Query psy15112
Match_columns 73
No_of_seqs 111 out of 433
Neff 5.3
Searched_HMMs 46136
Date Fri Aug 16 20:55:33 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy15112.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/15112hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF00183 HSP90: Hsp90 protein; 99.0 3.5E-10 7.7E-15 88.6 3.3 66 7-73 464-531 (531)
2 KOG0020|consensus 98.8 2.6E-09 5.6E-14 85.2 3.9 43 6-48 712-755 (785)
3 KOG0019|consensus 98.6 3.6E-08 7.8E-13 79.1 2.6 38 7-44 614-652 (656)
4 PTZ00272 heat shock protein 83 98.5 1.8E-07 3.9E-12 75.8 4.3 64 7-73 637-701 (701)
5 PTZ00130 heat shock protein 90 97.5 6.1E-05 1.3E-09 62.3 2.6 37 8-44 726-763 (814)
6 PRK05218 heat shock protein 90 95.4 0.0086 1.9E-07 48.0 1.9 31 7-37 581-612 (613)
7 PRK14083 HSP90 family protein; 93.3 0.052 1.1E-06 43.8 1.9 33 8-40 561-596 (601)
8 COG0326 HtpG Molecular chapero 93.0 0.059 1.3E-06 43.9 1.8 31 7-37 591-622 (623)
9 PRK01964 4-oxalocrotonate taut 66.1 4.6 9.9E-05 22.7 1.6 29 14-42 8-37 (64)
10 PF10298 WhiA_N: WhiA N-termin 62.7 6.3 0.00014 23.6 1.8 38 4-42 16-53 (86)
11 PRK00745 4-oxalocrotonate taut 59.5 7.1 0.00015 21.5 1.5 29 14-42 8-37 (62)
12 COG3002 Uncharacterized protei 55.0 6.9 0.00015 33.1 1.3 27 9-35 530-557 (880)
13 TIGR00013 taut 4-oxalocrotonat 52.5 12 0.00026 20.6 1.7 27 16-42 10-37 (63)
14 cd00491 4Oxalocrotonate_Tautom 51.4 13 0.00027 20.0 1.7 29 14-42 7-36 (58)
15 PF09145 Ubiq-assoc: Ubiquitin 50.5 6.7 0.00015 22.1 0.4 14 28-41 9-22 (46)
16 PTZ00397 macrophage migration 49.6 13 0.00029 23.1 1.8 27 16-42 67-94 (116)
17 PRK02220 4-oxalocrotonate taut 49.1 13 0.00027 20.4 1.5 30 13-42 7-37 (61)
18 PF13373 DUF2407_C: DUF2407 C- 29.8 22 0.00048 23.8 0.5 22 13-34 6-28 (140)
19 PRK02289 4-oxalocrotonate taut 28.6 43 0.00094 18.5 1.5 29 14-42 8-37 (60)
20 PTZ00450 macrophage migration 28.2 54 0.0012 20.9 2.1 26 17-42 68-94 (113)
21 PF12995 DUF3879: Domain of un 26.0 38 0.00082 24.1 1.1 23 13-35 130-154 (186)
22 PF07905 PucR: Purine cataboli 26.0 88 0.0019 19.6 2.8 23 13-35 46-71 (123)
23 PF08672 APC2: Anaphase promot 25.7 50 0.0011 19.0 1.4 11 26-36 14-24 (60)
24 PF15007 CEP44: Centrosomal sp 22.5 53 0.0012 22.0 1.3 30 12-41 53-85 (131)
25 PF04282 DUF438: Family of unk 21.0 22 0.00048 21.4 -0.7 23 6-28 34-57 (71)
26 KOG0652|consensus 20.8 1E+02 0.0022 24.1 2.6 39 4-42 318-363 (424)
27 PF06858 NOG1: Nucleolar GTP-b 20.4 50 0.0011 19.2 0.7 18 15-32 26-44 (58)
No 1
>PF00183 HSP90: Hsp90 protein; InterPro: IPR001404 Molecular chaperones, or heat shock proteins (Hsps) are ubiquitous proteins that act to maintain proper protein folding within the cell []. They assist in the folding of nascent polypeptide chains, and are also involved in the re-folding of denatured proteins following proteotoxic stress. As their name implies, the heat shock proteins were first identified as proteins that were up-regulated under conditions of elevated temperature. However, subsequent studies have shown that increased Hsp expression is induced by a variety of cellular stresses, including oxidative stress and inflammation. Five major Hsp families have been determined, and are categorized according to their molecular size (Hsp100, Hsp90, Hsp70, Hsp60, and the small Hsps). Hsps are involved in a variety of cellular processes that are ATP-dependent. These include: prevention of protein aggregation, protein degradation, protein trafficking, and maintenance of signalling proteins in a conformation that permits activation. Hsp90 chaperones are unique in their ability to regulate a specific subset of cellular signalling proteins that have been implicated in disease processes, including intracellular protein kinases, steroid hormone receptors, and growth factor receptors [].; GO: 0005524 ATP binding, 0051082 unfolded protein binding, 0006457 protein folding, 0006950 response to stress; PDB: 3K99_D 2H55_A 3RLP_A 1OSF_A 3R4M_A 1YES_A 1UY9_A 3FT8_A 2YE2_A 2QF6_A ....
