BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy1512
(679 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3ETQ|A Chain A, X-Ray Structure Of Cysteine-Free Fragment Of Mhcn2 C-
Terminal Region From Amino Acids 443-630 Including
C508n, C584s, And C601s Mutations
pdb|3ETQ|B Chain B, X-Ray Structure Of Cysteine-Free Fragment Of Mhcn2 C-
Terminal Region From Amino Acids 443-630 Including
C508n, C584s, And C601s Mutations
Length = 204
Score = 59.3 bits (142), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 55/244 (22%), Positives = 93/244 (38%), Gaps = 91/244 (37%)
Query: 333 SAARKEFQAKLDGVKTYMRMRRVPNALQVKVIKWFDYLWLTQKCSDEEKAVSCLPGPGSS 392
++R+++Q K V+ YM ++P + K+ ++++ + K DE+ + L GP
Sbjct: 7 DSSRRQYQEKYKQVEQYMSFHKLPADFRQKIHDYYEHRY-QGKMFDEDSILGELNGPLR- 64
Query: 393 STKLVHGGQYELEEIAIVSNQATPNQVKYGSGPLYMSANGPKVVPDKLKAEIAINVHLDT 452
EEI +N+ KL A + +
Sbjct: 65 ------------EEIVNFNNR-------------------------KLVASMPL------ 81
Query: 453 LKRVEIFQNTEAGFLCELVLRLRPVLFSPGDYICRKGN---------------------- 490
F N + F+ ++ +L+ +F PGDYI R+G
Sbjct: 82 ------FANADPNFVTAMLTKLKFEVFQPGDYIIREGTIGKKMYFIQHGVVSVLTKGNKE 135
Query: 491 ------------------RRTASVRSVGYSDLFVLSKTDMWDVLKEYPAARVRLESIAVK 532
RRTASVR+ YS L+ LS + +VL+EYP R E++A+
Sbjct: 136 MKLSDGSYFGEISLLTRGRRTASVRADTYSRLYSLSVDNFNEVLEEYPMMRRAFETVAID 195
Query: 533 RLQK 536
RL +
Sbjct: 196 RLDR 199
Score = 38.9 bits (89), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 28/47 (59%), Gaps = 2/47 (4%)
Query: 606 LEKGEVGKEMYIVNRGRLQVVADNGKTVLATLRAGSYFGEISILNMG 652
+ +G +GK+MY + G + V+ K + L GSYFGEIS+L G
Sbjct: 109 IREGTIGKKMYFIQHGVVSVLTKGNKEM--KLSDGSYFGEISLLTRG 153
>pdb|1Q3E|A Chain A, Hcn2j 443-645 In The Presence Of Cgmp
pdb|1Q3E|B Chain B, Hcn2j 443-645 In The Presence Of Cgmp
Length = 207
Score = 55.8 bits (133), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 52/248 (20%), Positives = 94/248 (37%), Gaps = 93/248 (37%)
Query: 330 TSVSAARKEFQAKLDGVKTYMRMRRVPNALQVKVIKWFDYLWLTQKCSDEEKAVSCLPGP 389
+++ ++R+++Q K V+ YM ++P + K+ ++++ + K DE+ + L GP
Sbjct: 2 SAMDSSRRQYQEKYKQVEQYMSFHKLPADFRQKIHDYYEHRY-QGKMFDEDSILGELNGP 60
Query: 390 GSSSTKLVHGGQYELEEIAIVSNQATPNQVKYGSGPLYMSANGPKVVPDKLKAEIAINVH 449
L+ EI +N +
Sbjct: 61 --------------------------------------------------LREEI-VNFN 69
Query: 450 LDTL-KRVEIFQNTEAGFLCELVLRLRPVLFSPGDYICRKGN------------------ 490
L + +F N + F+ ++ +L+ +F PGDYI R+G
Sbjct: 70 CRKLVASMPLFANADPNFVTAMLTKLKFEVFQPGDYIIREGTIGKKMYFIQHGVVSVLTK 129
Query: 491 ----------------------RRTASVRSVGYSDLFVLSKTDMWDVLKEYPAARVRLES 528
RRTASVR+ Y L+ LS + +VL+EYP R E+
Sbjct: 130 GNKEMKLSDGSYFGEICLLTRGRRTASVRADTYCRLYSLSVDNFNEVLEEYPMMRRAFET 189
Query: 529 IAVKRLQK 536
+A+ RL +
Sbjct: 190 VAIDRLDR 197
Score = 37.4 bits (85), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 27/47 (57%), Gaps = 2/47 (4%)
Query: 606 LEKGEVGKEMYIVNRGRLQVVADNGKTVLATLRAGSYFGEISILNMG 652
+ +G +GK+MY + G + V+ K + L GSYFGEI +L G
Sbjct: 107 IREGTIGKKMYFIQHGVVSVLTKGNKEM--KLSDGSYFGEICLLTRG 151
>pdb|3FFQ|A Chain A, Hcn2i 443-640 Apo-State
pdb|3FFQ|B Chain B, Hcn2i 443-640 Apo-State
Length = 202
Score = 55.8 bits (133), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 52/248 (20%), Positives = 94/248 (37%), Gaps = 93/248 (37%)
Query: 330 TSVSAARKEFQAKLDGVKTYMRMRRVPNALQVKVIKWFDYLWLTQKCSDEEKAVSCLPGP 389
+++ ++R+++Q K V+ YM ++P + K+ ++++ + K DE+ + L GP
