RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy15119
(96 letters)
>2nqb_C Histone H2A; nucleosome, NCP, chromatin, structural protein/DNA
complex; 2.30A {Drosophila melanogaster} PDB: 2pyo_C*
Length = 123
Score = 121 bits (305), Expect = 1e-37
Identities = 90/95 (94%), Positives = 93/95 (97%)
Query: 2 SGRGKGGKAKAKSKTRSSRAGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAE 61
SGRGKGGK K K+K+RS+RAGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAE
Sbjct: 1 SGRGKGGKVKGKAKSRSNRAGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAE 60
Query: 62 VLELAGNAARDNKKTRIIPRHLQLAIRNDEELNKL 96
VLELAGNAARDNKKTRIIPRHLQLAIRNDEELNKL
Sbjct: 61 VLELAGNAARDNKKTRIIPRHLQLAIRNDEELNKL 95
>2f8n_K Histone H2A type 1; nucleosome, NCP, macroh2A, histone variant,
chromatin, X- RAY structure, crystallography, structural
protein/DNA complex; 2.90A {Mus musculus} SCOP: a.22.1.1
Length = 149
Score = 120 bits (302), Expect = 7e-37
Identities = 89/97 (91%), Positives = 95/97 (97%), Gaps = 1/97 (1%)
Query: 1 MSGRGK-GGKAKAKSKTRSSRAGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLA 59
MSGRGK GGKA+AK+KTRSSRAGLQFPVGR+HRLLRKGNY+ERVGAGAPVYLAAV+EYL
Sbjct: 20 MSGRGKQGGKARAKAKTRSSRAGLQFPVGRVHRLLRKGNYSERVGAGAPVYLAAVLEYLT 79
Query: 60 AEVLELAGNAARDNKKTRIIPRHLQLAIRNDEELNKL 96
AE+LELAGNAARDNKKTRIIPRHLQLAIRNDEELNKL
Sbjct: 80 AEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKL 116
>1tzy_A Histone H2A-IV; histone-fold, tetramer-dimer-dimer, DNA binding
protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB:
1eqz_A 1hq3_A 2aro_A 2hio_A 3c9k_A 3azg_C 3a6n_C 3an2_C
3av1_C 3av2_C 3ayw_C 3aze_C 3azf_C 3afa_C 3azh_C 3azi_C
3azj_C 3azk_C 3azl_C 3azm_C ...
Length = 129
Score = 118 bits (296), Expect = 4e-36
Identities = 89/97 (91%), Positives = 95/97 (97%), Gaps = 1/97 (1%)
Query: 1 MSGRGK-GGKAKAKSKTRSSRAGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLA 59
MSGRGK GGKA+AK+K+RSSRAGLQFPVGR+HRLLRKGNYAERVGAGAPVYLAAV+EYL
Sbjct: 1 MSGRGKQGGKARAKAKSRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPVYLAAVLEYLT 60
Query: 60 AEVLELAGNAARDNKKTRIIPRHLQLAIRNDEELNKL 96
AE+LELAGNAARDNKKTRIIPRHLQLAIRNDEELNKL
Sbjct: 61 AEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKL 97
>2f8n_G Core histone macro-H2A.1; nucleosome, NCP, macroh2A, histone
variant, chromatin, X- RAY structure, crystallography,
structural protein/DNA complex; 2.90A {Homo sapiens}
SCOP: a.22.1.1 PDB: 1u35_C
Length = 120
Score = 113 bits (283), Expect = 2e-34
Identities = 59/96 (61%), Positives = 76/96 (79%), Gaps = 2/96 (2%)
Query: 1 MSGRGKGGKAKAKSKTRSSRAGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAA 60
MS RG GK K+ +RS++AG+ FPVGR+ R ++KG+ R+G GAPVY+AAV+EYL A
