Query psy15118
Match_columns 132
No_of_seqs 120 out of 619
Neff 5.5
Searched_HMMs 29240
Date Fri Aug 16 21:03:22 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy15118.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/15118hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1tzy_C Histone H3; histone-fol 100.0 7.3E-55 2.5E-59 323.7 5.1 124 1-124 1-124 (136)
2 2yfv_A Histone H3-like centrom 100.0 2.6E-44 8.8E-49 255.0 5.2 91 37-127 2-97 (100)
3 3r45_A Histone H3-like centrom 100.0 4.4E-43 1.5E-47 264.7 4.6 100 22-123 38-140 (156)
4 3nqu_A Histone H3-like centrom 100.0 8.4E-43 2.9E-47 259.7 5.5 97 24-122 24-123 (140)
5 2hue_B Histone H3; mini beta s 100.0 1.5E-31 5.3E-36 181.5 5.0 63 60-122 1-63 (77)
6 3nqj_A Histone H3-like centrom 100.0 2.7E-31 9.1E-36 182.3 4.7 62 61-122 2-65 (82)
7 2l5a_A Histone H3-like centrom 100.0 3.5E-29 1.2E-33 199.3 6.1 63 60-122 9-74 (235)
8 2ly8_A Budding yeast chaperone 99.9 1.2E-26 4E-31 169.2 6.4 56 62-117 1-59 (121)
9 1b67_A Protein (histone HMFA); 99.7 1.2E-17 4.1E-22 109.3 4.2 61 63-128 3-63 (68)
10 1ku5_A HPHA, archaeal histon; 99.5 1.7E-14 6E-19 94.9 4.2 62 62-128 6-67 (70)
11 1n1j_A NF-YB; histone-like PAI 99.3 3.5E-13 1.2E-17 93.0 2.7 68 57-127 3-70 (93)
12 1tzy_B Histone H2B; histone-fo 98.8 1.4E-08 4.7E-13 74.2 6.2 59 64-122 34-92 (126)
13 2nqb_D Histone H2B; nucleosome 98.8 1.5E-08 5E-13 73.8 6.3 59 64-122 31-89 (123)
14 2r10_A Chromatin structure-rem 98.4 3.1E-08 1.1E-12 82.4 -0.1 50 3-52 3-52 (361)
15 1id3_B Histone H4; nucleosome 98.3 3.6E-07 1.2E-11 64.2 4.0 62 61-127 27-88 (102)
16 2hue_C Histone H4; mini beta s 98.3 6.6E-07 2.3E-11 60.6 3.9 62 61-127 9-70 (84)
17 1tzy_D Histone H4-VI; histone- 98.2 7.2E-07 2.4E-11 62.5 3.8 66 58-128 25-90 (103)
18 2yfw_B Histone H4, H4; cell cy 98.2 6.8E-07 2.3E-11 62.7 3.5 62 61-127 28-89 (103)
19 3b0c_T CENP-T, centromere prot 98.2 1.5E-06 5E-11 61.9 5.3 63 60-127 5-67 (111)
20 3b0c_W CENP-W, centromere prot 98.1 1.6E-06 5.4E-11 57.5 3.3 60 62-125 4-63 (76)
21 2jss_A Chimera of histone H2B. 98.1 5.3E-06 1.8E-10 63.8 6.5 59 64-122 1-59 (192)
22 1f1e_A Histone fold protein; a 98.1 2.4E-06 8.1E-11 64.2 4.1 66 57-127 77-142 (154)
23 1f1e_A Histone fold protein; a 97.9 3.7E-06 1.3E-10 63.1 2.1 61 63-127 5-65 (154)
24 3v9r_A MHF1, uncharacterized p 97.8 3.2E-05 1.1E-09 53.3 5.7 60 65-124 11-72 (90)
25 3b0b_B CENP-S, centromere prot 97.7 4E-05 1.4E-09 54.4 5.0 60 65-124 18-79 (107)
26 2byk_B Chrac-14; nucleosome sl 97.7 2.3E-05 7.8E-10 56.9 3.8 65 60-127 7-71 (128)
27 1jfi_B DR1 protein, transcript 97.7 3.2E-05 1.1E-09 59.3 4.0 67 57-127 10-76 (179)
28 3vh5_A CENP-S; histone fold, c 97.6 5.8E-05 2E-09 55.9 5.0 60 65-124 18-79 (140)
29 1taf_A TFIID TBP associated fa 97.6 7.5E-05 2.6E-09 49.0 5.0 58 70-128 5-62 (68)
30 4dra_A Centromere protein S; D 97.6 7.6E-05 2.6E-09 53.4 5.3 60 65-124 26-87 (113)
31 1taf_B TFIID TBP associated fa 97.5 0.00017 5.8E-09 47.5 4.8 58 62-124 6-63 (70)
32 4g92_C HAPE; transcription fac 97.1 0.00064 2.2E-08 48.5 5.1 68 60-128 36-103 (119)
33 2x4w_B Histone H3.2; transcrip 97.1 0.0002 6.9E-09 37.9 1.5 23 26-48 4-26 (26)
34 1n1j_B NF-YC; histone-like PAI 97.0 0.00096 3.3E-08 45.9 4.7 77 49-127 4-80 (97)
35 2ly8_A Budding yeast chaperone 96.5 0.0013 4.4E-08 47.5 2.8 46 82-127 62-107 (121)
36 1h3o_B Transcription initiatio 96.3 0.0089 3E-07 39.8 5.6 60 61-124 4-63 (76)
37 1jfi_A Transcription regulator 96.2 0.0065 2.2E-07 41.8 4.7 65 64-129 10-74 (98)
38 2byk_A Chrac-16; nucleosome sl 95.4 0.013 4.4E-07 43.0 3.6 62 64-126 18-80 (140)
39 2l5a_A Histone H3-like centrom 95.4 0.012 4E-07 46.8 3.6 47 81-127 175-221 (235)
40 3a1b_A DNA (cytosine-5)-methyl 90.8 0.048 1.7E-06 40.9 0.2 20 2-21 1-20 (159)
41 1tzy_A Histone H2A-IV; histone 90.5 0.2 6.9E-06 36.1 3.3 64 60-127 23-86 (129)
42 2f8n_G Core histone macro-H2A. 90.3 0.26 8.7E-06 35.1 3.6 64 60-127 20-83 (120)
43 3avr_B Histone H3; cupin super 89.3 0.16 5.6E-06 26.4 1.5 24 19-42 2-25 (26)
44 1f66_C Histone H2A.Z; nucleoso 88.5 0.28 9.6E-06 35.3 2.8 64 60-126 25-88 (128)
45 2nqb_C Histone H2A; nucleosome 88.1 0.71 2.4E-05 32.9 4.6 64 60-127 21-84 (123)
46 2f8n_K Histone H2A type 1; nuc 84.8 1 3.5E-05 33.3 4.1 64 60-127 42-105 (149)
47 1id3_C Histone H2A.1; nucleoso 84.5 0.92 3.1E-05 32.7 3.7 64 60-127 23-86 (131)
48 2jss_A Chimera of histone H2B. 82.0 0.58 2E-05 35.5 1.9 65 60-127 103-167 (192)
49 2chg_A Replication factor C sm 46.9 14 0.00049 25.4 2.9 49 82-130 178-226 (226)
50 1r4v_A Hypothetical protein AQ 41.3 54 0.0019 24.6 5.4 66 55-125 17-84 (171)
51 4dra_E Centromere protein X; D 39.6 78 0.0027 20.9 5.5 41 70-110 16-58 (84)
52 3b0b_C CENP-X, centromere prot 35.2 93 0.0032 20.3 5.5 42 70-111 12-55 (81)
53 1h3o_A Transcription initiatio 34.2 41 0.0014 21.8 3.4 52 63-115 3-54 (75)
54 3qb5_K Translin-associated pro 32.7 49 0.0017 26.3 4.3 37 71-107 100-138 (290)
55 1wwi_A Hypothetical protein TT 26.9 97 0.0033 22.6 4.7 58 63-125 3-60 (148)
56 1njg_A DNA polymerase III subu 22.2 88 0.003 21.4 3.6 47 81-129 201-250 (250)
57 2ctr_A DNAJ homolog subfamily 21.4 1.3E+02 0.0045 18.8 4.1 30 73-102 29-58 (88)
58 1kn1_B Allophycocyanin; helix- 20.4 1E+02 0.0034 22.3 3.7 58 46-103 79-143 (161)
No 1
>1tzy_C Histone H3; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1eqz_C 1hq3_C 2aro_C 2f8n_A 2hio_C 3av1_A 3lel_A 3afa_A 3azi_A 3azj_A 3azk_A 3azl_A 3azm_A 3azn_A 2cv5_A* 1u35_A* 2nqb_A 2io5_B 2pyo_A* 3c9k_C ...
Probab=100.00 E-value=7.3e-55 Score=323.69 Aligned_cols=124 Identities=94% Similarity=1.262 Sum_probs=81.2
Q ss_pred CCCccccccccCCCCCCcchhhhhhhccCCCCCCCCCCCcccCCCchhhHHHhhhhcccchhccccchhHHHHHHHhhhc
Q psy15118 1 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFK 80 (132)
Q Consensus 1 MARtK~~a~k~~g~kaprk~~a~k~~~k~~~~~~~~kk~~r~rpg~~al~EIr~~Qkst~llI~k~pF~rlVreI~~~~~ 80 (132)
||||||+|++++||++|++++++++++++.|..++.+++|||+||+++|+|||+||+||+|||||+||+||||||+++|.
T Consensus 1 MARtk~tarkstggkaprk~l~~k~a~k~~p~~~~~kk~~r~rpgt~alrEIr~yQkst~lLIpk~PF~RLVREI~~~~~ 80 (136)
T 1tzy_C 1 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFK 80 (136)
T ss_dssp -----------------------------------------CCHHHHHHHHHHHHHHCCSCCSCHHHHHHHHHHHHHHHC
T ss_pred CCCCccccccCCCCCCCCccccccccccCCCCCCCCCCCCCCCCchhHHHHHHHhhcchhhhhccchHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccHHHHHHHHHHHHHHHHHhhhhhhHhhhccCcceeeehh
Q psy15118 81 TDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRMIASLVS 124 (132)
Q Consensus 81 ~~~r~~~~Al~aLQeaaE~~Lv~lfe~a~l~a~HakRvTi~~~~ 124 (132)
+|+|||++||++|||++|+|||+||||+|+||+|+||||||..|
T Consensus 81 ~~~R~q~~Al~aLQeaaEayLv~Lfeda~l~A~HAkRvTi~~kD 124 (136)
T 1tzy_C 81 TDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKD 124 (136)
T ss_dssp TTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHH
T ss_pred hhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCcHHh
Confidence 99999999999999999999999999999999999999999833
No 2
>2yfv_A Histone H3-like centromeric protein CSE4; cell cycle, kinetochore, centromere, histone chaperone, BUDD; 2.32A {Kluyveromyces lactis nrrl y-1140} PDB: 2yfw_A
Probab=100.00 E-value=2.6e-44 Score=255.04 Aligned_cols=91 Identities=57% Similarity=0.890 Sum_probs=59.6
Q ss_pred CCCcccCCCchhhHHHhhhhcccchhccccchhHHHHHHHhhhcc---cccccHHHHHHHHHHHHHHHHHhhhhhhHhhh
Q psy15118 37 KKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKT---DLRFQSSAVMALQEASEAYLVGLFEDTNLCAI 113 (132)
Q Consensus 37 kk~~r~rpg~~al~EIr~~Qkst~llI~k~pF~rlVreI~~~~~~---~~r~~~~Al~aLQeaaE~~Lv~lfe~a~l~a~ 113 (132)
+++|||+||+++|+|||+||+||++||||+||+||||||++++.+ ++|||++|++|||||+|+|||+||||+|+||+
T Consensus 2 ~~~~r~rpgt~alrEIr~yQkst~llIpk~PF~RLVREI~~~~~~~~~~~R~q~~Al~ALQeaaEayLv~Lfeda~l~A~ 81 (100)
T 2yfv_A 2 ARGTRYKPTDLALAEIRKYQRSTDLLISRMPFARLVKEVTDQFTTESEPLRWQSMAIMALQEASEAYLVGLLEHTNLLAL 81 (100)
T ss_dssp --------------------------CCHHHHHHHHHHHHHTTC-----CEECHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCcchHHHHHHhhcccchhhhccccHHHHHHHHHHHhccccchhhccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 568999999999999999999999999999999999999999976 89999999999999999999999999999999
Q ss_pred ccCcceeee--hhhcc
Q psy15118 114 HAKRMIASL--VSLVG 127 (132)
Q Consensus 114 HakRvTi~~--~~~~~ 127 (132)
||||||||. +.|+.
