Query psy15117
Match_columns 114
No_of_seqs 102 out of 255
Neff 5.4
Searched_HMMs 46136
Date Fri Aug 16 21:01:31 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy15117.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/15117hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd08542 SAM_PNT-ETS-1 Sterile 100.0 1.2E-41 2.6E-46 232.4 8.6 87 7-93 1-87 (88)
2 cd08543 SAM_PNT-ETS-2 Sterile 100.0 8E-41 1.7E-45 228.7 8.7 87 7-93 1-87 (89)
3 cd08534 SAM_PNT-GABP-alpha Ste 100.0 1.1E-39 2.4E-44 223.1 8.9 86 9-94 3-88 (89)
4 cd08541 SAM_PNT-FLI-1 Sterile 100.0 9.7E-37 2.1E-41 209.3 6.5 83 11-93 3-86 (91)
5 smart00251 SAM_PNT SAM / Point 100.0 9E-36 2E-40 200.6 8.8 82 9-91 1-82 (82)
6 cd08532 SAM_PNT-PDEF-like Ster 100.0 1.1E-35 2.4E-40 198.2 7.5 75 16-92 1-75 (76)
7 cd08540 SAM_PNT-ERG Sterile al 100.0 5.3E-35 1.2E-39 194.5 7.9 72 21-92 1-73 (75)
8 cd08533 SAM_PNT-ETS-1,2 Steril 100.0 8.7E-35 1.9E-39 191.7 7.8 70 22-91 1-70 (71)
9 cd08531 SAM_PNT-ERG_FLI-1 Ster 100.0 9.1E-35 2E-39 193.3 7.9 72 21-92 1-73 (75)
10 PF02198 SAM_PNT: Sterile alph 100.0 1.6E-33 3.5E-38 189.2 6.4 83 10-92 2-84 (84)
11 cd08535 SAM_PNT-Tel_Yan Steril 100.0 1.3E-32 2.8E-37 180.0 7.6 67 23-90 1-67 (68)
12 cd08203 SAM_PNT Sterile alpha 100.0 9.5E-31 2.1E-35 169.6 7.0 66 24-90 1-66 (66)
13 cd08536 SAM_PNT-Mae Sterile al 100.0 3E-30 6.6E-35 167.8 7.3 64 24-88 1-64 (66)
14 cd08538 SAM_PNT-ESE-2-like Ste 100.0 5.2E-30 1.1E-34 171.7 7.5 72 22-94 4-77 (78)
15 cd08757 SAM_PNT_ESE Sterile al 100.0 3E-29 6.6E-34 163.6 7.1 65 24-89 1-67 (68)
16 cd08539 SAM_PNT-ESE-3-like Ste 99.9 6.5E-28 1.4E-32 160.1 6.1 70 22-92 2-73 (74)
17 cd08537 SAM_PNT-ESE-1-like Ste 99.9 7.5E-28 1.6E-32 161.0 6.4 69 22-91 7-77 (78)
18 KOG3804|consensus 99.4 1.8E-13 4E-18 114.1 4.7 74 20-94 57-132 (390)
19 KOG3805|consensus 97.5 1.9E-05 4.1E-10 65.1 -0.4 70 19-90 150-223 (361)
20 PF00536 SAM_1: SAM domain (St 96.1 0.0061 1.3E-07 37.7 2.8 59 27-89 2-64 (64)
21 PF07647 SAM_2: SAM domain (St 96.0 0.005 1.1E-07 38.2 2.2 60 25-88 1-65 (66)
22 cd00166 SAM Sterile alpha moti 95.0 0.016 3.5E-07 34.8 1.8 48 27-78 1-50 (63)
23 KOG4375|consensus 93.7 0.029 6.3E-07 45.4 1.0 50 26-78 208-258 (272)
24 smart00454 SAM Sterile alpha m 93.6 0.071 1.5E-06 32.1 2.5 61 25-89 1-66 (68)
25 PF11814 DUF3335: Peptidase_C3 62.6 11 0.00023 29.6 3.5 53 4-60 93-145 (207)
26 PF00307 CH: Calponin homology 59.9 12 0.00026 24.2 3.0 35 30-64 1-37 (108)
27 PF13495 Phage_int_SAM_4: Phag 58.4 14 0.0003 23.1 3.0 39 8-46 18-59 (85)
28 COG1092 Predicted SAM-dependen 56.3 11 0.00023 32.1 2.7 85 14-109 257-345 (393)
29 cd00014 CH Calponin homology d 53.1 4.4 9.5E-05 26.4 -0.1 38 30-67 3-41 (107)
30 smart00033 CH Calponin homolog 51.5 4.8 0.0001 25.9 -0.1 35 30-64 2-37 (103)
31 KOG3678|consensus 40.2 33 0.00072 31.0 3.3 73 21-96 458-534 (832)
32 PF10281 Ish1: Putative stress 39.3 25 0.00055 19.7 1.7 12 27-38 3-14 (38)
33 COG3208 GrsT Predicted thioest 39.2 16 0.00035 29.3 1.2 37 23-60 186-222 (244)
34 PF14436 EndoU_bacteria: Bacte 32.2 49 0.0011 22.9 2.6 25 23-47 69-93 (128)
35 PF11516 DUF3220: Protein of u 28.8 32 0.0007 23.6 1.2 29 64-94 46-74 (106)
36 PF02184 HAT: HAT (Half-A-TPR) 24.3 31 0.00067 19.4 0.4 10 32-41 19-28 (32)
37 PF15142 INCA1: INCA1 23.7 41 0.00089 25.5 1.0 16 71-86 23-38 (178)
38 PF06073 DUF934: Bacterial pro 22.3 52 0.0011 23.2 1.3 42 56-100 31-78 (110)
39 PF09447 Cnl2_NKP2: Cnl2/NKP2 22.2 88 0.0019 20.3 2.2 35 57-91 12-52 (67)
40 KOG1899|consensus 21.8 40 0.00087 31.1 0.7 45 26-74 548-594 (861)
No 1
>cd08542 SAM_PNT-ETS-1 Sterile alpha motif (SAM)/Pointed domain of ETS-1. SAM Pointed domain of ETS-1 subfamily of ETS transcriptional activators is a protein-protein interaction domain. The ETS-1 activator is regulated by phosphorylation. It contains a docking site for the ERK2 MAP (Mitogen Activated Protein) kinase, while the ERK2 phosphorylation site is located in the N-terminal disordered region upstream of the SAM Pointed domain. Mutations of the kinase docking site residues inhibit phosphorylation. ETS-1 activators play role in a number of different physiological processes, and they are expressed during embryonic development, including blood vessel formation, hematopoietic, lymphoid, neuronal and osteogenic differentiation. The Ets-1 gene is a proto-oncogene involved in progression of different tumors (including breast cancer, meningioma, and prostate cancer). Members of this subfamily are potential molecular targets for selective cancer therapy.
Probab=100.00 E-value=1.2e-41 Score=232.39 Aligned_cols=87 Identities=57% Similarity=1.123 Sum_probs=84.3
Q ss_pred HHHHhHHHHHHhcCCCCCcCCCCHHHHHHHHHHHHHhcCCCCCCCCCCCCChHHhhcCChHHHhhhCCCCChHHHHHHHH
Q psy15117 7 ASFASWEKEQIRLNIVKDPRQWSESNVAQWLCWAIREFSLEGVTLHQFYMRGKDICSMGKESFLARAPPFMGDILWEHLE 86 (114)
Q Consensus 7 ~~~~~~~~e~~~l~iP~DP~~WS~~~V~~Wl~W~~~ef~L~~v~~~~F~m~G~~LC~Lt~edF~~~~p~~~GdiL~~hL~ 86 (114)
+|||||+||++|++||.||+.||++||.+||.|+++||+|+++++++|+|||++||.||+|||++++|+++|||||+||+
T Consensus 1 ~~~~~f~~~q~rl~Ip~DP~~Wt~~~V~~WL~Wa~~ef~L~~i~~~~F~m~Gk~LC~Ls~edF~~~~P~~~GdIL~~HL~ 80 (88)
T cd08542 1 ATFSGFTKEQQRLGIPKDPRQWTETHVRDWVMWAVNEFSLKGVDFQKFCMNGAALCALGKECFLELAPDFVGDILWEHLE 80 (88)
T ss_pred CcchhHhHhhhhcCCCCChhhCCHHHHHHHHHHHHHHcCCCCCCcccCCCCHHHHHcCCHHHHHhHcCCCccHHHHHHHH
Confidence 58999999999999999999999999999999999999999999999999999999999999999999889999999999
Q ss_pred HHHHccc
Q psy15117 87 ILQKANA 93 (114)
Q Consensus 87 ~Lk~~~~ 93 (114)
+||+.+.
T Consensus 81 ~L~k~~~ 87 (88)
T cd08542 81 ILQKEDV 87 (88)
T ss_pred HHHHhcc
Confidence 9998753
No 2
>cd08543 SAM_PNT-ETS-2 Sterile alpha motif (SAM)/Pointed domain of ETS-2. SAM Pointed domain of ETS-2 subfamily of ETS transcriptional regulators is a protein-protein interaction domain. It contains a docking site for Cdk10 (cyclin-dependent kinase 10), a member of the Cdc2 kinase family. The interaction between ETS-2 and Cdk10 kinase inhibits ETS-2 transactivation activity in mammals. ETS-2 is also regulated by ERK2 MAP kinase. ETS-2, which is phosphorylated by ERK2, can interact with coactivators and enhance transactivation. ETS-2 transcriptional activators are involved in embryonic development and cell cycle control. The Ets-2 gene is a proto-oncogene. It is overexpressed in breast and prostate cancer cells and its overexpression is necessary for transformation of such cells. Members of ETS-2 subfamily are potential molecular targets for selective cancer therapy.
