RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy15117
(114 letters)
>2jv3_A ETS1 proto-oncogene; ETS-1 pointed (PNT) domain, MAP kinase
phosphorylation site, alpha-helical bundle,
transcription factor, DNA-binding, nucleus; NMR {Mus
musculus} PDB: 2kmd_A*
Length = 110
Score = 128 bits (324), Expect = 2e-40
Identities = 55/94 (58%), Positives = 72/94 (76%)
Query: 1 MTEALKASFASWEKEQIRLNIVKDPRQWSESNVAQWLCWAIREFSLEGVTLHQFYMRGKD 60
M++ALKA+F+ + KEQ RL I KDPRQW+E++V W+ WA+ EFSL+GV +F M G
Sbjct: 17 MSQALKATFSGFTKEQQRLGIPKDPRQWTETHVRDWVMWAVNEFSLKGVDFQKFCMSGAA 76
Query: 61 ICSMGKESFLARAPPFMGDILWEHLEILQKANAK 94
+C++GKE FL AP F+GDILWEHLEILQK + K
Sbjct: 77 LCALGKECFLELAPDFVGDILWEHLEILQKEDVK 110
>1sxd_A GA repeat binding protein, alpha; alpha helical, transcription,
signaling protein; NMR {Mus musculus} SCOP: a.60.1.1
Length = 91
Score = 115 bits (289), Expect = 3e-35
Identities = 34/85 (40%), Positives = 50/85 (58%), Gaps = 2/85 (2%)
Query: 7 ASFASWEKEQIRLNIVKDPRQWSESNVAQWLCWAIREFSLEGVTLHQFYMRGKDICSMGK 66
A+ + KEQ RL I DP WS V W+ W ++EFS+ + L + G+++CS+ +
Sbjct: 5 AALEGYRKEQERLGIPYDPIHWSTDQVLHWVVWVMKEFSMTDIDLTTLNISGRELCSLNQ 64
Query: 67 ESFLARAPPFMGDILWEHLEILQKA 91
E F R P G+ILW HLE+L+K
Sbjct: 65 EDFFQRVPR--GEILWSHLELLRKY 87
>1x66_A Friend leukemia integration 1 transcription factor; cell-free
protein synthesis, protein regulation, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 98
Score = 113 bits (285), Expect = 1e-34
Identities = 28/85 (32%), Positives = 48/85 (56%), Gaps = 1/85 (1%)
Query: 11 SWEKEQIRLNIVKDPRQWSESNVAQWLCWAIREFSLEGVTLHQFY-MRGKDICSMGKESF 69
+ + R+ + DP W++ +V QWL WAI+E+SL + F M GK++C M KE F
Sbjct: 10 NMTTNERRVIVPADPTLWTQEHVRQWLEWAIKEYSLMEIDTSFFQNMDGKELCKMNKEDF 69
Query: 70 LARAPPFMGDILWEHLEILQKANAK 94
L + ++L HL L+++++
Sbjct: 70 LRATTLYNTEVLLSHLSYLRESSSG 94
>2ytu_A Friend leukemia integration 1 transcription factor; cell-free
protein synthesis, protein regulation, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 128
Score = 112 bits (281), Expect = 1e-33
Identities = 30/93 (32%), Positives = 49/93 (52%), Gaps = 1/93 (1%)
Query: 1 MTEALKASFASWEKEQIRLNIVKDPRQWSESNVAQWLCWAIREFSLEGVTLHQFY-MRGK 59
M E + + R+ + DP W++ +V QWL WAI+E+SL + F M GK
Sbjct: 14 MDEKNGPPPPNMTTNERRVIVPADPTLWTQEHVRQWLEWAIKEYSLMEIDTSFFQNMDGK 73
Query: 60 DICSMGKESFLARAPPFMGDILWEHLEILQKAN 92
++C M KE FL + ++L HL L++++
Sbjct: 74 ELCKMNKEDFLRATTLYNTEVLLSHLSYLRESS 106
>2dkx_A SAM pointed domain-containing ETS transcription factor; cell-free
protein synthesis, protein regulation, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 96
Score = 107 bits (269), Expect = 3e-32
Identities = 30/89 (33%), Positives = 45/89 (50%), Gaps = 1/89 (1%)
