BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy15116
(78 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2JV3|A Chain A, Ets-1 Pnt Domain (29-138) Nmr Structure Ensemble
Length = 110
Score = 96.3 bits (238), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 42/68 (61%), Positives = 53/68 (77%)
Query: 6 DPRQWSESNVAQWLCWAIREFSLEGVTLHQFYMRGKDICSMGKESFLARAPPFMGDILWE 65
DPRQW+E++V W+ WA+ EFSL+GV +F M G +C++GKE FL AP F+GDILWE
Sbjct: 40 DPRQWTETHVRDWVMWAVNEFSLKGVDFQKFCMSGAALCALGKECFLELAPDFVGDILWE 99
Query: 66 HLEILQKE 73
HLEILQKE
Sbjct: 100 HLEILQKE 107
>pdb|2KMD|A Chain A, Ras Signaling Requires Dynamic Properties Of Ets1 For
Phosphorylation- Enhanced Binding To Co-Activator Cbp
Length = 113
Score = 95.9 bits (237), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 42/68 (61%), Positives = 53/68 (77%)
Query: 6 DPRQWSESNVAQWLCWAIREFSLEGVTLHQFYMRGKDICSMGKESFLARAPPFMGDILWE 65
DPRQW+E++V W+ WA+ EFSL+GV +F M G +C++GKE FL AP F+GDILWE
Sbjct: 43 DPRQWTETHVRDWVMWAVNEFSLKGVDFQKFCMSGAALCALGKECFLELAPDFVGDILWE 102
Query: 66 HLEILQKE 73
HLEILQKE
Sbjct: 103 HLEILQKE 110
>pdb|1SXD|A Chain A, Solution Structure Of The Pointed (Pnt) Domain From
Mgabpa
Length = 91
Score = 64.7 bits (156), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 28/71 (39%), Positives = 42/71 (59%), Gaps = 2/71 (2%)
Query: 6 DPRQWSESNVAQWLCWAIREFSLEGVTLHQFYMRGKDICSMGKESFLARAPPFMGDILWE 65
DP WS V W+ W ++EFS+ + L + G+++CS+ +E F R P G+ILW
Sbjct: 22 DPIHWSTDQVLHWVVWVMKEFSMTDIDLTTLNISGRELCSLNQEDFFQRVP--RGEILWS 79
Query: 66 HLEILQKEYLV 76
HLE+L+K L
Sbjct: 80 HLELLRKYVLA 90
>pdb|1LKY|B Chain B, Structure Of The Wild-Type Tel-Sam Polymer
pdb|1LKY|D Chain D, Structure Of The Wild-Type Tel-Sam Polymer
pdb|1LKY|F Chain F, Structure Of The Wild-Type Tel-Sam Polymer
Length = 77
Score = 57.8 bits (138), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 30/67 (44%), Positives = 41/67 (61%), Gaps = 1/67 (1%)
Query: 7 PRQWSESNVAQWLCWAIREFSLEGVTLHQFYMRGKDICSMGKESFLARAPPFMGDILWEH 66
P WS +VAQWL WA EFSL + + F M GKD+ + KE F R+ P GD+L+E
Sbjct: 12 PIYWSRDDVAQWLKWAENEFSLRPIDSNTFEMNGKDLLLLTKEDFRYRS-PHSGDVLYEL 70
Query: 67 LEILQKE 73
L+ + K+
Sbjct: 71 LQHILKQ 77
>pdb|2YTU|A Chain A, Solution Structure Of The Sam_pnt-Domain Of The Human
