RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy1512
(679 letters)
>d1q3ea_ b.82.3.2 (A:) HCN pacemaker channel {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 193
Score = 66.6 bits (161), Expect = 3e-13
Identities = 39/203 (19%), Positives = 78/203 (38%), Gaps = 11/203 (5%)
Query: 334 AARKEFQAKLDGVKTYMRMRRVPNALQVKVIKWFDYLWLTQKCSDEEKAVSCLPGPGSSS 393
++R+++Q K V+ YM ++P + K+ ++++ + + DE+ + L GP
Sbjct: 2 SSRRQYQEKYKQVEQYMSFHKLPADFRQKIHDYYEHRYQGKMF-DEDSILGELNGPLREE 60
Query: 394 TKLVHGGQYELEEIAIVSNQATPNQVKYGSGPLYMSANGPKVVPDKLKAEIAINVHLDTL 453
+ + + + +N + + + + + +
Sbjct: 61 IVN-FNCRKLVASMPLFANADPNFVTAMLTKLKFEVFQPGDYIIREGTIGKKMYFIQHGV 119
Query: 454 KRVEIFQNTEAGFLCELVLRLRPVLFSPGDYICRKGNRRTASVRSVGYSDLFVLSKTDMW 513
V N E G+ RRTASVR+ Y L+ LS +
Sbjct: 120 VSVLTKGNKEMKLSDGSYF---------GEICLLTRGRRTASVRADTYCRLYSLSVDNFN 170
Query: 514 DVLKEYPAARVRLESIAVKRLQK 536
+VL+EYP R E++A+ RL +
Sbjct: 171 EVLEEYPMMRRAFETVAIDRLDR 193
Score = 45.0 bits (105), Expect = 8e-06
Identities = 37/164 (22%), Positives = 65/164 (39%), Gaps = 24/164 (14%)
Query: 437 PDKLKAEIAINVHLDTLKRVEIFQNTEAGFLCELVLRLRPVLFSPGDYICRKGNRRTASV 496
L+ EI + + +F N + F+ ++ +L+ +F PGDYI R+G
Sbjct: 54 NGPLREEIVNFNCRKLVASMPLFANADPNFVTAMLTKLKFEVFQPGDYIIREGTI----- 108
Query: 497 RSVGYSDLFVLSKTDMWDVLKEYPAARVRLESIAVKRLQKYKRTPLEKGISPSPFPGNRR 556
++ + + + K + + RR
Sbjct: 109 ----GKKMYFIQHGVVSVLTKGNKEMK---------------LSDGSYFGEICLLTRGRR 149
Query: 557 TASVRSVGYSDLFVLSKTDMWDVLKEYPAARVRLESIAVKRLQK 600
TASVR+ Y L+ LS + +VL+EYP R E++A+ RL +
Sbjct: 150 TASVRADTYCRLYSLSVDNFNEVLEEYPMMRRAFETVAIDRLDR 193
>d1ne6a2 b.82.3.2 (A:245-376) Regulatory subunit of Protein kinase A
{Cow (Bos taurus) [TaxId: 9913]}
Length = 132
Score = 56.3 bits (135), Expect = 3e-10
Identities = 24/153 (15%), Positives = 40/153 (26%), Gaps = 25/153 (16%)
Query: 451 DTLKRVEIFQNTEAGFLCELVLRLRPVLFSPGDYICRKGNRRTASVRSVGYSDLFVLSKT 510
+ L +V I ++ + + L PV F G I +G
Sbjct: 2 EFLSKVSILESLDKWERLTVADALEPVQFEDGQKIVVQGEPGDE---------------- 45
Query: 511 DMWDVLKEYPAARVRLESIAVKRLQKYKRTPLEKGISPSPFPGNRRTASVRSVGYSDLFV 570
+ +L+ A R G R A+V + G
Sbjct: 46 -FFIILEGSAAVLQRRSENEEFVEVGRLGPSDYFGEIA-LLMNRPRAATVVARGPLKCVK 103
Query: 571 LSKTDMWDVLKEYPAARVRLESIAVKRLQKYKR 603
L + VL I + +Q+Y
