Query psy1512
Match_columns 679
No_of_seqs 397 out of 3191
Neff 8.6
Searched_HMMs 46136
Date Fri Aug 16 21:05:41 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy1512.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/1512hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0500|consensus 100.0 8.7E-77 1.9E-81 608.3 27.5 425 106-603 4-443 (536)
2 KOG0498|consensus 100.0 1.9E-72 4E-77 622.0 31.7 434 85-593 64-543 (727)
3 PLN03192 Voltage-dependent pot 100.0 5.8E-65 1.3E-69 598.6 38.8 443 86-603 49-506 (823)
4 KOG0499|consensus 100.0 4.9E-65 1.1E-69 527.5 24.4 439 86-603 215-661 (815)
5 KOG0501|consensus 100.0 9.2E-60 2E-64 486.3 18.5 442 76-594 195-669 (971)
6 KOG0614|consensus 99.9 2.6E-23 5.6E-28 215.5 2.2 202 437-662 140-369 (732)
7 KOG1113|consensus 99.8 1.1E-21 2.4E-26 195.9 3.6 187 448-659 119-329 (368)
8 KOG3713|consensus 99.7 3.3E-17 7.1E-22 171.7 17.8 190 133-348 242-449 (477)
9 KOG1545|consensus 99.7 8.3E-20 1.8E-24 181.2 -4.1 284 19-338 118-455 (507)
10 KOG1419|consensus 99.4 1E-12 2.3E-17 138.1 13.9 252 90-368 85-354 (654)
11 PF00520 Ion_trans: Ion transp 99.4 1.3E-12 2.9E-17 127.6 9.0 178 136-325 2-200 (200)
12 KOG0500|consensus 99.2 2.3E-09 5.1E-14 112.2 20.9 70 604-677 340-414 (536)
13 KOG4390|consensus 98.9 1.3E-11 2.8E-16 124.3 -10.4 186 131-342 227-422 (632)
14 KOG0498|consensus 98.8 2.2E-07 4.9E-12 105.0 21.3 64 602-665 450-519 (727)
15 PLN03192 Voltage-dependent pot 98.8 7.1E-07 1.5E-11 106.3 25.0 65 602-666 405-473 (823)
16 PF07885 Ion_trans_2: Ion chan 98.8 5.5E-08 1.2E-12 80.1 10.4 75 239-330 2-78 (79)
17 KOG1113|consensus 98.7 1.3E-08 2.8E-13 102.9 5.4 77 584-662 135-213 (368)
18 KOG0614|consensus 98.7 3.5E-09 7.5E-14 111.5 0.4 174 447-652 268-442 (732)
19 PRK09392 ftrB transcriptional 98.7 7.2E-09 1.6E-13 104.7 2.2 127 450-596 6-132 (236)
20 KOG0499|consensus 98.6 2.9E-08 6.3E-13 105.6 5.4 84 588-678 540-633 (815)
21 KOG2968|consensus 98.6 1.4E-08 3.1E-13 112.6 2.0 174 483-669 395-588 (1158)
22 PF08412 Ion_trans_N: Ion tran 98.6 1.1E-07 2.3E-12 76.3 5.3 56 66-125 18-73 (77)
23 KOG1420|consensus 98.5 4.6E-08 1E-12 103.4 3.3 179 134-340 165-352 (1103)
24 PLN02868 acyl-CoA thioesterase 98.4 1.2E-06 2.7E-11 95.8 10.8 42 450-491 7-48 (413)
25 cd00038 CAP_ED effector domain 98.4 1.3E-07 2.9E-12 82.8 2.1 114 458-590 1-114 (115)
26 PRK11753 DNA-binding transcrip 98.2 5.3E-07 1.1E-11 89.3 2.5 121 460-599 6-127 (211)
27 COG0664 Crp cAMP-binding prote 98.2 7.6E-07 1.6E-11 87.8 1.9 131 454-603 3-133 (214)
28 COG2905 Predicted signal-trans 98.0 3.2E-06 6.9E-11 90.9 4.1 125 450-599 6-132 (610)
29 PRK10537 voltage-gated potassi 98.0 5E-05 1.1E-09 81.8 12.9 53 276-329 167-221 (393)
30 PRK10402 DNA-binding transcrip 98.0 1.2E-06 2.7E-11 87.7 0.5 111 468-597 25-135 (226)
31 PF00027 cNMP_binding: Cyclic 98.0 5.8E-06 1.3E-10 69.4 4.5 63 604-666 9-76 (91)
32 smart00100 cNMP Cyclic nucleot 98.0 1.7E-06 3.8E-11 76.1 0.7 115 458-591 1-117 (120)
33 PF00027 cNMP_binding: Cyclic 98.0 1.7E-07 3.6E-12 79.0 -6.2 87 476-585 1-91 (91)
34 COG0664 Crp cAMP-binding prote 97.9 1.5E-05 3.3E-10 78.4 6.4 64 603-666 32-100 (214)
35 PRK10402 DNA-binding transcrip 97.9 3.2E-05 6.9E-10 77.5 7.4 70 597-666 34-108 (226)
36 PRK11161 fumarate/nitrate redu 97.9 7E-06 1.5E-10 82.8 2.7 126 453-598 15-141 (235)
37 PRK11753 DNA-binding transcrip 97.8 3.5E-05 7.5E-10 76.2 7.1 66 601-666 27-98 (211)
38 PRK09392 ftrB transcriptional 97.8 2.7E-05 5.9E-10 78.5 6.4 70 597-666 33-106 (236)
39 smart00100 cNMP Cyclic nucleot 97.8 6.1E-05 1.3E-09 66.0 7.2 64 601-664 24-94 (120)
40 PRK13918 CRP/FNR family transc 97.7 8.1E-05 1.8E-09 73.1 7.1 63 604-666 16-84 (202)
41 TIGR03697 NtcA_cyano global ni 97.7 9.4E-05 2E-09 72.0 7.4 63 604-666 3-72 (193)
42 PRK09391 fixK transcriptional 97.7 1E-05 2.2E-10 81.3 0.2 107 470-599 34-141 (230)
43 cd00038 CAP_ED effector domain 97.6 0.00014 3.1E-09 63.3 6.2 65 602-666 25-94 (115)
44 PRK11161 fumarate/nitrate redu 97.4 0.00057 1.2E-08 68.8 8.4 66 601-666 44-113 (235)
45 KOG2302|consensus 97.4 0.0089 1.9E-07 68.1 18.0 88 87-185 1103-1201(1956)
46 KOG3684|consensus 97.3 0.0054 1.2E-07 64.9 14.9 91 274-373 284-376 (489)
47 TIGR03697 NtcA_cyano global ni 97.1 0.00011 2.4E-09 71.4 -0.3 100 482-600 1-102 (193)
48 PLN03223 Polycystin cation cha 96.8 0.1 2.2E-06 62.4 20.7 32 304-335 1397-1428(1634)
49 PRK09391 fixK transcriptional 96.8 0.0032 6.9E-08 63.2 7.2 62 603-665 47-111 (230)
50 PRK13918 CRP/FNR family transc 96.6 0.00053 1.1E-08 67.3 -0.2 84 473-576 5-90 (202)
51 PF01007 IRK: Inward rectifier 96.5 0.016 3.4E-07 61.1 10.0 91 238-332 44-142 (336)
52 KOG2968|consensus 96.3 0.002 4.2E-08 73.0 2.4 112 464-598 498-613 (1158)
53 KOG0501|consensus 96.0 0.0076 1.7E-07 65.1 4.5 61 604-666 581-645 (971)
54 KOG3542|consensus 95.8 0.029 6.2E-07 61.6 8.1 67 437-512 23-89 (1283)
55 KOG4404|consensus 95.7 0.031 6.7E-07 56.8 7.4 59 277-335 186-253 (350)
56 KOG1418|consensus 95.7 0.017 3.7E-07 63.4 6.0 58 276-334 114-173 (433)
57 COG2905 Predicted signal-trans 95.6 0.024 5.2E-07 61.9 6.5 83 576-659 5-96 (610)
58 KOG3827|consensus 94.4 0.14 2.9E-06 53.6 7.8 95 233-331 65-169 (400)
59 TIGR00870 trp transient-recept 92.7 14 0.00031 43.9 22.4 25 231-255 507-531 (743)
60 KOG2301|consensus 92.4 0.88 1.9E-05 57.1 11.6 106 134-252 875-982 (1592)
61 KOG2302|consensus 91.3 23 0.00051 41.8 20.0 78 100-188 80-160 (1956)
62 KOG4404|consensus 90.9 0.063 1.4E-06 54.6 -0.2 55 275-329 78-133 (350)
63 KOG2301|consensus 90.9 8.2 0.00018 48.9 17.6 103 101-218 1159-1268(1592)
64 KOG3193|consensus 86.8 0.44 9.6E-06 51.5 2.6 29 278-307 218-248 (1087)
65 KOG3609|consensus 84.2 73 0.0016 37.3 18.5 101 229-332 501-610 (822)
66 PF00060 Lig_chan: Ligand-gate 84.1 0.78 1.7E-05 42.1 2.6 74 274-353 41-115 (148)
67 PF08016 PKD_channel: Polycyst 81.2 86 0.0019 34.5 17.8 22 131-152 242-263 (425)
68 KOG3614|consensus 79.3 62 0.0014 39.9 16.3 86 95-190 790-875 (1381)
69 PF05899 Cupin_3: Protein of u 77.4 4.4 9.5E-05 32.6 4.5 30 612-643 25-54 (74)
70 KOG1418|consensus 77.0 0.79 1.7E-05 50.1 0.1 47 276-323 241-297 (433)
71 PF08006 DUF1700: Protein of u 73.3 14 0.00031 35.3 7.8 45 340-386 4-50 (181)
72 KOG3542|consensus 72.7 0.89 1.9E-05 50.5 -0.9 121 438-585 268-393 (1283)
73 COG4709 Predicted membrane pro 71.0 18 0.00039 34.4 7.3 44 341-386 5-50 (195)
74 PF04831 Popeye: Popeye protei 70.7 17 0.00038 33.4 7.0 115 462-596 15-132 (153)
75 PRK11832 putative DNA-binding 63.4 3.1 6.6E-05 40.6 0.8 34 555-588 81-114 (207)
76 KOG1053|consensus 58.3 1.2E+02 0.0026 36.0 12.0 47 283-330 617-663 (1258)
77 PF13314 DUF4083: Domain of un 57.2 39 0.00085 25.5 5.4 48 304-351 6-56 (58)
78 PF00520 Ion_trans: Ion transp 57.0 90 0.002 29.3 10.0 91 131-255 31-123 (200)
79 PF10047 DUF2281: Protein of u 52.8 17 0.00037 28.5 3.2 23 352-374 9-31 (66)
80 KOG3599|consensus 41.2 7.1E+02 0.015 29.9 21.0 22 131-152 498-519 (798)
81 KOG1054|consensus 36.7 41 0.00088 37.6 4.1 53 278-331 596-649 (897)
82 PLN02868 acyl-CoA thioesterase 35.4 52 0.0011 36.0 4.9 38 551-588 86-123 (413)
83 PRK12468 flhB flagellar biosyn 35.2 4.9E+02 0.011 28.2 12.0 61 306-366 187-247 (386)
84 PF08285 DPM3: Dolichol-phosph 34.6 2.8E+02 0.006 23.3 8.9 37 320-356 51-90 (91)
85 PRK09108 type III secretion sy 34.5 5.2E+02 0.011 27.7 12.0 67 300-366 176-242 (353)
86 COG3837 Uncharacterized conser 32.3 62 0.0014 29.9 3.9 36 610-648 62-97 (161)
87 PF02037 SAP: SAP domain; Int 31.9 1E+02 0.0022 20.6 4.0 26 342-367 5-35 (35)
88 PRK12721 secretion system appa 31.6 6.2E+02 0.013 27.1 11.9 65 302-366 176-240 (349)
89 KOG3676|consensus 31.5 9.4E+02 0.02 28.5 19.5 61 303-364 621-682 (782)
90 PF10011 DUF2254: Predicted me 30.6 2.5E+02 0.0055 30.2 9.1 62 274-335 97-159 (371)
91 COG5559 Uncharacterized conser 30.4 68 0.0015 24.2 3.1 23 351-373 7-29 (65)
92 KOG4440|consensus 30.1 1.5E+02 0.0032 33.7 6.9 90 238-330 575-667 (993)
93 COG3450 Predicted enzyme of th 29.8 99 0.0021 27.3 4.6 29 613-643 64-92 (116)
94 PRK08156 type III secretion sy 29.4 7.3E+02 0.016 26.6 12.0 62 305-366 174-235 (361)
95 PF07697 7TMR-HDED: 7TM-HD ext 28.9 3.8E+02 0.0082 26.0 9.5 54 437-491 149-205 (222)
96 PRK05702 flhB flagellar biosyn 27.7 7.9E+02 0.017 26.4 12.0 65 302-366 183-247 (359)
97 TIGR00934 2a38euk potassium up 27.5 2.7E+02 0.0058 33.1 8.8 92 228-325 447-546 (800)
98 TIGR03037 anthran_nbaC 3-hydro 26.4 1.3E+02 0.0029 28.0 5.1 32 612-643 48-80 (159)
99 PF14377 DUF4414: Domain of un 26.2 1E+02 0.0023 26.6 4.2 17 354-370 52-68 (108)
100 PF01484 Col_cuticle_N: Nemato 25.5 2.7E+02 0.0058 20.2 6.9 41 305-345 8-48 (53)
101 COG0662 {ManC} Mannose-6-phosp 25.2 1E+02 0.0023 27.4 4.2 28 612-642 57-84 (127)
102 PRK13109 flhB flagellar biosyn 25.1 7.4E+02 0.016 26.6 11.2 64 303-366 186-249 (358)
103 PF07883 Cupin_2: Cupin domain 24.9 93 0.002 23.9 3.4 26 614-642 21-46 (71)
104 PRK06298 type III secretion sy 24.6 8.9E+02 0.019 25.9 12.0 30 337-366 212-241 (356)
105 PF08566 Pam17: Mitochondrial 24.5 6.1E+02 0.013 24.0 9.5 61 298-358 70-133 (173)
106 TIGR01404 FlhB_rel_III type II 24.3 8.8E+02 0.019 25.8 12.0 63 304-366 177-239 (342)
107 TIGR00328 flhB flagellar biosy 24.2 8.9E+02 0.019 25.8 12.1 65 302-366 176-240 (347)
108 PLN03223 Polycystin cation cha 24.1 1.6E+03 0.034 28.7 19.1 15 171-185 1208-1222(1634)
109 PF06295 DUF1043: Protein of u 24.0 2.8E+02 0.0062 24.8 6.7 10 360-369 45-54 (128)
110 PRK11677 hypothetical protein; 24.0 4.1E+02 0.0089 24.1 7.6 9 360-368 49-57 (134)
111 KOG1278|consensus 23.2 1.1E+03 0.025 26.7 14.3 59 135-194 434-502 (628)
112 PHA03029 hypothetical protein; 21.5 4.2E+02 0.0091 21.1 6.9 40 300-339 2-41 (92)
113 PRK13264 3-hydroxyanthranilate 21.5 1.5E+02 0.0033 28.2 4.6 34 610-643 52-86 (177)
114 TIGR00934 2a38euk potassium up 21.3 3.1E+02 0.0066 32.6 7.8 73 235-317 586-662 (800)
115 PF07077 DUF1345: Protein of u 21.2 7.3E+02 0.016 23.7 10.0 46 277-323 132-179 (180)
No 1
>KOG0500|consensus
Probab=100.00 E-value=8.7e-77 Score=608.26 Aligned_cols=425 Identities=53% Similarity=0.925 Sum_probs=388.4
Q ss_pred HHHHHHHHHHHHHhhhcccccccchhhHHHHHHHHHHHHHHHHHhhheeEEEECCeEeeCHHHHHHHHhcCCCceehhhh
Q psy1512 106 SLAFLYNFWVIIYRFAFQEINRESLVIWFCLDYMADLMYVIDILIHFRTGYLEDGVLQTDSTKLRDHYMNSTTFYIDCLC 185 (679)
Q Consensus 106 ~~~~~~~~~~ip~~~~F~~~~~~~~~~~~~~~~i~d~~f~~Di~l~f~t~y~~~g~~v~d~~~I~~~Ylks~~f~~Dlls 185 (679)
.+.++|++++++.+.+|++.+......|..+|+++|++|++|++++.+++|+++|.+|+|.++.++||+.|+.|.+|++|
T Consensus 4 s~~vLYN~~~li~r~~F~di~~~y~~~wl~ld~~~D~vyllDi~v~~R~gyleqGllV~~~~Kl~~hY~~s~~f~lD~l~ 83 (536)
T KOG0500|consen 4 SLGVLYNMIVLIVRAAFDDIQSSYLENWLPLDYLFDFVYLLDIIVRSRTGYLEQGLLVKDTSKLRKHYVHSTQFKLDVLS 83 (536)
T ss_pred EEehHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhcCeeehhhHHHHHHHHHhhhhhhhhhh
Confidence 45689999999999999998888888999999999999999999999999999999999999999999999999999999
Q ss_pred ccchHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhhhhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCcc
Q psy1512 186 LLPLDFLYLSIGFNSILRLFRLVKIYRFWAFMDRTERHTNYPNLFRSSSLIHYLLVIFHWNGCLYHIIYKNDGFGSRNWV 265 (679)
Q Consensus 186 ~lP~~~~~~~~~~~~~lrl~rllrl~rl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~H~~aCl~~~i~~~~~~~~~~Wi 265 (679)
++|++++++..+..++.|++||+|++|++.++.+.+.++.+++++++.++++++++++||.||+||+++...+++.++|+
T Consensus 84 liP~D~l~~~~~~~~~~r~nRllk~yRl~~F~~rTetrT~~Pn~fri~~lv~~~~ilfHWNaClYf~iS~~~g~~~d~wv 163 (536)
T KOG0500|consen 84 LIPLDLLLFKDGSASLERLNRLLKIYRLFEFFDRTETRTTYPNAFRISKLVHYCLILFHWNACLYFLISKAIGFTTDDWV 163 (536)
T ss_pred hcchhHHhhcCCcchHHHHHHHHHHHHHHHHHHHhccccCCchHHHHHHHHHHHHHHHHHhhHHHHhhhHhcCccccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCC---CC-----chhhhhhHHHHHHHHHHhhcccCCcCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1512 266 YGDS---DT-----TDVVKQYLQSYYWCTLALTTIGDLPRPRSKGEYFFVIVQLLFGLLLFATVLGHVANIVTSVSAARK 337 (679)
Q Consensus 266 ~~~~---~~-----~~~~~~Y~~slywa~~tlttvGdi~~p~t~~e~i~~i~~~i~G~~~~a~~ig~i~~ii~~~~~~~~ 337 (679)
+.+. .. .++..+|+.|+||+..||||+|+.++|.++.|..|.|+-.++|+++||.++|++++++++++..+.
T Consensus 164 Y~~i~d~~~~~c~~~n~~ReY~~S~YWStLTlTTiGe~P~P~t~~ey~F~I~d~LiGvliFAtIvG~VGsmVtnmna~r~ 243 (536)
T KOG0500|consen 164 YPKINDPEFATCDAGNLTREYLYSLYWSTLTLTTIGEQPPPVTSSEYAFVIVDTLIGVLIFATIVGNVGSMVTNMNAART 243 (536)
T ss_pred cCCccCccccccchhHHHHHHHHHHHHHhhhhhhccCCCCCCcCchhhHHHHHHHHHHHHHhhhhccHhHHHHhhhHHHH
Confidence 9643 22 348899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhhcccCchhHHhhcCCCCCCCCcccccCcchhhHHHHHHhhccCcc
Q psy1512 338 EFQAKLDGVKTYMRMRRVPNALQVKVIKWFDYLWLTQKCSDEEKAVSCLPGPGSSSTKLVHGGQYELEEIAIVSNQATPN 417 (679)
Q Consensus 338 ~~~~~~~~l~~~m~~~~lp~~l~~rv~~y~~~~w~~~~~~~~~~~l~~lp~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~ 417 (679)
+||++|+.+++||+.|++|+++|.||.+||+|.|.+++..||+++++.|
T Consensus 244 EFq~~mDGiK~YM~~RkV~~~lq~rVikwfdYlwa~~~~~DEeevl~~L------------------------------- 292 (536)
T KOG0500|consen 244 EFQAKMDGIKQYMRYRKVPKALQTRVIKWFDYLWAHKKIVDEEEVLKLL------------------------------- 292 (536)
T ss_pred HHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhccccccHHHHHHhC-------------------------------
Confidence 9999999999999999999999999999999999999999999999887
Q ss_pred ccccCCCccccccCCCcccCcchHHHHHHHhhhhhhccccccccCChhHHHHHHHhccceEeCCCCEEEEeCCeeeeEEE
Q psy1512 418 QVKYGSGPLYMSANGPKVVPDKLKAEIAINVHLDTLKRVEIFQNTEAGFLCELVLRLRPVLFSPGDYICRKGNRRTASVR 497 (679)
Q Consensus 418 ~~~~~~~~~~~~~~~~~~l~~~Lr~ei~~~~~~~~l~~i~lF~~~~~~~l~~L~~~l~~~~~~pge~I~~~Gd~r~asv~ 497 (679)
|++||.||+.+++.+.|+++++|++|+++++.+|+.++++++|.|||+||++||.
T Consensus 293 -------------------P~kL~aeIA~nvh~dTLkkV~iF~~ce~~lL~elVLklk~qvfSPgDyICrKGdv------ 347 (536)
T KOG0500|consen 293 -------------------PDKLKAEIAINVHLDTLKKVRIFQDCEAGLLVELVLKLKPQVFSPGDYICRKGDV------ 347 (536)
T ss_pred -------------------CHHHHhHhHHHHHHHHHHhhhHHHhcchhHHHHHHHHhcceeeCCCCeEEecCcc------
Confidence 9999999999999999999999999999999999999999999999999999999
Q ss_pred EeeeeEEEEEehhhHHHHHhhChhHHHHHHHHHHHHHhh-----hccCcccCCCC--CCCCCCCCcccccccccccceee
Q psy1512 498 SVGYSDLFVLSKTDMWDVLKEYPAARVRLESIAVKRLQK-----YKRTPLEKGIS--PSPFPGNRRTASVRSVGYSDLFV 570 (679)
Q Consensus 498 a~~~~~ly~I~~g~~~~vl~~~p~~~~~~~~~~~~~~~~-----~~~~~~~~g~~--~~~~~~~~r~atv~A~~~~~l~~ 570 (679)
+.+||+|.+|.+ ++++++.... ....+||.+.+ .+-..|.+|+|+|++++++++++
T Consensus 348 ---gkEMyIVk~G~L--------------~Vv~dDg~t~~~~L~~G~~FGEisIlni~g~~~gNRRtanvrSvGYSDlfv 410 (536)
T KOG0500|consen 348 ---GKEMYIVKEGKL--------------AVVADDGVTVFVTLKAGSVFGEISILNIKGNKNGNRRTANVRSVGYSDLFV 410 (536)
T ss_pred ---cceEEEEEccEE--------------EEEecCCcEEEEEecCCceeeeeEEEEEcCcccCCcceeeeeeeccceeeE
Confidence 889999966644 3333332111 11223333332 34456899999999999999999
Q ss_pred cccchhHHHhhcChhHhhhhHHHHHHHhhhcCC
Q psy1512 571 LSKTDMWDVLKEYPAARVRLESIAVKRLQKYKR 603 (679)
Q Consensus 571 L~r~~f~~il~~~P~~~~~l~~~~~~rl~~~~~ 603 (679)
|+|+|+.+.|++||+.+..+.++..+.+++-+-
T Consensus 411 LskdDl~~aL~eYP~a~~~L~~kgr~iL~kd~l 443 (536)
T KOG0500|consen 411 LSKDDLWEALSEYPDARKRLEEKGRQILHKDGL 443 (536)
T ss_pred eeHHHHHHHHHhCCHHHHHHHHHHHHHhhhccc
Confidence 999999999999999999999887776655433
No 2
>KOG0498|consensus
Probab=100.00 E-value=1.9e-72 Score=622.05 Aligned_cols=434 Identities=26% Similarity=0.515 Sum_probs=368.9
Q ss_pred CCCceEEcCCChhHHHHHHHHHHHHHHHHHHHHHhhhccccccc-------chhhHHHHHHHHHHHHHHHHHhhheeEEE
Q psy1512 85 PNLTFVFDPAGRFSYYWSMIVSLAFLYNFWVIIYRFAFQEINRE-------SLVIWFCLDYMADLMYVIDILIHFRTGYL 157 (679)
Q Consensus 85 ~~~~~vi~P~s~~~~~W~~i~~~~~~~~~~~ip~~~~F~~~~~~-------~~~~~~~~~~i~d~~f~~Di~l~f~t~y~ 157 (679)
+...+||+|+|+++..|+++++++++|++++.|+.++|...+.+ ....+.++|.++|++|++||+++|+|+|+
T Consensus 64 ~~~~~Ii~P~s~~~~~W~~~~Ll~~iya~~v~P~~f~f~~~~~~~~~~d~~~~~~l~v~d~ivD~fflvdIvL~Frtayv 143 (727)
T KOG0498|consen 64 KSRKWILDPYSPFYRVWNKFFLLLVIYAAFVDPLFFYFLLIDDERKCIDGKLAAPLTVLDTIVDIFFLVDIVLNFRTAYV 143 (727)
T ss_pred cccceeECCCChHHHHHHHHHHHHHHHHHHhccceeeEEecccccccccccccCceeeHHHHHHHHHHHHHHHhheEEEE
Confidence 33456999999999999999999999999999999999754321 23456789999999999999999999999
Q ss_pred EC-C-eEeeCHHHHHHHHhcCCCceehhhhccchHHHHHhhh------------hHHHHHHHHHHHHHHHHHHHHhhhhh
Q psy1512 158 ED-G-VLQTDSTKLRDHYMNSTTFYIDCLCLLPLDFLYLSIG------------FNSILRLFRLVKIYRFWAFMDRTERH 223 (679)
Q Consensus 158 ~~-g-~~v~d~~~I~~~Ylks~~f~~Dlls~lP~~~~~~~~~------------~~~~lrl~rllrl~rl~~~~~~~~~~ 223 (679)
+. + ++|.||++||+||+|+ ||++|++|++|++.++.... ...++.+.||+|++|+.++++++++.
T Consensus 144 ~~~s~elV~dpk~IA~rYl~t-wFiiDlis~lP~~~i~~~~~~~~~~~~~~~~~l~~il~~~rL~Rl~Rv~~l~~r~~k~ 222 (727)
T KOG0498|consen 144 DPSSYELVDDPKKIAKRYLKT-WFLIDLISTLPFDQIVVLVVIGSTSLALESTILVGILLLQRLPRLRRVIPLFARLEKD 222 (727)
T ss_pred CCCCceeeeCHHHHHHHHHhh-hHHHHHHHhcChhhheeeeeecccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 84 4 5999999999999995 99999999999999976422 23456677777888888888888876
Q ss_pred ccchh---HHHHHHHHHHHHHHHHHHHHHHHHHHhcCC--CCCC-CcccCC------------CCCchhhhhhHHHHHHH
Q psy1512 224 TNYPN---LFRSSSLIHYLLVIFHWNGCLYHIIYKNDG--FGSR-NWVYGD------------SDTTDVVKQYLQSYYWC 285 (679)
Q Consensus 224 ~~~~~---~~~~~~l~~~~l~~~H~~aCl~~~i~~~~~--~~~~-~Wi~~~------------~~~~~~~~~Y~~slywa 285 (679)
..+.. .+-.+++++..++++||.||+||+++.... +... +|+... ....+++.+|++|+||+
T Consensus 223 ~~~v~~~awa~~a~ll~~~~l~sH~~gc~wYlia~~~~~~~~~~~tw~~~l~~~~~~~~~~~~fg~~s~~~kY~~aLyw~ 302 (727)
T KOG0498|consen 223 TGFVYETAWAGAALLLSVYLLASHWAGCIWYLIAIERPASCPRKATWLGSLGRLLSCYNLSFTFGIYSLALKYVYALYWG 302 (727)
T ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCccccccccccccccccCcccccccchhHHHHHHHHHHHH
Confidence 65543 223668889999999999999999998765 4455 887641 22346788999999999
Q ss_pred HHHhhccc--CCcCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHH
Q psy1512 286 TLALTTIG--DLPRPRSKGEYFFVIVQLLFGLLLFATVLGHVANIVTSVSAARKEFQAKLDGVKTYMRMRRVPNALQVKV 363 (679)
Q Consensus 286 ~~tlttvG--di~~p~t~~e~i~~i~~~i~G~~~~a~~ig~i~~ii~~~~~~~~~~~~~~~~l~~~m~~~~lp~~l~~rv 363 (679)
++||||+| +. +|+|..|++|+|++|++|.++||++||||++++++.+.+..+|+.++.++++||++|+||++||+||
T Consensus 303 l~tLstvG~g~~-~s~~~~E~iFsi~~mi~GllL~A~lIGNmt~~iqs~tsR~~~~r~k~rd~e~~m~~~~LP~~LRqRi 381 (727)
T KOG0498|consen 303 LSTLSTVGYGLV-HANNMGEKIFSIFIMLFGLLLFAYLIGNMTALLQSLTSRTEEMRDKMRDAEQWMSRRQLPPDLRQRI 381 (727)
T ss_pred hhHhhhccCCcc-CCCCcHHHHHHHHHHHHhHHHHHHHHhhHHHhHHHHhHHHHHHHHHHHHHHHHHHhccCCHHHHHHH
Confidence 99999998 55 7999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhcccCchhHHhhcCCCCCCCCcccccCcchhhHHHHHHhhccCccccccCCCccccccCCCcccCcchHHH
Q psy1512 364 IKWFDYLWLTQKCSDEEKAVSCLPGPGSSSTKLVHGGQYELEEIAIVSNQATPNQVKYGSGPLYMSANGPKVVPDKLKAE 443 (679)
Q Consensus 364 ~~y~~~~w~~~~~~~~~~~l~~lp~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~l~~~Lr~e 443 (679)
++|++|.|..++|.||+++|++| |+.||++
T Consensus 382 ~~y~q~kw~~t~Gvdee~lL~~L--------------------------------------------------P~~LR~d 411 (727)
T KOG0498|consen 382 RRYEQYKWLATRGVDEEELLQSL--------------------------------------------------PKDLRRD 411 (727)
T ss_pred HHHHHHHHhhccCcCHHHHHHhC--------------------------------------------------CHHHHHH
Confidence 99999999999999999999988 9999999
Q ss_pred HHHHhhhhhhccccccccCChhHHHHHHHhccceEeCCCCEEEEeCCeeeeEEEEeeeeEEEEEehhhHHHHHhhChhHH
Q psy1512 444 IAINVHLDTLKRVEIFQNTEAGFLCELVLRLRPVLFSPGDYICRKGNRRTASVRSVGYSDLFVLSKTDMWDVLKEYPAAR 523 (679)
Q Consensus 444 i~~~~~~~~l~~i~lF~~~~~~~l~~L~~~l~~~~~~pge~I~~~Gd~r~asv~a~~~~~ly~I~~g~~~~vl~~~p~~~ 523 (679)
|..|+|.++++++|+|++++++++.+|+.+++++.|.|||+|++|||+ .++||||.+|.++.
T Consensus 412 I~~hL~~~lv~~vpLF~~md~~~L~al~~rlk~~~f~pge~iireGd~---------v~~myFI~rG~le~--------- 473 (727)
T KOG0498|consen 412 IKRHLCLDLVRKVPLFAGMDDGLLDALCSRLKPEYFTPGEYIIREGDP---------VTDMYFIVRGSLES--------- 473 (727)
T ss_pred HHHHHhHHHHhhCchhhcCCHHHHHHHHHHhhhhccCCCCeEEecCCc---------cceeEEEEeeeEEE---------
Confidence 999999999999999999999999999999999999999999999999 89999998776532
Q ss_pred HHHHHHHHHHHhhh---ccCcccC-CCCCCCCCC-CCcccccccccccceeecccchhHHHhhcChhHhhhhHHH
Q psy1512 524 VRLESIAVKRLQKY---KRTPLEK-GISPSPFPG-NRRTASVRSVGYSDLFVLSKTDMWDVLKEYPAARVRLESI 593 (679)
Q Consensus 524 ~~~~~~~~~~~~~~---~~~~~~~-g~~~~~~~~-~~r~atv~A~~~~~l~~L~r~~f~~il~~~P~~~~~l~~~ 593 (679)
+.....+.. ....|.+ |++...... .|.++||+|.++|+++.|+++||..++++||.+...+.+.