Query: 6 KASFASWEKEQIRLNIVKDPRQWSESNVAQWLCWAIREFSLEGVTLHQFYMRGKDICSMG 65
+ E LNI DP WS SNV +WL W ++ L + + GK++C+M
Sbjct: 5 SSGLKDIETACKLLNITADPMDWSPSNVQKWLLWTEHQYRLPPMGKAFQELAGKELCAMS 64
Query: 66 KESFLARAPPFMGDILWEHLEILQKANAK 94
+E F R+ P GD+L HL+I + A +
Sbjct: 65 EEQFRQRS-PLGGDVLHAHLDIWKSAASG 92
>1sxe_A Transcriptional regulator ERG; alpha helical, signaling protein;
NMR {Homo sapiens} SCOP: a.60.1.1
Length = 97
Score = 105 bits (263), Expect = 3e-31
Identities = 28/82 (34%), Positives = 44/82 (53%), Gaps = 1/82 (1%)
Query: 10 ASWEKEQIRLNIVKDPRQWSESNVAQWLCWAIREFSLEGVTLHQFY-MRGKDICSMGKES 68
+ + R+ + DP WS +V QWL WA++E+ L V + F + GK++C M K+
Sbjct: 12 PNMTTNERRVIVPADPTLWSTDHVRQWLEWAVKEYGLPDVNILLFQNIDGKELCKMTKDD 71
Query: 69 FLARAPPFMGDILWEHLEILQK 90
F P + DIL HL L++
Sbjct: 72 FQRLTPSYNADILLSHLHYLRE 93
>1sv0_A ETS DNA-binding protein pokkuri; alpha-helix, 3(10) helix,
transcription; 2.07A {Drosophila melanogaster} SCOP:
a.60.1.1 PDB: 1sv4_A
Length = 85
Score = 102 bits (256), Expect = 3e-30
Identities = 25/77 (32%), Positives = 40/77 (51%), Gaps = 1/77 (1%)
Query: 16 QIRLNIVKDPRQWSESNVAQWLCWAIREFSLEGVTLHQFYMRGKDICSMGKESFLARAPP 75
Q+ ++ DPR WS +V +L + +REF L + F M GK +C + + F R P
Sbjct: 1 QLPPSLPSDPRLWSREDVLVFLRFCVREFDLPKLDFDLFQMNGKRLCLLTRADFGHRCPG 60
Query: 76 FMGDILWEHLEILQKAN 92
GD+L L++L +
Sbjct: 61 -AGDVLHNVLQMLIIES 76
>2qar_B Telsam domain; polymer, crystallization modules, sterIle alpha
motif, hydro regulator; 2.40A {Escherichia coli}
Length = 93
Score = 102 bits (256), Expect = 3e-30
Identities = 29/77 (37%), Positives = 43/77 (55%), Gaps = 1/77 (1%)
Query: 16 QIRLNIVKDPRQWSESNVAQWLCWAIREFSLEGVTLHQFYMRGKDICSMGKESFLARAPP 75
++ ++ P WS +VAQWL WA EFSL + + F M GK + + KE F R+ P
Sbjct: 3 RLPAHLRLQPIYWSRDDVAQWLKWAENEFSLSPIDSNTFEMNGKALLLLTKEDFRYRS-P 61
Query: 76 FMGDILWEHLEILQKAN 92
GD+L+E L+ + K
Sbjct: 62 HSGDVLYELLQHILKQR 78
>1ji7_A ETS-related protein TEL1; helical polymer, transcription; 1.45A
{Homo sapiens} SCOP: a.60.1.1 PDB: 2qar_A 2qb0_A 1lky_A
1lky_B 2qb1_A
Length = 89
Score = 101 bits (254), Expect = 6e-30
Identities = 29/75 (38%), Positives = 42/75 (56%), Gaps = 1/75 (1%)
Query: 16 QIRLNIVKDPRQWSESNVAQWLCWAIREFSLEGVTLHQFYMRGKDICSMGKESFLARAPP 75
++ ++ P WS +VAQWL WA EFSL + + F M GK + + KE F R+ P
Sbjct: 3 RLPAHLRLQPIYWSRDDVAQWLKWAENEFSLRPIDSNTFEMNGKALLLLTKEDFRYRS-P 61
Query: 76 FMGDILWEHLEILQK 90
GD L+E L+ + K
Sbjct: 62 HSGDELYELLQHILK 76
>1sv0_C Modulator of the activity of ETS CG15085-PA; alpha-helix, 3(10)
helix, transcription; 2.07A {Drosophila melanogaster}
SCOP: a.60.1.1
Length = 82
Score = 91.8 bits (228), Expect = 5e-26
Identities = 20/78 (25%), Positives = 35/78 (44%), Gaps = 4/78 (5%)
Query: 20 NIVKDPRQWSESNVAQWL--CWAIREFSLEGVTLHQFYMRGKDICSMGKESFLARAPPFM 77