Sbjct: 2 SAMDSSRRQYQEKYKQVEQYMSFHKLPADFRQKIHDYYEHRY-QGKMFDEDSILGELNGP 60
Query: 390 GSSSTKLVHGGQYELEEIAIVSNQATPNQVKYGSGPLYMSANGPKVVPDKLKAEIAINVH 449
L+ EI +N +
Sbjct: 61 --------------------------------------------------LREEI-VNFN 69
Query: 450 LDTL-KRVEIFQNTEAGFLCELVLRLRPVLFSPGDYICRKGN------------------ 490
L + +F N + F+ ++ +L+ +F PGDYI R+G
Sbjct: 70 CRKLVASMPLFANADPNFVTAMLTKLKFEVFQPGDYIIREGTIGKKMYFIQHGVVSVLTK 129
Query: 491 ----------------------RRTASVRSVGYSDLFVLSKTDMWDVLKEYPAARVRLES 528
RRTASVR+ Y L+ LS + +VL+EYP R E+
Sbjct: 130 GNKEMKLSDGSYFGEICLLTRGRRTASVRADTYCRLYSLSVDNFNEVLEEYPMMRRAFET 189
Query: 529 IAVKRLQK 536
+A+ RL +
Sbjct: 190 VAIDRLDR 197
Score = 37.4 bits (85), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 27/47 (57%), Gaps = 2/47 (4%)
Query: 606 LEKGEVGKEMYIVNRGRLQVVADNGKTVLATLRAGSYFGEISILNMG 652
+ +G +GK+MY + G + V+ K + L GSYFGEI +L G
Sbjct: 107 IREGTIGKKMYFIQHGVVSVLTKGNKEM--KLSDGSYFGEICLLTRG 151
>pdb|3U10|A Chain A, Tetramerization Dynamics Of The C-Terminus Underlies
Isoform-Specific Camp-Gating In Hcn Channels
Length = 210
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 52/248 (20%), Positives = 93/248 (37%), Gaps = 93/248 (37%)
Query: 330 TSVSAARKEFQAKLDGVKTYMRMRRVPNALQVKVIKWFDYLWLTQKCSDEEKAVSCLPGP 389
+ + ++R+++Q K V+ YM ++P + K+ ++++ + K DE+ + L GP
Sbjct: 5 SPMDSSRRQYQEKYKQVEQYMSFHKLPADFRQKIHDYYEHRY-QGKMFDEDSILGELNGP 63
Query: 390 GSSSTKLVHGGQYELEEIAIVSNQATPNQVKYGSGPLYMSANGPKVVPDKLKAEIAINVH 449
L+ EI +N +
Sbjct: 64 --------------------------------------------------LREEI-VNFN 72
Query: 450 LDTL-KRVEIFQNTEAGFLCELVLRLRPVLFSPGDYICRKGN------------------ 490
L + +F N + F+ ++ +L+ +F PGDYI R+G
Sbjct: 73 CRKLVASMPLFANADPNFVTAMLTKLKFEVFQPGDYIIREGTIGKKMYFIQHGVVSVLTK 132
Query: 491 ----------------------RRTASVRSVGYSDLFVLSKTDMWDVLKEYPAARVRLES 528
RRTASVR+ Y L+ LS + +VL+EYP R E+
Sbjct: 133 GNKEMKLSDGSYFGEICLLTRGRRTASVRADTYCRLYSLSVDNFNEVLEEYPMMRRAFET 192
Query: 529 IAVKRLQK 536
+A+ RL +
Sbjct: 193 VAIDRLDR 200
Score = 37.4 bits (85), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 27/47 (57%), Gaps = 2/47 (4%)
Query: 606 LEKGEVGKEMYIVNRGRLQVVADNGKTVLATLRAGSYFGEISILNMG 652
+ +G +GK+MY + G + V+ K + L GSYFGEI +L G
Sbjct: 110 IREGTIGKKMYFIQHGVVSVLTKGNKEM--KLSDGSYFGEICLLTRG 154
>pdb|3U0Z|A Chain A, Tetramerization Dynamics Of The C-Terminus Underlies
Isoform-Specific Camp-Gating In Hcn Channels
pdb|3U0Z|B Chain B, Tetramerization Dynamics Of The C-Terminus Underlies
Isoform-Specific Camp-Gating In Hcn Channels
Length = 210
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 42/155 (27%), Positives = 66/155 (42%), Gaps = 42/155 (27%)
Query: 423 SGPLYMSANGPKVVPDKLKAEIAINVHLDTL-KRVEIFQNTEAGFLCELVLRLRPVLFSP 481
G ++ N + D L+ EI +N + L + +F N + F+ ++ +LR +F P
Sbjct: 47 QGKIFDEENILSELNDPLREEI-VNFNCRKLVATMPLFANADPNFVTAMLSKLRFEVFQP 105
Query: 482 GDYICRKG----------------------------------------NRRTASVRSVGY 501
GDYI R+G RRTASVR+ Y
Sbjct: 106 GDYIIREGAVGKKMYFIQHGVAGVITKSSKEMKLTDGSYFGEICLLTKGRRTASVRADTY 165
Query: 502 SDLFVLSKTDMWDVLKEYPAARVRLESIAVKRLQK 536
L+ LS + +VL+EYP R E++A+ RL +
Sbjct: 166 CRLYSLSVDNFNEVLEEYPMMRRAFETVAIDRLDR 200
Score = 37.4 bits (85), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 27/47 (57%), Gaps = 2/47 (4%)
Query: 606 LEKGEVGKEMYIVNRGRLQVVADNGKTVLATLRAGSYFGEISILNMG 652