Sbjct: 1 MSSRG--GKKKSTKTSRSAKAGVIFPVGRMLRYIKKGHPKYRIGVGAPVYMAAVLEYLTA 58
Query: 61 EVLELAGNAARDNKKTRIIPRHLQLAIRNDEELNKL 96
E+LELA NAARDNKK R+ PRH+ LA+ NDEELN+L
Sbjct: 59 EILELAVNAARDNKKGRVTPRHILLAVANDEELNQL 94
>1id3_C Histone H2A.1; nucleosome core particle, chromatin, protein/DNA
interaction, nucleoprotein, supercoiled DNA; 3.10A
{Saccharomyces cerevisiae} SCOP: a.22.1.1
Length = 131
Score = 107 bits (268), Expect = 6e-32
Identities = 74/96 (77%), Positives = 87/96 (90%), Gaps = 1/96 (1%)
Query: 2 SGRG-KGGKAKAKSKTRSSRAGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAA 60
G+G K G A S++RS++AGL FPVGR+HRLLR+GNYA+R+G+GAPVYL AV+EYLAA
Sbjct: 2 GGKGGKAGSAAKASQSRSAKAGLTFPVGRVHRLLRRGNYAQRIGSGAPVYLTAVLEYLAA 61
Query: 61 EVLELAGNAARDNKKTRIIPRHLQLAIRNDEELNKL 96
E+LELAGNAARDNKKTRIIPRHLQLAIRND+ELNKL
Sbjct: 62 EILELAGNAARDNKKTRIIPRHLQLAIRNDDELNKL 97
>1f66_C Histone H2A.Z; nucleosome, chromatin, histone variant, protein DNA
interaction, nucleoprotein, supercoiled DNA, complex
(nucleosome core/DNA); 2.60A {Homo sapiens} SCOP:
a.22.1.1
Length = 128
Score = 100 bits (250), Expect = 3e-29
Identities = 63/100 (63%), Positives = 73/100 (73%), Gaps = 4/100 (4%)
Query: 1 MSGRGKG---GKAKAKSKTRSSRAGLQFPVGRIHRLLRKGNYAER-VGAGAPVYLAAVME 56
M+G G GKAK K+ +RS RAGLQFPVGRIHR L+ + VGA A VY AA++E
Sbjct: 1 MAGGKAGKDSGKAKTKAVSRSQRAGLQFPVGRIHRHLKSRTTSHGRVGATAAVYSAAILE 60
Query: 57 YLAAEVLELAGNAARDNKKTRIIPRHLQLAIRNDEELNKL 96
YL AEVLELAGNA++D K RI PRHLQLAIR DEEL+ L
Sbjct: 61 YLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDSL 100
>1jfi_A Transcription regulator NC2 alpha chain; histone, H2A/H2B,
tata-DNA, transcription initiation, NC2, negative
cofactor, structural genomics, PSI; 2.62A {Homo
sapiens} SCOP: a.22.1.3
Length = 98
Score = 83.0 bits (205), Expect = 1e-22
Identities = 14/77 (18%), Positives = 33/77 (42%)
Query: 16 TRSSRAGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKK 75
++ + +FP RI ++++ +V A PV ++ +E +L+ A +
Sbjct: 3 SKKKKYNARFPPARIKKIMQTDEEIGKVAAAVPVIISRALELFLESLLKKACQVTQSRNA 62
Query: 76 TRIIPRHLQLAIRNDEE 92
+ HL+ I + +
Sbjct: 63 KTMTTSHLKQCIELEGD 79
>2jss_A Chimera of histone H2B.1 and histone H2A.Z; histone/chaperone
complex, intrinsically unfolded protein,
chaperone/structural protein complex; NMR {Saccharomyces
cerevisiae} SCOP: a.22.1.1 a.22.1.1
Length = 192
Score = 77.9 bits (190), Expect = 1e-19
Identities = 52/85 (61%), Positives = 65/85 (76%), Gaps = 1/85 (1%)
Query: 13 KSKTRSSRAGLQFPVGRIHRLLRKGNYAER-VGAGAPVYLAAVMEYLAAEVLELAGNAAR 71
++++ S+RAGLQFPVGRI R L++ VG+ A +YL AV+EYL AEVLELAGNAA+
Sbjct: 94 QAQSSSARAGLQFPVGRIKRYLKRHATGRTRVGSKAAIYLTAVLEYLTAEVLELAGNAAK 153
Query: 72 DNKKTRIIPRHLQLAIRNDEELNKL 96
D K RI PRHLQLAIR D+EL+ L