Probab=100.00 E-value=8e-41 Score=228.71 Aligned_cols=87 Identities=54% Similarity=1.007 Sum_probs=84.6
Q ss_pred HHHHhHHHHHHhcCCCCCcCCCCHHHHHHHHHHHHHhcCCCCCCCCCCCCChHHhhcCChHHHhhhCCCCChHHHHHHHH
Q psy15117 7 ASFASWEKEQIRLNIVKDPRQWSESNVAQWLCWAIREFSLEGVTLHQFYMRGKDICSMGKESFLARAPPFMGDILWEHLE 86 (114)
Q Consensus 7 ~~~~~~~~e~~~l~iP~DP~~WS~~~V~~Wl~W~~~ef~L~~v~~~~F~m~G~~LC~Lt~edF~~~~p~~~GdiL~~hL~ 86 (114)
+||+||+||++|++||.||..||++||.+||+|+++||+|+++++++|.|||++||.||++||++++|+++|||||+||+
T Consensus 1 ~~f~~f~k~~~rl~Ip~DP~~Wt~~~V~~WL~Wa~~ef~L~~i~~~~F~m~Gk~LC~Ls~edF~~~ap~~~GdIL~~HL~ 80 (89)
T cd08543 1 ATFSGFKKEQRRLGIPKNPWLWTEQQVCQWLLWATNEFSLVNVNFQQFGMNGQELCNLGKERFLELAPDFVGDILWEHLE 80 (89)
T ss_pred CchhHHHHHhHhcCCCCChhhCCHHHHHHHHHHHHHHcCCCCCCcccCCCChHHHHcCCHHHHHhHcCCCcchHHHHHHH
Confidence 58999999999999999999999999999999999999999999999999999999999999999999879999999999
Q ss_pred HHHHccc
Q psy15117 87 ILQKANA 93 (114)
Q Consensus 87 ~Lk~~~~ 93 (114)
.|.+.++
T Consensus 81 ~l~k~~~ 87 (89)
T cd08543 81 QMIKENQ 87 (89)
T ss_pred HHHHHHc
Confidence 9998765
No 3
>cd08534 SAM_PNT-GABP-alpha Sterile alpha motif (SAM)/Pointed domain of GA-binding protein alpha chain. SAM Pointed domain of GABP-alpha subfamily of ETS transcriptional regulators is a putative protein-protein interaction domain. This type of transcriptional regulators forms heterotetramers containing two alpha and two beta subunits. It interacts with GA repeats (purine rich repeats). GABP transcriptional factors control gene expression in cell cycle control, apoptosis, and cellular respiration. GABP participates in regulation of transmembrane receptors and key hormones especially in myeloid cells and at the neuromuscular junction.
Probab=100.00 E-value=1.1e-39 Score=223.11 Aligned_cols=86 Identities=41% Similarity=0.872 Sum_probs=82.7
Q ss_pred HHhHHHHHHhcCCCCCcCCCCHHHHHHHHHHHHHhcCCCCCCCCCCCCChHHhhcCChHHHhhhCCCCChHHHHHHHHHH
Q psy15117 9 FASWEKEQIRLNIVKDPRQWSESNVAQWLCWAIREFSLEGVTLHQFYMRGKDICSMGKESFLARAPPFMGDILWEHLEIL 88 (114)
Q Consensus 9 ~~~~~~e~~~l~iP~DP~~WS~~~V~~Wl~W~~~ef~L~~v~~~~F~m~G~~LC~Lt~edF~~~~p~~~GdiL~~hL~~L 88 (114)
-|+|+||++|++||.||..||++||.+||.|+++||+|+++++++|+|||++||.||+|||++++|.++|||||+||++|
T Consensus 3 ~~~~~keq~rl~IP~DP~~Wt~~~V~~WL~Wa~~ef~L~~v~~~~F~m~Gk~LC~Ls~edF~~r~p~~~GdiL~~hLe~L 82 (89)
T cd08534 3 DSNYRKEQERLKIPYDPMEWTEDQVLHWVVWAVKEFSLTDIDLSDWNITGRELCSLTQEEFFQRVPKDPGDIFWTHLELL 82 (89)
T ss_pred chhhHHHHHhcCCCCChHHcCHHHHHHHHHHHHHHcCCCCCChhhcCCCHHHHhcCCHHHHHHHcCCCccHHHHHHHHHH
Confidence 47999999999999999999999999999999999999999999999999999999999999999977999999999999
Q ss_pred HHcccc
Q psy15117 89 QKANAK 94 (114)
Q Consensus 89 k~~~~~ 94 (114)
|+++..
T Consensus 83 rk~~~~ 88 (89)
T cd08534 83 RKCKFV 88 (89)
T ss_pred HHcccc
Confidence 998653
No 4
>cd08541 SAM_PNT-FLI-1 Sterile alpha motif (SAM)/Pointed domain of friend leukemia integration 1 transcription activator. SAM Pointed domain of FLI-1 (Friend Leukemia Integration) subfamily of ETS transcriptional regulators is a putative protein-protein interaction domain. The FLI-1 protein participates in regulation of cellular differentiation, proliferation, and survival. The Fli-1 gene was initially described in Friend virus-induced erythroleukemias as a site for virus integration. It is highly expressed in hematopoietic tissues and at lower level in lungs, heart, and ovaries. Fli-1 is a proto-oncogene implicated in Ewing's sarcoma and erythroleukemia. Members of this subfamily are potential targets for cancer therapy.
Probab=100.00 E-value=9.7e-37 Score=209.32 Aligned_cols=83 Identities=33% Similarity=0.702 Sum_probs=79.8
Q ss_pred hHHHHHHhcCCCCCcCCCCHHHHHHHHHHHHHhcCCCCCCCCCC-CCChHHhhcCChHHHhhhCCCCChHHHHHHHHHHH
Q psy15117 11 SWEKEQIRLNIVKDPRQWSESNVAQWLCWAIREFSLEGVTLHQF-YMRGKDICSMGKESFLARAPPFMGDILWEHLEILQ 89 (114)
Q Consensus 11 ~~~~e~~~l~iP~DP~~WS~~~V~~Wl~W~~~ef~L~~v~~~~F-~m~G~~LC~Lt~edF~~~~p~~~GdiL~~hL~~Lk 89 (114)
++.++++||+||.||..||++||++||+|+++||+|+++++++| .|||++||.||++||++++|.++|||||+||++||
T Consensus 3 ~~~~~~~rl~IP~DP~~Wt~~hV~~WL~Wa~~ef~L~~vd~~~F~~m~Gk~LC~LskedF~~~~p~~~gdiLw~HL~~Lr 82 (91)
T cd08541 3 NMTTNERRVIVPADPTLWTQEHVRQWLEWAIKEYGLMEIDTSFFQNMDGKELCKMNKEDFLRATSLYNTEVLLSHLSYLR 82 (91)
T ss_pred CccccceeeeCCCChhhcCHHHHHHHHHHHHHHcCCCCCChhhccCCCHHHHHhCCHHHHHHHcCCCccHHHHHHHHHHH
Confidence 57899999999999999999999999999999999999999999 59999999999999999999999999999999999
Q ss_pred Hccc
Q psy15117 90 KANA 93 (114)
Q Consensus 90 ~~~~ 93 (114)
+++.
T Consensus 83 ~~~~ 86 (91)
T cd08541 83 ESSS 86 (91)
T ss_pred hCcc
Confidence 9863
No 5
>smart00251 SAM_PNT SAM / Pointed domain. A subfamily of the SAM domain
Probab=100.00 E-value=9e-36 Score=200.58 Aligned_cols=82 Identities=56% Similarity=1.048 Sum_probs=79.5
Q ss_pred HHhHHHHHHhcCCCCCcCCCCHHHHHHHHHHHHHhcCCCCCCCCCCCCChHHhhcCChHHHhhhCCCCChHHHHHHHHHH
Q psy15117 9 FASWEKEQIRLNIVKDPRQWSESNVAQWLCWAIREFSLEGVTLHQFYMRGKDICSMGKESFLARAPPFMGDILWEHLEIL 88 (114)
Q Consensus 9 ~~~~~~e~~~l~iP~DP~~WS~~~V~~Wl~W~~~ef~L~~v~~~~F~m~G~~LC~Lt~edF~~~~p~~~GdiL~~hL~~L 88 (114)
+++|+++++++.||.||..||++||.+||.|+++||+|+++++++|+|||++||.||++||++++| .+|||||+||++|
T Consensus 1 ~~~~~~~~~~~~ip~dP~~Wt~~~V~~Wl~w~~~ef~L~~~~~~~f~m~G~~Lc~ls~edF~~~~p-~~GdiL~~hL~~L 79 (82)
T smart00251 1 PPNFEKEQKRLGIPADPQLWTEDHVLEWLEWAVKEFSLSPIDFSKFDMSGKELCSMSKEEFLERAP-FGGDILWSHLQIL 79 (82)
T ss_pred CccHHHHHHHhCCCCChhhCCHHHHHHHHHHHHHhcCCCCCCcccCCCCHHHHHcCCHHHHHHHcC-CchHHHHHHHHHH
Confidence 478999999999999999999999999999999999999999999999999999999999999999 6999999999999
Q ss_pred HHc
Q psy15117 89 QKA 91 (114)
Q Consensus 89 k~~ 91 (114)
|++
T Consensus 80 k~~ 82 (82)
T smart00251 80 RKA 82 (82)
T ss_pred HhC
Confidence 974
No 6
>cd08532 SAM_PNT-PDEF-like Sterile alpha motif (SAM)/Pointed domain of prostate-derived ETS factor. SAM Pointed domain of PDEF-like (Prostate-Derived ETS Factor) subfamily of ETS transcriptional regulators is a putative protein-protein interaction domain. In human males this activator is highly expressed in the prostate gland and enhances androgen-mediated activation of the PSA promoter though interaction with the DNA binding domain of androgen receptor. PDEF may play a role in prostate cancer development as well as in goblet cell formation and mucus production in the epithelial lining of respiratory and intestinal tracts.
Probab=100.00 E-value=1.1e-35 Score=198.15 Aligned_cols=75 Identities=39% Similarity=0.722 Sum_probs=72.3
Q ss_pred HHhcCCCCCcCCCCHHHHHHHHHHHHHhcCCCCCCCCCCCCChHHhhcCChHHHhhhCCCCChHHHHHHHHHHHHcc
Q psy15117 16 QIRLNIVKDPRQWSESNVAQWLCWAIREFSLEGVTLHQFYMRGKDICSMGKESFLARAPPFMGDILWEHLEILQKAN 92 (114)
Q Consensus 16 ~~~l~iP~DP~~WS~~~V~~Wl~W~~~ef~L~~v~~~~F~m~G~~LC~Lt~edF~~~~p~~~GdiL~~hL~~Lk~~~ 92 (114)
|++|+||.||+.||++||.+||+|+++||+|++ ++++|+|||++||.||+|||++++|. +|||||+||++||++.
