Query psy15113
Match_columns 218
No_of_seqs 198 out of 1303
Neff 5.6
Searched_HMMs 29240
Date Fri Aug 16 20:57:26 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy15113.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/15113hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2lor_A Transmembrane protein 1 39.0 9.2 0.00032 28.9 0.0 40 72-116 46-93 (108)
2 2yuj_A Ubiquitin fusion degrad 16.3 31 0.0011 28.5 0.1 44 4-47 90-137 (190)
3 1zc1_A Ubiquitin fusion degrad 10.2 68 0.0023 26.8 0.4 34 4-37 95-132 (208)
4 3hi2_B Motility quorum-sensing 5.7 1.6E+02 0.0055 21.8 0.5 13 78-90 4-17 (101)
5 2flh_A Cytokinin-specific bind 5.1 1.6E+02 0.0054 22.5 0.2 28 2-33 27-57 (155)
6 2vq5_A S-norcoclaurine synthas 5.0 1.5E+02 0.0051 24.2 0.0 27 2-32 54-82 (201)
7 1d4b_A CIDE B, human cell deat 4.7 1.5E+02 0.0053 22.7 -0.1 23 124-152 95-121 (122)
8 3f1c_A Putative 2-C-methyl-D-e 3.7 1.7E+02 0.006 23.4 -0.6 18 133-152 228-245 (246)
9 3arc_L Photosystem II reaction 3.3 9E+02 0.031 14.5 3.5 26 80-105 6-31 (37)
10 2f8e_A VPG protein; RNA-depend 3.0 3.4E+02 0.012 15.1 0.3 11 78-88 7-17 (26)
No 1
>2lor_A Transmembrane protein 141; helical bundle; NMR {Homo sapiens}
Probab=39.04 E-value=9.2 Score=28.93 Aligned_cols=40 Identities=18% Similarity=0.438 Sum_probs=29.2
Q ss_pred eechhcccCCCccccchhHHhHHHHHHHHHHHHH--------hhhhhhHHHHH
Q psy15113 72 IVGPRMMENRKPYNIKNIILVYNLVQTVYNAYIL--------SYFCEASYLYF 116 (218)
Q Consensus 72 ~~gp~~M~~Rkp~~L~~~~~~yN~~l~~~s~~~~--------~~~C~~~~~f~ 116 (218)
+.++++.++|=||.++ ||+..+++.+-++ .-.|+..|+|.
T Consensus 46 f~~Q~~vqrklpYp~q-----wniLVs~v~~svaSY~VTr~eT~kC~~~Wm~l 93 (108)
T 2lor_A 46 FGLQMFIQRKFPYPLQ-----WSLLVAVVAGSVVSYGVTRVESEKCNNLWLFL 93 (108)
Confidence 4678999999999887 6777766666555 24588888764
No 2
>2yuj_A Ubiquitin fusion degradation 1-like; ubiquitin-dependent proteolytic, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=16.32 E-value=31 Score=28.47 Aligned_cols=44 Identities=20% Similarity=0.335 Sum_probs=30.7
Q ss_pred CccccccceeecccCceeeecc----cceeecchhhhHHhhccCCccc
Q psy15113 4 LIPEWMMTRIDFIKNDIVTLST----LGTVRADAPIYAHNLLSTDEVV 47 (218)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~d~r~ 47 (218)
.+|.|||.-|+.-+||.|+... .|++-+-.|-..+-+--.|++.
T Consensus 90 ~lP~wmm~~L~l~~gd~V~v~~~~LPkgt~vklqP~~~~Fl~i~npKa 137 (190)
T 2yuj_A 90 YLPHWMMQNLLLEEGGLVQVESVNLQVATYSKFQPQSPDFLDITNPKA 137 (190)
T ss_dssp ECCSHHHHHHTCCTTEEEEEEEECCCCCSEEEEEESSHHHHHSSCHHH
T ss_pred EeCHHHHHhcCCCCCCEEEEEEeecCCCcEEEEEECCccccccccHHH
Confidence 4799999999999999987664 5777776665444321255554
No 3
>1zc1_A Ubiquitin fusion degradation protein 1; UFD1, double-PSI-beta-barrel, protein turnover; NMR {Saccharomyces cerevisiae}
Probab=10.17 E-value=68 Score=26.79 Aligned_cols=34 Identities=24% Similarity=0.552 Sum_probs=25.7
Q ss_pred CccccccceeecccCceeeecc----cceeecchhhhH
Q psy15113 4 LIPEWMMTRIDFIKNDIVTLST----LGTVRADAPIYA 37 (218)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~ 37 (218)
.+|.|||.-|+.-.||.|+... .|++-+-.|-..