+ +G VGK+MY + G V+ + K + L GSYFGEI +L G
Sbjct: 110 IREGAVGKKMYFIQHGVAGVITKSSKEM--KLTDGSYFGEICLLTKG 154
>pdb|2Q0A|A Chain A, Structure And Rearrangements In The Carboxy-Terminal
Region Of Spih Channels
pdb|2Q0A|B Chain B, Structure And Rearrangements In The Carboxy-Terminal
Region Of Spih Channels
Length = 200
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 52/245 (21%), Positives = 91/245 (37%), Gaps = 93/245 (37%)
Query: 333 SAARKEFQAKLDGVKTYMRMRRVPNALQVKVIKWFDYLWLTQKCSDEEKAVSCLPGPGSS 392
++R+++Q K V+ YM ++P + K+ ++++ + K DE+ + L GP
Sbjct: 3 DSSRRQYQEKYKQVEQYMSFHKLPADFRQKIHDYYEHRY-QGKMFDEDSILGELNGP--- 58
Query: 393 STKLVHGGQYELEEIAIVSNQATPNQVKYGSGPLYMSANGPKVVPDKLKAEIAINVHLDT 452
L+ EI +N +
Sbjct: 59 -----------------------------------------------LREEI-VNFNCRK 70
Query: 453 L-KRVEIFQNTEAGFLCELVLRLRPVLFSPGDYICRKGN--------------------- 490
L + +F N + F+ ++ +L+ +F PGDYI R+G
Sbjct: 71 LVASMPLFANADPNFVTAMLTKLKFEVFQPGDYIIREGTIGKKMYFIQHGVVSVLTKGNK 130
Query: 491 -------------------RRTASVRSVGYSDLFVLSKTDMWDVLKEYPAARVRLESIAV 531
RRTASVR+ Y L+ LS + +VL+EYP R E++A+
Sbjct: 131 EMKLSDGSYFGEICLLTRGRRTASVRADTYCRLYSLSVDNFNEVLEEYPMMRRAFETVAI 190
Query: 532 KRLQK 536
RL +
Sbjct: 191 DRLDR 195
Score = 37.0 bits (84), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 27/47 (57%), Gaps = 2/47 (4%)
Query: 606 LEKGEVGKEMYIVNRGRLQVVADNGKTVLATLRAGSYFGEISILNMG 652
+ +G +GK+MY + G + V+ K + L GSYFGEI +L G
Sbjct: 105 IREGTIGKKMYFIQHGVVSVLTKGNKEM--KLSDGSYFGEICLLTRG 149
>pdb|3U11|A Chain A, Tetramerization Dynamics Of The C-Terminus Underlies
Isoform-Specific Camp-Gating In Hcn Channels
pdb|3U11|B Chain B, Tetramerization Dynamics Of The C-Terminus Underlies
Isoform-Specific Camp-Gating In Hcn Channels
Length = 210
Score = 53.5 bits (127), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 53/248 (21%), Positives = 92/248 (37%), Gaps = 93/248 (37%)
Query: 330 TSVSAARKEFQAKLDGVKTYMRMRRVPNALQVKVIKWFDYLWLTQKCSDEEKAVSCLPGP 389
+ + ++R+++Q K V+ YM ++P + ++ ++++ + K DEE + L P
Sbjct: 5 SPMDSSRRQYQEKYKQVEQYMSFHKLPPDTRQRIHDYYEHRY-QGKMFDEESILGELSEP 63
Query: 390 GSSSTKLVHGGQYELEEIAIVSNQATPNQVKYGSGPLYMSANGPKVVPDKLKAEIAINVH 449
L+ EI IN +
Sbjct: 64 --------------------------------------------------LREEI-INFN 72
Query: 450 LDTL-KRVEIFQNTEAGFLCELVLRLRPVLFSPGDYICRKGN------------------ 490
L + +F N + F+ ++ +LR +F PGDYI R+G
Sbjct: 73 XRKLVASMPLFANADPNFVTSMLTKLRFEVFQPGDYIIREGTIGKKMYFIQHGVVSVLTK 132
Query: 491 ----------------------RRTASVRSVGYSDLFVLSKTDMWDVLKEYPAARVRLES 528
RRTASVR+ Y L+ LS + +VL+EYP R E+
Sbjct: 133 GNKETKLADGSYFGEICLLTRGRRTASVRADTYCRLYSLSVDNFNEVLEEYPMMRRAFET 192
Query: 529 IAVKRLQK 536
+A+ RL +
Sbjct: 193 VALDRLDR 200
Score = 36.6 bits (83), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 26/47 (55%), Gaps = 2/47 (4%)
Query: 606 LEKGEVGKEMYIVNRGRLQVVADNGKTVLATLRAGSYFGEISILNMG 652
+ +G +GK+MY + G + V+ K L GSYFGEI +L G
Sbjct: 110 IREGTIGKKMYFIQHGVVSVLTKGNKE--TKLADGSYFGEICLLTRG 154
>pdb|3OTF|A Chain A, Structural Basis For The Camp-Dependent Gating In Human
Hcn4 Channel
Length = 220
Score = 53.1 bits (126), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 34/119 (28%), Positives = 51/119 (42%), Gaps = 40/119 (33%)
Query: 458 IFQNTEAGFLCELVLRLRPVLFSPGDYICRKGN--------------------------- 490
+F N + F+ ++ +LR +F PGDYI R+G
Sbjct: 76 LFANADPNFVTSMLTKLRFEVFQPGDYIIREGTIGKKMYFIQHGVVSVLTKGNKETKLAD 135