T Consensus 82 HAkRvTi~~kDiqLa~ 97 (100)
T 2yfv_A 82 HAKRITIMRKDMQLAR 97 (100)
T ss_dssp HTTCSEECHHHHHHHH
T ss_pred HcCCccCCHHHHHHHH
Confidence 999999998 44443
No 3
>3r45_A Histone H3-like centromeric protein A; histone fold, centromere, CENP-A, histone chaperone, hjurp; 2.60A {Homo sapiens}
Probab=100.00 E-value=4.4e-43 Score=264.72 Aligned_cols=100 Identities=48% Similarity=0.712 Sum_probs=62.1
Q ss_pred hhhhhccCCCCCCCCCCC-cccCCCchhhHHHhhhhcccchhccccchhHHHHHHHhhhc--ccccccHHHHHHHHHHHH
Q psy15118 22 ATKAARKSAPATGGVKKP-HRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFK--TDLRFQSSAVMALQEASE 98 (132)
Q Consensus 22 a~k~~~k~~~~~~~~kk~-~r~rpg~~al~EIr~~Qkst~llI~k~pF~rlVreI~~~~~--~~~r~~~~Al~aLQeaaE 98 (132)
+++++++++|..|+++++ +||+||+ |+|||+||+||+|||||+||+||||||+++|. .++|||++||+|||||+|
T Consensus 38 ~~~aa~ksap~~g~~~~~~~r~rpg~--LrEIR~yQkSteLLIpKlPF~RLVREIa~~~~~~~~lRfqs~Al~ALQEAaE 115 (156)
T 3r45_A 38 PTPGPSRRGPSLGASSHQHSRRRQGW--LKEIRKLQKSTHLLIRKLPFSRLAREICVKFTRGVDFNWQAQALLALQEAAE 115 (156)
T ss_dssp ---------------------------------------CCCSCHHHHHHHHHHHHHTTTTTCCCEEEHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCch--HHHHHHhccccccccccccHHHHHHHHHHHhccCccceecHHHHHHHHHHHH
Confidence 567788899988887766 7899998 99999999999999999999999999999997 589999999999999999
Q ss_pred HHHHHhhhhhhHhhhccCcceeeeh
Q psy15118 99 AYLVGLFEDTNLCAIHAKRMIASLV 123 (132)
Q Consensus 99 ~~Lv~lfe~a~l~a~HakRvTi~~~ 123 (132)
+|||+||||+|+||+||||||||.-
T Consensus 116 ayLV~LFEdanLcAiHAkRVTIm~k 140 (156)
T 3r45_A 116 AFLVHLFEDAYLLTLHAGRVTLFPK 140 (156)
T ss_dssp HHHHHHHHHHHHHHHHHTCSEECHH
T ss_pred HHHHHHHHHHHHHHHHcCcccccHH
Confidence 9999999999999999999999983
No 4
>3nqu_A Histone H3-like centromeric protein A; alpha helix, histone fold, centromere, DNA binding protein; 2.50A {Homo sapiens} PDB: 3an2_A
Probab=100.00 E-value=8.4e-43 Score=259.71 Aligned_cols=97 Identities=49% Similarity=0.751 Sum_probs=61.7
Q ss_pred hhhccCCCCCCCCCCCc-ccCCCchhhHHHhhhhcccchhccccchhHHHHHHHhhhc--ccccccHHHHHHHHHHHHHH
Q psy15118 24 KAARKSAPATGGVKKPH-RYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFK--TDLRFQSSAVMALQEASEAY 100 (132)
Q Consensus 24 k~~~k~~~~~~~~kk~~-r~rpg~~al~EIr~~Qkst~llI~k~pF~rlVreI~~~~~--~~~r~~~~Al~aLQeaaE~~ 100 (132)
+++++++|..|++++++ ||+||+ |+|||+||+||+|||||+||+||||||+++|. .++|||++||+|||||+|+|
T Consensus 24 ~aa~~~~~~~g~~~~~~~r~rpg~--LrEIR~yQkst~LLIpKlPF~RLVREI~~~~~~~~~~Rfq~~Al~ALQEAaEay 101 (140)
T 3nqu_A 24 PGPSRRGPSLGASSHQHSRRRQGW--LKEIRKLQKSTHLLIRKLPFSRLAREICVKFTRGVDFNWQAQALLALQEAAEAF 101 (140)
T ss_dssp -------------------------------------CCCSCTTHHHHHHHHHHHHHHTTCCCEECHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCCCCCCCCCCCcc--HHHHHHhccccccccccccHHHHHHHHHHHhcccccceecHHHHHHHHHHHHHH
Confidence 56788888888776655 899998 99999999999999999999999999999997 58999999999999999999
Q ss_pred HHHhhhhhhHhhhccCcceeee
Q psy15118 101 LVGLFEDTNLCAIHAKRMIASL 122 (132)
Q Consensus 101 Lv~lfe~a~l~a~HakRvTi~~ 122 (132)
||+||||+|+||+||||||||.
T Consensus 102 Lv~LFEdanlcAiHAkRVTIm~ 123 (140)
T 3nqu_A 102 LVHLFEDAYLLTLHAGRVTLFP 123 (140)
T ss_dssp HHHHHHHHHHHHHHTTCSEECH
T ss_pred HHHHHHHHHHHHHHcCcccccH
Confidence 9999999999999999999998
No 5
>2hue_B Histone H3; mini beta sheet, elongated beta sandwhich, DNA binding prote; 1.70A {Xenopus laevis}
Probab=99.97 E-value=1.5e-31 Score=181.55 Aligned_cols=63 Identities=87% Similarity=1.151 Sum_probs=61.2
Q ss_pred chhccccchhHHHHHHHhhhcccccccHHHHHHHHHHHHHHHHHhhhhhhHhhhccCcceeee
Q psy15118 60 ELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRMIASL 122 (132)
Q Consensus 60 ~llI~k~pF~rlVreI~~~~~~~~r~~~~Al~aLQeaaE~~Lv~lfe~a~l~a~HakRvTi~~ 122 (132)
+++|||+||+||||||++++.+++|||++|+++|||++|+|||+||||+|+||+|+|||||+.
T Consensus 1 ~lli~k~PF~RLVRei~~~~~~~~R~q~~Al~aLQea~Eaylv~lfeda~l~A~HAkRvTi~~ 63 (77)
T 2hue_B 1 MALIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVALFEDTNLCAIHAKRVTIMP 63 (77)
T ss_dssp -CCSCHHHHHHHHHHHHHTTCSSCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECH
T ss_pred CCccccchHHHHHHHHHHHcCccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCcH
Confidence 479999999999999999999999999999999999999999999999999999999999998
No 6
>3nqj_A Histone H3-like centromeric protein A; alpha helix, histone fold, centromere, DNA binding protein; 2.10A {Homo sapiens}
Probab=99.97 E-value=2.7e-31 Score=182.27 Aligned_cols=62 Identities=55% Similarity=0.819 Sum_probs=60.4
Q ss_pred hhccccchhHHHHHHHhhhc--ccccccHHHHHHHHHHHHHHHHHhhhhhhHhhhccCcceeee
Q psy15118 61 LLIRKLPFQRLVREIAQDFK--TDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRMIASL 122 (132)
Q Consensus 61 llI~k~pF~rlVreI~~~~~--~~~r~~~~Al~aLQeaaE~~Lv~lfe~a~l~a~HakRvTi~~ 122 (132)
|||||+||+||||||.+++. .++|||++|+++||||+|+|||+||||+|+||+||||||||.
T Consensus 2 lLI~klPF~RLVREI~~~~~~~~~~R~q~~Al~aLQea~E~ylv~Lfeda~lcAiHAkRvTi~~ 65 (82)
T 3nqj_A 2 LLIRKLPFSRLAREICVKFTRGVDFNWQAQALLALQEAAEAFLVHLFEDAYLLTLHAGRVTLFP 65 (82)
T ss_dssp CSSCHHHHHHHHHHHHHHHHSSCCCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCH
T ss_pred CCcccccHHHHHHHHHHHhccCccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCcH
Confidence 78999999999999999997 689999999999999999999999999999999999999998
No 7
>2l5a_A Histone H3-like centromeric protein CSE4, protein histone H4; A single chain of CSE4+SCM3+H4, fusion protein; NMR {Saccharomyces cerevisiae}
Probab=99.95 E-value=3.5e-29 Score=199.34 Aligned_cols=63 Identities=65% Similarity=0.962 Sum_probs=59.7
Q ss_pred chhccccchhHHHHHHHhhhcc---cccccHHHHHHHHHHHHHHHHHhhhhhhHhhhccCcceeee
Q psy15118 60 ELLIRKLPFQRLVREIAQDFKT---DLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRMIASL 122 (132)
Q Consensus 60 ~llI~k~pF~rlVreI~~~~~~---~~r~~~~Al~aLQeaaE~~Lv~lfe~a~l~a~HakRvTi~~ 122 (132)
.+||||+||+||||||++++.+ ++|||++||.|||||+|+|||+||||+|+||+||||||||.