Sbjct: 154 DLKVKRITPRHLQLAIRGDDELDSL 178
>1n1j_B NF-YC; histone-like PAIR, DNA binding protein; 1.67A {Homo
sapiens} SCOP: a.22.1.3
Length = 97
Score = 52.3 bits (125), Expect = 1e-10
Identities = 15/70 (21%), Positives = 31/70 (44%)
Query: 24 QFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHL 83
+ P+ RI ++++ + + A APV A + E+ A DNK+ + +
Sbjct: 19 ELPLARIKKIMKLDEDVKMISAEAPVLFAKAAQIFITELTLRAWIHTEDNKRRTLQRNDI 78
Query: 84 QLAIRNDEEL 93
+AI ++
Sbjct: 79 AMAITKFDQF 88
>3ksy_A SOS-1, SON of sevenless homolog 1; RAS, RAS activator, disease
mutation, guanine-nucleotide releasing factor, signaling
protein; 3.18A {Homo sapiens} PDB: 1xd4_A 1xdv_A 1q9c_A
Length = 1049
Score = 54.8 bits (131), Expect = 2e-10
Identities = 26/84 (30%), Positives = 49/84 (58%), Gaps = 1/84 (1%)
Query: 10 AKAKSKTRSSRAGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNA 69
A++ + R R L PV +IH LL++ ++ VY+ AV+EY++A++L+L GN
Sbjct: 90 AQSAIEKRKRRNPLSLPVEKIHPLLKEVL-GYKIDHQVSVYIVAVLEYISADILKLVGNY 148
Query: 70 ARDNKKTRIIPRHLQLAIRNDEEL 93
R+ + I + +++A+ D+ L
Sbjct: 149 VRNIRHYEITKQDIKVAMCADKVL 172
>2byk_A Chrac-16; nucleosome sliding, histone fold, DNA-binding protein;
2.4A {Drosophila melanogaster} SCOP: a.22.1.3 PDB:
2bym_A
Length = 140
Score = 40.1 bits (93), Expect = 1e-05
Identities = 10/88 (11%), Positives = 23/88 (26%), Gaps = 1/88 (1%)
Query: 7 GGKAKAKSKTRSSRAGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELA 66
G R A P+ R+ +++ + + E + A
Sbjct: 2 GEPRSQPPVERPPTAETFLPLSRVRTIMKSSMDTGLITNEVLFLMTKCTELFVRHLAGAA 61
Query: 67 GNAARDNKKTRII-PRHLQLAIRNDEEL 93
+ + HL + ++ L
Sbjct: 62 YTEEFGQRPGEALKYEHLSQVVNKNKNL 89
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 31.7 bits (71), Expect = 0.023
Identities = 14/80 (17%), Positives = 27/80 (33%), Gaps = 6/80 (7%)
Query: 13 KSKTRSSRAGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARD 72
+ K R ++ L + Y + P Y V L + L
Sbjct: 504 EQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAIL--DFLPKIEENLIC 561
Query: 73 NKKTRIIPRHLQLAIRNDEE 92
+K T + L++A+ ++E
Sbjct: 562 SKYTDL----LRIALMAEDE 577
Score = 29.1 bits (64), Expect = 0.23
Identities = 16/85 (18%), Positives = 25/85 (29%), Gaps = 29/85 (34%)
Query: 26 PVGRIHRLLRKGNYAERV------GAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRII 79
P ++ + L + A+ V G+G +A +V K +
Sbjct: 136 PYLKLRQALLELRPAKNVLIDGVLGSGKTW--------VALDVC-------LSYKVQCKM 180
Query: 80 PRH---LQLAIRNDEE-----LNKL 96
L L N E L KL
Sbjct: 181 DFKIFWLNLKNCNSPETVLEMLQKL 205
>1pzw_A Transcription factor grauzone; dimerization, transcription
regulation, treble-CLEF zinc FIN transcription; 2.00A
{Drosophila melanogaster} SCOP: g.39.1.10
Length = 80
Score = 28.8 bits (64), Expect = 0.096
