Query psy1512
Match_columns 679
No_of_seqs 397 out of 3191
Neff 8.6
Searched_HMMs 29240
Date Fri Aug 16 21:06:15 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy1512.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/1512hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3beh_A MLL3241 protein; transm 100.0 1.2E-32 4.3E-37 294.1 8.4 346 91-601 3-352 (355)
2 3ukn_A Novel protein similar t 99.9 1.2E-27 4E-32 236.4 9.2 200 326-600 1-202 (212)
3 2ptm_A Hyperpolarization-activ 99.9 4.1E-27 1.4E-31 229.9 5.3 196 331-600 2-197 (198)
4 3bpz_A Potassium/sodium hyperp 99.9 1.4E-26 4.7E-31 227.0 8.8 198 330-602 2-199 (202)
5 1orq_C Potassium channel; volt 99.9 2.5E-22 8.6E-27 199.7 17.4 204 99-331 8-220 (223)
6 3shr_A CGMP-dependent protein 99.9 5.2E-23 1.8E-27 214.1 5.0 210 433-666 21-258 (299)
7 2r9r_B Paddle chimera voltage 99.8 1.3E-21 4.4E-26 216.8 8.2 282 19-336 109-435 (514)
8 3of1_A CAMP-dependent protein 99.8 4.5E-22 1.6E-26 200.3 1.9 193 449-666 5-221 (246)
9 2qcs_B CAMP-dependent protein 99.8 8.8E-21 3E-25 196.3 10.3 201 442-666 30-258 (291)
10 4din_B CAMP-dependent protein 99.8 1.6E-21 5.3E-26 209.9 3.7 199 443-665 122-348 (381)
11 3tnp_B CAMP-dependent protein 99.8 3.9E-21 1.3E-25 209.1 3.4 206 441-666 135-373 (416)
12 4f7z_A RAP guanine nucleotide 99.8 3.7E-20 1.3E-24 223.3 4.4 132 437-586 28-159 (999)
13 1o7f_A CAMP-dependent RAP1 gua 99.7 2E-18 6.9E-23 191.1 4.8 131 437-585 28-158 (469)
14 2a9h_A Voltage-gated potassium 99.6 6.4E-15 2.2E-19 136.0 10.6 131 178-339 15-147 (155)
15 4f8a_A Potassium voltage-gated 99.5 2.2E-14 7.5E-19 133.8 4.4 139 432-594 8-148 (160)
16 2ih3_C Voltage-gated potassium 99.4 6.7E-13 2.3E-17 117.8 11.6 60 275-335 59-120 (122)
17 3vou_A ION transport 2 domain 99.4 3.2E-12 1.1E-16 117.7 13.5 110 233-362 27-148 (148)
18 4h33_A LMO2059 protein; bilaye 99.3 5.9E-13 2E-17 120.6 5.8 91 277-368 43-135 (137)
19 3rvy_A ION transport protein; 99.3 8.8E-13 3E-17 135.7 7.6 207 99-335 30-245 (285)
20 3ocp_A PRKG1 protein; serine/t 99.2 3E-13 1E-17 123.2 -3.3 131 435-589 7-137 (139)
21 3eff_K Voltage-gated potassium 99.2 6.4E-11 2.2E-15 107.8 11.9 118 233-365 9-129 (139)
22 3mdp_A Cyclic nucleotide-bindi 99.2 5.7E-12 2E-16 114.7 4.4 132 450-599 5-138 (142)
23 1vp6_A CNBD, cyclic-nucleotide 99.2 4.5E-12 1.6E-16 114.9 2.1 127 449-601 9-135 (138)
24 2z69_A DNR protein; beta barre 99.1 1.8E-11 6E-16 113.1 3.3 135 450-603 11-146 (154)
25 2pqq_A Putative transcriptiona 99.1 1E-11 3.4E-16 113.9 1.3 135 450-603 4-138 (149)
26 3idb_B CAMP-dependent protein 99.1 7.1E-12 2.4E-16 117.1 -1.8 133 440-592 27-159 (161)
27 3gyd_A CNMP-BD protein, cyclic 99.0 5.5E-12 1.9E-16 121.2 -4.8 143 439-600 27-173 (187)
28 2k1e_A Water soluble analogue 99.0 2.6E-10 8.7E-15 97.9 6.0 89 233-335 9-99 (103)
29 2q67_A Potassium channel prote 99.0 2.9E-09 9.8E-14 93.0 11.9 60 277-337 49-110 (114)
30 2d93_A RAP guanine nucleotide 99.0 1.4E-11 4.9E-16 111.2 -3.8 127 437-587 2-130 (134)
31 3dkw_A DNR protein; CRP-FNR, H 99.0 1.5E-10 5.2E-15 114.2 2.7 130 450-598 8-138 (227)
32 3pna_A CAMP-dependent protein 98.9 2.2E-11 7.7E-16 112.8 -3.9 121 446-590 33-153 (154)
33 3ouf_A Potassium channel prote 98.9 7.3E-09 2.5E-13 87.6 11.3 80 233-332 7-88 (97)
34 3dv8_A Transcriptional regulat 98.9 1.4E-10 4.7E-15 114.0 0.3 129 451-598 3-133 (220)
35 3e97_A Transcriptional regulat 98.9 1.2E-10 3.9E-15 115.6 -0.6 131 450-599 5-135 (231)
36 1wgp_A Probable cyclic nucleot 98.9 4.8E-11 1.6E-15 108.0 -3.4 120 450-589 5-135 (137)
37 3d0s_A Transcriptional regulat 98.9 9.2E-11 3.1E-15 116.0 -2.2 132 450-600 5-136 (227)
38 4ava_A Lysine acetyltransferas 98.9 1E-10 3.4E-15 123.0 -2.1 129 450-599 12-140 (333)
39 4ev0_A Transcription regulator 98.9 8.7E-11 3E-15 115.1 -3.0 127 453-598 1-127 (216)
40 3shr_A CGMP-dependent protein 98.9 2.1E-10 7.3E-15 118.5 -0.2 137 447-601 153-289 (299)
41 1zyb_A Transcription regulator 98.9 3.7E-10 1.3E-14 112.2 1.3 132 450-600 17-151 (232)
42 3dn7_A Cyclic nucleotide bindi 98.8 1E-10 3.5E-15 112.6 -3.6 133 450-601 6-139 (194)
43 3fx3_A Cyclic nucleotide-bindi 98.8 1E-10 3.6E-15 116.4 -4.2 133 449-600 9-141 (237)
44 3ldc_A Calcium-gated potassium 98.8 2.3E-08 7.9E-13 81.7 10.4 52 277-329 28-81 (82)
45 4dxw_A Navrh, ION transport pr 98.8 1.6E-08 5.5E-13 100.2 9.3 206 99-331 12-225 (229)
46 2gau_A Transcriptional regulat 98.8 5.9E-10 2E-14 110.5 -1.2 125 455-598 14-138 (232)
47 3of1_A CAMP-dependent protein 98.8 8.2E-10 2.8E-14 110.3 -0.5 119 448-589 122-240 (246)
48 3iwz_A CAP-like, catabolite ac 98.7 1.2E-09 3.9E-14 108.1 0.5 131 450-599 10-146 (230)
49 2qcs_B CAMP-dependent protein 98.7 2.4E-09 8.3E-14 109.9 2.1 133 446-596 152-284 (291)
50 3tnp_B CAMP-dependent protein 98.7 2.5E-09 8.5E-14 115.9 0.9 142 448-602 264-405 (416)
51 3pjs_K KCSA, voltage-gated pot 98.7 2.7E-09 9.1E-14 100.0 0.8 64 275-339 65-130 (166)
52 1o7f_A CAMP-dependent RAP1 gua 98.7 1.3E-09 4.5E-14 120.1 -1.8 137 437-596 323-461 (469)
53 4din_B CAMP-dependent protein 98.7 2.5E-09 8.4E-14 114.6 0.3 134 447-598 244-377 (381)
54 2fmy_A COOA, carbon monoxide o 98.7 6.3E-10 2.1E-14 109.4 -4.4 122 450-598 3-124 (220)
55 3cf6_E RAP guanine nucleotide 98.6 4.8E-08 1.6E-12 112.1 9.2 109 437-666 18-130 (694)
56 3ryp_A Catabolite gene activat 98.6 4.6E-09 1.6E-13 102.1 0.6 123 457-598 2-125 (210)
57 1ft9_A Carbon monoxide oxidati 98.6 6.6E-10 2.2E-14 109.5 -5.8 119 452-597 1-119 (222)
58 2ptm_A Hyperpolarization-activ 98.6 4.2E-08 1.4E-12 94.7 5.7 62 604-666 104-167 (198)
59 3idb_B CAMP-dependent protein 98.6 9.6E-08 3.3E-12 88.7 7.8 93 574-666 34-137 (161)
60 3ocp_A PRKG1 protein; serine/t 98.5 5.7E-08 1.9E-12 87.8 5.6 92 573-666 18-118 (139)
61 2oz6_A Virulence factor regula 98.5 1.3E-08 4.4E-13 98.7 0.8 118 462-598 1-122 (207)
62 3mdp_A Cyclic nucleotide-bindi 98.5 1.2E-07 4.2E-12 85.6 6.3 63 604-666 39-109 (142)
63 1xl4_A Inward rectifier potass 98.5 3.4E-07 1.2E-11 93.7 10.0 79 238-330 56-136 (301)
64 3pna_A CAMP-dependent protein 98.5 1.3E-07 4.3E-12 87.2 6.2 91 574-666 34-133 (154)
65 3kcc_A Catabolite gene activat 98.5 1.9E-08 6.4E-13 101.7 0.3 121 460-599 55-176 (260)
66 3bpz_A Potassium/sodium hyperp 98.5 1.2E-07 4.2E-12 91.7 5.8 90 575-666 69-167 (202)
67 4f8a_A Potassium voltage-gated 98.4 2.9E-07 1E-11 85.0 7.4 90 575-666 24-124 (160)
68 2kyh_A KVAP, voltage-gated pot 98.4 4E-07 1.4E-11 82.9 8.0 79 100-193 22-100 (147)
69 3gyd_A CNMP-BD protein, cyclic 98.4 2.2E-07 7.7E-12 88.7 6.5 94 573-666 34-139 (187)
70 1o5l_A Transcriptional regulat 98.4 1.5E-08 5.2E-13 99.0 -2.6 127 455-600 3-130 (213)
71 3ukn_A Novel protein similar t 98.4 2.1E-07 7.2E-12 90.7 4.8 64 601-666 105-172 (212)
72 2d93_A RAP guanine nucleotide 98.4 1.2E-07 4.2E-12 85.0 2.7 63 602-666 48-113 (134)
73 2pqq_A Putative transcriptiona 98.4 6.1E-07 2.1E-11 81.5 7.4 63 604-666 38-105 (149)
74 1p7b_A Integral membrane chann 98.3 6.6E-07 2.3E-11 92.5 8.0 55 276-331 95-151 (333)
75 3e6c_C CPRK, cyclic nucleotide 98.3 3.8E-08 1.3E-12 98.7 -1.4 126 452-599 10-135 (250)
76 1ors_C Potassium channel; volt 98.3 1.2E-06 4.2E-11 78.4 8.6 103 99-216 6-108 (132)
77 2qks_A KIR3.1-prokaryotic KIR 98.3 2.3E-06 8E-11 88.2 11.3 54 277-331 78-133 (321)
78 1vp6_A CNBD, cyclic-nucleotide 98.3 3.6E-07 1.2E-11 82.1 4.7 59 604-666 44-104 (138)
79 2z69_A DNR protein; beta barre 98.3 4E-07 1.4E-11 83.4 4.9 94 573-666 7-113 (154)
80 4ava_A Lysine acetyltransferas 98.3 6.2E-07 2.1E-11 93.8 6.4 63 604-666 46-112 (333)
81 4f7z_A RAP guanine nucleotide 98.3 5.9E-08 2E-12 116.9 -1.8 122 438-582 324-447 (999)
82 1wgp_A Probable cyclic nucleot 98.3 3.8E-07 1.3E-11 81.9 3.8 63 604-666 39-116 (137)
83 3um7_A Potassium channel subfa 98.3 2E-06 6.9E-11 87.6 9.1 75 277-358 115-191 (309)
84 3fx3_A Cyclic nucleotide-bindi 98.2 1E-06 3.4E-11 87.3 6.6 96 571-666 4-111 (237)
85 3um7_A Potassium channel subfa 98.2 4E-06 1.4E-10 85.4 10.7 57 277-334 224-288 (309)
86 3e97_A Transcriptional regulat 98.2 1.5E-06 5.1E-11 85.6 6.2 63 604-666 39-106 (231)
87 3dn7_A Cyclic nucleotide bindi 98.2 1.4E-06 4.8E-11 83.3 5.5 64 603-666 39-108 (194)
88 4gx0_A TRKA domain protein; me 98.2 6.7E-06 2.3E-10 92.6 11.7 87 229-331 17-107 (565)
89 3b02_A Transcriptional regulat 98.1 3.2E-06 1.1E-10 81.0 7.2 63 603-666 8-75 (195)
90 3d0s_A Transcriptional regulat 98.1 8.9E-07 3.1E-11 87.0 3.3 63 604-666 39-106 (227)
91 1zyb_A Transcription regulator 98.1 3.1E-06 1.1E-10 83.6 7.1 63 604-666 53-121 (232)
92 4ev0_A Transcription regulator 98.1 1.1E-06 3.9E-11 85.4 3.2 63 604-666 32-99 (216)
93 2gau_A Transcriptional regulat 98.1 2E-06 6.8E-11 84.8 4.7 67 600-666 39-110 (232)
94 3iwz_A CAP-like, catabolite ac 98.1 2.1E-06 7.3E-11 84.3 4.6 65 602-666 42-112 (230)
95 3sya_A G protein-activated inw 98.1 1.2E-05 4E-10 83.0 10.1 90 238-332 52-149 (340)
96 2oz6_A Virulence factor regula 98.1 2.4E-06 8.1E-11 82.5 4.7 65 602-666 21-94 (207)
97 3ryp_A Catabolite gene activat 98.1 2.3E-06 8E-11 82.7 4.6 65 602-666 27-97 (210)
98 3kcc_A Catabolite gene activat 98.0 2.8E-06 9.6E-11 85.5 4.7 63 604-666 79-147 (260)
99 3la7_A Global nitrogen regulat 98.0 3.4E-07 1.2E-11 91.3 -2.7 117 464-599 30-151 (243)
100 3dkw_A DNR protein; CRP-FNR, H 98.0 2.6E-06 8.9E-11 83.5 3.1 93 574-666 5-110 (227)
101 3dv8_A Transcriptional regulat 98.0 8.2E-06 2.8E-10 79.5 6.5 63 604-666 36-105 (220)
102 2bgc_A PRFA; bacterial infecti 98.0 8.4E-07 2.9E-11 88.1 -0.8 121 460-600 2-127 (238)
103 1o5l_A Transcriptional regulat 97.9 3.8E-06 1.3E-10 81.7 3.4 66 601-666 29-100 (213)
104 3ukm_A Potassium channel subfa 97.9 2.9E-05 9.8E-10 77.9 9.5 56 277-333 201-265 (280)
105 3spc_A Inward-rectifier K+ cha 97.8 5.1E-05 1.8E-09 78.3 9.9 90 238-331 54-151 (343)
106 3ukm_A Potassium channel subfa 97.8 2.7E-05 9.1E-10 78.1 7.5 54 277-331 93-148 (280)
107 3la7_A Global nitrogen regulat 97.7 3.4E-05 1.1E-09 76.6 6.7 64 603-666 52-122 (243)
108 2zcw_A TTHA1359, transcription 97.7 2.9E-05 9.8E-10 74.6 5.9 63 603-666 14-83 (202)
109 3e6c_C CPRK, cyclic nucleotide 97.7 1.7E-05 5.8E-10 79.1 4.4 65 600-666 38-106 (250)
110 3beh_A MLL3241 protein; transm 97.7 5.1E-06 1.8E-10 87.8 0.0 66 597-666 254-321 (355)
111 2bgc_A PRFA; bacterial infecti 97.7 4.7E-05 1.6E-09 75.3 6.8 60 604-664 28-95 (238)
112 2fmy_A COOA, carbon monoxide o 97.6 4.3E-05 1.5E-09 74.4 4.4 59 603-666 36-96 (220)
113 3b02_A Transcriptional regulat 97.5 6E-06 2E-10 79.1 -2.2 96 477-598 2-97 (195)
114 1lnq_A MTHK channels, potassiu 97.5 1.1E-05 3.9E-10 84.4 -1.3 57 277-334 45-103 (336)
115 1ft9_A Carbon monoxide oxidati 97.2 0.00013 4.3E-09 71.2 3.2 59 603-666 32-92 (222)
116 2zcw_A TTHA1359, transcription 97.0 2E-05 7E-10 75.7 -4.7 99 471-596 2-102 (202)
117 3cf6_E RAP guanine nucleotide 72.9 0.054 1.8E-06 61.9 -9.3 42 549-590 108-150 (694)
118 3kg2_A Glutamate receptor 2; I 70.4 3.8 0.00013 47.4 5.5 54 277-331 563-617 (823)
119 3es4_A Uncharacterized protein 52.2 10 0.00036 32.2 3.4 31 612-644 61-91 (116)
120 2r9r_B Paddle chimera voltage 50.4 75 0.0026 34.4 10.8 22 130-151 271-292 (514)
121 3bcw_A Uncharacterized protein 43.5 21 0.00072 30.5 4.1 30 612-643 68-97 (123)
122 2pyt_A Ethanolamine utilizatio 38.4 33 0.0011 29.6 4.6 29 612-643 75-103 (133)
123 1o5u_A Novel thermotoga mariti 34.0 57 0.0019 26.6 5.1 31 611-643 48-78 (101)
124 3lwc_A Uncharacterized protein 32.7 47 0.0016 27.9 4.6 30 611-643 58-87 (119)
125 2vpv_A Protein MIF2, MIF2P; nu 32.2 31 0.0011 31.2 3.5 30 611-643 109-138 (166)
126 1yfu_A 3-hydroxyanthranilate-3 31.8 45 0.0015 30.3 4.3 33 611-643 54-87 (174)
127 3myx_A Uncharacterized protein 29.2 47 0.0016 32.0 4.3 30 612-643 186-215 (238)
128 1orq_C Potassium channel; volt 28.6 3.5E+02 0.012 24.9 13.1 16 200-215 100-115 (223)
129 2opk_A Hypothetical protein; p 26.9 51 0.0017 27.2 3.7 33 610-643 51-83 (112)
130 4axo_A EUTQ, ethanolamine util 26.2 62 0.0021 28.7 4.3 30 611-643 83-112 (151)
131 2fqp_A Hypothetical protein BP 23.5 59 0.002 25.8 3.4 31 613-644 40-70 (97)
132 2ozj_A Cupin 2, conserved barr 22.5 1E+02 0.0034 25.1 4.8 43 611-660 57-100 (114)
133 1zvf_A 3-hydroxyanthranilate 3 22.2 76 0.0026 28.8 4.0 34 610-643 52-90 (176)
No 1
>3beh_A MLL3241 protein; transmembrane protein, membrane protein; HET: LDA; 3.10A {Mesorhizobium loti} PDB: 2zd9_A*
Probab=99.97 E-value=1.2e-32 Score=294.09 Aligned_cols=346 Identities=16% Similarity=0.146 Sum_probs=136.1
Q ss_pred EcCCChhHHHHHHHHHHHHHHHHHHHHHhhhcccccccchhhHHHHHHHHHHHHHHHHHhhheeEEEECCeEeeCHHHHH
Q psy1512 91 FDPAGRFSYYWSMIVSLAFLYNFWVIIYRFAFQEINRESLVIWFCLDYMADLMYVIDILIHFRTGYLEDGVLQTDSTKLR 170 (679)
Q Consensus 91 i~P~s~~~~~W~~i~~~~~~~~~~~ip~~~~F~~~~~~~~~~~~~~~~i~d~~f~~Di~l~f~t~y~~~g~~v~d~~~I~ 170 (679)
+.|+|+. ++++++++++.+++++... .++.........+..++.++-++|.+|+++++.... -.
T Consensus 3 ~~p~s~~---f~~~~~~~i~ls~~~~~~~-t~~~~~~~~~~~~~~~~~~~~~~f~~e~~~r~~~~~------------~~ 66 (355)
T 3beh_A 3 VLPFLRI---YAPLNAVLAAPGLLAVAAL-TIPDMSGRSRLALAALLAVIWGAYLLQLAATLLKRR------------AG 66 (355)
T ss_dssp ----CCS---SSSHHHHHHHHHHHHHHHH-TSSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC------------SC
T ss_pred CCchhHH---HHHHHHHHHHHHHHHHHHH-cccchhhhHHHHHHHHHhHHHHHHHHHHHHhccccc------------cc
Confidence 4577764 4666777777777776665 333322222222334555665668999999885321 02
Q ss_pred HHHhcCCCceehhhhc-cchHHHHHh-hhhHHHHHHHHHHHHHHHHHHHHhhhhhccchhHHHHHHHHHHHHHHHHHHHH
Q psy1512 171 DHYMNSTTFYIDCLCL-LPLDFLYLS-IGFNSILRLFRLVKIYRFWAFMDRTERHTNYPNLFRSSSLIHYLLVIFHWNGC 248 (679)
Q Consensus 171 ~~Ylks~~f~~Dlls~-lP~~~~~~~-~~~~~~lrl~rllrl~rl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~H~~aC 248 (679)
..|.+++|+++|++++ +|+..+... ....+++|++|++|+.|..+.++.+.... ....-.+..++..++++.|++||
T Consensus 67 ~~~~~~~~~i~Dl~~i~~p~~~~~~~~~~~~r~lr~~R~lrl~r~~~~~~~l~~~l-~~~~~~l~~~~~~~~~~~~~~a~ 145 (355)
T 3beh_A 67 VVRDRTPKIAIDVLAVLVPLAAFLLDGSPDWSLYCAVWLLKPLRDSTFFPVLGRVL-ANEARNLIGVTTLFGVVLFAVAL 145 (355)
T ss_dssp SSCCCHHHHHHHHHHHHHHHHHHHSCCSGGGGGGGGGGGSHHHHTCSSHHHHHHHH-HHTHHHHHHHHHHHHHHHHHHHH
T ss_pred ceeccCcchHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH
Confidence 2355667999999998 698765321 11223333333333333222222222211 11223345566677788999999
Q ss_pred HHHHHHhcCCCCCCCcccCCCCCchhhhhhHHHHHHHHHHhhccc--CCcCCCCchhHHHHHHHHHHHHHHHHHHHHHHH
Q psy1512 249 LYHIIYKNDGFGSRNWVYGDSDTTDVVKQYLQSYYWCTLALTTIG--DLPRPRSKGEYFFVIVQLLFGLLLFATVLGHVA 326 (679)
Q Consensus 249 l~~~i~~~~~~~~~~Wi~~~~~~~~~~~~Y~~slywa~~tlttvG--di~~p~t~~e~i~~i~~~i~G~~~~a~~ig~i~ 326 (679)
++|.+.... +.+.+..|.+|+||+++||||+| |+ .|.|..|+++++++|++|++++++++|.++
T Consensus 146 ~~~~~e~~~-------------~~~~f~~~~~s~y~~~~t~ttvGygd~-~p~t~~~~~~~~~~~~~g~~~~~~~~~~i~ 211 (355)
T 3beh_A 146 AAYVIERDI-------------QPEKFGSIPQAMWWAVVTLSTTGYGDT-IPQSFAGRVLAGAVMMSGIGIFGLWAGILA 211 (355)
T ss_dssp HHHHHHTTT-------------CHHHHSSHHHHHHHHHHHHTTCCCSSS-CCCSHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhcCC-------------CCcccccHHHHHHHHHhheeecCCCCC-CCCChhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999886432 12346789999999999999997 88 699999999999999999999999999998
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhhcccCchhHHhhcCCCCCCCCcccccCcchhhHH
Q psy1512 327 NIVTSVSAARKEFQAKLDGVKTYMRMRRVPNALQVKVIKWFDYLWLTQKCSDEEKAVSCLPGPGSSSTKLVHGGQYELEE 406 (679)
Q Consensus 327 ~ii~~~~~~~~~~~~~~~~l~~~m~~~~lp~~l~~rv~~y~~~~w~~~~~~~~~~~l~~lp~~~~~~~~~~~~~~~~~~~ 406 (679)
+.+.+..++ +++.+
T Consensus 212 ~~~~~~~~~----------------------------~~~~~-------------------------------------- 225 (355)
T 3beh_A 212 TGFYQEVRR----------------------------GDFVR-------------------------------------- 225 (355)
T ss_dssp HHHHHHHHH----------------------------HHHHH--------------------------------------
T ss_pred HHHHHHHHH----------------------------Hhhcc--------------------------------------
Confidence 877542110 00100
Q ss_pred HHHHhhccCccccccCCCccccccCCCcccCcchHHHHHHHhhhhhhccccccccCChhHHHHHHHhccceEeCCCCEEE
Q psy1512 407 IAIVSNQATPNQVKYGSGPLYMSANGPKVVPDKLKAEIAINVHLDTLKRVEIFQNTEAGFLCELVLRLRPVLFSPGDYIC 486 (679)
Q Consensus 407 ~~~~~n~~~~~~~~~~~~~~~~~~~~~~~l~~~Lr~ei~~~~~~~~l~~i~lF~~~~~~~l~~L~~~l~~~~~~pge~I~ 486 (679)
+.+.++++|+|++++++++++++..++.+.|+|||+|+
T Consensus 226 ------------------------------------------~~~~l~~~~lf~~ls~~~l~~l~~~~~~~~~~~ge~I~ 263 (355)
T 3beh_A 226 ------------------------------------------NWQLVAAVPLFQKLGPAVLVEIVRALRARTVPAGAVIC 263 (355)
T ss_dssp ------------------------------------------HHC-----------------------------------
T ss_pred ------------------------------------------cchhhhcccccccCCHHHHHHHHHhceEEEECCCCEEE
Confidence 12346678999999999999999999999999999999
Q ss_pred EeCCeeeeEEEEeeeeEEEEEehhhHHHHHhhChhHHHHHHHHHHHHHhhhccCcccCCCCCCCCCCCCccccccccccc
Q psy1512 487 RKGNRRTASVRSVGYSDLFVLSKTDMWDVLKEYPAARVRLESIAVKRLQKYKRTPLEKGISPSPFPGNRRTASVRSVGYS 566 (679)
Q Consensus 487 ~~Gd~r~asv~a~~~~~ly~I~~g~~~~vl~~~p~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~r~atv~A~~~~ 566 (679)
++||+ .+.+|+|.+|.+.....+ ......|+..++.+++.+.||+++++|.++|
T Consensus 264 ~~G~~---------~~~ly~I~~G~v~v~~~~-----------------~~~l~~G~~fGe~~~l~~~~~~~~~~A~~~~ 317 (355)
T 3beh_A 264 RIGEP---------GDRMFFVVEGSVSVATPN-----------------PVELGPGAFFGEMALISGEPRSATVSAATTV 317 (355)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred eCCCc---------CceEEEEEeeEEEEEECC-----------------eeEECCCCEEeehHHhCCCCcceEEEECccE
Confidence 99998 789999988876544321 0122234443444778899999999999999
Q ss_pred ceeecccchhHHHhhcChhHhhhhHHHHHHHhhhc
Q psy1512 567 DLFVLSKTDMWDVLKEYPAARVRLESIAVKRLQKY 601 (679)
Q Consensus 567 ~l~~L~r~~f~~il~~~P~~~~~l~~~~~~rl~~~ 601 (679)
+++.|++++|.++++++|++.+.+.+.+.+|++..
T Consensus 318 ~l~~i~~~~f~~ll~~~p~~~~~l~~~l~~rl~~~ 352 (355)
T 3beh_A 318 SLLSLHSADFQMLCSSSPEIAEIFRKTALERRGAA 352 (355)
T ss_dssp -----------------------------------
T ss_pred EEEEEeHHHHHHHHHHCHHHHHHHHHHHHHHHHhh
Confidence 99999999999999999999999999988887654
No 2
>3ukn_A Novel protein similar to vertebrate potassium VOL channel, subfamily H (EAG-related)...; KCNH, ELK, ERG, CNBD, CNBHD, C-linker, ION channel; 2.20A {Danio rerio} PDB: 3ukt_B 3ukv_B
Probab=99.94 E-value=1.2e-27 Score=236.42 Aligned_cols=200 Identities=21% Similarity=0.370 Sum_probs=164.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhhcccCchhHHhhcCCCCCCCCcccccCcchhhH
Q psy1512 326 ANIVTSVSAARKEFQAKLDGVKTYMRMRRVPNALQVKVIKWFDYLWLTQKCSDEEKAVSCLPGPGSSSTKLVHGGQYELE 405 (679)
Q Consensus 326 ~~ii~~~~~~~~~~~~~~~~l~~~m~~~~lp~~l~~rv~~y~~~~w~~~~~~~~~~~l~~lp~~~~~~~~~~~~~~~~~~ 405 (679)
++++++++.++.+|++++..+++||+++++|++||.||++||+|.|+.+++.|++++++.|
T Consensus 1 g~ii~~~~~~~~~~~~~~~~i~~ym~~~~i~~~l~~rv~~y~~~~~~~~~~~~~~~il~~L------------------- 61 (212)
T 3ukn_A 1 GAMDQRMYSRRSLYHTRTKDLKDFIRVHRLPKALAQRMLECFQTTWSVNNGIDVSELLKDF------------------- 61 (212)
T ss_dssp -----------CHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCCTGGGCCCCCTTTTS-------------------
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCCCCHHHHHHHc-------------------
Confidence 4688999999999999999999999999999999999999999999999999988877766
Q ss_pred HHHHHhhccCccccccCCCccccccCCCcccCcchHHHHHHHhhhhhhccccccccCChhHHHHHHHhccceEeCCCCEE
Q psy1512 406 EIAIVSNQATPNQVKYGSGPLYMSANGPKVVPDKLKAEIAINVHLDTLKRVEIFQNTEAGFLCELVLRLRPVLFSPGDYI 485 (679)
Q Consensus 406 ~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~l~~~Lr~ei~~~~~~~~l~~i~lF~~~~~~~l~~L~~~l~~~~~~pge~I 485 (679)
|+.||.++..+++..++ ++|+|++++++++..++..++.+.|.|||+|
T Consensus 62 -------------------------------p~~L~~~i~~~~~~~l~-~~~~f~~l~~~~l~~l~~~~~~~~~~~ge~I 109 (212)
T 3ukn_A 62 -------------------------------PDELRADIAMHLNKELL-QLPLFESASRGCLRSLSLIIKTSFCAPGEFL 109 (212)
T ss_dssp -------------------------------CHHHHHHHHTTCCCGGG-GSGGGTTCCHHHHHHHHHHCEEEEECTTCEE
T ss_pred -------------------------------CHHHHHHHHHHHHHHHH-hcHHhhcCCHHHHHHHHHHhheEEeCCCCEE
Confidence 99999999999999887 8999999999999999999999999999999
Q ss_pred EEeCCeeeeEEEEeeeeEEEEEehhhHHHHHhhChhHHHHHHHHHHHHHhhhccCcccCCCCCCCCCCC--Ccccccccc
Q psy1512 486 CRKGNRRTASVRSVGYSDLFVLSKTDMWDVLKEYPAARVRLESIAVKRLQKYKRTPLEKGISPSPFPGN--RRTASVRSV 563 (679)
Q Consensus 486 ~~~Gd~r~asv~a~~~~~ly~I~~g~~~~vl~~~p~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~--~r~atv~A~ 563 (679)
+++||+ .+.+|+|.+|.+....+ + ..-.....|+..++.+++.+. +|+++|+|.
T Consensus 110 ~~~G~~---------~~~ly~I~~G~v~v~~~------~---------~~~~~l~~G~~fGe~~~~~~~~~~~~~~v~a~ 165 (212)
T 3ukn_A 110 IRQGDA---------LQAIYFVCSGSMEVLKD------N---------TVLAILGKGDLIGSDSLTKEQVIKTNANVKAL 165 (212)
T ss_dssp ECTTSB---------CCEEEEEEECCEEEESS------S---------CEEEEECTTCEEECSCCSSSSCCBBCSEEEES
T ss_pred EECCCc---------ccEEEEEEecEEEEEEC------C---------eEEEEecCCCCcCcHHhccCCCCCcceEEEEc
Confidence 999998 78999998887643211 0 011122334444445777777 999999999
Q ss_pred cccceeecccchhHHHhhcChhHhhhhHHHHHHHhhh
Q psy1512 564 GYSDLFVLSKTDMWDVLKEYPAARVRLESIAVKRLQK 600 (679)
Q Consensus 564 ~~~~l~~L~r~~f~~il~~~P~~~~~l~~~~~~rl~~ 600 (679)
++|+++.|++++|.++++++|++...+...+.+++..
T Consensus 166 ~~~~l~~i~~~~f~~ll~~~p~~~~~~~~~l~~~l~~ 202 (212)
T 3ukn_A 166 TYCDLQYISLKGLREVLRLYPEYAQKFVSEIQHDLTY 202 (212)
T ss_dssp SCEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHHHEEE
T ss_pred ccEEEEEEeHHHHHHHHHHChHHHHHHHHHHHHhhcc
Confidence 9999999999999999999999999999998886654
No 3
>2ptm_A Hyperpolarization-activated (IH) channel; ION channel, cyclic nucleotide binding domain, C-linker, CAM SPHCN1, HCN; HET: CMP; 1.93A {Strongylocentrotus purpuratus}
Probab=99.93 E-value=4.1e-27 Score=229.94 Aligned_cols=196 Identities=24% Similarity=0.417 Sum_probs=167.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhhcccCchhHHhhcCCCCCCCCcccccCcchhhHHHHHH
Q psy1512 331 SVSAARKEFQAKLDGVKTYMRMRRVPNALQVKVIKWFDYLWLTQKCSDEEKAVSCLPGPGSSSTKLVHGGQYELEEIAIV 410 (679)
Q Consensus 331 ~~~~~~~~~~~~~~~l~~~m~~~~lp~~l~~rv~~y~~~~w~~~~~~~~~~~l~~lp~~~~~~~~~~~~~~~~~~~~~~~ 410 (679)
+++.++.+|+++++.+++||+.+++|++||.||++||+|.|+ +++.+++++++.|
T Consensus 2 ~~~~~~~~~~~~~~~i~~~m~~~~i~~~l~~rv~~y~~~~~~-~~~~~e~~il~~l------------------------ 56 (198)
T 2ptm_A 2 AMDSSSRQYREKLKQVEEYMQYRKLPSHLRNKILDYYEYRYR-GKMFDERHIFREV------------------------ 56 (198)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHT-TCCCCSHHHHHHS------------------------
T ss_pred CCCHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHc-ccCCCHHHHHHHc------------------------
Confidence 567889999999999999999999999999999999999997 5788999999887
Q ss_pred hhccCccccccCCCccccccCCCcccCcchHHHHHHHhhhhhhccccccccCChhHHHHHHHhccceEeCCCCEEEEeCC
Q psy1512 411 SNQATPNQVKYGSGPLYMSANGPKVVPDKLKAEIAINVHLDTLKRVEIFQNTEAGFLCELVLRLRPVLFSPGDYICRKGN 490 (679)
Q Consensus 411 ~n~~~~~~~~~~~~~~~~~~~~~~~l~~~Lr~ei~~~~~~~~l~~i~lF~~~~~~~l~~L~~~l~~~~~~pge~I~~~Gd 490 (679)
|+.||.++..+.+.++++++|+|++++++++..++..++.+.|.|||+|+++||
T Consensus 57 --------------------------~~~Lr~~i~~~~~~~~l~~~~~f~~l~~~~l~~l~~~~~~~~~~~ge~I~~~G~ 110 (198)
T 2ptm_A 57 --------------------------SESIRQDVANYNCRDLVASVPFFVGADSNFVTRVVTLLEFEVFQPADYVIQEGT 110 (198)
T ss_dssp --------------------------CHHHHHHHHHHHTHHHHHHCGGGTTCCHHHHHHHHHHCEEEEECTTCEEECTTS
T ss_pred --------------------------CHHHHHHHHHHHHHHHHhcCcchhcCCHHHHHHHHHhccceeeCCCCEEEECCC
Confidence 999999999999999999999999999999999999999999999999999999
Q ss_pred eeeeEEEEeeeeEEEEEehhhHHHHHhhChhHHHHHHHHHHHHHhhhccCcccCCCCCCCCCCCCcccccccccccceee
Q psy1512 491 RRTASVRSVGYSDLFVLSKTDMWDVLKEYPAARVRLESIAVKRLQKYKRTPLEKGISPSPFPGNRRTASVRSVGYSDLFV 570 (679)
Q Consensus 491 ~r~asv~a~~~~~ly~I~~g~~~~vl~~~p~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~r~atv~A~~~~~l~~ 570 (679)
+ .+.+|+|.+|.+.....+ |. .-.....|+..++.+++.+.||+++++|.++|+++.
T Consensus 111 ~---------~~~ly~I~~G~v~~~~~~-----g~---------~~~~l~~G~~fGe~~~~~~~~~~~~~~a~~~~~l~~ 167 (198)
T 2ptm_A 111 F---------GDRMFFIQQGIVDIIMSD-----GV---------IATSLSDGSYFGEICLLTRERRVASVKCETYCTLFS 167 (198)
T ss_dssp C---------CSEEEEEEECCEEEECTT-----SC---------EEEEECTTCEESCHHHHHSSCCSSEEEESSCEEEEE
T ss_pred c---------CcEEEEEEeCEEEEEecC-----Ce---------EEEEecCCCEechHHHcCCCccceEEEEeeEEEEEE
Confidence 8 778999988876432210 10 001122333333345677899999999999999999
Q ss_pred cccchhHHHhhcChhHhhhhHHHHHHHhhh
Q psy1512 571 LSKTDMWDVLKEYPAARVRLESIAVKRLQK 600 (679)
Q Consensus 571 L~r~~f~~il~~~P~~~~~l~~~~~~rl~~ 600 (679)
|++++|.++++++|++...+...+.+|++.
T Consensus 168 i~~~~f~~ll~~~p~~~~~~~~~~~~rl~~ 197 (198)
T 2ptm_A 168 LSVQHFNQVLDEFPAMRKTMEEIAVRRLTR 197 (198)
T ss_dssp EEHHHHHHHHHHCHHHHHHHHHHHHTCC--
T ss_pred EeHHHHHHHHHHChHHHHHHHHHHHHHHhc
Confidence 999999999999999999999988887653
No 4
>3bpz_A Potassium/sodium hyperpolarization-activated cyclic nucleotide-gated channel 2; CNBD, C-linker, pacemaker, HCN, HCN2, CAP, PKA, CAMP, ION channel; HET: CMP; 1.65A {Mus musculus} PDB: 3ffq_A 1q3e_A* 1q43_A* 1q5o_A* 3u10_A* 2q0a_A* 3etq_A* 3u11_A* 3otf_A* 3u0z_A*
Probab=99.93 E-value=1.4e-26 Score=226.99 Aligned_cols=198 Identities=25% Similarity=0.429 Sum_probs=169.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhhcccCchhHHhhcCCCCCCCCcccccCcchhhHHHHH
Q psy1512 330 TSVSAARKEFQAKLDGVKTYMRMRRVPNALQVKVIKWFDYLWLTQKCSDEEKAVSCLPGPGSSSTKLVHGGQYELEEIAI 409 (679)
Q Consensus 330 ~~~~~~~~~~~~~~~~l~~~m~~~~lp~~l~~rv~~y~~~~w~~~~~~~~~~~l~~lp~~~~~~~~~~~~~~~~~~~~~~ 409 (679)
++++..+.+|++++..+++||+.+++|++||.||++||+|.|+ +++.+++++++.|
T Consensus 2 ~~~~~~~~~~~~~~~~i~~~m~~~~i~~~l~~rv~~y~~~~~~-~~~~~e~~il~~l----------------------- 57 (202)
T 3bpz_A 2 SAMDSSRRQYQEKYKQVEQYMSFHKLPADFRQKIHDYYEHRYQ-GKMFDEDSILGEL----------------------- 57 (202)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHT-TCCCCHHHHHHHS-----------------------
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHh-ccCCCHHHHHHHc-----------------------
Confidence 4678899999999999999999999999999999999999996 5788999999887
Q ss_pred HhhccCccccccCCCccccccCCCcccCcchHHHHHHHhhhhhhccccccccCChhHHHHHHHhccceEeCCCCEEEEeC
Q psy1512 410 VSNQATPNQVKYGSGPLYMSANGPKVVPDKLKAEIAINVHLDTLKRVEIFQNTEAGFLCELVLRLRPVLFSPGDYICRKG 489 (679)
Q Consensus 410 ~~n~~~~~~~~~~~~~~~~~~~~~~~l~~~Lr~ei~~~~~~~~l~~i~lF~~~~~~~l~~L~~~l~~~~~~pge~I~~~G 489 (679)
|+.||.++..+.+.++++++|+|++++++++..|+..++.+.|.|||+|+++|
T Consensus 58 ---------------------------~~~L~~~i~~~~~~~~l~~~~~f~~l~~~~l~~l~~~~~~~~~~~ge~I~~~g 110 (202)
T 3bpz_A 58 ---------------------------NGPLREKIVNFNCRKLVASMPLFANADPNFVTAMLTKLKFEVFQPGDYIIREG 110 (202)
T ss_dssp ---------------------------CHHHHHHHHHHHTHHHHHTCHHHHTSCHHHHHHHHHHCEEEEECTTCEEECTT
T ss_pred ---------------------------CHHHHHHHHHHHHHHHHhcCCchhcCCHHHHHHHHHhCCceEECCCCEEEECC
Confidence 99999999999999999999999999999999999999999999999999999
Q ss_pred CeeeeEEEEeeeeEEEEEehhhHHHHHhhChhHHHHHHHHHHHHHhhhccCcccCCCCCCCCCCCCccccccccccccee
Q psy1512 490 NRRTASVRSVGYSDLFVLSKTDMWDVLKEYPAARVRLESIAVKRLQKYKRTPLEKGISPSPFPGNRRTASVRSVGYSDLF 569 (679)
Q Consensus 490 d~r~asv~a~~~~~ly~I~~g~~~~vl~~~p~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~r~atv~A~~~~~l~ 569 (679)
|+ .+.+|+|.+|.+.....+ |. ......|+..++.+++.+.+|+++|+|.++|+++
T Consensus 111 ~~---------~~~ly~I~~G~v~v~~~~-----g~----------~~~l~~G~~fGe~~~~~~~~~~~~v~a~~~~~l~ 166 (202)
T 3bpz_A 111 TI---------GKKMYFIQHGVVSVLTKG-----NK----------EMKLSDGSYFGEICLLTRGRRTASVRADTYCRLY 166 (202)
T ss_dssp SB---------CCEEEEEEECEEEEECTT-----SC----------CEEEETTCEECHHHHHHCSBCSSEEEESSCEEEE
T ss_pred Cc---------CCeEEEEeccEEEEEECC-----Ce----------EEEEcCCCEeccHHHhcCCCcccEEEEeeEEEEE
Confidence 98 778999999876432110 10 0112233333334567788999999999999999
Q ss_pred ecccchhHHHhhcChhHhhhhHHHHHHHhhhcC
Q psy1512 570 VLSKTDMWDVLKEYPAARVRLESIAVKRLQKYK 602 (679)
Q Consensus 570 ~L~r~~f~~il~~~P~~~~~l~~~~~~rl~~~~ 602 (679)
.|++++|.++++++|++...+...+.+|++...