T Consensus 474 -----~~~~~g~~~~~~~L~~Gd~~GeEl~~~~~~~p~t~TVralt~~el~~L~~~dL~~V~~~f~~~~~~~l~~ 543 (727)
T KOG0498|consen 474 -----ITTDGGGFFVVAILGPGDFFGEELLTWCLDLPQTRTVRALTYCELFRLSADDLKEVLQQFRRLGSKFLQH 543 (727)
T ss_pred -----EEccCCceEEEEEecCCCccchHHHHHHhcCCCCceeehhhhhhHHhccHHHHHHHHHHhHHHHHHHHHh
Confidence 221111111 1122222 212222222 6779999999999999999999999999999999888884
No 3
>PLN03192 Voltage-dependent potassium channel; Provisional
Probab=100.00 E-value=5.8e-65 Score=598.58 Aligned_cols=443 Identities=19% Similarity=0.361 Sum_probs=383.2
Q ss_pred CCceEEcCCChhHHHHHHHHHHHHHHHHHHHHHhhhcccccccchhhHHHHHHHHHHHHHHHHHhhheeEEEEC--CeEe
Q psy1512 86 NLTFVFDPAGRFSYYWSMIVSLAFLYNFWVIIYRFAFQEINRESLVIWFCLDYMADLMYVIDILIHFRTGYLED--GVLQ 163 (679)
Q Consensus 86 ~~~~vi~P~s~~~~~W~~i~~~~~~~~~~~ip~~~~F~~~~~~~~~~~~~~~~i~d~~f~~Di~l~f~t~y~~~--g~~v 163 (679)
..+|||+|+++++.+||++++++++|+++++|+.++|.... ....|.++|+++|++|++||+++|+|+|+++ |.+|
T Consensus 49 ~~~~ii~P~~~~~~~Wd~~~~~~~~y~~~~~p~~~~F~~~~--~~~~~~~~d~i~~~~F~iDi~l~f~~ay~d~~~~~lV 126 (823)
T PLN03192 49 SDGWIISPMDSRYRWWETLMVVLVAYSAWVYPFEVAFLNAS--PKRGLEIADNVVDLFFAVDIVLTFFVAYIDPRTQLLV 126 (823)
T ss_pred cCCeEECCCCcHHHHHHHHHHHHHHHHHHHHHHHHHeeCCC--CCCCeeeHHHHHHHHHHHHHHhheeEEEEeCCCcEEE
Confidence 45689999999999999999999999999999999996322 2234667999999999999999999999986 5799
Q ss_pred eCHHHHHHHHhcCCCceehhhhccchHHHHHhhh-------hHHHHHHHHHHHHHHHHHHHHhhhhhccchh-HHHHHHH
Q psy1512 164 TDSTKLRDHYMNSTTFYIDCLCLLPLDFLYLSIG-------FNSILRLFRLVKIYRFWAFMDRTERHTNYPN-LFRSSSL 235 (679)
Q Consensus 164 ~d~~~I~~~Ylks~~f~~Dlls~lP~~~~~~~~~-------~~~~lrl~rllrl~rl~~~~~~~~~~~~~~~-~~~~~~l 235 (679)
.||++|++||+|+ ||++|++|++|++++..... ...++|++|++|+.|+.+++.+++....++. .++++++
T Consensus 127 ~d~~~I~~~Yl~~-~f~~Dlis~lP~~~i~~~~~~~~~~~~~~~~l~llrl~Rl~ri~~~~~~le~~~~~~~~~~~~~kl 205 (823)
T PLN03192 127 RDRKKIAVRYLST-WFLMDVASTIPFQALAYLITGTVKLNLSYSLLGLLRFWRLRRVKQLFTRLEKDIRFSYFWIRCARL 205 (823)
T ss_pred eCHHHHHHHHHHH-hHHHHHHHHhHHHHHHHHhcCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 9999999999985 99999999999988754321 2346788888888888888888887665553 4688999
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCCCCcccC---CCCCchhhhhhHHHHHHHHHHhhccc--CCcCCCCchhHHHHHHH
Q psy1512 236 IHYLLVIFHWNGCLYHIIYKNDGFGSRNWVYG---DSDTTDVVKQYLQSYYWCTLALTTIG--DLPRPRSKGEYFFVIVQ 310 (679)
Q Consensus 236 ~~~~l~~~H~~aCl~~~i~~~~~~~~~~Wi~~---~~~~~~~~~~Y~~slywa~~tlttvG--di~~p~t~~e~i~~i~~ 310 (679)
++++++++||+||+||+++......+.+|+.. +..+.+++.+|++|+|||++|||||| |+ .|.|..|+++++++
T Consensus 206 i~~~l~~~H~~aC~~y~i~~~~~~~~~~Wi~~~~~~~~~~s~~~~Yi~slYwai~TmtTVGYGDi-~p~t~~E~i~~i~~ 284 (823)
T PLN03192 206 LSVTLFLVHCAGCLYYLIADRYPHQGKTWIGAVIPNFRETSLWIRYISAIYWSITTMTTVGYGDL-HAVNTIEMIFIIFY 284 (823)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcCCCCCchHHHhhhccccCcHHHHHHHHHHHHHHHHhhccCCCc-CCCccchHHHHHHH
Confidence 99999999999999999997665566799863 45678899999999999999999997 99 69999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhhcccCchhHHhhcCCCCC
Q psy1512 311 LLFGLLLFATVLGHVANIVTSVSAARKEFQAKLDGVKTYMRMRRVPNALQVKVIKWFDYLWLTQKCSDEEKAVSCLPGPG 390 (679)
Q Consensus 311 ~i~G~~~~a~~ig~i~~ii~~~~~~~~~~~~~~~~l~~~m~~~~lp~~l~~rv~~y~~~~w~~~~~~~~~~~l~~lp~~~ 390 (679)
|++|++++||++|++++++.+.+.++.+|+++++.+++||+++++|++||+||++|++|.|+.+ +.+++++++.|
T Consensus 285 ml~g~~~~a~~ig~i~~li~~~~~~~~~f~~~~~~~~~ym~~~~lp~~lq~ri~~y~~~~~~~~-~~~~~~~l~~L---- 359 (823)
T PLN03192 285 MLFNLGLTAYLIGNMTNLVVEGTRRTMEFRNSIEAASNFVGRNRLPPRLKDQILAYMCLRFKAE-SLNQQQLIDQL---- 359 (823)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhhc-cccHHHHHHHc----
Confidence 9999999999999999999999999999999999999999999999999999999999999654 57788888777
Q ss_pred CCCcccccCcchhhHHHHHHhhccCccccccCCCccccccCCCcccCcchHHHHHHHhhhhhhccccccccCChhHHHHH
Q psy1512 391 SSSTKLVHGGQYELEEIAIVSNQATPNQVKYGSGPLYMSANGPKVVPDKLKAEIAINVHLDTLKRVEIFQNTEAGFLCEL 470 (679)
Q Consensus 391 ~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~l~~~Lr~ei~~~~~~~~l~~i~lF~~~~~~~l~~L 470 (679)
|+.||.++..+++.+.++++++|++++++++.+|
T Consensus 360 ----------------------------------------------p~~Lr~~i~~~l~~~~l~~~~lF~~~s~~~l~~L 393 (823)
T PLN03192 360 ----------------------------------------------PKSICKSICQHLFLPVVEKVYLFKGVSREILLLL 393 (823)
T ss_pred ----------------------------------------------CHHHHHHHHHHHHHHHHhhCcchhcCCHHHHHHH
Confidence 9999999999999999999999999999999999
Q ss_pred HHhccceEeCCCCEEEEeCCeeeeEEEEeeeeEEEEEehhhHHHHHhhChhHHHHHHHHHHHHHhhhccCcccCCCCCCC
Q psy1512 471 VLRLRPVLFSPGDYICRKGNRRTASVRSVGYSDLFVLSKTDMWDVLKEYPAARVRLESIAVKRLQKYKRTPLEKGISPSP 550 (679)
Q Consensus 471 ~~~l~~~~~~pge~I~~~Gd~r~asv~a~~~~~ly~I~~g~~~~vl~~~p~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 550 (679)
+..++++.|+|||.|+.+||+ .+++|+|.+|.+..+..+. +. +. .-.....|+..++.++
T Consensus 394 ~~~~~~~~~~pge~I~~qge~---------~~~lY~I~~G~V~i~~~~~----~~------e~-~l~~l~~Gd~FGE~~~ 453 (823)
T PLN03192 394 VTKMKAEYIPPREDVIMQNEA---------PDDVYIVVSGEVEIIDSEG----EK------ER-VVGTLGCGDIFGEVGA 453 (823)
T ss_pred HHhhheeeeCCCCEEEECCCC---------CceEEEEEecEEEEEEecC----Cc------ce-eeEEccCCCEecchHH
Confidence 999999999999999999998 7899999888765422110 00 00 0011234444455577
Q ss_pred CCCCCcccccccccccceeecccchhHHHhhcChhHhhhhHHHHHHHhhhcCC
Q psy1512 551 FPGNRRTASVRSVGYSDLFVLSKTDMWDVLKEYPAARVRLESIAVKRLQKYKR 603 (679)
Q Consensus 551 ~~~~~r~atv~A~~~~~l~~L~r~~f~~il~~~P~~~~~l~~~~~~rl~~~~~ 603 (679)
+.+.|+++|++|.+.|+++.|++++|.++++++|++...+...+.++.++.+.
T Consensus 454 l~~~p~~~t~ra~~~s~ll~l~~~~f~~ll~~~p~d~~~i~~~~l~~~~~l~~ 506 (823)
T PLN03192 454 LCCRPQSFTFRTKTLSQLLRLKTSTLIEAMQTRQEDNVVILKNFLQHHKELHD 506 (823)
T ss_pred hcCCCCCCeEEEcccEEEEEEEHHHHHHHHHHhhHHHHHHHHHHHHHhhhhcc
Confidence 88999999999999999999999999999999999999999999887776654
No 4
>KOG0499|consensus
Probab=100.00 E-value=4.9e-65 Score=527.50 Aligned_cols=439 Identities=31% Similarity=0.640 Sum_probs=402.2
Q ss_pred CCceEEcCCC-hhHHHHHHHHHHHHHHHHHHHHHhhhcccccccchhhHHHHHHHHHHHHHHHHH-hhheeEEEECCeEe
Q psy1512 86 NLTFVFDPAG-RFSYYWSMIVSLAFLYNFWVIIYRFAFQEINRESLVIWFCLDYMADLMYVIDIL-IHFRTGYLEDGVLQ 163 (679)
Q Consensus 86 ~~~~vi~P~s-~~~~~W~~i~~~~~~~~~~~ip~~~~F~~~~~~~~~~~~~~~~i~d~~f~~Di~-l~f~t~y~~~g~~v 163 (679)
+.+..|||+. +++..|-+++.++..|++|+||++.+|+....+.+.+|++.|++||+++++|++ ++-|..|...|.+|
T Consensus 215 ~~~~sidp~~~r~Y~~WL~lVtlaf~~N~w~IPlR~sfPyQT~dN~~~Wli~Dy~cDiIYllDmlf~q~Rl~fvrgG~~i 294 (815)
T KOG0499|consen 215 KLPNSIDPYTDRLYLLWLLLVTLAFNWNCWFIPLRLSFPYQTADNIHYWLIADYICDIIYLLDMLFIQPRLQFVRGGDII 294 (815)
T ss_pred CCCcccCcccchHHHHHHHHHHHHHhhceeEEeeeccCCccccccchhhhhHHHHhhHHHHHHHhhhhhhheeeeCceEE
Confidence 3556899999 999999999999999999999999999988888999999999999999999996 67889999999999
Q ss_pred eCHHHHHHHHhcCCCceehhhhccchHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhhhhhccchhHHHHHHHHHHHHHHH
Q psy1512 164 TDSTKLRDHYMNSTTFYIDCLCLLPLDFLYLSIGFNSILRLFRLVKIYRFWAFMDRTERHTNYPNLFRSSSLIHYLLVIF 243 (679)
Q Consensus 164 ~d~~~I~~~Ylks~~f~~Dlls~lP~~~~~~~~~~~~~lrl~rllrl~rl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~ 243 (679)
.|.+..++||+++..|-+|++|++|++++++.++.+.++|++|++|+..+|.++..++.....++++|+++...++++++
T Consensus 295 k~kndtrk~Yl~sr~FklDllsiLPldllY~~~G~~p~wR~~R~lK~~sF~e~~~~Le~i~s~~y~~RV~rT~~Ymlyil 374 (815)
T KOG0499|consen 295 KDKNDTRKHYLTSRKFKLDLLSILPLDLLYLFFGFNPMWRANRMLKYTSFFEFNHHLESIMSKAYIYRVIRTTGYLLYIL 374 (815)
T ss_pred EechHHHHHHHHhhhhhhhHHhhhhHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHhcchhhhhhHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCCCCCCcccCCCCCchhhhhhHHHHHHHHHHhhcccCCcCCCCchhHHHHHHHHHHHHHHHHHHHH
Q psy1512 244 HWNGCLYHIIYKNDGFGSRNWVYGDSDTTDVVKQYLQSYYWCTLALTTIGDLPRPRSKGEYFFVIVQLLFGLLLFATVLG 323 (679)
Q Consensus 244 H~~aCl~~~i~~~~~~~~~~Wi~~~~~~~~~~~~Y~~slywa~~tlttvGdi~~p~t~~e~i~~i~~~i~G~~~~a~~ig 323 (679)
|+.||+||+.+..++.+.+-|++.+.. ..|++|+|||+-|++|+|..+.|.|..|++|..+.-+.|+++||.+||
T Consensus 375 HinacvYY~~SayqglG~~rWVydg~G-----n~YiRCyyfa~kt~~tiG~~P~P~~~~E~Vf~~~~w~mGVFvFslliG 449 (815)
T KOG0499|consen 375 HINACVYYWASAYQGLGTTRWVYDGEG-----NEYIRCYYFAVKTLITIGGLPEPQTLFEIVFQLLNWFMGVFVFSLLIG 449 (815)
T ss_pred hhhHHHHHHHHhhcccccceeEEcCCC-----CceeeehhhHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999987653 479999999999999999888999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhhcccCchhHHhhcCCCCCCCCcccccCcchh
Q psy1512 324 HVANIVTSVSAARKEFQAKLDGVKTYMRMRRVPNALQVKVIKWFDYLWLTQKCSDEEKAVSCLPGPGSSSTKLVHGGQYE 403 (679)
Q Consensus 324 ~i~~ii~~~~~~~~~~~~~~~~l~~~m~~~~lp~~l~~rv~~y~~~~w~~~~~~~~~~~l~~lp~~~~~~~~~~~~~~~~ 403 (679)
+|-.++.+.+..+.+|++.|++.-.||++.+||.+.|.||+.||+|.|.+++..||.++++.|
T Consensus 450 QmRDvi~aAt~nq~~fr~~mD~tl~ym~~~~i~kevqnRVr~WyeyTW~sQr~LDEs~ll~~L----------------- 512 (815)
T KOG0499|consen 450 QMRDVIGAATANQNYFRACMDDTLAYMNNYSIPKEVQNRVRTWYEYTWDSQRMLDESDLLKTL----------------- 512 (815)
T ss_pred HHHHHHhhhhccHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHhhhhhhccccHHHHHHhc-----------------
Confidence 999999999999999999999999999999999999999999999999999999999999887
Q ss_pred hHHHHHHhhccCccccccCCCccccccCCCcccCcchHHHHHHHhhhhhhccccccccCChhHHHHHHHhccceEeCCCC
Q psy1512 404 LEEIAIVSNQATPNQVKYGSGPLYMSANGPKVVPDKLKAEIAINVHLDTLKRVEIFQNTEAGFLCELVLRLRPVLFSPGD 483 (679)
Q Consensus 404 ~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~l~~~Lr~ei~~~~~~~~l~~i~lF~~~~~~~l~~L~~~l~~~~~~pge 483 (679)
|.+||.++++.++..+|.++.+|++|+.+.++.++.+++.+.|.|||
T Consensus 513 ---------------------------------P~klq~dlAi~V~y~~lSKVqLFq~Cdr~mirDmllrLRsV~yLPgD 559 (815)
T KOG0499|consen 513 ---------------------------------PTKLQLDLAIDVNYSILSKVQLFQGCDRQMIRDMLLRLRSVLYLPGD 559 (815)
T ss_pred ---------------------------------chhheeeeeEEeehhhhhHHHHhhhhHHHHHHHHHHHhhceeecCCc
Confidence 99999999999999999999999999999999999999999999999
Q ss_pred EEEEeCCeeeeEEEEeeeeEEEEEehhhHHHHHhhChhHHHHHHHHHHHHHhhh------ccCcccCCCCCCCCCCCCcc
Q psy1512 484 YICRKGNRRTASVRSVGYSDLFVLSKTDMWDVLKEYPAARVRLESIAVKRLQKY------KRTPLEKGISPSPFPGNRRT 557 (679)
Q Consensus 484 ~I~~~Gd~r~asv~a~~~~~ly~I~~g~~~~vl~~~p~~~~~~~~~~~~~~~~~------~~~~~~~g~~~~~~~~~~r~ 557 (679)
+||++||. +.+||+|..| +++++......+. ...+||++. .+.-.|.+|+
T Consensus 560 fVCkKGei---------GkEMYIIk~G--------------qvQVlGGp~~~~Vl~tL~~GsVFGEISL-LaigG~nRRT 615 (815)
T KOG0499|consen 560 FVCKKGEI---------GKEMYIIKHG--------------QVQVLGGPDGTKVLVTLKAGSVFGEISL-LAIGGGNRRT 615 (815)
T ss_pred eeeecccc---------cceeEEeecc--------------eEEEecCCCCCEEEEEecccceeeeeee-eeecCCCccc
Confidence 99999999 8899999555 4444432221111 112333333 2445688999
Q ss_pred cccccccccceeecccchhHHHhhcChhHhhhhHHHHHHHhhhcCC
Q psy1512 558 ASVRSVGYSDLFVLSKTDMWDVLKEYPAARVRLESIAVKRLQKYKR 603 (679)
Q Consensus 558 atv~A~~~~~l~~L~r~~f~~il~~~P~~~~~l~~~~~~rl~~~~~ 603 (679)
|+|+|.++|.|++|+++|+.+++..||+....+...+...++....
T Consensus 616 AnV~a~Gf~nLfvL~KkdLneil~~YP~sq~iLrkkAr~llk~nak 661 (815)
T KOG0499|consen 616 ANVVAHGFANLFVLDKKDLNEILVHYPDSQRILRKKARVLLKQNAK 661 (815)
T ss_pred hhhhhcccceeeEecHhHHHHHHHhCccHHHHHHHHHHHHHHhccc
Confidence 9999999999999999999999999999999888888775555443
No 5
>KOG0501|consensus
Probab=100.00 E-value=9.2e-60 Score=486.32 Aligned_cols=442 Identities=21% Similarity=0.430 Sum_probs=362.6
Q ss_pred hhccCCCCCCCCceEEcCCChhHHHHHHHHHHHHHHHHHHHHHhhhcccccccchhhHHHHHHHHHHHHHHHHHhhheeE
Q psy1512 76 AERYPRSSGPNLTFVFDPAGRFSYYWSMIVSLAFLYNFWVIIYRFAFQEINRESLVIWFCLDYMADLMYVIDILIHFRTG 155 (679)
Q Consensus 76 ~~~~~~~~~~~~~~vi~P~s~~~~~W~~i~~~~~~~~~~~ip~~~~F~~~~~~~~~~~~~~~~i~d~~f~~Di~l~f~t~ 155 (679)
.+.++....+..+.||.+++.|+.+||++++++.+|+++.+||.++|..... ....|..+|.++|++|++||++||+|.
T Consensus 195 lPQYrQEaPKTpPHIiLHYcaFKt~WDWvIL~LTFYTAimVPyNvaFKnk~~-~~vs~lvvDSiVDVIF~vDIvLNFHTT 273 (971)
T KOG0501|consen 195 LPQYRQEAPKTPPHIILHYCAFKTIWDWVILILTFYTAIMVPYNVAFKNKQR-NNVSWLVVDSIVDVIFFVDIVLNFHTT 273 (971)
T ss_pred chhhhhcCCCCCCeEEEeeehhhhHHHHHHHHHHHHHHheeeeeeeeccccc-CceeEEEecchhhhhhhhhhhhhccee
Confidence 4455556667778899999999999999999999999999999999986543 345688899999999999999999999
Q ss_pred EEEC-CeEeeCHHHHHHHHhcCCCceehhhhccchHHHHHhh----hhHHHHHHHHHHHHHHHHHHHHhhhhhccchhHH
Q psy1512 156 YLED-GVLQTDSTKLRDHYMNSTTFYIDCLCLLPLDFLYLSI----GFNSILRLFRLVKIYRFWAFMDRTERHTNYPNLF 230 (679)
Q Consensus 156 y~~~-g~~v~d~~~I~~~Ylks~~f~~Dlls~lP~~~~~~~~----~~~~~lrl~rllrl~rl~~~~~~~~~~~~~~~~~ 230 (679)
|+-. |++|.||+.|+.+|+|+ ||++|++|++|++++...- +..+++..++.+|++|+-+..+++..+..|....
T Consensus 274 FVGPgGEVvsdPkvIRmNYlKs-WFvIDLLSCLPYDi~naF~~~degI~SLFSaLKVVRLLRLGRVaRKLD~YlEYGAA~ 352 (971)
T KOG0501|consen 274 FVGPGGEVVSDPKVIRMNYLKS-WFVIDLLSCLPYDIFNAFERDDEGIGSLFSALKVVRLLRLGRVARKLDHYLEYGAAV 352 (971)
T ss_pred eecCCCceecChhHHhHHHHHH-HHHHHHHhcccHHHHHHhhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 9974 89999999999999996 9999999999999987642 2234444444444444445555555666665544
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCC-------CCCCCcccCC-----------C-------CCchhhhhhHHHHHHH
Q psy1512 231 RSSSLIHYLLVIFHWNGCLYHIIYKNDG-------FGSRNWVYGD-----------S-------DTTDVVKQYLQSYYWC 285 (679)
Q Consensus 231 ~~~~l~~~~l~~~H~~aCl~~~i~~~~~-------~~~~~Wi~~~-----------~-------~~~~~~~~Y~~slywa 285 (679)
++.+++...+++||.||+||.|+..+- ...++|++.- . ...+-...|+.|+||.
T Consensus 353 -LvLLlC~y~lvAHWlACiWysIGd~ev~~~~~n~i~~dsWL~kLa~~~~tpY~~~~s~~~~~~gGPSr~S~YissLYfT 431 (971)
T KOG0501|consen 353 -LVLLLCVYGLVAHWLACIWYSIGDYEVRDEMDNTIQPDSWLWKLANDIGTPYNYNLSNKGTLVGGPSRTSAYISSLYFT 431 (971)
T ss_pred -HHHHHHHHHHHHHHHHHhheeccchheecccccccccchHHHHHHhhcCCCceeccCCCceeecCCcccceehhhhhhh
Confidence 455677788899999999999998542 2346897531 0 1123456899999999
Q ss_pred HHHhhccc--CCcCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHH
Q psy1512 286 TLALTTIG--DLPRPRSKGEYFFVIVQLLFGLLLFATVLGHVANIVTSVSAARKEFQAKLDGVKTYMRMRRVPNALQVKV 363 (679)
Q Consensus 286 ~~tlttvG--di~~p~t~~e~i~~i~~~i~G~~~~a~~ig~i~~ii~~~~~~~~~~~~~~~~l~~~m~~~~lp~~l~~rv 363 (679)
++.||||| ++ .|.|+.|++|++++|++|.++||.++|+++.+++++.+....|++.++.+.+||+-+.+|+.|.+||
T Consensus 432 Mt~mttvGFGNi-A~~TD~EKiF~v~mMii~aLLYAtIFG~vTTI~QQM~s~T~rYHeMlnnVReFlKL~evPK~LsERV 510 (971)
T KOG0501|consen 432 MTCMTTVGFGNI-APNTDNEKIFGVCMMIIGALLYATIFGHVTTIIQQMTSNTNRYHEMLNNVREFLKLYEVPKGLSERV 510 (971)
T ss_pred hhhhhccccccc-CCCccHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhccHHHHHHH
Confidence 99999998 77 8999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhcccCchhHHhhcCCCCCCCCcccccCcchhhHHHHHHhhccCccccccCCCccccccCCCcccCcchHHH
Q psy1512 364 IKWFDYLWLTQKCSDEEKAVSCLPGPGSSSTKLVHGGQYELEEIAIVSNQATPNQVKYGSGPLYMSANGPKVVPDKLKAE 443 (679)
Q Consensus 364 ~~y~~~~w~~~~~~~~~~~l~~lp~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~l~~~Lr~e 443 (679)
.+|.--.|...+|.|.+++|..- |..+|++
T Consensus 511 MDYvVSTWaMtkGiDTeKVL~~C--------------------------------------------------PKDMkAD 540 (971)
T KOG0501|consen 511 MDYVVSTWAMTKGIDTEKVLGYC--------------------------------------------------PKDMKAD 540 (971)
T ss_pred HHHHHHHhhhhcCcCHHHHhhhC--------------------------------------------------ccccccc
Confidence 99999999999999999998765 8899999
Q ss_pred HHHHhhhhhhccccccccCChhHHHHHHHhccceEeCCCCEEEEeCCeeeeEEEEeeeeEEEEEehhhHHHHHhhChhHH
Q psy1512 444 IAINVHLDTLKRVEIFQNTEAGFLCELVLRLRPVLFSPGDYICRKGNRRTASVRSVGYSDLFVLSKTDMWDVLKEYPAAR 523 (679)
Q Consensus 444 i~~~~~~~~l~~i~lF~~~~~~~l~~L~~~l~~~~~~pge~I~~~Gd~r~asv~a~~~~~ly~I~~g~~~~vl~~~p~~~ 523 (679)
|..|++++..+..|.|+-.++++++.|+..++..++.|||.|++.||. .+.+.|+..|.+
T Consensus 541 ICVHLNRKVFnEHpaFRLASDGCLRaLAm~f~~~H~APGDLlYHtGES---------vDaLcFvVsGSL----------- 600 (971)
T KOG0501|consen 541 ICVHLNRKVFNEHPAFRLASDGCLRALAMEFQTNHCAPGDLLYHTGES---------VDALCFVVSGSL----------- 600 (971)
T ss_pred eeeecchhhhccCcceeeccchhHHHHHHHHHhccCCCcceeeecCCc---------cceEEEEEecce-----------
Confidence 999999999999999999999999999999999999999999999997 677888855543
Q ss_pred HHHHHHHHHHHhhhccCcccCCCCC-CCCCCCCcccccccccccceeecccchhHHHhhcChhHhhhhHHHH
Q psy1512 524 VRLESIAVKRLQKYKRTPLEKGISP-SPFPGNRRTASVRSVGYSDLFVLSKTDMWDVLKEYPAARVRLESIA 594 (679)
Q Consensus 524 ~~~~~~~~~~~~~~~~~~~~~g~~~-~~~~~~~r~atv~A~~~~~l~~L~r~~f~~il~~~P~~~~~l~~~~ 594 (679)
+++.++........+..+|+.. -.-+-....|+|||.|+|.|..|.|+.+.++|.-|..++..+.+++
T Consensus 601 ---EVIQDDEVVAILGKGDVFGD~FWK~~t~~qs~ANVRALTYcDLH~IKrd~Ll~VLdFYtAFanSFaRNl 669 (971)
T KOG0501|consen 601 ---EVIQDDEVVAILGKGDVFGDEFWKENTLGQSAANVRALTYCDLHMIKRDKLLKVLDFYTAFANSFARNL 669 (971)
T ss_pred ---EEeecCcEEEEeecCccchhHHhhhhhhhhhhhhhhhhhhhhhhHHhHHHHHHHHHHHHHHHHHhhhce
Confidence 3333332221111122233320 0012235678999999999999999999999999999887766654
No 6
>KOG0614|consensus
Probab=99.87 E-value=2.6e-23 Score=215.49 Aligned_cols=202 Identities=23% Similarity=0.291 Sum_probs=152.7
Q ss_pred CcchHHHHHHHhhhhhhccccccccCChhHHHHHHHhccceEeCCCCEEEEeCCeeeeEEEEeeeeEEEEEehhhHHHHH
Q psy1512 437 PDKLKAEIAINVHLDTLKRVEIFQNTEAGFLCELVLRLRPVLFSPGDYICRKGNRRTASVRSVGYSDLFVLSKTDMWDVL 516 (679)
Q Consensus 437 ~~~Lr~ei~~~~~~~~l~~i~lF~~~~~~~l~~L~~~l~~~~~~pge~I~~~Gd~r~asv~a~~~~~ly~I~~g~~~~vl 516 (679)
|..=|..-..++.++.+.+..+.++++...+.+++..|.++.|.+|..|+++||+ ++.+|++
T Consensus 140 ~~~~Kd~~~k~lI~dAi~~NdFLknLd~~Qi~e~v~~Myp~~~~~gs~IIrege~---------Gs~~yV~--------- 201 (732)
T KOG0614|consen 140 PRYNKDVGAKQLIRDAIQKNDFLKNLDASQIKELVDCMYPVEYRAGSWIIREGEP---------GSHLYVS--------- 201 (732)
T ss_pred ccccCCccHHHHHHHHHHhhHHHHhhhHHHHHHHHHhhCcccccCCcEEEecCCC---------CceEEEe---------
Confidence 3333444456777899999999999999999999999999999999999999999 8999999
Q ss_pred hhChhHHHHHHHHHHHHHhhhccCcccCCCCCCCCCCCCcccccccccccceeecccchhHHHhhcC-------------
Q psy1512 517 KEYPAARVRLESIAVKRLQKYKRTPLEKGISPSPFPGNRRTASVRSVGYSDLFVLSKTDMWDVLKEY------------- 583 (679)
Q Consensus 517 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~r~atv~A~~~~~l~~L~r~~f~~il~~~------------- 583 (679)
..|.++++...++... ...+...++.+.+++++|+|||+|+++|.+|.|+|+.|+.++...
T Consensus 202 -----aeG~~~V~~~g~ll~~-m~~gtvFGELAILynctRtAsV~alt~~~lWaidR~vFq~IM~~tg~~r~~~~~~fLr 275 (732)
T KOG0614|consen 202 -----AEGELQVSREGKLLGK-MGAGTVFGELAILYNCTRTASVRALTDVRLWAIDREVFQAIMMRTGLERHEQYMNFLR 275 (732)
T ss_pred -----ecceEEEeeCCeeeec-cCCchhhhHHHHHhCCcchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555443222111 112233334577899999999999999999999999998876432
Q ss_pred --hhHhh-------hhHHHHHHHhhhcCCCceecCCCCceEEEEEeeEEEEEecC----CceEeEEcCCCCeeeeecccc
Q psy1512 584 --PAARV-------RLESIAVKRLQKYKRTPLEKGEVGKEMYIVNRGRLQVVADN----GKTVLATLRAGSYFGEISILN 650 (679)
Q Consensus 584 --P~~~~-------~l~~~~~~rl~~~~~~ii~~Ge~g~~~yiI~~G~v~v~~~~----~~~~i~~L~~G~~FGE~all~ 650 (679)
|.+.. ++.+.+.+.......+|+|||+.|+.||||.+|.|.|++.+ .++.+++|++||||||+||+.
T Consensus 276 sv~~~q~l~Ee~L~KiaD~le~~~Yd~g~yIirqge~G~~ffii~~G~V~vtq~~e~~~q~~~lr~l~kGd~FGE~al~~ 355 (732)
T KOG0614|consen 276 SVPLFQNLPEELLLKIADVLEEEYYDAGEYIIRQGEKGDTFFIISKGTVKVTQQDEGSTQPQELRTLNKGDYFGERALLG 355 (732)
T ss_pred hhhhhccCCHHHHHHHHHHHHHHhhcCCceEEeecCCCCeEEEEecceEEEeecCCCCCchhHHhhccccchhhHHHhhc
Confidence 22222 22222222334444499999999999999999999999732 456799999999999999999
Q ss_pred CC--ceEEEEeeee
Q psy1512 651 MG--TAGTNLIQEC 662 (679)
Q Consensus 651 ~~--~~t~~a~~~~ 662 (679)
.+ +|++.|.+..
T Consensus 356 edvRtAniia~~~g 369 (732)
T KOG0614|consen 356 EDVRTANIIAQAPG 369 (732)
T ss_pred cCccchhhhccCCC
Confidence 99 7777776543
No 7
>KOG1113|consensus
Probab=99.83 E-value=1.1e-21 Score=195.87 Aligned_cols=187 Identities=16% Similarity=0.248 Sum_probs=147.8
Q ss_pred hhhhhhccccccccCChhHHHHHHHhccceEeCCCCEEEEeCCeeeeEEEEeeeeEEEEEehhhHHHHHhhChhHHHHHH
Q psy1512 448 VHLDTLKRVEIFQNTEAGFLCELVLRLRPVLFSPGDYICRKGNRRTASVRSVGYSDLFVLSKTDMWDVLKEYPAARVRLE 527 (679)
Q Consensus 448 ~~~~~l~~i~lF~~~~~~~l~~L~~~l~~~~~~pge~I~~~Gd~r~asv~a~~~~~ly~I~~g~~~~vl~~~p~~~~~~~ 527 (679)
...+++++.-+|++++++.+.++...|.++.+..|+.|++|||. ++.+|+|.+|.+..+..
T Consensus 119 ~L~~a~r~~~LF~~Ld~eq~~~v~dam~~~~v~~G~~Vi~qGde---------Gd~fYvI~kGt~dVyv~---------- 179 (368)
T KOG1113|consen 119 RLEEAFRKNLLFANLDDEQLSQVLDAMFEKRVKAGETVIKQGDE---------GDNFYVIDKGTFDVYVN---------- 179 (368)
T ss_pred HHHHHHHhccccccCCHHHHHHHHHhhceeeecCCcEEEecCCc---------CCcEEEEecceEEEEEC----------
Confidence 34678889999999999999999999999999999999999998 88999999997754432
Q ss_pred HHHHHHHhhhccCcccCCCCCCCCCCCCcccccccccccceeecccchhHHHhhcChhHhhhhHHHHHH-----------
Q psy1512 528 SIAVKRLQKYKRTPLEKGISPSPFPGNRRTASVRSVGYSDLFVLSKTDMWDVLKEYPAARVRLESIAVK----------- 596 (679)
Q Consensus 528 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~r~atv~A~~~~~l~~L~r~~f~~il~~~P~~~~~l~~~~~~----------- 596 (679)
.... .....++.+++.+++++.||.||+.|.+.+.+|.|+|..|.+++...-.-..+|.....+
T Consensus 180 ----~~~v-~~~~~g~sFGElALmyn~PRaATv~a~t~~klWgldr~SFrrIi~~s~~kkrkMy~~~l~s~pil~~l~k~ 254 (368)
T KOG1113|consen 180 ----GTYV-TTYSPGGSFGELALMYNPPRAATVVAKSLKKLWGLDRTSFRRIIMKSCIKKRKMYEPFLESVPILESLEKL 254 (368)
T ss_pred ----CeEE-eeeCCCCchhhhHhhhCCCcccceeeccccceEEEeeceeEEEeeccchhhhhhhhhhhhcchhhHHHHHH
Confidence 1111 112344555556899999999999999999999999999998886665554444443322
Q ss_pred -----------HhhhcCCCceecCCCCceEEEEEeeEEEEEecCCceEeEEcCCCCeeeeeccccCC--ceEEEEe
Q psy1512 597 -----------RLQKYKRTPLEKGEVGKEMYIVNRGRLQVVADNGKTVLATLRAGSYFGEISILNMG--TAGTNLI 659 (679)
Q Consensus 597 -----------rl~~~~~~ii~~Ge~g~~~yiI~~G~v~v~~~~~~~~i~~L~~G~~FGE~all~~~--~~t~~a~ 659 (679)
...+.+..|++||+.|+.||||.+|+|+|....+..++ .+++||||||.||+.+. .|||.|.
