Query psy15116
Match_columns 78
No_of_seqs 101 out of 248
Neff 6.3
Searched_HMMs 46136
Date Fri Aug 16 21:00:34 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy15116.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/15116hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd08540 SAM_PNT-ERG Sterile al 100.0 6.4E-39 1.4E-43 193.2 8.0 73 3-75 1-74 (75)
2 cd08534 SAM_PNT-GABP-alpha Ste 100.0 1.3E-38 2.8E-43 197.2 8.1 75 2-76 14-88 (89)
3 cd08533 SAM_PNT-ETS-1,2 Steril 100.0 1.5E-38 3.3E-43 189.9 8.1 71 4-74 1-71 (71)
4 cd08531 SAM_PNT-ERG_FLI-1 Ster 100.0 1.7E-38 3.7E-43 191.4 8.0 73 3-75 1-74 (75)
5 cd08542 SAM_PNT-ETS-1 Sterile 100.0 3.1E-38 6.8E-43 195.0 8.4 74 2-75 14-87 (88)
6 cd08532 SAM_PNT-PDEF-like Ster 100.0 4.1E-37 8.8E-42 185.8 8.0 71 2-74 5-75 (76)
7 cd08543 SAM_PNT-ETS-2 Sterile 100.0 5.7E-37 1.2E-41 189.7 8.3 73 2-74 14-86 (89)
8 cd08541 SAM_PNT-FLI-1 Sterile 100.0 5.2E-37 1.1E-41 190.6 8.0 74 1-74 11-85 (91)
9 cd08535 SAM_PNT-Tel_Yan Steril 100.0 9.3E-36 2E-40 176.6 7.7 67 5-72 1-67 (68)
10 smart00251 SAM_PNT SAM / Point 100.0 4.2E-35 9.1E-40 178.9 8.2 71 2-73 12-82 (82)
11 cd08203 SAM_PNT Sterile alpha 100.0 5.7E-34 1.2E-38 167.7 7.2 66 6-72 1-66 (66)
12 PF02198 SAM_PNT: Sterile alph 100.0 6.1E-34 1.3E-38 173.7 6.6 74 1-74 11-84 (84)
13 cd08536 SAM_PNT-Mae Sterile al 100.0 1.8E-33 3.9E-38 165.9 7.5 64 6-70 1-64 (66)
14 cd08538 SAM_PNT-ESE-2-like Ste 100.0 1.2E-32 2.7E-37 166.9 7.6 71 3-74 3-75 (78)
15 cd08757 SAM_PNT_ESE Sterile al 100.0 2.1E-32 4.6E-37 162.0 7.4 65 6-71 1-67 (68)
16 cd08537 SAM_PNT-ESE-1-like Ste 100.0 2E-30 4.3E-35 156.7 6.5 69 4-73 7-77 (78)
17 cd08539 SAM_PNT-ESE-3-like Ste 100.0 4E-30 8.7E-35 154.4 6.2 69 5-74 3-73 (74)
18 KOG3804|consensus 99.5 4.6E-15 1E-19 111.3 4.5 72 2-74 57-130 (390)
19 KOG3805|consensus 97.8 3.7E-06 8E-11 62.4 -0.2 69 3-73 152-224 (361)
20 PF00536 SAM_1: SAM domain (St 97.2 0.00054 1.2E-08 38.6 3.5 60 8-71 1-64 (64)
21 PF07647 SAM_2: SAM domain (St 97.0 0.00082 1.8E-08 38.0 2.9 61 7-71 1-66 (66)
22 cd00166 SAM Sterile alpha moti 96.4 0.0042 9.1E-08 34.1 3.1 48 9-60 1-50 (63)
23 KOG4375|consensus 95.8 0.0041 9E-08 45.2 1.1 50 8-60 208-258 (272)
24 smart00454 SAM Sterile alpha m 95.8 0.012 2.6E-07 32.5 2.8 61 7-71 1-66 (68)
25 PF13495 Phage_int_SAM_4: Phag 69.9 4.6 0.0001 23.0 2.2 24 5-28 36-59 (85)
26 cd00014 CH Calponin homology d 67.9 1.7 3.7E-05 25.7 0.0 37 12-48 3-40 (107)
27 PF00307 CH: Calponin homology 67.2 7.5 0.00016 22.9 2.8 36 12-47 1-38 (108)
28 KOG3678|consensus 65.8 3.1 6.6E-05 33.7 1.0 62 8-72 463-528 (832)
29 COG3208 GrsT Predicted thioest 63.4 4 8.7E-05 29.5 1.2 36 6-42 187-222 (244)
30 PF11516 DUF3220: Protein of u 62.8 5.1 0.00011 24.8 1.4 22 47-69 47-68 (106)
31 smart00033 CH Calponin homolog 62.5 2.7 5.9E-05 24.6 0.2 35 12-46 2-37 (103)
32 PF10281 Ish1: Putative stress 60.3 7.8 0.00017 19.7 1.7 12 9-20 3-14 (38)
33 PRK06474 hypothetical protein; 58.2 16 0.00035 24.6 3.4 32 46-77 27-58 (178)
34 PF09235 Ste50p-SAM: Ste50p, s 58.0 3.1 6.7E-05 25.0 -0.1 49 6-57 2-55 (75)
35 PF09447 Cnl2_NKP2: Cnl2/NKP2 53.4 14 0.00031 21.6 2.2 29 46-74 20-53 (67)
36 PF15142 INCA1: INCA1 51.8 7.2 0.00016 26.6 0.8 16 54-69 24-39 (178)
37 PF02184 HAT: HAT (Half-A-TPR) 48.0 8.3 0.00018 19.5 0.5 11 14-24 19-29 (32)
38 PF12621 DUF3779: Phosphate me 46.9 11 0.00025 23.0 1.1 36 1-41 48-84 (95)
39 PF01638 HxlR: HxlR-like helix 46.3 37 0.0008 20.0 3.3 30 47-76 20-49 (90)
40 PF12840 HTH_20: Helix-turn-he 46.2 25 0.00053 19.2 2.4 18 59-76 37-54 (61)
41 PF14436 EndoU_bacteria: Bacte 44.2 26 0.00056 22.0 2.5 23 6-28 70-92 (128)
42 COG1092 Predicted SAM-dependen 41.8 15 0.00033 28.1 1.3 66 3-77 265-333 (393)
43 PF01022 HTH_5: Bacterial regu 39.4 34 0.00073 17.8 2.1 27 50-77 20-46 (47)
44 PF08133 Nuclease_act: Anticod 30.0 51 0.0011 15.8 1.7 20 8-27 2-21 (26)
45 KOG1899|consensus 29.5 16 0.00035 30.3 -0.2 44 8-55 548-593 (861)
46 COG3143 CheZ Chemotaxis protei 29.4 56 0.0012 23.2 2.4 47 13-69 92-138 (217)
47 PF11393 IcmL: Macrophage kill 29.2 96 0.0021 19.2 3.3 50 2-53 7-57 (108)
48 COG4672 gp18 Phage-related pro 28.8 8.9 0.00019 27.4 -1.6 24 20-43 49-72 (231)
49 KOG0249|consensus 27.7 36 0.00077 28.7 1.4 24 4-27 755-779 (916)
50 PF05930 Phage_AlpA: Prophage 27.6 20 0.00044 19.1 0.0 12 8-19 40-51 (51)
51 PHA00738 putative HTH transcri 27.3 1.1E+02 0.0023 19.6 3.3 27 50-77 31-57 (108)
52 PRK09267 flavodoxin FldA; Vali 27.0 77 0.0017 20.4 2.7 24 5-28 146-169 (169)
53 PF14817 HAUS5: HAUS augmin-li 25.8 1.2E+02 0.0026 24.9 4.0 38 17-67 5-42 (632)
54 COG0056 AtpA F0F1-type ATP syn 25.7 28 0.0006 27.7 0.5 18 58-75 286-303 (504)
55 TIGR01594 holin_lambda phage h 24.2 79 0.0017 19.9 2.3 21 2-24 1-21 (107)
56 PF02209 VHP: Villin headpiece 23.5 75 0.0016 16.3 1.7 10 43-52 10-19 (36)
57 KOG3557|consensus 23.1 86 0.0019 26.1 2.7 43 11-57 635-678 (721)
58 KOG0373|consensus 22.9 86 0.0019 23.1 2.5 54 14-74 5-69 (306)
59 KOG1738|consensus 20.3 28 0.0006 28.5 -0.5 51 7-57 4-54 (638)
No 1
>cd08540 SAM_PNT-ERG Sterile alpha motif (SAM)/Pointed domain of ERG transcription factor. SAM Pointed domain of ERG subfamily of ETS transcriptional regulators is a putative protein-protein interaction domain. It may participate in formation of homodimers or heterodimers with ETS-2, Fli-1, ER81, and Pu-1. However, dimeric forms are inactive and SAM Pointed domain is not essential for dimerization, since ER81 and Pu-1 do not have it. In mouse, a regulator of this type binds the ESET histone H3-specific methyltransferase (human homolog is SETDB1), followed by modification of local chromatin structure through histone methylation. ERG regulators are involved in endothelial cell differentiation, bone morphogenesis and neural crest development. The Erg gene is a proto-oncogene. It is a target of chromosomal translocations resulting in fusions with new neighboring genes. Chimeric proteins were found in solid tumors such as myeloid leukemia or Ewing's sarcoma. Members of this subfamily are po
Probab=100.00 E-value=6.4e-39 Score=193.23 Aligned_cols=73 Identities=38% Similarity=0.784 Sum_probs=70.7
Q ss_pred cCCCccccCHHHHHHHHHHHHHhcCCCCCCCCCC-CCCHHHHhcCCHHHHhhhCCCCChHHHHHHHHHHHHhcc
Q psy15116 3 TLDDPRQWSESNVAQWLCWAIREFSLEGVTLHQF-YMRGKDICSMGKESFLARAPPFMGDILWEHLEILQKEYL 75 (78)
Q Consensus 3 vP~DP~~Ws~~~V~~Wl~W~~~ef~L~~~~~~~f-~m~G~~LC~lt~edF~~~~p~~~GdiL~~hL~~lk~~~~ 75 (78)
||+||++||++||.+||+|+++||+|+++++++| .|||++||.||+|||.+++|+++|||||+||++||++.+
T Consensus 1 iP~DP~~Wt~~~V~~WL~Wa~~ef~L~~~~~~~F~~m~Gk~LC~LskedF~~~ap~~~GdiL~~HL~~Lr~~~~ 74 (75)
T cd08540 1 VPADPTLWSTDHVRQWLEWAVKEYGLPDVDVLLFQNIDGKELCKMTKDDFQRLTPSYNADILLSHLHYLRETPL 74 (75)
T ss_pred CCCChhhcCHHHHHHHHHHHHHHhCCCCCCcccccCCCHHHHHhCCHHHHHHHcCCCCchHHHHHHHHHHhCCC
Confidence 7999999999999999999999999999999999 599999999999999999998899999999999999874
No 2
>cd08534 SAM_PNT-GABP-alpha Sterile alpha motif (SAM)/Pointed domain of GA-binding protein alpha chain. SAM Pointed domain of GABP-alpha subfamily of ETS transcriptional regulators is a putative protein-protein interaction domain. This type of transcriptional regulators forms heterotetramers containing two alpha and two beta subunits. It interacts with GA repeats (purine rich repeats). GABP transcriptional factors control gene expression in cell cycle control, apoptosis, and cellular respiration. GABP participates in regulation of transmembrane receptors and key hormones especially in myeloid cells and at the neuromuscular junction.
Probab=100.00 E-value=1.3e-38 Score=197.18 Aligned_cols=75 Identities=40% Similarity=0.897 Sum_probs=72.9
Q ss_pred CcCCCccccCHHHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHhcCCHHHHhhhCCCCChHHHHHHHHHHHHhccc
Q psy15116 2 YTLDDPRQWSESNVAQWLCWAIREFSLEGVTLHQFYMRGKDICSMGKESFLARAPPFMGDILWEHLEILQKEYLV 76 (78)
Q Consensus 2 ~vP~DP~~Ws~~~V~~Wl~W~~~ef~L~~~~~~~f~m~G~~LC~lt~edF~~~~p~~~GdiL~~hL~~lk~~~~~ 76 (78)
-||+||+.||++||.+||+|+++||+|+++++++|+|||++||.||+|||.+|+|.++|||||+||++||+++.|
T Consensus 14 ~IP~DP~~Wt~~~V~~WL~Wa~~ef~L~~v~~~~F~m~Gk~LC~Ls~edF~~r~p~~~GdiL~~hLe~Lrk~~~~ 88 (89)
T cd08534 14 KIPYDPMEWTEDQVLHWVVWAVKEFSLTDIDLSDWNITGRELCSLTQEEFFQRVPKDPGDIFWTHLELLRKCKFV 88 (89)
T ss_pred CCCCChHHcCHHHHHHHHHHHHHHcCCCCCChhhcCCCHHHHhcCCHHHHHHHcCCCccHHHHHHHHHHHHcccc
Confidence 589999999999999999999999999999999999999999999999999999977999999999999999987
No 3
>cd08533 SAM_PNT-ETS-1,2 Sterile alpha motif (SAM)/Pointed domain of ETS-1,2 family. SAM Pointed domain of ETS-1,2 family of transcriptional activators is a protein-protein interaction domain. It carries a kinase docking site and mediates interaction between ETS transcriptional activators and protein kinases. This group of transcriptional factors is involved in the Ras/MAP kinase signaling pathway. MAP kinases phosphorylate the transcription factors. Phosphorylated factors then recruit coactivators and enhance transactivation. Members of this group play a role in regulation of different embryonic developmental processes. ETS-1,2 transcriptional activators are proto-oncogenes involved in malignant transformation and tumor progression. They are potential molecular targets for selective cancer therapy.