T Consensus 167 ~i~~~~f~~ll~~~p~~~~~~~~~~~~rl~~~~ 199 (202)
T 3bpz_A 167 SLSVDNFNEVLEEYPMMRRAFETVAIDRLDRIG 199 (202)
T ss_dssp EEEHHHHHHHHHHSGGGHHHHHHHHHHHHHHC-
T ss_pred EEEHHHHHHHHHHCHHHHHHHHHHHHHHHHHhc
Confidence 999999999999999999999999988887654
No 5
>1orq_C Potassium channel; voltage-dependent, KVAP, FAB complex, MEM protein; 3.20A {Aeropyrum pernix} SCOP: f.14.1.1 PDB: 2a0l_A
Probab=99.88 E-value=2.5e-22 Score=199.72 Aligned_cols=204 Identities=19% Similarity=0.292 Sum_probs=149.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhcccccccchhhHHHHHHHHHHHHHHHHHhhheeEEEECCeEeeCHHHHHHHHhcCCC
Q psy1512 99 YYWSMIVSLAFLYNFWVIIYRFAFQEINRESLVIWFCLDYMADLMYVIDILIHFRTGYLEDGVLQTDSTKLRDHYMNSTT 178 (679)
Q Consensus 99 ~~W~~i~~~~~~~~~~~ip~~~~F~~~~~~~~~~~~~~~~i~d~~f~~Di~l~f~t~y~~~g~~v~d~~~I~~~Ylks~~ 178 (679)
..||.+++++++++.+.+++..... .+.+....|..+|.+++++|.+|+++||.++. .+++|+|+
T Consensus 8 ~~f~~~i~~lil~~~~~~~~~~~~~-~~~~~~~~l~~~d~~~~~iF~~e~~lr~~~~~------------~~~~y~~~-- 72 (223)
T 1orq_C 8 PLVELGVSYAALLSVIVVVVECTMQ-LSGEYLVRLYLVDLILVIILWADYAYRAYKSG------------DPAGYVKK-- 72 (223)
T ss_dssp HHHHTHHHHHHHHHHHHHHHHHHHH-HTTCTTTHHHHHHHHHHHHHHHHHHHHHHTTS------------CHHHHHHH--
T ss_pred chHHHHHHHHHHHHHHHHHHHHhcc-cChhhhhHHHHHHHHHHHHHHHHHHHHHcccc------------cHHHHHHH--
Confidence 3599999999999998877764332 22234455678999999999999999999872 25899985
Q ss_pred ceehhhhccchHHHHHh-hhh--HHHHHHHHHHHHHHHHHHHHhhhhhc-cchh---HHHHHHHHHHHHHHHHHHHHHHH
Q psy1512 179 FYIDCLCLLPLDFLYLS-IGF--NSILRLFRLVKIYRFWAFMDRTERHT-NYPN---LFRSSSLIHYLLVIFHWNGCLYH 251 (679)
Q Consensus 179 f~~Dlls~lP~~~~~~~-~~~--~~~lrl~rllrl~rl~~~~~~~~~~~-~~~~---~~~~~~l~~~~l~~~H~~aCl~~ 251 (679)
+++|+++++|++..... .+. ...+|++|++|+.|+.+..+...+.. .... ..++..++..++++.|+.||+++
T Consensus 73 ~iiDllailP~~~~~~~~~~~~~~~~lr~lRllRllR~~r~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 152 (223)
T 1orq_C 73 TLYEIPALVPAGLLALIEGHLAGLGLFRLVRLLRFLRILLIISRGSKFLSAIADAADKIRFYHLFGAVMLTVLYGAFAIY 152 (223)
T ss_dssp HHHHCTTHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 89999999999876531 111 22455555555555555544222110 0111 12345566777888899999998
Q ss_pred HHHhcCCCCCCCcccCCCCCchhhhhhHHHHHHHHHHhhccc--CCcCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1512 252 IIYKNDGFGSRNWVYGDSDTTDVVKQYLQSYYWCTLALTTIG--DLPRPRSKGEYFFVIVQLLFGLLLFATVLGHVANIV 329 (679)
Q Consensus 252 ~i~~~~~~~~~~Wi~~~~~~~~~~~~Y~~slywa~~tlttvG--di~~p~t~~e~i~~i~~~i~G~~~~a~~ig~i~~ii 329 (679)
.+.... + ++.+.+|.+|+||+++||||+| |+ .|.|..|++++++.|++|++++|+++|.+++.+
T Consensus 153 ~~e~~~---~----------~~~~~~~~~s~y~~~~t~tTvGyGdi-~P~t~~~~~~~~~~~~~G~~~~~~~i~~i~~~~ 218 (223)
T 1orq_C 153 IVEYPD---P----------NSSIKSVFDALWWAVVTATTVGYGDV-VPATPIGKVIGIAVMLTGISALTLLIGTVSNMF 218 (223)
T ss_dssp HTTSSS---T----------TCSCCSHHHHHHHHHHHHTTCCCCSS-CCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhCC---c----------CCCcCcchhHHHhHHhHHhccCCCCC-CCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 764321 1 1224589999999999999998 88 699999999999999999999999999999988
Q ss_pred HH
Q psy1512 330 TS 331 (679)
Q Consensus 330 ~~ 331 (679)
++
T Consensus 219 ~~ 220 (223)
T 1orq_C 219 QK 220 (223)
T ss_dssp HH
T ss_pred HH
Confidence 75
No 6
>3shr_A CGMP-dependent protein kinase 1; cyclic nucleotide binding domains, cyclic nucleotide protein transferase, PKG; HET: CMP; 2.50A {Bos taurus}
Probab=99.86 E-value=5.2e-23 Score=214.07 Aligned_cols=210 Identities=16% Similarity=0.200 Sum_probs=166.8
Q ss_pred CcccCcchHHHHHHHhhhhhhccccccccCChhHHHHHHHhccceEeCCCCEEEEeCCeeeeEEEEeeeeEEEEEehhhH
Q psy1512 433 PKVVPDKLKAEIAINVHLDTLKRVEIFQNTEAGFLCELVLRLRPVLFSPGDYICRKGNRRTASVRSVGYSDLFVLSKTDM 512 (679)
Q Consensus 433 ~~~l~~~Lr~ei~~~~~~~~l~~i~lF~~~~~~~l~~L~~~l~~~~~~pge~I~~~Gd~r~asv~a~~~~~ly~I~~g~~ 512 (679)
...+|+..|.+...+...++++++++|++++++.+..|+..++.+.|.+|++|+++||+ ++.+|+|.+|.+
T Consensus 21 ~~~~p~~~rs~~~~~~i~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~---------~~~~yiI~~G~v 91 (299)
T 3shr_A 21 MQAFRKFTKSERSKDLIKEAILDNDFMKNLELSQIQEIVDCMYPVEYGKDSCIIKEGDV---------GSLVYVMEDGKV 91 (299)
T ss_dssp -CCCCCCCCCHHHHHHHHHHHHTCTTTTTSCHHHHHHHHHHCEEEEECTTCEEECTTCB---------CCCEEEEEESCE
T ss_pred cCCCCCcCCCHHHHHHHHHHHhhCHHHHcCCHHHHHHHHHhcCeEEECCCCEEEcCCCc---------CceEEEEEEEEE
Confidence 34569999999999999999999999999999999999999999999999999999998 789999988866
Q ss_pred HHHHhhChhHHHHHHHHHHHHHhhhccCcccCCCCCCCCCCCCcccccccccccceeecccchhHHHhhcChhHhhhhHH
Q psy1512 513 WDVLKEYPAARVRLESIAVKRLQKYKRTPLEKGISPSPFPGNRRTASVRSVGYSDLFVLSKTDMWDVLKEYPAARVRLES 592 (679)
Q Consensus 513 ~~vl~~~p~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~r~atv~A~~~~~l~~L~r~~f~~il~~~P~~~~~l~~ 592 (679)
.... .+ ... .....|+..+..+++.+.||++|++|.++|+++.|++++|.+++.++|........
T Consensus 92 ~v~~------~g--------~~~-~~~~~G~~fGe~~ll~~~~~~~tv~a~~~~~l~~i~~~~~~~i~~~~~~~~~~~~~ 156 (299)
T 3shr_A 92 EVTK------EG--------VKL-CTMGPGKVFGELAILYNCTRTATVKTLVNVKLWAIDRQCFQTIMMRTGLIKHTEYM 156 (299)
T ss_dssp EEEE------TT--------EEE-EEECTTCEESCSGGGTTTBCCSEEEESSCEEEEEECHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEE------CC--------EEE-EEeCCCCeeeHhHHhcCCCCCcEEEEcCCeEEEEEcHHHHHHHhhHhHHHHHHHHH
Confidence 4311 00 001 11223343334477889999999999999999999999999999999876554333
Q ss_pred HHHH--------------------HhhhcCC--CceecCCCCceEEEEEeeEEEEEecC----CceEeEEcCCCCeeeee
Q psy1512 593 IAVK--------------------RLQKYKR--TPLEKGEVGKEMYIVNRGRLQVVADN----GKTVLATLRAGSYFGEI 646 (679)
Q Consensus 593 ~~~~--------------------rl~~~~~--~ii~~Ge~g~~~yiI~~G~v~v~~~~----~~~~i~~L~~G~~FGE~ 646 (679)
...+ +.+.+.. .|+++|+.++.+|+|.+|+|++.... ....+..+++|++|||.
T Consensus 157 ~~l~~~~~f~~l~~~~l~~l~~~~~~~~~~~g~~I~~~G~~~~~~yiI~~G~v~~~~~~~~~g~~~~~~~l~~G~~fGe~ 236 (299)
T 3shr_A 157 EFLKSVPTFQSLPEEILSKLADVLEETHYENGEYIIRQGARGDTFFIISKGKVNVTREDSPNEDPVFLRTLGKGDWFGEK 236 (299)
T ss_dssp HHHTTSHHHHHSCHHHHHHHTTTCEEEEECTTCEEECTTCEECEEEEEEESEEEEEECCSSSCCCEEEEEEETTCEECGG
T ss_pred HHHhhCHHhhhCCHHHHHHHHHhccEEEECCCCEEEeCCCCCCEEEEEEeeEEEEEEecCCCCcceEEEEcCCCCEeChH
Confidence 3222 1122222 78999999999999999999998643 34578999999999999
Q ss_pred ccccCC--ceEEEEeeeeeeee
Q psy1512 647 SILNMG--TAGTNLIQECEDHI 666 (679)
Q Consensus 647 all~~~--~~t~~a~~~~~~~~ 666 (679)
+++.+. .+||+|.++|+-..
T Consensus 237 ~ll~~~~~~~tv~a~~~~~l~~ 258 (299)
T 3shr_A 237 ALQGEDVRTANVIAAEAVTCLV 258 (299)
T ss_dssp GGSSSEECSSEEEESSSEEEEE
T ss_pred HHhCCCCcceEEEECCCEEEEE
Confidence 999987 88888887766444
No 7
>2r9r_B Paddle chimera voltage gated potassium channel KV; voltage sensor, voltage dependent, ION CH shaker, membrane protein, eukaryotic; HET: NAP PGW; 2.40A {Rattus norvegicus} PDB: 3lnm_B* 3lut_B* 2a79_B*
Probab=99.84 E-value=1.3e-21 Score=216.79 Aligned_cols=282 Identities=11% Similarity=0.188 Sum_probs=182.9
Q ss_pred ecccCCCCCCCCCCCCCCCCCCChhhhhhccCCCcccccccccccCCCccchhhhhhhhccCCCCCC-CCceEE-cCC-C
Q psy1512 19 NISSTPSEFDLPKAGGICRSRRDSHVRQAKLAPLTSNLTQDKCFHGNTGADCAVHRVAERYPRSSGP-NLTFVF-DPA-G 95 (679)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~vi-~P~-s 95 (679)
++|+++|+...|. ..+.+...+|+.+..+.+....+....++...+. .+..|....+ +.+.++ +|+ |
T Consensus 109 ~~~r~~g~l~~p~-----~~~~~~~~~E~~f~~i~~~~~~~~~~~e~~~~~~-----~~~~p~~~~r~~lw~l~e~p~sS 178 (514)
T 2r9r_B 109 YYYQSGGRLRRPV-----NVPLDIFSEEIRFYELGEEAMEMFREDEGYIKEE-----ERPLPENEFQRQVWLLFEYPESS 178 (514)
T ss_dssp HHHHHTSCCCCCT-----TSCHHHHHHHHHHTTCCHHHHHHHHHHTTCCCCC-----CCCCCSCSSHHHHHHTTTCTTSC
T ss_pred HHHhcCCccccCC-----cccHHHHHHHHHhcCCCHHHHhhhhhhhhccccc-----cccCchHHHHHHHHHHhcCCCCc
Confidence 6777777777777 3445678888888888765533211111111100 1112221111 122233 365 5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhh--ccccc-----------------------ccchhhHHHHHHHHHHHHHHHHHh
Q psy1512 96 RFSYYWSMIVSLAFLYNFWVIIYRFA--FQEIN-----------------------RESLVIWFCLDYMADLMYVIDILI 150 (679)
Q Consensus 96 ~~~~~W~~i~~~~~~~~~~~ip~~~~--F~~~~-----------------------~~~~~~~~~~~~i~d~~f~~Di~l 150 (679)
....+|+.+++++++.++++..+... +.... ......|..+|.++.++|.+|+++
T Consensus 179 ~~a~~f~~~~i~~Illsii~~~leT~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ie~i~~~iFtiE~il 258 (514)
T 2r9r_B 179 GPARIIAIVSVMVILISIVSFCLETLPIFRDENEDMHGGGVTFHTYSQSTIGYQQSTSFTDPFFIVETLCIIWFSFEFLV 258 (514)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTCHHHHTCSTTTTSCCCCHHHHHHHHHSSCCCTTCCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhccccccccccccccccccccccccccccccccchhhhHHHHHHHHHHHHHHHHHHH
Confidence 67889999999999999888766421 11110 012345678999999999999999
Q ss_pred hheeEEEECCeEeeCHHHHHHHHhcCCCceehhhhccchHHHHHhh-----h-----hHHHHHHHHHHHHHHHHHHHHhh
Q psy1512 151 HFRTGYLEDGVLQTDSTKLRDHYMNSTTFYIDCLCLLPLDFLYLSI-----G-----FNSILRLFRLVKIYRFWAFMDRT 220 (679)
Q Consensus 151 ~f~t~y~~~g~~v~d~~~I~~~Ylks~~f~~Dlls~lP~~~~~~~~-----~-----~~~~lrl~rllrl~rl~~~~~~~ 220 (679)
++.++. .+++|+|++|+++|+++++|+.+..... + ....+|++|++|++|++++.+..
T Consensus 259 R~~~~~------------~k~~Y~ks~wniiDli~iip~~i~l~~~~~~~~~~~~~~~~~~lrvlRllRvlRilkL~r~~ 326 (514)
T 2r9r_B 259 RFFACP------------SKAGFFTNIMNIIDIVAIIPYYVTIFLTESNKSVLQFQNVRRVVQIFRIMRILRIFKLSRHS 326 (514)
T ss_dssp HHHHSS------------CSSSSTTSHHHHHHHHTTHHHHHHHHHHHTSCSHHHHHTTHHHHHHHHHHGGGGGGGGGGSC
T ss_pred HHHhCC------------cHHHHHhchhHHHHHHHHHHHHHHHHhhhccccchhhhhHHHHHHHHHHHHHHHHHHHhhhh
Confidence 998761 1358999989999999999987654431 0 12345666666666655554432
Q ss_pred hhhccch-----hHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCcccCCCCCchhhhhhHHHHHHHHHHhhccc--
Q psy1512 221 ERHTNYP-----NLFRSSSLIHYLLVIFHWNGCLYHIIYKNDGFGSRNWVYGDSDTTDVVKQYLQSYYWCTLALTTIG-- 293 (679)
Q Consensus 221 ~~~~~~~-----~~~~~~~l~~~~l~~~H~~aCl~~~i~~~~~~~~~~Wi~~~~~~~~~~~~Y~~slywa~~tlttvG-- 293 (679)
....... ..-.+..+++++++.++++||++|++.... ..+.+..|..|+||+++||||+|
T Consensus 327 ~~l~~l~~tl~~s~~~l~~ll~~l~i~~~if~~~~~~~e~~~-------------~~~~F~s~~~a~y~~~vT~TTvGYG 393 (514)
T 2r9r_B 327 KGLQILGQTLKASMRELGLLIFFLFIGVILFSSAVYFAEADE-------------RDSQFPSIPDAFWWAVVSMTTVGYG 393 (514)
T ss_dssp HHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHTTC-------------TTCSCSSHHHHHHHHHHHHTTCCCS
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhheeeccC-------------CCccccchhhhhheeeeEEEecccC
Confidence 2211111 111233445555666778888777653211 12335689999999999999997
Q ss_pred CCcCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1512 294 DLPRPRSKGEYFFVIVQLLFGLLLFATVLGHVANIVTSVSAAR 336 (679)
Q Consensus 294 di~~p~t~~e~i~~i~~~i~G~~~~a~~ig~i~~ii~~~~~~~ 336 (679)
|+ .|.|..++++++++|++|++++++++|.+.+.++....++
T Consensus 394 Di-~P~t~~gr~f~~~~~l~G~~~l~l~iavI~~~f~~~~~~~ 435 (514)
T 2r9r_B 394 DM-VPTTIGGKIVGSLCAIAGVLTIALPVPVIVSNFNYFYHRE 435 (514)
T ss_dssp SS-CCCSHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred CC-CCCCcchHhhehhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88 6999999999999999999999999999999887766543
No 8
>3of1_A CAMP-dependent protein kinase regulatory subunit; cyclic nucleotide binding domain, evolution, PKA signaling, transfer; HET: CMP; 2.21A {Saccharomyces cerevisiae}
Probab=99.83 E-value=4.5e-22 Score=200.33 Aligned_cols=193 Identities=16% Similarity=0.194 Sum_probs=151.7
Q ss_pred hhhhhccccccccCChhHHHHHHHhccceEeCCCCEEEEeCCeeeeEEEEeeeeEEEEEehhhHHHHHhhChhHHHHHHH
Q psy1512 449 HLDTLKRVEIFQNTEAGFLCELVLRLRPVLFSPGDYICRKGNRRTASVRSVGYSDLFVLSKTDMWDVLKEYPAARVRLES 528 (679)
Q Consensus 449 ~~~~l~~i~lF~~~~~~~l~~L~~~l~~~~~~pge~I~~~Gd~r~asv~a~~~~~ly~I~~g~~~~vl~~~p~~~~~~~~ 528 (679)
..++|+++|+|++++++.+..++..++.+.|.+|++|+++||+ .+.+|+|.+|.+.....
T Consensus 5 i~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~---------~~~~y~i~~G~v~v~~~----------- 64 (246)
T 3of1_A 5 LEKSIRNNFLFNKLDSDSKRLVINCLEEKSVPKGATIIKQGDQ---------GDYFYVVEKGTVDFYVN----------- 64 (246)
T ss_dssp HHHHHHTCTTTTTSCHHHHHHHHTTCEEEEECTTCEEECTTCC---------CCEEEEEEECCEEEEST-----------
T ss_pred HHHHHhcCHhhHhCCHHHHHHHHHhhceEEECCCCEEEecCCC---------CCEEEEEEeeEEEEEEC-----------
Confidence 3568899999999999999999999999999999999999998 78999998886643211
Q ss_pred HHHHHHhhhccCcccCCCCCCCCCCCCcccccccccccceeecccchhHHHhhcChhHhhhhHHHHHHH-----------
Q psy1512 529 IAVKRLQKYKRTPLEKGISPSPFPGNRRTASVRSVGYSDLFVLSKTDMWDVLKEYPAARVRLESIAVKR----------- 597 (679)
Q Consensus 529 ~~~~~~~~~~~~~~~~g~~~~~~~~~~r~atv~A~~~~~l~~L~r~~f~~il~~~P~~~~~l~~~~~~r----------- 597 (679)
+... .....|+..+..+++.+.||+++++|.++|+++.|++++|.+++.++|.....+.....++
T Consensus 65 ---~~~~-~~~~~g~~fGe~~l~~~~~~~~tv~a~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~f~~l~~~~ 140 (246)
T 3of1_A 65 ---DNKV-NSSGPGSSFGELALMYNSPRAATVVATSDCLLWALDRLTFRKILLGSSFKKRLMYDDLLKSMPVLKSLTTYD 140 (246)
T ss_dssp ---TSCC-EEECTTCEECHHHHHHTCCCSSEEEESSCEEEEEEEHHHHHHTTTTTTSHHHHHSHHHHHHCGGGTTCCHHH
T ss_pred ---CEEE-EecCCCCeeehhHHhcCCCCCcEEEECCCeEEEEEEhHHHHHHHHHhHHHHHHHHHHHHhhChhhhcCCHHH
Confidence 0000 1112223222235567899999999999999999999999999999997766554444331
Q ss_pred ---------hh--hcCCCceecCCCCceEEEEEeeEEEEEecCCceEeEEcCCCCeeeeeccccCC--ceEEEEeeeeee
Q psy1512 598 ---------LQ--KYKRTPLEKGEVGKEMYIVNRGRLQVVADNGKTVLATLRAGSYFGEISILNMG--TAGTNLIQECED 664 (679)
Q Consensus 598 ---------l~--~~~~~ii~~Ge~g~~~yiI~~G~v~v~~~~~~~~i~~L~~G~~FGE~all~~~--~~t~~a~~~~~~ 664 (679)
.+ ..+..++++|+.++.+|+|.+|+|++...+.. .+..+++|++|||.+++.+. .+||+|.++|+-
T Consensus 141 l~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~I~~G~v~v~~~~~~-~~~~l~~g~~fGe~~~~~~~~~~~~v~a~~~~~~ 219 (246)
T 3of1_A 141 RAKLADALDTKIYQPGETIIREGDQGENFYLIEYGAVDVSKKGQG-VINKLKDHDYFGEVALLNDLPRQATVTATKRTKV 219 (246)
T ss_dssp HHHHHHTCEEEEECTTCEEECTTSBCCEEEEEEECEEEEEETTTE-EEEEEETTCEECHHHHHHTCBCSSEEEESSCEEE
T ss_pred HHHHHHhhheEEeCCCCEEEeCCCcCCEEEEEEecEEEEEEcCCc-eEEEcCCCCcccHHHHhCCCCcccEEEECCCEEE
Confidence 11 12227899999999999999999999986544 78999999999999999877 888888876654
Q ss_pred ee
Q psy1512 665 HI 666 (679)
Q Consensus 665 ~~ 666 (679)
..
T Consensus 220 ~~ 221 (246)
T 3of1_A 220 AT 221 (246)
T ss_dssp EE
T ss_pred EE
Confidence 43
No 9
>2qcs_B CAMP-dependent protein kinase type I-alpha regula subunit, CAMP-dependent protein kinase, alpha-catalytic SU; cyclic adenosine monophosphate; HET: SEP TPO ANP TAM; 2.20A {Bos taurus} PDB: 1rl3_A* 1rgs_A* 1ne6_A* 1ne4_A*
Probab=99.83 E-value=8.8e-21 Score=196.27 Aligned_cols=201 Identities=14% Similarity=0.205 Sum_probs=157.4
Q ss_pred HHHHHHhhhhhhccccccccCChhHHHHHHHhccceEeCCCCEEEEeCCeeeeEEEEeeeeEEEEEehhhHHHHHhhChh
Q psy1512 442 AEIAINVHLDTLKRVEIFQNTEAGFLCELVLRLRPVLFSPGDYICRKGNRRTASVRSVGYSDLFVLSKTDMWDVLKEYPA 521 (679)
Q Consensus 442 ~ei~~~~~~~~l~~i~lF~~~~~~~l~~L~~~l~~~~~~pge~I~~~Gd~r~asv~a~~~~~ly~I~~g~~~~vl~~~p~ 521 (679)
.+-..+...+.|+++|+|++++++.+..++..++.+.|.+|++|+++||+ .+.+|+|.+|.+....+
T Consensus 30 s~~~~~~i~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~---------~~~~y~i~~G~v~~~~~---- 96 (291)
T 2qcs_B 30 DYKTMAALAKAIEKNVLFSHLDDNERSDIFDAMFPVSFIAGETVIQQGDE---------GDNFYVIDQGEMDVYVN---- 96 (291)
T ss_dssp CHHHHHHHHHHTTTCHHHHTSCHHHHHHHHHHCEEEEECTTCEEECTTSB---------CCEEEEEEECCEEEEET----
T ss_pred CHHHHHHHHHHHhcChhhhhCCHHHHHHHHHhccEEEECCCCEEEeCCCC---------CceEEEEeeeEEEEEEC----
Confidence 33345566889999999999999999999999999999999999999998 78899998886543220
Q ss_pred HHHHHHHHHHHHHhhhccCcccCCCCCCCCCCCCcccccccccccceeecccchhHHHhhcChhHhhhhHHHHHHHh---
Q psy1512 522 ARVRLESIAVKRLQKYKRTPLEKGISPSPFPGNRRTASVRSVGYSDLFVLSKTDMWDVLKEYPAARVRLESIAVKRL--- 598 (679)
Q Consensus 522 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~r~atv~A~~~~~l~~L~r~~f~~il~~~P~~~~~l~~~~~~rl--- 598 (679)
| . .......|+..+..+++.+.||.++++|.++|+++.|++++|.+++.++|.....+.....++.
T Consensus 97 --g--------~-~~~~l~~G~~fGe~~l~~~~~~~~tv~a~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~lf 165 (291)
T 2qcs_B 97 --N--------E-WATSVGEGGSFGELALIYGTPRAATVKAKTNVKLWGIDRDSYRRILMGSTLRKRKMYEEFLSKVSIL 165 (291)
T ss_dssp --T--------E-EEEEECTTCEECGGGGTCCCBCSSEEEESSCEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHTCGGG
T ss_pred --C--------e-EEEEcCCCCccchHHHhcCCCCceEEEECCCEEEEEEEhHHHHHHHhhhHHHHHHHHHHHHhhchHh
Confidence 0 0 0111223333333567789999999999999999999999999999999988776655544411
Q ss_pred -----------------hhc--CCCceecCCCCceEEEEEeeEEEEEec--CC--ceEeEEcCCCCeeeeeccccCC--c
Q psy1512 599 -----------------QKY--KRTPLEKGEVGKEMYIVNRGRLQVVAD--NG--KTVLATLRAGSYFGEISILNMG--T 653 (679)
Q Consensus 599 -----------------~~~--~~~ii~~Ge~g~~~yiI~~G~v~v~~~--~~--~~~i~~L~~G~~FGE~all~~~--~ 653 (679)
+.+ +..++++|+.++.+|+|.+|+|++... ++ ...+..|++|++|||.+++.+. .
T Consensus 166 ~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~~~~~~~~~~l~~G~~fGe~~ll~~~~~~ 245 (291)
T 2qcs_B 166 ESLDKWERLTVADALEPVQFEDGQKIVVQGEPGDEFFIILEGSAAVLQRRSENEEFVEVGRLGPSDYFGEIALLMNRPKA 245 (291)
T ss_dssp TTCCHHHHHHHHHHCEEEEECTTCEEECTTSCCCEEEEEEEEEEEEEEECSTTSCEEEEEEECTTCEECSGGGTCCCCCS
T ss_pred hhCCHHHHHHHHhhcEEEEECCCCEEEeCCccCCEEEEEEeCEEEEEEecCCCCccEEEEEeCCCCEecHHHHcCCCCcc
Confidence 112 227799999999999999999999852 22 3579999999999999999988 7
Q ss_pred eEEEEeeeeeeee
Q psy1512 654 AGTNLIQECEDHI 666 (679)
Q Consensus 654 ~t~~a~~~~~~~~ 666 (679)
+||+|.++|+-..
T Consensus 246 ~tv~a~~~~~~~~ 258 (291)
T 2qcs_B 246 ATVVARGPLKCVK 258 (291)
T ss_dssp SEEEEEEEEEEEE
T ss_pred eEEEECCcEEEEE
Confidence 8888887765433
No 10
>4din_B CAMP-dependent protein kinase type I-beta regulat subunit, CAMP-dependent protein kinase catalytic subunit A; isoform diversity; HET: TPO SEP ATP; 3.70A {Homo sapiens}
Probab=99.82 E-value=1.6e-21 Score=209.95 Aligned_cols=199 Identities=14% Similarity=0.210 Sum_probs=157.1
Q ss_pred HHHHHhhhhhhccccccccCChhHHHHHHHhccceEeCCCCEEEEeCCeeeeEEEEeeeeEEEEEehhhHHHHHhhChhH
Q psy1512 443 EIAINVHLDTLKRVEIFQNTEAGFLCELVLRLRPVLFSPGDYICRKGNRRTASVRSVGYSDLFVLSKTDMWDVLKEYPAA 522 (679)
Q Consensus 443 ei~~~~~~~~l~~i~lF~~~~~~~l~~L~~~l~~~~~~pge~I~~~Gd~r~asv~a~~~~~ly~I~~g~~~~vl~~~p~~ 522 (679)
+-.++...+.|+++++|++++++.+..++..++.+.|.+|++|+++||+ ++.+|+|.+|.+.....
T Consensus 122 ~~~~~~i~~~l~~~~lF~~L~~~~l~~l~~~~~~~~~~~ge~I~~~Gd~---------~~~~yiI~~G~v~v~~~----- 187 (381)
T 4din_B 122 YKTMTALAKAISKNVLFAHLDDNERSDIFDAMFPVTHIAGETVIQQGNE---------GDNFYVVDQGEVDVYVN----- 187 (381)
T ss_dssp HHHHHHHHHHHTTCTTSSSCCHHHHHHHHHHCEEEECCTTCBSSCTTSB---------CCEEEECSSSEEEEEET-----
T ss_pred HHHHHHHHHHHhCChhhhcCCHHHHHHHHHhceEEEECCCCEEEeCCCC---------CCeEEEEEeeEEEEEEC-----
Confidence 3344556789999999999999999999999999999999999999998 78999998886543211
Q ss_pred HHHHHHHHHHHHhhhccCcccCCCCCCCCCCCCcccccccccccceeecccchhHHHhhcChhHhhhhHHHHHHHh----
Q psy1512 523 RVRLESIAVKRLQKYKRTPLEKGISPSPFPGNRRTASVRSVGYSDLFVLSKTDMWDVLKEYPAARVRLESIAVKRL---- 598 (679)
Q Consensus 523 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~r~atv~A~~~~~l~~L~r~~f~~il~~~P~~~~~l~~~~~~rl---- 598 (679)
+... .....|...+..+++.+.||.+|++|.++|++|.|++++|.+++.++|.....+.....++.
T Consensus 188 ---------~~~v-~~l~~G~~fGe~all~~~~r~atv~A~~~~~l~~i~~~~f~~ll~~~~~~~~~~~~~~L~~v~~f~ 257 (381)
T 4din_B 188 ---------GEWV-TNISEGGSFGELALIYGTPRAATVKAKTDLKLWGIDRDSYRRILMGSTLRKRKMYEEFLSKVSILE 257 (381)
T ss_dssp ---------TEEE-EEEESSCCBCGGGGTSCCBCSSEEEESSSCEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHCSTTT
T ss_pred ---------CeEe-eeCCCCCEEEchHHhcCCCcceEEEECCCEEEEEEchHHHHHhhhhhhHHHHHHHHHHhhhhHHHH
Confidence 0001 11223333334477889999999999999999999999999999999998876665544411
Q ss_pred ----------------hhcCC--CceecCCCCceEEEEEeeEEEEEecC--C--ceEeEEcCCCCeeeeeccccCC--ce
Q psy1512 599 ----------------QKYKR--TPLEKGEVGKEMYIVNRGRLQVVADN--G--KTVLATLRAGSYFGEISILNMG--TA 654 (679)
Q Consensus 599 ----------------~~~~~--~ii~~Ge~g~~~yiI~~G~v~v~~~~--~--~~~i~~L~~G~~FGE~all~~~--~~ 654 (679)
+.+.. .|+++|+.++.+|||.+|+|+|.... + ...+..|++|++|||.+++.+. .+
T Consensus 258 ~Ls~~el~~l~~~~~~~~~~~ge~I~~eGd~~~~~yiI~~G~v~v~~~~~~~~~~~~v~~l~~Gd~fGe~all~~~~r~~ 337 (381)
T 4din_B 258 SLEKWERLTVADALEPVQFEDGEKIVVQGEPGDDFYIITEGTASVLQRRSPNEEYVEVGRLGPSDYFGEIALLLNRPRAA 337 (381)
T ss_dssp TCCTTHHHHHHTTCBCCCBCSSCBSSCTTSBCCEEEEEEESCEEEECCSSSSSCCCEEEEECTTCEECTTGGGSCCBCSS
T ss_pred hccHHHHHHHHHhhhhccCCCCCEEEeCCCcCCEEEEEEeCEEEEEEecCCCCceEEEEEeCCCCEechHHHhCCCCcee
Confidence 11222 78999999999999999999998632 2 3468999999999999999988 88
Q ss_pred EEEEeeeeeee
Q psy1512 655 GTNLIQECEDH 665 (679)
Q Consensus 655 t~~a~~~~~~~ 665 (679)
||+|.++|+-.
T Consensus 338 tv~A~~~~~ll 348 (381)
T 4din_B 338 TVVARGPLKCV 348 (381)
T ss_dssp EEEESSCBEEE
T ss_pred EEEEcCCEEEE
Confidence 88888766533
No 11
>3tnp_B CAMP-dependent protein kinase type II-beta regula subunit; PKA RIIB tetrameric holoenzyme, transferase; HET: SEP TPO; 2.30A {Mus musculus} PDB: 3tnq_A* 1cx4_A* 2qvs_B*
Probab=99.81 E-value=3.9e-21 Score=209.05 Aligned_cols=206 Identities=15% Similarity=0.232 Sum_probs=155.0
Q ss_pred HHHHHHHhhhhhhccccccccCChhHHHHHHHhccceEeCCCCEEEEeCCeeeeEEEEeeeeEEEEEehhhHHHHHhhCh
Q psy1512 441 KAEIAINVHLDTLKRVEIFQNTEAGFLCELVLRLRPVLFSPGDYICRKGNRRTASVRSVGYSDLFVLSKTDMWDVLKEYP 520 (679)
Q Consensus 441 r~ei~~~~~~~~l~~i~lF~~~~~~~l~~L~~~l~~~~~~pge~I~~~Gd~r~asv~a~~~~~ly~I~~g~~~~vl~~~p 520 (679)
|.+-..+...+.|+++++|++++++.+..|+..++.+.|.+|++|+++||+ ++.+|+|.+|.+......
T Consensus 135 ks~~~~~~i~~~L~~~~lF~~L~~~~l~~l~~~~~~~~~~~Ge~I~~qGd~---------~d~~YiI~sG~v~v~~~~-- 203 (416)
T 3tnp_B 135 KTDDQRNRLQEACKDILLFKNLDPEQMSQVLDAMFEKLVKEGEHVIDQGDD---------GDNFYVIDRGTFDIYVKC-- 203 (416)
T ss_dssp CCHHHHHHHHHHHTTSHHHHTCCHHHHHHHHHHCEEEEECTTCEEECTTSC---------CCEEEEEEECEEEEEEEC--
T ss_pred CCHHHHHHHHHHHhCCHhHhcCCHHHHHHHHHhcEEEEeCCCCEEEeCCCC---------CceEEEEEeeEEEEEEec--
Confidence 344456667889999999999999999999999999999999999999998 789999988865432210
Q ss_pred hHHHHHHHHHHHHHhhhccCcccCCCCCCCCCCCCcccccccccccceeecccchhHHHhhcChhHhhhhHHH-------
Q psy1512 521 AARVRLESIAVKRLQKYKRTPLEKGISPSPFPGNRRTASVRSVGYSDLFVLSKTDMWDVLKEYPAARVRLESI------- 593 (679)
Q Consensus 521 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~r~atv~A~~~~~l~~L~r~~f~~il~~~P~~~~~l~~~------- 593 (679)
.|. .. .-.....|...+..+++.+.||.+|++|.++|++|.|++++|.+++.++|.....+...
T Consensus 204 --~G~------~~-~v~~l~~G~~fGe~all~~~pr~atv~A~~d~~l~~i~r~~f~~ll~~~~~~~~~~~~~~L~~v~l 274 (416)
T 3tnp_B 204 --DGV------GR-CVGNYDNRGSFGELALMYNTPKAATITATSPGALWGLDRVTFRRIIVKNNAKKRKMYESFIESLPF 274 (416)
T ss_dssp --SSC------EE-EEEEEESCCEECGGGGTSCCCCSSEEEESSSEEEEEEEHHHHHHHHHHHHHHHSSSSSSSGGGCGG
T ss_pred --CCC------EE-EEEEecCCCEEeeHHHhcCCCcccEEEEccCeEEEEEeehhhhhhhhcchhHHHHHHHHHHhhchH
Confidence 000 00 00112233333344778899999999999999999999999999999988775432211
Q ss_pred -----------HHHH--hhhc--CCCceecCCCCceEEEEEeeEEEEEec---------CCceEeEEcCCCCeeeeeccc
Q psy1512 594 -----------AVKR--LQKY--KRTPLEKGEVGKEMYIVNRGRLQVVAD---------NGKTVLATLRAGSYFGEISIL 649 (679)
Q Consensus 594 -----------~~~r--l~~~--~~~ii~~Ge~g~~~yiI~~G~v~v~~~---------~~~~~i~~L~~G~~FGE~all 649 (679)
+... .+.+ +..|+++|+.++.+|||.+|+|+|... +....+..|++|++|||.+++
T Consensus 275 f~~Ls~~el~~L~~~l~~~~~~~Ge~I~~eGd~~~~~yiI~sG~v~v~~~~~~~~~~~~g~~~~l~~l~~G~~fGE~all 354 (416)
T 3tnp_B 275 LKSLEVSERLKVVDVIGTKVYNDGEQIIAQGDLADSFFIVESGEVKITMKRKGKSEVEENGAVEIARCFRGQYFGELALV 354 (416)
T ss_dssp GTTCCHHHHHHHHHHCEEEEECTTCEEECTTSCCCEEEEEEEEEEEEECC------------CEEEEECTTCEESGGGGT
T ss_pred hhcCCHHHHHHHHhhceEEEECCCCEEEeCCCcCCEEEEEEeCEEEEEEecCCcccccCCceeEEEEeCCCCEecHHHHh
Confidence 1111 1122 228899999999999999999999853 224578999999999999999
Q ss_pred cCC--ceEEEEeeeeeeee
Q psy1512 650 NMG--TAGTNLIQECEDHI 666 (679)
Q Consensus 650 ~~~--~~t~~a~~~~~~~~ 666 (679)
.+. .+||+|.++|+-..
T Consensus 355 ~~~~r~~tv~A~~~~~ll~ 373 (416)
T 3tnp_B 355 TNKPRAASAHAIGTVKCLA 373 (416)
T ss_dssp CCSCCSSEEEEEEEEEEEE
T ss_pred CCCCceeEEEEcCCeEEEE
Confidence 888 88999987765443
No 12
>4f7z_A RAP guanine nucleotide exchange factor 4; cyclic nucleotide, regulation, auto-IN CDC25 homology domain, exocytosis; 2.60A {Mus musculus} PDB: 2byv_E
Probab=99.78 E-value=3.7e-20 Score=223.26 Aligned_cols=132 Identities=14% Similarity=0.124 Sum_probs=100.6
Q ss_pred CcchHHHHHHHhhhhhhccccccccCChhHHHHHHHhccceEeCCCCEEEEeCCeeeeEEEEeeeeEEEEEehhhHHHHH
Q psy1512 437 PDKLKAEIAINVHLDTLKRVEIFQNTEAGFLCELVLRLRPVLFSPGDYICRKGNRRTASVRSVGYSDLFVLSKTDMWDVL 516 (679)
Q Consensus 437 ~~~Lr~ei~~~~~~~~l~~i~lF~~~~~~~l~~L~~~l~~~~~~pge~I~~~Gd~r~asv~a~~~~~ly~I~~g~~~~vl 516 (679)
+|.-|.+--.++..+.|+++++|+++++..+.+|+..|+.+.|.+||+||++||+ ++.+|+|.+|.+...+
T Consensus 28 ~p~~Rt~edl~~I~~~Lk~~~~f~~l~~~~l~~l~~~m~ye~~~~Ge~IfrqGd~---------gd~fYIIlsGsV~V~i 98 (999)
T 4f7z_A 28 RPLERSSEDVDIIFTRLKGVKAFEKFHPNLLRQICLCGYYENLEKGITLFRQGDI---------GTNWYAVLAGSLDVKV 98 (999)
T ss_dssp CSSSCCHHHHHHHHHHHTTCTTTTTCCHHHHHHHHHHCEEEEECTTCEEECTTSC---------CCEEEEEEESEEEEEE
T ss_pred CcccCCHHHHHHHHHHHhCCHhhhcCCHHHHHHHHhheEEEEECCCCEEEcCCCc---------CCEEEEEEeeEEEEEE
Confidence 5566766666777889999999999999999999999999999999999999999 7899999888765443
Q ss_pred hhChhHHHHHHHHHHHHHhhhccCcccCCCCCCCCCCCCcccccccccccceeecccchhHHHhhcChhH
Q psy1512 517 KEYPAARVRLESIAVKRLQKYKRTPLEKGISPSPFPGNRRTASVRSVGYSDLFVLSKTDMWDVLKEYPAA 586 (679)
Q Consensus 517 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~r~atv~A~~~~~l~~L~r~~f~~il~~~P~~ 586 (679)
.+.. ..+. +...+....+..+|. +++.+.||+|||+|.++|++|.|++++|..++++||+.
T Consensus 99 ~~~~-~~~~------~~~v~~l~~G~sFGE--all~n~pRtaTv~a~~~s~l~~l~r~~F~~i~~~~~e~ 159 (999)
T 4f7z_A 99 SETS-SHQD------AVTICTLGIGTAFGE--SILDNTPRHATIVTRESSELLRIEQEDFKALWEKYRQY 159 (999)
T ss_dssp CSSS-CTTS------CEEEEEEETTCEECG--GGGGTCCCSSEEEESSSEEEEEEEHHHHHHHHHHHHHH
T ss_pred ecCC-CCCC------ceeEEEecCCcchhh--hhccCCCcceEEEeccceEEEEEEHHHHHHHHHhChHH
Confidence 2110 0000 000011111222343 56789999999999999999999999999999877653
No 13
>1o7f_A CAMP-dependent RAP1 guanine-nucleotide exchange factor; EPAC2, CAMP-GEF2, campb binding doamin, regulation; 2.5A {Mus musculus} SCOP: a.4.5.31 b.82.3.2 b.82.3.2
Probab=99.71 E-value=2e-18 Score=191.05 Aligned_cols=131 Identities=12% Similarity=0.118 Sum_probs=101.9
Q ss_pred CcchHHHHHHHhhhhhhccccccccCChhHHHHHHHhccceEeCCCCEEEEeCCeeeeEEEEeeeeEEEEEehhhHHHHH
Q psy1512 437 PDKLKAEIAINVHLDTLKRVEIFQNTEAGFLCELVLRLRPVLFSPGDYICRKGNRRTASVRSVGYSDLFVLSKTDMWDVL 516 (679)
Q Consensus 437 ~~~Lr~ei~~~~~~~~l~~i~lF~~~~~~~l~~L~~~l~~~~~~pge~I~~~Gd~r~asv~a~~~~~ly~I~~g~~~~vl 516 (679)
|+..|.+...+...+.|+++++|++++++.+..++..++.+.|.+|++|+++||+ .+.+|+|.+|.+....
T Consensus 28 ~~~~rt~~~~~~i~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~Gd~---------~~~~y~i~~G~v~v~~ 98 (469)
T 1o7f_A 28 RPLERSSEDVDIIFTRLKGVKAFEKFHPNLLRQICLCGYYENLEKGITLFRQGDI---------GTNWYAVLAGSLDVKV 98 (469)
T ss_dssp CSTTCCHHHHHHHHHHHTTCTTTTTCCHHHHHHHHHHCEEEEECTTCEEECTTSB---------CCEEEEEEESCEEEEE
T ss_pred ChhhCCHHHHHHHHHHHhCCHhhhcCCHHHHHHHHHhceEEEECCCCEEEeCCCC---------CCcEEEEEeeEEEEEE
Confidence 8888988888899999999999999999999999999999999999999999998 7889999888654321
Q ss_pred hhChhHHHHHHHHHHHHHhhhccCcccCCCCCCCCCCCCcccccccccccceeecccchhHHHhhcChh
Q psy1512 517 KEYPAARVRLESIAVKRLQKYKRTPLEKGISPSPFPGNRRTASVRSVGYSDLFVLSKTDMWDVLKEYPA 585 (679)
Q Consensus 517 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~r~atv~A~~~~~l~~L~r~~f~~il~~~P~ 585 (679)
.. ++ |.- ....-.....|+..++.+ +.+.||+++++|.++|+++.|++++|.+++.++|+
T Consensus 99 ~~-~~--g~~-----~~~~~~~~~~G~~fGe~~-l~~~~~~~tv~A~~~~~l~~i~~~~~~~l~~~~p~ 158 (469)
T 1o7f_A 99 SE-TS--SHQ-----DAVTICTLGIGTAFGESI-LDNTPRHATIVTRESSELLRIEQEDFKALWEKYRQ 158 (469)
T ss_dssp CS-SS--CGG-----GCEEEEEECTTCEECGGG-GGTCBCSSEEEESSSEEEEEEEHHHHHHHHHHHGG
T ss_pred ec-CC--CCC-----cceEEEEccCCCCcchhh-hCCCCccceEEEccceeEEEEcHHHHHHHHHhCHH
Confidence 11 00 000 000001122233323345 78899999999999999999999999999988886
No 14
>2a9h_A Voltage-gated potassium channel; potassium channel, KCSA, structure, membrane protein, metal transport; HET: PCA; NMR {Streptomyces lividans} SCOP: f.14.1.1
Probab=99.57 E-value=6.4e-15 Score=136.00 Aligned_cols=131 Identities=14% Similarity=0.177 Sum_probs=67.3
Q ss_pred CceehhhhccchHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhhhhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q psy1512 178 TFYIDCLCLLPLDFLYLSIGFNSILRLFRLVKIYRFWAFMDRTERHTNYPNLFRSSSLIHYLLVIFHWNGCLYHIIYKND 257 (679)
Q Consensus 178 ~f~~Dlls~lP~~~~~~~~~~~~~lrl~rllrl~rl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~H~~aCl~~~i~~~~ 257 (679)
+-++|+++++|+ +|.+|++|++|++ +.+. . ....... ...+++.+++++-+.|+++|.+....
T Consensus 15 ~~~~dli~~lp~------------lr~lRllRi~ril-l~r~-~--~~l~~~~-~~~~~~~~~~~i~~~a~~~~~~E~~~ 77 (155)
T 2a9h_A 15 EGRGRLIKHMPP------------MLSGLLARLVKLL-LGRH-G--SALHWRA-AGAATVLLVIVLLAGSYLAVLAERGA 77 (155)
T ss_dssp -----------------------------------------------CCHHHH-HHHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred hhHHHHHHHHHH------------HHHHHHHHHHHHH-HHHH-H--HHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 678899999996 4666666666665 2221 1 1111111 11122223333445566666554221
Q ss_pred CCCCCCcccCCCCCchhhhhhHHHHHHHHHHhhccc--CCcCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1512 258 GFGSRNWVYGDSDTTDVVKQYLQSYYWCTLALTTIG--DLPRPRSKGEYFFVIVQLLFGLLLFATVLGHVANIVTSVSAA 335 (679)
Q Consensus 258 ~~~~~~Wi~~~~~~~~~~~~Y~~slywa~~tlttvG--di~~p~t~~e~i~~i~~~i~G~~~~a~~ig~i~~ii~~~~~~ 335 (679)
+.+.+..|.+|+||+++|+||+| |+ .|.|..+++++++.+++|++++|+++|.+++.+.+...+
T Consensus 78 -------------~~~~~~s~~~a~y~s~vTltTVGYGDi-~P~t~~gr~~~~~~~l~Gv~~~a~~~~~i~~~~~~~~~~ 143 (155)
T 2a9h_A 78 -------------PGAALISYPDALWWSVETATTVGYGDL-YPVTLWGRCVAVVVMVAGITSYGLVFAAVATWFVGREQE 143 (155)
T ss_dssp -------------SCSSTTSHHHHHHHHHHHHTTCCCSSS-CCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCC-
T ss_pred -------------CCCccCcccceeheeeeeeecccCCCC-CCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 12235679999999999999997 99 699999999999999999999999999999999887655
Q ss_pred HHHH
Q psy1512 336 RKEF 339 (679)
Q Consensus 336 ~~~~ 339 (679)
+++.
T Consensus 144 ~~~~ 147 (155)
T 2a9h_A 144 RRGH 147 (155)
T ss_dssp ----
T ss_pred HHHH
Confidence 4433
No 15
>4f8a_A Potassium voltage-gated channel subfamily H membe; probable regulatory domain of potassium channel, membrane PR transport protein; 2.20A {Mus musculus}
Probab=99.46 E-value=2.2e-14 Score=133.84 Aligned_cols=139 Identities=19% Similarity=0.241 Sum_probs=109.7
Q ss_pred CCcccCcchHHHHHHHhhhhhhccccccccCChhHHHHHHHhccceEeCCCCEEEEeCCeeeeEEEEeeeeEEEEEehhh
Q psy1512 432 GPKVVPDKLKAEIAINVHLDTLKRVEIFQNTEAGFLCELVLRLRPVLFSPGDYICRKGNRRTASVRSVGYSDLFVLSKTD 511 (679)
Q Consensus 432 ~~~~l~~~Lr~ei~~~~~~~~l~~i~lF~~~~~~~l~~L~~~l~~~~~~pge~I~~~Gd~r~asv~a~~~~~ly~I~~g~ 511 (679)
.++.+|+.||.++..+++.++++++|+|++++++.+..++..++.+.|.+|++|+++||+ .+.+|+|.+|.
T Consensus 8 il~~lp~~l~~~i~~~~~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~---------~~~~y~i~~G~ 78 (160)
T 4f8a_A 8 VLQICPKDMRADICVHLNRKVFKEHPAFRLASDGCLRALAMEFQTVHCAPGDLIYHAGES---------VDSLCFVVSGS 78 (160)
T ss_dssp -------CCHHHHHHHHTHHHHTTCGGGTTCCHHHHHHHHTTCEEEEECTTCEEECTTSB---------CCEEEEEEESE
T ss_pred HHHHCCHHHHHHHHHHHHHHHHHhCHhhhhCCHHHHHHHHHhceeeeeCCCCEEEeCCCC---------ccEEEEEEeeE
Confidence 467789999999999999999999999999999999999999999999999999999998 78999998886
Q ss_pred HHHHHhhChhHHHHHHHHHHHHHhhhccCcccCCCCCCCCCC--CCcccccccccccceeecccchhHHHhhcChhHhhh
Q psy1512 512 MWDVLKEYPAARVRLESIAVKRLQKYKRTPLEKGISPSPFPG--NRRTASVRSVGYSDLFVLSKTDMWDVLKEYPAARVR 589 (679)
Q Consensus 512 ~~~vl~~~p~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~--~~r~atv~A~~~~~l~~L~r~~f~~il~~~P~~~~~ 589 (679)
+..... +. .-.....|+..+..+++.+ .++.++++|.++|+++.|++++|.++++++|++...