Query: 491 -------------RRTASVRSVGYSDLFVLSKTDMWDVLKEYPAARVRLESIAVKRLQK 536
RRTASVR+ Y L+ LS + +VL+EYP R E++A+ RL +
Sbjct: 136 GSYFGEICLLTRGRRTASVRADTYCRLYSLSVDNFNEVLEEYPMMRRAFETVALDRLDR 194
Score = 37.0 bits (84), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 26/47 (55%), Gaps = 2/47 (4%)
Query: 606 LEKGEVGKEMYIVNRGRLQVVADNGKTVLATLRAGSYFGEISILNMG 652
+ +G +GK+MY + G + V+ K L GSYFGEI +L G
Sbjct: 104 IREGTIGKKMYFIQHGVVSVLTKGNKE--TKLADGSYFGEICLLTRG 148
>pdb|3BPZ|A Chain A, Hcn2-I 443-460 E502k In The Presence Of Camp
pdb|3BPZ|B Chain B, Hcn2-I 443-460 E502k In The Presence Of Camp
pdb|3BPZ|C Chain C, Hcn2-I 443-460 E502k In The Presence Of Camp
pdb|3BPZ|D Chain D, Hcn2-I 443-460 E502k In The Presence Of Camp
Length = 202
Score = 52.4 bits (124), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 52/248 (20%), Positives = 95/248 (38%), Gaps = 93/248 (37%)
Query: 330 TSVSAARKEFQAKLDGVKTYMRMRRVPNALQVKVIKWFDYLWLTQKCSDEEKAVSCLPGP 389
+++ ++R+++Q K V+ YM ++P + K+ ++++ + K DE+ + L
Sbjct: 2 SAMDSSRRQYQEKYKQVEQYMSFHKLPADFRQKIHDYYEHRY-QGKMFDEDSILGEL--- 57
Query: 390 GSSSTKLVHGGQYELEEIAIVSNQATPNQVKYGSGPLYMSANGPKVVPDKLKAEIAINVH 449
NGP L+ +I +N +
Sbjct: 58 -----------------------------------------NGP------LREKI-VNFN 69
Query: 450 LDTL-KRVEIFQNTEAGFLCELVLRLRPVLFSPGDYICRKGN------------------ 490
L + +F N + F+ ++ +L+ +F PGDYI R+G
Sbjct: 70 CRKLVASMPLFANADPNFVTAMLTKLKFEVFQPGDYIIREGTIGKKMYFIQHGVVSVLTK 129
Query: 491 ----------------------RRTASVRSVGYSDLFVLSKTDMWDVLKEYPAARVRLES 528
RRTASVR+ Y L+ LS + +VL+EYP R E+
Sbjct: 130 GNKEMKLSDGSYFGEICLLTRGRRTASVRADTYCRLYSLSVDNFNEVLEEYPMMRRAFET 189
Query: 529 IAVKRLQK 536
+A+ RL +
Sbjct: 190 VAIDRLDR 197
Score = 37.0 bits (84), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 27/47 (57%), Gaps = 2/47 (4%)
Query: 606 LEKGEVGKEMYIVNRGRLQVVADNGKTVLATLRAGSYFGEISILNMG 652
+ +G +GK+MY + G + V+ K + L GSYFGEI +L G
Sbjct: 107 IREGTIGKKMYFIQHGVVSVLTKGNKEM--KLSDGSYFGEICLLTRG 151
>pdb|1Q43|A Chain A, Hcn2i 443-640 In The Presence Of Camp, Selenomethionine
Derivative
pdb|1Q43|B Chain B, Hcn2i 443-640 In The Presence Of Camp, Selenomethionine
Derivative
pdb|1Q5O|A Chain A, Hcn2j 443-645 In The Presence Of Camp, Selenomethionine
Derivative
Length = 207
Score = 50.8 bits (120), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 33/119 (27%), Positives = 50/119 (42%), Gaps = 40/119 (33%)
Query: 458 IFQNTEAGFLCELVLRLRPVLFSPGDYICRKGN--------------------------- 490
+F N + F+ + +L+ +F PGDYI R+G
Sbjct: 79 LFANADPNFVTAXLTKLKFEVFQPGDYIIREGTIGKKXYFIQHGVVSVLTKGNKEXKLSD 138
Query: 491 -------------RRTASVRSVGYSDLFVLSKTDMWDVLKEYPAARVRLESIAVKRLQK 536
RRTASVR+ Y L+ LS + +VL+EYP R E++A+ RL +
Sbjct: 139 GSYFGEICLLTRGRRTASVRADTYCRLYSLSVDNFNEVLEEYPXXRRAFETVAIDRLDR 197
Score = 34.3 bits (77), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 25/47 (53%), Gaps = 2/47 (4%)
Query: 606 LEKGEVGKEMYIVNRGRLQVVADNGKTVLATLRAGSYFGEISILNMG 652
+ +G +GK+ Y + G + V+ K L GSYFGEI +L G
Sbjct: 107 IREGTIGKKXYFIQHGVVSVLTKGNKE--XKLSDGSYFGEICLLTRG 151
>pdb|4HBN|A Chain A, Crystal Structure Of The Human Hcn4 Channel C-terminus
Carrying The S672r Mutation
Length = 205
Score = 50.8 bits (120), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 33/119 (27%), Positives = 50/119 (42%), Gaps = 40/119 (33%)
