RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy15117
(114 letters)
>gnl|CDD|188879 cd08533, SAM_PNT-ETS-1,2, Sterile alpha motif (SAM)/Pointed
domain of ETS-1,2 family. SAM Pointed domain of
ETS-1,2 family of transcriptional activators is a
protein-protein interaction domain. It carries a kinase
docking site and mediates interaction between ETS
transcriptional activators and protein kinases. This
group of transcriptional factors is involved in the
Ras/MAP kinase signaling pathway. MAP kinases
phosphorylate the transcription factors.
Phosphorylated factors then recruit coactivators and
enhance transactivation. Members of this group play a
role in regulation of different embryonic developmental
processes. ETS-1,2 transcriptional activators are
proto-oncogenes involved in malignant transformation
and tumor progression. They are potential molecular
targets for selective cancer therapy.
Length = 71
Score = 127 bits (321), Expect = 4e-40
Identities = 48/68 (70%), Positives = 57/68 (83%)
Query: 23 KDPRQWSESNVAQWLCWAIREFSLEGVTLHQFYMRGKDICSMGKESFLARAPPFMGDILW 82
KDPRQWSE+ VA WL WA EFSLEGV L F M G+D+C++GKE+FL+ APPF+GDILW
Sbjct: 2 KDPRQWSETQVAYWLDWAANEFSLEGVNLSNFCMSGRDMCALGKEAFLSLAPPFVGDILW 61
Query: 83 EHLEILQK 90
EHL+ILQK
Sbjct: 62 EHLDILQK 69
>gnl|CDD|176092 cd08542, SAM_PNT-ETS-1, Sterile alpha motif (SAM)/Pointed domain
of ETS-1. SAM Pointed domain of ETS-1 subfamily of ETS
transcriptional activators is a protein-protein
interaction domain. The ETS-1 activator is regulated by
phosphorylation. It contains a docking site for the
ERK2 MAP (Mitogen Activated Protein) kinase, while the
ERK2 phosphorylation site is located in the N-terminal
disordered region upstream of the SAM Pointed domain.
Mutations of the kinase docking site residues inhibit
phosphorylation. ETS-1 activators play a role in a
number of different physiological processes, and they
are expressed during embryonic development, including
blood vessel formation, hematopoietic, lymphoid,
neuronal and osteogenic differentiation. The Ets-1 gene
is a proto-oncogene involved in progression of
different tumors (including breast cancer, meningioma,
and prostate cancer). Members of this subfamily are
potential molecular targets for selective cancer
therapy.
Length = 88
Score = 114 bits (287), Expect = 7e-35
Identities = 50/88 (56%), Positives = 67/88 (76%)
Query: 7 ASFASWEKEQIRLNIVKDPRQWSESNVAQWLCWAIREFSLEGVTLHQFYMRGKDICSMGK 66
A+F+ + KEQ RL I KDPR+W+E++V +W+ WA+ EFSL+GV +F M G +C++GK
Sbjct: 1 ATFSGFTKEQQRLGIPKDPREWTETHVREWVMWAVNEFSLKGVDFQKFCMSGAALCALGK 60
Query: 67 ESFLARAPPFMGDILWEHLEILQKANAK 94
E FL AP F+GDILWEHLEILQK + K
Sbjct: 61 ECFLELAPDFVGDILWEHLEILQKEDPK 88
>gnl|CDD|188884 cd08543, SAM_PNT-ETS-2, Sterile alpha motif (SAM)/Pointed domain
of ETS-2. SAM Pointed domain of ETS-2 subfamily of ETS
transcriptional regulators is a protein-protein
interaction domain. It contains a docking site for
Cdk10 (cyclin-dependent kinase 10), a member of the
Cdc2 kinase family. The interaction between ETS-2 and
Cdk10 kinase inhibits ETS-2 transactivation activity in
mammals. ETS-2 is also regulated by ERK2 MAP kinase.
ETS-2, which is phosphorylated by ERK2, can interact
with coactivators and enhance transactivation. ETS-2
transcriptional activators are involved in embryonic
development and cell cycle control. The Ets-2 gene is a
proto-oncogene. It is overexpressed in breast and
prostate cancer cells and its overexpression is
necessary for transformation of such cells. Members of
ETS-2 subfamily are potential molecular targets for
selective cancer therapy.