Probab=98.97 E-value=3.5e-10 Score=88.64 Aligned_cols=66 Identities=32% Similarity=0.432 Sum_probs=37.3
Q ss_pred chhhhceeecCCCCCc-hhHHHHHHHHHHccCCCCCCCCCCCCcccc-cCCCCCCCCCCcccccccccC
Q psy15112 7 DLAIGKSQELDFWLEN-LIHAARIHRMIKLGLGIEDDDEPAPSEEVK-SEELPAADADTEDASRMEEVD 73 (73)
Q Consensus 7 ~~~~tAlL~SGF~led-~~fA~RI~~ml~~~L~i~~~~~~~e~~~~~-~~e~p~~e~~~~~~s~~EevD 73 (73)
.|-++|+|+|||.|+| +.|++||++||+++|+++.+....+....+ .++.++.+... +++.+|+||
T Consensus 464 ~LyD~AlL~~G~~l~dp~~F~~Ri~~lL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~e~vd 531 (531)
T PF00183_consen 464 QLYDTALLASGFELEDPAAFAKRINKLLEKSLGVDPDAEVEEEDEEEEEEEEEEEEEDK-EDSEMEEVD 531 (531)
T ss_dssp HHHHHHHHHTTSS-SSHHHHHHHHHHHHHHTTC--STTTTTTGGG-GGG---------------SSS--
T ss_pred HHhhhhhhhcCCCcccHHHHHHHHHHHHHHhcCCCcCCcccccccccccCCCCCCcCCC-cccccccCC
Confidence 4679999999999999 999999999999999999875543332211 11222222222 568888887
No 2
>KOG0020|consensus
Probab=98.84 E-value=2.6e-09 Score=85.16 Aligned_cols=43 Identities=23% Similarity=0.258 Sum_probs=37.9
Q ss_pred cchhhhceeecCCCCCc-hhHHHHHHHHHHccCCCCCCCCCCCC
Q psy15112 6 VDLAIGKSQELDFWLEN-LIHAARIHRMIKLGLGIEDDDEPAPS 48 (73)
Q Consensus 6 ~~~~~tAlL~SGF~led-~~fA~RI~~ml~~~L~i~~~~~~~e~ 48 (73)
|-+-+||+|+|||.|.| ..||.||++||+++|+|++++..+++
T Consensus 712 ~lmf~TAtlrSGf~L~d~~~fadrIe~~lr~sL~is~Da~ve~e 755 (785)
T KOG0020|consen 712 VLMFETATLRSGFILQDTKDFADRIENMLRQSLNISPDAQVEEE 755 (785)
T ss_pred HHHHHHHHhhcCccccchHHHHHHHHHHHHhhcCCCcccccccc
Confidence 34568999999999999 99999999999999999998765544
No 3
>KOG0019|consensus
Probab=98.55 E-value=3.6e-08 Score=79.11 Aligned_cols=38 Identities=29% Similarity=0.442 Sum_probs=34.9
Q ss_pred chhhhceeecCCCCCc-hhHHHHHHHHHHccCCCCCCCC
Q psy15112 7 DLAIGKSQELDFWLEN-LIHAARIHRMIKLGLGIEDDDE 44 (73)
Q Consensus 7 ~~~~tAlL~SGF~led-~~fA~RI~~ml~~~L~i~~~~~ 44 (73)
-+-|||||+|||+++| +.|++|||+||++||+++++.+
T Consensus 614 llfetALlssGfsl~dP~~~~~ri~~ml~~~l~~~e~~~ 652 (656)
T KOG0019|consen 614 QLYETALISAGFSLDDPQTMVGRINRLLKSGLGRDEDEV 652 (656)
T ss_pred HHHHHHHHHcCCCcCChHHHhhHHHHHHHHHhccCCCcc
Confidence 3569999999999999 9999999999999999998754
No 4
>PTZ00272 heat shock protein 83 kDa (Hsp83); Provisional
Probab=98.46 E-value=1.8e-07 Score=75.75 Aligned_cols=64 Identities=36% Similarity=0.438 Sum_probs=46.4
Q ss_pred chhhhceeecCCCCCc-hhHHHHHHHHHHccCCCCCCCCCCCCcccccCCCCCCCCCCcccccccccC
Q psy15112 7 DLAIGKSQELDFWLEN-LIHAARIHRMIKLGLGIEDDDEPAPSEEVKSEELPAADADTEDASRMEEVD 73 (73)
Q Consensus 7 ~~~~tAlL~SGF~led-~~fA~RI~~ml~~~L~i~~~~~~~e~~~~~~~e~p~~e~~~~~~s~~EevD 73 (73)
.|-|+|+|++||.++| +.|++||++||+.+|++++++....+ ...+..+++++.+ +++.|++||
T Consensus 637 ~LyD~AlL~~G~~leDp~~f~~Ri~~lL~~~l~~~~~~~~~~~--~~~~~~~~~~~~~-~~~~~~~v~ 701 (701)
T PTZ00272 637 LLFDTSLLTSGFQLEDPTGYAERINRMIKLGLSLDEEEEEAAE--APVAETAPAEVTA-GTSSMEQVD 701 (701)
T ss_pred HHHHHHHHhCCCCccCHHHHHHHHHHHHHHhcCCCcccccccc--ccccccCCccccc-cccccccCC