T Consensus 1 c~~L~ip~DP~~Ws~~~V~~WL~w~~~ef~L~~-~~~~F~mnG~~LC~ls~edF~~r~p~-~GdiL~~hL~~lk~a~ 75 (76)
T cd08532 1 CKLLGISPDPYQWSPANVQKWLLWTEHQYRLPP-PPRCFELNGKDLCALSEEDFRRRAPQ-GGDTLHAQLDIWKSAA 75 (76)
T ss_pred CCcCCCCCChhhcCHHHHHHHHHHHHHHhCCCC-chhcCCCCHHHHHcCCHHHHHHHcCC-chhHHHHHHHHHHHhh
Confidence 578999999999999999999999999999999 99999999999999999999999997 9999999999999864
No 7
>cd08540 SAM_PNT-ERG Sterile alpha motif (SAM)/Pointed domain of ERG transcription factor. SAM Pointed domain of ERG subfamily of ETS transcriptional regulators is a putative protein-protein interaction domain. It may participate in formation of homodimers or heterodimers with ETS-2, Fli-1, ER81, and Pu-1. However, dimeric forms are inactive and SAM Pointed domain is not essential for dimerization, since ER81 and Pu-1 do not have it. In mouse, a regulator of this type binds the ESET histone H3-specific methyltransferase (human homolog is SETDB1), followed by modification of local chromatin structure through histone methylation. ERG regulators are involved in endothelial cell differentiation, bone morphogenesis and neural crest development. The Erg gene is a proto-oncogene. It is a target of chromosomal translocations resulting in fusions with new neighboring genes. Chimeric proteins were found in solid tumors such as myeloid leukemia or Ewing's sarcoma. Members of this subfamily are po
Probab=100.00 E-value=5.3e-35 Score=194.47 Aligned_cols=72 Identities=38% Similarity=0.806 Sum_probs=70.0
Q ss_pred CCCCcCCCCHHHHHHHHHHHHHhcCCCCCCCCCC-CCChHHhhcCChHHHhhhCCCCChHHHHHHHHHHHHcc
Q psy15117 21 IVKDPRQWSESNVAQWLCWAIREFSLEGVTLHQF-YMRGKDICSMGKESFLARAPPFMGDILWEHLEILQKAN 92 (114)
Q Consensus 21 iP~DP~~WS~~~V~~Wl~W~~~ef~L~~v~~~~F-~m~G~~LC~Lt~edF~~~~p~~~GdiL~~hL~~Lk~~~ 92 (114)
||.||+.||++||.+||+|+++||+|+++++++| .|||++||.||++||++++|+++|||||+||++||+++
T Consensus 1 iP~DP~~Wt~~~V~~WL~Wa~~ef~L~~~~~~~F~~m~Gk~LC~LskedF~~~ap~~~GdiL~~HL~~Lr~~~ 73 (75)
T cd08540 1 VPADPTLWSTDHVRQWLEWAVKEYGLPDVDVLLFQNIDGKELCKMTKDDFQRLTPSYNADILLSHLHYLRETP 73 (75)
T ss_pred CCCChhhcCHHHHHHHHHHHHHHhCCCCCCcccccCCCHHHHHhCCHHHHHHHcCCCCchHHHHHHHHHHhCC
Confidence 7999999999999999999999999999999999 59999999999999999999889999999999999985
No 8
>cd08533 SAM_PNT-ETS-1,2 Sterile alpha motif (SAM)/Pointed domain of ETS-1,2 family. SAM Pointed domain of ETS-1,2 family of transcriptional activators is a protein-protein interaction domain. It carries a kinase docking site and mediates interaction between ETS transcriptional activators and protein kinases. This group of transcriptional factors is involved in the Ras/MAP kinase signaling pathway. MAP kinases phosphorylate the transcription factors. Phosphorylated factors then recruit coactivators and enhance transactivation. Members of this group play a role in regulation of different embryonic developmental processes. ETS-1,2 transcriptional activators are proto-oncogenes involved in malignant transformation and tumor progression. They are potential molecular targets for selective cancer therapy.
Probab=100.00 E-value=8.7e-35 Score=191.69 Aligned_cols=70 Identities=64% Similarity=1.255 Sum_probs=68.5
Q ss_pred CCCcCCCCHHHHHHHHHHHHHhcCCCCCCCCCCCCChHHhhcCChHHHhhhCCCCChHHHHHHHHHHHHc
Q psy15117 22 VKDPRQWSESNVAQWLCWAIREFSLEGVTLHQFYMRGKDICSMGKESFLARAPPFMGDILWEHLEILQKA 91 (114)
Q Consensus 22 P~DP~~WS~~~V~~Wl~W~~~ef~L~~v~~~~F~m~G~~LC~Lt~edF~~~~p~~~GdiL~~hL~~Lk~~ 91 (114)
|.||..||++||.+||.|+++||+|+++++++|+|||++||.||++||++++|+++|||||+||++||+.
T Consensus 1 P~DP~~Wt~~~V~~WL~Wa~~ef~L~~v~~~~F~m~Gk~LC~ls~edF~~~~p~~~GdIL~~hL~~L~k~ 70 (71)
T cd08533 1 PKDPRLWTETHVRQWLLWAVNEFSLEGVNFQKFCMSGRDLCALGKERFLELAPDFVGDILWEHLEILQKE 70 (71)
T ss_pred CcChhhCCHHHHHHHHHHHHHHcCCCCCCcccCCCCHHHHHcCCHHHHHHHcCCCcchHHHHHHHHHHhc
Confidence 8999999999999999999999999999999999999999999999999999988999999999999985
No 9
>cd08531 SAM_PNT-ERG_FLI-1 Sterile alpha motif (SAM)/Pointed domain of ERG (Ets related gene) and FLI-1 (Friend leukemia integration 1) transcription factors. SAM Pointed domain of ERG/FLI-1 subfamily of ETS transcriptional regulators is a putative protein-protein interaction domain. The ERG and FLI regulators are involved in endothelial cell differentiation, bone morphogenesis and neural crest development. They are proto-oncogenes implicated in cancer development such as myeloid leukemia, Ewing's sarcoma and erythroleukemia. Members of this subfamily are potential targets for cancer therapy.
Probab=100.00 E-value=9.1e-35 Score=193.28 Aligned_cols=72 Identities=36% Similarity=0.829 Sum_probs=70.1
Q ss_pred CCCCcCCCCHHHHHHHHHHHHHhcCCCCCCCCCC-CCChHHhhcCChHHHhhhCCCCChHHHHHHHHHHHHcc
Q psy15117 21 IVKDPRQWSESNVAQWLCWAIREFSLEGVTLHQF-YMRGKDICSMGKESFLARAPPFMGDILWEHLEILQKAN 92 (114)
Q Consensus 21 iP~DP~~WS~~~V~~Wl~W~~~ef~L~~v~~~~F-~m~G~~LC~Lt~edF~~~~p~~~GdiL~~hL~~Lk~~~ 92 (114)
||.||..||++||.+||.|+++||+|+++++++| +|||++||.||++||++++|+++|||||+||++||+++
T Consensus 1 vP~DP~~Wt~~~V~~WL~Wa~~ef~L~~i~~~~F~~m~Gk~LC~lt~edF~~~~~~~~GdiL~~hL~~Lr~~~ 73 (75)
T cd08531 1 VPADPTLWTREHVRQWLEWAVKEYGLQDVDVSRFQNIDGKELCKMTKEDFLRLTSAYNADVLLSHLSYLRESP 73 (75)
T ss_pred CCCChhhcCHHHHHHHHHHHHHHcCCCCCChhhccCCChHHHHcCCHHHHHHHcCCCcchHHHHHHHHHHhCC
Confidence 7999999999999999999999999999999999 99999999999999999999889999999999999975
No 10
>PF02198 SAM_PNT: Sterile alpha motif (SAM)/Pointed domain; InterPro: IPR003118 Transcription factors are protein molecules that bind to specific DNA sequences in the genome, resulting in the induction or inhibition of gene transcription []. The ets oncogene is such a factor, possessing a region of 85-90 amino acids known as the ETS (erythroblast transformation specific) domain [, ]. This domain is rich in positively-charged and aromatic residues, and binds to purine-rich segments of DNA. The ETS domain IPR000418 from INTERPRO has been identified in other transcription factors such as PU.1, human erg, human elf-1, human elk-1, GA binding protein, and a number of others [, , ]. It is generally localized at the C terminus of the protein, with the exception of ELF-1, ELK-1, ELK-3, ELK-4 and ERF where it is found at the N terminus. This entry describes the highly conserved PNT (or Pointed) domain which is found within a subset of the ETs domain (IPR000418 from INTERPRO ), including mammalian Ets-1, Ets-2, Erg, Fli-1, GABPalpha, and Tel, as well as Drosophila Pnt-P2 and Yan. The PNT domain (IPR001660 from INTERPRO ) through a common tertiary arrangement of four alpha-helices. A role in protein-protein association has been established for the PNT domain [, ].; GO: 0043565 sequence-specific DNA binding, 0005634 nucleus; PDB: 1SXE_A 1SXD_A 2KMD_A 2JV3_A 2E8P_A 1SV4_B 1SV0_B 1LKY_F 1JI7_B 2DKX_A ....
Probab=100.00 E-value=1.6e-33 Score=189.21 Aligned_cols=83 Identities=43% Similarity=0.878 Sum_probs=75.5
Q ss_pred HhHHHHHHhcCCCCCcCCCCHHHHHHHHHHHHHhcCCCCCCCCCCCCChHHhhcCChHHHhhhCCCCChHHHHHHHHHHH
Q psy15117 10 ASWEKEQIRLNIVKDPRQWSESNVAQWLCWAIREFSLEGVTLHQFYMRGKDICSMGKESFLARAPPFMGDILWEHLEILQ 89 (114)
Q Consensus 10 ~~~~~e~~~l~iP~DP~~WS~~~V~~Wl~W~~~ef~L~~v~~~~F~m~G~~LC~Lt~edF~~~~p~~~GdiL~~hL~~Lk 89 (114)
++|+++++++.||.||..||++||.+||.|++++|+|+++++++|+|||++||.||++||.+++|...||+||+||++||
T Consensus 2 ~~~~~~~~~~~~p~DP~~Wt~~~V~~Wl~w~~~~f~l~~~~~~~f~~~G~~Lc~lt~e~F~~~~~~~~G~~Ly~~L~~Lk 81 (84)
T PF02198_consen 2 SDFRKECKRLWLPKDPRLWTKEDVLQWLRWVVREFDLPAIDFSRFNMNGRELCSLTKEDFRRRFPSGYGDILYSHLQLLK 81 (84)
T ss_dssp HHHHHHHCTTTSCSSGGG--HHHHHHHHHHHHHHTT-SSCHGGGGTS-HHHHHHSHHHHHHHHSTHTTHHHHHHHHHHHH
T ss_pred ccHHHHHHHhCCCCChhhCCHHHHHHHHHHHHHhcCCCcCchhccCCCHHHHHHcCHHHHHHHcCCCcHHHHHHHHHHHH
Confidence 68999999999999999999999999999999999999999999999999999999999999999558999999999999
Q ss_pred Hcc
Q psy15117 90 KAN 92 (114)
Q Consensus 90 ~~~ 92 (114)
+++
T Consensus 82 ~~~ 84 (84)
T PF02198_consen 82 KCC 84 (84)
T ss_dssp HH-
T ss_pred Hcc
Confidence 864
No 11
>cd08535 SAM_PNT-Tel_Yan Sterile alpha motif (SAM)/Pointed domain of Tel/Yan protein. SAM Pointed domain of Tel (Translocation, Ets, Leukemia)/Yan subfamily of ETS transcriptional repressors is a protein-protein interaction domain. SAM Pointed domains of this type of regulators can interact with each other, forming head-to-tail homodimers or homooligomers, and/or interact with SAM Pointed domains of another subfamily of ETS factors forming heterodimers. The oligomeric form is able to block transcription of target genesand is involved in MAPK signaling. They participate in regulation of different processes during embryo development including hematopoietic differentiation and eye development. Tel/Yan transcriptional factors are frequent targets of chromosomal translocations resulting in fusions of SAM domain with new neighboring genes. Such chimeric proteins were found in different tumors. Members of this subfamily are potential targets for cancer therapy.