+ DPR W+ ++V +WL + +F M GK +C M + +L R P
Sbjct: 6 GLPLDPRDWTRADVWKWLINMAVSEGLEVTAELPQKFPMNGKALCLMSLDMYLCRV-PVG 64
Query: 78 GDILWEHLE-ILQKANAK 94
G +L+ L +A ++
Sbjct: 65 GKMLYRDFRVRLARAMSR 82
>2qb0_B Telsam domain - lysozyme chimera; helical polymer, hydrolase
regulator; 2.56A {Escherichia coli}
Length = 241
Score = 87.7 bits (216), Expect = 8e-23
Identities = 29/75 (38%), Positives = 43/75 (57%), Gaps = 1/75 (1%)
Query: 16 QIRLNIVKDPRQWSESNVAQWLCWAIREFSLEGVTLHQFYMRGKDICSMGKESFLARAPP 75
++ ++ P WS +VAQWL WA EFSL + + F M GK + + KE F R+ P
Sbjct: 3 RLPAHLRLQPIYWSRDDVAQWLKWAENEFSLRPIDSNTFEMNGKALLLLTKEDFRYRS-P 61
Query: 76 FMGDILWEHLEILQK 90
GD+L+E L+ + K
Sbjct: 62 HSGDVLYELLQHILK 76
>2e8p_A ELF3 protein; cell-free protein synthesis, protein regulation,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 92
Score = 77.8 bits (191), Expect = 2e-20
Identities = 15/71 (21%), Positives = 29/71 (40%), Gaps = 3/71 (4%)
Query: 23 KDPRQWSESNVAQWLCWAIRE--FSLEGVTLHQFYMRGKDICSMGKESFLARAPPFMGDI 80
+ P+ WS++ V W+ + + + + + + M G +C+ E P GD
Sbjct: 22 EQPQFWSKTQVLDWISYQVEKNKYDASAIDFSRCDMDGATLCNCALEELRLVFGPL-GDQ 80
Query: 81 LWEHLEILQKA 91
L L L +
Sbjct: 81 LHAQLRDLTSS 91
>1pk1_B Sex COMB on midleg CG9495-PA; hetero SAM domain, polymers,
transcriptional repression, transcription repression;
1.80A {Drosophila melanogaster} SCOP: a.60.1.2 PDB:
1pk3_A
Length = 89
Score = 31.4 bits (71), Expect = 0.016
Identities = 10/58 (17%), Positives = 23/58 (39%)
Query: 13 EKEQIRLNIVKDPRQWSESNVAQWLCWAIREFSLEGVTLHQFYMRGKDICSMGKESFL 70
EK + ++ P W+ V Q++ ++ G + + GK + + E +
Sbjct: 2 EKTRANSHLRSQPIDWTIEEVIQYIESNDNSLAVHGDLFRKHEIDGKALLRLNSERMM 59
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 30.0 bits (67), Expect = 0.13
Identities = 16/99 (16%), Positives = 31/99 (31%), Gaps = 21/99 (21%)
Query: 5 LKASFASWEKEQIRLNIVKDPRQWSESN-VAQWLCWAIREFS----------LEGVTLHQ 53
L+ F E D + + V ++L + L + L +
Sbjct: 33 LQEQFNKILPEPTE-GFAADDEPTTPAELVGKFLGYVSSLVEPSKVGQFDQVLN-LCLTE 90
Query: 54 F---YMRGKDICSMGKESFLARAPPFMGDILWEHLEILQ 89
F Y+ G DI + A+ L + E+++
Sbjct: 91 FENCYLEGNDI-----HALAAKLLQENDTTLVKTKELIK 124
>2e8o_A SAM domain and HD domain-containing protein 1; cell-free protein
synthesis, protein regulation, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 103
Score = 26.4 bits (58), Expect = 1.5
Identities = 4/15 (26%), Positives = 6/15 (40%)
Query: 23 KDPRQWSESNVAQWL 37
D + W V +L
Sbjct: 25 PDYKTWGPEQVCSFL 39
>2d8c_A Phosphatidylcholine:ceramide cholinephosphotransferase 1;
cell-free protein synthesis, protein regulation, lipid
metabolism, structural genomics; NMR {Mus musculus}
SCOP: a.60.1.2
Length = 97
Score = 25.9 bits (56), Expect = 1.8
Identities = 19/91 (20%), Positives = 36/91 (39%), Gaps = 16/91 (17%)