Length = 89
Score = 108 bits (272), Expect = 2e-32
Identities = 46/86 (53%), Positives = 58/86 (67%)
Query: 7 ASFASWEKEQIRLNIVKDPRQWSESNVAQWLCWAIREFSLEGVTLHQFYMRGKDICSMGK 66
+F+ + KEQ RL I K+P W+E V QWL WA EFSL V QF M G+++C++GK
Sbjct: 1 DTFSGFSKEQRRLGIPKNPWLWTEQQVCQWLLWATNEFSLVNVNFQQFLMNGQELCNLGK 60
Query: 67 ESFLARAPPFMGDILWEHLEILQKAN 92
E FL AP F+GDILWEHLE + K N
Sbjct: 61 ERFLELAPDFVGDILWEHLEQMIKEN 86
>gnl|CDD|202149 pfam02198, SAM_PNT, Sterile alpha motif (SAM)/Pointed domain.
Length = 83
Score = 107 bits (269), Expect = 5e-32
Identities = 45/84 (53%), Positives = 60/84 (71%), Gaps = 1/84 (1%)
Query: 9 FASWEKEQIRLNIVKDPRQWSESNVAQWLCWAIREFSLEGVTLHQFYMRGKDICSMGKES 68
F +++KEQ RL I DP W+E +V +WL WA++EFSL + F M G+++CSM KE
Sbjct: 1 FNNFKKEQARLGIPADPNLWTEDHVLEWLEWAVKEFSLSPIDFSNFDMSGRELCSMSKEE 60
Query: 69 FLARAPPFMGDILWEHLEILQKAN 92
FL RA PF GDILWEHL+ L+KA+
Sbjct: 61 FLERA-PFPGDILWEHLQNLRKAS 83
>gnl|CDD|128547 smart00251, SAM_PNT, SAM / Pointed domain. A subfamily of the
SAM domain.
Length = 82
Score = 107 bits (269), Expect = 5e-32
Identities = 46/83 (55%), Positives = 60/83 (72%), Gaps = 1/83 (1%)
Query: 9 FASWEKEQIRLNIVKDPRQWSESNVAQWLCWAIREFSLEGVTLHQFYMRGKDICSMGKES 68
++EKEQ RL I DP+ W+E +V +WL WA++EFSL + +F M GK++CSM KE
Sbjct: 1 PPNFEKEQKRLGIPADPQLWTEDHVLEWLEWAVKEFSLSPIDFSKFDMSGKELCSMSKEE 60
Query: 69 FLARAPPFMGDILWEHLEILQKA 91
FL RA PF GDILW HL+IL+KA
Sbjct: 61 FLERA-PFGGDILWSHLQILRKA 82
>gnl|CDD|176084 cd08534, SAM_PNT-GABP-alpha, Sterile alpha motif (SAM)/Pointed
domain of GA-binding protein (GABP) alpha chain. SAM
Pointed domain of GA-binding protein (GABP) alpha
subfamily of ETS transcriptional regulators is a
putative protein-protein interaction domain. This type
of transcriptional regulators forms heterotetramers
containing two alpha and two beta subunits. It
interacts with GA repeats (purine rich repeats). GABP
transcriptional factors control gene expression in cell
cycle control, apoptosis, and cellular respiration.
GABP participates in regulation of transmembrane
receptors and key hormones especially in myeloid cells
and at the neuromuscular junction.
Length = 89
Score = 99.7 bits (249), Expect = 7e-29
Identities = 37/77 (48%), Positives = 52/77 (67%)
Query: 14 KEQIRLNIVKDPRQWSESNVAQWLCWAIREFSLEGVTLHQFYMRGKDICSMGKESFLARA 73
KEQ RL I DP +W+E +V WL WA++EF L G+ L + + G+++CS+ +E FL R
Sbjct: 8 KEQERLKIPYDPMEWTEDHVLHWLQWAVKEFGLTGINLSDWNITGRELCSLTQEEFLQRV 67
Query: 74 PPFMGDILWEHLEILQK 90
P GDI W HLE+L+K
Sbjct: 68 PKDPGDIFWTHLELLRK 84
>gnl|CDD|188876 cd08203, SAM_PNT, Sterile alpha motif (SAM)/Pointed domain.
