Query psy15119
Match_columns 96
No_of_seqs 121 out of 577
Neff 7.0
Searched_HMMs 29240
Date Fri Aug 16 21:04:35 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy15119.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/15119hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1tzy_A Histone H2A-IV; histone 100.0 7.1E-41 2.4E-45 222.5 5.3 96 1-96 1-97 (129)
2 2f8n_G Core histone macro-H2A. 100.0 1.2E-40 3.9E-45 219.2 4.9 94 1-96 1-94 (120)
3 2nqb_C Histone H2A; nucleosome 100.0 1.6E-40 5.6E-45 219.3 5.2 95 2-96 1-95 (123)
4 2f8n_K Histone H2A type 1; nuc 100.0 4.5E-40 1.5E-44 222.8 5.5 96 1-96 20-116 (149)
5 1id3_C Histone H2A.1; nucleoso 100.0 2.7E-38 9.3E-43 210.5 7.4 91 6-96 7-97 (131)
6 1f66_C Histone H2A.Z; nucleoso 100.0 1.2E-38 4E-43 211.6 5.4 96 1-96 1-100 (128)
7 2jss_A Chimera of histone H2B. 100.0 9.9E-33 3.4E-37 193.6 6.2 84 13-96 94-178 (192)
8 1jfi_A Transcription regulator 99.9 2.4E-27 8.3E-32 150.8 6.3 80 17-96 4-83 (98)
9 3ksy_A SOS-1, SON of sevenless 99.9 6.1E-26 2.1E-30 188.5 4.6 82 13-95 93-174 (1049)
10 1n1j_B NF-YC; histone-like PAI 99.9 3.6E-23 1.2E-27 131.2 7.6 78 19-96 14-91 (97)
11 2yfw_B Histone H4, H4; cell cy 99.9 1.6E-22 5.5E-27 129.5 7.6 89 1-92 1-96 (103)
12 4g92_C HAPE; transcription fac 99.9 1.7E-22 5.7E-27 132.4 7.6 75 22-96 39-113 (119)
13 1tzy_D Histone H4-VI; histone- 99.9 2.8E-22 9.4E-27 128.4 8.3 89 1-92 1-96 (103)
14 2byk_A Chrac-16; nucleosome sl 99.8 5.1E-21 1.7E-25 128.4 5.2 84 13-96 8-92 (140)
15 1f1e_A Histone fold protein; a 99.7 1.1E-16 3.7E-21 108.8 7.0 71 19-90 77-147 (154)
16 1id3_B Histone H4; nucleosome 99.6 1.1E-15 3.7E-20 97.6 8.1 78 10-90 16-93 (102)
17 1ku5_A HPHA, archaeal histon; 99.5 2E-14 6.9E-19 85.7 6.7 66 23-89 5-70 (70)
18 1b67_A Protein (histone HMFA); 99.5 2.2E-14 7.6E-19 84.9 6.8 64 24-88 2-65 (68)
19 1n1j_A NF-YB; histone-like PAI 99.4 6.9E-13 2.4E-17 82.9 7.4 68 21-88 5-73 (93)
20 2hue_C Histone H4; mini beta s 99.4 3.7E-12 1.3E-16 78.5 8.2 72 16-90 4-75 (84)
21 2byk_B Chrac-14; nucleosome sl 99.3 4E-12 1.4E-16 83.9 6.2 74 22-95 7-81 (128)
22 3b0c_W CENP-W, centromere prot 99.3 1.4E-11 4.9E-16 74.4 7.1 66 23-88 3-68 (76)
23 1f1e_A Histone fold protein; a 99.2 1.8E-11 6E-16 83.1 7.0 65 24-88 4-68 (154)
24 1taf_B TFIID TBP associated fa 99.2 4.7E-11 1.6E-15 71.4 7.0 66 22-88 4-69 (70)
25 3b0c_T CENP-T, centromere prot 99.1 9.8E-11 3.3E-15 75.5 5.9 73 22-95 5-77 (111)
26 1taf_A TFIID TBP associated fa 99.0 1.8E-09 6.3E-14 64.1 6.9 61 28-89 5-65 (68)
27 1jfi_B DR1 protein, transcript 98.9 2.7E-09 9.3E-14 73.8 6.6 71 18-88 9-79 (179)
28 2hue_B Histone H3; mini beta s 98.7 3.8E-08 1.3E-12 59.7 6.5 66 23-88 2-71 (77)
29 2ly8_A Budding yeast chaperone 98.7 9E-08 3.1E-12 62.5 7.4 52 38-89 60-111 (121)
30 2l5a_A Histone H3-like centrom 98.6 4.6E-08 1.6E-12 70.0 5.8 59 30-89 167-225 (235)
31 3nqj_A Histone H3-like centrom 98.6 8.4E-08 2.9E-12 58.8 6.2 66 23-88 2-73 (82)
32 4dra_A Centromere protein S; D 98.6 6.9E-08 2.4E-12 62.3 4.8 71 20-94 26-99 (113)
33 3b0b_B CENP-S, centromere prot 98.5 1.6E-07 5.4E-12 60.2 5.1 73 20-93 18-90 (107)
34 2yfv_A Histone H3-like centrom 98.5 2.6E-07 8.9E-12 58.5 5.9 68 21-88 24-98 (100)
35 3v9r_A MHF1, uncharacterized p 98.5 2.2E-07 7.4E-12 57.8 5.0 74 20-94 11-84 (90)
36 1tzy_C Histone H3; histone-fol 98.5 5.3E-07 1.8E-11 59.9 6.7 68 21-88 59-130 (136)
37 3nqu_A Histone H3-like centrom 98.4 4.1E-07 1.4E-11 60.6 6.1 68 21-88 58-131 (140)
38 3r45_A Histone H3-like centrom 98.4 3.5E-07 1.2E-11 61.8 5.4 68 21-88 74-147 (156)
39 3vh5_A CENP-S; histone fold, c 98.3 7.2E-07 2.5E-11 59.4 4.2 74 20-94 18-91 (140)
40 2nqb_D Histone H2B; nucleosome 98.3 1.9E-06 6.6E-11 56.2 6.0 64 24-88 34-97 (123)
41 1tzy_B Histone H2B; histone-fo 98.2 2.8E-06 9.6E-11 55.6 6.0 65 23-88 36-100 (126)
42 2jss_A Chimera of histone H2B. 97.9 2.9E-05 9.9E-10 53.9 6.1 60 29-88 8-67 (192)
43 1bh9_B TAFII28; histone fold, 97.6 0.00024 8.1E-09 43.9 6.2 64 24-88 16-80 (89)
44 4dra_E Centromere protein X; D 97.4 0.00086 3E-08 41.0 7.3 68 20-87 8-77 (84)
45 3b0b_C CENP-X, centromere prot 97.4 0.00089 3.1E-08 40.6 7.0 65 22-86 6-72 (81)
46 1h3o_B Transcription initiatio 96.8 0.0046 1.6E-07 37.0 6.3 68 24-91 5-72 (76)
47 2l5a_A Histone H3-like centrom 95.9 0.0098 3.4E-07 42.5 4.5 67 22-88 9-82 (235)
48 1wwi_A Hypothetical protein TT 92.8 0.24 8.2E-06 33.0 5.2 59 24-83 2-60 (148)
49 1r4v_A Hypothetical protein AQ 92.1 0.09 3.1E-06 35.8 2.5 59 24-83 26-84 (171)
50 1khy_A CLPB protein; alpha hel 90.8 0.42 1.4E-05 30.2 4.7 33 59-91 10-42 (148)
51 3fes_A ATP-dependent CLP endop 90.6 0.3 1E-05 31.3 3.9 33 59-91 12-44 (145)
52 3fh2_A Probable ATP-dependent 90.2 0.36 1.2E-05 30.8 4.0 32 59-90 11-42 (146)
53 2y1q_A CLPC N-domain, negative 89.0 0.48 1.6E-05 30.0 3.9 33 59-91 10-42 (150)
54 3fes_A ATP-dependent CLP endop 88.4 0.59 2E-05 29.8 4.0 33 59-91 86-118 (145)
55 3fh2_A Probable ATP-dependent 87.9 0.66 2.3E-05 29.5 4.0 32 60-91 87-118 (146)
56 1k6k_A ATP-dependent CLP prote 87.8 0.63 2.1E-05 29.2 3.8 34 59-92 6-39 (143)
57 3zri_A CLPB protein, CLPV; cha 87.3 0.76 2.6E-05 30.6 4.2 33 59-91 29-61 (171)
58 1k6k_A ATP-dependent CLP prote 85.6 1.3 4.5E-05 27.7 4.4 33 59-91 84-116 (143)
59 3v9r_B MHF2, uncharacterized p 84.0 5.3 0.00018 24.2 6.9 61 25-85 2-71 (88)
60 2y1q_A CLPC N-domain, negative 83.6 1.5 5E-05 27.7 4.0 33 59-91 84-116 (150)
61 3zri_A CLPB protein, CLPV; cha 83.4 1.5 5.3E-05 29.1 4.2 32 60-91 104-136 (171)
62 1khy_A CLPB protein; alpha hel 78.5 2.8 9.7E-05 26.2 4.0 31 59-89 87-117 (148)
63 2v1u_A Cell division control p 74.9 14 0.00049 25.7 7.3 62 27-88 203-274 (387)
64 3kw6_A 26S protease regulatory 71.2 6.7 0.00023 22.1 4.0 37 49-89 36-72 (78)
65 3pxg_A Negative regulator of g 69.2 5.2 0.00018 30.2 4.0 34 59-92 84-117 (468)
66 3pxg_A Negative regulator of g 68.8 5.2 0.00018 30.1 4.0 33 59-91 10-42 (468)
67 1g8p_A Magnesium-chelatase 38 65.9 16 0.00055 25.4 5.9 47 42-88 267-320 (350)
68 2dzn_B 26S protease regulatory 63.7 14 0.00048 21.0 4.4 46 40-89 22-67 (82)
69 3pxi_A Negative regulator of g 63.4 7.3 0.00025 31.0 4.0 33 59-91 10-42 (758)
70 2qby_A CDC6 homolog 1, cell di 61.5 24 0.00082 24.5 6.1 49 41-89 217-271 (386)
71 1r6b_X CLPA protein; AAA+, N-t 60.7 9.5 0.00032 30.2 4.2 34 59-92 6-39 (758)
72 3pxi_A Negative regulator of g 60.5 8.9 0.00031 30.5 4.0 34 59-92 84-117 (758)
73 3uk6_A RUVB-like 2; hexameric 58.1 26 0.00088 24.6 5.8 49 41-89 277-329 (368)
74 3k1j_A LON protease, ATP-depen 57.9 28 0.00097 26.9 6.4 30 60-89 345-374 (604)
75 1qvr_A CLPB protein; coiled co 57.1 12 0.0004 30.3 4.2 33 59-91 10-42 (854)
76 2vxz_A Pyrsv_GP04; viral prote 55.5 28 0.00096 23.3 5.2 36 58-93 75-110 (165)
77 1r6b_X CLPA protein; AAA+, N-t 54.8 14 0.00049 29.2 4.3 33 59-91 84-116 (758)
78 3vlf_B 26S protease regulatory 53.5 22 0.00075 20.5 4.1 39 47-89 32-70 (88)
79 2krk_A 26S protease regulatory 52.5 23 0.00078 20.5 4.0 45 41-89 36-80 (86)
80 1lv7_A FTSH; alpha/beta domain 52.0 22 0.00076 23.8 4.5 27 62-88 224-250 (257)
81 3aji_B S6C, proteasome (prosom 51.6 18 0.00061 20.4 3.4 41 45-89 30-70 (83)
82 3h4m_A Proteasome-activating n 46.5 30 0.001 23.3 4.5 29 61-89 229-257 (285)
83 1ixz_A ATP-dependent metallopr 45.3 26 0.0009 23.3 4.0 26 62-87 228-253 (254)
84 1iy2_A ATP-dependent metallopr 44.4 27 0.00092 23.8 4.0 26 62-87 252-277 (278)
85 3f9v_A Minichromosome maintena 44.1 23 0.00079 27.6 3.9 48 41-88 520-585 (595)
86 1qvr_A CLPB protein; coiled co 40.0 28 0.00096 28.2 3.9 34 59-92 87-120 (854)
87 4gqb_C Histone H4 peptide; TIM 39.9 14 0.00048 16.9 1.3 9 2-10 2-10 (26)
88 1f6v_A DNA transposition prote 38.9 7.6 0.00026 23.7 0.3 29 59-88 49-77 (91)
89 2c9o_A RUVB-like 1; hexameric 38.8 33 0.0011 25.5 3.9 61 28-88 369-435 (456)
90 2qby_B CDC6 homolog 3, cell di 38.7 91 0.0031 21.7 6.1 60 28-89 200-269 (384)
91 2r44_A Uncharacterized protein 37.3 48 0.0017 23.0 4.4 28 61-88 268-295 (331)
92 2ly8_A Budding yeast chaperone 36.4 48 0.0017 21.0 3.9 42 40-81 24-68 (121)
93 3bos_A Putative DNA replicatio 31.8 61 0.0021 20.7 4.0 47 42-89 193-242 (242)
94 3tl4_X Glutaminyl-tRNA synthet 31.2 43 0.0015 22.6 3.2 42 47-89 84-128 (187)
95 1fnn_A CDC6P, cell division co 29.7 86 0.0029 21.8 4.7 31 59-89 243-273 (389)
96 3f8t_A Predicted ATPase involv 29.0 68 0.0023 25.1 4.3 64 25-88 394-481 (506)
97 2v6z_M DNA polymerase epsilon 28.2 44 0.0015 20.4 2.5 71 18-88 16-96 (99)
98 4b4t_I 26S protease regulatory 27.2 83 0.0029 24.0 4.5 24 65-88 398-421 (437)
99 4b4t_J 26S protease regulatory 26.9 85 0.0029 23.6 4.4 24 65-88 364-387 (405)
100 4b4t_L 26S protease subunit RP 26.0 90 0.0031 23.6 4.5 25 65-89 397-421 (437)
101 4b4t_K 26S protease regulatory 24.5 89 0.003 23.5 4.2 27 63-89 387-413 (428)
102 2l09_A ASR4154 protein; proto- 21.8 75 0.0026 17.7 2.5 26 64-89 26-51 (62)
103 1in4_A RUVB, holliday junction 21.3 1.2E+02 0.0043 21.2 4.3 29 60-88 220-248 (334)
104 4b4t_M 26S protease regulatory 20.9 1.2E+02 0.004 22.9 4.2 24 66-89 398-421 (434)
No 1
>1tzy_A Histone H2A-IV; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1eqz_A 1hq3_A 2aro_A 2hio_A 3c9k_A 3azg_C 3a6n_C 3an2_C 3av1_C 3av2_C 3ayw_C 3aze_C 3azf_C 3afa_C 3azh_C 3azi_C 3azj_C 3azk_C 3azl_C 3azm_C ...
