BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy15117
(114 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2JV3|A Chain A, Ets-1 Pnt Domain (29-138) Nmr Structure Ensemble
Length = 110
Score = 122 bits (305), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 55/94 (58%), Positives = 72/94 (76%)
Query: 1 MTEALKASFASWEKEQIRLNIVKDPRQWSESNVAQWLCWAIREFSLEGVTLHQFYMRGKD 60
M++ALKA+F+ + KEQ RL I KDPRQW+E++V W+ WA+ EFSL+GV +F M G
Sbjct: 17 MSQALKATFSGFTKEQQRLGIPKDPRQWTETHVRDWVMWAVNEFSLKGVDFQKFCMSGAA 76
Query: 61 ICSMGKESFLARAPPFMGDILWEHLEILQKANAK 94
+C++GKE FL AP F+GDILWEHLEILQK + K
Sbjct: 77 LCALGKECFLELAPDFVGDILWEHLEILQKEDVK 110
>pdb|2KMD|A Chain A, Ras Signaling Requires Dynamic Properties Of Ets1 For
Phosphorylation- Enhanced Binding To Co-Activator Cbp
Length = 113
Score = 122 bits (305), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 55/94 (58%), Positives = 72/94 (76%)
Query: 1 MTEALKASFASWEKEQIRLNIVKDPRQWSESNVAQWLCWAIREFSLEGVTLHQFYMRGKD 60
M++ALKA+F+ + KEQ RL I KDPRQW+E++V W+ WA+ EFSL+GV +F M G
Sbjct: 20 MSQALKATFSGFTKEQQRLGIPKDPRQWTETHVRDWVMWAVNEFSLKGVDFQKFCMSGAA 79
Query: 61 ICSMGKESFLARAPPFMGDILWEHLEILQKANAK 94
+C++GKE FL AP F+GDILWEHLEILQK + K
Sbjct: 80 LCALGKECFLELAPDFVGDILWEHLEILQKEDVK 113
>pdb|1SXD|A Chain A, Solution Structure Of The Pointed (Pnt) Domain From
Mgabpa
Length = 91
Score = 76.3 bits (186), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 34/84 (40%), Positives = 50/84 (59%), Gaps = 2/84 (2%)
Query: 7 ASFASWEKEQIRLNIVKDPRQWSESNVAQWLCWAIREFSLEGVTLHQFYMRGKDICSMGK 66
A+ + KEQ RL I DP WS V W+ W ++EFS+ + L + G+++CS+ +
Sbjct: 5 AALEGYRKEQERLGIPYDPIHWSTDQVLHWVVWVMKEFSMTDIDLTTLNISGRELCSLNQ 64
Query: 67 ESFLARAPPFMGDILWEHLEILQK 90
E F R P G+ILW HLE+L+K
Sbjct: 65 EDFFQRVP--RGEILWSHLELLRK 86
>pdb|1SXE|A Chain A, The Solution Structure Of The Pointed (Pnt) Domain From
The Transcrition Factor Erg
Length = 97
Score = 58.9 bits (141), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 42/75 (56%), Gaps = 1/75 (1%)
Query: 18 RLNIVKDPRQWSESNVAQWLCWAIREFSLEGVTLHQFY-MRGKDICSMGKESFLARAPPF 76
R+ + DP WS +V QWL WA++E+ L V + F + GK++C M K+ F P +
Sbjct: 20 RVIVPADPTLWSTDHVRQWLEWAVKEYGLPDVNILLFQNIDGKELCKMTKDDFQRLTPSY 79
Query: 77 MGDILWEHLEILQKA 91
DIL HL L++
Sbjct: 80 NADILLSHLHYLRET 94
>pdb|2DKX|A Chain A, Solution Structure Of The Sam_pnt-Domain Of Ets
Transcription Factor Pdef (Prostate Ets)
Length = 96
Score = 58.2 bits (139), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 29/73 (39%), Positives = 42/73 (57%), Gaps = 1/73 (1%)
Query: 19 LNIVKDPRQWSESNVAQWLCWAIREFSLEGVTLHQFYMRGKDICSMGKESFLARAPPFMG 78
LNI DP WS SNV +WL W ++ L + + GK++C+M +E F R+ P G
Sbjct: 18 LNITADPMDWSPSNVQKWLLWTEHQYRLPPMGKAFQELAGKELCAMSEEQFRQRS-PLGG 76
Query: 79 DILWEHLEILQKA 91
D+L HL+I + A
Sbjct: 77 DVLHAHLDIWKSA 89
>pdb|1LKY|B Chain B, Structure Of The Wild-Type Tel-Sam Polymer
pdb|1LKY|D Chain D, Structure Of The Wild-Type Tel-Sam Polymer
pdb|1LKY|F Chain F, Structure Of The Wild-Type Tel-Sam Polymer
Length = 77
Score = 58.2 bits (139), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 30/66 (45%), Positives = 40/66 (60%), Gaps = 1/66 (1%)