Probab=100.00 E-value=1.5e-38 Score=189.86 Aligned_cols=71 Identities=63% Similarity=1.237 Sum_probs=69.0
Q ss_pred CCCccccCHHHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHhcCCHHHHhhhCCCCChHHHHHHHHHHHHhc
Q psy15116 4 LDDPRQWSESNVAQWLCWAIREFSLEGVTLHQFYMRGKDICSMGKESFLARAPPFMGDILWEHLEILQKEY 74 (78)
Q Consensus 4 P~DP~~Ws~~~V~~Wl~W~~~ef~L~~~~~~~f~m~G~~LC~lt~edF~~~~p~~~GdiL~~hL~~lk~~~ 74 (78)
|+||+.||++||.+||+|+++||+|+++++++|+|||++||+||+|||.+++|+++|||||+||++||+.+
T Consensus 1 P~DP~~Wt~~~V~~WL~Wa~~ef~L~~v~~~~F~m~Gk~LC~ls~edF~~~~p~~~GdIL~~hL~~L~k~~ 71 (71)
T cd08533 1 PKDPRLWTETHVRQWLLWAVNEFSLEGVNFQKFCMSGRDLCALGKERFLELAPDFVGDILWEHLEILQKEC 71 (71)
T ss_pred CcChhhCCHHHHHHHHHHHHHHcCCCCCCcccCCCCHHHHHcCCHHHHHHHcCCCcchHHHHHHHHHHhcC
Confidence 89999999999999999999999999999999999999999999999999999879999999999999864
No 4
>cd08531 SAM_PNT-ERG_FLI-1 Sterile alpha motif (SAM)/Pointed domain of ERG (Ets related gene) and FLI-1 (Friend leukemia integration 1) transcription factors. SAM Pointed domain of ERG/FLI-1 subfamily of ETS transcriptional regulators is a putative protein-protein interaction domain. The ERG and FLI regulators are involved in endothelial cell differentiation, bone morphogenesis and neural crest development. They are proto-oncogenes implicated in cancer development such as myeloid leukemia, Ewing's sarcoma and erythroleukemia. Members of this subfamily are potential targets for cancer therapy.
Probab=100.00 E-value=1.7e-38 Score=191.38 Aligned_cols=73 Identities=37% Similarity=0.806 Sum_probs=70.7
Q ss_pred cCCCccccCHHHHHHHHHHHHHhcCCCCCCCCCC-CCCHHHHhcCCHHHHhhhCCCCChHHHHHHHHHHHHhcc
Q psy15116 3 TLDDPRQWSESNVAQWLCWAIREFSLEGVTLHQF-YMRGKDICSMGKESFLARAPPFMGDILWEHLEILQKEYL 75 (78)
Q Consensus 3 vP~DP~~Ws~~~V~~Wl~W~~~ef~L~~~~~~~f-~m~G~~LC~lt~edF~~~~p~~~GdiL~~hL~~lk~~~~ 75 (78)
||+||+.||++||.+||+|+++||+|+++++++| +|||++||+||+|||.+++|+++|||||+||++||++.+
T Consensus 1 vP~DP~~Wt~~~V~~WL~Wa~~ef~L~~i~~~~F~~m~Gk~LC~lt~edF~~~~~~~~GdiL~~hL~~Lr~~~~ 74 (75)
T cd08531 1 VPADPTLWTREHVRQWLEWAVKEYGLQDVDVSRFQNIDGKELCKMTKEDFLRLTSAYNADVLLSHLSYLRESPL 74 (75)
T ss_pred CCCChhhcCHHHHHHHHHHHHHHcCCCCCChhhccCCChHHHHcCCHHHHHHHcCCCcchHHHHHHHHHHhCCC
Confidence 7999999999999999999999999999999999 999999999999999999998899999999999999864
No 5
>cd08542 SAM_PNT-ETS-1 Sterile alpha motif (SAM)/Pointed domain of ETS-1. SAM Pointed domain of ETS-1 subfamily of ETS transcriptional activators is a protein-protein interaction domain. The ETS-1 activator is regulated by phosphorylation. It contains a docking site for the ERK2 MAP (Mitogen Activated Protein) kinase, while the ERK2 phosphorylation site is located in the N-terminal disordered region upstream of the SAM Pointed domain. Mutations of the kinase docking site residues inhibit phosphorylation. ETS-1 activators play role in a number of different physiological processes, and they are expressed during embryonic development, including blood vessel formation, hematopoietic, lymphoid, neuronal and osteogenic differentiation. The Ets-1 gene is a proto-oncogene involved in progression of different tumors (including breast cancer, meningioma, and prostate cancer). Members of this subfamily are potential molecular targets for selective cancer therapy.
Probab=100.00 E-value=3.1e-38 Score=195.03 Aligned_cols=74 Identities=57% Similarity=1.122 Sum_probs=71.4
Q ss_pred CcCCCccccCHHHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHhcCCHHHHhhhCCCCChHHHHHHHHHHHHhcc
Q psy15116 2 YTLDDPRQWSESNVAQWLCWAIREFSLEGVTLHQFYMRGKDICSMGKESFLARAPPFMGDILWEHLEILQKEYL 75 (78)
Q Consensus 2 ~vP~DP~~Ws~~~V~~Wl~W~~~ef~L~~~~~~~f~m~G~~LC~lt~edF~~~~p~~~GdiL~~hL~~lk~~~~ 75 (78)
-||+||++||++||.+||+|+++||+|+++++++|+|||++||+||+|||++|+|+++|||||+||++||+.+.
T Consensus 14 ~Ip~DP~~Wt~~~V~~WL~Wa~~ef~L~~i~~~~F~m~Gk~LC~Ls~edF~~~~P~~~GdIL~~HL~~L~k~~~ 87 (88)
T cd08542 14 GIPKDPRQWTETHVRDWVMWAVNEFSLKGVDFQKFCMNGAALCALGKECFLELAPDFVGDILWEHLEILQKEDV 87 (88)
T ss_pred CCCCChhhCCHHHHHHHHHHHHHHcCCCCCCcccCCCCHHHHHcCCHHHHHhHcCCCccHHHHHHHHHHHHhcc
Confidence 48999999999999999999999999999999999999999999999999999998799999999999999764
No 6
>cd08532 SAM_PNT-PDEF-like Sterile alpha motif (SAM)/Pointed domain of prostate-derived ETS factor. SAM Pointed domain of PDEF-like (Prostate-Derived ETS Factor) subfamily of ETS transcriptional regulators is a putative protein-protein interaction domain. In human males this activator is highly expressed in the prostate gland and enhances androgen-mediated activation of the PSA promoter though interaction with the DNA binding domain of androgen receptor. PDEF may play a role in prostate cancer development as well as in goblet cell formation and mucus production in the epithelial lining of respiratory and intestinal tracts.
Probab=100.00 E-value=4.1e-37 Score=185.77 Aligned_cols=71 Identities=37% Similarity=0.708 Sum_probs=68.6
Q ss_pred CcCCCccccCHHHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHhcCCHHHHhhhCCCCChHHHHHHHHHHHHhc
Q psy15116 2 YTLDDPRQWSESNVAQWLCWAIREFSLEGVTLHQFYMRGKDICSMGKESFLARAPPFMGDILWEHLEILQKEY 74 (78)
Q Consensus 2 ~vP~DP~~Ws~~~V~~Wl~W~~~ef~L~~~~~~~f~m~G~~LC~lt~edF~~~~p~~~GdiL~~hL~~lk~~~ 74 (78)
-||+||+.||++||.+||+|+++||+|++ ++++|+|||++||.||+|||++|+|. +|||||+||++||+++
T Consensus 5 ~ip~DP~~Ws~~~V~~WL~w~~~ef~L~~-~~~~F~mnG~~LC~ls~edF~~r~p~-~GdiL~~hL~~lk~a~ 75 (76)
T cd08532 5 GISPDPYQWSPANVQKWLLWTEHQYRLPP-PPRCFELNGKDLCALSEEDFRRRAPQ-GGDTLHAQLDIWKSAA 75 (76)
T ss_pred CCCCChhhcCHHHHHHHHHHHHHHhCCCC-chhcCCCCHHHHHcCCHHHHHHHcCC-chhHHHHHHHHHHHhh
Confidence 48999999999999999999999999999 99999999999999999999999997 9999999999999874
No 7
>cd08543 SAM_PNT-ETS-2 Sterile alpha motif (SAM)/Pointed domain of ETS-2. SAM Pointed domain of ETS-2 subfamily of ETS transcriptional regulators is a protein-protein interaction domain. It contains a docking site for Cdk10 (cyclin-dependent kinase 10), a member of the Cdc2 kinase family. The interaction between ETS-2 and Cdk10 kinase inhibits ETS-2 transactivation activity in mammals. ETS-2 is also regulated by ERK2 MAP kinase. ETS-2, which is phosphorylated by ERK2, can interact with coactivators and enhance transactivation. ETS-2 transcriptional activators are involved in embryonic development and cell cycle control. The Ets-2 gene is a proto-oncogene. It is overexpressed in breast and prostate cancer cells and its overexpression is necessary for transformation of such cells. Members of ETS-2 subfamily are potential molecular targets for selective cancer therapy.
Probab=100.00 E-value=5.7e-37 Score=189.72 Aligned_cols=73 Identities=52% Similarity=0.988 Sum_probs=70.6
Q ss_pred CcCCCccccCHHHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHhcCCHHHHhhhCCCCChHHHHHHHHHHHHhc
Q psy15116 2 YTLDDPRQWSESNVAQWLCWAIREFSLEGVTLHQFYMRGKDICSMGKESFLARAPPFMGDILWEHLEILQKEY 74 (78)
Q Consensus 2 ~vP~DP~~Ws~~~V~~Wl~W~~~ef~L~~~~~~~f~m~G~~LC~lt~edF~~~~p~~~GdiL~~hL~~lk~~~ 74 (78)
-||+||+.||++||.+||+|+++||+|++++++.|.|||++||.||+|||++++|+++|||||+||+.|.+.+
T Consensus 14 ~Ip~DP~~Wt~~~V~~WL~Wa~~ef~L~~i~~~~F~m~Gk~LC~Ls~edF~~~ap~~~GdIL~~HL~~l~k~~ 86 (89)
T cd08543 14 GIPKNPWLWTEQQVCQWLLWATNEFSLVNVNFQQFGMNGQELCNLGKERFLELAPDFVGDILWEHLEQMIKEN 86 (89)
T ss_pred CCCCChhhCCHHHHHHHHHHHHHHcCCCCCCcccCCCChHHHHcCCHHHHHhHcCCCcchHHHHHHHHHHHHH
Confidence 4899999999999999999999999999999999999999999999999999999779999999999999865
No 8
>cd08541 SAM_PNT-FLI-1 Sterile alpha motif (SAM)/Pointed domain of friend leukemia integration 1 transcription activator. SAM Pointed domain of FLI-1 (Friend Leukemia Integration) subfamily of ETS transcriptional regulators is a putative protein-protein interaction domain. The FLI-1 protein participates in regulation of cellular differentiation, proliferation, and survival. The Fli-1 gene was initially described in Friend virus-induced erythroleukemias as a site for virus integration. It is highly expressed in hematopoietic tissues and at lower level in lungs, heart, and ovaries. Fli-1 is a proto-oncogene implicated in Ewing's sarcoma and erythroleukemia. Members of this subfamily are potential targets for cancer therapy.
Probab=100.00 E-value=5.2e-37 Score=190.58 Aligned_cols=74 Identities=35% Similarity=0.737 Sum_probs=71.4
Q ss_pred CCcCCCccccCHHHHHHHHHHHHHhcCCCCCCCCCC-CCCHHHHhcCCHHHHhhhCCCCChHHHHHHHHHHHHhc
Q psy15116 1 MYTLDDPRQWSESNVAQWLCWAIREFSLEGVTLHQF-YMRGKDICSMGKESFLARAPPFMGDILWEHLEILQKEY 74 (78)
Q Consensus 1 ~~vP~DP~~Ws~~~V~~Wl~W~~~ef~L~~~~~~~f-~m~G~~LC~lt~edF~~~~p~~~GdiL~~hL~~lk~~~ 74 (78)
+.||+||+.||++||++||+|+++||+|+++++++| .|||++||.||+|||.+++|.++|||||+||++||++.
T Consensus 11 l~IP~DP~~Wt~~hV~~WL~Wa~~ef~L~~vd~~~F~~m~Gk~LC~LskedF~~~~p~~~gdiLw~HL~~Lr~~~ 85 (91)
T cd08541 11 VIVPADPTLWTQEHVRQWLEWAIKEYGLMEIDTSFFQNMDGKELCKMNKEDFLRATSLYNTEVLLSHLSYLRESS 85 (91)
T ss_pred eeCCCChhhcCHHHHHHHHHHHHHHcCCCCCChhhccCCCHHHHHhCCHHHHHHHcCCCccHHHHHHHHHHHhCc
Confidence 469999999999999999999999999999999999 59999999999999999999889999999999999976
No 9
>cd08535 SAM_PNT-Tel_Yan Sterile alpha motif (SAM)/Pointed domain of Tel/Yan protein. SAM Pointed domain of Tel (Translocation, Ets, Leukemia)/Yan subfamily of ETS transcriptional repressors is a protein-protein interaction domain. SAM Pointed domains of this type of regulators can interact with each other, forming head-to-tail homodimers or homooligomers, and/or interact with SAM Pointed domains of another subfamily of ETS factors forming heterodimers. The oligomeric form is able to block transcription of target genesand is involved in MAPK signaling. They participate in regulation of different processes during embryo development including hematopoietic differentiation and eye development. Tel/Yan transcriptional factors are frequent targets of chromosomal translocations resulting in fusions of SAM domain with new neighboring genes. Such chimeric proteins were found in different tumors. Members of this subfamily are potential targets for cancer therapy.