Sterile alpha motif (SAM)/Pointed domain is found in
about 40% of transcriptional regulators of ETS family
(initially named for Erythroblastosis virus, E26-E
Twenty Six). SAM Pointed domain containing proteins of
this family additionally have a C-terminal ETS
DNA-binding domain. In a few cases, SAM Pointed domain
appears as a single domain protein. Members of this
group are mostly involved in regulation of embryonic
development and growth control in eukaryotes. SAM
Pointed domains mediate protein-protein interactions.
Depending on the subgroup, they can interact with other
SAM Pointed domains forming homo or hetero
dimers/oligomers and/or they can recruit a protein
kinase to its target which can be a SAM Pointed domain
containing protein itself or another protein that has
no kinase docking site. Thus, SAM Pointed domains
participate in transcriptional regulation and signal
transduction. Some genes coding ETS family
transcriptional regulators are proto-oncogenes. They
are prone to chromosomal translocations resulting in
gene fusions. Chimeric proteins with SAM Pointed
domains were found in a number of different human
tumors including myeloid leukemia, lymphoblastic
leukemia, Ewing's sarcoma and primitive neuroectodermal
tumor. Members of this family are potential targets for
cancer therapy.
Length = 67
Score = 83.9 bits (208), Expect = 6e-23
Identities = 29/67 (43%), Positives = 44/67 (65%)
Query: 24 DPRQWSESNVAQWLCWAIREFSLEGVTLHQFYMRGKDICSMGKESFLARAPPFMGDILWE 83
DP +W+ +V QWL W ++FSL+ + +F M GK++C++ KE F RAP GD+L
Sbjct: 1 DPLEWTPEHVQQWLSWVSKKFSLDPIDPDRFPMNGKELCALSKEDFRERAPSRGGDVLAS 60
Query: 84 HLEILQK 90
HL +L+K
Sbjct: 61 HLALLRK 67
>gnl|CDD|176085 cd08535, SAM_PNT-Tel_Yan, Sterile alpha motif (SAM)/Pointed
domain of Tel/Yan protein. SAM Pointed domain of Tel
(Translocation, Ets, Leukemia)/Yan subfamily of ETS
transcriptional repressors is a protein-protein
interaction domain. SAM Pointed domains of this type of
regulators can interact with each other, forming
head-to-tail homodimers or homooligomers, and/or
interact with SAM Pointed domains of another subfamily
of ETS factors forming heterodimers. The oligomeric
form is able to block transcription of target genes and
is involved in MAPK signaling. They participate in
regulation of different processes during embryoniv
development including hematopoietic differentiation and
eye development. Tel/Yan transcriptional factors are
frequent targets of chromosomal translocations
resulting in fusions of SAM domain with new neighboring
genes. Such chimeric proteins were found in different
tumors. Members of this subfamily are potential targets
for cancer therapy.
Length = 68
Score = 73.2 bits (180), Expect = 1e-18
Identities = 31/67 (46%), Positives = 39/67 (58%), Gaps = 1/67 (1%)
Query: 24 DPRQWSESNVAQWLCWAIREFSLEGVTLHQFYMRGKDICSMGKESFLARAPPFMGDILWE 83
PRQWS +V QWL WA EFSL + + F M GK +C + KE F R P GD+L+
Sbjct: 2 QPRQWSREDVLQWLRWAENEFSLPPIDSNTFEMNGKALCLLTKEDFRYRC-PHAGDVLYN 60
Query: 84 HLEILQK 90
L+ L K
Sbjct: 61 LLQHLLK 67
>gnl|CDD|188878 cd08532, SAM_PNT-PDEF-like, Sterile alpha motif (SAM)/Pointed
domain of prostate-derived ETS factor. SAM Pointed
domain of PDEF-like (Prostate-Derived ETS Factor)
subfamily of ETS transcriptional regulators is a
putative protein-protein interaction domain. In human
males this activator is highly expressed in the
prostate gland and enhances androgen-mediated
activation of the PSA promoter though interaction with
the DNA binding domain of androgen receptor. PDEF may
play a role in prostate cancer development as well as
in goblet cell formation and mucus production in the
epithelial lining of respiratory and intestinal tracts.
