RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy15116
(78 letters)
>2jv3_A ETS1 proto-oncogene; ETS-1 pointed (PNT) domain, MAP kinase
phosphorylation site, alpha-helical bundle,
transcription factor, DNA-binding, nucleus; NMR {Mus
musculus} PDB: 2kmd_A*
Length = 110
Score = 100 bits (250), Expect = 1e-29
Identities = 42/69 (60%), Positives = 53/69 (76%)
Query: 5 DDPRQWSESNVAQWLCWAIREFSLEGVTLHQFYMRGKDICSMGKESFLARAPPFMGDILW 64
DPRQW+E++V W+ WA+ EFSL+GV +F M G +C++GKE FL AP F+GDILW
Sbjct: 39 KDPRQWTETHVRDWVMWAVNEFSLKGVDFQKFCMSGAALCALGKECFLELAPDFVGDILW 98
Query: 65 EHLEILQKE 73
EHLEILQKE
Sbjct: 99 EHLEILQKE 107
>1x66_A Friend leukemia integration 1 transcription factor; cell-free
protein synthesis, protein regulation, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 98
Score = 96.9 bits (241), Expect = 2e-28
Identities = 27/69 (39%), Positives = 40/69 (57%), Gaps = 1/69 (1%)
Query: 6 DPRQWSESNVAQWLCWAIREFSLEGVTLHQFY-MRGKDICSMGKESFLARAPPFMGDILW 64
DP W++ +V QWL WAI+E+SL + F M GK++C M KE FL + ++L
Sbjct: 23 DPTLWTQEHVRQWLEWAIKEYSLMEIDTSFFQNMDGKELCKMNKEDFLRATTLYNTEVLL 82
Query: 65 EHLEILQKE 73
HL L++
Sbjct: 83 SHLSYLRES 91
>1sxe_A Transcriptional regulator ERG; alpha helical, signaling protein;
NMR {Homo sapiens} SCOP: a.60.1.1
Length = 97
Score = 93.9 bits (233), Expect = 3e-27
Identities = 28/71 (39%), Positives = 40/71 (56%), Gaps = 1/71 (1%)
Query: 6 DPRQWSESNVAQWLCWAIREFSLEGVTLHQFY-MRGKDICSMGKESFLARAPPFMGDILW 64
DP WS +V QWL WA++E+ L V + F + GK++C M K+ F P + DIL
Sbjct: 26 DPTLWSTDHVRQWLEWAVKEYGLPDVNILLFQNIDGKELCKMTKDDFQRLTPSYNADILL 85
Query: 65 EHLEILQKEYL 75
HL L++ L
Sbjct: 86 SHLHYLRETPL 96
>2ytu_A Friend leukemia integration 1 transcription factor; cell-free
protein synthesis, protein regulation, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 128
Score = 94.5 bits (234), Expect = 4e-27
Identities = 28/72 (38%), Positives = 42/72 (58%), Gaps = 1/72 (1%)
Query: 6 DPRQWSESNVAQWLCWAIREFSLEGVTLHQFY-MRGKDICSMGKESFLARAPPFMGDILW 64
DP W++ +V QWL WAI+E+SL + F M GK++C M KE FL + ++L
Sbjct: 37 DPTLWTQEHVRQWLEWAIKEYSLMEIDTSFFQNMDGKELCKMNKEDFLRATTLYNTEVLL 96
Query: 65 EHLEILQKEYLV 76
HL L++ L+
Sbjct: 97 SHLSYLRESSLL 108
>2dkx_A SAM pointed domain-containing ETS transcription factor; cell-free
protein synthesis, protein regulation, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 96
Score = 93.1 bits (231), Expect = 5e-27
Identities = 25/69 (36%), Positives = 38/69 (55%), Gaps = 1/69 (1%)
Query: 6 DPRQWSESNVAQWLCWAIREFSLEGVTLHQFYMRGKDICSMGKESFLARAPPFMGDILWE 65
DP WS SNV +WL W ++ L + + GK++C+M +E F R+ P GD+L
Sbjct: 23 DPMDWSPSNVQKWLLWTEHQYRLPPMGKAFQELAGKELCAMSEEQFRQRS-PLGGDVLHA 81
Query: 66 HLEILQKEY 74
HL+I +
Sbjct: 82 HLDIWKSAA 90
>2qar_B Telsam domain; polymer, crystallization modules, sterIle alpha