Probab=100.00 E-value=7.1e-41 Score=222.50 Aligned_cols=96 Identities=93% Similarity=1.362 Sum_probs=82.2
Q ss_pred CCCCCC-CCCCCccccCcccccCcccchhhhhhhhhcCCcccccCCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccc
Q psy15119 1 MSGRGK-GGKAKAKSKTRSSRAGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRII 79 (96)
Q Consensus 1 m~~~~~-~~~~~~~~~s~s~ra~l~fpv~ri~r~lk~~~~~~ris~~A~v~laavLEyl~~eIlela~~~a~~~~~k~It 79 (96)
|||+|+ +++++++.+|+|+|+||+|||+||+|||+++++++||+++|+|||+||||||++||+|+|+|.|+++++++|+
T Consensus 1 m~~~~~~~~~~~~~~~srS~ragLqfPV~rI~R~Lk~~~~a~RVs~~A~VyLaAvLEyL~aEIlelAgn~A~~~k~krIt 80 (129)
T 1tzy_A 1 MSGRGKQGGKARAKAKSRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRII 80 (129)
T ss_dssp -------------CCCCHHHHHTCSSCHHHHHHHHHHTTSSSEECTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEEC
T ss_pred CCCCCCCCCCCCCCCCCccccCceeccHHHHHHHHHccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeEc
Confidence 899987 6677778899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcchhcCCC
Q psy15119 80 PRHLQLAIRNDEELNKL 96 (96)
Q Consensus 80 p~~i~~ai~~d~eL~~L 96 (96)
|+||++||+||+||++|
T Consensus 81 p~hi~lAI~nDeEL~~L 97 (129)
T 1tzy_A 81 PRHLQLAIRNDEELNKL 97 (129)
T ss_dssp HHHHHHHHHTSHHHHHH
T ss_pred HHHHHHHHhccHHHHHH
Confidence 99999999999999875
No 2
>2f8n_G Core histone macro-H2A.1; nucleosome, NCP, macroh2A, histone variant, chromatin, X- RAY structure, crystallography, structural protein/DNA complex; 2.90A {Homo sapiens} SCOP: a.22.1.1 PDB: 1u35_C
Probab=100.00 E-value=1.2e-40 Score=219.18 Aligned_cols=94 Identities=63% Similarity=0.998 Sum_probs=82.8
Q ss_pred CCCCCCCCCCCccccCcccccCcccchhhhhhhhhcCCcccccCCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccH
Q psy15119 1 MSGRGKGGKAKAKSKTRSSRAGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIP 80 (96)
Q Consensus 1 m~~~~~~~~~~~~~~s~s~ra~l~fpv~ri~r~lk~~~~~~ris~~A~v~laavLEyl~~eIlela~~~a~~~~~k~Itp 80 (96)
||||| +|++++++|+|+|+||||||+||+|||+++.+++||+++|+|||+||||||++||+|+|+|.|+++++++|+|
T Consensus 1 m~~~~--~~~~~~~~srs~ragLqfPV~ri~R~Lk~~~~a~RV~~~A~VyLaAvLEyL~aEIlelAgn~A~~~k~~rItp 78 (120)
T 2f8n_G 1 MSSRG--GKKKSTKTSRSAKAGVIFPVGRMLRYIKKGHPKYRIGVGAPVYMAAVLEYLTAEILELAVNAARDNKKGRVTP 78 (120)
T ss_dssp -----------CCCCCHHHHHTCSSCHHHHHHHHHHHSSSCEECTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECH
T ss_pred CCCCC--CCCCcCCcCcccccCccCChHHHHHHHHcCccccccccchHHHHHHHHHHHHHHHHHHHHHHHhhcCCceEcH
Confidence 89886 5666788999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcchhcCCC
Q psy15119 81 RHLQLAIRNDEELNKL 96 (96)
Q Consensus 81 ~~i~~ai~~d~eL~~L 96 (96)
+||++||+||+||++|
T Consensus 79 ~hi~lAI~nDeEL~~L 94 (120)
T 2f8n_G 79 RHILLAVANDEELNQL 94 (120)
T ss_dssp HHHHHHHHTSHHHHHH
T ss_pred HHHHHHHhcCHHHHHH
Confidence 9999999999999865
No 3
>2nqb_C Histone H2A; nucleosome, NCP, chromatin, structural protein/DNA complex; 2.30A {Drosophila melanogaster} PDB: 2pyo_C*
Probab=100.00 E-value=1.6e-40 Score=219.25 Aligned_cols=95 Identities=95% Similarity=1.360 Sum_probs=81.4
Q ss_pred CCCCCCCCCCccccCcccccCcccchhhhhhhhhcCCcccccCCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccHH
Q psy15119 2 SGRGKGGKAKAKSKTRSSRAGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPR 81 (96)
Q Consensus 2 ~~~~~~~~~~~~~~s~s~ra~l~fpv~ri~r~lk~~~~~~ris~~A~v~laavLEyl~~eIlela~~~a~~~~~k~Itp~ 81 (96)
|||||++|++++.+|+|+|+||+|||+||+|||+++++++||+++|+|||+||||||++||+|+|+|.|+++++++|+|+
T Consensus 1 ~~~~~~~~~~~~~~s~s~ragL~fPV~ri~R~Lk~~~~a~RV~~~A~VyLaAvLEyL~aEIlelAgn~A~~~k~krItp~ 80 (123)
T 2nqb_C 1 SGRGKGGKVKGKAKSRSNRAGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPR 80 (123)
T ss_dssp ------------CCCHHHHHTCSSCHHHHHHHHHHTTSCSEECTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHH
T ss_pred CCCCCCCCCCCCCCCccccCCeeccHHHHHHHHHccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccHH
Confidence 57888888888899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcchhcCCC
Q psy15119 82 HLQLAIRNDEELNKL 96 (96)
Q Consensus 82 ~i~~ai~~d~eL~~L 96 (96)
||++||+||+||++|
T Consensus 81 hi~lAI~nDeEL~~L 95 (123)
T 2nqb_C 81 HLQLAIRNDEELNKL 95 (123)
T ss_dssp HHHHHHHTSHHHHHH
T ss_pred HHHHHHhccHHHHHH
Confidence 999999999999875
No 4
>2f8n_K Histone H2A type 1; nucleosome, NCP, macroh2A, histone variant, chromatin, X- RAY structure, crystallography, structural protein/DNA complex; 2.90A {Mus musculus} SCOP: a.22.1.1
Probab=100.00 E-value=4.5e-40 Score=222.82 Aligned_cols=96 Identities=92% Similarity=1.335 Sum_probs=81.4
Q ss_pred CCCCCCC-CCCCccccCcccccCcccchhhhhhhhhcCCcccccCCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccc
Q psy15119 1 MSGRGKG-GKAKAKSKTRSSRAGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRII 79 (96)
Q Consensus 1 m~~~~~~-~~~~~~~~s~s~ra~l~fpv~ri~r~lk~~~~~~ris~~A~v~laavLEyl~~eIlela~~~a~~~~~k~It 79 (96)
|||+|++ +|++++.+|+|+|+||||||+||+|||+++++++||+++|+|||+||||||++||+|+|+|+|+++++++|+
T Consensus 20 ~~~~~~~~~~~~~k~~srS~ragLqFPVgrI~R~LK~~~~a~RVs~~A~VyLAAVLEYL~aEILelAgn~A~~~krkrIt 99 (149)
T 2f8n_K 20 MSGRGKQGGKARAKAKTRSSRAGLQFPVGRVHRLLRKGNYSERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRII 99 (149)
T ss_dssp --------------CCCHHHHHTCSSCHHHHHHHHHHTTSCSEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEEC
T ss_pred cccCCCCCCCCCCCCCCccccCCeeccHHHHHHHHHccccccccCcCcHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCc
Confidence 8888875 677778899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcchhcCCC
Q psy15119 80 PRHLQLAIRNDEELNKL 96 (96)
Q Consensus 80 p~~i~~ai~~d~eL~~L 96 (96)
|+||++||+||+||++|
T Consensus 100 prhI~lAI~nDeEL~~L 116 (149)
T 2f8n_K 100 PRHLQLAIRNDEELNKL 116 (149)
T ss_dssp HHHHHHHHHHSHHHHHH
T ss_pred HHHHHHHHhccHHHHHH
Confidence 99999999999999865
No 5
>1id3_C Histone H2A.1; nucleosome core particle, chromatin, protein/DNA interaction, nucleoprotein, supercoiled DNA; 3.10A {Saccharomyces cerevisiae} SCOP: a.22.1.1
Probab=100.00 E-value=2.7e-38 Score=210.53 Aligned_cols=91 Identities=79% Similarity=1.239 Sum_probs=80.5
Q ss_pred CCCCCCccccCcccccCcccchhhhhhhhhcCCcccccCCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccHHHHHH
Q psy15119 6 KGGKAKAKSKTRSSRAGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQL 85 (96)
Q Consensus 6 ~~~~~~~~~~s~s~ra~l~fpv~ri~r~lk~~~~~~ris~~A~v~laavLEyl~~eIlela~~~a~~~~~k~Itp~~i~~ 85 (96)
+++|.+++.+|+|+|+||+|||+||+|||+++.+++||+++|+|||+||||||++||+|+|+|+|+++++++|+|+||++
T Consensus 7 ~~~~~~~~~~srS~ragLqfPV~rI~R~Lk~~~~a~RVs~~A~VyLaAvLEyL~aEIlelAgn~A~~~k~krItp~hI~l 86 (131)
T 1id3_C 7 KAGSAAKASQSRSAKAGLTFPVGRVHRLLRRGNYAQRIGSGAPVYLTAVLEYLAAEILELAGNAARDNKKTRIIPRHLQL 86 (131)
T ss_dssp ---------CCTTGGGTCSSCHHHHHHHHHTTCSCSEECSSHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHH
T ss_pred CCCCCCCCCCCccccCCeecCHHHHHHHHHccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHhhcCCceEcHHHHHH
Confidence 34556678899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcchhcCCC
Q psy15119 86 AIRNDEELNKL 96 (96)
Q Consensus 86 ai~~d~eL~~L 96 (96)
||+||+||++|
T Consensus 87 AI~nDeEL~~L 97 (131)
T 1id3_C 87 AIRNDDELNKL 97 (131)
T ss_dssp HHHTCHHHHHH
T ss_pred HHhccHHHHHH
Confidence 99999999875
No 6
>1f66_C Histone H2A.Z; nucleosome, chromatin, histone variant, protein DNA interaction, nucleoprotein, supercoiled DNA, complex (nucleosome core/DNA); 2.60A {Homo sapiens} SCOP: a.22.1.1
Probab=100.00 E-value=1.2e-38 Score=211.59 Aligned_cols=96 Identities=67% Similarity=0.959 Sum_probs=80.3
Q ss_pred CCCCC--C-CCCCCccccCcccccCcccchhhhhhhhhcCCcc-cccCCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q psy15119 1 MSGRG--K-GGKAKAKSKTRSSRAGLQFPVGRIHRLLRKGNYA-ERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKT 76 (96)
Q Consensus 1 m~~~~--~-~~~~~~~~~s~s~ra~l~fpv~ri~r~lk~~~~~-~ris~~A~v~laavLEyl~~eIlela~~~a~~~~~k 76 (96)
|||+. + +++.+++.+|+|+|+||||||+||+|||+++.++ +||+++|+|||+||||||++||+|+|+|+|++++++
T Consensus 1 m~~~~~~~~~~~~~~~~~srS~ragLqfPV~ri~R~Lk~~~~a~~RV~~~A~VyLaAvLEyL~aEIlelAgn~A~~~k~k 80 (128)
T 1f66_C 1 MAGGKAGKDSGKAKTKAVSRSQRAGLQFPVGRIHRHLKSRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVK 80 (128)
T ss_dssp ----------------CCCHHHHHTCSSCHHHHHHHHHHTSCSSCEECTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCS
T ss_pred CCCCCCCCCCCCcCCCCcCccccCCccCChHHHHHHHHHcccchhhccccHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 77552 2 2445667889999999999999999999998876 699999999999999999999999999999999999
Q ss_pred cccHHHHHHHHhcchhcCCC
Q psy15119 77 RIIPRHLQLAIRNDEELNKL 96 (96)
Q Consensus 77 ~Itp~~i~~ai~~d~eL~~L 96 (96)
+|+|+||++||+||+||++|
T Consensus 81 rItprhi~lAI~nDeEL~~L 100 (128)
T 1f66_C 81 RITPRHLQLAIRGDEELDSL 100 (128)
T ss_dssp EECHHHHHHHHHHSHHHHHH
T ss_pred eEcHHHHHHHHhccHHHhhh
Confidence 99999999999999999875
No 7
>2jss_A Chimera of histone H2B.1 and histone H2A.Z; histone/chaperone complex, intrinsically unfolded protein, chaperone/structural protein complex; NMR {Saccharomyces cerevisiae} SCOP: a.22.1.1 a.22.1.1
Probab=99.97 E-value=9.9e-33 Score=193.58 Aligned_cols=84 Identities=63% Similarity=0.975 Sum_probs=80.3
Q ss_pred cccCcccccCcccchhhhhhhhhcCCcc-cccCCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHhcch
Q psy15119 13 KSKTRSSRAGLQFPVGRIHRLLRKGNYA-ERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIRNDE 91 (96)
Q Consensus 13 ~~~s~s~ra~l~fpv~ri~r~lk~~~~~-~ris~~A~v~laavLEyl~~eIlela~~~a~~~~~k~Itp~~i~~ai~~d~ 91 (96)
+.+++|+|+||+|||+||+|+|++++++ +||+++|+|||+||||||++||+|+|+|.|+++++++|+|+||++||+||+
T Consensus 94 ~~~s~s~ragl~fPv~ri~R~lk~~~~a~~Rv~~~A~vyLaavLEyl~~eIlelA~n~a~~~~~~~I~p~~i~lAi~nD~ 173 (192)
T 2jss_A 94 QAQSSSARAGLQFPVGRIKRYLKRHATGRTRVGSKAAIYLTAVLEYLTAEVLELAGNAAKDLKVKRITPRHLQLAIRGDD 173 (192)
T ss_dssp SSSCHHHHSSCCSCHHHHHHHHHHTTCSSCCCCTTTHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHHHHHHTSH
T ss_pred ccccccccCCCcCCHHHHHHHHHhcCccccccccChHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCHHHHHHHHhccH
Confidence 5679999999999999999999998786 799999999999999999999999999999999999999999999999999
Q ss_pred hcCCC
Q psy15119 92 ELNKL 96 (96)
Q Consensus 92 eL~~L 96 (96)
||++|
T Consensus 174 eL~~L 178 (192)
T 2jss_A 174 ELDSL 178 (192)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 99865
No 8
>1jfi_A Transcription regulator NC2 alpha chain; histone, H2A/H2B, tata-DNA, transcription initiation, NC2, negative cofactor, structural genomics, PSI; 2.62A {Homo sapiens} SCOP: a.22.1.3
Probab=99.94 E-value=2.4e-27 Score=150.80 Aligned_cols=80 Identities=18% Similarity=0.358 Sum_probs=62.4
Q ss_pred cccccCcccchhhhhhhhhcCCcccccCCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHhcchhcCCC
Q psy15119 17 RSSRAGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIRNDEELNKL 96 (96)
Q Consensus 17 ~s~ra~l~fpv~ri~r~lk~~~~~~ris~~A~v~laavLEyl~~eIlela~~~a~~~~~k~Itp~~i~~ai~~d~eL~~L 96 (96)
++.+++++||++||+|+||.+.+..|||.+|++|+++++|||+.||+++|++.|.++++++|+|+||..||++|++|++|
T Consensus 4 ~~kk~~~~fPvaRIkrimK~~~~~~~vs~~A~v~la~a~E~Fi~el~~~A~~~a~~~krktI~~~di~~av~~~e~l~FL 83 (98)
T 1jfi_A 4 KKKKYNARFPPARIKKIMQTDEEIGKVAAAVPVIISRALELFLESLLKKACQVTQSRNAKTMTTSHLKQCIELEGDPAAN 83 (98)
T ss_dssp ------CCCCHHHHHHHHTTSTTCCCBCTTHHHHHHHHHHHHHHHHHHHHHHHHHTC---CBCHHHHHTTCC--------
T ss_pred cccccCCCCChHHHHHHHHcCccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCeecHHHHHHHHhcCchhhHH
Confidence 45788999999999999999999999999999999999999999999999999999999999999999999999999997
No 9
>3ksy_A SOS-1, SON of sevenless homolog 1; RAS, RAS activator, disease mutation, guanine-nucleotide releasing factor, signaling protein; 3.18A {Homo sapiens} PDB: 1xd4_A 1xdv_A 1q9c_A
Probab=99.92 E-value=6.1e-26 Score=188.51 Aligned_cols=82 Identities=32% Similarity=0.547 Sum_probs=78.0
Q ss_pred cccCcccccCcccchhhhhhhhhcCCcccccCCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHhcchh
Q psy15119 13 KSKTRSSRAGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIRNDEE 92 (96)
Q Consensus 13 ~~~s~s~ra~l~fpv~ri~r~lk~~~~~~ris~~A~v~laavLEyl~~eIlela~~~a~~~~~k~Itp~~i~~ai~~d~e 92 (96)
.-.|+|+||||+||||||+|+| ++.+++||+++|||||+||||||++||||+|||+|++.++++|+|+||++|+++|+|
T Consensus 93 ~~~~~~~~~~l~~pv~~~~~~l-~~~~~~r~~~~~~~y~~avleyl~~~~l~la~~~~~~~~~~~i~p~~~~~ai~~d~e 171 (1049)
T 3ksy_A 93 AIEKRKRRNPLSLPVEKIHPLL-KEVLGYKIDHQVSVYIVAVLEYISADILKLVGNYVRNIRHYEITKQDIKVAMCADKV 171 (1049)
T ss_dssp HHTTCCCSSSCSSCHHHHHHHH-HHHHCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCBCCHHHHHHHHHHCSS
T ss_pred hhhcccccCCccccHHHHHHHh-hcccccccCCCCcchhHHHHHHHHHHHHHHHHHHHHHcCCceecCccccccccCCHH
Confidence 4468999999999999999999 779999999999999999999999999999999999999999999999999999999
Q ss_pred cCC
Q psy15119 93 LNK 95 (96)
Q Consensus 93 L~~ 95 (96)
|+.
T Consensus 172 L~~ 174 (1049)
T 3ksy_A 172 LMD 174 (1049)
T ss_dssp HHH
T ss_pred HHH
Confidence 864
No 10
>1n1j_B NF-YC; histone-like PAIR, DNA binding protein; 1.67A {Homo sapiens} SCOP: a.22.1.3
Probab=99.89 E-value=3.6e-23 Score=131.22 Aligned_cols=78 Identities=21% Similarity=0.313 Sum_probs=70.7
Q ss_pred cccCcccchhhhhhhhhcCCcccccCCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHhcchhcCCC
Q psy15119 19 SRAGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIRNDEELNKL 96 (96)
Q Consensus 19 ~ra~l~fpv~ri~r~lk~~~~~~ris~~A~v~laavLEyl~~eIlela~~~a~~~~~k~Itp~~i~~ai~~d~eL~~L 96 (96)
.-.+++||++||+|+||.+.+..+||.+|++|+++++|||+.++++.|++.|.+.++++|+|+||..||.+|++|++|
T Consensus 14 ~~~~~~lP~arIkrImK~~~~~~~is~eA~~~laka~E~Fi~~l~~~A~~~a~~~krktI~~~di~~Av~~~e~~~FL 91 (97)
T 1n1j_B 14 DFRVQELPLARIKKIMKLDEDVKMISAEAPVLFAKAAQIFITELTLRAWIHTEDNKRRTLQRNDIAMAITKFDQFDFL 91 (97)
T ss_dssp ------CCHHHHHHHHTTSTTCCCBCTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHTTCGGGGGG
T ss_pred CcCCCcCCHHHHHHHHccCccccccChHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCCHHHHHHHHhcCcHHHHH
Confidence 344789999999999999988899999999999999999999999999999999999999999999999999999987
No 11
>2yfw_B Histone H4, H4; cell cycle, kinetochore, centromere, histone chaperone, BUDD; 2.60A {Kluyveromyces lactis nrrl y-1140}
Probab=99.87 E-value=1.6e-22 Score=129.50 Aligned_cols=89 Identities=25% Similarity=0.377 Sum_probs=62.6
Q ss_pred CCCCCCCCC-------CCccccCcccccCcccchhhhhhhhhcCCcccccCCChHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy15119 1 MSGRGKGGK-------AKAKSKTRSSRAGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDN 73 (96)
Q Consensus 1 m~~~~~~~~-------~~~~~~s~s~ra~l~fpv~ri~r~lk~~~~~~ris~~A~v~laavLEyl~~eIlela~~~a~~~ 73 (96)
||||||++| ++++++++++.++ ||++.|+|+++... ..|||.+|..+|+.+|||++.+|++.|.++|+|+
T Consensus 1 m~~~gk~gkg~~~~~~kr~~~~~r~~~~g--ip~~~I~Rlar~~G-~~rIs~~a~~~l~~vle~~~~~V~~dA~~~a~ha 77 (103)
T 2yfw_B 1 MSGRGKGGKGLGKGGAKRHRKILRDNIQG--ITKPAIRRLARRGG-VKRISGLIYEEVRNVLKTFLESVIRDAVTYTEHA 77 (103)
T ss_dssp -------------------------------CCHHHHHHHHHHTT-CCEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCCCCCCCCCCCCccchhhhhhhhhcc--CCHHHHHHHHHHcC-ccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 898877655 3677778999988 99999999999965 4899999999999999999999999999999999
Q ss_pred CCCcccHHHHHHHHhcchh
Q psy15119 74 KKTRIIPRHLQLAIRNDEE 92 (96)
Q Consensus 74 ~~k~Itp~~i~~ai~~d~e 92 (96)
++++|+|+||.+|+++..+
T Consensus 78 kRktvt~~DV~~Alr~~g~ 96 (103)
T 2yfw_B 78 KRKTVTSLDVVYALKRQGR 96 (103)
T ss_dssp TCSEECHHHHHHHHHHHC-
T ss_pred CCCcCcHHHHHHHHHHcCC
Confidence 9999999999999986543
No 12
>4g92_C HAPE; transcription factor, nucleosome, minor groove binding, CCAA complex, histone fold motif, specific binding to the ccaat- nucleus; HET: DNA; 1.80A {Aspergillus nidulans} PDB: 4g91_C*
Probab=99.87 E-value=1.7e-22 Score=132.38 Aligned_cols=75 Identities=21% Similarity=0.311 Sum_probs=72.5
Q ss_pred CcccchhhhhhhhhcCCcccccCCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHhcchhcCCC
Q psy15119 22 GLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIRNDEELNKL 96 (96)
Q Consensus 22 ~l~fpv~ri~r~lk~~~~~~ris~~A~v~laavLEyl~~eIlela~~~a~~~~~k~Itp~~i~~ai~~d~eL~~L 96 (96)
..+||++||+|+||.+.+..+||.+|++|+++++|||+.+|++.|++.|...++++|+|+||..||.+|++|++|
T Consensus 39 ~~~lPvaRIkrImK~d~~~~~is~eA~v~la~a~E~Fi~~L~~~A~~~a~~~krktI~~~di~~Av~~~e~~dFL 113 (119)
T 4g92_C 39 IHQLPLARIKKVMKADPEVKMISAEAPILFAKGCDVFITELTMRAWIHAEDNKRRTLQRSDIAAALSKSDMFDFL 113 (119)
T ss_dssp CCSSCHHHHHHHHHTSTTCCEECTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHTTCGGGGGG
T ss_pred cCCCCHHHHHHHHhhCCccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCccCHHHHHHHHhcCchhhHH
Confidence 357999999999999999999999999999999999999999999999999999999999999999999999987
No 13
>1tzy_D Histone H4-VI; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1f66_B 1eqz_D 1hq3_D 1u35_B 2aro_D 2cv5_B* 2f8n_B 3nqu_B 3r45_B 3azg_B 3a6n_B 3an2_B 3av1_B 3av2_B 3ayw_B 3aze_B 3azf_B 3afa_B 3azh_B 3azk_B ...