Query: 10 ASWEKEQIRLNIVKDPRQWSESNVAQWLCWAIREFSLEGV--TLHQFYMRGKDICSMGKE 67
+S + +K+ WS VA WL E ++ L G+D+ ++ +E
Sbjct: 2 SSGSSGMLSARTMKEVVYWSPKKVADWL----LENAMPEYCEPLEH--FTGQDLINLTQE 55
Query: 68 SFLARAPPF----MGDI--LWEHLEILQKAN 92
F + PP + L + +E L+ +
Sbjct: 56 DF--KKPPLYRVSSDNGQRLLDMIETLKMEH 84
>4e4u_A Mandalate racemase/muconate lactonizing enzyme; mandelate racemase,
aldolase, structural genomics, biology; 1.35A
{Unidentified}
Length = 412
Score = 26.1 bits (58), Expect = 3.1
Identities = 4/34 (11%), Positives = 12/34 (35%)
Query: 3 EALKASFASWEKEQIRLNIVKDPRQWSESNVAQW 36
+ + E++ L + + P + A+
Sbjct: 372 MDVVKRHTPYTGERLHLQMGEHPVDVKDLAPAKG 405
>1iq6_A (R)-hydratase, (R)-specific enoyl-COA hydratase;
polyhydroxyalkanoate, aeromonas caviae, the hydratase 2
motif, lyase; 1.50A {Aeromonas punctata} SCOP: d.38.1.4
Length = 134
Score = 25.3 bits (56), Expect = 4.6
Identities = 9/31 (29%), Positives = 15/31 (48%)
Query: 72 RAPPFMGDILWEHLEILQKANAKGVAVATCR 102
+ P F+GD + +E+ K +A T R
Sbjct: 85 KLPVFVGDEVTAEVEVTALREDKPIATLTTR 115
>1kw4_A Polyhomeotic; SAM domain, polycomb group, polymer, DNA binding
protein; 1.75A {Drosophila melanogaster} SCOP: a.60.1.2
PDB: 1pk1_A
Length = 89
Score = 24.1 bits (52), Expect = 8.7
Identities = 5/38 (13%), Positives = 12/38 (31%), Gaps = 9/38 (23%)
Query: 23 KDPRQWSESNVAQWL---------CWAIREFSLEGVTL 51
WS +V+ ++ + ++G L
Sbjct: 12 PPISSWSVDDVSNFIRELPGCQDYVDDFIQQEIDGQAL 49
>3bs7_A Protein aveugle; sterIle alpha motif (SAM) domain, cytoplasm,
membrane, sensory transduction, vision, signaling
protein; 1.90A {Drosophila melanogaster}
Length = 78
Score = 23.6 bits (51), Expect = 9.8
Identities = 5/15 (33%), Positives = 8/15 (53%)
Query: 23 KDPRQWSESNVAQWL 37
K W+ S+V +W
Sbjct: 1 KAVYLWTVSDVLKWY 15
>3bs5_A Protein aveugle; sterIle alpha motif, SAM domain, SAM domain
dimer, SAM domain complex, cytoplasm, membrane; 2.00A
{Drosophila melanogaster}
Length = 106
Score = 24.2 bits (52), Expect = 9.9
Identities = 6/25 (24%), Positives = 11/25 (44%)
Query: 13 EKEQIRLNIVKDPRQWSESNVAQWL 37
K + + K W+ S+V +W
Sbjct: 11 NKTRTKTTRPKAVYLWTVSDVLKWY 35
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.323 0.132 0.422
Gapped
Lambda K H
0.267 0.0747 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,769,751
Number of extensions: 90129
Number of successful extensions: 315
Number of sequences better than 10.0: 1
Number of HSP's gapped: 303
Number of HSP's successfully gapped: 33
Length of query: 114
Length of database: 6,701,793
Length adjustment: 77
Effective length of query: 37
Effective length of database: 4,551,876
Effective search space: 168419412
Effective search space used: 168419412
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 51 (23.4 bits)