RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy15112
(73 letters)
>3q6m_A Heat shock protein HSP 90-alpha; three domains, trimer of dimer,
hexamer, chaperone; 3.00A {Homo sapiens} PDB: 3q6n_A
Length = 448
Score = 51.6 bits (124), Expect = 8e-10
Identities = 25/49 (51%), Positives = 29/49 (59%)
Query: 25 HAARIHRMIKLGLGIEDDDEPAPSEEVKSEELPAADADTEDASRMEEVD 73
HA RI+RMIKLGLGI++DD A E +D SRMEEVD
Sbjct: 394 HANRIYRMIKLGLGIDEDDPTADDTSAAVTEEMPPLEGDDDTSRMEEVD 442
>3hjc_A Heat shock protein 83-1; sleeping sickness, structura genomics,
stress response protein, chaperone, structural GE
consortium, SGC; 2.50A {Leishmania major}
Length = 444
Score = 35.7 bits (83), Expect = 4e-04
Identities = 16/34 (47%), Positives = 23/34 (67%), Gaps = 1/34 (2%)
Query: 25 HAARIHRMIKLGLGIEDDDEPAPSEEVKSEELPA 58
+A RI+RMIKLGL + D++E +E +E PA
Sbjct: 410 YAERINRMIKLGLSL-DEEEEEAAEAPVAETAPA 442
>2o1u_A Endoplasmin; GRP94, HSP82, HSP90, HTPG, chaperone, AMP-PNP, GP96;
HET: ANP; 2.40A {Canis lupus familiaris} PDB: 2o1v_A*
2o1w_A 2o1t_A
Length = 666
Score = 28.4 bits (64), Expect = 0.14
Identities = 8/20 (40%), Positives = 13/20 (65%)
Query: 25 HAARIHRMIKLGLGIEDDDE 44
+ RI RM++L L I+ D +
Sbjct: 647 YGDRIERMLRLSLNIDPDAK 666
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 25.8 bits (56), Expect = 1.3
Identities = 8/37 (21%), Positives = 16/37 (43%), Gaps = 2/37 (5%)
Query: 38 GIEDDDEPAPSEEVKSEELP--AADADTEDASRMEEV 72
G DDEP E+ + L ++ + + ++V
Sbjct: 47 GFAADDEPTTPAELVGKFLGYVSSLVEPSKVGQFDQV 83
>3saf_A Exosome component 10; exoribonuclease, RNA exosome, hydrolase;
2.50A {Homo sapiens} PDB: 3sag_A 3sah_A 2cpr_A
Length = 428
Score = 25.6 bits (56), Expect = 1.5
Identities = 7/36 (19%), Positives = 14/36 (38%)
Query: 25 HAARIHRMIKLGLGIEDDDEPAPSEEVKSEELPAAD 60
+H +I+ + + KS LP+A+
Sbjct: 387 QINEMHLLIQQAREMPLLKSEVAAGVKKSGPLPSAE 422
>2xr1_A Cleavage and polyadenylation specificity factor 1 subunit;
hydrolase, metallo-beta-lactamase, beta-CAsp, RNA
processing; 2.59A {Methanosarcina mazei}
Length = 640
Score = 25.3 bits (56), Expect = 1.7
Identities = 9/24 (37%), Positives = 13/24 (54%)
Query: 9 AIGKSQELDFWLENLIHAARIHRM 32
A+G+SQE+ LE I I +
Sbjct: 420 AVGRSQEVMIVLEESIRKGLIPEV 443
>2ycb_A Beta-CAsp RNAse, cleavage and polyadenylation specificity factor;
hydrolase, KH, metallo-beta-lactamase; 3.10A
{Methanothermobacter thermautotrophicusorganism_taxid}
Length = 636
Score = 25.3 bits (56), Expect = 1.8
Identities = 9/24 (37%), Positives = 13/24 (54%)
Query: 9 AIGKSQELDFWLENLIHAARIHRM 32
A+G++QEL LE I I +
Sbjct: 417 AVGRAQELMIVLEEYIRTGIIDEV 440
>2esn_A Probable transcriptional regulator; PA0477, APC5828,transcription,
PSI, protein struc initiative, MCSG; 2.10A {Pseudomonas
aeruginosa} SCOP: a.4.5.37 c.94.1.1
Length = 310
Score = 24.5 bits (54), Expect = 3.0
Identities = 6/25 (24%), Positives = 12/25 (48%)
Query: 1 MERGSVDLAIGKSQELDFWLENLIH 25
+ G +D A+G +E + E +
Sbjct: 146 LASGRIDFALGYDEEHERLPEGIQA 170