T Consensus 79 v~~~~~--------------~~-~~~~~~~G~~fG~~~~~~~~~~~~~~~~~a~~~~~v~~i~~~~~~~l~~~~p~~~~~ 143 (160)
T 4f8a_A 79 LEVIQD--------------DE-VVAILGKGDVFGDVFWKEATLAQSCANVRALTYCDLHVIKRDALQKVLEFYTAFSHS 143 (160)
T ss_dssp EEEEET--------------TE-EEEEEETTCEEECCTTTCSSCCBCSSEEEESSCEEEEEEEHHHHHHHHHHCHHHHHH
T ss_pred EEEEEC--------------CE-EEEEecCCCEeCcHHHhcCcccceEEEEEECCceEEEEEcHHHHHHHHHHHHHHHHH
Confidence 543210 00 1111223333333456666 799999999999999999999999999999999988
Q ss_pred hHHHH
Q psy1512 590 LESIA 594 (679)
Q Consensus 590 l~~~~ 594 (679)
+...+
T Consensus 144 ~~~~l 148 (160)
T 4f8a_A 144 FSRNL 148 (160)
T ss_dssp HHHHC
T ss_pred HHHHH
Confidence 77665
No 16
>2ih3_C Voltage-gated potassium channel; ION channel D-amino acid semi-synthetic, membrane protein; HET: 1EM; 1.72A {Streptomyces lividans} PDB: 2ih1_C* 1r3j_C* 1k4d_C* 1r3i_C* 1k4c_C* 1r3k_C* 1r3l_C* 2bob_C* 2boc_C* 2hvj_C* 2hvk_C* 2itc_C 2itd_C 3gb7_C* 3iga_C* 1jvm_A 1s5h_C* 3ifx_A* 1j95_A 2jk5_C* ...
Probab=99.43 E-value=6.7e-13 Score=117.77 Aligned_cols=60 Identities=20% Similarity=0.343 Sum_probs=55.1
Q ss_pred hhhhHHHHHHHHHHhhccc--CCcCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1512 275 VKQYLQSYYWCTLALTTIG--DLPRPRSKGEYFFVIVQLLFGLLLFATVLGHVANIVTSVSAA 335 (679)
Q Consensus 275 ~~~Y~~slywa~~tlttvG--di~~p~t~~e~i~~i~~~i~G~~~~a~~ig~i~~ii~~~~~~ 335 (679)
...|.+|+||+++|+||+| |+ .|.|..+++++++.+++|++++++++|.+++.+.+..++
T Consensus 59 ~~~~~~a~y~~~~T~tTvGyGDi-~P~t~~gr~~~~~~~~~Gi~~~~~~~~~i~~~~~~~~~~ 120 (122)
T 2ih3_C 59 LITYPRALWWACETATTVAYGDL-YPVTLWGRLVAVVVMVAGITSFGLVTAALATWFVGREQE 120 (122)
T ss_dssp CCSHHHHHHHHHHHHTTCCCSSS-CCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCccccchhheeeeeeeeecCCC-CCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4579999999999999998 99 699999999999999999999999999999999876553
No 17
>3vou_A ION transport 2 domain protein, voltage-gated SOD channel; 4-helical bundle, ION channel, membrane, transport protein; 3.20A {Bacillus weihenstephanensis}
Probab=99.39 E-value=3.2e-12 Score=117.73 Aligned_cols=110 Identities=19% Similarity=0.334 Sum_probs=84.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCcccCCCCCchhhhhhHHHHHHHHHHhhccc--CCcCCCCchhHHHHHHH
Q psy1512 233 SSLIHYLLVIFHWNGCLYHIIYKNDGFGSRNWVYGDSDTTDVVKQYLQSYYWCTLALTTIG--DLPRPRSKGEYFFVIVQ 310 (679)
Q Consensus 233 ~~l~~~~l~~~H~~aCl~~~i~~~~~~~~~~Wi~~~~~~~~~~~~Y~~slywa~~tlttvG--di~~p~t~~e~i~~i~~ 310 (679)
+.++..++++.++++|++|.... +| .|.+|+||+++|+||+| |+ .|.|..+++++++.
T Consensus 27 ~~~~~~~~~~~~~~g~~~~~~~e-------~~------------~~~~a~y~~~~t~tTvGyGd~-~p~t~~~r~~~~~~ 86 (148)
T 3vou_A 27 FQVLFVLTFLTLTSGTIFYSTVE-------GL------------RPLDALYFSVVTLTTVGDGNF-SPQTDFGKVFTILY 86 (148)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTS-------CC------------CHHHHHHHHHHHHTTCCCSSC-CCCSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhc-------CC------------CHHHHHHHHHHHHHccCCCCC-CCCCccHHHHHHHH
Confidence 34455666777788888776421 12 58999999999999998 99 69999999999999
Q ss_pred HHHHHHHHHHHHHHHHH------HHHH----HHHHHHHHHHHHHHHHHHHHhCCCCHHHHHH
Q psy1512 311 LLFGLLLFATVLGHVAN------IVTS----VSAARKEFQAKLDGVKTYMRMRRVPNALQVK 362 (679)
Q Consensus 311 ~i~G~~~~a~~ig~i~~------ii~~----~~~~~~~~~~~~~~l~~~m~~~~lp~~l~~r 362 (679)
+++|+++++++++.++. +... .+..+.+..+++++++++++.++.|++|+.|
T Consensus 87 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rl~~i~~~~~~~~~~~~L~~R 148 (148)
T 3vou_A 87 IFIGIGLVFGFIHKLAVNVQLPSILSNRKKETDAYRLEVMEKLEAIEKKLAEHSRQGSLVPR 148 (148)
T ss_dssp HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCCCC
Confidence 99999999999999986 3332 3555666778899999999999999999876
No 18
>4h33_A LMO2059 protein; bilayers, KVLM, lipidic cubic phase (LCP), pore module, ION membrane protein; HET: OLC; 3.10A {Listeria monocytogenes} PDB: 4h37_A
Probab=99.35 E-value=5.9e-13 Score=120.62 Aligned_cols=91 Identities=14% Similarity=0.292 Sum_probs=53.7
Q ss_pred hhHHHHHHHHHHhhccc--CCcCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Q psy1512 277 QYLQSYYWCTLALTTIG--DLPRPRSKGEYFFVIVQLLFGLLLFATVLGHVANIVTSVSAARKEFQAKLDGVKTYMRMRR 354 (679)
Q Consensus 277 ~Y~~slywa~~tlttvG--di~~p~t~~e~i~~i~~~i~G~~~~a~~ig~i~~ii~~~~~~~~~~~~~~~~l~~~m~~~~ 354 (679)
.|.+|+||+++|+||+| |+ .|.|..|+++++++|++|++++|++++.+++.+......+.+.++..+..+...+..+
T Consensus 43 ~~~~a~y~~~~T~tTvGyGDi-~P~t~~gr~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 121 (137)
T 4h33_A 43 NYPDALWWAIVTATTVGYGDI-VPVTPIGRILASIMMLFGIAFIGMITSTITNFFRCKKPTNSSTQRANKITQLISETPD 121 (137)
T ss_dssp SHHHHHHHHHHHHTTCCCSSS-CCCSHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTTTTC-------------------
T ss_pred CHHHHHHHHHHHHHcccCCCC-CCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 59999999999999998 99 6999999999999999999999999999999987655544443333333334445556
Q ss_pred CCHHHHHHHHHHHH
Q psy1512 355 VPNALQVKVIKWFD 368 (679)
Q Consensus 355 lp~~l~~rv~~y~~ 368 (679)
++++.+..+++|++
T Consensus 122 l~~~~i~~l~~~l~ 135 (137)
T 4h33_A 122 LTKEEIAVVEQFLT 135 (137)
T ss_dssp --------------
T ss_pred ccHHHHHHHHHHHh
Confidence 77777777776654
No 19
>3rvy_A ION transport protein; tetrameric ION channel, voltage-gated sodium-selective ION C membrane, metal transport; HET: PX4; 2.70A {Arcobacter butzleri} PDB: 3rvz_A* 4ekw_A* 3rw0_A*
Probab=99.34 E-value=8.8e-13 Score=135.72 Aligned_cols=207 Identities=10% Similarity=0.139 Sum_probs=129.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhcccccccchhhHHHHHHHHHHHHHHHHHhhheeEEEECCeEeeCHHHHHHHHhcCCC
Q psy1512 99 YYWSMIVSLAFLYNFWVIIYRFAFQEINRESLVIWFCLDYMADLMYVIDILIHFRTGYLEDGVLQTDSTKLRDHYMNSTT 178 (679)
Q Consensus 99 ~~W~~i~~~~~~~~~~~ip~~~~F~~~~~~~~~~~~~~~~i~d~~f~~Di~l~f~t~y~~~g~~v~d~~~I~~~Ylks~~ 178 (679)
..++.+++++++.+++.+.+.. ++.........+..+|.++.++|.+|+++++... + ++|++++|
T Consensus 30 ~~f~~~i~~li~l~~i~~~~~~-~~~~~~~~~~~l~~~e~~~~~iF~~E~~lrl~~~----------~----~~y~~~~w 94 (285)
T 3rvy_A 30 SFFTKFIIYLIVLNGITMGLET-SKTFMQSFGVYTTLFNQIVITIFTIEIILRIYVH----------R----ISFFKDPW 94 (285)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTT-CTTHHHHSHHHHHHHHHHHHHHHHHHHHHHHHTT----------G----GGGGGCHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhc-CcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------h----HHHHcCCh
Confidence 3678888888888887766542 2212222333456799999999999999999764 1 67999999
Q ss_pred ceehhhhccchHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhhhhhcc--chhHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy1512 179 FYIDCLCLLPLDFLYLSIGFNSILRLFRLVKIYRFWAFMDRTERHTN--YPNLFRSSSLIHYLLVIFHWNGCLYHIIYKN 256 (679)
Q Consensus 179 f~~Dlls~lP~~~~~~~~~~~~~lrl~rllrl~rl~~~~~~~~~~~~--~~~~~~~~~l~~~~l~~~H~~aCl~~~i~~~ 256 (679)
.++|+++++|...- .......+|++|++|++|+.+....++.... ....-.+..++..++++.-.+|++-+.+...
T Consensus 95 n~~Dl~~v~~~~i~--~~~~~~~lr~~RilR~lrl~~~~~~l~~l~~~l~~~~~~l~~~~~~~~~~~~~fa~~g~~~f~~ 172 (285)
T 3rvy_A 95 SLFDFFVVAISLVP--TSSGFEILRVLRVLRLFRLVTAVPQMRKIVSALISVIPGMLSVIALMTLFFYIFAIMATQLFGE 172 (285)
T ss_dssp HHHHHHHHHHHHSC--SSSSCTHHHHHGGGGGGHHHHSSTTHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHhHHHHHHHHHHc--ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCc
Confidence 99999988775321 1222345666666666666655443332110 0000112222333333333344433322211
Q ss_pred CCCCCCCcccCCCCCchhhhhhHHHHHHHHHHhhccc---CCcCCCCchh----HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1512 257 DGFGSRNWVYGDSDTTDVVKQYLQSYYWCTLALTTIG---DLPRPRSKGE----YFFVIVQLLFGLLLFATVLGHVANIV 329 (679)
Q Consensus 257 ~~~~~~~Wi~~~~~~~~~~~~Y~~slywa~~tlttvG---di~~p~t~~e----~i~~i~~~i~G~~~~a~~ig~i~~ii 329 (679)
...+.+..+..|+||++.++||+| |+..|.+... +.+++++++.|+++.+.++|.+.+.+
T Consensus 173 -------------~~~~~F~s~~~a~~~~~~~~T~~g~~~di~~p~~~~~~~~~~~f~~~~~i~~~~~lnl~~aii~~~f 239 (285)
T 3rvy_A 173 -------------RFPEWFGTLGESFYTLFQVMTLESWSMGIVRPLMEVYPYAWVFFIPFIFVVTFVMINLVVAICVDAM 239 (285)
T ss_dssp -------------TCHHHHSSHHHHHHHHHHHHTTTTCCCCCHHHHHTTCTTTHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred -------------ccccccCCHHHHHHHHHHHHHhCCCcHHHHHHHHHcCChHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 112457889999999999999986 6633665544 88999999999999999999999888
Q ss_pred HHHHHH
Q psy1512 330 TSVSAA 335 (679)
Q Consensus 330 ~~~~~~ 335 (679)
....++
T Consensus 240 ~~~~~~ 245 (285)
T 3rvy_A 240 AILNQK 245 (285)
T ss_dssp ------
T ss_pred HHHHHH
Confidence 765543
No 20
>3ocp_A PRKG1 protein; serine/threonine kinase, TF2I and IRAG, transferase; HET: CMP; 2.49A {Homo sapiens} PDB: 3od0_A* 3ogj_A*
Probab=99.23 E-value=3e-13 Score=123.20 Aligned_cols=131 Identities=14% Similarity=0.120 Sum_probs=101.6
Q ss_pred ccCcchHHHHHHHhhhhhhccccccccCChhHHHHHHHhccceEeCCCCEEEEeCCeeeeEEEEeeeeEEEEEehhhHHH
Q psy1512 435 VVPDKLKAEIAINVHLDTLKRVEIFQNTEAGFLCELVLRLRPVLFSPGDYICRKGNRRTASVRSVGYSDLFVLSKTDMWD 514 (679)
Q Consensus 435 ~l~~~Lr~ei~~~~~~~~l~~i~lF~~~~~~~l~~L~~~l~~~~~~pge~I~~~Gd~r~asv~a~~~~~ly~I~~g~~~~ 514 (679)
.+|..+|.+...+...++|+++++|++++++.+..++..++.+.|.+|++|+++||+ .+.+|+|.+|.+..
T Consensus 7 ~~p~~~k~~~~~~~~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~---------~~~~y~i~~G~v~~ 77 (139)
T 3ocp_A 7 TLPFYPKSPQSKDLIKEAILDNDFMKNLELSQIQEIVDCMYPVEYGKDSCIIKEGDV---------GSLVYVMEDGKVEV 77 (139)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHCTTTTTSCHHHHHHHHHHCEEEEECSSCEEECTTSC---------CCEEEEEEECCEEE
T ss_pred cCCCCCCCHHHHHHHHHHHhcCHhhhcCCHHHHHHHHHhcEEEecCCCCEEEeCCCc---------CCEEEEEEeCEEEE
Confidence 359999999999999999999999999999999999999999999999999999998 78999998886542
Q ss_pred HHhhChhHHHHHHHHHHHHHhhhccCcccCCCCCCCCCCCCcccccccccccceeecccchhHHHhhcChhHhhh
Q psy1512 515 VLKEYPAARVRLESIAVKRLQKYKRTPLEKGISPSPFPGNRRTASVRSVGYSDLFVLSKTDMWDVLKEYPAARVR 589 (679)
Q Consensus 515 vl~~~p~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~r~atv~A~~~~~l~~L~r~~f~~il~~~P~~~~~ 589 (679)
.- .+ . .-.....++..+..+++.+.++.++++|.++|+++.|++++|.++++++|..+++
T Consensus 78 ~~------~g--------~-~~~~~~~G~~fGe~~~l~~~~~~~~~~a~~~~~v~~i~~~~~~~l~~~~p~~~r~ 137 (139)
T 3ocp_A 78 TK------EG--------V-KLCTMGPGKVFGELAILYNCTRTATVKTLVNVKLWAIDRQCFQTIMMRTGLIKHT 137 (139)
T ss_dssp EE------TT--------E-EEEEECTTCEESCHHHHHCCCCSSEEEESSCEEEEEEEHHHHHHHHTC-------
T ss_pred EE------CC--------E-EEEEeCCCCEeccHHHHCCCCcceEEEECcceEEEEEcHHHHHHHHhhChHhhhh
Confidence 10 00 0 0011223333333345678899999999999999999999999999999998754
No 21
>3eff_K Voltage-gated potassium channel; FULL length KCSA, bulge helix, cell membrane, ION transport, ionic channel, membrane, transmembrane; 3.80A {Streptomyces lividans}
Probab=99.22 E-value=6.4e-11 Score=107.79 Aligned_cols=118 Identities=17% Similarity=0.251 Sum_probs=79.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCcccCCCCCchhhhhhHHHHHHHHHHhhccc--CCcCCCCchhHHHHHHH
Q psy1512 233 SSLIHYLLVIFHWNGCLYHIIYKNDGFGSRNWVYGDSDTTDVVKQYLQSYYWCTLALTTIG--DLPRPRSKGEYFFVIVQ 310 (679)
Q Consensus 233 ~~l~~~~l~~~H~~aCl~~~i~~~~~~~~~~Wi~~~~~~~~~~~~Y~~slywa~~tlttvG--di~~p~t~~e~i~~i~~ 310 (679)
+..++.++++.+..+++++.+.... +.+....|.+|+||+++|+||+| |+ .|.|..+++++++.
T Consensus 9 ~~~~~~~~~~~~~~a~~~~~~e~~~-------------~~~~~~~~~~a~yf~~~T~tTvGyGd~-~P~t~~~r~~~~~~ 74 (139)
T 3eff_K 9 GAATVLLVIVLLAGSYLAVLAERGA-------------PGAQLITYPRALWWSVETATTVGYGDL-YPVTLWGRLVAVVV 74 (139)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTSSC-------------TTCCCCCHHHHHHHHHHHHTTCCCSSS-CCCSSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCC-------------CCcccCCHHHHHHHHheeeecccCCCC-cCCCcCHHHHHHHH
Confidence 3344455556666677776654322 11223579999999999999997 99 69999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q psy1512 311 LLFGLLLFATVLGHVANIVTSVSAAR-KEFQAKLDGVKTYMRMRRVPNALQVKVIK 365 (679)
Q Consensus 311 ~i~G~~~~a~~ig~i~~ii~~~~~~~-~~~~~~~~~l~~~m~~~~lp~~l~~rv~~ 365 (679)
+++|+++++++++.+++.+.+...++ +++.++.+.....+-.+++ ++++.|+.+
T Consensus 75 ~~~G~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~l~~~l~~ 129 (139)
T 3eff_K 75 MVAGITSFGLVTAALATWFVGREQERRGHFVRHSEKAAEEAYTRTT-RALHERFDR 129 (139)
T ss_dssp HHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH-HHHHHHHHH
Confidence 99999999999999999876654433 3333444443333333333 444444443
No 22
>3mdp_A Cyclic nucleotide-binding domain (CNMP-BD) protei; structural genomics, joint center for structural genomics; HET: MSE; 1.90A {Geobacter metallireducens}
Probab=99.21 E-value=5.7e-12 Score=114.66 Aligned_cols=132 Identities=12% Similarity=0.073 Sum_probs=102.0
Q ss_pred hhhhccccccccCChhHHHHHHHhccceEeCCCCEEEEeCCeeeeEEEEeeeeEEEEEehhhHHHHHhhChhHHHHHHHH
Q psy1512 450 LDTLKRVEIFQNTEAGFLCELVLRLRPVLFSPGDYICRKGNRRTASVRSVGYSDLFVLSKTDMWDVLKEYPAARVRLESI 529 (679)
Q Consensus 450 ~~~l~~i~lF~~~~~~~l~~L~~~l~~~~~~pge~I~~~Gd~r~asv~a~~~~~ly~I~~g~~~~vl~~~p~~~~~~~~~ 529 (679)
.+.|+++|+|++++++.+..++..++.+.|.+|++|+++||+ .+.+|+|.+|.+...... ..|.
T Consensus 5 ~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~---------~~~~y~i~~G~v~~~~~~---~~g~---- 68 (142)
T 3mdp_A 5 PERLRVYRFFASLTDEQLKDIALISEEKSFPTGSVIFKENSK---------ADNLMLLLEGGVELFYSN---GGAG---- 68 (142)
T ss_dssp TTGGGGSHHHHTSCHHHHHHHHHTEEEEEECTTCEEECTTSB---------CCEEEEEEESCEEEECC------------
T ss_pred HHHHhhCchhccCCHHHHHHHHHhhcEEecCCCCEEEeCCCC---------CCcEEEEEeCEEEEEEEC---CCCC----
Confidence 467899999999999999999999999999999999999998 789999988865322110 0110
Q ss_pred HHHHHh--hhccCcccCCCCCCCCCCCCcccccccccccceeecccchhHHHhhcChhHhhhhHHHHHHHhh
Q psy1512 530 AVKRLQ--KYKRTPLEKGISPSPFPGNRRTASVRSVGYSDLFVLSKTDMWDVLKEYPAARVRLESIAVKRLQ 599 (679)
Q Consensus 530 ~~~~~~--~~~~~~~~~g~~~~~~~~~~r~atv~A~~~~~l~~L~r~~f~~il~~~P~~~~~l~~~~~~rl~ 599 (679)
+... -.....++..+..+++.+.++.++++|.++|+++.|++++|.++++++|++...+...+.+++.
T Consensus 69 --~~~~~~~~~~~~G~~fG~~~~~~~~~~~~~~~a~~~~~~~~i~~~~~~~l~~~~p~~~~~l~~~l~~~l~ 138 (142)
T 3mdp_A 69 --SAANSTVCSVVPGAIFGVSSLIKPYHYTSSARATKPVRVVDINGARLREMSENNQALGQVLMNNVAAAVL 138 (142)
T ss_dssp ------CEEEEECTTCEECGGGSSTTCBCSSEEEESSCEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHHHHH
T ss_pred --ceEeeeEEEecCCCEechHHHcCCCCceEEEEECCcEEEEEEeHHHHHHHHHHChHHHHHHHHHHHHHHH
Confidence 0000 1112233433345677899999999999999999999999999999999999888877776554
No 23
>1vp6_A CNBD, cyclic-nucleotide binding domain of mesorhizobium LOTI CNG potassium channel; dimer helical bundle beta barrel core with cyclic AMP bound; HET: CMP; 1.70A {Mesorhizobium loti} SCOP: b.82.3.2 PDB: 3cl1_A* 2k0g_A* 2kxl_A 3clp_A* 1u12_A 3co2_A
Probab=99.18 E-value=4.5e-12 Score=114.89 Aligned_cols=127 Identities=20% Similarity=0.223 Sum_probs=103.1
Q ss_pred hhhhhccccccccCChhHHHHHHHhccceEeCCCCEEEEeCCeeeeEEEEeeeeEEEEEehhhHHHHHhhChhHHHHHHH
Q psy1512 449 HLDTLKRVEIFQNTEAGFLCELVLRLRPVLFSPGDYICRKGNRRTASVRSVGYSDLFVLSKTDMWDVLKEYPAARVRLES 528 (679)
Q Consensus 449 ~~~~l~~i~lF~~~~~~~l~~L~~~l~~~~~~pge~I~~~Gd~r~asv~a~~~~~ly~I~~g~~~~vl~~~p~~~~~~~~ 528 (679)
..+.++++|+|++++++.+..++..++.+.|.+|++|+++||+ .+.+|+|.+|.+......
T Consensus 9 ~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~---------~~~~y~i~~G~v~~~~~~---------- 69 (138)
T 1vp6_A 9 NWQLVAAVPLFQKLGPAVLVEIVRALRARTVPAGAVICRIGEP---------GDRMFFVVEGSVSVATPN---------- 69 (138)
T ss_dssp HHHHHTTCGGGGGCCHHHHHHHHHHCEEEEECTTCEEECTTSC---------CCEEEEEEESCEEECSSS----------
T ss_pred HHHHHHhChhhhcCCHHHHHHHHHhhcEEEeCCCCEEEeCCCC---------cceEEEEEeeEEEEEeCC----------
Confidence 3567999999999999999999999999999999999999998 788999988865432211
Q ss_pred HHHHHHhhhccCcccCCCCCCCCCCCCcccccccccccceeecccchhHHHhhcChhHhhhhHHHHHHHhhhc
Q psy1512 529 IAVKRLQKYKRTPLEKGISPSPFPGNRRTASVRSVGYSDLFVLSKTDMWDVLKEYPAARVRLESIAVKRLQKY 601 (679)
Q Consensus 529 ~~~~~~~~~~~~~~~~g~~~~~~~~~~r~atv~A~~~~~l~~L~r~~f~~il~~~P~~~~~l~~~~~~rl~~~ 601 (679)
......|+..+..+++.+.++.++++|.++|+++.|++++|.++++++|++...+...+.+|++..
T Consensus 70 -------~~~~~~G~~~G~~~~~~~~~~~~~~~a~~~~~~~~i~~~~~~~l~~~~p~~~~~~~~~~~~r~~~~ 135 (138)
T 1vp6_A 70 -------PVELGPGAFFGEMALISGEPRSATVSAATTVSLLSLHSADFQMLCSSSPEIAEIFRKTALERRGAA 135 (138)
T ss_dssp -------CEEECTTCEECHHHHHHCCCCSSCEEESSSEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHHHCC--
T ss_pred -------cceECCCCEeeehHhccCCCceeEEEECCCEEEEEECHHHHHHHHHHCHHHHHHHHHHHHHhhccc
Confidence 011222332222345667899999999999999999999999999999999999999998887654
No 24
>2z69_A DNR protein; beta barrel, dimerization helix, transcription regulator; 2.10A {Pseudomonas aeruginosa}
Probab=99.12 E-value=1.8e-11 Score=113.05 Aligned_cols=135 Identities=17% Similarity=0.127 Sum_probs=105.2
Q ss_pred hhhhccccccccCChhHHHHHHHhccceEeCCCCEEEEeCCeeeeEEEEeeeeEEEEEehhhHHHHHhhChhHHHHHHHH
Q psy1512 450 LDTLKRVEIFQNTEAGFLCELVLRLRPVLFSPGDYICRKGNRRTASVRSVGYSDLFVLSKTDMWDVLKEYPAARVRLESI 529 (679)
Q Consensus 450 ~~~l~~i~lF~~~~~~~l~~L~~~l~~~~~~pge~I~~~Gd~r~asv~a~~~~~ly~I~~g~~~~vl~~~p~~~~~~~~~ 529 (679)
.+.++++++|.+++++.+..++..++.+.|.+|++|+++||+ .+.+|+|.+|.+...... + .|.
T Consensus 11 ~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~---------~~~~y~i~~G~v~~~~~~-~--~g~---- 74 (154)
T 2z69_A 11 QQLLQSHHLFEPLSPVQLQELLASSDLVNLDKGAYVFRQGEP---------AHAFYYLISGCVKIYRLT-P--EGQ---- 74 (154)
T ss_dssp HHHHTTSTTTTTSCHHHHHHHHHTCEEEEECTTCEEECTTSB---------CCEEEEEEESCEEEECCC-C---------
T ss_pred HHHhhcChhhcCCCHHHHHHHHhhCcEEEecCCCEEecCCCc---------cceEEEEEeCEEEEEEEC-C--CCC----
Confidence 467899999999999999999999999999999999999998 788999988865322110 0 110
Q ss_pred HHHHHhhhccCcccCCCCCCCCCCCC-cccccccccccceeecccchhHHHhhcChhHhhhhHHHHHHHhhhcCC
Q psy1512 530 AVKRLQKYKRTPLEKGISPSPFPGNR-RTASVRSVGYSDLFVLSKTDMWDVLKEYPAARVRLESIAVKRLQKYKR 603 (679)
Q Consensus 530 ~~~~~~~~~~~~~~~g~~~~~~~~~~-r~atv~A~~~~~l~~L~r~~f~~il~~~P~~~~~l~~~~~~rl~~~~~ 603 (679)
+ ..-.....++..+..+++.+.+ +.++++|.++|+++.|++++|.++++++|++...+...+.+|++....
T Consensus 75 --~-~~~~~~~~G~~~G~~~~~~~~~~~~~~~~a~~~~~~~~i~~~~~~~l~~~~p~~~~~l~~~~~~rl~~~~~ 146 (154)
T 2z69_A 75 --E-KILEVTNERNTFAEAMMFMDTPNYVATAQAVVPSQLFRFSNKAYLRQLQDNTPLALALLAKLSTRLHQRID 146 (154)
T ss_dssp -----CCEEECTTEEESGGGGGSSCSBCSSEEEESSSEEEEEEEHHHHHHHHTTCHHHHHHHHHHHHHHHTCCSS
T ss_pred --E-EEEEEccCCCeeccHhhccCCCCCceEEEEccceEEEEECHHHHHHHHHHChHHHHHHHHHHHHHHHHHHH
Confidence 0 0011122333333345567777 999999999999999999999999999999999999999998877655
No 25
>2pqq_A Putative transcriptional regulator; APC7345, streptomyces coelicolor structural genomics, PSI-2, protein structure initiative; 2.00A {Streptomyces coelicolor A3}
Probab=99.11 E-value=1e-11 Score=113.94 Aligned_cols=135 Identities=22% Similarity=0.213 Sum_probs=104.5
Q ss_pred hhhhccccccccCChhHHHHHHHhccceEeCCCCEEEEeCCeeeeEEEEeeeeEEEEEehhhHHHHHhhChhHHHHHHHH
Q psy1512 450 LDTLKRVEIFQNTEAGFLCELVLRLRPVLFSPGDYICRKGNRRTASVRSVGYSDLFVLSKTDMWDVLKEYPAARVRLESI 529 (679)
Q Consensus 450 ~~~l~~i~lF~~~~~~~l~~L~~~l~~~~~~pge~I~~~Gd~r~asv~a~~~~~ly~I~~g~~~~vl~~~p~~~~~~~~~ 529 (679)
.++++++|+|.+++++.+..++..++.+.|.+|++|+++||+ .+.+|+|.+|.+...... + .|.
T Consensus 4 ~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~---------~~~~y~i~~G~v~~~~~~-~--~g~---- 67 (149)
T 2pqq_A 4 DDVLRRNPLFAALDDEQSAELRASMSEVTLARGDTLFHEGDP---------GDRLYVVTEGKVKLHRTS-P--DGR---- 67 (149)
T ss_dssp GGGGTSSTTTTTCCHHHHHHHHHHCEEEEECTTCEEECTTSE---------ECEEEEEEESCEEEEEEC-T--TSS----
T ss_pred HHHhhhChhhhcCCHHHHHHHHHhceEEEeCCCCEEECCCCC---------CCeEEEEEecEEEEEEEC-C--CCc----
Confidence 467899999999999999999999999999999999999998 778999988865322110 0 000
Q ss_pred HHHHHhhhccCcccCCCCCCCCCCCCcccccccccccceeecccchhHHHhhcChhHhhhhHHHHHHHhhhcCC
Q psy1512 530 AVKRLQKYKRTPLEKGISPSPFPGNRRTASVRSVGYSDLFVLSKTDMWDVLKEYPAARVRLESIAVKRLQKYKR 603 (679)
Q Consensus 530 ~~~~~~~~~~~~~~~g~~~~~~~~~~r~atv~A~~~~~l~~L~r~~f~~il~~~P~~~~~l~~~~~~rl~~~~~ 603 (679)
...-.....++..+..+++.+.|+.++++|.++|+++.|++++|.++++++|++...+...+.+|+.....
T Consensus 68 ---~~~~~~~~~g~~~G~~~~~~~~~~~~~~~a~~~~~~~~i~~~~~~~l~~~~p~~~~~~~~~~~~~l~~~~~ 138 (149)
T 2pqq_A 68 ---ENMLAVVGPSELIGELSLFDPGPRTATGTALTEVKLLALGHGDLQPWLNVRPEVATALLRAVARRLRKTND 138 (149)
T ss_dssp ---EEEEEEECTTCEESGGGGTSCEECSSEEEESSCEEEEEEEGGGHHHHHHHCTHHHHHHHHHHHHHHHHHHT
T ss_pred ---EEEEEEcCCcCEechHHhcCCCCcceEEEEccceEEEEEeHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHH
Confidence 00001112233323346677889999999999999999999999999999999999999888887765544
No 26
>3idb_B CAMP-dependent protein kinase type II-beta regulatory subunit, CAMP-dependent protein kinase catalytic subunit alpha; PKA, SPR, affinity; HET: TPO SEP ANP; 1.62A {Rattus norvegicus} PDB: 3idc_B*
Probab=99.07 E-value=7.1e-12 Score=117.08 Aligned_cols=133 Identities=11% Similarity=0.102 Sum_probs=100.7
Q ss_pred hHHHHHHHhhhhhhccccccccCChhHHHHHHHhccceEeCCCCEEEEeCCeeeeEEEEeeeeEEEEEehhhHHHHHhhC
Q psy1512 440 LKAEIAINVHLDTLKRVEIFQNTEAGFLCELVLRLRPVLFSPGDYICRKGNRRTASVRSVGYSDLFVLSKTDMWDVLKEY 519 (679)
Q Consensus 440 Lr~ei~~~~~~~~l~~i~lF~~~~~~~l~~L~~~l~~~~~~pge~I~~~Gd~r~asv~a~~~~~ly~I~~g~~~~vl~~~ 519 (679)
-|.+...+...++|+++|+|++++++.+..++..++.+.|.+|++|+++||+ .+.+|+|.+|.+......
T Consensus 27 ~~~~~~~~~~~~~l~~~~~f~~l~~~~l~~l~~~~~~~~~~~g~~i~~~G~~---------~~~~y~i~~G~v~~~~~~- 96 (161)
T 3idb_B 27 PKTDDQRNRLQEACKDILLFKNLDPEQMSQVLDAMFEKLVKEGEHVIDQGDD---------GDNFYVIDRGTFDIYVKC- 96 (161)
T ss_dssp CCCHHHHHHHHHHHTTCHHHHTSCHHHHHHHHHHCEEEEECTTCEEECTTSC---------CCEEEEEEESEEEEEEEE-
T ss_pred CCCHHHHHHHHHHHhCCHhhhcCCHHHHHHHHHhcceeEeCCCCEEEeCCCC---------CcEEEEEEeCEEEEEEcC-
Confidence 3444555667889999999999999999999999999999999999999998 788999988865322200
Q ss_pred hhHHHHHHHHHHHHHhhhccCcccCCCCCCCCCCCCcccccccccccceeecccchhHHHhhcChhHhhhhHH
Q psy1512 520 PAARVRLESIAVKRLQKYKRTPLEKGISPSPFPGNRRTASVRSVGYSDLFVLSKTDMWDVLKEYPAARVRLES 592 (679)
Q Consensus 520 p~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~r~atv~A~~~~~l~~L~r~~f~~il~~~P~~~~~l~~ 592 (679)
.|. ...-.....|+..+..+++.+.++.++++|.++|+++.|++++|.++++++|..+..+..
T Consensus 97 ---~g~-------~~~~~~~~~G~~fGe~~~~~~~~~~~~v~A~~~~~~~~i~~~~~~~l~~~~p~~~~~~~~ 159 (161)
T 3idb_B 97 ---DGV-------GRCVGNYDNRGSFGELALMYNTPRAATITATSPGALWGLDRVTFRRIIVKNNAKKRKMYE 159 (161)
T ss_dssp ---TTE-------EEEEEEEESCCEECGGGGTCCCCCSSEEEESSSEEEEEEEHHHHHHHHHHHHHTSCCC--
T ss_pred ---CCC-------eEEEEEcCCCCEechHHHHcCCCcccEEEECCCeEEEEEeHHHHHHHHHHCHHHHHHHHh
Confidence 000 000001122333333466779999999999999999999999999999999998876543
No 27
>3gyd_A CNMP-BD protein, cyclic nucleotide-binding domain; nucleotide binding protein, structural genomics; HET: MSE CMP; 1.79A {Methylobacillus flagellatus KT}
Probab=99.02 E-value=5.5e-12 Score=121.23 Aligned_cols=143 Identities=14% Similarity=0.092 Sum_probs=104.5
Q ss_pred chHHHHHHHhhhhhhccccccccCChhHHHHHHHhccceEeCCCCEEEEeCCeeeeEEEEeeeeEEEEEehhhHHHHHhh
Q psy1512 439 KLKAEIAINVHLDTLKRVEIFQNTEAGFLCELVLRLRPVLFSPGDYICRKGNRRTASVRSVGYSDLFVLSKTDMWDVLKE 518 (679)
Q Consensus 439 ~Lr~ei~~~~~~~~l~~i~lF~~~~~~~l~~L~~~l~~~~~~pge~I~~~Gd~r~asv~a~~~~~ly~I~~g~~~~vl~~ 518 (679)
..+.+...+...++++++|+|++++++.+..++..++.+.|.+|++|+++||+ .+.+|+|.+|.+......
T Consensus 27 ~~~~~~~~~~~~~~L~~~~~f~~l~~~~l~~l~~~~~~~~~~~ge~i~~~G~~---------~~~ly~I~~G~v~v~~~~ 97 (187)
T 3gyd_A 27 LGGADKYFEEILEIVNKIKLFGDFSNEEVRYLCSYMQCYAAPRDCQLLTEGDP---------GDYLLLILTGEVNVIKDI 97 (187)
T ss_dssp EEEGGGGHHHHHHHHTTCCSSCCCCHHHHHHHHTTCEEEEECTTCEEECTTSC---------CCEEEEEEEEEEEEEEEE
T ss_pred cCccHHHHHHHHHHHhcCHhhhcCCHHHHHHHHHhcEEEEeCCCCEEEcCCCC---------CCeEEEEEeCEEEEEEEC
Confidence 33444555666789999999999999999999999999999999999999998 778999987754322110
Q ss_pred ChhHHHHHHHHHHHHHhhhccCcccCCCCCCCCCCCCcccccccccccceeecccchhHHHhhcChhHhhhhH----HHH
Q psy1512 519 YPAARVRLESIAVKRLQKYKRTPLEKGISPSPFPGNRRTASVRSVGYSDLFVLSKTDMWDVLKEYPAARVRLE----SIA 594 (679)
Q Consensus 519 ~p~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~r~atv~A~~~~~l~~L~r~~f~~il~~~P~~~~~l~----~~~ 594 (679)
+ .|. ...-.....++..+..+++.+.|+.++++|.++|+++.|++++|.++++++|+....+. ..+
T Consensus 98 -~--~g~-------~~~~~~~~~G~~fGe~~~l~~~~~~~~v~A~~~~~v~~i~~~~~~~l~~~~p~~~~~l~~~l~~~l 167 (187)
T 3gyd_A 98 -P--NKG-------IQTIAKVGAGAIIGEMSMIDGMPRSASCVASLPTDFAVLSRDALYQLLANMPKLGNKVLIRLLQLL 167 (187)
T ss_dssp -T--TTE-------EEEEEEEETTCEESHHHHHHCCCCSSEEEEEEEEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred -C--CCC-------eEEEEEccCCCeeeeHHHhCCCCeeEEEEECCCeEEEEEcHHHHHHHHHHChHHHHHHHHHHHHHH
Confidence 0 000 00000111222222234556889999999999999999999999999999999988777 445
Q ss_pred HHHhhh
Q psy1512 595 VKRLQK 600 (679)
Q Consensus 595 ~~rl~~ 600 (679)
.+|++.
T Consensus 168 ~~rl~~ 173 (187)
T 3gyd_A 168 TARFRE 173 (187)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 555543
No 28
>2k1e_A Water soluble analogue of potassium channel, KCSA; homotetramer, ION transport, ionic channel, membrane, transmembrane, transport; NMR {Escherichia coli} PDB: 2kb1_A
Probab=99.02 E-value=2.6e-10 Score=97.93 Aligned_cols=89 Identities=15% Similarity=0.113 Sum_probs=70.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCcccCCCCCchhhhhhHHHHHHHHHHhhccc--CCcCCCCchhHHHHHHH
Q psy1512 233 SSLIHYLLVIFHWNGCLYHIIYKNDGFGSRNWVYGDSDTTDVVKQYLQSYYWCTLALTTIG--DLPRPRSKGEYFFVIVQ 310 (679)
Q Consensus 233 ~~l~~~~l~~~H~~aCl~~~i~~~~~~~~~~Wi~~~~~~~~~~~~Y~~slywa~~tlttvG--di~~p~t~~e~i~~i~~ 310 (679)
+..+..++++..+.+++++.+....+ .+....|.+|+||+++|+||+| |+ .|.|..+++++++.
T Consensus 9 l~~~~~~~~~~~~~a~~~~~~E~~~~-------------~~~~~~~~~a~y~~~~T~tTvGyGDi-~P~t~~gr~~~~~~ 74 (103)
T 2k1e_A 9 QKAEEELQKVLEEASKKAVEAERGAP-------------GAALISYPDAIWWSVETATTVGYGDR-YPVTEEGRKVAEQV 74 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTST-------------TCCCCCGGGTTTTTTGGGGCCSCCSS-CCCSSSCTHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhhhccCCC-------------CcccccHHHHHHHHHHHHhcccCCCC-CCCChhHHHHHHHH
Confidence 33445556666677888887753321 1223579999999999999998 99 69999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1512 311 LLFGLLLFATVLGHVANIVTSVSAA 335 (679)
Q Consensus 311 ~i~G~~~~a~~ig~i~~ii~~~~~~ 335 (679)
+++|+++++++++.+++.+.+..++
T Consensus 75 ~l~G~~~~~~~~~~i~~~~~~~~~~ 99 (103)
T 2k1e_A 75 MKAGIEVFALVTAALATDFVRREEE 99 (103)
T ss_dssp HHHHHHHHHHTHHHHHTTGGGHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999988776554
No 29
>2q67_A Potassium channel protein; inverted teepee, helix bundle, tetramer, central cavity, ION metal transport, membrane protein; 2.30A {Bacillus cereus} PDB: 2q68_A 2q6a_A 2q69_A 2ahy_A 2ahz_A
Probab=99.00 E-value=2.9e-09 Score=92.96 Aligned_cols=60 Identities=22% Similarity=0.379 Sum_probs=51.1
Q ss_pred hhHHHHHHHHHHhhccc--CCcCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1512 277 QYLQSYYWCTLALTTIG--DLPRPRSKGEYFFVIVQLLFGLLLFATVLGHVANIVTSVSAARK 337 (679)
Q Consensus 277 ~Y~~slywa~~tlttvG--di~~p~t~~e~i~~i~~~i~G~~~~a~~ig~i~~ii~~~~~~~~ 337 (679)
.|.+|+||+++|+||+| |+ .|.|..+++++++.+++|+.++++.++.+++.++..+...+
T Consensus 49 ~~~~a~y~~~~T~tTvGyGdi-~P~t~~gr~~~~~~~~~G~~~~~~~~~~l~~~~~~~~~~~~ 110 (114)
T 2q67_A 49 RPIDALYFSVVTLTTVGAGNF-SPQTDFGKIFTILYIFIGIGLVFGFIHKLAVNVQLPSILSN 110 (114)
T ss_dssp CHHHHHHHHHHHHTSCCCSSC-CCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC------
T ss_pred CHHHHHHHHHHHhcceeCCCC-ccCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 58999999999999998 99 69999999999999999999999999999998866554433
No 30
>2d93_A RAP guanine nucleotide exchange factor 6; CNMP_binding domain, PDZ domain containing guanine nucleotide exchange factor 2, PDZ-GEF2, RA-GEF-2; NMR {Homo sapiens}
Probab=98.97 E-value=1.4e-11 Score=111.21 Aligned_cols=127 Identities=13% Similarity=0.122 Sum_probs=100.3
Q ss_pred CcchHHHHHHHhhhhhhccccccccCChhHHHHHHHhccceEeC-CCCEEEEeCCeeeeEEEEeeeeEEEEEehhhHHHH
Q psy1512 437 PDKLKAEIAINVHLDTLKRVEIFQNTEAGFLCELVLRLRPVLFS-PGDYICRKGNRRTASVRSVGYSDLFVLSKTDMWDV 515 (679)
Q Consensus 437 ~~~Lr~ei~~~~~~~~l~~i~lF~~~~~~~l~~L~~~l~~~~~~-pge~I~~~Gd~r~asv~a~~~~~ly~I~~g~~~~v 515 (679)
||..|.+.......++|+++++|..++++.+..++..++.+.|. +|++|+++||+ .+.+|+|.+|.+...
T Consensus 2 ~p~~r~~~~~~~~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~~g~~i~~~g~~---------~~~~y~i~~G~v~~~ 72 (134)
T 2d93_A 2 SSGSSGDDDIEQLLEFMHQLPAFANMTMSVRRELCSVMIFEVVEQAGAIILEDGQE---------LDSWYVILNGTVEIS 72 (134)
T ss_dssp CCSCCSTTHHHHHHHHHHHSSTTTSSCHHHHHHHTTTEEEEEECSSSCEEECTTCE---------ECEEEECCBSCEEEE
T ss_pred ChhhcCHHHHHHHHHHHhCCcchhhCCHHHHHHHHHhheEEEecCCCCEEEeCCCC---------CCeEEEEEeCEEEEE
Confidence 55666666666667789999999999999999999999999999 99999999998 778999988865422
Q ss_pred HhhChhHHHHHHHHHHHHHhhhccCcccCCCCCCCCCCCCccccc-ccccccceeecccchhHHHhhcChhHh
Q psy1512 516 LKEYPAARVRLESIAVKRLQKYKRTPLEKGISPSPFPGNRRTASV-RSVGYSDLFVLSKTDMWDVLKEYPAAR 587 (679)
Q Consensus 516 l~~~p~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~r~atv-~A~~~~~l~~L~r~~f~~il~~~P~~~ 587 (679)
. + .|. ......++..+..+++.+.++.+++ +|.++|+++.|++++|.++++++++..
T Consensus 73 ~---~--~g~----------~~~l~~G~~fG~~~~~~~~~~~~~~~~a~~~~~~~~i~~~~~~~l~~~~~~~~ 130 (134)
T 2d93_A 73 H---P--DGK----------VENLFMGNSFGITPTLDKQYMHGIVRTKVDDCQFVCIAQQDYWRILNHVEKSG 130 (134)
T ss_dssp C---S--SSC----------EEEECTTCEESCCSSSCCEECCSEEEESSSSEEEEEEEHHHHHHHSSCCSSSS
T ss_pred c---C--CCc----------EEEecCCCccChhHhcCCCcceeEEEEEecceEEEEEeHHHHHHHHHHHHhcc
Confidence 1 0 000 0112234443445778889999999 999999999999999999999988653
No 31
>3dkw_A DNR protein; CRP-FNR, HTH, beta barrel, dimerization helix, homodimer, transcription regulator; 3.60A {Pseudomonas aeruginosa}
Probab=98.96 E-value=1.5e-10 Score=114.24 Aligned_cols=130 Identities=18% Similarity=0.133 Sum_probs=100.1
Q ss_pred hhhhccccccccCChhHHHHHHHhccceEeCCCCEEEEeCCeeeeEEEEeeeeEEEEEehhhHHHHHhhChhHHHHHHHH
Q psy1512 450 LDTLKRVEIFQNTEAGFLCELVLRLRPVLFSPGDYICRKGNRRTASVRSVGYSDLFVLSKTDMWDVLKEYPAARVRLESI 529 (679)
Q Consensus 450 ~~~l~~i~lF~~~~~~~l~~L~~~l~~~~~~pge~I~~~Gd~r~asv~a~~~~~ly~I~~g~~~~vl~~~p~~~~~~~~~ 529 (679)
.++|+++|+|++++++.+..++..++.+.|.+|++|+++||+ .+.+|+|.+|.+...... + .|.