motif, hydro regulator; 2.40A {Escherichia coli}
Length = 93
Score = 92.8 bits (230), Expect = 6e-27
Identities = 29/69 (42%), Positives = 40/69 (57%), Gaps = 1/69 (1%)
Query: 6 DPRQWSESNVAQWLCWAIREFSLEGVTLHQFYMRGKDICSMGKESFLARAPPFMGDILWE 65
P WS +VAQWL WA EFSL + + F M GK + + KE F R+ P GD+L+E
Sbjct: 11 QPIYWSRDDVAQWLKWAENEFSLSPIDSNTFEMNGKALLLLTKEDFRYRS-PHSGDVLYE 69
Query: 66 HLEILQKEY 74
L+ + K+
Sbjct: 70 LLQHILKQR 78
>1sxd_A GA repeat binding protein, alpha; alpha helical, transcription,
signaling protein; NMR {Mus musculus} SCOP: a.60.1.1
Length = 91
Score = 91.5 bits (227), Expect = 2e-26
Identities = 28/71 (39%), Positives = 42/71 (59%), Gaps = 2/71 (2%)
Query: 6 DPRQWSESNVAQWLCWAIREFSLEGVTLHQFYMRGKDICSMGKESFLARAPPFMGDILWE 65
DP WS V W+ W ++EFS+ + L + G+++CS+ +E F R P G+ILW
Sbjct: 22 DPIHWSTDQVLHWVVWVMKEFSMTDIDLTTLNISGRELCSLNQEDFFQRVPR--GEILWS 79
Query: 66 HLEILQKEYLV 76
HLE+L+K L
Sbjct: 80 HLELLRKYVLA 90
>1ji7_A ETS-related protein TEL1; helical polymer, transcription; 1.45A
{Homo sapiens} SCOP: a.60.1.1 PDB: 2qar_A 2qb0_A 1lky_A
1lky_B 2qb1_A
Length = 89
Score = 91.2 bits (226), Expect = 2e-26
Identities = 29/68 (42%), Positives = 39/68 (57%), Gaps = 1/68 (1%)
Query: 6 DPRQWSESNVAQWLCWAIREFSLEGVTLHQFYMRGKDICSMGKESFLARAPPFMGDILWE 65
P WS +VAQWL WA EFSL + + F M GK + + KE F R+ P GD L+E
Sbjct: 11 QPIYWSRDDVAQWLKWAENEFSLRPIDSNTFEMNGKALLLLTKEDFRYRS-PHSGDELYE 69
Query: 66 HLEILQKE 73
L+ + K+
Sbjct: 70 LLQHILKQ 77
>1sv0_A ETS DNA-binding protein pokkuri; alpha-helix, 3(10) helix,
transcription; 2.07A {Drosophila melanogaster} SCOP:
a.60.1.1 PDB: 1sv4_A
Length = 85
Score = 89.6 bits (222), Expect = 9e-26
Identities = 25/69 (36%), Positives = 36/69 (52%), Gaps = 1/69 (1%)
Query: 6 DPRQWSESNVAQWLCWAIREFSLEGVTLHQFYMRGKDICSMGKESFLARAPPFMGDILWE 65
DPR WS +V +L + +REF L + F M GK +C + + F R P GD+L
Sbjct: 9 DPRLWSREDVLVFLRFCVREFDLPKLDFDLFQMNGKRLCLLTRADFGHRCPG-AGDVLHN 67
Query: 66 HLEILQKEY 74
L++L E
Sbjct: 68 VLQMLIIES 76
>1sv0_C Modulator of the activity of ETS CG15085-PA; alpha-helix, 3(10)
helix, transcription; 2.07A {Drosophila melanogaster}
SCOP: a.60.1.1
Length = 82
Score = 87.6 bits (217), Expect = 6e-25
Identities = 18/72 (25%), Positives = 31/72 (43%), Gaps = 3/72 (4%)
Query: 6 DPRQWSESNVAQWL--CWAIREFSLEGVTLHQFYMRGKDICSMGKESFLARAPPFMGDIL 63
DPR W+ ++V +WL + +F M GK +C M + +L R P G +L
Sbjct: 10 DPRDWTRADVWKWLINMAVSEGLEVTAELPQKFPMNGKALCLMSLDMYLCRV-PVGGKML 68
Query: 64 WEHLEILQKEYL 75
+ + +
Sbjct: 69 YRDFRVRLARAM 80
>2qb0_B Telsam domain - lysozyme chimera; helical polymer, hydrolase
regulator; 2.56A {Escherichia coli}
Length = 241
Score = 79.3 bits (194), Expect = 4e-20
Identities = 29/69 (42%), Positives = 40/69 (57%), Gaps = 1/69 (1%)