T Consensus 95 ~lP~wmm~~L~l~~gd~V~i~~~~LPkgt~vklqP~~~ 132 (208)
T 1zc1_A 95 YLPQWMMETLGIQPGSLLQISSTDVPLGQFVKLEPQSV 132 (208)
T ss_dssp EECHHHHHHHTCCTTCEEEEEEEECCCCSEEEEECCHH
T ss_pred EcCHHHHHhcCCCCCCEEEEEEeEcCCCCEEEEeECcc
Confidence 4799999999999999887653 466666666433
No 4
>3hi2_B Motility quorum-sensing regulator MQSR; toxin-antitoxin system, Zn-binding protein, MQSA, YGIU B3022, B3021, stress response; 2.00A {Escherichia coli k-12}
Probab=5.66 E-value=1.6e+02 Score=21.81 Aligned_cols=13 Identities=31% Similarity=0.618 Sum_probs=9.2
Q ss_pred ccCCCc-cccchhH
Q psy15113 78 MENRKP-YNIKNII 90 (218)
Q Consensus 78 M~~Rkp-~~L~~~~ 90 (218)
|++|+| ++|..+-
T Consensus 4 MEKrtPhy~L~~ik 17 (101)
T 3hi2_B 4 MEKRTPHTRLSQVK 17 (101)
T ss_dssp CEESSCSSCHHHHH
T ss_pred CccCCCCCcHHHHH
Confidence 788888 6766554
No 5
>2flh_A Cytokinin-specific binding protein; zeatin, pathogenesis-related proteins, multiple- ligand binding, plant protein; HET: ZEA; 1.20A {Vigna radiata} PDB: 3c0v_A*
Probab=5.07 E-value=1.6e+02 Score=22.51 Aligned_cols=28 Identities=18% Similarity=0.198 Sum_probs=18.6
Q ss_pred CCCccccccceeec---ccCceeeecccceeecch
Q psy15113 2 DSLIPEWMMTRIDF---IKNDIVTLSTLGTVRADA 33 (218)
Q Consensus 2 ~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~ 33 (218)
+.++|.|.|..+.+ +.||- ..|++|.-.
T Consensus 27 ~~l~pk~~P~~i~s~~~~eGdg----g~Gsvr~~~ 57 (155)
T 2flh_A 27 ITVVPKVLPHIVKDVQLIEGDG----GVGTILIFN 57 (155)
T ss_dssp TTHHHHHCTTTEEEEEEEECSS----STTCEEEEE
T ss_pred ccccchhccccceEEEEEcCCC----CCCeEEEEE
Confidence 45779999977766 56772 346666543
No 6
>2vq5_A S-norcoclaurine synthase; lyase, S- norcoclaurine biosynthesis, dopamine, hydroxybenzaldehyde; HET: MSE LDP HBA; 2.09A {Thalictrum flavum} PDB: 2vne_A*
Probab=5.04 E-value=1.5e+02 Score=24.21 Aligned_cols=27 Identities=15% Similarity=0.266 Sum_probs=18.5
Q ss_pred CCCccccccceeeccc--Cceeeecccceeecc
Q psy15113 2 DSLIPEWMMTRIDFIK--NDIVTLSTLGTVRAD 32 (218)
Q Consensus 2 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~ 32 (218)
|.++|.|.|..+.+++ ||- ..|++|.-
T Consensus 54 ~~l~pk~~P~~i~s~e~~GdG----g~GsIR~l 82 (201)
T 2vq5_A 54 AKHLPDLLPGAFEKLEIIGDG----GVGTILDM 82 (201)
T ss_dssp GGGHHHHSTTSCSEEEEESSS----STTCEEEE
T ss_pred ccchhhhCcccceEEEEecCC----CCCeEEEE
Confidence 4678999998877766 763 23666653
No 7
>1d4b_A CIDE B, human cell death-inducing effector B; alpha/beta roll, apoptosis; NMR {Homo sapiens} SCOP: d.15.2.1