Probab=99.87 E-value=2.8e-22 Score=128.37 Aligned_cols=89 Identities=25% Similarity=0.377 Sum_probs=70.9
Q ss_pred CCCCCCCCC-------CCccccCcccccCcccchhhhhhhhhcCCcccccCCChHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy15119 1 MSGRGKGGK-------AKAKSKTRSSRAGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDN 73 (96)
Q Consensus 1 m~~~~~~~~-------~~~~~~s~s~ra~l~fpv~ri~r~lk~~~~~~ris~~A~v~laavLEyl~~eIlela~~~a~~~ 73 (96)
||||||++| ++++++++++.++ ||++.|+|+++... ..|||.+|..+|+.+|||++.+|++.|.++|+|+
T Consensus 1 m~g~gk~~kg~~~~~~kr~~k~~r~~~~g--ip~~~I~Rlar~~G-~~rIs~~a~~~l~~vle~~~~~V~~dA~~~a~ha 77 (103)
T 1tzy_D 1 MSGRGKGGKGLGKGGAKRHRKVLRDNIQG--ITKPAIRRLARRGG-VKRISGLIYEETRGVLKVFLENVIRDAVTYTEHA 77 (103)
T ss_dssp --------------------CCCCCGGGG--SCHHHHHHHHHHTT-CCEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCCCCCCCCCCCCccccccchhhhccc--CCHHHHHHHHHHcC-ccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 888876554 3677789999988 89999999999965 5899999999999999999999999999999999
Q ss_pred CCCcccHHHHHHHHhcchh
Q psy15119 74 KKTRIIPRHLQLAIRNDEE 92 (96)
Q Consensus 74 ~~k~Itp~~i~~ai~~d~e 92 (96)
++++|+|+||.+|+++..+
T Consensus 78 kRktIt~~DV~~Alr~~g~ 96 (103)
T 1tzy_D 78 KRKTVTAMDVVYALKRQGR 96 (103)
T ss_dssp TCSEECHHHHHHHHHHTTC
T ss_pred CCCcCCHHHHHHHHHHcCC
Confidence 9999999999999986543
No 14
>2byk_A Chrac-16; nucleosome sliding, histone fold, DNA-binding protein; 2.4A {Drosophila melanogaster} SCOP: a.22.1.3 PDB: 2bym_A
Probab=99.82 E-value=5.1e-21 Score=128.41 Aligned_cols=84 Identities=12% Similarity=0.181 Sum_probs=61.4
Q ss_pred cccCcccccCcccchhhhhhhhhcCCcccccCCChHHHHHHHHHHHHHHHHHHHHHHH-HhcCCCcccHHHHHHHHhcch
Q psy15119 13 KSKTRSSRAGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAA-RDNKKTRIIPRHLQLAIRNDE 91 (96)
Q Consensus 13 ~~~s~s~ra~l~fpv~ri~r~lk~~~~~~ris~~A~v~laavLEyl~~eIlela~~~a-~~~~~k~Itp~~i~~ai~~d~ 91 (96)
+..+++.+.+++||++||+||||.+....+|+.+|+++++.++|+|+.++++.|++.| ...++++|++.||..||.+++
T Consensus 8 k~~s~~~~~~~~LPlaRIKrIMK~dpdv~~Is~eA~vliakA~ElFI~~Lt~~A~~~a~~~~kRKtI~~~Dl~~AV~~~e 87 (140)
T 2byk_A 8 PPVERPPTAETFLPLSRVRTIMKSSMDTGLITNEVLFLMTKCTELFVRHLAGAAYTEEFGQRPGEALKYEHLSQVVNKNK 87 (140)
T ss_dssp ---------------------CCSSSSCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSCEECHHHHHHHHHTCS
T ss_pred CCCCCCcccCCCCCHHHHHHHHhcCcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccCHHHHHHHHhcCc
Confidence 4567888899999999999999999999999999999999999999999999999999 999999999999999999999
Q ss_pred hcCCC
Q psy15119 92 ELNKL 96 (96)
Q Consensus 92 eL~~L 96 (96)
+|+||
T Consensus 88 ~~dFL 92 (140)
T 2byk_A 88 NLEFL 92 (140)
T ss_dssp TTGGG
T ss_pred hhhhH
Confidence 99987
No 15
>1f1e_A Histone fold protein; archaeal histone protein, DNA binding protein; HET: MSE; 1.37A {Methanopyrus kandleri} SCOP: a.22.1.2
Probab=99.67 E-value=1.1e-16 Score=108.80 Aligned_cols=71 Identities=18% Similarity=0.219 Sum_probs=68.0
Q ss_pred cccCcccchhhhhhhhhcCCcccccCCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHhcc
Q psy15119 19 SRAGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIRND 90 (96)
Q Consensus 19 ~ra~l~fpv~ri~r~lk~~~~~~ris~~A~v~laavLEyl~~eIlela~~~a~~~~~k~Itp~~i~~ai~~d 90 (96)
.+.++.||++.|.|+||+. ++.|||++|.++|+.+||+|+.+|...|.++|+|.+||||+|+||.+|++++
T Consensus 77 d~~~l~lP~a~V~Ri~k~~-g~~RVS~~A~~~l~~~le~f~~~I~~~A~~~a~ha~RKTIt~eDV~~Al~~~ 147 (154)
T 1f1e_A 77 DYDGELFGRATVRRILKRA-GIERASSDAVDLYNKLICRATEELGEKAAEYADEDGRKTVQGEDVEKAITYS 147 (154)
T ss_dssp TCCSCCCCHHHHHHHHHHT-TCCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHH
T ss_pred ccccccCCccHHHHHHHHc-CCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHhc
Confidence 3788999999999999996 8899999999999999999999999999999999999999999999999875
No 16
>1id3_B Histone H4; nucleosome core particle, chromatin, protein/DNA interaction, nucleoprotein, supercoiled DNA; 3.10A {Saccharomyces cerevisiae} SCOP: a.22.1.1
Probab=99.63 E-value=1.1e-15 Score=97.61 Aligned_cols=78 Identities=17% Similarity=0.231 Sum_probs=65.0
Q ss_pred CCccccCcccccCcccchhhhhhhhhcCCcccccCCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHhc
Q psy15119 10 AKAKSKTRSSRAGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIRN 89 (96)
Q Consensus 10 ~~~~~~s~s~ra~l~fpv~ri~r~lk~~~~~~ris~~A~v~laavLEyl~~eIlela~~~a~~~~~k~Itp~~i~~ai~~ 89 (96)
++++++.+.+..+ +|.+.|.|+++.. ...|||.++...|+.++||++.+|+..|..+++|.++++|+++||.+|++.
T Consensus 16 kr~~k~~r~~i~~--ip~~~I~Rlar~~-Gv~rIS~da~~~l~~~le~fi~~I~~dA~~~a~HakRKTVt~~DV~~ALkr 92 (102)
T 1id3_B 16 KRHRKILRDNIQG--ITKPAIRRLARRG-GVKRISGLIYEEVRAVLKSFLESVIRDSVTYTEHAKRKTVTSLDVVYALKR 92 (102)
T ss_dssp --------CCGGG--SCHHHHHHHHHHT-TCCEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHH
T ss_pred chHHHHHHhccCC--CCHHHHHHHHHHc-CchhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCcHHHHHHHHHH
Confidence 4777888877777 6788899999994 679999999999999999999999999999999999999999999999985
Q ss_pred c
Q psy15119 90 D 90 (96)
Q Consensus 90 d 90 (96)
.
T Consensus 93 ~ 93 (102)
T 1id3_B 93 Q 93 (102)
T ss_dssp T
T ss_pred c
Confidence 4
No 17
>1ku5_A HPHA, archaeal histon; histone fold, DNA binding protein; 2.30A {Pyrococcus horikoshii} SCOP: a.22.1.2
Probab=99.53 E-value=2e-14 Score=85.73 Aligned_cols=66 Identities=32% Similarity=0.417 Sum_probs=62.5
Q ss_pred cccchhhhhhhhhcCCcccccCCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHhc
Q psy15119 23 LQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIRN 89 (96)
Q Consensus 23 l~fpv~ri~r~lk~~~~~~ris~~A~v~laavLEyl~~eIlela~~~a~~~~~k~Itp~~i~~ai~~ 89 (96)
..||.+.|+|++++. +..|+|.++...|..++|+++.+|++.|..+|.|.||++|+++||.+|+++
T Consensus 5 ~~lp~a~v~Rl~r~~-g~~ris~~a~~~l~e~~~~~~~~v~~dA~~~a~hakRkTI~~~DV~lA~~~ 70 (70)
T 1ku5_A 5 GELPIAPVDRLIRKA-GAERVSEQAAKVLAEYLEEYAIEIAKKAVEFARHAGRKTVKVEDIKLAIKS 70 (70)
T ss_dssp CCSCHHHHHHHHHHT-TCSEECHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCSEECHHHHHHHHTC
T ss_pred ccCChHHHHHHHHHc-CcceeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHHC
Confidence 368999999999995 679999999999999999999999999999999999999999999999874
No 18
>1b67_A Protein (histone HMFA); DNA binding protein; 1.48A {Methanothermus fervidus} SCOP: a.22.1.2 PDB: 1hta_A 1a7w_A 1b6w_A 1bfm_A
Probab=99.53 E-value=2.2e-14 Score=84.95 Aligned_cols=64 Identities=28% Similarity=0.431 Sum_probs=61.5
Q ss_pred ccchhhhhhhhhcCCcccccCCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHh
Q psy15119 24 QFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIR 88 (96)
Q Consensus 24 ~fpv~ri~r~lk~~~~~~ris~~A~v~laavLEyl~~eIlela~~~a~~~~~k~Itp~~i~~ai~ 88 (96)
.||.++|.|+||+. ...|||.+|...|..++|+|+.+|.+.|...|.+.+|+||+|+||..|++
T Consensus 2 ~lP~a~v~Ri~k~~-~~~ris~~A~~~l~~a~e~fi~~l~~~A~~~a~~~kRkTI~~~Di~~A~~ 65 (68)
T 1b67_A 2 ELPIAPIGRIIKNA-GAERVSDDARIALAKVLEEMGEEIASEAVKLAKHAGRKTIKAEDIELARK 65 (68)
T ss_dssp CSCHHHHHHHHHHT-TCSEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHGG
T ss_pred CCCccHHHHHHhcC-CcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHH
Confidence 48999999999997 77999999999999999999999999999999999999999999999985
No 19
>1n1j_A NF-YB; histone-like PAIR, DNA binding protein; 1.67A {Homo sapiens} SCOP: a.22.1.3
Probab=99.41 E-value=6.9e-13 Score=82.92 Aligned_cols=68 Identities=10% Similarity=0.257 Sum_probs=63.1
Q ss_pred cCcccchhhhhhhhhcC-CcccccCCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHh
Q psy15119 21 AGLQFPVGRIHRLLRKG-NYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIR 88 (96)
Q Consensus 21 a~l~fpv~ri~r~lk~~-~~~~ris~~A~v~laavLEyl~~eIlela~~~a~~~~~k~Itp~~i~~ai~ 88 (96)
..+.||.++|.|+||+. ....|||.+|...|..+.|.|+.+|...|...|.+.+|++|+++||..|++
T Consensus 5 ~d~~LP~a~i~ri~K~~~~~~~~is~dA~~~l~~a~e~Fi~~l~~~A~~~a~~~kRkTI~~~Dv~~Al~ 73 (93)
T 1n1j_A 5 QDIYLPIANVARIMKNAIPQTGKIAKDAKECVQECVSEFISFITSEASERCHQEKRKTINGEDILFAMS 73 (93)
T ss_dssp --CCCCHHHHHHHHHHTSCTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHH
T ss_pred ccccCChhHHHHHHHHhCCccceeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHH
Confidence 35789999999999997 456899999999999999999999999999999999999999999999997
No 20
>2hue_C Histone H4; mini beta sheet, elongated beta sandwhich, DNA binding prote; 1.70A {Xenopus laevis} SCOP: a.22.1.1 PDB: 3nqj_B 1aoi_B 3kwq_B* 1hio_D 2yfv_B
Probab=99.36 E-value=3.7e-12 Score=78.46 Aligned_cols=72 Identities=18% Similarity=0.231 Sum_probs=64.7
Q ss_pred CcccccCcccchhhhhhhhhcCCcccccCCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHhcc
Q psy15119 16 TRSSRAGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIRND 90 (96)
Q Consensus 16 s~s~ra~l~fpv~ri~r~lk~~~~~~ris~~A~v~laavLEyl~~eIlela~~~a~~~~~k~Itp~~i~~ai~~d 90 (96)
-+.+..| +|.+.|+|+++.. +..|||.++...|+.++|+++.+|+..|..+++|.++++|+++||.+|++..
T Consensus 4 ~r~~~~~--ip~~~I~Riar~~-Gv~rIs~da~~~l~~~l~~~~~~I~~dA~~~a~ha~RKTvt~~DV~~Alk~~ 75 (84)
T 2hue_C 4 LRDNIQG--ITKPAIRRLARRG-GVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQ 75 (84)
T ss_dssp GGGGCCS--SCHHHHHHHHHHT-TCCEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHTTTT
T ss_pred ccccCCC--CCHHHHHHHHHHc-CchhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCcHHHHHHHHHHc
Confidence 3445555 6777899999995 6799999999999999999999999999999999999999999999999854
No 21
>2byk_B Chrac-14; nucleosome sliding, histone fold, DNA-binding protein; 2.4A {Drosophila melanogaster} SCOP: a.22.1.3 PDB: 2bym_B
Probab=99.30 E-value=4e-12 Score=83.92 Aligned_cols=74 Identities=16% Similarity=0.140 Sum_probs=64.6
Q ss_pred Ccccchhhhhhhhhc-CCcccccCCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHhcchhcCC
Q psy15119 22 GLQFPVGRIHRLLRK-GNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIRNDEELNK 95 (96)
Q Consensus 22 ~l~fpv~ri~r~lk~-~~~~~ris~~A~v~laavLEyl~~eIlela~~~a~~~~~k~Itp~~i~~ai~~d~eL~~ 95 (96)
.+.||+++|.|+||+ .....+||.+|...|+.++|.|+.+|...|...|.+.+|++|+++||..|+...+-+++
T Consensus 7 d~~LP~A~I~rImK~~~pd~~~iS~dA~~~l~ka~e~FI~~lt~~A~~~a~~~kRKTI~~~Dv~~Al~~l~f~~f 81 (128)
T 2byk_B 7 DLNLPNAVIGRLIKEALPESASVSKEARAAIARAASVFAIFVTSSSTALAHKQNHKTITAKDILQTLTELDFESF 81 (128)
T ss_dssp ----CCSHHHHHHHHHSCTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHTTCTTT
T ss_pred cccCCHHHHHHHHHHhCcccceECHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHHcCcHHH
Confidence 578999999999996 44578999999999999999999999999999999999999999999999987765554
No 22
>3b0c_W CENP-W, centromere protein W; histone fold, DNA binding, DNA binding protein; HET: CIT; 2.20A {Gallus gallus} PDB: 3b0d_W* 3vh5_W 3vh6_W
Probab=99.27 E-value=1.4e-11 Score=74.43 Aligned_cols=66 Identities=21% Similarity=0.280 Sum_probs=61.0
Q ss_pred cccchhhhhhhhhcCCcccccCCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHh
Q psy15119 23 LQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIR 88 (96)
Q Consensus 23 l~fpv~ri~r~lk~~~~~~ris~~A~v~laavLEyl~~eIlela~~~a~~~~~k~Itp~~i~~ai~ 88 (96)
-.||.+.|.|+||+.-...+||.+|...+..++|.|+.+|...|...|.+.++++|+++||..|++
T Consensus 3 ~~LP~A~V~rI~K~~~p~~~is~~A~~~i~~~~~~Fi~~la~eA~~~a~~~~rKTI~~~dI~~A~~ 68 (76)
T 3b0c_W 3 RTVPRGTLRKIIKKHKPHLRLAANTDLLVHLSFLLFLHRLAEEARTNAFENKSKIIKPEHTIAAAK 68 (76)
T ss_dssp -CCCHHHHHHHHHHHCTTCEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSBCHHHHHHHHH
T ss_pred CcccccHHHHHHHHhCCCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHH
Confidence 368999999999974346899999999999999999999999999999999999999999999986
No 23
>1f1e_A Histone fold protein; archaeal histone protein, DNA binding protein; HET: MSE; 1.37A {Methanopyrus kandleri} SCOP: a.22.1.2
Probab=99.24 E-value=1.8e-11 Score=83.08 Aligned_cols=65 Identities=20% Similarity=0.280 Sum_probs=61.6
Q ss_pred ccchhhhhhhhhcCCcccccCCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHh
Q psy15119 24 QFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIR 88 (96)
Q Consensus 24 ~fpv~ri~r~lk~~~~~~ris~~A~v~laavLEyl~~eIlela~~~a~~~~~k~Itp~~i~~ai~ 88 (96)
-+|.+.|.|+||+.-...|||.+|...|+.++|.|+.+|...|.++|.|.|||||+++||.+|+.