Probab=99.98 E-value=1.3e-32 Score=179.96 Aligned_cols=67 Identities=46% Similarity=0.837 Sum_probs=65.2
Q ss_pred CCcCCCCHHHHHHHHHHHHHhcCCCCCCCCCCCCChHHhhcCChHHHhhhCCCCChHHHHHHHHHHHH
Q psy15117 23 KDPRQWSESNVAQWLCWAIREFSLEGVTLHQFYMRGKDICSMGKESFLARAPPFMGDILWEHLEILQK 90 (114)
Q Consensus 23 ~DP~~WS~~~V~~Wl~W~~~ef~L~~v~~~~F~m~G~~LC~Lt~edF~~~~p~~~GdiL~~hL~~Lk~ 90 (114)
.||+.||++||.+||+|+++||+|+++++++|+|||++||.||+|||++++| ++|||||+||++||+
T Consensus 1 ~DP~~Wt~~~V~~WL~wa~~ef~L~~i~~~~F~mnGk~LC~ls~edF~~r~p-~~GdiL~~hL~~L~~ 67 (68)
T cd08535 1 LQPRYWSRDDVLQWLRWAENEFSLPPIDSNTFEMNGKALCLLTKEDFRYRSP-HSGDVLYELLQHLLK 67 (68)
T ss_pred CChhhCCHHHHHHHHHHHHHhcCCCCCChhccCCCHHHHhcCCHHHHhhhCC-CchHHHHHHHHHHHh
Confidence 4999999999999999999999999999999999999999999999999999 599999999999997
No 12
>cd08203 SAM_PNT Sterile alpha motif (SAM)/Pointed domain. Sterile alpha motif (SAM)/Pointed domain is found in about 40% of transcriptional regulators of ETS family (initially named for Erythroblastosis virus, E26-E Twenty Six). SAM Pointed domain containing proteins of this family additionally have C-terminal ETS DNA-binding domain. In a few cases, SAM Pointed domain appears as a single domain protein. Members of this group are mostly involved in regulation of embryonic development and growth control in eukaryotes. SAM Pointed domains mediate protein-protein interactions. Depending on the subgroup, they can interact with other SAM Pointed domains forming homo or hetero dimers/oligomers and/or they can recruit a protein kinase to its target which can be the SAM Pointed domain containing protein itself or another protein that has no kinase docking site. Thus, SAM Pointed domains participate in transcriptional regulation and signal transduction. Some genes coding ETS family transcripti
Probab=99.97 E-value=9.5e-31 Score=169.57 Aligned_cols=66 Identities=53% Similarity=1.077 Sum_probs=64.3
Q ss_pred CcCCCCHHHHHHHHHHHHHhcCCCCCCCCCCCCChHHhhcCChHHHhhhCCCCChHHHHHHHHHHHH
Q psy15117 24 DPRQWSESNVAQWLCWAIREFSLEGVTLHQFYMRGKDICSMGKESFLARAPPFMGDILWEHLEILQK 90 (114)
Q Consensus 24 DP~~WS~~~V~~Wl~W~~~ef~L~~v~~~~F~m~G~~LC~Lt~edF~~~~p~~~GdiL~~hL~~Lk~ 90 (114)
||..||++||.+||.|+++||+|+.+++++|+|||++||.||++||.+++|. +|||||+||++||+
T Consensus 1 dP~~Wt~~~V~~Wl~w~~~~f~L~~~~~~~F~m~G~~Lc~ls~edF~~~~p~-~GdiL~~hL~~l~~ 66 (66)
T cd08203 1 DPRLWTKEHVLQWLEWAVKEFSLPPIDFSKFNMNGKELCLLTKEDFLRRAPS-GGDILYEHLQLLRK 66 (66)
T ss_pred ChhhCCHHHHHHHHHHHHHhcCCCCCChhhcCCCHHHHHhCCHHHHHHHcCC-cHHHHHHHHHHHhC
Confidence 8999999999999999999999999999999999999999999999999997 99999999999984
No 13
>cd08536 SAM_PNT-Mae Sterile alpha motif (SAM)/Pointed domain of Mae protein homolog. Mae (Modulator of the Activity of ETS) subfamily represents a group of SAM Pointed monodomain proteins. SAM Pointed domain is a protein-protein interaction domain. It can interact with other SAM pointed domains forming head-to-tail heterodimers and also provides a kinase docking site. For example, in Drosophila Mae is required for facilitating phosphorylation of the Yan factor and for blocking phosphorylation of the ETS-2 regulator. Mae interacts with the SAM Pointed domains of Yan and ETS-2. Binding enhances access of the kinase to the Yan phosphorylation site by providing a kinase docking site, or inhibits phosphorylation of ETS-2 by blocking its docking site. This type of factors participates in regulation of kinase signaling particularly during embryogenesis.
Probab=99.96 E-value=3e-30 Score=167.84 Aligned_cols=64 Identities=42% Similarity=0.847 Sum_probs=62.2
Q ss_pred CcCCCCHHHHHHHHHHHHHhcCCCCCCCCCCCCChHHhhcCChHHHhhhCCCCChHHHHHHHHHH
Q psy15117 24 DPRQWSESNVAQWLCWAIREFSLEGVTLHQFYMRGKDICSMGKESFLARAPPFMGDILWEHLEIL 88 (114)
Q Consensus 24 DP~~WS~~~V~~Wl~W~~~ef~L~~v~~~~F~m~G~~LC~Lt~edF~~~~p~~~GdiL~~hL~~L 88 (114)
||+.||++||.+||.|+++||+|+++++++|+|||++||.||++||++|+|. +|||||+||+.-
T Consensus 1 DP~~Ws~~~V~~WL~w~~~ef~L~~~~~~~F~m~Gk~LC~ls~edF~~r~P~-~GdiL~~~lq~~ 64 (66)
T cd08536 1 DPRSWSREHVRTWLRWVSARYQLEVVDLDKFLMNGKGLCLMSLEGFLYRVPV-GGKLLYEDFQRR 64 (66)
T ss_pred CcccCCHHHHHHHHHHHHHHhCCCCCCccccCCCHHHHHcCCHHHHHhhcCC-ccHHHHHHHHHH
Confidence 8999999999999999999999999999999999999999999999999997 999999999863
No 14
>cd08538 SAM_PNT-ESE-2-like Sterile alpha motif (SAM)/Pointed domain of ESE-2 like ETS transcriptional regulators. SAM Pointed domain of ESE-2-like (Epithelium-Specific ETS) subfamily of ETS transcriptional regulators is a putative protein-protein interaction domain. It can act as a major transactivator by providing a potential docking site for co-activators. ESE-2 factors are involved in regulation of gene expression in a variety of epithelial (glandular and secretory) cells. ESE-2 mRNA was found in skin keratinocytes, salivary gland, mammary gland, stomach, prostate, and kidneys. The DNA binding consensus motif for ESE-2 consists of a GGA core and AT-rich flanks. The expression profiles of these factors are altered in epithelial cancers. Members of this subfamily are potential targets for cancer therapy.
Probab=99.96 E-value=5.2e-30 Score=171.68 Aligned_cols=72 Identities=24% Similarity=0.571 Sum_probs=68.0
Q ss_pred CCCcCCCCHHHHHHHHHHHHHhcCCCC--CCCCCCCCChHHhhcCChHHHhhhCCCCChHHHHHHHHHHHHcccc
Q psy15117 22 VKDPRQWSESNVAQWLCWAIREFSLEG--VTLHQFYMRGKDICSMGKESFLARAPPFMGDILWEHLEILQKANAK 94 (114)
Q Consensus 22 P~DP~~WS~~~V~~Wl~W~~~ef~L~~--v~~~~F~m~G~~LC~Lt~edF~~~~p~~~GdiL~~hL~~Lk~~~~~ 94 (114)
-.||..||++||.+||.|+++||+|++ +++++|.|||++||+||+|||++++|+ +||+||++|+.+|..+.+
T Consensus 4 ~~dP~~Ws~~~V~~WL~Wav~ef~L~~~~i~~~~f~m~Gk~LC~ms~eeF~~~~p~-~GdvLy~~lq~~~~~~~~ 77 (78)
T cd08538 4 SVHPEYWTKRHVWEWLQFCCDQYKLDANCISFCHFNISGLQLCSMTQEEFIEAAGI-CGEYLYFILQNIRTQGYS 77 (78)
T ss_pred CCCccccCHHHHHHHHHHHHHHcCCCccccchhhcCCCHHHHHcCCHHHHHHHccc-chHHHHHHHHHHHhcCcc
Confidence 479999999999999999999999976 799999999999999999999999996 999999999999988764
No 15
>cd08757 SAM_PNT_ESE Sterile alpha motif (SAM)/Pointed domain of ESE-like ETS transcriptional regulators. SAM Pointed domain of ESE-like (Epithelium-Specific ETS) subfamily of ETS transcriptional regulators is a putative protein-protein interaction domain. It can act as a major transactivator by providing a potential docking site for co-activators. ETS factors are important for cell differentiation. They can be involved in regulation of gene expression in different types of epithelial cells. They are expressed in salivary gland, intestine, stomach, pancreas, lungs, kidneys, colon, mammary gland, and prostate. Members of this group are proto-oncogenes. Expression profiles of these factors are altered in epithelial cancers, which makes them potential targets for cancer therapy.