Length = 81
Score = 72.8 bits (179), Expect = 2e-18
Identities = 30/75 (40%), Positives = 39/75 (52%), Gaps = 1/75 (1%)
Query: 19 LNIVKDPRQWSESNVAQWLCWAIREFSLEGVTLHQFYMRGKDICSMGKESFLARAPPFMG 78
L I DP QWS +NV WL W ++ L F M GK +C++ +E F+ RAP G
Sbjct: 8 LGISPDPYQWSTANVQAWLQWTEHQYRLPPNPPRCFQMNGKTLCALSEEDFVRRAPQ-GG 66
Query: 79 DILWEHLEILQKANA 93
D L LEI + A
Sbjct: 67 DTLHAQLEIWKSAAE 81
>gnl|CDD|188877 cd08531, SAM_PNT-ERG_FLI-1, Sterile alpha motif (SAM)/Pointed
domain of ERG (Ets related gene) and FLI-1 (Friend
leukemia integration 1) transcription factors. SAM
Pointed domain of ERG/FLI-1 subfamily of ETS
transcriptional regulators is a putative
protein-protein interaction domain. The ERG and FLI
regulators are involved in endothelial cell
differentiation, bone morphogenesis and neural crest
development. They are proto-oncogenes implicated in
cancer development such as myeloid leukemia, Ewing's
sarcoma and erythroleukemia. Members of this subfamily
are potential targets for cancer therapy.
Length = 75
Score = 66.3 bits (162), Expect = 7e-16
Identities = 26/68 (38%), Positives = 43/68 (63%), Gaps = 1/68 (1%)
Query: 24 DPRQWSESNVAQWLCWAIREFSLEGVTLHQF-YMRGKDICSMGKESFLARAPPFMGDILW 82
DP W+ +V QW+ WAI+E+SL+ V + +F + GK++C M ++ FL + GD+L
Sbjct: 4 DPLLWTREHVRQWVEWAIKEYSLKDVDVSRFDNIDGKELCRMTRDDFLRLTSAYNGDVLI 63
Query: 83 EHLEILQK 90
HL L++
Sbjct: 64 SHLCYLRQ 71
>gnl|CDD|176090 cd08540, SAM_PNT-ERG, Sterile alpha motif (SAM)/Pointed domain of
ERG transcription factor. SAM Pointed domain of ERG
subfamily of ETS transcriptional regulators is a
putative protein-protein interaction domain. It may
participate in formation of homodimers or heterodimers
with ETS-2, Fli-1, ER81, and Pu-1. However, dimeric
forms are inactive and SAM Pointed domain is not
essential for dimerization, since ER81 and Pu-1 do not
have it. In mouse, a regulator of this type binds the
ESET histone H3-specific methyltransferase (human
homolog is SETDB1), which leads to modification of the
local chromatin structure through histone methylation.
ERG regulators are involved in endothelial cell
differentiation, bone morphogenesis and neural crest
development. The Erg gene is a proto-oncogene. It is a
target of chromosomal translocations resulting in
fusions with other neighboring genes. Chimeric proteins
were found in solid tumors such as myeloid leukemia or
Ewing's sarcoma. Members of this subfamily are
potential targets for cancer therapy.
Length = 75
Score = 58.4 bits (141), Expect = 8e-13
Identities = 28/68 (41%), Positives = 39/68 (57%), Gaps = 1/68 (1%)
Query: 24 DPRQWSESNVAQWLCWAIREFSLEGVTLHQFY-MRGKDICSMGKESFLARAPPFMGDILW 82
DP WS +V QWL WA++E+ L V + F + GK++C M KE F P + DIL
Sbjct: 4 DPTLWSTDHVRQWLEWAVKEYGLPDVDVLLFQNIDGKELCKMTKEDFQRLTPSYNADILL 63
Query: 83 EHLEILQK 90
HL L++
Sbjct: 64 SHLHYLRE 71
>gnl|CDD|176086 cd08536, SAM_PNT-Mae, Sterile alpha motif (SAM)/Pointed domain of
Mae protein homolog. Mae (Modulator of the Activity of
ETS) subfamily represents a group of SAM Pointed
monodomain proteins. SAM Pointed domain is a
protein-protein interaction domain. It can interact
with other SAM pointed domains forming head-to-tail
heterodimers and also provides a kinase docking site.
For example, in Drosophila Mae is required for
facilitating phosphorylation of the Yan factor and for
blocking phosphorylation of the ETS-2 regulator. Mae
interacts with the SAM Pointed domains of Yan and
ETS-2. Binding enhances access of the kinase to the Yan
phosphorylation site by providing a kinase docking
site, or inhibits phosphorylation of ETS-2 by blocking
its docking site. This type of factors participates in
regulation of kinase signaling particularly during
embryogenesis.
