Query psy15113
Match_columns 218
No_of_seqs 198 out of 1303
Neff 5.6
Searched_HMMs 13730
Date Fri Aug 16 20:57:32 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy15113.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/15113hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2nn6h2 b.84.4.2 (H:25-72) Rib 10.8 55 0.004 19.7 1.6 28 6-33 13-40 (48)
2 d1vf5c3 f.23.23.1 (C:250-286) 8.8 26 0.0019 20.1 -0.6 10 125-140 19-28 (37)
3 d2je6i2 b.84.4.2 (I:7-65) Exos 7.3 89 0.0065 19.2 1.6 28 6-33 21-49 (59)
4 d1xova1 b.34.11.4 (A:181-314) 6.9 51 0.0037 23.2 0.2 14 2-15 81-94 (134)
5 d2axtl1 f.23.31.1 (L:1-37) Pho 6.9 2.2E+02 0.016 15.8 3.5 27 79-105 5-31 (37)
6 d2d8za2 g.39.1.3 (A:33-64) Fou 5.4 75 0.0055 17.5 0.3 15 73-87 10-25 (32)
7 d2ba0a2 b.84.4.2 (A:2-52) Exos 5.2 1.3E+02 0.0097 17.7 1.5 19 15-33 22-40 (51)
8 d1q90a3 f.23.23.1 (A:248-292) 5.0 27 0.0019 20.9 -2.0 12 125-144 18-29 (45)
9 d1d4ba_ d.15.2.1 (A:) Cell dea 4.8 71 0.0052 22.8 -0.1 12 125-142 96-107 (122)
10 d1neea2 g.59.1.1 (A:99-135) Zi 4.4 99 0.0072 17.4 0.3 15 124-148 10-24 (37)
No 1
>d2nn6h2 b.84.4.2 (H:25-72) Ribosomal RNA-processing protein 4, RRP4 {Human (Homo sapiens) [TaxId: 9606]}
Probab=10.78 E-value=55 Score=19.66 Aligned_cols=28 Identities=14% Similarity=0.211 Sum_probs=19.6
Q ss_pred cccccceeecccCceeeecccceeecch
Q psy15113 6 PEWMMTRIDFIKNDIVTLSTLGTVRADA 33 (218)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 33 (218)
|.||.--=-..+++.+.+|..|++...+
T Consensus 13 ~~~mrGHGTy~~~~~i~aSv~G~vervN 40 (48)
T d2nn6h2 13 TGFMRGHGTYMGEEKLIASVAGSVERVN 40 (48)
T ss_dssp TTCCBCTTEEECSSSEEECSSEEEEEET
T ss_pred CCeEcccccEecCCEEEEEEeeeEEEec
Confidence 5566544444567788899999997654
No 2
>d1vf5c3 f.23.23.1 (C:250-286) Cytochrome f subunit of the cytochrome b6f complex, transmembrane anchor {Mastigocladus laminosus [TaxId: 83541]}
Probab=8.77 E-value=26 Score=20.13 Aligned_cols=10 Identities=0% Similarity=0.105 Sum_probs=7.7
Q ss_pred ccccccccchhhhccC
Q psy15113 125 DTPIYWAMYLSVERTS 140 (218)
Q Consensus 125 DTvf~~~~~~~VLRKk 140 (218)
-.+++ ||+||
T Consensus 19 aQi~l------VlKKK 28 (37)
T d1vf5c3 19 AQLML------ILKKK 28 (37)
T ss_dssp HHHHH------HHHTG
T ss_pred HHHHH------HHHHH
Confidence 45677 99999
No 3
>d2je6i2 b.84.4.2 (I:7-65) Exosome complex RNA-binding protein 1, ECR1 {Sulfolobus solfataricus [TaxId: 2287]}
Probab=7.27 E-value=89 Score=19.20 Aligned_cols=28 Identities=7% Similarity=-0.084 Sum_probs=19.0
Q ss_pred ccccc-ceeecccCceeeecccceeecch
Q psy15113 6 PEWMM-TRIDFIKNDIVTLSTLGTVRADA 33 (218)
Q Consensus 6 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 33 (218)
|+|++ ..--+-+|+-+-+|..|++...+
T Consensus 21 ~~~~~~g~~ty~~~~ki~asv~G~v~~~n 49 (59)
T d2je6i2 21 EFQIPWSPYILKINSKYYSTVVGLFDVKD 49 (59)
T ss_dssp CCCCCCCTTEEEETTEEEECSSEEEEEET
T ss_pred CccccCCCEEEecCCEEEEEEEEEEEEEC
Confidence 45554 33334578889999999987654
No 4
>d1xova1 b.34.11.4 (A:181-314) Endolysin Ply, C-terminal domain {Bacteriophage Psa [TaxId: 171618]}
Probab=6.94 E-value=51 Score=23.24 Aligned_cols=14 Identities=36% Similarity=0.650 Sum_probs=11.6
Q ss_pred CCCccccccceeec
Q psy15113 2 DSLIPEWMMTRIDF 15 (218)
Q Consensus 2 ~~~~~~~~~~~~~~ 15 (218)
|--||+|+-|++.+
T Consensus 81 dlripvw~ntklns 94 (134)
T d1xova1 81 DLRIPVWNNTKLNS 94 (134)
T ss_dssp TCCEEEESSTTCSS
T ss_pred cceeeeeccccccc
Confidence 44699999999986
No 5