T Consensus 8 ~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~---------~~~~y~i~~G~v~~~~~~-~--~G~---- 71 (227)
T 3dkw_A 8 QQLLQSHHLFEPLSPVQLQELLASSDLVNLDKGAYVFRQGEP---------AHAFYYLISGCVKIYRLT-P--EGQ---- 71 (227)
T ss_dssp HHHHTTSTTTSSSCHHHHHHHHTSCEEEECCTTEEEECTTSB---------CCEEEEEEESCEECCBCC-G--GGC----
T ss_pred HHHHhcChhhcCCCHHHHHHHHhhCEEEEECCCCEEEcCCCc---------cceEEEEEeCEEEEEEEC-C--CCC----
Confidence 467899999999999999999999999999999999999998 788999988865322110 0 000
Q ss_pred HHHHHhhhccCcccCCCCCCCCCCCC-cccccccccccceeecccchhHHHhhcChhHhhhhHHHHHHHh
Q psy1512 530 AVKRLQKYKRTPLEKGISPSPFPGNR-RTASVRSVGYSDLFVLSKTDMWDVLKEYPAARVRLESIAVKRL 598 (679)
Q Consensus 530 ~~~~~~~~~~~~~~~g~~~~~~~~~~-r~atv~A~~~~~l~~L~r~~f~~il~~~P~~~~~l~~~~~~rl 598 (679)
...-.....|+..+..+++.+.| +.++++|.++|+++.|++++|.+++.++|++...+...+.+++
T Consensus 72 ---~~~~~~~~~g~~~G~~~~~~~~~~~~~~~~a~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~l~~~l 138 (227)
T 3dkw_A 72 ---EKILEVTNERNTFAEAMMFMDTPNYVATAQAVVPSQLFRFSNKAYLRQLQDNTPLALALLAKLSTRL 138 (227)
T ss_dssp ---CBCCCEECTTEEESCTTTTTTCSBCSSCEEESSCCEEEEEESHHHHHHHSSCTHHHHHHHHHHHHHH
T ss_pred ---EEEEEEcCCCCEeeeHHhcCCCCCCceEEEEcCcEEEEEEeHHHHHHHHHHCHHHHHHHHHHHHHHH
Confidence 00001122334334456678888 9999999999999999999999999999999887776655533
No 32
>3pna_A CAMP-dependent protein kinase type I-alpha regula subunit; beta-barrel, CAMP-binding, catalytic subunit, transferase; HET: CMP; 1.50A {Bos taurus} PDB: 3fhi_B* 3iia_A 3plq_A* 1u7e_B* 3pvb_B*
Probab=98.94 E-value=2.2e-11 Score=112.80 Aligned_cols=121 Identities=12% Similarity=0.182 Sum_probs=94.3
Q ss_pred HHhhhhhhccccccccCChhHHHHHHHhccceEeCCCCEEEEeCCeeeeEEEEeeeeEEEEEehhhHHHHHhhChhHHHH
Q psy1512 446 INVHLDTLKRVEIFQNTEAGFLCELVLRLRPVLFSPGDYICRKGNRRTASVRSVGYSDLFVLSKTDMWDVLKEYPAARVR 525 (679)
Q Consensus 446 ~~~~~~~l~~i~lF~~~~~~~l~~L~~~l~~~~~~pge~I~~~Gd~r~asv~a~~~~~ly~I~~g~~~~vl~~~p~~~~~ 525 (679)
.+...++|+++|+|++++++.+..++..++.+.|.+|++|+++||+ .+.+|+|.+|.+..... +
T Consensus 33 ~~~~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~---------~~~~y~i~~G~v~~~~~------~- 96 (154)
T 3pna_A 33 MAALAKAIEKNVLFSHLDDNERSDIFDAMFPVSFIAGETVIQQGDE---------GDNFYVIDQGEMDVYVN------N- 96 (154)
T ss_dssp HHHHHHHHHHCGGGTTCCHHHHHHHHHHCEEEEECTTCEEECTTSC---------CCEEEEEEESCEEEEET------T-
T ss_pred HHHHHHHHHhChhhhhCCHHHHHHHHHhceEEEECCCCEEEeCCCC---------CCeEEEEEecEEEEEEC------C-
Confidence 3445778999999999999999999999999999999999999998 78999998886543210 0
Q ss_pred HHHHHHHHHhhhccCcccCCCCCCCCCCCCcccccccccccceeecccchhHHHhhcChhHhhhh
Q psy1512 526 LESIAVKRLQKYKRTPLEKGISPSPFPGNRRTASVRSVGYSDLFVLSKTDMWDVLKEYPAARVRL 590 (679)
Q Consensus 526 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~r~atv~A~~~~~l~~L~r~~f~~il~~~P~~~~~l 590 (679)
... .....++..+..+++.+.++.++++|.++|+++.|++++|.++++++|..+..+
T Consensus 97 -------~~~-~~~~~G~~fGe~~~~~~~~~~~~v~A~~~~~~~~i~~~~~~~ll~~~~~~~~~~ 153 (154)
T 3pna_A 97 -------EWA-TSVGEGGSFGELALIYGTPRAATVKAKTNVKLWGIDRDSYRRILMGSTLRKRKM 153 (154)
T ss_dssp -------EEE-EEECTTCEECCHHHHHCCCCSSEEEESSCEEEEEEEHHHHHHHTHHHHHHC---
T ss_pred -------EEE-EEecCCCEeeehHhhcCCCcceEEEECcceEEEEEeHHHHHHHHHhChHHHhhc
Confidence 000 112233333334556788999999999999999999999999999999877654
No 33
>3ouf_A Potassium channel protein; ION channel, membrane, membrane protein; 1.55A {Bacillus cereus} PDB: 3t4z_A 3tcu_A 3t1c_A 3tet_A 3t4d_A 3t2m_A 3e86_A 3e83_A 3e89_A 3e8b_A 3e8f_A 3e8g_A 3e8h_A 3k0d_A 3k0g_A 3k06_A 3k08_A 3k04_A 3k03_A
Probab=98.92 E-value=7.3e-09 Score=87.58 Aligned_cols=80 Identities=19% Similarity=0.348 Sum_probs=65.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCcccCCCCCchhhhhhHHHHHHHHHHhhccc--CCcCCCCchhHHHHHHH
Q psy1512 233 SSLIHYLLVIFHWNGCLYHIIYKNDGFGSRNWVYGDSDTTDVVKQYLQSYYWCTLALTTIG--DLPRPRSKGEYFFVIVQ 310 (679)
Q Consensus 233 ~~l~~~~l~~~H~~aCl~~~i~~~~~~~~~~Wi~~~~~~~~~~~~Y~~slywa~~tlttvG--di~~p~t~~e~i~~i~~ 310 (679)
+..++.++++..+.+++.|..... | .|.+|+||+++|+||+| |+ .|.|..+++++++.
T Consensus 7 ~~~~~~~~~~~~~~g~~~~~~~e~-------~------------~~~~a~yf~~~T~tTvGyGdi-~P~t~~gr~~~~~~ 66 (97)
T 3ouf_A 7 FQVLFVLTILTLISGTIFYSTVEG-------L------------RPIDALYFSVVTLTTVGYGDF-SPQTDFGKIFTILY 66 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSC-------C------------CHHHHHHHHHHHHTTCCCCSS-CCCSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcC-------C------------CHHHHHHHHHHHHHccCCCCC-CCCCccHHHHHHHH
Confidence 344555666667777777754321 2 58999999999999998 99 69999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q psy1512 311 LLFGLLLFATVLGHVANIVTSV 332 (679)
Q Consensus 311 ~i~G~~~~a~~ig~i~~ii~~~ 332 (679)
+++|+.+++++++.++..++..
T Consensus 67 ~~~G~~~~~~~i~~i~~~~~~~ 88 (97)
T 3ouf_A 67 IFIGIGLVFGFIHKLAVNVQLP 88 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHTHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhHH
Confidence 9999999999999999887653
No 34
>3dv8_A Transcriptional regulator, CRP/FNR family; cyclic nucleotide-binding domain, structural genomics, joint for structural genomics; 2.55A {Eubacterium rectale atcc 33656}
Probab=98.91 E-value=1.4e-10 Score=114.00 Aligned_cols=129 Identities=8% Similarity=0.094 Sum_probs=97.1
Q ss_pred hhhccccccccCChhHHHHHHHhccceEeCCCCEEEEeCCeeeeEEEEeeeeEEEEEehhhHHHHHhhChhHHHHHHHHH
Q psy1512 451 DTLKRVEIFQNTEAGFLCELVLRLRPVLFSPGDYICRKGNRRTASVRSVGYSDLFVLSKTDMWDVLKEYPAARVRLESIA 530 (679)
Q Consensus 451 ~~l~~i~lF~~~~~~~l~~L~~~l~~~~~~pge~I~~~Gd~r~asv~a~~~~~ly~I~~g~~~~vl~~~p~~~~~~~~~~ 530 (679)
++++++|+|++++++.+..+...++.+.|.+|++|+++||+ .+.+|+|.+|.+...... + .|.
T Consensus 3 ~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~---------~~~~y~i~~G~v~~~~~~-~--~G~----- 65 (220)
T 3dv8_A 3 SFENYFPLWNDLNTAQKKLISDNLITQHVKKGTIIHNGNMD---------CTGLLLVKSGQLRTYILS-D--EGR----- 65 (220)
T ss_dssp --CCSCGGGGTSCHHHHHHHHTTCEEEEECTTCEEEEGGGC---------CCEEEEEEESCEEEEEEC-T--TSC-----
T ss_pred chHHhChhhhcCCHHHHHHHHhhCceEEeCCCCEEECCCCC---------cceEEEEEeceEEEEEEC-C--CCC-----
Confidence 57899999999999999999999999999999999999998 788999988855322100 0 000
Q ss_pred HHHHhhhccCcccC--CCCCCCCCCCCcccccccccccceeecccchhHHHhhcChhHhhhhHHHHHHHh
Q psy1512 531 VKRLQKYKRTPLEK--GISPSPFPGNRRTASVRSVGYSDLFVLSKTDMWDVLKEYPAARVRLESIAVKRL 598 (679)
Q Consensus 531 ~~~~~~~~~~~~~~--g~~~~~~~~~~r~atv~A~~~~~l~~L~r~~f~~il~~~P~~~~~l~~~~~~rl 598 (679)
...-.....|+. .+..+++.+.|+.++++|.++|+++.|++++|.+++.++|++...+...+.+++
T Consensus 66 --~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~a~~~~~~~~i~~~~~~~l~~~~p~~~~~~~~~l~~~l 133 (220)
T 3dv8_A 66 --EITLYRLFDMDMCLLSASCIMRSIQFEVTIEAEKDTDLWIIPAEIYKGIMKDSAPVANYTNELMATRF 133 (220)
T ss_dssp --EEEEEEECTTCEESGGGGGGCTTCCCCCEEEESSCEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred --EEEEEecCCCCeeehhHHHHhCCCCCceEEEEeeeeEEEEEEHHHHHHHHHHCHHHHHHHHHHHHHHH
Confidence 000011122333 133456788899999999999999999999999999999999988877665544
No 35
>3e97_A Transcriptional regulator, CRP/FNR family; YP_604437.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.86A {Deinococcus geothermalis dsm 11300}
Probab=98.90 E-value=1.2e-10 Score=115.60 Aligned_cols=131 Identities=18% Similarity=0.165 Sum_probs=100.8
Q ss_pred hhhhccccccccCChhHHHHHHHhccceEeCCCCEEEEeCCeeeeEEEEeeeeEEEEEehhhHHHHHhhChhHHHHHHHH
Q psy1512 450 LDTLKRVEIFQNTEAGFLCELVLRLRPVLFSPGDYICRKGNRRTASVRSVGYSDLFVLSKTDMWDVLKEYPAARVRLESI 529 (679)
Q Consensus 450 ~~~l~~i~lF~~~~~~~l~~L~~~l~~~~~~pge~I~~~Gd~r~asv~a~~~~~ly~I~~g~~~~vl~~~p~~~~~~~~~ 529 (679)
.++|+++|+|++++++.+..++..++.+.|.+|++|+++||+ .+.+|+|.+|.+...... + .|.
T Consensus 5 ~~~L~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~---------~~~~y~i~~G~v~~~~~~-~--~g~---- 68 (231)
T 3e97_A 5 LDDLKRSPLFQNVPEDAMREALKVVTERNFQPDELVVEQDAE---------GEALHLVTTGVVRVSRVS-L--GGR---- 68 (231)
T ss_dssp HHHHHTSGGGTTCCHHHHHHHHHTEEEEEECTTCBCCCTTCT---------TTCEEEECSSEEEEEEEC-C----C----
T ss_pred HHHHhcChhhccCCHHHHHHHHHhcEEEEECCCCEEEeCCCC---------CCeEEEEEecEEEEEEEC-C--CCc----
Confidence 467899999999999999999999999999999999999998 678999977754321110 0 000
Q ss_pred HHHHHhhhccCcccCCCCCCCCCCCCcccccccccccceeecccchhHHHhhcChhHhhhhHHHHHHHhh
Q psy1512 530 AVKRLQKYKRTPLEKGISPSPFPGNRRTASVRSVGYSDLFVLSKTDMWDVLKEYPAARVRLESIAVKRLQ 599 (679)
Q Consensus 530 ~~~~~~~~~~~~~~~g~~~~~~~~~~r~atv~A~~~~~l~~L~r~~f~~il~~~P~~~~~l~~~~~~rl~ 599 (679)
...-.....++..+..+++.+.|+.++++|.++|+++.|++++|.+++.++|++...+...+.+++.
T Consensus 69 ---~~~~~~~~~g~~~G~~~~~~~~~~~~~~~a~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~l~~~l~ 135 (231)
T 3e97_A 69 ---ERVLGDIYAPGVVGETAVLAHQERSASVRALTPVRTLMLHREHFELILRRHPRVLWNLAEMLARRVT 135 (231)
T ss_dssp ---EEEEEEEESSEEESTTTTTCCCCCCEEEEESSCEEEEEECHHHHHHHHHHCHHHHHHHHHHHHHHHH
T ss_pred ---eEEEEecCCCCEEeeHHHhCCCCceEEEEECCcEEEEEEeHHHHHHHHHHCHHHHHHHHHHHHHHHH
Confidence 0000112233433445677889999999999999999999999999999999999888777666544
No 36
>1wgp_A Probable cyclic nucleotide-gated ION channel 6; cyclic nucleotide monophosphate, CNMP, CNMP-binding, structural genomics; NMR {Arabidopsis thaliana} SCOP: b.82.3.2
Probab=98.90 E-value=4.8e-11 Score=107.99 Aligned_cols=120 Identities=16% Similarity=0.236 Sum_probs=89.5
Q ss_pred hhhhccccccccCChhHHHHHHHhccceEeCCCCEEEEeCCeeeeEEEEeeeeEEEEEehhhHHHHHhhChhHHHHHHHH
Q psy1512 450 LDTLKRVEIFQNTEAGFLCELVLRLRPVLFSPGDYICRKGNRRTASVRSVGYSDLFVLSKTDMWDVLKEYPAARVRLESI 529 (679)
Q Consensus 450 ~~~l~~i~lF~~~~~~~l~~L~~~l~~~~~~pge~I~~~Gd~r~asv~a~~~~~ly~I~~g~~~~vl~~~p~~~~~~~~~ 529 (679)
.++|+++|+|++++++.+..++..++.+.|.+|++|+++||+ .+.+|+|.+|.+. +. ..++ |.
T Consensus 5 ~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~---------~~~~y~i~~G~v~-~~-~~~~--g~---- 67 (137)
T 1wgp_A 5 SSGVRRVPLFENMDERLLDAICERLKPCLFTEKSYLVREGDP---------VNEMLFIIRGRLE-SV-TTDG--GR---- 67 (137)
T ss_dssp SCSCSSCSGGGSCCHHHHHHHHHHCBCCCBCTTEEEECTTSB---------CSEEEEEEECCCE-EE-CCSS--CS----
T ss_pred HHHHHcCcchhhCCHHHHHHHHHHheEEEeCCCCEEEeCCCC---------CCeEEEEEeeEEE-EE-EcCC--Cc----
Confidence 457899999999999999999999999999999999999998 7899999888765 21 1110 00
Q ss_pred HHHHHhhh--ccCcccCCCCCC---CCCCC------CcccccccccccceeecccchhHHHhhcChhHhhh
Q psy1512 530 AVKRLQKY--KRTPLEKGISPS---PFPGN------RRTASVRSVGYSDLFVLSKTDMWDVLKEYPAARVR 589 (679)
Q Consensus 530 ~~~~~~~~--~~~~~~~g~~~~---~~~~~------~r~atv~A~~~~~l~~L~r~~f~~il~~~P~~~~~ 589 (679)
...-. ....++..+..+ .+.+. +++++++|.++|+++.|++++|.++++++|+++.+
T Consensus 68 ---~~~~~~~~l~~G~~fGe~~l~~~~~~~~~~~~~~~~~~~~A~~~~~~~~i~~~~~~~l~~~~p~l~~k 135 (137)
T 1wgp_A 68 ---SGFYNRSLLKEGDFCGDELLTWALDPKSGSNLPSSTRTVKALTEVEAFALIADELKFVASQFRRSGPS 135 (137)
T ss_dssp ---SSSSCEEECCTTCBSSTHHHHHHHCSSCCSSSCBCSSEEEESSCBEEEEEEHHHHHHHHHHHCCCTTT
T ss_pred ---ceeeeeeeecCCCEecHHHHHHHhccccccccccceeEEEEeEEEEEEEECHHHHHHHHHHCHhhHhh
Confidence 00000 112233322223 25555 46899999999999999999999999999987654
No 37
>3d0s_A Transcriptional regulatory protein; CAMP receptor protein (CRP), dimer, inactive(APO, unliganded allostery, DNA binding, cyclic AMP; 2.00A {Mycobacterium tuberculosis} PDB: 3i54_A* 3i59_A* 3mzh_A* 3h3u_A* 3r6s_A*
Probab=98.88 E-value=9.2e-11 Score=116.00 Aligned_cols=132 Identities=20% Similarity=0.248 Sum_probs=99.6
Q ss_pred hhhhccccccccCChhHHHHHHHhccceEeCCCCEEEEeCCeeeeEEEEeeeeEEEEEehhhHHHHHhhChhHHHHHHHH
Q psy1512 450 LDTLKRVEIFQNTEAGFLCELVLRLRPVLFSPGDYICRKGNRRTASVRSVGYSDLFVLSKTDMWDVLKEYPAARVRLESI 529 (679)
Q Consensus 450 ~~~l~~i~lF~~~~~~~l~~L~~~l~~~~~~pge~I~~~Gd~r~asv~a~~~~~ly~I~~g~~~~vl~~~p~~~~~~~~~ 529 (679)
.+.++++|+|++++++.+..++..++.+.|.+|++|+++||+ .+.+|+|.+|.+...... + .|.
T Consensus 5 ~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~---------~~~~y~i~~G~v~~~~~~-~--~g~---- 68 (227)
T 3d0s_A 5 DEILARAGIFQGVEPSAIAALTKQLQPVDFPRGHTVFAEGEP---------GDRLYIIISGKVKIGRRA-P--DGR---- 68 (227)
T ss_dssp HHHHTTSSTTSSCCSSTTHHHHTTSCEEEECTTCEEECTTCC---------CCEEEEEEESCEEEEEEC-T--TSC----
T ss_pred HHHHhcChhhcCCCHHHHHHHHhhCeEEEeCCCCEEEcCCCc---------CCEEEEEEeeEEEEEEEC-C--CCc----
Confidence 456899999999999999999999999999999999999998 778999988865322110 0 000
Q ss_pred HHHHHhhhccCcccCCCCCCCCCCCCcccccccccccceeecccchhHHHhhcChhHhhhhHHHHHHHhhh
Q psy1512 530 AVKRLQKYKRTPLEKGISPSPFPGNRRTASVRSVGYSDLFVLSKTDMWDVLKEYPAARVRLESIAVKRLQK 600 (679)
Q Consensus 530 ~~~~~~~~~~~~~~~g~~~~~~~~~~r~atv~A~~~~~l~~L~r~~f~~il~~~P~~~~~l~~~~~~rl~~ 600 (679)
...-.....++..+..+++.+.|+.++++|.++|+++.|++++|.++++++|++...+...+.+++..
T Consensus 69 ---~~~~~~~~~G~~~G~~~~~~~~~~~~~~~A~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~l~~~l~~ 136 (227)
T 3d0s_A 69 ---ENLLTIMGPSDMFGELSIFDPGPRTSSATTITEVRAVSMDRDALRSWIADRPEISEQLLRVLARRLRR 136 (227)
T ss_dssp ---EEEEEEECTTCEESCHHHHSCSCCSSEEEESSCEEEEEEEHHHHHHTTSSCHHHHHHHHHHHHHHHHH
T ss_pred ---EEEEEEecCCCEEeeHHHcCCCCceeEEEEcccEEEEEEeHHHHHHHHHHChHHHHHHHHHHHHHHHH
Confidence 00000112233323335567889999999999999999999999999999999998887776664443
No 38
>4ava_A Lysine acetyltransferase; allosteric regulation, domain coupling; HET: ACO; 1.70A {Mycobacterium tuberculosis} PDB: 4avb_A* 4avc_A*
Probab=98.88 E-value=1e-10 Score=123.00 Aligned_cols=129 Identities=16% Similarity=0.152 Sum_probs=101.9
Q ss_pred hhhhccccccccCChhHHHHHHHhccceEeCCCCEEEEeCCeeeeEEEEeeeeEEEEEehhhHHHHHhhChhHHHHHHHH
Q psy1512 450 LDTLKRVEIFQNTEAGFLCELVLRLRPVLFSPGDYICRKGNRRTASVRSVGYSDLFVLSKTDMWDVLKEYPAARVRLESI 529 (679)
Q Consensus 450 ~~~l~~i~lF~~~~~~~l~~L~~~l~~~~~~pge~I~~~Gd~r~asv~a~~~~~ly~I~~g~~~~vl~~~p~~~~~~~~~ 529 (679)
.+.|+++|+|++++++.+..++..++.+.|.+|++|+++||+ .+.+|+|.+|.+...... + .|.
T Consensus 12 ~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~---------~~~~y~i~~G~v~~~~~~-~--~g~---- 75 (333)
T 4ava_A 12 VEDLAGMDVFQGCPAEGLVSLAASVQPLRAAAGQVLLRQGEP---------AVSFLLISSGSAEVSHVG-D--DGV---- 75 (333)
T ss_dssp HHHHTTSGGGTTCCHHHHHHHHHHCEEEEECTTCEEECTTSB---------CCCEEEEEECCEEEEEEC-T--TCC----
T ss_pred HHHHhCCHhHhcCCHHHHHHHHhhCeEEEECCCCEEEeCCCc---------CCEEEEEEeeEEEEEEEC-C--CCc----
Confidence 467899999999999999999999999999999999999998 788999988865432111 0 000
Q ss_pred HHHHHhhhccCcccCCCCCCCCCCCCcccccccccccceeecccchhHHHhhcChhHhhhhHHHHHHHhh
Q psy1512 530 AVKRLQKYKRTPLEKGISPSPFPGNRRTASVRSVGYSDLFVLSKTDMWDVLKEYPAARVRLESIAVKRLQ 599 (679)
Q Consensus 530 ~~~~~~~~~~~~~~~g~~~~~~~~~~r~atv~A~~~~~l~~L~r~~f~~il~~~P~~~~~l~~~~~~rl~ 599 (679)
. .-.....++..++.+++.+.||+++++|.++|+++.|++++|.+++ ++|++...+...+.++..
T Consensus 76 ---~-~~~~~~~G~~fGe~~l~~~~~~~~~v~A~~~~~~~~i~~~~~~~l~-~~p~~~~~~~~~~~~~~~ 140 (333)
T 4ava_A 76 ---A-IIARALPGMIVGEIALLRDSPRSATVTTIEPLTGWTGGRGAFATMV-HIPGVGERLLRTARQRLA 140 (333)
T ss_dssp ---E-EEEEECTTCEESHHHHHHTCBCSSEEEESSCEEEEEECHHHHHHHH-HSTTHHHHHHHHHHHHHH
T ss_pred ---E-EEEEecCCCEeeHHHhcCCCCceEEEEEecCEEEEEEcHHHHHHHH-hChHHHHHHHHHHHHHHH
Confidence 0 0011122232233356778999999999999999999999999999 999999999999888777
No 39
>4ev0_A Transcription regulator, CRP family; CAMP binding, winged helix-turn-helix motif, DNA binding, transcription activator; HET: CMP; 2.40A {Thermus thermophilus}
Probab=98.87 E-value=8.7e-11 Score=115.08 Aligned_cols=127 Identities=17% Similarity=0.173 Sum_probs=93.2
Q ss_pred hccccccccCChhHHHHHHHhccceEeCCCCEEEEeCCeeeeEEEEeeeeEEEEEehhhHHHHHhhChhHHHHHHHHHHH
Q psy1512 453 LKRVEIFQNTEAGFLCELVLRLRPVLFSPGDYICRKGNRRTASVRSVGYSDLFVLSKTDMWDVLKEYPAARVRLESIAVK 532 (679)
Q Consensus 453 l~~i~lF~~~~~~~l~~L~~~l~~~~~~pge~I~~~Gd~r~asv~a~~~~~ly~I~~g~~~~vl~~~p~~~~~~~~~~~~ 532 (679)
|+++|+|++++++.+..++..++.+.|.+|++|+++||+ .+.+|+|.+|.+...... ++ |.
T Consensus 1 L~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~---------~~~~y~i~~G~v~~~~~~-~~--g~------- 61 (216)
T 4ev0_A 1 MKGSPLFHGLAPEEVDLALSYFQRRLYPQGKPIFYQGDL---------GQALYLVASGKVRLFRTH-LG--GQ------- 61 (216)
T ss_dssp ---CGGGTTCCHHHHHHHHTTCEEEEECTTCEEECTTCB---------CCEEEEEEESCEEEEEEC-SS--SC-------
T ss_pred CCCChhhcCCCHHHHHHHHHhheEEEeCCCCEEEeCCCC---------CCEEEEEEeCEEEEEEEC-CC--CC-------
Confidence 468999999999999999999999999999999999998 789999988854322110 00 00
Q ss_pred HHhhhccCcccCCCCCCCCCCCCcccccccccccceeecccchhHHHhhcChhHhhhhHHHHHHHh
Q psy1512 533 RLQKYKRTPLEKGISPSPFPGNRRTASVRSVGYSDLFVLSKTDMWDVLKEYPAARVRLESIAVKRL 598 (679)
Q Consensus 533 ~~~~~~~~~~~~g~~~~~~~~~~r~atv~A~~~~~l~~L~r~~f~~il~~~P~~~~~l~~~~~~rl 598 (679)
...-.....++..+..+++.+.|+.++++|.++|+++.|++++|.+++.++|++...+...+.+++
T Consensus 62 ~~~~~~~~~g~~~G~~~~~~~~~~~~~~~a~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~l~~~~ 127 (216)
T 4ev0_A 62 ERTLALLGPGELFGEMSLLDEGERSASAVAVEDTELLALFREDYLALIRRLPLVAHNLAALLARRL 127 (216)
T ss_dssp EEEEEEECTTCEECHHHHHHCCBCSSEEEESSSEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred EEEEEEecCCCEEeehhhcCCCCcceEEEEcCCEEEEEEcHHHHHHHHHHCcHHHHHHHHHHHHHH
Confidence 000001112222222345668899999999999999999999999999999999887777665543
No 40
>3shr_A CGMP-dependent protein kinase 1; cyclic nucleotide binding domains, cyclic nucleotide protein transferase, PKG; HET: CMP; 2.50A {Bos taurus}
Probab=98.87 E-value=2.1e-10 Score=118.49 Aligned_cols=137 Identities=18% Similarity=0.150 Sum_probs=106.3
Q ss_pred HhhhhhhccccccccCChhHHHHHHHhccceEeCCCCEEEEeCCeeeeEEEEeeeeEEEEEehhhHHHHHhhChhHHHHH
Q psy1512 447 NVHLDTLKRVEIFQNTEAGFLCELVLRLRPVLFSPGDYICRKGNRRTASVRSVGYSDLFVLSKTDMWDVLKEYPAARVRL 526 (679)
Q Consensus 447 ~~~~~~l~~i~lF~~~~~~~l~~L~~~l~~~~~~pge~I~~~Gd~r~asv~a~~~~~ly~I~~g~~~~vl~~~p~~~~~~ 526 (679)
.....+++++++|++++++.+..++..++.+.|.+|++|+++||+ .+.+|+|.+|.+.......++ |.
T Consensus 153 ~~~~~~l~~~~~f~~l~~~~l~~l~~~~~~~~~~~g~~I~~~G~~---------~~~~yiI~~G~v~~~~~~~~~--g~- 220 (299)
T 3shr_A 153 TEYMEFLKSVPTFQSLPEEILSKLADVLEETHYENGEYIIRQGAR---------GDTFFIISKGKVNVTREDSPN--ED- 220 (299)
T ss_dssp HHHHHHHTTSHHHHHSCHHHHHHHTTTCEEEEECTTCEEECTTCE---------ECEEEEEEESEEEEEECCSSS--CC-
T ss_pred HHHHHHHhhCHHhhhCCHHHHHHHHHhccEEEECCCCEEEeCCCC---------CCEEEEEEeeEEEEEEecCCC--Cc-
Confidence 345678899999999999999999999999999999999999998 789999988865432211000 00
Q ss_pred HHHHHHHHhhhccCcccCCCCCCCCCCCCcccccccccccceeecccchhHHHhhcChhHhhhhHHHHHHHhhhc
Q psy1512 527 ESIAVKRLQKYKRTPLEKGISPSPFPGNRRTASVRSVGYSDLFVLSKTDMWDVLKEYPAARVRLESIAVKRLQKY 601 (679)
Q Consensus 527 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~r~atv~A~~~~~l~~L~r~~f~~il~~~P~~~~~l~~~~~~rl~~~ 601 (679)
...-.....|+..+..+++.+.||+++|+|.++|+++.|++++|.++++++|+....+.+.+.+|++..
T Consensus 221 ------~~~~~~l~~G~~fGe~~ll~~~~~~~tv~a~~~~~l~~i~~~~f~~ll~~~p~~~~~~~~~l~~r~~~~ 289 (299)
T 3shr_A 221 ------PVFLRTLGKGDWFGEKALQGEDVRTANVIAAEAVTCLVIDRDSFKHLIGGLDDVSNKAYEDAEAKAKYE 289 (299)
T ss_dssp ------CEEEEEEETTCEECGGGGSSSEECSSEEEESSSEEEEEEEHHHHHHHHTTCCCCCHHHHHHHHHHHHHH
T ss_pred ------ceEEEEcCCCCEeChHHHhCCCCcceEEEECCCEEEEEEeHHHHHHHHccHHHHHHHHHHHHhhhhhcc
Confidence 000011223333333467788999999999999999999999999999999999999999888876643
No 41
>1zyb_A Transcription regulator, CRP family; NP_813211.1, structural genomics, joint center for structura genomics, JCSG; 2.15A {Bacteroides thetaiotaomicron} SCOP: a.4.5.4 b.82.3.2
Probab=98.86 E-value=3.7e-10 Score=112.22 Aligned_cols=132 Identities=20% Similarity=0.128 Sum_probs=99.9
Q ss_pred hhhhccccccccCChhHHHHHHHh--ccceEeCCCCEEEEeCCeeeeEEEEeeeeEEEEEehhhHHHHHhhChhHHHHHH
Q psy1512 450 LDTLKRVEIFQNTEAGFLCELVLR--LRPVLFSPGDYICRKGNRRTASVRSVGYSDLFVLSKTDMWDVLKEYPAARVRLE 527 (679)
Q Consensus 450 ~~~l~~i~lF~~~~~~~l~~L~~~--l~~~~~~pge~I~~~Gd~r~asv~a~~~~~ly~I~~g~~~~vl~~~p~~~~~~~ 527 (679)
...++++|+|++++++.+..++.. ++.+.|.+|++|+++||+ .+.+|+|.+|.+...... + .|.
T Consensus 17 ~~~l~~~~lf~~l~~~~~~~l~~~~~~~~~~~~~ge~i~~~G~~---------~~~~y~i~~G~v~~~~~~-~--~G~-- 82 (232)
T 1zyb_A 17 FDTLLQLPLFQGLCHEDFTSILDKVKLHFIKHKAGETIIKSGNP---------CTQLCFLLKGEISIVTNA-K--ENI-- 82 (232)
T ss_dssp HTTGGGSGGGTTCCHHHHHHHHHTSCCEEEEECTTCEEECTTSB---------CCEEEEEEESEEEEEEEC-G--GGS--
T ss_pred HHHHhcCccccCCCHHHHHHHHhhCCcEEEEECCCCEEECCCCc---------ccEEEEEEeeEEEEEEEC-C--CCC--
Confidence 567899999999999999999998 999999999999999998 778999988754321100 0 000
Q ss_pred HHHHHHHhhhccCcccCCCCCCCCCCCC-cccccccccccceeecccchhHHHhhcChhHhhhhHHHHHHHhhh
Q psy1512 528 SIAVKRLQKYKRTPLEKGISPSPFPGNR-RTASVRSVGYSDLFVLSKTDMWDVLKEYPAARVRLESIAVKRLQK 600 (679)
Q Consensus 528 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~-r~atv~A~~~~~l~~L~r~~f~~il~~~P~~~~~l~~~~~~rl~~ 600 (679)
...-.....|+..+..+++.+.+ +.++++|.++|+++.|++++|.++++++|++...+...+.+++..
T Consensus 83 -----~~~l~~~~~G~~fG~~~~~~~~~~~~~~~~A~~~~~v~~i~~~~~~~l~~~~p~~~~~l~~~l~~~l~~ 151 (232)
T 1zyb_A 83 -----YTVIEQIEAPYLIEPQSLFGMNTNYASSYVAHTEVHTVCISKAFVLSDLFRYDIFRLNYMNIVSNRAQN 151 (232)
T ss_dssp -----CEEEEEEESSEEECGGGGSSSCCBCSSEEEESSCEEEEEEEHHHHHHTGGGSHHHHHHHHHHHHHHHHH
T ss_pred -----EEEEEEccCCCeeeehHHhCCCCCCceEEEEccceEEEEEEHHHHHHHhccCHHHHHHHHHHHHHHHHH
Confidence 00000112333333345667777 999999999999999999999999999999999888877665443
No 42
>3dn7_A Cyclic nucleotide binding regulatory protein; structural genomics, APC88869, cyclic nucleotide binding REG protein, PSI-2; 1.80A {Cytophaga hutchinsonii}
Probab=98.84 E-value=1e-10 Score=112.62 Aligned_cols=133 Identities=8% Similarity=-0.030 Sum_probs=99.2
Q ss_pred hhhhccccccccCChhHHHHHHHhccceEeCCCCEEEEeCCeeeeEEEEeeeeEEEEEehhhHHHHHhhChhHHHHHHHH
Q psy1512 450 LDTLKRVEIFQNTEAGFLCELVLRLRPVLFSPGDYICRKGNRRTASVRSVGYSDLFVLSKTDMWDVLKEYPAARVRLESI 529 (679)
Q Consensus 450 ~~~l~~i~lF~~~~~~~l~~L~~~l~~~~~~pge~I~~~Gd~r~asv~a~~~~~ly~I~~g~~~~vl~~~p~~~~~~~~~ 529 (679)
..++++++.|.+++++.+..+...++.+.|.+|++|+++||+ .+.+|+|.+|.+...... + .|.
T Consensus 6 ~~l~~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~l~~~G~~---------~~~~y~i~~G~v~~~~~~-~--~G~---- 69 (194)
T 3dn7_A 6 TALINHIRKFIFLTDEDAGTLSAFFQLKKVRKKETLLKTGEI---------CRINYFVVKGCLRLFFID-E--KGI---- 69 (194)
T ss_dssp HHHHHHHHTTSCCCHHHHHHHHTTCEEEEECTTCEEECTTSB---------CCEEEEEEESEEEEEEEC-T--TSC----
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHhCEEEEEcCCCEEECCCCe---------eeEEEEeecCeEEEEEEC-C--CCC----
Confidence 456788999999999999999999999999999999999998 788999977754221100 0 000
Q ss_pred HHHHHhhhccCcccC-CCCCCCCCCCCcccccccccccceeecccchhHHHhhcChhHhhhhHHHHHHHhhhc
Q psy1512 530 AVKRLQKYKRTPLEK-GISPSPFPGNRRTASVRSVGYSDLFVLSKTDMWDVLKEYPAARVRLESIAVKRLQKY 601 (679)
Q Consensus 530 ~~~~~~~~~~~~~~~-g~~~~~~~~~~r~atv~A~~~~~l~~L~r~~f~~il~~~P~~~~~l~~~~~~rl~~~ 601 (679)
+ ..-.....|+. |...+++.+.|+.++++|.++|+++.|++++|.+++.++|++...+...+.+++...
T Consensus 70 --e-~~~~~~~~g~~~ge~~~~~~~~~~~~~~~a~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~~~~~l~~~ 139 (194)
T 3dn7_A 70 --E-QTTQFAIENWWLSDYMAFQKQQPADFYIQSVENCELLSITYTEQENLFERIPALERYFRLVYQKSFAAA 139 (194)
T ss_dssp --E-EEEEEEETTCEECCHHHHHHTCBCSSEEEESSCEEEEEEEHHHHHHHHHHCTTHHHHHHHHHHHHHHHH
T ss_pred --E-EEEEEccCCcEEeehHHHhcCCCCceEEEEECCEEEEEEeHHHHHHHHHhCHHHHHHHHHHHHHHHHHH
Confidence 0 00000112222 222345678899999999999999999999999999999999988887776655443
No 43
>3fx3_A Cyclic nucleotide-binding protein; helix_TURN_helix, CAMP regulatory protein, structural genomi 2, protein structure initiative; 2.20A {Ruegeria pomeroyi} PDB: 3h3z_A*
Probab=98.83 E-value=1e-10 Score=116.42 Aligned_cols=133 Identities=8% Similarity=0.015 Sum_probs=99.1
Q ss_pred hhhhhccccccccCChhHHHHHHHhccceEeCCCCEEEEeCCeeeeEEEEeeeeEEEEEehhhHHHHHhhChhHHHHHHH
Q psy1512 449 HLDTLKRVEIFQNTEAGFLCELVLRLRPVLFSPGDYICRKGNRRTASVRSVGYSDLFVLSKTDMWDVLKEYPAARVRLES 528 (679)
Q Consensus 449 ~~~~l~~i~lF~~~~~~~l~~L~~~l~~~~~~pge~I~~~Gd~r~asv~a~~~~~ly~I~~g~~~~vl~~~p~~~~~~~~ 528 (679)
..+.|+++|+|++++++.+..++..++.+.|.+|++|+++||+ .+.+|+|.+|.+...... + .|.
T Consensus 9 ~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~---------~~~~y~i~~G~v~~~~~~-~--~G~--- 73 (237)
T 3fx3_A 9 QKAIARNSLLIRSLPEQHVDALLSQAVWRSYDRGETLFLQEEK---------AQAIHVVIDGWVKLFRMT-P--TGS--- 73 (237)
T ss_dssp HHHHHTTSHHHHTSCHHHHHHHHTTCEEEEECTTCEEECTTSC---------CCEEEEEEESEEEEEEEC-T--TSC---
T ss_pred HHHHHhCCHhhccCCHHHHHHHHhhCEEEEECCCCEEEcCCCc---------cceEEEEEeeEEEEEEEC-C--CCC---
Confidence 3567999999999999999999999999999999999999998 778999988754322110 0 000
Q ss_pred HHHHHHhhhccCcccCCCCCCCCCCCCcccccccccccceeecccchhHHHhhcChhHhhhhHHHHHHHhhh
Q psy1512 529 IAVKRLQKYKRTPLEKGISPSPFPGNRRTASVRSVGYSDLFVLSKTDMWDVLKEYPAARVRLESIAVKRLQK 600 (679)
Q Consensus 529 ~~~~~~~~~~~~~~~~g~~~~~~~~~~r~atv~A~~~~~l~~L~r~~f~~il~~~P~~~~~l~~~~~~rl~~ 600 (679)
...-.....|+..+..+++.+.|+.++++|.++|+++.|++++|.+++.++|++...+...+.+++..
T Consensus 74 ----~~~~~~~~~G~~~G~~~~~~~~~~~~~~~a~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~l~~~l~~ 141 (237)
T 3fx3_A 74 ----EAVVSVFTRGESFGEAVALRNTPYPVSAEAVTPCEVMHIPSPVFVSLMRRDPEICISILATTFGHLHS 141 (237)
T ss_dssp ----EEEEEEEETTEEECHHHHHHTCCCSSEEEESSSEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHHHHHH
T ss_pred ----EEEEEEeCCCCEechHHHhcCCCCCceEEECCceEEEEEcHHHHHHHHHHCHHHHHHHHHHHHHHHHH
Confidence 00000111222222233456789999999999999999999999999999999998887776664433
No 44
>3ldc_A Calcium-gated potassium channel MTHK; transmembrane, ION channel, open conformation, IO transport; 1.45A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3lde_A 4hyo_A 4hz3_D 3r65_A 3ous_A 3ldd_A
Probab=98.82 E-value=2.3e-08 Score=81.70 Aligned_cols=52 Identities=21% Similarity=0.541 Sum_probs=49.1
Q ss_pred hhHHHHHHHHHHhhccc--CCcCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1512 277 QYLQSYYWCTLALTTIG--DLPRPRSKGEYFFVIVQLLFGLLLFATVLGHVANIV 329 (679)
Q Consensus 277 ~Y~~slywa~~tlttvG--di~~p~t~~e~i~~i~~~i~G~~~~a~~ig~i~~ii 329 (679)
.|.+|+||+++|+||+| |+ .|.|..+++++++.+++|+.++++.++.+++.+
T Consensus 28 ~~~~a~yf~~~T~tTvGyGdi-~P~t~~~r~~~~~~~~~G~~~~~~~~~~i~~~l 81 (82)
T 3ldc_A 28 SWTVSLYWTFVTIATVGYGDY-SPHTPLGMYFTCTLIVLGIGTFAVAVERLLEFL 81 (82)
T ss_dssp CHHHHHHHHHHHHTTCCCCSS-CCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhcccCCCCC-CCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 58899999999999997 99 699999999999999999999999999998865
No 45
>4dxw_A Navrh, ION transport protein; tetrameric, voltage-gated sodium channel, sodium selective, gated ION channel; HET: BNG PX4; 3.05A {Alpha proteobacterium HIMB114}
Probab=98.76 E-value=1.6e-08 Score=100.18 Aligned_cols=206 Identities=16% Similarity=0.182 Sum_probs=106.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhcccccccchhhHHHHHHHHHHHHHHHHHhhheeEEEECCeEeeCHHHHHHHHhcCCC
Q psy1512 99 YYWSMIVSLAFLYNFWVIIYRFAFQEINRESLVIWFCLDYMADLMYVIDILIHFRTGYLEDGVLQTDSTKLRDHYMNSTT 178 (679)
Q Consensus 99 ~~W~~i~~~~~~~~~~~ip~~~~F~~~~~~~~~~~~~~~~i~d~~f~~Di~l~f~t~y~~~g~~v~d~~~I~~~Ylks~~ 178 (679)
..++.++.++++.+++....+. .+ .+.........+|.++-++|.+|+++++... .-.++|.+++|
T Consensus 12 ~~f~~~i~~~I~ln~i~l~~~~-~~-~~~~~~~~l~~~e~~~~~iF~~E~~lri~~~------------~~~~~y~~~~w 77 (229)
T 4dxw_A 12 RIFQFTVVSIIILNAVLIGATT-YE-LDPLFLETIHLLDYGITIFFVIEILIRFIGE------------KQKADFFKSGW 77 (229)
T ss_dssp HHHHHHHHHHHHHHHHSTTTCC-SS-SCHHHHHHHHHHHHHHHHHHHHHHHHHHHC---------------------CHH
T ss_pred chHHHHHHHHHHHHHHHHHHcc-CC-CChHHHHHHHHHHHHHHHHHHHHHHHHHHHc------------CchhHHhcCCc
Confidence 4678888888888877754432 11 2222223345789999999999999998754 12468999999
Q ss_pred ceehhhhccchHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhhhhhcc--chhHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy1512 179 FYIDCLCLLPLDFLYLSIGFNSILRLFRLVKIYRFWAFMDRTERHTN--YPNLFRSSSLIHYLLVIFHWNGCLYHIIYKN 256 (679)
Q Consensus 179 f~~Dlls~lP~~~~~~~~~~~~~lrl~rllrl~rl~~~~~~~~~~~~--~~~~~~~~~l~~~~l~~~H~~aCl~~~i~~~ 256 (679)
.++|++.++|...-.........+|++|++|++|+.+..+.++.... ....-.+..+...++++.-.+|++-+.+...
T Consensus 78 ni~D~~~v~~~~i~~~~~~~~~~lr~~RilR~lrl~~~~~~l~~l~~~l~~s~~~l~~~~~~l~~~~~ifa~~g~~lf~~ 157 (229)
T 4dxw_A 78 NIFDTVIVAISLIPIPNNSSFLVLRLLRIFRVLRLISVIPELKQIIEAILESVRRVFFVSLLLFIILYIYATMGAILFGN 157 (229)
T ss_dssp HHHHHHHHHHTTCC--------CCTTHHHHHHTTHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHhhcCccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 99997666553211111111122344455544444444433322111 1111223333334444444445433322211
Q ss_pred CCCCCCCcccCCCCCchhhhhhHHHHHHHHHHhhccc--CCcC---CCCchhH-HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1512 257 DGFGSRNWVYGDSDTTDVVKQYLQSYYWCTLALTTIG--DLPR---PRSKGEY-FFVIVQLLFGLLLFATVLGHVANIVT 330 (679)
Q Consensus 257 ~~~~~~~Wi~~~~~~~~~~~~Y~~slywa~~tlttvG--di~~---p~t~~e~-i~~i~~~i~G~~~~a~~ig~i~~ii~ 330 (679)
. +.+.++....|++|.+.++|+.| |+.. ..+.... .+..++.+.+.++...+++.+.+-++
T Consensus 158 ~-------------~~~~F~~~~~a~~~lf~~~t~~~w~~i~~~~~~~~~~~~~~f~~~~~i~~~i~lNlfiavi~~~f~ 224 (229)
T 4dxw_A 158 D-------------DPSRWGDLGISLITLFQVLTLSSWETVMLPMQEIYWWSWVYFFSFIIICSITILNLVIAILVDVVI 224 (229)
T ss_dssp T-------------SCTTTSSHHHHHHHHHHHHTTSSTHHHHHHHHTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred C-------------CcccccCHHHHHHHHHHHHccCCHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 11236789999999999999987 4311 1122233 34445555556677777776666554
Q ss_pred H
Q psy1512 331 S 331 (679)
Q Consensus 331 ~ 331 (679)
+
T Consensus 225 ~ 225 (229)
T 4dxw_A 225 Q 225 (229)
T ss_dssp T
T ss_pred H
Confidence 3
No 46
>2gau_A Transcriptional regulator, CRP/FNR family; structural genomics, porphyromona gingivalis, PSI, protein structure initiative; 1.90A {Porphyromonas gingivalis} SCOP: a.4.5.4 b.82.3.2
Probab=98.76 E-value=5.9e-10 Score=110.50 Aligned_cols=125 Identities=12% Similarity=0.021 Sum_probs=93.5
Q ss_pred cccccccCChhHHHHHHHhccceEeCCCCEEEEeCCeeeeEEEEeeeeEEEEEehhhHHHHHhhChhHHHHHHHHHHHHH
Q psy1512 455 RVEIFQNTEAGFLCELVLRLRPVLFSPGDYICRKGNRRTASVRSVGYSDLFVLSKTDMWDVLKEYPAARVRLESIAVKRL 534 (679)
Q Consensus 455 ~i~lF~~~~~~~l~~L~~~l~~~~~~pge~I~~~Gd~r~asv~a~~~~~ly~I~~g~~~~vl~~~p~~~~~~~~~~~~~~ 534 (679)
++|+|++++++.+..++..++.+.|.+|++|+++||+ .+.+|+|.+|.+...... ..|. ..
