RPS-BLAST 2.2.26 [Sep-21-2011]

Database: CDD.v3.10 
           44,354 sequences; 10,937,602 total letters

Searching..................................................done

Query= psy15113
         (218 letters)



>gnl|CDD|216332 pfam01151, ELO, GNS1/SUR4 family.  Members of this family are
           involved in long chain fatty acid elongation systems
           that produce the 26-carbon precursors for ceramide and
           sphingolipid synthesis. Predicted to be integral
           membrane proteins, in eukaryotes they are probably
           located on the endoplasmic reticulum. Yeast ELO3 affects
           plasma membrane H+-ATPase activity, and may act on a
           glucose-signaling pathway that controls the expression
           of several genes that are transcriptionally regulated by
           glucose such as PMA1.
          Length = 244

 Score = 69.6 bits (171), Expect = 2e-14
 Identities = 31/105 (29%), Positives = 50/105 (47%), Gaps = 30/105 (28%)

Query: 51  FLMPSWLPVTSIVVLYLIFVKIVGPRMMENRKPYNIKNIILVYNLVQTVYNAYILSYFCE 110
            L+ S  PV  I+VLYL+FV + GP++M NRKP+++K +++V+NL   + + Y       
Sbjct: 1   PLLSSPWPVILIIVLYLVFVFL-GPKIMRNRKPFDLKRLLIVHNLFLVLLSLYGFYGLLA 59

Query: 111 AS-----------------------------YLYFISKIVDLLDT 126
            +                             Y  F+SK ++LLDT
Sbjct: 60  GAGWGRGLYLALCVCYSFDPGAIRMGLVGFWYWLFLSKFLELLDT 104



 Score = 61.1 bits (149), Expect = 2e-11
 Identities = 22/53 (41%), Positives = 37/53 (69%), Gaps = 1/53 (1%)

Query: 161 FLMPSWLPVTSIVVLYLIFVKIVGPRMMENRKPYNIKNIILVYNLVQTVYNAL 213
            L+ S  PV  I+VLYL+FV + GP++M NRKP+++K +++V+NL   + +  
Sbjct: 1   PLLSSPWPVILIIVLYLVFVFL-GPKIMRNRKPFDLKRLLIVHNLFLVLLSLY 52


  Database: CDD.v3.10
    Posted date:  Mar 20, 2013  7:55 AM
  Number of letters in database: 10,937,602
  Number of sequences in database:  44,354
  
Lambda     K      H
   0.327    0.141    0.434 

Gapped
Lambda     K      H
   0.267   0.0627    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 11,367,428
Number of extensions: 1083390
Number of successful extensions: 1287
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1285
Number of HSP's successfully gapped: 24
Length of query: 218
Length of database: 10,937,602
Length adjustment: 93
Effective length of query: 125
Effective length of database: 6,812,680
Effective search space: 851585000
Effective search space used: 851585000
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 57 (26.0 bits)