Query: 6 DPRQWSESNVAQWLCWAIREFSLEGVTLHQFYMRGKDICSMGKESFLARAPPFMGDILWE 65
P WS +VAQWL WA EFSL + + F M GK + + KE F R+ P GD+L+E
Sbjct: 11 QPIYWSRDDVAQWLKWAENEFSLRPIDSNTFEMNGKALLLLTKEDFRYRS-PHSGDVLYE 69
Query: 66 HLEILQKEY 74
L+ + K+
Sbjct: 70 LLQHILKQA 78
>2e8p_A ELF3 protein; cell-free protein synthesis, protein regulation,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 92
Score = 74.3 bits (182), Expect = 1e-19
Identities = 15/68 (22%), Positives = 27/68 (39%), Gaps = 3/68 (4%)
Query: 6 DPRQWSESNVAQWLCWAIRE--FSLEGVTLHQFYMRGKDICSMGKESFLARAPPFMGDIL 63
P+ WS++ V W+ + + + + + + M G +C+ E P GD L
Sbjct: 23 QPQFWSKTQVLDWISYQVEKNKYDASAIDFSRCDMDGATLCNCALEELRLVFGPL-GDQL 81
Query: 64 WEHLEILQ 71
L L
Sbjct: 82 HAQLRDLT 89
>1pk1_B Sex COMB on midleg CG9495-PA; hetero SAM domain, polymers,
transcriptional repression, transcription repression;
1.80A {Drosophila melanogaster} SCOP: a.60.1.2 PDB:
1pk3_A
Length = 89
Score = 30.6 bits (69), Expect = 0.013
Identities = 8/48 (16%), Positives = 18/48 (37%)
Query: 5 DDPRQWSESNVAQWLCWAIREFSLEGVTLHQFYMRGKDICSMGKESFL 52
P W+ V Q++ ++ G + + GK + + E +
Sbjct: 12 SQPIDWTIEEVIQYIESNDNSLAVHGDLFRKHEIDGKALLRLNSERMM 59
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 27.7 bits (61), Expect = 0.33
Identities = 14/74 (18%), Positives = 22/74 (29%), Gaps = 13/74 (17%)
Query: 2 YTLDDPRQWSESNVAQWLCWAIREFSLEGVTLHQFYMRGKDICSMGKESFLARAPPFMGD 61
Y Q L + EF Y+ G DI + A+
Sbjct: 67 YVSSLVEPSKVGQFDQVLNLCLTEF-------ENCYLEGNDI-----HALAAKLLQENDT 114
Query: 62 ILWEHLEILQKEYL 75
L + E++ K Y+
Sbjct: 115 TLVKTKELI-KNYI 127
>2e8o_A SAM domain and HD domain-containing protein 1; cell-free protein
synthesis, protein regulation, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 103
Score = 26.0 bits (57), Expect = 0.96
Identities = 4/15 (26%), Positives = 6/15 (40%)
Query: 5 DDPRQWSESNVAQWL 19
D + W V +L
Sbjct: 25 PDYKTWGPEQVCSFL 39
>1nhy_A EF-1-gamma 1, elongation factor 1-gamma 1; protein synthesis,
GST-like, translation; 3.00A {Saccharomyces cerevisiae}
SCOP: a.45.1.1 c.47.1.5
Length = 219
Score = 25.5 bits (56), Expect = 1.8
Identities = 11/72 (15%), Positives = 22/72 (30%), Gaps = 5/72 (6%)
Query: 5 DDPRQWSESNVAQWLCWAIREFSLEGVTLHQFYMRGKDICSMGKESFLARAPPFMGDILW 64
DD ++ + +W A + ++ G +S + + DI
Sbjct: 88 DDLNAQAQ--IIRWQSLANSDLCIQIANTIVPLKGGAPYNKKSVDSAMDAVDKIV-DIFE 144
Query: 65 EHLEILQKEYLV 76
L+ YL
Sbjct: 145 NRLK--NYTYLA 154
>2d8c_A Phosphatidylcholine:ceramide cholinephosphotransferase 1;
cell-free protein synthesis, protein regulation, lipid
metabolism, structural genomics; NMR {Mus musculus}
SCOP: a.60.1.2
Length = 97
Score = 25.1 bits (54), Expect = 1.8
Identities = 19/79 (24%), Positives = 33/79 (41%), Gaps = 16/79 (20%)
Query: 3 TLDDPRQWSESNVAQWLCWAIREFSLEGV--TLHQFYMRGKDICSMGKESFLARAPPF-- 58
