RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy15117
(114 letters)
>d2jv3a_ a.60.1.1 (A:) Ets-1 transcription factor pointed domain
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 110
Score = 131 bits (331), Expect = 9e-42
Identities = 55/94 (58%), Positives = 72/94 (76%)
Query: 1 MTEALKASFASWEKEQIRLNIVKDPRQWSESNVAQWLCWAIREFSLEGVTLHQFYMRGKD 60
M++ALKA+F+ + KEQ RL I KDPRQW+E++V W+ WA+ EFSL+GV +F M G
Sbjct: 17 MSQALKATFSGFTKEQQRLGIPKDPRQWTETHVRDWVMWAVNEFSLKGVDFQKFCMSGAA 76
Query: 61 ICSMGKESFLARAPPFMGDILWEHLEILQKANAK 94
+C++GKE FL AP F+GDILWEHLEILQK + K
Sbjct: 77 LCALGKECFLELAPDFVGDILWEHLEILQKEDVK 110
>d1sxda_ a.60.1.1 (A:) GABP-alpha subunit {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 91
Score = 116 bits (292), Expect = 4e-36
Identities = 34/85 (40%), Positives = 50/85 (58%), Gaps = 2/85 (2%)
Query: 7 ASFASWEKEQIRLNIVKDPRQWSESNVAQWLCWAIREFSLEGVTLHQFYMRGKDICSMGK 66
A+ + KEQ RL I DP WS V W+ W ++EFS+ + L + G+++CS+ +
Sbjct: 5 AALEGYRKEQERLGIPYDPIHWSTDQVLHWVVWVMKEFSMTDIDLTTLNISGRELCSLNQ 64
Query: 67 ESFLARAPPFMGDILWEHLEILQKA 91
E F R P G+ILW HLE+L+K
Sbjct: 65 EDFFQRVPR--GEILWSHLELLRKY 87
>d1sxea_ a.60.1.1 (A:) Transcriptional regulator ERG {Human (Homo
sapiens) [TaxId: 9606]}
Length = 97
Score = 104 bits (262), Expect = 2e-31
Identities = 28/80 (35%), Positives = 43/80 (53%), Gaps = 1/80 (1%)
Query: 13 EKEQIRLNIVKDPRQWSESNVAQWLCWAIREFSLEGVTLHQFY-MRGKDICSMGKESFLA 71
+ R+ + DP WS +V QWL WA++E+ L V + F + GK++C M K+ F
Sbjct: 15 TTNERRVIVPADPTLWSTDHVRQWLEWAVKEYGLPDVNILLFQNIDGKELCKMTKDDFQR 74
Query: 72 RAPPFMGDILWEHLEILQKA 91
P + DIL HL L++
Sbjct: 75 LTPSYNADILLSHLHYLRET 94
>d1sv0a_ a.60.1.1 (A:) Ets DNA-binding protein pokkuri (Yan)
{Fruit fly (Drosophila melanogaster) [TaxId: 7227]}
Length = 77
Score = 100 bits (251), Expect = 5e-30
Identities = 24/71 (33%), Positives = 37/71 (52%), Gaps = 1/71 (1%)
Query: 20 NIVKDPRQWSESNVAQWLCWAIREFSLEGVTLHQFYMRGKDICSMGKESFLARAPPFMGD 79
++ DPR WS +V +L + +REF L + F M GK +C + + F R P GD
Sbjct: 4 SLPSDPRLWSREDVLVFLRFCVREFDLPKLDFDLFQMNGKRLCLLTRADFGHRCPG-AGD 62
Query: 80 ILWEHLEILQK 90
+L L++L
Sbjct: 63 VLHNVLQMLII 73
>d1ji7a_ a.60.1.1 (A:) Etv6 transcription factor pointed domain
(Tel SAM) {Human (Homo sapiens) [TaxId: 9606]}
Length = 77
Score = 97.9 bits (244), Expect = 5e-29
Identities = 29/67 (43%), Positives = 38/67 (56%), Gaps = 1/67 (1%)
Query: 24 DPRQWSESNVAQWLCWAIREFSLEGVTLHQFYMRGKDICSMGKESFLARAPPFMGDILWE 83
P WS +VAQWL WA EFSL + + F M GK + + KE F R+ P GD L+E
Sbjct: 11 QPIYWSRDDVAQWLKWAENEFSLRPIDSNTFEMNGKALLLLTKEDFRYRS-PHSGDELYE 69
Query: 84 HLEILQK 90
L+ + K
Sbjct: 70 LLQHILK 76
>d1sv0c_ a.60.1.1 (C:) Modulator of the activity of Ets (MAE,
CG15085-PA) {Fruit fly (Drosophila melanogaster)
[TaxId: 7227]}
Length = 82
Score = 90.3 bits (224), Expect = 7e-26
Identities = 18/71 (25%), Positives = 31/71 (43%), Gaps = 3/71 (4%)
Query: 20 NIVKDPRQWSESNVAQWL--CWAIREFSLEGVTLHQFYMRGKDICSMGKESFLARAPPFM 77
+ DPR W+ ++V +WL + +F M GK +C M + +L R P
Sbjct: 6 GLPLDPRDWTRADVWKWLINMAVSEGLEVTAELPQKFPMNGKALCLMSLDMYLCRV-PVG 64
Query: 78 GDILWEHLEIL 88
G +L+ +
Sbjct: 65 GKMLYRDFRVR 75
>d1wwva1 a.60.1.2 (A:8-85) Connector enhancer of kinase suppressor