Probab=100.00 E-value=9.3e-36 Score=176.56 Aligned_cols=67 Identities=46% Similarity=0.823 Sum_probs=65.1
Q ss_pred CCccccCHHHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHhcCCHHHHhhhCCCCChHHHHHHHHHHHH
Q psy15116 5 DDPRQWSESNVAQWLCWAIREFSLEGVTLHQFYMRGKDICSMGKESFLARAPPFMGDILWEHLEILQK 72 (78)
Q Consensus 5 ~DP~~Ws~~~V~~Wl~W~~~ef~L~~~~~~~f~m~G~~LC~lt~edF~~~~p~~~GdiL~~hL~~lk~ 72 (78)
.||+.||++||.+||+|+++||+|+++++++|+|||++||.||+|||.+|+|. +|||||+||++||+
T Consensus 1 ~DP~~Wt~~~V~~WL~wa~~ef~L~~i~~~~F~mnGk~LC~ls~edF~~r~p~-~GdiL~~hL~~L~~ 67 (68)
T cd08535 1 LQPRYWSRDDVLQWLRWAENEFSLPPIDSNTFEMNGKALCLLTKEDFRYRSPH-SGDVLYELLQHLLK 67 (68)
T ss_pred CChhhCCHHHHHHHHHHHHHhcCCCCCChhccCCCHHHHhcCCHHHHhhhCCC-chHHHHHHHHHHHh
Confidence 49999999999999999999999999999999999999999999999999994 99999999999997
No 10
>smart00251 SAM_PNT SAM / Pointed domain. A subfamily of the SAM domain
Probab=100.00 E-value=4.2e-35 Score=178.93 Aligned_cols=71 Identities=54% Similarity=1.058 Sum_probs=68.9
Q ss_pred CcCCCccccCHHHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHhcCCHHHHhhhCCCCChHHHHHHHHHHHHh
Q psy15116 2 YTLDDPRQWSESNVAQWLCWAIREFSLEGVTLHQFYMRGKDICSMGKESFLARAPPFMGDILWEHLEILQKE 73 (78)
Q Consensus 2 ~vP~DP~~Ws~~~V~~Wl~W~~~ef~L~~~~~~~f~m~G~~LC~lt~edF~~~~p~~~GdiL~~hL~~lk~~ 73 (78)
.||+||+.||++||.+||+|+++||+|+++++++|+|||++||.||++||++|+| .+||+||+||++||++
T Consensus 12 ~ip~dP~~Wt~~~V~~Wl~w~~~ef~L~~~~~~~f~m~G~~Lc~ls~edF~~~~p-~~GdiL~~hL~~Lk~~ 82 (82)
T smart00251 12 GIPADPQLWTEDHVLEWLEWAVKEFSLSPIDFSKFDMSGKELCSMSKEEFLERAP-FGGDILWSHLQILRKA 82 (82)
T ss_pred CCCCChhhCCHHHHHHHHHHHHHhcCCCCCCcccCCCCHHHHHcCCHHHHHHHcC-CchHHHHHHHHHHHhC
Confidence 5899999999999999999999999999999999999999999999999999999 6999999999999974
No 11
>cd08203 SAM_PNT Sterile alpha motif (SAM)/Pointed domain. Sterile alpha motif (SAM)/Pointed domain is found in about 40% of transcriptional regulators of ETS family (initially named for Erythroblastosis virus, E26-E Twenty Six). SAM Pointed domain containing proteins of this family additionally have C-terminal ETS DNA-binding domain. In a few cases, SAM Pointed domain appears as a single domain protein. Members of this group are mostly involved in regulation of embryonic development and growth control in eukaryotes. SAM Pointed domains mediate protein-protein interactions. Depending on the subgroup, they can interact with other SAM Pointed domains forming homo or hetero dimers/oligomers and/or they can recruit a protein kinase to its target which can be the SAM Pointed domain containing protein itself or another protein that has no kinase docking site. Thus, SAM Pointed domains participate in transcriptional regulation and signal transduction. Some genes coding ETS family transcripti
Probab=100.00 E-value=5.7e-34 Score=167.65 Aligned_cols=66 Identities=53% Similarity=1.077 Sum_probs=64.4
Q ss_pred CccccCHHHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHhcCCHHHHhhhCCCCChHHHHHHHHHHHH
Q psy15116 6 DPRQWSESNVAQWLCWAIREFSLEGVTLHQFYMRGKDICSMGKESFLARAPPFMGDILWEHLEILQK 72 (78)
Q Consensus 6 DP~~Ws~~~V~~Wl~W~~~ef~L~~~~~~~f~m~G~~LC~lt~edF~~~~p~~~GdiL~~hL~~lk~ 72 (78)
||..||++||.+||+|+++||+|+.+++++|+|||++||.||+|||.+|+|. +||+||+||++||+
T Consensus 1 dP~~Wt~~~V~~Wl~w~~~~f~L~~~~~~~F~m~G~~Lc~ls~edF~~~~p~-~GdiL~~hL~~l~~ 66 (66)
T cd08203 1 DPRLWTKEHVLQWLEWAVKEFSLPPIDFSKFNMNGKELCLLTKEDFLRRAPS-GGDILYEHLQLLRK 66 (66)
T ss_pred ChhhCCHHHHHHHHHHHHHhcCCCCCChhhcCCCHHHHHhCCHHHHHHHcCC-cHHHHHHHHHHHhC
Confidence 8999999999999999999999999999999999999999999999999997 99999999999985
No 12
>PF02198 SAM_PNT: Sterile alpha motif (SAM)/Pointed domain; InterPro: IPR003118 Transcription factors are protein molecules that bind to specific DNA sequences in the genome, resulting in the induction or inhibition of gene transcription []. The ets oncogene is such a factor, possessing a region of 85-90 amino acids known as the ETS (erythroblast transformation specific) domain [, ]. This domain is rich in positively-charged and aromatic residues, and binds to purine-rich segments of DNA. The ETS domain IPR000418 from INTERPRO has been identified in other transcription factors such as PU.1, human erg, human elf-1, human elk-1, GA binding protein, and a number of others [, , ]. It is generally localized at the C terminus of the protein, with the exception of ELF-1, ELK-1, ELK-3, ELK-4 and ERF where it is found at the N terminus. This entry describes the highly conserved PNT (or Pointed) domain which is found within a subset of the ETs domain (IPR000418 from INTERPRO ), including mammalian Ets-1, Ets-2, Erg, Fli-1, GABPalpha, and Tel, as well as Drosophila Pnt-P2 and Yan. The PNT domain (IPR001660 from INTERPRO ) through a common tertiary arrangement of four alpha-helices. A role in protein-protein association has been established for the PNT domain [, ].; GO: 0043565 sequence-specific DNA binding, 0005634 nucleus; PDB: 1SXE_A 1SXD_A 2KMD_A 2JV3_A 2E8P_A 1SV4_B 1SV0_B 1LKY_F 1JI7_B 2DKX_A ....
Probab=100.00 E-value=6.1e-34 Score=173.70 Aligned_cols=74 Identities=42% Similarity=0.915 Sum_probs=66.1
Q ss_pred CCcCCCccccCHHHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHhcCCHHHHhhhCCCCChHHHHHHHHHHHHhc
Q psy15116 1 MYTLDDPRQWSESNVAQWLCWAIREFSLEGVTLHQFYMRGKDICSMGKESFLARAPPFMGDILWEHLEILQKEY 74 (78)
Q Consensus 1 ~~vP~DP~~Ws~~~V~~Wl~W~~~ef~L~~~~~~~f~m~G~~LC~lt~edF~~~~p~~~GdiL~~hL~~lk~~~ 74 (78)
+.+|+||..||++||.+||+|++++|+|+++++++|+|||++||.||+++|.+++|..+|++||+||++||+++
T Consensus 11 ~~~p~DP~~Wt~~~V~~Wl~w~~~~f~l~~~~~~~f~~~G~~Lc~lt~e~F~~~~~~~~G~~Ly~~L~~Lk~~~ 84 (84)
T PF02198_consen 11 LWLPKDPRLWTKEDVLQWLRWVVREFDLPAIDFSRFNMNGRELCSLTKEDFRRRFPSGYGDILYSHLQLLKKCC 84 (84)
T ss_dssp TTSCSSGGG--HHHHHHHHHHHHHHTT-SSCHGGGGTS-HHHHHHSHHHHHHHHSTHTTHHHHHHHHHHHHHH-
T ss_pred hCCCCChhhCCHHHHHHHHHHHHHhcCCCcCchhccCCCHHHHHHcCHHHHHHHcCCCcHHHHHHHHHHHHHcc
Confidence 46899999999999999999999999999999999999999999999999999999559999999999999975
No 13
>cd08536 SAM_PNT-Mae Sterile alpha motif (SAM)/Pointed domain of Mae protein homolog. Mae (Modulator of the Activity of ETS) subfamily represents a group of SAM Pointed monodomain proteins. SAM Pointed domain is a protein-protein interaction domain. It can interact with other SAM pointed domains forming head-to-tail heterodimers and also provides a kinase docking site. For example, in Drosophila Mae is required for facilitating phosphorylation of the Yan factor and for blocking phosphorylation of the ETS-2 regulator. Mae interacts with the SAM Pointed domains of Yan and ETS-2. Binding enhances access of the kinase to the Yan phosphorylation site by providing a kinase docking site, or inhibits phosphorylation of ETS-2 by blocking its docking site. This type of factors participates in regulation of kinase signaling particularly during embryogenesis.
Probab=100.00 E-value=1.8e-33 Score=165.90 Aligned_cols=64 Identities=42% Similarity=0.847 Sum_probs=62.2
Q ss_pred CccccCHHHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHhcCCHHHHhhhCCCCChHHHHHHHHHH
Q psy15116 6 DPRQWSESNVAQWLCWAIREFSLEGVTLHQFYMRGKDICSMGKESFLARAPPFMGDILWEHLEIL 70 (78)
Q Consensus 6 DP~~Ws~~~V~~Wl~W~~~ef~L~~~~~~~f~m~G~~LC~lt~edF~~~~p~~~GdiL~~hL~~l 70 (78)
||+.||++||.+||.|+++||+|+++++++|+|||++||.||+|||++|+|. +|||||+||+..
T Consensus 1 DP~~Ws~~~V~~WL~w~~~ef~L~~~~~~~F~m~Gk~LC~ls~edF~~r~P~-~GdiL~~~lq~~ 64 (66)
T cd08536 1 DPRSWSREHVRTWLRWVSARYQLEVVDLDKFLMNGKGLCLMSLEGFLYRVPV-GGKLLYEDFQRR 64 (66)
T ss_pred CcccCCHHHHHHHHHHHHHHhCCCCCCccccCCCHHHHHcCCHHHHHhhcCC-ccHHHHHHHHHH
Confidence 8999999999999999999999999999999999999999999999999997 999999999863
No 14
>cd08538 SAM_PNT-ESE-2-like Sterile alpha motif (SAM)/Pointed domain of ESE-2 like ETS transcriptional regulators. SAM Pointed domain of ESE-2-like (Epithelium-Specific ETS) subfamily of ETS transcriptional regulators is a putative protein-protein interaction domain. It can act as a major transactivator by providing a potential docking site for co-activators. ESE-2 factors are involved in regulation of gene expression in a variety of epithelial (glandular and secretory) cells. ESE-2 mRNA was found in skin keratinocytes, salivary gland, mammary gland, stomach, prostate, and kidneys. The DNA binding consensus motif for ESE-2 consists of a GGA core and AT-rich flanks. The expression profiles of these factors are altered in epithelial cancers. Members of this subfamily are potential targets for cancer therapy.
Probab=99.98 E-value=1.2e-32 Score=166.85 Aligned_cols=71 Identities=25% Similarity=0.578 Sum_probs=66.9
Q ss_pred cCCCccccCHHHHHHHHHHHHHhcCCCC--CCCCCCCCCHHHHhcCCHHHHhhhCCCCChHHHHHHHHHHHHhc
Q psy15116 3 TLDDPRQWSESNVAQWLCWAIREFSLEG--VTLHQFYMRGKDICSMGKESFLARAPPFMGDILWEHLEILQKEY 74 (78)
Q Consensus 3 vP~DP~~Ws~~~V~~Wl~W~~~ef~L~~--~~~~~f~m~G~~LC~lt~edF~~~~p~~~GdiL~~hL~~lk~~~ 74 (78)
.-.||..||++||.+||.|+++||+|++ +++++|.|||++||+||+|||++++|+ +||+||++|+.+|.+.