Friend Leukemiaintegration 1 Transcription Factor
Length = 128
Score = 56.6 bits (135), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 43/74 (58%), Gaps = 1/74 (1%)
Query: 6 DPRQWSESNVAQWLCWAIREFSLEGVTLHQF-YMRGKDICSMGKESFLARAPPFMGDILW 64
DP W++ +V QWL WAI+E+SL + F M GK++C M KE FL + ++L
Sbjct: 37 DPTLWTQEHVRQWLEWAIKEYSLMEIDTSFFQNMDGKELCKMNKEDFLRATTLYNTEVLL 96
Query: 65 EHLEILQKEYLVIF 78
HL L++ L+ +
Sbjct: 97 SHLSYLRESSLLAY 110
>pdb|1SXE|A Chain A, The Solution Structure Of The Pointed (Pnt) Domain From
The Transcrition Factor Erg
Length = 97
Score = 56.2 bits (134), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 28/71 (39%), Positives = 40/71 (56%), Gaps = 1/71 (1%)
Query: 6 DPRQWSESNVAQWLCWAIREFSLEGVTLHQF-YMRGKDICSMGKESFLARAPPFMGDILW 64
DP WS +V QWL WA++E+ L V + F + GK++C M K+ F P + DIL
Sbjct: 26 DPTLWSTDHVRQWLEWAVKEYGLPDVNILLFQNIDGKELCKMTKDDFQRLTPSYNADILL 85
Query: 65 EHLEILQKEYL 75
HL L++ L
Sbjct: 86 SHLHYLRETPL 96
>pdb|2QB0|B Chain B, Structure Of The 2tel Crystallization Module Fused To T4
Lysozyme With An Ala-Gly-Pro Linker.
pdb|2QB0|D Chain D, Structure Of The 2tel Crystallization Module Fused To T4
Lysozyme With An Ala-Gly-Pro Linker
Length = 241
Score = 55.8 bits (133), Expect = 6e-09, Method: Composition-based stats.
Identities = 29/67 (43%), Positives = 40/67 (59%), Gaps = 1/67 (1%)
Query: 7 PRQWSESNVAQWLCWAIREFSLEGVTLHQFYMRGKDICSMGKESFLARAPPFMGDILWEH 66
P WS +VAQWL WA EFSL + + F M GK + + KE F R+ P GD+L+E
Sbjct: 12 PIYWSRDDVAQWLKWAENEFSLRPIDSNTFEMNGKALLLLTKEDFRYRS-PHSGDVLYEL 70
Query: 67 LEILQKE 73
L+ + K+
Sbjct: 71 LQHILKQ 77
>pdb|2QAR|B Chain B, Structure Of The 2tel Crystallization Module Fused To T4
Lysozyme With A Helical Linker.
pdb|2QAR|E Chain E, Structure Of The 2tel Crystallization Module Fused To T4
Lysozyme With A Helical Linker
Length = 93
Score = 54.7 bits (130), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 29/67 (43%), Positives = 40/67 (59%), Gaps = 1/67 (1%)
Query: 7 PRQWSESNVAQWLCWAIREFSLEGVTLHQFYMRGKDICSMGKESFLARAPPFMGDILWEH 66
P WS +VAQWL WA EFSL + + F M GK + + KE F R+ P GD+L+E
Sbjct: 12 PIYWSRDDVAQWLKWAENEFSLSPIDSNTFEMNGKALLLLTKEDFRYRS-PHSGDVLYEL 70
Query: 67 LEILQKE 73
L+ + K+
Sbjct: 71 LQHILKQ 77
>pdb|2QB1|A Chain A, 2tel Crystallization Module