Identities = 6/37 (16%), Positives = 19/37 (51%)
Query: 59 AAEVLELAGNAARDNKKTRIIPRHLQLAIRNDEELNK 95
A L++ + ++K ++ +H + ++E++K
Sbjct: 13 AQMCLQIFDVDSGESKVAEVLRQHFWFEVLPNDEISK 49
>2yfw_B Histone H4, H4; cell cycle, kinetochore, centromere, histone
chaperone, BUDD; 2.60A {Kluyveromyces lactis nrrl
y-1140}
Length = 103
Score = 28.1 bits (62), Expect = 0.27
Identities = 23/93 (24%), Positives = 37/93 (39%), Gaps = 6/93 (6%)
Query: 1 MSGRGKGGKAKAKSKTRSSRAGLQ-----FPVGRIHRLLRKGNYAERVGAGAPVYLAAVM 55
MSGRGKGGK K + R L+ I RL R+G +R+ + V+
Sbjct: 1 MSGRGKGGKGLGKGGAKRHRKILRDNIQGITKPAIRRLARRGG-VKRISGLIYEEVRNVL 59
Query: 56 EYLAAEVLELAGNAARDNKKTRIIPRHLQLAIR 88
+ V+ A K+ + + A++
Sbjct: 60 KTFLESVIRDAVTYTEHAKRKTVTSLDVVYALK 92
>1tzy_D Histone H4-VI; histone-fold, tetramer-dimer-dimer, DNA binding
protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB:
1f66_B 1eqz_D 1hq3_D 1u35_B 2aro_D 2cv5_B* 2f8n_B
3nqu_B 3r45_B 3azg_B 3a6n_B 3an2_B 3av1_B 3av2_B 3ayw_B
3aze_B 3azf_B 3afa_B 3azh_B 3azk_B ...
Length = 103
Score = 26.5 bits (58), Expect = 0.88
Identities = 23/93 (24%), Positives = 36/93 (38%), Gaps = 6/93 (6%)
Query: 1 MSGRGKGGKAKAKS----KTRSSRAGLQF-PVGRIHRLLRKGNYAERVGAGAPVYLAAVM 55
MSGRGKGGK K + R +Q I RL R+G +R+ V+
Sbjct: 1 MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGG-VKRISGLIYEETRGVL 59
Query: 56 EYLAAEVLELAGNAARDNKKTRIIPRHLQLAIR 88
+ V+ A K+ + + A++
Sbjct: 60 KVFLENVIRDAVTYTEHAKRKTVTAMDVVYALK 92
>2l5a_A Histone H3-like centromeric protein CSE4, protein histone H4; A
single chain of CSE4+SCM3+H4, fusion protein; NMR
{Saccharomyces cerevisiae}
Length = 235
Score = 26.9 bits (58), Expect = 0.89
Identities = 14/73 (19%), Positives = 25/73 (34%)
Query: 20 RAGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRII 79
+ V + + R + A + L E +LE A K+ I+
Sbjct: 14 KIPFARLVKEVTDEFTTKDQDLRWQSMAIMALQEASEAYLVGLLEHTNLLALHAKRITIM 73
Query: 80 PRHLQLAIRNDEE 92
+ +QLA R +
Sbjct: 74 KKDMQLARRIRGQ 86
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 27.3 bits (60), Expect = 0.95
Identities = 18/109 (16%), Positives = 24/109 (22%), Gaps = 47/109 (43%)
Query: 9 KAKAKSKTRSSRA---------GLQF-PVGRIHRLLRKGNYAERVGAGAPV---YLA--- 52
KAKA S SR +F PV +P L
Sbjct: 395 KAKAPSGLDQSRIPFSERKLKFSNRFLPV------------------ASPFHSHLLVPAS 436
Query: 53 -AVMEYLAAEVLELAGNA----------ARD--NKKTRIIPRHLQLAIR 88
+ + L + D I R + IR
Sbjct: 437 DLINKDLVKNNVSFNAKDIQIPVYDTFDGSDLRVLSGSISERIVDCIIR 485
Score = 25.4 bits (55), Expect = 3.5
Identities = 21/102 (20%), Positives = 33/102 (32%), Gaps = 14/102 (13%)
Query: 4 RGK--GGKAKAKSKTRSSRAGLQFPVGRIHRLLRK---GNYAERVGAGAPVYLAAV---- 54
RG RS+ + GR+ + ERVG + V
Sbjct: 1789 RGMTMQVAVPRDELGRSNYGMIAINPGRVAASFSQEALQYVVERVGKRTGWLVEIVNYNV 1848