Sbjct: 104 LDRPRFERVLGPCS-------DILKRNIQQYNS 129
>d1vp6a_ b.82.3.2 (A:) Putative ion channel CnbD {Mesorhizobium loti
[TaxId: 381]}
Length = 133
Score = 55.9 bits (134), Expect = 5e-10
Identities = 23/152 (15%), Positives = 39/152 (25%), Gaps = 26/152 (17%)
Query: 446 INVHLDTLKRVEIFQNTEAGFLCELVLRLRPVLFSPGDYICRKGNRRTASVRSVGYSDLF 505
+ + V +FQ L E+V LR G ICR G
Sbjct: 6 FVRNWQLVAAVPLFQKLGPAVLVEIVRALRARTVPAGAVICRIGEP--GDRMFFVVEGSV 63
Query: 506 VLSKTDMWDVLKEYPAARVRLESIAVKRLQKYKRTPLEKGISPSPFPGNRRTASVRSVGY 565
++ + ++ + G R+A+V +
Sbjct: 64 SVATPNPVELGPGAF------------------------FGEMALISGEPRSATVSAATT 99
Query: 566 SDLFVLSKTDMWDVLKEYPAARVRLESIAVKR 597
L L D + P A++R
Sbjct: 100 VSLLSLHSADFQMLCSSSPEIAEIFRKTALER 131
>d1cx4a2 b.82.3.2 (A:266-412) Regulatory subunit of Protein kinase A
{Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 147
Score = 55.6 bits (133), Expect = 9e-10
Identities = 14/148 (9%), Positives = 48/148 (32%), Gaps = 13/148 (8%)
Query: 453 LKRVEIFQNTEAGFLCELVLRLRPVLFSPGDYICRKGNRRTASVRSVGYSDLFVLSKTDM 512
++ + ++ E ++V + +++ G+ I +G+ +D F + ++
Sbjct: 4 IESLPFLKSLEVSERLKVVDVIGTKVYNDGEQIIAQGD----------SADSFFIVESGE 53
Query: 513 WDVLKEYPAARVRLESIAVKRLQKYKRTPLEKGISPSPFPGNRRTASVRSVGYSDLFVLS 572
+ + + + ++ + + + R AS ++G +
Sbjct: 54 VRITMKRKG---KSDIEENGAVEIARCLRGQYFGELALVTNKPRAASAHAIGTVKCLAMD 110
Query: 573 KTDMWDVLKEYPAARVRLESIAVKRLQK 600
+L R + ++L
Sbjct: 111 VQAFERLLGPCMEIMKRNIATYEEQLVA 138
>d1cx4a1 b.82.3.2 (A:130-265) Regulatory subunit of Protein kinase A
{Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 136
Score = 54.8 bits (131), Expect = 1e-09
Identities = 16/150 (10%), Positives = 48/150 (32%), Gaps = 20/150 (13%)
Query: 441 KAEIAINVHLDTLKRVEIFQNTEAGFLCELVLRLRPVLFSPGDYICRKGNRRTASVRSVG 500
K + N + K + +F+N + + +++ + L G+++ +G+
Sbjct: 6 KTDDQRNRLQEACKDILLFKNLDPEQMSQVLDAMFEKLVKEGEHVIDQGDDGDN------ 59
Query: 501 YSDLFVLSKTDMWDVLKEYPAARVRLESIAVKRLQKYKRTPLEKGISPSPFPGNRRTASV 560
+V+ + +K R + R A++
Sbjct: 60 ---FYVIDRGTFDIYVKCDGVGRCV-----------GNYDNRGSFGELALMYNTPRAATI 105
Query: 561 RSVGYSDLFVLSKTDMWDVLKEYPAARVRL 590
+ L+ L + ++ + A + ++
Sbjct: 106 TATSPGALWGLDRVTFRRIIVKNNAKKRKM 135
>d1ne6a1 b.82.3.2 (A:109-244) Regulatory subunit of Protein kinase A