T Consensus 255 er~kv~dal~~k~y~~G~~Vi~qg~~ge~f~~i~eGEvdv~~~~~~v~v-kl~~~dyfge~al~~~~pr~Atv~a~ 329 (368)
T KOG1113|consen 255 ERAKVADALGTKSYKDGERVIVQGDQGEHFYIIEEGEVDVLKKRDGVEV-KLKKGDYFGELALLKNLPRAATVVAK 329 (368)
T ss_pred HHHhhhcccceeeccCCceEEeccCCcceEEEecccccchhhccCCeEE-EechhhhcchHHHHhhchhhceeecc
Confidence 11112228899999999999999999999874444556 99999999999999999 6666665
No 8
>KOG3713|consensus
Probab=99.75 E-value=3.3e-17 Score=171.69 Aligned_cols=190 Identities=16% Similarity=0.260 Sum_probs=137.0
Q ss_pred HHHHHHHHHHHHHHHHHhhheeEEEECCeEeeCHHHHHHHHhcCCCceehhhhccchHHHHHhh--h------hH---HH
Q psy1512 133 WFCLDYMADLMYVIDILIHFRTGYLEDGVLQTDSTKLRDHYMNSTTFYIDCLCLLPLDFLYLSI--G------FN---SI 201 (679)
Q Consensus 133 ~~~~~~i~d~~f~~Di~l~f~t~y~~~g~~v~d~~~I~~~Ylks~~f~~Dlls~lP~~~~~~~~--~------~~---~~ 201 (679)
+..++.+|.++|-++++++|..+ .-+.+++|++-.++|++|++||++-.... . .. ..
T Consensus 242 l~~vE~vCi~WFT~E~llR~~~~------------P~k~~F~k~pLNIIDllAIlPFYielll~~~~~~~~~~l~~~~~v 309 (477)
T KOG3713|consen 242 LTYVETVCIAWFTFEYLLRFLVA------------PNKLEFFKSPLNIIDLLAILPFYLELLLTLFGGESLKELENAGLV 309 (477)
T ss_pred hHHHHHHHHHHHHHHHHHHHHcC------------chHHHHHhCcchHHHHHHHHHHHHHHHHHHhccchHHHHhhhhhh
Confidence 46799999999999999999877 34788999999999999999998654321 1 11 23
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhccchhH-----HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCcccCCCCCchhhh
Q psy1512 202 LRLFRLVKIYRFWAFMDRTERHTNYPNL-----FRSSSLIHYLLVIFHWNGCLYHIIYKNDGFGSRNWVYGDSDTTDVVK 276 (679)
Q Consensus 202 lrl~rllrl~rl~~~~~~~~~~~~~~~~-----~~~~~l~~~~l~~~H~~aCl~~~i~~~~~~~~~~Wi~~~~~~~~~~~ 276 (679)
+|++|++|++|++++-+........... -.+..+++++.+-+-+||-+-|++...++ .+.++
T Consensus 310 vrvlR~lRI~RI~KLaRhS~GLr~lg~Tlr~S~~ElglLllfL~~GI~iFStlvY~~Ek~~~-------------~~~Ft 376 (477)
T KOG3713|consen 310 VRVLRVLRILRIFKLARHSTGLRTLGLTLRRSYRELGLLLLFLAVGIVIFSTLVYFAEKDEP-------------DTKFT 376 (477)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCC-------------CCCCc
Confidence 4555555555555544322111111111 12344555566666677888777765542 12267
Q ss_pred hhHHHHHHHHHHhhccc--CCcCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1512 277 QYLQSYYWCTLALTTIG--DLPRPRSKGEYFFVIVQLLFGLLLFATVLGHVANIVTSVSAARKEFQAKLDGVKT 348 (679)
Q Consensus 277 ~Y~~slywa~~tlttvG--di~~p~t~~e~i~~i~~~i~G~~~~a~~ig~i~~ii~~~~~~~~~~~~~~~~l~~ 348 (679)
....++|||++|||||| |+ .|.|..+++++..+++.|+++.|+.|..|.+-+...++..++.++...+=+.
T Consensus 377 SIPa~~WWaiVTMTTVGYGDm-~P~T~~Gklvas~cil~GVLvlAlPItiIv~nF~~~y~~~k~~~~~~~~~~~ 449 (477)
T KOG3713|consen 377 SIPAGFWWAVVTMTTVGYGDM-VPVTVLGKLVASLCILCGVLVLALPITIIVNNFSMYYSELKAREKAPKRREA 449 (477)
T ss_pred cccchhheeeEEEeeecccCc-cccccchHHHHHHHHHHhHHHhhcchHhHhhhHHHHHHHHHHHHHhhhhhcc
Confidence 78889999999999998 99 6999999999999999999999999999999998888777666554444333
No 9
>KOG1545|consensus
Probab=99.73 E-value=8.3e-20 Score=181.18 Aligned_cols=284 Identities=13% Similarity=0.181 Sum_probs=168.7
Q ss_pred ecccCCCCCCCCCCCCCCCCCCChhhhhhccCCCcccccccccccCCCccchhhhhhhhccCCCCCCCCceEE--cCCCh
Q psy1512 19 NISSTPSEFDLPKAGGICRSRRDSHVRQAKLAPLTSNLTQDKCFHGNTGADCAVHRVAERYPRSSGPNLTFVF--DPAGR 96 (679)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi--~P~s~ 96 (679)
-+||.+|+.++|. .+|.|-+..+.++.++++++-....-+++.-... .+.+|+...+..-|.+ .|+|.
T Consensus 118 YyYQSGGRlrRPv-----nVPlDiF~eEirFyqlG~eame~FredEG~~~~e-----E~plP~n~fqRqvWlLfEYPeSS 187 (507)
T KOG1545|consen 118 YYYQSGGRLRRPV-----NVPLDIFLEEIRFYQLGDEAMERFREDEGFIKPE-----ERPLPRNEFQRQVWLLFEYPESS 187 (507)
T ss_pred EEeecCceecCCc-----cccHHHHHHHHHHHHhhHHHHHHHHhhcCCCCcc-----cccCCcchHHhhhhheeeccccc
Confidence 5799999999999 8999999999999999886633222222221111 1223332222112221 34433
Q ss_pred hHH-HHHHHHHHHHHHHH-----HHHHHh-------hhcc-----c-c------------cccchhhHHHHHHHHHHHHH
Q psy1512 97 FSY-YWSMIVSLAFLYNF-----WVIIYR-------FAFQ-----E-I------------NRESLVIWFCLDYMADLMYV 145 (679)
Q Consensus 97 ~~~-~W~~i~~~~~~~~~-----~~ip~~-------~~F~-----~-~------------~~~~~~~~~~~~~i~d~~f~ 145 (679)
--. .-.++-++++++++ =++|-. -+|+ . . +......+++++.+|.+||-
T Consensus 188 ~~AR~iAiVSVlVIliSIviFClETlPefrderd~~~~~~~~~~~~~~n~~~~~~~~~~~~~~f~dPFFiVEt~CIiWFt 267 (507)
T KOG1545|consen 188 GPARIIAIVSVLVILISIVIFCLETLPEFRDERDLTGHFPAGTGGGVMNPTSGPELLDLGDTKFTDPFFIVETLCIIWFT 267 (507)
T ss_pred CCeeeeeehhHHHHHHHHHHHHHHhCchhhhhccccccccccCCCcccCCCCCcccccccccccCCchHhHHHHHHHHHh
Confidence 211 11111111111111 122311 0010 0 0 00122346789999999999
Q ss_pred HHHHhhheeEEEECCeEeeCHHHHHHHHhcCCCceehhhhccchHHHHHhhh--------------hHHHHHHHHHHHHH
Q psy1512 146 IDILIHFRTGYLEDGVLQTDSTKLRDHYMNSTTFYIDCLCLLPLDFLYLSIG--------------FNSILRLFRLVKIY 211 (679)
Q Consensus 146 ~Di~l~f~t~y~~~g~~v~d~~~I~~~Ylks~~f~~Dlls~lP~~~~~~~~~--------------~~~~lrl~rllrl~ 211 (679)
++++++|..+.- +.-+.|+-..++|+++++|+.+.+..-. ...+||++||+|++
T Consensus 268 fEllvRf~aCPs------------K~~Ff~nimNiIDiVaI~PyFitlgtela~q~g~g~~gqqaMSlAILRViRLVRVF 335 (507)
T KOG1545|consen 268 FELLVRFFACPS------------KATFFRNIMNIIDIVAIIPYFITLGTELAEQQGGGGQGQQAMSLAILRVIRLVRVF 335 (507)
T ss_pred HHHHHHHhcCcc------------HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhcCCccchhhhhHHHHHHHHHHHHh
Confidence 999999988732 3445555577999999999987654210 12367888888887
Q ss_pred HHHHHHHhhhhhccch----hHHH-HHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCcccCCCCCchhhhhhHHHHHHHH
Q psy1512 212 RFWAFMDRTERHTNYP----NLFR-SSSLIHYLLVIFHWNGCLYHIIYKNDGFGSRNWVYGDSDTTDVVKQYLQSYYWCT 286 (679)
Q Consensus 212 rl~~~~~~~~~~~~~~----~~~~-~~~l~~~~l~~~H~~aCl~~~i~~~~~~~~~~Wi~~~~~~~~~~~~Y~~slywa~ 286 (679)
|++++.+......... .-++ +..+++++++-+.+++...|+... .+.++.+....+|+|||+
T Consensus 336 RIFKLSRHSkGLQILGqTl~aSmrElgLLIFFlfIgviLFsSavYFAEa-------------de~~S~F~SIPdaFWwav 402 (507)
T KOG1545|consen 336 RIFKLSRHSKGLQILGQTLRASMRELGLLIFFLFIGVILFSSAVYFAEA-------------DEPESHFSSIPDAFWWAV 402 (507)
T ss_pred hheeeccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhceeeeeec-------------CCCccCCCcCcccceEEE
Confidence 7776654322211111 1222 333344444333344443332211 123456777889999999
Q ss_pred HHhhccc--CCcCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1512 287 LALTTIG--DLPRPRSKGEYFFVIVQLLFGLLLFATVLGHVANIVTSVSAARKE 338 (679)
Q Consensus 287 ~tlttvG--di~~p~t~~e~i~~i~~~i~G~~~~a~~ig~i~~ii~~~~~~~~~ 338 (679)
+|||||| |+ .|.|..++++..++.+.|++..|..+..|.+-+.-.+.++.+
T Consensus 403 VTMTTVGYGDm-~P~TvgGKIVGslCAiaGVLTiALPVPVIVsNFnyFYhrEte 455 (507)
T KOG1545|consen 403 VTMTTVGYGDM-VPVTVGGKIVGSLCAIAGVLTIALPVPVIVSNFNYFYHRETE 455 (507)
T ss_pred EEEEeeccccc-eecccCceehhhHHhhhhheEecccccEEEecccceeecccc
Confidence 9999997 99 699999999999999999999999998888776555544443
No 10
>KOG1419|consensus
Probab=99.44 E-value=1e-12 Score=138.11 Aligned_cols=252 Identities=17% Similarity=0.265 Sum_probs=162.1
Q ss_pred EEcCCChhHHHHHHHHHHHHHHHHHHHHHhhhcccccccchhhHHHHHHHHHHHHHHHHHhhheeEE----EE--CCeEe
Q psy1512 90 VFDPAGRFSYYWSMIVSLAFLYNFWVIIYRFAFQEINRESLVIWFCLDYMADLMYVIDILIHFRTGY----LE--DGVLQ 163 (679)
Q Consensus 90 vi~P~s~~~~~W~~i~~~~~~~~~~~ip~~~~F~~~~~~~~~~~~~~~~i~d~~f~~Di~l~f~t~y----~~--~g~~v 163 (679)
.=.|.+.-...+..++++++ +.++++.....+++.........+++++++.++|.++++++...+= |. .|
T Consensus 85 LERPrGWkaf~YH~~VFllV-l~CLILsV~STi~e~~~~a~~~L~~LEiv~IV~Fg~EfivRlWSAGC~~rYrG~~G--- 160 (654)
T KOG1419|consen 85 LERPRGWKAFLYHFFVFLLV-LSCLILSVLSTIEEYEKLASGILYILEIVMIVFFGLEFIVRLWSAGCCCRYRGWYG--- 160 (654)
T ss_pred HhCCCcchHHHHHHHHHHHH-HHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccee---
Confidence 33465554555555554443 4444444333444332223334467999999999999999986541 11 23
Q ss_pred eCHHHHHHHHhcCCCceehhhhccchHHHHHhhh------hHHHHHHHHHHHHHHHHHHHHhhhhhccchhH----HHHH
Q psy1512 164 TDSTKLRDHYMNSTTFYIDCLCLLPLDFLYLSIG------FNSILRLFRLVKIYRFWAFMDRTERHTNYPNL----FRSS 233 (679)
Q Consensus 164 ~d~~~I~~~Ylks~~f~~Dlls~lP~~~~~~~~~------~~~~lrl~rllrl~rl~~~~~~~~~~~~~~~~----~~~~ 233 (679)
+.+|.+++..++|++.++.-.... .++ ..+.+|-+|++++.|+++.-++-........+ -+-+
T Consensus 161 ------RLrFarkp~cvIDiivi~Asi~vl-~~g~qG~vfatSalrslRFlQILRmlr~DRrggTWKLLGSvV~aH~~EL 233 (654)
T KOG1419|consen 161 ------RLRFARKPFCVIDIIVIIASIAVL-AAGSQGNVFATSALRSLRFLQILRMLRMDRRGGTWKLLGSVVYAHSKEL 233 (654)
T ss_pred ------eEEeecCCceEEEEeeeeeeeeEE-EecCccceeehhhhhhhHHHHHHHHHHhhccCchhhhhhhhhhhhHHHH
Confidence 345777888999998654432221 111 23567888888888877765443222111111 1223
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCCCCCcccCCCCCchhhhhhHHHHHHHHHHhhccc--CCcCCCCchhHHHHHHHH
Q psy1512 234 SLIHYLLVIFHWNGCLYHIIYKNDGFGSRNWVYGDSDTTDVVKQYLQSYYWCTLALTTIG--DLPRPRSKGEYFFVIVQL 311 (679)
Q Consensus 234 ~l~~~~l~~~H~~aCl~~~i~~~~~~~~~~Wi~~~~~~~~~~~~Y~~slywa~~tlttvG--di~~p~t~~e~i~~i~~~ 311 (679)
...+++-++.-+++.++.++...+..+. .....+..|.+|+||.++|+||+| |. +|.|..+++++.++.
T Consensus 234 iTt~YIGFL~LIfsSflVYLaEKd~~~e--------~~n~~F~TyADALWWG~ITltTIGYGDk-~P~TWlGr~laa~fs 304 (654)
T KOG1419|consen 234 ITTWYIGFLVLIFSSFLVYLAEKDAQGE--------GTNDEFPTYADALWWGVITLTTIGYGDK-TPQTWLGRLLAACFS 304 (654)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcccccc--------cccccchhHHHHHHhhheeEEeeccCCc-CcccchhHHHHHHHH
Confidence 3456777777777777777665542221 223458899999999999999997 99 799999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q psy1512 312 LFGLLLFATVLGHVANIVTSVSAARKEFQAKLDGVKTYMRMRRVPNALQVKVIKWFD 368 (679)
Q Consensus 312 i~G~~~~a~~ig~i~~ii~~~~~~~~~~~~~~~~l~~~m~~~~lp~~l~~rv~~y~~ 368 (679)
++|+.+||..-|.+++-+.-.-++++ .=++|-++++.-..|.+-.-+||.
T Consensus 305 ligiSFFALPAGILGSGfALKVQeq~-------RQKHf~rrr~pAA~LIQc~WR~ya 354 (654)
T KOG1419|consen 305 LIGISFFALPAGILGSGFALKVQEQH-------RQKHFNRRRNPAASLIQCAWRYYA 354 (654)
T ss_pred HHHHHHHhcccccccchhhhhhHHHH-------HHHHHHhhcchHHHHHHHHHHHHh
Confidence 99999999999999987755433221 124566777777777777766654
No 11
>PF00520 Ion_trans: Ion transport protein calcium channel signature potassium channel signature sodium channel signature; InterPro: IPR005821 This group of proteins is found in sodium, potassium, and calcium ion channels proteins. The proteins have 6 transmembrane helices in which the last two helices flank a loop which determines ion selectivity. In some Na channels proteins the domain is repeated four times, whereas in others (e.g. K channels) the protein forms a tetramer in the membrane. A bacterial structure of the protein is known for the last two helices but is not included in the Pfam family due to it lacking the first four helices. ; GO: 0005216 ion channel activity, 0006811 ion transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3VMX_B 1QG9_A 1UJL_A 2LE7_A 2LCM_A 3A2A_A 3RW0_A 4EKW_A 3RVY_B 3RVZ_B ....
Probab=99.37 E-value=1.3e-12 Score=127.60 Aligned_cols=178 Identities=19% Similarity=0.356 Sum_probs=120.3
Q ss_pred HHHHHHHHHHHHHHhhheeEEEECCeEeeCHHHHHHHHhcCCCceehhhhccchHHHHHhh--h------hHHHHHHHHH
Q psy1512 136 LDYMADLMYVIDILIHFRTGYLEDGVLQTDSTKLRDHYMNSTTFYIDCLCLLPLDFLYLSI--G------FNSILRLFRL 207 (679)
Q Consensus 136 ~~~i~d~~f~~Di~l~f~t~y~~~g~~v~d~~~I~~~Ylks~~f~~Dlls~lP~~~~~~~~--~------~~~~lrl~rl 207 (679)
+|.+++++|.+|+++++++.... +++|++++|+++|+++++|........ . ....+|++|+
T Consensus 2 ~~~~~~~~f~~e~~l~~~~~~~~-----------~~~y~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 70 (200)
T PF00520_consen 2 LEIIFDVIFILEIVLRFFALGFK-----------RRRYFRSWWNWFDFISVIPSIVSVILRSYGSASAQSLLRIFRLLRL 70 (200)
T ss_dssp HHHHHHHHHHHHHHHHHHTCCCG------------GCCCCSHHHHHHHHHHHHHCCHHCCHCSS--HHCHCHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHhccH-----------HHHHhcChhhcccccccccccccccccccccccccceEEEEEeecc
Confidence 78999999999999999866332 688999989999999999996554322 1 1234444444
Q ss_pred HHHHHHHHHHHhhhhhc--cchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCC--ccc-CCCCCchhhhhhHHHH
Q psy1512 208 VKIYRFWAFMDRTERHT--NYPNLFRSSSLIHYLLVIFHWNGCLYHIIYKNDGFGSRN--WVY-GDSDTTDVVKQYLQSY 282 (679)
Q Consensus 208 lrl~rl~~~~~~~~~~~--~~~~~~~~~~l~~~~l~~~H~~aCl~~~i~~~~~~~~~~--Wi~-~~~~~~~~~~~Y~~sl 282 (679)
+|+.|+.+..+.+.... ......++.+.+..++++.|++||+++.+.......... +.. .+....+.++.|..|+
T Consensus 71 ~R~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~a~~~~~lf~~~~~~~~~~~~~~~~~~~~~~~f~~~~~s~ 150 (200)
T PF00520_consen 71 LRLLRLLRRFRSLRRLLRALIRSFPDLFKFILLLFIVLLFFACIGYQLFGGSDNSCCDPTWDSENDIYGYENFDSFGESL 150 (200)
T ss_dssp HHHHHHHHTTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTS-------SS----SSTHHHHSSHHHHH
T ss_pred ccccccccccccccccccccccccccccccccccccccccccchhheecccccccccccccccccccccccccccccccc
Confidence 44444444433332221 112344567778888999999999999887654322111 111 1223456788999999
Q ss_pred HHHHHHhhccc--CCcCCC-----CchhHHHH-HHHHHHHHHHHHHHHHHH
Q psy1512 283 YWCTLALTTIG--DLPRPR-----SKGEYFFV-IVQLLFGLLLFATVLGHV 325 (679)
Q Consensus 283 ywa~~tlttvG--di~~p~-----t~~e~i~~-i~~~i~G~~~~a~~ig~i 325 (679)
||++.++|+.| |. .|. +..+.++. ++..+.+.++++.++|.|
T Consensus 151 ~~~~~~~t~~~~~~~-~~~~~~~~~~~~~~~~~~~~~i~~~~l~nlliavi 200 (200)
T PF00520_consen 151 YWLFQTMTGEGWGDV-MPSCMSARSWLAVIFFISFIIIVSILLLNLLIAVI 200 (200)
T ss_dssp HHHHHHHTTTTCCCC-HHHHHHTTSTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccccccCCcccc-ccccccccchhHhHHhhhhhhhHHHHHHHHHHhcC
Confidence 99999999998 55 344 78888888 667777779999998875
No 12
>KOG0500|consensus
Probab=99.18 E-value=2.3e-09 Score=112.22 Aligned_cols=70 Identities=50% Similarity=0.700 Sum_probs=56.8
Q ss_pred CceecCCCCceEEEEEeeEEEEEecCCceEeEEcCCCCeeeeeccccCC---ceEEEEeeeeeeeeeee--ehhhhccc
Q psy1512 604 TPLEKGEVGKEMYIVNRGRLQVVADNGKTVLATLRAGSYFGEISILNMG---TAGTNLIQECEDHISIR--FRFCKAKS 677 (679)
Q Consensus 604 ~ii~~Ge~g~~~yiI~~G~v~v~~~~~~~~i~~L~~G~~FGE~all~~~---~~t~~a~~~~~~~~~~~--~~~~~~~~ 677 (679)
+|+|+||.|++||||++|..+|+.++|..+..+|.+|++|||+++|+-+ +.+=+.+ +++|++ -++||+|.
T Consensus 340 yICrKGdvgkEMyIVk~G~L~Vv~dDg~t~~~~L~~G~~FGEisIlni~g~~~gNRRta----nvrSvGYSDlfvLskd 414 (536)
T KOG0500|consen 340 YICRKGDVGKEMYIVKEGKLAVVADDGVTVFVTLKAGSVFGEISILNIKGNKNGNRRTA----NVRSVGYSDLFVLSKD 414 (536)
T ss_pred eEEecCcccceEEEEEccEEEEEecCCcEEEEEecCCceeeeeEEEEEcCcccCCccee----eeeeeccceeeEeeHH
Confidence 9999999999999999999999999999999999999999999998744 1222222 333333 37899985
No 13
>KOG4390|consensus
Probab=98.86 E-value=1.3e-11 Score=124.28 Aligned_cols=186 Identities=15% Similarity=0.272 Sum_probs=125.0
Q ss_pred hhHHHHHHHHHHHHHHHHHhhheeEEEECCeEeeCHHHHHHHHhcCCCceehhhhccchHHHHHhhhh---HHHHHHHHH
Q psy1512 131 VIWFCLDYMADLMYVIDILIHFRTGYLEDGVLQTDSTKLRDHYMNSTTFYIDCLCLLPLDFLYLSIGF---NSILRLFRL 207 (679)
Q Consensus 131 ~~~~~~~~i~d~~f~~Di~l~f~t~y~~~g~~v~d~~~I~~~Ylks~~f~~Dlls~lP~~~~~~~~~~---~~~lrl~rl 207 (679)
..++.+|..|-++|..+.++++..+ --+.++++|-.-++|+++++|+++-...... ...+-.+|.
T Consensus 227 ~aFFclDTACVmIFT~EYlLRL~aA------------PsR~rF~RSvMSiIDVvAIlPYYigLv~t~N~DVSGaFVTLRV 294 (632)
T KOG4390|consen 227 VAFFCLDTACVMIFTGEYLLRLFAA------------PSRYRFLRSVMSIIDVVAILPYYIGLVMTDNEDVSGAFVTLRV 294 (632)
T ss_pred eeeEEecceeEEEeeHHHHHHHHcC------------chHHHHHHHHHHHHHHhhhhhhheEEEecCCccccceeEEEEe
Confidence 4467889999999999999999887 3366788887789999999998743321111 112222333
Q ss_pred HHHHHHHHHHHhhhhhccchh-----HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCcccCCCCCchhhhhhHHHH
Q psy1512 208 VKIYRFWAFMDRTERHTNYPN-----LFRSSSLIHYLLVIFHWNGCLYHIIYKNDGFGSRNWVYGDSDTTDVVKQYLQSY 282 (679)
Q Consensus 208 lrl~rl~~~~~~~~~~~~~~~-----~~~~~~l~~~~l~~~H~~aCl~~~i~~~~~~~~~~Wi~~~~~~~~~~~~Y~~sl 282 (679)
+|++|++++.+..+....... .-.+..+++.+.+.+.++|.+.|+..... +.+-++....|+
T Consensus 295 FRVFRIFKFSRHSQGLRILGYTLKSCASELGFLlFSLtMAIIIFATvMfYAEKg~-------------~at~FTsIPaaF 361 (632)
T KOG4390|consen 295 FRVFRIFKFSRHSQGLRILGYTLKSCASELGFLLFSLTMAIIIFATVMFYAEKGS-------------SATKFTSIPAAF 361 (632)
T ss_pred eeeeeeeeecccccccchhhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhccc-------------cccccccCcHhH
Confidence 333444443332221111111 12234455556666667777777654332 344567788899
Q ss_pred HHHHHHhhccc--CCcCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1512 283 YWCTLALTTIG--DLPRPRSKGEYFFVIVQLLFGLLLFATVLGHVANIVTSVSAARKEFQAK 342 (679)
Q Consensus 283 ywa~~tlttvG--di~~p~t~~e~i~~i~~~i~G~~~~a~~ig~i~~ii~~~~~~~~~~~~~ 342 (679)
|+.++||||.| |+ .|.|..+++|..++.+.|+++.|..+..|.+-+..++...+.-.++
T Consensus 362 WYTIVTmTTLGYGDM-Vp~TIaGKIfGsiCSLSGVLVIALPVPvIVSNFSRIYHQNQRADKR 422 (632)
T KOG4390|consen 362 WYTIVTMTTLGYGDM-VPSTIAGKIFGSICSLSGVLVIALPVPVIVSNFSRIYHQNQRADKR 422 (632)
T ss_pred hhheeeeeecccccc-chHHHHHHHhhhhhcccceEEEeccccEEEechhHHHhhhhhhhHH
Confidence 99999999997 99 5999999999999999999999998888887777766544433333
No 14
>KOG0498|consensus
Probab=98.85 E-value=2.2e-07 Score=104.97 Aligned_cols=64 Identities=27% Similarity=0.459 Sum_probs=54.1
Q ss_pred CCCceecCCCCceEEEEEeeEEEEEec--CCceEeEEcCCCCeee-eeccccC-C--ceEEEEeeeeeee
Q psy1512 602 KRTPLEKGEVGKEMYIVNRGRLQVVAD--NGKTVLATLRAGSYFG-EISILNM-G--TAGTNLIQECEDH 665 (679)
Q Consensus 602 ~~~ii~~Ge~g~~~yiI~~G~v~v~~~--~~~~~i~~L~~G~~FG-E~all~~-~--~~t~~a~~~~~~~ 665 (679)
+.+|++|||..++||||.+|.+++.+. ++......|++||+|| |+..+.. . ++||+|.+.||.-
T Consensus 450 ge~iireGd~v~~myFI~rG~le~~~~~~g~~~~~~~L~~Gd~~GeEl~~~~~~~p~t~TVralt~~el~ 519 (727)
T KOG0498|consen 450 GEYIIREGDPVTDMYFIVRGSLESITTDGGGFFVVAILGPGDFFGEELLTWCLDLPQTRTVRALTYCELF 519 (727)
T ss_pred CCeEEecCCccceeEEEEeeeEEEEEccCCceEEEEEecCCCccchHHHHHHhcCCCCceeehhhhhhHH
Confidence 338999999999999999999999873 3556789999999999 7777665 2 9999999877743
No 15
>PLN03192 Voltage-dependent potassium channel; Provisional
Probab=98.80 E-value=7.1e-07 Score=106.30 Aligned_cols=65 Identities=20% Similarity=0.326 Sum_probs=55.7
Q ss_pred CCCceecCCCCceEEEEEeeEEEEEec--CCceEeEEcCCCCeeeeeccccCC--ceEEEEeeeeeeee
Q psy1512 602 KRTPLEKGEVGKEMYIVNRGRLQVVAD--NGKTVLATLRAGSYFGEISILNMG--TAGTNLIQECEDHI 666 (679)
Q Consensus 602 ~~~ii~~Ge~g~~~yiI~~G~v~v~~~--~~~~~i~~L~~G~~FGE~all~~~--~~t~~a~~~~~~~~ 666 (679)
+..|+.|||.++++|||.+|+|++... +.+.++..|++||+|||.+++.+. ++|++|.+.|+-..
T Consensus 405 ge~I~~qge~~~~lY~I~~G~V~i~~~~~~~e~~l~~l~~Gd~FGE~~~l~~~p~~~t~ra~~~s~ll~ 473 (823)
T PLN03192 405 REDVIMQNEAPDDVYIVVSGEVEIIDSEGEKERVVGTLGCGDIFGEVGALCCRPQSFTFRTKTLSQLLR 473 (823)
T ss_pred CCEEEECCCCCceEEEEEecEEEEEEecCCcceeeEEccCCCEecchHHhcCCCCCCeEEEcccEEEEE
Confidence 348899999999999999999999863 345678999999999999999887 88999998776554
No 16
>PF07885 Ion_trans_2: Ion channel; InterPro: IPR013099 This entry includes the two membrane helix type ion channels found in bacteria []. ; PDB: 1KKD_A 2A0L_A 1ORQ_C 3UKM_C 1LNQ_E 3OUS_A 3LDC_A 3LDD_A 3RBZ_A 3LDE_A ....
Probab=98.79 E-value=5.5e-08 Score=80.14 Aligned_cols=75 Identities=27% Similarity=0.571 Sum_probs=61.1
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCCCcccCCCCCchhhhhhHHHHHHHHHHhhccc--CCcCCCCchhHHHHHHHHHHHHH
Q psy1512 239 LLVIFHWNGCLYHIIYKNDGFGSRNWVYGDSDTTDVVKQYLQSYYWCTLALTTIG--DLPRPRSKGEYFFVIVQLLFGLL 316 (679)
Q Consensus 239 ~l~~~H~~aCl~~~i~~~~~~~~~~Wi~~~~~~~~~~~~Y~~slywa~~tlttvG--di~~p~t~~e~i~~i~~~i~G~~ 316 (679)
++++.+..+|+++.+... . ....|.+|+||+++|+||+| |+ .|.+..+++++++.+++|+.
T Consensus 2 ~~~~~l~~~~~~~~~~~~----~------------~~~~~~da~yfs~~t~tTvGyGDi-~p~t~~gr~~~~~~~~~G~~ 64 (79)
T PF07885_consen 2 ILLLVLAFGAIFFYISEG----S------------EKWSFIDALYFSFVTITTVGYGDI-VPQTPAGRIFTIIYMLIGIF 64 (79)
T ss_dssp HHHHHHHHHHHHHHHTTS----S------------STTSHHHHHHHHHHHHTT---SSS-STSSHHHHHHHHHHHHHHHH
T ss_pred EEEeeeHHHHHHHHHHHh----c------------ccCCHHHHHHHHHHHHhcccCCCc-cCCccchHHHHHHHHHHHHH
Confidence 456677888888887111 1 12469999999999999998 99 69999999999999999999
Q ss_pred HHHHHHHHHHHHHH
Q psy1512 317 LFATVLGHVANIVT 330 (679)
Q Consensus 317 ~~a~~ig~i~~ii~ 330 (679)
++++.++.+++.+.
T Consensus 65 ~~~~~~~~~~~~l~ 78 (79)
T PF07885_consen 65 LFALFLSVLASVLT 78 (79)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhc
Confidence 99999999998875
No 17
>KOG1113|consensus
Probab=98.72 E-value=1.3e-08 Score=102.91 Aligned_cols=77 Identities=18% Similarity=0.326 Sum_probs=64.2
Q ss_pred hhHhhhhHHHHHHHhhhcCCCceecCCCCceEEEEEeeEEEEEecCCceEeEEcCCCCeeeeeccccCC--ceEEEEeee
Q psy1512 584 PAARVRLESIAVKRLQKYKRTPLEKGEVGKEMYIVNRGRLQVVADNGKTVLATLRAGSYFGEISILNMG--TAGTNLIQE 661 (679)
Q Consensus 584 P~~~~~l~~~~~~rl~~~~~~ii~~Ge~g~~~yiI~~G~v~v~~~~~~~~i~~L~~G~~FGE~all~~~--~~t~~a~~~ 661 (679)
|+....+.+.+..+..+.+..|+.||+.|+.||+|.+|+++|+.+ ..-+.++++|.+|||+||+++. .|||.|.++
T Consensus 135 ~eq~~~v~dam~~~~v~~G~~Vi~qGdeGd~fYvI~kGt~dVyv~--~~~v~~~~~g~sFGElALmyn~PRaATv~a~t~ 212 (368)
T KOG1113|consen 135 DEQLSQVLDAMFEKRVKAGETVIKQGDEGDNFYVIDKGTFDVYVN--GTYVTTYSPGGSFGELALMYNPPRAATVVAKSL 212 (368)
T ss_pred HHHHHHHHHhhceeeecCCcEEEecCCcCCcEEEEecceEEEEEC--CeEEeeeCCCCchhhhHhhhCCCcccceeeccc
Confidence 444555555555566677779999999999999999999999987 4568899999999999999999 888888875
Q ss_pred e
Q psy1512 662 C 662 (679)
Q Consensus 662 ~ 662 (679)
+
T Consensus 213 ~ 213 (368)
T KOG1113|consen 213 K 213 (368)
T ss_pred c
Confidence 4
No 18
>KOG0614|consensus
Probab=98.69 E-value=3.5e-09 Score=111.46 Aligned_cols=174 Identities=16% Similarity=0.248 Sum_probs=117.0
Q ss_pred HhhhhhhccccccccCChhHHHHHHHhccceEeCCCCEEEEeCCeeeeEEEEeeeeEEEEEehhhHHHHHhhChhHHHHH
Q psy1512 447 NVHLDTLKRVEIFQNTEAGFLCELVLRLRPVLFSPGDYICRKGNRRTASVRSVGYSDLFVLSKTDMWDVLKEYPAARVRL 526 (679)
Q Consensus 447 ~~~~~~l~~i~lF~~~~~~~l~~L~~~l~~~~~~pge~I~~~Gd~r~asv~a~~~~~ly~I~~g~~~~vl~~~p~~~~~~ 526 (679)
+-+..+|+++|+|++++++.+..++..++...|..|++|++||+. ++.+|+|++|.+..--..-|. ++-
T Consensus 268 ~~~~~fLrsv~~~q~l~Ee~L~KiaD~le~~~Yd~g~yIirqge~---------G~~ffii~~G~V~vtq~~e~~--~q~ 336 (732)
T KOG0614|consen 268 EQYMNFLRSVPLFQNLPEELLLKIADVLEEEYYDAGEYIIRQGEK---------GDTFFIISKGTVKVTQQDEGS--TQP 336 (732)
T ss_pred HHHHHHHHhhhhhccCCHHHHHHHHHHHHHHhhcCCceEEeecCC---------CCeEEEEecceEEEeecCCCC--Cch
Confidence 346789999999999999999999999999999999999999998 889999999976432222111 010
Q ss_pred HHHHHHHHhhhccCcccCCCCCCCCCCCCcccccccccc-cceeecccchhHHHhhcChhHhhhhHHHHHHHhhhcCCCc
Q psy1512 527 ESIAVKRLQKYKRTPLEKGISPSPFPGNRRTASVRSVGY-SDLFVLSKTDMWDVLKEYPAARVRLESIAVKRLQKYKRTP 605 (679)
Q Consensus 527 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~r~atv~A~~~-~~l~~L~r~~f~~il~~~P~~~~~l~~~~~~rl~~~~~~i 605 (679)
+. .+. ...|..+++.++.....|+|++.|... +++++|+|+.|.+++...-+..++-...-.++-....