T Consensus 4 ~LP~a~V~Riik~~lg~~rVS~dA~~~l~~~l~~f~~~i~~~A~~~a~ha~RKTv~a~DV~~a~~ 68 (154)
T 1f1e_A 4 ELPKAAIERIFRQGIGERRLSQDAKDTIYDFVPTMAEYVANAAKSVLDASGKKTLMEEHLKALAD 68 (154)
T ss_dssp CCCHHHHHHHHHTTSTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCSEECHHHHHHHHH
T ss_pred cCCccHHHHHHHhcCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHH
Confidence 48999999999997467999999999999999999999999999999999999999999999983
No 24
>1taf_B TFIID TBP associated factor 62; transcription initiation, histone fold, complex (TWO transcr factors); 2.00A {Drosophila melanogaster} SCOP: a.22.1.3
Probab=99.21 E-value=4.7e-11 Score=71.37 Aligned_cols=66 Identities=11% Similarity=0.164 Sum_probs=62.4
Q ss_pred CcccchhhhhhhhhcCCcccccCCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHh
Q psy15119 22 GLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIR 88 (96)
Q Consensus 22 ~l~fpv~ri~r~lk~~~~~~ris~~A~v~laavLEyl~~eIlela~~~a~~~~~k~Itp~~i~~ai~ 88 (96)
.-.||+..|+++.+. .+..+||+++...|+.-+||-+.||++.|.+.++|+||++++++||+.|++
T Consensus 4 ~s~lp~~~v~~iaes-~Gi~~lsddaa~~LA~dvEyr~~eI~qeA~kfmrHakRk~Lt~~DI~~Alk 69 (70)
T 1taf_B 4 GSSISAESMKVIAES-IGVGSLSDDAAKELAEDVSIKLKRIVQDAAKFMNHAKRQKLSVRDIDMSLK 69 (70)
T ss_dssp SCCCCHHHHHHHHHH-TTCCCBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHC
T ss_pred cccCCHHHHHHHHHH-CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCeecHHHHHHHHc
Confidence 357999999999999 677999999999999999999999999999999999999999999999975
No 25
>3b0c_T CENP-T, centromere protein T; histone fold, DNA binding, DNA binding protein; HET: CIT; 2.20A {Gallus gallus} PDB: 3b0d_T* 3vh5_T 3vh6_T
Probab=99.12 E-value=9.8e-11 Score=75.53 Aligned_cols=73 Identities=8% Similarity=0.048 Sum_probs=63.7
Q ss_pred CcccchhhhhhhhhcCCcccccCCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHhcchhcCC
Q psy15119 22 GLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIRNDEELNK 95 (96)
Q Consensus 22 ~l~fpv~ri~r~lk~~~~~~ris~~A~v~laavLEyl~~eIlela~~~a~~~~~k~Itp~~i~~ai~~d~eL~~ 95 (96)
.+.+|.+-|.|+++.. ...|||.++...|..+++.|+.+|...|..+|+|.||++|+++||.+|++.+..+.+
T Consensus 5 d~~lP~a~I~Ri~r~~-g~~rIS~~a~~~l~e~l~~f~~~v~~da~~~A~HA~RKTV~~eDV~lalrr~g~~~~ 77 (111)
T 3b0c_T 5 EPEIASSLIKQIFSHY-VKTPVTRDAYKIVEKCSERYFKQISSDLEAYSQHAGRKTVEMADVELLMRRQGLVTD 77 (111)
T ss_dssp -----CHHHHHHHHHH-HCSCBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHTTSSBT
T ss_pred CCCCCHHHHHHHHHHC-CCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHHHCCCccc
Confidence 3568999999999995 679999999999999999999999999999999999999999999999998776643
No 26
>1taf_A TFIID TBP associated factor 42; transcription initiation, histone fold, complex (TWO transcr factors); 2.00A {Drosophila melanogaster} SCOP: a.22.1.3
Probab=98.98 E-value=1.8e-09 Score=64.08 Aligned_cols=61 Identities=16% Similarity=0.078 Sum_probs=57.4
Q ss_pred hhhhhhhhcCCcccccCCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHhc
Q psy15119 28 GRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIRN 89 (96)
Q Consensus 28 ~ri~r~lk~~~~~~ris~~A~v~laavLEyl~~eIlela~~~a~~~~~k~Itp~~i~~ai~~ 89 (96)
-.|+++|++ .++.+++..++..|..+++-.+.+|++.|..+|.|.|+++|+.+||++||+.
T Consensus 5 ~~i~~iLk~-~G~~~~~~~v~~~L~e~~~ry~~~il~dA~~~a~HAgrktv~~eDVkLAi~~ 65 (68)
T 1taf_A 5 QVIMSILKE-LNVQEYEPRVVNQLLEFTFRYVTSILDDAKVYANHARKKTIDLDDVRLATEV 65 (68)
T ss_dssp HHHHHHHHH-TTCCCBCTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHH
T ss_pred HHHHHHHHH-CCCcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHh
Confidence 358899999 6789999999999999999999999999999999999999999999999974
No 27
>1jfi_B DR1 protein, transcription regulator NC2 beta chain; histone, H2A/H2B, tata-DNA, transcription initiation, NC2, negative cofactor, structural genomics, PSI; 2.62A {Homo sapiens} SCOP: a.22.1.3
Probab=98.91 E-value=2.7e-09 Score=73.83 Aligned_cols=71 Identities=17% Similarity=0.240 Sum_probs=63.5
Q ss_pred ccccCcccchhhhhhhhhcCCcccccCCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHh
Q psy15119 18 SSRAGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIR 88 (96)
Q Consensus 18 s~ra~l~fpv~ri~r~lk~~~~~~ris~~A~v~laavLEyl~~eIlela~~~a~~~~~k~Itp~~i~~ai~ 88 (96)
..-..+.||++.|.|+||+.....+|+.+|...|..+++-|+..|...|...|.+.+|+||+++||..|+.
T Consensus 9 ~~~eD~~LP~A~V~RImK~alp~~rISkDA~~al~ec~~eFI~~LtseA~e~a~~~~RKTI~~eDVl~Al~ 79 (179)
T 1jfi_B 9 GNDDDLTIPRAAINKMIKETLPNVRVANDARELVVNCCTEFIHLISSEANEICNKSEKKTISPEHVIQALE 79 (179)
T ss_dssp ---CCCCCCHHHHHHHHHHHSTTCCBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHH
T ss_pred CchhhhhcCHHHHHHHHHHhCCccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHH
Confidence 33456889999999999995335899999999999999999999999999999999999999999999997
No 28
>2hue_B Histone H3; mini beta sheet, elongated beta sandwhich, DNA binding prote; 1.70A {Xenopus laevis}
Probab=98.72 E-value=3.8e-08 Score=59.66 Aligned_cols=66 Identities=24% Similarity=0.241 Sum_probs=59.5
Q ss_pred cccchhhhhhhhhcC----CcccccCCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHh
Q psy15119 23 LQFPVGRIHRLLRKG----NYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIR 88 (96)
Q Consensus 23 l~fpv~ri~r~lk~~----~~~~ris~~A~v~laavLEyl~~eIlela~~~a~~~~~k~Itp~~i~~ai~ 88 (96)
|-+|..+|.|++++- ....|++++|...|.-+.|.++-++.+.+...|.|.++.||.|+||++|.+
T Consensus 2 lli~k~PF~RLVRei~~~~~~~~R~q~~Al~aLQea~Eaylv~lfeda~l~A~HAkRvTi~~kDiqLa~r 71 (77)
T 2hue_B 2 ALIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVALFEDTNLCAIHAKRVTIMPKDIQLARR 71 (77)
T ss_dssp CCSCHHHHHHHHHHHHHTTCSSCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHH
T ss_pred CccccchHHHHHHHHHHHcCccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCcHhhHHHHHH
Confidence 567888888888873 145899999999999999999999999999999999999999999999975
No 29
>2ly8_A Budding yeast chaperone SCM3; centromere protein, CENH3 variants, partially unfolded; NMR {Saccharomyces cerevisiae}
Probab=98.66 E-value=9e-08 Score=62.47 Aligned_cols=52 Identities=12% Similarity=0.128 Sum_probs=49.7
Q ss_pred CcccccCCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHhc
Q psy15119 38 NYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIRN 89 (96)
Q Consensus 38 ~~~~ris~~A~v~laavLEyl~~eIlela~~~a~~~~~k~Itp~~i~~ai~~ 89 (96)
.++.|||.++...+..+||.++.+|+..|..+++|.++|||+++||.+|++.
T Consensus 60 gGvkRIS~~iy~e~r~vl~~~l~~i~rdav~yaehA~RKTVta~DV~~Alkr 111 (121)
T 2ly8_A 60 RGSKRISGLIYEEVRAVLKSFLESVIRDSVTYTEHAKRKTVTSLDVVYALKR 111 (121)
T ss_dssp CCSSCCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCBCHHHHHHHHHH
T ss_pred cCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCcHHHHHHHHHh
Confidence 5679999999999999999999999999999999999999999999999873
No 30
>2l5a_A Histone H3-like centromeric protein CSE4, protein histone H4; A single chain of CSE4+SCM3+H4, fusion protein; NMR {Saccharomyces cerevisiae}
Probab=98.64 E-value=4.6e-08 Score=70.00 Aligned_cols=59 Identities=12% Similarity=0.061 Sum_probs=55.2
Q ss_pred hhhhhhcCCcccccCCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHhc
Q psy15119 30 IHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIRN 89 (96)
Q Consensus 30 i~r~lk~~~~~~ris~~A~v~laavLEyl~~eIlela~~~a~~~~~k~Itp~~i~~ai~~ 89 (96)
+.|+.+. .++.|||.++...+..+||.++.+|+..|..+++|.++|+|+++||.+|++.
T Consensus 167 ~~RlaRr-gGVkRIS~~iyeelr~vLe~fle~IirdAv~yaeHA~RKTVta~DV~~ALKr 225 (235)
T 2l5a_A 167 DEEDGDK-GGVKRISGLIYEEVRAVLKSFLESVIRDSVTYTEHAKRKTVTSLDVVYALKR 225 (235)
T ss_dssp CCTTSCC-TTCCTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHH
T ss_pred HHHHhhc-CCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCcHHHHHHHHHh
Confidence 5688888 5789999999999999999999999999999999999999999999999873
No 31
>3nqj_A Histone H3-like centromeric protein A; alpha helix, histone fold, centromere, DNA binding protein; 2.10A {Homo sapiens}
Probab=98.63 E-value=8.4e-08 Score=58.76 Aligned_cols=66 Identities=23% Similarity=0.138 Sum_probs=59.2
Q ss_pred cccchhhhhhhhhcCC------cccccCCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHh
Q psy15119 23 LQFPVGRIHRLLRKGN------YAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIR 88 (96)
Q Consensus 23 l~fpv~ri~r~lk~~~------~~~ris~~A~v~laavLEyl~~eIlela~~~a~~~~~k~Itp~~i~~ai~ 88 (96)
|-+|..+|.|+.++-. ...|++++|...|.-+.|.++-++.|.+...|.|.++.||.|+||++|.+
T Consensus 2 lLI~klPF~RLVREI~~~~~~~~~~R~q~~Al~aLQea~E~ylv~Lfeda~lcAiHAkRvTi~~kDiqLa~r 73 (82)
T 3nqj_A 2 LLIRKLPFSRLAREICVKFTRGVDFNWQAQALLALQEAAEAFLVHLFEDAYLLTLHAGRVTLFPKDVQLARR 73 (82)
T ss_dssp CSSCHHHHHHHHHHHHHHHHSSCCCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHH
T ss_pred CCcccccHHHHHHHHHHHhccCccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCcHHHHHHHHH
Confidence 4578888888888743 35799999999999999999999999999999999999999999999875
No 32
>4dra_A Centromere protein S; DNA binding complex, DNA damage repair, histone-fold, DNA BI protein; 2.41A {Homo sapiens} PDB: 4drb_A
Probab=98.57 E-value=6.9e-08 Score=62.32 Aligned_cols=71 Identities=15% Similarity=0.184 Sum_probs=59.6
Q ss_pred ccCcccchhhhhhhhhcCCcccc---cCCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHhcchhcC
Q psy15119 20 RAGLQFPVGRIHRLLRKGNYAER---VGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIRNDEELN 94 (96)
Q Consensus 20 ra~l~fpv~ri~r~lk~~~~~~r---is~~A~v~laavLEyl~~eIlela~~~a~~~~~k~Itp~~i~~ai~~d~eL~ 94 (96)
++.|.+.|++|- ++ ....| ||.++...|+.+++.++.+|.+.+...|+|.||++|+++||.++++.++.|.
T Consensus 26 Kaal~y~V~rIv---ke-~gaer~~~vS~~ai~aL~El~~~~~~~ia~Dl~~fAkHAgRkTI~~eDV~La~Rr~~~L~ 99 (113)
T 4dra_A 26 KAAVHYTVGCLC---EE-VALDKEMQFSKQTIAAISELTFRQCENFAKDLEMFARHAKRTTINTEDVKLLARRSNSLL 99 (113)
T ss_dssp HHHHHHHHHHHH---HH-HHHHHTCCBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHTTTCHHHH
T ss_pred HHHHHHHHHHHH---HH-HHHHcCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCHHHHHHHHHhCHHHH
Confidence 345667766554 44 33344 9999999999999999999999999999999999999999999999988763
No 33
>3b0b_B CENP-S, centromere protein S; histone fold, DNA binding, DNA, nucleus, DNA binding protein; 2.15A {Gallus gallus}
Probab=98.51 E-value=1.6e-07 Score=60.16 Aligned_cols=73 Identities=14% Similarity=0.176 Sum_probs=59.2
Q ss_pred ccCcccchhhhhhhhhcCCcccccCCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHhcchhc
Q psy15119 20 RAGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIRNDEEL 93 (96)
Q Consensus 20 ra~l~fpv~ri~r~lk~~~~~~ris~~A~v~laavLEyl~~eIlela~~~a~~~~~k~Itp~~i~~ai~~d~eL 93 (96)
++.+.+-|++|-+-.-. ....+++.++...|+.+++.++.+|...+..+|+|.||++|+++||.++++.++.|
T Consensus 18 Kaal~~~V~rI~~~~g~-~~~~~vs~~~i~aL~E~~~~~~~~ia~Da~~fA~HAgRkTI~~eDV~La~Rrn~~l 90 (107)
T 3b0b_B 18 RAAVHYTTGCLCQDVAE-DKGVLFSKQTVAAISEITFRQCENFARDLEMFARHAKRSTITSEDVKLLARRSNSL 90 (107)
T ss_dssp HHHHHHHHHHHHHHHHH-HHTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHTTTCHHH
T ss_pred HHHHHHHHHHHHHHHhh-hcCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCcCCHHHHHHHHHhCHHH
Confidence 34455666555432211 12369999999999999999999999999999999999999999999999998865
No 34
>2yfv_A Histone H3-like centromeric protein CSE4; cell cycle, kinetochore, centromere, histone chaperone, BUDD; 2.32A {Kluyveromyces lactis nrrl y-1140} PDB: 2yfw_A
Probab=98.50 E-value=2.6e-07 Score=58.48 Aligned_cols=68 Identities=24% Similarity=0.184 Sum_probs=58.1
Q ss_pred cCcccchhhhhhhhhcCC-------cccccCCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHh
Q psy15119 21 AGLQFPVGRIHRLLRKGN-------YAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIR 88 (96)
Q Consensus 21 a~l~fpv~ri~r~lk~~~-------~~~ris~~A~v~laavLEyl~~eIlela~~~a~~~~~k~Itp~~i~~ai~ 88 (96)
.+|.+|..+|.|+.++-. ...|++++|...|.-+.|.++-++.|.+...|.|.++.||.|+||++|.+
T Consensus 24 t~llIpk~PF~RLVREI~~~~~~~~~~~R~q~~Al~ALQeaaEayLv~Lfeda~l~A~HAkRvTi~~kDiqLa~r 98 (100)
T 2yfv_A 24 TDLLISRMPFARLVKEVTDQFTTESEPLRWQSMAIMALQEASEAYLVGLLEHTNLLALHAKRITIMRKDMQLARR 98 (100)
T ss_dssp ----CCHHHHHHHHHHHHHTTC-----CEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHH
T ss_pred chhhhccccHHHHHHHHHHHhccccchhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCCHHHHHHHHH
Confidence 468899999999998843 15799999999999999999999999999999999999999999999864
No 35
>3v9r_A MHF1, uncharacterized protein YOL086W-A; histone fold, fanconi anemia, DNA repair, DNA BI protein; 2.40A {Saccharomyces cerevisiae}
Probab=98.47 E-value=2.2e-07 Score=57.83 Aligned_cols=74 Identities=15% Similarity=0.036 Sum_probs=59.9
Q ss_pred ccCcccchhhhhhhhhcCCcccccCCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHhcchhcC
Q psy15119 20 RAGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIRNDEELN 94 (96)
Q Consensus 20 ra~l~fpv~ri~r~lk~~~~~~ris~~A~v~laavLEyl~~eIlela~~~a~~~~~k~Itp~~i~~ai~~d~eL~ 94 (96)
++.+.+-|++|-.-.-+ .....||..+...|+.+++..+.+|.+-+..+|+|.||++|+++||.++++.++.|.
T Consensus 11 Kaal~~~V~ki~~e~~~-~~g~~vs~~~i~aL~e~~~~~~~~ia~Dl~~fA~HAgRkTI~~eDV~L~~Rrn~~L~ 84 (90)
T 3v9r_A 11 KARLWIRVEERLQQVLS-SEDIKYTPRFINSLLELAYLQLGEMGSDLQAFARHAGRGVVNKSDLMLYLRKQPDLQ 84 (90)
T ss_dssp HHHHHHHHHHHHHHHSC-SSCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHTTTCHHHH
T ss_pred HHHHHHHHHHHHHHHHH-hcCceeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHhChHHH
Confidence 34466667666533311 122569999999999999999999999999999999999999999999999998874
No 36
>1tzy_C Histone H3; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1eqz_C 1hq3_C 2aro_C 2f8n_A 2hio_C 3av1_A 3lel_A 3afa_A 3azi_A 3azj_A 3azk_A 3azl_A 3azm_A 3azn_A 2cv5_A* 1u35_A* 2nqb_A 2io5_B 2pyo_A* 3c9k_C ...
Probab=98.45 E-value=5.3e-07 Score=59.89 Aligned_cols=68 Identities=25% Similarity=0.249 Sum_probs=61.6
Q ss_pred cCcccchhhhhhhhhcCC----cccccCCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHh
Q psy15119 21 AGLQFPVGRIHRLLRKGN----YAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIR 88 (96)
Q Consensus 21 a~l~fpv~ri~r~lk~~~----~~~ris~~A~v~laavLEyl~~eIlela~~~a~~~~~k~Itp~~i~~ai~ 88 (96)
.+|.+|...|.|++++-. ...|++++|...|.-+.|.++-+++|.+...|.|.++.+|.|+||++|..
T Consensus 59 t~lLIpk~PF~RLVREI~~~~~~~~R~q~~Al~aLQeaaEayLv~Lfeda~l~A~HAkRvTi~~kDiqLa~r 130 (136)
T 1tzy_C 59 TELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARR 130 (136)
T ss_dssp CSCCSCHHHHHHHHHHHHHHHCTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHH
T ss_pred hhhhhccchHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCcHHhHHHHHH
Confidence 357899999999998841 35899999999999999999999999999999999999999999999975
No 37
>3nqu_A Histone H3-like centromeric protein A; alpha helix, histone fold, centromere, DNA binding protein; 2.50A {Homo sapiens} PDB: 3an2_A
Probab=98.45 E-value=4.1e-07 Score=60.63 Aligned_cols=68 Identities=22% Similarity=0.131 Sum_probs=61.6
Q ss_pred cCcccchhhhhhhhhcCC------cccccCCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHh
Q psy15119 21 AGLQFPVGRIHRLLRKGN------YAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIR 88 (96)
Q Consensus 21 a~l~fpv~ri~r~lk~~~------~~~ris~~A~v~laavLEyl~~eIlela~~~a~~~~~k~Itp~~i~~ai~ 88 (96)
.+|.+|...|.|++++-. ...|++++|...|.-+.|.++-+++|.+...|.|.++.||.|+||++|..