T Consensus 3 ~~~dP~~Ws~~~V~~WL~Wav~ef~L~~~~i~~~~f~m~Gk~LC~ms~eeF~~~~p~-~GdvLy~~lq~~~~~~ 75 (78)
T cd08538 3 TSVHPEYWTKRHVWEWLQFCCDQYKLDANCISFCHFNISGLQLCSMTQEEFIEAAGI-CGEYLYFILQNIRTQG 75 (78)
T ss_pred CCCCccccCHHHHHHHHHHHHHHcCCCccccchhhcCCCHHHHHcCCHHHHHHHccc-chHHHHHHHHHHHhcC
Confidence 3579999999999999999999999977 789999999999999999999999996 9999999999999764
No 15
>cd08757 SAM_PNT_ESE Sterile alpha motif (SAM)/Pointed domain of ESE-like ETS transcriptional regulators. SAM Pointed domain of ESE-like (Epithelium-Specific ETS) subfamily of ETS transcriptional regulators is a putative protein-protein interaction domain. It can act as a major transactivator by providing a potential docking site for co-activators. ETS factors are important for cell differentiation. They can be involved in regulation of gene expression in different types of epithelial cells. They are expressed in salivary gland, intestine, stomach, pancreas, lungs, kidneys, colon, mammary gland, and prostate. Members of this group are proto-oncogenes. Expression profiles of these factors are altered in epithelial cancers, which makes them potential targets for cancer therapy.
Probab=99.98 E-value=2.1e-32 Score=161.95 Aligned_cols=65 Identities=28% Similarity=0.705 Sum_probs=61.9
Q ss_pred CccccCHHHHHHHHHHHHHhcCCCC--CCCCCCCCCHHHHhcCCHHHHhhhCCCCChHHHHHHHHHHH
Q psy15116 6 DPRQWSESNVAQWLCWAIREFSLEG--VTLHQFYMRGKDICSMGKESFLARAPPFMGDILWEHLEILQ 71 (78)
Q Consensus 6 DP~~Ws~~~V~~Wl~W~~~ef~L~~--~~~~~f~m~G~~LC~lt~edF~~~~p~~~GdiL~~hL~~lk 71 (78)
||+.||++||.+||+|+++||+|+. +++++|+|||++||.||+|||++|+|+ +||+||+||+.++
T Consensus 1 dP~~Wt~~~V~~Wl~w~~~e~~l~~~~i~~~~F~m~Gk~LC~ms~edF~~~~p~-~GdiL~~~l~~~~ 67 (68)
T cd08757 1 HPQYWTKNDVLEWLQFVAEQNKLDAECISFQKFNIDGQTLCSMTEEEFREAAGS-YGSLLYAELQRLT 67 (68)
T ss_pred CHhhCCHHHHHHHHHHHHHHcCCCCCcCCccccCCCHHHHHcCCHHHHHHHcCC-cHHHHHHHHHHHh
Confidence 8999999999999999999988875 788999999999999999999999997 9999999999986
No 16
>cd08537 SAM_PNT-ESE-1-like Sterile alpha motif (SAM)/Pointed domain of ESE-1 like ETS transcriptional regulators. SAM Pointed domain of ESE-1-like (Epithelium-Specific ETS) subfamily of ETS transcriptional regulators is a putative protein-protein interaction domain. SAM Pointed domain of ESE-1 provides a potential docking site for signaling kinase Pak1 in humans. ESE-1 factors are involved in regulation of gene expression in different types of epithelial cells. ESE-1 is expressed in many different organs including intestine, stomach, pancreas, lungs, kidneys, and prostate. The DNA binding consensus motif for ESE-1 consists of a purine-rich GGA[AT] core sequence. The expression profile of these factors is altered in epithelial cancers if compared to normal tissues. Members of this subfamily are potential targets for cancer therapy.
Probab=99.96 E-value=2e-30 Score=156.74 Aligned_cols=69 Identities=19% Similarity=0.563 Sum_probs=66.4
Q ss_pred CCCccccCHHHHHHHHHHHH--HhcCCCCCCCCCCCCCHHHHhcCCHHHHhhhCCCCChHHHHHHHHHHHHh
Q psy15116 4 LDDPRQWSESNVAQWLCWAI--REFSLEGVTLHQFYMRGKDICSMGKESFLARAPPFMGDILWEHLEILQKE 73 (78)
Q Consensus 4 P~DP~~Ws~~~V~~Wl~W~~--~ef~L~~~~~~~f~m~G~~LC~lt~edF~~~~p~~~GdiL~~hL~~lk~~ 73 (78)
-.||+.||+.||.+||.|+. +||++.++++++|.|||++||.|++|+|+.++|+ .||+||+||+.+|++
T Consensus 7 ~~~Pq~Wtk~qVleWL~~~~e~n~~dl~~v~f~~F~MnG~~LC~l~~e~F~~~a~p-~GdiLy~~L~~l~~~ 77 (78)
T cd08537 7 GEEPQFWTKTQVLEWISYHVEKNKYDASSIDFSRCDMDGATLCNCALDQMRLVFGP-LGDQLYAQLRELTSS 77 (78)
T ss_pred CCCcccccHHHHHHHHHHHHHhccCCcccCCHHHhCCchHHHHccCHHHHHHHcCC-hHHHHHHHHHHHhcc
Confidence 47999999999999999999 7899999999999999999999999999999998 999999999999975
No 17
>cd08539 SAM_PNT-ESE-3-like Sterile alpha motif (SAM)/Pointed domain of ESE-3 like ETS transcriptional regulators. SAM Pointed domain of ESE-3-like (Epithelium-Specific ETS) subfamily of ETS transcriptional regulators is a putative protein-protein interaction domain. It can act as a major transactivator by providing a potential docking site for co-activators. The ESE-3 transcriptional activator is involved in regulation of glandular epithelium differentiation through the MAP kinase signaling cascade. It is found to be expressed in glandular epithelium of prostate, pancreas, salivary gland, and trachea. Additionally, ESE-3 is differentially expressed during monocyte-derived dendritic cells development. DNA binding consensus motif for ESE-3 consists of purine-rich GGAA/T core sequence. The expression profiles of these factors are altered in epithelial cancers. Members of this subfamily are potential targets for cancer therapy.
Probab=99.96 E-value=4e-30 Score=154.37 Aligned_cols=69 Identities=23% Similarity=0.507 Sum_probs=64.0
Q ss_pred CCccccCHHHHHHHHHHH--HHhcCCCCCCCCCCCCCHHHHhcCCHHHHhhhCCCCChHHHHHHHHHHHHhc
Q psy15116 5 DDPRQWSESNVAQWLCWA--IREFSLEGVTLHQFYMRGKDICSMGKESFLARAPPFMGDILWEHLEILQKEY 74 (78)
Q Consensus 5 ~DP~~Ws~~~V~~Wl~W~--~~ef~L~~~~~~~f~m~G~~LC~lt~edF~~~~p~~~GdiL~~hL~~lk~~~ 74 (78)
.||+.||++||.+||.|+ ++++++.++++++|.|||++||.|++|+|+.++| ++||+||+||+.||.+.
T Consensus 3 ~~P~~Wtk~~V~~WL~~~~~~~~~~~~~i~~~~F~MnG~~LC~ms~e~F~~~~p-~~GdiLy~~l~~~~~~~ 73 (74)
T cd08539 3 IHPQYWTKYQVWEWLQHLLDTNQLDASCIPFQEFDINGEHLCSMSLQEFTRAAG-TAGQLLYSNLQHLKWNG 73 (74)
T ss_pred CChhhCCHHHHHHHHHHHHHHcCCCcccccHHHcCCChHHHHccCHHHHhhcCC-chHHHHHHHHHHHhcCC
Confidence 699999999999999999 7788888889999999999999999999998888 59999999999999764
No 18
>KOG3804|consensus
Probab=99.54 E-value=4.6e-15 Score=111.34 Aligned_cols=72 Identities=32% Similarity=0.641 Sum_probs=67.4
Q ss_pred CcCCCccccCHHHHHHHHHHHHHhcCCC--CCCCCCCCCCHHHHhcCCHHHHhhhCCCCChHHHHHHHHHHHHhc
Q psy15116 2 YTLDDPRQWSESNVAQWLCWAIREFSLE--GVTLHQFYMRGKDICSMGKESFLARAPPFMGDILWEHLEILQKEY 74 (78)
Q Consensus 2 ~vP~DP~~Ws~~~V~~Wl~W~~~ef~L~--~~~~~~f~m~G~~LC~lt~edF~~~~p~~~GdiL~~hL~~lk~~~ 74 (78)
.+..+|..|+++||.+|+.|+.++|+++ .++...|.|+|.+||.+|++||+.++|. .||+||++|+.+++..
T Consensus 57 ~l~~~p~~W~rd~v~~~l~~~~~~~sl~~~~~~~~~f~m~g~~L~~~te~d~~~r~~~-~gd~l~~~lq~~~~~~ 130 (390)
T KOG3804|consen 57 TLSVEPSLWSRDDVLEWLSFAEAEFSLPANCIAFPRFDINGNALCSSTEEDFRVRAGT-LGDVLYNSLQEKKEQS 130 (390)
T ss_pred ccccCcccccccchhHHHHHHHHhccCCcccccccccCCCcchhccccHHHhhhcCCC-ccchhhhhhhhhhccc
Confidence 4678999999999999999999999999 7888999999999999999999999996 9999999999998754
No 19
>KOG3805|consensus
Probab=97.82 E-value=3.7e-06 Score=62.35 Aligned_cols=69 Identities=19% Similarity=0.206 Sum_probs=61.2
Q ss_pred cCCCccccCHHHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHhcCC----HHHHhhhCCCCChHHHHHHHHHHHHh
Q psy15116 3 TLDDPRQWSESNVAQWLCWAIREFSLEGVTLHQFYMRGKDICSMG----KESFLARAPPFMGDILWEHLEILQKE 73 (78)
Q Consensus 3 vP~DP~~Ws~~~V~~Wl~W~~~ef~L~~~~~~~f~m~G~~LC~lt----~edF~~~~p~~~GdiL~~hL~~lk~~ 73 (78)
.+.||. |++.+|..|++|+.-|+-+++.-.+...+.+++.|.+. .+.|.++.| .+|++|.+++...+.+
T Consensus 152 s~~D~~-ws~~~v~~~~~~T~~Q~~~PP~~vq~~~~~~~E~~~~~~t~~hp~f~~~~~-y~G~vLpa~~~i~~ss 224 (361)
T KOG3805|consen 152 SFEDHY-WSPFEVQAQLSTTELQSYLPPQLVQLYRLYLAENNHRLDTPMHPVFGNRSP-YGGTVLPAELPIYKSS 224 (361)
T ss_pred cccccc-cCHHHHHHHHhhhhhhhcCCcHHHHHHHHHHHHhccccccccchhhccCCC-CCCcccccccccchhh
Confidence 467887 99999999999999999999876677789999999998 889999999 5999999999988843
No 20
>PF00536 SAM_1: SAM domain (Sterile alpha motif); InterPro: IPR021129 The sterile alpha motif (SAM) domain is a putative protein interaction module present in a wide variety of proteins [] involved in many biological processes. The SAM domain that spreads over around 70 residues is found in diverse eukaryotic organisms []. SAM domains have been shown to homo- and hetero-oligomerise, forming multiple self-association architectures and also binding to various non-SAM domain-containing proteins [], nevertheless with a low affinity constant []. SAM domains also appear to possess the ability to bind RNA []. Smaug, a protein that helps to establish a morphogen gradient in Drosophila embryos by repressing the translation of nanos (nos) mRNA, binds to the 3' untranslated region (UTR) of nos mRNA via two similar hairpin structures. The 3D crystal structure of the Smaug RNA-binding region shows a cluster of positively charged residues on the Smaug-SAM domain, which could be the RNA-binding surface. This electropositive potential is unique among all previously determined SAM-domain structures and is conserved among Smaug-SAM homologs. These results suggest that the SAM domain might have a primary role in RNA binding. Structural analyses show that the SAM domain is arranged in a small five-helix bundle with two large interfaces []. In the case of the SAM domain of EphB2, each of these interfaces is able to form dimers. The presence of these two distinct intermonomers binding surface suggest that SAM could form extended polymeric structures []. This entry represents type 1 SAM domains. ; PDB: 2KIV_A 3HIL_B 3KKA_A 3K1R_B 3SEN_B 3SEI_B 1V85_A 2KE7_A 2EAM_A 1WWV_A ....