Query: 25 PRQWSESNVAQWLCWAIREFSLEGVTLHQFYMRGKDICSMGKESFLARAPPFMGDILWEH 84
P WS +VAQWL WA EFSL + + F M GKD+ + KE F R+ P GD+L+E
Sbjct: 12 PIYWSRDDVAQWLKWAENEFSLRPIDSNTFEMNGKDLLLLTKEDFRYRS-PHSGDVLYEL 70
Query: 85 LEILQK 90
L+ + K
Sbjct: 71 LQHILK 76
>pdb|1X66|A Chain A, Solution Structure Of The Sam_pnt-Domain Of The Human
Friend Leukemiaintegration 1 Transcription Factor
Length = 98
Score = 57.4 bits (137), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 46/77 (59%), Gaps = 1/77 (1%)
Query: 18 RLNIVKDPRQWSESNVAQWLCWAIREFSLEGVTLHQFY-MRGKDICSMGKESFLARAPPF 76
R+ + DP W++ +V QWL WAI+E+SL + F M GK++C M KE FL +
Sbjct: 17 RVIVPADPTLWTQEHVRQWLEWAIKEYSLMEIDTSFFQNMDGKELCKMNKEDFLRATTLY 76
Query: 77 MGDILWEHLEILQKANA 93
++L HL L+++++
Sbjct: 77 NTEVLLSHLSYLRESSS 93
>pdb|2YTU|A Chain A, Solution Structure Of The Sam_pnt-Domain Of The Human
Friend Leukemiaintegration 1 Transcription Factor
Length = 128
Score = 57.4 bits (137), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 44/75 (58%), Gaps = 1/75 (1%)
Query: 18 RLNIVKDPRQWSESNVAQWLCWAIREFSLEGVTLHQF-YMRGKDICSMGKESFLARAPPF 76
R+ + DP W++ +V QWL WAI+E+SL + F M GK++C M KE FL +
Sbjct: 31 RVIVPADPTLWTQEHVRQWLEWAIKEYSLMEIDTSFFQNMDGKELCKMNKEDFLRATTLY 90
Query: 77 MGDILWEHLEILQKA 91
++L HL L+++
Sbjct: 91 NTEVLLSHLSYLRES 105
>pdb|2QB0|B Chain B, Structure Of The 2tel Crystallization Module Fused To T4
Lysozyme With An Ala-Gly-Pro Linker.
pdb|2QB0|D Chain D, Structure Of The 2tel Crystallization Module Fused To T4
Lysozyme With An Ala-Gly-Pro Linker
Length = 241
Score = 56.6 bits (135), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 31/68 (45%), Positives = 42/68 (61%), Gaps = 2/68 (2%)
Query: 25 PRQWSESNVAQWLCWAIREFSLEGVTLHQFYMRGKDICSMGKESFLARAPPFMGDILWEH 84
P WS +VAQWL WA EFSL + + F M GK + + KE F R+ P GD+L+E
Sbjct: 12 PIYWSRDDVAQWLKWAENEFSLRPIDSNTFEMNGKALLLLTKEDFRYRS-PHSGDVLYEL 70
Query: 85 LE-ILQKA 91
L+ IL++A
Sbjct: 71 LQHILKQA 78
>pdb|2QAR|B Chain B, Structure Of The 2tel Crystallization Module Fused To T4
Lysozyme With A Helical Linker.
pdb|2QAR|E Chain E, Structure Of The 2tel Crystallization Module Fused To T4
Lysozyme With A Helical Linker
Length = 93
Score = 54.7 bits (130), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 29/66 (43%), Positives = 39/66 (59%), Gaps = 1/66 (1%)
Query: 25 PRQWSESNVAQWLCWAIREFSLEGVTLHQFYMRGKDICSMGKESFLARAPPFMGDILWEH 84
P WS +VAQWL WA EFSL + + F M GK + + KE F R+ P GD+L+E
Sbjct: 12 PIYWSRDDVAQWLKWAENEFSLSPIDSNTFEMNGKALLLLTKEDFRYRS-PHSGDVLYEL 70
Query: 85 LEILQK 90
L+ + K
Sbjct: 71 LQHILK 76
>pdb|2QB1|A Chain A, 2tel Crystallization Module
pdb|2QB1|B Chain B, 2tel Crystallization Module
Length = 78
Score = 54.7 bits (130), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 31/68 (45%), Positives = 41/68 (60%), Gaps = 2/68 (2%)
Query: 25 PRQWSESNVAQWLCWAIREFSLEGVTLHQFYMRGKDICSMGKESFLARAPPFMGDILWEH 84
P WS +VAQWL WA EFSL + + F M GK + + KE F R+ P GD+L+E
Sbjct: 12 PIYWSRDDVAQWLKWAENEFSLRPIDSNTFEMNGKALLLLTKEDFRYRS-PHSGDVLYEL 70
Query: 85 LE-ILQKA 91
L+ IL +A
Sbjct: 71 LQHILAQA 78
>pdb|2QAR|A Chain A, Structure Of The 2tel Crystallization Module Fused To T4
Lysozyme With A Helical Linker.