T Consensus 58 t~LLIpKlPF~RLVREI~~~~~~~~~~Rfq~~Al~ALQEAaEayLv~LFEdanlcAiHAkRVTIm~kDiqLArr 131 (140)
T 3nqu_A 58 THLLIRKLPFSRLAREICVKFTRGVDFNWQAQALLALQEAAEAFLVHLFEDAYLLTLHAGRVTLFPKDVQLARR 131 (140)
T ss_dssp -CCCSCTTHHHHHHHHHHHHHHTTCCCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHH
T ss_pred cccccccccHHHHHHHHHHHhcccccceecHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccHHHHHHHHH
Confidence 468899999999998843 25799999999999999999999999999999999999999999999875
No 38
>3r45_A Histone H3-like centromeric protein A; histone fold, centromere, CENP-A, histone chaperone, hjurp; 2.60A {Homo sapiens}
Probab=98.42 E-value=3.5e-07 Score=61.84 Aligned_cols=68 Identities=22% Similarity=0.131 Sum_probs=61.4
Q ss_pred cCcccchhhhhhhhhcCC------cccccCCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHh
Q psy15119 21 AGLQFPVGRIHRLLRKGN------YAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIR 88 (96)
Q Consensus 21 a~l~fpv~ri~r~lk~~~------~~~ris~~A~v~laavLEyl~~eIlela~~~a~~~~~k~Itp~~i~~ai~ 88 (96)
.+|.+|...|.|++++-. ...|++.+|...|.-+.|.++-+++|.+...|.|.++.||.|+||++|..
T Consensus 74 teLLIpKlPF~RLVREIa~~~~~~~~lRfqs~Al~ALQEAaEayLV~LFEdanLcAiHAkRVTIm~kDIqLArr 147 (156)
T 3r45_A 74 THLLIRKLPFSRLAREICVKFTRGVDFNWQAQALLALQEAAEAFLVHLFEDAYLLTLHAGRVTLFPKDVQLARR 147 (156)
T ss_dssp -CCCSCHHHHHHHHHHHHHTTTTTCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSEECHHHHHHHHH
T ss_pred cccccccccHHHHHHHHHHHhccCccceecHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccHHHHHHHHH
Confidence 468899999999998743 25799999999999999999999999999999999999999999999875
No 39
>3vh5_A CENP-S; histone fold, chromosome segregation, DNA binding, nucleus, binding protein; 2.40A {Gallus gallus} PDB: 3vh6_A
Probab=98.28 E-value=7.2e-07 Score=59.41 Aligned_cols=74 Identities=15% Similarity=0.178 Sum_probs=60.6
Q ss_pred ccCcccchhhhhhhhhcCCcccccCCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHhcchhcC
Q psy15119 20 RAGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIRNDEELN 94 (96)
Q Consensus 20 ra~l~fpv~ri~r~lk~~~~~~ris~~A~v~laavLEyl~~eIlela~~~a~~~~~k~Itp~~i~~ai~~d~eL~ 94 (96)
++-|.+-|++|-.-.-. .....||.++...|+.+++.++.+|...+..+|+|.||++|+++||.++++.++.|.
T Consensus 18 KaAl~y~VgkIvee~~~-~~~~~vS~~ai~aL~El~~~~~e~ia~DLe~FAkHAGRKTI~~eDVkLa~Rrn~~L~ 91 (140)
T 3vh5_A 18 RAAVHYTTGALAQDVAE-DKGVLFSKQTVAAISEITFRQAENFARDLEMFARHAKRSTITSEDVKLLARRSNSLL 91 (140)
T ss_dssp HHHHHHHHHHHHHHHHH-HHTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHTTSHHHH
T ss_pred HHHHHHHHHHHHHHHHH-hcCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHhCHHHH
Confidence 44566777666543211 123569999999999999999999999999999999999999999999999988763
No 40
>2nqb_D Histone H2B; nucleosome, NCP, chromatin, structural protein/DNA complex; 2.30A {Drosophila melanogaster} PDB: 2pyo_D*
Probab=98.27 E-value=1.9e-06 Score=56.19 Aligned_cols=64 Identities=19% Similarity=0.241 Sum_probs=57.1
Q ss_pred ccchhhhhhhhhcCCcccccCCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHh
Q psy15119 24 QFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIR 88 (96)
Q Consensus 24 ~fpv~ri~r~lk~~~~~~ris~~A~v~laavLEyl~~eIlela~~~a~~~~~k~Itp~~i~~ai~ 88 (96)
.|. ..|+|+|++-.-...||+.|...|..+++.+.+.|...|...++.+++++|++++|+.|++
T Consensus 34 sy~-~YIyKVLKQVhpd~gISskAm~ImnSfvnDiferIA~EAs~La~~nkr~TitsreIqtAvr 97 (123)
T 2nqb_D 34 SYA-IYIYTVLKQVHPDTGISSKAMSIMNSFVNDIFERIAAEASRLAHYNKRSTITSREIQTAVR 97 (123)
T ss_dssp CSH-HHHHHHHHHHCTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEECHHHHHHHHH
T ss_pred hHH-HHHHHHHHHhCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCHHHHHHHHH
Confidence 344 4689999994444689999999999999999999999999999999999999999999985
No 41
>1tzy_B Histone H2B; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1eqz_B 1hq3_B 2aro_B 2hio_B 3c9k_B 3azg_D 3a6n_D 3an2_D 3av1_D 3av2_D 3ayw_D 3aze_D 3azf_D 3afa_D 3azh_D 3azi_D 3azj_D 3azk_D 3azl_D 3azm_D ...
Probab=98.22 E-value=2.8e-06 Score=55.63 Aligned_cols=65 Identities=17% Similarity=0.257 Sum_probs=58.2
Q ss_pred cccchhhhhhhhhcCCcccccCCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHh
Q psy15119 23 LQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIR 88 (96)
Q Consensus 23 l~fpv~ri~r~lk~~~~~~ris~~A~v~laavLEyl~~eIlela~~~a~~~~~k~Itp~~i~~ai~ 88 (96)
-.|.+ .|+|+|++-.-...||+.|...|..+++.+...|...|...++.+++++|++++|+.|++
T Consensus 36 esy~~-YIyKVLKQVhpd~gISskAm~ImnSfvnDiferIA~EAs~La~~nkr~TitsreIqtAvr 100 (126)
T 1tzy_B 36 ESYSI-YVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVR 100 (126)
T ss_dssp CCCHH-HHHHHHHHHCTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHH
T ss_pred ccHHH-HHHHHHHHhCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHH
Confidence 45655 799999994444589999999999999999999999999999999999999999999985
No 42
>2jss_A Chimera of histone H2B.1 and histone H2A.Z; histone/chaperone complex, intrinsically unfolded protein, chaperone/structural protein complex; NMR {Saccharomyces cerevisiae} SCOP: a.22.1.1 a.22.1.1
Probab=97.88 E-value=2.9e-05 Score=53.91 Aligned_cols=60 Identities=22% Similarity=0.262 Sum_probs=55.3
Q ss_pred hhhhhhhcCCcccccCCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHh
Q psy15119 29 RIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIR 88 (96)
Q Consensus 29 ri~r~lk~~~~~~ris~~A~v~laavLEyl~~eIlela~~~a~~~~~k~Itp~~i~~ai~ 88 (96)
.|+|+|++-.....||..|..+|...+..++..|...|...+..+++++||++||+.|++
T Consensus 8 yi~kvLkqv~p~~~iS~~Am~~m~s~v~di~~rIa~eA~~L~~~~~r~Tit~~eIq~Avr 67 (192)
T 2jss_A 8 YIYKVLKQTHPDTGISQKSMSILNSFVNDIFERIATEASKLAAYNKKSTISAREIQTAVR 67 (192)
T ss_dssp HHHHHHHHHCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCSCCHHHHHHHHH
T ss_pred HHHHHHcccCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHH
Confidence 589999985545789999999999999999999999999999999999999999999986
No 43
>1bh9_B TAFII28; histone fold, tata binding protein, transcription regulation complex; HET: PMB; 2.60A {Homo sapiens} SCOP: a.22.1.3 PDB: 1bh8_B*
Probab=97.56 E-value=0.00024 Score=43.87 Aligned_cols=64 Identities=22% Similarity=0.372 Sum_probs=54.7
Q ss_pred ccchhhhhhhhhcCCcccccCCChHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCcccHHHHHHHHh
Q psy15119 24 QFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNK-KTRIIPRHLQLAIR 88 (96)
Q Consensus 24 ~fpv~ri~r~lk~~~~~~ris~~A~v~laavLEyl~~eIlela~~~a~~~~-~k~Itp~~i~~ai~ 88 (96)
.||=..|+|++.. .....|+.+..+.++++--.|+.||+|.|.......+ ..-|.|.||..|..
T Consensus 16 ~f~k~~vKrl~~~-~~~~~v~~~v~i~v~glaKvfVgelVE~A~~V~~~~~~~~Pl~P~HireA~r 80 (89)
T 1bh9_B 16 AFPKAAIKRLIQS-ITGTSVSQNVVIAMSGISKVFVGEVVEEALDVCEKWGEMPPLQPKHMREAVR 80 (89)
T ss_dssp CCCHHHHHHHHHH-HHSSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSSCCHHHHHHHHH
T ss_pred cCCHHHHHHHHHH-HcCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHH
Confidence 4666669999987 5578999999999999999999999999988876554 45799999999975
No 44
>4dra_E Centromere protein X; DNA binding complex, DNA damage repair, histone-fold, DNA BI protein; 2.41A {Homo sapiens} PDB: 4drb_J
Probab=97.42 E-value=0.00086 Score=40.96 Aligned_cols=68 Identities=18% Similarity=0.182 Sum_probs=57.9
Q ss_pred ccCcccchhhhhhhhhcCC--cccccCCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHH
Q psy15119 20 RAGLQFPVGRIHRLLRKGN--YAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAI 87 (96)
Q Consensus 20 ra~l~fpv~ri~r~lk~~~--~~~ris~~A~v~laavLEyl~~eIlela~~~a~~~~~k~Itp~~i~~ai 87 (96)
.++..||..-|.|+|+..- ..-||+.+|...++..|+.|+.|.+-.|...|...+...|..+|++...
T Consensus 8 ~~~~~i~~~li~ril~~~F~~~kTkIs~dAl~l~aeyl~iFV~EAv~RA~~~a~~e~~~~le~e~LEki~ 77 (84)
T 4dra_E 8 GAGSGFRKELVSRLLHLHFKDDKTKVSGDALQLMVELLKVFVVEAAVRGVRQAQAEDALRVDVDQLEKVL 77 (84)
T ss_dssp ---CCCCHHHHHHHHHTTCSSTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHhcCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHH
Confidence 3567899999999999632 3579999999999999999999999999999988888899999998643
No 45
>3b0b_C CENP-X, centromere protein X; histone fold, DNA binding, DNA, nucleus, DNA binding protein; 2.15A {Gallus gallus} PDB: 3vh5_D 3vh6_D
Probab=97.39 E-value=0.00089 Score=40.61 Aligned_cols=65 Identities=20% Similarity=0.220 Sum_probs=57.4
Q ss_pred CcccchhhhhhhhhcCC--cccccCCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccHHHHHHH
Q psy15119 22 GLQFPVGRIHRLLRKGN--YAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLA 86 (96)
Q Consensus 22 ~l~fpv~ri~r~lk~~~--~~~ris~~A~v~laavLEyl~~eIlela~~~a~~~~~k~Itp~~i~~a 86 (96)
+..||..-|.|+|+..- ..-||+.+|...++..|+.|+.|.+..|...|+..+...|..+|++..
T Consensus 6 ~~~~~~~lI~ril~~~f~~~ktrI~~dAl~l~aeyl~iFV~EAv~RA~~~a~~e~~~~le~~~LEki 72 (81)
T 3b0b_C 6 EGGFRKETVERLLRLHFRDGRTRVNGDALLLMAELLKVFVREAAARAARQAQAEDLEKVDIEHVEKV 72 (81)
T ss_dssp -CCCCHHHHHHHHHHHCCSTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHhccCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeecHHHHHHH
Confidence 46799999999998732 357999999999999999999999999999998888899999999864
No 46
>1h3o_B Transcription initiation factor TFIID 20/15 kDa subunits; transcription/TBP-associated factors, TBP-associated factors; 2.3A {Homo sapiens} SCOP: a.22.1.3
Probab=96.84 E-value=0.0046 Score=37.01 Aligned_cols=68 Identities=16% Similarity=0.236 Sum_probs=59.9
Q ss_pred ccchhhhhhhhhcCCcccccCCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHhcch
Q psy15119 24 QFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIRNDE 91 (96)
Q Consensus 24 ~fpv~ri~r~lk~~~~~~ris~~A~v~laavLEyl~~eIlela~~~a~~~~~k~Itp~~i~~ai~~d~ 91 (96)
.++-.++..++++-.....+..++-..|..+.+-|+..++..|...|+|.+..++.+.||++.+..+.
T Consensus 5 vl~k~~L~~Lv~~idp~~~ld~~vee~ll~lADdFV~~V~~~ac~lAKhR~s~~le~kDvql~Ler~w 72 (76)
T 1h3o_B 5 VLTKKKLQDLVREVDPNEQLDEDVEEMLLQIADDFIESVVTAACQLARHRKSSTLEVKDVQLHLERQW 72 (76)
T ss_dssp SSCHHHHHHHHHHHCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEECHHHHHHHHHHHT
T ss_pred cccHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHhhc
Confidence 45667788888885556889999999999999999999999999999999999999999999887653
No 47
>2l5a_A Histone H3-like centromeric protein CSE4, protein histone H4; A single chain of CSE4+SCM3+H4, fusion protein; NMR {Saccharomyces cerevisiae}
Probab=95.91 E-value=0.0098 Score=42.47 Aligned_cols=67 Identities=24% Similarity=0.177 Sum_probs=55.2
Q ss_pred CcccchhhhhhhhhcCC----c---ccccCCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHh
Q psy15119 22 GLQFPVGRIHRLLRKGN----Y---AERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIR 88 (96)
Q Consensus 22 ~l~fpv~ri~r~lk~~~----~---~~ris~~A~v~laavLEyl~~eIlela~~~a~~~~~k~Itp~~i~~ai~ 88 (96)
.|.+|-.+|.|+.++-. . ..|..++|...|--+-|.++-.++|.+.-.|.|.++-||.|.|+++|-.