T Consensus 337 ~~------lr~-l~kGd~FGE~al~~edvRtAniia~~~gv~cl~lDresF~~liG~l~~l~ek~~~D~~r~A~~~~--- 406 (732)
T KOG0614|consen 337 QE------LRT-LNKGDYFGERALLGEDVRTANIIAQAPGVECLTLDRESFKKLIGDLEELKEKDYGDEERRASVVI--- 406 (732)
T ss_pred hH------Hhh-ccccchhhHHHhhccCccchhhhccCCCceEEEecHHHHHHhcccHHHhhhhhccchhhhhhhHH---
Confidence 11 111 112334444577788899999999886 9999999999999998877766533322222211000
Q ss_pred eecCCCCceEEEEEeeEEEEEecCCceEeEEcCCCCeeeeeccccCC
Q psy1512 606 LEKGEVGKEMYIVNRGRLQVVADNGKTVLATLRAGSYFGEISILNMG 652 (679)
Q Consensus 606 i~~Ge~g~~~yiI~~G~v~v~~~~~~~~i~~L~~G~~FGE~all~~~ 652 (679)
+-+..+. .-.|.+. .-+.+++||-|. ||...|+.-+
T Consensus 407 --~~~~~~e-----~a~v~l~---dl~~iaTLGvGg-FGRVELV~~~ 442 (732)
T KOG0614|consen 407 --KEDFAEE-----FAQVKLS---DLKRIATLGVGG-FGRVELVKVN 442 (732)
T ss_pred --HHHHHhh-----hcccchh---hhhhhhhcccCc-cceEEEEEec
Confidence 0000000 0111221 235688999999 9999987554
No 19
>PRK09392 ftrB transcriptional activator FtrB; Provisional
Probab=98.67 E-value=7.2e-09 Score=104.70 Aligned_cols=127 Identities=15% Similarity=0.104 Sum_probs=97.4
Q ss_pred hhhhccccccccCChhHHHHHHHhccceEeCCCCEEEEeCCeeeeEEEEeeeeEEEEEehhhHHHHHhhChhHHHHHHHH
Q psy1512 450 LDTLKRVEIFQNTEAGFLCELVLRLRPVLFSPGDYICRKGNRRTASVRSVGYSDLFVLSKTDMWDVLKEYPAARVRLESI 529 (679)
Q Consensus 450 ~~~l~~i~lF~~~~~~~l~~L~~~l~~~~~~pge~I~~~Gd~r~asv~a~~~~~ly~I~~g~~~~vl~~~p~~~~~~~~~ 529 (679)
.+.++.+++|+.++++.+..+....+.+.|.+|++|+++||+ .+.+|+|.+|.+...... + +.
T Consensus 6 ~~~l~~~~~f~~L~~~~~~~l~~~~~~~~~~~ge~l~~~g~~---------~~~~~~v~~G~v~~~~~~-~---~~---- 68 (236)
T PRK09392 6 LIRLRNLPLFADMADATFERLMRGAFLQRFPPGTMLITEGEP---------ADFLFVVLDGLVELSASS-Q---DR---- 68 (236)
T ss_pred HHHHhcCccccCCCHHHHHHHHhhcceeecCCCCEEEeCCCc---------cceEEEEEeCEEEEEEcC-C---Cc----
Confidence 357889999999999999999999999999999999999998 789999977755322110 0 00
Q ss_pred HHHHHhhhccCcccCCCCCCCCCCCCcccccccccccceeecccchhHHHhhcChhHhhhhHHHHHH
Q psy1512 530 AVKRLQKYKRTPLEKGISPSPFPGNRRTASVRSVGYSDLFVLSKTDMWDVLKEYPAARVRLESIAVK 596 (679)
Q Consensus 530 ~~~~~~~~~~~~~~~g~~~~~~~~~~r~atv~A~~~~~l~~L~r~~f~~il~~~P~~~~~l~~~~~~ 596 (679)
...-.....++..+..+++.+.|+.++++|.++|+++.+++++|.+++.++|.+...+...+.+
T Consensus 69 ---~~~i~~~~~g~~~g~~~~~~~~~~~~~~~A~~~~~~~~i~~~~~~~l~~~~p~l~~~~~~~l~~ 132 (236)
T PRK09392 69 ---ETTLAILRPVSTFILAAVVLDAPYLMSARTLTRSRVLMIPAELVREAMSEDPGFMRAVVFELAG 132 (236)
T ss_pred ---eEEEEEeCCCchhhhHHHhCCCCCceEEEEcCceEEEEEeHHHHHHHHHHCHHHHHHHHHHHHH
Confidence 0000111122222233567788999999999999999999999999999999999887776554
No 20
>KOG0499|consensus
Probab=98.63 E-value=2.9e-08 Score=105.65 Aligned_cols=84 Identities=39% Similarity=0.542 Sum_probs=66.1
Q ss_pred hhhHHHHHHHhhhcCC----CceecCCCCceEEEEEeeEEEEEe-cCCceEeEEcCCCCeeeeeccccCC-----ceEEE
Q psy1512 588 VRLESIAVKRLQKYKR----TPLEKGEVGKEMYIVNRGRLQVVA-DNGKTVLATLRAGSYFGEISILNMG-----TAGTN 657 (679)
Q Consensus 588 ~~l~~~~~~rl~~~~~----~ii~~Ge~g~~~yiI~~G~v~v~~-~~~~~~i~~L~~G~~FGE~all~~~-----~~t~~ 657 (679)
+.+...++.||+..-+ .++++||.|++||||+.|.|.|.. .++.+++++|.+|++|||++||.-+ +|+|+
T Consensus 540 r~mirDmllrLRsV~yLPgDfVCkKGeiGkEMYIIk~GqvQVlGGp~~~~Vl~tL~~GsVFGEISLLaigG~nRRTAnV~ 619 (815)
T KOG0499|consen 540 RQMIRDMLLRLRSVLYLPGDFVCKKGEIGKEMYIIKHGQVQVLGGPDGTKVLVTLKAGSVFGEISLLAIGGGNRRTANVV 619 (815)
T ss_pred HHHHHHHHHHhhceeecCCceeeecccccceeEEeecceEEEecCCCCCEEEEEecccceeeeeeeeeecCCCccchhhh
Confidence 3555666667777665 889999999999999999999997 5678899999999999999998744 67777
Q ss_pred EeeeeeeeeeeeehhhhcccC
Q psy1512 658 LIQECEDHISIRFRFCKAKST 678 (679)
Q Consensus 658 a~~~~~~~~~~~~~~~~~~~~ 678 (679)
|...| -++-|+|++
T Consensus 620 a~Gf~-------nLfvL~Kkd 633 (815)
T KOG0499|consen 620 AHGFA-------NLFVLDKKD 633 (815)
T ss_pred hcccc-------eeeEecHhH
Confidence 76333 345566653
No 21
>KOG2968|consensus
Probab=98.60 E-value=1.4e-08 Score=112.62 Aligned_cols=174 Identities=17% Similarity=0.260 Sum_probs=121.6
Q ss_pred CEEEEeCCeeeeEEEEeeeeEEEEEehhhHHHHHhhChhHHHHHHHHHHHHHhhhccCcccCCCCCCCCCCCCccccccc
Q psy1512 483 DYICRKGNRRTASVRSVGYSDLFVLSKTDMWDVLKEYPAARVRLESIAVKRLQKYKRTPLEKGISPSPFPGNRRTASVRS 562 (679)
Q Consensus 483 e~I~~~Gd~r~asv~a~~~~~ly~I~~g~~~~vl~~~p~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~r~atv~A 562 (679)
..|.++|+. +..+|++..|....+ ...-+..+ .. ......-.....|+.-+..+.++|.|...+++|
T Consensus 395 tiiv~q~a~---------~~gl~~ii~g~l~v~-~sm~~~s~-~~--~~~~~~~f~v~pG~ivgyla~lt~e~S~~tirA 461 (1158)
T KOG2968|consen 395 TIIVEQGAR---------DVGLYYIIKGSLSVY-QSMYDVSG-NL--VLAGMLLFVVGPGEIVGYLAILTNEPSFITIRA 461 (1158)
T ss_pred EEEEecccc---------cceeeEEeecceeee-ehhccccc-cc--ccccceEEEecCCceechhhhhcCCcceEEEEE
Confidence 346788887 678888877754111 10000111 00 000000111234444444677899999999999
Q ss_pred ccccceeecccchhHHHhhcChhHhhhhHHHHHHHhhhcCC---------------CceecCCCCceEEEEEeeEEEEEe
Q psy1512 563 VGYSDLFVLSKTDMWDVLKEYPAARVRLESIAVKRLQKYKR---------------TPLEKGEVGKEMYIVNRGRLQVVA 627 (679)
Q Consensus 563 ~~~~~l~~L~r~~f~~il~~~P~~~~~l~~~~~~rl~~~~~---------------~ii~~Ge~g~~~yiI~~G~v~v~~ 627 (679)
.++|.+..++|.+|.+++.++|...-.+...+.+++-+.-. .+.+|||..|..|++.+|+++-..
T Consensus 462 rsdt~v~~isrs~l~~~~~~~p~I~L~ia~svl~~lsp~lr~~D~AldWv~l~~g~alyrqgD~Sd~iyvVl~GRlRsv~ 541 (1158)
T KOG2968|consen 462 RSDTRVLFISRSDLERFLDAEPLIYLRIAHSVLRRLSPFLRKLDFALDWVRLEPGQALYRQGDSSDSIYVVLNGRLRSVI 541 (1158)
T ss_pred ecceEEEEeeHHHHHHHHHhCceEEEehhhHHHHhcCHHHhhhhhhcceEEeccccHHHhcCCccCcEEEEecCeehhhh
Confidence 99999999999999999999996666555555553333221 557999999999999999999553
Q ss_pred --cCCce-EeEEcCCCCeeeeeccccCC--ceEEEEeeeeeeeeeee
Q psy1512 628 --DNGKT-VLATLRAGSYFGEISILNMG--TAGTNLIQECEDHISIR 669 (679)
Q Consensus 628 --~~~~~-~i~~L~~G~~FGE~all~~~--~~t~~a~~~~~~~~~~~ 669 (679)
+++++ .+.++|+||.+||.+.|... ..|+-|+.++|-++.+.
T Consensus 542 ~~~~~k~~i~~EygrGd~iG~~E~lt~~~R~tTv~AvRdSelariPe 588 (1158)
T KOG2968|consen 542 RQSGGKKEIVGEYGRGDLIGEVEMLTKQPRATTVMAVRDSELARIPE 588 (1158)
T ss_pred hccCccchhhhhccCcceeehhHHhhcCCccceEEEEeehhhhhccH
Confidence 23333 68899999999999999998 88999999998776543
No 22
>PF08412 Ion_trans_N: Ion transport protein N-terminal; InterPro: IPR013621 This domain is found to the N terminus of IPR005821 from INTERPRO in voltage- and cyclic nucleotide-gated K/Na ion channels.
Probab=98.55 E-value=1.1e-07 Score=76.33 Aligned_cols=56 Identities=27% Similarity=0.628 Sum_probs=46.0
Q ss_pred CccchhhhhhhhccCCCCCCCCceEEcCCChhHHHHHHHHHHHHHHHHHHHHHhhhcccc
Q psy1512 66 TGADCAVHRVAERYPRSSGPNLTFVFDPAGRFSYYWSMIVSLAFLYNFWVIIYRFAFQEI 125 (679)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~~vi~P~s~~~~~W~~i~~~~~~~~~~~ip~~~~F~~~ 125 (679)
.++.+++++..+|..+ ...|||||+|++|.+||++++++++++++++|+.++|...
T Consensus 18 f~S~~ai~~E~~R~~~----~~~~IIHP~S~fR~~WD~~m~~~~~~~~~~iP~~isF~~d 73 (77)
T PF08412_consen 18 FGSKKAIEKEKERQRS----SGPWIIHPFSKFRFYWDLIMLILLLYNLIIIPFRISFFSD 73 (77)
T ss_pred HccHHHHHHHHHHHhc----CCCeEEcCCccHHHHHHHHHHHHHHHHHHHHhhhheEecC
Confidence 4666666666666532 2368999999999999999999999999999999999643
No 23
>KOG1420|consensus
Probab=98.53 E-value=4.6e-08 Score=103.39 Aligned_cols=179 Identities=15% Similarity=0.303 Sum_probs=113.4
Q ss_pred HHHHHHHHHHHHHHHHhhheeEEEECCeEeeCHHHHHHHHhcCCCceehhhhccchHHHHHhhhh---H-H--HHHHHHH
Q psy1512 134 FCLDYMADLMYVIDILIHFRTGYLEDGVLQTDSTKLRDHYMNSTTFYIDCLCLLPLDFLYLSIGF---N-S--ILRLFRL 207 (679)
Q Consensus 134 ~~~~~i~d~~f~~Di~l~f~t~y~~~g~~v~d~~~I~~~Ylks~~f~~Dlls~lP~~~~~~~~~~---~-~--~lrl~rl 207 (679)
..+|....++|++-++++|..+-- +.|||+.+-+.+-+..+...+.. + + -+|++|-
T Consensus 165 qqidlafnifflvyffirfiaasd------------------klwf~lemys~vdfftippsfvsiyl~r~wlglrflra 226 (1103)
T KOG1420|consen 165 QQIDLAFNIFFLVYFFIRFIAASD------------------KLWFWLEMYSVVDFFTIPPSFVSIYLNRSWLGLRFLRA 226 (1103)
T ss_pred HHhhhHhhHHHHHHHHHHHhhccc------------------ceeeeeehhhheeeeecCchheEEEeccchHHHHHHHH
Confidence 358899999999999999976511 24888777666655444322211 0 1 1345554
Q ss_pred HHHHHHHHHHHhhhhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCcc-cCCCCCchhhhhhHHHHHHHH
Q psy1512 208 VKIYRFWAFMDRTERHTNYPNLFRSSSLIHYLLVIFHWNGCLYHIIYKNDGFGSRNWV-YGDSDTTDVVKQYLQSYYWCT 286 (679)
Q Consensus 208 lrl~rl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~H~~aCl~~~i~~~~~~~~~~Wi-~~~~~~~~~~~~Y~~slywa~ 286 (679)
+|+..+..+++.+. ..+.++-+++.+++.+++.++-..|-+..++... .+.|- +.+ +.--.|..|.|+.+
T Consensus 227 lrlmtvpdilqyln-ilktsssirl~qlvsifisvwltaag~ihllens----gdp~~~f~n----~hrltyw~cvyfl~ 297 (1103)
T KOG1420|consen 227 LRLMTVPDILQYLN-ILKTSSSIRLVQLVSIFISVWLTAAGFIHLLENS----GDPWENFQN----NHRLTYWECVYFLM 297 (1103)
T ss_pred HHhccHHHHHHHHH-HHhccchhhHHHHHHHHHHHHHhhcceeehhhcC----CChhHhccC----cccchhhheeeeeE
Confidence 44444443333321 1223344566666555444433334444433322 12342 111 22357999999999
Q ss_pred HHhhccc--CCcCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1512 287 LALTTIG--DLPRPRSKGEYFFVIVQLLFGLLLFATVLGHVANIVTSVSAARKEFQ 340 (679)
Q Consensus 287 ~tlttvG--di~~p~t~~e~i~~i~~~i~G~~~~a~~ig~i~~ii~~~~~~~~~~~ 340 (679)
+||+||| |+ +..|..++.|.++.++.|..+||--+..|..++.+.++---+|+
T Consensus 298 vtmstvgygdv-yc~t~lgrlfmvffil~glamfasyvpeiielignr~kyggeyk 352 (1103)
T KOG1420|consen 298 VTMSTVGYGDV-YCKTTLGRLFMVFFILGGLAMFASYVPEIIELIGNRKKYGGEYK 352 (1103)
T ss_pred EEeeeccccce-eehhhhhHHHHHHHHHHHHHHHHhhhHHHHHHHccccccCceee
Confidence 9999997 88 78999999999999999999999999999999988665444443
No 24
>PLN02868 acyl-CoA thioesterase family protein
Probab=98.40 E-value=1.2e-06 Score=95.81 Aligned_cols=42 Identities=21% Similarity=0.431 Sum_probs=39.2
Q ss_pred hhhhccccccccCChhHHHHHHHhccceEeCCCCEEEEeCCe
Q psy1512 450 LDTLKRVEIFQNTEAGFLCELVLRLRPVLFSPGDYICRKGNR 491 (679)
Q Consensus 450 ~~~l~~i~lF~~~~~~~l~~L~~~l~~~~~~pge~I~~~Gd~ 491 (679)
.+.++++++|++++++.+..++..++.+.|.+||+|+++||+
T Consensus 7 ~~~L~~~~~F~~L~~~~l~~l~~~~~~~~~~~Ge~I~~~Gd~ 48 (413)
T PLN02868 7 VEFLGSVPLLQRLPSSSLKKIAEVVVPKRYGKGEYVVREGEP 48 (413)
T ss_pred HHHHhcCcccccCCHHHHHHHHHhceEEEECCCCEEEeCCCc
Confidence 356789999999999999999999999999999999999987
No 25
>cd00038 CAP_ED effector domain of the CAP family of transcription factors; members include CAP (or cAMP receptor protein (CRP)), which binds cAMP, FNR (fumarate and nitrate reduction), which uses an iron-sulfur cluster to sense oxygen) and CooA, a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. Cyclic nucleotide-binding domain similar to CAP are also present in cAMP- and cGMP-dependent protein kinases (cAPK and cGPK) and vertebrate cyclic nucleotide-gated ion-channels. Cyclic nucleotide-monophosphate binding domain; proteins that bind cyclic nucleotides (cAMP or cGMP) share a structural domain of about 120 residues; the best studied is the prokaryotic catabolite gene activator, CAP, where such a domain is known to be composed of three alpha-helices and a distinctive eight-stranded, antiparallel beta-barrel structure; three conserved glycine residues are thought to be essential for maintenance of
Probab=98.38 E-value=1.3e-07 Score=82.80 Aligned_cols=114 Identities=25% Similarity=0.312 Sum_probs=83.6
Q ss_pred ccccCChhHHHHHHHhccceEeCCCCEEEEeCCeeeeEEEEeeeeEEEEEehhhHHHHHhhChhHHHHHHHHHHHHHhhh
Q psy1512 458 IFQNTEAGFLCELVLRLRPVLFSPGDYICRKGNRRTASVRSVGYSDLFVLSKTDMWDVLKEYPAARVRLESIAVKRLQKY 537 (679)
Q Consensus 458 lF~~~~~~~l~~L~~~l~~~~~~pge~I~~~Gd~r~asv~a~~~~~ly~I~~g~~~~vl~~~p~~~~~~~~~~~~~~~~~ 537 (679)
+|+.++++.+..++..++.+.+.+|++|+.+|++ ...+|+|.+|.+...... + .|. +... .
T Consensus 1 ~f~~l~~~~~~~l~~~~~~~~~~~g~~l~~~~~~---------~~~~~~i~~G~v~~~~~~-~--~g~------~~~~-~ 61 (115)
T cd00038 1 LFSGLDDEELEELADALEERRFPAGEVIIRQGDP---------ADSLYIVLSGSVEVYKLD-E--DGR------EQIV-G 61 (115)
T ss_pred CcccCCHHHHHHHHhhceeeeeCCCCEEEcCCCC---------CCeEEEEEeCEEEEEEEC-C--CCc------EEEE-E
Confidence 4788999999999999999999999999999998 678999977755322211 0 000 0000 0
Q ss_pred ccCcccCCCCCCCCCCCCcccccccccccceeecccchhHHHhhcChhHhhhh
Q psy1512 538 KRTPLEKGISPSPFPGNRRTASVRSVGYSDLFVLSKTDMWDVLKEYPAARVRL 590 (679)
Q Consensus 538 ~~~~~~~g~~~~~~~~~~r~atv~A~~~~~l~~L~r~~f~~il~~~P~~~~~l 590 (679)
....++..+...++.+.++..+++|.+.|.++.|++++|.++++++|+....+
T Consensus 62 ~~~~g~~~g~~~~~~~~~~~~~~~a~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 114 (115)
T cd00038 62 FLGPGDLFGELALLGNGPRSATVRALTDSELLVLPRSDFRRLLQEYPELARRL 114 (115)
T ss_pred ecCCccCcChHHHhcCCCCCceEEEcCceEEEEEeHHHHHHHHHHCcHhHHhc
Confidence 11122222222344678899999999999999999999999999999887654
No 26
>PRK11753 DNA-binding transcriptional dual regulator Crp; Provisional
Probab=98.23 E-value=5.3e-07 Score=89.31 Aligned_cols=121 Identities=13% Similarity=0.114 Sum_probs=85.7
Q ss_pred ccCChhHHHHHHHhccceEeCCCCEEEEeCCeeeeEEEEeeeeEEEEEehhhHHHHHhhChhHHHHHHHHHHHHHhhhcc
Q psy1512 460 QNTEAGFLCELVLRLRPVLFSPGDYICRKGNRRTASVRSVGYSDLFVLSKTDMWDVLKEYPAARVRLESIAVKRLQKYKR 539 (679)
Q Consensus 460 ~~~~~~~l~~L~~~l~~~~~~pge~I~~~Gd~r~asv~a~~~~~ly~I~~g~~~~vl~~~p~~~~~~~~~~~~~~~~~~~ 539 (679)
+.++++.+..++..++.+.|.+|++|+.+||+ .+.+|+|.+|.+..+... + .|. + ..-...
T Consensus 6 ~~~~~~~~~~l~~~~~~~~~~kg~~l~~~g~~---------~~~~y~V~~G~v~~~~~~-~--~g~------~-~~~~~~ 66 (211)
T PRK11753 6 KPQTDPTLEWFLSHCHIHKYPAKSTLIHAGEK---------AETLYYIVKGSVAVLIKD-E--EGK------E-MILSYL 66 (211)
T ss_pred CCCCHHHHHHHHhhCeEEEeCCCCEEEeCCCC---------CCeEEEEEeCEEEEEEEC-C--CCC------E-EEEEEc
Confidence 45789999999999999999999999999998 678999977754321100 0 000 0 000011
Q ss_pred CcccCCCCCCCCCC-CCcccccccccccceeecccchhHHHhhcChhHhhhhHHHHHHHhh
Q psy1512 540 TPLEKGISPSPFPG-NRRTASVRSVGYSDLFVLSKTDMWDVLKEYPAARVRLESIAVKRLQ 599 (679)
Q Consensus 540 ~~~~~g~~~~~~~~-~~r~atv~A~~~~~l~~L~r~~f~~il~~~P~~~~~l~~~~~~rl~ 599 (679)
..++..+...++.+ .++.++++|.++|+++.+++++|.++++++|+....+...+.+++.
T Consensus 67 ~~g~~~g~~~~~~~~~~~~~~~~a~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~~~~~l~ 127 (211)
T PRK11753 67 NQGDFIGELGLFEEGQERSAWVRAKTACEVAEISYKKFRQLIQVNPDILMALSAQMARRLQ 127 (211)
T ss_pred CCCCEEeehhhccCCCCceEEEEEcCcEEEEEEcHHHHHHHHHHCHHHHHHHHHHHHHHHH
Confidence 22332222334444 4788999999999999999999999999999998877666655443
No 27
>COG0664 Crp cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases [Signal transduction mechanisms]
Probab=98.15 E-value=7.6e-07 Score=87.82 Aligned_cols=131 Identities=16% Similarity=0.176 Sum_probs=93.1
Q ss_pred ccccccccCChhHHHHHHHhccceEeCCCCEEEEeCCeeeeEEEEeeeeEEEEEehhhHHHHHhhChhHHHHHHHHHHHH
Q psy1512 454 KRVEIFQNTEAGFLCELVLRLRPVLFSPGDYICRKGNRRTASVRSVGYSDLFVLSKTDMWDVLKEYPAARVRLESIAVKR 533 (679)
Q Consensus 454 ~~i~lF~~~~~~~l~~L~~~l~~~~~~pge~I~~~Gd~r~asv~a~~~~~ly~I~~g~~~~vl~~~p~~~~~~~~~~~~~ 533 (679)
...+.|...+......+....+...+++|++|+++||+ .+.+|+|.+|.+...... ++ |.-
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~g~~---------~~~~y~v~~G~v~~~~~~-~~--G~~------- 63 (214)
T COG0664 3 KENPLLNLLPSELLELLALKLEVRKLPKGEVLFTEGEE---------ADSLYIILSGIVKLYANT-ED--GRE------- 63 (214)
T ss_pred ccccccccCCHHHHHHHhhhceeEeeCCCCEEEcCCCc---------CceEEEEEEeEEEEEEEC-CC--CcE-------
Confidence 45566776777888888888999999999999999999 677999977754221110 00 000
Q ss_pred HhhhccCcccCCCCCCCCCCCCcccccccccccceeecccchhHHHhhcChhHhhhhHHHHHHHhhhcCC
Q psy1512 534 LQKYKRTPLEKGISPSPFPGNRRTASVRSVGYSDLFVLSKTDMWDVLKEYPAARVRLESIAVKRLQKYKR 603 (679)
Q Consensus 534 ~~~~~~~~~~~g~~~~~~~~~~r~atv~A~~~~~l~~L~r~~f~~il~~~P~~~~~l~~~~~~rl~~~~~ 603 (679)
..-.....+++.++.+++.+.|++++++|.++|+++.+++++|.+++.+.|.....+...+.++++....
T Consensus 64 ~~~~~~~~g~~fg~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~p~l~~~l~~~~~~~l~~~~~ 133 (214)
T COG0664 64 IILGFLGPGDFFGELALLGGDPRSASAVALTDVEVLEIPRKDFLELLAESPKLALALLRLLARRLRQALE 133 (214)
T ss_pred EEEEEecCCchhhhHHHhcCCCccceEEEcceEEEEEecHHHHHHHHhhCcHHHHHHHHHHHHHHHHHHH
Confidence 0000122334444445566679999999999999999999999999877999998888887775554443
No 28
>COG2905 Predicted signal-transduction protein containing cAMP-binding and CBS domains [Signal transduction mechanisms]
Probab=98.05 E-value=3.2e-06 Score=90.92 Aligned_cols=125 Identities=18% Similarity=0.092 Sum_probs=96.5
Q ss_pred hhhhccccccccCChhHHHHHHHhccceEeCCCCEEEEeCCeeeeEEEEeeeeEEEEEehhhHHHHHhhChhHHHHHHHH
Q psy1512 450 LDTLKRVEIFQNTEAGFLCELVLRLRPVLFSPGDYICRKGNRRTASVRSVGYSDLFVLSKTDMWDVLKEYPAARVRLESI 529 (679)
Q Consensus 450 ~~~l~~i~lF~~~~~~~l~~L~~~l~~~~~~pge~I~~~Gd~r~asv~a~~~~~ly~I~~g~~~~vl~~~p~~~~~~~~~ 529 (679)
.+++++.|.|..++++.+.+|..++....|.+||.|+..|.| ...+|+|.+|-++..-
T Consensus 6 ~~Fl~~~pPF~~L~~eel~~L~~~l~v~yy~kge~ii~~~~p---------~~~l~vi~kG~vev~~------------- 63 (610)
T COG2905 6 DQFLQQHPPFSQLPAEELEQLMGALEVKYYRKGEIIIYAGSP---------VHYLYVIRKGVVEVRS------------- 63 (610)
T ss_pred HHHHhcCCCcccCCHHHHHHHHhhhccccccCCCeeecCCCC---------cceeEEEEeceeeEEc-------------
Confidence 568899999999999999999999999999999999999998 6799999777443211
Q ss_pred HHHHHhhh--ccCcccCCCCCCCCCCCCcccccccccccceeecccchhHHHhhcChhHhhhhHHHHHHHhh
Q psy1512 530 AVKRLQKY--KRTPLEKGISPSPFPGNRRTASVRSVGYSDLFVLSKTDMWDVLKEYPAARVRLESIAVKRLQ 599 (679)
Q Consensus 530 ~~~~~~~~--~~~~~~~g~~~~~~~~~~r~atv~A~~~~~l~~L~r~~f~~il~~~P~~~~~l~~~~~~rl~ 599 (679)
.+ ++. ....|..++..+++++.+....+.|.+++-+|.|+++.|.++..++|+++.-+...+.+|++
T Consensus 64 -~~--g~v~~~~~~gdlFg~~~l~~~~~~~~~~~aeedsl~y~lp~s~F~ql~~~n~~f~~ff~~~~akR~~ 132 (610)
T COG2905 64 -DG--GEVLDRLAAGDLFGFSSLFTELNKQRYMAAEEDSLCYLLPKSVFMQLMEENPEFADFFLRSLAKRLR 132 (610)
T ss_pred -CC--CeeeeeeccCccccchhhcccCCCcceeEeeccceEEecCHHHHHHHHHhCcHHHHHHHHHHHHHHH
Confidence 10 110 01122333334566777777788889999999999999999999999998877766555443
No 29
>PRK10537 voltage-gated potassium channel; Provisional
Probab=98.03 E-value=5e-05 Score=81.82 Aligned_cols=53 Identities=25% Similarity=0.577 Sum_probs=48.1
Q ss_pred hhhHHHHHHHHHHhhccc--CCcCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1512 276 KQYLQSYYWCTLALTTIG--DLPRPRSKGEYFFVIVQLLFGLLLFATVLGHVANIV 329 (679)
Q Consensus 276 ~~Y~~slywa~~tlttvG--di~~p~t~~e~i~~i~~~i~G~~~~a~~ig~i~~ii 329 (679)
..+.+|+||+++|+||+| |+ .|.|..++++++++++.|+.++++.++.+..-+
T Consensus 167 ~s~~dA~y~svvt~tTvGyGdi-~p~t~~grl~~i~~ii~Gi~vf~~~is~i~~p~ 221 (393)
T PRK10537 167 ESLSTAFYFSIVTMSTVGYGDI-VPVSESARLFTISVIILGITVFATSISAIFGPV 221 (393)
T ss_pred CCHHHHHHhhheeeecccCCCC-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 468899999999999998 88 699999999999999999999999998887644
No 30
>PRK10402 DNA-binding transcriptional activator YeiL; Provisional
Probab=98.02 E-value=1.2e-06 Score=87.75 Aligned_cols=111 Identities=14% Similarity=0.043 Sum_probs=79.3
Q ss_pred HHHHHhccceEeCCCCEEEEeCCeeeeEEEEeeeeEEEEEehhhHHHHHhhChhHHHHHHHHHHHHHhhhccCcccCCCC
Q psy1512 468 CELVLRLRPVLFSPGDYICRKGNRRTASVRSVGYSDLFVLSKTDMWDVLKEYPAARVRLESIAVKRLQKYKRTPLEKGIS 547 (679)
Q Consensus 468 ~~L~~~l~~~~~~pge~I~~~Gd~r~asv~a~~~~~ly~I~~g~~~~vl~~~p~~~~~~~~~~~~~~~~~~~~~~~~g~~ 547 (679)
.++....+.+.|.+|++|+.+||+ .+.+|+|.+|.+...... ..|.-. .. .....++..+.
T Consensus 25 ~~i~~~~~~~~~~kge~l~~~G~~---------~~~~y~V~~G~v~v~~~~---~~G~e~------~~-~~~~~g~~~G~ 85 (226)
T PRK10402 25 FDVSADTELFHFLAREYIVQEGQQ---------PSYLFYLTRGRAKLYATL---ANGKVS------LI-DFFAAPCFIGE 85 (226)
T ss_pred HHHHhhhhheeeCCCCEEEcCCCC---------CceEEEEEeCEEEEEEEC---CCCCEe------ee-eecCCCCeEEe
Confidence 367778899999999999999998 778999977754221110 001100 00 01112332223
Q ss_pred CCCCCCCCcccccccccccceeecccchhHHHhhcChhHhhhhHHHHHHH
Q psy1512 548 PSPFPGNRRTASVRSVGYSDLFVLSKTDMWDVLKEYPAARVRLESIAVKR 597 (679)
Q Consensus 548 ~~~~~~~~r~atv~A~~~~~l~~L~r~~f~~il~~~P~~~~~l~~~~~~r 597 (679)
.+++.+.++++++.|.++|+++.+++++|.+++.++|.+...+...+.++
T Consensus 86 ~~~~~~~~~~~~~~A~~~~~i~~i~~~~~~~ll~~~p~~~~~~~~~l~~~ 135 (226)
T PRK10402 86 IELIDKDHETKAVQAIEECWCLALPMKDCRPLLLNDALFLRKLCKFLSHK 135 (226)
T ss_pred ehhhcCCCCCccEEEeccEEEEEEEHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 35678899999999999999999999999999999999988777766654
No 31
>PF00027 cNMP_binding: Cyclic nucleotide-binding domain; InterPro: IPR000595 Proteins that bind cyclic nucleotides (cAMP or cGMP) share a structural domain of about 120 residues [, , ]. The best studied of these proteins is the prokaryotic catabolite gene activator (also known as the cAMP receptor protein) (gene crp) where such a domain is known to be composed of three alpha-helices and a distinctive eight-stranded, antiparallel beta-barrel structure. There are six invariant amino acids in this domain, three of which are glycine residues that are thought to be essential for maintenance of the structural integrity of the beta-barrel. cAMP- and cGMP-dependent protein kinases (cAPK and cGPK) contain two tandem copies of the cyclic nucleotide-binding domain. The cAPK's are composed of two different subunits, a catalytic chain and a regulatory chain, which contains both copies of the domain. The cGPK's are single chain enzymes that include the two copies of the domain in their N-terminal section. Vertebrate cyclic nucleotide-gated ion-channels also contain this domain. Two such cations channels have been fully characterised, one is found in rod cells where it plays a role in visual signal transduction.; PDB: 1O7F_A 2BYV_E 3E97_A 3U10_A 2H6B_A 3SHR_A 2OZ6_A 1WGP_A 3LA2_A 3LA3_B ....