T Consensus 9 ~~lI~KlPFqRLVREIaq~~~~~~~~lRfqs~Al~ALQEAaEayLV~LFEd~nLcaiHAkRVTim~ 74 (235)
T 2l5a_A 9 KLLISKIPFARLVKEVTDEFTTKDQDLRWQSMAIMALQEASEAYLVGLLEHTNLLALHAKRITIMK 74 (235)
T ss_dssp --CCSCCHHHHHHHHHHHTSCGGGTTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTTSGGGT
T ss_pred cccccCccHHHHHHHHHHHhccCCccceecHHHHHHHHHHHHHHHHHHHhhhHHHHhcccccccch
Confidence 4899999999999999999975 89999999999999999999999999999999999999998
No 8
>2ly8_A Budding yeast chaperone SCM3; centromere protein, CENH3 variants, partially unfolded; NMR {Saccharomyces cerevisiae}
Probab=99.93 E-value=1.2e-26 Score=169.20 Aligned_cols=56 Identities=66% Similarity=0.982 Sum_probs=53.5
Q ss_pred hccccchhHHHHHHHhhhcc---cccccHHHHHHHHHHHHHHHHHhhhhhhHhhhccCc
Q psy15118 62 LIRKLPFQRLVREIAQDFKT---DLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKR 117 (132)
Q Consensus 62 lI~k~pF~rlVreI~~~~~~---~~r~~~~Al~aLQeaaE~~Lv~lfe~a~l~a~HakR 117 (132)
||||+||+||||||++++.+ ++|||++||.|||||+|+|||+||||+|+||+||.|
T Consensus 1 LI~klPF~RLVREI~~~~~~~~~~lRfq~~Al~ALQeAsEayLV~lFEd~nlcaiHA~~ 59 (121)
T 2ly8_A 1 LISKIPFARLVKEVTDEFTTKDQDLRWQSMAIMALQEASEAYLVGLLEHTNLLALHLVP 59 (121)
T ss_dssp CCSCCHHHHHHHHHHHHHTTCCSSCCBCHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCC
T ss_pred CCCccchHHHHHHHHHHhcCCCCCccccHHHHHHHHHHHHHHHHHHHHHHhHHHHcCCc
Confidence 69999999999999999976 899999999999999999999999999999999844
No 9
>1b67_A Protein (histone HMFA); DNA binding protein; 1.48A {Methanothermus fervidus} SCOP: a.22.1.2 PDB: 1hta_A 1a7w_A 1b6w_A 1bfm_A
Probab=99.69 E-value=1.2e-17 Score=109.30 Aligned_cols=61 Identities=18% Similarity=0.156 Sum_probs=56.9
Q ss_pred ccccchhHHHHHHHhhhcccccccHHHHHHHHHHHHHHHHHhhhhhhHhhhccCcceeeehhhccc
Q psy15118 63 IRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRMIASLVSLVGG 128 (132)
Q Consensus 63 I~k~pF~rlVreI~~~~~~~~r~~~~Al~aLQeaaE~~Lv~lfe~a~l~a~HakRvTi~~~~~~~~ 128 (132)
||++||+|+++++ ++.+|+.+|+.+||+++|.|++.||+|||.||.|+||+||+-.|..+-
T Consensus 3 lP~a~v~Ri~k~~-----~~~ris~~A~~~l~~a~e~fi~~l~~~A~~~a~~~kRkTI~~~Di~~A 63 (68)
T 1b67_A 3 LPIAPIGRIIKNA-----GAERVSDDARIALAKVLEEMGEEIASEAVKLAKHAGRKTIKAEDIELA 63 (68)
T ss_dssp SCHHHHHHHHHHT-----TCSEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHH
T ss_pred CCccHHHHHHhcC-----CcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHH
Confidence 7999999999998 579999999999999999999999999999999999999998766543
No 10
>1ku5_A HPHA, archaeal histon; histone fold, DNA binding protein; 2.30A {Pyrococcus horikoshii} SCOP: a.22.1.2
Probab=99.49 E-value=1.7e-14 Score=94.91 Aligned_cols=62 Identities=23% Similarity=0.239 Sum_probs=57.0
Q ss_pred hccccchhHHHHHHHhhhcccccccHHHHHHHHHHHHHHHHHhhhhhhHhhhccCcceeeehhhccc
Q psy15118 62 LIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRMIASLVSLVGG 128 (132)
Q Consensus 62 lI~k~pF~rlVreI~~~~~~~~r~~~~Al~aLQeaaE~~Lv~lfe~a~l~a~HakRvTi~~~~~~~~ 128 (132)
.||+.||.|++|+. +..+|+++|+++|||++|.|++.+++||+.+|.|+||.||+..|..+.
T Consensus 6 ~lp~a~v~Rl~r~~-----g~~ris~~a~~~l~e~~~~~~~~v~~dA~~~a~hakRkTI~~~DV~lA 67 (70)
T 1ku5_A 6 ELPIAPVDRLIRKA-----GAERVSEQAAKVLAEYLEEYAIEIAKKAVEFARHAGRKTVKVEDIKLA 67 (70)
T ss_dssp CSCHHHHHHHHHHT-----TCSEECHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCSEECHHHHHHH
T ss_pred cCChHHHHHHHHHc-----CcceeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCHHHHHHH
Confidence 48999999999986 578999999999999999999999999999999999999998776553
No 11
>1n1j_A NF-YB; histone-like PAIR, DNA binding protein; 1.67A {Homo sapiens} SCOP: a.22.1.3
Probab=99.34 E-value=3.5e-13 Score=93.05 Aligned_cols=68 Identities=9% Similarity=0.122 Sum_probs=58.8
Q ss_pred cccchhccccchhHHHHHHHhhhcccccccHHHHHHHHHHHHHHHHHhhhhhhHhhhccCcceeeehhhcc
Q psy15118 57 KSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRMIASLVSLVG 127 (132)
Q Consensus 57 kst~llI~k~pF~rlVreI~~~~~~~~r~~~~Al~aLQeaaE~~Lv~lfe~a~l~a~HakRvTi~~~~~~~ 127 (132)
+++++.+|++++.|+++++.. ++.+|+.+|..+||+++|.|+..|+++|+.||.|++|.||+-.|+..
T Consensus 3 ~~~d~~LP~a~i~ri~K~~~~---~~~~is~dA~~~l~~a~e~Fi~~l~~~A~~~a~~~kRkTI~~~Dv~~ 70 (93)
T 1n1j_A 3 REQDIYLPIANVARIMKNAIP---QTGKIAKDAKECVQECVSEFISFITSEASERCHQEKRKTINGEDILF 70 (93)
T ss_dssp ----CCCCHHHHHHHHHHTSC---TTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHH
T ss_pred CcccccCChhHHHHHHHHhCC---ccceeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHH
Confidence 356789999999999999854 46899999999999999999999999999999999999999866554
No 12
>1tzy_B Histone H2B; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1eqz_B 1hq3_B 2aro_B 2hio_B 3c9k_B 3azg_D 3a6n_D 3an2_D 3av1_D 3av2_D 3ayw_D 3aze_D 3azf_D 3afa_D 3azh_D 3azi_D 3azj_D 3azk_D 3azl_D 3azm_D ...
Probab=98.76 E-value=1.4e-08 Score=74.20 Aligned_cols=59 Identities=15% Similarity=0.136 Sum_probs=57.6
Q ss_pred cccchhHHHHHHHhhhcccccccHHHHHHHHHHHHHHHHHhhhhhhHhhhccCcceeee
Q psy15118 64 RKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRMIASL 122 (132)
Q Consensus 64 ~k~pF~rlVreI~~~~~~~~r~~~~Al~aLQeaaE~~Lv~lfe~a~l~a~HakRvTi~~ 122 (132)
++.+|..||+.|+.++++|.+++..|+..|+...+|++.++-.+|..++.|+||.||++
T Consensus 34 ~~esy~~YIyKVLKQVhpd~gISskAm~ImnSfvnDiferIA~EAs~La~~nkr~Tits 92 (126)
T 1tzy_B 34 RKESYSIYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITS 92 (126)
T ss_dssp CCCCCHHHHHHHHHHHCTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECH
T ss_pred ccccHHHHHHHHHHHhCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCH
Confidence 67889999999999999999999999999999999999999999999999999999988
No 13
>2nqb_D Histone H2B; nucleosome, NCP, chromatin, structural protein/DNA complex; 2.30A {Drosophila melanogaster} PDB: 2pyo_D*
Probab=98.75 E-value=1.5e-08 Score=73.76 Aligned_cols=59 Identities=14% Similarity=0.141 Sum_probs=57.5
Q ss_pred cccchhHHHHHHHhhhcccccccHHHHHHHHHHHHHHHHHhhhhhhHhhhccCcceeee
Q psy15118 64 RKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRMIASL 122 (132)
Q Consensus 64 ~k~pF~rlVreI~~~~~~~~r~~~~Al~aLQeaaE~~Lv~lfe~a~l~a~HakRvTi~~ 122 (132)
++.+|..||+.|+.++++|.+++..|+..|+...+|++.++-.+|..++.|+||.||++
T Consensus 31 ~~esy~~YIyKVLKQVhpd~gISskAm~ImnSfvnDiferIA~EAs~La~~nkr~Tits 89 (123)
T 2nqb_D 31 RKESYAIYIYTVLKQVHPDTGISSKAMSIMNSFVNDIFERIAAEASRLAHYNKRSTITS 89 (123)
T ss_dssp CCCCSHHHHHHHHHHHCTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEECH
T ss_pred ccchHHHHHHHHHHHhCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCH
Confidence 67889999999999999999999999999999999999999999999999999999988
No 14
>2r10_A Chromatin structure-remodeling complex protein RSC4, linker, histone H3; bromodomain, remodeler, acetylation, transcription; HET: ALY; 2.20A {Saccharomyces cerevisiae} PDB: 2r0v_A*
Probab=98.41 E-value=3.1e-08 Score=82.42 Aligned_cols=50 Identities=42% Similarity=0.525 Sum_probs=12.4
Q ss_pred CccccccccCCCCCCcchhhhhhhccCCCCCCCCCCCcccCCCchhhHHH
Q psy15118 3 RTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREI 52 (132)
Q Consensus 3 RtK~~a~k~~g~kaprk~~a~k~~~k~~~~~~~~kk~~r~rpg~~al~EI 52 (132)
||||+|++++||++|++++++++++++.+..++.+++||++||++++.|.
T Consensus 3 ~tk~tarkstggkaprk~~~~k~~rk~~~~~~~~kkp~R~rPGt~a~~e~ 52 (361)
T 2r10_A 3 DPFTTARKSTGGKAPRKGGMVVKKRKLATEAGGSDERPKYLPGKHPKNQE 52 (361)
T ss_dssp ------------------------------------CCSSCCSCCBCCCS
T ss_pred cccccccCCCCCCCCCccccccccCCCCCCCCCCCCCcccCCCccccccc
Confidence 79999999999999999999999988888788889999999999997664
No 15
>1id3_B Histone H4; nucleosome core particle, chromatin, protein/DNA interaction, nucleoprotein, supercoiled DNA; 3.10A {Saccharomyces cerevisiae} SCOP: a.22.1.1
Probab=98.33 E-value=3.6e-07 Score=64.19 Aligned_cols=62 Identities=21% Similarity=0.200 Sum_probs=54.6
Q ss_pred hhccccchhHHHHHHHhhhcccccccHHHHHHHHHHHHHHHHHhhhhhhHhhhccCcceeeehhhcc
Q psy15118 61 LLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRMIASLVSLVG 127 (132)
Q Consensus 61 llI~k~pF~rlVreI~~~~~~~~r~~~~Al~aLQeaaE~~Lv~lfe~a~l~a~HakRvTi~~~~~~~ 127 (132)
.-||+.+..||++.. ...+++.+|.++|++..|.|+..+.+||..+|-|++|-||+..|.++
T Consensus 27 ~~ip~~~I~Rlar~~-----Gv~rIS~da~~~l~~~le~fi~~I~~dA~~~a~HakRKTVt~~DV~~ 88 (102)
T 1id3_B 27 QGITKPAIRRLARRG-----GVKRISGLIYEEVRAVLKSFLESVIRDSVTYTEHAKRKTVTSLDVVY 88 (102)
T ss_dssp GGSCHHHHHHHHHHT-----TCCEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHH
T ss_pred CCCCHHHHHHHHHHc-----CchhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCcHHHHHH
Confidence 458999988888664 35799999999999999999999999999999999999999866543
No 16
>2hue_C Histone H4; mini beta sheet, elongated beta sandwhich, DNA binding prote; 1.70A {Xenopus laevis} SCOP: a.22.1.1 PDB: 3nqj_B 1aoi_B 3kwq_B* 1hio_D 2yfv_B
Probab=98.26 E-value=6.6e-07 Score=60.56 Aligned_cols=62 Identities=21% Similarity=0.173 Sum_probs=54.1
Q ss_pred hhccccchhHHHHHHHhhhcccccccHHHHHHHHHHHHHHHHHhhhhhhHhhhccCcceeeehhhcc
Q psy15118 61 LLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRMIASLVSLVG 127 (132)
Q Consensus 61 llI~k~pF~rlVreI~~~~~~~~r~~~~Al~aLQeaaE~~Lv~lfe~a~l~a~HakRvTi~~~~~~~ 127 (132)
.-||+.+..|+.+.. ...+++.+|.++|++..|.|+..+.+||..+|-|++|-||+..|.+.
T Consensus 9 ~~ip~~~I~Riar~~-----Gv~rIs~da~~~l~~~l~~~~~~I~~dA~~~a~ha~RKTvt~~DV~~ 70 (84)
T 2hue_C 9 QGITKPAIRRLARRG-----GVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVY 70 (84)
T ss_dssp CSSCHHHHHHHHHHT-----TCCEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHH
T ss_pred CCCCHHHHHHHHHHc-----CchhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCcHHHHHH
Confidence 458999888887654 35799999999999999999999999999999999999999866554
No 17
>1tzy_D Histone H4-VI; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1f66_B 1eqz_D 1hq3_D 1u35_B 2aro_D 2cv5_B* 2f8n_B 3nqu_B 3r45_B 3azg_B 3a6n_B 3an2_B 3av1_B 3av2_B 3ayw_B 3aze_B 3azf_B 3afa_B 3azh_B 3azk_B ...