Probab=99.96 E-value=3e-29 Score=163.63 Aligned_cols=65 Identities=28% Similarity=0.705 Sum_probs=62.0
Q ss_pred CcCCCCHHHHHHHHHHHHHhcCCCC--CCCCCCCCChHHhhcCChHHHhhhCCCCChHHHHHHHHHHH
Q psy15117 24 DPRQWSESNVAQWLCWAIREFSLEG--VTLHQFYMRGKDICSMGKESFLARAPPFMGDILWEHLEILQ 89 (114)
Q Consensus 24 DP~~WS~~~V~~Wl~W~~~ef~L~~--v~~~~F~m~G~~LC~Lt~edF~~~~p~~~GdiL~~hL~~Lk 89 (114)
||..||++||.+||.|++++|+|+. +++++|+|||++||.||++||++++|+ +|||||+||+.++
T Consensus 1 dP~~Wt~~~V~~Wl~w~~~e~~l~~~~i~~~~F~m~Gk~LC~ms~edF~~~~p~-~GdiL~~~l~~~~ 67 (68)
T cd08757 1 HPQYWTKNDVLEWLQFVAEQNKLDAECISFQKFNIDGQTLCSMTEEEFREAAGS-YGSLLYAELQRLT 67 (68)
T ss_pred CHhhCCHHHHHHHHHHHHHHcCCCCCcCCccccCCCHHHHHcCCHHHHHHHcCC-cHHHHHHHHHHHh
Confidence 8999999999999999999999874 789999999999999999999999997 9999999999886
No 16
>cd08539 SAM_PNT-ESE-3-like Sterile alpha motif (SAM)/Pointed domain of ESE-3 like ETS transcriptional regulators. SAM Pointed domain of ESE-3-like (Epithelium-Specific ETS) subfamily of ETS transcriptional regulators is a putative protein-protein interaction domain. It can act as a major transactivator by providing a potential docking site for co-activators. The ESE-3 transcriptional activator is involved in regulation of glandular epithelium differentiation through the MAP kinase signaling cascade. It is found to be expressed in glandular epithelium of prostate, pancreas, salivary gland, and trachea. Additionally, ESE-3 is differentially expressed during monocyte-derived dendritic cells development. DNA binding consensus motif for ESE-3 consists of purine-rich GGAA/T core sequence. The expression profiles of these factors are altered in epithelial cancers. Members of this subfamily are potential targets for cancer therapy.
Probab=99.95 E-value=6.5e-28 Score=160.05 Aligned_cols=70 Identities=23% Similarity=0.514 Sum_probs=64.1
Q ss_pred CCCcCCCCHHHHHHHHHHH--HHhcCCCCCCCCCCCCChHHhhcCChHHHhhhCCCCChHHHHHHHHHHHHcc
Q psy15117 22 VKDPRQWSESNVAQWLCWA--IREFSLEGVTLHQFYMRGKDICSMGKESFLARAPPFMGDILWEHLEILQKAN 92 (114)
Q Consensus 22 P~DP~~WS~~~V~~Wl~W~--~~ef~L~~v~~~~F~m~G~~LC~Lt~edF~~~~p~~~GdiL~~hL~~Lk~~~ 92 (114)
..||+.||+.||.+||+|+ .++|++.++++++|.|||++||.|++|+|+.++| ++|||||+||+.||.++
T Consensus 2 ~~~P~~Wtk~~V~~WL~~~~~~~~~~~~~i~~~~F~MnG~~LC~ms~e~F~~~~p-~~GdiLy~~l~~~~~~~ 73 (74)
T cd08539 2 EIHPQYWTKYQVWEWLQHLLDTNQLDASCIPFQEFDINGEHLCSMSLQEFTRAAG-TAGQLLYSNLQHLKWNG 73 (74)
T ss_pred CCChhhCCHHHHHHHHHHHHHHcCCCcccccHHHcCCChHHHHccCHHHHhhcCC-chHHHHHHHHHHHhcCC
Confidence 4699999999999999999 5667777889999999999999999999998888 59999999999999875
No 17
>cd08537 SAM_PNT-ESE-1-like Sterile alpha motif (SAM)/Pointed domain of ESE-1 like ETS transcriptional regulators. SAM Pointed domain of ESE-1-like (Epithelium-Specific ETS) subfamily of ETS transcriptional regulators is a putative protein-protein interaction domain. SAM Pointed domain of ESE-1 provides a potential docking site for signaling kinase Pak1 in humans. ESE-1 factors are involved in regulation of gene expression in different types of epithelial cells. ESE-1 is expressed in many different organs including intestine, stomach, pancreas, lungs, kidneys, and prostate. The DNA binding consensus motif for ESE-1 consists of a purine-rich GGA[AT] core sequence. The expression profile of these factors is altered in epithelial cancers if compared to normal tissues. Members of this subfamily are potential targets for cancer therapy.
Probab=99.95 E-value=7.5e-28 Score=160.97 Aligned_cols=69 Identities=19% Similarity=0.566 Sum_probs=66.1
Q ss_pred CCCcCCCCHHHHHHHHHHHH--HhcCCCCCCCCCCCCChHHhhcCChHHHhhhCCCCChHHHHHHHHHHHHc
Q psy15117 22 VKDPRQWSESNVAQWLCWAI--REFSLEGVTLHQFYMRGKDICSMGKESFLARAPPFMGDILWEHLEILQKA 91 (114)
Q Consensus 22 P~DP~~WS~~~V~~Wl~W~~--~ef~L~~v~~~~F~m~G~~LC~Lt~edF~~~~p~~~GdiL~~hL~~Lk~~ 91 (114)
-.||+.||+.||.+||+|++ +||+|.+|++++|.|||++||.|++|+|+.++|+ +|||||+||+.|+..
T Consensus 7 ~~~Pq~Wtk~qVleWL~~~~e~n~~dl~~v~f~~F~MnG~~LC~l~~e~F~~~a~p-~GdiLy~~L~~l~~~ 77 (78)
T cd08537 7 GEEPQFWTKTQVLEWISYHVEKNKYDASSIDFSRCDMDGATLCNCALDQMRLVFGP-LGDQLYAQLRELTSS 77 (78)
T ss_pred CCCcccccHHHHHHHHHHHHHhccCCcccCCHHHhCCchHHHHccCHHHHHHHcCC-hHHHHHHHHHHHhcc
Confidence 57999999999999999999 7799999999999999999999999999999998 999999999999864
No 18
>KOG3804|consensus
Probab=99.41 E-value=1.8e-13 Score=114.10 Aligned_cols=74 Identities=31% Similarity=0.670 Sum_probs=69.3
Q ss_pred CCCCCcCCCCHHHHHHHHHHHHHhcCCC--CCCCCCCCCChHHhhcCChHHHhhhCCCCChHHHHHHHHHHHHcccc
Q psy15117 20 NIVKDPRQWSESNVAQWLCWAIREFSLE--GVTLHQFYMRGKDICSMGKESFLARAPPFMGDILWEHLEILQKANAK 94 (114)
Q Consensus 20 ~iP~DP~~WS~~~V~~Wl~W~~~ef~L~--~v~~~~F~m~G~~LC~Lt~edF~~~~p~~~GdiL~~hL~~Lk~~~~~ 94 (114)
-+..+|..|++++|.+|+.|+.++|+|+ .+++..|.|+|.+||.+|++||+.++|. .||+||++|+.++.....
T Consensus 57 ~l~~~p~~W~rd~v~~~l~~~~~~~sl~~~~~~~~~f~m~g~~L~~~te~d~~~r~~~-~gd~l~~~lq~~~~~~~~ 132 (390)
T KOG3804|consen 57 TLSVEPSLWSRDDVLEWLSFAEAEFSLPANCIAFPRFDINGNALCSSTEEDFRVRAGT-LGDVLYNSLQEKKEQSED 132 (390)
T ss_pred ccccCcccccccchhHHHHHHHHhccCCcccccccccCCCcchhccccHHHhhhcCCC-ccchhhhhhhhhhccccc
Confidence 4889999999999999999999999999 7888999999999999999999999996 899999999999986543
No 19
>KOG3805|consensus
Probab=97.50 E-value=1.9e-05 Score=65.07 Aligned_cols=70 Identities=19% Similarity=0.152 Sum_probs=63.0
Q ss_pred cCCCCCcCCCCHHHHHHHHHHHHHhcCCCCCCCCCCCCChHHhhcCC----hHHHhhhCCCCChHHHHHHHHHHHH
Q psy15117 19 LNIVKDPRQWSESNVAQWLCWAIREFSLEGVTLHQFYMRGKDICSMG----KESFLARAPPFMGDILWEHLEILQK 90 (114)
Q Consensus 19 l~iP~DP~~WS~~~V~~Wl~W~~~ef~L~~v~~~~F~m~G~~LC~Lt----~edF~~~~p~~~GdiL~~hL~~Lk~ 90 (114)
...+.||. |++.||..|+.|+.-+|-++++-.+...+.+++.|.+. .+.|.++.| .+|++|.+++..++.
T Consensus 150 gqs~~D~~-ws~~~v~~~~~~T~~Q~~~PP~~vq~~~~~~~E~~~~~~t~~hp~f~~~~~-y~G~vLpa~~~i~~s 223 (361)
T KOG3805|consen 150 GQSFEDHY-WSPFEVQAQLSTTELQSYLPPQLVQLYRLYLAENNHRLDTPMHPVFGNRSP-YGGTVLPAELPIYKS 223 (361)
T ss_pred cccccccc-cCHHHHHHHHhhhhhhhcCCcHHHHHHHHHHHHhccccccccchhhccCCC-CCCcccccccccchh
Confidence 45788888 99999999999999999999877677788889999888 899999999 699999999999984
No 20
>PF00536 SAM_1: SAM domain (Sterile alpha motif); InterPro: IPR021129 The sterile alpha motif (SAM) domain is a putative protein interaction module present in a wide variety of proteins [] involved in many biological processes. The SAM domain that spreads over around 70 residues is found in diverse eukaryotic organisms []. SAM domains have been shown to homo- and hetero-oligomerise, forming multiple self-association architectures and also binding to various non-SAM domain-containing proteins [], nevertheless with a low affinity constant []. SAM domains also appear to possess the ability to bind RNA []. Smaug, a protein that helps to establish a morphogen gradient in Drosophila embryos by repressing the translation of nanos (nos) mRNA, binds to the 3' untranslated region (UTR) of nos mRNA via two similar hairpin structures. The 3D crystal structure of the Smaug RNA-binding region shows a cluster of positively charged residues on the Smaug-SAM domain, which could be the RNA-binding surface. This electropositive potential is unique among all previously determined SAM-domain structures and is conserved among Smaug-SAM homologs. These results suggest that the SAM domain might have a primary role in RNA binding. Structural analyses show that the SAM domain is arranged in a small five-helix bundle with two large interfaces []. In the case of the SAM domain of EphB2, each of these interfaces is able to form dimers. The presence of these two distinct intermonomers binding surface suggest that SAM could form extended polymeric structures []. This entry represents type 1 SAM domains. ; PDB: 2KIV_A 3HIL_B 3KKA_A 3K1R_B 3SEN_B 3SEI_B 1V85_A 2KE7_A 2EAM_A 1WWV_A ....