Length = 66
Score = 57.3 bits (139), Expect = 2e-12
Identities = 27/60 (45%), Positives = 33/60 (55%), Gaps = 1/60 (1%)
Query: 24 DPRQWSESNVAQWLCWAIREFSLEGVTLHQFYMRGKDICSMGKESFLARAPPFMGDILWE 83
DPR WS +V WL W + LE V L +F M GK +C M E FL R P G +L+E
Sbjct: 1 DPRSWSREHVRTWLRWVSARYQLEVVDLDKFLMNGKGLCLMSLEGFLYRV-PVGGKLLYE 59
>gnl|CDD|188883 cd08541, SAM_PNT-FLI-1, Sterile alpha motif (SAM)/Pointed domain
of friend leukemia integration 1 transcription
activator. SAM Pointed domain of FLI-1 (Friend
Leukemia Integration) subfamily of ETS transcriptional
regulators is a putative protein-protein interaction
domain. The FLI-1 protein participates in regulation of
cellular differentiation, proliferation, and survival.
The Fli-1 gene was initially described in Friend
virus-induced erythroleukemias as a site for virus
integration. It is highly expressed in hematopoietic
tissues and at lower level in lungs, heart, and
ovaries. Fli-1 is a proto-oncogene implicated in
Ewing's sarcoma and erythroleukemia. Members of this
subfamily are potential targets for cancer therapy.
Length = 91
Score = 57.4 bits (138), Expect = 4e-12
Identities = 28/77 (36%), Positives = 45/77 (58%), Gaps = 1/77 (1%)
Query: 18 RLNIVKDPRQWSESNVAQWLCWAIREFSLEGVTLHQFY-MRGKDICSMGKESFLARAPPF 76
R+ + DP WS+ +V QWL WAI+E+ L + F M GK++C M KE FL +
Sbjct: 10 RVIVPADPTLWSQDHVRQWLEWAIKEYGLMEIDTSLFQNMDGKELCKMSKEDFLRLTSLY 69
Query: 77 MGDILWEHLEILQKANA 93
++L HL L+++++
Sbjct: 70 NTEVLLSHLNYLRESSS 86
>gnl|CDD|188881 cd08538, SAM_PNT-ESE-2-like, Sterile alpha motif (SAM)/Pointed
domain of ESE-2 like ETS transcriptional regulators.
SAM Pointed domain of ESE-2-like (Epithelium-Specific
ETS) subfamily of ETS transcriptional regulators is a
putative protein-protein interaction domain. It can act
as a major transactivator by providing a potential
docking site for co-activators. ESE-2 factors are
involved in regulation of gene expression in a variety
of epithelial (glandular and secretory) cells. ESE-2
mRNA was found in skin keratinocytes, salivary gland,
mammary gland, stomach, prostate, and kidneys. The DNA
binding consensus motif for ESE-2 consists of a GGA
core and AT-rich flanks. The expression profiles of
these factors are altered in epithelial cancers.
Members of this subfamily are potential targets for
cancer therapy.
Length = 84
Score = 33.8 bits (77), Expect = 0.003
Identities = 15/51 (29%), Positives = 28/51 (54%), Gaps = 2/51 (3%)
Query: 25 PRQWSESNVAQWLCWAIREFSLEG--VTLHQFYMRGKDICSMGKESFLARA 73
P W++ +V +WL + ++ L+ ++ F + G +CSM +E FL A
Sbjct: 13 PEYWTKRHVWEWLQFCCDQYKLDANCISFCHFNISGLQLCSMTQEEFLDAA 63
>gnl|CDD|188885 cd08757, SAM_PNT_ESE, Sterile alpha motif (SAM)/Pointed domain of
ESE-like ETS transcriptional regulators. SAM Pointed
domain of ESE-like (Epithelium-Specific ETS) subfamily
of ETS transcriptional regulators is a putative
protein-protein interaction domain. It can act as a
major transactivator by providing a potential docking
site for co-activators. ETS factors are important for
cell differentiation. They can be involved in
regulation of gene expression in different types of
epithelial cells. They are expressed in salivary gland,
intestine, stomach, pancreas, lungs, kidneys, colon,
mammary gland, and prostate. Members of this group are
proto-oncogenes. Expression profiles of these factors
are altered in epithelial cancers, which makes them
potential targets for cancer therapy.