Confidence 3568999999999999 99999999999889999987543111 1112224455433 468888886
No 5
>PTZ00130 heat shock protein 90; Provisional
Probab=97.51 E-value=6.1e-05 Score=62.31 Aligned_cols=37 Identities=19% Similarity=0.174 Sum_probs=33.8
Q ss_pred hhhhceeecCCCCCc-hhHHHHHHHHHHccCCCCCCCC
Q psy15112 8 LAIGKSQELDFWLEN-LIHAARIHRMIKLGLGIEDDDE 44 (73)
Q Consensus 8 ~~~tAlL~SGF~led-~~fA~RI~~ml~~~L~i~~~~~ 44 (73)
|-++|+|.+||.|+| ..|++||++||..+|++++.+.
T Consensus 726 Lyd~AlL~~G~~l~DP~~fa~ri~~ll~~~l~~~~~~~ 763 (814)
T PTZ00130 726 IYQSAKLASGFDLEDTADLAQIVYDHINQKLGVDNNLK 763 (814)
T ss_pred HHHHHHHhCCCCCCCHHHHHHHHHHHHHHhcCCCcccc
Confidence 568999999999999 9999999999999999997644
No 6
>PRK05218 heat shock protein 90; Provisional
Probab=95.42 E-value=0.0086 Score=48.02 Aligned_cols=31 Identities=16% Similarity=-0.049 Sum_probs=27.7
Q ss_pred chhhhceeecCCCCCc-hhHHHHHHHHHHccC
Q psy15112 7 DLAIGKSQELDFWLEN-LIHAARIHRMIKLGL 37 (73)
Q Consensus 7 ~~~~tAlL~SGF~led-~~fA~RI~~ml~~~L 37 (73)
.+-++|+|.+||.++| ..|++|+++||...+
T Consensus 581 ~Lyd~AlL~~G~~~~d~~~~~~r~~~ll~~~~ 612 (613)
T PRK05218 581 LLYDQALLAEGGSLEDPAAFVKRLNELLLKLL 612 (613)
T ss_pred HHHHHHHHhCCCCccCHHHHHHHHHHHHHHhh
Confidence 4568999999999999 999999999998654
No 7
>PRK14083 HSP90 family protein; Provisional
Probab=93.29 E-value=0.052 Score=43.76 Aligned_cols=33 Identities=12% Similarity=0.062 Sum_probs=29.7
Q ss_pred hhhhceeecCCCCC--c-hhHHHHHHHHHHccCCCC
Q psy15112 8 LAIGKSQELDFWLE--N-LIHAARIHRMIKLGLGIE 40 (73)
Q Consensus 8 ~~~tAlL~SGF~le--d-~~fA~RI~~ml~~~L~i~ 40 (73)
+-++|+|.+||.|+ + +.|+.+|++||.++|+-+
T Consensus 561 Lyd~AlL~~g~~l~~~e~~~~~~~~~~l~~~~l~~~ 596 (601)
T PRK14083 561 LYVQALLLGHRPLRPAEMALLNRSLLGLLELALDAD 596 (601)
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHhCCC
Confidence 45889999999999 8 999999999999988754
No 8
>COG0326 HtpG Molecular chaperone, HSP90 family [Posttranslational modification, protein turnover, chaperones]
Probab=92.97 E-value=0.059 Score=43.95 Aligned_cols=31 Identities=16% Similarity=-0.058 Sum_probs=28.3
Q ss_pred chhhhceeecCCCCCc-hhHHHHHHHHHHccC
Q psy15112 7 DLAIGKSQELDFWLEN-LIHAARIHRMIKLGL 37 (73)
Q Consensus 7 ~~~~tAlL~SGF~led-~~fA~RI~~ml~~~L 37 (73)
++-++|||.+||.++| ..|+.|+.++|..++
T Consensus 591 llydqAll~eg~~~~dp~~F~~rln~ll~~~~ 622 (623)
T COG0326 591 LLYDQALLAEGGPLEDPAAFIERLNDLLSRLL 622 (623)
T ss_pred HHHHHHHHhCCCCccCHHHHHHHHHHHHHHhc
Confidence 4668999999999999 999999999998765
No 9
>PRK01964 4-oxalocrotonate tautomerase; Provisional
Probab=66.08 E-value=4.6 Score=22.67 Aligned_cols=29 Identities=10% Similarity=-0.081 Sum_probs=25.7
Q ss_pred eecCCCCCc-hhHHHHHHHHHHccCCCCCC
Q psy15112 14 QELDFWLEN-LIHAARIHRMIKLGLGIEDD 42 (73)
Q Consensus 14 L~SGF~led-~~fA~RI~~ml~~~L~i~~~ 42 (73)
|..|.+.+. +.++.+|++.+...||++.+
T Consensus 8 l~~grt~eqk~~l~~~it~~l~~~lg~p~~ 37 (64)
T PRK01964 8 LLEGRPEEKIKNLIREVTEAISATLDVPKE 37 (64)