Probab=98.02 E-value=5.8e-06 Score=69.41 Aligned_cols=63 Identities=24% Similarity=0.381 Sum_probs=53.1
Q ss_pred CceecCCCCceEEEEEeeEEEEEec--CCc-eEeEEcCCCCeeeeeccccCC--ceEEEEeeeeeeee
Q psy1512 604 TPLEKGEVGKEMYIVNRGRLQVVAD--NGK-TVLATLRAGSYFGEISILNMG--TAGTNLIQECEDHI 666 (679)
Q Consensus 604 ~ii~~Ge~g~~~yiI~~G~v~v~~~--~~~-~~i~~L~~G~~FGE~all~~~--~~t~~a~~~~~~~~ 666 (679)
.++++|+.++.+|+|.+|.+.+... ++. ..+..+++|++||+.+++.+. ..+++|.++|+-..
T Consensus 9 ~i~~~g~~~~~~~~i~~G~v~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~a~~~~~~~~ 76 (91)
T PF00027_consen 9 VIYRQGDPCDHIYIILSGEVKVSSINEDGKEQIIFFLGPGDIFGEIELLTGKPSPFTVIALTDSEVLR 76 (91)
T ss_dssp EEEETTSBESEEEEEEESEEEEEEETTTSEEEEEEEEETTEEESGHHHHHTSBBSSEEEESSSEEEEE
T ss_pred EEEeCCCcCCEEEEEEECceEEEeceecceeeeecceeeeccccceeecCCCccEEEEEEccCEEEEE
Confidence 8899999999999999999999862 233 358899999999999999987 88888877765444
No 32
>smart00100 cNMP Cyclic nucleotide-monophosphate binding domain. Catabolite gene activator protein (CAP) is a prokaryotic homologue of eukaryotic cNMP-binding domains, present in ion channels, and cNMP-dependent kinases.
Probab=97.99 E-value=1.7e-06 Score=76.08 Aligned_cols=115 Identities=19% Similarity=0.204 Sum_probs=82.3
Q ss_pred ccccCChhHHHHHHHhccceEeCCCCEEEEeCCeeeeEEEEeeeeEEEEEehhhHHHHHhhChhHHHHHHHHHHHHHhhh
Q psy1512 458 IFQNTEAGFLCELVLRLRPVLFSPGDYICRKGNRRTASVRSVGYSDLFVLSKTDMWDVLKEYPAARVRLESIAVKRLQKY 537 (679)
Q Consensus 458 lF~~~~~~~l~~L~~~l~~~~~~pge~I~~~Gd~r~asv~a~~~~~ly~I~~g~~~~vl~~~p~~~~~~~~~~~~~~~~~ 537 (679)
+|.++++..+..++..++.+.|.+|++|+++||+ .+.+|+|.+|.+....... .|. . ..-.
T Consensus 1 ~f~~l~~~~~~~l~~~~~~~~~~~g~~l~~~g~~---------~~~~y~v~~G~v~~~~~~~---~g~------~-~~~~ 61 (120)
T smart00100 1 LFKNLDAEELRELADALEPVRYPAGEVIIRQGDV---------GDSFYIILSGEVRVYKVLE---DGR------E-QILG 61 (120)
T ss_pred CcCCCCHHHHHHHHHhceEEEeCCCCEEEeCCCc---------CCcEEEEEeeEEEEEEECC---CCc------e-EEEE
Confidence 5788999999999999999999999999999998 7889999877553222110 000 0 0000
Q ss_pred ccCcccCCCCCCCC--CCCCcccccccccccceeecccchhHHHhhcChhHhhhhH
Q psy1512 538 KRTPLEKGISPSPF--PGNRRTASVRSVGYSDLFVLSKTDMWDVLKEYPAARVRLE 591 (679)
Q Consensus 538 ~~~~~~~g~~~~~~--~~~~r~atv~A~~~~~l~~L~r~~f~~il~~~P~~~~~l~ 591 (679)
....+...+...++ ...++..++.|.+.|.++.++.+++.+.+..+|.....+.
T Consensus 62 ~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~ 117 (120)
T smart00100 62 ILGPGDFFGELALLTNSRRAASATAVALELATLLRIDFRDFLQLLQENPQLLLELL 117 (120)
T ss_pred eecCCceechhhhccCCCcccceEEEEEeeEEEEccCHHHHHHHHHHhHHHHHHHH
Confidence 11122222222333 4567888999999999999999999999999998876554
No 33
>PF00027 cNMP_binding: Cyclic nucleotide-binding domain; InterPro: IPR000595 Proteins that bind cyclic nucleotides (cAMP or cGMP) share a structural domain of about 120 residues [, , ]. The best studied of these proteins is the prokaryotic catabolite gene activator (also known as the cAMP receptor protein) (gene crp) where such a domain is known to be composed of three alpha-helices and a distinctive eight-stranded, antiparallel beta-barrel structure. There are six invariant amino acids in this domain, three of which are glycine residues that are thought to be essential for maintenance of the structural integrity of the beta-barrel. cAMP- and cGMP-dependent protein kinases (cAPK and cGPK) contain two tandem copies of the cyclic nucleotide-binding domain. The cAPK's are composed of two different subunits, a catalytic chain and a regulatory chain, which contains both copies of the domain. The cGPK's are single chain enzymes that include the two copies of the domain in their N-terminal section. Vertebrate cyclic nucleotide-gated ion-channels also contain this domain. Two such cations channels have been fully characterised, one is found in rod cells where it plays a role in visual signal transduction.; PDB: 1O7F_A 2BYV_E 3E97_A 3U10_A 2H6B_A 3SHR_A 2OZ6_A 1WGP_A 3LA2_A 3LA3_B ....
Probab=97.96 E-value=1.7e-07 Score=78.99 Aligned_cols=87 Identities=14% Similarity=0.197 Sum_probs=61.9
Q ss_pred ceEeCCCCEEEEeCCeeeeEEEEeeeeEEEEEehhhHHHHHhhChhHHHHHHHHHHHHHhhh----ccCcccCCCCCCCC
Q psy1512 476 PVLFSPGDYICRKGNRRTASVRSVGYSDLFVLSKTDMWDVLKEYPAARVRLESIAVKRLQKY----KRTPLEKGISPSPF 551 (679)
Q Consensus 476 ~~~~~pge~I~~~Gd~r~asv~a~~~~~ly~I~~g~~~~vl~~~p~~~~~~~~~~~~~~~~~----~~~~~~~g~~~~~~ 551 (679)
++.|.+|++|+++|++ ...+|+|.+|.+...... ..++. ....+...+...++
T Consensus 1 ~~~~~~g~~i~~~g~~---------~~~~~~i~~G~v~~~~~~--------------~~~~~~~~~~~~~g~~~g~~~~~ 57 (91)
T PF00027_consen 1 EKTYKKGEVIYRQGDP---------CDHIYIILSGEVKVSSIN--------------EDGKEQIIFFLGPGDIFGEIELL 57 (91)
T ss_dssp -EEESTTEEEEETTSB---------ESEEEEEEESEEEEEEET--------------TTSEEEEEEEEETTEEESGHHHH
T ss_pred CeEECCCCEEEeCCCc---------CCEEEEEEECceEEEece--------------ecceeeeecceeeeccccceeec
Confidence 3679999999999998 789999977754322111 00110 11122222223455
Q ss_pred CCCCcccccccccccceeecccchhHHHhhcChh
Q psy1512 552 PGNRRTASVRSVGYSDLFVLSKTDMWDVLKEYPA 585 (679)
Q Consensus 552 ~~~~r~atv~A~~~~~l~~L~r~~f~~il~~~P~ 585 (679)
.+.++.++++|.++|+++.|++++|.++++++|+
T Consensus 58 ~~~~~~~~~~a~~~~~~~~i~~~~~~~~~~~~p~ 91 (91)
T PF00027_consen 58 TGKPSPFTVIALTDSEVLRIPREDFLQLLQQDPE 91 (91)
T ss_dssp HTSBBSSEEEESSSEEEEEEEHHHHHHHHHHSHH
T ss_pred CCCccEEEEEEccCEEEEEEeHHHHHHHHHhCcC
Confidence 6779999999999999999999999999999996
No 34
>COG0664 Crp cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases [Signal transduction mechanisms]
Probab=97.93 E-value=1.5e-05 Score=78.43 Aligned_cols=64 Identities=23% Similarity=0.463 Sum_probs=54.3
Q ss_pred CCceecCCCCceEEEEEeeEEEEEec--C-CceEeEEcCCCCeeeeeccccCC--ceEEEEeeeeeeee
Q psy1512 603 RTPLEKGEVGKEMYIVNRGRLQVVAD--N-GKTVLATLRAGSYFGEISILNMG--TAGTNLIQECEDHI 666 (679)
Q Consensus 603 ~~ii~~Ge~g~~~yiI~~G~v~v~~~--~-~~~~i~~L~~G~~FGE~all~~~--~~t~~a~~~~~~~~ 666 (679)
..++++||.++.+|+|.+|.+.+... + .+..+..+++|++|||.+++.+. .++++|.++|+-..
T Consensus 32 ~~l~~~g~~~~~~y~v~~G~v~~~~~~~~G~~~~~~~~~~g~~fg~~~l~~~~~~~~~~~a~~~~~~~~ 100 (214)
T COG0664 32 EVLFTEGEEADSLYIILSGIVKLYANTEDGREIILGFLGPGDFFGELALLGGDPRSASAVALTDVEVLE 100 (214)
T ss_pred CEEEcCCCcCceEEEEEEeEEEEEEECCCCcEEEEEEecCCchhhhHHHhcCCCccceEEEcceEEEEE
Confidence 48899999999999999999999863 2 34678889999999999999975 88888888865544
No 35
>PRK10402 DNA-binding transcriptional activator YeiL; Provisional
Probab=97.87 E-value=3.2e-05 Score=77.52 Aligned_cols=70 Identities=19% Similarity=0.326 Sum_probs=56.4
Q ss_pred HhhhcCCCceecCCCCceEEEEEeeEEEEEe---cCCceEeEEcCCCCeeeeeccccCC--ceEEEEeeeeeeee
Q psy1512 597 RLQKYKRTPLEKGEVGKEMYIVNRGRLQVVA---DNGKTVLATLRAGSYFGEISILNMG--TAGTNLIQECEDHI 666 (679)
Q Consensus 597 rl~~~~~~ii~~Ge~g~~~yiI~~G~v~v~~---~~~~~~i~~L~~G~~FGE~all~~~--~~t~~a~~~~~~~~ 666 (679)
+..+.+..++++||..+.+|+|.+|.|.+.. ++.+..+..+++|++|||.+++++. ..++.|.++|+-..
T Consensus 34 ~~~~kge~l~~~G~~~~~~y~V~~G~v~v~~~~~~G~e~~~~~~~~g~~~G~~~~~~~~~~~~~~~A~~~~~i~~ 108 (226)
T PRK10402 34 FHFLAREYIVQEGQQPSYLFYLTRGRAKLYATLANGKVSLIDFFAAPCFIGEIELIDKDHETKAVQAIEECWCLA 108 (226)
T ss_pred eeeCCCCEEEcCCCCCceEEEEEeCEEEEEEECCCCCEeeeeecCCCCeEEeehhhcCCCCCccEEEeccEEEEE
Confidence 3344444899999999999999999999985 2334568889999999999998877 78888888877544
No 36
>PRK11161 fumarate/nitrate reduction transcriptional regulator; Provisional
Probab=97.87 E-value=7e-06 Score=82.79 Aligned_cols=126 Identities=8% Similarity=0.044 Sum_probs=85.2
Q ss_pred hccccccccCChhHHHHHHHhccc-eEeCCCCEEEEeCCeeeeEEEEeeeeEEEEEehhhHHHHHhhChhHHHHHHHHHH
Q psy1512 453 LKRVEIFQNTEAGFLCELVLRLRP-VLFSPGDYICRKGNRRTASVRSVGYSDLFVLSKTDMWDVLKEYPAARVRLESIAV 531 (679)
Q Consensus 453 l~~i~lF~~~~~~~l~~L~~~l~~-~~~~pge~I~~~Gd~r~asv~a~~~~~ly~I~~g~~~~vl~~~p~~~~~~~~~~~ 531 (679)
+++.+.|..++++.+..|....+. ..|.+||.|+++||+ .+.+|+|.+|-+...... + .|.
T Consensus 15 ~~~~~~~~~l~~~~l~~L~~~~~~~~~~~kge~l~~~Gd~---------~~~ly~v~~G~v~~~~~~-~--~G~------ 76 (235)
T PRK11161 15 ISQLCIPFTLNEHELDQLDNIIERKKPIQKGQTLFKAGDE---------LKSLYAIRSGTIKSYTIT-E--QGD------ 76 (235)
T ss_pred ccccccccCCCHHHHHHHHHhhhhceeecCCCEeECCCCC---------cceEEEEeeceEEEEEEC-C--CCC------
Confidence 445555557999999999988864 679999999999998 788999977743211100 0 000
Q ss_pred HHHhhhccCcccCCCCCCCCCCCCcccccccccccceeecccchhHHHhhcChhHhhhhHHHHHHHh
Q psy1512 532 KRLQKYKRTPLEKGISPSPFPGNRRTASVRSVGYSDLFVLSKTDMWDVLKEYPAARVRLESIAVKRL 598 (679)
Q Consensus 532 ~~~~~~~~~~~~~g~~~~~~~~~~r~atv~A~~~~~l~~L~r~~f~~il~~~P~~~~~l~~~~~~rl 598 (679)
+.... ....++..+...+ .+.+...++.|.++|+++.|++++|.+++.++|++...+...+.++.
T Consensus 77 e~i~~-~~~~gd~~g~~~~-~~~~~~~~~~a~~~~~i~~ip~~~f~~l~~~~p~~~~~~~~~~~~~~ 141 (235)
T PRK11161 77 EQITG-FHLAGDLVGFDAI-GSGQHPSFAQALETSMVCEIPFETLDDLSGKMPKLRQQIMRLMSGEI 141 (235)
T ss_pred EEEEE-eccCCceeccccc-cCCCCcceEEEeccEEEEEEEHHHHHHHHHHChHHHHHHHHHHHHHH
Confidence 00000 0112222222222 23455678999999999999999999999999999888777765543
No 37
>PRK11753 DNA-binding transcriptional dual regulator Crp; Provisional
Probab=97.84 E-value=3.5e-05 Score=76.24 Aligned_cols=66 Identities=24% Similarity=0.482 Sum_probs=53.6
Q ss_pred cCCCceecCCCCceEEEEEeeEEEEEe--c-CCceEeEEcCCCCeeeeeccccCC---ceEEEEeeeeeeee
Q psy1512 601 YKRTPLEKGEVGKEMYIVNRGRLQVVA--D-NGKTVLATLRAGSYFGEISILNMG---TAGTNLIQECEDHI 666 (679)
Q Consensus 601 ~~~~ii~~Ge~g~~~yiI~~G~v~v~~--~-~~~~~i~~L~~G~~FGE~all~~~---~~t~~a~~~~~~~~ 666 (679)
.+..++++|+..+.+|+|.+|.+++.. . +.+..+..+++|++|||.+++.+. ..++.|.++|+-..
T Consensus 27 kg~~l~~~g~~~~~~y~V~~G~v~~~~~~~~g~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~a~~~~~v~~ 98 (211)
T PRK11753 27 AKSTLIHAGEKAETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGELGLFEEGQERSAWVRAKTACEVAE 98 (211)
T ss_pred CCCEEEeCCCCCCeEEEEEeCEEEEEEECCCCCEEEEEEcCCCCEEeehhhccCCCCceEEEEEcCcEEEEE
Confidence 333889999999999999999999885 2 244668899999999999999864 56788887776554
No 38
>PRK09392 ftrB transcriptional activator FtrB; Provisional
Probab=97.84 E-value=2.7e-05 Score=78.55 Aligned_cols=70 Identities=17% Similarity=0.177 Sum_probs=57.9
Q ss_pred HhhhcCCCceecCCCCceEEEEEeeEEEEEe--cCCceEeEEcCCCCeeeeeccccCC--ceEEEEeeeeeeee
Q psy1512 597 RLQKYKRTPLEKGEVGKEMYIVNRGRLQVVA--DNGKTVLATLRAGSYFGEISILNMG--TAGTNLIQECEDHI 666 (679)
Q Consensus 597 rl~~~~~~ii~~Ge~g~~~yiI~~G~v~v~~--~~~~~~i~~L~~G~~FGE~all~~~--~~t~~a~~~~~~~~ 666 (679)
+..+.+..++++|+.++.+|+|.+|.|.+.. ++++..+..+++|++|||.+++++. .+++.|.++|+-..
T Consensus 33 ~~~~~ge~l~~~g~~~~~~~~v~~G~v~~~~~~~~~~~~i~~~~~g~~~g~~~~~~~~~~~~~~~A~~~~~~~~ 106 (236)
T PRK09392 33 QRFPPGTMLITEGEPADFLFVVLDGLVELSASSQDRETTLAILRPVSTFILAAVVLDAPYLMSARTLTRSRVLM 106 (236)
T ss_pred eecCCCCEEEeCCCccceEEEEEeCEEEEEEcCCCceEEEEEeCCCchhhhHHHhCCCCCceEEEEcCceEEEE
Confidence 3334444889999999999999999999975 4456678999999999999999877 78888888877665
No 39
>smart00100 cNMP Cyclic nucleotide-monophosphate binding domain. Catabolite gene activator protein (CAP) is a prokaryotic homologue of eukaryotic cNMP-binding domains, present in ion channels, and cNMP-dependent kinases.
Probab=97.79 E-value=6.1e-05 Score=66.03 Aligned_cols=64 Identities=23% Similarity=0.460 Sum_probs=49.4
Q ss_pred cCCCceecCCCCceEEEEEeeEEEEEec---CCceEeEEcCCCCeeeeeccccC-C---ceEEEEeeeeee
Q psy1512 601 YKRTPLEKGEVGKEMYIVNRGRLQVVAD---NGKTVLATLRAGSYFGEISILNM-G---TAGTNLIQECED 664 (679)
Q Consensus 601 ~~~~ii~~Ge~g~~~yiI~~G~v~v~~~---~~~~~i~~L~~G~~FGE~all~~-~---~~t~~a~~~~~~ 664 (679)
.+..++++|+..+.+|+|.+|.+++... +....+..+++|++|||.+++.+ . ..++.|.++|+-
T Consensus 24 ~g~~l~~~g~~~~~~y~v~~G~v~~~~~~~~g~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~v 94 (120)
T smart00100 24 AGEVIIRQGDVGDSFYIILSGEVRVYKVLEDGREQILGILGPGDFFGELALLTNSRRAASATAVALELATL 94 (120)
T ss_pred CCCEEEeCCCcCCcEEEEEeeEEEEEEECCCCceEEEEeecCCceechhhhccCCCcccceEEEEEeeEEE
Confidence 3348899999999999999999999863 34557889999999999999932 2 555555544443
No 40
>PRK13918 CRP/FNR family transcriptional regulator; Provisional
Probab=97.70 E-value=8.1e-05 Score=73.08 Aligned_cols=63 Identities=21% Similarity=0.332 Sum_probs=50.7
Q ss_pred CceecCC--CCceEEEEEeeEEEEEe--cC-CceEeEEcCCCCeeeeeccccCC-ceEEEEeeeeeeee
Q psy1512 604 TPLEKGE--VGKEMYIVNRGRLQVVA--DN-GKTVLATLRAGSYFGEISILNMG-TAGTNLIQECEDHI 666 (679)
Q Consensus 604 ~ii~~Ge--~g~~~yiI~~G~v~v~~--~~-~~~~i~~L~~G~~FGE~all~~~-~~t~~a~~~~~~~~ 666 (679)
.++++|| ..+.+|+|.+|.|.+.. .+ .+..+..+++||+|||.++..+. +.++.|.++|+-..
T Consensus 16 ~l~~~Gd~~~~~~~y~I~~G~vr~~~~~~~G~e~~l~~~~~Gd~~G~~~~~~~~~~~~~~A~~~~~v~~ 84 (202)
T PRK13918 16 VILYPGVPGPSDMLYRVRSGLVRLHTVDDEGNALTLRYVRPGEYFGEEALAGAERAYFAEAVTDSRIDV 84 (202)
T ss_pred EEEcCCCCCCCCeEEEEEeeEEEEEEECCCCCEEEEEEecCCCeechHHhcCCCCCceEEEcCceEEEE
Confidence 8899999 67999999999999986 23 34567788999999998776544 78888887776544
No 41
>TIGR03697 NtcA_cyano global nitrogen regulator NtcA, cyanobacterial. Members of this protein family, found in the cyanobacteria, are the global nitrogen regulator NtcA. This DNA-binding transcriptional regulator is required for expressing many different ammonia-repressible genes. The consensus NtcA-binding site is G T A N(8)T A C.
Probab=97.69 E-value=9.4e-05 Score=71.97 Aligned_cols=63 Identities=21% Similarity=0.311 Sum_probs=51.4
Q ss_pred CceecCCCCceEEEEEeeEEEEEe--cC-CceEeEEcCCCCeeeeeccccCC----ceEEEEeeeeeeee
Q psy1512 604 TPLEKGEVGKEMYIVNRGRLQVVA--DN-GKTVLATLRAGSYFGEISILNMG----TAGTNLIQECEDHI 666 (679)
Q Consensus 604 ~ii~~Ge~g~~~yiI~~G~v~v~~--~~-~~~~i~~L~~G~~FGE~all~~~----~~t~~a~~~~~~~~ 666 (679)
.++++||..+.+|+|.+|.|++.. .+ .+..+..+++|++|||.+++.+. ..++.|.++|+-..
T Consensus 3 ~l~~~g~~~~~~~~i~~G~v~~~~~~~~G~e~~l~~~~~g~~~G~~~~~~~~~~~~~~~~~A~~~~~v~~ 72 (193)
T TIGR03697 3 TIFFPGDPAEKVYFLRRGAVKLSRVYESGEEITVALLRENSVFGVLSLITGHRSDRFYHAVAFTRVELLA 72 (193)
T ss_pred ceecCCCCCCcEEEEEecEEEEEEeCCCCcEeeeEEccCCCEeeeeeeccCCCCccceEEEEecceEEEE
Confidence 578999999999999999999875 23 34558899999999999999876 25677887776544
No 42
>PRK09391 fixK transcriptional regulator FixK; Provisional
Probab=97.67 E-value=1e-05 Score=81.28 Aligned_cols=107 Identities=8% Similarity=0.000 Sum_probs=76.6
Q ss_pred HHHhccceEeCCCCEEEEeCCeeeeEEEEeeeeEEEEEehhhHHHHHhhChhHHHHHHHHHHHHHhh-hccCcccCCCCC
Q psy1512 470 LVLRLRPVLFSPGDYICRKGNRRTASVRSVGYSDLFVLSKTDMWDVLKEYPAARVRLESIAVKRLQK-YKRTPLEKGISP 548 (679)
Q Consensus 470 L~~~l~~~~~~pge~I~~~Gd~r~asv~a~~~~~ly~I~~g~~~~vl~~~p~~~~~~~~~~~~~~~~-~~~~~~~~g~~~ 548 (679)
+....+.+.|.+|++|+.+||+ .+.+|+|.+|.+...... + .++ ........|+..
T Consensus 34 ~~~~~~~~~~~kge~l~~~Gd~---------~~~ly~I~~G~vkl~~~~-~-------------~G~e~i~~~~~~Gd~f 90 (230)
T PRK09391 34 AGLVASEFSYKKGEEIYGEGEP---------ADYVYQVESGAVRTYRLL-S-------------DGRRQIGAFHLPGDVF 90 (230)
T ss_pred ccceeeeEEECCCCEEECCCCC---------CCeEEEEEeCEEEEEEEC-C-------------CCcEEEEEEecCCcee
Confidence 4445678899999999999998 788999977754211100 0 011 011111234444
Q ss_pred CCCCCCCcccccccccccceeecccchhHHHhhcChhHhhhhHHHHHHHhh
Q psy1512 549 SPFPGNRRTASVRSVGYSDLFVLSKTDMWDVLKEYPAARVRLESIAVKRLQ 599 (679)
Q Consensus 549 ~~~~~~~r~atv~A~~~~~l~~L~r~~f~~il~~~P~~~~~l~~~~~~rl~ 599 (679)
++..+.++.++++|.++|+++.+++++|.+++.++|++...+...+.++++
T Consensus 91 G~~~~~~~~~~~~A~~ds~v~~i~~~~f~~l~~~~p~l~~~l~~~l~~~l~ 141 (230)
T PRK09391 91 GLESGSTHRFTAEAIVDTTVRLIKRRSLEQAAATDVDVARALLSLTAGGLR 141 (230)
T ss_pred cccCCCcCCeEEEEcCceEEEEEEHHHHHHHHhhChHHHHHHHHHHHHHHH
Confidence 455677889999999999999999999999999999999988777666444
No 43
>cd00038 CAP_ED effector domain of the CAP family of transcription factors; members include CAP (or cAMP receptor protein (CRP)), which binds cAMP, FNR (fumarate and nitrate reduction), which uses an iron-sulfur cluster to sense oxygen) and CooA, a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. Cyclic nucleotide-binding domain similar to CAP are also present in cAMP- and cGMP-dependent protein kinases (cAPK and cGPK) and vertebrate cyclic nucleotide-gated ion-channels. Cyclic nucleotide-monophosphate binding domain; proteins that bind cyclic nucleotides (cAMP or cGMP) share a structural domain of about 120 residues; the best studied is the prokaryotic catabolite gene activator, CAP, where such a domain is known to be composed of three alpha-helices and a distinctive eight-stranded, antiparallel beta-barrel structure; three conserved glycine residues are thought to be essential for maintenance of
Probab=97.58 E-value=0.00014 Score=63.29 Aligned_cols=65 Identities=23% Similarity=0.461 Sum_probs=53.2
Q ss_pred CCCceecCCCCceEEEEEeeEEEEEecC---CceEeEEcCCCCeeeeeccccCC--ceEEEEeeeeeeee
Q psy1512 602 KRTPLEKGEVGKEMYIVNRGRLQVVADN---GKTVLATLRAGSYFGEISILNMG--TAGTNLIQECEDHI 666 (679)
Q Consensus 602 ~~~ii~~Ge~g~~~yiI~~G~v~v~~~~---~~~~i~~L~~G~~FGE~all~~~--~~t~~a~~~~~~~~ 666 (679)
...++.+|+..+.+|+|.+|.+.+.... .+..+..+++|++||+.+++.+. ..++.|.++|.-..
T Consensus 25 g~~l~~~~~~~~~~~~i~~G~v~~~~~~~~g~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~a~~~~~~~~ 94 (115)
T cd00038 25 GEVIIRQGDPADSLYIVLSGSVEVYKLDEDGREQIVGFLGPGDLFGELALLGNGPRSATVRALTDSELLV 94 (115)
T ss_pred CCEEEcCCCCCCeEEEEEeCEEEEEEECCCCcEEEEEecCCccCcChHHHhcCCCCCceEEEcCceEEEE
Confidence 3388999999999999999999998633 34678899999999999998655 77788876666544
No 44
>PRK11161 fumarate/nitrate reduction transcriptional regulator; Provisional
Probab=97.37 E-value=0.00057 Score=68.82 Aligned_cols=66 Identities=14% Similarity=0.110 Sum_probs=52.1
Q ss_pred cCCCceecCCCCceEEEEEeeEEEEEec--C-CceEeEEcCCCCeeeeeccccCC-ceEEEEeeeeeeee
Q psy1512 601 YKRTPLEKGEVGKEMYIVNRGRLQVVAD--N-GKTVLATLRAGSYFGEISILNMG-TAGTNLIQECEDHI 666 (679)
Q Consensus 601 ~~~~ii~~Ge~g~~~yiI~~G~v~v~~~--~-~~~~i~~L~~G~~FGE~all~~~-~~t~~a~~~~~~~~ 666 (679)
.+..++++||..+.+|+|.+|.|++... + .+..+..+++|++||+.++..+. ..++.|.++++-..
T Consensus 44 kge~l~~~Gd~~~~ly~v~~G~v~~~~~~~~G~e~i~~~~~~gd~~g~~~~~~~~~~~~~~a~~~~~i~~ 113 (235)
T PRK11161 44 KGQTLFKAGDELKSLYAIRSGTIKSYTITEQGDEQITGFHLAGDLVGFDAIGSGQHPSFAQALETSMVCE 113 (235)
T ss_pred CCCEeECCCCCcceEEEEeeceEEEEEECCCCCEEEEEeccCCceeccccccCCCCcceEEEeccEEEEE
Confidence 3348999999999999999999999862 2 34467788999999998876555 66788887765544
No 45
>KOG2302|consensus
Probab=97.37 E-value=0.0089 Score=68.09 Aligned_cols=88 Identities=17% Similarity=0.352 Sum_probs=56.3
Q ss_pred CceEEcCCChhHH---------HHHHHHHHHHHHHHHHHHHhhhcccccccchhhHHH-HHHHHHHHHHHHHHhhhe-eE
Q psy1512 87 LTFVFDPAGRFSY---------YWSMIVSLAFLYNFWVIIYRFAFQEINRESLVIWFC-LDYMADLMYVIDILIHFR-TG 155 (679)
Q Consensus 87 ~~~vi~P~s~~~~---------~W~~i~~~~~~~~~~~ip~~~~F~~~~~~~~~~~~~-~~~i~d~~f~~Di~l~f~-t~ 155 (679)
..+++.|.++||. .+|.++++++++|++.+..+ .+.......-.++.. -+++..++|++++.++-. .|
T Consensus 1103 s~ylF~pQ~rFR~lc~~ii~hk~Fd~vVl~~IfLNcVtiale-rp~i~~~s~EriFltlsnyIFtaIfV~Em~lKVVALG 1181 (1956)
T KOG2302|consen 1103 SKYLFSPQNRFRVLCQNIIQHKAFDTVVLFFIFLNCVTIALE-RPAIVEGSTERIFLTLSNYIFTAIFVVEMTLKVVALG 1181 (1956)
T ss_pred HHHhcCcccHHHHHHHHHHHHhhhhheehhhhhhhhHHHHhc-ccccccCcceEEEEEecchHHHHHHHHHHHHHHHhhh
Confidence 4579999999876 46667778888888887653 222111111122233 348899999999988653 22
Q ss_pred EEECCeEeeCHHHHHHHHhcCCCceehhhh
Q psy1512 156 YLEDGVLQTDSTKLRDHYMNSTTFYIDCLC 185 (679)
Q Consensus 156 y~~~g~~v~d~~~I~~~Ylks~~f~~Dlls 185 (679)
.+- | -..|+++.|..+|.+-
T Consensus 1182 l~f-g---------e~aYl~ssWN~LDgfl 1201 (1956)
T KOG2302|consen 1182 LYF-G---------EQAYLRSSWNVLDGFL 1201 (1956)
T ss_pred hcc-c---------hHHHHHHHHHhhhHHH
Confidence 111 1 2579998899999654
No 46
>KOG3684|consensus
Probab=97.33 E-value=0.0054 Score=64.90 Aligned_cols=91 Identities=15% Similarity=0.249 Sum_probs=76.2
Q ss_pred hhhhhHHHHHHHHHHhhccc--CCcCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1512 274 VVKQYLQSYYWCTLALTTIG--DLPRPRSKGEYFFVIVQLLFGLLLFATVLGHVANIVTSVSAARKEFQAKLDGVKTYMR 351 (679)
Q Consensus 274 ~~~~Y~~slywa~~tlttvG--di~~p~t~~e~i~~i~~~i~G~~~~a~~ig~i~~ii~~~~~~~~~~~~~~~~l~~~m~ 351 (679)
....|+.|+|....|..++| |+ .|.|..++..++++-++|.++.|.+++.|+--+. ..+--+.+++||-
T Consensus 284 ~~~~~~nsmWli~iTFlsiGYGDi-VP~TycGr~v~l~tGivGa~~sallvAvisRKLe--------Lt~aEKhVhNFMm 354 (489)
T KOG3684|consen 284 VTINYLNSMWLIAITFLSIGYGDI-VPNTYCGRGVALLTGIVGAGCSSLLVAVIARKLE--------LTKAEKHVHNFMM 354 (489)
T ss_pred hHHHHHhhHHHHHHHHhhcccCcc-cCCccccchHHHHhhhhhhhHHHHHHHHHHHHHH--------HHHHHHHHHHHHH
Confidence 45689999999999998886 99 5999999999999999999999999988875543 3333457999999
Q ss_pred hCCCCHHHHHHHHHHHHHHhhh
Q psy1512 352 MRRVPNALQVKVIKWFDYLWLT 373 (679)
Q Consensus 352 ~~~lp~~l~~rv~~y~~~~w~~ 373 (679)
+.++-+++++-..+=++..|--
T Consensus 355 DtqLTk~~KnAAA~VLqeTW~i 376 (489)
T KOG3684|consen 355 DTQLTKEHKNAAANVLQETWLI 376 (489)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999888888877777754
No 47
>TIGR03697 NtcA_cyano global nitrogen regulator NtcA, cyanobacterial. Members of this protein family, found in the cyanobacteria, are the global nitrogen regulator NtcA. This DNA-binding transcriptional regulator is required for expressing many different ammonia-repressible genes. The consensus NtcA-binding site is G T A N(8)T A C.
Probab=97.09 E-value=0.00011 Score=71.42 Aligned_cols=100 Identities=13% Similarity=0.031 Sum_probs=65.7
Q ss_pred CCEEEEeCCeeeeEEEEeeeeEEEEEehhhHHHHHhhChhHHHHHHHHHHHHHhhhccCcccCCCCCCCCCCCC--cccc
Q psy1512 482 GDYICRKGNRRTASVRSVGYSDLFVLSKTDMWDVLKEYPAARVRLESIAVKRLQKYKRTPLEKGISPSPFPGNR--RTAS 559 (679)
Q Consensus 482 ge~I~~~Gd~r~asv~a~~~~~ly~I~~g~~~~vl~~~p~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~--r~at 559 (679)
|+.|+++||+ .+.+|+|.+|.+...... + .|.- ..-.....++..+..+++.+.+ +.++
T Consensus 1 g~~l~~~g~~---------~~~~~~i~~G~v~~~~~~-~--~G~e-------~~l~~~~~g~~~G~~~~~~~~~~~~~~~ 61 (193)
T TIGR03697 1 GKTIFFPGDP---------AEKVYFLRRGAVKLSRVY-E--SGEE-------ITVALLRENSVFGVLSLITGHRSDRFYH 61 (193)
T ss_pred CCceecCCCC---------CCcEEEEEecEEEEEEeC-C--CCcE-------eeeEEccCCCEeeeeeeccCCCCccceE
Confidence 7899999998 778999977754221100 0 0000 0000112223222334555554 4578
Q ss_pred cccccccceeecccchhHHHhhcChhHhhhhHHHHHHHhhh
Q psy1512 560 VRSVGYSDLFVLSKTDMWDVLKEYPAARVRLESIAVKRLQK 600 (679)
Q Consensus 560 v~A~~~~~l~~L~r~~f~~il~~~P~~~~~l~~~~~~rl~~ 600 (679)
++|.++|+++.+++++|.+++.++|++...+...+.++++.