Probab=97.21 E-value=0.00054 Score=38.60 Aligned_cols=60 Identities=23% Similarity=0.490 Sum_probs=40.1
Q ss_pred cccCHHHHHHHHHHHHHhcCCCCCC--CCCCCCCHHHHhcCCHHHHhhhCCCCChH--HHHHHHHHHH
Q psy15116 8 RQWSESNVAQWLCWAIREFSLEGVT--LHQFYMRGKDICSMGKESFLARAPPFMGD--ILWEHLEILQ 71 (78)
Q Consensus 8 ~~Ws~~~V~~Wl~W~~~ef~L~~~~--~~~f~m~G~~LC~lt~edF~~~~p~~~Gd--iL~~hL~~lk 71 (78)
..|+.++|.+||.= .+++... +..=.++|+.|+.||.+|+...--...|+ .+...++.||
T Consensus 1 s~W~~~~V~~WL~~----~~l~~y~~~F~~~~i~g~~L~~lt~~dL~~lgi~~~ghr~ki~~~i~~Lk 64 (64)
T PF00536_consen 1 SEWSVEDVSEWLKS----LGLEQYAENFEKNYIDGEDLLSLTEEDLEELGITKLGHRKKILRAIQKLK 64 (64)
T ss_dssp GGTSHHHHHHHHHH----TTGGGGHHHHHHTTSSHHHHTTSCHHHHHHTT-SSHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHH----CCCHHHHHHHHcCCchHHHHHhcCHHHHHHcCCCCHHHHHHHHHHHHHhC
Confidence 36999999999973 3443321 22226899999999999999854322363 4566666654
No 21
>PF07647 SAM_2: SAM domain (Sterile alpha motif); InterPro: IPR011510 The sterile alpha motif (SAM) domain is a putative protein interaction module present in a wide variety of proteins [] involved in many biological processes. The SAM domain that spreads over around 70 residues is found in diverse eukaryotic organisms []. SAM domains have been shown to homo- and hetero-oligomerise, forming multiple self-association architectures and also binding to various non-SAM domain-containing proteins [], nevertheless with a low affinity constant []. SAM domains also appear to possess the ability to bind RNA []. Smaug, a protein that helps to establish a morphogen gradient in Drosophila embryos by repressing the translation of nanos (nos) mRNA, binds to the 3' untranslated region (UTR) of nos mRNA via two similar hairpin structures. The 3D crystal structure of the Smaug RNA-binding region shows a cluster of positively charged residues on the Smaug-SAM domain, which could be the RNA-binding surface. This electropositive potential is unique among all previously determined SAM-domain structures and is conserved among Smaug-SAM homologs. These results suggest that the SAM domain might have a primary role in RNA binding. Structural analyses show that the SAM domain is arranged in a small five-helix bundle with two large interfaces []. In the case of the SAM domain of EphB2, each of these interfaces is able to form dimers. The presence of these two distinct intermonomers binding surface suggest that SAM could form extended polymeric structures []. This entry represents a second domain related to the SAM domain. ; GO: 0005515 protein binding; PDB: 1B0X_A 1X9X_B 1OW5_A 1V38_A 3BS7_A 3BS5_A 3TAD_A 3TAC_B 2K60_A 2DL0_A ....
Probab=96.99 E-value=0.00082 Score=37.99 Aligned_cols=61 Identities=23% Similarity=0.384 Sum_probs=40.4
Q ss_pred ccccCHHHHHHHHHHHHHhcCCCC--CCCCCCCCCH-HHHhcCCHHHHhhhCCCCChH--HHHHHHHHHH
Q psy15116 7 PRQWSESNVAQWLCWAIREFSLEG--VTLHQFYMRG-KDICSMGKESFLARAPPFMGD--ILWEHLEILQ 71 (78)
Q Consensus 7 P~~Ws~~~V~~Wl~W~~~ef~L~~--~~~~~f~m~G-~~LC~lt~edF~~~~p~~~Gd--iL~~hL~~lk 71 (78)
|..||.++|.+||.=. +++. -.+....++| ..|..||.+++...--...|+ .+...++.||
T Consensus 1 v~~w~~~~v~~WL~~~----gl~~y~~~f~~~~i~g~~~L~~l~~~~L~~lGI~~~~~r~kll~~i~~Lk 66 (66)
T PF07647_consen 1 VSTWSPEDVAEWLKSL----GLEQYADNFRENGIDGLEDLLQLTEEDLKELGITNLGHRRKLLSAIQELK 66 (66)
T ss_dssp GGGHCHHHHHHHHHHT----TCGGGHHHHHHTTCSHHHHHTTSCHHHHHHTTTTHHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHC----CcHHHHHHHHHcCCcHHHHHhhCCHHHHHHcCCCCHHHHHHHHHHHHHcC
Confidence 4689999999999822 4433 2245668999 999999999997443222332 3455554443
No 22
>cd00166 SAM Sterile alpha motif.; Widespread domain in signalling and nuclear proteins. In EPH-related tyrosine kinases, appears to mediate cell-cell initiated signal transduction via the binding of SH2-containing proteins to a conserved tyrosine that is phosphorylated. In many cases mediates homodimerization.
Probab=96.45 E-value=0.0042 Score=34.06 Aligned_cols=48 Identities=21% Similarity=0.381 Sum_probs=33.4
Q ss_pred ccCHHHHHHHHHHHHHhcCCCC--CCCCCCCCCHHHHhcCCHHHHhhhCCCCCh
Q psy15116 9 QWSESNVAQWLCWAIREFSLEG--VTLHQFYMRGKDICSMGKESFLARAPPFMG 60 (78)
Q Consensus 9 ~Ws~~~V~~Wl~W~~~ef~L~~--~~~~~f~m~G~~LC~lt~edF~~~~p~~~G 60 (78)
.||.++|.+||. +.+++. ..+....++|..|+.||.+++...--...|
T Consensus 1 ~w~~~~V~~wL~----~~~~~~y~~~f~~~~i~g~~L~~l~~~dL~~lgi~~~g 50 (63)
T cd00166 1 NWSPEDVAEWLE----SLGLGQYADNFRENGIDGDLLLLLTEEDLKELGITLPG 50 (63)
T ss_pred CCCHHHHHHHHH----HcChHHHHHHHHHcCCCHHHHhHCCHHHHHHcCCCCHH
Confidence 499999999996 233322 123344679999999999999855533235
No 23
>KOG4375|consensus
Probab=95.77 E-value=0.0041 Score=45.22 Aligned_cols=50 Identities=24% Similarity=0.454 Sum_probs=38.6
Q ss_pred cccCHHHHHHHHHHHH-HhcCCCCCCCCCCCCCHHHHhcCCHHHHhhhCCCCCh
Q psy15116 8 RQWSESNVAQWLCWAI-REFSLEGVTLHQFYMRGKDICSMGKESFLARAPPFMG 60 (78)
Q Consensus 8 ~~Ws~~~V~~Wl~W~~-~ef~L~~~~~~~f~m~G~~LC~lt~edF~~~~p~~~G 60 (78)
..||+.||..||.|.- .||. -.+..-+|||+-|=.++++||+.+-..+.|
T Consensus 208 ~~Wsk~DV~dWLssl~L~E~~---~aF~d~eIdG~hLp~l~k~df~~LGVTRVg 258 (272)
T KOG4375|consen 208 QRWSKIDVNDWLSSLHLIEYD---DAFHDIEIDGKHLPLLRKLDFRGLGVTRVG 258 (272)
T ss_pred ceeccccHHHHHHhhhhhhcc---hhhhhcccccchhhhcchhhhhcccchhhh
Confidence 5799999999999762 2332 123455899999999999999988876555
No 24
>smart00454 SAM Sterile alpha motif. Widespread domain in signalling and nuclear proteins. In EPH-related tyrosine kinases, appears to mediate cell-cell initiated signal transduction via the binding of SH2-containing proteins to a conserved tyrosine that is phosphorylated. In many cases mediates homodimerisation.
Probab=95.76 E-value=0.012 Score=32.45 Aligned_cols=61 Identities=21% Similarity=0.320 Sum_probs=37.8
Q ss_pred ccccCHHHHHHHHHHHHHhcCCCC--CCCCCCCCCHHHHhcCC-HHHHhhhCCCCCh--HHHHHHHHHHH
Q psy15116 7 PRQWSESNVAQWLCWAIREFSLEG--VTLHQFYMRGKDICSMG-KESFLARAPPFMG--DILWEHLEILQ 71 (78)
Q Consensus 7 P~~Ws~~~V~~Wl~W~~~ef~L~~--~~~~~f~m~G~~LC~lt-~edF~~~~p~~~G--diL~~hL~~lk 71 (78)
+..|+..+|.+||.-. +++. -.+..-.++|.+|+.++ .+++.+.--...| ..+...++.||
T Consensus 1 ~~~w~~~~v~~wL~~~----g~~~y~~~f~~~~i~g~~ll~~~~~~~l~~lgi~~~~~r~~ll~~i~~l~ 66 (68)
T smart00454 1 VSQWSPESVADWLESI----GLEQYADNFRKNGIDGALLLLLTSEEDLKELGITKLGHRKKILKAIQKLK 66 (68)
T ss_pred CCCCCHHHHHHHHHHC----ChHHHHHHHHHCCCCHHHHHhcChHHHHHHcCCCcHHHHHHHHHHHHHHH
Confidence 4689999999999732 2222 12334479999999999 6665554322234 44455555544
No 25
>PF13495 Phage_int_SAM_4: Phage integrase, N-terminal SAM-like domain; PDB: 2A3V_A.
Probab=69.86 E-value=4.6 Score=22.97 Aligned_cols=24 Identities=21% Similarity=0.398 Sum_probs=16.2
Q ss_pred CCccccCHHHHHHHHHHHHHhcCC
Q psy15116 5 DDPRQWSESNVAQWLCWAIREFSL 28 (78)
Q Consensus 5 ~DP~~Ws~~~V~~Wl~W~~~ef~L 28 (78)
.+|..+|.+||..|+.+..++-++
T Consensus 36 ~~~~~it~~~i~~y~~~l~~~~~~ 59 (85)
T PF13495_consen 36 KPPDEITPEDIEQYLNYLQNERGL 59 (85)
T ss_dssp --GGG--HHHHHHHHHHHHTTT--
T ss_pred CccchhHHHHHHHHHHHHHHhcCC
Confidence 688999999999999999865554
No 26
>cd00014 CH Calponin homology domain; actin-binding domain which may be present as a single copy or in tandem repeats (which increases binding affinity). The CH domain is found in cytoskeletal and signal transduction proteins, including actin-binding proteins like spectrin, alpha-actinin, dystrophin, utrophin, and fimbrin, proteins essential for regulation of cell shape (cortexillins), and signaling proteins (Vav).
Probab=67.92 E-value=1.7 Score=25.74 Aligned_cols=37 Identities=11% Similarity=0.289 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHhcCC-CCCCCCCCCCCHHHHhcCCH
Q psy15116 12 ESNVAQWLCWAIREFSL-EGVTLHQFYMRGKDICSMGK 48 (78)
Q Consensus 12 ~~~V~~Wl~W~~~ef~L-~~~~~~~f~m~G~~LC~lt~ 48 (78)
+..+.+|++...+++.. ...|+..--.||..||.+-.
T Consensus 3 ~~~l~~Win~~l~~~~~~~v~~~~~~l~dG~~L~~Ll~ 40 (107)
T cd00014 3 KEELLRWINKVLGEYGPVTINNFSTDLKDGIALCKLLN 40 (107)
T ss_pred HHHHHHHHHHHhccCCCccHHHHHHHHhchHHHHHHHH
Confidence 56788999888877775 22333444578999999844
No 27
>PF00307 CH: Calponin homology (CH) domain; InterPro: IPR001715 The calponin homology domain (also known as CH-domain) is a superfamily of actin-binding domains found in both cytoskeletal proteins and signal transduction proteins []. It comprises the following groups of actin-binding domains: Actinin-type (including spectrin, fimbrin, ABP-280) (see IPR001589 from INTERPRO). Calponin-type (see IPR000557 from INTERPRO). A comprehensive review of proteins containing this type of actin-binding domains is given in []. The CH domain is involved in actin binding in some members of the family. However in calponins there is evidence that the CH domain is not involved in its actin binding activity []. Most proteins have two copies of the CH domain, however some proteins such as calponin and the human vav proto-oncogene (P15498 from SWISSPROT) have only a single copy. The structure of an example CH-domain has recently been solved []. This entry represents the calponin-homology (CH) domain, a superfamily of actin-binding domains found in cytoskeletal proteins (contain two CH domain in tandem repeat), in regulatory proteins from muscle, and in signal transduction proteins. This domain has a core structure consisting of a 4-helical bundle. This domain is found in: Calponin, which is involved in the regulation of contractility and organisation of the actin cytoskeleton in smooth muscle cells []. Beta-spectrin, a major component of a submembrane cytoskeletal network connecting actin filaments to integral plasma membrane proteins []. The actin-cross-linking domain of the fimbrin/plastin family of actin filament bundling or cross-linking proteins []. Utrophin,a close homologue of dystrophin []. Dystrophin, the protein found to be defective in Duchenne muscular dystrophy; this protein contains a tandem repeat of two CH domains []. Actin-binding domain of plectin, a large and widely expressed cytolinker protein []. The N-terminal microtubule-binding domain of microtubule-associated protein eb1 (end-binding protein), a member of a conserved family of proteins that localise to the plus-ends of microtubules []. Ras GTPase-activating-like protein rng2, an IQGAP protein that is essential for the assembly of an actomyosin ring during cytokinesis []. Transgelin, which suppresses androgen receptor transactivation []. ; GO: 0005515 protein binding; PDB: 2DK9_A 1WYL_A 1WKU_B 1TJT_A 3FER_A 2WA7_A 2WA5_A 2WA6_A 2R0O_A 1PXY_A ....
