RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy15113
         (218 letters)



>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
           acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
           synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
          Length = 2006

 Score = 43.1 bits (101), Expect = 4e-05
 Identities = 45/229 (19%), Positives = 77/229 (33%), Gaps = 89/229 (38%)

Query: 14  DFIKNDIVTLSTLGTVRADA-PIYAHNLLSTDEVVDNWFLMPS------WL---PVTS-- 61
           D IK    TLS L     DA  ++   L   +  +  W   PS      +L   P+ S  
Sbjct: 186 DLIKFSAETLSELIRTTLDAEKVFTQGL---N--ILEWLENPSNTPDKDYLLSIPI-SCP 239

Query: 62  -IVVL----YLIFVKIVGPRMMENRKPYNIKNIIL-VYNLVQTVYNAYILSY------FC 109
            I V+    Y++  K++G        P  +++ +       Q +  A  ++       F 
Sbjct: 240 LIGVIQLAHYVVTAKLLGFT------PGELRSYLKGATGHSQGLVTAVAIAETDSWESFF 293

Query: 110 EAS-----YLYFI---------------SKIVDLLD------TPIYWAMYLSVERTSRDA 143
            +       L+FI               S + D L+      +P    M LS+   +++ 
Sbjct: 294 VSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSP----M-LSISNLTQEQ 348

Query: 144 PIYAHNLLSTDEVVD--NWFLMPSWLPVTSIVVLYLI-----FVKIVGP 185
                      + V+  N     S LP    V + L+      V + GP
Sbjct: 349 ---------VQDYVNKTN-----SHLPAGKQVEISLVNGAKNLV-VSGP 382


>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
           programmed cell death; HET: DTP; 6.90A {Drosophila
           melanogaster} PDB: 3iz8_A*
          Length = 1221

 Score = 27.5 bits (60), Expect = 3.8
 Identities = 29/166 (17%), Positives = 62/166 (37%), Gaps = 32/166 (19%)

Query: 68  IFVKIVG------PRMMENRKPYNIKNII--LVYNLVQTVYNAYILSYFCEASYLYFISK 119
           + +K +       PR +    P  + +II   + + + T          C+      I  
Sbjct: 306 LLLKYLDCRPQDLPREVLTTNPRRL-SIIAESIRDGLAT--WDNWKHVNCDK-LTTIIES 361

Query: 120 IVDLLDTPIYWAMY--LSVERTSRDAPIYAHNL------LSTDEVVD------NWFLMPS 165
            +++L+   Y  M+  LSV      A I    L      +   +V+        + L+  
Sbjct: 362 SLNVLEPAEYRKMFDRLSVFP--PSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEK 419

Query: 166 WLPVTSIVVLYLIFVKIVGPRMMENRKPYNIKNIILVYNLVQTVYN 211
             P  S + +  I++++      EN    + ++I+  YN+ +T  +
Sbjct: 420 Q-PKESTISIPSIYLELKVKL--ENEYALH-RSIVDHYNIPKTFDS 461


>1w6u_A 2,4-dienoyl-COA reductase, mitochondrial precursor; short chain
           dehydrogenase, beta- oxidation, NADP, oxidoreductase;
           HET: HXC NAP; 1.75A {Homo sapiens} SCOP: c.2.1.2 PDB:
           1w73_A* 1w8d_A*
          Length = 302

 Score = 26.8 bits (60), Expect = 6.0
 Identities = 4/36 (11%), Positives = 13/36 (36%), Gaps = 4/36 (11%)

Query: 71  KIVGPRMMENRKPYNIKNIILVYNLV----QTVYNA 102
             +G ++++ +K     +I  +Y            +
Sbjct: 144 LEIGKQLIKAQKGAAFLSITTIYAETGSGFVVPSAS 179



 Score = 26.8 bits (60), Expect = 6.0
 Identities = 4/36 (11%), Positives = 13/36 (36%), Gaps = 4/36 (11%)

Query: 181 KIVGPRMMENRKPYNIKNIILVYNLV----QTVYNA 212
             +G ++++ +K     +I  +Y            +
Sbjct: 144 LEIGKQLIKAQKGAAFLSITTIYAETGSGFVVPSAS 179


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.327    0.141    0.434 

Gapped
Lambda     K      H
   0.267   0.0513    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,404,045
Number of extensions: 194773
Number of successful extensions: 389
Number of sequences better than 10.0: 1
Number of HSP's gapped: 389
Number of HSP's successfully gapped: 14
Length of query: 218
Length of database: 6,701,793
Length adjustment: 90
Effective length of query: 128
Effective length of database: 4,188,903
Effective search space: 536179584
Effective search space used: 536179584
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 55 (25.5 bits)