T Consensus 9 ~~lI~KlPFqRLVREIaq~~~~~~~~lRfqs~Al~ALQEAaEayLV~LFEd~nLcaiHAkRVTim~kDiqLarr 82 (235)
T 2l5a_A 9 KLLISKIPFARLVKEVTDEFTTKDQDLRWQSMAIMALQEASEAYLVGLLEHTNLLALHAKRITIMKKDMQLARR 82 (235)
T ss_dssp --CCSCCHHHHHHHHHHHTSCGGGTTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTTSGGGTTHHHHHHT
T ss_pred cccccCccHHHHHHHHHHHhccCCccceecHHHHHHHHHHHHHHHHHHHhhhHHHHhcccccccchhhHHHHHH
Confidence 46677777777766521 1 3689999999999999999999999999999999999999999999965
No 48
>1wwi_A Hypothetical protein TTHA1479; structural genomics, unknown function, riken structural genomics/proteomics initiative, RSGI; 1.58A {Thermus thermophilus HB8} SCOP: a.22.1.4 PDB: 1wws_A
Probab=92.75 E-value=0.24 Score=32.97 Aligned_cols=59 Identities=19% Similarity=0.220 Sum_probs=51.5
Q ss_pred ccchhhhhhhhhcCCcccccCCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccHHHH
Q psy15119 24 QFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHL 83 (96)
Q Consensus 24 ~fpv~ri~r~lk~~~~~~ris~~A~v~laavLEyl~~eIlela~~~a~~~~~k~Itp~~i 83 (96)
.+++.+++|+++. ...-=|..+-.--+..+++-=+.+++..|...|+.+|+..|.|.|+
T Consensus 2 vm~~~~~e~lFR~-aa~LdvdK~d~~r~~d~V~~Kl~DLl~va~~~Ak~n~RdvI~~~DL 60 (148)
T 1wwi_A 2 LMKVAEFERLFRQ-AAGLDVDKNDLKRVSDFLRNKLYDLLAVAERNAKYNGRDLIFEPDL 60 (148)
T ss_dssp CSCHHHHHHHHHH-HHCCCCCGGGHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECGGGS
T ss_pred cCCHHHHHHHHHH-HhccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeeccccC
Confidence 4688999999999 4446677777888889999999999999999999999999999885
No 49
>1r4v_A Hypothetical protein AQ_328; structural genomics, all-alpha, histon fold, PSI, protein ST initiative, midwest center for structural genomics; HET: MSE; 1.90A {Aquifex aeolicus} SCOP: a.22.1.4
Probab=92.06 E-value=0.09 Score=35.77 Aligned_cols=59 Identities=14% Similarity=0.054 Sum_probs=51.7
Q ss_pred ccchhhhhhhhhcCCcccccCCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccHHHH
Q psy15119 24 QFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHL 83 (96)
Q Consensus 24 ~fpv~ri~r~lk~~~~~~ris~~A~v~laavLEyl~~eIlela~~~a~~~~~k~Itp~~i 83 (96)
.+|+.+++|+++. ...-=|..+-.--+..+++-=+.+++..|...|+.+||..|.|.|+
T Consensus 26 vmg~~kferlFR~-aagLDvdK~d~kr~~d~V~~Kl~DLl~va~~~Ak~NgRDvI~~~DL 84 (171)
T 1r4v_A 26 PKGFDKLDHYFRT-ELDIDLTDETIELLLNSVKAAFGKLFYGAEQRARWNGRDFIALADL 84 (171)
T ss_dssp CTTHHHHHHHHHH-HHCCCCCHHHHHHHHHHHHHHHHHTTTTHHHHHHHTTCSEECGGGS
T ss_pred cCChHHHHHHHHH-HhccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeeccccC
Confidence 8899999999999 4446677777778888999999999999999999999999999886
No 50
>1khy_A CLPB protein; alpha helix, chaperone; 1.95A {Escherichia coli} SCOP: a.174.1.1
Probab=90.80 E-value=0.42 Score=30.18 Aligned_cols=33 Identities=30% Similarity=0.208 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHhcCCCcccHHHHHHHHhcch
Q psy15119 59 AAEVLELAGNAARDNKKTRIIPRHLQLAIRNDE 91 (96)
Q Consensus 59 ~~eIlela~~~a~~~~~k~Itp~~i~~ai~~d~ 91 (96)
+.++++.|...|...+...|+|+||-+++-.++
T Consensus 10 ~~~~l~~A~~~A~~~~~~~i~~eHlLlaLl~~~ 42 (148)
T 1khy_A 10 FQLALADAQSLALGHDNQFIEPLHLMSALLNQE 42 (148)
T ss_dssp HHHHHHHHHHHHHHTTCSSBCHHHHHHHHHTCT
T ss_pred HHHHHHHHHHHHHHcCCCccCHHHHHHHHHcCC
Confidence 456889999999999999999999999997665
No 51
>3fes_A ATP-dependent CLP endopeptidase; alpha-helical bundles, structural genomics, PSI-2, protein S initiative; HET: PG4 EPE; 1.82A {Clostridium difficile}
Probab=90.61 E-value=0.3 Score=31.25 Aligned_cols=33 Identities=21% Similarity=0.310 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHhcCCCcccHHHHHHHHhcch
Q psy15119 59 AAEVLELAGNAARDNKKTRIIPRHLQLAIRNDE 91 (96)
Q Consensus 59 ~~eIlela~~~a~~~~~k~Itp~~i~~ai~~d~ 91 (96)
+.++++.|.+.|...+...|+|+||-+++-.++
T Consensus 12 a~~~l~~A~~~A~~~~~~~i~~eHLLlaLl~~~ 44 (145)
T 3fes_A 12 AKKAIDLAFESAKSLGHNIVGSEHILLGLLREE 44 (145)
T ss_dssp HHHHHHHHHHHHHHTTCSEECHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHcCCCCccHHHHHHHHHhCC
Confidence 457889999999999999999999999997654
No 52
>3fh2_A Probable ATP-dependent protease (heat shock prote; struct genomics, PSI2, MCSG, protein structure initiative; 1.60A {Corynebacterium glutamicum}
Probab=90.22 E-value=0.36 Score=30.84 Aligned_cols=32 Identities=28% Similarity=0.314 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHhcCCCcccHHHHHHHHhcc
Q psy15119 59 AAEVLELAGNAARDNKKTRIIPRHLQLAIRND 90 (96)
Q Consensus 59 ~~eIlela~~~a~~~~~k~Itp~~i~~ai~~d 90 (96)
+.++++.|...|...+...|+|+||-+|+-.+
T Consensus 11 ~~~~l~~A~~~A~~~~~~~i~~eHLLlaLl~~ 42 (146)
T 3fh2_A 11 ARRVIVLAQEEARMLNHNYIGTEHILLGLIHE 42 (146)
T ss_dssp HHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCCchHHHHHHHHHhC
Confidence 45688999999999999999999999998765
No 53
>2y1q_A CLPC N-domain, negative regulator of genetic competence CLPC/MEC; transcription, proteolysis; 1.50A {Bacillus subtilis} PDB: 2y1r_A* 2k77_A
Probab=88.99 E-value=0.48 Score=30.04 Aligned_cols=33 Identities=27% Similarity=0.294 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHhcCCCcccHHHHHHHHhcch
Q psy15119 59 AAEVLELAGNAARDNKKTRIIPRHLQLAIRNDE 91 (96)
Q Consensus 59 ~~eIlela~~~a~~~~~k~Itp~~i~~ai~~d~ 91 (96)
+.++++.|.+.|...+...|+|+||-+++-.++
T Consensus 10 ~~~al~~A~~~A~~~~h~~i~~eHlLlaLl~~~ 42 (150)
T 2y1q_A 10 AQKVLALAQEEALRLGHNNIGTEHILLGLVREG 42 (150)
T ss_dssp HHHHHHHHHHHHHHTTCSEECHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHcCCCCccHHHHHHHHHhCC
Confidence 456888999999999999999999999987654
No 54
>3fes_A ATP-dependent CLP endopeptidase; alpha-helical bundles, structural genomics, PSI-2, protein S initiative; HET: PG4 EPE; 1.82A {Clostridium difficile}
Probab=88.38 E-value=0.59 Score=29.81 Aligned_cols=33 Identities=33% Similarity=0.408 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHHhcCCCcccHHHHHHHHhcch
Q psy15119 59 AAEVLELAGNAARDNKKTRIIPRHLQLAIRNDE 91 (96)
Q Consensus 59 ~~eIlela~~~a~~~~~k~Itp~~i~~ai~~d~ 91 (96)
+..+++.|..+|...+...|+++||-+|+-.|+
T Consensus 86 ~~~vl~~A~~~A~~~~~~~v~~eHlLlAll~~~ 118 (145)
T 3fes_A 86 SKQILELSGMFANKLKTNYIGTEHILLAIIQEG 118 (145)
T ss_dssp HHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHcCCCcccHHHHHHHHHhCC
Confidence 456788899999999999999999999997654
No 55
>3fh2_A Probable ATP-dependent protease (heat shock prote; struct genomics, PSI2, MCSG, protein structure initiative; 1.60A {Corynebacterium glutamicum}
Probab=87.93 E-value=0.66 Score=29.55 Aligned_cols=32 Identities=22% Similarity=0.179 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHhcCCCcccHHHHHHHHhcch
Q psy15119 60 AEVLELAGNAARDNKKTRIIPRHLQLAIRNDE 91 (96)
Q Consensus 60 ~eIlela~~~a~~~~~k~Itp~~i~~ai~~d~ 91 (96)
..+++.|..+|...+...|+++||-+|+-.|+
T Consensus 87 ~~vL~~A~~~a~~~~~~~i~~eHlLlall~~~ 118 (146)
T 3fh2_A 87 KKVLELSLREGLQMGHKYIGTEFLLLGLIREG 118 (146)
T ss_dssp HHHHHHHHHHHHHTTCSSBCHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHcCCCcCcHHHHHHHHHhCC
Confidence 56788899999999999999999999997654
No 56
>1k6k_A ATP-dependent CLP protease ATP-binding subunit CLPA; chaperone, ATPase, adaptor binding, X-RAY, structure, N-domain, hydrolase; 1.80A {Escherichia coli} SCOP: a.174.1.1 PDB: 1r6c_X 1r6o_A* 1r6q_A* 1mg9_B* 1lzw_B* 1mbx_A* 1mbv_A 1mbu_A*
Probab=87.84 E-value=0.63 Score=29.22 Aligned_cols=34 Identities=24% Similarity=0.283 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHhcCCCcccHHHHHHHHhcchh
Q psy15119 59 AAEVLELAGNAARDNKKTRIIPRHLQLAIRNDEE 92 (96)
Q Consensus 59 ~~eIlela~~~a~~~~~k~Itp~~i~~ai~~d~e 92 (96)
+.++++.|.+.|...+...|+|+|+-+++-.+++
T Consensus 6 ~~~~l~~A~~~A~~~~~~~i~~eHlLlaLl~~~~ 39 (143)
T 1k6k_A 6 LELSLNMAFARAREHRHEFMTVEHLLLALLSNPS 39 (143)
T ss_dssp HHHHHHHHHHHHHHHTBSEECHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHcCCCCcCHHHHHHHHHcCch
Confidence 4578899999999999999999999999976653
No 57
>3zri_A CLPB protein, CLPV; chaperone, HSP100 proteins, AAA+ proteins, T6SS, secretion,; 1.80A {Vibrio cholerae} PDB: 3zrj_A
Probab=87.30 E-value=0.76 Score=30.63 Aligned_cols=33 Identities=12% Similarity=0.163 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHhcCCCcccHHHHHHHHhcch
Q psy15119 59 AAEVLELAGNAARDNKKTRIIPRHLQLAIRNDE 91 (96)
Q Consensus 59 ~~eIlela~~~a~~~~~k~Itp~~i~~ai~~d~ 91 (96)
+.++++.|.+.|...+...|+|+||-+|+-.++
T Consensus 29 a~~aL~~A~~~A~~~~h~~I~~EHLLlaLL~~~ 61 (171)
T 3zri_A 29 SKLALEQAASLCIERQHPEVTLEHYLDVLLDNP 61 (171)
T ss_dssp HHHHHHHHHHHHHHHTCSEECHHHHHHHHTTCT
T ss_pred HHHHHHHHHHHHHHcCCCcccHHHHHHHHHHcc
Confidence 346788999999999999999999999998764
No 58
>1k6k_A ATP-dependent CLP protease ATP-binding subunit CLPA; chaperone, ATPase, adaptor binding, X-RAY, structure, N-domain, hydrolase; 1.80A {Escherichia coli} SCOP: a.174.1.1 PDB: 1r6c_X 1r6o_A* 1r6q_A* 1mg9_B* 1lzw_B* 1mbx_A* 1mbv_A 1mbu_A*
Probab=85.63 E-value=1.3 Score=27.69 Aligned_cols=33 Identities=15% Similarity=0.179 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHhcCCCcccHHHHHHHHhcch
Q psy15119 59 AAEVLELAGNAARDNKKTRIIPRHLQLAIRNDE 91 (96)
Q Consensus 59 ~~eIlela~~~a~~~~~k~Itp~~i~~ai~~d~ 91 (96)
+..+++.|..+|...+...|+++||-+|+-.++
T Consensus 84 ~~~~l~~A~~~A~~~~~~~i~~ehLLlall~~~ 116 (143)
T 1k6k_A 84 FQRVLQRAVFHVQSSGRNEVTGANVLVAIFSEQ 116 (143)
T ss_dssp HHHHHHHHHHHHHSSSCSCBCHHHHHHHHTTCT
T ss_pred HHHHHHHHHHHHHHcCCCccCHHHHHHHHHhCc
Confidence 456889999999999999999999999997654
No 59
>3v9r_B MHF2, uncharacterized protein YDL160C-A; histone fold, fanconi anemia, DNA repair, DNA BI protein; 2.40A {Saccharomyces cerevisiae}
Probab=84.02 E-value=5.3 Score=24.24 Aligned_cols=61 Identities=7% Similarity=0.128 Sum_probs=44.4
Q ss_pred cchhhhhhhhhcC--CcccccCCChHHHHHHHHHHHHHHHHHHHHHHHHhcCC-------CcccHHHHHH
Q psy15119 25 FPVGRIHRLLRKG--NYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKK-------TRIIPRHLQL 85 (96)
Q Consensus 25 fpv~ri~r~lk~~--~~~~ris~~A~v~laavLEyl~~eIlela~~~a~~~~~-------k~Itp~~i~~ 85 (96)
+|..-+.|+|... ...-||+.+|...++..++-|+.|.+-.|.......+. ..++-+|++.
T Consensus 2 ip~~llaRIL~~~F~~~kTrIt~da~~lv~kY~diFVrEAv~Rs~e~ke~~~~~~~~~~d~~LeveDLEk 71 (88)
T 3v9r_B 2 LSKEALIKILSQNEGGNDMKIADEVVPMIQKYLDIFIDEAVLRSLQSHKDINGERGDKSPLELSHQDLER 71 (88)
T ss_dssp CCSHHHHHHHTTTSCSSCCEECTTTHHHHHHHHHHHHHHHHHHHHHHHHCC-----------CCHHHHHH
T ss_pred CCHHHHHHHHHHHhCCCCceecHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCCCeeehHHHHH
Confidence 5777788888753 23479999999999999999999999999765554332 3566666653
No 60
>2y1q_A CLPC N-domain, negative regulator of genetic competence CLPC/MEC; transcription, proteolysis; 1.50A {Bacillus subtilis} PDB: 2y1r_A* 2k77_A
Probab=83.60 E-value=1.5 Score=27.70 Aligned_cols=33 Identities=24% Similarity=0.345 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHhcCCCcccHHHHHHHHhcch
Q psy15119 59 AAEVLELAGNAARDNKKTRIIPRHLQLAIRNDE 91 (96)
Q Consensus 59 ~~eIlela~~~a~~~~~k~Itp~~i~~ai~~d~ 91 (96)
+..+++.|..+|...+...|+++||-+|+-.++
T Consensus 84 ~~~vL~~A~~~A~~~~~~~i~~ehlLlall~~~ 116 (150)
T 2y1q_A 84 AKKVIELSMDEARKLGHSYVGTEHILLGLIREG 116 (150)
T ss_dssp HHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHcCCCeecHHHHHHHHHhCC
Confidence 456788999999999999999999999997553
No 61
>3zri_A CLPB protein, CLPV; chaperone, HSP100 proteins, AAA+ proteins, T6SS, secretion,; 1.80A {Vibrio cholerae} PDB: 3zrj_A
Probab=83.36 E-value=1.5 Score=29.11 Aligned_cols=32 Identities=16% Similarity=0.103 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHH-hcCCCcccHHHHHHHHhcch
Q psy15119 60 AEVLELAGNAAR-DNKKTRIIPRHLQLAIRNDE 91 (96)
Q Consensus 60 ~eIlela~~~a~-~~~~k~Itp~~i~~ai~~d~ 91 (96)
.++|+.|..+|. ..|...|+++||-+|+-.|+
T Consensus 104 ~~vL~~A~~~A~l~~gd~~I~teHLLLALl~~~ 136 (171)
T 3zri_A 104 VELLQEAWLLSSTELEQAELRSGAIFLAALTRA 136 (171)
T ss_dssp HHHHHHHHHHHHTTTCCSSBCHHHHHHHHHHTH
T ss_pred HHHHHHHHHHHHHHcCCCEEcHHHHHHHHHhCh
Confidence 467899999999 99999999999999998765
No 62
>1khy_A CLPB protein; alpha helix, chaperone; 1.95A {Escherichia coli} SCOP: a.174.1.1
Probab=78.55 E-value=2.8 Score=26.18 Aligned_cols=31 Identities=23% Similarity=0.207 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHhcCCCcccHHHHHHHHhc
Q psy15119 59 AAEVLELAGNAARDNKKTRIIPRHLQLAIRN 89 (96)
Q Consensus 59 ~~eIlela~~~a~~~~~k~Itp~~i~~ai~~ 89 (96)
+..+++.|..+|...+...|+++|+-+|+-.
T Consensus 87 ~~~vl~~A~~~a~~~~~~~i~~ehlLlall~ 117 (148)
T 1khy_A 87 LVRVLNLCDKLAQKRGDNFISSELFVLAALE 117 (148)
T ss_dssp HHHHHHHHHHHHHHHTCSSBCHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHcCCCeecHHHHHHHHHc
Confidence 5567888999999889999999999999984
No 63
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=74.87 E-value=14 Score=25.75 Aligned_cols=62 Identities=18% Similarity=0.203 Sum_probs=44.9
Q ss_pred hhhhhhhhhcC----CcccccCCChHHHHHHHHH------HHHHHHHHHHHHHHHhcCCCcccHHHHHHHHh
Q psy15119 27 VGRIHRLLRKG----NYAERVGAGAPVYLAAVME------YLAAEVLELAGNAARDNKKTRIIPRHLQLAIR 88 (96)
Q Consensus 27 v~ri~r~lk~~----~~~~ris~~A~v~laavLE------yl~~eIlela~~~a~~~~~k~Itp~~i~~ai~ 88 (96)
...+..+++.. .....++.++..+++.... ..+..+++.+...|...+...|+.+|+..++.
T Consensus 203 ~~~~~~il~~~~~~~~~~~~~~~~~~~~l~~~~~~~~G~~r~~~~~l~~a~~~a~~~~~~~i~~~~v~~a~~ 274 (387)
T 2v1u_A 203 APQLRDILETRAEEAFNPGVLDPDVVPLCAALAAREHGDARRALDLLRVAGEIAERRREERVRREHVYSARA 274 (387)
T ss_dssp HHHHHHHHHHHHHHHBCTTTBCSSHHHHHHHHHHSSSCCHHHHHHHHHHHHHHHHHTTCSCBCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHH
Confidence 34555555542 1124677888888887776 55668888888888887888999999998875
No 64
>3kw6_A 26S protease regulatory subunit 8; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Homo sapiens}
Probab=71.25 E-value=6.7 Score=22.07 Aligned_cols=37 Identities=11% Similarity=0.111 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHhc
Q psy15119 49 VYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIRN 89 (96)
Q Consensus 49 v~laavLEyl~~eIlela~~~a~~~~~k~Itp~~i~~ai~~ 89 (96)
-|-.|=|+.++.+.. ..|-..+...|+.+|+..|+..
T Consensus 36 G~SGADi~~l~~eA~----~~a~~~~~~~i~~~d~~~Al~~ 72 (78)
T 3kw6_A 36 GASGAEVKGVCTEAG----MYALRERRVHVTQEDFEMAVAK 72 (78)
T ss_dssp TCCHHHHHHHHHHHH----HHHHHTTCSEECHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH----HHHHHhCCCCCCHHHHHHHHHH
Confidence 344444555444443 4444557788999999999864
No 65
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=69.16 E-value=5.2 Score=30.16 Aligned_cols=34 Identities=26% Similarity=0.370 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHHhcCCCcccHHHHHHHHhcchh
Q psy15119 59 AAEVLELAGNAARDNKKTRIIPRHLQLAIRNDEE 92 (96)
Q Consensus 59 ~~eIlela~~~a~~~~~k~Itp~~i~~ai~~d~e 92 (96)
+..+++.|..+|...+...|.++||-+|+-.+++
T Consensus 84 ~~~vL~~A~~~A~~~g~~~I~teHLLlaLl~~~~ 117 (468)
T 3pxg_A 84 AKKVIELSMDEARKLGHSYVGTEHILLGLIREGE 117 (468)
T ss_dssp HHHHHHHHHHHHHTTTCSSBCHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHHHcCCCeecHHHHHHHHHhccc
Confidence 3567888999999999999999999999976653
No 66
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=68.85 E-value=5.2 Score=30.14 Aligned_cols=33 Identities=27% Similarity=0.294 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHhcCCCcccHHHHHHHHhcch
Q psy15119 59 AAEVLELAGNAARDNKKTRIIPRHLQLAIRNDE 91 (96)
Q Consensus 59 ~~eIlela~~~a~~~~~k~Itp~~i~~ai~~d~ 91 (96)
+.++++.|...|...+...|+|+||-+++-.++
T Consensus 10 a~~al~~A~~~A~~~~h~~v~~eHLLlaLl~~~ 42 (468)
T 3pxg_A 10 AQKVLALAQEEALRLGHNNIGTEHILLGLVREG 42 (468)
T ss_dssp HHHHHHHHHHHHHHTTCSEECHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHcCCCcccHHHHHHHHHhcc
Confidence 456888999999999999999999999987653
No 67
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=65.86 E-value=16 Score=25.40 Aligned_cols=47 Identities=19% Similarity=-0.024 Sum_probs=34.3
Q ss_pred ccCCChHHHHHHHHHH-------HHHHHHHHHHHHHHhcCCCcccHHHHHHHHh
Q psy15119 42 RVGAGAPVYLAAVMEY-------LAAEVLELAGNAARDNKKTRIIPRHLQLAIR 88 (96)
Q Consensus 42 ris~~A~v~laavLEy-------l~~eIlela~~~a~~~~~k~Itp~~i~~ai~ 88 (96)
.++.++..||.....- -+..+++.|...|...++..|+++|+..++.
T Consensus 267 ~ls~~~~~~l~~~~~~~~~~~~R~~~~ll~~a~~~A~~~~~~~v~~~~v~~a~~ 320 (350)
T 1g8p_A 267 EAPNTALYDCAALCIALGSDGLRGELTLLRSARALAALEGATAVGRDHLKRVAT 320 (350)
T ss_dssp BCCHHHHHHHHHHHHHSSSCSHHHHHHHHHHHHHHHHHTTCSBCCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhCCCCccHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHH
Confidence 5677777776665443 2346777777888778888999999998774
No 68
>2dzn_B 26S protease regulatory subunit 6B homolog; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} PDB: 2dzo_B
Probab=63.65 E-value=14 Score=21.00 Aligned_cols=46 Identities=15% Similarity=0.046 Sum_probs=33.1
Q ss_pred ccccCCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHhc
Q psy15119 40 AERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIRN 89 (96)
Q Consensus 40 ~~ris~~A~v~laavLEyl~~eIlela~~~a~~~~~k~Itp~~i~~ai~~ 89 (96)
...+...+.-|-.|=|+.++.|....|. ..+...|+.+|+..|+..