Probab=98.24 E-value=7.2e-07 Score=62.50 Aligned_cols=66 Identities=20% Similarity=0.157 Sum_probs=55.6
Q ss_pred ccchhccccchhHHHHHHHhhhcccccccHHHHHHHHHHHHHHHHHhhhhhhHhhhccCcceeeehhhccc
Q psy15118 58 STELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRMIASLVSLVGG 128 (132)
Q Consensus 58 st~llI~k~pF~rlVreI~~~~~~~~r~~~~Al~aLQeaaE~~Lv~lfe~a~l~a~HakRvTi~~~~~~~~ 128 (132)
+..--||+.+..||.+.. ...|++.+|.+.|++..|.|+..+.+||..+|-|++|-||+..|.++-
T Consensus 25 ~~~~gip~~~I~Rlar~~-----G~~rIs~~a~~~l~~vle~~~~~V~~dA~~~a~hakRktIt~~DV~~A 90 (103)
T 1tzy_D 25 DNIQGITKPAIRRLARRG-----GVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYA 90 (103)
T ss_dssp CGGGGSCHHHHHHHHHHT-----TCCEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHH
T ss_pred hhcccCCHHHHHHHHHHc-----CccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCHHHHHHH
Confidence 333448999888887654 236999999999999999999999999999999999999999776653
No 18
>2yfw_B Histone H4, H4; cell cycle, kinetochore, centromere, histone chaperone, BUDD; 2.60A {Kluyveromyces lactis nrrl y-1140}
Probab=98.23 E-value=6.8e-07 Score=62.66 Aligned_cols=62 Identities=21% Similarity=0.198 Sum_probs=53.3
Q ss_pred hhccccchhHHHHHHHhhhcccccccHHHHHHHHHHHHHHHHHhhhhhhHhhhccCcceeeehhhcc
Q psy15118 61 LLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRMIASLVSLVG 127 (132)
Q Consensus 61 llI~k~pF~rlVreI~~~~~~~~r~~~~Al~aLQeaaE~~Lv~lfe~a~l~a~HakRvTi~~~~~~~ 127 (132)
--||+.+..||.+.. ...|++.+|.+.|++..|.|+..+.+||..+|-|++|-||+..|.++
T Consensus 28 ~gip~~~I~Rlar~~-----G~~rIs~~a~~~l~~vle~~~~~V~~dA~~~a~hakRktvt~~DV~~ 89 (103)
T 2yfw_B 28 QGITKPAIRRLARRG-----GVKRISGLIYEEVRNVLKTFLESVIRDAVTYTEHAKRKTVTSLDVVY 89 (103)
T ss_dssp --CCHHHHHHHHHHT-----TCCEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHH
T ss_pred ccCCHHHHHHHHHHc-----CccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCcHHHHHH
Confidence 348999988887654 23699999999999999999999999999999999999999977654
No 19
>3b0c_T CENP-T, centromere protein T; histone fold, DNA binding, DNA binding protein; HET: CIT; 2.20A {Gallus gallus} PDB: 3b0d_T* 3vh5_T 3vh6_T
Probab=98.23 E-value=1.5e-06 Score=61.90 Aligned_cols=63 Identities=16% Similarity=0.163 Sum_probs=51.2
Q ss_pred chhccccchhHHHHHHHhhhcccccccHHHHHHHHHHHHHHHHHhhhhhhHhhhccCcceeeehhhcc
Q psy15118 60 ELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRMIASLVSLVG 127 (132)
Q Consensus 60 ~llI~k~pF~rlVreI~~~~~~~~r~~~~Al~aLQeaaE~~Lv~lfe~a~l~a~HakRvTi~~~~~~~ 127 (132)
++-||+..-.||+++- ...+++.+|.++|+++++.|+..+..|++..|-|++|-||+..|.++
T Consensus 5 d~~lP~a~I~Ri~r~~-----g~~rIS~~a~~~l~e~l~~f~~~v~~da~~~A~HA~RKTV~~eDV~l 67 (111)
T 3b0c_T 5 EPEIASSLIKQIFSHY-----VKTPVTRDAYKIVEKCSERYFKQISSDLEAYSQHAGRKTVEMADVEL 67 (111)
T ss_dssp -----CHHHHHHHHHH-----HCSCBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHH
T ss_pred CCCCCHHHHHHHHHHC-----CCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCHHHHHH
Confidence 4568888777776555 46899999999999999999999999999999999999999866554
No 20
>3b0c_W CENP-W, centromere protein W; histone fold, DNA binding, DNA binding protein; HET: CIT; 2.20A {Gallus gallus} PDB: 3b0d_W* 3vh5_W 3vh6_W
Probab=98.12 E-value=1.6e-06 Score=57.53 Aligned_cols=60 Identities=13% Similarity=0.191 Sum_probs=53.1
Q ss_pred hccccchhHHHHHHHhhhcccccccHHHHHHHHHHHHHHHHHhhhhhhHhhhccCcceeeehhh
Q psy15118 62 LIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRMIASLVSL 125 (132)
Q Consensus 62 lI~k~pF~rlVreI~~~~~~~~r~~~~Al~aLQeaaE~~Lv~lfe~a~l~a~HakRvTi~~~~~ 125 (132)
.+|+++..|+++++. ++.+++.+|.++|++++|.|+..|-.+|+..+.|.+|-||+..|.
T Consensus 4 ~LP~A~V~rI~K~~~----p~~~is~~A~~~i~~~~~~Fi~~la~eA~~~a~~~~rKTI~~~dI 63 (76)
T 3b0c_W 4 TVPRGTLRKIIKKHK----PHLRLAANTDLLVHLSFLLFLHRLAEEARTNAFENKSKIIKPEHT 63 (76)
T ss_dssp CCCHHHHHHHHHHHC----TTCEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSBCHHHH
T ss_pred cccccHHHHHHHHhC----CCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHH
Confidence 478888888877665 478999999999999999999999999999999999999987544
No 21
>2jss_A Chimera of histone H2B.1 and histone H2A.Z; histone/chaperone complex, intrinsically unfolded protein, chaperone/structural protein complex; NMR {Saccharomyces cerevisiae} SCOP: a.22.1.1 a.22.1.1
Probab=98.11 E-value=5.3e-06 Score=63.83 Aligned_cols=59 Identities=12% Similarity=0.142 Sum_probs=56.5
Q ss_pred cccchhHHHHHHHhhhcccccccHHHHHHHHHHHHHHHHHhhhhhhHhhhccCcceeee
Q psy15118 64 RKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRMIASL 122 (132)
Q Consensus 64 ~k~pF~rlVreI~~~~~~~~r~~~~Al~aLQeaaE~~Lv~lfe~a~l~a~HakRvTi~~ 122 (132)
++.+|..+++.|+.++++|.+++.+||..|....++++.++-.+|..++.|++|.||+.
T Consensus 1 ~~~~~~~yi~kvLkqv~p~~~iS~~Am~~m~s~v~di~~rIa~eA~~L~~~~~r~Tit~ 59 (192)
T 2jss_A 1 RKETYSSYIYKVLKQTHPDTGISQKSMSILNSFVNDIFERIATEASKLAAYNKKSTISA 59 (192)
T ss_dssp CCSTTHHHHHHHHHHHCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCSCCH
T ss_pred CcchHHHHHHHHHcccCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCH
Confidence 46789999999999999999999999999999999999999999999999999999977
No 22
>1f1e_A Histone fold protein; archaeal histone protein, DNA binding protein; HET: MSE; 1.37A {Methanopyrus kandleri} SCOP: a.22.1.2
Probab=98.09 E-value=2.4e-06 Score=64.15 Aligned_cols=66 Identities=15% Similarity=-0.020 Sum_probs=59.3
Q ss_pred cccchhccccchhHHHHHHHhhhcccccccHHHHHHHHHHHHHHHHHhhhhhhHhhhccCcceeeehhhcc
Q psy15118 57 KSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRMIASLVSLVG 127 (132)
Q Consensus 57 kst~llI~k~pF~rlVreI~~~~~~~~r~~~~Al~aLQeaaE~~Lv~lfe~a~l~a~HakRvTi~~~~~~~ 127 (132)
...++.||+.|..|+.|+- ...|++.+|-+.|+++.|.|+..+.++|+..|.|++|.||+-.|.+.
T Consensus 77 d~~~l~lP~a~V~Ri~k~~-----g~~RVS~~A~~~l~~~le~f~~~I~~~A~~~a~ha~RKTIt~eDV~~ 142 (154)
T 1f1e_A 77 DYDGELFGRATVRRILKRA-----GIERASSDAVDLYNKLICRATEELGEKAAEYADEDGRKTVQGEDVEK 142 (154)
T ss_dssp TCCSCCCCHHHHHHHHHHT-----TCCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHH
T ss_pred ccccccCCccHHHHHHHHc-----CCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHH
Confidence 3456789999999999886 56799999999999999999999999999999999999999876654
No 23
>1f1e_A Histone fold protein; archaeal histone protein, DNA binding protein; HET: MSE; 1.37A {Methanopyrus kandleri} SCOP: a.22.1.2
Probab=97.90 E-value=3.7e-06 Score=63.10 Aligned_cols=61 Identities=10% Similarity=0.023 Sum_probs=54.5
Q ss_pred ccccchhHHHHHHHhhhcccccccHHHHHHHHHHHHHHHHHhhhhhhHhhhccCcceeeehhhcc
Q psy15118 63 IRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRMIASLVSLVG 127 (132)
Q Consensus 63 I~k~pF~rlVreI~~~~~~~~r~~~~Al~aLQeaaE~~Lv~lfe~a~l~a~HakRvTi~~~~~~~ 127 (132)
+|+.|..|++|+-+ ++.|++.+|-++|+++.|.|+..+-.+|+..|.|++|-||+-.|...