pdb|2QB1|B Chain B, 2tel Crystallization Module
Length = 78
Score = 53.5 bits (127), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 28/62 (45%), Positives = 37/62 (59%), Gaps = 1/62 (1%)
Query: 7 PRQWSESNVAQWLCWAIREFSLEGVTLHQFYMRGKDICSMGKESFLARAPPFMGDILWEH 66
P WS +VAQWL WA EFSL + + F M GK + + KE F R+ P GD+L+E
Sbjct: 12 PIYWSRDDVAQWLKWAENEFSLRPIDSNTFEMNGKALLLLTKEDFRYRS-PHSGDVLYEL 70
Query: 67 LE 68
L+
Sbjct: 71 LQ 72
>pdb|1X66|A Chain A, Solution Structure Of The Sam_pnt-Domain Of The Human
Friend Leukemiaintegration 1 Transcription Factor
Length = 98
Score = 53.1 bits (126), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 40/68 (58%), Gaps = 1/68 (1%)
Query: 6 DPRQWSESNVAQWLCWAIREFSLEGVTLHQF-YMRGKDICSMGKESFLARAPPFMGDILW 64
DP W++ +V QWL WAI+E+SL + F M GK++C M KE FL + ++L
Sbjct: 23 DPTLWTQEHVRQWLEWAIKEYSLMEIDTSFFQNMDGKELCKMNKEDFLRATTLYNTEVLL 82
Query: 65 EHLEILQK 72
HL L++
Sbjct: 83 SHLSYLRE 90
>pdb|1LKY|A Chain A, Structure Of The Wild-Type Tel-Sam Polymer
pdb|1LKY|C Chain C, Structure Of The Wild-Type Tel-Sam Polymer
pdb|1LKY|E Chain E, Structure Of The Wild-Type Tel-Sam Polymer
Length = 77
Score = 52.4 bits (124), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 29/67 (43%), Positives = 39/67 (58%), Gaps = 1/67 (1%)
Query: 7 PRQWSESNVAQWLCWAIREFSLEGVTLHQFYMRGKDICSMGKESFLARAPPFMGDILWEH 66
P WS +VAQWL WA EFSL + + F M GK + + KE F R+ P GD L+E
Sbjct: 12 PIYWSRDDVAQWLKWAENEFSLRPIDSNTFEMNGKALLLLTKEDFRYRS-PHSGDRLYEL 70
Query: 67 LEILQKE 73
L+ + K+
Sbjct: 71 LQHILKQ 77
>pdb|2QB0|A Chain A, Structure Of The 2tel Crystallization Module Fused To T4
Lysozyme With An Ala-Gly-Pro Linker.
pdb|2QB0|C Chain C, Structure Of The 2tel Crystallization Module Fused To T4
Lysozyme With An Ala-Gly-Pro Linker
Length = 77
Score = 52.0 bits (123), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 29/67 (43%), Positives = 39/67 (58%), Gaps = 1/67 (1%)
Query: 7 PRQWSESNVAQWLCWAIREFSLEGVTLHQFYMRGKDICSMGKESFLARAPPFMGDILWEH 66
P WS +VAQWL WA EFSL + + F M GK + + KE F R+ P GD L+E
Sbjct: 12 PIYWSRDDVAQWLKWAENEFSLRPIDSNTFEMNGKALLLLTKEDFRYRS-PHSGDELYEL 70
Query: 67 LEILQKE 73
L+ + K+
Sbjct: 71 LQHILKQ 77
>pdb|2QAR|A Chain A, Structure Of The 2tel Crystallization Module Fused To T4
Lysozyme With A Helical Linker.