Probab=96.09 E-value=0.0061 Score=37.68 Aligned_cols=59 Identities=24% Similarity=0.499 Sum_probs=39.8
Q ss_pred CCCHHHHHHHHHHHHHhcCCCCC--CCCCCCCChHHhhcCChHHHhhhCCCCChH--HHHHHHHHHH
Q psy15117 27 QWSESNVAQWLCWAIREFSLEGV--TLHQFYMRGKDICSMGKESFLARAPPFMGD--ILWEHLEILQ 89 (114)
Q Consensus 27 ~WS~~~V~~Wl~W~~~ef~L~~v--~~~~F~m~G~~LC~Lt~edF~~~~p~~~Gd--iL~~hL~~Lk 89 (114)
.|+.++|.+||.- ..|+.. .+..=.++|..|+.||.+|+...--...|+ .|...++.||
T Consensus 2 ~W~~~~V~~WL~~----~~l~~y~~~F~~~~i~g~~L~~lt~~dL~~lgi~~~ghr~ki~~~i~~Lk 64 (64)
T PF00536_consen 2 EWSVEDVSEWLKS----LGLEQYAENFEKNYIDGEDLLSLTEEDLEELGITKLGHRKKILRAIQKLK 64 (64)
T ss_dssp GTSHHHHHHHHHH----TTGGGGHHHHHHTTSSHHHHTTSCHHHHHHTT-SSHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHH----CCCHHHHHHHHcCCchHHHHHhcCHHHHHHcCCCCHHHHHHHHHHHHHhC
Confidence 6999999999973 344332 122236899999999999998854322363 4566666554
No 21
>PF07647 SAM_2: SAM domain (Sterile alpha motif); InterPro: IPR011510 The sterile alpha motif (SAM) domain is a putative protein interaction module present in a wide variety of proteins [] involved in many biological processes. The SAM domain that spreads over around 70 residues is found in diverse eukaryotic organisms []. SAM domains have been shown to homo- and hetero-oligomerise, forming multiple self-association architectures and also binding to various non-SAM domain-containing proteins [], nevertheless with a low affinity constant []. SAM domains also appear to possess the ability to bind RNA []. Smaug, a protein that helps to establish a morphogen gradient in Drosophila embryos by repressing the translation of nanos (nos) mRNA, binds to the 3' untranslated region (UTR) of nos mRNA via two similar hairpin structures. The 3D crystal structure of the Smaug RNA-binding region shows a cluster of positively charged residues on the Smaug-SAM domain, which could be the RNA-binding surface. This electropositive potential is unique among all previously determined SAM-domain structures and is conserved among Smaug-SAM homologs. These results suggest that the SAM domain might have a primary role in RNA binding. Structural analyses show that the SAM domain is arranged in a small five-helix bundle with two large interfaces []. In the case of the SAM domain of EphB2, each of these interfaces is able to form dimers. The presence of these two distinct intermonomers binding surface suggest that SAM could form extended polymeric structures []. This entry represents a second domain related to the SAM domain. ; GO: 0005515 protein binding; PDB: 1B0X_A 1X9X_B 1OW5_A 1V38_A 3BS7_A 3BS5_A 3TAD_A 3TAC_B 2K60_A 2DL0_A ....
Probab=96.04 E-value=0.005 Score=38.21 Aligned_cols=60 Identities=23% Similarity=0.392 Sum_probs=40.3
Q ss_pred cCCCCHHHHHHHHHHHHHhcCCCCC--CCCCCCCCh-HHhhcCChHHHhhhCCCCChH--HHHHHHHHH
Q psy15117 25 PRQWSESNVAQWLCWAIREFSLEGV--TLHQFYMRG-KDICSMGKESFLARAPPFMGD--ILWEHLEIL 88 (114)
Q Consensus 25 P~~WS~~~V~~Wl~W~~~ef~L~~v--~~~~F~m~G-~~LC~Lt~edF~~~~p~~~Gd--iL~~hL~~L 88 (114)
|..||.++|.+||.-. +++.. .+....++| ..|-.||.+++...--...|+ .|...++.|
T Consensus 1 v~~w~~~~v~~WL~~~----gl~~y~~~f~~~~i~g~~~L~~l~~~~L~~lGI~~~~~r~kll~~i~~L 65 (66)
T PF07647_consen 1 VSTWSPEDVAEWLKSL----GLEQYADNFRENGIDGLEDLLQLTEEDLKELGITNLGHRRKLLSAIQEL 65 (66)
T ss_dssp GGGHCHHHHHHHHHHT----TCGGGHHHHHHTTCSHHHHHTTSCHHHHHHTTTTHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHC----CcHHHHHHHHHcCCcHHHHHhhCCHHHHHHcCCCCHHHHHHHHHHHHHc
Confidence 4689999999999822 44332 245668999 999999999997443222342 345555444
No 22
>cd00166 SAM Sterile alpha motif.; Widespread domain in signalling and nuclear proteins. In EPH-related tyrosine kinases, appears to mediate cell-cell initiated signal transduction via the binding of SH2-containing proteins to a conserved tyrosine that is phosphorylated. In many cases mediates homodimerization.
Probab=95.02 E-value=0.016 Score=34.80 Aligned_cols=48 Identities=21% Similarity=0.394 Sum_probs=33.6
Q ss_pred CCCHHHHHHHHHHHHHhcCCCCC--CCCCCCCChHHhhcCChHHHhhhCCCCCh
Q psy15117 27 QWSESNVAQWLCWAIREFSLEGV--TLHQFYMRGKDICSMGKESFLARAPPFMG 78 (114)
Q Consensus 27 ~WS~~~V~~Wl~W~~~ef~L~~v--~~~~F~m~G~~LC~Lt~edF~~~~p~~~G 78 (114)
.|+.++|.+||. +.+++.. .+....++|..|+.|+.+|+....-...|
T Consensus 1 ~w~~~~V~~wL~----~~~~~~y~~~f~~~~i~g~~L~~l~~~dL~~lgi~~~g 50 (63)
T cd00166 1 NWSPEDVAEWLE----SLGLGQYADNFRENGIDGDLLLLLTEEDLKELGITLPG 50 (63)
T ss_pred CCCHHHHHHHHH----HcChHHHHHHHHHcCCCHHHHhHCCHHHHHHcCCCCHH
Confidence 599999999996 3344322 23344679999999999999855433235
No 23
>KOG4375|consensus
Probab=93.66 E-value=0.029 Score=45.36 Aligned_cols=50 Identities=24% Similarity=0.446 Sum_probs=39.0
Q ss_pred CCCCHHHHHHHHHHHH-HhcCCCCCCCCCCCCChHHhhcCChHHHhhhCCCCCh
Q psy15117 26 RQWSESNVAQWLCWAI-REFSLEGVTLHQFYMRGKDICSMGKESFLARAPPFMG 78 (114)
Q Consensus 26 ~~WS~~~V~~Wl~W~~-~ef~L~~v~~~~F~m~G~~LC~Lt~edF~~~~p~~~G 78 (114)
..||+.||..||.|.- .||.= -+..-.|||+-|=.++++||+.+-..+.|
T Consensus 208 ~~Wsk~DV~dWLssl~L~E~~~---aF~d~eIdG~hLp~l~k~df~~LGVTRVg 258 (272)
T KOG4375|consen 208 QRWSKIDVNDWLSSLHLIEYDD---AFHDIEIDGKHLPLLRKLDFRGLGVTRVG 258 (272)
T ss_pred ceeccccHHHHHHhhhhhhcch---hhhhcccccchhhhcchhhhhcccchhhh
Confidence 4799999999999863 23321 13345899999999999999999876666
No 24
>smart00454 SAM Sterile alpha motif. Widespread domain in signalling and nuclear proteins. In EPH-related tyrosine kinases, appears to mediate cell-cell initiated signal transduction via the binding of SH2-containing proteins to a conserved tyrosine that is phosphorylated. In many cases mediates homodimerisation.
Probab=93.61 E-value=0.071 Score=32.15 Aligned_cols=61 Identities=21% Similarity=0.330 Sum_probs=37.7
Q ss_pred cCCCCHHHHHHHHHHHHHhcCCCCC--CCCCCCCChHHhhcCC-hHHHhhhCCCCCh--HHHHHHHHHHH
Q psy15117 25 PRQWSESNVAQWLCWAIREFSLEGV--TLHQFYMRGKDICSMG-KESFLARAPPFMG--DILWEHLEILQ 89 (114)
Q Consensus 25 P~~WS~~~V~~Wl~W~~~ef~L~~v--~~~~F~m~G~~LC~Lt-~edF~~~~p~~~G--diL~~hL~~Lk 89 (114)
+..|+..+|.+||.-. .++.. .+..-.++|.+|+.++ .+++...--...| ..|...++.||
T Consensus 1 ~~~w~~~~v~~wL~~~----g~~~y~~~f~~~~i~g~~ll~~~~~~~l~~lgi~~~~~r~~ll~~i~~l~ 66 (68)
T smart00454 1 VSQWSPESVADWLESI----GLEQYADNFRKNGIDGALLLLLTSEEDLKELGITKLGHRKKILKAIQKLK 66 (68)
T ss_pred CCCCCHHHHHHHHHHC----ChHHHHHHHHHCCCCHHHHHhcChHHHHHHcCCCcHHHHHHHHHHHHHHH
Confidence 4689999999999742 23221 2234478999999999 6655554332234 34444444443
No 25
>PF11814 DUF3335: Peptidase_C39 like family; InterPro: IPR021770 This family of proteins are functionally uncharacterised. This family is only found in bacteria. This presumed domain is typically between 226 to 230 amino acids in length.
Probab=62.59 E-value=11 Score=29.62 Aligned_cols=53 Identities=15% Similarity=0.184 Sum_probs=41.0
Q ss_pred HHHHHHHhHHHHHHhcCCCCCcCCCCHHHHHHHHHHHHHhcCCCCCCCCCCCCChHH
Q psy15117 4 ALKASFASWEKEQIRLNIVKDPRQWSESNVAQWLCWAIREFSLEGVTLHQFYMRGKD 60 (114)
Q Consensus 4 ~~~~~~~~~~~e~~~l~iP~DP~~WS~~~V~~Wl~W~~~ef~L~~v~~~~F~m~G~~ 60 (114)
-++-.-..|+++-++.+||.++..+|.+++.+||. +-.+.-+.++.+.|+|+.