{Cow (Bos taurus) [TaxId: 9913]}
Length = 136
Score = 54.3 bits (130), Expect = 2e-09
Identities = 19/158 (12%), Positives = 51/158 (32%), Gaps = 27/158 (17%)
Query: 433 PKVVPDKLKAEIAINVHLDTLKRVEIFQNTEAGFLCELVLRLRPVLFSPGDYICRKGNRR 492
KV+P K + +++ +F + + ++ + PV F G+ + ++G+
Sbjct: 5 RKVIP---KDYKTMAALAKAIEKNVLFSHLDDNERSDIFDAMFPVSFIAGETVIQQGDEG 61
Query: 493 TASVRSVGYSDLFVLSKTDMWDVLKEYPAARVRLESIAVKRLQKYKRTPLEKGISPSPFP 552
+V+ + +M + A +
Sbjct: 62 DN---------FYVIDQGEMDVYVNNEWATS---------------VGEGGSFGELALIY 97
Query: 553 GNRRTASVRSVGYSDLFVLSKTDMWDVLKEYPAARVRL 590
G R A+V++ L+ + + +L + ++
Sbjct: 98 GTPRAATVKAKTNVKLWGIDRDSYRRILMGSTLRKRKM 135
>d1wgpa_ b.82.3.2 (A:) Probable cyclic nucleotide-gated ion channel
6 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Length = 137
Score = 50.3 bits (119), Expect = 4e-08
Identities = 21/133 (15%), Positives = 47/133 (35%), Gaps = 11/133 (8%)
Query: 453 LKRVEIFQNTEAGFLCELVLRLRPVLFSPGDYICRKGNRRTASVRSVGYSDLFVLSKTDM 512
++RV +F+N + L + RL+P LF+ Y+ R+G+ + +
Sbjct: 8 VRRVPLFENMDERLLDAICERLKPCLFTEKSYLVREGD----------PVNEMLFIIRGR 57
Query: 513 WDVLKEYPAARVRLESIAVKRLQKYKRTPLEKGISPSPF-PGNRRTASVRSVGYSDLFVL 571
+ + +K L + P T +V+++ + F L
Sbjct: 58 LESVTTDGGRSGFYNRSLLKEGDFCGDELLTWALDPKSGSNLPSSTRTVKALTEVEAFAL 117
Query: 572 SKTDMWDVLKEYP 584
++ V ++
Sbjct: 118 IADELKFVASQFR 130
>d1o7fa2 b.82.3.2 (A:13-167) Regulatory domain of Epac2, domains 1
and 3 {Mouse (Mus musculus) [TaxId: 10090]}
Length = 155
Score = 50.6 bits (120), Expect = 5e-08
Identities = 19/159 (11%), Positives = 49/159 (30%), Gaps = 18/159 (11%)
Query: 441 KAEIAINVHLDTLKRVEIFQNTEAGFLCELVLRLRPVLFSPGDYICRKGNRRTASVRSVG 500
++ +++ LK V+ F+ L ++ L G + R+G+ T
Sbjct: 14 RSSEDVDIIFTRLKGVKAFEKFHPNLLRQICLCGYYENLEKGITLFRQGDIGTN------ 67
Query: 501 YSDLFVLSKTDMWDVLKEYPAARVRLESIAVKRLQKYKRTPLEKGISPSPFPGNRRTASV 560
+ + L + + E + +P A++
Sbjct: 68 ---WYA----VLAGSLDVKVSETSSHQDAVTICTLGIGTAFGESILDNTPRH-----ATI 115
Query: 561 RSVGYSDLFVLSKTDMWDVLKEYPAARVRLESIAVKRLQ 599
+ S+L + + D + ++Y L + ++
Sbjct: 116 VTRESSELLRIEQEDFKALWEKYRQYMAGLLAPPYGVME 154
>d1lnqa2 f.14.1.1 (A:19-98) Potassium channel-related protein MthK
{Archaeon Methanothermobacter thermautotrophicus [TaxId:
145262]}
Length = 80
