RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy15119
(96 letters)
>d1tzya_ a.22.1.1 (A:) Histone H2A {Chicken (Gallus gallus),
erythrocytes [TaxId: 9031]}
Length = 106
Score = 141 bits (358), Expect = 3e-46
Identities = 78/84 (92%), Positives = 83/84 (98%)
Query: 13 KSKTRSSRAGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARD 72
K+K+RSSRAGLQFPVGR+HRLLRKGNYAERVGAGAPVYLAAV+EYL AE+LELAGNAARD
Sbjct: 1 KAKSRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPVYLAAVLEYLTAEILELAGNAARD 60
Query: 73 NKKTRIIPRHLQLAIRNDEELNKL 96
NKKTRIIPRHLQLAIRNDEELNKL
Sbjct: 61 NKKTRIIPRHLQLAIRNDEELNKL 84
>d1u35c1 a.22.1.1 (C:814-919) macro-H2A.1, histone domain {Human
(Homo sapiens) [TaxId: 9606]}
Length = 106
Score = 138 bits (349), Expect = 5e-45
Identities = 52/82 (63%), Positives = 68/82 (82%)
Query: 15 KTRSSRAGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNK 74
+RS++AG+ FPVGR+ R ++KG+ R+G GAPVY+AAV+EYL AE+LELA NAARDNK
Sbjct: 2 TSRSAKAGVIFPVGRMLRYIKKGHPKYRIGVGAPVYMAAVLEYLTAEILELAVNAARDNK 61
Query: 75 KTRIIPRHLQLAIRNDEELNKL 96
K R+ PRH+ LA+ NDEELN+L
Sbjct: 62 KGRVTPRHILLAVANDEELNQL 83
>d1q9ca_ a.22.1.3 (A:) Histone domain of Son of sevenless protein
{Human (Homo sapiens) [TaxId: 9606]}
Length = 172
Score = 139 bits (351), Expect = 3e-44
Identities = 27/94 (28%), Positives = 52/94 (55%), Gaps = 1/94 (1%)
Query: 3 GRGKGGKAKAKSKTRSSRAGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEV 62
+ A++ + R R L PV +IH LL++ ++ VY+ AV+EY++A++
Sbjct: 78 DKWAIADAQSAIEKRKRRNPLSLPVEKIHPLLKEV-LGYKIDHQVSVYIVAVLEYISADI 136
Query: 63 LELAGNAARDNKKTRIIPRHLQLAIRNDEELNKL 96
L+LAGN R+ + I + +++A+ D+ L +
Sbjct: 137 LKLAGNYVRNIRHYEITKQDIKVAMCADKVLMDM 170
>d1f66c_ a.22.1.1 (C:) Histone H2A {Human (Homo sapiens), variant
H2A.Z [TaxId: 9606]}
Length = 103
Score = 124 bits (314), Expect = 1e-39
Identities = 56/84 (66%), Positives = 65/84 (77%), Gaps = 1/84 (1%)
Query: 14 SKTRSSRAGLQFPVGRIHRLLRKGNYAE-RVGAGAPVYLAAVMEYLAAEVLELAGNAARD 72
+ +RS RAGLQFPVGRIHR L+ + RVGA A VY AA++EYL AEVLELAGNA++D
Sbjct: 1 AVSRSQRAGLQFPVGRIHRHLKSRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKD 60
Query: 73 NKKTRIIPRHLQLAIRNDEELNKL 96
K RI PRHLQLAIR DEEL+ L
Sbjct: 61 LKVKRITPRHLQLAIRGDEELDSL 84
>d1jfia_ a.22.1.3 (A:) Negative cofactor 2, NC2, alpha chain
{Human (Homo sapiens) [TaxId: 9606]}
Length = 66
Score = 82.9 bits (205), Expect = 2e-23
Identities = 14/64 (21%), Positives = 28/64 (43%)
Query: 24 QFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHL 83
+FP RI ++++ +V A PV ++ +E +L+ A + + HL
Sbjct: 2 RFPPARIKKIMQTDEEIGKVAAAVPVIISRALELFLESLLKKACQVTQSRNAKTMTTSHL 61
Query: 84 QLAI 87
+ I
Sbjct: 62 KQCI 65
>d1n1jb_ a.22.1.3 (B:) Nuclear transcription factor Y subunit
gamma (Nf-Yc2) {Human (Homo sapiens) [TaxId: 9606]}
Length = 78
Score = 76.8 bits (189), Expect = 5e-21
Identities = 16/71 (22%), Positives = 32/71 (45%)
Query: 26 PVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQL 85
P+ RI ++++ + + A APV A + E+ A DNK+ + + +
Sbjct: 2 PLARIKKIMKLDEDVKMISAEAPVLFAKAAQIFITELTLRAWIHTEDNKRRTLQRNDIAM 61
Query: 86 AIRNDEELNKL 96
AI ++ + L
Sbjct: 62 AITKFDQFDFL 72
>d1f1ea_ a.22.1.2 (A:) Archaeal histone {Archaeon Methanopyrus