Probab=67.20 E-value=7.5 Score=22.88 Aligned_cols=36 Identities=11% Similarity=0.324 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHhc--CCCCCCCCCCCCCHHHHhcCC
Q psy15116 12 ESNVAQWLCWAIREF--SLEGVTLHQFYMRGKDICSMG 47 (78)
Q Consensus 12 ~~~V~~Wl~W~~~ef--~L~~~~~~~f~m~G~~LC~lt 47 (78)
++.+.+|++-..... +..-.++...--||..||.|=
T Consensus 1 e~~ll~Win~~l~~~~~~~~v~~~~~~l~dG~~L~~Li 38 (108)
T PF00307_consen 1 EKELLKWINSHLEKYGKGRRVTNFSEDLRDGVVLCKLI 38 (108)
T ss_dssp HHHHHHHHHHHHTTSTTTSTCSSTSGGGTTSHHHHHHH
T ss_pred CHHHHHHHHHHcccccCCCCcCcHHHHhcCHHHHHHHH
Confidence 356788888777766 333344444457999999883
No 28
>KOG3678|consensus
Probab=65.83 E-value=3.1 Score=33.66 Aligned_cols=62 Identities=13% Similarity=0.240 Sum_probs=41.6
Q ss_pred cccCHHHHHHHHHHHH-HhcCCCCCCCCCCCCCHHHHhcCCHHHHhhhCCCCCh---HHHHHHHHHHHH
Q psy15116 8 RQWSESNVAQWLCWAI-REFSLEGVTLHQFYMRGKDICSMGKESFLARAPPFMG---DILWEHLEILQK 72 (78)
Q Consensus 8 ~~Ws~~~V~~Wl~W~~-~ef~L~~~~~~~f~m~G~~LC~lt~edF~~~~p~~~G---diL~~hL~~lk~ 72 (78)
.-|+..+|+.|+.=.- .+| --.+...-++|.-|..||.+|..+-.+--+| .-++..|+.||-
T Consensus 463 PgWt~AdVQ~WvkkIGFeeY---~EkFakQ~VDGDLLLqLTEndLk~DvGM~SGl~RKRFlRELqtLKv 528 (832)
T KOG3678|consen 463 PGWTCADVQYWVKKIGFEEY---VEKFAKQMVDGDLLLQLTENDLKHDVGMISGLHRKRFLRELQTLKV 528 (832)
T ss_pred CCcchHHHHHHHHHhCHHHH---HHHHHHHhccchHHHhhhhhhhhhhhhhhhhhhHHHHHHHHHHHHH
Confidence 4699999999997331 111 0112233578999999999999887754456 456666666664
No 29
>COG3208 GrsT Predicted thioesterase involved in non-ribosomal peptide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=63.44 E-value=4 Score=29.52 Aligned_cols=36 Identities=17% Similarity=0.349 Sum_probs=31.0
Q ss_pred CccccCHHHHHHHHHHHHHhcCCCCCCCCCCCCCHHH
Q psy15116 6 DPRQWSESNVAQWLCWAIREFSLEGVTLHQFYMRGKD 42 (78)
Q Consensus 6 DP~~Ws~~~V~~Wl~W~~~ef~L~~~~~~~f~m~G~~ 42 (78)
|+.. |.+++..|-+|+++.|.+.-.+-.+|-++.+.
T Consensus 187 D~~v-s~~~~~~W~~~t~~~f~l~~fdGgHFfl~~~~ 222 (244)
T COG3208 187 DHEV-SRDELGAWREHTKGDFTLRVFDGGHFFLNQQR 222 (244)
T ss_pred chhc-cHHHHHHHHHhhcCCceEEEecCcceehhhhH
Confidence 4444 88999999999999999999999999887764
No 30
>PF11516 DUF3220: Protein of unknown function (DUF3120); InterPro: IPR021597 This family of proteins with unknown function appears to be restricted to Bordetella. ; PDB: 2JPF_A.
Probab=62.81 E-value=5.1 Score=24.80 Aligned_cols=22 Identities=36% Similarity=0.531 Sum_probs=18.0
Q ss_pred CHHHHhhhCCCCChHHHHHHHHH
Q psy15116 47 GKESFLARAPPFMGDILWEHLEI 69 (78)
Q Consensus 47 t~edF~~~~p~~~GdiL~~hL~~ 69 (78)
..++|..|... +-|.||+||+-
T Consensus 47 rpdeftarlqq-stdalyshlea 68 (106)
T PF11516_consen 47 RPDEFTARLQQ-STDALYSHLEA 68 (106)
T ss_dssp -HHHHHHHHHT-TTHHHHHHHHH
T ss_pred ChHHHHHHHHH-hHHHHHHHHHH
Confidence 56889988875 89999999974
No 31
>smart00033 CH Calponin homology domain. Actin binding domains present in duplicate at the N-termini of spectrin-like proteins (including dystrophin, alpha-actinin). These domains cross-link actin filaments into bundles and networks. A calponin homology domain is predicted in yeasst Cdc24p.
Probab=62.48 E-value=2.7 Score=24.55 Aligned_cols=35 Identities=14% Similarity=0.375 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHhcC-CCCCCCCCCCCCHHHHhcC
Q psy15116 12 ESNVAQWLCWAIREFS-LEGVTLHQFYMRGKDICSM 46 (78)
Q Consensus 12 ~~~V~~Wl~W~~~ef~-L~~~~~~~f~m~G~~LC~l 46 (78)
+..+.+|++...+++. ..-.++..---||..||.+
T Consensus 2 ~~~l~~Win~~l~~~~~~~v~~~~~~l~dG~~L~~L 37 (103)
T smart00033 2 EKTLLRWVNSLLAEYGKPPVTNFSSDLSDGVALCKL 37 (103)
T ss_pred hHHHHHHHHHHcccCCCCcHHHHHHHHccHHHHHHH
Confidence 4677888887776653 3223333335789999998
No 32
>PF10281 Ish1: Putative stress-responsive nuclear envelope protein; InterPro: IPR018803 This group of proteins, found primarily in fungi, consists of putative stress-responsive nuclear envelope protein Ish1 and homologues [].
Probab=60.26 E-value=7.8 Score=19.70 Aligned_cols=12 Identities=42% Similarity=1.124 Sum_probs=11.0
Q ss_pred ccCHHHHHHHHH
Q psy15116 9 QWSESNVAQWLC 20 (78)
Q Consensus 9 ~Ws~~~V~~Wl~ 20 (78)
.||.++.+.||.
T Consensus 3 tWs~~~L~~wL~ 14 (38)
T PF10281_consen 3 TWSDSDLKSWLK 14 (38)
T ss_pred CCCHHHHHHHHH
Confidence 699999999996
No 33
>PRK06474 hypothetical protein; Provisional
Probab=58.21 E-value=16 Score=24.65 Aligned_cols=32 Identities=9% Similarity=0.135 Sum_probs=22.9
Q ss_pred CCHHHHhhhCCCCChHHHHHHHHHHHHhcccc
Q psy15116 46 MGKESFLARAPPFMGDILWEHLEILQKEYLVI 77 (78)
Q Consensus 46 lt~edF~~~~p~~~GdiL~~hL~~lk~~~~~~ 77 (78)
+|-.+.....+..+..++|.||..|.+.++|.
T Consensus 27 ~ta~el~~~l~~is~aTvYrhL~~L~e~GLI~ 58 (178)
T PRK06474 27 LTPLELVKILKDVPQATLYRHLQTMVDSGILH 58 (178)
T ss_pred CCHHHHHHHhcCCCHHHHHHHHHHHHHCCCEE
Confidence 34444444454447899999999999998873
No 34
>PF09235 Ste50p-SAM: Ste50p, sterile alpha motif; InterPro: IPR015316 The fungal Ste50p SAM domain consists of five helices, which form a compact, globular fold. It is required for mediation of homodimerisation and heterodimerisation (and in some cases oligomerisation) of the protein []. ; PDB: 1UQV_A 1Z1V_A.
Probab=57.97 E-value=3.1 Score=25.05 Aligned_cols=49 Identities=18% Similarity=0.338 Sum_probs=33.1
Q ss_pred CccccCHHHHHHHHHHHHHhcCCCCCCC--CCC---CCCHHHHhcCCHHHHhhhCCC
Q psy15116 6 DPRQWSESNVAQWLCWAIREFSLEGVTL--HQF---YMRGKDICSMGKESFLARAPP 57 (78)
Q Consensus 6 DP~~Ws~~~V~~Wl~W~~~ef~L~~~~~--~~f---~m~G~~LC~lt~edF~~~~p~ 57 (78)
|-..||.++|..| +..+-++++-|. .++ .|+|.-|-.||.+|=.+.++.
T Consensus 2 ~~~~Wsv~eVv~W---C~~~L~l~~~d~l~~~l~en~I~Gd~L~eLtl~DCKeLc~~ 55 (75)
T PF09235_consen 2 DFSNWSVDEVVSW---CISSLELDDEDPLCNNLRENDITGDVLPELTLEDCKELCDN 55 (75)
T ss_dssp -TTT--HHHHHHH---HHHHHSS-TTSCHHHHHHHTT--CCCHHHHHHHHHHHCTTS
T ss_pred ccccccHHHHHHH---HHHhcCCCCCCHHHHHHHHccCccchhhhccHHHHHHHcCc
Confidence 4568999999765 577778866442 233 699999999999999999984
No 35
>PF09447 Cnl2_NKP2: Cnl2/NKP2 family protein; InterPro: IPR018565 This entry includes the Cnl2 kinetochore protein [].
Probab=53.44 E-value=14 Score=21.60 Aligned_cols=29 Identities=17% Similarity=0.216 Sum_probs=22.7
Q ss_pred CCHHHHhhhCCCC--Ch---HHHHHHHHHHHHhc
Q psy15116 46 MGKESFLARAPPF--MG---DILWEHLEILQKEY 74 (78)
Q Consensus 46 lt~edF~~~~p~~--~G---diL~~hL~~lk~~~ 74 (78)
+|.+.|....|.. +. ..||.+|+..|...
T Consensus 20 isl~qF~~LFPr~~~~~P~ir~LYr~Lq~qR~~~ 53 (67)
T PF09447_consen 20 ISLEQFRKLFPRRLRSHPQIRSLYRDLQAQREQV 53 (67)
T ss_pred cCHHHHHHHccccCCCChHHHHHHHHHHHHHHHH
Confidence 5889999999863 22 68999999988743
No 36
>PF15142 INCA1: INCA1
Probab=51.79 E-value=7.2 Score=26.59 Aligned_cols=16 Identities=44% Similarity=0.827 Sum_probs=13.0
Q ss_pred hCCCCChHHHHHHHHH
Q psy15116 54 RAPPFMGDILWEHLEI 69 (78)
Q Consensus 54 ~~p~~~GdiL~~hL~~ 69 (78)
..|..+||++|++|..
T Consensus 24 lmpq~Ygd~FWenLsq 39 (178)
T PF15142_consen 24 LMPQRYGDIFWENLSQ 39 (178)
T ss_pred CCcchhhhHHHHhhcc
Confidence 4566799999999864
No 37
>PF02184 HAT: HAT (Half-A-TPR) repeat; InterPro: IPR003107 The HAT (Half A TPR) repeat has a repetitive pattern characterised by three aromatic residues with a conserved spacing. They are structurally and sequentially similar to TPRs (tetratricopeptide repeats), though they lack the highly conserved alanine and glycine residues found in TPRs. The number of HAT repeats found in different proteins varies between 9 and 12. HAT-repeat-containing proteins appear to be components of macromolecular complexes that are required for RNA processing []. The repeats may be involved in protein-protein interactions. The HAT motif has striking structural similarities to HEAT repeats (IPR000357 from INTERPRO), being of a similar length and consisting of two short helices connected by a loop domain, as in HEAT repeats.; GO: 0006396 RNA processing, 0005622 intracellular
Probab=48.01 E-value=8.3 Score=19.55 Aligned_cols=11 Identities=27% Similarity=0.607 Sum_probs=8.9
Q ss_pred HHHHHHHHHHH
Q psy15116 14 NVAQWLCWAIR 24 (78)
Q Consensus 14 ~V~~Wl~W~~~ 24 (78)
+|..|+.|+.=
T Consensus 19 ~~k~WikyAkF 29 (32)
T PF02184_consen 19 EVKNWIKYAKF 29 (32)
T ss_pred CchHHHHHHHh
Confidence 68899999863
No 38
>PF12621 DUF3779: Phosphate metabolism protein ; InterPro: IPR022257 This domain family is found in eukaryotes, and is approximately 100 amino acids in length. The family is found in association with PF02714 from PFAM. There are two completely conserved residues (W and D) that may be functionally important. This family is likely to be involved in phosphate metabolism however there is little accompanying literature to confirm this.
Probab=46.94 E-value=11 Score=22.96 Aligned_cols=36 Identities=17% Similarity=0.246 Sum_probs=23.5
Q ss_pred CCcCCCccccCHHHHHHHHHHHHHhcCCCCCCC-CCCCCCHH
Q psy15116 1 MYTLDDPRQWSESNVAQWLCWAIREFSLEGVTL-HQFYMRGK 41 (78)
Q Consensus 1 ~~vP~DP~~Ws~~~V~~Wl~W~~~ef~L~~~~~-~~f~m~G~ 41 (78)
|+||+||.--|+.+|.+ .++..+...|. ..+..+|+
T Consensus 48 lWIP~D~~GvS~~ei~~-----~~~~~v~~Sd~gA~ldekgk 84 (95)
T PF12621_consen 48 LWIPRDPLGVSRQEIEE-----TRKVGVPISDEGATLDEKGK 84 (95)
T ss_pred EEeecCCCCCCHHHHHH-----hhcCCeEEECCCeEEccCCC
Confidence 57999999999999987 34444443332 24455554
No 39
>PF01638 HxlR: HxlR-like helix-turn-helix; InterPro: IPR002577 The hxlR-type HTH domain is a domain of ~90-100 amino acids present in putative transcription regulators with a winged helix-turn-helix (wHTH) structure. The domain is named after Bacillus subtilis hxlR, a transcription activator of the hxlAB operon involved in the detoxification of formaldehyde []. The hxlR-type domain forms the core of putative transcription regulators and of hypothetical proteins occurring in eubacteria as well as in archaea. The sequence and structure of hxlR-type proteins show similarities with the marR-type wHTH []. The crystal structure of ytfH resembles the DNA-binding domains of winged helix proteins, containing a three helix (H) bundle and a three-stranded antiparallel beta-sheet (B) in the topology: H1-H2-B1-H3-H4-B2-B3-H5-H6. This topology corresponds with that of the marR-type DNA-binding domain, wherein helices 3 and 4 comprise the helix-turn-helix motif and the beta-sheet is called the wing. ; PDB: 2F2E_B 3DF8_A 1Z7U_B 1YYV_A 4A5M_D 4A5N_B 2FSW_A 2HZT_D.