T+ + WS VA WL E ++ L G+D+ ++ +E F + PP
Sbjct: 13 TMKEVVYWSPKKVADWL----LENAMPEYCEPLEH--FTGQDLINLTQEDF--KKPPLYR 64
Query: 59 --MGDI--LWEHLEILQKE 73
+ L + +E L+ E
Sbjct: 65 VSSDNGQRLLDMIETLKME 83
>2hc9_A Leucine aminopeptidase 1; carbonate, structural genomics, P protein
structure initiative, NEW YORK SGX research center
structural genomics; 1.85A {Caenorhabditis elegans} PDB:
2hb6_A
Length = 491
Score = 24.4 bits (53), Expect = 4.2
Identities = 5/19 (26%), Positives = 8/19 (42%)
Query: 51 FLARAPPFMGDILWEHLEI 69
+ F + W HL+I
Sbjct: 440 LIGAHIGFGEGLRWLHLDI 458
>2cjg_A L-lysine-epsilon aminotransferase; internal aldimine, pyridoxal
phosphate, PLP, RV3290C, lysine amino transferase; HET:
PMP; 1.95A {Mycobacterium tuberculosis} PDB: 2cjd_A*
2cin_A* 2cjh_A* 2jjg_A* 2jje_A* 2jjh_A* 2jjf_A
Length = 449
Score = 24.1 bits (53), Expect = 5.6
Identities = 7/29 (24%), Positives = 11/29 (37%), Gaps = 1/29 (3%)
Query: 46 MGKESFLARAPPFMGDILWEHLEILQKEY 74
+ E RA G L L+ L ++
Sbjct: 348 IEAEGLFERAVQ-HGKYLRARLDELAADF 375
>1ohv_A 4-aminobutyrate aminotransferase; PLP-dependent enzyme, 4- AMIN
acid, antiepileptic drug target; HET: PLP; 2.3A {Sus
scrofa} SCOP: c.67.1.4 PDB: 1ohw_A* 1ohy_A*
Length = 472
Score = 23.8 bits (52), Expect = 7.8
Identities = 9/27 (33%), Positives = 12/27 (44%), Gaps = 1/27 (3%)
Query: 48 KESFLARAPPFMGDILWEHLEILQKEY 74
+E L+ A G +L L LQ Y
Sbjct: 373 REDLLSNAAH-AGKVLLTGLLDLQARY 398
>1kw4_A Polyhomeotic; SAM domain, polycomb group, polymer, DNA binding
protein; 1.75A {Drosophila melanogaster} SCOP: a.60.1.2
PDB: 1pk1_A
Length = 89
Score = 23.3 bits (50), Expect = 8.3
Identities = 5/38 (13%), Positives = 12/38 (31%), Gaps = 9/38 (23%)
Query: 5 DDPRQWSESNVAQWL---------CWAIREFSLEGVTL 33
WS +V+ ++ + ++G L
Sbjct: 12 PPISSWSVDDVSNFIRELPGCQDYVDDFIQQEIDGQAL 49
>1t3i_A Probable cysteine desulfurase; PLP-binding enzyme, transferase;
HET: 2OS PLP; 1.80A {Synechocystis SP} SCOP: c.67.1.3
Length = 420
Score = 23.6 bits (52), Expect = 8.5
Identities = 8/14 (57%), Positives = 8/14 (57%)
Query: 47 GKESFLARAPPFMG 60
GKE L PPF G
Sbjct: 243 GKEEILEAMPPFFG 256
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.326 0.140 0.473
Gapped
Lambda K H
0.267 0.0665 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,282,992
Number of extensions: 59192
Number of successful extensions: 166
Number of sequences better than 10.0: 1
Number of HSP's gapped: 154
Number of HSP's successfully gapped: 28
Length of query: 78
Length of database: 6,701,793
Length adjustment: 47
Effective length of query: 31
Effective length of database: 5,389,506
Effective search space: 167074686
Effective search space used: 167074686
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 51 (23.6 bits)