T ss_pred EeCCCCHHHHHHHHHHHHHHHHHHhCcChh
Confidence 556899999 99999999999999998865
No 10
>PF10298 WhiA_N: WhiA N-terminal LAGLIDADG-like domain; InterPro: IPR018478 This entry represents the N-terminal domain of sporulation factor WhiA []. This domain is related to the LAGLIDADG homing endonuclease domain while the C-terminal domain of WhiA is predicted to be a DNA binding helix-turn-helix domain [].; PDB: 3HYI_A 3HYJ_D.
Probab=62.72 E-value=6.3 Score=23.64 Aligned_cols=38 Identities=26% Similarity=0.353 Sum_probs=22.2
Q ss_pred cccchhhhceeecCCCCCchhHHHHHHHHHHccCCCCCC
Q psy15112 4 GSVDLAIGKSQELDFWLENLIHAARIHRMIKLGLGIEDD 42 (73)
Q Consensus 4 ~~~~~~~tAlL~SGF~led~~fA~RI~~ml~~~L~i~~~ 42 (73)
|++++. ..-+.==|+.++...|.|||++++.-.+++.+
T Consensus 16 G~l~~~-~~~~~l~~~ten~~vARri~~llk~~f~i~~e 53 (86)
T PF10298_consen 16 GSLSIS-NGRISLEISTENAAVARRIYSLLKKLFDIDPE 53 (86)
T ss_dssp EEECTT-TTEEEE--EES-HHHHHHHHHHHHHTT--EEE
T ss_pred CEEEEE-CCEEEEEEEeCCHHHHHHHHHHHHHHhCCCeE
Confidence 444444 22333345556688999999999988887643
No 11
>PRK00745 4-oxalocrotonate tautomerase; Provisional
Probab=59.45 E-value=7.1 Score=21.50 Aligned_cols=29 Identities=17% Similarity=0.006 Sum_probs=25.1
Q ss_pred eecCCCCCc-hhHHHHHHHHHHccCCCCCC
Q psy15112 14 QELDFWLEN-LIHAARIHRMIKLGLGIEDD 42 (73)
Q Consensus 14 L~SGF~led-~~fA~RI~~ml~~~L~i~~~ 42 (73)
+..|.+.+. +.++.+|++.+..-||++.+
T Consensus 8 ~~~grs~eqk~~l~~~it~~l~~~~~~p~~ 37 (62)
T PRK00745 8 LFEGRTVEQKRKLVEEITRVTVETLGCPPE 37 (62)
T ss_pred EcCCCCHHHHHHHHHHHHHHHHHHcCCChh
Confidence 456888889 99999999999999998765
No 12
>COG3002 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=55.00 E-value=6.9 Score=33.09 Aligned_cols=27 Identities=26% Similarity=0.287 Sum_probs=24.5
Q ss_pred hhhceeecCCCCCc-hhHHHHHHHHHHc
Q psy15112 9 AIGKSQELDFWLEN-LIHAARIHRMIKL 35 (73)
Q Consensus 9 ~~tAlL~SGF~led-~~fA~RI~~ml~~ 35 (73)
.+|+++.-||++++ ..||.++.|||.+
T Consensus 530 ~~t~~~~vGFT~~Eq~~~a~qaLKmmgL 557 (880)
T COG3002 530 PQTLAQPVGFTLDEQAQMAAQALKMMGL 557 (880)
T ss_pred chhhhcccCCchHHHHHHHHHHHHHhCc
Confidence 46889999999999 9999999999875
No 13
>TIGR00013 taut 4-oxalocrotonate tautomerase family enzyme. 4-oxalocrotonate tautomerase is a homohexamer in which each monomer is very small, at about 62 amino acids. Pro-1 of the mature protein serves as a general base. The enzyme functions in meta-cleavage pathways of aromatic hydrocarbon catabolism. Because several Arg residues located near the active site in the crystal structure of Pseudomonas putida are not conserved among all members of this family, because the literature describes a general role in the isomerization of beta,gamma-unsaturated enones to their alpha,beta-isomers, and because of the presence of fairly distantly related paralogs in Campylobacter jejuni, the family is regarded as not necessarily uniform in function.