>d2axtl1 f.23.31.1 (L:1-37) Photosystem II reaction center protein L, PsbL {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=6.91 E-value=2.2e+02 Score=15.77 Aligned_cols=27 Identities=22% Similarity=0.374 Sum_probs=20.4
Q ss_pred cCCCccccchhHHhHHHHHHHHHHHHH
Q psy15113 79 ENRKPYNIKNIILVYNLVQTVYNAYIL 105 (218)
Q Consensus 79 ~~Rkp~~L~~~~~~yN~~l~~~s~~~~ 105 (218)
.|++|.+|++--..|-+.++..-+..+
T Consensus 5 pn~q~veLNrtsLy~GlLlifvl~vLF 31 (37)
T d2axtl1 5 PNRQPVELNRTSLYLGLLLILVLALLF 31 (37)
T ss_dssp SSCCCBCCCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCccccchhhHHHHHHHHHHHHHHH
Confidence 367899999999999887766554444
No 6
>d2d8za2 g.39.1.3 (A:33-64) Four and a half LIM domains protein 2, FHL2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=5.36 E-value=75 Score=17.48 Aligned_cols=15 Identities=20% Similarity=0.443 Sum_probs=10.9
Q ss_pred echhc-ccCCCccccc
Q psy15113 73 VGPRM-MENRKPYNIK 87 (218)
Q Consensus 73 ~gp~~-M~~Rkp~~L~ 87 (218)
.|+|+ ||+-+||=++
T Consensus 10 ~GQry~~rd~~PyC~~ 25 (32)
T d2d8za2 10 SGQRFTARDDFAYCLN 25 (32)
T ss_dssp TTSCCEESSSSEECHH
T ss_pred cCceeeecCCCeehHH
Confidence 57775 8888998543
No 7
>d2ba0a2 b.84.4.2 (A:2-52) Exosome complex RNA-binding protein 1, ECR1 {Archaeoglobus fulgidus [TaxId: 2234]}
Probab=5.16 E-value=1.3e+02 Score=17.69 Aligned_cols=19 Identities=11% Similarity=0.270 Sum_probs=14.6
Q ss_pred cccCceeeecccceeecch
Q psy15113 15 FIKNDIVTLSTLGTVRADA 33 (218)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~ 33 (218)
+.+|+.+-+|..|++...+
T Consensus 22 y~~~~~i~ss~~G~v~~~n 40 (51)
T d2ba0a2 22 YVEGGKVYAKIIGLFDQTE 40 (51)
T ss_dssp EEETTEEEECSSEEEEECS
T ss_pred EEECCEEEEEEEEEEEEEC
Confidence 4468888999999986554
No 8
>d1q90a3 f.23.23.1 (A:248-292) Cytochrome f subunit of the cytochrome b6f complex, transmembrane anchor {Chlamydomonas reinhardtii [TaxId: 3055]}
Probab=5.03 E-value=27 Score=20.86 Aligned_cols=12 Identities=8% Similarity=0.016 Sum_probs=9.0
Q ss_pred ccccccccchhhhccCCCCc
Q psy15113 125 DTPIYWAMYLSVERTSRDAP 144 (218)
Q Consensus 125 DTvf~~~~~~~VLRKk~~qv 144 (218)
-.+|+ ||+|| |.
T Consensus 18 aQi~L------VLKKK--Qf 29 (45)
T d1q90a3 18 TQVLL------VLKKK--QF 29 (45)
T ss_dssp HHHHH------HHHHH--HH
T ss_pred HHHHH------HHHHH--HH
Confidence 45678 99999 64
No 9
>d1d4ba_ d.15.2.1 (A:) Cell death-inducing effector B (CIDE-B), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=4.80 E-value=71 Score=22.75 Aligned_cols=12 Identities=25% Similarity=0.354 Sum_probs=9.6
Q ss_pred ccccccccchhhhccCCC
Q psy15113 125 DTPIYWAMYLSVERTSRD 142 (218)
Q Consensus 125 DTvf~~~~~~~VLRKk~~ 142 (218)
||+|+ +|++.++
T Consensus 96 nT~lm------vL~~gqk 107 (122)
T d1d4ba_ 96 DTCLM------VLQSGQS 107 (122)
T ss_dssp CCCCC------EECSSCC
T ss_pred CCEEE------EECCCCc
Confidence 79999 9988544
No 10
>d1neea2 g.59.1.1 (A:99-135) Zinc-binding domain of translation initiation factor 2 beta {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=4.37 E-value=99 Score=17.39 Aligned_cols=15 Identities=20% Similarity=0.047 Sum_probs=10.1
Q ss_pred cccccccccchhhhccCCCCceeEE
Q psy15113 124 LDTPIYWAMYLSVERTSRDAPIYAH 148 (218)
Q Consensus 124 ~DTvf~~~~~~~VLRKk~~qvsfLH 148 (218)
-||-+. |.+.+.|||
T Consensus 10 pDT~l~----------ke~R~~~l~ 24 (37)
T d1neea2 10 PDTRII----------REGRISLLK 24 (37)
T ss_dssp CSSCCE----------EETTTTEEE
T ss_pred CCCEEE----------EcCCEEEEE
Confidence 477765 445788886
Done!