T Consensus 62 ~~A~~~~~v~~i~~~~~~~l~~~~p~l~~~~~~~l~~~l~~ 102 (193)
T TIGR03697 62 AVAFTRVELLAVPIEQVEKAIEEDPDLSMLLLQGLSSRILQ 102 (193)
T ss_pred EEEecceEEEEeeHHHHHHHHHHChHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999998888776664443
No 48
>PLN03223 Polycystin cation channel protein; Provisional
Probab=96.85 E-value=0.1 Score=62.36 Aligned_cols=32 Identities=19% Similarity=0.374 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1512 304 YFFVIVQLLFGLLLFATVLGHVANIVTSVSAA 335 (679)
Q Consensus 304 ~i~~i~~~i~G~~~~a~~ig~i~~ii~~~~~~ 335 (679)
..|..+++++.+++.-++++.|...+......
T Consensus 1397 IYFfSFILLV~FILLNMFIAII~DSFsEVK~d 1428 (1634)
T PLN03223 1397 IYFYSYNIFVFMILFNFLLAIICDAFGEVKAN 1428 (1634)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34666666677777777777777777665443
No 49
>PRK09391 fixK transcriptional regulator FixK; Provisional
Probab=96.78 E-value=0.0032 Score=63.24 Aligned_cols=62 Identities=19% Similarity=0.221 Sum_probs=47.5
Q ss_pred CCceecCCCCceEEEEEeeEEEEEe--cCC-ceEeEEcCCCCeeeeeccccCCceEEEEeeeeeee
Q psy1512 603 RTPLEKGEVGKEMYIVNRGRLQVVA--DNG-KTVLATLRAGSYFGEISILNMGTAGTNLIQECEDH 665 (679)
Q Consensus 603 ~~ii~~Ge~g~~~yiI~~G~v~v~~--~~~-~~~i~~L~~G~~FGE~all~~~~~t~~a~~~~~~~ 665 (679)
..++.+||.++.+|+|.+|.|.+.. .+| +..+..+++|++||+.+. .....++.|.++|+-.
T Consensus 47 e~l~~~Gd~~~~ly~I~~G~vkl~~~~~~G~e~i~~~~~~Gd~fG~~~~-~~~~~~~~A~~ds~v~ 111 (230)
T PRK09391 47 EEIYGEGEPADYVYQVESGAVRTYRLLSDGRRQIGAFHLPGDVFGLESG-STHRFTAEAIVDTTVR 111 (230)
T ss_pred CEEECCCCCCCeEEEEEeCEEEEEEECCCCcEEEEEEecCCceecccCC-CcCCeEEEEcCceEEE
Confidence 3889999999999999999999985 233 456778899999998531 1126778888777533
No 50
>PRK13918 CRP/FNR family transcriptional regulator; Provisional
Probab=96.57 E-value=0.00053 Score=67.27 Aligned_cols=84 Identities=19% Similarity=0.092 Sum_probs=52.6
Q ss_pred hccceEeCCCCEEEEeCC--eeeeEEEEeeeeEEEEEehhhHHHHHhhChhHHHHHHHHHHHHHhhhccCcccCCCCCCC
Q psy1512 473 RLRPVLFSPGDYICRKGN--RRTASVRSVGYSDLFVLSKTDMWDVLKEYPAARVRLESIAVKRLQKYKRTPLEKGISPSP 550 (679)
Q Consensus 473 ~l~~~~~~pge~I~~~Gd--~r~asv~a~~~~~ly~I~~g~~~~vl~~~p~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 550 (679)
..+...|.+|++|+.+|| + .+.+|+|.+|.+...... ++ |. + ........++..+..+
T Consensus 5 ~~~~~~~~kg~~l~~~Gd~~~---------~~~~y~I~~G~vr~~~~~-~~--G~------e-~~l~~~~~Gd~~G~~~- 64 (202)
T PRK13918 5 VVDTVTYRPGAVILYPGVPGP---------SDMLYRVRSGLVRLHTVD-DE--GN------A-LTLRYVRPGEYFGEEA- 64 (202)
T ss_pred ccceeEecCCCEEEcCCCCCC---------CCeEEEEEeeEEEEEEEC-CC--CC------E-EEEEEecCCCeechHH-
Confidence 356788999999999999 5 578888866643221100 00 00 0 0001112333322223
Q ss_pred CCCCCcccccccccccceeecccchh
Q psy1512 551 FPGNRRTASVRSVGYSDLFVLSKTDM 576 (679)
Q Consensus 551 ~~~~~r~atv~A~~~~~l~~L~r~~f 576 (679)
+.+.++++++.|.++|+++.|++++|
T Consensus 65 ~~~~~~~~~~~A~~~~~v~~i~~~~~ 90 (202)
T PRK13918 65 LAGAERAYFAEAVTDSRIDVLNPALM 90 (202)
T ss_pred hcCCCCCceEEEcCceEEEEEEHHHc
Confidence 34678999999999999999999877
No 51
>PF01007 IRK: Inward rectifier potassium channel; InterPro: IPR013521 Potassium channels are the most diverse group of the ion channel family [, ]. They are important in shaping the action potential, and in neuronal excitability and plasticity []. The potassium channel family is composed of several functionally distinct isoforms, which can be broadly separated into 2 groups []: the practically non-inactivating 'delayed' group and the rapidly inactivating 'transient' group. These are all highly similar proteins, with only small amino acid changes causing the diversity of the voltage-dependent gating mechanism, channel conductance and toxin binding properties. Each type of K+ channel is activated by different signals and conditions depending on their type of regulation: some open in response to depolarisation of the plasma membrane; others in response to hyperpolarisation or an increase in intracellular calcium concentration; some can be regulated by binding of a transmitter, together with intracellular kinases; while others are regulated by GTP-binding proteins or other second messengers []. In eukaryotic cells, K+ channels are involved in neural signalling and generation of the cardiac rhythm, act as effectors in signal transduction pathways involving G protein-coupled receptors (GPCRs) and may have a role in target cell lysis by cytotoxic T-lymphocytes []. In prokaryotic cells, they play a role in the maintenance of ionic homeostasis []. All K+ channels discovered so far possess a core of alpha subunits, each comprising either one or two copies of a highly conserved pore loop domain (P-domain). The P-domain contains the sequence (T/SxxTxGxG), which has been termed the K+ selectivity sequence. In families that contain one P-domain, four subunits assemble to form a selective pathway for K+ across the membrane. However, it remains unclear how the 2 P-domain subunits assemble to form a selective pore. The functional diversity of these families can arise through homo- or hetero-associations of alpha subunits or association with auxiliary cytoplasmic beta subunits. K+ channel subunits containing one pore domain can be assigned into one of two superfamilies: those that possess six transmembrane (TM) domains and those that possess only two TM domains. The six TM domain superfamily can be further subdivided into conserved gene families: the voltage-gated (Kv) channels; the KCNQ channels (originally known as KvLQT channels); the EAG-like K+ channels; and three types of calcium (Ca)-activated K+ channels (BK, IK and SK) []. The 2TM domain family comprises inward-rectifying K+ channels. In addition, there are K+ channel alpha-subunits that possess two P-domains. These are usually highly regulated K+ selective leak channels. Inwardly-rectifying potassium channels (Kir) are the principal class of two-TM domain potassium channels. They are characterised by the property of inward-rectification, which is described as the ability to allow large inward currents and smaller outward currents. Inwardly rectifying potassium channels (Kir) are responsible for regulating diverse processes including: cellular excitability, vascular tone, heart rate, renal salt flow, and insulin release []. To date, around twenty members of this superfamily have been cloned, which can be grouped into six families by sequence similarity, and these are designated Kir1.x-6.x [, ]. Cloned Kir channel cDNAs encode proteins of between ~370-500 residues, both N- and C-termini are thought to be cytoplasmic, and the N terminus lacks a signal sequence. Kir channel alpha subunits possess only 2TM domains linked with a P-domain. Thus, Kir channels share similarity with the fifth and sixth domains, and P-domain of the other families. It is thought that four Kir subunits assemble to form a tetrameric channel complex, which may be hetero- or homomeric [].; PDB: 3AT9_A 3AUW_D 3SYA_A 3ATE_A 3SYQ_A 3SYO_A 3ATB_A 3SYC_A 3AT8_A 3ATA_A ....
Probab=96.46 E-value=0.016 Score=61.11 Aligned_cols=91 Identities=27% Similarity=0.394 Sum_probs=62.1
Q ss_pred HHHHHHHHHHHHHHHHHhcCCC-C----CCCcccCCCCCchhhhhhHHHHHHHHHHhhccc--C-CcCCCCchhHHHHHH
Q psy1512 238 YLLVIFHWNGCLYHIIYKNDGF-G----SRNWVYGDSDTTDVVKQYLQSYYWCTLALTTIG--D-LPRPRSKGEYFFVIV 309 (679)
Q Consensus 238 ~~l~~~H~~aCl~~~i~~~~~~-~----~~~Wi~~~~~~~~~~~~Y~~slywa~~tlttvG--d-i~~p~t~~e~i~~i~ 309 (679)
..++..-++|++||+++...+. . ..+|... ..-...+..+++|++.|+||+| . .++|......++.++
T Consensus 44 ~y~~~~~~Fa~~y~~i~~~~gdl~~~~~~~~~~~C----v~~~~~f~~aF~FSveT~tTIGYG~~~~~~~c~~a~~l~~~ 119 (336)
T PF01007_consen 44 SYLLSWLFFALLYYLIAYSHGDLEPIHADSNWTPC----VSNVNSFTSAFLFSVETQTTIGYGSRYPTPECPYAIFLVTI 119 (336)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTSCCTTTSBTTS-TS----ECT-TTHHHHHHHHHHHHTT---SSSEB-CSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhcccchhcccccCCCCc----eecccchhhheeEEEEEEEEeccCCcccCCCcchhHHHHHH
Confidence 3444555689999998764321 1 1122211 1124579999999999999998 2 236888888899999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy1512 310 QLLFGLLLFATVLGHVANIVTSV 332 (679)
Q Consensus 310 ~~i~G~~~~a~~ig~i~~ii~~~ 332 (679)
-+++|+++.|+++|.+-+-++.-
T Consensus 120 q~~~g~l~~a~~~Glvfar~srP 142 (336)
T PF01007_consen 120 QSLVGLLLDAFMTGLVFARFSRP 142 (336)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTSC
T ss_pred HHHHHHHHHHHHHHHHHHHhcCc
Confidence 99999999999999888776553
No 52
>KOG2968|consensus
Probab=96.33 E-value=0.002 Score=72.99 Aligned_cols=112 Identities=21% Similarity=0.269 Sum_probs=83.4
Q ss_pred hhHHHHHHHhccceEeCCCCEEEEeCCeeeeEEEEeeeeEEEEEehhhHHHHHhhChhHHHHHHHHHHHHHhhhc-cCcc
Q psy1512 464 AGFLCELVLRLRPVLFSPGDYICRKGNRRTASVRSVGYSDLFVLSKTDMWDVLKEYPAARVRLESIAVKRLQKYK-RTPL 542 (679)
Q Consensus 464 ~~~l~~L~~~l~~~~~~pge~I~~~Gd~r~asv~a~~~~~ly~I~~g~~~~vl~~~p~~~~~~~~~~~~~~~~~~-~~~~ 542 (679)
+.++..+-.++.-....||+.+++|||. .+++|++-.|. +..+..+..++.. ....
T Consensus 498 sp~lr~~D~AldWv~l~~g~alyrqgD~---------Sd~iyvVl~GR--------------lRsv~~~~~~k~~i~~Ey 554 (1158)
T KOG2968|consen 498 SPFLRKLDFALDWVRLEPGQALYRQGDS---------SDSIYVVLNGR--------------LRSVIRQSGGKKEIVGEY 554 (1158)
T ss_pred CHHHhhhhhhcceEEeccccHHHhcCCc---------cCcEEEEecCe--------------ehhhhhccCccchhhhhc
Confidence 3466677777888999999999999999 78999995554 4444332222221 1111
Q ss_pred cCCCC---CCCCCCCCcccccccccccceeecccchhHHHhhcChhHhhhhHHHHHHHh
Q psy1512 543 EKGIS---PSPFPGNRRTASVRSVGYSDLFVLSKTDMWDVLKEYPAARVRLESIAVKRL 598 (679)
Q Consensus 543 ~~g~~---~~~~~~~~r~atv~A~~~~~l~~L~r~~f~~il~~~P~~~~~l~~~~~~rl 598 (679)
..|+. ....+++||..|+.|+.++++.+|+..-|..+..+||....++...+.++.
T Consensus 555 grGd~iG~~E~lt~~~R~tTv~AvRdSelariPe~l~~~ik~ryP~v~~rl~~ll~~~~ 613 (1158)
T KOG2968|consen 555 GRGDLIGEVEMLTKQPRATTVMAVRDSELARIPEGLLNFIKLRYPQVVTRLIKLLAEKI 613 (1158)
T ss_pred cCcceeehhHHhhcCCccceEEEEeehhhhhccHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 11222 234578999999999999999999999999999999999998888877754
No 53
>KOG0501|consensus
Probab=95.95 E-value=0.0076 Score=65.12 Aligned_cols=61 Identities=28% Similarity=0.452 Sum_probs=51.1
Q ss_pred CceecCCCCceEEEEEeeEEEEEecCCceEeEEcCCCCeeeeecc----ccCCceEEEEeeeeeeee
Q psy1512 604 TPLEKGEVGKEMYIVNRGRLQVVADNGKTVLATLRAGSYFGEISI----LNMGTAGTNLIQECEDHI 666 (679)
Q Consensus 604 ~ii~~Ge~g~~~yiI~~G~v~v~~~~~~~~i~~L~~G~~FGE~al----l~~~~~t~~a~~~~~~~~ 666 (679)
.+...||.-|...|+.+|..+|+.++ .+++.||+||+||+.-- +....|.|+|++.|+-+.
T Consensus 581 LlYHtGESvDaLcFvVsGSLEVIQDD--EVVAILGKGDVFGD~FWK~~t~~qs~ANVRALTYcDLH~ 645 (971)
T KOG0501|consen 581 LLYHTGESVDALCFVVSGSLEVIQDD--EVVAILGKGDVFGDEFWKENTLGQSAANVRALTYCDLHM 645 (971)
T ss_pred eeeecCCccceEEEEEecceEEeecC--cEEEEeecCccchhHHhhhhhhhhhhhhhhhhhhhhhhH
Confidence 77899999999999999999999874 47999999999998643 333389999998887543
No 54
>KOG3542|consensus
Probab=95.81 E-value=0.029 Score=61.65 Aligned_cols=67 Identities=19% Similarity=0.235 Sum_probs=50.9
Q ss_pred CcchHHHHHHHhhhhhhccccccccCChhHHHHHHHhccceEeCCCCEEEEeCCeeeeEEEEeeeeEEEEEehhhH
Q psy1512 437 PDKLKAEIAINVHLDTLKRVEIFQNTEAGFLCELVLRLRPVLFSPGDYICRKGNRRTASVRSVGYSDLFVLSKTDM 512 (679)
Q Consensus 437 ~~~Lr~ei~~~~~~~~l~~i~lF~~~~~~~l~~L~~~l~~~~~~pge~I~~~Gd~r~asv~a~~~~~ly~I~~g~~ 512 (679)
|+.|+.-....--...|.+...|.|+-..-++.++...+.+.++...++|+.||. ...-|++-.|.+
T Consensus 23 ~~~~~t~~~~rN~~~~lh~ld~~snl~~~~lk~l~~~aryer~~g~~ilf~~~~v---------ar~wyillsgsv 89 (1283)
T KOG3542|consen 23 PPHLRTPDDIRNVYEQLHQLDTFSNLFIGPLKALCKTARYERHPGQYILFRDGDV---------ARSWYILLSGSV 89 (1283)
T ss_pred CcccCChhhhhhHHHHHhhhhhhhhhhhhhHHHhhhhhhhhcCCCceEEecccch---------hhheeeeeccce
Confidence 4555544444333457888899999999999999999999999888888999997 556677766654
No 55
>KOG4404|consensus
Probab=95.71 E-value=0.031 Score=56.78 Aligned_cols=59 Identities=32% Similarity=0.558 Sum_probs=45.9
Q ss_pred hhHHHHHHHHHHhhccc--CCcCCCC-------chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1512 277 QYLQSYYWCTLALTTIG--DLPRPRS-------KGEYFFVIVQLLFGLLLFATVLGHVANIVTSVSAA 335 (679)
Q Consensus 277 ~Y~~slywa~~tlttvG--di~~p~t-------~~e~i~~i~~~i~G~~~~a~~ig~i~~ii~~~~~~ 335 (679)
.|++|+||+++|+||+| |.+.-++ +.-+.++.+.+++|+.+++-.++.+.-.+..++..
T Consensus 186 syfds~YyCFITltTIGFGDyValQ~~~alq~qplYv~~sf~fIL~Gl~vi~a~~NllvLrf~t~~~~ 253 (350)
T KOG4404|consen 186 SYFDSYYYCFITLTTIGFGDYVALQQDAALQSQPLYVFFSFVFILLGLCVIYALLNLLVLRFMTMNAE 253 (350)
T ss_pred chhhhhheeeeeeeeccccchhhhcchhhhhCCCceehHhHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Confidence 69999999999999997 8753333 23456777888899999998888888777766654
No 56
>KOG1418|consensus
Probab=95.65 E-value=0.017 Score=63.43 Aligned_cols=58 Identities=21% Similarity=0.442 Sum_probs=52.5
Q ss_pred hhhHHHHHHHHHHhhccc--CCcCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1512 276 KQYLQSYYWCTLALTTIG--DLPRPRSKGEYFFVIVQLLFGLLLFATVLGHVANIVTSVSA 334 (679)
Q Consensus 276 ~~Y~~slywa~~tlttvG--di~~p~t~~e~i~~i~~~i~G~~~~a~~ig~i~~ii~~~~~ 334 (679)
..+..|+|++.+++||+| ++ .|.|..+++++|+..++|+-++..+++.++..+...-.
T Consensus 114 W~f~~al~fs~tv~TTIGYG~i-~P~T~~Gr~~~i~YaliGIPl~li~l~~~g~~l~~~~~ 173 (433)
T KOG1418|consen 114 WSFSSALLFSITVITTIGYGNI-APRTDAGRLFTILYALVGIPLMLLILADIGKFLADSLR 173 (433)
T ss_pred eecchhHhhhhheeeeccCCcc-cCCcCcchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 367889999999999998 88 79999999999999999999999999999998876544
No 57
>COG2905 Predicted signal-transduction protein containing cAMP-binding and CBS domains [Signal transduction mechanisms]
Probab=95.60 E-value=0.024 Score=61.85 Aligned_cols=83 Identities=19% Similarity=0.216 Sum_probs=58.1
Q ss_pred hHHHhhcChhHhhhhHHHHHH-------HhhhcCCCceecCCCCceEEEEEeeEEEEEecCCceEeEEcCCCCeeeeecc
Q psy1512 576 MWDVLKEYPAARVRLESIAVK-------RLQKYKRTPLEKGEVGKEMYIVNRGRLQVVADNGKTVLATLRAGSYFGEISI 648 (679)
Q Consensus 576 f~~il~~~P~~~~~l~~~~~~-------rl~~~~~~ii~~Ge~g~~~yiI~~G~v~v~~~~~~~~i~~L~~G~~FGE~al 648 (679)
..+.++++|-+...-.+.+.+ +..+....++.-|.+-..+|+|.+|.|+|...+|+ +++.+..||.||=++|
T Consensus 5 ~~~Fl~~~pPF~~L~~eel~~L~~~l~v~yy~kge~ii~~~~p~~~l~vi~kG~vev~~~~g~-v~~~~~~gdlFg~~~l 83 (610)
T COG2905 5 PDQFLQQHPPFSQLPAEELEQLMGALEVKYYRKGEIIIYAGSPVHYLYVIRKGVVEVRSDGGE-VLDRLAAGDLFGFSSL 83 (610)
T ss_pred HHHHHhcCCCcccCCHHHHHHHHhhhccccccCCCeeecCCCCcceeEEEEeceeeEEcCCCe-eeeeeccCccccchhh
Confidence 456667776654433333222 22333336667777788999999999999877664 8999999999999999
Q ss_pred ccCC--ceEEEEe
Q psy1512 649 LNMG--TAGTNLI 659 (679)
Q Consensus 649 l~~~--~~t~~a~ 659 (679)
.+.. ...+.|.
T Consensus 84 ~~~~~~~~~~~ae 96 (610)
T COG2905 84 FTELNKQRYMAAE 96 (610)
T ss_pred cccCCCcceeEee
Confidence 9988 4444444
No 58
>KOG3827|consensus
Probab=94.42 E-value=0.14 Score=53.55 Aligned_cols=95 Identities=19% Similarity=0.335 Sum_probs=65.6
Q ss_pred HHHHHHHHHHHHH--HHHHHHHHHhcCCCC-----CCCcccCCCCCchhhhhhHHHHHHHHHHhhccc---CCcCCCCch
Q psy1512 233 SSLIHYLLVIFHW--NGCLYHIIYKNDGFG-----SRNWVYGDSDTTDVVKQYLQSYYWCTLALTTIG---DLPRPRSKG 302 (679)
Q Consensus 233 ~~l~~~~l~~~H~--~aCl~~~i~~~~~~~-----~~~Wi~~~~~~~~~~~~Y~~slywa~~tlttvG---di~~p~t~~ 302 (679)
..+++.+-++++| ||++||+++...++- +.+|... -........|+-|++-|-||+| ..++..=+.
T Consensus 65 ~lliF~~sf~~SWl~Fg~iwwlIA~~hGDL~~~~~~~~~tpC----V~nV~sf~sAFLFSiETQtTIGYG~R~vTeeCP~ 140 (400)
T KOG3827|consen 65 MLLIFSLSFVLSWLFFGVIWWLIAYAHGDLEPDPPGENHTPC----VMNVHSFTSAFLFSIETQTTIGYGFRYVTEECPE 140 (400)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhCCcccCCCCcCCCcc----eeeccchhhhheeeeeeeeeeeccccccCccChH
Confidence 3445555666665 799999998765431 1223221 1123567789999999999998 223455566
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1512 303 EYFFVIVQLLFGLLLFATVLGHVANIVTS 331 (679)
Q Consensus 303 e~i~~i~~~i~G~~~~a~~ig~i~~ii~~ 331 (679)
..+..++-+++|+++-|+++|.+-+-+..
T Consensus 141 aI~ll~~Q~I~g~ii~afm~G~i~aKiar 169 (400)
T KOG3827|consen 141 AIFLLVLQSILGVIINAFMVGAIFAKIAR 169 (400)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 77788888999999999999988765544
No 59
>TIGR00870 trp transient-receptor-potential calcium channel protein. after chronic exposure to capsaicin. (McCleskey and Gold, 1999).
Probab=92.75 E-value=14 Score=43.88 Aligned_cols=25 Identities=12% Similarity=0.251 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Q psy1512 231 RSSSLIHYLLVIFHWNGCLYHIIYK 255 (679)
Q Consensus 231 ~~~~l~~~~l~~~H~~aCl~~~i~~ 255 (679)
.+++++++++++.--+||.++.+..
T Consensus 507 dl~~F~~i~~v~l~aF~~~~~~l~~ 531 (743)
T TIGR00870 507 DILRFLFIYAVVLFGFACGLNQLYQ 531 (743)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4555666666666667777776653
No 60
>KOG2301|consensus
Probab=92.37 E-value=0.88 Score=57.09 Aligned_cols=106 Identities=15% Similarity=0.241 Sum_probs=59.5
Q ss_pred HHHHHHHHHHHHHHHHhhheeEEEECCeEeeCHHHHHHHHhcCCCceehhhhccchHHHHH-hhhhHHHHHHHHHHHHHH
Q psy1512 134 FCLDYMADLMYVIDILIHFRTGYLEDGVLQTDSTKLRDHYMNSTTFYIDCLCLLPLDFLYL-SIGFNSILRLFRLVKIYR 212 (679)
Q Consensus 134 ~~~~~i~d~~f~~Di~l~f~t~y~~~g~~v~d~~~I~~~Ylks~~f~~Dlls~lP~~~~~~-~~~~~~~lrl~rllrl~r 212 (679)
...|++...+|.++++++...- | ..-|.++.|.++|++...-..+... ........+.+|.+|..|
T Consensus 875 ~y~D~~Ft~iFt~Em~lK~ia~----G---------f~~y~rn~w~~lDf~Vv~vslisl~~~~~~~~~ik~lr~lRaLR 941 (1592)
T KOG2301|consen 875 EYADYIFTYIFTFEMLLKWIAY----G---------FFFYFRNAWNWLDFVVVIVSLISLIASLKILSLIKSLRILRALR 941 (1592)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh----H---------HHHHHhhHHhhhhHHHhhhHHHHHHHhhhhhhHHHHHHHHHHHH
Confidence 4689999999999999987421 1 1129999999999976554332222 112233445555555555
Q ss_pred HHHHHHhhhhhc-cchhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1512 213 FWAFMDRTERHT-NYPNLFRSSSLIHYLLVIFHWNGCLYHI 252 (679)
Q Consensus 213 l~~~~~~~~~~~-~~~~~~~~~~l~~~~l~~~H~~aCl~~~ 252 (679)
-++.+++.+... ....++..++-++.++++++.+=+++-.
T Consensus 942 PLR~i~r~~~mr~Vv~~l~~a~~~I~nv~lV~li~~fiFai 982 (1592)
T KOG2301|consen 942 PLRALSRFPGMRVVVLALFGGLPEIFNVLLVCLIFWFIFAI 982 (1592)
T ss_pred HHHHHHHccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555444421 2223344445555555555544444433
No 61
>KOG2302|consensus
Probab=91.34 E-value=23 Score=41.78 Aligned_cols=78 Identities=12% Similarity=0.260 Sum_probs=49.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcccccc--cchhhHHHHHHHHHHHHHHHHHhhhe-eEEEECCeEeeCHHHHHHHHhcC
Q psy1512 100 YWSMIVSLAFLYNFWVIIYRFAFQEINR--ESLVIWFCLDYMADLMYVIDILIHFR-TGYLEDGVLQTDSTKLRDHYMNS 176 (679)
Q Consensus 100 ~W~~i~~~~~~~~~~~ip~~~~F~~~~~--~~~~~~~~~~~i~d~~f~~Di~l~f~-t~y~~~g~~v~d~~~I~~~Ylks 176 (679)
+++.+-+++++++++++-.+---++... +.-.+...+|-++-++|.+++++++. .|.+- ++-|+-.
T Consensus 80 wfe~vsmlvillncvtlgmfrpced~~c~s~rc~ilqafddfifaffavemv~kmvalgifg-----------kkcylgd 148 (1956)
T KOG2302|consen 80 WFECVSMLVILLNCVTLGMFRPCEDMDCLSDRCKILQAFDDFIFAFFAVEMVLKMVALGIFG-----------KKCYLGD 148 (1956)
T ss_pred HHHHHHHHHHHHhhhhhcccccchhcccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcc-----------ccccccC
Confidence 6778888888888887653211122111 11123456888888999999999874 22221 4568877
Q ss_pred CCceehhhhccc
Q psy1512 177 TTFYIDCLCLLP 188 (679)
Q Consensus 177 ~~f~~Dlls~lP 188 (679)
+|.-+|++-.+.
T Consensus 149 twnrldffiv~a 160 (1956)
T KOG2302|consen 149 TWNRLDFFIVMA 160 (1956)
T ss_pred chhhhhhhheeh
Confidence 888888866554
No 62
>KOG4404|consensus
Probab=90.94 E-value=0.063 Score=54.60 Aligned_cols=55 Identities=22% Similarity=0.433 Sum_probs=46.1
Q ss_pred hhhhHHHHHHHHHHhhccc-CCcCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1512 275 VKQYLQSYYWCTLALTTIG-DLPRPRSKGEYFFVIVQLLFGLLLFATVLGHVANIV 329 (679)
Q Consensus 275 ~~~Y~~slywa~~tlttvG-di~~p~t~~e~i~~i~~~i~G~~~~a~~ig~i~~ii 329 (679)
..++.-|+|||.+.+||+| ...+|.|+.+++|+|+..++|+-+.-.++..++.-+
T Consensus 78 qWkF~GaFYFa~TVItTIGyGhstP~T~~GK~Fcm~Yal~Gipl~lvmFqs~gERl 133 (350)
T KOG4404|consen 78 QWKFAGAFYFATTVITTIGYGHSTPSTDGGKAFCMFYALVGIPLTLVMFQSIGERL 133 (350)
T ss_pred ccccCcceEEEEEEEeeeccCCCCCCCcCceehhhhHHHhcCchHHHHHHHHHHHH
Confidence 3467789999999999999 455899999999999999999888777777666444
No 63
>KOG2301|consensus
Probab=90.88 E-value=8.2 Score=48.89 Aligned_cols=103 Identities=14% Similarity=0.186 Sum_probs=58.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcccccccchhhHHHHHHHHHHHHHHHHHhhheeEEEECCeEeeCHHHHHHHHhcCCCce
Q psy1512 101 WSMIVSLAFLYNFWVIIYRFAFQEINRESLVIWFCLDYMADLMYVIDILIHFRTGYLEDGVLQTDSTKLRDHYMNSTTFY 180 (679)
Q Consensus 101 W~~i~~~~~~~~~~~ip~~~~F~~~~~~~~~~~~~~~~i~d~~f~~Di~l~f~t~y~~~g~~v~d~~~I~~~Ylks~~f~ 180 (679)
|+.++.++++++.+.+- +-+.............++.++.++|.++.+++...- -.+.|.+++|..
T Consensus 1159 F~~~i~~li~ln~i~l~--~~~~~qs~~~~~~l~~in~vft~~Ft~E~vLKiiA~-------------~~~~yf~~~WN~ 1223 (1592)
T KOG2301|consen 1159 FDYLIMLLIFLNTIIMM--VETYDQSDTYTAILTILNAVFIVLFTIECILKVIAL-------------RFRGYFTSAWNV 1223 (1592)
T ss_pred HHHHHHHHHHHHHHHHH--HhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-------------hhhHhccccchh
Confidence 44555555555544433 333322222223335688888999999999876321 136788999999
Q ss_pred ehhhhccchHHHHHhh--h-----hHHHHHHHHHHHHHHHHHHHH
Q psy1512 181 IDCLCLLPLDFLYLSI--G-----FNSILRLFRLVKIYRFWAFMD 218 (679)
Q Consensus 181 ~Dlls~lP~~~~~~~~--~-----~~~~lrl~rllrl~rl~~~~~ 218 (679)
+|++.++--..-.... . .....++.|++|+.|+++++.
T Consensus 1224 FDfvvvIlSIv~~~ls~~~~~~~~~~~~~~~~rl~rV~R~l~Li~ 1268 (1592)
T KOG2301|consen 1224 FDFVVTILSIVGIVLSEAVEKYESSPTLLRFLRLFRVGRFLRLIP 1268 (1592)
T ss_pred eEeeeeeHhHHHHHHHHHHHhhccchhhHHHHHHHHHHHHHHhcc
Confidence 9997765432222111 1 112455566666665555544
No 64
>KOG3193|consensus
Probab=86.76 E-value=0.44 Score=51.47 Aligned_cols=29 Identities=24% Similarity=0.528 Sum_probs=21.2
Q ss_pred hHHHHHHHHHHhhccc--CCcCCCCchhHHHH
Q psy1512 278 YLQSYYWCTLALTTIG--DLPRPRSKGEYFFV 307 (679)
Q Consensus 278 Y~~slywa~~tlttvG--di~~p~t~~e~i~~ 307 (679)
...|+||.++|.+||| |. .|.-+...+..
T Consensus 218 lf~s~y~v~vtfstvgygd~-~pd~w~sql~~ 248 (1087)
T KOG3193|consen 218 LFTSFYFVMVTFSTVGYGDW-YPDYWASQLCV 248 (1087)
T ss_pred eeeeEEEEEEEEeecccccc-ccccchhhHHH
Confidence 4568999999999997 77 57555544443
No 65
>KOG3609|consensus
Probab=84.21 E-value=73 Score=37.34 Aligned_cols=101 Identities=8% Similarity=0.209 Sum_probs=46.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH-----HHHhcCCCCCCCcccCCCC--CchhhhhhHHHHHHHHHHhhcccCC--cCCC
Q psy1512 229 LFRSSSLIHYLLVIFHWNGCLYH-----IIYKNDGFGSRNWVYGDSD--TTDVVKQYLQSYYWCTLALTTIGDL--PRPR 299 (679)
Q Consensus 229 ~~~~~~l~~~~l~~~H~~aCl~~-----~i~~~~~~~~~~Wi~~~~~--~~~~~~~Y~~slywa~~tlttvGdi--~~p~ 299 (679)
+..+.|.++++.+++--|+|..+ +....... ..|...... -.+. ..=..+|+||+-+++-+++. ..-.
T Consensus 501 v~Di~kF~~I~~lvl~aF~iGl~qLy~yy~~~~~~~--~~~~~~~~~~~fsti-~eS~~tLFWsiFglv~~~~~~l~~~H 577 (822)
T KOG3609|consen 501 VGDIYKFLFIFVLVLVAFSIGLNQLYDYYLNRKTMK--IDQDYTKTTDSFSTI-GESSKTLFWSIFGLVVLGSVVLPYKH 577 (822)
T ss_pred HHHHHHHHHHHHHHHHHHHhccchHhhhhcchhhcc--ccccccccccccccH-HHHHHHHHHHHHhcccccceecccch
Confidence 34566666666666666666544 33222111 123322111 1122 23346899999887776632 2222
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1512 300 SKGEYFFVIVQLLFGLLLFATVLGHVANIVTSV 332 (679)
Q Consensus 300 t~~e~i~~i~~~i~G~~~~a~~ig~i~~ii~~~ 332 (679)
...|-+..++.-.-.+++...+++.+.+++.+.
T Consensus 578 kf~e~ig~~lfG~Y~vi~vIVLLNmLIAMmnnS 610 (822)
T KOG3609|consen 578 KFTEFIGEVLFGVYNVILIIVLLNLLIAMMSNS 610 (822)
T ss_pred hHHHHHHHHHHHhhheeeHHHHHHHHHHHHHhH
Confidence 333433333333333344444444444444443
No 66
>PF00060 Lig_chan: Ligand-gated ion channel; InterPro: IPR001320 The ability of synapses to modify their synaptic strength in response to activity is a fundamental property of the nervous system and may be an essential component of learning and memory. There are three classes of ionotropic glutamate receptor, namely NMDA (N-methyl-D-aspartate), AMPA (alpha-amino-3-hydroxy-5-methyl-4-isoxazole-4-propionic acid) and kainate receptors. They are believed to play critical roles in synaptic plasticity. At many synapses in the brain, transient activation of NMDA receptors leads to a persistent modification in the strength of synaptic transmission mediated by AMPA receptors and kainate receptors can act as the induction trigger for long-term changes in synaptic transmission [].; GO: 0004970 ionotropic glutamate receptor activity, 0005234 extracellular-glutamate-gated ion channel activity, 0016020 membrane; PDB: 3FAT_A 3KFM_A 3KEI_A 3EN3_A 3EPE_B 3FAS_A 2F34_A 3C34_B 3S2V_A 3GBB_B ....