pdb|2QAR|D Chain D, Structure Of The 2tel Crystallization Module Fused To T4
Lysozyme With A Helical Linker
Length = 86
Score = 53.5 bits (127), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 30/71 (42%), Positives = 39/71 (54%), Gaps = 1/71 (1%)
Query: 25 PRQWSESNVAQWLCWAIREFSLEGVTLHQFYMRGKDICSMGKESFLARAPPFMGDILWEH 84
P WS +VAQWL WA EFSL + + F M GK + + KE F R+ P GD L+E
Sbjct: 13 PIYWSRDDVAQWLKWAENEFSLSPIDSNTFEMNGKALLLLTKEDFRYRS-PHSGDELYEL 71
Query: 85 LEILQKANAKG 95
L+ + K G
Sbjct: 72 LQHILKQRPGG 82
>pdb|1LKY|A Chain A, Structure Of The Wild-Type Tel-Sam Polymer
pdb|1LKY|C Chain C, Structure Of The Wild-Type Tel-Sam Polymer
pdb|1LKY|E Chain E, Structure Of The Wild-Type Tel-Sam Polymer
Length = 77
Score = 52.4 bits (124), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 29/66 (43%), Positives = 38/66 (57%), Gaps = 1/66 (1%)
Query: 25 PRQWSESNVAQWLCWAIREFSLEGVTLHQFYMRGKDICSMGKESFLARAPPFMGDILWEH 84
P WS +VAQWL WA EFSL + + F M GK + + KE F R+ P GD L+E
Sbjct: 12 PIYWSRDDVAQWLKWAENEFSLRPIDSNTFEMNGKALLLLTKEDFRYRS-PHSGDRLYEL 70
Query: 85 LEILQK 90
L+ + K
Sbjct: 71 LQHILK 76
>pdb|2QB0|A Chain A, Structure Of The 2tel Crystallization Module Fused To T4
Lysozyme With An Ala-Gly-Pro Linker.
pdb|2QB0|C Chain C, Structure Of The 2tel Crystallization Module Fused To T4
Lysozyme With An Ala-Gly-Pro Linker
Length = 77
Score = 52.4 bits (124), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 29/66 (43%), Positives = 38/66 (57%), Gaps = 1/66 (1%)
Query: 25 PRQWSESNVAQWLCWAIREFSLEGVTLHQFYMRGKDICSMGKESFLARAPPFMGDILWEH 84
P WS +VAQWL WA EFSL + + F M GK + + KE F R+ P GD L+E
Sbjct: 12 PIYWSRDDVAQWLKWAENEFSLRPIDSNTFEMNGKALLLLTKEDFRYRS-PHSGDELYEL 70
Query: 85 LEILQK 90
L+ + K
Sbjct: 71 LQHILK 76
>pdb|1JI7|A Chain A, Crystal Structure Of Tel Sam Polymer
pdb|1JI7|B Chain B, Crystal Structure Of Tel Sam Polymer
pdb|1JI7|C Chain C, Crystal Structure Of Tel Sam Polymer
Length = 89
Score = 49.7 bits (117), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 28/66 (42%), Positives = 37/66 (56%), Gaps = 1/66 (1%)
Query: 25 PRQWSESNVAQWLCWAIREFSLEGVTLHQFYMRGKDICSMGKESFLARAPPFMGDILWEH 84
P WS +VAQWL WA EFSL + + F GK + + KE F R+ P GD L+E
Sbjct: 12 PIYWSRDDVAQWLKWAENEFSLRPIDSNTFEXNGKALLLLTKEDFRYRS-PHSGDELYEL 70
Query: 85 LEILQK 90
L+ + K
Sbjct: 71 LQHILK 76
>pdb|1SV0|A Chain A, Crystal Structure Of Yan-SamMAE-Sam Complex
pdb|1SV0|B Chain B, Crystal Structure Of Yan-SamMAE-Sam Complex
pdb|1SV4|A Chain A, Crystal Structure Of Yan-Sam
pdb|1SV4|B Chain B, Crystal Structure Of Yan-Sam
Length = 85
Score = 47.8 bits (112), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 39/73 (53%), Gaps = 1/73 (1%)
Query: 16 QIRLNIVKDPRQWSESNVAQWLCWAIREFSLEGVTLHQFYMRGKDICSMGKESFLARAPP 75
Q+ ++ DPR WS +V +L + +REF L + F M GK +C + + F R P