Probab=52.54 E-value=12 Score=20.56 Aligned_cols=27 Identities=11% Similarity=-0.081 Sum_probs=24.3
Q ss_pred cCCCCCc-hhHHHHHHHHHHccCCCCCC
Q psy15112 16 LDFWLEN-LIHAARIHRMIKLGLGIEDD 42 (73)
Q Consensus 16 SGF~led-~~fA~RI~~ml~~~L~i~~~ 42 (73)
.|.+.+. +.++..|+..+...||++.+
T Consensus 10 ~grt~eqK~~l~~~it~~l~~~lg~~~~ 37 (63)
T TIGR00013 10 EGRTDEQKRQLIEGVTEAMAETLGANLE 37 (63)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHhCCCcc
Confidence 6899999 99999999999999988765
No 14
>cd00491 4Oxalocrotonate_Tautomerase 4-Oxalocrotonate Tautomerase: Catalyzes the isomerization of unsaturated ketones. The structure is a homohexamer that is arranged as a trimer of dimers. The hexamer contains six active sites, each formed by residues from three monomers, two from one dimer and the third from a neighboring monomer. Each monomer is a beta-alpha-beta fold with two small beta strands at the C-terminus that fold back on themselves. A pair of monomers form a dimer with two-fold symmetry, consisting of a 4-stranded beta sheet with two helices on one side and two additional small beta strands at each end. The dimers are assembled around a 3-fold axis of rotation to form a hexamer, with the short beta strands from each dimer contacting the neighboring dimers.
Probab=51.39 E-value=13 Score=20.00 Aligned_cols=29 Identities=14% Similarity=-0.073 Sum_probs=24.6
Q ss_pred eecCCCCCc-hhHHHHHHHHHHccCCCCCC
Q psy15112 14 QELDFWLEN-LIHAARIHRMIKLGLGIEDD 42 (73)
Q Consensus 14 L~SGF~led-~~fA~RI~~ml~~~L~i~~~ 42 (73)
+..|.+.+. +.+++.|++.+..-+|++.+
T Consensus 7 ~~~grt~eqk~~l~~~i~~~l~~~~g~~~~ 36 (58)
T cd00491 7 ILEGRTDEQKRELIERVTEAVSEILGAPEA 36 (58)
T ss_pred EcCCCCHHHHHHHHHHHHHHHHHHhCcCcc
Confidence 456888778 99999999999998888754
No 15
>PF09145 Ubiq-assoc: Ubiquitin-associated; InterPro: IPR015228 Ubiquitin-associated domains contain approximately 40 residues and bind ubiquitin noncovalently. They adopt a secondary structure consisting of three alpha-helices, and have been identified in various modular proteins involved in protein trafficking, clathrin assembly/disassembly, DNA repair, proteasomal degradation, and cell cycle regulation []. ; PDB: 1PGY_A.
Probab=50.46 E-value=6.7 Score=22.07 Aligned_cols=14 Identities=36% Similarity=0.807 Sum_probs=8.6
Q ss_pred HHHHHHHccCCCCC
Q psy15112 28 RIHRMIKLGLGIED 41 (73)
Q Consensus 28 RI~~ml~~~L~i~~ 41 (73)
-|-++|.+||+|+.