T Consensus 5 LP~a~V~Riik~~l----g~~rVS~dA~~~l~~~l~~f~~~i~~~A~~~a~ha~RKTv~a~DV~~ 65 (154)
T 1f1e_A 5 LPKAAIERIFRQGI----GERRLSQDAKDTIYDFVPTMAEYVANAAKSVLDASGKKTLMEEHLKA 65 (154)
T ss_dssp CCHHHHHHHHHTTS----TTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCSEECHHHHHH
T ss_pred CCccHHHHHHHhcC----CccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCHHHHHH
Confidence 68888888887664 45999999999999999999999999999999999999999977643
No 24
>3v9r_A MHF1, uncharacterized protein YOL086W-A; histone fold, fanconi anemia, DNA repair, DNA BI protein; 2.40A {Saccharomyces cerevisiae}
Probab=97.83 E-value=3.2e-05 Score=53.29 Aligned_cols=60 Identities=22% Similarity=0.149 Sum_probs=50.8
Q ss_pred ccchhHHHHHHHhhhc--ccccccHHHHHHHHHHHHHHHHHhhhhhhHhhhccCcceeeehh
Q psy15118 65 KLPFQRLVREIAQDFK--TDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRMIASLVS 124 (132)
Q Consensus 65 k~pF~rlVreI~~~~~--~~~r~~~~Al~aLQeaaE~~Lv~lfe~a~l~a~HakRvTi~~~~ 124 (132)
|..++--|-.|+++.. .+..++++++.+|-|.++.|+..+-+|+...|-||+|.||..-|
T Consensus 11 Kaal~~~V~ki~~e~~~~~g~~vs~~~i~aL~e~~~~~~~~ia~Dl~~fA~HAgRkTI~~eD 72 (90)
T 3v9r_A 11 KARLWIRVEERLQQVLSSEDIKYTPRFINSLLELAYLQLGEMGSDLQAFARHAGRGVVNKSD 72 (90)
T ss_dssp HHHHHHHHHHHHHHHSCSSCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHH
T ss_pred HHHHHHHHHHHHHHHHHhcCceeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHH
Confidence 4556666777777662 24789999999999999999999999999999999999998833
No 25
>3b0b_B CENP-S, centromere protein S; histone fold, DNA binding, DNA, nucleus, DNA binding protein; 2.15A {Gallus gallus}
Probab=97.73 E-value=4e-05 Score=54.37 Aligned_cols=60 Identities=20% Similarity=0.198 Sum_probs=49.7
Q ss_pred ccchhHHHHHHHhhhc--ccccccHHHHHHHHHHHHHHHHHhhhhhhHhhhccCcceeeehh
Q psy15118 65 KLPFQRLVREIAQDFK--TDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRMIASLVS 124 (132)
Q Consensus 65 k~pF~rlVreI~~~~~--~~~r~~~~Al~aLQeaaE~~Lv~lfe~a~l~a~HakRvTi~~~~ 124 (132)
|..++--|-.|+.+.. .+.+++++++.+|-|.++.|+..+..|+...|-||+|.||..-|
T Consensus 18 Kaal~~~V~rI~~~~g~~~~~~vs~~~i~aL~E~~~~~~~~ia~Da~~fA~HAgRkTI~~eD 79 (107)
T 3b0b_B 18 RAAVHYTTGCLCQDVAEDKGVLFSKQTVAAISEITFRQCENFARDLEMFARHAKRSTITSED 79 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHH
T ss_pred HHHHHHHHHHHHHHHhhhcCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCcCCHHH
Confidence 4455555666666553 35799999999999999999999999999999999999998844
No 26
>2byk_B Chrac-14; nucleosome sliding, histone fold, DNA-binding protein; 2.4A {Drosophila melanogaster} SCOP: a.22.1.3 PDB: 2bym_B
Probab=97.73 E-value=2.3e-05 Score=56.93 Aligned_cols=65 Identities=12% Similarity=0.161 Sum_probs=53.9
Q ss_pred chhccccchhHHHHHHHhhhcccccccHHHHHHHHHHHHHHHHHhhhhhhHhhhccCcceeeehhhcc
Q psy15118 60 ELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRMIASLVSLVG 127 (132)
Q Consensus 60 ~llI~k~pF~rlVreI~~~~~~~~r~~~~Al~aLQeaaE~~Lv~lfe~a~l~a~HakRvTi~~~~~~~ 127 (132)
++.+|.++..|++++... ...+++.+|..+|++++|.|+..|-..|+..+.|.+|-||+--|+..
T Consensus 7 d~~LP~A~I~rImK~~~p---d~~~iS~dA~~~l~ka~e~FI~~lt~~A~~~a~~~kRKTI~~~Dv~~ 71 (128)
T 2byk_B 7 DLNLPNAVIGRLIKEALP---ESASVSKEARAAIARAASVFAIFVTSSSTALAHKQNHKTITAKDILQ 71 (128)
T ss_dssp ----CCSHHHHHHHHHSC---TTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSCCHHHHHH
T ss_pred cccCCHHHHHHHHHHhCc---ccceECHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHH
Confidence 567899888888877653 46899999999999999999999999999999999999998866544
No 27
>1jfi_B DR1 protein, transcription regulator NC2 beta chain; histone, H2A/H2B, tata-DNA, transcription initiation, NC2, negative cofactor, structural genomics, PSI; 2.62A {Homo sapiens} SCOP: a.22.1.3
Probab=97.67 E-value=3.2e-05 Score=59.32 Aligned_cols=67 Identities=10% Similarity=0.212 Sum_probs=59.1
Q ss_pred cccchhccccchhHHHHHHHhhhcccccccHHHHHHHHHHHHHHHHHhhhhhhHhhhccCcceeeehhhcc
Q psy15118 57 KSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRMIASLVSLVG 127 (132)
Q Consensus 57 kst~llI~k~pF~rlVreI~~~~~~~~r~~~~Al~aLQeaaE~~Lv~lfe~a~l~a~HakRvTi~~~~~~~ 127 (132)
...++.+|+.+..|++++++. +.+++.+|.++|+++++.|+.-|-..||..+.|.+|.||+--|.+.
T Consensus 10 ~~eD~~LP~A~V~RImK~alp----~~rISkDA~~al~ec~~eFI~~LtseA~e~a~~~~RKTI~~eDVl~ 76 (179)
T 1jfi_B 10 NDDDLTIPRAAINKMIKETLP----NVRVANDARELVVNCCTEFIHLISSEANEICNKSEKKTISPEHVIQ 76 (179)
T ss_dssp --CCCCCCHHHHHHHHHHHST----TCCBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHH
T ss_pred chhhhhcCHHHHHHHHHHhCC----ccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCHHHHHH
Confidence 455788999999999998863 6899999999999999999999999999999999999998866554
No 28
>3vh5_A CENP-S; histone fold, chromosome segregation, DNA binding, nucleus, binding protein; 2.40A {Gallus gallus} PDB: 3vh6_A
Probab=97.65 E-value=5.8e-05 Score=55.88 Aligned_cols=60 Identities=22% Similarity=0.227 Sum_probs=50.7
Q ss_pred ccchhHHHHHHHhhhc--ccccccHHHHHHHHHHHHHHHHHhhhhhhHhhhccCcceeeehh
Q psy15118 65 KLPFQRLVREIAQDFK--TDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRMIASLVS 124 (132)
Q Consensus 65 k~pF~rlVreI~~~~~--~~~r~~~~Al~aLQeaaE~~Lv~lfe~a~l~a~HakRvTi~~~~ 124 (132)
|...+--|-.|+++.. .+..++++++.+|-++++.|+..+-.|+...|-||+|.||..-|
T Consensus 18 KaAl~y~VgkIvee~~~~~~~~vS~~ai~aL~El~~~~~e~ia~DLe~FAkHAGRKTI~~eD 79 (140)
T 3vh5_A 18 RAAVHYTTGALAQDVAEDKGVLFSKQTVAAISEITFRQAENFARDLEMFARHAKRSTITSED 79 (140)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHH
T ss_pred HHHHHHHHHHHHHHHHHhcCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHH
Confidence 4455556667776652 46899999999999999999999999999999999999998833
No 29
>1taf_A TFIID TBP associated factor 42; transcription initiation, histone fold, complex (TWO transcr factors); 2.00A {Drosophila melanogaster} SCOP: a.22.1.3
Probab=97.64 E-value=7.5e-05 Score=48.96 Aligned_cols=58 Identities=17% Similarity=0.322 Sum_probs=49.7
Q ss_pred HHHHHHHhhhcccccccHHHHHHHHHHHHHHHHHhhhhhhHhhhccCcceeeehhhccc
Q psy15118 70 RLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRMIASLVSLVGG 128 (132)
Q Consensus 70 rlVreI~~~~~~~~r~~~~Al~aLQeaaE~~Lv~lfe~a~l~a~HakRvTi~~~~~~~~ 128 (132)
++|..|+.+.+- -++++.+...|-|++|.|...+.+||..++-||+|-||..-|.-+.
T Consensus 5 ~~i~~iLk~~G~-~~~~~~v~~~L~e~~~ry~~~il~dA~~~a~HAgrktv~~eDVkLA 62 (68)
T 1taf_A 5 QVIMSILKELNV-QEYEPRVVNQLLEFTFRYVTSILDDAKVYANHARKKTIDLDDVRLA 62 (68)
T ss_dssp HHHHHHHHHTTC-CCBCTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHH
T ss_pred HHHHHHHHHCCC-cccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHH
Confidence 567777776653 4999999999999999999999999999999999999998554443
No 30
>4dra_A Centromere protein S; DNA binding complex, DNA damage repair, histone-fold, DNA BI protein; 2.41A {Homo sapiens} PDB: 4drb_A
Probab=97.63 E-value=7.6e-05 Score=53.45 Aligned_cols=60 Identities=18% Similarity=0.250 Sum_probs=48.2
Q ss_pred ccchhHHHHHHHhhhc--ccccccHHHHHHHHHHHHHHHHHhhhhhhHhhhccCcceeeehh
Q psy15118 65 KLPFQRLVREIAQDFK--TDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRMIASLVS 124 (132)
Q Consensus 65 k~pF~rlVreI~~~~~--~~~r~~~~Al~aLQeaaE~~Lv~lfe~a~l~a~HakRvTi~~~~ 124 (132)
|...+--|-.|+++.. .+..++++++.+|-|+++.|+..+-.|+...|-||+|.||+.-|
T Consensus 26 Kaal~y~V~rIvke~gaer~~~vS~~ai~aL~El~~~~~~~ia~Dl~~fAkHAgRkTI~~eD 87 (113)
T 4dra_A 26 KAAVHYTVGCLCEEVALDKEMQFSKQTIAAISELTFRQCENFAKDLEMFARHAKRTTINTED 87 (113)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHH
T ss_pred HHHHHHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCHHH
Confidence 3344444555555442 36789999999999999999999999999999999999998833
No 31
>1taf_B TFIID TBP associated factor 62; transcription initiation, histone fold, complex (TWO transcr factors); 2.00A {Drosophila melanogaster} SCOP: a.22.1.3
Probab=97.46 E-value=0.00017 Score=47.50 Aligned_cols=58 Identities=19% Similarity=0.141 Sum_probs=47.4
Q ss_pred hccccchhHHHHHHHhhhcccccccHHHHHHHHHHHHHHHHHhhhhhhHhhhccCcceeeehh
Q psy15118 62 LIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRMIASLVS 124 (132)
Q Consensus 62 lI~k~pF~rlVreI~~~~~~~~r~~~~Al~aLQeaaE~~Lv~lfe~a~l~a~HakRvTi~~~~ 124 (132)
.+|..|..+++ ++.+ --+.+.+|..+|-+-+|.++-.+.++|..++.|+||-||+..|
T Consensus 6 ~lp~~~v~~ia----es~G-i~~lsddaa~~LA~dvEyr~~eI~qeA~kfmrHakRk~Lt~~D 63 (70)
T 1taf_B 6 SISAESMKVIA----ESIG-VGSLSDDAAKELAEDVSIKLKRIVQDAAKFMNHAKRQKLSVRD 63 (70)
T ss_dssp CCCHHHHHHHH----HHTT-CCCBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHH
T ss_pred cCCHHHHHHHH----HHCC-CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCeecHHH
Confidence 35666665554 4333 2489999999999999999999999999999999999998743
No 32
>4g92_C HAPE; transcription factor, nucleosome, minor groove binding, CCAA complex, histone fold motif, specific binding to the ccaat- nucleus; HET: DNA; 1.80A {Aspergillus nidulans} PDB: 4g91_C*
Probab=97.13 E-value=0.00064 Score=48.53 Aligned_cols=68 Identities=13% Similarity=0.222 Sum_probs=58.0
Q ss_pred chhccccchhHHHHHHHhhhcccccccHHHHHHHHHHHHHHHHHhhhhhhHhhhccCcceeeehhhccc
Q psy15118 60 ELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRMIASLVSLVGG 128 (132)
Q Consensus 60 ~llI~k~pF~rlVreI~~~~~~~~r~~~~Al~aLQeaaE~~Lv~lfe~a~l~a~HakRvTi~~~~~~~~ 128 (132)
+.-.+.+|..| |+.|++.-...-+++.+|..++..++|.|+..|.+.|+.+|...||-||+-.++..-
T Consensus 36 d~k~~~lPvaR-IkrImK~d~~~~~is~eA~v~la~a~E~Fi~~L~~~A~~~a~~~krktI~~~di~~A 103 (119)
T 4g92_C 36 DYKIHQLPLAR-IKKVMKADPEVKMISAEAPILFAKGCDVFITELTMRAWIHAEDNKRRTLQRSDIAAA 103 (119)
T ss_dssp CSSCCSSCHHH-HHHHHHTSTTCCEECTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHH
T ss_pred ccccCCCCHHH-HHHHHhhCCccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCccCHHHHHHH
Confidence 44567789988 688888555567999999999999999999999999999999999999987665443
No 33
>2x4w_B Histone H3.2; transcription, metal-binding, zinc-finger, chromatin regulator, transcription regulation; HET: M3L; 1.50A {Homo sapiens} PDB: 2x4x_B* 2x4y_B*
Probab=97.06 E-value=0.0002 Score=37.85 Aligned_cols=23 Identities=74% Similarity=1.066 Sum_probs=17.7
Q ss_pred hccCCCCCCCCCCCcccCCCchh
Q psy15118 26 ARKSAPATGGVKKPHRYRPGTVA 48 (132)
Q Consensus 26 ~~k~~~~~~~~kk~~r~rpg~~a 48 (132)
+++++|..++.+++|||+||+++
T Consensus 4 ark~~p~~~~~kk~~RyRPGtvA 26 (26)
T 2x4w_B 4 ARKSAPATGGVXKPHRYRXXXXX 26 (26)
T ss_pred cccCCCCCCccccccccccccCC
Confidence 34555667778899999999875
No 34
>1n1j_B NF-YC; histone-like PAIR, DNA binding protein; 1.67A {Homo sapiens} SCOP: a.22.1.3
Probab=96.98 E-value=0.00096 Score=45.86 Aligned_cols=77 Identities=16% Similarity=0.224 Sum_probs=50.7
Q ss_pred hHHHhhhhcccchhccccchhHHHHHHHhhhcccccccHHHHHHHHHHHHHHHHHhhhhhhHhhhccCcceeeehhhcc
Q psy15118 49 LREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRMIASLVSLVG 127 (132)
Q Consensus 49 l~EIr~~Qkst~llI~k~pF~rlVreI~~~~~~~~r~~~~Al~aLQeaaE~~Lv~lfe~a~l~a~HakRvTi~~~~~~~ 127 (132)
+.||+..-- .+.--..+|-.|+ +.|++.-...-+++.+|..+|..++|.|+..|.+.|+.+|.|.||.||+-.++..