Query: 458 IFQNTEAGFLCELVLRLRPVLFSPGDYICRKGN--------------------------- 490
+F N + F+ ++ +LR +F PGDYI R+G
Sbjct: 76 LFANADPNFVTSMLTKLRFEVFQPGDYIIREGTIGKKMYFIQHGVVSVLTKGNKETKLAD 135
Query: 491 -------------RRTASVRSVGYSDLFVLSKTDMWDVLKEYPAARVRLESIAVKRLQK 536
RRTA VR+ Y L+ LS + +VL+EYP R E++A+ RL +
Sbjct: 136 GSYFGEICLLTRGRRTARVRADTYCRLYSLSVDNFNEVLEEYPMMRRAFETVALDRLDR 194
Score = 37.0 bits (84), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 26/47 (55%), Gaps = 2/47 (4%)
Query: 606 LEKGEVGKEMYIVNRGRLQVVADNGKTVLATLRAGSYFGEISILNMG 652
+ +G +GK+MY + G + V+ K L GSYFGEI +L G
Sbjct: 104 IREGTIGKKMYFIQHGVVSVLTKGNKE--TKLADGSYFGEICLLTRG 148
>pdb|2PTM|A Chain A, Structure And Rearrangements In The Carboxy-Terminal
Region Of Spih Channels
Length = 198
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 46/247 (18%), Positives = 89/247 (36%), Gaps = 92/247 (37%)
Query: 331 SVSAARKEFQAKLDGVKTYMRMRRVPNALQVKVIKWFDYLWLTQKCSDEEKAVSCLPGPG 390
++ ++ ++++ KL V+ YM+ R++P+ L+ K++ +++Y +
Sbjct: 2 AMDSSSRQYREKLKQVEEYMQYRKLPSHLRNKILDYYEYRY------------------- 42
Query: 391 SSSTKLVHGGQYELEEIAIVSNQATPNQVKYGSGPLYMSANGPKVVPDKLKAEIAINVHL 450
G ++ + + V + ++ ++A
Sbjct: 43 --------------------------------RGKMFDERHIFREVSESIRQDVANYNCR 70
Query: 451 DTLKRVEIFQNTEAGFLCELVLRLRPVLFSPGDYICRKG--------------------- 489
D + V F ++ F+ +V L +F P DY+ ++G
Sbjct: 71 DLVASVPFFVGADSNFVTRVVTLLEFEVFQPADYVIQEGTFGDRMFFIQQGIVDIIMSDG 130
Query: 490 --------------------NRRTASVRSVGYSDLFVLSKTDMWDVLKEYPAARVRLESI 529
RR ASV+ Y LF LS VL E+PA R +E I
Sbjct: 131 VIATSLSDGSYFGEICLLTRERRVASVKCETYCTLFSLSVQHFNQVLDEFPAMRKTMEEI 190
Query: 530 AVKRLQK 536
AV+RL +
Sbjct: 191 AVRRLTR 197
Score = 35.4 bits (80), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 14/45 (31%), Positives = 27/45 (60%), Gaps = 1/45 (2%)
Query: 606 LEKGEVGKEMYIVNRGRLQVVADNGKTVLATLRAGSYFGEISILN 650
+++G G M+ + +G + ++ +G + +L GSYFGEI +L
Sbjct: 106 IQEGTFGDRMFFIQQGIVDIIMSDG-VIATSLSDGSYFGEICLLT 149
>pdb|3UKN|A Chain A, Structure Of The C-LinkerCNBHD OF ZELK CHANNELS IN C 2 2
21 SPACE Group
pdb|3UKN|B Chain B, Structure Of The C-LinkerCNBHD OF ZELK CHANNELS IN C 2 2
21 SPACE Group
pdb|3UKN|C Chain C, Structure Of The C-LinkerCNBHD OF ZELK CHANNELS IN C 2 2
21 SPACE Group
pdb|3UKT|B Chain B, Structure Of The C-LinkerCNBHD OF ZELK CHANNELS IN P1 21 1
SPACE Group
pdb|3UKT|A Chain A, Structure Of The C-LinkerCNBHD OF ZELK CHANNELS IN P1 21 1
SPACE Group
pdb|3UKT|C Chain C, Structure Of The C-LinkerCNBHD OF ZELK CHANNELS IN P1 21 1
SPACE Group
pdb|3UKT|D Chain D, Structure Of The C-LinkerCNBHD OF ZELK CHANNELS IN P1 21 1
SPACE Group
pdb|3UKV|B Chain B, Structure Of The C-LinkerCNBHD OF ZELK CHANNELS IN P 1 21
1 SPACE Group, Crystallized In The Presence Of Camp
pdb|3UKV|A Chain A, Structure Of The C-LinkerCNBHD OF ZELK CHANNELS IN P 1 21
1 SPACE Group, Crystallized In The Presence Of Camp
pdb|3UKV|C Chain C, Structure Of The C-LinkerCNBHD OF ZELK CHANNELS IN P 1 21
1 SPACE Group, Crystallized In The Presence Of Camp
pdb|3UKV|D Chain D, Structure Of The C-LinkerCNBHD OF ZELK CHANNELS IN P 1 21
1 SPACE Group, Crystallized In The Presence Of Camp
Length = 212
Score = 37.4 bits (85), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 39/153 (25%), Positives = 76/153 (49%), Gaps = 27/153 (17%)
Query: 434 KVVPDKLKAEIAINVHLDTLKRVEIFQNTEAGFLCELVLRLRPVLFSPGDYICRKGNRRT 493