T Consensus 9 EiAkLMSLGLsid~ 22 (46)
T PF09145_consen 9 EIAKLMSLGLSIDK 22 (46)
T ss_dssp HHHHHHHH---SHH
T ss_pred HHHHHHHccCCHHH
Confidence 36789999999874
No 16
>PTZ00397 macrophage migration inhibition factor-like protein; Provisional
Probab=49.60 E-value=13 Score=23.14 Aligned_cols=27 Identities=19% Similarity=0.144 Sum_probs=24.3
Q ss_pred cCCCCCc-hhHHHHHHHHHHccCCCCCC
Q psy15112 16 LDFWLEN-LIHAARIHRMIKLGLGIEDD 42 (73)
Q Consensus 16 SGF~led-~~fA~RI~~ml~~~L~i~~~ 42 (73)
.|.+.+. +.|+.+|.+.+...|||+.+
T Consensus 67 g~~~~e~k~~l~~~i~~~l~~~lgi~~~ 94 (116)
T PTZ00397 67 GGISRSNNSSIAAAITKILASHLKVKSE 94 (116)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHhCcCcc
Confidence 6778888 99999999999999999876
No 17
>PRK02220 4-oxalocrotonate tautomerase; Provisional
Probab=49.07 E-value=13 Score=20.38 Aligned_cols=30 Identities=7% Similarity=-0.087 Sum_probs=25.6
Q ss_pred eeecCCCCCc-hhHHHHHHHHHHccCCCCCC
Q psy15112 13 SQELDFWLEN-LIHAARIHRMIKLGLGIEDD 42 (73)
Q Consensus 13 lL~SGF~led-~~fA~RI~~ml~~~L~i~~~ 42 (73)
.+..|.+.+. +.++.+|+..+...+|++.+
T Consensus 7 ~~~~Grs~eqk~~l~~~it~~l~~~~~~p~~ 37 (61)
T PRK02220 7 KLIEGRTEEQLKALVKDVTAAVSKNTGAPAE 37 (61)
T ss_pred EEcCCCCHHHHHHHHHHHHHHHHHHhCcChh
Confidence 3456999999 99999999999999998754
No 18
>PF13373 DUF2407_C: DUF2407 C-terminal domain
Probab=29.83 E-value=22 Score=23.78 Aligned_cols=22 Identities=14% Similarity=0.055 Sum_probs=19.7
Q ss_pred eeecCCCCCc-hhHHHHHHHHHH
Q psy15112 13 SQELDFWLEN-LIHAARIHRMIK 34 (73)
Q Consensus 13 lL~SGF~led-~~fA~RI~~ml~ 34 (73)
|++.||+-++ +.+....|++..
T Consensus 6 Ll~~GFS~~eI~~LR~QF~~~~~ 28 (140)
T PF13373_consen 6 LLSAGFSPEEIQDLRSQFHSIYG 28 (140)
T ss_pred HHHcCCCHHHHHHHHHHHHHHhc
Confidence 6789999999 999999999865
No 19
>PRK02289 4-oxalocrotonate tautomerase; Provisional
Probab=28.63 E-value=43 Score=18.52 Aligned_cols=29 Identities=7% Similarity=-0.165 Sum_probs=24.6
Q ss_pred eecCCCCCc-hhHHHHHHHHHHccCCCCCC
Q psy15112 14 QELDFWLEN-LIHAARIHRMIKLGLGIEDD 42 (73)
Q Consensus 14 L~SGF~led-~~fA~RI~~ml~~~L~i~~~ 42 (73)
+.-|.+.+. +.++..|++.+...++++.+
T Consensus 8 ~~~Grs~EqK~~L~~~it~a~~~~~~~p~~ 37 (60)
T PRK02289 8 LFEGRSQEQKNALAREVTEVVSRIAKAPKE 37 (60)
T ss_pred ECCCCCHHHHHHHHHHHHHHHHHHhCcCcc
Confidence 445888899 99999999999998998654
No 20
>PTZ00450 macrophage migration inhibitory factor-like protein; Provisional
Probab=28.21 E-value=54 Score=20.94 Aligned_cols=26 Identities=19% Similarity=0.286 Sum_probs=22.0
Q ss_pred CCCCCc-hhHHHHHHHHHHccCCCCCC
Q psy15112 17 DFWLEN-LIHAARIHRMIKLGLGIEDD 42 (73)
Q Consensus 17 GF~led-~~fA~RI~~ml~~~L~i~~~ 42 (73)
+...+. ..++.+|..++..-|||+.+
T Consensus 68 ~~~~~~n~~~s~~i~~~l~~~LgIp~d 94 (113)
T PTZ00450 68 EYAPSKPKMMTPRITAAITKECGIPAE 94 (113)
T ss_pred CcCHHHHHHHHHHHHHHHHHHcCCCcc
Confidence 345566 89999999999999999875
No 21
>PF12995 DUF3879: Domain of unknown function, E. rectale Gene description (DUF3879); InterPro: IPR024540 This entry represents proteins of unknown function found primarily in Firmicutes. The Eubacterium rectale gene appears to be upregulated in the presence of Bacteroides thetaiotaomicron compared to growth in pure culture [].