Query: 55 --MEYLAA---EVLELAGNAARDNKKTRIIPRHLQLAIRNDE 91
+Y+AA L+ N K +I LQ ++ +E
Sbjct: 1849 ENQQYVAAGDLRALDTVTNVLNFIKLQKIDIIELQKSLSLEE 1890
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB,
proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR
binding; 6.93A {Bacillus subtilis}
Length = 758
Score = 26.4 bits (59), Expect = 1.4
Identities = 9/34 (26%), Positives = 18/34 (52%)
Query: 59 AAEVLELAGNAARDNKKTRIIPRHLQLAIRNDEE 92
A +V+EL+ + AR + + H+ L + + E
Sbjct: 84 AKKVIELSMDEARKLGHSYVGTEHILLGLIREGE 117
Score = 24.1 bits (53), Expect = 9.1
Identities = 10/34 (29%), Positives = 14/34 (41%)
Query: 59 AAEVLELAGNAARDNKKTRIIPRHLQLAIRNDEE 92
A +VL LA A I H+ L + + E
Sbjct: 10 AQKVLALAQEEALRLGHNNIGTEHILLGLVREGE 43
>2y1q_A CLPC N-domain, negative regulator of genetic competence CLPC/MEC;
transcription, proteolysis; 1.50A {Bacillus subtilis}
PDB: 2y1r_A* 2k77_A
Length = 150
Score = 25.7 bits (57), Expect = 2.0
Identities = 9/34 (26%), Positives = 18/34 (52%)
Query: 59 AAEVLELAGNAARDNKKTRIIPRHLQLAIRNDEE 92
A +V+EL+ + AR + + H+ L + + E
Sbjct: 84 AKKVIELSMDEARKLGHSYVGTEHILLGLIREGE 117
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB,
proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR
binding; 3.65A {Bacillus subtilis}
Length = 468
Score = 26.0 bits (58), Expect = 2.4
Identities = 9/34 (26%), Positives = 18/34 (52%)
Query: 59 AAEVLELAGNAARDNKKTRIIPRHLQLAIRNDEE 92
A +V+EL+ + AR + + H+ L + + E
Sbjct: 84 AKKVIELSMDEARKLGHSYVGTEHILLGLIREGE 117
Score = 24.5 bits (54), Expect = 6.8
Identities = 10/34 (29%), Positives = 14/34 (41%)
Query: 59 AAEVLELAGNAARDNKKTRIIPRHLQLAIRNDEE 92
A +VL LA A I H+ L + + E
Sbjct: 10 AQKVLALAQEEALRLGHNNIGTEHILLGLVREGE 43
>2qgg_A 16S rRNA-processing protein RIMM; X-RAY, NESG, ASR73, structural
genomics, PSI-2, protein structure initiative; 2.40A
{Acinetobacter calcoaceticus}
Length = 182
Score = 25.3 bits (56), Expect = 3.5
Identities = 6/30 (20%), Positives = 14/30 (46%)
Query: 51 LAAVMEYLAAEVLELAGNAARDNKKTRIIP 80
+ + E A +V+ + + + R+IP
Sbjct: 129 IHELFETGANDVMVVRATPDSIDSEERMIP 158
>2f1l_A 16S rRNA processing protein; structural genomics, joint CENT
structural genomics, JCSG, protein structure initiative,
PS unknown function; HET: UNL; 2.46A {Pseudomonas
aeruginosa} SCOP: b.41.1.4 b.43.3.4
Length = 187
Score = 24.5 bits (54), Expect = 6.9
Identities = 6/30 (20%), Positives = 16/30 (53%)
Query: 51 LAAVMEYLAAEVLELAGNAARDNKKTRIIP 80
+ ++E A +V+ + A + + R++P
Sbjct: 134 IDHLLETGANDVMVVKPCAGSLDDRERLLP 163
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding
mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli}
SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Length = 758