Length = 69
Score = 32.7 bits (75), Expect = 0.006
Identities = 17/65 (26%), Positives = 34/65 (52%), Gaps = 4/65 (6%)
Query: 24 DPRQWSESNVAQWLCWAIRE--FSLEGVTLHQF-YMRGKDICSMGKESFLARAPPFMGDI 80
P+ W++++V WL + + E + +F + G+ +CSM E F+ R + G++
Sbjct: 1 HPQHWTKNDVLDWLLFVAEQNKIDAEEINFQKFDNIDGQTLCSMSLEEFIERDGVY-GNL 59
Query: 81 LWEHL 85
L+ L
Sbjct: 60 LYAEL 64
>gnl|CDD|188880 cd08537, SAM_PNT-ESE-1-like, Sterile alpha motif (SAM)/Pointed
domain of ESE-1 like ETS transcriptional regulators.
SAM Pointed domain of ESE-1-like (Epithelium-Specific
ETS) subfamily of ETS transcriptional regulators is a
putative protein-protein interaction domain. SAM
Pointed domain of ESE-1 provides a potential docking
site for signaling kinase Pak1 in humans. ESE-1 factors
are involved in regulation of gene expression in
different types of epithelial cells. ESE-1 is expressed
in many different organs including intestine, stomach,
pancreas, lungs, kidneys, and prostate. The DNA binding
consensus motif for ESE-1 consists of a purine-rich
GGA[AT] core sequence. The expression profile of these
factors is altered in epithelial cancers if compared to
normal tissues. Members of this subfamily are potential
targets for cancer therapy.
Length = 81
Score = 32.1 bits (73), Expect = 0.015
Identities = 21/81 (25%), Positives = 38/81 (46%), Gaps = 10/81 (12%)
Query: 8 SFASWEKEQIRLNIVKDPRQWSESNVAQWLCWAIRE--FSLEGVTLHQFYMRGKDICSMG 65
+ SW++E P+ WS+ NV +W+ + + + + + L M G +C+
Sbjct: 3 TKGSWDQEN--------PQFWSKQNVLEWISYHVEKNKYDASSLDLSYCTMDGLTLCACA 54
Query: 66 KESFLARAPPFMGDILWEHLE 86
KE + P +GD+L LE
Sbjct: 55 KEQLMLVFGPELGDLLHHSLE 75
>gnl|CDD|224794 COG1882, PflD, Pyruvate-formate lyase [Energy production and
conversion].
Length = 755
Score = 28.1 bits (63), Expect = 1.1
Identities = 12/24 (50%), Positives = 13/24 (54%), Gaps = 1/24 (4%)
Query: 65 GKESFLARAPPFMGDILWEHLEIL 88
G ESFLA A L E +EIL
Sbjct: 38 GDESFLAGATE-ATTKLLEKVEIL 60
>gnl|CDD|182300 PRK10200, PRK10200, putative racemase; Provisional.
Length = 230
Score = 27.6 bits (61), Expect = 1.5
Identities = 14/31 (45%), Positives = 20/31 (64%)
Query: 78 GDILWEHLEILQKANAKGVAVATCRRHKMSD 108
GDIL E LQ+A A+G+ + T HK++D
Sbjct: 61 GDILAEAALGLQRAGAEGIVLCTNTMHKVAD 91
>gnl|CDD|240435 PTZ00485, PTZ00485, aldolase 1-epimerase; Provisional.
Length = 376
Score = 26.9 bits (59), Expect = 2.6
Identities = 14/61 (22%), Positives = 28/61 (45%), Gaps = 9/61 (14%)
Query: 44 FSLEGVTLHQFYMRGKDICSMGKESFLARAPPFMGDILWEHLEILQKANAKGVAVATCRR 103
F+L+GV + RG++ C G +++ + W +++++ AN GV
Sbjct: 84 FTLDGVKYYTQKNRGENTCHCGDDAYHKKH--------W-GMKLIETANVIGVRFNYTSP 134
Query: 104 H 104
H
Sbjct: 135 H 135
>gnl|CDD|212523 cd09999, Arginase-like_1, Arginase-like amidino hydrolase family.
This family includes arginase, also known as
arginase-like amidino hydrolase family, as well as
arginase-like proteins and are found in bacteria,
archaea and eykaryotes, but does not include metazoan
arginases. Arginase is a binuclear Mn-dependent
metalloenzyme and catalyzes hydrolysis of L-arginine to
L-ornithine and urea (Arg, EC 3.5.3.1), the reaction
being the fifth and final step in the urea cycle,
providing the path for the disposal of nitrogenous
compounds. Arginase controls cellular levels of arginine
and ornithine which are involved in protein
biosynthesis, and in production of creatine, polyamines,
proline and nitric acid.