T Consensus 4 ~~~~~~~~~-~~~~~~~lP~arI-krImK~~~~~~~is~eA~~~laka~E~Fi~~l~~~A~~~a~~~krktI~~~di~~ 80 (97)
T 1n1j_B 4 MEEIRNLTV-KDFRVQELPLARI-KKIMKLDEDVKMISAEAPVLFAKAAQIFITELTLRAWIHTEDNKRRTLQRNDIAM 80 (97)
T ss_dssp -----------------CCHHHH-HHHHTTSTTCCCBCTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHH
T ss_pred HHHHHhccc-CCcCCCcCCHHHH-HHHHccCccccccChHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCCHHHHHH
Confidence 456665421 2233355666664 6677654444689999999999999999999999999999999999998755543
No 35
>2ly8_A Budding yeast chaperone SCM3; centromere protein, CENH3 variants, partially unfolded; NMR {Saccharomyces cerevisiae}
Probab=96.54 E-value=0.0013 Score=47.51 Aligned_cols=46 Identities=17% Similarity=0.223 Sum_probs=42.4
Q ss_pred cccccHHHHHHHHHHHHHHHHHhhhhhhHhhhccCcceeeehhhcc
Q psy15118 82 DLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRMIASLVSLVG 127 (132)
Q Consensus 82 ~~r~~~~Al~aLQeaaE~~Lv~lfe~a~l~a~HakRvTi~~~~~~~ 127 (132)
--|++.++-+.+.++.|.||..+..||...+-|++|.||+.+|-++
T Consensus 62 vkRIS~~iy~e~r~vl~~~l~~i~rdav~yaehA~RKTVta~DV~~ 107 (121)
T 2ly8_A 62 SKRISGLIYEEVRAVLKSFLESVIRDSVTYTEHAKRKTVTSLDVVY 107 (121)
T ss_dssp SSCCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCBCHHHHHH
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCcHHHHHH
Confidence 4689999999999999999999999999999999999999977553
No 36
>1h3o_B Transcription initiation factor TFIID 20/15 kDa subunits; transcription/TBP-associated factors, TBP-associated factors; 2.3A {Homo sapiens} SCOP: a.22.1.3
Probab=96.30 E-value=0.0089 Score=39.81 Aligned_cols=60 Identities=17% Similarity=0.268 Sum_probs=52.7
Q ss_pred hhccccchhHHHHHHHhhhcccccccHHHHHHHHHHHHHHHHHhhhhhhHhhhccCcceeeehh
Q psy15118 61 LLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRMIASLVS 124 (132)
Q Consensus 61 llI~k~pF~rlVreI~~~~~~~~r~~~~Al~aLQeaaE~~Lv~lfe~a~l~a~HakRvTi~~~~ 124 (132)
.+++|.-.+.||++| .+...+.+++-++|.+.|++|+....+.|-.+|-|.+--||.+.|
T Consensus 4 ~vl~k~~L~~Lv~~i----dp~~~ld~~vee~ll~lADdFV~~V~~~ac~lAKhR~s~~le~kD 63 (76)
T 1h3o_B 4 MVLTKKKLQDLVREV----DPNEQLDEDVEEMLLQIADDFIESVVTAACQLARHRKSSTLEVKD 63 (76)
T ss_dssp CSSCHHHHHHHHHHH----CSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEECHHH
T ss_pred ccccHHHHHHHHHhc----CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccHHH
Confidence 356777778888777 467899999999999999999999999999999999999998844
No 37
>1jfi_A Transcription regulator NC2 alpha chain; histone, H2A/H2B, tata-DNA, transcription initiation, NC2, negative cofactor, structural genomics, PSI; 2.62A {Homo sapiens} SCOP: a.22.1.3
Probab=96.19 E-value=0.0065 Score=41.81 Aligned_cols=65 Identities=14% Similarity=0.150 Sum_probs=49.5
Q ss_pred cccchhHHHHHHHhhhcccccccHHHHHHHHHHHHHHHHHhhhhhhHhhhccCcceeeehhhcccc
Q psy15118 64 RKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRMIASLVSLVGGA 129 (132)
Q Consensus 64 ~k~pF~rlVreI~~~~~~~~r~~~~Al~aLQeaaE~~Lv~lfe~a~l~a~HakRvTi~~~~~~~~~ 129 (132)
..+|..|+ +.|++.-...-+++.+|...|-.+.|.|+..|.+.|+.+|.|.+|-||+-.++-+-|
T Consensus 10 ~~fPvaRI-krimK~~~~~~~vs~~A~v~la~a~E~Fi~el~~~A~~~a~~~krktI~~~di~~av 74 (98)
T 1jfi_A 10 ARFPPARI-KKIMQTDEEIGKVAAAVPVIISRALELFLESLLKKACQVTQSRNAKTMTTSHLKQCI 74 (98)
T ss_dssp CCCCHHHH-HHHHTTSTTCCCBCTTHHHHHHHHHHHHHHHHHHHHHHHHHTC---CBCHHHHHTTC
T ss_pred CCCChHHH-HHHHHcCccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCeecHHHHHHHH
Confidence 34566664 666665433369999999999999999999999999999999999999886665544
No 38
>2byk_A Chrac-16; nucleosome sliding, histone fold, DNA-binding protein; 2.4A {Drosophila melanogaster} SCOP: a.22.1.3 PDB: 2bym_A
Probab=95.37 E-value=0.013 Score=42.99 Aligned_cols=62 Identities=13% Similarity=0.105 Sum_probs=44.4
Q ss_pred cccchhHHHHHHHhhhcccccccHHHHHHHHHHHHHHHHHhhhhhhHhh-hccCcceeeehhhc
Q psy15118 64 RKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCA-IHAKRMIASLVSLV 126 (132)
Q Consensus 64 ~k~pF~rlVreI~~~~~~~~r~~~~Al~aLQeaaE~~Lv~lfe~a~l~a-~HakRvTi~~~~~~ 126 (132)
..+|..|+ +.|++.-...-.++.+|..+++.|+|.|+..|.+.|+.+| ...||-||+-.++.
T Consensus 18 ~~LPlaRI-KrIMK~dpdv~~Is~eA~vliakA~ElFI~~Lt~~A~~~a~~~~kRKtI~~~Dl~ 80 (140)
T 2byk_A 18 TFLPLSRV-RTIMKSSMDTGLITNEVLFLMTKCTELFVRHLAGAAYTEEFGQRPGEALKYEHLS 80 (140)
T ss_dssp ------------CCSSSSCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSCEECHHHHH
T ss_pred CCCCHHHH-HHHHhcCcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccCHHHHH
Confidence 45666664 7777755444689999999999999999999999999999 99999999875554
No 39
>2l5a_A Histone H3-like centromeric protein CSE4, protein histone H4; A single chain of CSE4+SCM3+H4, fusion protein; NMR {Saccharomyces cerevisiae}
Probab=95.36 E-value=0.012 Score=46.78 Aligned_cols=47 Identities=17% Similarity=0.186 Sum_probs=42.8
Q ss_pred ccccccHHHHHHHHHHHHHHHHHhhhhhhHhhhccCcceeeehhhcc
Q psy15118 81 TDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRMIASLVSLVG 127 (132)
Q Consensus 81 ~~~r~~~~Al~aLQeaaE~~Lv~lfe~a~l~a~HakRvTi~~~~~~~ 127 (132)
.--|++.++.+.+-++.|.||..+..||..+|-||+|-||+.+|.++
T Consensus 175 GVkRIS~~iyeelr~vLe~fle~IirdAv~yaeHA~RKTVta~DV~~ 221 (235)
T 2l5a_A 175 GVKRISGLIYEEVRAVLKSFLESVIRDSVTYTEHAKRKTVTSLDVVY 221 (235)
T ss_dssp TCCTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSCCHHHHHH
T ss_pred CchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCcHHHHHH
Confidence 34699999999999999999999999999999999999999866543
No 40
>3a1b_A DNA (cytosine-5)-methyltransferase 3A, histone H3; zinc-finger, histone binding, chromosomal protein, DNA damag repair, DNA-binding, methylation; HET: DNA; 2.29A {Homo sapiens} PDB: 3a1a_A*
Probab=90.80 E-value=0.048 Score=40.90 Aligned_cols=20 Identities=100% Similarity=1.232 Sum_probs=12.2
Q ss_pred CCccccccccCCCCCCcchh
Q psy15118 2 ARTKQTARKSTGGKAPRKQL 21 (132)
Q Consensus 2 ARtK~~a~k~~g~kaprk~~ 21 (132)
|||||+|||++|+|++.+++
T Consensus 1 ~~~~~~~r~s~~~K~~~~~~ 20 (159)
T 3a1b_A 1 ARTKQTARKSTGGKAPRKQL 20 (159)
T ss_dssp CEEEECCCC-------CHHH
T ss_pred CccccccccccCCCcchHHH
Confidence 79999999999999999987
No 41
>1tzy_A Histone H2A-IV; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1eqz_A 1hq3_A 2aro_A 2hio_A 3c9k_A 3azg_C 3a6n_C 3an2_C 3av1_C 3av2_C 3ayw_C 3aze_C 3azf_C 3afa_C 3azh_C 3azi_C 3azj_C 3azk_C 3azl_C 3azm_C ...