T Consensus 14 ~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~---------~~~~y~v~~G~v~~~~~~---~~g~-------~~ 74 (232)
T 2gau_A 14 LRDVWSLLNEEERELLDKEIQPFPCKKASTVFSEGDI---------PNNLFYLYEGKIKILREG---VYGR-------FH 74 (232)
T ss_dssp SHHHHTTCCHHHHHHHHHHCEEEEECTTCEEECTTCC---------CCEEEEEEESCEEEEC--------C-------CC
T ss_pred ccHhhhcCCHHHHHHHHhhCeEEEECCCCEEEeCCCC---------CCeEEEEEeCEEEEEEEC---CCCC-------EE
Confidence 6899999999999999999999999999999999998 788999988855321100 0000 00
Q ss_pred hhhccCcccCCCCCCCCCCCCcccccccccccceeecccchhHHHhhcChhHhhhhHHHHHHHh
Q psy1512 535 QKYKRTPLEKGISPSPFPGNRRTASVRSVGYSDLFVLSKTDMWDVLKEYPAARVRLESIAVKRL 598 (679)
Q Consensus 535 ~~~~~~~~~~g~~~~~~~~~~r~atv~A~~~~~l~~L~r~~f~~il~~~P~~~~~l~~~~~~rl 598 (679)
.-.....++..+..+++.+.|+.++++|.++|+++.|++++|.++++++|++...+...+.+++
T Consensus 75 ~~~~~~~G~~~G~~~~~~~~~~~~~~~A~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~l~~~l 138 (232)
T 2gau_A 75 ISRIVKPGQFFGMRPYFAEETCSSTAIAVENSKVLAIPVEAIEALLKGNTSFCRYFLKALAKEL 138 (232)
T ss_dssp EEEEECTTCEESHHHHHHTSCCSSEEEESSCEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred EEEEeCCCCEeeeehhhCCCCcceEEEEecceEEEEEEHHHHHHHHHHCHHHHHHHHHHHHHHH
Confidence 0001122232222345567899999999999999999999999999999999887777765543
No 47
>3of1_A CAMP-dependent protein kinase regulatory subunit; cyclic nucleotide binding domain, evolution, PKA signaling, transfer; HET: CMP; 2.21A {Saccharomyces cerevisiae}
Probab=98.75 E-value=8.2e-10 Score=110.26 Aligned_cols=119 Identities=15% Similarity=0.115 Sum_probs=93.0
Q ss_pred hhhhhhccccccccCChhHHHHHHHhccceEeCCCCEEEEeCCeeeeEEEEeeeeEEEEEehhhHHHHHhhChhHHHHHH
Q psy1512 448 VHLDTLKRVEIFQNTEAGFLCELVLRLRPVLFSPGDYICRKGNRRTASVRSVGYSDLFVLSKTDMWDVLKEYPAARVRLE 527 (679)
Q Consensus 448 ~~~~~l~~i~lF~~~~~~~l~~L~~~l~~~~~~pge~I~~~Gd~r~asv~a~~~~~ly~I~~g~~~~vl~~~p~~~~~~~ 527 (679)
+...+++++++|+++++..+..++..++.+.|.+|++|+++||+ .+.+|+|.+|.+...... ++
T Consensus 122 ~~~~~l~~~~~f~~l~~~~l~~l~~~~~~~~~~~g~~i~~~g~~---------~~~~y~I~~G~v~v~~~~-~~------ 185 (246)
T 3of1_A 122 MYDDLLKSMPVLKSLTTYDRAKLADALDTKIYQPGETIIREGDQ---------GENFYLIEYGAVDVSKKG-QG------ 185 (246)
T ss_dssp HSHHHHHHCGGGTTCCHHHHHHHHHTCEEEEECTTCEEECTTSB---------CCEEEEEEECEEEEEETT-TE------
T ss_pred HHHHHHhhChhhhcCCHHHHHHHHHhhheEEeCCCCEEEeCCCc---------CCEEEEEEecEEEEEEcC-Cc------
Confidence 44667889999999999999999999999999999999999998 789999988865332211 00
Q ss_pred HHHHHHHhhhccCcccCCCCCCCCCCCCcccccccccccceeecccchhHHHhhcChhHhhh
Q psy1512 528 SIAVKRLQKYKRTPLEKGISPSPFPGNRRTASVRSVGYSDLFVLSKTDMWDVLKEYPAARVR 589 (679)
Q Consensus 528 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~r~atv~A~~~~~l~~L~r~~f~~il~~~P~~~~~ 589 (679)
.-.....|+..+..+++.+.||+++++|.++|+++.|++++|.+++..+|+..++
T Consensus 186 -------~~~~l~~g~~fGe~~~~~~~~~~~~v~a~~~~~~~~i~~~~f~~ll~~~~~~~~~ 240 (246)
T 3of1_A 186 -------VINKLKDHDYFGEVALLNDLPRQATVTATKRTKVATLGKSGFQRLLGPAVDVLKL 240 (246)
T ss_dssp -------EEEEEETTCEECHHHHHHTCBCSSEEEESSCEEEEEEEHHHHHHHCTTHHHHHHH
T ss_pred -------eEEEcCCCCcccHHHHhCCCCcccEEEECCCEEEEEEeHHHHHHHhccHHHHHhc
Confidence 0011122332222345668999999999999999999999999999999987543
No 48
>3iwz_A CAP-like, catabolite activation-like protein; XCC, pathogenicity, CRP, CLP, C-DI-GMP receptor, quorum SENS binding, transcription; 2.30A {Xanthomonas campestris PV}
Probab=98.75 E-value=1.2e-09 Score=108.12 Aligned_cols=131 Identities=15% Similarity=0.088 Sum_probs=87.3
Q ss_pred hhhhccccccccCChhHHHHHHHhccceEeCCCCEEEEeCCeeeeEEEEeeeeEEEEEehhhHHHHHhhChhHHHHHHHH
Q psy1512 450 LDTLKRVEIFQNTEAGFLCELVLRLRPVLFSPGDYICRKGNRRTASVRSVGYSDLFVLSKTDMWDVLKEYPAARVRLESI 529 (679)
Q Consensus 450 ~~~l~~i~lF~~~~~~~l~~L~~~l~~~~~~pge~I~~~Gd~r~asv~a~~~~~ly~I~~g~~~~vl~~~p~~~~~~~~~ 529 (679)
...+++.++|.+++++.+..++..++.+.|.+|++|+++||+ .+.+|+|.+|.+...... + .|.
T Consensus 10 ~~~lr~~~lf~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~---------~~~~y~i~~G~v~~~~~~-~--~G~---- 73 (230)
T 3iwz_A 10 TTTVRNATPSLTLDAGTIERFLAHSHRRRYPTRTDVFRPGDP---------AGTLYYVISGSVSIIAEE-D--DDR---- 73 (230)
T ss_dssp ------------CCHHHHHHHHTTSEEEEECTTCEEECTTSB---------CCEEEEEEESCEEEEEEC-T--TSC----
T ss_pred hhhhhhcchhccCCHHHHHHHHHhCeEEEeCCCCEEECCCCC---------CCeEEEEEeeEEEEEEEC-C--CCC----
Confidence 456889999999999999999999999999999999999998 788999988854322100 0 000
Q ss_pred HHHHHhhhccCcccCCCCCCCCCC-CCcccccccccccceeecccchhHHHhhcC-----hhHhhhhHHHHHHHhh
Q psy1512 530 AVKRLQKYKRTPLEKGISPSPFPG-NRRTASVRSVGYSDLFVLSKTDMWDVLKEY-----PAARVRLESIAVKRLQ 599 (679)
Q Consensus 530 ~~~~~~~~~~~~~~~g~~~~~~~~-~~r~atv~A~~~~~l~~L~r~~f~~il~~~-----P~~~~~l~~~~~~rl~ 599 (679)
...-.....++..+..+.+.+ .|+.++++|.++|+++.|++++|.++++++ |++...+...+.+++.
T Consensus 74 ---~~~~~~~~~g~~~G~~~~~~~~~~~~~~~~a~~~~~v~~i~~~~~~~l~~~~~~~~~p~~~~~~~~~l~~~l~ 146 (230)
T 3iwz_A 74 ---ELVLGYFGSGEFVGEMGLFIESDTREVILRTRTQCELAEISYERLQQLFQTSLSPDAPRILYAIGVQLSKRLL 146 (230)
T ss_dssp ---EEEEEEECTTCEESCGGGTSCCSBCCSEEEESSCEEEEEEEHHHHHHHHHTTTGGGHHHHHHHHHHHHHHHHH
T ss_pred ---EEEEEEecCCCEEEehhhhcCCCCceeEEEEcCcEEEEEEeHHHHHHHHHHhcccCCcHHHHHHHHHHHHHHH
Confidence 000011223333333344555 589999999999999999999999999999 9998877777665433
No 49
>2qcs_B CAMP-dependent protein kinase type I-alpha regula subunit, CAMP-dependent protein kinase, alpha-catalytic SU; cyclic adenosine monophosphate; HET: SEP TPO ANP TAM; 2.20A {Bos taurus} PDB: 1rl3_A* 1rgs_A* 1ne6_A* 1ne4_A*
Probab=98.72 E-value=2.4e-09 Score=109.93 Aligned_cols=133 Identities=14% Similarity=0.092 Sum_probs=101.3
Q ss_pred HHhhhhhhccccccccCChhHHHHHHHhccceEeCCCCEEEEeCCeeeeEEEEeeeeEEEEEehhhHHHHHhhChhHHHH
Q psy1512 446 INVHLDTLKRVEIFQNTEAGFLCELVLRLRPVLFSPGDYICRKGNRRTASVRSVGYSDLFVLSKTDMWDVLKEYPAARVR 525 (679)
Q Consensus 446 ~~~~~~~l~~i~lF~~~~~~~l~~L~~~l~~~~~~pge~I~~~Gd~r~asv~a~~~~~ly~I~~g~~~~vl~~~p~~~~~ 525 (679)
..+...+++++++|.++++..+..++..++.+.|.+|++|+++||+ .+.+|+|.+|.+...... ++ +.
T Consensus 152 ~~~~~~~l~~~~lf~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~---------~~~~y~i~~G~v~~~~~~-~~--~~ 219 (291)
T 2qcs_B 152 RKMYEEFLSKVSILESLDKWERLTVADALEPVQFEDGQKIVVQGEP---------GDEFFIILEGSAAVLQRR-SE--NE 219 (291)
T ss_dssp HHHHHHHHHTCGGGTTCCHHHHHHHHHHCEEEEECTTCEEECTTSC---------CCEEEEEEEEEEEEEEEC-ST--TS
T ss_pred HHHHHHHHhhchHhhhCCHHHHHHHHhhcEEEEECCCCEEEeCCcc---------CCEEEEEEeCEEEEEEec-CC--CC
Confidence 3445677889999999999999999999999999999999999998 778999988866432111 00 00
Q ss_pred HHHHHHHHHhhhccCcccCCCCCCCCCCCCcccccccccccceeecccchhHHHhhcChhHhhhhHHHHHH
Q psy1512 526 LESIAVKRLQKYKRTPLEKGISPSPFPGNRRTASVRSVGYSDLFVLSKTDMWDVLKEYPAARVRLESIAVK 596 (679)
Q Consensus 526 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~r~atv~A~~~~~l~~L~r~~f~~il~~~P~~~~~l~~~~~~ 596 (679)
+...-.....|+..++.+++.+.||++|++|.++|+++.|++++|.+++.++|+....+......
T Consensus 220 ------~~~~~~~l~~G~~fGe~~ll~~~~~~~tv~a~~~~~~~~i~~~~f~~~l~~~p~~~~~~~~~~~~ 284 (291)
T 2qcs_B 220 ------EFVEVGRLGPSDYFGEIALLMNRPKAATVVARGPLKCVKLDRPRFERVLGPCSDILKRNIQQYNS 284 (291)
T ss_dssp ------CEEEEEEECTTCEECSGGGTCCCCCSSEEEEEEEEEEEEEEHHHHHHHHCCHHHHHTTSHHHHHH
T ss_pred ------ccEEEEEeCCCCEecHHHHcCCCCcceEEEECCcEEEEEEcHHHHHHHhccHHHHHHHHHHHHHH
Confidence 00001112334444445677889999999999999999999999999999999988776665443
No 50
>3tnp_B CAMP-dependent protein kinase type II-beta regula subunit; PKA RIIB tetrameric holoenzyme, transferase; HET: SEP TPO; 2.30A {Mus musculus} PDB: 3tnq_A* 1cx4_A* 2qvs_B*
Probab=98.69 E-value=2.5e-09 Score=115.89 Aligned_cols=142 Identities=10% Similarity=0.047 Sum_probs=97.9
Q ss_pred hhhhhhccccccccCChhHHHHHHHhccceEeCCCCEEEEeCCeeeeEEEEeeeeEEEEEehhhHHHHHhhChhHHHHHH
Q psy1512 448 VHLDTLKRVEIFQNTEAGFLCELVLRLRPVLFSPGDYICRKGNRRTASVRSVGYSDLFVLSKTDMWDVLKEYPAARVRLE 527 (679)
Q Consensus 448 ~~~~~l~~i~lF~~~~~~~l~~L~~~l~~~~~~pge~I~~~Gd~r~asv~a~~~~~ly~I~~g~~~~vl~~~p~~~~~~~ 527 (679)
++..+++++++|+.+++..+..++..++.+.|.+|++|+++||+ .+.+|+|.+|.+........ ..+
T Consensus 264 ~~~~~L~~v~lf~~Ls~~el~~L~~~l~~~~~~~Ge~I~~eGd~---------~~~~yiI~sG~v~v~~~~~~-~~~--- 330 (416)
T 3tnp_B 264 MYESFIESLPFLKSLEVSERLKVVDVIGTKVYNDGEQIIAQGDL---------ADSFFIVESGEVKITMKRKG-KSE--- 330 (416)
T ss_dssp SSSSSGGGCGGGTTCCHHHHHHHHHHCEEEEECTTCEEECTTSC---------CCEEEEEEEEEEEEECC----------
T ss_pred HHHHHHhhchHhhcCCHHHHHHHHhhceEEEECCCCEEEeCCCc---------CCEEEEEEeCEEEEEEecCC-ccc---
Confidence 34567899999999999999999999999999999999999998 78999999987643322100 000
Q ss_pred HHHHHHHhhhccCcccCCCCCCCCCCCCcccccccccccceeecccchhHHHhhcChhHhhhhHHHHHHHhhhcC
Q psy1512 528 SIAVKRLQKYKRTPLEKGISPSPFPGNRRTASVRSVGYSDLFVLSKTDMWDVLKEYPAARVRLESIAVKRLQKYK 602 (679)
Q Consensus 528 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~r~atv~A~~~~~l~~L~r~~f~~il~~~P~~~~~l~~~~~~rl~~~~ 602 (679)
....+...-.....|+..+..+++.+.||++||+|.++|+++.|++++|.+++..+|+...+......+++....
T Consensus 331 ~~~g~~~~l~~l~~G~~fGE~all~~~~r~~tv~A~~~~~ll~I~~~~f~~ll~~~p~i~~~~~~~~~~~L~~~~ 405 (416)
T 3tnp_B 331 VEENGAVEIARCFRGQYFGELALVTNKPRAASAHAIGTVKCLAMDVQAFERLLGPCMEIMKRNIATYEEQLVALF 405 (416)
T ss_dssp ------CEEEEECTTCEESGGGGTCCSCCSSEEEEEEEEEEEEEEHHHHHHHHCCHHHHHTCC------------
T ss_pred ccCCceeEEEEeCCCCEecHHHHhCCCCceeEEEEcCCeEEEEEEHHHHHHHhcchHHHHHHHHHHHHHHHHHHh
Confidence 000000011112234443445677899999999999999999999999999999999998888877777666543
No 51
>3pjs_K KCSA, voltage-gated potassium channel; ION channel, conducts K+ IONS, cell membrane, transport PROT; 3.80A {Streptomyces lividans} PDB: 1f6g_A
Probab=98.69 E-value=2.7e-09 Score=100.00 Aligned_cols=64 Identities=20% Similarity=0.366 Sum_probs=56.7
Q ss_pred hhhhHHHHHHHHHHhhccc--CCcCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1512 275 VKQYLQSYYWCTLALTTIG--DLPRPRSKGEYFFVIVQLLFGLLLFATVLGHVANIVTSVSAARKEF 339 (679)
Q Consensus 275 ~~~Y~~slywa~~tlttvG--di~~p~t~~e~i~~i~~~i~G~~~~a~~ig~i~~ii~~~~~~~~~~ 339 (679)
...|.+|+||+++|+||+| |+ .|.|..+++++++.+++|+++++++++.+++.+.+...++.+.
T Consensus 65 ~~~~~~a~yf~~~T~tTvGyGDi-~P~t~~~r~~~~~~~l~G~~~~~~~~~~i~~~~~~~~~~~~~~ 130 (166)
T 3pjs_K 65 LITYPRALWWSVETATTVGYGDL-YPVTLWGRLVAVVVMVAGITSFGLVTAALATWFVGQEQQQQQQ 130 (166)
T ss_dssp CCSTTTTTTTTHHHHSCCCCSSS-CCCSSTTTTTTHHHHHHHHHHHHHHHTTSSSSSSSSHHHHHHH
T ss_pred cCCHHHHHHHHHHHhccccCCCC-CCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4578999999999999998 99 6999999999999999999999999999999988766554443
No 52
>1o7f_A CAMP-dependent RAP1 guanine-nucleotide exchange factor; EPAC2, CAMP-GEF2, campb binding doamin, regulation; 2.5A {Mus musculus} SCOP: a.4.5.31 b.82.3.2 b.82.3.2
Probab=98.68 E-value=1.3e-09 Score=120.06 Aligned_cols=137 Identities=15% Similarity=0.108 Sum_probs=99.4
Q ss_pred CcchHHHHHHHhhhhhhccccccccCChhHHHHHHHhccce-EeCCCCEEEEeCCeeeeEEEEeeeeEEEEEehhhHHHH
Q psy1512 437 PDKLKAEIAINVHLDTLKRVEIFQNTEAGFLCELVLRLRPV-LFSPGDYICRKGNRRTASVRSVGYSDLFVLSKTDMWDV 515 (679)
Q Consensus 437 ~~~Lr~ei~~~~~~~~l~~i~lF~~~~~~~l~~L~~~l~~~-~~~pge~I~~~Gd~r~asv~a~~~~~ly~I~~g~~~~v 515 (679)
|+..|.+-..+...+.++++++|.+++++.+..++..++.. .|.+|++|+++||+ .+.+|+|.+|.+...
T Consensus 323 ~~~~r~~~~~~~~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~~g~~i~~~G~~---------~~~~yiI~~G~v~v~ 393 (469)
T 1o7f_A 323 PPGQRTVDDLEIIYDELLHIKALSHLSTTVKRELAGVLIFESHAKGGTVLFNQGEE---------GTSWYIILKGSVNVV 393 (469)
T ss_dssp CTTSCCHHHHHHHHHHHTTCGGGTTSCHHHHHHHHHHCEEEEECSTTCEEECTTSC---------CCEEEEEEESEEEEE
T ss_pred CchhcCHHHHHHHHHHHhcCHhhhhCCHHHHHHHHHHhheeeEecCCCEEEeCCCc---------CCeEEEEEEeEEEEE
Confidence 44555555566667889999999999999999999999854 89999999999998 789999988866432
Q ss_pred HhhChhHHHHHHHHHHHHHhhhccCcccCCCCCCCCCCCCccccccccc-ccceeecccchhHHHhhcChhHhhhhHHHH
Q psy1512 516 LKEYPAARVRLESIAVKRLQKYKRTPLEKGISPSPFPGNRRTASVRSVG-YSDLFVLSKTDMWDVLKEYPAARVRLESIA 594 (679)
Q Consensus 516 l~~~p~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~r~atv~A~~-~~~l~~L~r~~f~~il~~~P~~~~~l~~~~ 594 (679)
... .........|+..++.+++.+.||++||+|.+ +|+++.|++++|.++++++|+....+.+..
T Consensus 394 ~~~--------------~~~~~~l~~G~~fGe~~ll~~~~~~~tv~a~~~~~~~~~i~~~~f~~ll~~~p~~~~~l~e~~ 459 (469)
T 1o7f_A 394 IYG--------------KGVVCTLHEGDDFGKLALVNDAPRAASIVLREDNCHFLRVDKEDFNRILRDVEANTVRLKEHD 459 (469)
T ss_dssp ETT--------------TEEEEEEETTCEECGGGGTCCSCCSSEEEESSSSEEEEEEEHHHHHHHHHHTTCC--------
T ss_pred EcC--------------CeeEEEecCCCEEEEehhhcCCCceEEEEEecCCEEEEEEcHHHHHHHHHHChHHHHHHHhcC
Confidence 110 00111122344444456778999999999998 799999999999999999999988777654
Q ss_pred HH
Q psy1512 595 VK 596 (679)
Q Consensus 595 ~~ 596 (679)
..
T Consensus 460 ~~ 461 (469)
T 1o7f_A 460 QD 461 (469)
T ss_dssp --
T ss_pred ce
Confidence 33
No 53
>4din_B CAMP-dependent protein kinase type I-beta regulat subunit, CAMP-dependent protein kinase catalytic subunit A; isoform diversity; HET: TPO SEP ATP; 3.70A {Homo sapiens}
Probab=98.67 E-value=2.5e-09 Score=114.63 Aligned_cols=134 Identities=16% Similarity=0.133 Sum_probs=102.7
Q ss_pred HhhhhhhccccccccCChhHHHHHHHhccceEeCCCCEEEEeCCeeeeEEEEeeeeEEEEEehhhHHHHHhhChhHHHHH
Q psy1512 447 NVHLDTLKRVEIFQNTEAGFLCELVLRLRPVLFSPGDYICRKGNRRTASVRSVGYSDLFVLSKTDMWDVLKEYPAARVRL 526 (679)
Q Consensus 447 ~~~~~~l~~i~lF~~~~~~~l~~L~~~l~~~~~~pge~I~~~Gd~r~asv~a~~~~~ly~I~~g~~~~vl~~~p~~~~~~ 526 (679)
.++..+++++++|.++++..+..++..++.+.|.+|++|+++||+ .+.+|+|.+|.+........ +.
T Consensus 244 ~~~~~~L~~v~~f~~Ls~~el~~l~~~~~~~~~~~ge~I~~eGd~---------~~~~yiI~~G~v~v~~~~~~---~~- 310 (381)
T 4din_B 244 KMYEEFLSKVSILESLEKWERLTVADALEPVQFEDGEKIVVQGEP---------GDDFYIITEGTASVLQRRSP---NE- 310 (381)
T ss_dssp HHHHHHHHHCSTTTTCCTTHHHHHHTTCBCCCBCSSCBSSCTTSB---------CCEEEEEEESCEEEECCSSS---SS-
T ss_pred HHHHHHhhhhHHHHhccHHHHHHHHHhhhhccCCCCCEEEeCCCc---------CCEEEEEEeCEEEEEEecCC---CC-
Confidence 345678899999999999999999999999999999999999998 78999998886643221100 00
Q ss_pred HHHHHHHHhhhccCcccCCCCCCCCCCCCcccccccccccceeecccchhHHHhhcChhHhhhhHHHHHHHh
Q psy1512 527 ESIAVKRLQKYKRTPLEKGISPSPFPGNRRTASVRSVGYSDLFVLSKTDMWDVLKEYPAARVRLESIAVKRL 598 (679)
Q Consensus 527 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~r~atv~A~~~~~l~~L~r~~f~~il~~~P~~~~~l~~~~~~rl 598 (679)
+...-.....|+..+..+++.+.||+++|+|.++|+++.|++++|.+++..+|+..++......+.+
T Consensus 311 -----~~~~v~~l~~Gd~fGe~all~~~~r~~tv~A~~~~~ll~i~~~~f~~ll~~~~~i~~~~~~~~~~~l 377 (381)
T 4din_B 311 -----EYVEVGRLGPSDYFGEIALLLNRPRAATVVARGPLKCVKLDRPRFERVLGPCSEILKRNIQRYNSFI 377 (381)
T ss_dssp -----CCCEEEEECTTCEECTTGGGSCCBCSSEEEESSCBEEEEEEHHHHHHHHCCHHHHHHTTHHHHHHHH
T ss_pred -----ceEEEEEeCCCCEechHHHhCCCCceeEEEEcCCEEEEEEeHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence 0000011223444444577789999999999999999999999999999999998877776655443
No 54
>2fmy_A COOA, carbon monoxide oxidation system transcription RE COOA-1; DNA transcription regulator, DNA binding protein; HET: HEM; 2.20A {Carboxydothermus hydrogenoformans} PDB: 2hkx_A*
Probab=98.66 E-value=6.3e-10 Score=109.41 Aligned_cols=122 Identities=10% Similarity=0.117 Sum_probs=93.4
Q ss_pred hhhhccccccccCChhHHHHHHHhccceEeCCCCEEEEeCCeeeeEEEEeeeeEEEEEehhhHHHHHhhChhHHHHHHHH
Q psy1512 450 LDTLKRVEIFQNTEAGFLCELVLRLRPVLFSPGDYICRKGNRRTASVRSVGYSDLFVLSKTDMWDVLKEYPAARVRLESI 529 (679)
Q Consensus 450 ~~~l~~i~lF~~~~~~~l~~L~~~l~~~~~~pge~I~~~Gd~r~asv~a~~~~~ly~I~~g~~~~vl~~~p~~~~~~~~~ 529 (679)
+.+|+++|+|++++++.+..++..++.+.|.+|++|+++||+ .+.+|+|.+|.+... ..+ .|
T Consensus 3 ~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~---------~~~~y~i~~G~v~~~--~~~--~G----- 64 (220)
T 2fmy_A 3 QMRLTDTNLLEVLNSEEYSGVLKEFREQRYSKKAILYTPNTE---------RNLVFLVKSGRVRVY--LAY--ED----- 64 (220)
T ss_dssp TTCSCSSCHHHHTTSGGGTTTGGGSEEEEECTTCEEECTTCS---------SCEEEEEEESEEEEE--EEC--SS-----
T ss_pred hhhhhcChhhhcCCHHHHHHHHHhhheeEeCCCCEEECCCCC---------CCeEEEEEecEEEEE--ECC--CC-----
Confidence 457889999999999999999999999999999999999998 788999988865321 000 00
Q ss_pred HHHHHhhhccCcccCCCCCCCCCCCCcccccccccccceeecccchhHHHhhcChhHhhhhHHHHHHHh
Q psy1512 530 AVKRLQKYKRTPLEKGISPSPFPGNRRTASVRSVGYSDLFVLSKTDMWDVLKEYPAARVRLESIAVKRL 598 (679)
Q Consensus 530 ~~~~~~~~~~~~~~~g~~~~~~~~~~r~atv~A~~~~~l~~L~r~~f~~il~~~P~~~~~l~~~~~~rl 598 (679)
..........|+. .|.|+.++++|.++|+++.|++++|.++++++|++...+...+.+++
T Consensus 65 -----~~~~~~~~~~G~~----~G~~~~~~~~A~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~~~~~~ 124 (220)
T 2fmy_A 65 -----KEFTLAILEAGDI----FCTHTRAFIQAMEDTTILYTDIRNFQNIVVEFPAFSLNMVKVLGDLL 124 (220)
T ss_dssp -----CEEEEEEEETTCE----EESCSSSEEEESSSEEEEEEEHHHHHHHHHHCTHHHHHHHHHHHHHH
T ss_pred -----CEEEEEEcCCCCE----eCCccceEEEEcCcEEEEEEeHHHHHHHHHHCHHHHHHHHHHHHHHH
Confidence 0001111222332 12289999999999999999999999999999999887777765543
No 55
>3cf6_E RAP guanine nucleotide exchange factor (GEF) 4; EPAC, rapgef4, CAMP, SP-camps, GEF, gunanine nucleotide exchange factor, G-protein, GTP-binding, nucleotide-binding; HET: SP1; 2.20A {Mus musculus}
Probab=98.63 E-value=4.8e-08 Score=112.10 Aligned_cols=109 Identities=22% Similarity=0.330 Sum_probs=93.7
Q ss_pred CcchHHHHHHHhhhhhhccccccccCChhHHHHHHHhcc-ceEeCCCCEEEEeCCeeeeEEEEeeeeEEEEEehhhHHHH
Q psy1512 437 PDKLKAEIAINVHLDTLKRVEIFQNTEAGFLCELVLRLR-PVLFSPGDYICRKGNRRTASVRSVGYSDLFVLSKTDMWDV 515 (679)
Q Consensus 437 ~~~Lr~ei~~~~~~~~l~~i~lF~~~~~~~l~~L~~~l~-~~~~~pge~I~~~Gd~r~asv~a~~~~~ly~I~~g~~~~v 515 (679)
++..|.+..++...+.++++++|++++++.+..++..+. .+.|.+|++|+++||+
T Consensus 18 ~p~~r~~~d~~~l~~~L~~~~lF~~Ls~~~l~~L~~~~~~~~~~~kGe~I~~eGd~------------------------ 73 (694)
T 3cf6_E 18 PPGQRTVDDLEIIYDELLHIKALSHLSTTVKRELAGVLIFESHAKGGTVLFNQGEE------------------------ 73 (694)
T ss_dssp CGGGCCHHHHHHHHHHHTTCGGGTTSCHHHHHHHHTTCEEEEECSTTCEEECTTSB------------------------
T ss_pred ChhhCCHHHHHHHHHHHHcChhhccCCHHHHHHHHHhcceEEEECCCCEEECCCCc------------------------
Confidence 666677666667788999999999999999999999998 6899999999999987
Q ss_pred HhhChhHHHHHHHHHHHHHhhhccCcccCCCCCCCCCCCCcccccccccccceeecccchhHHHhhcChhHhhhhHHHHH
Q psy1512 516 LKEYPAARVRLESIAVKRLQKYKRTPLEKGISPSPFPGNRRTASVRSVGYSDLFVLSKTDMWDVLKEYPAARVRLESIAV 595 (679)
Q Consensus 516 l~~~p~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~r~atv~A~~~~~l~~L~r~~f~~il~~~P~~~~~l~~~~~ 595 (679)
T Consensus 74 -------------------------------------------------------------------------------- 73 (694)
T 3cf6_E 74 -------------------------------------------------------------------------------- 73 (694)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHhhhcCCCceecCCCCceEEEEEeeEEEEEecCCceEeEEcCCCCeeeeeccccCC--ceEEEEee-eeeeee
Q psy1512 596 KRLQKYKRTPLEKGEVGKEMYIVNRGRLQVVADNGKTVLATLRAGSYFGEISILNMG--TAGTNLIQ-ECEDHI 666 (679)
Q Consensus 596 ~rl~~~~~~ii~~Ge~g~~~yiI~~G~v~v~~~~~~~~i~~L~~G~~FGE~all~~~--~~t~~a~~-~~~~~~ 666 (679)
++.+|||.+|.|++...+. ..+..+++|++|||.+++.+. .+++.|.+ +|+-..
T Consensus 74 ----------------~~~lyiIlsG~V~v~~~g~-~il~~l~~Gd~fGe~al~~~~~~~~tv~A~edd~~ll~ 130 (694)
T 3cf6_E 74 ----------------GTSWYIILKGSVNVVIYGK-GVVCTLHEGDDFGKLALVNDAPRAASIVLREDNCHFLR 130 (694)
T ss_dssp ----------------CCEEEEEEESEEEEEETTT-EEEEEEETTCEECHHHHHHTCBCSSEEEECSSSEEEEE
T ss_pred ----------------CCeEEEEEEEEEEEEEeCC-EEEEEeCCCCEeehHHHhCCCCceEEEEEeeCceEEEE
Confidence 6678888899999987643 689999999999999999887 88889988 466554
No 56
>3ryp_A Catabolite gene activator; CAMP receptor protein (CRP), allostery, DNA binding cyclic A transcription regulator; HET: CMP; 1.60A {Escherichia coli} PDB: 2cgp_A* 3hif_A 1g6n_A* 3ryr_A* 1i5z_A* 1j59_A* 1lb2_A* 1run_A* 1zrc_A* 1zrd_A* 1zre_A* 1zrf_A* 2gzw_A* 2wc2_A 3iyd_G* 3n4m_A* 3qop_A* 3rdi_A* 3rou_A* 3rpq_A* ...
Probab=98.63 E-value=4.6e-09 Score=102.15 Aligned_cols=123 Identities=13% Similarity=0.109 Sum_probs=87.4
Q ss_pred cccccCChhHHHHHHHhccceEeCCCCEEEEeCCeeeeEEEEeeeeEEEEEehhhHHHHHhhChhHHHHHHHHHHHHHhh
Q psy1512 457 EIFQNTEAGFLCELVLRLRPVLFSPGDYICRKGNRRTASVRSVGYSDLFVLSKTDMWDVLKEYPAARVRLESIAVKRLQK 536 (679)
Q Consensus 457 ~lF~~~~~~~l~~L~~~l~~~~~~pge~I~~~Gd~r~asv~a~~~~~ly~I~~g~~~~vl~~~p~~~~~~~~~~~~~~~~ 536 (679)
++++.++++.+..++..++.+.|.+|++|+++||+ .+.+|+|.+|.+...... ++ |. ...-
T Consensus 2 ~l~~~l~~~~l~~l~~~~~~~~~~~g~~i~~~g~~---------~~~~y~i~~G~v~~~~~~-~~--g~-------~~~~ 62 (210)
T 3ryp_A 2 VLGKPQTDPTLEWFLSHCHIHKYPSKSTLIHQGEK---------AETLYYIVKGSVAVLIKD-EE--GK-------EMIL 62 (210)
T ss_dssp -----CCCHHHHHHHTTSEEEEECTTCEEECTTSB---------CCEEEEEEESEEEEEEEC-TT--CC-------EEEE
T ss_pred cCCCcCCHHHHHHHHHhcEEEEeCCCCEEECCCCC---------CCeEEEEEeCEEEEEEEC-CC--CC-------EEEE
Confidence 46677999999999999999999999999999998 788999987754321110 00 00 0000
Q ss_pred hccCcccCCCCCCCCCCC-CcccccccccccceeecccchhHHHhhcChhHhhhhHHHHHHHh
Q psy1512 537 YKRTPLEKGISPSPFPGN-RRTASVRSVGYSDLFVLSKTDMWDVLKEYPAARVRLESIAVKRL 598 (679)
Q Consensus 537 ~~~~~~~~g~~~~~~~~~-~r~atv~A~~~~~l~~L~r~~f~~il~~~P~~~~~l~~~~~~rl 598 (679)
.....++..+..+++.+. |+.++++|.++|+++.|++++|.+++.++|++...+...+.+++
T Consensus 63 ~~~~~g~~~G~~~~~~~~~~~~~~~~a~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~l~~~l 125 (210)
T 3ryp_A 63 SYLNQGDFIGELGLFEEGQERSAWVRAKTACEVAEISYKKFRQLIQVNPDILMRLSAQMARRL 125 (210)
T ss_dssp EEEETTCEESCTTTTSTTCBCSSEEEESSCEEEEEEEHHHHHHHHHHCTHHHHHHHHHHHHHH
T ss_pred EEcCCCCEeeeHHHhcCCCCceEEEEECCcEEEEEEcHHHHHHHHHHChHHHHHHHHHHHHHH
Confidence 011233333344556666 89999999999999999999999999999999887776665533
No 57
>1ft9_A Carbon monoxide oxidation system transcription regulator; heme sensor, catabolite gene activator protein; HET: HEM; 2.60A {Rhodospirillum rubrum} SCOP: a.4.5.4 b.82.3.1
Probab=98.62 E-value=6.6e-10 Score=109.49 Aligned_cols=119 Identities=12% Similarity=0.044 Sum_probs=91.4
Q ss_pred hhccccccccCChhHHHHHHHhccceEeCCCCEEEEeCCeeeeEEEEeeeeEEEEEehhhHHHHHhhChhHHHHHHHHHH
Q psy1512 452 TLKRVEIFQNTEAGFLCELVLRLRPVLFSPGDYICRKGNRRTASVRSVGYSDLFVLSKTDMWDVLKEYPAARVRLESIAV 531 (679)
Q Consensus 452 ~l~~i~lF~~~~~~~l~~L~~~l~~~~~~pge~I~~~Gd~r~asv~a~~~~~ly~I~~g~~~~vl~~~p~~~~~~~~~~~ 531 (679)
+|+++|+|++++++.+..++..++.+.|.+|++|+++||+ .+.+|+|.+|.+... ..+ .|
T Consensus 1 ~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~---------~~~~y~i~~G~v~~~--~~~--~G------- 60 (222)
T 1ft9_A 1 MPPRFNIANVLLSPDGETFFRGFRSKIHAKGSLVCTGEGD---------ENGVFVVVDGRLRVY--LVG--EE------- 60 (222)
T ss_dssp -CCCCCTHHHHTSTTTTTTTTTCEEEEECTTCEEECTTCC---------CCCEEEEEESEEEEE--EEE--TT-------
T ss_pred CcccchhhhcCCHHHHHHHHhhCcEEEECCCCEEECCCCC---------CCeEEEEEecEEEEE--ECC--CC-------
Confidence 3678999999999999999999999999999999999998 778999988865321 000 00
Q ss_pred HHHhhhccCcccCCCCCCCCCCCCcccccccccccceeecccchhHHHhhcChhHhhhhHHHHHHH
Q psy1512 532 KRLQKYKRTPLEKGISPSPFPGNRRTASVRSVGYSDLFVLSKTDMWDVLKEYPAARVRLESIAVKR 597 (679)
Q Consensus 532 ~~~~~~~~~~~~~g~~~~~~~~~~r~atv~A~~~~~l~~L~r~~f~~il~~~P~~~~~l~~~~~~r 597 (679)
..........|... |.|+.++++|.++|+++.|++++|.++++++|++...+...+.++
T Consensus 61 ---~~~~~~~~~~G~~f----G~~~~~~~~A~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~l~~~ 119 (222)
T 1ft9_A 61 ---REISLFYLTSGDMF----CMHSGCLVEATERTEVRFADIRTFEQKLQTCPSMAWGLIAILGRA 119 (222)
T ss_dssp ---EEEEEEEEETTCEE----ESCSSCEEEESSCEEEEEECHHHHHHHHHHCGGGHHHHHHHHHHH
T ss_pred ---CEEEEEEcCCCCEe----cCCCCEEEEEccceEEEEEeHHHHHHHHHHChHHHHHHHHHHHHH
Confidence 00111122233322 279999999999999999999999999999999988777766553
No 58
>2ptm_A Hyperpolarization-activated (IH) channel; ION channel, cyclic nucleotide binding domain, C-linker, CAM SPHCN1, HCN; HET: CMP; 1.93A {Strongylocentrotus purpuratus}
Probab=98.57 E-value=4.2e-08 Score=94.66 Aligned_cols=62 Identities=26% Similarity=0.561 Sum_probs=55.1
Q ss_pred CceecCCCCceEEEEEeeEEEEEecCCceEeEEcCCCCeeeeeccccCC--ceEEEEeeeeeeee
Q psy1512 604 TPLEKGEVGKEMYIVNRGRLQVVADNGKTVLATLRAGSYFGEISILNMG--TAGTNLIQECEDHI 666 (679)
Q Consensus 604 ~ii~~Ge~g~~~yiI~~G~v~v~~~~~~~~i~~L~~G~~FGE~all~~~--~~t~~a~~~~~~~~ 666 (679)
.|+++|+.++.+|+|.+|+|++...+|. .+..+++|++|||.+++.+. .++|+|.++|+-..
T Consensus 104 ~I~~~G~~~~~ly~I~~G~v~~~~~~g~-~~~~l~~G~~fGe~~~~~~~~~~~~~~a~~~~~l~~ 167 (198)
T 2ptm_A 104 YVIQEGTFGDRMFFIQQGIVDIIMSDGV-IATSLSDGSYFGEICLLTRERRVASVKCETYCTLFS 167 (198)
T ss_dssp EEECTTSCCSEEEEEEECCEEEECTTSC-EEEEECTTCEESCHHHHHSSCCSSEEEESSCEEEEE
T ss_pred EEEECCCcCcEEEEEEeCEEEEEecCCe-EEEEecCCCEechHHHcCCCccceEEEEeeEEEEEE
Confidence 8899999999999999999999975554 89999999999999999987 88999988776554
No 59
>3idb_B CAMP-dependent protein kinase type II-beta regulatory subunit, CAMP-dependent protein kinase catalytic subunit alpha; PKA, SPR, affinity; HET: TPO SEP ANP; 1.62A {Rattus norvegicus} PDB: 3idc_B*
Probab=98.57 E-value=9.6e-08 Score=88.70 Aligned_cols=93 Identities=12% Similarity=0.184 Sum_probs=68.2
Q ss_pred chhHHHhhcChhHhhhhHHH---HHH--Hhhhc--CCCceecCCCCceEEEEEeeEEEEEe--cCCceEeEEcCCCCeee
Q psy1512 574 TDMWDVLKEYPAARVRLESI---AVK--RLQKY--KRTPLEKGEVGKEMYIVNRGRLQVVA--DNGKTVLATLRAGSYFG 644 (679)
Q Consensus 574 ~~f~~il~~~P~~~~~l~~~---~~~--rl~~~--~~~ii~~Ge~g~~~yiI~~G~v~v~~--~~~~~~i~~L~~G~~FG 644 (679)
+.+.+++++.|-+...-... +.. +.+.+ +..++++|+.++.+|+|.+|.|++.. ++....+..+++|++||
T Consensus 34 ~~~~~~l~~~~~f~~l~~~~l~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~~~~g~~~~~~~~~~G~~fG 113 (161)
T 3idb_B 34 NRLQEACKDILLFKNLDPEQMSQVLDAMFEKLVKEGEHVIDQGDDGDNFYVIDRGTFDIYVKCDGVGRCVGNYDNRGSFG 113 (161)
T ss_dssp HHHHHHHTTCHHHHTSCHHHHHHHHHHCEEEEECTTCEEECTTSCCCEEEEEEESEEEEEEEETTEEEEEEEEESCCEEC
T ss_pred HHHHHHHhCCHhhhcCCHHHHHHHHHhcceeEeCCCCEEEeCCCCCcEEEEEEeCEEEEEEcCCCCeEEEEEcCCCCEec
Confidence 34567778877765432222 222 12222 23889999999999999999999986 22345788999999999
Q ss_pred eeccccCC--ceEEEEeeeeeeee
Q psy1512 645 EISILNMG--TAGTNLIQECEDHI 666 (679)
Q Consensus 645 E~all~~~--~~t~~a~~~~~~~~ 666 (679)
|.+++.+. .++++|.++|+-..
T Consensus 114 e~~~~~~~~~~~~v~A~~~~~~~~ 137 (161)
T 3idb_B 114 ELALMYNTPRAATITATSPGALWG 137 (161)
T ss_dssp GGGGTCCCCCSSEEEESSSEEEEE
T ss_pred hHHHHcCCCcccEEEECCCeEEEE
Confidence 99999987 88889888776544
No 60
>3ocp_A PRKG1 protein; serine/threonine kinase, TF2I and IRAG, transferase; HET: CMP; 2.49A {Homo sapiens} PDB: 3od0_A* 3ogj_A*
Probab=98.55 E-value=5.7e-08 Score=87.80 Aligned_cols=92 Identities=21% Similarity=0.319 Sum_probs=67.3
Q ss_pred cchhHHHhhcChhHhhhh---HHHHHH--HhhhcCC--CceecCCCCceEEEEEeeEEEEEecCCceEeEEcCCCCeeee
Q psy1512 573 KTDMWDVLKEYPAARVRL---ESIAVK--RLQKYKR--TPLEKGEVGKEMYIVNRGRLQVVADNGKTVLATLRAGSYFGE 645 (679)
Q Consensus 573 r~~f~~il~~~P~~~~~l---~~~~~~--rl~~~~~--~ii~~Ge~g~~~yiI~~G~v~v~~~~~~~~i~~L~~G~~FGE 645 (679)
++.+.+++++.|.+...- .+.+.. +.+.+.+ .++++|+.++.+|+|.+|.|++.+++ +.+..+++|++|||
T Consensus 18 ~~~~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~g--~~~~~~~~G~~fGe 95 (139)
T 3ocp_A 18 KDLIKEAILDNDFMKNLELSQIQEIVDCMYPVEYGKDSCIIKEGDVGSLVYVMEDGKVEVTKEG--VKLCTMGPGKVFGE 95 (139)
T ss_dssp HHHHHHHHHHCTTTTTSCHHHHHHHHHHCEEEEECSSCEEECTTSCCCEEEEEEECCEEEEETT--EEEEEECTTCEESC
T ss_pred HHHHHHHHhcCHhhhcCCHHHHHHHHHhcEEEecCCCCEEEeCCCcCCEEEEEEeCEEEEEECC--EEEEEeCCCCEecc
Confidence 344566777766554322 222222 2223333 88999999999999999999997743 58899999999999
Q ss_pred eccccCC--ceEEEEeeeeeeee
Q psy1512 646 ISILNMG--TAGTNLIQECEDHI 666 (679)
Q Consensus 646 ~all~~~--~~t~~a~~~~~~~~ 666 (679)
.+++.+. .++++|.++|+-..
T Consensus 96 ~~~l~~~~~~~~~~a~~~~~v~~ 118 (139)
T 3ocp_A 96 LAILYNCTRTATVKTLVNVKLWA 118 (139)
T ss_dssp HHHHHCCCCSSEEEESSCEEEEE
T ss_pred HHHHCCCCcceEEEECcceEEEE
Confidence 9999887 88899988776554
No 61
>2oz6_A Virulence factor regulator; winged helix, helix-turn-helix, transcription factor, CAMP-B proteins, CAMP receptor protein; HET: CMP; 2.80A {Pseudomonas aeruginosa} SCOP: a.4.5.4 b.82.3.2
Probab=98.53 E-value=1.3e-08 Score=98.70 Aligned_cols=118 Identities=16% Similarity=0.108 Sum_probs=85.3
Q ss_pred CChhHHHHHHHhccceEeCCCCEEEEeCCeeeeEEEEeeeeEEEEEehhhHHHHHhhChhHHHHHHHHHHHHHhhhccCc
Q psy1512 462 TEAGFLCELVLRLRPVLFSPGDYICRKGNRRTASVRSVGYSDLFVLSKTDMWDVLKEYPAARVRLESIAVKRLQKYKRTP 541 (679)
Q Consensus 462 ~~~~~l~~L~~~l~~~~~~pge~I~~~Gd~r~asv~a~~~~~ly~I~~g~~~~vl~~~p~~~~~~~~~~~~~~~~~~~~~ 541 (679)
++++.+..++..++.+.|.+|++|+++||+ .+.+|+|.+|.+...... + .|. ...-.....