Probab=84.08 E-value=0.78 Score=42.06 Aligned_cols=74 Identities=19% Similarity=0.292 Sum_probs=51.6
Q ss_pred hhhhhHHHHHHHHHHhhccc-CCcCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy1512 274 VVKQYLQSYYWCTLALTTIG-DLPRPRSKGEYFFVIVQLLFGLLLFATVLGHVANIVTSVSAARKEFQAKLDGVKTYMRM 352 (679)
Q Consensus 274 ~~~~Y~~slywa~~tlttvG-di~~p~t~~e~i~~i~~~i~G~~~~a~~ig~i~~ii~~~~~~~~~~~~~~~~l~~~m~~ 352 (679)
.......++++.+.+++.-| +. .|.+...+++.++..+.++++.+...+++++.+..... +..++.+++..++
T Consensus 41 ~~~~~~~~~~~~~~~~~~q~~~~-~~~s~s~Ril~~~w~l~~lil~~~Yta~L~s~Lt~~~~-----~~~i~sl~dL~~~ 114 (148)
T PF00060_consen 41 WRFSLSNSFWYTFGTLLQQGSSI-RPRSWSGRILLAFWWLFSLILIASYTANLTSFLTVPKY-----EPPIDSLEDLANS 114 (148)
T ss_dssp HHHHHHHHHHHCCCCCHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHH-----TSS-SSHHHHHTH
T ss_pred CcccHHHHHHHHHHhhccccccc-cccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCc-----CCCCCCHHHHHHC
Confidence 44567778888887777655 65 69999999999999999999999999999999877432 3335555555555
Q ss_pred C
Q psy1512 353 R 353 (679)
Q Consensus 353 ~ 353 (679)
.
T Consensus 115 ~ 115 (148)
T PF00060_consen 115 G 115 (148)
T ss_dssp S
T ss_pred C
Confidence 5
No 67
>PF08016 PKD_channel: Polycystin cation channel; InterPro: IPR013122 Polycystic kidney diseases (PKD) are disorders characterised by large numbers of cysts distributed throughout grossly-enlarged kidneys. Cyst development is associated with impairment of kidney function, and ultimately kidney failure and death []. Most cases of autosomal dominant PKD result from mutations in the PKD1 gene that cause premature protein termination. A second gene for autosomal dominant polycystic kidney disease has been identified by positional cloning []. The predicted 968-amino acid sequence of the PKD2 gene product (polycystin-2) contains 6 transmembrane domains, with intracellular N- and C-termini. Polycystin-2 shares some similarity with the family of voltage-activated calcium (and sodium) channels, and contains a potential calcium-binding domain. Polycystin-2 is strongly expressed in ovary, foetal and adult kidney, testis, and small intestine. Polycystin-1 requires the presence of this protein for stable expression and is believed to interact with it via its C terminus. All mutations between exons 1 and 11 result in a truncated polycystin-2 that lacks a calcium-binding EF-hand domain and the cytoplasmic domains required for the interaction of polycystin-2 with polycystin-1 []. PKD2, although clinically milder than PKD1, has a deleterious impact on life expectancy. This entry contains proteins belonging to the polycystin family including Mucolipin and Polycystin-1 and -2 (PKD1 and PKD2). The domain contains the cation channel region of PKD1 and PKD2 proteins. PKD1 and PKD2 may function through a common signalling pathway that is necessary for normal tubulogenesis. The PKD2 gene product has six transmembrane spans with intracellular amino- and carboxyl-termini []. Mucolipin is a cationic channel which probably plays a role in the endocytic pathway and in the control of membrane trafficking of proteins and lipids. It could play a major role in the calcium ion transport regulating lysosomal exocytosis [, , ].
Probab=81.16 E-value=86 Score=34.47 Aligned_cols=22 Identities=23% Similarity=0.477 Sum_probs=11.5
Q ss_pred hhHHHHHHHHHHHHHHHHHhhh
Q psy1512 131 VIWFCLDYMADLMYVIDILIHF 152 (679)
Q Consensus 131 ~~~~~~~~i~d~~f~~Di~l~f 152 (679)
..|..+|.++-++.++=+++.+
T Consensus 242 ~~WN~~e~~ii~ls~~~i~~~~ 263 (425)
T PF08016_consen 242 SFWNWLELLIILLSLAVIVLYF 263 (425)
T ss_pred hcCcHHHHHHHHHHHHHHHHHH
Confidence 4455566665555444444444
No 68
>KOG3614|consensus
Probab=79.35 E-value=62 Score=39.89 Aligned_cols=86 Identities=17% Similarity=0.343 Sum_probs=48.7
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHhhhcccccccchhhHHHHHHHHHHHHHHHHHhhheeEEEECCeEeeCHHHHHHHHh
Q psy1512 95 GRFSYYWSMIVSLAFLYNFWVIIYRFAFQEINRESLVIWFCLDYMADLMYVIDILIHFRTGYLEDGVLQTDSTKLRDHYM 174 (679)
Q Consensus 95 s~~~~~W~~i~~~~~~~~~~~ip~~~~F~~~~~~~~~~~~~~~~i~d~~f~~Di~l~f~t~y~~~g~~v~d~~~I~~~Yl 174 (679)
.|+..+|-.++..+.++.++...+.+-|...+ ....|..+-++ +.++++.+ |-.++.++..+ +++++. |+
T Consensus 790 APIvkFw~~~l~yi~FL~lftYvlLv~~~~~P--s~~Ew~~~~~i--ftl~~E~v---Rq~~~se~~~l--~~kv~v-~f 859 (1381)
T KOG3614|consen 790 APIVKFWLNVLSYIAFLLLFTYVLLVDFQPSP--SMWEWILFAWI--FTLFLEEV---RQIFISESGLL--PQKVRV-YF 859 (1381)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHheeccCCCC--CccchhHHHHH--HHHHHHHH---HHHhcCCCcch--hhHHHH-HH
Confidence 67788888888888777777766666665332 33334332222 23344444 33333332222 234444 44
Q ss_pred cCCCceehhhhccchH
Q psy1512 175 NSTTFYIDCLCLLPLD 190 (679)
Q Consensus 175 ks~~f~~Dlls~lP~~ 190 (679)
...|+.+|+++++-|.
T Consensus 860 ~d~wN~~d~~ai~~F~ 875 (1381)
T KOG3614|consen 860 ADFWNLIDLLAILLFL 875 (1381)
T ss_pred HHHHHHHHHHHHHHHh
Confidence 4479999999987654
No 69
>PF05899 Cupin_3: Protein of unknown function (DUF861); InterPro: IPR008579 The function of the proteins in this entry are unknown. They contain the conserved barrel domain of the 'cupin' superfamily and members are specific to plants and bacteria.; PDB: 1RC6_A 3MYX_A 1O5U_A 2K9Z_A 1LKN_A 3ES4_A 1SFN_B 3BCW_A.
Probab=77.43 E-value=4.4 Score=32.56 Aligned_cols=30 Identities=30% Similarity=0.650 Sum_probs=24.9
Q ss_pred CceEEEEEeeEEEEEecCCceEeEEcCCCCee
Q psy1512 612 GKEMYIVNRGRLQVVADNGKTVLATLRAGSYF 643 (679)
Q Consensus 612 g~~~yiI~~G~v~v~~~~~~~~i~~L~~G~~F 643 (679)
.+++..|++|+|.++..++.. .++++||.|
T Consensus 25 ~~E~~~vleG~v~it~~~G~~--~~~~aGD~~ 54 (74)
T PF05899_consen 25 EDEFFYVLEGEVTITDEDGET--VTFKAGDAF 54 (74)
T ss_dssp SEEEEEEEEEEEEEEETTTEE--EEEETTEEE
T ss_pred CCEEEEEEEeEEEEEECCCCE--EEEcCCcEE
Confidence 378889999999999976654 689999965
No 70
>KOG1418|consensus
Probab=76.98 E-value=0.79 Score=50.13 Aligned_cols=47 Identities=36% Similarity=0.541 Sum_probs=39.4
Q ss_pred hhhHHHHHHHHHHhhccc--CCcCCCCchhH--------HHHHHHHHHHHHHHHHHHH
Q psy1512 276 KQYLQSYYWCTLALTTIG--DLPRPRSKGEY--------FFVIVQLLFGLLLFATVLG 323 (679)
Q Consensus 276 ~~Y~~slywa~~tlttvG--di~~p~t~~e~--------i~~i~~~i~G~~~~a~~ig 323 (679)
..|+.|+||+++++||+| |+ .|.+...+ ....+..++|...++.+..
T Consensus 241 w~f~~~~Yf~fisltTIG~GD~-vp~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 297 (433)
T KOG1418|consen 241 WSFIEAFYFSFISLTTIGFGDI-VPRTLLGRFRREELVDPLASVWILSGLALLALVLL 297 (433)
T ss_pred eeeEeeeeEEEEEeeeecCCcc-ccCCCcceeeccccccchhHHHHHhhhhHHHHHhh
Confidence 468889999999999997 99 59888766 6788888888888887773
No 71
>PF08006 DUF1700: Protein of unknown function (DUF1700); InterPro: IPR012963 This family contains many hypothetical bacterial proteins and two putative membrane proteins (Q6GFD0 from SWISSPROT and Q6G806 from SWISSPROT).
Probab=73.32 E-value=14 Score=35.27 Aligned_cols=45 Identities=13% Similarity=0.448 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhh--cccCchhHHhhcC
Q psy1512 340 QAKLDGVKTYMRMRRVPNALQVKVIKWFDYLWLT--QKCSDEEKAVSCL 386 (679)
Q Consensus 340 ~~~~~~l~~~m~~~~lp~~l~~rv~~y~~~~w~~--~~~~~~~~~l~~l 386 (679)
++-+++++++++ ++|++-++++.+||+-+.+. .+|.+|+++.++|
T Consensus 4 ~efL~~L~~~L~--~lp~~e~~e~l~~Y~e~f~d~~~~G~sEeeii~~L 50 (181)
T PF08006_consen 4 NEFLNELEKYLK--KLPEEEREEILEYYEEYFDDAGEEGKSEEEIIAEL 50 (181)
T ss_pred HHHHHHHHHHHH--cCCHHHHHHHHHHHHHHHHHhhhCCCCHHHHHHHc
Confidence 355677888886 59999999999999987765 4567899999988
No 72
>KOG3542|consensus
Probab=72.74 E-value=0.89 Score=50.51 Aligned_cols=121 Identities=15% Similarity=0.194 Sum_probs=76.1
Q ss_pred cchHHHHHHHhhhhhhccccccccCChhHHHHHHHhccceEe-CCCCEEEEeCCeeeeEEEEeeeeEEEEEehhhHHHHH
Q psy1512 438 DKLKAEIAINVHLDTLKRVEIFQNTEAGFLCELVLRLRPVLF-SPGDYICRKGNRRTASVRSVGYSDLFVLSKTDMWDVL 516 (679)
Q Consensus 438 ~~Lr~ei~~~~~~~~l~~i~lF~~~~~~~l~~L~~~l~~~~~-~pge~I~~~Gd~r~asv~a~~~~~ly~I~~g~~~~vl 516 (679)
|.-|.+--++...+++++.|-|.+++-...++|+..|...+. .+|.+|...|+. -+.-++|..|.+
T Consensus 268 P~drtddDieqLLeFMhqlpAFAnmtMSvrReLC~vMvFaVVe~AGtivL~dgee---------LDSWsVIlNG~V---- 334 (1283)
T KOG3542|consen 268 PSDRTDDDIEQLLEFMHQLPAFANMTMSVRRELCLVMVFAVVEDAGTIVLADGEE---------LDSWSVILNGCV---- 334 (1283)
T ss_pred CcccchHHHHHHHHHHHhchHhhcccHHHHHHHHHHHHHHHHhhcCeEEecCCcc---------cceeEEEecceE----
Confidence 334555556677899999999999999999999999887544 578888999987 566777744433
Q ss_pred hhChhHHHHHHHHHHHHHhhhccCcccCCCCC----CCCCCCCcccccccccccceeecccchhHHHhhcChh
Q psy1512 517 KEYPAARVRLESIAVKRLQKYKRTPLEKGISP----SPFPGNRRTASVRSVGYSDLFVLSKTDMWDVLKEYPA 585 (679)
Q Consensus 517 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~g~~~----~~~~~~~r~atv~A~~~~~l~~L~r~~f~~il~~~P~ 585 (679)
+++..+.......-+..+|... ..+-|..| .-+.+|+..+|..+||..++..--.
T Consensus 335 ----------Ev~~PdGk~e~l~mGnSFG~~PT~dkqym~G~mR----TkVDDCqFVciaqqDycrIln~vek 393 (1283)
T KOG3542|consen 335 ----------EVVKPDGKREELKMGNSFGAEPTPDKQYMIGEMR----TKVDDCQFVCIAQQDYCRILNTVEK 393 (1283)
T ss_pred ----------EEecCCCceEEeecccccCCCCCcchhhhhhhhh----eecccceEEEeehhhHHHHHHHHHh
Confidence 2222111011111111222210 01112222 2368999999999999999876433
No 73
>COG4709 Predicted membrane protein [Function unknown]
Probab=71.03 E-value=18 Score=34.40 Aligned_cols=44 Identities=14% Similarity=0.259 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhh--cccCchhHHhhcC
Q psy1512 341 AKLDGVKTYMRMRRVPNALQVKVIKWFDYLWLT--QKCSDEEKAVSCL 386 (679)
Q Consensus 341 ~~~~~l~~~m~~~~lp~~l~~rv~~y~~~~w~~--~~~~~~~~~l~~l 386 (679)
+-++++++|+ .++|++.++.+..||+-++.. ..|.+|+|+..+|
T Consensus 5 efL~eL~~yL--~~Lp~~~r~e~m~dyeehF~~a~~~GksE~EI~~~L 50 (195)
T COG4709 5 EFLNELEQYL--EGLPREERREIMYDYEEHFREAQEAGKSEEEIAKDL 50 (195)
T ss_pred HHHHHHHHHH--HhCCHHHHHHHHHHHHHHHHhhhhcCCCHHHHHHHh
Confidence 4566778887 479999999999999877765 3567899999998
No 74
>PF04831 Popeye: Popeye protein conserved region; InterPro: IPR006916 The Popeye (POP) family of proteins, is restricted to vertebrates and is preferentially expressed in developing and adult striated muscle. It is represented by a conserved region which includes three potential transmembrane domains []. The strong conservation of POP genes during evolution and their preferential expression in heart and skeletal muscle suggest that these novel proteins may have an important function in these tissues in vertebrates.; GO: 0016020 membrane
Probab=70.65 E-value=17 Score=33.36 Aligned_cols=115 Identities=9% Similarity=0.051 Sum_probs=68.7
Q ss_pred CChhHHHHHHHh-ccceEeCCCCEEEEeCCeeeeEEEEeeeeEEEEEehhhHHHHHhhChhHHHHHHHHHHHHHhhhccC
Q psy1512 462 TEAGFLCELVLR-LRPVLFSPGDYICRKGNRRTASVRSVGYSDLFVLSKTDMWDVLKEYPAARVRLESIAVKRLQKYKRT 540 (679)
Q Consensus 462 ~~~~~l~~L~~~-l~~~~~~pge~I~~~Gd~r~asv~a~~~~~ly~I~~g~~~~vl~~~p~~~~~~~~~~~~~~~~~~~~ 540 (679)
.+...-++|+.. .+.....+|+.---||.-+......+=.+.+-+..+|.+...+.++ .
T Consensus 15 Vs~~~Fk~iv~~~~~i~~L~~~~~YAvE~~T~~drLSlLLsGr~~Vs~~g~fLH~I~p~--------------------q 74 (153)
T PF04831_consen 15 VSRQQFKKIVGCCCEIRTLKKGETYAVEGKTPIDRLSLLLSGRMRVSCDGRFLHYIYPY--------------------Q 74 (153)
T ss_pred CCHHHHHHHHhhhceEEEecCCceeeecCCcccceEeEEEcCcEEEEECCEeeEeeccc--------------------c
Confidence 567777788877 4556788999988888754222211111222222222222111100 0
Q ss_pred cccCCCCCCC--CCCCCcccccccccccceeecccchhHHHhhcChhHhhhhHHHHHH
Q psy1512 541 PLEKGISPSP--FPGNRRTASVRSVGYSDLFVLSKTDMWDVLKEYPAARVRLESIAVK 596 (679)
Q Consensus 541 ~~~~g~~~~~--~~~~~r~atv~A~~~~~l~~L~r~~f~~il~~~P~~~~~l~~~~~~ 596 (679)
+...-++.+. -.+.....|+.|.+.|..+.++|+.+..++...|-.+..+...+.+
T Consensus 75 FlDSPEW~s~~~s~~~~FQVTitA~~~Cryl~W~R~kL~~~l~~~~~L~~vF~~liGk 132 (153)
T PF04831_consen 75 FLDSPEWESLRPSEDDKFQVTITAEEDCRYLCWPREKLYLLLAKDPFLAAVFSNLIGK 132 (153)
T ss_pred cccChhhhccccCCCCeEEEEEEEcCCcEEEEEEHHHHHHHHhhCHHHHHHHHHHHHH
Confidence 1111111111 2344567899999999999999999999999999888776665443
No 75
>PRK11832 putative DNA-binding transcriptional regulator; Provisional
Probab=63.38 E-value=3.1 Score=40.60 Aligned_cols=34 Identities=12% Similarity=0.047 Sum_probs=28.8
Q ss_pred CcccccccccccceeecccchhHHHhhcChhHhh
Q psy1512 555 RRTASVRSVGYSDLFVLSKTDMWDVLKEYPAARV 588 (679)
Q Consensus 555 ~r~atv~A~~~~~l~~L~r~~f~~il~~~P~~~~ 588 (679)
......+|.++|+.+.+++++|.+++.++....+
T Consensus 81 ~~~~~l~ae~~c~~~~i~~~~~~~iie~~~LW~~ 114 (207)
T PRK11832 81 DIPYKLISEGNCTGYHLPAKQTITLIEQNQLWRD 114 (207)
T ss_pred CceEEEEEcCccEEEEeeHHHHHHHHHHhchHHH
Confidence 3457899999999999999999999998865444
No 76
>KOG1053|consensus
Probab=58.35 E-value=1.2e+02 Score=35.98 Aligned_cols=47 Identities=15% Similarity=0.415 Sum_probs=35.8
Q ss_pred HHHHHHhhcccCCcCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1512 283 YWCTLALTTIGDLPRPRSKGEYFFVIVQLLFGLLLFATVLGHVANIVT 330 (679)
Q Consensus 283 ywa~~tlttvGdi~~p~t~~e~i~~i~~~i~G~~~~a~~ig~i~~ii~ 330 (679)
-||++-=.+|- +..|..+..++...++.++++++.|.-.+|+++.+.
T Consensus 617 lwaLvFnnsVp-v~nPKgtTskiMv~VWAfFavifLAsYTANLAAfMI 663 (1258)
T KOG1053|consen 617 LWALVFNNSVP-VENPKGTTSKIMVLVWAFFAVIFLASYTANLAAFMI 663 (1258)
T ss_pred HHHHHhCCCcC-CCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 47765322332 225888999999999999999999999999887653
No 77
>PF13314 DUF4083: Domain of unknown function (DUF4083)
Probab=57.17 E-value=39 Score=25.49 Aligned_cols=48 Identities=17% Similarity=0.324 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHH
Q psy1512 304 YFFVIVQLLFGLLLFATVLGHVANIVTSVSAARK---EFQAKLDGVKTYMR 351 (679)
Q Consensus 304 ~i~~i~~~i~G~~~~a~~ig~i~~ii~~~~~~~~---~~~~~~~~l~~~m~ 351 (679)
.++.+.+.++-+++++.+.+.+-.++.+.+.+++ +.++|++++-+.+.
T Consensus 6 ~Iy~~~Vi~l~vl~~~~Ftl~IRri~~~s~~kkq~~~~~eqKLDrIIeLLE 56 (58)
T PF13314_consen 6 LIYYILVIILIVLFGASFTLFIRRILINSNAKKQDVDSMEQKLDRIIELLE 56 (58)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHHc
Confidence 3455544444344444444445555555333332 57888888877654
No 78
>PF00520 Ion_trans: Ion transport protein calcium channel signature potassium channel signature sodium channel signature; InterPro: IPR005821 This group of proteins is found in sodium, potassium, and calcium ion channels proteins. The proteins have 6 transmembrane helices in which the last two helices flank a loop which determines ion selectivity. In some Na channels proteins the domain is repeated four times, whereas in others (e.g. K channels) the protein forms a tetramer in the membrane. A bacterial structure of the protein is known for the last two helices but is not included in the Pfam family due to it lacking the first four helices. ; GO: 0005216 ion channel activity, 0006811 ion transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3VMX_B 1QG9_A 1UJL_A 2LE7_A 2LCM_A 3A2A_A 3RW0_A 4EKW_A 3RVY_B 3RVZ_B ....
Probab=56.97 E-value=90 Score=29.28 Aligned_cols=91 Identities=18% Similarity=0.344 Sum_probs=54.1
Q ss_pred hhHHHHHHHHHHHHHHHHHhhheeEEEECCeEeeCHHHHHHHHhcCCCceehhhhccchHHHHHhhhhHHHHHHHHHHHH
Q psy1512 131 VIWFCLDYMADLMYVIDILIHFRTGYLEDGVLQTDSTKLRDHYMNSTTFYIDCLCLLPLDFLYLSIGFNSILRLFRLVKI 210 (679)
Q Consensus 131 ~~~~~~~~i~d~~f~~Di~l~f~t~y~~~g~~v~d~~~I~~~Ylks~~f~~Dlls~lP~~~~~~~~~~~~~lrl~rllrl 210 (679)
..|..+|.+..+...++........ ..+ + ......+++|++|++|+
T Consensus 31 ~~~~~~d~~~~~~~~~~~~~~~~~~--------------~~~---------------~-----~~~~~~~~l~~~R~l~~ 76 (200)
T PF00520_consen 31 SWWNWFDFISVIPSIVSVILRSYGS--------------ASA---------------Q-----SLLRIFRLLRLLRLLRL 76 (200)
T ss_dssp SHHHHHHHHHHHHHCCHHCCHCSS----------------HH---------------C-----HCHHHHHHHHHHHHHHH
T ss_pred Chhhccccccccccccccccccccc--------------ccc---------------c-----ceEEEEEeecccccccc
Confidence 4566788888777777777655322 000 0 11223345555555555
Q ss_pred HHHHHHHHhh--hhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy1512 211 YRFWAFMDRT--ERHTNYPNLFRSSSLIHYLLVIFHWNGCLYHIIYK 255 (679)
Q Consensus 211 ~rl~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~H~~aCl~~~i~~ 255 (679)
.|..+.++.. .-....+.+.+.+.++..+++..++.+|..+.-..
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~a~~~~~lf~~~~ 123 (200)
T PF00520_consen 77 LRRFRSLRRLLRALIRSFPDLFKFILLLFIVLLFFACIGYQLFGGSD 123 (200)
T ss_dssp HHTTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTS
T ss_pred ccccccccccccccccccccccccccccccccccccchhheeccccc
Confidence 5554432222 11244456778888888999999999998887654
No 79
>PF10047 DUF2281: Protein of unknown function (DUF2281); InterPro: IPR018739 This domain is found in putative uncharacterised proteins, though some proteins contaning this domain are described as a transcritional regulator of the Xre family.
Probab=52.81 E-value=17 Score=28.47 Aligned_cols=23 Identities=22% Similarity=0.601 Sum_probs=20.5
Q ss_pred hCCCCHHHHHHHHHHHHHHhhhc
Q psy1512 352 MRRVPNALQVKVIKWFDYLWLTQ 374 (679)
Q Consensus 352 ~~~lp~~l~~rv~~y~~~~w~~~ 374 (679)
-+++|+++++.|.+|.+|++.++
T Consensus 9 i~~LP~~~~~Evldfi~fL~~k~ 31 (66)
T PF10047_consen 9 IQQLPEELQQEVLDFIEFLLQKY 31 (66)
T ss_pred HHHCCHHHHHHHHHHHHHHHHhc
Confidence 35799999999999999998766
No 80
>KOG3599|consensus
Probab=41.16 E-value=7.1e+02 Score=29.91 Aligned_cols=22 Identities=23% Similarity=0.392 Sum_probs=15.3
Q ss_pred hhHHHHHHHHHHHHHHHHHhhh
Q psy1512 131 VIWFCLDYMADLMYVIDILIHF 152 (679)
Q Consensus 131 ~~~~~~~~i~d~~f~~Di~l~f 152 (679)
..|..+|+++.++.++=++++.
T Consensus 498 s~wN~ld~~i~~ls~~~~~~~~ 519 (798)
T KOG3599|consen 498 SKWNWLDLAIVLLSVVLLVLMI 519 (798)
T ss_pred hhHHHHHHHHHHHHHHHHHHHH
Confidence 4566778877777777666654
No 81
>KOG1054|consensus
Probab=36.71 E-value=41 Score=37.62 Aligned_cols=53 Identities=23% Similarity=0.342 Sum_probs=46.2
Q ss_pred hHHHHHHHHHHhhccc-CCcCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1512 278 YLQSYYWCTLALTTIG-DLPRPRSKGEYFFVIVQLLFGLLLFATVLGHVANIVTS 331 (679)
Q Consensus 278 Y~~slywa~~tlttvG-di~~p~t~~e~i~~i~~~i~G~~~~a~~ig~i~~ii~~ 331 (679)
...|+||++....--| || .|.+..++|.+.++-++.+++.+--.+++++.++-
T Consensus 596 ifNsLWFsLgAFMQQG~DI-~PRslSGRIvggvWWFFTlIIiSSYTANLAAFLTv 649 (897)
T KOG1054|consen 596 IFNSLWFSLGAFMQQGCDI-SPRSLSGRIVGGVWWFFTLIIISSYTANLAAFLTV 649 (897)
T ss_pred hhHHHHHHHHHHHhcCCCC-CccccccceeccchhhhhhhhhhhhhhHHHHHHhH
Confidence 4479999999888889 99 79999999999999999999888888888887653
No 82
>PLN02868 acyl-CoA thioesterase family protein
Probab=35.37 E-value=52 Score=36.03 Aligned_cols=38 Identities=16% Similarity=0.061 Sum_probs=31.8
Q ss_pred CCCCCcccccccccccceeecccchhHHHhhcChhHhh
Q psy1512 551 FPGNRRTASVRSVGYSDLFVLSKTDMWDVLKEYPAARV 588 (679)
Q Consensus 551 ~~~~~r~atv~A~~~~~l~~L~r~~f~~il~~~P~~~~ 588 (679)
+.+.++.++++|.++|+++.|++++|..+...++-..+
T Consensus 86 l~~~~~~~~~~A~~d~~v~~ip~~~~~~~~~~~~~~~~ 123 (413)
T PLN02868 86 LSGSVHSADVVAVSELTCLVLPHEHCHLLSPKSIWDSD 123 (413)
T ss_pred hCCCCcccEEEECCCEEEEEEcHHHHhhhccccccccc
Confidence 46788999999999999999999999888766654433
No 83
>PRK12468 flhB flagellar biosynthesis protein FlhB; Reviewed
Probab=35.17 E-value=4.9e+02 Score=28.21 Aligned_cols=61 Identities=2% Similarity=0.019 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q psy1512 306 FVIVQLLFGLLLFATVLGHVANIVTSVSAARKEFQAKLDGVKTYMRMRRVPNALQVKVIKW 366 (679)
Q Consensus 306 ~~i~~~i~G~~~~a~~ig~i~~ii~~~~~~~~~~~~~~~~l~~~m~~~~lp~~l~~rv~~y 366 (679)
..++..++..++.++++-.+...+-+...-.++.+-..+++++=+|+..=+|+++.|+|+-
T Consensus 187 ~~~~~~l~~~~~~~~~via~~D~~~qr~~~~k~lkMSkqEvKdE~K~~EGdP~iK~r~Rq~ 247 (386)
T PRK12468 187 LHLIIFCGLVVVLGLSPMVGFDVFYQITSHIKKLRMTKQDIRDEFKNQEGDPHVKGRIRQQ 247 (386)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHhccCCHHHHHHHHHH
Confidence 3333333334444444434444443333333444444578999999999999999999863
No 84
>PF08285 DPM3: Dolichol-phosphate mannosyltransferase subunit 3 (DPM3); InterPro: IPR013174 This family corresponds to subunit 3 of dolichol-phosphate mannosyltransferase, an enzyme which generates mannosyl donors for glycosylphosphatidylinositols, N-glycan and protein O- and C-mannosylation. DPM3 is an integral membrane protein and plays a role in stabilising the dolichol-phosphate mannosyl transferase complex [].
Probab=34.62 E-value=2.8e+02 Score=23.31 Aligned_cols=37 Identities=22% Similarity=0.197 Sum_probs=25.0
Q ss_pred HHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHhCCCC
Q psy1512 320 TVLGHVANI---VTSVSAARKEFQAKLDGVKTYMRMRRVP 356 (679)
Q Consensus 320 ~~ig~i~~i---i~~~~~~~~~~~~~~~~l~~~m~~~~lp 356 (679)
|..+.++-- +.+-....++.++.+++.++.++++++.
T Consensus 51 Ysl~~lgy~v~tFnDcpeA~~eL~~eI~eAK~dLr~kGv~ 90 (91)
T PF08285_consen 51 YSLFTLGYGVATFNDCPEAAKELQKEIKEAKADLRKKGVD 90 (91)
T ss_pred HHHHHHHHhhhccCCCHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 444444433 3444566677888888999999998874
No 85
>PRK09108 type III secretion system protein HrcU; Validated
Probab=34.53 E-value=5.2e+02 Score=27.67 Aligned_cols=67 Identities=9% Similarity=-0.001 Sum_probs=42.9
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q psy1512 300 SKGEYFFVIVQLLFGLLLFATVLGHVANIVTSVSAARKEFQAKLDGVKTYMRMRRVPNALQVKVIKW 366 (679)
Q Consensus 300 t~~e~i~~i~~~i~G~~~~a~~ig~i~~ii~~~~~~~~~~~~~~~~l~~~m~~~~lp~~l~~rv~~y 366 (679)
.....+..++..++..+..++++-.+....-+...-.++.+=.-.++++=+|+..=+|+++.|+|+-
T Consensus 176 ~~~~~~~~~~~~l~~~~~~~~~via~~D~~~qr~~~~k~lkMSkqEvK~E~K~~EGdP~iK~rrRq~ 242 (353)
T PRK09108 176 DLAQILWTVLMKLLAVAAGVFLLVGAADWKIQRWLFIRDNRMSKDEVKREHKESEGDPHIKGERKRL 242 (353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHhccCCHHHHHHHHHH
Confidence 3344455555555555555555555555554444444444444578999999999999999999863
No 86
>COG3837 Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown]
Probab=32.25 E-value=62 Score=29.93 Aligned_cols=36 Identities=22% Similarity=0.263 Sum_probs=28.2
Q ss_pred CCCceEEEEEeeEEEEEecCCceEeEEcCCCCeeeeecc
Q psy1512 610 EVGKEMYIVNRGRLQVVADNGKTVLATLRAGSYFGEISI 648 (679)
Q Consensus 610 e~g~~~yiI~~G~v~v~~~~~~~~i~~L~~G~~FGE~al 648 (679)
...++|+.|++|+..+.-++++ -.|++||.-|=-|=
T Consensus 62 s~edEfv~ILeGE~~l~~d~~e---~~lrpGD~~gFpAG 97 (161)
T COG3837 62 SAEDEFVYILEGEGTLREDGGE---TRLRPGDSAGFPAG 97 (161)
T ss_pred ccCceEEEEEcCceEEEECCee---EEecCCceeeccCC
Confidence 3578999999999999876553 46899998775553
No 87
>PF02037 SAP: SAP domain; InterPro: IPR003034 The SAP (after SAF-A/B, Acinus and PIAS) motif is a putative DNA binding domain found in diverse nuclear proteins involved in chromosomal organisation [], including in apoptosis []. In yeast, SAP is found in the most distal N-terminal region of E3 SUMO-protein ligase SIZ1, where it is involved in nuclear localization [].; GO: 0003676 nucleic acid binding; PDB: 2RNN_A 1JEQ_A 2KW9_A 2KVU_A 2DO1_A 1ZBU_B 1ZBH_A 2DO5_A 2RNO_A 1H1J_S ....