Probab=26.02 E-value=38 Score=24.05 Aligned_cols=23 Identities=13% Similarity=-0.000 Sum_probs=20.5
Q ss_pred eeecCCCCCc--hhHHHHHHHHHHc
Q psy15112 13 SQELDFWLEN--LIHAARIHRMIKL 35 (73)
Q Consensus 13 lL~SGF~led--~~fA~RI~~ml~~ 35 (73)
-|+.||+|+. ..+++|+|.-++.
T Consensus 130 RlaAGWTLeQye~qyr~a~ydaVk~ 154 (186)
T PF12995_consen 130 RLAAGWTLEQYERQYRQAFYDAVKS 154 (186)
T ss_pred hhcccccHHHHHHHHHHHHHHHHHh
Confidence 3678999999 8899999999985
No 22
>PF07905 PucR: Purine catabolism regulatory protein-like family; InterPro: IPR012914 This domain is found in the purine catabolism regulatory protein expressed by Bacillus subtilis (PucR, O32138 from SWISSPROT). PucR is thought to be a transcriptional regulator of genes involved in the purine degradation pathway, and may contain a LysR-like DNA-binding domain. It is similar to LysR-type regulators in that it represses its own expression []. The other members of this family are also putative regulatory proteins.
Probab=25.99 E-value=88 Score=19.65 Aligned_cols=23 Identities=9% Similarity=-0.028 Sum_probs=18.0
Q ss_pred eeecCCCCCc-h--hHHHHHHHHHHc
Q psy15112 13 SQELDFWLEN-L--IHAARIHRMIKL 35 (73)
Q Consensus 13 lL~SGF~led-~--~fA~RI~~ml~~ 35 (73)
+|+|||.+.+ . .+.+-|.++.+.
T Consensus 46 vlttg~~~~~~~~~~~~~~i~~L~~~ 71 (123)
T PF07905_consen 46 VLTTGYALRDDDEEELREFIRELAEK 71 (123)
T ss_pred EEECCcccCCCCHHHHHHHHHHHHHC
Confidence 6889999887 4 477788888774
No 23
>PF08672 APC2: Anaphase promoting complex (APC) subunit 2; InterPro: IPR014786 The anaphase-promoting complex (APC) or cyclosome is a multi-subunit E3 protein ubiquitin ligase that regulates important events in mitosis such as the initiation of anaphase and exit from telophase. The APC, in conjunction with other enzymes, assembles multi-ubiquitin chains on a variety of regulatory proteins, thereby targeting them for proteolysis by the 26S proteasome. Anaphase is initiated when the APC triggers the destruction of securin, thereby allowing the protease, separase, to disrupt sister-chromatid cohesion. Securin ubiquitination by the APC is inhibited by cyclin-dependent kinase 1 (Cdk1)-dependent phosphorylation []. Forkhead Box M1 (FoxM1), which is a transcription factor that is over-expressed in many cancers, is degraded in late mitosis and early G1 phase by the APC/cyclosome (APC/C) E3 ubiquitin ligase []. The APC/C targets mitotic cyclins for destruction in mitosis and G1 phase and is then inactivated at S phase. It thereby generates alternating states of high and low cyclin-Cdk activity, which is required for the alternation of mitosis and DNA replication []. The APC/C is composed of at least 13 subunits that stay tightly associated throughout the cell cycle: APC1, APC2, APC4, APC5, APC9, APC11, CDC16, CDC23, CDC26, CDC27, DOC1, MND2 and SWM1[], []. In fission yeast the 13 subunits are known as: Apc1, Apc2, Nuc2, Apc4, Apc5, Cut9, Apc8, Apc10, Apc11, Hcn1, Apc13, Apc14 and Apc15 []. This entry represents a C-terminal domain found in APC subunit 2. ; PDB: 1LDD_A.