Probab=4.74 E-value=1.5e+02 Score=22.68 Aligned_cols=23 Identities=17% Similarity=0.073 Sum_probs=15.5
Q ss_pred cccccccccchhhhccCC--C--CceeEEeecC
Q psy15113 124 LDTPIYWAMYLSVERTSR--D--APIYAHNLLS 152 (218)
Q Consensus 124 ~DTvf~~~~~~~VLRKk~--~--qvsfLHvYHH 152 (218)
=+|.|+ +|++.+ . +...||--||
T Consensus 95 ~nT~lm------vL~~gq~W~p~~~~~~~~~~~ 121 (122)
T 1d4b_A 95 DDTCLM------VLQSGQSWSPTRSGVLHHHHH 121 (122)
T ss_dssp SCCCCC------EECSSCCCCCCCCSCCTTCCC
T ss_pred CCCEEE------EecCCCcccCCCcceeeeccC
Confidence 489999 999864 2 3455665555
No 8
>3f1c_A Putative 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase 2; structural genomics, PSI-2, protein structure initiative; 2.30A {Listeria monocytogenes str} SCOP: c.68.1.0
Probab=3.68 E-value=1.7e+02 Score=23.43 Aligned_cols=18 Identities=6% Similarity=-0.086 Sum_probs=6.1
Q ss_pred chhhhccCCCCceeEEeecC
Q psy15113 133 YLSVERTSRDAPIYAHNLLS 152 (218)
Q Consensus 133 ~~~VLRKk~~qvsfLHvYHH 152 (218)
.+++|+++ .=+-+||-||
T Consensus 228 ae~~l~~~--~~~~~~~~~~ 245 (246)
T 3f1c_A 228 ANAIIQER--IANEGHHHHH 245 (246)
T ss_dssp HHHHHHHH--C---------
T ss_pred HHHHHhcc--cccCcccccC
Confidence 35677777 6778898887
No 9
>3arc_L Photosystem II reaction center protein L; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 1s5l_L* 3a0b_L* 3a0h_L* 2axt_L* 3bz1_L* 3bz2_L* 3kzi_L* 3prq_L* 3prr_L*
Probab=3.35 E-value=9e+02 Score=14.55 Aligned_cols=26 Identities=23% Similarity=0.395 Sum_probs=20.3
Q ss_pred CCCccccchhHHhHHHHHHHHHHHHH
Q psy15113 80 NRKPYNIKNIILVYNLVQTVYNAYIL 105 (218)
Q Consensus 80 ~Rkp~~L~~~~~~yN~~l~~~s~~~~ 105 (218)
|++|.+|.+--..|-+.++..-+..+
T Consensus 6 n~q~VELNRTSLy~GLLlifvlavlF 31 (37)
T 3arc_L 6 NRQPVELNRTSLYLGLLLILVLALLF 31 (37)
T ss_dssp TCCCBCCCHHHHHHHHHHHHHHHHHH
T ss_pred CCCcceechhhHHHHHHHHHHHHHHh
Confidence 67899999999999888776555544
No 10
>2f8e_A VPG protein; RNA-dependent RNA polymerase , protein primer, transferase; HET: U5P; 2.90A {Foot-and-mouth disease virus - type C} PDB: 2d7s_B
Probab=2.96 E-value=3.4e+02 Score=15.14 Aligned_cols=11 Identities=27% Similarity=0.767 Sum_probs=7.9
Q ss_pred ccCCCccccch
Q psy15113 78 MENRKPYNIKN 88 (218)
Q Consensus 78 M~~Rkp~~L~~ 88 (218)
|++.+|.++|.
T Consensus 7 lerq~plkvka 17 (26)
T 2f8e_A 7 LERQRPLKVKA 17 (26)
T ss_pred hhhcCcceeee
Confidence 77778887653
Done!