T Consensus 1 l~~~~l~~l~~~~~~~~~~~g~~i~~~g~~---------~~~~y~i~~G~v~~~~~~-~--~G~-------~~~~~~~~~ 61 (207)
T 2oz6_A 1 MKLKHLDKLLAHCHRRRYTAKSTIIYAGDR---------CETLFFIIKGSVTILIED-D--DGR-------EMIIGYLNS 61 (207)
T ss_dssp CCHHHHHHHHHSSEEEEECTTCEEECTTSB---------CCEEEEEEESEEEEEEEC-T--TSC-------EEEEEEEET
T ss_pred CCHHHHHHHHhhcceEEECCCCEEEcCCCC---------CCeEEEEEeCEEEEEEEC-C--CCC-------EEEEEEcCC
Confidence 578899999999999999999999999998 778999988755321100 0 000 000011123
Q ss_pred ccCCCCCCCCCCC----CcccccccccccceeecccchhHHHhhcChhHhhhhHHHHHHHh
Q psy1512 542 LEKGISPSPFPGN----RRTASVRSVGYSDLFVLSKTDMWDVLKEYPAARVRLESIAVKRL 598 (679)
Q Consensus 542 ~~~g~~~~~~~~~----~r~atv~A~~~~~l~~L~r~~f~~il~~~P~~~~~l~~~~~~rl 598 (679)
++..+..+++.+. |+.++++|.++|+++.|++++|.++++++|++...+...+.+++
T Consensus 62 g~~~G~~~~~~~~~~~~~~~~~~~A~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~l~~~~ 122 (207)
T 2oz6_A 62 GDFFGELGLFEKEGSEQERSAWVRAKVECEVAEISYAKFRELSQQDSEILYTLGSQMADRL 122 (207)
T ss_dssp TCEESCTTTCC-----CBCCSEEEESSCEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred CCCcccHHHhcCCCCCCCcceEEEECCcEEEEEECHHHHHHHHHHCHHHHHHHHHHHHHHH
Confidence 3333344566676 89999999999999999999999999999999887777665543
No 62
>3mdp_A Cyclic nucleotide-binding domain (CNMP-BD) protei; structural genomics, joint center for structural genomics; HET: MSE; 1.90A {Geobacter metallireducens}
Probab=98.49 E-value=1.2e-07 Score=85.57 Aligned_cols=63 Identities=10% Similarity=0.196 Sum_probs=51.5
Q ss_pred CceecCCCCceEEEEEeeEEEEEe--cCC-ceE---eEEcCCCCeeeeeccccCC--ceEEEEeeeeeeee
Q psy1512 604 TPLEKGEVGKEMYIVNRGRLQVVA--DNG-KTV---LATLRAGSYFGEISILNMG--TAGTNLIQECEDHI 666 (679)
Q Consensus 604 ~ii~~Ge~g~~~yiI~~G~v~v~~--~~~-~~~---i~~L~~G~~FGE~all~~~--~~t~~a~~~~~~~~ 666 (679)
.++++|+.++.+|+|.+|.|++.. .++ +.. +..+++|++|||.+++.+. .++++|.++|+-..
T Consensus 39 ~i~~~g~~~~~~y~i~~G~v~~~~~~~~g~~~~~~~~~~~~~G~~fG~~~~~~~~~~~~~~~a~~~~~~~~ 109 (142)
T 3mdp_A 39 VIFKENSKADNLMLLLEGGVELFYSNGGAGSAANSTVCSVVPGAIFGVSSLIKPYHYTSSARATKPVRVVD 109 (142)
T ss_dssp EEECTTSBCCEEEEEEESCEEEECC---------CEEEEECTTCEECGGGSSTTCBCSSEEEESSCEEEEE
T ss_pred EEEeCCCCCCcEEEEEeCEEEEEEECCCCCceEeeeEEEecCCCEechHHHcCCCCceEEEEECCcEEEEE
Confidence 889999999999999999999985 223 345 8899999999999999877 77999998876554
No 63
>1xl4_A Inward rectifier potassium channel; integral membrane protein, ION channel, inwardly rectifying channel, metal transport; 2.60A {Magnetospirillum magnetotacticum} SCOP: b.1.18.16 f.14.1.1 PDB: 1xl6_A* 2wlh_A 2wli_B 2wlj_A* 2wlk_A* 2wlm_A 2wlo_A 2wln_A 3zrs_A 2wli_A 2x6c_A* 2x6b_A* 2x6a_A*
Probab=98.49 E-value=3.4e-07 Score=93.72 Aligned_cols=79 Identities=18% Similarity=0.183 Sum_probs=62.2
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCCCCcccCCCCCchhhhhhHHHHHHHHHHhhccc--CCcCCCCchhHHHHHHHHHHHH
Q psy1512 238 YLLVIFHWNGCLYHIIYKNDGFGSRNWVYGDSDTTDVVKQYLQSYYWCTLALTTIG--DLPRPRSKGEYFFVIVQLLFGL 315 (679)
Q Consensus 238 ~~l~~~H~~aCl~~~i~~~~~~~~~~Wi~~~~~~~~~~~~Y~~slywa~~tlttvG--di~~p~t~~e~i~~i~~~i~G~ 315 (679)
..+++..++|++|++..... ..+....|..|+||+++|+||+| |+ .|.+..+++++++.+++|+
T Consensus 56 ~~~~~~l~fa~ly~~~~~~~-------------~~~~~~s~~~a~yfs~vT~tTvGYGDi-~P~t~~gr~~~~~~~l~G~ 121 (301)
T 1xl4_A 56 LYLVTNALFALAYLACGDVI-------------ENARPGSFTDAFFFSVQTMATIGYGKL-IPIGPLANTLVTLEALCGM 121 (301)
T ss_dssp HHHHHHHHHHHHHHHTCSCS-------------TTSCTTCHHHHHHHHHHHHTTCCCSSS-CCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhcccc-------------CCCCcCCHHHHHHHhhhheeccCCCCC-cCCCHHHHHHHHHHHHHHH
Confidence 33455577888876654111 01124579999999999999997 99 6999999999999999999
Q ss_pred HHHHHHHHHHHHHHH
Q psy1512 316 LLFATVLGHVANIVT 330 (679)
Q Consensus 316 ~~~a~~ig~i~~ii~ 330 (679)
+++|+++|.+.+.+.
T Consensus 122 ~~~a~~~g~v~~~~~ 136 (301)
T 1xl4_A 122 LGLAVAASLIYARFT 136 (301)
T ss_dssp HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999998877663
No 64
>3pna_A CAMP-dependent protein kinase type I-alpha regula subunit; beta-barrel, CAMP-binding, catalytic subunit, transferase; HET: CMP; 1.50A {Bos taurus} PDB: 3fhi_B* 3iia_A 3plq_A* 1u7e_B* 3pvb_B*
Probab=98.48 E-value=1.3e-07 Score=87.21 Aligned_cols=91 Identities=12% Similarity=0.234 Sum_probs=67.5
Q ss_pred chhHHHhhcChhHhhhhHH---HHHHH--hhhcC--CCceecCCCCceEEEEEeeEEEEEecCCceEeEEcCCCCeeeee
Q psy1512 574 TDMWDVLKEYPAARVRLES---IAVKR--LQKYK--RTPLEKGEVGKEMYIVNRGRLQVVADNGKTVLATLRAGSYFGEI 646 (679)
Q Consensus 574 ~~f~~il~~~P~~~~~l~~---~~~~r--l~~~~--~~ii~~Ge~g~~~yiI~~G~v~v~~~~~~~~i~~L~~G~~FGE~ 646 (679)
+.+.+++++.|.+...-.+ .+... ...+. ..++++|+.++.+|+|.+|.|++..+ .+.+..+++|++|||.
T Consensus 34 ~~~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~~--~~~~~~~~~G~~fGe~ 111 (154)
T 3pna_A 34 AALAKAIEKNVLFSHLDDNERSDIFDAMFPVSFIAGETVIQQGDEGDNFYVIDQGEMDVYVN--NEWATSVGEGGSFGEL 111 (154)
T ss_dssp HHHHHHHHHCGGGTTCCHHHHHHHHHHCEEEEECTTCEEECTTSCCCEEEEEEESCEEEEET--TEEEEEECTTCEECCH
T ss_pred HHHHHHHHhChhhhhCCHHHHHHHHHhceEEEECCCCEEEeCCCCCCeEEEEEecEEEEEEC--CEEEEEecCCCEeeeh
Confidence 4566677777766542222 22222 22222 38899999999999999999999984 3578899999999999
Q ss_pred ccccCC--ceEEEEeeeeeeee
Q psy1512 647 SILNMG--TAGTNLIQECEDHI 666 (679)
Q Consensus 647 all~~~--~~t~~a~~~~~~~~ 666 (679)
+++.+. .++++|.++|+-..
T Consensus 112 ~~~~~~~~~~~v~A~~~~~~~~ 133 (154)
T 3pna_A 112 ALIYGTPRAATVKAKTNVKLWG 133 (154)
T ss_dssp HHHHCCCCSSEEEESSCEEEEE
T ss_pred HhhcCCCcceEEEECcceEEEE
Confidence 999877 88999998876544
No 65
>3kcc_A Catabolite gene activator; helix-turn-helix, CAMP, CAMP-binding, DNA-binding nucleotide-binding, transcription, transcription regulation; HET: CMP; 1.66A {Escherichia coli}
Probab=98.47 E-value=1.9e-08 Score=101.68 Aligned_cols=121 Identities=14% Similarity=0.131 Sum_probs=86.5
Q ss_pred ccCChhHHHHHHHhccceEeCCCCEEEEeCCeeeeEEEEeeeeEEEEEehhhHHHHHhhChhHHHHHHHHHHHHHhhhcc
Q psy1512 460 QNTEAGFLCELVLRLRPVLFSPGDYICRKGNRRTASVRSVGYSDLFVLSKTDMWDVLKEYPAARVRLESIAVKRLQKYKR 539 (679)
Q Consensus 460 ~~~~~~~l~~L~~~l~~~~~~pge~I~~~Gd~r~asv~a~~~~~ly~I~~g~~~~vl~~~p~~~~~~~~~~~~~~~~~~~ 539 (679)
..++++.+..++..++.+.|.+|++|+++||+ .+.+|+|.+|.+...... + .|. ...-...
T Consensus 55 ~~l~~~~l~~l~~~~~~~~~~~ge~i~~~G~~---------~~~~y~I~~G~v~~~~~~-~--~G~-------e~~~~~~ 115 (260)
T 3kcc_A 55 KPQTDPTLEWFLSHCHIHKYPSKSTLIHQGEK---------AETLYYIVKGSVAVLIKD-E--EGK-------EMILSYL 115 (260)
T ss_dssp ----CHHHHHHHTTSEEEEECTTCEEECTTCB---------CCEEEEEEECEEEEEEEC-T--TCC-------EEEEEEE
T ss_pred CCCCHHHHHHHHhhCEEEEECCCCEEECCCCc---------CCeEEEEEeCEEEEEEEC-C--CCC-------EEEEEEc
Confidence 55899999999999999999999999999998 778999988755322110 0 000 0000112
Q ss_pred CcccCCCCCCCCCCC-CcccccccccccceeecccchhHHHhhcChhHhhhhHHHHHHHhh
Q psy1512 540 TPLEKGISPSPFPGN-RRTASVRSVGYSDLFVLSKTDMWDVLKEYPAARVRLESIAVKRLQ 599 (679)
Q Consensus 540 ~~~~~g~~~~~~~~~-~r~atv~A~~~~~l~~L~r~~f~~il~~~P~~~~~l~~~~~~rl~ 599 (679)
..++..+..+++.+. |+.++++|.++|+++.|++++|.+++.++|++...+...+.+++.
T Consensus 116 ~~G~~~Ge~~~~~~~~~~~~~~~A~~~~~l~~i~~~~~~~l~~~~p~l~~~l~~~l~~~l~ 176 (260)
T 3kcc_A 116 NQGDFIGELGLFEEGQERSAWVRAKTACEVAEISYKKFRQLIQVNPDILMRLSAQMARRLQ 176 (260)
T ss_dssp ETTCEESCTTTTSTTCBCCSEEEESSCEEEEEEEHHHHHHHHHHCTHHHHHHHHHHHHHHH
T ss_pred CCCCEEeehHHhCCCCCCceEEEECCCeEEEEEcHHHHHHHHHHCHHHHHHHHHHHHHHHH
Confidence 233333444566666 899999999999999999999999999999998877776655433
No 66
>3bpz_A Potassium/sodium hyperpolarization-activated cyclic nucleotide-gated channel 2; CNBD, C-linker, pacemaker, HCN, HCN2, CAP, PKA, CAMP, ION channel; HET: CMP; 1.65A {Mus musculus} PDB: 3ffq_A 1q3e_A* 1q43_A* 1q5o_A* 3u10_A* 2q0a_A* 3etq_A* 3u11_A* 3otf_A* 3u0z_A*
Probab=98.47 E-value=1.2e-07 Score=91.72 Aligned_cols=90 Identities=26% Similarity=0.468 Sum_probs=64.8
Q ss_pred hhHHHhhcChhHhhh---hHHHHHHHh--hhc--CCCceecCCCCceEEEEEeeEEEEEecCCceEeEEcCCCCeeeeec
Q psy1512 575 DMWDVLKEYPAARVR---LESIAVKRL--QKY--KRTPLEKGEVGKEMYIVNRGRLQVVADNGKTVLATLRAGSYFGEIS 647 (679)
Q Consensus 575 ~f~~il~~~P~~~~~---l~~~~~~rl--~~~--~~~ii~~Ge~g~~~yiI~~G~v~v~~~~~~~~i~~L~~G~~FGE~a 647 (679)
....++++.|.+... ....+...+ ..+ +..|+++|+.++.+|||.+|.|++...++.. ..+++|++|||.+
T Consensus 69 ~~~~~l~~~~~f~~l~~~~l~~l~~~~~~~~~~~ge~I~~~g~~~~~ly~I~~G~v~v~~~~g~~--~~l~~G~~fGe~~ 146 (202)
T 3bpz_A 69 NCRKLVASMPLFANADPNFVTAMLTKLKFEVFQPGDYIIREGTIGKKMYFIQHGVVSVLTKGNKE--MKLSDGSYFGEIC 146 (202)
T ss_dssp HTHHHHHTCHHHHTSCHHHHHHHHHHCEEEEECTTCEEECTTSBCCEEEEEEECEEEEECTTSCC--EEEETTCEECHHH
T ss_pred HHHHHHhcCCchhcCCHHHHHHHHHhCCceEECCCCEEEECCCcCCeEEEEeccEEEEEECCCeE--EEEcCCCEeccHH
Confidence 345667777766532 222222222 222 2288999999999999999999998765543 3799999999999
Q ss_pred cccCC--ceEEEEeeeeeeee
Q psy1512 648 ILNMG--TAGTNLIQECEDHI 666 (679)
Q Consensus 648 ll~~~--~~t~~a~~~~~~~~ 666 (679)
++.+. .++|+|.++|+-..
T Consensus 147 ~~~~~~~~~~v~a~~~~~l~~ 167 (202)
T 3bpz_A 147 LLTRGRRTASVRADTYCRLYS 167 (202)
T ss_dssp HHHCSBCSSEEEESSCEEEEE
T ss_pred HhcCCCcccEEEEeeEEEEEE
Confidence 99987 88899887776544
No 67
>4f8a_A Potassium voltage-gated channel subfamily H membe; probable regulatory domain of potassium channel, membrane PR transport protein; 2.20A {Mus musculus}
Probab=98.44 E-value=2.9e-07 Score=84.96 Aligned_cols=90 Identities=24% Similarity=0.340 Sum_probs=66.1
Q ss_pred hhHHHhhcChhHhhhhHHH---HHH--Hhhhc--CCCceecCCCCceEEEEEeeEEEEEecCCceEeEEcCCCCeeeeec
Q psy1512 575 DMWDVLKEYPAARVRLESI---AVK--RLQKY--KRTPLEKGEVGKEMYIVNRGRLQVVADNGKTVLATLRAGSYFGEIS 647 (679)
Q Consensus 575 ~f~~il~~~P~~~~~l~~~---~~~--rl~~~--~~~ii~~Ge~g~~~yiI~~G~v~v~~~~~~~~i~~L~~G~~FGE~a 647 (679)
...+++++.|.+...-... +.. +.+.+ +..++++|+.++.+|+|.+|.|++... +..+..+++|++|||.+
T Consensus 24 ~~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~--~~~~~~~~~G~~fG~~~ 101 (160)
T 4f8a_A 24 LNRKVFKEHPAFRLASDGCLRALAMEFQTVHCAPGDLIYHAGESVDSLCFVVSGSLEVIQD--DEVVAILGKGDVFGDVF 101 (160)
T ss_dssp HTHHHHTTCGGGTTCCHHHHHHHHTTCEEEEECTTCEEECTTSBCCEEEEEEESEEEEEET--TEEEEEEETTCEEECCT
T ss_pred HHHHHHHhCHhhhhCCHHHHHHHHHhceeeeeCCCCEEEeCCCCccEEEEEEeeEEEEEEC--CEEEEEecCCCEeCcHH
Confidence 3455667777664322222 222 12222 238899999999999999999999874 46899999999999999
Q ss_pred cccC--C--ceEEEEeeeeeeee
Q psy1512 648 ILNM--G--TAGTNLIQECEDHI 666 (679)
Q Consensus 648 ll~~--~--~~t~~a~~~~~~~~ 666 (679)
++.+ . .++++|.++|+-..
T Consensus 102 ~~~~~~~~~~~~~~a~~~~~v~~ 124 (160)
T 4f8a_A 102 WKEATLAQSCANVRALTYCDLHV 124 (160)
T ss_dssp TTCSSCCBCSSEEEESSCEEEEE
T ss_pred HhcCcccceEEEEEECCceEEEE
Confidence 9987 4 88999998876554
No 68
>2kyh_A KVAP, voltage-gated potassium channel; ION channel, membrane protein; NMR {Aeropyrum pernix}
Probab=98.43 E-value=4e-07 Score=82.87 Aligned_cols=79 Identities=19% Similarity=0.244 Sum_probs=60.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcccccccchhhHHHHHHHHHHHHHHHHHhhheeEEEECCeEeeCHHHHHHHHhcCCCc
Q psy1512 100 YWSMIVSLAFLYNFWVIIYRFAFQEINRESLVIWFCLDYMADLMYVIDILIHFRTGYLEDGVLQTDSTKLRDHYMNSTTF 179 (679)
Q Consensus 100 ~W~~i~~~~~~~~~~~ip~~~~F~~~~~~~~~~~~~~~~i~d~~f~~Di~l~f~t~y~~~g~~v~d~~~I~~~Ylks~~f 179 (679)
.|+.++.++++.+.+++.+..... .+.+....+..+|.++.++|.+|+++++..+ .-+++|+|+ .
T Consensus 22 ~f~~~i~~lil~sv~~v~~et~~~-i~~~~~~~~~~id~~~~~iF~~Ey~lRl~~a------------~~k~~f~~~--~ 86 (147)
T 2kyh_A 22 LVELGVSYAALLSVIVVVVEYTMQ-LSGEYLVRLYLVDLILVIILWADYAYRAYKS------------GDPAGYVKK--T 86 (147)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------TCHHHHHHH--S
T ss_pred hHHHHHHHHHHHHHHHHHHHHhHh-hchhHHHHHHHHHHHHHHHHHHHHHHHHHHC------------CcHHHHHHH--H
Confidence 578888888888888877765543 2222334456799999999999999999876 125689985 7
Q ss_pred eehhhhccchHHHH
Q psy1512 180 YIDCLCLLPLDFLY 193 (679)
Q Consensus 180 ~~Dlls~lP~~~~~ 193 (679)
++|+++++|+....
T Consensus 87 iiDllailP~~~~~ 100 (147)
T 2kyh_A 87 LYEIPALVPAGLLA 100 (147)
T ss_dssp TTTHHHHCCHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 89999999987554
No 69
>3gyd_A CNMP-BD protein, cyclic nucleotide-binding domain; nucleotide binding protein, structural genomics; HET: MSE CMP; 1.79A {Methylobacillus flagellatus KT}
Probab=98.43 E-value=2.2e-07 Score=88.73 Aligned_cols=94 Identities=15% Similarity=0.210 Sum_probs=68.8
Q ss_pred cchhHHHhhcChhHhhhhHHHH---HH--Hhhhc--CCCceecCCCCceEEEEEeeEEEEEec--CC-ceEeEEcCCCCe
Q psy1512 573 KTDMWDVLKEYPAARVRLESIA---VK--RLQKY--KRTPLEKGEVGKEMYIVNRGRLQVVAD--NG-KTVLATLRAGSY 642 (679)
Q Consensus 573 r~~f~~il~~~P~~~~~l~~~~---~~--rl~~~--~~~ii~~Ge~g~~~yiI~~G~v~v~~~--~~-~~~i~~L~~G~~ 642 (679)
.++..+++++.|-+...-.+.+ .. +.+.+ +..++++|+.++.+|+|.+|.|++... +| +..+..+++|++
T Consensus 34 ~~~~~~~L~~~~~f~~l~~~~l~~l~~~~~~~~~~~ge~i~~~G~~~~~ly~I~~G~v~v~~~~~~g~~~~~~~~~~G~~ 113 (187)
T 3gyd_A 34 FEEILEIVNKIKLFGDFSNEEVRYLCSYMQCYAAPRDCQLLTEGDPGDYLLLILTGEVNVIKDIPNKGIQTIAKVGAGAI 113 (187)
T ss_dssp HHHHHHHHTTCCSSCCCCHHHHHHHHTTCEEEEECTTCEEECTTSCCCEEEEEEEEEEEEEEEETTTEEEEEEEEETTCE
T ss_pred HHHHHHHHhcCHhhhcCCHHHHHHHHHhcEEEEeCCCCEEEcCCCCCCeEEEEEeCEEEEEEECCCCCeEEEEEccCCCe
Confidence 3456777777776654322222 22 22222 238899999999999999999999862 33 457889999999
Q ss_pred eeeeccccCC--ceEEEEeeeeeeee
Q psy1512 643 FGEISILNMG--TAGTNLIQECEDHI 666 (679)
Q Consensus 643 FGE~all~~~--~~t~~a~~~~~~~~ 666 (679)
|||.+++.+. .++++|.++|+-..
T Consensus 114 fGe~~~l~~~~~~~~v~A~~~~~v~~ 139 (187)
T 3gyd_A 114 IGEMSMIDGMPRSASCVASLPTDFAV 139 (187)
T ss_dssp ESHHHHHHCCCCSSEEEEEEEEEEEE
T ss_pred eeeHHHhCCCCeeEEEEECCCeEEEE
Confidence 9999999877 88999998876554
No 70
>1o5l_A Transcriptional regulator, CRP family; TM1171, structural GE JCSG, PSI, protein structure initiative, joint center for S genomics; 2.30A {Thermotoga maritima} SCOP: b.82.3.2
Probab=98.40 E-value=1.5e-08 Score=99.01 Aligned_cols=127 Identities=13% Similarity=0.116 Sum_probs=84.8
Q ss_pred cccccccCChhHHHHHHHhccceEeCCCCEEEEeCCeeeeEEEEeeeeEEEEEehhhHHHHHhhChhHHHHHHHHHHHHH
Q psy1512 455 RVEIFQNTEAGFLCELVLRLRPVLFSPGDYICRKGNRRTASVRSVGYSDLFVLSKTDMWDVLKEYPAARVRLESIAVKRL 534 (679)
Q Consensus 455 ~i~lF~~~~~~~l~~L~~~l~~~~~~pge~I~~~Gd~r~asv~a~~~~~ly~I~~g~~~~vl~~~p~~~~~~~~~~~~~~ 534 (679)
+-|.|...++.....+...++.+.|.+|++|+++||+ .+.+|+|.+|.+...... + .|. ..
T Consensus 3 ~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~i~~~G~~---------~~~~y~v~~G~v~~~~~~-~--~G~-------~~ 63 (213)
T 1o5l_A 3 SDKIHHHHHHMDLKKLLPCGKVIVFRKGEIVKHQDDP---------IEDVLILLEGTLKTEHVS-E--NGK-------TL 63 (213)
T ss_dssp ----------CCGGGGGGGSEEEEECTTCEEECTTCB---------CCEEEEEEESCEEEEEEC-T--TSC-------EE
T ss_pred ccccchhhccCCHHHHhcccEEEEECCCCEEEcCCCc---------cceEEEEEeeEEEEEEEC-C--CCC-------EE
Confidence 3477888899999999999999999999999999998 678999987754321100 0 000 00
Q ss_pred hhhccCcccCCCCCCCCCCC-CcccccccccccceeecccchhHHHhhcChhHhhhhHHHHHHHhhh
Q psy1512 535 QKYKRTPLEKGISPSPFPGN-RRTASVRSVGYSDLFVLSKTDMWDVLKEYPAARVRLESIAVKRLQK 600 (679)
Q Consensus 535 ~~~~~~~~~~g~~~~~~~~~-~r~atv~A~~~~~l~~L~r~~f~~il~~~P~~~~~l~~~~~~rl~~ 600 (679)
.-.....++..+..+++.+. ++.++++|.++|+++.|++++|.++++++|++...+...+.+++..
T Consensus 64 ~~~~~~~G~~~G~~~~~~~~~~~~~~~~A~~~~~v~~i~~~~~~~l~~~~p~~~~~l~~~l~~~~~~ 130 (213)
T 1o5l_A 64 EIDEIKPVQIIASGFIFSSEPRFPVNVVAGENSKILSIPKEVFLDLLMKDRELLLFFLKDVSEHFRV 130 (213)
T ss_dssp EEEEECSSEESSGGGTTSSSCBCSSEEEESSSEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHHHHHH
T ss_pred EEEEecCCCEeeeHHHhcCCCCceEEEEEccceEEEEEeHHHHHHHHHHCHHHHHHHHHHHHHHHHH
Confidence 00112233333333445555 9999999999999999999999999999999988887776665443
No 71
>3ukn_A Novel protein similar to vertebrate potassium VOL channel, subfamily H (EAG-related)...; KCNH, ELK, ERG, CNBD, CNBHD, C-linker, ION channel; 2.20A {Danio rerio} PDB: 3ukt_B 3ukv_B
Probab=98.37 E-value=2.1e-07 Score=90.71 Aligned_cols=64 Identities=27% Similarity=0.420 Sum_probs=54.6
Q ss_pred cCCCceecCCCCceEEEEEeeEEEEEecCCceEeEEcCCCCeeeeeccccCC----ceEEEEeeeeeeee
Q psy1512 601 YKRTPLEKGEVGKEMYIVNRGRLQVVADNGKTVLATLRAGSYFGEISILNMG----TAGTNLIQECEDHI 666 (679)
Q Consensus 601 ~~~~ii~~Ge~g~~~yiI~~G~v~v~~~~~~~~i~~L~~G~~FGE~all~~~----~~t~~a~~~~~~~~ 666 (679)
.+..|+++|+.++.+|+|.+|+|++..++ ..+..+++|++|||.+++.+. .+||+|.++|+-..
T Consensus 105 ~ge~I~~~G~~~~~ly~I~~G~v~v~~~~--~~~~~l~~G~~fGe~~~~~~~~~~~~~~v~a~~~~~l~~ 172 (212)
T 3ukn_A 105 PGEFLIRQGDALQAIYFVCSGSMEVLKDN--TVLAILGKGDLIGSDSLTKEQVIKTNANVKALTYCDLQY 172 (212)
T ss_dssp TTCEEECTTSBCCEEEEEEECCEEEESSS--CEEEEECTTCEEECSCCSSSSCCBBCSEEEESSCEEEEE
T ss_pred CCCEEEECCCcccEEEEEEecEEEEEECC--eEEEEecCCCCcCcHHhccCCCCCcceEEEEcccEEEEE
Confidence 33489999999999999999999999742 679999999999999999874 68888887776544
No 72
>2d93_A RAP guanine nucleotide exchange factor 6; CNMP_binding domain, PDZ domain containing guanine nucleotide exchange factor 2, PDZ-GEF2, RA-GEF-2; NMR {Homo sapiens}
Probab=98.36 E-value=1.2e-07 Score=84.99 Aligned_cols=63 Identities=21% Similarity=0.346 Sum_probs=52.2
Q ss_pred CCCceecCCCCceEEEEEeeEEEEEecCCceEeEEcCCCCeeeeeccccCC--ceEE-EEeeeeeeee
Q psy1512 602 KRTPLEKGEVGKEMYIVNRGRLQVVADNGKTVLATLRAGSYFGEISILNMG--TAGT-NLIQECEDHI 666 (679)
Q Consensus 602 ~~~ii~~Ge~g~~~yiI~~G~v~v~~~~~~~~i~~L~~G~~FGE~all~~~--~~t~-~a~~~~~~~~ 666 (679)
...++++|+.++.+|+|.+|.|++.+.++.. ..+++|++|||.+++.+. .+++ .|.++|+-..
T Consensus 48 g~~i~~~g~~~~~~y~i~~G~v~~~~~~g~~--~~l~~G~~fG~~~~~~~~~~~~~~~~a~~~~~~~~ 113 (134)
T 2d93_A 48 GAIILEDGQELDSWYVILNGTVEISHPDGKV--ENLFMGNSFGITPTLDKQYMHGIVRTKVDDCQFVC 113 (134)
T ss_dssp SCEEECTTCEECEEEECCBSCEEEECSSSCE--EEECTTCEESCCSSSCCEECCSEEEESSSSEEEEE
T ss_pred CCEEEeCCCCCCeEEEEEeCEEEEEcCCCcE--EEecCCCccChhHhcCCCcceeEEEEEecceEEEE
Confidence 3388999999999999999999999865543 679999999999999988 4566 7777665544
No 73
>2pqq_A Putative transcriptional regulator; APC7345, streptomyces coelicolor structural genomics, PSI-2, protein structure initiative; 2.00A {Streptomyces coelicolor A3}
Probab=98.36 E-value=6.1e-07 Score=81.55 Aligned_cols=63 Identities=24% Similarity=0.476 Sum_probs=54.4
Q ss_pred CceecCCCCceEEEEEeeEEEEEec---CCceEeEEcCCCCeeeeeccccCC--ceEEEEeeeeeeee
Q psy1512 604 TPLEKGEVGKEMYIVNRGRLQVVAD---NGKTVLATLRAGSYFGEISILNMG--TAGTNLIQECEDHI 666 (679)
Q Consensus 604 ~ii~~Ge~g~~~yiI~~G~v~v~~~---~~~~~i~~L~~G~~FGE~all~~~--~~t~~a~~~~~~~~ 666 (679)
.++++|+.++.+|+|.+|.|++... +.+..+..+++|++|||.+++.+. .++++|.++|+-..
T Consensus 38 ~i~~~g~~~~~~y~i~~G~v~~~~~~~~g~~~~~~~~~~g~~~G~~~~~~~~~~~~~~~a~~~~~~~~ 105 (149)
T 2pqq_A 38 TLFHEGDPGDRLYVVTEGKVKLHRTSPDGRENMLAVVGPSELIGELSLFDPGPRTATGTALTEVKLLA 105 (149)
T ss_dssp EEECTTSEECEEEEEEESCEEEEEECTTSSEEEEEEECTTCEESGGGGTSCEECSSEEEESSCEEEEE
T ss_pred EEECCCCCCCeEEEEEecEEEEEEECCCCcEEEEEEcCCcCEechHHhcCCCCcceEEEEccceEEEE
Confidence 8899999999999999999999862 344568999999999999999887 88899988776555
No 74
>1p7b_A Integral membrane channel and cytosolic domains; transmembrane helices, ION conduction, immunoglobulin fold, assembly; 3.65A {Burkholderia pseudomallei} SCOP: b.1.18.16 f.14.1.1 PDB: 2wll_B* 2wll_A*
Probab=98.34 E-value=6.6e-07 Score=92.54 Aligned_cols=55 Identities=16% Similarity=0.350 Sum_probs=50.8
Q ss_pred hhhHHHHHHHHHHhhccc--CCcCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1512 276 KQYLQSYYWCTLALTTIG--DLPRPRSKGEYFFVIVQLLFGLLLFATVLGHVANIVTS 331 (679)
Q Consensus 276 ~~Y~~slywa~~tlttvG--di~~p~t~~e~i~~i~~~i~G~~~~a~~ig~i~~ii~~ 331 (679)
..|..|+||+++|+||+| |+ .|.+..+++++++.+++|++++|+++|.+.+.+..
T Consensus 95 ~s~~~a~yfs~vT~tTVGYGDi-~P~t~~gr~~~~~~~l~G~~~~a~~ig~i~~~~~~ 151 (333)
T 1p7b_A 95 PGFVGAFFFSVETLATVGYGDM-HPQTVYAHAIATLEIFVGMSGIALSTGLVFARFAR 151 (333)
T ss_dssp SSTHHHHHHHTTTTTTCCCSCC-CCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS
T ss_pred CcHHHhHhhhheeeeecCCCCC-cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 468999999999999997 99 69999999999999999999999999999887754
No 75
>3e6c_C CPRK, cyclic nucleotide-binding protein; CPRK, halorespiration; HET: DNA 3C4; 1.80A {Desulfitobacterium hafniense} SCOP: a.4.5.4 b.82.3.2 PDB: 3e6b_A* 3e5u_C* 3e6d_A 3e5x_A* 3e5q_A 2h6b_A* 2h6c_A
Probab=98.34 E-value=3.8e-08 Score=98.69 Aligned_cols=126 Identities=7% Similarity=-0.074 Sum_probs=91.0
Q ss_pred hhccccccccCChhHHHHHHHhccceEeCCCCEEEEeCCeeeeEEEEeeeeEEEEEehhhHHHHHhhChhHHHHHHHHHH
Q psy1512 452 TLKRVEIFQNTEAGFLCELVLRLRPVLFSPGDYICRKGNRRTASVRSVGYSDLFVLSKTDMWDVLKEYPAARVRLESIAV 531 (679)
Q Consensus 452 ~l~~i~lF~~~~~~~l~~L~~~l~~~~~~pge~I~~~Gd~r~asv~a~~~~~ly~I~~g~~~~vl~~~p~~~~~~~~~~~ 531 (679)
++.+..-|..++++.+..++..++.+.|.+|++|+++||+ .+.+|+|.+|.+...... + .|.
T Consensus 10 ~~~~~~p~~~l~~~~l~~l~~~~~~~~~~~g~~i~~~G~~---------~~~~y~i~~G~v~~~~~~-~--~G~------ 71 (250)
T 3e6c_C 10 FCGAIIPDNFFPIEKLRNYTQMGLIRDFAKGSAVIMPGEE---------ITSMIFLVEGKIKLDIIF-E--DGS------ 71 (250)
T ss_dssp CCCCSSSBSCSCCGGGGGGGGGSEEEEECTTCEEECTTCC---------CCSEEEEEESCEEEEEEC-T--TSC------
T ss_pred hhhhccchhhCCHHHHHHHHhhCeEEEECCCCEEECCCCC---------CCeEEEEEeeEEEEEEEC-C--CCC------
Confidence 3344444488999999999999999999999999999998 778999987754321100 0 000
Q ss_pred HHHhhhccCcccCCCCCCCCCCCCcccccccccccceeecccchhHHHhhcChhHhhhhHHHHHHHhh
Q psy1512 532 KRLQKYKRTPLEKGISPSPFPGNRRTASVRSVGYSDLFVLSKTDMWDVLKEYPAARVRLESIAVKRLQ 599 (679)
Q Consensus 532 ~~~~~~~~~~~~~g~~~~~~~~~~r~atv~A~~~~~l~~L~r~~f~~il~~~P~~~~~l~~~~~~rl~ 599 (679)
...-.....++..+. ++.+. +.++++|.++|+++.|++++|.+++.++|++...+...+.+++.
T Consensus 72 -~~~~~~~~~G~~~G~--~l~~~-~~~~~~A~~~~~v~~i~~~~~~~l~~~~p~~~~~l~~~l~~~l~ 135 (250)
T 3e6c_C 72 -EKLLYYAGGNSLIGK--LYPTG-NNIYATAMEPTRTCWFSEKSLRTVFRTDEDMIFEIFKNYLTKVA 135 (250)
T ss_dssp -EEEEEEECTTCEECC--CSCCS-CCEEEEESSSEEEEEECHHHHHHHHHHCTHHHHHHHHHHHHHHH
T ss_pred -EEEEEEecCCCEEee--ecCCC-CceEEEEcccEEEEEEcHHHHHHHHHHCHHHHHHHHHHHHHHHH
Confidence 000001122333233 56677 99999999999999999999999999999998888777666443
No 76
>1ors_C Potassium channel; voltage-dependent, voltage sensor, KVAP, FAB complex, membrane protein; 1.90A {Aeropyrum pernix} SCOP: f.14.1.1
Probab=98.33 E-value=1.2e-06 Score=78.41 Aligned_cols=103 Identities=23% Similarity=0.304 Sum_probs=67.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhcccccccchhhHHHHHHHHHHHHHHHHHhhheeEEEECCeEeeCHHHHHHHHhcCCC
Q psy1512 99 YYWSMIVSLAFLYNFWVIIYRFAFQEINRESLVIWFCLDYMADLMYVIDILIHFRTGYLEDGVLQTDSTKLRDHYMNSTT 178 (679)
Q Consensus 99 ~~W~~i~~~~~~~~~~~ip~~~~F~~~~~~~~~~~~~~~~i~d~~f~~Di~l~f~t~y~~~g~~v~d~~~I~~~Ylks~~ 178 (679)
..++.+++++++.+.+.+..+.. +..+......+..+|.++.++|.+|+++++..+ .-.++|++ |
T Consensus 6 ~~f~~~i~~lIlls~~~~~~et~-~~~~~~~~~~l~~~d~~~~~iFt~E~~lRl~~~------------~~~~~y~~--~ 70 (132)
T 1ors_C 6 PLVELGVSYAALLSVIVVVVEYT-MQLSGEYLVRLYLVDLILVIILWADYAYRAYKS------------GDPAGYVK--K 70 (132)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH-SCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHT------------TSTTTTTT--T
T ss_pred HHHHHHHHHHHHHHHHHHHHHhc-hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHC------------CCHHHHHH--H
Confidence 45788888888888877766533 222323334456799999999999999999764 11468998 9
Q ss_pred ceehhhhccchHHHHHhhhhHHHHHHHHHHHHHHHHHH
Q psy1512 179 FYIDCLCLLPLDFLYLSIGFNSILRLFRLVKIYRFWAF 216 (679)
Q Consensus 179 f~~Dlls~lP~~~~~~~~~~~~~lrl~rllrl~rl~~~ 216 (679)
.++|+++++|+.......+....+|++|++|++|+++.
T Consensus 71 niiDllailp~~~~~~~~~~l~~lr~lRllRv~Rvlkl 108 (132)
T 1ors_C 71 TLYEIPALVPAGLLALIEGHLAGLGLFRLVRLLRFLRI 108 (132)
T ss_dssp CGGGTGGGSCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHH
Confidence 99999999998754432111223334444444444443
No 77
>2qks_A KIR3.1-prokaryotic KIR channel chimera; G-protein gated inward rectifier, potassium channel selectivity filter, metal transport; HET: BNG; 2.20A {Burkholderia xenovorans}
Probab=98.31 E-value=2.3e-06 Score=88.16 Aligned_cols=54 Identities=15% Similarity=0.367 Sum_probs=50.3
Q ss_pred hhHHHHHHHHHHhhccc--CCcCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1512 277 QYLQSYYWCTLALTTIG--DLPRPRSKGEYFFVIVQLLFGLLLFATVLGHVANIVTS 331 (679)
Q Consensus 277 ~Y~~slywa~~tlttvG--di~~p~t~~e~i~~i~~~i~G~~~~a~~ig~i~~ii~~ 331 (679)
.|..|+||+++||||+| |+ .|.+..+++++++.+++|++++|+++|.+.+.+..
T Consensus 78 s~~~a~y~s~vT~tTVGYGDi-~P~t~~gr~~~~~~~l~G~~~~a~~~g~i~~~~~~ 133 (321)
T 2qks_A 78 GFGGAFFFSVETLATVGYGDM-HPQTVYAHWIATLEIFVGMSSIALATGCAFIKMSQ 133 (321)
T ss_dssp THHHHHHHHHHHHTTCCCCSS-CBCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred chhheeeeeeEEeccccCCCc-CcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 68899999999999997 99 69999999999999999999999999999877654
No 78
>1vp6_A CNBD, cyclic-nucleotide binding domain of mesorhizobium LOTI CNG potassium channel; dimer helical bundle beta barrel core with cyclic AMP bound; HET: CMP; 1.70A {Mesorhizobium loti} SCOP: b.82.3.2 PDB: 3cl1_A* 2k0g_A* 2kxl_A 3clp_A* 1u12_A 3co2_A
Probab=98.31 E-value=3.6e-07 Score=82.12 Aligned_cols=59 Identities=24% Similarity=0.389 Sum_probs=51.7
Q ss_pred CceecCCCCceEEEEEeeEEEEEecCCceEeEEcCCCCeeeeeccccCC--ceEEEEeeeeeeee
Q psy1512 604 TPLEKGEVGKEMYIVNRGRLQVVADNGKTVLATLRAGSYFGEISILNMG--TAGTNLIQECEDHI 666 (679)
Q Consensus 604 ~ii~~Ge~g~~~yiI~~G~v~v~~~~~~~~i~~L~~G~~FGE~all~~~--~~t~~a~~~~~~~~ 666 (679)
.++++|+.++.+|+|.+|.|++...+ ...+++|++|||.+++.+. ..+++|.++|+-..
T Consensus 44 ~i~~~g~~~~~~y~i~~G~v~~~~~~----~~~~~~G~~~G~~~~~~~~~~~~~~~a~~~~~~~~ 104 (138)
T 1vp6_A 44 VICRIGEPGDRMFFVVEGSVSVATPN----PVELGPGAFFGEMALISGEPRSATVSAATTVSLLS 104 (138)
T ss_dssp EEECTTSCCCEEEEEEESCEEECSSS----CEEECTTCEECHHHHHHCCCCSSCEEESSSEEEEE
T ss_pred EEEeCCCCcceEEEEEeeEEEEEeCC----cceECCCCEeeehHhccCCCceeEEEECCCEEEEE
Confidence 88999999999999999999998754 3479999999999999887 88999988776554
No 79
>2z69_A DNR protein; beta barrel, dimerization helix, transcription regulator; 2.10A {Pseudomonas aeruginosa}
Probab=98.31 E-value=4e-07 Score=83.42 Aligned_cols=94 Identities=11% Similarity=0.089 Sum_probs=65.1
Q ss_pred cchhHHHhhcChhHhhhhHH---HHHH--HhhhcCC--CceecCCCCceEEEEEeeEEEEEec---CCceEeEEcCCCCe
Q psy1512 573 KTDMWDVLKEYPAARVRLES---IAVK--RLQKYKR--TPLEKGEVGKEMYIVNRGRLQVVAD---NGKTVLATLRAGSY 642 (679)
Q Consensus 573 r~~f~~il~~~P~~~~~l~~---~~~~--rl~~~~~--~ii~~Ge~g~~~yiI~~G~v~v~~~---~~~~~i~~L~~G~~ 642 (679)
..+..+++++.|.+...-.+ .+.. +.+.+.+ .++++|+.++.+|+|.+|.|++... +.+..+..+++|++
T Consensus 7 ~~~~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~g~~~~~~~~~~G~~ 86 (154)
T 2z69_A 7 QRVHQQLLQSHHLFEPLSPVQLQELLASSDLVNLDKGAYVFRQGEPAHAFYYLISGCVKIYRLTPEGQEKILEVTNERNT 86 (154)
T ss_dssp HHHHHHHHTTSTTTTTSCHHHHHHHHHTCEEEEECTTCEEECTTSBCCEEEEEEESCEEEECCCC-----CCEEECTTEE
T ss_pred ChhHHHHhhcChhhcCCCHHHHHHHHhhCcEEEecCCCEEecCCCccceEEEEEeCEEEEEEECCCCCEEEEEEccCCCe
Confidence 34566677777665432222 2222 2222333 8899999999999999999999852 23456889999999
Q ss_pred eeeeccccCC---ceEEEEeeeeeeee
Q psy1512 643 FGEISILNMG---TAGTNLIQECEDHI 666 (679)
Q Consensus 643 FGE~all~~~---~~t~~a~~~~~~~~ 666 (679)
|||.+++.+. .++++|.++|+-..
T Consensus 87 ~G~~~~~~~~~~~~~~~~a~~~~~~~~ 113 (154)
T 2z69_A 87 FAEAMMFMDTPNYVATAQAVVPSQLFR 113 (154)
T ss_dssp ESGGGGGSSCSBCSSEEEESSSEEEEE
T ss_pred eccHhhccCCCCCceEEEEccceEEEE
Confidence 9999999875 67888887766544
No 80
>4ava_A Lysine acetyltransferase; allosteric regulation, domain coupling; HET: ACO; 1.70A {Mycobacterium tuberculosis} PDB: 4avb_A* 4avc_A*
Probab=98.28 E-value=6.2e-07 Score=93.82 Aligned_cols=63 Identities=24% Similarity=0.392 Sum_probs=55.4
Q ss_pred CceecCCCCceEEEEEeeEEEEEe--cCCceEeEEcCCCCeeeeeccccCC--ceEEEEeeeeeeee
Q psy1512 604 TPLEKGEVGKEMYIVNRGRLQVVA--DNGKTVLATLRAGSYFGEISILNMG--TAGTNLIQECEDHI 666 (679)
Q Consensus 604 ~ii~~Ge~g~~~yiI~~G~v~v~~--~~~~~~i~~L~~G~~FGE~all~~~--~~t~~a~~~~~~~~ 666 (679)
.++++|+.++.+|||.+|.|++.. .+++..+..+++|++|||.+++.+. .+|++|.++|+-..
T Consensus 46 ~i~~~G~~~~~~y~i~~G~v~~~~~~~~g~~~~~~~~~G~~fGe~~l~~~~~~~~~v~A~~~~~~~~ 112 (333)
T 4ava_A 46 VLLRQGEPAVSFLLISSGSAEVSHVGDDGVAIIARALPGMIVGEIALLRDSPRSATVTTIEPLTGWT 112 (333)
T ss_dssp EEECTTSBCCCEEEEEECCEEEEEECTTCCEEEEEECTTCEESHHHHHHTCBCSSEEEESSCEEEEE
T ss_pred EEEeCCCcCCEEEEEEeeEEEEEEECCCCcEEEEEecCCCEeeHHHhcCCCCceEEEEEecCEEEEE
Confidence 899999999999999999999986 3455689999999999999999988 88999988876544
No 81
>4f7z_A RAP guanine nucleotide exchange factor 4; cyclic nucleotide, regulation, auto-IN CDC25 homology domain, exocytosis; 2.60A {Mus musculus} PDB: 2byv_E
Probab=98.28 E-value=5.9e-08 Score=116.93 Aligned_cols=122 Identities=12% Similarity=0.061 Sum_probs=92.6
Q ss_pred cchHHHHHHHhhhhhhccccccccCChhHHHHHHHhccceE-eCCCCEEEEeCCeeeeEEEEeeeeEEEEEehhhHHHHH
Q psy1512 438 DKLKAEIAINVHLDTLKRVEIFQNTEAGFLCELVLRLRPVL-FSPGDYICRKGNRRTASVRSVGYSDLFVLSKTDMWDVL 516 (679)
Q Consensus 438 ~~Lr~ei~~~~~~~~l~~i~lF~~~~~~~l~~L~~~l~~~~-~~pge~I~~~Gd~r~asv~a~~~~~ly~I~~g~~~~vl 516 (679)
+.-+.+-..+...+.+.++|+|++++...+++|+..|..+. +.+|++|++|||. ++.+|+|.+|.+..+.