>3ius_A Uncharacterized conserved protein; APC63810, silicibacter pomeroyi
DSS, structural genomics, PSI-2, protein structure
initiative; HET: MSE; 1.66A {Ruegeria pomeroyi dss-3}
Length = 286
Score = 24.5 bits (53), Expect = 3.2
Identities = 10/38 (26%), Positives = 17/38 (44%), Gaps = 8/38 (21%)
Query: 22 NLIHAARIHRMIKLGLGIED--------DDEPAPSEEV 51
+ IH I +++ + D DDEP P ++V
Sbjct: 181 SRIHVEDIAQVLAASMARPDPGAVYNVCDDEPVPPQDV 218
>2y7p_A LYSR-type regulatory protein; transcription regulator,
DNA-binding, transcription, transcr factor,
transcription regulation; HET: SAL PEU; 1.85A
{Burkholderia SP} PDB: 2y7k_A* 2y84_A 2y7w_A 2y7r_A
Length = 218
Score = 24.1 bits (53), Expect = 4.5
Identities = 10/17 (58%), Positives = 12/17 (70%)
Query: 1 MERGSVDLAIGKSQELD 17
ME G+VDLA+G EL
Sbjct: 53 MESGAVDLALGLLPELQ 69
>1uth_A LYSR-type regulatory protein; transcription regulation,
transcriptional regulator; 2.2A {Burkholderia SP} SCOP:
c.94.1.1 PDB: 1utb_A 1utb_B 1uth_B 2uyf_A 2uye_A
Length = 315
Score = 24.1 bits (53), Expect = 4.7
Identities = 10/17 (58%), Positives = 12/17 (70%)
Query: 1 MERGSVDLAIGKSQELD 17
ME G+VDLA+G EL
Sbjct: 150 MESGAVDLALGLLPELQ 166
>3oxn_A Putative transcriptional regulator, LYSR family; structural
genomics, PSI-2, protein structure initiative; 2.70A
{Vibrio parahaemolyticus}
Length = 241
Score = 23.8 bits (52), Expect = 6.1
Identities = 4/17 (23%), Positives = 6/17 (35%)
Query: 1 MERGSVDLAIGKSQELD 17
+ DLAI +
Sbjct: 64 LTYEGADLAICRPTGPV 80
>2k5w_A Hypothetical cytosolic protein BCR103A; unknown function,
structural genomics, PSI-2, protein structure
initiative; NMR {Bacillus cereus atcc 14579} SCOP:
b.40.13.1
Length = 117
Score = 23.4 bits (50), Expect = 7.3
Identities = 10/58 (17%), Positives = 24/58 (41%), Gaps = 9/58 (15%)
Query: 11 GKSQELDFW--LENLIHAARIHRMIKLGLGIEDDDEPAPS-------EEVKSEELPAA 59
G +++ F + H + ++L + +D+ + S EE++ +LP
Sbjct: 44 GVKKQITFRSTKKENDHKLNKYAFLRLYVDQDDNSKNEISSIEVKSYEEIQKADLPEK 101
>3af5_A Putative uncharacterized protein PH1404; archaeal CPSF, beta-CAsp
family, KH domain, ribonuclease, ME beta-lactamase
superfamily, archaea; 2.60A {Pyrococcus horikoshii} PDB:
3af6_A*
Length = 651
Score = 23.5 bits (51), Expect = 9.3
Identities = 7/22 (31%), Positives = 11/22 (50%)
Query: 9 AIGKSQELDFWLENLIHAARIH 30
A+G++QE+ LE I
Sbjct: 432 AVGRAQEVMMVLEEYARIGGIE 453
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.310 0.131 0.360
Gapped
Lambda K H
0.267 0.0610 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,167,803
Number of extensions: 61365
Number of successful extensions: 99
Number of sequences better than 10.0: 1
Number of HSP's gapped: 99
Number of HSP's successfully gapped: 21
Length of query: 73
Length of database: 6,701,793
Length adjustment: 43
Effective length of query: 30
Effective length of database: 5,501,190
Effective search space: 165035700
Effective search space used: 165035700
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 51 (23.7 bits)