T Consensus 93 v~~~v~~~f~~~a~~~gv~~~~~~~~~~~l~~~l~----~G~~~lvLIS~y~~~g~k 145 (207)
T PF11814_consen 93 VMELVHEDFREEAEQAGVPVHYRPLSLADLRAALA----AGAIVLVLISTYRMDGKK 145 (207)
T ss_pred HHHHHHHHHHHHHHHCCCceecCCCCHHHHHHHHH----CCCEEEEEEeecccCCCC
Confidence 34555678999999999999999999999999985 333444556777777753
No 26
>PF00307 CH: Calponin homology (CH) domain; InterPro: IPR001715 The calponin homology domain (also known as CH-domain) is a superfamily of actin-binding domains found in both cytoskeletal proteins and signal transduction proteins []. It comprises the following groups of actin-binding domains: Actinin-type (including spectrin, fimbrin, ABP-280) (see IPR001589 from INTERPRO). Calponin-type (see IPR000557 from INTERPRO). A comprehensive review of proteins containing this type of actin-binding domains is given in []. The CH domain is involved in actin binding in some members of the family. However in calponins there is evidence that the CH domain is not involved in its actin binding activity []. Most proteins have two copies of the CH domain, however some proteins such as calponin and the human vav proto-oncogene (P15498 from SWISSPROT) have only a single copy. The structure of an example CH-domain has recently been solved []. This entry represents the calponin-homology (CH) domain, a superfamily of actin-binding domains found in cytoskeletal proteins (contain two CH domain in tandem repeat), in regulatory proteins from muscle, and in signal transduction proteins. This domain has a core structure consisting of a 4-helical bundle. This domain is found in: Calponin, which is involved in the regulation of contractility and organisation of the actin cytoskeleton in smooth muscle cells []. Beta-spectrin, a major component of a submembrane cytoskeletal network connecting actin filaments to integral plasma membrane proteins []. The actin-cross-linking domain of the fimbrin/plastin family of actin filament bundling or cross-linking proteins []. Utrophin,a close homologue of dystrophin []. Dystrophin, the protein found to be defective in Duchenne muscular dystrophy; this protein contains a tandem repeat of two CH domains []. Actin-binding domain of plectin, a large and widely expressed cytolinker protein []. The N-terminal microtubule-binding domain of microtubule-associated protein eb1 (end-binding protein), a member of a conserved family of proteins that localise to the plus-ends of microtubules []. Ras GTPase-activating-like protein rng2, an IQGAP protein that is essential for the assembly of an actomyosin ring during cytokinesis []. Transgelin, which suppresses androgen receptor transactivation []. ; GO: 0005515 protein binding; PDB: 2DK9_A 1WYL_A 1WKU_B 1TJT_A 3FER_A 2WA7_A 2WA5_A 2WA6_A 2R0O_A 1PXY_A ....
Probab=59.87 E-value=12 Score=24.24 Aligned_cols=35 Identities=11% Similarity=0.376 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHhc--CCCCCCCCCCCCChHHhhcC
Q psy15117 30 ESNVAQWLCWAIREF--SLEGVTLHQFYMRGKDICSM 64 (114)
Q Consensus 30 ~~~V~~Wl~W~~~ef--~L~~v~~~~F~m~G~~LC~L 64 (114)
+..+.+|++-..... ...-.++...--||..||.|
T Consensus 1 e~~ll~Win~~l~~~~~~~~v~~~~~~l~dG~~L~~L 37 (108)
T PF00307_consen 1 EKELLKWINSHLEKYGKGRRVTNFSEDLRDGVVLCKL 37 (108)
T ss_dssp HHHHHHHHHHHHTTSTTTSTCSSTSGGGTTSHHHHHH
T ss_pred CHHHHHHHHHHcccccCCCCcCcHHHHhcCHHHHHHH
Confidence 356889999888877 33333444445789999987
No 27
>PF13495 Phage_int_SAM_4: Phage integrase, N-terminal SAM-like domain; PDB: 2A3V_A.
Probab=58.42 E-value=14 Score=23.11 Aligned_cols=39 Identities=18% Similarity=0.314 Sum_probs=22.8
Q ss_pred HHHhHHHHHHhcC--CC-CCcCCCCHHHHHHHHHHHHHhcCC
Q psy15117 8 SFASWEKEQIRLN--IV-KDPRQWSESNVAQWLCWAIREFSL 46 (114)
Q Consensus 8 ~~~~~~~e~~~l~--iP-~DP~~WS~~~V~~Wl~W~~~ef~L 46 (114)
|..+|...-.++. +. .+|..+|++||..|+.|...+-++
T Consensus 18 Ti~~Y~~~l~~f~~~~~~~~~~~it~~~i~~y~~~l~~~~~~ 59 (85)
T PF13495_consen 18 TIKNYRYHLKRFLRFLGNKPPDEITPEDIEQYLNYLQNERGL 59 (85)
T ss_dssp HHHHHHHHHHHHHTTSSS--GGG--HHHHHHHHHHHHTTT--
T ss_pred HHHHHHHHHHHHHHHcccCccchhHHHHHHHHHHHHHHhcCC
Confidence 4444444444432 44 689999999999999999965554
No 28
>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]
Probab=56.27 E-value=11 Score=32.09 Aligned_cols=85 Identities=24% Similarity=0.262 Sum_probs=58.6
Q ss_pred HHHHh-cCCCCCcCCCCHHHHHHHHHHHHH---hcCCCCCCCCCCCCChHHhhcCChHHHhhhCCCCChHHHHHHHHHHH
Q psy15117 14 KEQIR-LNIVKDPRQWSESNVAQWLCWAIR---EFSLEGVTLHQFYMRGKDICSMGKESFLARAPPFMGDILWEHLEILQ 89 (114)
Q Consensus 14 ~e~~~-l~iP~DP~~WS~~~V~~Wl~W~~~---ef~L~~v~~~~F~m~G~~LC~Lt~edF~~~~p~~~GdiL~~hL~~Lk 89 (114)
++..+ .+++.++..|-..+|.+||+-..+ +|+|--+|+-.|.=+-+++-.. .- ...+++..-+++|+
T Consensus 257 ~~N~~LNg~~~~~~~~i~~Dvf~~l~~~~~~g~~fDlIilDPPsF~r~k~~~~~~--------~r-dy~~l~~~~~~iL~ 327 (393)
T COG1092 257 RENAELNGLDGDRHRFIVGDVFKWLRKAERRGEKFDLIILDPPSFARSKKQEFSA--------QR-DYKDLNDLALRLLA 327 (393)
T ss_pred HHHHHhcCCCccceeeehhhHHHHHHHHHhcCCcccEEEECCcccccCcccchhH--------HH-HHHHHHHHHHHHcC
Confidence 34444 469999999999999999999998 9999777887776665555222 11 25667777777776
Q ss_pred HccccccccccccccCCCcc
Q psy15117 90 KANAKGVAVATCRRHKMSDQ 109 (114)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~ 109 (114)
..+. +.+.+|-+++..++
T Consensus 328 pgG~--l~~~s~~~~~~~~~ 345 (393)
T COG1092 328 PGGT--LVTSSCSRHFSSDL 345 (393)
T ss_pred CCCE--EEEEecCCccCHHH
Confidence 5432 35556666665553
No 29
>cd00014 CH Calponin homology domain; actin-binding domain which may be present as a single copy or in tandem repeats (which increases binding affinity). The CH domain is found in cytoskeletal and signal transduction proteins, including actin-binding proteins like spectrin, alpha-actinin, dystrophin, utrophin, and fimbrin, proteins essential for regulation of cell shape (cortexillins), and signaling proteins (Vav).
Probab=53.05 E-value=4.4 Score=26.41 Aligned_cols=38 Identities=11% Similarity=0.283 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHhcCC-CCCCCCCCCCChHHhhcCChH
Q psy15117 30 ESNVAQWLCWAIREFSL-EGVTLHQFYMRGKDICSMGKE 67 (114)
Q Consensus 30 ~~~V~~Wl~W~~~ef~L-~~v~~~~F~m~G~~LC~Lt~e 67 (114)
+..+.+|+.....++.. ...|+..---||..||.|-..
T Consensus 3 ~~~l~~Win~~l~~~~~~~v~~~~~~l~dG~~L~~Ll~~ 41 (107)
T cd00014 3 KEELLRWINKVLGEYGPVTINNFSTDLKDGIALCKLLNS 41 (107)
T ss_pred HHHHHHHHHHHhccCCCccHHHHHHHHhchHHHHHHHHH
Confidence 46788999999888876 222344445789999988443
No 30
>smart00033 CH Calponin homology domain. Actin binding domains present in duplicate at the N-termini of spectrin-like proteins (including dystrophin, alpha-actinin). These domains cross-link actin filaments into bundles and networks. A calponin homology domain is predicted in yeasst Cdc24p.
Probab=51.50 E-value=4.8 Score=25.90 Aligned_cols=35 Identities=14% Similarity=0.375 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHhcC-CCCCCCCCCCCChHHhhcC
Q psy15117 30 ESNVAQWLCWAIREFS-LEGVTLHQFYMRGKDICSM 64 (114)
Q Consensus 30 ~~~V~~Wl~W~~~ef~-L~~v~~~~F~m~G~~LC~L 64 (114)
+..+.+|++....++. ..-.++..---||..||.|
T Consensus 2 ~~~l~~Win~~l~~~~~~~v~~~~~~l~dG~~L~~L 37 (103)
T smart00033 2 EKTLLRWVNSLLAEYGKPPVTNFSSDLSDGVALCKL 37 (103)
T ss_pred hHHHHHHHHHHcccCCCCcHHHHHHHHccHHHHHHH
Confidence 4568889998887763 3222334445789999988
No 31
>KOG3678|consensus
Probab=40.17 E-value=33 Score=30.97 Aligned_cols=73 Identities=12% Similarity=0.226 Sum_probs=48.9
Q ss_pred CCCCcCCCCHHHHHHHHHHHH-HhcCCCCCCCCCCCCChHHhhcCChHHHhhhCCCCCh---HHHHHHHHHHHHcccccc
Q psy15117 21 IVKDPRQWSESNVAQWLCWAI-REFSLEGVTLHQFYMRGKDICSMGKESFLARAPPFMG---DILWEHLEILQKANAKGV 96 (114)
Q Consensus 21 iP~DP~~WS~~~V~~Wl~W~~-~ef~L~~v~~~~F~m~G~~LC~Lt~edF~~~~p~~~G---diL~~hL~~Lk~~~~~~~ 96 (114)
|-..-.-|+..+|.-|++-.- .||- -.+..--+||--|..||.+|...-.+-.+| .-++.-|+.||-....+.