K PD+L+A+IA++++ + L+ + +F++ G L L L ++ +PG+++ R+G+
Sbjct: 59 KDFPDELRADIAMHLNKELLQ-LPLFESASRGCLRSLSLIIKTSFCAPGEFLIRQGDALQ 117
Query: 494 ASVRSVGYSDLFVLSKTDMWDVLKEYPAARV--RLESIAVKRLQKYKRTPLEKGISPSPF 551
A FV S + +VLK+ + + + I L K E+ I
Sbjct: 118 AIY--------FVCSGS--MEVLKDNTVLAILGKGDLIGSDSLTK------EQVI----- 156
Query: 552 PGNRRTASVRSVGYSDLFVLSKTDMWDVLKEYP 584
+ A+V+++ Y DL +S + +VL+ YP
Sbjct: 157 ---KTNANVKALTYCDLQYISLKGLREVLRLYP 186
>pdb|3OF1|A Chain A, Crystal Structure Of Bcy1, The Yeast Regulatory Subunit Of
Pka
Length = 246
Score = 35.4 bits (80), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 21/80 (26%), Positives = 40/80 (50%), Gaps = 8/80 (10%)
Query: 578 DVLKEYPA-------ARVRLESIAVKRLQKYKRTPLEKGEVGKEMYIVNRGRLQVVADNG 630
D+LK P R +L ++ + T + +G+ G+ Y++ G + V + G
Sbjct: 125 DLLKSMPVLKSLTTYDRAKLADALDTKIYQPGETIIREGDQGENFYLIEYGAVDV-SKKG 183
Query: 631 KTVLATLRAGSYFGEISILN 650
+ V+ L+ YFGE+++LN
Sbjct: 184 QGVINKLKDHDYFGEVALLN 203
>pdb|2BYV|E Chain E, Structure Of The Camp Responsive Exchange Factor Epac2 In
Its Auto-Inhibited State
Length = 999
Score = 33.9 bits (76), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 30/52 (57%), Gaps = 1/52 (1%)
Query: 608 KGEVGKEMYIVNRGRLQVVADNGKTVLATLRAGSYFGEISILNMGTAGTNLI 659
+GE G YI+ +G + VV GK V+ TL G FG+++++N +++
Sbjct: 375 QGEEGTSWYIILKGSVNVVI-YGKGVVCTLHEGDDFGKLALVNDAPRAASIV 425
>pdb|4F7Z|A Chain A, Conformational Dynamics Of Exchange Protein Directly
Activated By Camp
Length = 999
Score = 33.5 bits (75), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 30/52 (57%), Gaps = 1/52 (1%)
Query: 608 KGEVGKEMYIVNRGRLQVVADNGKTVLATLRAGSYFGEISILNMGTAGTNLI 659
+GE G YI+ +G + VV GK V+ TL G FG+++++N +++
Sbjct: 375 QGEEGTSWYIILKGSVNVVI-YGKGVVCTLHEGDDFGKLALVNDAPRAASIV 425
>pdb|1O7F|A Chain A, Crystal Structure Of The Regulatory Domain Of Epac2
Length = 469
Score = 33.5 bits (75), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 30/52 (57%), Gaps = 1/52 (1%)
Query: 608 KGEVGKEMYIVNRGRLQVVADNGKTVLATLRAGSYFGEISILNMGTAGTNLI 659
+GE G YI+ +G + VV GK V+ TL G FG+++++N +++
Sbjct: 375 QGEEGTSWYIILKGSVNVVI-YGKGVVCTLHEGDDFGKLALVNDAPRAASIV 425
>pdb|3CF6|E Chain E, Structure Of Epac2 In Complex With Cyclic-Amp And Rap
Length = 694
Score = 33.5 bits (75), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 30/52 (57%), Gaps = 1/52 (1%)
Query: 608 KGEVGKEMYIVNRGRLQVVADNGKTVLATLRAGSYFGEISILNMGTAGTNLI 659
+GE G YI+ +G + VV GK V+ TL G FG+++++N +++
Sbjct: 70 QGEEGTSWYIILKGSVNVVI-YGKGVVCTLHEGDDFGKLALVNDAPRAASIV 120
>pdb|3OCP|A Chain A, Crystal Structure Of Camp Bound Cgmp-Dependent Protein
Kinase(92-227)
pdb|3OCP|B Chain B, Crystal Structure Of Camp Bound Cgmp-Dependent Protein
Kinase(92-227)
pdb|3OD0|A Chain A, Crystal Structure Of Cgmp Bound Cgmp-Dependent Protein
Kinase(92-227)
pdb|3OD0|B Chain B, Crystal Structure Of Cgmp Bound Cgmp-Dependent Protein
Kinase(92-227)
pdb|3OGJ|A Chain A, Crystal Structure Of Partial Apo (92-227) Of
Cgmp-Dependent Protein Kinase
pdb|3OGJ|B Chain B, Crystal Structure Of Partial Apo (92-227) Of
Cgmp-Dependent Protein Kinase
pdb|3OGJ|C Chain C, Crystal Structure Of Partial Apo (92-227) Of
Cgmp-Dependent Protein Kinase
pdb|3OGJ|D Chain D, Crystal Structure Of Partial Apo (92-227) Of
Cgmp-Dependent Protein Kinase
Length = 139
Score = 32.7 bits (73), Expect = 0.67, Method: Composition-based stats.