T Consensus 22 l~~lA~~t~G~SGADi~~l~~eAa~~ai----~~~~~~i~~~df~~Al~~ 67 (82)
T 2dzn_B 22 LDSLIIRNDSLSGAVIAAIMQEAGLRAV----RKNRYVILQSDLEEAYAT 67 (82)
T ss_dssp STTTTTSSCCCCHHHHHHHHHHHHHHHH----HTTCSEECHHHHHHHHHT
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHHH----HhccCCcCHHHHHHHHHH
Confidence 4556666666778888887776654443 446678999999999864
No 69
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=63.38 E-value=7.3 Score=31.00 Aligned_cols=33 Identities=27% Similarity=0.294 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHHhcCCCcccHHHHHHHHhcch
Q psy15119 59 AAEVLELAGNAARDNKKTRIIPRHLQLAIRNDE 91 (96)
Q Consensus 59 ~~eIlela~~~a~~~~~k~Itp~~i~~ai~~d~ 91 (96)
+.++++.|.+.|...+...|+|+||-+++-.++
T Consensus 10 a~~~l~~A~~~A~~~~h~~i~~eHlLlaLl~~~ 42 (758)
T 3pxi_A 10 AQKVLALAQEEALRLGHNNIGTEHILLGLVREG 42 (758)
T ss_dssp HHHHHHHHHHHHHHTTCSEECHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHcCCCcccHHHHHHHHHhcc
Confidence 456788999999999999999999999987553
No 70
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=61.55 E-value=24 Score=24.51 Aligned_cols=49 Identities=18% Similarity=0.177 Sum_probs=35.2
Q ss_pred cccCCChHHHHHHHHH------HHHHHHHHHHHHHHHhcCCCcccHHHHHHHHhc
Q psy15119 41 ERVGAGAPVYLAAVME------YLAAEVLELAGNAARDNKKTRIIPRHLQLAIRN 89 (96)
Q Consensus 41 ~ris~~A~v~laavLE------yl~~eIlela~~~a~~~~~k~Itp~~i~~ai~~ 89 (96)
.-++.++..+++.... ..+.+++..+...|...+...|+.+|+..++..
T Consensus 217 ~~~~~~~~~~l~~~~~~~~G~~r~~~~ll~~a~~~a~~~~~~~i~~~~v~~a~~~ 271 (386)
T 2qby_A 217 GVLPDNVIKLCAALAAREHGDARRALDLLRVSGEIAERMKDTKVKEEYVYMAKEE 271 (386)
T ss_dssp SCSCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCCccCHHHHHHHHHH
Confidence 3566667777776655 234457777877777778889999999988753
No 71
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=60.72 E-value=9.5 Score=30.21 Aligned_cols=34 Identities=24% Similarity=0.283 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHHhcCCCcccHHHHHHHHhcchh
Q psy15119 59 AAEVLELAGNAARDNKKTRIIPRHLQLAIRNDEE 92 (96)
Q Consensus 59 ~~eIlela~~~a~~~~~k~Itp~~i~~ai~~d~e 92 (96)
+.+++..|...|...+...|+|+||-+++-.|++
T Consensus 6 a~~~l~~A~~~A~~~~h~~i~~eHLLlaLl~~~~ 39 (758)
T 1r6b_X 6 LELSLNMAFARAREHRHEFMTVEHLLLALLSNPS 39 (758)
T ss_dssp HHHHHHHHHHHHHHTTBSEECHHHHHHHHTTSHH
T ss_pred HHHHHHHHHHHHHHcCCCCccHHHHHHHHHcCcH
Confidence 4578899999999999999999999999977654
No 72
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=60.54 E-value=8.9 Score=30.49 Aligned_cols=34 Identities=26% Similarity=0.370 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHhcCCCcccHHHHHHHHhcchh
Q psy15119 59 AAEVLELAGNAARDNKKTRIIPRHLQLAIRNDEE 92 (96)
Q Consensus 59 ~~eIlela~~~a~~~~~k~Itp~~i~~ai~~d~e 92 (96)
+..+++.|..+|...|...|.++||-+|+-.+++
T Consensus 84 ~~~vl~~A~~~A~~~~~~~I~~ehlLlall~~~~ 117 (758)
T 3pxi_A 84 AKKVIELSMDEARKLGHSYVGTEHILLGLIREGE 117 (758)
T ss_dssp HHHHHHHHHHHHHTTTCSSBCHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHHHcCCCcccHHHHHHHHHhcCC
Confidence 3567889999999999999999999999976643
No 73
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=58.12 E-value=26 Score=24.61 Aligned_cols=49 Identities=14% Similarity=0.091 Sum_probs=35.7
Q ss_pred cccCCChHHHHHHHHH-H---HHHHHHHHHHHHHHhcCCCcccHHHHHHHHhc
Q psy15119 41 ERVGAGAPVYLAAVME-Y---LAAEVLELAGNAARDNKKTRIIPRHLQLAIRN 89 (96)
Q Consensus 41 ~ris~~A~v~laavLE-y---l~~eIlela~~~a~~~~~k~Itp~~i~~ai~~ 89 (96)
..++.++..+++...+ . .+..+++.|...|...+...|+.+|++.++..
T Consensus 277 ~~~~~~~l~~l~~~~~~G~~r~~~~ll~~a~~~A~~~~~~~It~~~v~~a~~~ 329 (368)
T 3uk6_A 277 VEMSEDAYTVLTRIGLETSLRYAIQLITAASLVCRKRKGTEVQVDDIKRVYSL 329 (368)
T ss_dssp CCBCHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Confidence 3477777777776665 2 33456777777777778899999999998863
No 74
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=57.86 E-value=28 Score=26.93 Aligned_cols=30 Identities=17% Similarity=0.221 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHhcCCCcccHHHHHHHHhc
Q psy15119 60 AEVLELAGNAARDNKKTRIIPRHLQLAIRN 89 (96)
Q Consensus 60 ~eIlela~~~a~~~~~k~Itp~~i~~ai~~ 89 (96)
..+++.|...|...++..|+++|+..|+..
T Consensus 345 ~~llr~A~~~A~~~~~~~I~~edv~~A~~~ 374 (604)
T 3k1j_A 345 GGIVRAAGDIAVKKGKKYVEREDVIEAVKM 374 (604)
T ss_dssp HHHHHHHHHHHHHTTCSSBCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCcccccHHHHHHHHHh
Confidence 357888888888889999999999999864
No 75
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=57.10 E-value=12 Score=30.35 Aligned_cols=33 Identities=33% Similarity=0.238 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHHhcCCCcccHHHHHHHHhcch
Q psy15119 59 AAEVLELAGNAARDNKKTRIIPRHLQLAIRNDE 91 (96)
Q Consensus 59 ~~eIlela~~~a~~~~~k~Itp~~i~~ai~~d~ 91 (96)
+.++++.|...|...+...|+|+||-+++-.++
T Consensus 10 a~~al~~A~~~A~~~~h~~i~~eHLLlaLl~~~ 42 (854)
T 1qvr_A 10 AREALAQAQVLAQRMKHQAIDLPHLWAVLLKDE 42 (854)
T ss_dssp HHHHHHHHHHHHHHTTCSEECHHHHHHHHCCSS
T ss_pred HHHHHHHHHHHHHHcCCCCccHHHHHHHHHhCC
Confidence 456889999999999999999999999997654
No 76
>2vxz_A Pyrsv_GP04; viral protein, SSPF, ORF165A; 1.7A {Pyrobaculum spherical virus}
Probab=55.54 E-value=28 Score=23.26 Aligned_cols=36 Identities=22% Similarity=0.203 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHHHhcCCCcccHHHHHHHHhcchhc
Q psy15119 58 LAAEVLELAGNAARDNKKTRIIPRHLQLAIRNDEEL 93 (96)
Q Consensus 58 l~~eIlela~~~a~~~~~k~Itp~~i~~ai~~d~eL 93 (96)
.+.++++.-...-...|.+-|+|.++..-|..|.+-
T Consensus 75 kV~dilrel~~~l~s~gvk~i~p~~l~~li~~d~~~ 110 (165)
T 2vxz_A 75 LVDGMIREVERLVTTNKLKFISPPRLHDLIIKDPQA 110 (165)
T ss_dssp HHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHSHHH
T ss_pred HHHHHHHHHHHHHHHcCCeeeCcHHHHHHHHhCHHH
Confidence 677777777777788999999999999999999763
No 77
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=54.84 E-value=14 Score=29.18 Aligned_cols=33 Identities=15% Similarity=0.179 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHHhcCCCcccHHHHHHHHhcch
Q psy15119 59 AAEVLELAGNAARDNKKTRIIPRHLQLAIRNDE 91 (96)
Q Consensus 59 ~~eIlela~~~a~~~~~k~Itp~~i~~ai~~d~ 91 (96)
+..+++.|..+|...+...|+++||-+|+-.++
T Consensus 84 ~~~vl~~A~~~a~~~~~~~I~~ehlLlall~~~ 116 (758)
T 1r6b_X 84 FQRVLQRAVFHVQSSGRNEVTGANVLVAIFSEQ 116 (758)
T ss_dssp HHHHHHHHHHHHHHHTCSSBCHHHHHHHHTTCT
T ss_pred HHHHHHHHHHHHHHcCCCEeeHHHHHHHHhccc
Confidence 456888899999888999999999999998764
No 78
>3vlf_B 26S protease regulatory subunit 7 homolog; heat repeat, chaperone, chaperone-protein binding complex; HET: DNA; 3.80A {Saccharomyces cerevisiae} PDB: 4a3v_B*
Probab=53.52 E-value=22 Score=20.54 Aligned_cols=39 Identities=13% Similarity=0.099 Sum_probs=24.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHhc
Q psy15119 47 APVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIRN 89 (96)
Q Consensus 47 A~v~laavLEyl~~eIlela~~~a~~~~~k~Itp~~i~~ai~~ 89 (96)
+.-|..|=|+.++.|-.- .|-..+...|+.+|+..|+..
T Consensus 32 t~G~SGADl~~l~~eAa~----~a~r~~~~~i~~~df~~Al~~ 70 (88)
T 3vlf_B 32 CPNSTGAELRSVCTEAGM----FAIRARRKVATEKDFLKAVDK 70 (88)
T ss_dssp CSSCCHHHHHHHHHHHHH----HHHHHSCSSBCHHHHHHHHHH
T ss_pred cCCCcHHHHHHHHHHHHH----HHHHhccccCCHHHHHHHHHH
Confidence 333445555555555443 333446678999999999863
No 79
>2krk_A 26S protease regulatory subunit 8; structural genomics, northeast structural genomics consortium (NESG), target HR3102A, PSI-2; NMR {Homo sapiens}
Probab=52.49 E-value=23 Score=20.51 Aligned_cols=45 Identities=11% Similarity=0.178 Sum_probs=28.9
Q ss_pred cccCCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHhc
Q psy15119 41 ERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIRN 89 (96)
Q Consensus 41 ~ris~~A~v~laavLEyl~~eIlela~~~a~~~~~k~Itp~~i~~ai~~ 89 (96)
..|...+.-|..|=|+.++.|....| -..+...|+.+|+..|+..
T Consensus 36 ~~LA~~T~G~SGADL~~l~~eAa~~a----lr~~~~~I~~~df~~Al~~ 80 (86)
T 2krk_A 36 RKIAELMPGASGAEVKGVCTEAGMYA----LRERRVHVTQEDFEMAVAK 80 (86)
T ss_dssp HHHHHTCSSCCHHHHHHHHHHHHHHH----HHTTCSEECHHHHHHHHHH
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHHHH----HHHcCCCCCHHHHHHHHHH
Confidence 34444445566666776666655443 3445678999999999863
No 80
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=51.96 E-value=22 Score=23.77 Aligned_cols=27 Identities=15% Similarity=0.026 Sum_probs=20.3
Q ss_pred HHHHHHHHHHhcCCCcccHHHHHHHHh
Q psy15119 62 VLELAGNAARDNKKTRIIPRHLQLAIR 88 (96)
Q Consensus 62 Ilela~~~a~~~~~k~Itp~~i~~ai~ 88 (96)
++..|...|...++..|+.+|+..|+.
T Consensus 224 l~~~a~~~a~~~~~~~i~~~~~~~a~~ 250 (257)
T 1lv7_A 224 LVNEAALFAARGNKRVVSMVEFEKAKD 250 (257)
T ss_dssp HHHHHHHHHHHTTCSSBCHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCcccHHHHHHHHH
Confidence 444555566667788999999999885
No 81
>3aji_B S6C, proteasome (prosome, macropain) 26S subunit, ATPA; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dwz_B* 2dvw_B*
Probab=51.64 E-value=18 Score=20.39 Aligned_cols=41 Identities=12% Similarity=0.099 Sum_probs=25.4
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHhc
Q psy15119 45 AGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIRN 89 (96)
Q Consensus 45 ~~A~v~laavLEyl~~eIlela~~~a~~~~~k~Itp~~i~~ai~~ 89 (96)
..+.-|-.|=|+.++.+.. ..|-..+...|+.+|+..|+..
T Consensus 30 ~~t~G~SGADi~~l~~eA~----~~a~~~~~~~i~~~df~~Al~~ 70 (83)
T 3aji_B 30 ARPDKISGADINSICQESG----MLAVRENRYIVLAKDFEKAYKT 70 (83)
T ss_dssp TSSCCCCHHHHHHHHHHHH----HGGGTSCCSSBCHHHHHHHHHH
T ss_pred HHcCCCCHHHHHHHHHHHH----HHHHHhccCCcCHHHHHHHHHH
Confidence 3334455555555555443 3344456678999999998863
No 82
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=46.50 E-value=30 Score=23.34 Aligned_cols=29 Identities=14% Similarity=0.150 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHhcCCCcccHHHHHHHHhc
Q psy15119 61 EVLELAGNAARDNKKTRIIPRHLQLAIRN 89 (96)
Q Consensus 61 eIlela~~~a~~~~~k~Itp~~i~~ai~~ 89 (96)
.++..|...|...++..|+++|+..|+..
T Consensus 229 ~l~~~a~~~a~~~~~~~I~~~d~~~al~~ 257 (285)
T 3h4m_A 229 AICTEAGMNAIRELRDYVTMDDFRKAVEK 257 (285)
T ss_dssp HHHHHHHHHHHHTTCSSBCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCcCCHHHHHHHHHH
Confidence 45555666666778889999999998863
No 83
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=45.30 E-value=26 Score=23.34 Aligned_cols=26 Identities=23% Similarity=0.229 Sum_probs=18.7
Q ss_pred HHHHHHHHHHhcCCCcccHHHHHHHH
Q psy15119 62 VLELAGNAARDNKKTRIIPRHLQLAI 87 (96)
Q Consensus 62 Ilela~~~a~~~~~k~Itp~~i~~ai 87 (96)
++..|...|...+...|+.+|++.|+
T Consensus 228 ~~~~a~~~a~~~~~~~I~~~dl~~a~ 253 (254)
T 1ixz_A 228 LLNEAALLAAREGRRKITMKDLEEAA 253 (254)
T ss_dssp HHHHHHHHHHHTTCSSBCHHHHHHHT
T ss_pred HHHHHHHHHHHhcCCCcCHHHHHHHh
Confidence 44455555656677789999999876
No 84
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=44.44 E-value=27 Score=23.81 Aligned_cols=26 Identities=23% Similarity=0.229 Sum_probs=18.8
Q ss_pred HHHHHHHHHHhcCCCcccHHHHHHHH
Q psy15119 62 VLELAGNAARDNKKTRIIPRHLQLAI 87 (96)
Q Consensus 62 Ilela~~~a~~~~~k~Itp~~i~~ai 87 (96)
+++.|...|...+...|+.+|++.|+
T Consensus 252 l~~~a~~~a~~~~~~~I~~~dl~~a~ 277 (278)
T 1iy2_A 252 LLNEAALLAAREGRRKITMKDLEEAA 277 (278)
T ss_dssp HHHHHHHHHHHTTCCSBCHHHHHHHT
T ss_pred HHHHHHHHHHHhCCCCcCHHHHHHHh
Confidence 44555555656677789999999876
No 85
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=44.09 E-value=23 Score=27.63 Aligned_cols=48 Identities=10% Similarity=0.160 Sum_probs=36.1
Q ss_pred cccCCChHHHHHHHHHHH------------------HHHHHHHHHHHHHhcCCCcccHHHHHHHHh
Q psy15119 41 ERVGAGAPVYLAAVMEYL------------------AAEVLELAGNAARDNKKTRIIPRHLQLAIR 88 (96)
Q Consensus 41 ~ris~~A~v~laavLEyl------------------~~eIlela~~~a~~~~~k~Itp~~i~~ai~ 88 (96)
..++.+|..+|......+ +..++.+|...|.-.++..|+++|+..|+.
T Consensus 520 p~ls~ea~~~l~~~y~~lR~~~~~~~~~~~~~s~R~l~~lirla~a~A~l~~~~~V~~~dv~~Ai~ 585 (595)
T 3f9v_A 520 PKITSEAKNLITDFFVEMRKKSSETPDSPILITPRQLEALIRISEAYAKMALKAEVTREDAERAIN 585 (595)
T ss_dssp CCCCCCTHHHHHHHHTTSSCSCCBCSSSCBCSSTTTTTHHHHHHHHHHHTTSSCCSSHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHhhccCCCccccccHHHHHHHHHHHHHHHHHhCcCCCCHHHHHHHHH
Confidence 367777777666543221 346788888888888999999999999985
No 86
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=39.98 E-value=28 Score=28.15 Aligned_cols=34 Identities=18% Similarity=0.147 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHhcCCCcccHHHHHHHHhcchh
Q psy15119 59 AAEVLELAGNAARDNKKTRIIPRHLQLAIRNDEE 92 (96)
Q Consensus 59 ~~eIlela~~~a~~~~~k~Itp~~i~~ai~~d~e 92 (96)
+..+++.|..+|...|...|+++||-+|+-.+++
T Consensus 87 ~~~vL~~A~~~a~~~g~~~I~~ehlLlall~~~~ 120 (854)
T 1qvr_A 87 LSGALNRAEGLMEELKDRYVAVDTLVLALAEATP 120 (854)
T ss_dssp HHHHHHHHHHHHHTTTCSSCCHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHHcCCcEeeHHHHHHHHHhccc
Confidence 4567889999999889999999999999976543
No 87
>4gqb_C Histone H4 peptide; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=39.86 E-value=14 Score=16.90 Aligned_cols=9 Identities=89% Similarity=1.487 Sum_probs=6.1
Q ss_pred CCCCCCCCC
Q psy15119 2 SGRGKGGKA 10 (96)
Q Consensus 2 ~~~~~~~~~ 10 (96)
||+||++|+
T Consensus 2 sgrgkggkg 10 (26)
T 4gqb_C 2 SGRGKGGKG 10 (26)
T ss_pred CCCCcCCcc
Confidence 677776664
No 88
>1f6v_A DNA transposition protein; MU phage, recombination, ATPase, DNA binding, high salt, solution structure, DNA binding protein; HET: DNA; NMR {Enterobacteria phage MU} SCOP: a.49.1.1
Probab=38.86 E-value=7.6 Score=23.66 Aligned_cols=29 Identities=24% Similarity=0.240 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHhcCCCcccHHHHHHHHh
Q psy15119 59 AAEVLELAGNAARDNKKTRIIPRHLQLAIR 88 (96)
Q Consensus 59 ~~eIlela~~~a~~~~~k~Itp~~i~~ai~ 88 (96)
+...|.+|...|.-+|.. |+..||..|-+
T Consensus 49 ltktLrLA~m~A~G~g~~-i~~~~I~~A~~ 77 (91)
T 1f6v_A 49 LNHSLRLAAMTAHGKGER-VNEDYLRQAFR 77 (91)
T ss_dssp HHHHHGGGTCTTCTTSCC-SSHHHHHHHHT
T ss_pred HHHHHHHHHHHhccCCCc-CCHHHHHHHHH
Confidence 445678888888776766 99999999986
No 89
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=38.82 E-value=33 Score=25.46 Aligned_cols=61 Identities=15% Similarity=0.131 Sum_probs=40.1
Q ss_pred hhhhhhhhcCC--cccccCCChHHHHHHHH-HH---HHHHHHHHHHHHHHhcCCCcccHHHHHHHHh
Q psy15119 28 GRIHRLLRKGN--YAERVGAGAPVYLAAVM-EY---LAAEVLELAGNAARDNKKTRIIPRHLQLAIR 88 (96)
Q Consensus 28 ~ri~r~lk~~~--~~~ris~~A~v~laavL-Ey---l~~eIlela~~~a~~~~~k~Itp~~i~~ai~ 88 (96)
..+..+|+... ....++.++..+++..- +- .+..+++.|...|...++..|+++|++.++.