T Consensus 324 ~~~rt~ed~e~l~e~L~~i~~f~~Ls~~v~r~L~~~l~~~~~~kaGtvI~rQGE~---------gds~YIIlsG~V~V~~ 394 (999)
T 4f7z_A 324 PGQRTVDDLEIIYDELLHIKALSHLSTTVKRELAGVLIFESHAKGGTVLFNQGEE---------GTSWYIILKGSVNVVI 394 (999)
T ss_dssp GGGCCHHHHHHHHHHHTTCGGGTTSCHHHHHHHTTTCEEEEESSTTCEEECTTSB---------CCEEEEEEESEEEEEE
T ss_pred cccccHHHHHHHHHHHHhhHHHhcCCHHHHHHHHHhhhhheeccCCCEEEeCCCc---------CCeEEEEEeeEEEEEE
Confidence 33333334556678899999999999999999999999765 5679999999998 7899999888764321
Q ss_pred hhChhHHHHHHHHHHHHHhhhccCcccCCCCCCCCCCCCccccccccc-ccceeecccchhHHHhhc
Q psy1512 517 KEYPAARVRLESIAVKRLQKYKRTPLEKGISPSPFPGNRRTASVRSVG-YSDLFVLSKTDMWDVLKE 582 (679)
Q Consensus 517 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~r~atv~A~~-~~~l~~L~r~~f~~il~~ 582 (679)
.. .+ .-.....|+.++..+++++.||.|||+|.+ +|++++|+++||.+++++
T Consensus 395 ~~----~~----------~v~~L~~Gd~FGElALL~~~PR~aTV~a~~d~c~fl~i~k~df~~il~~ 447 (999)
T 4f7z_A 395 YG----KG----------VVCTLHEGDDFGKLALVNDAPRAASIVLREDNCHFLRVDKEDGNRILRD 447 (999)
T ss_dssp TT----TE----------EEEEEETTCEECGGGGTCSCBCSSEEEESSSSEEEEEEEHHHHHHHHHH
T ss_pred cC----Cc----------ceEEecCCCcccchhhccCCCeeEEEEEecCceEEEEeeHHHHHHHHhH
Confidence 10 00 001123444444457889999999999988 599999999999999875
No 82
>1wgp_A Probable cyclic nucleotide-gated ION channel 6; cyclic nucleotide monophosphate, CNMP, CNMP-binding, structural genomics; NMR {Arabidopsis thaliana} SCOP: b.82.3.2
Probab=98.27 E-value=3.8e-07 Score=81.90 Aligned_cols=63 Identities=25% Similarity=0.424 Sum_probs=50.8
Q ss_pred CceecCCCCceEEEEEeeEEEEEec-CC-ceEeE--EcCCCCeeeeecc---ccCC--------ceEEEEeeeeeeee
Q psy1512 604 TPLEKGEVGKEMYIVNRGRLQVVAD-NG-KTVLA--TLRAGSYFGEISI---LNMG--------TAGTNLIQECEDHI 666 (679)
Q Consensus 604 ~ii~~Ge~g~~~yiI~~G~v~v~~~-~~-~~~i~--~L~~G~~FGE~al---l~~~--------~~t~~a~~~~~~~~ 666 (679)
.++++||.++.+|+|.+|+|++... ++ +..+. .+++|++|||.++ +.+. .++++|.++|+-..
T Consensus 39 ~i~~~G~~~~~~y~i~~G~v~~~~~~~g~~~~~~~~~l~~G~~fGe~~l~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 116 (137)
T 1wgp_A 39 YLVREGDPVNEMLFIIRGRLESVTTDGGRSGFYNRSLLKEGDFCGDELLTWALDPKSGSNLPSSTRTVKALTEVEAFA 116 (137)
T ss_dssp EEECTTSBCSEEEEEEECCCEEECCSSCSSSSSCEEECCTTCBSSTHHHHHHHCSSCCSSSCBCSSEEEESSCBEEEE
T ss_pred EEEeCCCCCCeEEEEEeeEEEEEEcCCCcceeeeeeeecCCCEecHHHHHHHhccccccccccceeEEEEeEEEEEEE
Confidence 8899999999999999999997742 22 23344 9999999999996 7765 47999998877554
No 83
>3um7_A Potassium channel subfamily K member 4; potassium ION channel, metal transport; 3.31A {Homo sapiens}
Probab=98.26 E-value=2e-06 Score=87.62 Aligned_cols=75 Identities=21% Similarity=0.373 Sum_probs=59.8
Q ss_pred hhHHHHHHHHHHhhccc--CCcCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Q psy1512 277 QYLQSYYWCTLALTTIG--DLPRPRSKGEYFFVIVQLLFGLLLFATVLGHVANIVTSVSAARKEFQAKLDGVKTYMRMRR 354 (679)
Q Consensus 277 ~Y~~slywa~~tlttvG--di~~p~t~~e~i~~i~~~i~G~~~~a~~ig~i~~ii~~~~~~~~~~~~~~~~l~~~m~~~~ 354 (679)
.|..|+||+++|+||+| |+ .|.|..+++++++.+++|+.+++++++.+++.+..... ..+..++..+.+.+
T Consensus 115 ~~~~a~yf~~~t~tTvGYGdi-~P~T~~gk~~~i~~~l~Gi~~~~~~~~~i~~~l~~~~~------~~i~~le~~~~~~~ 187 (309)
T 3um7_A 115 DLGSAFFFSGTIITTIGYGNV-ALRTDAGRLFCIFYALVGIPLFGILLAGVGDRLGSSLR------HGIGHIEAIFLKWH 187 (309)
T ss_dssp SHHHHHHHHHHHHTSCCCCSS-CCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHTHHHHHHHTTTC
T ss_pred ChhhhhHhhheeeeecccCCC-CCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhh------hhHHHHHHHHhccc
Confidence 79999999999999998 99 79999999999999999999999999999998866432 22333444555555
Q ss_pred CCHH
Q psy1512 355 VPNA 358 (679)
Q Consensus 355 lp~~ 358 (679)
.++.
T Consensus 188 ~~~~ 191 (309)
T 3um7_A 188 VPPE 191 (309)
T ss_dssp --CC
T ss_pred cchh
Confidence 5543
No 84
>3fx3_A Cyclic nucleotide-binding protein; helix_TURN_helix, CAMP regulatory protein, structural genomi 2, protein structure initiative; 2.20A {Ruegeria pomeroyi} PDB: 3h3z_A*
Probab=98.25 E-value=1e-06 Score=87.27 Aligned_cols=96 Identities=17% Similarity=0.236 Sum_probs=70.9
Q ss_pred cccchhHHHhhcChhHhhhhHHHHHH-----HhhhcCC--CceecCCCCceEEEEEeeEEEEEe--cC-CceEeEEcCCC
Q psy1512 571 LSKTDMWDVLKEYPAARVRLESIAVK-----RLQKYKR--TPLEKGEVGKEMYIVNRGRLQVVA--DN-GKTVLATLRAG 640 (679)
Q Consensus 571 L~r~~f~~il~~~P~~~~~l~~~~~~-----rl~~~~~--~ii~~Ge~g~~~yiI~~G~v~v~~--~~-~~~~i~~L~~G 640 (679)
++.++..+++++.|-+...-.+.... +.+.+.+ .++++|+.++.+|+|.+|.|++.. .+ .+..+..+++|
T Consensus 4 m~~~~~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~~~~~G~~~~~~~~~~G 83 (237)
T 3fx3_A 4 MAHEAQKAIARNSLLIRSLPEQHVDALLSQAVWRSYDRGETLFLQEEKAQAIHVVIDGWVKLFRMTPTGSEAVVSVFTRG 83 (237)
T ss_dssp --CHHHHHHHTTSHHHHTSCHHHHHHHHTTCEEEEECTTCEEECTTSCCCEEEEEEESEEEEEEECTTSCEEEEEEEETT
T ss_pred cchHHHHHHHhCCHhhccCCHHHHHHHHhhCEEEEECCCCEEEcCCCccceEEEEEeeEEEEEEECCCCCEEEEEEeCCC
Confidence 34566778888888776533333222 2222233 889999999999999999999986 23 34578899999
Q ss_pred CeeeeeccccCC--ceEEEEeeeeeeee
Q psy1512 641 SYFGEISILNMG--TAGTNLIQECEDHI 666 (679)
Q Consensus 641 ~~FGE~all~~~--~~t~~a~~~~~~~~ 666 (679)
++|||.+++.+. .+++.|.++|+-..
T Consensus 84 ~~~G~~~~~~~~~~~~~~~a~~~~~v~~ 111 (237)
T 3fx3_A 84 ESFGEAVALRNTPYPVSAEAVTPCEVMH 111 (237)
T ss_dssp EEECHHHHHHTCCCSSEEEESSSEEEEE
T ss_pred CEechHHHhcCCCCCceEEECCceEEEE
Confidence 999999999876 88999998877655
No 85
>3um7_A Potassium channel subfamily K member 4; potassium ION channel, metal transport; 3.31A {Homo sapiens}
Probab=98.23 E-value=4e-06 Score=85.43 Aligned_cols=57 Identities=32% Similarity=0.470 Sum_probs=51.0
Q ss_pred hhHHHHHHHHHHhhccc--CCcCCCCchhH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1512 277 QYLQSYYWCTLALTTIG--DLPRPRSKGEY------FFVIVQLLFGLLLFATVLGHVANIVTSVSA 334 (679)
Q Consensus 277 ~Y~~slywa~~tlttvG--di~~p~t~~e~------i~~i~~~i~G~~~~a~~ig~i~~ii~~~~~ 334 (679)
.|++|+||+++|+||+| |+ .|.+..++ +++++.+++|+.+++++++.+++.+....+
T Consensus 224 ~~~da~y~~~vTltTvGyGd~-~p~t~~g~~~~~y~~~~~~~il~Gl~~~a~~~~~i~~~~~~~~~ 288 (309)
T 3um7_A 224 SKLEAIYFVIVTLTTVGFGDY-VAGADPRQDSPAYQPLVWFWILLGLAYFASVLTTIGNWLRVVSR 288 (309)
T ss_dssp CHHHHHHHHHHHHTTCCCSSC-CTTCCTTCCCSTHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTT
T ss_pred CHHHHHHHHHhheeccccCCC-CCCCccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 58999999999999998 99 69998887 599999999999999999999988776553
No 86
>3e97_A Transcriptional regulator, CRP/FNR family; YP_604437.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.86A {Deinococcus geothermalis dsm 11300}
Probab=98.18 E-value=1.5e-06 Score=85.63 Aligned_cols=63 Identities=19% Similarity=0.293 Sum_probs=53.7
Q ss_pred CceecCCCCceEEEEEeeEEEEEec--C-CceEeEEcCCCCeeeeeccccCC--ceEEEEeeeeeeee
Q psy1512 604 TPLEKGEVGKEMYIVNRGRLQVVAD--N-GKTVLATLRAGSYFGEISILNMG--TAGTNLIQECEDHI 666 (679)
Q Consensus 604 ~ii~~Ge~g~~~yiI~~G~v~v~~~--~-~~~~i~~L~~G~~FGE~all~~~--~~t~~a~~~~~~~~ 666 (679)
.++++|+.++.+|+|.+|.|++... + .+..+..+++|++|||.+++.+. .+++.|.++|+-..
T Consensus 39 ~i~~~G~~~~~~y~i~~G~v~~~~~~~~g~~~~~~~~~~g~~~G~~~~~~~~~~~~~~~a~~~~~v~~ 106 (231)
T 3e97_A 39 LVVEQDAEGEALHLVTTGVVRVSRVSLGGRERVLGDIYAPGVVGETAVLAHQERSASVRALTPVRTLM 106 (231)
T ss_dssp BCCCTTCTTTCEEEECSSEEEEEEECC--CEEEEEEEESSEEESTTTTTCCCCCCEEEEESSCEEEEE
T ss_pred EEEeCCCCCCeEEEEEecEEEEEEECCCCceEEEEecCCCCEEeeHHHhCCCCceEEEEECCcEEEEE
Confidence 8899999999999999999999862 2 34568899999999999999877 78888887776554
No 87
>3dn7_A Cyclic nucleotide binding regulatory protein; structural genomics, APC88869, cyclic nucleotide binding REG protein, PSI-2; 1.80A {Cytophaga hutchinsonii}
Probab=98.17 E-value=1.4e-06 Score=83.34 Aligned_cols=64 Identities=17% Similarity=0.267 Sum_probs=54.0
Q ss_pred CCceecCCCCceEEEEEeeEEEEEe--cCC-ceEeEEcCCCCeeeee-ccccCC--ceEEEEeeeeeeee
Q psy1512 603 RTPLEKGEVGKEMYIVNRGRLQVVA--DNG-KTVLATLRAGSYFGEI-SILNMG--TAGTNLIQECEDHI 666 (679)
Q Consensus 603 ~~ii~~Ge~g~~~yiI~~G~v~v~~--~~~-~~~i~~L~~G~~FGE~-all~~~--~~t~~a~~~~~~~~ 666 (679)
..++++|+.++.+|+|.+|.|++.. .+| +..+..+++|++|||. +++.+. .+++.|.++|+-..
T Consensus 39 ~~l~~~G~~~~~~y~i~~G~v~~~~~~~~G~e~~~~~~~~g~~~ge~~~~~~~~~~~~~~~a~~~~~v~~ 108 (194)
T 3dn7_A 39 ETLLKTGEICRINYFVVKGCLRLFFIDEKGIEQTTQFAIENWWLSDYMAFQKQQPADFYIQSVENCELLS 108 (194)
T ss_dssp CEEECTTSBCCEEEEEEESEEEEEEECTTSCEEEEEEEETTCEECCHHHHHHTCBCSSEEEESSCEEEEE
T ss_pred CEEECCCCeeeEEEEeecCeEEEEEECCCCCEEEEEEccCCcEEeehHHHhcCCCCceEEEEECCEEEEE
Confidence 3889999999999999999999986 333 4568899999999998 677776 78999998887665
No 88
>4gx0_A TRKA domain protein; membrane protein, ION channel, ADP binding, NAD binding, MEM transport protein; HET: MAL GLC; 2.60A {Geobacter sulfurreducens} PDB: 4gx1_A* 4gx2_A* 4gx5_A 4gvl_A*
Probab=98.16 E-value=6.7e-06 Score=92.56 Aligned_cols=87 Identities=20% Similarity=0.443 Sum_probs=67.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh-cCCCCCCCcccCCCCCchhhhhhHHHHHHHHHHhhccc--CCcCCCCchhHH
Q psy1512 229 LFRSSSLIHYLLVIFHWNGCLYHIIYK-NDGFGSRNWVYGDSDTTDVVKQYLQSYYWCTLALTTIG--DLPRPRSKGEYF 305 (679)
Q Consensus 229 ~~~~~~l~~~~l~~~H~~aCl~~~i~~-~~~~~~~~Wi~~~~~~~~~~~~Y~~slywa~~tlttvG--di~~p~t~~e~i 305 (679)
+.++...+..+++++++.+|+|+++.. .++ ..| .|+.|+||+++|+||+| |+ .|.|..+++
T Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~---~~~------------~~~~~~y~~~~t~tTvGygd~-~p~~~~~~~ 80 (565)
T 4gx0_A 17 LKVLLLYCAFLLVMLLAYASIFRYLMWHLEG---RAY------------SFMAGIYWTITVMTTLGFGDI-TFESDAGYL 80 (565)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---CCC------------CHHHHHHHHHHHHTTCCCCSS-CCCSHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC---CCC------------chhhhhheeeeeeeeecCCCc-CCCCccHHH
Confidence 334555666777777788888776543 221 112 57899999999999998 99 699999999
Q ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHHH
Q psy1512 306 FVIVQLLFGLLLFATVLGH-VANIVTS 331 (679)
Q Consensus 306 ~~i~~~i~G~~~~a~~ig~-i~~ii~~ 331 (679)
++++++++|++++++.++. +.+.+..
T Consensus 81 ~~~~~~~~g~~~~~~~~~~~~~~~~~~ 107 (565)
T 4gx0_A 81 FASIVTVSGVIFLDIILPFGFVSMFLA 107 (565)
T ss_dssp HHHHHHHHHHHHHHTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999998 5555543
No 89
>3b02_A Transcriptional regulator, CRP family; structural genomics, riken structural genomics/proteomics in RSGI; 1.92A {Thermus thermophilus} PDB: 2zdb_A
Probab=98.13 E-value=3.2e-06 Score=81.01 Aligned_cols=63 Identities=24% Similarity=0.347 Sum_probs=53.7
Q ss_pred CCceecCCCCceEEEEEeeEEEEEe--cC-CceEeEEcCCCCeeeeeccccCC--ceEEEEeeeeeeee
Q psy1512 603 RTPLEKGEVGKEMYIVNRGRLQVVA--DN-GKTVLATLRAGSYFGEISILNMG--TAGTNLIQECEDHI 666 (679)
Q Consensus 603 ~~ii~~Ge~g~~~yiI~~G~v~v~~--~~-~~~~i~~L~~G~~FGE~all~~~--~~t~~a~~~~~~~~ 666 (679)
..++++|+.++.+|+|.+|.|++.. .+ .+..+..+++|++||| +++.+. .+++.|.++|+-..
T Consensus 8 ~~i~~~g~~~~~~y~i~~G~v~~~~~~~~g~~~~~~~~~~G~~~Ge-~~~~~~~~~~~~~A~~~~~v~~ 75 (195)
T 3b02_A 8 ETIYLRGEEARTLYRLEEGLVRVVELLPDGRLITLRHVLPGDYFGE-EALEGKAYRYTAEAMTEAVVQG 75 (195)
T ss_dssp CEEECTTSBCCCEEEEEESCEEEEEECTTSCEEEEEEECTTCEECG-GGGTCSBCSSEEEESSSEEEEE
T ss_pred CEEECCCCCCCeEEEEEeCEEEEEEECCCCCEEEEEEecCCCEech-hhhCCCCceeEEEECCcEEEEE
Confidence 3789999999999999999999985 23 3457899999999999 999887 88999988876554
No 90
>3d0s_A Transcriptional regulatory protein; CAMP receptor protein (CRP), dimer, inactive(APO, unliganded allostery, DNA binding, cyclic AMP; 2.00A {Mycobacterium tuberculosis} PDB: 3i54_A* 3i59_A* 3mzh_A* 3h3u_A* 3r6s_A*
Probab=98.13 E-value=8.9e-07 Score=87.01 Aligned_cols=63 Identities=27% Similarity=0.529 Sum_probs=54.5
Q ss_pred CceecCCCCceEEEEEeeEEEEEec--C-CceEeEEcCCCCeeeeeccccCC--ceEEEEeeeeeeee
Q psy1512 604 TPLEKGEVGKEMYIVNRGRLQVVAD--N-GKTVLATLRAGSYFGEISILNMG--TAGTNLIQECEDHI 666 (679)
Q Consensus 604 ~ii~~Ge~g~~~yiI~~G~v~v~~~--~-~~~~i~~L~~G~~FGE~all~~~--~~t~~a~~~~~~~~ 666 (679)
.++++|+.++.+|+|.+|.|++... + .+..+..+++|++|||.+++.+. .+++.|.++|+-..
T Consensus 39 ~i~~~G~~~~~~y~i~~G~v~~~~~~~~g~~~~~~~~~~G~~~G~~~~~~~~~~~~~~~A~~~~~v~~ 106 (227)
T 3d0s_A 39 TVFAEGEPGDRLYIIISGKVKIGRRAPDGRENLLTIMGPSDMFGELSIFDPGPRTSSATTITEVRAVS 106 (227)
T ss_dssp EEECTTCCCCEEEEEEESCEEEEEECTTSCEEEEEEECTTCEESCHHHHSCSCCSSEEEESSCEEEEE
T ss_pred EEEcCCCcCCEEEEEEeeEEEEEEECCCCcEEEEEEecCCCEEeeHHHcCCCCceeEEEEcccEEEEE
Confidence 8899999999999999999999862 2 34568999999999999999877 88899998876554
No 91
>1zyb_A Transcription regulator, CRP family; NP_813211.1, structural genomics, joint center for structura genomics, JCSG; 2.15A {Bacteroides thetaiotaomicron} SCOP: a.4.5.4 b.82.3.2
Probab=98.12 E-value=3.1e-06 Score=83.56 Aligned_cols=63 Identities=17% Similarity=0.253 Sum_probs=53.9
Q ss_pred CceecCCCCceEEEEEeeEEEEEe---cCCceEeEEcCCCCeeeeeccccCC---ceEEEEeeeeeeee
Q psy1512 604 TPLEKGEVGKEMYIVNRGRLQVVA---DNGKTVLATLRAGSYFGEISILNMG---TAGTNLIQECEDHI 666 (679)
Q Consensus 604 ~ii~~Ge~g~~~yiI~~G~v~v~~---~~~~~~i~~L~~G~~FGE~all~~~---~~t~~a~~~~~~~~ 666 (679)
.++++|+.++.+|+|.+|.|++.. ++.+..+..+++|++|||.+++.+. .+++.|.++|+-..
T Consensus 53 ~i~~~G~~~~~~y~i~~G~v~~~~~~~~G~~~~l~~~~~G~~fG~~~~~~~~~~~~~~~~A~~~~~v~~ 121 (232)
T 1zyb_A 53 TIIKSGNPCTQLCFLLKGEISIVTNAKENIYTVIEQIEAPYLIEPQSLFGMNTNYASSYVAHTEVHTVC 121 (232)
T ss_dssp EEECTTSBCCEEEEEEESEEEEEEECGGGSCEEEEEEESSEEECGGGGSSSCCBCSSEEEESSCEEEEE
T ss_pred EEECCCCcccEEEEEEeeEEEEEEECCCCCEEEEEEccCCCeeeehHHhCCCCCCceEEEEccceEEEE
Confidence 889999999999999999999985 2345678999999999999999875 67888887776655
No 92
>4ev0_A Transcription regulator, CRP family; CAMP binding, winged helix-turn-helix motif, DNA binding, transcription activator; HET: CMP; 2.40A {Thermus thermophilus}
Probab=98.09 E-value=1.1e-06 Score=85.40 Aligned_cols=63 Identities=27% Similarity=0.552 Sum_probs=54.6
Q ss_pred CceecCCCCceEEEEEeeEEEEEec--C-CceEeEEcCCCCeeeeeccccCC--ceEEEEeeeeeeee
Q psy1512 604 TPLEKGEVGKEMYIVNRGRLQVVAD--N-GKTVLATLRAGSYFGEISILNMG--TAGTNLIQECEDHI 666 (679)
Q Consensus 604 ~ii~~Ge~g~~~yiI~~G~v~v~~~--~-~~~~i~~L~~G~~FGE~all~~~--~~t~~a~~~~~~~~ 666 (679)
.++++|+.++.+|+|.+|.|++... + .+..+..+++|++|||.+++.+. .+++.|.++|+-..
T Consensus 32 ~i~~~g~~~~~~y~i~~G~v~~~~~~~~g~~~~~~~~~~g~~~G~~~~~~~~~~~~~~~a~~~~~v~~ 99 (216)
T 4ev0_A 32 PIFYQGDLGQALYLVASGKVRLFRTHLGGQERTLALLGPGELFGEMSLLDEGERSASAVAVEDTELLA 99 (216)
T ss_dssp EEECTTCBCCEEEEEEESCEEEEEECSSSCEEEEEEECTTCEECHHHHHHCCBCSSEEEESSSEEEEE
T ss_pred EEEeCCCCCCEEEEEEeCEEEEEEECCCCCEEEEEEecCCCEEeehhhcCCCCcceEEEEcCCEEEEE
Confidence 8899999999999999999999862 3 34578999999999999999887 88999988876554
No 93
>2gau_A Transcriptional regulator, CRP/FNR family; structural genomics, porphyromona gingivalis, PSI, protein structure initiative; 1.90A {Porphyromonas gingivalis} SCOP: a.4.5.4 b.82.3.2
Probab=98.08 E-value=2e-06 Score=84.80 Aligned_cols=67 Identities=10% Similarity=0.299 Sum_probs=55.6
Q ss_pred hcCCCceecCCCCceEEEEEeeEEEEEe---cCCceEeEEcCCCCeeeeeccccCC--ceEEEEeeeeeeee
Q psy1512 600 KYKRTPLEKGEVGKEMYIVNRGRLQVVA---DNGKTVLATLRAGSYFGEISILNMG--TAGTNLIQECEDHI 666 (679)
Q Consensus 600 ~~~~~ii~~Ge~g~~~yiI~~G~v~v~~---~~~~~~i~~L~~G~~FGE~all~~~--~~t~~a~~~~~~~~ 666 (679)
+.+..++++|+.++.+|+|.+|.|++.. ++.+..+..+++|++|||.+++.+. .+++.|.++|+-..
T Consensus 39 ~~g~~i~~~g~~~~~~y~v~~G~v~~~~~~~~g~~~~~~~~~~G~~~G~~~~~~~~~~~~~~~A~~~~~v~~ 110 (232)
T 2gau_A 39 KKASTVFSEGDIPNNLFYLYEGKIKILREGVYGRFHISRIVKPGQFFGMRPYFAEETCSSTAIAVENSKVLA 110 (232)
T ss_dssp CTTCEEECTTCCCCEEEEEEESCEEEEC-----CCCEEEEECTTCEESHHHHHHTSCCSSEEEESSCEEEEE
T ss_pred CCCCEEEeCCCCCCeEEEEEeCEEEEEEECCCCCEEEEEEeCCCCEeeeehhhCCCCcceEEEEecceEEEE
Confidence 3344889999999999999999999985 2345678999999999999999876 88999988876654
No 94
>3iwz_A CAP-like, catabolite activation-like protein; XCC, pathogenicity, CRP, CLP, C-DI-GMP receptor, quorum SENS binding, transcription; 2.30A {Xanthomonas campestris PV}
Probab=98.07 E-value=2.1e-06 Score=84.34 Aligned_cols=65 Identities=20% Similarity=0.391 Sum_probs=54.7
Q ss_pred CCCceecCCCCceEEEEEeeEEEEEe--cC-CceEeEEcCCCCeeeeeccccCC---ceEEEEeeeeeeee
Q psy1512 602 KRTPLEKGEVGKEMYIVNRGRLQVVA--DN-GKTVLATLRAGSYFGEISILNMG---TAGTNLIQECEDHI 666 (679)
Q Consensus 602 ~~~ii~~Ge~g~~~yiI~~G~v~v~~--~~-~~~~i~~L~~G~~FGE~all~~~---~~t~~a~~~~~~~~ 666 (679)
+..++++|+.++.+|+|.+|.|++.. .+ .+..+..+++|++|||.+++.+. .+++.|.++|+-..
T Consensus 42 g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~G~~~~~~~~~~g~~~G~~~~~~~~~~~~~~~~a~~~~~v~~ 112 (230)
T 3iwz_A 42 RTDVFRPGDPAGTLYYVISGSVSIIAEEDDDRELVLGYFGSGEFVGEMGLFIESDTREVILRTRTQCELAE 112 (230)
T ss_dssp TCEEECTTSBCCEEEEEEESCEEEEEECTTSCEEEEEEECTTCEESCGGGTSCCSBCCSEEEESSCEEEEE
T ss_pred CCEEECCCCCCCeEEEEEeeEEEEEEECCCCCEEEEEEecCCCEEEehhhhcCCCCceeEEEEcCcEEEEE
Confidence 33889999999999999999999986 23 34578899999999999999874 67888988877655
No 95
>3sya_A G protein-activated inward rectifier potassium CH; ION channel, potassium channel, inward rectification, sodium PIP2 binding, G protein binding; HET: PIO; 2.98A {Mus musculus} PDB: 3syo_A 3syc_A 3syp_A 3syq_A*
Probab=98.06 E-value=1.2e-05 Score=83.03 Aligned_cols=90 Identities=14% Similarity=0.237 Sum_probs=65.4
Q ss_pred HHHHHHHHHHHHHHHHHhcCCC----CCCCcccCCCCCchhhhhhHHHHHHHHHHhhccc--CCcCCC--CchhHHHHHH
Q psy1512 238 YLLVIFHWNGCLYHIIYKNDGF----GSRNWVYGDSDTTDVVKQYLQSYYWCTLALTTIG--DLPRPR--SKGEYFFVIV 309 (679)
Q Consensus 238 ~~l~~~H~~aCl~~~i~~~~~~----~~~~Wi~~~~~~~~~~~~Y~~slywa~~tlttvG--di~~p~--t~~e~i~~i~ 309 (679)
..++..-++|++||+++...+. ++.+|.... .....+..++|||+.|+||+| |+ .|. +...++++++
T Consensus 52 ~y~~swl~Fa~ly~~ia~~~Gdl~~~~~~~~~~Cv----~~~~sf~~af~fSv~T~TTvGYGd~-~p~~~~~~g~~l~~~ 126 (340)
T 3sya_A 52 VYTVTWLFFGMIWWLIAYIRGDMDHIEDPSWTPCV----TNLNGFVSAFLFSIETETTIGYGYR-VITDKCPEGIILLLI 126 (340)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTTTCSSCSSCCCSB----SCCCSTTHHHHHHHHHHSCCCCSSS-CBCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhcccccccccccccchh----ccccCHHHHHhhhheeeeeecCCCc-cCcCcCHHHHHHHHH
Confidence 3444445689999988743221 122332211 123568899999999999998 88 575 6889999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy1512 310 QLLFGLLLFATVLGHVANIVTSV 332 (679)
Q Consensus 310 ~~i~G~~~~a~~ig~i~~ii~~~ 332 (679)
.+++|+++.|+++|.+.+-+...
T Consensus 127 ~~l~G~~l~a~~~giv~ak~srp 149 (340)
T 3sya_A 127 QSVLGSIVNAFMVGCMFVKISQP 149 (340)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCG
T ss_pred HHHHHHHHHHHHHHHHHHHHhHH
Confidence 99999999999999887776553
No 96
>2oz6_A Virulence factor regulator; winged helix, helix-turn-helix, transcription factor, CAMP-B proteins, CAMP receptor protein; HET: CMP; 2.80A {Pseudomonas aeruginosa} SCOP: a.4.5.4 b.82.3.2
Probab=98.06 E-value=2.4e-06 Score=82.51 Aligned_cols=65 Identities=22% Similarity=0.480 Sum_probs=52.7
Q ss_pred CCCceecCCCCceEEEEEeeEEEEEe--cC-CceEeEEcCCCCeeeeeccccCC------ceEEEEeeeeeeee
Q psy1512 602 KRTPLEKGEVGKEMYIVNRGRLQVVA--DN-GKTVLATLRAGSYFGEISILNMG------TAGTNLIQECEDHI 666 (679)
Q Consensus 602 ~~~ii~~Ge~g~~~yiI~~G~v~v~~--~~-~~~~i~~L~~G~~FGE~all~~~------~~t~~a~~~~~~~~ 666 (679)
+..++++|+.++.+|+|.+|.|++.. .+ .+..+..+++|++|||.+++.+. .+++.|.++|+-..
T Consensus 21 g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~G~~~~~~~~~~g~~~G~~~~~~~~~~~~~~~~~~~A~~~~~v~~ 94 (207)
T 2oz6_A 21 KSTIIYAGDRCETLFFIIKGSVTILIEDDDGREMIIGYLNSGDFFGELGLFEKEGSEQERSAWVRAKVECEVAE 94 (207)
T ss_dssp TCEEECTTSBCCEEEEEEESEEEEEEECTTSCEEEEEEEETTCEESCTTTCC-----CBCCSEEEESSCEEEEE
T ss_pred CCEEEcCCCCCCeEEEEEeCEEEEEEECCCCCEEEEEEcCCCCCcccHHHhcCCCCCCCcceEEEECCcEEEEE
Confidence 33889999999999999999999985 22 44578999999999999998864 57888887776554
No 97
>3ryp_A Catabolite gene activator; CAMP receptor protein (CRP), allostery, DNA binding cyclic A transcription regulator; HET: CMP; 1.60A {Escherichia coli} PDB: 2cgp_A* 3hif_A 1g6n_A* 3ryr_A* 1i5z_A* 1j59_A* 1lb2_A* 1run_A* 1zrc_A* 1zrd_A* 1zre_A* 1zrf_A* 2gzw_A* 2wc2_A 3iyd_G* 3n4m_A* 3qop_A* 3rdi_A* 3rou_A* 3rpq_A* ...
Probab=98.05 E-value=2.3e-06 Score=82.74 Aligned_cols=65 Identities=25% Similarity=0.513 Sum_probs=54.7
Q ss_pred CCCceecCCCCceEEEEEeeEEEEEe--cC-CceEeEEcCCCCeeeeeccccCC---ceEEEEeeeeeeee
Q psy1512 602 KRTPLEKGEVGKEMYIVNRGRLQVVA--DN-GKTVLATLRAGSYFGEISILNMG---TAGTNLIQECEDHI 666 (679)
Q Consensus 602 ~~~ii~~Ge~g~~~yiI~~G~v~v~~--~~-~~~~i~~L~~G~~FGE~all~~~---~~t~~a~~~~~~~~ 666 (679)
+..++++|+.++.+|+|.+|.|++.. .+ .+..+..+++|++|||.+++.+. .+++.|.++|+-..
T Consensus 27 g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~g~~~~~~~~~~g~~~G~~~~~~~~~~~~~~~~a~~~~~v~~ 97 (210)
T 3ryp_A 27 KSTLIHQGEKAETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGELGLFEEGQERSAWVRAKTACEVAE 97 (210)
T ss_dssp TCEEECTTSBCCEEEEEEESEEEEEEECTTCCEEEEEEEETTCEESCTTTTSTTCBCSSEEEESSCEEEEE
T ss_pred CCEEECCCCCCCeEEEEEeCEEEEEEECCCCCEEEEEEcCCCCEeeeHHHhcCCCCceEEEEECCcEEEEE
Confidence 33889999999999999999999985 23 34578899999999999999875 78888888776554
No 98
>3kcc_A Catabolite gene activator; helix-turn-helix, CAMP, CAMP-binding, DNA-binding nucleotide-binding, transcription, transcription regulation; HET: CMP; 1.66A {Escherichia coli}
Probab=98.03 E-value=2.8e-06 Score=85.54 Aligned_cols=63 Identities=24% Similarity=0.513 Sum_probs=54.1
Q ss_pred CceecCCCCceEEEEEeeEEEEEe--cC-CceEeEEcCCCCeeeeeccccCC---ceEEEEeeeeeeee
Q psy1512 604 TPLEKGEVGKEMYIVNRGRLQVVA--DN-GKTVLATLRAGSYFGEISILNMG---TAGTNLIQECEDHI 666 (679)
Q Consensus 604 ~ii~~Ge~g~~~yiI~~G~v~v~~--~~-~~~~i~~L~~G~~FGE~all~~~---~~t~~a~~~~~~~~ 666 (679)
.++++|+.++.+|+|.+|.|++.. .+ .+..+..+++|++|||.+++.+. .++++|.++|+-..
T Consensus 79 ~i~~~G~~~~~~y~I~~G~v~~~~~~~~G~e~~~~~~~~G~~~Ge~~~~~~~~~~~~~~~A~~~~~l~~ 147 (260)
T 3kcc_A 79 TLIHQGEKAETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGELGLFEEGQERSAWVRAKTACEVAE 147 (260)
T ss_dssp EEECTTCBCCEEEEEEECEEEEEEECTTCCEEEEEEEETTCEESCTTTTSTTCBCCSEEEESSCEEEEE
T ss_pred EEECCCCcCCeEEEEEeCEEEEEEECCCCCEEEEEEcCCCCEEeehHHhCCCCCCceEEEECCCeEEEE
Confidence 889999999999999999999985 23 34578999999999999999875 78888888877655
No 99
>3la7_A Global nitrogen regulator; activator, DNA-binding, transcription, transcription regulation; HET: BOG; 1.90A {Anabaena} PDB: 3la2_A* 3la3_A* 2xko_A* 2xgx_A* 2xhk_A* 2xkp_A*
Probab=98.00 E-value=3.4e-07 Score=91.26 Aligned_cols=117 Identities=14% Similarity=0.012 Sum_probs=80.8
Q ss_pred hhHHHHHHHhcc---ceEeCCCCEEEEeCCeeeeEEEEeeeeEEEEEehhhHHHHHhhChhHHHHHHHHHHHHHhhhccC
Q psy1512 464 AGFLCELVLRLR---PVLFSPGDYICRKGNRRTASVRSVGYSDLFVLSKTDMWDVLKEYPAARVRLESIAVKRLQKYKRT 540 (679)
Q Consensus 464 ~~~l~~L~~~l~---~~~~~pge~I~~~Gd~r~asv~a~~~~~ly~I~~g~~~~vl~~~p~~~~~~~~~~~~~~~~~~~~ 540 (679)
+++++.|+.... .+.|.+|++|+++||+ .+.+|+|.+|.+...... + .|. ...-....
T Consensus 30 ~~~l~~L~~~~~~~~~~~~~~ge~i~~~G~~---------~~~ly~v~~G~v~~~~~~-~--~G~-------~~~l~~~~ 90 (243)
T 3la7_A 30 ANVFRQMATGAFPPVVETFERNKTIFFPGDP---------AERVYFLLKGAVKLSRVY-E--AGE-------EITVALLR 90 (243)
T ss_dssp HHHHHHHCCSSCCCEEEEECTTCEEECTTSB---------CCEEEEEEESCEEEEEEC-T--TCC-------EEEEEEEC
T ss_pred HHHHHHHhhccchheeEEECCCCEEEcCCCC---------CceEEEEEeCEEEEEEEC-C--CCC-------EEEEEEec
Confidence 667778887777 9999999999999998 778999987754321100 0 000 00000111
Q ss_pred cccCCCCCCCCCCCC--cccccccccccceeecccchhHHHhhcChhHhhhhHHHHHHHhh
Q psy1512 541 PLEKGISPSPFPGNR--RTASVRSVGYSDLFVLSKTDMWDVLKEYPAARVRLESIAVKRLQ 599 (679)
Q Consensus 541 ~~~~g~~~~~~~~~~--r~atv~A~~~~~l~~L~r~~f~~il~~~P~~~~~l~~~~~~rl~ 599 (679)
.+++.+..+++.+.| +.++++|.++|+++.|++++|.++++++|++...+...+.+++.
T Consensus 91 ~g~~~G~~~~~~~~~~~~~~~~~A~~~~~v~~i~~~~~~~l~~~~p~~~~~l~~~l~~~l~ 151 (243)
T 3la7_A 91 ENSVFGVLSLLTGNKSDRFYHAVAFTPVELLSAPIEQVEQALKENPELSMLMLRGLSSRIL 151 (243)
T ss_dssp TTCEESCHHHHSSCCSBCCEEEEESSSEEEEEEEHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred CCCEEcchHHhCCCCCcceEEEEEccceEEEEEcHHHHHHHHHHCHHHHHHHHHHHHHHHH
Confidence 222222334455655 56899999999999999999999999999999888776655443
No 100
>3dkw_A DNR protein; CRP-FNR, HTH, beta barrel, dimerization helix, homodimer, transcription regulator; 3.60A {Pseudomonas aeruginosa}
Probab=97.97 E-value=2.6e-06 Score=83.54 Aligned_cols=93 Identities=11% Similarity=0.088 Sum_probs=66.6
Q ss_pred chhHHHhhcChhHhhhhHHHH---HH--HhhhcCC--CceecCCCCceEEEEEeeEEEEEec---CCceEeEEcCCCCee
Q psy1512 574 TDMWDVLKEYPAARVRLESIA---VK--RLQKYKR--TPLEKGEVGKEMYIVNRGRLQVVAD---NGKTVLATLRAGSYF 643 (679)
Q Consensus 574 ~~f~~il~~~P~~~~~l~~~~---~~--rl~~~~~--~ii~~Ge~g~~~yiI~~G~v~v~~~---~~~~~i~~L~~G~~F 643 (679)
.+..+++++.|.+...-.+.. .. +.+.+.+ .++++|+.++.+|+|.+|.|++... +.+..+..+++|++|
T Consensus 5 ~~~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~G~~~~~~~~~~g~~~ 84 (227)
T 3dkw_A 5 RVHQQLLQSHHLFEPLSPVQLQELLASSDLVNLDKGAYVFRQGEPAHAFYYLISGCVKIYRLTPEGQEKILEVTNERNTF 84 (227)
T ss_dssp SSSHHHHTTSTTTSSSCHHHHHHHHTSCEEEECCTTEEEECTTSBCCEEEEEEESCEECCBCCGGGCCBCCCEECTTEEE
T ss_pred hhHHHHHhcChhhcCCCHHHHHHHHhhCEEEEECCCCEEEcCCCccceEEEEEeCEEEEEEECCCCCEEEEEEcCCCCEe
Confidence 345566777666554333222 22 2222333 8899999999999999999999852 234578899999999
Q ss_pred eeeccccCC---ceEEEEeeeeeeee
Q psy1512 644 GEISILNMG---TAGTNLIQECEDHI 666 (679)
Q Consensus 644 GE~all~~~---~~t~~a~~~~~~~~ 666 (679)
||.+++.+. .+++.|.++|+-..
T Consensus 85 G~~~~~~~~~~~~~~~~a~~~~~v~~ 110 (227)
T 3dkw_A 85 AEAMMFMDTPNYVATAQAVVPSQLFR 110 (227)
T ss_dssp SCTTTTTTCSBCSSCEEESSCCEEEE
T ss_pred eeHHhcCCCCCCceEEEEcCcEEEEE
Confidence 999998876 67888888776555
No 101
>3dv8_A Transcriptional regulator, CRP/FNR family; cyclic nucleotide-binding domain, structural genomics, joint for structural genomics; 2.55A {Eubacterium rectale atcc 33656}
Probab=97.96 E-value=8.2e-06 Score=79.46 Aligned_cols=63 Identities=13% Similarity=0.085 Sum_probs=54.4
Q ss_pred CceecCCCCceEEEEEeeEEEEEe--cC-CceEeEEcCCCCe--eeeeccccCC--ceEEEEeeeeeeee
Q psy1512 604 TPLEKGEVGKEMYIVNRGRLQVVA--DN-GKTVLATLRAGSY--FGEISILNMG--TAGTNLIQECEDHI 666 (679)
Q Consensus 604 ~ii~~Ge~g~~~yiI~~G~v~v~~--~~-~~~~i~~L~~G~~--FGE~all~~~--~~t~~a~~~~~~~~ 666 (679)
.++++|+.++.+|+|.+|.|++.. .+ .+..+..+++|++ |||.+++.+. .+++.|.++|+-..
T Consensus 36 ~i~~~G~~~~~~y~i~~G~v~~~~~~~~G~~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~a~~~~~~~~ 105 (220)
T 3dv8_A 36 IIHNGNMDCTGLLLVKSGQLRTYILSDEGREITLYRLFDMDMCLLSASCIMRSIQFEVTIEAEKDTDLWI 105 (220)
T ss_dssp EEEEGGGCCCEEEEEEESCEEEEEECTTSCEEEEEEECTTCEESGGGGGGCTTCCCCCEEEESSCEEEEE
T ss_pred EEECCCCCcceEEEEEeceEEEEEECCCCCEEEEEecCCCCeeehhHHHHhCCCCCceEEEEeeeeEEEE
Confidence 889999999999999999999985 33 3456889999999 7999999887 88899988877655
No 102
>2bgc_A PRFA; bacterial infection, human pathogen, transcriptional regulat transcription; HET: PR3; 2.3A {Listeria monocytogenes} SCOP: a.4.5.4 b.82.3.3 PDB: 2beo_A* 1omi_A
Probab=97.95 E-value=8.4e-07 Score=88.07 Aligned_cols=121 Identities=8% Similarity=-0.042 Sum_probs=80.8
Q ss_pred ccCChhHHHHHHH--hccceEeCCCCEEEEeCCeeeeEEEEeeeeEEEEEehhhHHHHHhhChhHHHHHHHHHHHHHhhh
Q psy1512 460 QNTEAGFLCELVL--RLRPVLFSPGDYICRKGNRRTASVRSVGYSDLFVLSKTDMWDVLKEYPAARVRLESIAVKRLQKY 537 (679)
Q Consensus 460 ~~~~~~~l~~L~~--~l~~~~~~pge~I~~~Gd~r~asv~a~~~~~ly~I~~g~~~~vl~~~p~~~~~~~~~~~~~~~~~ 537 (679)
++++++.+..+.. .++.+.|.+|++|+++||+ .+.+|+|.+|.+...... + .|. +... .
T Consensus 2 ~~l~~~~l~~ll~~~~~~~~~~~~ge~i~~~G~~---------~~~~y~I~~G~v~~~~~~-~--~G~------e~~~-~ 62 (238)
T 2bgc_A 2 SNAQAEEFKKYLETNGIKPKQFHKKELIFNQWDP---------QEYCIFLYDGITKLTSIS-E--NGT------IMNL-Q 62 (238)
T ss_dssp --CHHHHHHHHHHHTTCCCEEEETTCEEECTTCC---------CCEEEEEEESEEEEEEEC-T--TSC------EEEE-E
T ss_pred CCCCHHHHHHHHHhCCceEEEECCCCEEEeCCCC---------CceEEEEEecEEEEEEEC-C--CCC------EEEE-E
Confidence 3578888888885 5899999999999999998 678999987754321100 0 000 0000 0
Q ss_pred ccCcccCCCCCCCCCCCCc--ccccccc-cccceeecccchhHHHhhcChhHhhhhHHHHHHHhhh
Q psy1512 538 KRTPLEKGISPSPFPGNRR--TASVRSV-GYSDLFVLSKTDMWDVLKEYPAARVRLESIAVKRLQK 600 (679)
Q Consensus 538 ~~~~~~~g~~~~~~~~~~r--~atv~A~-~~~~l~~L~r~~f~~il~~~P~~~~~l~~~~~~rl~~ 600 (679)
.. .++..+..+++.+.++ ..++.|. ++|+++.|++++|.+++.++|++...+...+.+++..
T Consensus 63 ~~-~G~~~Ge~~~~~~~~~~~~~~~~a~~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~l~~~l~~ 127 (238)
T 2bgc_A 63 YY-KGAFVIMSGFIDTETSVGYYNLEVISEQATAYVIKINELKELLSKNLTHFFYVFQTLQKQVSY 127 (238)
T ss_dssp EE-ESSEEEESBCTTTCCBSCCCEEEECSSEEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHHHHHH
T ss_pred Ec-CCCEecchhhhcCCCcCcceeEEEEEcceEEEEEeHHHHHHHHHHCHHHHHHHHHHHHHHHHH
Confidence 11 2333233455666643 4555555 6999999999999999999999988887776664433
No 103
>1o5l_A Transcriptional regulator, CRP family; TM1171, structural GE JCSG, PSI, protein structure initiative, joint center for S genomics; 2.30A {Thermotoga maritima} SCOP: b.82.3.2
Probab=97.93 E-value=3.8e-06 Score=81.74 Aligned_cols=66 Identities=8% Similarity=0.022 Sum_probs=55.0
Q ss_pred cCCCceecCCCCceEEEEEeeEEEEEe--cC-CceEeEEcCCCCeeeeeccccCC---ceEEEEeeeeeeee
Q psy1512 601 YKRTPLEKGEVGKEMYIVNRGRLQVVA--DN-GKTVLATLRAGSYFGEISILNMG---TAGTNLIQECEDHI 666 (679)
Q Consensus 601 ~~~~ii~~Ge~g~~~yiI~~G~v~v~~--~~-~~~~i~~L~~G~~FGE~all~~~---~~t~~a~~~~~~~~ 666 (679)
.+..++++|+.++.+|+|.+|.|++.. .+ .+..+..+++|++|||.+++.+. .+++.|.++|+-..