Identities = 15/44 (34%), Positives = 29/44 (65%), Gaps = 2/44 (4%)
Query: 606 LEKGEVGKEMYIVNRGRLQVVADNGKTVLATLRAGSYFGEISIL 649
+++G+VG +Y++ G+++V + K L T+ G FGE++IL
Sbjct: 58 IKEGDVGSLVYVMEDGKVEVTKEGVK--LCTMGPGKVFGELAIL 99
>pdb|3SHR|A Chain A, Crystal Structure Of Cgmp-Dependent Protein Kinase Reveals
Novel Site Of Interchain Communication
pdb|3SHR|B Chain B, Crystal Structure Of Cgmp-Dependent Protein Kinase Reveals
Novel Site Of Interchain Communication
Length = 299
Score = 32.3 bits (72), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 29/44 (65%), Gaps = 2/44 (4%)
Query: 606 LEKGEVGKEMYIVNRGRLQVVADNGKTVLATLRAGSYFGEISIL 649
+++G+VG +Y++ G+++V + K L T+ G FGE++IL
Sbjct: 74 IKEGDVGSLVYVMEDGKVEVTKEGVK--LCTMGPGKVFGELAIL 115
>pdb|1WGP|A Chain A, Solution Structure Of The Cnmp-Binding Domain From
Arabidopsis Thaliana Cyclic Nucleotide-Regulated Ion
Channel
Length = 137
Score = 32.3 bits (72), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 24/38 (63%)
Query: 453 LKRVEIFQNTEAGFLCELVLRLRPVLFSPGDYICRKGN 490
++RV +F+N + L + RL+P LF+ Y+ R+G+
Sbjct: 8 VRRVPLFENMDERLLDAICERLKPCLFTEKSYLVREGD 45
>pdb|3MW2|A Chain A, Crystal Structure Of Beta-Neurexin 1 With The Splice
Insert 4
pdb|3MW2|B Chain B, Crystal Structure Of Beta-Neurexin 1 With The Splice
Insert 4
Length = 207
Score = 32.3 bits (72), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 22/89 (24%), Positives = 43/89 (48%), Gaps = 15/89 (16%)
Query: 573 KTDMWDVLKEYPAARVRLESIAVKRLQKYKRTPLEKGEVGKEMYIVNRGRLQVVADNGKT 632
+ D W V++ YPA E +A+ R +R P G V E +++++GR + ++ T
Sbjct: 107 QVDSWPVIERYPAGNNDNERLAIAR----QRIPYRLGRVVDE-WLLDKGRQLTIFNSQAT 161
Query: 633 VLATLR----------AGSYFGEISILNM 651
++ + +G Y+ + +LNM
Sbjct: 162 IIIGGKEQGQPFQGQLSGLYYNGLKVLNM 190
>pdb|2R1B|A Chain A, Crystal Structure Of Rat Neurexin 1beta With A Splice
Insert At Ss#4
pdb|2R1B|B Chain B, Crystal Structure Of Rat Neurexin 1beta With A Splice
Insert At Ss#4
Length = 220
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 22/89 (24%), Positives = 43/89 (48%), Gaps = 15/89 (16%)
Query: 573 KTDMWDVLKEYPAARVRLESIAVKRLQKYKRTPLEKGEVGKEMYIVNRGRLQVVADNGKT 632
+ D W V++ YPA E +A+ R +R P G V E +++++GR + ++ T
Sbjct: 114 QVDSWPVIERYPAGNNDNERLAIAR----QRIPYRLGRVVDE-WLLDKGRQLTIFNSQAT 168
Query: 633 VLATLR----------AGSYFGEISILNM 651
++ + +G Y+ + +LNM
Sbjct: 169 IIIGGKEQGQPFQGQLSGLYYNGLKVLNM 197
>pdb|4EV0|A Chain A, Crystal Structure Of Thermus Thermophilus Catabolite
Activator Protein
pdb|4EV0|D Chain D, Crystal Structure Of Thermus Thermophilus Catabolite
Activator Protein
Length = 216
Score = 32.0 bits (71), Expect = 1.1, Method: Composition-based stats.
Identities = 17/60 (28%), Positives = 34/60 (56%), Gaps = 3/60 (5%)
Query: 596 KRLQKYKRTPLEKGEVGKEMYIVNRGRLQVVADN---GKTVLATLRAGSYFGEISILNMG 652
+RL + +G++G+ +Y+V G++++ + + LA L G FGE+S+L+ G
Sbjct: 24 RRLYPQGKPIFYQGDLGQALYLVASGKVRLFRTHLGGQERTLALLGPGELFGEMSLLDEG 83
>pdb|3R6S|A Chain A, Crystal Structure Of Glxr Transcription Factor From
Corynebacterium Glutamicum With Camp
pdb|3R6S|B Chain B, Crystal Structure Of Glxr Transcription Factor From
Corynebacterium Glutamicum With Camp
pdb|3R6S|C Chain C, Crystal Structure Of Glxr Transcription Factor From
Corynebacterium Glutamicum With Camp
pdb|3R6S|D Chain D, Crystal Structure Of Glxr Transcription Factor From
Corynebacterium Glutamicum With Camp
pdb|3R6S|E Chain E, Crystal Structure Of Glxr Transcription Factor From
Corynebacterium Glutamicum With Camp
pdb|3R6S|F Chain F, Crystal Structure Of Glxr Transcription Factor From
Corynebacterium Glutamicum With Camp
Length = 247
Score = 31.6 bits (70), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 37/67 (55%), Gaps = 3/67 (4%)
Query: 604 TPLEKGEVGKEMYIVNRGRLQVV--ADNGKTVLATLRAGS-YFGEISILNMGTAGTNLIQ 660
T ++GE G +YI+ G++++ A +G+ L T+ S FGE+SI + G ++ +
Sbjct: 59 TIFDEGEPGDRLYIITSGKVKLARHAPDGRENLLTIMGPSDMFGELSIFDPGPRTSSAVC 118
Query: 661 ECEDHIS 667
E H +
Sbjct: 119 VTEVHAA 125
>pdb|4F3Z|A Chain A, Crystal Structure Of A Swine H1n2 Influenza Virus
Hemagglutinin
pdb|4F3Z|C Chain C, Crystal Structure Of A Swine H1n2 Influenza Virus
Hemagglutinin
pdb|4F3Z|E Chain E, Crystal Structure Of A Swine H1n2 Influenza Virus
Hemagglutinin
Length = 329
Score = 30.8 bits (68), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 20/73 (27%), Positives = 33/73 (45%), Gaps = 8/73 (10%)
Query: 68 ADCAVHRVAERYPRSSGPNLTF---VFDPAGRFSYYWSMI-----VSLAFLYNFWVIIYR 119
AD V + RY + P + V D AGR +YYW+++ ++ N V Y
Sbjct: 197 ADAYVFVCSSRYSKKFKPEIAACPKVRDQAGRINYYWTLVEPGDKITFEATGNLVVPRYA 256
Query: 120 FAFQEINRESLVI 132
FA + + ++I
Sbjct: 257 FAMERNSGSGIII 269
>pdb|3MZH|A Chain A, Crystal Structure Of Camp Receptor Protein From
Mycobacterium Tuberculosis In Complex With Camp And Its
Dna Binding Element
pdb|3MZH|B Chain B, Crystal Structure Of Camp Receptor Protein From
Mycobacterium Tuberculosis In Complex With Camp And Its
Dna Binding Element
Length = 225
Score = 30.4 bits (67), Expect = 3.7, Method: Composition-based stats.