Probab=46.30 E-value=37 Score=20.00 Aligned_cols=30 Identities=23% Similarity=0.255 Sum_probs=25.1
Q ss_pred CHHHHhhhCCCCChHHHHHHHHHHHHhccc
Q psy15116 47 GKESFLARAPPFMGDILWEHLEILQKEYLV 76 (78)
Q Consensus 47 t~edF~~~~p~~~GdiL~~hL~~lk~~~~~ 76 (78)
.-.||.++.|..+-.+|...|..|...++|
T Consensus 20 rf~el~~~l~~is~~~L~~~L~~L~~~GLv 49 (90)
T PF01638_consen 20 RFSELQRRLPGISPKVLSQRLKELEEAGLV 49 (90)
T ss_dssp EHHHHHHHSTTS-HHHHHHHHHHHHHTTSE
T ss_pred cHHHHHHhcchhHHHHHHHHHHHHHHcchh
Confidence 446788999877899999999999999887
No 40
>PF12840 HTH_20: Helix-turn-helix domain; PDB: 1ULY_A 2CWE_A 1Y0U_B 2QUF_B 2QLZ_C 2OQG_B 2ZKZ_C 3PQK_A 3PQJ_D 3F6O_B ....
Probab=46.19 E-value=25 Score=19.17 Aligned_cols=18 Identities=22% Similarity=0.231 Sum_probs=15.3
Q ss_pred ChHHHHHHHHHHHHhccc
Q psy15116 59 MGDILWEHLEILQKEYLV 76 (78)
Q Consensus 59 ~GdiL~~hL~~lk~~~~~ 76 (78)
.-..++.||..|++.++|
T Consensus 37 ~~~t~s~hL~~L~~aGli 54 (61)
T PF12840_consen 37 SQSTVSYHLKKLEEAGLI 54 (61)
T ss_dssp -HHHHHHHHHHHHHTTSE
T ss_pred CHHHHHHHHHHHHHCCCe
Confidence 567899999999999886
No 41
>PF14436 EndoU_bacteria: Bacterial EndoU nuclease
Probab=44.20 E-value=26 Score=22.01 Aligned_cols=23 Identities=17% Similarity=0.280 Sum_probs=19.0
Q ss_pred CccccCHHHHHHHHHHHHHhcCC
Q psy15116 6 DPRQWSESNVAQWLCWAIREFSL 28 (78)
Q Consensus 6 DP~~Ws~~~V~~Wl~W~~~ef~L 28 (78)
+|..||.++|...++-+.+.-..
T Consensus 70 FP~~ws~~~I~~~i~~a~~n~~~ 92 (128)
T PF14436_consen 70 FPKNWSDEKILDEIQEAYKNKYS 92 (128)
T ss_pred CCccCCHHHHHHHHHHHHhCCCc
Confidence 68999999999999987665444
No 42
>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]
Probab=41.85 E-value=15 Score=28.12 Aligned_cols=66 Identities=21% Similarity=0.161 Sum_probs=46.0
Q ss_pred cCCCccccCHHHHHHHHHHHHH---hcCCCCCCCCCCCCCHHHHhcCCHHHHhhhCCCCChHHHHHHHHHHHHhcccc
Q psy15116 3 TLDDPRQWSESNVAQWLCWAIR---EFSLEGVTLHQFYMRGKDICSMGKESFLARAPPFMGDILWEHLEILQKEYLVI 77 (78)
Q Consensus 3 vP~DP~~Ws~~~V~~Wl~W~~~---ef~L~~~~~~~f~m~G~~LC~lt~edF~~~~p~~~GdiL~~hL~~lk~~~~~~ 77 (78)
++.++..|-..||.+||+-..+ +|++=-+|+-.|.-+-+++-...+ .+.+++..-+++|+...+++
T Consensus 265 ~~~~~~~~i~~Dvf~~l~~~~~~g~~fDlIilDPPsF~r~k~~~~~~~r---------dy~~l~~~~~~iL~pgG~l~ 333 (393)
T COG1092 265 LDGDRHRFIVGDVFKWLRKAERRGEKFDLIILDPPSFARSKKQEFSAQR---------DYKDLNDLALRLLAPGGTLV 333 (393)
T ss_pred CCccceeeehhhHHHHHHHHHhcCCcccEEEECCcccccCcccchhHHH---------HHHHHHHHHHHHcCCCCEEE
Confidence 3567788999999999999988 999977888777655555422111 25666666677776655443
No 43
>PF01022 HTH_5: Bacterial regulatory protein, arsR family; InterPro: IPR001845 Bacterial transcription regulatory proteins that bind DNA via a helix-turn-helix (HTH) motif can be grouped into families on the basis of sequence similarities. One such group, termed arsR, includes several proteins that appear to dissociate from DNA in the presence of metal ions: arsR, which functions as a transcriptional repressor of an arsenic resistance operon; smtB from Synechococcus sp. (strain PCC 7942), which acts as a transcriptional repressor of the smtA gene that codes for a metallothionein; cadC, a protein required for cadmium-resistance; and hypothetical protein yqcJ from Bacillus subtilis. The HTH motif is thought to be located in the central part of these proteins []. The motif is characterised by a number of well-conserved residues: at its N-terminal extremity is a cysteine residue; a second Cys is found in arsR and cadC, but not in smtA; and at the C terminus lie one or two histidines. These residues may be involved in metal-binding (Zn in smtB; metal-oxyanions such as arsenite, antimonite and arsenate for arsR; and cadmium for cadC) []. It is believed that binding of a metal ion could induce a conformational change that would prevent the protein from binding DNA []. The crystal structure of the cyanobacterial smtB shows a fold of five alpha-helices (H) and a pair of antiparallel beta-strands (B) in the topology H1-H2-H3-H4-B1-B2-H5. Helices 3 and 4 comprise the helix-turn-helix motif and the beta-sheet is called the wing as in other wHTH, such as the dtxR-type or the merR-type. Helix 4 is termed the recognition helix, like in other HTHs where it binds the DNA major groove. Most arsR/smtB-like metalloregulators form homodimers []. The dimer interface is formed by helix 5 and an N-terminal part []. Two distinct metal-binding sites have been identified. The first site comprises cysteine thiolates located in the HTH in helix 3 and for some cases in the N terminus, called the alpha3(N) site []. The second metal-binding site is located in helix 5 (and C terminus) and is called the alpha5(C) site. The alpha3N site binds large thiophilic, toxic metals including Cd, Pb, and Bi, as in S. aureus cadC. ArsR lacks the N-terminal arm and its alpha3 site coordinates smaller thiophilic ions like As and Sb. The alpha5 site contains carboxylate and imidazole ligands and interacts preferentially with biologically required metal ions including Zn, Co, and Ni. ArsR-type metalloregulators contain one of these sites, both, or other potential metal-binding sites [, ]. Binding of metal ions to these sites leads to allosteric changes that can derepress the operator/promotor DNA. The metal-inducible operons contain one or two imperfect 12-2-12 inverted repeats, which can be recognised by multimeric arsR-type metalloregulators. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 3CUO_A 1U2W_C 3F72_C 3F6V_A 3JTH_B 2P4W_B 1KU9_B 2LKP_B 1SMT_A 1R22_B ....
Probab=39.35 E-value=34 Score=17.75 Aligned_cols=27 Identities=19% Similarity=0.169 Sum_probs=18.9
Q ss_pred HHhhhCCCCChHHHHHHHHHHHHhcccc
Q psy15116 50 SFLARAPPFMGDILWEHLEILQKEYLVI 77 (78)
Q Consensus 50 dF~~~~p~~~GdiL~~hL~~lk~~~~~~ 77 (78)
+..+... .+=.....||..|++.++|.
T Consensus 20 el~~~l~-~s~~~vs~hL~~L~~~glV~ 46 (47)
T PF01022_consen 20 ELAEELG-LSQSTVSHHLKKLREAGLVE 46 (47)
T ss_dssp HHHHHHT-S-HHHHHHHHHHHHHTTSEE
T ss_pred hHHHhcc-ccchHHHHHHHHHHHCcCee
Confidence 3333444 25678999999999999873
No 44
>PF08133 Nuclease_act: Anticodon nuclease activator family; InterPro: IPR012585 This family consists of the anticodon nuclease activator proteins. Pre-existing host tRNAs are reprocessed during Bacteriophage T4 infection of certain Escherichia coli strains. In this pathway, tRNA(Lys) is cleaved 5, by the anticodon nuclease to the wobble base and is later restored in polynucleotide kinase and RNA ligase reactions [].; GO: 0004518 nuclease activity, 0050792 regulation of viral reproduction
Probab=30.00 E-value=51 Score=15.77 Aligned_cols=20 Identities=10% Similarity=0.242 Sum_probs=14.4
Q ss_pred cccCHHHHHHHHHHHHHhcC
Q psy15116 8 RQWSESNVAQWLCWAIREFS 27 (78)
Q Consensus 8 ~~Ws~~~V~~Wl~W~~~ef~ 27 (78)
..|-.+||.||-+.-.+.+.
T Consensus 2 sn~hnehvmqfyr~nlk~~g 21 (26)
T PF08133_consen 2 SNFHNEHVMQFYRHNLKTKG 21 (26)
T ss_pred cchhHHHHHHHHHhhccccc
Confidence 35788999999886555443
No 45
>KOG1899|consensus
Probab=29.48 E-value=16 Score=30.29 Aligned_cols=44 Identities=16% Similarity=0.495 Sum_probs=33.3
Q ss_pred cccCHHHHHHHHHHHHHhcCCCC-CC-CCCCCCCHHHHhcCCHHHHhhhC
Q psy15116 8 RQWSESNVAQWLCWAIREFSLEG-VT-LHQFYMRGKDICSMGKESFLARA 55 (78)
Q Consensus 8 ~~Ws~~~V~~Wl~W~~~ef~L~~-~~-~~~f~m~G~~LC~lt~edF~~~~ 55 (78)
..|+.++|..||. ++.|.. ++ ..++--+|+.+..+|..|+..-.
T Consensus 548 a~W~~EqvcnWla----e~Gl~qY~n~~r~wv~Sg~tfltaS~qd~EkeL 593 (861)
T KOG1899|consen 548 ADWRSEQVCNWLA----EIGLGQYMNEVRRWVRSGRTFLTASPQDYEKEL 593 (861)
T ss_pred hhccHHHHHHHHH----HhchHHHHHHHHHHHhcCchhhcCCHHHHHHHh
Confidence 4699999999995 556654 22 24667889999999999987544
No 46
>COG3143 CheZ Chemotaxis protein [Cell motility and secretion / Signal transduction mechanisms]
Probab=29.37 E-value=56 Score=23.17 Aligned_cols=47 Identities=23% Similarity=0.432 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHhcCCHHHHhhhCCCCChHHHHHHHHH
Q psy15116 13 SNVAQWLCWAIREFSLEGVTLHQFYMRGKDICSMGKESFLARAPPFMGDILWEHLEI 69 (78)
Q Consensus 13 ~~V~~Wl~W~~~ef~L~~~~~~~f~m~G~~LC~lt~edF~~~~p~~~GdiL~~hL~~ 69 (78)
+=+.+|=.|..++-++.+ -++||.-+ ++|++.+|...+++=..-+++
T Consensus 92 ~l~~rWq~wm~~~i~~~~---------~r~Lv~~t-~~fL~~vp~~t~~tn~qL~eI 138 (217)
T COG3143 92 ALTQRWQDWMARPIDLDD---------ARELVTDT-RQFLADVPQHTSFTNAQLLEI 138 (217)
T ss_pred HHHHHHHHHHcCccchHH---------HHHHHHHH-HHHHHhcccchhhHHHHHHHH
Confidence 446789999988877754 37888765 479999997666544333333
No 47
>PF11393 IcmL: Macrophage killing protein with similarity to conjugation protein; InterPro: IPR021055 IcmL contains two amphipathic beta-sheet regions, required for the pore-forming ability which may be related to the transfer of this protein into a host cell membrane []. The icmL gene shows significant similarity to plasmid genes involved in conjugation however IcmL is thought to be required for macrophage killing. It is unknown whether conjugation plays a role in macrophage killing [].
Probab=29.21 E-value=96 Score=19.16 Aligned_cols=50 Identities=22% Similarity=0.280 Sum_probs=33.8
Q ss_pred CcCCCccccCHHHHHHHHH-HHHHhcCCCCCCCCCCCCCHHHHhcCCHHHHhh
Q psy15116 2 YTLDDPRQWSESNVAQWLC-WAIREFSLEGVTLHQFYMRGKDICSMGKESFLA 53 (78)
Q Consensus 2 ~vP~DP~~Ws~~~V~~Wl~-W~~~ef~L~~~~~~~f~m~G~~LC~lt~edF~~ 53 (78)
++|.|=..+|..+|.+|.. .+.+-|+++=.+... .++-..=| +|.+.|..