of Ras 1, CNK1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 78
Score = 25.4 bits (55), Expect = 0.92
Identities = 16/73 (21%), Positives = 32/73 (43%), Gaps = 4/73 (5%)
Query: 22 VKDPRQWSESNVAQWLCWAIREFSLEGVTLHQFYMRGKDICSMGKESFLARAPPFMGD-- 79
++ W+ VA WL + SL+ + + GK++ + +S A A +G
Sbjct: 1 MEPVETWTPGKVATWLRG--LDDSLQDYPFEDWQLPGKNLLQLCPQSLEALAVRSLGHQE 58
Query: 80 ILWEHLEILQKAN 92
++ +E LQ +
Sbjct: 59 LILGGVEQLQALS 71
>d1q6wa_ d.38.1.4 (A:) Monoamine oxidase regulatory protein
{Archaeon Archaeoglobus fulgidus [TaxId: 2234]}
Length = 151
Score = 25.1 bits (54), Expect = 2.1
Identities = 17/112 (15%), Positives = 40/112 (35%), Gaps = 2/112 (1%)
Query: 1 MTEALKASFASWEKEQIRLNIVKDPRQWS--ESNVAQWLCWAIREFSLEGVTLHQFYMRG 58
+TE +FA + L+ + + + +AQ + + + Y
Sbjct: 23 VTETDIWTFAYLTADFFPLHTDVEFAKKTIFGKPIAQGMLVLSIALGMVDQVILSNYDVS 82
Query: 59 KDICSMGKESFLARAPPFMGDILWEHLEILQKANAKGVAVATCRRHKMSDQN 110
I G + P F+GD + E+++K + + + ++ +Q
Sbjct: 83 SVIAFFGIKDVRFLRPVFIGDTIAASAEVVEKQDFDEKSGVVTYKLEVKNQR 134
>d1kcfa2 c.55.3.7 (A:39-256) Mitochondrial resolvase ydc2 catalytic
domain {Fission yeast (Schizosaccharomyces pombe)
[TaxId: 4896]}
Length = 218
Score = 24.6 bits (53), Expect = 2.7
Identities = 18/101 (17%), Positives = 31/101 (30%), Gaps = 2/101 (1%)
Query: 5 LKASFASWEKEQIRLNIVKDPRQWSESNVAQWLCWAIREFSLEGVTLHQFYMRGKDICSM 64
L + E+ +++ RQ S +A W +R LE + Y ++
Sbjct: 59 LSIQLFNTLHEKFNPHVILMERQRYRSGIATIPEWTLRVNMLESMLYALHYAEKRNSIEQ 118
Query: 65 -GKESFLARAPPFMGDILW-EHLEILQKANAKGVAVATCRR 103
+ FL P W L + K V +
Sbjct: 119 KIQYPFLLSLSPKSTYSYWASVLNTKASFSKKKSRVQMVKE 159
>d2d8ca1 a.60.1.2 (A:7-91) Sphingomyelin synthase 1, SMS1 {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 85
Score = 23.8 bits (51), Expect = 3.4
Identities = 7/18 (38%), Positives = 8/18 (44%)
Query: 23 KDPRQWSESNVAQWLCWA 40
K+ WS VA WL
Sbjct: 9 KEVVYWSPKKVADWLLEN 26
>d1d7pm_ b.18.1.2 (M:) C2 domain of factor VIII {Human (Homo
sapiens) [TaxId: 9606]}
Length = 159
Score = 24.0 bits (51), Expect = 4.5
Identities = 12/63 (19%), Positives = 19/63 (30%)
Query: 8 SFASWEKEQIRLNIVKDPRQWSESNVAQWLCWAIREFSLEGVTLHQFYMRGKDICSMGKE 67
FA+W + RL++ W + VT + SM +
Sbjct: 29 MFATWSPSKARLHLQGRSNAWRPQVNNPKEWLQVDFQKTMKVTGVTTQGVKSLLTSMYVK 88
Query: 68 SFL 70
FL
Sbjct: 89 EFL 91
>d2d1pb1 c.114.1.1 (B:1-119) tRNA 2-thiouridine synthesizing
protein C, TusC {Escherichia coli [TaxId: 562]}
Length = 119
Score = 23.0 bits (49), Expect = 8.9
Identities = 8/36 (22%), Positives = 14/36 (38%)
Query: 64 MGKESFLARAPPFMGDILWEHLEILQKANAKGVAVA 99
M + +F+ P E L+ L +A +A
Sbjct: 1 MKRIAFVFSTAPHGTAAGREGLDALLATSALTDDLA 36
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.323 0.132 0.422
Gapped
Lambda K H
0.267 0.0632 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 436,970
Number of extensions: 18002
Number of successful extensions: 84
Number of sequences better than 10.0: 1
Number of HSP's gapped: 78
Number of HSP's successfully gapped: 21
Length of query: 114
Length of database: 2,407,596
Length adjustment: 72
Effective length of query: 42
Effective length of database: 1,419,036
Effective search space: 59599512
Effective search space used: 59599512
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 47 (22.1 bits)