Identities = 18/63 (28%), Positives = 31/63 (49%), Gaps = 5/63 (7%)
Query: 604 TPLEKGEVGKEMYIVNRGRLQV---VADNGKTVLATLRAGSYFGEISILNMG--TAGTNL 658
T +GE G +YI+ G++++ D + +L + FGE+SI + G T+
Sbjct: 37 TVFAEGEPGDRLYIIISGKVKIGRRAPDGRENLLTIMGPSDMFGELSIFDPGPRTSSATT 96
Query: 659 IQE 661
I E
Sbjct: 97 ITE 99
>pdb|3H3U|A Chain A, Crystal Structure Of Crp (Camp Receptor Protein) From
Mycoba Tuberculosis
pdb|3H3U|B Chain B, Crystal Structure Of Crp (Camp Receptor Protein) From
Mycoba Tuberculosis
Length = 224
Score = 30.4 bits (67), Expect = 3.8, Method: Composition-based stats.
Identities = 18/63 (28%), Positives = 31/63 (49%), Gaps = 5/63 (7%)
Query: 604 TPLEKGEVGKEMYIVNRGRLQV---VADNGKTVLATLRAGSYFGEISILNMG--TAGTNL 658
T +GE G +YI+ G++++ D + +L + FGE+SI + G T+
Sbjct: 36 TVFAEGEPGDRLYIIISGKVKIGRRAPDGRENLLTIMGPSDMFGELSIFDPGPRTSSATT 95
Query: 659 IQE 661
I E
Sbjct: 96 ITE 98
>pdb|3I54|A Chain A, Crystal Structure Of Mtbcrp In Complex With Camp
pdb|3I54|B Chain B, Crystal Structure Of Mtbcrp In Complex With Camp
pdb|3I54|C Chain C, Crystal Structure Of Mtbcrp In Complex With Camp
pdb|3I54|D Chain D, Crystal Structure Of Mtbcrp In Complex With Camp
pdb|3I59|B Chain B, Crystal Structure Of Mtbcrp In Complex With N6-Camp
Length = 249
Score = 29.6 bits (65), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 15/52 (28%), Positives = 27/52 (51%), Gaps = 3/52 (5%)
Query: 604 TPLEKGEVGKEMYIVNRGRLQV---VADNGKTVLATLRAGSYFGEISILNMG 652
T +GE G +YI+ G++++ D + +L + FGE+SI + G
Sbjct: 61 TVFAEGEPGDRLYIIISGKVKIGRRAPDGRENLLTIMGPSDMFGELSIFDPG 112
>pdb|3D0S|A Chain A, Camp Receptor Protein From M.Tuberculosis, Camp-Free Form
pdb|3D0S|B Chain B, Camp Receptor Protein From M.Tuberculosis, Camp-Free Form
pdb|4A2U|A Chain A, Crp(Cap) From Myco. Tuberculosis, With Camp
pdb|4A2U|B Chain B, Crp(Cap) From Myco. Tuberculosis, With Camp
pdb|4A2U|C Chain C, Crp(Cap) From Myco. Tuberculosis, With Camp
pdb|4A2U|D Chain D, Crp(Cap) From Myco. Tuberculosis, With Camp
pdb|4A2U|E Chain E, Crp(Cap) From Myco. Tuberculosis, With Camp
pdb|4A2U|F Chain F, Crp(Cap) From Myco. Tuberculosis, With Camp
pdb|4A2U|G Chain G, Crp(Cap) From Myco. Tuberculosis, With Camp
pdb|4A2U|H Chain H, Crp(Cap) From Myco. Tuberculosis, With Camp
Length = 227
Score = 29.3 bits (64), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 15/52 (28%), Positives = 27/52 (51%), Gaps = 3/52 (5%)
Query: 604 TPLEKGEVGKEMYIVNRGRLQV---VADNGKTVLATLRAGSYFGEISILNMG 652
T +GE G +YI+ G++++ D + +L + FGE+SI + G
Sbjct: 39 TVFAEGEPGDRLYIIISGKVKIGRRAPDGRENLLTIMGPSDMFGELSIFDPG 90
>pdb|3I59|A Chain A, Crystal Structure Of Mtbcrp In Complex With N6-Camp
Length = 249
Score = 29.3 bits (64), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 30/52 (57%), Gaps = 3/52 (5%)
Query: 604 TPLEKGEVGKEMYIVNRGRLQV--VADNGKTVLATLRAGS-YFGEISILNMG 652
T +GE G +YI+ G++++ A +G+ L T+ S FGE+SI + G
Sbjct: 61 TVFAEGEPGDRLYIIISGKVKIGRRAPDGRENLLTIXGPSDMFGELSIFDPG 112
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.137 0.418
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 19,048,457
Number of Sequences: 62578
Number of extensions: 758948
Number of successful extensions: 1764
Number of sequences better than 100.0: 32
Number of HSP's better than 100.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 19
Number of HSP's that attempted gapping in prelim test: 1700
Number of HSP's gapped (non-prelim): 78
length of query: 679
length of database: 14,973,337
effective HSP length: 105
effective length of query: 574
effective length of database: 8,402,647
effective search space: 4823119378
effective search space used: 4823119378
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.8 bits)