kandleri [TaxId: 2320]}
Length = 151
Score = 61.0 bits (148), Expect = 6e-14
Identities = 13/76 (17%), Positives = 28/76 (36%), Gaps = 1/76 (1%)
Query: 14 SKTRSSRAGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDN 73
+ G F + R+L++ ER + A ++ E+ E A A ++
Sbjct: 69 VEGVEDYDGELFGRATVRRILKRAG-IERASSDAVDLYNKLICRATEELGEKAAEYADED 127
Query: 74 KKTRIIPRHLQLAIRN 89
+ + ++ AI
Sbjct: 128 GRKTVQGEDVEKAITY 143
Score = 53.3 bits (128), Expect = 5e-11
Identities = 13/65 (20%), Positives = 25/65 (38%)
Query: 24 QFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHL 83
+ P I R+ R+G R+ A + + +A V A + + K ++ HL
Sbjct: 1 ELPKAAIERIFRQGIGERRLSQDAKDTIYDFVPTMAEYVANAAKSVLDASGKKTLMEEHL 60
Query: 84 QLAIR 88
+
Sbjct: 61 KALAD 65
>d1n1ja_ a.22.1.3 (A:) Nuclear transcription factor Y subunit beta
(Nf-Yb3) {Human (Homo sapiens) [TaxId: 9606]}
Length = 87
Score = 30.6 bits (69), Expect = 0.008
Identities = 7/73 (9%), Positives = 23/73 (31%), Gaps = 1/73 (1%)
Query: 23 LQFPVGRIHRLLRKG-NYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPR 81
+ P+ + R+++ ++ A + + + + A K+ I
Sbjct: 1 IYLPIANVARIMKNAIPQTGKIAKDAKECVQECVSEFISFITSEASERCHQEKRKTINGE 60
Query: 82 HLQLAIRNDEELN 94
+ A+ +
Sbjct: 61 DILFAMSTLGFDS 73
>d2f1la1 b.41.1.4 (A:101-175) 16S rRNA processing protein RimM,
C-terminal domain {Pseudomonas aeruginosa [TaxId: 287]}
Length = 75
Score = 27.3 bits (61), Expect = 0.12
Identities = 6/28 (21%), Positives = 15/28 (53%)
Query: 53 AVMEYLAAEVLELAGNAARDNKKTRIIP 80
++E A +V+ + A + + R++P
Sbjct: 24 HLLETGANDVMVVKPCAGSLDDRERLLP 51
>d1khya_ a.174.1.1 (A:) N-terminal domain of ClpB (heat shock
protein F84.1) {Escherichia coli [TaxId: 562]}
Length = 139
Score = 26.2 bits (57), Expect = 0.52
Identities = 10/34 (29%), Positives = 13/34 (38%)
Query: 59 AAEVLELAGNAARDNKKTRIIPRHLQLAIRNDEE 92
L A + A + I P HL A+ N E
Sbjct: 7 FQLALADAQSLALGHDNQFIEPLHLMSALLNQEG 40
>d1qvra1 a.174.1.1 (A:4-148) N-terminal domain of ClpB (heat shock
protein F84.1) {Thermus thermophilus [TaxId: 274]}
Length = 145
Score = 23.5 bits (50), Expect = 4.4
Identities = 11/34 (32%), Positives = 13/34 (38%)
Query: 59 AAEVLELAGNAARDNKKTRIIPRHLQLAIRNDEE 92
A E L A A+ K I HL + DE
Sbjct: 7 AREALAQAQVLAQRMKHQAIDLPHLWAVLLKDER 40
>d1d1na_ b.43.3.1 (A:) Initiation factor IF2/eIF5b, domains 2 and
4 {Bacillus stearothermophilus [TaxId: 1422]}
Length = 99
Score = 23.1 bits (50), Expect = 4.9
Identities = 13/39 (33%), Positives = 15/39 (38%)
Query: 8 GKAKAKSKTRSSRAGLQFPVGRIHRLLRKGNYAERVGAG 46
GK SK R R G+ G I L R + V G
Sbjct: 31 GKITRDSKVRLIRQGIVVYEGEIDSLKRYKDDVREVAQG 69
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.317 0.133 0.366
Gapped
Lambda K H
0.267 0.0704 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 329,280
Number of extensions: 13041
Number of successful extensions: 37
Number of sequences better than 10.0: 1
Number of HSP's gapped: 34
Number of HSP's successfully gapped: 16
Length of query: 96
Length of database: 2,407,596
Length adjustment: 59
Effective length of query: 37
Effective length of database: 1,597,526
Effective search space: 59108462
Effective search space used: 59108462
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 47 (21.9 bits)