Probab=31.95 E-value=1e+02 Score=20.65 Aligned_cols=26 Identities=12% Similarity=0.221 Sum_probs=20.0
Q ss_pred HHHHHHHHHHhCCCC-----HHHHHHHHHHH
Q psy1512 342 KLDGVKTYMRMRRVP-----NALQVKVIKWF 367 (679)
Q Consensus 342 ~~~~l~~~m~~~~lp-----~~l~~rv~~y~ 367 (679)
++.+++++++.+++| .+|..|+.+|+
T Consensus 5 ~v~eLk~~l~~~gL~~~G~K~~Li~Rl~~~l 35 (35)
T PF02037_consen 5 TVAELKEELKERGLSTSGKKAELIERLKEHL 35 (35)
T ss_dssp HHHHHHHHHHHTTS-STSSHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHCCCCCCCCHHHHHHHHHHhC
Confidence 457899999999998 46888888774
No 88
>PRK12721 secretion system apparatus protein SsaU; Reviewed
Probab=31.62 E-value=6.2e+02 Score=27.06 Aligned_cols=65 Identities=14% Similarity=0.053 Sum_probs=40.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q psy1512 302 GEYFFVIVQLLFGLLLFATVLGHVANIVTSVSAARKEFQAKLDGVKTYMRMRRVPNALQVKVIKW 366 (679)
Q Consensus 302 ~e~i~~i~~~i~G~~~~a~~ig~i~~ii~~~~~~~~~~~~~~~~l~~~m~~~~lp~~l~~rv~~y 366 (679)
...+...+..+++.++.++++-.+....-+...-.++.+-..+++++=+|+..=+|+++.|+++-
T Consensus 176 ~~~~~~~~~~l~~~~~~~~~via~~D~~~qr~~~~k~lkMskqEvKdE~Ke~EGdP~iK~rrR~~ 240 (349)
T PRK12721 176 LPVVSTLIFWLWGGLLACYLVFGILDYSFQRYKIMKQLKMSKDDVKQEYKDSEGDPEIKQKRREL 240 (349)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHhccCCHHHHHHHHHH
Confidence 34444555555555555554444444444444444444444578999999999999999999864
No 89
>KOG3676|consensus
Probab=31.49 E-value=9.4e+02 Score=28.49 Aligned_cols=61 Identities=23% Similarity=0.395 Sum_probs=43.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhCCCCHHHHHHHH
Q psy1512 303 EYFFVIVQLLFGLLLFATVLGHVANIVTSVSAAR-KEFQAKLDGVKTYMRMRRVPNALQVKVI 364 (679)
Q Consensus 303 e~i~~i~~~i~G~~~~a~~ig~i~~ii~~~~~~~-~~~~~~~~~l~~~m~~~~lp~~l~~rv~ 364 (679)
-.+|.+++.++.++++-.+|+.+++-.......+ ++++.+...+ -.|-.+.+|+.++.+-+
T Consensus 621 kilfv~y~ilv~ILllNMLIAMMg~Ty~~Va~~s~~~Wk~Q~A~~-iL~lErs~p~~~r~~~~ 682 (782)
T KOG3676|consen 621 KILFVAYMILVTILLLNMLIAMMGNTYETVAQESEKEWKLQWAAT-ILMLERSLPPALRKRFR 682 (782)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhHHHHHHHHHHHH-HHHHHhcCCHHHHHHHh
Confidence 3456666777777888888888888887777666 6666554443 45678899999988743
No 90
>PF10011 DUF2254: Predicted membrane protein (DUF2254); InterPro: IPR018723 Members of this family of proteins comprises various hypothetical and putative membrane proteins. Their exact function, has not, as yet, been defined.
Probab=30.61 E-value=2.5e+02 Score=30.23 Aligned_cols=62 Identities=13% Similarity=0.284 Sum_probs=42.8
Q ss_pred hhhhhHHHHHHHHHHhhcccCCcC-CCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1512 274 VVKQYLQSYYWCTLALTTIGDLPR-PRSKGEYFFVIVQLLFGLLLFATVLGHVANIVTSVSAA 335 (679)
Q Consensus 274 ~~~~Y~~slywa~~tlttvGdi~~-p~t~~e~i~~i~~~i~G~~~~a~~ig~i~~ii~~~~~~ 335 (679)
..-.|+-++-|++..+.++++... ..-..-..+++++.+++++.+.+.|.+++..++-.+--
T Consensus 97 vLg~Figtfvy~l~~l~~i~~~~~~~~p~~~~~~a~~l~i~~v~~li~fI~~i~~~iqv~~ii 159 (371)
T PF10011_consen 97 VLGTFIGTFVYSLLVLIAIRSGDYGSVPRLSVFIALALAILSVVLLIYFIHHIARSIQVSNII 159 (371)
T ss_pred HHHHHHHHHHHHHHHHHHccccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHH
Confidence 345678888888888888862211 12223377777888888889999999888877654443
No 91
>COG5559 Uncharacterized conserved small protein [Function unknown]
Probab=30.37 E-value=68 Score=24.23 Aligned_cols=23 Identities=17% Similarity=0.577 Sum_probs=19.9
Q ss_pred HhCCCCHHHHHHHHHHHHHHhhh
Q psy1512 351 RMRRVPNALQVKVIKWFDYLWLT 373 (679)
Q Consensus 351 ~~~~lp~~l~~rv~~y~~~~w~~ 373 (679)
-..++|++|++.|.+|.+|+...
T Consensus 7 lfqkLPDdLKrEvldY~EfLlek 29 (65)
T COG5559 7 LFQKLPDDLKREVLDYIEFLLEK 29 (65)
T ss_pred HHHHCcHHHHHHHHHHHHHHHHH
Confidence 34689999999999999999754
No 92
>KOG4440|consensus
Probab=30.13 E-value=1.5e+02 Score=33.69 Aligned_cols=90 Identities=14% Similarity=0.214 Sum_probs=62.0
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCCCCcccC-CCCCchhhhhhHHHHHHHHHHhh--cccCCcCCCCchhHHHHHHHHHHH
Q psy1512 238 YLLVIFHWNGCLYHIIYKNDGFGSRNWVYG-DSDTTDVVKQYLQSYYWCTLALT--TIGDLPRPRSKGEYFFVIVQLLFG 314 (679)
Q Consensus 238 ~~l~~~H~~aCl~~~i~~~~~~~~~~Wi~~-~~~~~~~~~~Y~~slywa~~tlt--tvGdi~~p~t~~e~i~~i~~~i~G 314 (679)
.+.+-+|.+|-..|.+.....++. +-.. ...+++-.-..-.|+||+-..+. ++|.- +|.+-.-+++.+++.-+.
T Consensus 575 lv~~SVhvVal~lYlLDrfSPFgR--Fk~~ds~~~ee~alnlssAmWF~WGVLLNSGigEg-tPRSfSARvLGmVWaGFa 651 (993)
T KOG4440|consen 575 LVGLSVHVVALMLYLLDRFSPFGR--FKVNDSEEEEEDALNLSSAMWFSWGVLLNSGIGEG-TPRSFSARVLGMVWAGFA 651 (993)
T ss_pred HHHHHHHHHHHHHHHHHhcCcccc--eeeccCccchhhhcchhhhHHHHhHhhhccccCCC-CCcchhHHHHHHHHhhhh
Confidence 345678999999998877655432 1111 11222333455567886655554 45566 799999999999999999
Q ss_pred HHHHHHHHHHHHHHHH
Q psy1512 315 LLLFATVLGHVANIVT 330 (679)
Q Consensus 315 ~~~~a~~ig~i~~ii~ 330 (679)
+++.|--.+++++.+.
T Consensus 652 MIiVASYTANLAAFLV 667 (993)
T KOG4440|consen 652 MIIVASYTANLAAFLV 667 (993)
T ss_pred eeeehhhhhhhhhhee
Confidence 9999988888887763
No 93
>COG3450 Predicted enzyme of the cupin superfamily [General function prediction only]
Probab=29.82 E-value=99 Score=27.26 Aligned_cols=29 Identities=34% Similarity=0.618 Sum_probs=23.8
Q ss_pred ceEEEEEeeEEEEEecCCceEeEEcCCCCee
Q psy1512 613 KEMYIVNRGRLQVVADNGKTVLATLRAGSYF 643 (679)
Q Consensus 613 ~~~yiI~~G~v~v~~~~~~~~i~~L~~G~~F 643 (679)
+++.=|++|+++++.++|+ -.++++||-|
T Consensus 64 ~E~chil~G~v~~T~d~Ge--~v~~~aGD~~ 92 (116)
T COG3450 64 DEFCHILEGRVEVTPDGGE--PVEVRAGDSF 92 (116)
T ss_pred ceEEEEEeeEEEEECCCCe--EEEEcCCCEE
Confidence 7888899999999987664 4579999954
No 94
>PRK08156 type III secretion system protein SpaS; Validated
Probab=29.37 E-value=7.3e+02 Score=26.64 Aligned_cols=62 Identities=10% Similarity=0.061 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q psy1512 305 FFVIVQLLFGLLLFATVLGHVANIVTSVSAARKEFQAKLDGVKTYMRMRRVPNALQVKVIKW 366 (679)
Q Consensus 305 i~~i~~~i~G~~~~a~~ig~i~~ii~~~~~~~~~~~~~~~~l~~~m~~~~lp~~l~~rv~~y 366 (679)
+...+..++..++.++++-.+....-+...-.++.+-..+++++=.|+..=+|+++.|+|+-
T Consensus 174 ~~~~~~~l~~~~~~~~lvia~~D~~~Qr~~~~k~lkMSkqEvKdE~Ke~EGdP~iK~r~R~~ 235 (361)
T PRK08156 174 WRELLVKLVLTFLACALIVLILDFIAEYFLHMKDMKMDKQEVKREYKEQEGNPEIKSKRREA 235 (361)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHhccCCHHHHHHHHHH
Confidence 33333444444444444444444443333333334444567899999999999999999863
No 95
>PF07697 7TMR-HDED: 7TM-HD extracellular; InterPro: IPR011624 This entry represents the extracellular domain of the 7TM-HD (7TM Receptors with HD hydrolase) protein family []. These proteins are known or predicted, to posses metal-dependent phospohydrolase activity.
Probab=28.86 E-value=3.8e+02 Score=26.01 Aligned_cols=54 Identities=20% Similarity=0.308 Sum_probs=38.1
Q ss_pred CcchHHHHHHHhhhhhhcccccc-ccCChhHHHHHHHhccceE--eCCCCEEEEeCCe
Q psy1512 437 PDKLKAEIAINVHLDTLKRVEIF-QNTEAGFLCELVLRLRPVL--FSPGDYICRKGNR 491 (679)
Q Consensus 437 ~~~Lr~ei~~~~~~~~l~~i~lF-~~~~~~~l~~L~~~l~~~~--~~pge~I~~~Gd~ 491 (679)
|+. ..++...+...++.-.-+| ...++....+....+.+.. +.+||.|+++||.
T Consensus 149 ~~~-~~~~~~~l~~~~i~PNl~~d~~~T~~~~~~a~~~V~pv~~~V~~Ge~IV~kGe~ 205 (222)
T PF07697_consen 149 PSE-LRELLKELLSNFIRPNLIYDEEATEKAREEALASVSPVRGMVKKGEVIVRKGEI 205 (222)
T ss_pred CHH-HHHHHHHHHHhcCCchhhcCHHHHHHHHHHHHhcCCchHhhccCCCEEecCCcE
Confidence 444 4445555555555444444 3467777888888899888 9999999999997
No 96
>PRK05702 flhB flagellar biosynthesis protein FlhB; Reviewed
Probab=27.69 E-value=7.9e+02 Score=26.38 Aligned_cols=65 Identities=11% Similarity=0.015 Sum_probs=39.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q psy1512 302 GEYFFVIVQLLFGLLLFATVLGHVANIVTSVSAARKEFQAKLDGVKTYMRMRRVPNALQVKVIKW 366 (679)
Q Consensus 302 ~e~i~~i~~~i~G~~~~a~~ig~i~~ii~~~~~~~~~~~~~~~~l~~~m~~~~lp~~l~~rv~~y 366 (679)
...+...+..++..++.++++-.+....-+...-.++.+=..+++++=.|+..=+|+++.|+|+=
T Consensus 183 ~~~~~~~~~~l~~~~~~~~~via~~D~~~qr~~~~k~lkMskqEVKdE~Ke~EGdP~iK~rrR~~ 247 (359)
T PRK05702 183 LGHALDLVLKLLLLVVLALLVIAAIDVPFQRWQYLKKLKMTKQEVKDEHKQSEGDPEVKGRIRQL 247 (359)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHhccCCHHHHHHHHHH
Confidence 34444444545554444444444444444433333444444567899999999999999999863
No 97
>TIGR00934 2a38euk potassium uptake protein, Trk family. The proteins of the Trk family are derived from Gram-negative and Gram-positive bacteria, yeast and wheat. The proteins of E. coli K12 TrkH and TrkG as well as several yeast proteins have been functionally characterized.The E. coli TrkH and TrkG proteins are complexed to two peripheral membrane proteins, TrkA, an NAD-binding protein, and TrkE, an ATP-binding protein. This complex forms the potassium uptake system. This family is specific for the eukaryotic Trk system.
Probab=27.47 E-value=2.7e+02 Score=33.07 Aligned_cols=92 Identities=17% Similarity=0.187 Sum_probs=45.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCcccCCCCCchhhhhhHHHHHHHHHHhhccc-CCcCCCCc-----
Q psy1512 228 NLFRSSSLIHYLLVIFHWNGCLYHIIYKNDGFGSRNWVYGDSDTTDVVKQYLQSYYWCTLALTTIG-DLPRPRSK----- 301 (679)
Q Consensus 228 ~~~~~~~l~~~~l~~~H~~aCl~~~i~~~~~~~~~~Wi~~~~~~~~~~~~Y~~slywa~~tlttvG-di~~p~t~----- 301 (679)
.+-.++.++...++..|+++++...............+..+. ....+.|+|-|+++....| ++ .|.+.
T Consensus 447 aLk~L~~Iv~~Y~~~~~llG~i~l~~wi~~~~~~~~~l~~~g-----in~~W~aiFhAVSAFnNAGFsL-~~dSM~~F~~ 520 (800)
T TIGR00934 447 ALKCLCSIVLVYFLGFNILGFVLLLPWINHVKTYSEVVRSKG-----VSPTWWGFFTAMSAFANLGLTL-TPESMVSFNK 520 (800)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccHHHHHhhcC-----ccHHHHHHHHHHHHHhcCCCCc-CCCcchhhcc
Confidence 333455566677788899887766543221100000111111 2234457777777777778 55 34333
Q ss_pred --hhHHHHHHHHHHHHHHHHHHHHHH
Q psy1512 302 --GEYFFVIVQLLFGLLLFATVLGHV 325 (679)
Q Consensus 302 --~e~i~~i~~~i~G~~~~a~~ig~i 325 (679)
.=.+..++.+++|-+.|..+.-.+
T Consensus 521 ~~~vllvm~~LIi~GntGFPVllrli 546 (800)
T TIGR00934 521 NSYLLLLMIWFIIIGNTGFPIFLRLI 546 (800)
T ss_pred CccHHHHHHHHHHHcccchHHHHHHH
Confidence 223344445555555555544433
No 98
>TIGR03037 anthran_nbaC 3-hydroxyanthranilate 3,4-dioxygenase. Members of this protein family, from both bacteria and eukaryotes, are the enzyme 3-hydroxyanthranilate 3,4-dioxygenase. This enzyme acts on the tryptophan metabolite 3-hydroxyanthranilate and produces 2-amino-3-carboxymuconate semialdehyde, which can rearrange spontaneously to quinolinic acid and feed into nicotinamide biosynthesis, or undergo further enzymatic degradation.
Probab=26.42 E-value=1.3e+02 Score=28.03 Aligned_cols=32 Identities=25% Similarity=0.545 Sum_probs=24.6
Q ss_pred CceEEEEEeeEEEEEe-cCCceEeEEcCCCCee
Q psy1512 612 GKEMYIVNRGRLQVVA-DNGKTVLATLRAGSYF 643 (679)
Q Consensus 612 g~~~yiI~~G~v~v~~-~~~~~~i~~L~~G~~F 643 (679)
++++|.+.+|++.+.- ++++.....|++||.|
T Consensus 48 tdE~FyqleG~~~l~v~d~g~~~~v~L~eGd~f 80 (159)
T TIGR03037 48 GEEFFYQLKGEMYLKVTEEGKREDVPIREGDIF 80 (159)
T ss_pred CceEEEEEcceEEEEEEcCCcEEEEEECCCCEE
Confidence 7899999999999854 3344446789999876
No 99
>PF14377 DUF4414: Domain of unknown function (DUF4414)
Probab=26.17 E-value=1e+02 Score=26.63 Aligned_cols=17 Identities=12% Similarity=0.110 Sum_probs=14.0
Q ss_pred CCCHHHHHHHHHHHHHH
Q psy1512 354 RVPNALQVKVIKWFDYL 370 (679)
Q Consensus 354 ~lp~~l~~rv~~y~~~~ 370 (679)
-+|+++|..|..++.-.
T Consensus 52 ALP~diR~EVl~qe~~~ 68 (108)
T PF14377_consen 52 ALPPDIREEVLAQERRE 68 (108)
T ss_pred hCCHHHHHHHHHHHHHH
Confidence 48999999999987643
No 100
>PF01484 Col_cuticle_N: Nematode cuticle collagen N-terminal domain; InterPro: IPR002486 The function of this domain is unknown. It is found in the N-terminal region of nematode cuticle collagens (see IPR008160 from INTERPRO). Cuticle is a tough elastic structure secreted by hypodermal cells and is primarily composed of collagen proteins [, ].; GO: 0042302 structural constituent of cuticle
Probab=25.46 E-value=2.7e+02 Score=20.18 Aligned_cols=41 Identities=17% Similarity=0.304 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1512 305 FFVIVQLLFGLLLFATVLGHVANIVTSVSAARKEFQAKLDG 345 (679)
Q Consensus 305 i~~i~~~i~G~~~~a~~ig~i~~ii~~~~~~~~~~~~~~~~ 345 (679)
.++.+..+..++....+...+.++-.....+..+++..-++
T Consensus 8 ~~s~~ai~~~l~~~p~i~~~i~~~~~~~~~em~~fk~~s~d 48 (53)
T PF01484_consen 8 VVSTVAILSCLITVPSIYNDIQNFQSELDDEMEEFKEISDD 48 (53)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444445555556666666666666665555555444
No 101
>COG0662 {ManC} Mannose-6-phosphate isomerase [Carbohydrate transport and metabolism]
Probab=25.18 E-value=1e+02 Score=27.41 Aligned_cols=28 Identities=21% Similarity=0.253 Sum_probs=20.7
Q ss_pred CceEEEEEeeEEEEEecCCceEeEEcCCCCe
Q psy1512 612 GKEMYIVNRGRLQVVADNGKTVLATLRAGSY 642 (679)
Q Consensus 612 g~~~yiI~~G~v~v~~~~~~~~i~~L~~G~~ 642 (679)
-+++|+|.+|+..|.-++. -..+++||.
T Consensus 57 ~dE~~~Vl~G~g~v~~~~~---~~~v~~gd~ 84 (127)
T COG0662 57 RDEHWYVLEGTGKVTIGGE---EVEVKAGDS 84 (127)
T ss_pred cceEEEEEeeEEEEEECCE---EEEecCCCE
Confidence 5899999999999987632 234666664
No 102
>PRK13109 flhB flagellar biosynthesis protein FlhB; Reviewed
Probab=25.09 E-value=7.4e+02 Score=26.56 Aligned_cols=64 Identities=11% Similarity=0.122 Sum_probs=39.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q psy1512 303 EYFFVIVQLLFGLLLFATVLGHVANIVTSVSAARKEFQAKLDGVKTYMRMRRVPNALQVKVIKW 366 (679)
Q Consensus 303 e~i~~i~~~i~G~~~~a~~ig~i~~ii~~~~~~~~~~~~~~~~l~~~m~~~~lp~~l~~rv~~y 366 (679)
..+...+..+++.++.++++-.+....-+...-.++.+-..+++++=+|+..=+|+++.|+++-
T Consensus 186 ~~~~~~~~~l~~~~~~~~~via~~D~~~q~~~~~k~lkMSkqEVKdE~Ke~EGdP~iK~r~Rq~ 249 (358)
T PRK13109 186 ELILTVAIRLVSAVAIATIVLVALDLVWARFHWRRSLRMTKQEIKDEHKQAEGDPSVKARLRSL 249 (358)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHhccCCHHHHHHHHHH
Confidence 3344444444455554554444444444444444444445578999999999999999999863
No 103
>PF07883 Cupin_2: Cupin domain; InterPro: IPR013096 This family represents the conserved barrel domain of the cupin superfamily [] (cupa is the Latin term for a small barrel). ; PDB: 2OPK_C 3BU7_B 2PHD_D 3NVC_A 3NKT_A 3NJZ_A 3NW4_A 3NST_A 3NL1_A 2H0V_A ....
Probab=24.87 E-value=93 Score=23.86 Aligned_cols=26 Identities=23% Similarity=0.364 Sum_probs=20.5
Q ss_pred eEEEEEeeEEEEEecCCceEeEEcCCCCe
Q psy1512 614 EMYIVNRGRLQVVADNGKTVLATLRAGSY 642 (679)
Q Consensus 614 ~~yiI~~G~v~v~~~~~~~~i~~L~~G~~ 642 (679)
.++++.+|++++.-++. .-.|++||.
T Consensus 21 e~~~vl~G~~~~~~~~~---~~~l~~Gd~ 46 (71)
T PF07883_consen 21 EFFYVLSGEGTLTVDGE---RVELKPGDA 46 (71)
T ss_dssp EEEEEEESEEEEEETTE---EEEEETTEE
T ss_pred EEEEEEECCEEEEEccE---EeEccCCEE
Confidence 89999999999985432 457888884
No 104
>PRK06298 type III secretion system protein; Validated
Probab=24.57 E-value=8.9e+02 Score=25.94 Aligned_cols=30 Identities=13% Similarity=0.032 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q psy1512 337 KEFQAKLDGVKTYMRMRRVPNALQVKVIKW 366 (679)
Q Consensus 337 ~~~~~~~~~l~~~m~~~~lp~~l~~rv~~y 366 (679)
++.+=..+++++=+|+..=+|+++.|+|+-
T Consensus 212 k~lkMSkqEvKdE~K~~EGdP~iK~rrR~~ 241 (356)
T PRK06298 212 KELKMEKFEVKQEFKDTEGNPEIKGRRRQI 241 (356)
T ss_pred HHCCCCHHHHHHHHHhccCCHHHHHHHHHH
Confidence 333344578999999999999999999864
No 105
>PF08566 Pam17: Mitochondrial import protein Pam17; InterPro: IPR013875 The presequence translocase-associated motor (PAM) drives the completion of preprotein translocation into the mitochondrial matrix. The Pam17 subunit is required for formation of a stable complex between cochaperones Pam16 and Pam18 and promotes the association of Pam16-Pam18 with the presequence translocase []. Mitochondria lacking Pam17 are selectively impaired in the import of matrix proteins [].
Probab=24.54 E-value=6.1e+02 Score=24.05 Aligned_cols=61 Identities=16% Similarity=0.091 Sum_probs=38.2
Q ss_pred CCCchhHHHHHHHHHHHHHHHHHHHHHH-HHHHHHH-H-HHHHHHHHHHHHHHHHHHhCCCCHH
Q psy1512 298 PRSKGEYFFVIVQLLFGLLLFATVLGHV-ANIVTSV-S-AARKEFQAKLDGVKTYMRMRRVPNA 358 (679)
Q Consensus 298 p~t~~e~i~~i~~~i~G~~~~a~~ig~i-~~ii~~~-~-~~~~~~~~~~~~l~~~m~~~~lp~~ 358 (679)
|.--.+-++.+..+.+++...++++|-. ++.+=.+ + ....++..|-.+.-+.++++++++.
T Consensus 70 ~I~GlDP~~~~g~~t~a~g~lG~L~GP~~G~~vf~l~~r~~~~~~~~Ke~eF~~rIkknRvDps 133 (173)
T PF08566_consen 70 QIMGLDPFMVYGLATLACGALGWLVGPSLGNQVFRLLNRKYLKQMDAKEKEFLARIKKNRVDPS 133 (173)
T ss_pred cccCcCHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHcCCCcc
Confidence 3334566777777888888888888753 3333222 2 2345666666677777777777663
No 106
>TIGR01404 FlhB_rel_III type III secretion protein, YscU/HrpY family. This model represents one of several families of proteins related to bacterial flagellar biosynthesis proteins and involved in bacterial type III protein secretion systems. This family is homologous to, but distinguished from, flagellar biosynthetic protein FlhB (TIGRFAMs model TIGR00328). This model may not identify all type III secretion system FlhB homologs.
Probab=24.32 E-value=8.8e+02 Score=25.80 Aligned_cols=63 Identities=14% Similarity=0.041 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q psy1512 304 YFFVIVQLLFGLLLFATVLGHVANIVTSVSAARKEFQAKLDGVKTYMRMRRVPNALQVKVIKW 366 (679)
Q Consensus 304 ~i~~i~~~i~G~~~~a~~ig~i~~ii~~~~~~~~~~~~~~~~l~~~m~~~~lp~~l~~rv~~y 366 (679)
.+...+..+++.+..++++-.+....-+...-.++.+=..+++++=+|+..=+|+++.|+++-
T Consensus 177 ~~~~~~~~l~~~~~~~~~via~~D~~~qr~~~~k~lkMskqEvKdE~Ke~EGdP~iK~r~R~~ 239 (342)
T TIGR01404 177 IVGELLKLLILVCLGFFLVVGLADFAFQRYLFMKDLKMSKDEVKREYKEQEGDPEIKSKRREL 239 (342)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHhccCCHHHHHHHHHH
Confidence 344444444444444444434444433333333333444568999999999999999999864
No 107
>TIGR00328 flhB flagellar biosynthetic protein FlhB. FlhB and its functionally equivalent orthologs, from among a larger superfamily of proteins involved in type III protein export systems, are specifically involved in flagellar protein export. The seed members are restricted and the trusted cutoff is set high such that the proteins gathered by this model play roles specifically related to flagellar structures. Full-length homologs scoring below the trusted cutoff are involved in peptide export but not necessarily in the creation of flagella.
Probab=24.18 E-value=8.9e+02 Score=25.82 Aligned_cols=65 Identities=14% Similarity=0.080 Sum_probs=39.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q psy1512 302 GEYFFVIVQLLFGLLLFATVLGHVANIVTSVSAARKEFQAKLDGVKTYMRMRRVPNALQVKVIKW 366 (679)
Q Consensus 302 ~e~i~~i~~~i~G~~~~a~~ig~i~~ii~~~~~~~~~~~~~~~~l~~~m~~~~lp~~l~~rv~~y 366 (679)
...+...+..++..++.++++-.+....-+...-.++.+=..+++++=+|+..=+|+++.|+|+=
T Consensus 176 ~~~~~~~~~~l~~~~~~~~~via~~D~~~qr~~~~k~lrMskqEVKdE~K~~EGdP~iK~rrR~~ 240 (347)
T TIGR00328 176 ITNFLDIAKSLLILVLLLLLVIAVFDYFFQRWQYIKSLKMTKQEVKDELKQSEGDPEVKGRIRQM 240 (347)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHhccCCHHHHHHHHHH
Confidence 33444444545555544444444444444444444444444578999999999999999999863
No 108
>PLN03223 Polycystin cation channel protein; Provisional
Probab=24.15 E-value=1.6e+03 Score=28.74 Aligned_cols=15 Identities=27% Similarity=0.220 Sum_probs=10.2
Q ss_pred HHHhcCCCceehhhh
Q psy1512 171 DHYMNSTTFYIDCLC 185 (679)
Q Consensus 171 ~~Ylks~~f~~Dlls 185 (679)
+.|++++|.|+|++.
T Consensus 1208 laYFKSfWNwLEIl~ 1222 (1634)
T PLN03223 1208 LAYFLSGWNYVDFAS 1222 (1634)
T ss_pred hhHhccchHHHHHHH
Confidence 467777777777743
No 109
>PF06295 DUF1043: Protein of unknown function (DUF1043); InterPro: IPR009386 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=24.01 E-value=2.8e+02 Score=24.79 Aligned_cols=10 Identities=20% Similarity=0.219 Sum_probs=6.1
Q ss_pred HHHHHHHHHH
Q psy1512 360 QVKVIKWFDY 369 (679)
Q Consensus 360 ~~rv~~y~~~ 369 (679)
++.|.+||..
T Consensus 45 k~~V~~HF~~ 54 (128)
T PF06295_consen 45 KQEVNDHFAQ 54 (128)
T ss_pred HHHHHHHHHH
Confidence 5666666654
No 110
>PRK11677 hypothetical protein; Provisional
Probab=23.99 E-value=4.1e+02 Score=24.09 Aligned_cols=9 Identities=11% Similarity=0.449 Sum_probs=6.1
Q ss_pred HHHHHHHHH
Q psy1512 360 QVKVIKWFD 368 (679)
Q Consensus 360 ~~rv~~y~~ 368 (679)
+++|.+||.
T Consensus 49 kqeV~~HFa 57 (134)
T PRK11677 49 RQELVSHFA 57 (134)
T ss_pred HHHHHHHHH
Confidence 666777765
No 111
>KOG1278|consensus
Probab=23.23 E-value=1.1e+03 Score=26.71 Aligned_cols=59 Identities=17% Similarity=0.316 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHHHHhhheeEEEE-CCeEeeC-------HHHHHH--HHhcCCCceehhhhccchHHHHH
Q psy1512 135 CLDYMADLMYVIDILIHFRTGYLE-DGVLQTD-------STKLRD--HYMNSTTFYIDCLCLLPLDFLYL 194 (679)
Q Consensus 135 ~~~~i~d~~f~~Di~l~f~t~y~~-~g~~v~d-------~~~I~~--~Ylks~~f~~Dlls~lP~~~~~~ 194 (679)
.+-.++.++|.+.+-+.|.-+|.- +.....| ||+|-. -|++ ++.-+=+-.++|+-.++.
T Consensus 434 T~~~ll~LwF~isVPLsf~G~y~g~kk~~~e~PvrTNqIpRqIP~q~~y~~-~~~~ili~GilPFg~ifI 502 (628)
T KOG1278|consen 434 TMVALLFLWFGISVPLSFVGGYFGFKKPAIEHPVRTNQIPRQIPEQPWYLN-PIPSILIAGILPFGAIFI 502 (628)
T ss_pred HHHHHHHHHHHhhhhHHHhhHHhhccCCCCCCCcccCCCcccCCCCccccc-hhhHHHhhcccchHHHHH
Confidence 344556778999998888877763 1222222 333322 2444 355556667888766543
No 112
>PHA03029 hypothetical protein; Provisional
Probab=21.54 E-value=4.2e+02 Score=21.08 Aligned_cols=40 Identities=18% Similarity=0.458 Sum_probs=28.3
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1512 300 SKGEYFFVIVQLLFGLLLFATVLGHVANIVTSVSAARKEF 339 (679)
Q Consensus 300 t~~e~i~~i~~~i~G~~~~a~~ig~i~~ii~~~~~~~~~~ 339 (679)
++.|..+-++..++=.++.--++|.+-..+-+.++-+...
T Consensus 2 ~d~ei~~~ii~~iiyiilila~igiiwg~llsi~k~raai 41 (92)
T PHA03029 2 DDAEIVFLIIAIIIYIILILAIIGIIWGFLLSINKIRAAI 41 (92)
T ss_pred CchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5678888888777777777777777777777766655443
No 113
>PRK13264 3-hydroxyanthranilate 3,4-dioxygenase; Provisional
Probab=21.49 E-value=1.5e+02 Score=28.15 Aligned_cols=34 Identities=24% Similarity=0.489 Sum_probs=25.6
Q ss_pred CCCceEEEEEeeEEEEEec-CCceEeEEcCCCCee
Q psy1512 610 EVGKEMYIVNRGRLQVVAD-NGKTVLATLRAGSYF 643 (679)
Q Consensus 610 e~g~~~yiI~~G~v~v~~~-~~~~~i~~L~~G~~F 643 (679)
..++++|.+.+|+..+.-. +++.....|++||.|
T Consensus 52 ~~tdE~FyqleG~~~l~v~d~g~~~~v~L~eGd~f 86 (177)
T PRK13264 52 DPGEEFFYQLEGDMYLKVQEDGKRRDVPIREGEMF 86 (177)
T ss_pred CCCceEEEEECCeEEEEEEcCCceeeEEECCCCEE
Confidence 3578999999999988753 333356789999876
No 114
>TIGR00934 2a38euk potassium uptake protein, Trk family. The proteins of the Trk family are derived from Gram-negative and Gram-positive bacteria, yeast and wheat. The proteins of E. coli K12 TrkH and TrkG as well as several yeast proteins have been functionally characterized.The E. coli TrkH and TrkG proteins are complexed to two peripheral membrane proteins, TrkA, an NAD-binding protein, and TrkE, an ATP-binding protein. This complex forms the potassium uptake system. This family is specific for the eukaryotic Trk system.
Probab=21.33 E-value=3.1e+02 Score=32.59 Aligned_cols=73 Identities=15% Similarity=0.124 Sum_probs=44.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCCCCCcccCCCCCchhhhhhHHHHHHHHHHhhccc----CCcCCCCchhHHHHHHH
Q psy1512 235 LIHYLLVIFHWNGCLYHIIYKNDGFGSRNWVYGDSDTTDVVKQYLQSYYWCTLALTTIG----DLPRPRSKGEYFFVIVQ 310 (679)
Q Consensus 235 l~~~~l~~~H~~aCl~~~i~~~~~~~~~~Wi~~~~~~~~~~~~Y~~slywa~~tlttvG----di~~p~t~~e~i~~i~~ 310 (679)
+++..++++-.++-+.+++....+ ....+.++..+.+.|++-|+++ -|.| |+ .-.+..-.++.+++
T Consensus 586 ill~tt~iL~~ig~ilf~lLE~nn--------~tl~~lp~g~Ril~aLFQSVst-RTAGFntVdl-s~Lspatlvl~iiL 655 (800)
T TIGR00934 586 WLFFTLVGLNAIDLILFIILDWGS--------SVVDGLSKGIKVLNGLFQSVST-RTAGFTVVDL-SQLHPAIQVSYMLM 655 (800)
T ss_pred hHHHHHHHHHHHHHHHHHHHhcCc--------cccccCCHHHHHHHHHHHhccc-ccccccccch-HhcChhHHHHHHHH
Confidence 344444444455555555443211 1123456678999999998875 5667 44 34566778888888
Q ss_pred HHHHHHH
Q psy1512 311 LLFGLLL 317 (679)
Q Consensus 311 ~i~G~~~ 317 (679)
|++|..=
T Consensus 656 MyIGa~P 662 (800)
T TIGR00934 656 MYVSVLP 662 (800)
T ss_pred HHhccCC
Confidence 8888654
No 115
>PF07077 DUF1345: Protein of unknown function (DUF1345); InterPro: IPR009781 This family consists of several hypothetical bacterial proteins of around 230 residues in length. The function of this family is unknown.
Probab=21.22 E-value=7.3e+02 Score=23.70 Aligned_cols=46 Identities=17% Similarity=0.285 Sum_probs=37.0
Q ss_pred hhHHHHHHHHHHhhccc--CCcCCCCchhHHHHHHHHHHHHHHHHHHHH
Q psy1512 277 QYLQSYYWCTLALTTIG--DLPRPRSKGEYFFVIVQLLFGLLLFATVLG 323 (679)
Q Consensus 277 ~Y~~slywa~~tlttvG--di~~p~t~~e~i~~i~~~i~G~~~~a~~ig 323 (679)
.|.+=+|+|++.-+|.. |. .+.+..=+-....-.+++.++.+.+++
T Consensus 132 ~y~DFlYfsftiG~t~q~SDv-~v~s~~~Rr~vl~hsllSF~Fnt~ilA 179 (180)
T PF07077_consen 132 DYWDFLYFSFTIGMTFQTSDV-NVTSRRMRRLVLLHSLLSFFFNTVILA 179 (180)
T ss_pred CchhhhHHHHHHHhhccccCC-CcCCHHHHHHHHHHHHHHHHHHHHHHh
Confidence 68889999998888776 88 588888888888888888777776654
Done!