Score = 24.5 bits (54), Expect = 7.0
Identities = 6/34 (17%), Positives = 17/34 (50%)
Query: 59 AAEVLELAGNAARDNKKTRIIPRHLQLAIRNDEE 92
VL+ A + + + + ++ +AI +++E
Sbjct: 84 FQRVLQRAVFHVQSSGRNEVTGANVLVAIFSEQE 117
>1id3_B Histone H4; nucleosome core particle, chromatin, protein/DNA
interaction, nucleoprotein, supercoiled DNA; 3.10A
{Saccharomyces cerevisiae} SCOP: a.22.1.1
Length = 102
Score = 23.9 bits (51), Expect = 7.4
Identities = 22/92 (23%), Positives = 37/92 (40%), Gaps = 6/92 (6%)
Query: 2 SGRGKGGKAKAKSKTRSSRAGLQ-----FPVGRIHRLLRKGNYAERVGAGAPVYLAAVME 56
SGRGKGGK K + R L+ I RL R+G +R+ + AV++
Sbjct: 1 SGRGKGGKGLGKGGAKRHRKILRDNIQGITKPAIRRLARRGG-VKRISGLIYEEVRAVLK 59
Query: 57 YLAAEVLELAGNAARDNKKTRIIPRHLQLAIR 88
V+ + K+ + + A++
Sbjct: 60 SFLESVIRDSVTYTEHAKRKTVTSLDVVYALK 91
>3c4z_A Rhodopsin kinase; Ser/Thr kinase, RGS homology domain, G protein
coupled recep kinase, GRK, GRK1, P-loop, autophosphoryl
ADP, ATP-binding; HET: ADP; 1.84A {Bos taurus} PDB:
3c4x_A* 3c4y_A 3c4w_A* 3c50_A* 3c51_A* 3qc9_A* 2i94_B
Length = 543
Score = 24.4 bits (53), Expect = 7.4
Identities = 7/36 (19%), Positives = 12/36 (33%)
Query: 1 MSGRGKGGKAKAKSKTRSSRAGLQFPVGRIHRLLRK 36
+ + S+ R A L+ P LR+
Sbjct: 17 AARGSFDASSGPASRDRKYLARLKLPPLSKCEALRE 52
>3fh2_A Probable ATP-dependent protease (heat shock prote; struct genomics,
PSI2, MCSG, protein structure initiative; 1.60A
{Corynebacterium glutamicum}
Length = 146
Score = 24.2 bits (53), Expect = 7.4
Identities = 9/34 (26%), Positives = 13/34 (38%)
Query: 59 AAEVLELAGNAARDNKKTRIIPRHLQLAIRNDEE 92
A +VLEL+ I L L + + E
Sbjct: 86 AKKVLELSLREGLQMGHKYIGTEFLLLGLIREGE 119
>3qec_A Putative carbohydrate binding protein; suramin binding, heparin
binding, possible carbohydrate TRAN biofilm formation;
HET: PGE; 2.61A {Pseudomonas aeruginosa}
Length = 150
Score = 24.1 bits (51), Expect = 9.7
Identities = 9/47 (19%), Positives = 13/47 (27%)
Query: 34 LRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIP 80
L + A + G V L Y+ A + A P
Sbjct: 32 LTSASGAIQKGTNTKVALEPATSYMKAYYAKFGNLDAAKRDPDVQPP 78
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.317 0.133 0.366
Gapped
Lambda K H
0.267 0.0606 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,467,735
Number of extensions: 83635
Number of successful extensions: 202
Number of sequences better than 10.0: 1
Number of HSP's gapped: 196
Number of HSP's successfully gapped: 43
Length of query: 96
Length of database: 6,701,793
Length adjustment: 62
Effective length of query: 34
Effective length of database: 4,970,691
Effective search space: 169003494
Effective search space used: 169003494
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 51 (23.7 bits)