Probab=90.51 E-value=0.2 Score=36.09 Aligned_cols=64 Identities=19% Similarity=0.034 Sum_probs=53.1
Q ss_pred chhccccchhHHHHHHHhhhcccccccHHHHHHHHHHHHHHHHHhhhhhhHhhhccCcceeeehhhcc
Q psy15118 60 ELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRMIASLVSLVG 127 (132)
Q Consensus 60 ~llI~k~pF~rlVreI~~~~~~~~r~~~~Al~aLQeaaE~~Lv~lfe~a~l~a~HakRvTi~~~~~~~ 127 (132)
.|.+|-.++.|+.++-. .-.|+..+|-..|-..-|.+...++|.|...|.|++|.+|+-.++-+
T Consensus 23 gLqfPV~rI~R~Lk~~~----~a~RVs~~A~VyLaAvLEyL~aEIlelAgn~A~~~k~krItp~hi~l 86 (129)
T 1tzy_A 23 GLQFPVGRVHRLLRKGN----YAERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQL 86 (129)
T ss_dssp TCSSCHHHHHHHHHHTT----SSSEECTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHH
T ss_pred ceeccHHHHHHHHHccc----cccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeEcHHHHHH
Confidence 47788888888875532 23499999999999999999999999999999999999998755433
No 42
>2f8n_G Core histone macro-H2A.1; nucleosome, NCP, macroh2A, histone variant, chromatin, X- RAY structure, crystallography, structural protein/DNA complex; 2.90A {Homo sapiens} SCOP: a.22.1.1 PDB: 1u35_C
Probab=90.30 E-value=0.26 Score=35.10 Aligned_cols=64 Identities=11% Similarity=0.032 Sum_probs=53.4
Q ss_pred chhccccchhHHHHHHHhhhcccccccHHHHHHHHHHHHHHHHHhhhhhhHhhhccCcceeeehhhcc
Q psy15118 60 ELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRMIASLVSLVG 127 (132)
Q Consensus 60 ~llI~k~pF~rlVreI~~~~~~~~r~~~~Al~aLQeaaE~~Lv~lfe~a~l~a~HakRvTi~~~~~~~ 127 (132)
.|.+|-.++.|+.++-- .-.|+..+|-..|-..-|.+...++|.|...|.|+++.+|+-.++-+
T Consensus 20 gLqfPV~ri~R~Lk~~~----~a~RV~~~A~VyLaAvLEyL~aEIlelAgn~A~~~k~~rItp~hi~l 83 (120)
T 2f8n_G 20 GVIFPVGRMLRYIKKGH----PKYRIGVGAPVYMAAVLEYLTAEILELAVNAARDNKKGRVTPRHILL 83 (120)
T ss_dssp TCSSCHHHHHHHHHHHS----SSCEECTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHH
T ss_pred CccCChHHHHHHHHcCc----cccccccchHHHHHHHHHHHHHHHHHHHHHHHhhcCCceEcHHHHHH
Confidence 47788888888886642 23599999999999999999999999999999999999998755433
No 43
>3avr_B Histone H3; cupin superfamily, TRI/dimethyllysine demethylase, oxidoredu structural protein complex; HET: M3L OGA EDO; 1.80A {Homo sapiens}
Probab=89.30 E-value=0.16 Score=26.37 Aligned_cols=24 Identities=83% Similarity=1.020 Sum_probs=17.0
Q ss_pred chhhhhhhccCCCCCCCCCCCccc
Q psy15118 19 KQLATKAARKSAPATGGVKKPHRY 42 (132)
Q Consensus 19 k~~a~k~~~k~~~~~~~~kk~~r~ 42 (132)
++++++++++++|..++.+++||.
T Consensus 2 K~la~Kaarks~p~~~g~kk~hR~ 25 (26)
T 3avr_B 2 KQLATKAARXSAPATGGVKKPXXX 25 (26)
T ss_pred cccccccccCCCCCCccccccCCC
Confidence 566677777777777777777763
No 44
>1f66_C Histone H2A.Z; nucleosome, chromatin, histone variant, protein DNA interaction, nucleoprotein, supercoiled DNA, complex (nucleosome core/DNA); 2.60A {Homo sapiens} SCOP: a.22.1.1
Probab=88.55 E-value=0.28 Score=35.28 Aligned_cols=64 Identities=13% Similarity=-0.004 Sum_probs=52.2
Q ss_pred chhccccchhHHHHHHHhhhcccccccHHHHHHHHHHHHHHHHHhhhhhhHhhhccCcceeeehhhc
Q psy15118 60 ELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRMIASLVSLV 126 (132)
Q Consensus 60 ~llI~k~pF~rlVreI~~~~~~~~r~~~~Al~aLQeaaE~~Lv~lfe~a~l~a~HakRvTi~~~~~~ 126 (132)
.|.+|-.++.|+.++-.. ...|+..+|-..|-..-|.+...++|.|...|.|+++.+|+-.++-
T Consensus 25 gLqfPV~ri~R~Lk~~~~---a~~RV~~~A~VyLaAvLEyL~aEIlelAgn~A~~~k~krItprhi~ 88 (128)
T 1f66_C 25 GLQFPVGRIHRHLKSRTT---SHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHLQ 88 (128)
T ss_dssp TCSSCHHHHHHHHHHTSC---SSCEECTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCSEECHHHHH
T ss_pred CccCChHHHHHHHHHccc---chhhccccHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeEcHHHHH
Confidence 477888888888754321 2358999999999999999999999999999999999999775543
No 45
>2nqb_C Histone H2A; nucleosome, NCP, chromatin, structural protein/DNA complex; 2.30A {Drosophila melanogaster} PDB: 2pyo_C*
Probab=88.06 E-value=0.71 Score=32.89 Aligned_cols=64 Identities=19% Similarity=0.043 Sum_probs=52.8
Q ss_pred chhccccchhHHHHHHHhhhcccccccHHHHHHHHHHHHHHHHHhhhhhhHhhhccCcceeeehhhcc
Q psy15118 60 ELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRMIASLVSLVG 127 (132)
Q Consensus 60 ~llI~k~pF~rlVreI~~~~~~~~r~~~~Al~aLQeaaE~~Lv~lfe~a~l~a~HakRvTi~~~~~~~ 127 (132)
.|.+|-.+|.|+.++- ..-.|+..+|-..|-..-|.+...++|.|...|.|+++.+|+-.++-+
T Consensus 21 gL~fPV~ri~R~Lk~~----~~a~RV~~~A~VyLaAvLEyL~aEIlelAgn~A~~~k~krItp~hi~l 84 (123)
T 2nqb_C 21 GLQFPVGRIHRLLRKG----NYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQL 84 (123)
T ss_dssp TCSSCHHHHHHHHHHT----TSCSEECTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHH
T ss_pred CeeccHHHHHHHHHcc----ccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccHHHHHH
Confidence 4678888888887553 223499999999999999999999999999999999999998755433
No 46
>2f8n_K Histone H2A type 1; nucleosome, NCP, macroh2A, histone variant, chromatin, X- RAY structure, crystallography, structural protein/DNA complex; 2.90A {Mus musculus} SCOP: a.22.1.1
Probab=84.81 E-value=1 Score=33.25 Aligned_cols=64 Identities=19% Similarity=0.044 Sum_probs=52.7
Q ss_pred chhccccchhHHHHHHHhhhcccccccHHHHHHHHHHHHHHHHHhhhhhhHhhhccCcceeeehhhcc
Q psy15118 60 ELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRMIASLVSLVG 127 (132)
Q Consensus 60 ~llI~k~pF~rlVreI~~~~~~~~r~~~~Al~aLQeaaE~~Lv~lfe~a~l~a~HakRvTi~~~~~~~ 127 (132)
.|.+|-.+|.|+.++- ..-.|+..+|-..|-..-|.+...++|.|...|.|++|.+|.-.++-+
T Consensus 42 gLqFPVgrI~R~LK~~----~~a~RVs~~A~VyLAAVLEYL~aEILelAgn~A~~~krkrItprhI~l 105 (149)
T 2f8n_K 42 GLQFPVGRVHRLLRKG----NYSERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQL 105 (149)
T ss_dssp TCSSCHHHHHHHHHHT----TSCSEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHH
T ss_pred CeeccHHHHHHHHHcc----ccccccCcCcHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCcHHHHHH
Confidence 4778888888886543 223499999999999999999999999999999999999998755433
No 47
>1id3_C Histone H2A.1; nucleosome core particle, chromatin, protein/DNA interaction, nucleoprotein, supercoiled DNA; 3.10A {Saccharomyces cerevisiae} SCOP: a.22.1.1
Probab=84.54 E-value=0.92 Score=32.66 Aligned_cols=64 Identities=20% Similarity=0.055 Sum_probs=52.1
Q ss_pred chhccccchhHHHHHHHhhhcccccccHHHHHHHHHHHHHHHHHhhhhhhHhhhccCcceeeehhhcc
Q psy15118 60 ELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRMIASLVSLVG 127 (132)
Q Consensus 60 ~llI~k~pF~rlVreI~~~~~~~~r~~~~Al~aLQeaaE~~Lv~lfe~a~l~a~HakRvTi~~~~~~~ 127 (132)
.|.+|-.++.|+.++- ..-.|+..+|-..|-..-|.+...++|.|...|.|++|.+|+-.++-+
T Consensus 23 gLqfPV~rI~R~Lk~~----~~a~RVs~~A~VyLaAvLEyL~aEIlelAgn~A~~~k~krItp~hI~l 86 (131)
T 1id3_C 23 GLTFPVGRVHRLLRRG----NYAQRIGSGAPVYLTAVLEYLAAEILELAGNAARDNKKTRIIPRHLQL 86 (131)
T ss_dssp TCSSCHHHHHHHHHTT----CSCSEECSSHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHH
T ss_pred CeecCHHHHHHHHHcc----ccccccchhhHHHHHHHHHHHHHHHHHHHHHHHhhcCCceEcHHHHHH
Confidence 3678888888876442 223499999999999999999999999999999999999997755433
No 48
>2jss_A Chimera of histone H2B.1 and histone H2A.Z; histone/chaperone complex, intrinsically unfolded protein, chaperone/structural protein complex; NMR {Saccharomyces cerevisiae} SCOP: a.22.1.1 a.22.1.1
Probab=82.05 E-value=0.58 Score=35.46 Aligned_cols=65 Identities=18% Similarity=0.042 Sum_probs=53.2
Q ss_pred chhccccchhHHHHHHHhhhcccccccHHHHHHHHHHHHHHHHHhhhhhhHhhhccCcceeeehhhcc
Q psy15118 60 ELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRMIASLVSLVG 127 (132)
Q Consensus 60 ~llI~k~pF~rlVreI~~~~~~~~r~~~~Al~aLQeaaE~~Lv~lfe~a~l~a~HakRvTi~~~~~~~ 127 (132)
+|.+|-.++.|+.++-. ....|+..+|-..|-..-|.+...++|.|...|.|++|.+|+-.++-+
T Consensus 103 gl~fPv~ri~R~lk~~~---~a~~Rv~~~A~vyLaavLEyl~~eIlelA~n~a~~~~~~~I~p~~i~l 167 (192)
T 2jss_A 103 GLQFPVGRIKRYLKRHA---TGRTRVGSKAAIYLTAVLEYLTAEVLELAGNAAKDLKVKRITPRHLQL 167 (192)
T ss_dssp SCCSCHHHHHHHHHHTT---CSSCCCCTTTHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHHH
T ss_pred CCcCCHHHHHHHHHhcC---ccccccccChHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCHHHHHH
Confidence 57788888888875531 123689999999999999999999999999999999999998755543
No 49
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=46.95 E-value=14 Score=25.40 Aligned_cols=49 Identities=10% Similarity=0.028 Sum_probs=33.3
Q ss_pred cccccHHHHHHHHHHHHHHHHHhhhhhhHhhhccCcceeeehhhccccc
Q psy15118 82 DLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRMIASLVSLVGGAS 130 (132)
Q Consensus 82 ~~r~~~~Al~aLQeaaE~~Lv~lfe~a~l~a~HakRvTi~~~~~~~~~~ 130 (132)
+..++.+++..|.+.+.-.+-.+......++..++.+|...++.++|.+
T Consensus 178 ~~~~~~~~~~~l~~~~~g~~r~l~~~l~~~~~~~~~I~~~~v~~~~~~~ 226 (226)
T 2chg_A 178 GVKITEDGLEALIYISGGDFRKAINALQGAAAIGEVVDADTIYQITATA 226 (226)
T ss_dssp TCCBCHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSCBCHHHHHHHHHTC
T ss_pred CCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhcCceecHHHHHHHhcCC
Confidence 5568899988888777654444444444555556788888787777754
No 50
>1r4v_A Hypothetical protein AQ_328; structural genomics, all-alpha, histon fold, PSI, protein ST initiative, midwest center for structural genomics; HET: MSE; 1.90A {Aquifex aeolicus} SCOP: a.22.1.4
Probab=41.27 E-value=54 Score=24.55 Aligned_cols=66 Identities=18% Similarity=0.160 Sum_probs=53.5
Q ss_pred hhcccch--hccccchhHHHHHHHhhhcccccccHHHHHHHHHHHHHHHHHhhhhhhHhhhccCcceeeehhh
Q psy15118 55 YQKSTEL--LIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRMIASLVSL 125 (132)
Q Consensus 55 ~Qkst~l--lI~k~pF~rlVreI~~~~~~~~r~~~~Al~aLQeaaE~~Lv~lfe~a~l~a~HakRvTi~~~~~ 125 (132)
|.+-.+. +|+-.-|.++.|+-+ ++....+-+.-+-+.+|.-|-.||+-|+.-|-...|-.|...||
T Consensus 17 ~~~~~~Mm~vmg~~kferlFR~aa-----gLDvdK~d~kr~~d~V~~Kl~DLl~va~~~Ak~NgRDvI~~~DL 84 (171)
T 1r4v_A 17 YSKIETMLRPKGFDKLDHYFRTEL-----DIDLTDETIELLLNSVKAAFGKLFYGAEQRARWNGRDFIALADL 84 (171)
T ss_dssp ----CCTTSCTTHHHHHHHHHHHH-----CCCCCHHHHHHHHHHHHHHHHHTTTTHHHHHHHTTCSEECGGGS
T ss_pred HHHHHHHHhcCChHHHHHHHHHHh-----ccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeeccccC
Confidence 4343444 778888999988876 47778888999999999999999999999999999999987654
No 51
>4dra_E Centromere protein X; DNA binding complex, DNA damage repair, histone-fold, DNA BI protein; 2.41A {Homo sapiens} PDB: 4drb_J
Probab=39.64 E-value=78 Score=20.88 Aligned_cols=41 Identities=12% Similarity=0.112 Sum_probs=29.0
Q ss_pred HHHHHHHhhh--cccccccHHHHHHHHHHHHHHHHHhhhhhhH
Q psy15118 70 RLVREIAQDF--KTDLRFQSSAVMALQEASEAYLVGLFEDTNL 110 (132)
Q Consensus 70 rlVreI~~~~--~~~~r~~~~Al~aLQeaaE~~Lv~lfe~a~l 110 (132)
.+|.+|++.. +..++++.+|+.++++-.+-|...-+.-|..