T Consensus 458 l~~qVPgWt~AdVQ~WvkkIGFeeY~---EkFakQ~VDGDLLLqLTEndLk~DvGM~SGl~RKRFlRELqtLKv~AdYSs 534 (832)
T KOG3678|consen 458 LAQQVPGWTCADVQYWVKKIGFEEYV---EKFAKQMVDGDLLLQLTENDLKHDVGMISGLHRKRFLRELQTLKVAADYSS 534 (832)
T ss_pred hhccCCCcchHHHHHHHHHhCHHHHH---HHHHHHhccchHHHhhhhhhhhhhhhhhhhhhHHHHHHHHHHHHHhhcccc
Confidence 334455799999999997432 1110 011122467999999999999887764355 567788888887665543
No 32
>PF10281 Ish1: Putative stress-responsive nuclear envelope protein; InterPro: IPR018803 This group of proteins, found primarily in fungi, consists of putative stress-responsive nuclear envelope protein Ish1 and homologues [].
Probab=39.28 E-value=25 Score=19.69 Aligned_cols=12 Identities=42% Similarity=1.124 Sum_probs=11.0
Q ss_pred CCCHHHHHHHHH
Q psy15117 27 QWSESNVAQWLC 38 (114)
Q Consensus 27 ~WS~~~V~~Wl~ 38 (114)
.||.++...||.
T Consensus 3 tWs~~~L~~wL~ 14 (38)
T PF10281_consen 3 TWSDSDLKSWLK 14 (38)
T ss_pred CCCHHHHHHHHH
Confidence 699999999995
No 33
>COG3208 GrsT Predicted thioesterase involved in non-ribosomal peptide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=39.22 E-value=16 Score=29.30 Aligned_cols=37 Identities=19% Similarity=0.368 Sum_probs=32.2
Q ss_pred CCcCCCCHHHHHHHHHHHHHhcCCCCCCCCCCCCChHH
Q psy15117 23 KDPRQWSESNVAQWLCWAIREFSLEGVTLHQFYMRGKD 60 (114)
Q Consensus 23 ~DP~~WS~~~V~~Wl~W~~~ef~L~~v~~~~F~m~G~~ 60 (114)
.|+.. |.+++..|-+|+...|.|.-++-.||-++.+.
T Consensus 186 ~D~~v-s~~~~~~W~~~t~~~f~l~~fdGgHFfl~~~~ 222 (244)
T COG3208 186 KDHEV-SRDELGAWREHTKGDFTLRVFDGGHFFLNQQR 222 (244)
T ss_pred cchhc-cHHHHHHHHHhhcCCceEEEecCcceehhhhH
Confidence 46666 89999999999999999999999999887754
No 34
>PF14436 EndoU_bacteria: Bacterial EndoU nuclease
Probab=32.25 E-value=49 Score=22.89 Aligned_cols=25 Identities=16% Similarity=0.189 Sum_probs=20.4
Q ss_pred CCcCCCCHHHHHHHHHHHHHhcCCC
Q psy15117 23 KDPRQWSESNVAQWLCWAIREFSLE 47 (114)
Q Consensus 23 ~DP~~WS~~~V~~Wl~W~~~ef~L~ 47 (114)
-+|..||.++|...++-+.+.-...
T Consensus 69 ~FP~~ws~~~I~~~i~~a~~n~~~~ 93 (128)
T PF14436_consen 69 FFPKNWSDEKILDEIQEAYKNKYSV 93 (128)
T ss_pred ECCccCCHHHHHHHHHHHHhCCCcc
Confidence 3699999999999999888655553
No 35
>PF11516 DUF3220: Protein of unknown function (DUF3120); InterPro: IPR021597 This family of proteins with unknown function appears to be restricted to Bordetella. ; PDB: 2JPF_A.
Probab=28.81 E-value=32 Score=23.62 Aligned_cols=29 Identities=31% Similarity=0.367 Sum_probs=20.6
Q ss_pred CChHHHhhhCCCCChHHHHHHHHHHHHcccc
Q psy15117 64 MGKESFLARAPPFMGDILWEHLEILQKANAK 94 (114)
Q Consensus 64 Lt~edF~~~~p~~~GdiL~~hL~~Lk~~~~~ 94 (114)
--.++|..|... +-|.||+||+-- +++++
T Consensus 46 rrpdeftarlqq-stdalyshleaq-wakqh 74 (106)
T PF11516_consen 46 RRPDEFTARLQQ-STDALYSHLEAQ-WAKQH 74 (106)
T ss_dssp H-HHHHHHHHHT-TTHHHHHHHHHH-GGGT-
T ss_pred cChHHHHHHHHH-hHHHHHHHHHHH-HHHhc
Confidence 356789888875 799999999853 45444
No 36
>PF02184 HAT: HAT (Half-A-TPR) repeat; InterPro: IPR003107 The HAT (Half A TPR) repeat has a repetitive pattern characterised by three aromatic residues with a conserved spacing. They are structurally and sequentially similar to TPRs (tetratricopeptide repeats), though they lack the highly conserved alanine and glycine residues found in TPRs. The number of HAT repeats found in different proteins varies between 9 and 12. HAT-repeat-containing proteins appear to be components of macromolecular complexes that are required for RNA processing []. The repeats may be involved in protein-protein interactions. The HAT motif has striking structural similarities to HEAT repeats (IPR000357 from INTERPRO), being of a similar length and consisting of two short helices connected by a loop domain, as in HEAT repeats.; GO: 0006396 RNA processing, 0005622 intracellular
Probab=24.27 E-value=31 Score=19.38 Aligned_cols=10 Identities=30% Similarity=0.773 Sum_probs=7.9
Q ss_pred HHHHHHHHHH
Q psy15117 32 NVAQWLCWAI 41 (114)
Q Consensus 32 ~V~~Wl~W~~ 41 (114)
+|..||.|+.
T Consensus 19 ~~k~WikyAk 28 (32)
T PF02184_consen 19 EVKNWIKYAK 28 (32)
T ss_pred CchHHHHHHH
Confidence 5778999885
No 37
>PF15142 INCA1: INCA1
Probab=23.69 E-value=41 Score=25.52 Aligned_cols=16 Identities=44% Similarity=0.854 Sum_probs=12.7
Q ss_pred hhCCCCChHHHHHHHH
Q psy15117 71 ARAPPFMGDILWEHLE 86 (114)
Q Consensus 71 ~~~p~~~GdiL~~hL~ 86 (114)
+..|...|||+|+.|.
T Consensus 23 rlmpq~Ygd~FWenLs 38 (178)
T PF15142_consen 23 RLMPQRYGDIFWENLS 38 (178)
T ss_pred CCCcchhhhHHHHhhc
Confidence 3456679999999986
No 38
>PF06073 DUF934: Bacterial protein of unknown function (DUF934); InterPro: IPR008318 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=22.27 E-value=52 Score=23.22 Aligned_cols=42 Identities=19% Similarity=0.361 Sum_probs=32.3
Q ss_pred CChHHhhcCChHHHhh-hCC---C--CChHHHHHHHHHHHHcccccccccc
Q psy15117 56 MRGKDICSMGKESFLA-RAP---P--FMGDILWEHLEILQKANAKGVAVAT 100 (114)
Q Consensus 56 m~G~~LC~Lt~edF~~-~~p---~--~~GdiL~~hL~~Lk~~~~~~~~~~~ 100 (114)
+||+.- |..-.++ +.+ . ..||+|--++.+|++++..++++.-
T Consensus 31 ~DGRgf---S~ArlLR~r~gy~GelRA~Gdvl~DQl~~l~R~GFdsf~l~~ 78 (110)
T PF06073_consen 31 TDGRGF---SQARLLRERYGYTGELRAVGDVLRDQLFYLRRCGFDSFELRE 78 (110)
T ss_pred CCchHh---HHHHHHHHHcCCCCcEEEeccchHHHHHHHHHcCCCEEEeCC
Confidence 678876 6666666 443 1 3689999999999999999888763
No 39
>PF09447 Cnl2_NKP2: Cnl2/NKP2 family protein; InterPro: IPR018565 This entry includes the Cnl2 kinetochore protein [].
Probab=22.20 E-value=88 Score=20.26 Aligned_cols=35 Identities=14% Similarity=0.162 Sum_probs=25.1
Q ss_pred ChHHhhc-CChHHHhhhCCCC--Ch---HHHHHHHHHHHHc
Q psy15117 57 RGKDICS-MGKESFLARAPPF--MG---DILWEHLEILQKA 91 (114)
Q Consensus 57 ~G~~LC~-Lt~edF~~~~p~~--~G---diL~~hL~~Lk~~ 91 (114)
+...|+. +|.+.|...+|.. .. ..||.+|+..|..
T Consensus 12 s~s~L~~iisl~qF~~LFPr~~~~~P~ir~LYr~Lq~qR~~ 52 (67)
T PF09447_consen 12 SPSSLPDIISLEQFRKLFPRRLRSHPQIRSLYRDLQAQREQ 52 (67)
T ss_pred CcCccccccCHHHHHHHccccCCCChHHHHHHHHHHHHHHH
Confidence 3334443 4889999999862 12 6899999999874
No 40
>KOG1899|consensus
Probab=21.75 E-value=40 Score=31.09 Aligned_cols=45 Identities=16% Similarity=0.457 Sum_probs=34.3
Q ss_pred CCCCHHHHHHHHHHHHHhcCCCCC-C-CCCCCCChHHhhcCChHHHhhhCC
Q psy15117 26 RQWSESNVAQWLCWAIREFSLEGV-T-LHQFYMRGKDICSMGKESFLARAP 74 (114)
Q Consensus 26 ~~WS~~~V~~Wl~W~~~ef~L~~v-~-~~~F~m~G~~LC~Lt~edF~~~~p 74 (114)
..|+.++|+.||- ++.|... + ..++--+|+.+..+|..|+..-..
T Consensus 548 a~W~~EqvcnWla----e~Gl~qY~n~~r~wv~Sg~tfltaS~qd~EkeLn 594 (861)
T KOG1899|consen 548 ADWRSEQVCNWLA----EIGLGQYMNEVRRWVRSGRTFLTASPQDYEKELN 594 (861)
T ss_pred hhccHHHHHHHHH----HhchHHHHHHHHHHHhcCchhhcCCHHHHHHHhc
Confidence 4599999999995 5666542 2 346778899999999999876554
Done!