T Consensus 29 ~g~~i~~~G~~~~~~y~v~~G~v~~~~~~~~G~~~~~~~~~~G~~~G~~~~~~~~~~~~~~~~A~~~~~v~~ 100 (213)
T 1o5l_A 29 KGEIVKHQDDPIEDVLILLEGTLKTEHVSENGKTLEIDEIKPVQIIASGFIFSSEPRFPVNVVAGENSKILS 100 (213)
T ss_dssp TTCEEECTTCBCCEEEEEEESCEEEEEECTTSCEEEEEEECSSEESSGGGTTSSSCBCSSEEEESSSEEEEE
T ss_pred CCCEEEcCCCccceEEEEEeeEEEEEEECCCCCEEEEEEecCCCEeeeHHHhcCCCCceEEEEEccceEEEE
Confidence 344889999999999999999999985 23 34568899999999999998764 78899988877655
No 104
>3ukm_A Potassium channel subfamily K member 1; membrane protein, eukaryotic, two-pore DO potassium channel, K2P channel, membrane; HET: UND; 3.40A {Homo sapiens}
Probab=97.91 E-value=2.9e-05 Score=77.90 Aligned_cols=56 Identities=29% Similarity=0.510 Sum_probs=49.8
Q ss_pred hhHHHHHHHHHHhhccc--CCcCCCCch-------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1512 277 QYLQSYYWCTLALTTIG--DLPRPRSKG-------EYFFVIVQLLFGLLLFATVLGHVANIVTSVS 333 (679)
Q Consensus 277 ~Y~~slywa~~tlttvG--di~~p~t~~-------e~i~~i~~~i~G~~~~a~~ig~i~~ii~~~~ 333 (679)
.|++|+||+++|+||+| |+ .|.+.. .++++++.+++|+.+++++++.+++++....
T Consensus 201 s~~da~y~~~iTltTvGyGD~-~p~t~~~~~~~~l~r~~~~~~il~Gl~~~~~~~~~i~~~~~~~~ 265 (280)
T 3ukm_A 201 NFLESFYFCFISLSTIGLGDY-VPGEGYNQKFRELYKIGITCYLLLGLIAMLVVLETFCELHELKK 265 (280)
T ss_dssp CHHHHHHHHHHHHTTCCCCSC-CSSCSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTSHHHHH
T ss_pred chhhhhhheeeeeecccCCCC-CCCCCcccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 48899999999999998 99 588885 4999999999999999999999998776544
No 105
>3spc_A Inward-rectifier K+ channel KIR2.2; PIP, membrane protein, lipid, receptor, metal transport; HET: P8P; 2.45A {Gallus gallus} PDB: 3jyc_A* 3spi_A* 3sph_A* 3spj_A 3spg_A*
Probab=97.83 E-value=5.1e-05 Score=78.33 Aligned_cols=90 Identities=19% Similarity=0.263 Sum_probs=64.7
Q ss_pred HHHHHHHHHHHHHHHHHhcCCC-----CCCCcccCCCCCchhhhhhHHHHHHHHHHhhccc--CCc-CCCCchhHHHHHH
Q psy1512 238 YLLVIFHWNGCLYHIIYKNDGF-----GSRNWVYGDSDTTDVVKQYLQSYYWCTLALTTIG--DLP-RPRSKGEYFFVIV 309 (679)
Q Consensus 238 ~~l~~~H~~aCl~~~i~~~~~~-----~~~~Wi~~~~~~~~~~~~Y~~slywa~~tlttvG--di~-~p~t~~e~i~~i~ 309 (679)
..++..-++|.+|++++..++. .+++|... -.....+..++||++.|+||+| |+. +|.+...++++.+
T Consensus 54 ~y~~swl~Fally~~ia~~~gdl~~~~~~~~~~~C----v~~~~sf~~af~fSv~T~TTvGYGd~~p~~~~~~~~~l~~~ 129 (343)
T 3spc_A 54 AFLVSWLLFGLIFWLIALIHGDLENPGGDDTFKPC----VLQVNGFVAAFLFSIETQTTIGYGFRCVTEECPLAVFMVVV 129 (343)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTGGGCTTCCSSCCCS----EETCCSHHHHHHHHHHHHSCCCCSSSEECSSCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcCCcccccccccccccc----ccccCCHHHHhheeeeeeEeecCCCccCCCCCHHHHHHHHH
Confidence 3444455678889887654321 12234221 1123578999999999999998 772 3568999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q psy1512 310 QLLFGLLLFATVLGHVANIVTS 331 (679)
Q Consensus 310 ~~i~G~~~~a~~ig~i~~ii~~ 331 (679)
.+++|+++.|+++|.+.+-+..
T Consensus 130 ~~l~G~~l~a~~~giv~ak~sr 151 (343)
T 3spc_A 130 QSIVGCIIDSFMIGAIMAKMAR 151 (343)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHhh
Confidence 9999999999999988776644
No 106
>3ukm_A Potassium channel subfamily K member 1; membrane protein, eukaryotic, two-pore DO potassium channel, K2P channel, membrane; HET: UND; 3.40A {Homo sapiens}
Probab=97.82 E-value=2.7e-05 Score=78.12 Aligned_cols=54 Identities=22% Similarity=0.385 Sum_probs=49.9
Q ss_pred hhHHHHHHHHHHhhccc--CCcCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1512 277 QYLQSYYWCTLALTTIG--DLPRPRSKGEYFFVIVQLLFGLLLFATVLGHVANIVTS 331 (679)
Q Consensus 277 ~Y~~slywa~~tlttvG--di~~p~t~~e~i~~i~~~i~G~~~~a~~ig~i~~ii~~ 331 (679)
.|.+|+||+++|+||+| |+ +|.|..+++++++.+++|+.+++++++.++..+..
T Consensus 93 ~~~~a~yf~~~t~tTvGyGd~-~P~T~~Gk~f~~~~~l~Gi~~~~~~~~~~~~~l~~ 148 (280)
T 3ukm_A 93 DFTSALFFASTVLSTTGYGHT-VPLSDGGKAFCIIYSVIGIPFTLLFLTAVVQRITV 148 (280)
T ss_dssp SHHHHHHHHHHHHTTCCCCSS-CCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChhcchhheeeeeeccccCCc-CCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 79999999999999998 88 79999999999999999999999999998866544
No 107
>3la7_A Global nitrogen regulator; activator, DNA-binding, transcription, transcription regulation; HET: BOG; 1.90A {Anabaena} PDB: 3la2_A* 3la3_A* 2xko_A* 2xgx_A* 2xhk_A* 2xkp_A*
Probab=97.74 E-value=3.4e-05 Score=76.64 Aligned_cols=64 Identities=20% Similarity=0.300 Sum_probs=53.6
Q ss_pred CCceecCCCCceEEEEEeeEEEEEe--cC-CceEeEEcCCCCeeeeeccccCC--c--eEEEEeeeeeeee
Q psy1512 603 RTPLEKGEVGKEMYIVNRGRLQVVA--DN-GKTVLATLRAGSYFGEISILNMG--T--AGTNLIQECEDHI 666 (679)
Q Consensus 603 ~~ii~~Ge~g~~~yiI~~G~v~v~~--~~-~~~~i~~L~~G~~FGE~all~~~--~--~t~~a~~~~~~~~ 666 (679)
..++++|+.++.+|+|.+|.|++.. .+ .+..+..+++|++|||.+++.+. . .++.|.++|+-..
T Consensus 52 e~i~~~G~~~~~ly~v~~G~v~~~~~~~~G~~~~l~~~~~g~~~G~~~~~~~~~~~~~~~~~A~~~~~v~~ 122 (243)
T 3la7_A 52 KTIFFPGDPAERVYFLLKGAVKLSRVYEAGEEITVALLRENSVFGVLSLLTGNKSDRFYHAVAFTPVELLS 122 (243)
T ss_dssp CEEECTTSBCCEEEEEEESCEEEEEECTTCCEEEEEEECTTCEESCHHHHSSCCSBCCEEEEESSSEEEEE
T ss_pred CEEEcCCCCCceEEEEEeCEEEEEEECCCCCEEEEEEecCCCEEcchHHhCCCCCcceEEEEEccceEEEE
Confidence 3889999999999999999999985 23 34578899999999999999876 2 6888887776554
No 108
>2zcw_A TTHA1359, transcriptional regulator, FNR/CRP family; stationary phase, DNA-binding, transcription regulation; 1.50A {Thermus thermophilus}
Probab=97.73 E-value=2.9e-05 Score=74.64 Aligned_cols=63 Identities=22% Similarity=0.258 Sum_probs=52.5
Q ss_pred CCceecCCCC--ceEEEEEeeEEEEEe--cC-CceEeEEcCCCCeeeeeccccCC--ceEEEEeeeeeeee
Q psy1512 603 RTPLEKGEVG--KEMYIVNRGRLQVVA--DN-GKTVLATLRAGSYFGEISILNMG--TAGTNLIQECEDHI 666 (679)
Q Consensus 603 ~~ii~~Ge~g--~~~yiI~~G~v~v~~--~~-~~~~i~~L~~G~~FGE~all~~~--~~t~~a~~~~~~~~ 666 (679)
..++++|+.+ +.+|+|.+|.|.+.. .+ .+..+..+++|++||| +++.+. ..++.|.++|+-..
T Consensus 14 ~~i~~~g~~~~~~~~y~v~~G~v~~~~~~~~G~~~~~~~~~~g~~~G~-~~l~~~~~~~~~~A~~~~~v~~ 83 (202)
T 2zcw_A 14 DVILYPGVPGPRDRAYRVLEGLVRLEAVDEEGNALTLRLVRPGGFFGE-EALFGQERIYFAEAATDVRLEP 83 (202)
T ss_dssp CEEECSBSCCTTCCCEEEEESCEEEEEECTTSCEEEEEEECTTCEECT-HHHHTCCBCSEEEESSCEEEEE
T ss_pred CEEECCCCCCCCCeEEEEEeCEEEEEEECCCCcEEEEEEecCCCEeee-hhcCCCCcceEEEEcccEEEEE
Confidence 3789999999 999999999999985 23 3456889999999999 888766 88888888776543
No 109
>3e6c_C CPRK, cyclic nucleotide-binding protein; CPRK, halorespiration; HET: DNA 3C4; 1.80A {Desulfitobacterium hafniense} SCOP: a.4.5.4 b.82.3.2 PDB: 3e6b_A* 3e5u_C* 3e6d_A 3e5x_A* 3e5q_A 2h6b_A* 2h6c_A
Probab=97.73 E-value=1.7e-05 Score=79.13 Aligned_cols=65 Identities=12% Similarity=0.195 Sum_probs=52.2
Q ss_pred hcCCCceecCCCCceEEEEEeeEEEEEe--cC-CceEeEEcCCCCeeeeeccccCC-ceEEEEeeeeeeee
Q psy1512 600 KYKRTPLEKGEVGKEMYIVNRGRLQVVA--DN-GKTVLATLRAGSYFGEISILNMG-TAGTNLIQECEDHI 666 (679)
Q Consensus 600 ~~~~~ii~~Ge~g~~~yiI~~G~v~v~~--~~-~~~~i~~L~~G~~FGE~all~~~-~~t~~a~~~~~~~~ 666 (679)
+.+..++++|+.++.+|+|.+|.|++.. .+ .+..+..+++|++||| ++.+. .+++.|.++|+-..
T Consensus 38 ~~g~~i~~~G~~~~~~y~i~~G~v~~~~~~~~G~~~~~~~~~~G~~~G~--~l~~~~~~~~~A~~~~~v~~ 106 (250)
T 3e6c_C 38 AKGSAVIMPGEEITSMIFLVEGKIKLDIIFEDGSEKLLYYAGGNSLIGK--LYPTGNNIYATAMEPTRTCW 106 (250)
T ss_dssp CTTCEEECTTCCCCSEEEEEESCEEEEEECTTSCEEEEEEECTTCEECC--CSCCSCCEEEEESSSEEEEE
T ss_pred CCCCEEECCCCCCCeEEEEEeeEEEEEEECCCCCEEEEEEecCCCEEee--ecCCCCceEEEEcccEEEEE
Confidence 3344889999999999999999999986 23 3456889999999999 66666 77788887766554
No 110
>3beh_A MLL3241 protein; transmembrane protein, membrane protein; HET: LDA; 3.10A {Mesorhizobium loti} PDB: 2zd9_A*
Probab=97.70 E-value=5.1e-06 Score=87.77 Aligned_cols=66 Identities=23% Similarity=0.335 Sum_probs=0.0
Q ss_pred HhhhcCCCceecCCCCceEEEEEeeEEEEEecCCceEeEEcCCCCeeeeeccccCC--ceEEEEeeeeeeee
Q psy1512 597 RLQKYKRTPLEKGEVGKEMYIVNRGRLQVVADNGKTVLATLRAGSYFGEISILNMG--TAGTNLIQECEDHI 666 (679)
Q Consensus 597 rl~~~~~~ii~~Ge~g~~~yiI~~G~v~v~~~~~~~~i~~L~~G~~FGE~all~~~--~~t~~a~~~~~~~~ 666 (679)
+.-+.+..+++|||.++++|+|.+|+|++...+ ...+++||+|||.+++.+. .++++|.++|+-..
T Consensus 254 ~~~~~ge~I~~~G~~~~~ly~I~~G~v~v~~~~----~~~l~~G~~fGe~~~l~~~~~~~~~~A~~~~~l~~ 321 (355)
T 3beh_A 254 RTVPAGAVICRIGEPGDRMFFVVEGSVSVATPN----PVELGPGAFFGEMALISGEPRSATVSAATTVSLLS 321 (355)
T ss_dssp ------------------------------------------------------------------------
T ss_pred EEECCCCEEEeCCCcCceEEEEEeeEEEEEECC----eeEECCCCEEeehHHhCCCCcceEEEECccEEEEE
Confidence 334444489999999999999999999998754 3589999999999999987 78888887766443
No 111
>2bgc_A PRFA; bacterial infection, human pathogen, transcriptional regulat transcription; HET: PR3; 2.3A {Listeria monocytogenes} SCOP: a.4.5.4 b.82.3.3 PDB: 2beo_A* 1omi_A
Probab=97.68 E-value=4.7e-05 Score=75.28 Aligned_cols=60 Identities=10% Similarity=0.139 Sum_probs=49.3
Q ss_pred CceecCCCCceEEEEEeeEEEEEe--cCC-ceEeEEcCCCCeeeeeccccCC----ceEEEEee-eeee
Q psy1512 604 TPLEKGEVGKEMYIVNRGRLQVVA--DNG-KTVLATLRAGSYFGEISILNMG----TAGTNLIQ-ECED 664 (679)
Q Consensus 604 ~ii~~Ge~g~~~yiI~~G~v~v~~--~~~-~~~i~~L~~G~~FGE~all~~~----~~t~~a~~-~~~~ 664 (679)
.++++|+.++.+|+|.+|.|++.. .+| +..+..+ +|++|||.+++.+. ..++.|.+ +|+-
T Consensus 28 ~i~~~G~~~~~~y~I~~G~v~~~~~~~~G~e~~~~~~-~G~~~Ge~~~~~~~~~~~~~~~~a~~~~~~v 95 (238)
T 2bgc_A 28 LIFNQWDPQEYCIFLYDGITKLTSISENGTIMNLQYY-KGAFVIMSGFIDTETSVGYYNLEVISEQATA 95 (238)
T ss_dssp EEECTTCCCCEEEEEEESEEEEEEECTTSCEEEEEEE-ESSEEEESBCTTTCCBSCCCEEEECSSEEEE
T ss_pred EEEeCCCCCceEEEEEecEEEEEEECCCCCEEEEEEc-CCCEecchhhhcCCCcCcceeEEEEEcceEE
Confidence 889999999999999999999986 333 4557778 99999999999987 47888885 5443
No 112
>2fmy_A COOA, carbon monoxide oxidation system transcription RE COOA-1; DNA transcription regulator, DNA binding protein; HET: HEM; 2.20A {Carboxydothermus hydrogenoformans} PDB: 2hkx_A*
Probab=97.56 E-value=4.3e-05 Score=74.40 Aligned_cols=59 Identities=19% Similarity=0.200 Sum_probs=49.6
Q ss_pred CCceecCCCCceEEEEEeeEEEEEe-c-CCceEeEEcCCCCeeeeeccccCCceEEEEeeeeeeee
Q psy1512 603 RTPLEKGEVGKEMYIVNRGRLQVVA-D-NGKTVLATLRAGSYFGEISILNMGTAGTNLIQECEDHI 666 (679)
Q Consensus 603 ~~ii~~Ge~g~~~yiI~~G~v~v~~-~-~~~~~i~~L~~G~~FGE~all~~~~~t~~a~~~~~~~~ 666 (679)
..++++|+.++.+|+|.+|.|++.. . +.+..+..+++|++||| ...+++.|.++|+-..
T Consensus 36 ~~i~~~g~~~~~~y~i~~G~v~~~~~~~G~~~~~~~~~~G~~~G~-----~~~~~~~A~~~~~v~~ 96 (220)
T 2fmy_A 36 AILYTPNTERNLVFLVKSGRVRVYLAYEDKEFTLAILEAGDIFCT-----HTRAFIQAMEDTTILY 96 (220)
T ss_dssp CEEECTTCSSCEEEEEEESEEEEEEECSSCEEEEEEEETTCEEES-----CSSSEEEESSSEEEEE
T ss_pred CEEECCCCCCCeEEEEEecEEEEEECCCCCEEEEEEcCCCCEeCC-----ccceEEEEcCcEEEEE
Confidence 3889999999999999999999953 2 34457899999999999 4589999998877665
No 113
>3b02_A Transcriptional regulator, CRP family; structural genomics, riken structural genomics/proteomics in RSGI; 1.92A {Thermus thermophilus} PDB: 2zdb_A
Probab=97.53 E-value=6e-06 Score=79.08 Aligned_cols=96 Identities=15% Similarity=0.065 Sum_probs=66.2
Q ss_pred eEeCCCCEEEEeCCeeeeEEEEeeeeEEEEEehhhHHHHHhhChhHHHHHHHHHHHHHhhhccCcccCCCCCCCCCCCCc
Q psy1512 477 VLFSPGDYICRKGNRRTASVRSVGYSDLFVLSKTDMWDVLKEYPAARVRLESIAVKRLQKYKRTPLEKGISPSPFPGNRR 556 (679)
Q Consensus 477 ~~~~pge~I~~~Gd~r~asv~a~~~~~ly~I~~g~~~~vl~~~p~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~r 556 (679)
+.|.+|++|+++||+ .+.+|+|.+|.+...... + .|. ...-.....++..+. +++.+.|+
T Consensus 2 ~~~~~g~~i~~~g~~---------~~~~y~i~~G~v~~~~~~-~--~g~-------~~~~~~~~~G~~~Ge-~~~~~~~~ 61 (195)
T 3b02_A 2 KRFARKETIYLRGEE---------ARTLYRLEEGLVRVVELL-P--DGR-------LITLRHVLPGDYFGE-EALEGKAY 61 (195)
T ss_dssp EEECTTCEEECTTSB---------CCCEEEEEESCEEEEEEC-T--TSC-------EEEEEEECTTCEECG-GGGTCSBC
T ss_pred eEcCCCCEEECCCCC---------CCeEEEEEeCEEEEEEEC-C--CCC-------EEEEEEecCCCEech-hhhCCCCc
Confidence 578999999999998 778999988855321110 0 000 000011223343344 67788899
Q ss_pred ccccccccccceeecccchhHHHhhcChhHhhhhHHHHHHHh
Q psy1512 557 TASVRSVGYSDLFVLSKTDMWDVLKEYPAARVRLESIAVKRL 598 (679)
Q Consensus 557 ~atv~A~~~~~l~~L~r~~f~~il~~~P~~~~~l~~~~~~rl 598 (679)
.++++|.++|+++.|++++|. |++...+...+.+++
T Consensus 62 ~~~~~A~~~~~v~~i~~~~~~------p~~~~~~~~~l~~~l 97 (195)
T 3b02_A 62 RYTAEAMTEAVVQGLEPRAMD------HEALHRVARNLARQM 97 (195)
T ss_dssp SSEEEESSSEEEEEECGGGCC------HHHHHHHHHHHHHHH
T ss_pred eeEEEECCcEEEEEEcHHHcC------HHHHHHHHHHHHHHH
Confidence 999999999999999999998 888877776655543
No 114
>1lnq_A MTHK channels, potassium channel related protein; rossman fold, helix bundle, membrane protein; 3.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.2.1.9 d.286.1.1 f.14.1.1 PDB: 3rbz_A
Probab=97.46 E-value=1.1e-05 Score=84.39 Aligned_cols=57 Identities=19% Similarity=0.504 Sum_probs=49.0
Q ss_pred hhHHHHHHHHHHhhccc--CCcCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1512 277 QYLQSYYWCTLALTTIG--DLPRPRSKGEYFFVIVQLLFGLLLFATVLGHVANIVTSVSA 334 (679)
Q Consensus 277 ~Y~~slywa~~tlttvG--di~~p~t~~e~i~~i~~~i~G~~~~a~~ig~i~~ii~~~~~ 334 (679)
.|..|+||+++|+||+| |+ .|.|..+++++++++++|+++++++++.+.+.+.+...
T Consensus 45 ~~~~a~y~~~~t~tTvGyGd~-~p~t~~~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 103 (336)
T 1lnq_A 45 SWTVSLYWTFVTIATVGYGDY-SPSTPLGMYFTVTLIVLGIGTFAVAVERLLEFLINREQ 103 (336)
T ss_dssp CSSTTHHHHHHHHTTCCCSSC-CCCCSSHHHHHTHHHHTTSTTTTTHHHHHTTTC-----
T ss_pred CHHHHHHHHHHHhhcccCCCC-CCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57789999999999998 88 69999999999999999999999999999988876443
No 115
>1ft9_A Carbon monoxide oxidation system transcription regulator; heme sensor, catabolite gene activator protein; HET: HEM; 2.60A {Rhodospirillum rubrum} SCOP: a.4.5.4 b.82.3.1
Probab=97.23 E-value=0.00013 Score=71.20 Aligned_cols=59 Identities=17% Similarity=0.162 Sum_probs=48.7
Q ss_pred CCceecCCCCceEEEEEeeEEEEEe-cC-CceEeEEcCCCCeeeeeccccCCceEEEEeeeeeeee
Q psy1512 603 RTPLEKGEVGKEMYIVNRGRLQVVA-DN-GKTVLATLRAGSYFGEISILNMGTAGTNLIQECEDHI 666 (679)
Q Consensus 603 ~~ii~~Ge~g~~~yiI~~G~v~v~~-~~-~~~~i~~L~~G~~FGE~all~~~~~t~~a~~~~~~~~ 666 (679)
..++++|+.++.+|+|.+|.|++.. .+ .+..+..+++|++|| ....+++.|.++|+-..
T Consensus 32 ~~i~~~g~~~~~~y~i~~G~v~~~~~~~G~~~~~~~~~~G~~fG-----~~~~~~~~A~~~~~v~~ 92 (222)
T 1ft9_A 32 SLVCTGEGDENGVFVVVDGRLRVYLVGEEREISLFYLTSGDMFC-----MHSGCLVEATERTEVRF 92 (222)
T ss_dssp CEEECTTCCCCCEEEEEESEEEEEEEETTEEEEEEEEETTCEEE-----SCSSCEEEESSCEEEEE
T ss_pred CEEECCCCCCCeEEEEEecEEEEEECCCCCEEEEEEcCCCCEec-----CCCCEEEEEccceEEEE
Confidence 3889999999999999999999963 23 345689999999999 34489999998877655
No 116
>2zcw_A TTHA1359, transcriptional regulator, FNR/CRP family; stationary phase, DNA-binding, transcription regulation; 1.50A {Thermus thermophilus}
Probab=97.04 E-value=2e-05 Score=75.71 Aligned_cols=99 Identities=14% Similarity=-0.036 Sum_probs=62.8
Q ss_pred HHhccceEeCCCCEEEEeCCeeeeEEEEeee--eEEEEEehhhHHHHHhhChhHHHHHHHHHHHHHhhhccCcccCCCCC
Q psy1512 471 VLRLRPVLFSPGDYICRKGNRRTASVRSVGY--SDLFVLSKTDMWDVLKEYPAARVRLESIAVKRLQKYKRTPLEKGISP 548 (679)
Q Consensus 471 ~~~l~~~~~~pge~I~~~Gd~r~asv~a~~~--~~ly~I~~g~~~~vl~~~p~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 548 (679)
...++.+.|.+|++|+++||+ . +.+|+|.+|.+...... + .|. ...-.....++..+.
T Consensus 2 ~~~~~~~~~~~g~~i~~~g~~---------~~~~~~y~v~~G~v~~~~~~-~--~G~-------~~~~~~~~~g~~~G~- 61 (202)
T 2zcw_A 2 TQVRETVSFKAGDVILYPGVP---------GPRDRAYRVLEGLVRLEAVD-E--EGN-------ALTLRLVRPGGFFGE- 61 (202)
T ss_dssp ----CCEEECTTCEEECSBSC---------CTTCCCEEEEESCEEEEEEC-T--TSC-------EEEEEEECTTCEECT-
T ss_pred CccceEEEECCCCEEECCCCC---------CCCCeEEEEEeCEEEEEEEC-C--CCc-------EEEEEEecCCCEeee-
Confidence 456788999999999999998 6 78899977754221100 0 000 000001122332223
Q ss_pred CCCCCCCcccccccccccceeecccchhHHHhhcChhHhhhhHHHHHH
Q psy1512 549 SPFPGNRRTASVRSVGYSDLFVLSKTDMWDVLKEYPAARVRLESIAVK 596 (679)
Q Consensus 549 ~~~~~~~r~atv~A~~~~~l~~L~r~~f~~il~~~P~~~~~l~~~~~~ 596 (679)
+++.+.|+.++++|.++|+++.| +++|. |++...+...+.+
T Consensus 62 ~~l~~~~~~~~~~A~~~~~v~~i-~~~~~------p~~~~~~~~~l~~ 102 (202)
T 2zcw_A 62 EALFGQERIYFAEAATDVRLEPL-PENPD------PELLKDLAQHLSQ 102 (202)
T ss_dssp HHHHTCCBCSEEEESSCEEEEEC-CSSCC------HHHHHHHHHHHHH
T ss_pred hhcCCCCcceEEEEcccEEEEEE-hHhcC------HHHHHHHHHHHHH
Confidence 45567899999999999999999 99986 8777666665544
No 117
>3cf6_E RAP guanine nucleotide exchange factor (GEF) 4; EPAC, rapgef4, CAMP, SP-camps, GEF, gunanine nucleotide exchange factor, G-protein, GTP-binding, nucleotide-binding; HET: SP1; 2.20A {Mus musculus}
Probab=72.92 E-value=0.054 Score=61.90 Aligned_cols=42 Identities=24% Similarity=0.294 Sum_probs=37.0
Q ss_pred CCCCCCCccccccccc-ccceeecccchhHHHhhcChhHhhhh
Q psy1512 549 SPFPGNRRTASVRSVG-YSDLFVLSKTDMWDVLKEYPAARVRL 590 (679)
Q Consensus 549 ~~~~~~~r~atv~A~~-~~~l~~L~r~~f~~il~~~P~~~~~l 590 (679)
+++.+.++.++++|.+ +|+++.|++++|.++++++|.....+
T Consensus 108 al~~~~~~~~tv~A~edd~~ll~I~~~~f~~ll~~~p~l~~~l 150 (694)
T 3cf6_E 108 ALVNDAPRAASIVLREDNCHFLRVDKEDFNRILRDVEANTVRL 150 (694)
T ss_dssp HHHHTCBCSSEEEECSSSEEEEEEEHHHHHHHTTTTCCCCEEE
T ss_pred HHhCCCCceEEEEEeeCceEEEEEeHHHHHHHHHHCHHHHHHH
Confidence 4456789999999999 59999999999999999999987655
No 118
>3kg2_A Glutamate receptor 2; ION channel, membrane protein, cell membrane, glycoprotein, transport, membrane, postsynaptic cell membrane, editing; HET: ZK1 NAG BMA; 3.60A {Rattus norvegicus}
Probab=70.44 E-value=3.8 Score=47.39 Aligned_cols=54 Identities=22% Similarity=0.330 Sum_probs=45.2
Q ss_pred hhHHHHHHHHHHhhccc-CCcCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1512 277 QYLQSYYWCTLALTTIG-DLPRPRSKGEYFFVIVQLLFGLLLFATVLGHVANIVTS 331 (679)
Q Consensus 277 ~Y~~slywa~~tlttvG-di~~p~t~~e~i~~i~~~i~G~~~~a~~ig~i~~ii~~ 331 (679)
....++||++.+++..| +. .|.+...+++.++++++++++.+.-.+++++.++.
T Consensus 563 ~~~~~~~~~~~~l~~~g~~~-~p~~~~~R~~~~~w~~~~lil~~~Yta~L~s~Lt~ 617 (823)
T 3kg2_A 563 GIFNSLWFSLGAFMQQGADI-SPRSLSGRIVGGVWWFFTLIIISSYTANLAAFLTV 617 (823)
T ss_dssp HHHHHHHHTTTTSCC-------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhcCCCc-CCcchhhhhHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 46679999999998888 66 69999999999999999999999999999999876
No 119
>3es4_A Uncharacterized protein DUF861 with A RMLC-like C; 17741406, protein of unknown function (DUF861) with A RMLC-L fold; HET: MSE; 1.64A {Agrobacterium tumefaciens str}
Probab=52.20 E-value=10 Score=32.16 Aligned_cols=31 Identities=16% Similarity=0.249 Sum_probs=25.0
Q ss_pred CceEEEEEeeEEEEEecCCceEeEEcCCCCeee
Q psy1512 612 GKEMYIVNRGRLQVVADNGKTVLATLRAGSYFG 644 (679)
Q Consensus 612 g~~~yiI~~G~v~v~~~~~~~~i~~L~~G~~FG 644 (679)
.++++.|++|++.++.++++ -.++++||.|-
T Consensus 61 ~~E~~~iLeG~~~lt~ddG~--~~~l~aGD~~~ 91 (116)
T 3es4_A 61 LEETFVVVEGEALYSQADAD--PVKIGPGSIVS 91 (116)
T ss_dssp EEEEEEEEECCEEEEETTCC--CEEECTTEEEE
T ss_pred CcEEEEEEEeEEEEEeCCCe--EEEECCCCEEE
Confidence 34899999999999987664 45899999763
No 120
>2r9r_B Paddle chimera voltage gated potassium channel KV; voltage sensor, voltage dependent, ION CH shaker, membrane protein, eukaryotic; HET: NAP PGW; 2.40A {Rattus norvegicus} PDB: 3lnm_B* 3lut_B* 2a79_B*
Probab=50.42 E-value=75 Score=34.39 Aligned_cols=22 Identities=23% Similarity=0.320 Sum_probs=16.3
Q ss_pred hhhHHHHHHHHHHHHHHHHHhh
Q psy1512 130 LVIWFCLDYMADLMYVIDILIH 151 (679)
Q Consensus 130 ~~~~~~~~~i~d~~f~~Di~l~ 151 (679)
...|.++|+++-+.+++++++.
T Consensus 271 ks~wniiDli~iip~~i~l~~~ 292 (514)
T 2r9r_B 271 TNIMNIIDIVAIIPYYVTIFLT 292 (514)
T ss_dssp TSHHHHHHHHTTHHHHHHHHHH
T ss_pred hchhHHHHHHHHHHHHHHHHhh
Confidence 3457788988888888877654
No 121
>3bcw_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 1.60A {Bordetella bronchiseptica RB50}
Probab=43.49 E-value=21 Score=30.48 Aligned_cols=30 Identities=23% Similarity=0.402 Sum_probs=24.0
Q ss_pred CceEEEEEeeEEEEEecCCceEeEEcCCCCee
Q psy1512 612 GKEMYIVNRGRLQVVADNGKTVLATLRAGSYF 643 (679)
Q Consensus 612 g~~~yiI~~G~v~v~~~~~~~~i~~L~~G~~F 643 (679)
+++++.|.+|++.+..++++ ..+|++||.+
T Consensus 68 ~~E~~~Vl~G~~~l~~~~g~--~~~l~~GD~~ 97 (123)
T 3bcw_A 68 YIEYCHIIEGEARLVDPDGT--VHAVKAGDAF 97 (123)
T ss_dssp EEEEEEEEEEEEEEECTTCC--EEEEETTCEE
T ss_pred CcEEEEEEEEEEEEEECCCe--EEEECCCCEE
Confidence 38999999999999874443 3479999975
No 122
>2pyt_A Ethanolamine utilization protein EUTQ; structural genomics, joint center for structural genomics, J protein structure initiative; 1.90A {Salmonella typhimurium LT2} SCOP: b.82.1.24
Probab=38.40 E-value=33 Score=29.62 Aligned_cols=29 Identities=28% Similarity=0.407 Sum_probs=23.6
Q ss_pred CceEEEEEeeEEEEEecCCceEeEEcCCCCee
Q psy1512 612 GKEMYIVNRGRLQVVADNGKTVLATLRAGSYF 643 (679)
Q Consensus 612 g~~~yiI~~G~v~v~~~~~~~~i~~L~~G~~F 643 (679)
+++++.|.+|++++..+ ++ ...|++||.|
T Consensus 75 ~~E~~~VLeG~~~l~~~-g~--~~~l~~GD~i 103 (133)
T 2pyt_A 75 YDEIDMVLEGELHVRHE-GE--TMIAKAGDVM 103 (133)
T ss_dssp SEEEEEEEEEEEEEEET-TE--EEEEETTCEE
T ss_pred CCEEEEEEECEEEEEEC-CE--EEEECCCcEE
Confidence 78999999999999876 32 2379999975
No 123
>1o5u_A Novel thermotoga maritima enzyme TM1112; cupin, structural genomics center for structural genomics, JCSG, protein structure INI PSI; 1.83A {Thermotoga maritima} SCOP: b.82.1.8 PDB: 1lkn_A 2k9z_A
Probab=33.96 E-value=57 Score=26.56 Aligned_cols=31 Identities=19% Similarity=0.392 Sum_probs=24.0
Q ss_pred CCceEEEEEeeEEEEEecCCceEeEEcCCCCee
Q psy1512 611 VGKEMYIVNRGRLQVVADNGKTVLATLRAGSYF 643 (679)
Q Consensus 611 ~g~~~yiI~~G~v~v~~~~~~~~i~~L~~G~~F 643 (679)
.+.+++.|.+|++++..+++. .-.|++||.+
T Consensus 48 ~~~E~~~Vl~G~~~~~i~~g~--~~~l~~GD~i 78 (101)
T 1o5u_A 48 DTNETCYILEGKVEVTTEDGK--KYVIEKGDLV 78 (101)
T ss_dssp SSCEEEEEEEEEEEEEETTCC--EEEEETTCEE
T ss_pred CceEEEEEEeCEEEEEECCCC--EEEECCCCEE
Confidence 367999999999999876332 3479999964
No 124
>3lwc_A Uncharacterized protein; structural genomics, unknown function, joint center for STRU genomics, JCSG, protein structure initiative; HET: MSE; 1.40A {Rhizobium leguminosarum}
Probab=32.69 E-value=47 Score=27.94 Aligned_cols=30 Identities=33% Similarity=0.477 Sum_probs=24.2
Q ss_pred CCceEEEEEeeEEEEEecCCceEeEEcCCCCee
Q psy1512 611 VGKEMYIVNRGRLQVVADNGKTVLATLRAGSYF 643 (679)
Q Consensus 611 ~g~~~yiI~~G~v~v~~~~~~~~i~~L~~G~~F 643 (679)
..+++++|.+|++++..+ ++ ...|++||.+
T Consensus 58 ~~~E~~~Vl~G~~~~~~~-g~--~~~l~~GD~v 87 (119)
T 3lwc_A 58 AVDDVMIVLEGRLSVSTD-GE--TVTAGPGEIV 87 (119)
T ss_dssp SSEEEEEEEEEEEEEEET-TE--EEEECTTCEE
T ss_pred CCCEEEEEEeCEEEEEEC-CE--EEEECCCCEE
Confidence 578999999999999874 32 3479999975
No 125
>2vpv_A Protein MIF2, MIF2P; nucleus, mitosis, centromere, cell cycle, DNA-binding, kinetochore, cell division, phosphoprotein, jelly-roll fold; 2.7A {Saccharomyces cerevisiae}
Probab=32.25 E-value=31 Score=31.19 Aligned_cols=30 Identities=20% Similarity=0.107 Sum_probs=24.0
Q ss_pred CCceEEEEEeeEEEEEecCCceEeEEcCCCCee
Q psy1512 611 VGKEMYIVNRGRLQVVADNGKTVLATLRAGSYF 643 (679)
Q Consensus 611 ~g~~~yiI~~G~v~v~~~~~~~~i~~L~~G~~F 643 (679)
.+..+++|.+|+++|+-++. .-.|++||+|
T Consensus 109 ~gEE~~yVLeG~v~vtl~g~---~~~L~~Gds~ 138 (166)
T 2vpv_A 109 RTYITFHVIQGIVEVTVCKN---KFLSVKGSTF 138 (166)
T ss_dssp SEEEEEEEEESEEEEEETTE---EEEEETTCEE
T ss_pred CceEEEEEEEeEEEEEECCE---EEEEcCCCEE
Confidence 46789999999999987643 3379999975
No 126
>1yfu_A 3-hydroxyanthranilate-3,4-dioxygenase; cupin, oxidoreductase; 1.90A {Cupriavidus metallidurans} SCOP: b.82.1.20 PDB: 1yfw_A* 1yfx_A* 1yfy_A*
Probab=31.78 E-value=45 Score=30.28 Aligned_cols=33 Identities=24% Similarity=0.277 Sum_probs=25.9
Q ss_pred CCceEEEEEeeEEEEEecC-CceEeEEcCCCCee
Q psy1512 611 VGKEMYIVNRGRLQVVADN-GKTVLATLRAGSYF 643 (679)
Q Consensus 611 ~g~~~yiI~~G~v~v~~~~-~~~~i~~L~~G~~F 643 (679)
.++++|.+.+|+..+.-.+ ++..-..|++||.|
T Consensus 54 ~~dE~FyvlkG~m~i~v~d~g~~~~v~l~eGE~f 87 (174)
T 1yfu_A 54 PLEEFFYQLRGNAYLNLWVDGRRERADLKEGDIF 87 (174)
T ss_dssp SSCEEEEEEESCEEEEEEETTEEEEEEECTTCEE
T ss_pred CCceEEEEEeeEEEEEEEcCCceeeEEECCCCEE
Confidence 5789999999999987533 43456789999976
No 127
>3myx_A Uncharacterized protein pspto_0244; protein of unknown function (DUF861), cupin_3 (PF05899), STR genomics; HET: MSE; 1.30A {Pseudomonas syringae PV}
Probab=29.20 E-value=47 Score=31.98 Aligned_cols=30 Identities=23% Similarity=0.340 Sum_probs=24.7
Q ss_pred CceEEEEEeeEEEEEecCCceEeEEcCCCCee
Q psy1512 612 GKEMYIVNRGRLQVVADNGKTVLATLRAGSYF 643 (679)
Q Consensus 612 g~~~yiI~~G~v~v~~~~~~~~i~~L~~G~~F 643 (679)
.+++..|++|++.++.++++ -.++++||.|
T Consensus 186 ~~E~~~ILeG~v~lt~~~G~--~~~~~aGD~~ 215 (238)
T 3myx_A 186 IHELMNLIEGRVVLSLENGS--SLTVNTGDTV 215 (238)
T ss_dssp SCEEEEEEECCEEEEETTSC--EEEECTTCEE
T ss_pred CCEEEEEEEeEEEEEeCCCC--EEEECCCCEE
Confidence 46889999999999987665 3579999965
No 128
>1orq_C Potassium channel; voltage-dependent, KVAP, FAB complex, MEM protein; 3.20A {Aeropyrum pernix} SCOP: f.14.1.1 PDB: 2a0l_A
Probab=28.62 E-value=3.5e+02 Score=24.91 Aligned_cols=16 Identities=25% Similarity=0.592 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHH
Q psy1512 200 SILRLFRLVKIYRFWA 215 (679)
Q Consensus 200 ~~lrl~rllrl~rl~~ 215 (679)
+.+|++|++|+.|+.+
T Consensus 100 r~lRllRllR~~r~~~ 115 (223)
T 1orq_C 100 RLVRLLRFLRILLIIS 115 (223)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4566666666666654
No 129
>2opk_A Hypothetical protein; putative mannose-6-phosphate isomerase, structural genomics, center for structural genomics, JCSG; 2.10A {Ralstonia eutropha}
Probab=26.89 E-value=51 Score=27.24 Aligned_cols=33 Identities=15% Similarity=0.308 Sum_probs=24.7
Q ss_pred CCCceEEEEEeeEEEEEecCCceEeEEcCCCCee
Q psy1512 610 EVGKEMYIVNRGRLQVVADNGKTVLATLRAGSYF 643 (679)
Q Consensus 610 e~g~~~yiI~~G~v~v~~~~~~~~i~~L~~G~~F 643 (679)
..+++++++.+|++++.-+++. .--.|++||.+
T Consensus 51 ~~~~E~~~Vl~G~~~l~~~~~~-~~~~l~~Gd~i 83 (112)
T 2opk_A 51 SPQDEWVMVVSGSAGIECEGDT-APRVMRPGDWL 83 (112)
T ss_dssp CSSEEEEEEEESCEEEEETTCS-SCEEECTTEEE
T ss_pred CCccEEEEEEeCeEEEEECCEE-EEEEECCCCEE
Confidence 3577999999999999876543 11469999864
No 130
>4axo_A EUTQ, ethanolamine utilization protein; structural protein, bacterial microcompartment, BMC; 1.00A {Clostridium difficile}
Probab=26.22 E-value=62 Score=28.68 Aligned_cols=30 Identities=23% Similarity=0.389 Sum_probs=23.5
Q ss_pred CCceEEEEEeeEEEEEecCCceEeEEcCCCCee
Q psy1512 611 VGKEMYIVNRGRLQVVADNGKTVLATLRAGSYF 643 (679)
Q Consensus 611 ~g~~~yiI~~G~v~v~~~~~~~~i~~L~~G~~F 643 (679)
.+++++.|.+|++++..+ ++ ...|++||.+
T Consensus 83 ~~eE~~yVLeG~~~l~i~-g~--~~~l~~GD~i 112 (151)
T 4axo_A 83 NYDEIDYVIDGTLDIIID-GR--KVSASSGELI 112 (151)
T ss_dssp SSEEEEEEEEEEEEEEET-TE--EEEEETTCEE
T ss_pred CCcEEEEEEEeEEEEEEC-CE--EEEEcCCCEE
Confidence 367889999999999874 32 4579999964
No 131
>2fqp_A Hypothetical protein BP2299; double-stranded beta-helix fold, structural genomics, joint for structural genomics, JCSG; HET: 1PE; 1.80A {Bordetella pertussis tohama I}
Probab=23.48 E-value=59 Score=25.83 Aligned_cols=31 Identities=19% Similarity=0.275 Sum_probs=23.8
Q ss_pred ceEEEEEeeEEEEEecCCceEeEEcCCCCeee
Q psy1512 613 KEMYIVNRGRLQVVADNGKTVLATLRAGSYFG 644 (679)
Q Consensus 613 ~~~yiI~~G~v~v~~~~~~~~i~~L~~G~~FG 644 (679)
..++.|.+|++++..+++. ....|++||.+=
T Consensus 40 ~e~~~Vl~G~~~~~~~~g~-~~~~l~~Gd~~~ 70 (97)
T 2fqp_A 40 YVVVPMTTGPLLLETPEGS-VTSQLTRGVSYT 70 (97)
T ss_dssp EEEEESSCEEEEEEETTEE-EEEEECTTCCEE
T ss_pred cEEEEEeecEEEEEeCCCC-EEEEEcCCCEEE
Confidence 3599999999999876542 345799999763
No 132
>2ozj_A Cupin 2, conserved barrel; cupin superfamily protein, struct genomics, joint center for structural genomics, JCSG; HET: MSE; 1.60A {Desulfitobacterium hafniense}
Probab=22.50 E-value=1e+02 Score=25.07 Aligned_cols=43 Identities=12% Similarity=0.196 Sum_probs=28.7
Q ss_pred CCceEEEEEeeEEEEEecCCceEeEEcCCCCeeeeeccccCC-ceEEEEee
Q psy1512 611 VGKEMYIVNRGRLQVVADNGKTVLATLRAGSYFGEISILNMG-TAGTNLIQ 660 (679)
Q Consensus 611 ~g~~~yiI~~G~v~v~~~~~~~~i~~L~~G~~FGE~all~~~-~~t~~a~~ 660 (679)
.+..++++.+|++++.-++. .-.|++||.+ ++..+ .=+..+.+
T Consensus 57 ~~~e~~~vl~G~~~~~i~~~---~~~l~~Gd~i----~i~~~~~H~~~~~~ 100 (114)
T 2ozj_A 57 FGDTLYLILQGEAVITFDDQ---KIDLVPEDVL----MVPAHKIHAIAGKG 100 (114)
T ss_dssp SSCEEEEEEEEEEEEEETTE---EEEECTTCEE----EECTTCCBEEEEEE
T ss_pred CCCeEEEEEeCEEEEEECCE---EEEecCCCEE----EECCCCcEEEEeCC
Confidence 46789999999999987532 3469999853 34443 44444443
No 133
>1zvf_A 3-hydroxyanthranilate 3,4-dioxygenase; jellyroll beta-barrel, oxidoreductase; 2.41A {Saccharomyces cerevisiae} SCOP: b.82.1.20
Probab=22.20 E-value=76 Score=28.78 Aligned_cols=34 Identities=12% Similarity=0.242 Sum_probs=25.1
Q ss_pred CCCceEEEEEeeEEEEEecC-C----ceEeEEcCCCCee
Q psy1512 610 EVGKEMYIVNRGRLQVVADN-G----KTVLATLRAGSYF 643 (679)
Q Consensus 610 e~g~~~yiI~~G~v~v~~~~-~----~~~i~~L~~G~~F 643 (679)
+..+++|.+.+|+..+.-.+ + ...-..|++||.|
T Consensus 52 ~~~eE~Fy~lkG~m~l~v~d~g~~~~~~~dv~i~eGdmf 90 (176)
T 1zvf_A 52 NPTPEWFYQKKGSMLLKVVDETDAEPKFIDIIINEGDSY 90 (176)
T ss_dssp CSSCEEEEEEESCEEEEEEECSSSSCEEEEEEECTTEEE
T ss_pred CCCceEEEEEeCEEEEEEEcCCCcccceeeEEECCCCEE
Confidence 35679999999999987533 3 2345688998876
Done!