T Consensus 16 ~li~ril~~~F~~~kTkIs~dAl~l~aeyl~iFV~EAv~RA~~ 58 (84)
T 4dra_E 16 ELVSRLLHLHFKDDKTKVSGDALQLMVELLKVFVVEAAVRGVR 58 (84)
T ss_dssp HHHHHHHHTTCSSTTCEECHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCccccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555666543 3689999999999998887776655554443
No 52
>3b0b_C CENP-X, centromere protein X; histone fold, DNA binding, DNA, nucleus, DNA binding protein; 2.15A {Gallus gallus} PDB: 3vh5_D 3vh6_D
Probab=35.16 E-value=93 Score=20.25 Aligned_cols=42 Identities=10% Similarity=0.101 Sum_probs=29.4
Q ss_pred HHHHHHHhhh--cccccccHHHHHHHHHHHHHHHHHhhhhhhHh
Q psy15118 70 RLVREIAQDF--KTDLRFQSSAVMALQEASEAYLVGLFEDTNLC 111 (132)
Q Consensus 70 rlVreI~~~~--~~~~r~~~~Al~aLQeaaE~~Lv~lfe~a~l~ 111 (132)
.++.+|.+.. ....+++.+|+.++.+--+-|...-+.-|..-
T Consensus 12 ~lI~ril~~~f~~~ktrI~~dAl~l~aeyl~iFV~EAv~RA~~~ 55 (81)
T 3b0b_C 12 ETVERLLRLHFRDGRTRVNGDALLLMAELLKVFVREAAARAARQ 55 (81)
T ss_dssp HHHHHHHHHHCCSTTCEECHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCcccccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555565553 36789999999999888777776665554443
No 53
>1h3o_A Transcription initiation factor TFIID 135 kDa subunit; transcription/TBP-associated factors, TBP-associated factors; 2.3A {Homo sapiens} SCOP: a.22.1.3
Probab=34.23 E-value=41 Score=21.85 Aligned_cols=52 Identities=21% Similarity=0.259 Sum_probs=38.3
Q ss_pred ccccchhHHHHHHHhhhcccccccHHHHHHHHHHHHHHHHHhhhhhhHhhhcc
Q psy15118 63 IRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHA 115 (132)
Q Consensus 63 I~k~pF~rlVreI~~~~~~~~r~~~~Al~aLQeaaE~~Lv~lfe~a~l~a~Ha 115 (132)
+...|.++=+.||+..++ =.-+++++...+--|+|..|-+|+|.-...+-|.
T Consensus 3 L~~~~Lqkri~~I~~k~g-l~~~~~dv~~~iS~a~qeRLr~llekl~~~a~~R 54 (75)
T 1h3o_A 3 LLQAPLQRRILEIGKKHG-ITELHPDVVSYVSHATQQRLQNLVEKISETAQQK 54 (75)
T ss_dssp SCHHHHHHHHHHHHHTTT-CCEECTTHHHHHHHHHHHHHHHHHHHHHC-----
T ss_pred cccHHHHHHHHHHHHhcC-CCcCChhHHHHhHHHHHHHHHHHHHHHHHHHHhh
Confidence 455678888889987653 2357888999999999999999999887777764
No 54
>3qb5_K Translin-associated protein X; alpha helical bundle, ribonuclease, hydrolase; 2.95A {Homo sapiens} PDB: 3pja_J
Probab=32.71 E-value=49 Score=26.27 Aligned_cols=37 Identities=24% Similarity=0.265 Sum_probs=23.0
Q ss_pred HHHHHHhhhc--ccccccHHHHHHHHHHHHHHHHHhhhh
Q psy15118 71 LVREIAQDFK--TDLRFQSSAVMALQEASEAYLVGLFED 107 (132)
Q Consensus 71 lVreI~~~~~--~~~r~~~~Al~aLQeaaE~~Lv~lfe~ 107 (132)
++.+|+.++. +.++|...--.+|||.+|++.-.-|=.
T Consensus 100 ~~~~La~~l~~~~~yry~~~~s~~lQEyVEA~sf~~yL~ 138 (290)
T 3qb5_K 100 KIFQVAQELSGEDMHQFHRAITTGLQEYVEAVSFQHFIK 138 (290)
T ss_dssp HHHHHHHHHSSSCSTTTGGGTHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 3344444432 346777555579999999887665543
No 55
>1wwi_A Hypothetical protein TTHA1479; structural genomics, unknown function, riken structural genomics/proteomics initiative, RSGI; 1.58A {Thermus thermophilus HB8} SCOP: a.22.1.4 PDB: 1wws_A
Probab=26.94 E-value=97 Score=22.63 Aligned_cols=58 Identities=19% Similarity=0.186 Sum_probs=47.4
Q ss_pred ccccchhHHHHHHHhhhcccccccHHHHHHHHHHHHHHHHHhhhhhhHhhhccCcceeeehhh
Q psy15118 63 IRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRMIASLVSL 125 (132)
Q Consensus 63 I~k~pF~rlVreI~~~~~~~~r~~~~Al~aLQeaaE~~Lv~lfe~a~l~a~HakRvTi~~~~~ 125 (132)
|+-.-|.++.|+-+ ++....+-+.-+-+.+|.-|-.||+-++.-|-...|-.|...||
T Consensus 3 m~~~~~e~lFR~aa-----~LdvdK~d~~r~~d~V~~Kl~DLl~va~~~Ak~n~RdvI~~~DL 60 (148)
T 1wwi_A 3 MKVAEFERLFRQAA-----GLDVDKNDLKRVSDFLRNKLYDLLAVAERNAKYNGRDLIFEPDL 60 (148)
T ss_dssp SCHHHHHHHHHHHH-----CCCCCGGGHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECGGGS
T ss_pred CCHHHHHHHHHHHh-----ccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeeccccC
Confidence 44455788877775 46666777888899999999999999999999999999987554
No 56
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=22.18 E-value=88 Score=21.36 Aligned_cols=47 Identities=17% Similarity=0.168 Sum_probs=30.1
Q ss_pred ccccccHHHHHHHHHHHHH---HHHHhhhhhhHhhhccCcceeeehhhcccc
Q psy15118 81 TDLRFQSSAVMALQEASEA---YLVGLFEDTNLCAIHAKRMIASLVSLVGGA 129 (132)
Q Consensus 81 ~~~r~~~~Al~aLQeaaE~---~Lv~lfe~a~l~a~HakRvTi~~~~~~~~~ 129 (132)
.+..++.+++..|.+.++- ++..+++.+.. .-.+.+|...++.++|+
T Consensus 201 ~~~~~~~~~~~~l~~~~~G~~~~~~~~~~~~~~--~~~~~i~~~~v~~~~~~ 250 (250)
T 1njg_A 201 EHIAHEPRALQLLARAAEGSLRDALSLTDQAIA--SGDGQVSTQAVSAMLGT 250 (250)
T ss_dssp TTCCBCHHHHHHHHHHHTTCHHHHHHHHHHHHT--TTTSSBCHHHHHHHSCC
T ss_pred cCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHh--ccCceecHHHHHHHhCC
Confidence 3567889998888888763 44555555422 22346777777777774
No 57
>2ctr_A DNAJ homolog subfamily B member 9; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=21.43 E-value=1.3e+02 Score=18.82 Aligned_cols=30 Identities=23% Similarity=0.344 Sum_probs=19.8
Q ss_pred HHHHhhhcccccccHHHHHHHHHHHHHHHH
Q psy15118 73 REIAQDFKTDLRFQSSAVMALQEASEAYLV 102 (132)
Q Consensus 73 reI~~~~~~~~r~~~~Al~aLQeaaE~~Lv 102 (132)
|+++..+++|..-...+-+.+++..|+|=+
T Consensus 29 r~l~~~~HPDk~~~~~a~~~f~~i~~Ay~~ 58 (88)
T 2ctr_A 29 HKLAMKYHPDKNKSPDAEAKFREIAEAYET 58 (88)
T ss_dssp HHHHHHTCTTTCCSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCcCCCCChHHHHHHHHHHHHHHH
Confidence 334456777765567777777777777744
No 58
>1kn1_B Allophycocyanin; helix-turn-helix, electron transport; HET: CYC; 2.20A {Porphyra yezoensis} SCOP: a.1.1.3 PDB: 1all_B* 3dbj_B* 2v8a_B* 1b33_B* 2vjt_B*
Probab=20.39 E-value=1e+02 Score=22.25 Aligned_cols=58 Identities=12% Similarity=0.216 Sum_probs=37.9
Q ss_pred chhhHHHhhhhccc--chhccccchh-----HHHHHHHhhhcccccccHHHHHHHHHHHHHHHHH
Q psy15118 46 TVALREIRRYQKST--ELLIRKLPFQ-----RLVREIAQDFKTDLRFQSSAVMALQEASEAYLVG 103 (132)
Q Consensus 46 ~~al~EIr~~Qkst--~llI~k~pF~-----rlVreI~~~~~~~~r~~~~Al~aLQeaaE~~Lv~ 103 (132)
..++|.+..|-+-. .++.--..+- .=++||...+.-+..+...+|..|++++..+|..
T Consensus 79 ~~ClRD~~~~LR~itYa~lagd~~~L~e~~L~glreiy~algvp~~~~~~~~~~mk~~~~~~l~~ 143 (161)
T 1kn1_B 79 AACIRDLDYYLRYATYAMLAGDPSILDERVLNGLKETYNSLGVPIGATIQAIQAMKEVTSGLVGP 143 (161)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTSTHHHHHHTSTTHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHCH
T ss_pred HHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHcCH
Confidence 36777777765421 1222222222 2347888777778888899999999988877755
Done!