T Consensus 7 l~pl~~P~~s~~~v~~wa~~ai~~~fs~Df~~y~~-ql~~~~~~-fT~~g~~~ 57 (108)
T PF11393_consen 7 LVPLDEPAVSDAEVLQWAQEAITAAFSYDFVNYRQ-QLNDARKC-FTDEGWNS 57 (108)
T ss_pred cCCCCCcccCHHHHHHHHHHHHHHHhCcCHHhHHH-HHHHHHHh-cCHHHHHH
Confidence 5788888899999999999 556888885443221 34444444 67766553
No 48
>COG4672 gp18 Phage-related protein [Function unknown]
Probab=28.77 E-value=8.9 Score=27.44 Aligned_cols=24 Identities=29% Similarity=0.440 Sum_probs=20.8
Q ss_pred HHHHHhcCCCCCCCCCCCCCHHHH
Q psy15116 20 CWAIREFSLEGVTLHQFYMRGKDI 43 (78)
Q Consensus 20 ~W~~~ef~L~~~~~~~f~m~G~~L 43 (78)
.|--++|+--+++-+.|.|||+.-
T Consensus 49 ~WQG~~Y~a~Pi~~~GFe~~GkG~ 72 (231)
T COG4672 49 TWQGREYQAYPIDGSGFEMNGKGS 72 (231)
T ss_pred eeeccccccccccccceeecCCCC
Confidence 466789999999999999999864
No 49
>KOG0249|consensus
Probab=27.67 E-value=36 Score=28.74 Aligned_cols=24 Identities=25% Similarity=0.630 Sum_probs=18.5
Q ss_pred CCCccccCHHHHHHHHHHH-HHhcC
Q psy15116 4 LDDPRQWSESNVAQWLCWA-IREFS 27 (78)
Q Consensus 4 P~DP~~Ws~~~V~~Wl~W~-~~ef~ 27 (78)
-+||..||.+.|..|++=. -++|.
T Consensus 755 i~DvlVWsN~RvirWV~~igL~eya 779 (916)
T KOG0249|consen 755 ITDVLVWSNDRVIRWVQSIGLGEYA 779 (916)
T ss_pred cccceEeecHHHHHHHHhcCHHHHh
Confidence 4799999999999999743 34443
No 50
>PF05930 Phage_AlpA: Prophage CP4-57 regulatory protein (AlpA); InterPro: IPR010260 This entry is represents phage P4, Orf88. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. In Escherichia coli phage P4 Orf 88 is similar to AlpA of the CP4-57 cryptic prophage []. AlpA acts as a positive transcriptional regulator of slpA, a gene linked to alpA and necessary for suppression of lon mutants [, ]. The sequence of slpA suggests that it encodes an integrase gene closely related to phage P4 int and that both alpA and slpA are part of a cryptic P4-like prophage. Increase in alpA expression increases SlpA synthesis. Increased SlpA leads, in turn, to the excision and loss of the cryptic prophage. ; PDB: 1Z4H_A.
Probab=27.57 E-value=20 Score=19.09 Aligned_cols=12 Identities=42% Similarity=1.121 Sum_probs=0.0
Q ss_pred cccCHHHHHHHH
Q psy15116 8 RQWSESNVAQWL 19 (78)
Q Consensus 8 ~~Ws~~~V~~Wl 19 (78)
.-|..++|.+||
T Consensus 40 ~~W~~~eV~~Wi 51 (51)
T PF05930_consen 40 VRWRESEVEAWI 51 (51)
T ss_dssp ------------
T ss_pred cccccccccccC
Confidence 359999999996
No 51
>PHA00738 putative HTH transcription regulator
Probab=27.26 E-value=1.1e+02 Score=19.60 Aligned_cols=27 Identities=15% Similarity=0.113 Sum_probs=20.4
Q ss_pred HHhhhCCCCChHHHHHHHHHHHHhcccc
Q psy15116 50 SFLARAPPFMGDILWEHLEILQKEYLVI 77 (78)
Q Consensus 50 dF~~~~p~~~GdiL~~hL~~lk~~~~~~ 77 (78)
+.....+ .+-..+..||..|+.+++|.
T Consensus 31 eLae~l~-lSQptVS~HLKvLreAGLV~ 57 (108)
T PHA00738 31 LISHTLL-LSYTTVLRHLKILNEQGYIE 57 (108)
T ss_pred HHHHhhC-CCHHHHHHHHHHHHHCCceE
Confidence 4444445 36788999999999999874
No 52
>PRK09267 flavodoxin FldA; Validated
Probab=27.02 E-value=77 Score=20.40 Aligned_cols=24 Identities=21% Similarity=0.512 Sum_probs=18.7
Q ss_pred CCccccCHHHHHHHHHHHHHhcCC
Q psy15116 5 DDPRQWSESNVAQWLCWAIREFSL 28 (78)
Q Consensus 5 ~DP~~Ws~~~V~~Wl~W~~~ef~L 28 (78)
.+|...|.+.|.+|.....++|.+
T Consensus 146 ~~~~~~td~~i~~w~~~i~~~~~~ 169 (169)
T PRK09267 146 DNQSELTDERIEAWVKQIKPEFGL 169 (169)
T ss_pred CCchhhhHHHHHHHHHHHHHHhcC
Confidence 345567889999999998887653
No 53
>PF14817 HAUS5: HAUS augmin-like complex subunit 5
Probab=25.84 E-value=1.2e+02 Score=24.88 Aligned_cols=38 Identities=13% Similarity=0.200 Sum_probs=27.2
Q ss_pred HHHHHHHHhcCCCCCCCCCCCCCHHHHhcCCHHHHhhhCCCCChHHHHHHH
Q psy15116 17 QWLCWAIREFSLEGVTLHQFYMRGKDICSMGKESFLARAPPFMGDILWEHL 67 (78)
Q Consensus 17 ~Wl~W~~~ef~L~~~~~~~f~m~G~~LC~lt~edF~~~~p~~~GdiL~~hL 67 (78)
+=.+|+.+|+++++.. .-+.+.|+++|-+ .|--.|.||
T Consensus 5 el~~Wa~eEmg~p~~~------------~P~~~~lrrlC~G-~~~~IWkfl 42 (632)
T PF14817_consen 5 ELKRWAQEEMGYPPAS------------LPSDDYLRRLCRG-NMAPIWKFL 42 (632)
T ss_pred HHHHHHHHHhCCCCCC------------CCCHHHHHHHhcc-CChHHHHHH
Confidence 3356889999998653 3466778888875 566667665
No 54
>COG0056 AtpA F0F1-type ATP synthase, alpha subunit [Energy production and conversion]
Probab=25.73 E-value=28 Score=27.71 Aligned_cols=18 Identities=22% Similarity=0.586 Sum_probs=15.7
Q ss_pred CChHHHHHHHHHHHHhcc
Q psy15116 58 FMGDILWEHLEILQKEYL 75 (78)
Q Consensus 58 ~~GdiL~~hL~~lk~~~~ 75 (78)
+.||++|.|=.+|-|+.-
T Consensus 286 yPGDVFYlHSrLLERAak 303 (504)
T COG0056 286 YPGDVFYLHSRLLERAAK 303 (504)
T ss_pred CCCceeehhHHHHHHHHh
Confidence 579999999999988764
No 55
>TIGR01594 holin_lambda phage holin, lambda family. This model represents one of a large number of mutally dissimilar families of phage holins. Holins act against the host cell membrane to allow lytic enzymes of the phage to reach the bacterial cell wall. This family includes the product of the S gene of phage lambda.
Probab=24.15 E-value=79 Score=19.87 Aligned_cols=21 Identities=29% Similarity=0.677 Sum_probs=15.1
Q ss_pred CcCCCccccCHHHHHHHHHHHHH
Q psy15116 2 YTLDDPRQWSESNVAQWLCWAIR 24 (78)
Q Consensus 2 ~vP~DP~~Ws~~~V~~Wl~W~~~ 24 (78)
+.|++|..| .++..|+....+
T Consensus 1 mm~~~P~~W--~~ll~~l~~~~~ 21 (107)
T TIGR01594 1 MMIKEPDLW--AALLSWLQDAWR 21 (107)
T ss_pred CCCCCccHH--HHHHHHHHHHhh
Confidence 358899999 677777774443
No 56
>PF02209 VHP: Villin headpiece domain; InterPro: IPR003128 Villin is an F-actin bundling protein involved in the maintenance of the microvilli of the absorptive epithelia. The villin-type "headpiece" domain is a modular motif found at the extreme C terminus of larger "core" domains in over 25 cytoskeletal proteins in plants and animals, often in assocation with the Gelsolin repeat. Although the headpiece is classified as an F-actin-binding domain, it has been shown that not all headpiece domains are intrinsically F-actin-binding motifs, surface charge distribution may be an important element for F-actin recognition []. An autonomously folding, 35 residue, thermostable subdomain (HP36) of the full-length 76 amino acid residue villin headpiece, is the smallest known example of a cooperatively folded domain of a naturally occurring protein. The structure of HP36, as determined by NMR spectroscopy, consists of three short helices surrounding a tightly packed hydrophobic core []. ; GO: 0003779 actin binding, 0007010 cytoskeleton organization; PDB: 1ZV6_A 1QZP_A 1UND_A 2PPZ_A 3TJW_B 1YU8_X 2JM0_A 1WY4_A 3MYC_A 1YU5_X ....
Probab=23.53 E-value=75 Score=16.27 Aligned_cols=10 Identities=30% Similarity=0.697 Sum_probs=4.7
Q ss_pred HhcCCHHHHh
Q psy15116 43 ICSMGKESFL 52 (78)
Q Consensus 43 LC~lt~edF~ 52 (78)
+..||+++|.
T Consensus 10 vFgm~~~eF~ 19 (36)
T PF02209_consen 10 VFGMSREEFY 19 (36)
T ss_dssp HHSS-HHHHH
T ss_pred HHCCCHHHHH
Confidence 4455555554
No 57
>KOG3557|consensus
Probab=23.11 E-value=86 Score=26.10 Aligned_cols=43 Identities=23% Similarity=0.438 Sum_probs=33.0
Q ss_pred CHHHHHHHHHHHHHhcCCCCCCCCCC-CCCHHHHhcCCHHHHhhhCCC
Q psy15116 11 SESNVAQWLCWAIREFSLEGVTLHQF-YMRGKDICSMGKESFLARAPP 57 (78)
Q Consensus 11 s~~~V~~Wl~W~~~ef~L~~~~~~~f-~m~G~~LC~lt~edF~~~~p~ 57 (78)
+.++|+.|++ .+-|+=..+ ..+ ..+|.+|..+++++....+|.
T Consensus 635 ~peevr~Wlq--aknFs~~~V--~~lgiLtg~ql~~l~~~el~~~~~~ 678 (721)
T KOG3557|consen 635 IPEEVRAWLQ--AKNFSPGTV--AHLGILTGAQLNSLNKDELQFVGPQ 678 (721)
T ss_pred ChHHHHHHHH--hccCCccch--hhcccccchhhcccCchhhhhcCcc
Confidence 6789999997 444554333 445 589999999999998888884
No 58
>KOG0373|consensus
Probab=22.93 E-value=86 Score=23.08 Aligned_cols=54 Identities=24% Similarity=0.437 Sum_probs=38.3
Q ss_pred HHHHHHHHHHHhcCCCCCCCCCCCCCHHHHhcCCHHHHhhhC-------CC-CChHH---HHHHHHHHHHhc
Q psy15116 14 NVAQWLCWAIREFSLEGVTLHQFYMRGKDICSMGKESFLARA-------PP-FMGDI---LWEHLEILQKEY 74 (78)
Q Consensus 14 ~V~~Wl~W~~~ef~L~~~~~~~f~m~G~~LC~lt~edF~~~~-------p~-~~Gdi---L~~hL~~lk~~~ 74 (78)
++-+|+.|+++-.-|++-+ =++||.|-+|-...-+ |- ..||| +|.-+++.|...
T Consensus 5 d~d~wi~~vk~ckyLpE~e-------lk~LCe~v~d~L~eEsNvqPV~tPVTvCGDIHGQFyDL~eLFrtgG 69 (306)
T KOG0373|consen 5 DLDQWIETVKKCKYLPENE-------LKRLCEMVKDILMEESNVQPVSTPVTVCGDIHGQFYDLLELFRTGG 69 (306)
T ss_pred CHHHHHHHHHHcCCCCHHH-------HHHHHHHHHHHHhhhcCccccCCCeeEeeccchhHHHHHHHHHhcC
Confidence 4668999998877776543 5789999888776543 21 25765 788888888755
No 59
>KOG1738|consensus
Probab=20.28 E-value=28 Score=28.53 Aligned_cols=51 Identities=12% Similarity=0.220 Sum_probs=35.7
Q ss_pred ccccCHHHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHhcCCHHHHhhhCCC
Q psy15116 7 PRQWSESNVAQWLCWAIREFSLEGVTLHQFYMRGKDICSMGKESFLARAPP 57 (78)
Q Consensus 7 P~~Ws~~~V~~Wl~W~~~ef~L~~~~~~~f~m~G~~LC~lt~edF~~~~p~ 57 (78)
-..||..+|..|++=...+-+=.--.+..+.+.|++|-.++.++|....-.
T Consensus 4 v~~wsp~~va~w~rgldd~m~~Y~~~~e~~~~~g~ql~~~~pq~le~lg~r 54 (638)
T KOG1738|consen 4 VETWTPKQVADWIRGLDDSMQSYLAIFEDALIPGRQLLRLKPQSLETLGVR 54 (638)
T ss_pred ccccCchhhhhHhhcccHhhhHHHHHHHHhhcccccccccChHHHHHHhhh
Confidence 358999999999983322222111234677899999999999998865543
Done!