pdb|2QAR|D Chain D, Structure Of The 2tel Crystallization Module Fused To T4
Lysozyme With A Helical Linker
Length = 86
Score = 51.6 bits (122), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 29/67 (43%), Positives = 39/67 (58%), Gaps = 1/67 (1%)
Query: 7 PRQWSESNVAQWLCWAIREFSLEGVTLHQFYMRGKDICSMGKESFLARAPPFMGDILWEH 66
P WS +VAQWL WA EFSL + + F M GK + + KE F R+ P GD L+E
Sbjct: 13 PIYWSRDDVAQWLKWAENEFSLSPIDSNTFEMNGKALLLLTKEDFRYRS-PHSGDELYEL 71
Query: 67 LEILQKE 73
L+ + K+
Sbjct: 72 LQHILKQ 78
>pdb|2DKX|A Chain A, Solution Structure Of The Sam_pnt-Domain Of Ets
Transcription Factor Pdef (Prostate Ets)
Length = 96
Score = 50.8 bits (120), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 25/64 (39%), Positives = 37/64 (57%), Gaps = 1/64 (1%)
Query: 6 DPRQWSESNVAQWLCWAIREFSLEGVTLHQFYMRGKDICSMGKESFLARAPPFMGDILWE 65
DP WS SNV +WL W ++ L + + GK++C+M +E F R+ P GD+L
Sbjct: 23 DPMDWSPSNVQKWLLWTEHQYRLPPMGKAFQELAGKELCAMSEEQFRQRS-PLGGDVLHA 81
Query: 66 HLEI 69
HL+I
Sbjct: 82 HLDI 85
>pdb|1JI7|A Chain A, Crystal Structure Of Tel Sam Polymer
pdb|1JI7|B Chain B, Crystal Structure Of Tel Sam Polymer
pdb|1JI7|C Chain C, Crystal Structure Of Tel Sam Polymer
Length = 89
Score = 49.7 bits (117), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 28/67 (41%), Positives = 38/67 (56%), Gaps = 1/67 (1%)
Query: 7 PRQWSESNVAQWLCWAIREFSLEGVTLHQFYMRGKDICSMGKESFLARAPPFMGDILWEH 66
P WS +VAQWL WA EFSL + + F GK + + KE F R+ P GD L+E
Sbjct: 12 PIYWSRDDVAQWLKWAENEFSLRPIDSNTFEXNGKALLLLTKEDFRYRS-PHSGDELYEL 70
Query: 67 LEILQKE 73
L+ + K+
Sbjct: 71 LQHILKQ 77
>pdb|1SV0|A Chain A, Crystal Structure Of Yan-SamMAE-Sam Complex
pdb|1SV0|B Chain B, Crystal Structure Of Yan-SamMAE-Sam Complex
pdb|1SV4|A Chain A, Crystal Structure Of Yan-Sam
pdb|1SV4|B Chain B, Crystal Structure Of Yan-Sam
Length = 85
Score = 45.8 bits (107), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 35/65 (53%), Gaps = 1/65 (1%)
Query: 6 DPRQWSESNVAQWLCWAIREFSLEGVTLHQFYMRGKDICSMGKESFLARAPPFMGDILWE 65
DPR WS +V +L + +REF L + F M GK +C + + F R P GD+L
Sbjct: 9 DPRLWSREDVLVFLRFCVREFDLPKLDFDLFQMNGKRLCLLTRADFGHRC-PGAGDVLHN 67
Query: 66 HLEIL 70
L++L
Sbjct: 68 VLQML 72
>pdb|1SV0|C Chain C, Crystal Structure Of Yan-SamMAE-Sam Complex
pdb|1SV0|D Chain D, Crystal Structure Of Yan-SamMAE-Sam Complex
Length = 82
Score = 34.3 bits (77), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 33/66 (50%), Gaps = 3/66 (4%)
Query: 6 DPRQWSESNVAQWLC-WAIRE-FSLEGVTLHQFYMRGKDICSMGKESFLARAPPFMGDIL 63
DPR W+ ++V +WL A+ E + +F M GK +C M + +L R P G +L
Sbjct: 10 DPRDWTRADVWKWLINMAVSEGLEVTAELPQKFPMNGKALCLMSLDMYLCRV-PVGGKML 68
Query: 64 WEHLEI 69
+ +
Sbjct: 69 YRDFRV 74
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.326 0.140 0.473
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,633,873
Number of Sequences: 62578
Number of extensions: 86070
Number of successful extensions: 210
Number of sequences better than 100.0: 17
Number of HSP's better than 100.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 188
Number of HSP's gapped (non-prelim): 17
length of query: 78
length of database: 14,973,337
effective HSP length: 47
effective length of query: 31
effective length of database: 12,032,171
effective search space: 372997301
effective search space used: 372997301
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 45 (21.9 bits)