Sbjct: 1 QLPPSLPSDPRLWSREDVLVFLRFCVREFDLPKLDFDLFQMNGKRLCLLTRADFGHRCPG 60
Query: 76 FMGDILWEHLEIL 88
GD+L L++L
Sbjct: 61 -AGDVLHNVLQML 72
>pdb|1SV0|C Chain C, Crystal Structure Of Yan-SamMAE-Sam Complex
pdb|1SV0|D Chain D, Crystal Structure Of Yan-SamMAE-Sam Complex
Length = 82
Score = 34.7 bits (78), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 33/66 (50%), Gaps = 3/66 (4%)
Query: 24 DPRQWSESNVAQWLC-WAIRE-FSLEGVTLHQFYMRGKDICSMGKESFLARAPPFMGDIL 81
DPR W+ ++V +WL A+ E + +F M GK +C M + +L R P G +L
Sbjct: 10 DPRDWTRADVWKWLINMAVSEGLEVTAELPQKFPMNGKALCLMSLDMYLCRV-PVGGKML 68
Query: 82 WEHLEI 87
+ +
Sbjct: 69 YRDFRV 74
>pdb|3J17|D Chain D, Structure Of A Transcribing Cypovirus By Cryo-Electron
Microscopy
pdb|3J17|E Chain E, Structure Of A Transcribing Cypovirus By Cryo-Electron
Microscopy
Length = 448
Score = 28.9 bits (63), Expect = 0.84, Method: Composition-based stats.
Identities = 20/59 (33%), Positives = 27/59 (45%), Gaps = 8/59 (13%)
Query: 6 KASFASWEKEQIRLNIVKDPRQWSESNVAQWLCWAIREFSLEGVTLHQFYMRGKDICSM 64
+A F SWE I L+ +D W + L + I SLEG L F R +D+ M
Sbjct: 176 RAKFDSWEGSLISLS--RDVVNW------KILAFLIDLCSLEGEALRAFKTRNRDVFRM 226
>pdb|3IZ3|D Chain D, Cryoem Structure Of Cytoplasmic Polyhedrosis Virus
pdb|3IZ3|E Chain E, Cryoem Structure Of Cytoplasmic Polyhedrosis Virus
Length = 291
Score = 28.5 bits (62), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 27/59 (45%), Gaps = 8/59 (13%)
Query: 6 KASFASWEKEQIRLNIVKDPRQWSESNVAQWLCWAIREFSLEGVTLHQFYMRGKDICSM 64
+A F SWE I L+ +D W + L + I SLEG L F R +D+ M
Sbjct: 176 RAKFDSWEGSLISLS--RDVVNW------KILAFLIDLCSLEGEALRAFKTRNRDVFRM 226
>pdb|3IZX|D Chain D, 3.1 Angstrom Cryoem Structure Of Cytoplasmic Polyhedrosis
Virus
pdb|3IZX|E Chain E, 3.1 Angstrom Cryoem Structure Of Cytoplasmic Polyhedrosis
Virus
Length = 448
Score = 28.5 bits (62), Expect = 0.96, Method: Composition-based stats.
Identities = 20/59 (33%), Positives = 27/59 (45%), Gaps = 8/59 (13%)
Query: 6 KASFASWEKEQIRLNIVKDPRQWSESNVAQWLCWAIREFSLEGVTLHQFYMRGKDICSM 64
+A F SWE I L+ +D W + L + I SLEG L F R +D+ M
Sbjct: 176 RAKFDSWEGSLISLS--RDVVNW------KILAFLIDLCSLEGEALRAFKTRNRDVFRM 226
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.132 0.422
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,433,281
Number of Sequences: 62578
Number of extensions: 118615
Number of successful extensions: 294
Number of sequences better than 100.0: 21
Number of HSP's better than 100.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 271
Number of HSP's gapped (non-prelim): 21
length of query: 114
length of database: 14,973,337
effective HSP length: 77
effective length of query: 37
effective length of database: 10,154,831
effective search space: 375728747
effective search space used: 375728747
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 45 (21.9 bits)