Length = 272
Score = 26.4 bits (59), Expect = 3.4
Identities = 18/100 (18%), Positives = 32/100 (32%), Gaps = 25/100 (25%)
Query: 12 WEKEQIRLNIVKDPRQWSESNVAQWLCWAIREFSLEGVTLH-------QFYMRGKDICSM 64
E+E I ++ R + AQ + ++E L GV +H D
Sbjct: 165 EEEEFIARLGIRVLRPEGLAASAQAVLDWLKEEGLSGVWIHLDLDVLDPAIFPAVD---- 220
Query: 65 GKESFLARAPPFMGDILWEHLE-----ILQKANAKGVAVA 99
P G + + L + A+ G+ +A
Sbjct: 221 -------FPEP--GGLSLDELVALLAALAASADLVGLTIA 251
>gnl|CDD|236733 PRK10672, PRK10672, rare lipoprotein A; Provisional.
Length = 361
Score = 25.8 bits (57), Expect = 5.5
Identities = 6/16 (37%), Positives = 11/16 (68%)
Query: 21 IVKDPRQWSESNVAQW 36
IV+DP +S++ +A
Sbjct: 70 IVQDPSNFSQAGLAAI 85
>gnl|CDD|240074 cd04723, HisA_HisF, Phosphoribosylformimino-5-aminoimidazole
carboxamide ribonucleotide (ProFAR) isomerase (HisA) and
the cyclase subunit of imidazoleglycerol phosphate
synthase (HisF). The ProFAR isomerase catalyzes the
fourth step in histidine biosynthesis, an isomerisation
of the aminoaldose moiety of ProFAR to the aminoketose
of PRFAR
(N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-
phospho-ribosyl)-4-imidazolecarboxamide). In bacteria
and archaea, ProFAR isomerase is encoded by the HisA
gene. The Imidazole glycerol phosphate synthase (IGPS)
catalyzes the fifth step of histidine biosynthesis, the
formation of the imidazole ring. IGPS converts
N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-
carboxamide ribonucleotide (PRFAR) to imidazole glycerol
phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide)
ribonucleotide (AICAR). This conversion involves two
tightly coupled reactions in distinct active sites of
IGPS. The two catalytic domains can be fused, like in
fungi and plants, or peformed by a heterodimer
(HisH-glutaminase and HisF-cyclase), like in bacteria.
Length = 233
Score = 25.3 bits (56), Expect = 7.1
Identities = 9/18 (50%), Positives = 12/18 (66%)
Query: 83 EHLEILQKANAKGVAVAT 100
E LE+L+K A G VA+
Sbjct: 202 EDLELLKKLGASGALVAS 219
>gnl|CDD|131458 TIGR02405, trehalos_R_Ecol, trehalose operon repressor,
proteobacterial. This family consists of repressors of
the LacI family typically associated with trehalose
utilization operons. Trehalose is imported as
trehalose-6-phosphate and then hydrolyzed by
alpha,alpha-phosphotrehalase to glucose and glucose-6-P.
This family includes repressors mostly from
Gammaproteobacteria and does not include the GntR family
TreR of Bacillus subtilis [Regulatory functions, DNA
interactions].
Length = 311
Score = 25.6 bits (56), Expect = 7.2
Identities = 18/46 (39%), Positives = 20/46 (43%), Gaps = 8/46 (17%)
Query: 51 LHQFYMRGKDICSMGKESFLARAPPFMGDILWEHLEILQKANAKGV 96
L FY G D M ES F + EHL +LQK N GV
Sbjct: 82 LPVFYTAGYDPIIM--ES------QFSPQLTNEHLSVLQKRNVDGV 119
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.323 0.132 0.422
Gapped
Lambda K H
0.267 0.0737 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 5,728,896
Number of extensions: 470125
Number of successful extensions: 526
Number of sequences better than 10.0: 1
Number of HSP's gapped: 517
Number of HSP's successfully gapped: 31
Length of query: 114
Length of database: 10,937,602
Length adjustment: 78
Effective length of query: 36
Effective length of database: 7,477,990
Effective search space: 269207640
Effective search space used: 269207640
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 53 (24.2 bits)