T Consensus 369 ~e~~~iL~~~~~~~~~~~~~~~~~~i~~~a~~g~~r~a~~ll~~a~~~A~~~~~~~v~~~~v~~~~~ 435 (456)
T 2c9o_A 369 QEMKQIIKIRAQTEGINISEEALNHLGEIGTKTTLRYSVQLLTPANLLAKINGKDSIEKEHVEEISE 435 (456)
T ss_dssp HHHHHHHHHHHHHHTCCBCHHHHHHHHHHHHHSCHHHHHHTHHHHHHHHHHTTCSSBCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCCHHHHHHHHHHccCCCHHHHHHHHHHHHHHHhhcCCCccCHHHHHHHHH
Confidence 45666665421 11246666666666544 21 3455677777788888999999999998875
No 90
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=38.75 E-value=91 Score=21.69 Aligned_cols=60 Identities=22% Similarity=0.142 Sum_probs=36.8
Q ss_pred hhhhhhhhcC----CcccccCCChHHHHHHHHH------HHHHHHHHHHHHHHHhcCCCcccHHHHHHHHhc
Q psy15119 28 GRIHRLLRKG----NYAERVGAGAPVYLAAVME------YLAAEVLELAGNAARDNKKTRIIPRHLQLAIRN 89 (96)
Q Consensus 28 ~ri~r~lk~~----~~~~ris~~A~v~laavLE------yl~~eIlela~~~a~~~~~k~Itp~~i~~ai~~ 89 (96)
..+..+++.. -....++.++..+++.... ..+.++++.++..|. +...|+.+|+..++..
T Consensus 200 ~~~~~il~~~~~~~~~~~~~~~~~~~~i~~~~~~~~G~~r~a~~~l~~a~~~a~--~~~~i~~~~v~~~~~~ 269 (384)
T 2qby_B 200 EQLKFILSKYAEYGLIKGTYDDEILSYIAAISAKEHGDARKAVNLLFRAAQLAS--GGGIIRKEHVDKAIVD 269 (384)
T ss_dssp HHHHHHHHHHHHHTSCTTSCCSHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTT--SSSCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhcccCCcCHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhc--CCCccCHHHHHHHHHH
Confidence 4455555541 1123566666666666554 124467777777665 5678999999988753
No 91
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=37.32 E-value=48 Score=22.96 Aligned_cols=28 Identities=14% Similarity=0.189 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHhcCCCcccHHHHHHHHh
Q psy15119 61 EVLELAGNAARDNKKTRIIPRHLQLAIR 88 (96)
Q Consensus 61 eIlela~~~a~~~~~k~Itp~~i~~ai~ 88 (96)
.++..|...|.-.++..|+++|+..++.
T Consensus 268 ~ll~~a~a~A~l~g~~~v~~~dv~~~~~ 295 (331)
T 2r44_A 268 NLNRVAKAMAFFNNRDYVLPEDIKEVAY 295 (331)
T ss_dssp HHHHHHHHHHHHTTCSBCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCCCHHHHHHHHH
Confidence 3566676777778888999999998774
No 92
>2ly8_A Budding yeast chaperone SCM3; centromere protein, CENH3 variants, partially unfolded; NMR {Saccharomyces cerevisiae}
Probab=36.41 E-value=48 Score=20.96 Aligned_cols=42 Identities=21% Similarity=0.010 Sum_probs=34.9
Q ss_pred ccccCCChHHHHHHHHHHHHHHHHHHHHHHHHhc---CCCcccHH
Q psy15119 40 AERVGAGAPVYLAAVMEYLAAEVLELAGNAARDN---KKTRIIPR 81 (96)
Q Consensus 40 ~~ris~~A~v~laavLEyl~~eIlela~~~a~~~---~~k~Itp~ 81 (96)
..|..++|...|--+-|.++-.++|.+.-.|.|. |-+||+..
T Consensus 24 ~lRfq~~Al~ALQeAsEayLV~lFEd~nlcaiHA~~gGvkRIS~~ 68 (121)
T 2ly8_A 24 DLRWQSMAIMALQEASEAYLVGLLEHTNLLALHLVPRGSKRISGL 68 (121)
T ss_dssp SCCBCHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCSSCCSSC
T ss_pred CccccHHHHHHHHHHHHHHHHHHHHHHhHHHHcCCccCccchhHH
Confidence 4689999999999999999999999997766665 66777643
No 93
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=31.84 E-value=61 Score=20.66 Aligned_cols=47 Identities=13% Similarity=0.136 Sum_probs=27.0
Q ss_pred ccCCChHHHHHHHHHH---HHHHHHHHHHHHHHhcCCCcccHHHHHHHHhc
Q psy15119 42 RVGAGAPVYLAAVMEY---LAAEVLELAGNAARDNKKTRIIPRHLQLAIRN 89 (96)
Q Consensus 42 ris~~A~v~laavLEy---l~~eIlela~~~a~~~~~k~Itp~~i~~ai~~ 89 (96)
.++.++..+++...+- -+..+++.+...|...+ +.|+.++++.++.+
T Consensus 193 ~~~~~~~~~l~~~~~g~~r~l~~~l~~~~~~a~~~~-~~It~~~v~~~l~~ 242 (242)
T 3bos_A 193 QLPEDVGRFLLNRMARDLRTLFDVLDRLDKASMVHQ-RKLTIPFVKEMLRL 242 (242)
T ss_dssp CCCHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHT-CCCCHHHHHHHHTC
T ss_pred CCCHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHhC-CCCcHHHHHHHhhC
Confidence 4565565555554331 12234445555554434 46999999988753
No 94
>3tl4_X Glutaminyl-tRNA synthetase; glutamine, appended domain, hinge, tRNA LIG amidotransferase, ligase; 2.30A {Saccharomyces cerevisiae}
Probab=31.19 E-value=43 Score=22.63 Aligned_cols=42 Identities=10% Similarity=0.156 Sum_probs=26.3
Q ss_pred hHHHHHHHHHHHHHH--HHHHHHHHHHhcCC-CcccHHHHHHHHhc
Q psy15119 47 APVYLAAVMEYLAAE--VLELAGNAARDNKK-TRIIPRHLQLAIRN 89 (96)
Q Consensus 47 A~v~laavLEyl~~e--Ilela~~~a~~~~~-k~Itp~~i~~ai~~ 89 (96)
+..=+.|+++|+.+. -+..+ ..-+.+|. -.|||++|+.+|..
T Consensus 84 t~~Qv~AAl~yl~~~~~~id~~-~Fe~~cGVGV~VT~EqI~~~V~~ 128 (187)
T 3tl4_X 84 TSLQVDAAFKYVKANGEASTKM-GMNENSGVGIEITEDQVRNYVMQ 128 (187)
T ss_dssp SHHHHHHHHHHHHHHGGGCCHH-HHHHTTTTTCCCCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhCCCCCCHH-HHHHHCCCCeEeCHHHHHHHHHH
Confidence 556688999999764 11111 11123343 47999999998863
No 95
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=29.71 E-value=86 Score=21.77 Aligned_cols=31 Identities=23% Similarity=0.385 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHhcCCCcccHHHHHHHHhc
Q psy15119 59 AAEVLELAGNAARDNKKTRIIPRHLQLAIRN 89 (96)
Q Consensus 59 ~~eIlela~~~a~~~~~k~Itp~~i~~ai~~ 89 (96)
+.+++..+...|...+...|+.+|+..++..
T Consensus 243 ~~~~l~~a~~~a~~~~~~~i~~~~v~~~~~~ 273 (389)
T 1fnn_A 243 AIDILYRSAYAAQQNGRKHIAPEDVRKSSKE 273 (389)
T ss_dssp HHHHHHHHHHHHHHTTCSSCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCCcCHHHHHHHHHH
Confidence 4667777777787778889999999988753
No 96
>3f8t_A Predicted ATPase involved in replication control, CDC46/MCM family; helicase, MCM homolog, DNA replication, ATP-binding, DNA-binding; 1.90A {Methanopyrus kandleri AV19}
Probab=28.98 E-value=68 Score=25.07 Aligned_cols=64 Identities=20% Similarity=0.116 Sum_probs=41.5
Q ss_pred cchhhhhhhhhcC---CcccccCCChHHHHHHHHHHHH---------------------HHHHHHHHHHHHhcCCCcccH
Q psy15119 25 FPVGRIHRLLRKG---NYAERVGAGAPVYLAAVMEYLA---------------------AEVLELAGNAARDNKKTRIIP 80 (96)
Q Consensus 25 fpv~ri~r~lk~~---~~~~ris~~A~v~laavLEyl~---------------------~eIlela~~~a~~~~~k~Itp 80 (96)
++...+.+++.-- .....++..+..|+......+= ..++.+|-..|.-.++..++|
T Consensus 394 ls~e~L~~yi~~ar~~~~~p~ls~ea~~yI~~~y~~tR~~~~~~~~~~~~~~giSpR~leaLiRlA~A~A~L~gR~~V~~ 473 (506)
T 3f8t_A 394 PSYTLLRRYLLYAIREHPAPELTEEARKRLEHWYETRREEVEERLGMGLPTLPVTRRQLESVERLAKAHARMRLSDDVEP 473 (506)
T ss_dssp CCHHHHHHHHHHHHHHCSCCEECHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCCHHHHHHHHHHHHHHHHHTTCSEECH
T ss_pred CCHHHHHHHHHHHHhcCCCceeCHHHHHHHHHHHHHHhcCcccccccccccccccHHHHHHHHHHHHHHHHHcCcCCCCH
Confidence 4444455444321 2346788887777776543331 125666767788889999999
Q ss_pred HHHHHHHh
Q psy15119 81 RHLQLAIR 88 (96)
Q Consensus 81 ~~i~~ai~ 88 (96)
+|++.|+.
T Consensus 474 eDV~~Ai~ 481 (506)
T 3f8t_A 474 EDVDIAAE 481 (506)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99999885
No 97
>2v6z_M DNA polymerase epsilon subunit 2; DNA replication, DPOE2, transferase, AAA protein family; HET: DNA; NMR {Homo sapiens}
Probab=28.19 E-value=44 Score=20.43 Aligned_cols=71 Identities=20% Similarity=0.184 Sum_probs=37.2
Q ss_pred ccccCcccchhh--hhhhhhcC-C-cccccCCChHHHHHHHHHHHHH----HHHHHHHHHHHhc--CCCcccHHHHHHHH
Q psy15119 18 SSRAGLQFPVGR--IHRLLRKG-N-YAERVGAGAPVYLAAVMEYLAA----EVLELAGNAARDN--KKTRIIPRHLQLAI 87 (96)
Q Consensus 18 s~ra~l~fpv~r--i~r~lk~~-~-~~~ris~~A~v~laavLEyl~~----eIlela~~~a~~~--~~k~Itp~~i~~ai 87 (96)
|+-+.|+.-.+. +++.+... . .+.-+..+|..||+.+|+-+-. +.++.-....... ....|.-++|+.||
T Consensus 16 ~~~~~~~~~M~~~rlrk~I~k~FKL~Gl~Lr~dA~~~L~~~L~~~~~~e~e~~L~~Iid~lqkq~LsS~~Vdk~~VE~AV 95 (99)
T 2v6z_M 16 SSSARLQVDMAPERLRSRALSAFKLRGLLLRGEAIKYLTEALQSISELELEDKLEKIINAVEKQPLSSNMIERSVVEAAV 95 (99)
T ss_dssp ---------CCHHHHHHHHHHHHHHTTCEECHHHHHHHHHHTTTSCTTTHHHHHHHHHHHHTTSCCSSSEECHHHHHHHH
T ss_pred ccchhhhhcccHHHHHHHHHHHhhhcceeecHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHhCcCccccccHHHHHHHH
Confidence 455667776543 33333331 1 2356788999999887755533 4444444443333 45679999999998
Q ss_pred h
Q psy15119 88 R 88 (96)
Q Consensus 88 ~ 88 (96)
+
T Consensus 96 k 96 (99)
T 2v6z_M 96 Q 96 (99)
T ss_dssp H
T ss_pred H
Confidence 6
No 98
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=27.21 E-value=83 Score=24.00 Aligned_cols=24 Identities=17% Similarity=0.214 Sum_probs=17.9
Q ss_pred HHHHHHHhcCCCcccHHHHHHHHh
Q psy15119 65 LAGNAARDNKKTRIIPRHLQLAIR 88 (96)
Q Consensus 65 la~~~a~~~~~k~Itp~~i~~ai~ 88 (96)
.|...|-..++..|+.+|+..|+.
T Consensus 398 eA~~~Air~~~~~It~eDf~~Al~ 421 (437)
T 4b4t_I 398 EAGLLALRERRMQVTAEDFKQAKE 421 (437)
T ss_dssp HHHHHHHHTTCSCBCHHHHHHHHH
T ss_pred HHHHHHHHcCCCccCHHHHHHHHH
Confidence 344445556788899999999985
No 99
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=26.87 E-value=85 Score=23.59 Aligned_cols=24 Identities=21% Similarity=0.325 Sum_probs=17.8
Q ss_pred HHHHHHHhcCCCcccHHHHHHHHh
Q psy15119 65 LAGNAARDNKKTRIIPRHLQLAIR 88 (96)
Q Consensus 65 la~~~a~~~~~k~Itp~~i~~ai~ 88 (96)
.|...|-..++..|+.+|+..|+.
T Consensus 364 eA~~~Air~~~~~vt~~Df~~Al~ 387 (405)
T 4b4t_J 364 EAGMYALRERRIHVTQEDFELAVG 387 (405)
T ss_dssp HHHHHHHHTTCSBCCHHHHHHHHH
T ss_pred HHHHHHHHcCCCCcCHHHHHHHHH
Confidence 344445556788899999999985
No 100
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=25.99 E-value=90 Score=23.58 Aligned_cols=25 Identities=32% Similarity=0.365 Sum_probs=18.4
Q ss_pred HHHHHHHhcCCCcccHHHHHHHHhc
Q psy15119 65 LAGNAARDNKKTRIIPRHLQLAIRN 89 (96)
Q Consensus 65 la~~~a~~~~~k~Itp~~i~~ai~~ 89 (96)
.|...|-..++..|+.+|+..|+..
T Consensus 397 eA~~~air~~~~~i~~~d~~~Al~~ 421 (437)
T 4b4t_L 397 EAGFFAIRDDRDHINPDDLMKAVRK 421 (437)
T ss_dssp HHHHHHHHTTCSSBCHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCCCHHHHHHHHHH
Confidence 3444555567788999999999863
No 101
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=24.54 E-value=89 Score=23.51 Aligned_cols=27 Identities=22% Similarity=0.235 Sum_probs=19.3
Q ss_pred HHHHHHHHHhcCCCcccHHHHHHHHhc
Q psy15119 63 LELAGNAARDNKKTRIIPRHLQLAIRN 89 (96)
Q Consensus 63 lela~~~a~~~~~k~Itp~~i~~ai~~ 89 (96)
+..|+..|-..++..|+.+|+..|+..
T Consensus 387 ~~eA~~~a~r~~~~~i~~~d~~~A~~~ 413 (428)
T 4b4t_K 387 MQEAGLRAVRKNRYVILQSDLEEAYAT 413 (428)
T ss_dssp HHHHHHHHHHTTCSSBCHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCCCCCHHHHHHHHHH
Confidence 333444555667889999999999853
No 102
>2l09_A ASR4154 protein; proto-chlorophyllide reductase 57 KD subunit superfamily, ST genomics, PSI-2, protein structure initiative; NMR {Nostoc SP}
Probab=21.79 E-value=75 Score=17.73 Aligned_cols=26 Identities=15% Similarity=0.167 Sum_probs=20.6
Q ss_pred HHHHHHHHhcCCCcccHHHHHHHHhc
Q psy15119 64 ELAGNAARDNKKTRIIPRHLQLAIRN 89 (96)
Q Consensus 64 ela~~~a~~~~~k~Itp~~i~~ai~~ 89 (96)
...-.+|.+.|...||.+.+..|-..
T Consensus 26 r~tE~~Are~G~~~IT~ev~~~AK~~ 51 (62)
T 2l09_A 26 ARIEQLARQAEQDIVTPELVEQARLE 51 (62)
T ss_dssp HHHHHHHHHTTCSEECHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCeEcHHHHHHHHHH
Confidence 34456899999999999999877543
No 103
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=21.32 E-value=1.2e+02 Score=21.16 Aligned_cols=29 Identities=10% Similarity=0.015 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHhcCCCcccHHHHHHHHh
Q psy15119 60 AEVLELAGNAARDNKKTRIIPRHLQLAIR 88 (96)
Q Consensus 60 ~eIlela~~~a~~~~~k~Itp~~i~~ai~ 88 (96)
..+++.+...|...+...|+.++++.++.
T Consensus 220 ~~ll~~~~~~a~~~~~~~It~~~v~~al~ 248 (334)
T 1in4_A 220 IRLTKRVRDMLTVVKADRINTDIVLKTME 248 (334)
T ss_dssp HHHHHHHHHHHHHHTCSSBCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCCcCHHHHHHHHH
Confidence 35666666677666777899999998875
No 104
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=20.87 E-value=1.2e+02 Score=22.91 Aligned_cols=24 Identities=21% Similarity=0.210 Sum_probs=17.8
Q ss_pred HHHHHHhcCCCcccHHHHHHHHhc
Q psy15119 66 AGNAARDNKKTRIIPRHLQLAIRN 89 (96)
Q Consensus 66 a~~~a~~~~~k~Itp~~i~~ai~~ 89 (96)
|...|-..++..|+.+|+..|+..
T Consensus 398 A~~~a~r~~~~~i~~~Df~~Al~~ 421 (434)
T 4b4t_M 398 AGMIALRNGQSSVKHEDFVEGISE 421 (434)
T ss_dssp HHHHHHHHTCSSBCHHHHHHHHHS
T ss_pred HHHHHHHcCCCCcCHHHHHHHHHH
Confidence 444444557788999999999864
Done!