Probab=25.71 E-value=50 Score=18.99 Aligned_cols=11 Identities=45% Similarity=0.634 Sum_probs=9.5
Q ss_pred HHHHHHHHHcc
Q psy15112 26 AARIHRMIKLG 36 (73)
Q Consensus 26 A~RI~~ml~~~ 36 (73)
..|||.|+|.-
T Consensus 14 l~RIh~mLkmf 24 (60)
T PF08672_consen 14 LDRIHSMLKMF 24 (60)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHhc
Confidence 57999999976
No 24
>PF15007 CEP44: Centrosomal spindle body, CEP44
Probab=22.51 E-value=53 Score=21.96 Aligned_cols=30 Identities=7% Similarity=0.092 Sum_probs=23.7
Q ss_pred ceeecCCCCCc---hhHHHHHHHHHHccCCCCC
Q psy15112 12 KSQELDFWLEN---LIHAARIHRMIKLGLGIED 41 (73)
Q Consensus 12 AlL~SGF~led---~~fA~RI~~ml~~~L~i~~ 41 (73)
.++..||.|-- .-|...+||+|+.-++..+
T Consensus 53 ~l~~~g~eL~~k~D~RF~E~vyk~LRdef~YkP 85 (131)
T PF15007_consen 53 LLVDRGYELYGKNDLRFVESVYKLLRDEFNYKP 85 (131)
T ss_pred HHHHcCchhhcCChHHHHHHHHHHHHHHhCCCC
Confidence 46678888854 6699999999998777654
No 25
>PF04282 DUF438: Family of unknown function (DUF438); InterPro: IPR007380 This is a a group of uncharacterised proteins.
Probab=21.02 E-value=22 Score=21.42 Aligned_cols=23 Identities=9% Similarity=-0.101 Sum_probs=18.9
Q ss_pred cchhhhceeecCCCCCc-hhHHHH
Q psy15112 6 VDLAIGKSQELDFWLEN-LIHAAR 28 (73)
Q Consensus 6 ~~~~~tAlL~SGF~led-~~fA~R 28 (73)
+..+|-.||..|.++++ +.+++-
T Consensus 34 I~~~Eq~Li~eG~~~eeiq~LCdv 57 (71)
T PF04282_consen 34 ISAAEQELIQEGMPVEEIQKLCDV 57 (71)
T ss_pred HHHHHHHHHHcCCCHHHHHHHhHH
Confidence 45688899999999999 887753
No 26
>KOG0652|consensus
Probab=20.81 E-value=1e+02 Score=24.05 Aligned_cols=39 Identities=23% Similarity=0.164 Sum_probs=30.2
Q ss_pred cccchhhhceeecC-------CCCCchhHHHHHHHHHHccCCCCCC
Q psy15112 4 GSVDLAIGKSQELD-------FWLENLIHAARIHRMIKLGLGIEDD 42 (73)
Q Consensus 4 ~~~~~~~tAlL~SG-------F~led~~fA~RI~~ml~~~L~i~~~ 42 (73)
..|++-+-|||+|| |.+.+..-..||..+-....++.++
T Consensus 318 NRvDiLDPALlRSGRLDRKIEfP~Pne~aRarIlQIHsRKMnv~~D 363 (424)
T KOG0652|consen 318 NRVDILDPALLRSGRLDRKIEFPHPNEEARARILQIHSRKMNVSDD 363 (424)
T ss_pred ccccccCHHHhhcccccccccCCCCChHHHHHHHHHhhhhcCCCCC
Confidence 46899999999999 7777755567888877777776655
No 27
>PF06858 NOG1: Nucleolar GTP-binding protein 1 (NOG1); InterPro: IPR010674 This domain represents a conserved region of approximately 60 residues in length within nucleolar GTP-binding protein 1 (NOG1). The NOG1 family includes eukaryotic, bacterial and archaeal proteins. In Saccharomyces cerevisiae, the NOG1 gene has been shown to be essential for cell viability, suggesting that NOG1 may play an important role in nucleolar functions. In particular, NOG1 is believed to be functionally linked to ribosome biogenesis, which occurs in the nucleolus. In eukaryotes, NOG1 mutants were found to disrupt the biogenesis of the 60S ribosomal subunit []. The DRG and OBG proteins as well as the prokaryotic NOG-like proteins are homologous throughout their length to the amino half of eukaryotic NOG1, which contains the GTP binding motifs (IPR006073 from INTERPRO); the N-terminal GTP-binding motif is required for function.; GO: 0005525 GTP binding; PDB: 2E87_A.
Probab=20.38 E-value=50 Score=19.25 Aligned_cols=18 Identities=17% Similarity=0.259 Sum_probs=12.2
Q ss_pred ecCCCCCc-hhHHHHHHHH
Q psy15112 15 ELDFWLEN-LIHAARIHRM 32 (73)
Q Consensus 15 ~SGF~led-~~fA~RI~~m 32 (73)
+|||++++ -..-..|...
T Consensus 26 ~CGysie~Q~~L~~~ik~~ 44 (58)
T PF06858_consen 26 QCGYSIEEQLSLFKEIKPL 44 (58)
T ss_dssp TTSS-HHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHH
Confidence 68999999 7666655554
Done!