Score = 46.6 bits (111), Expect = 2e-07
Identities = 10/53 (18%), Positives = 23/53 (43%), Gaps = 1/53 (1%)
Query: 278 YLQSYYWCTLALTTIG-DLPRPRSKGEYFFVIVQLLFGLLLFATVLGHVANIV 329
+ S YW + + T+G P + +F + ++ G+ FA + + +
Sbjct: 28 WTVSLYWTFVTIATVGYGDYSPSTPLGMYFTVTLIVLGIGTFAVAVERLLEFL 80
>d1o7fa3 b.82.3.2 (A:322-445) Regulatory domain of Epac2, domains 1
and 3 {Mouse (Mus musculus) [TaxId: 10090]}
Length = 124
Score = 44.3 bits (104), Expect = 4e-06
Identities = 15/142 (10%), Positives = 35/142 (24%), Gaps = 25/142 (17%)
Query: 446 INVHLDTLKRVEIFQNTEAGFLCELVLRLRP-VLFSPGDYICRKGNRRTASVRSVGYSDL 504
+ + D L ++ + EL L G + +G
Sbjct: 5 LEIIYDELLHIKALSHLSTTVKRELAGVLIFESHAKGGTVLFNQG--------------- 49
Query: 505 FVLSKTDMWDVLKEYPAARVRLESIAVKRLQKYKRTPLEKGISPSPFPGNRRTASVRSVG 564
+ Y + + + + + + R AS+
Sbjct: 50 ------EEGTSW--YIILKGSVNVVIYGKGVVCTLHEGDDFGKLALVNDAPRAASIVLRE 101
Query: 565 YS-DLFVLSKTDMWDVLKEYPA 585
+ + K D +L++ A
Sbjct: 102 DNCHFLRVDKEDFNRILRDVEA 123
>d2gaua2 b.82.3.2 (A:10-151) Transcriptional regulator PG0396,
N-terminal domain {Porphyromonas gingivalis [TaxId:
837]}
Length = 142
Score = 43.3 bits (101), Expect = 1e-05
Identities = 15/147 (10%), Positives = 38/147 (25%), Gaps = 19/147 (12%)
Query: 457 EIFQNTEAGFLCELVLRLRPVLFSPGDYICRKGNRRTASVRSVGYSDLFVLSKTDMWDVL 516
+++ L ++P + +G+ LF L + + +
Sbjct: 7 DVWSLLNEEERELLDKEIQPFPCKKASTVFSEGDIPNN---------LFYLYEGKIKILR 57
Query: 517 KEYPAARVRLESIAVKRLQKYKRTPLEKGISPSPFPGNRRTASVRSVGYSDLFVLSKTDM 576
+ P + F +++ +V S + + +
Sbjct: 58 EGVYGRFHIS----------RIVKPGQFFGMRPYFAEETCSSTAIAVENSKVLAIPVEAI 107
Query: 577 WDVLKEYPAARVRLESIAVKRLQKYKR 603
+LK + K L +R
Sbjct: 108 EALLKGNTSFCRYFLKALAKELGYAER 134
>d2oz6a2 b.82.3.2 (A:9-142) Cyclic AMP receptor-like protein Vfr
{Pseudomonas aeruginosa [TaxId: 287]}
Length = 134
Score = 37.9 bits (87), Expect = 9e-04
Identities = 20/134 (14%), Positives = 43/134 (32%), Gaps = 15/134 (11%)
Query: 467 LCELVLRLRPVLFSPGDYICRKGNRRTASVRSVGYSDLFVLSKTDMWDVLKEYPAARVRL 526
L +L+ ++ I G+R LF + K + ++++
Sbjct: 5 LDKLLAHCHRRRYTAKSTIIYAGDRCET---------LFFIIKGSVTILIEDDD------ 49
Query: 527 ESIAVKRLQKYKRTPLEKGISPSPFPGNRRTASVRSVGYSDLFVLSKTDMWDVLKEYPAA 586
+ E G+ R+A VR+ ++ +S ++ ++
Sbjct: 50 GREMIIGYLNSGDFFGELGLFEKEGSEQERSAWVRAKVECEVAEISYAKFRELSQQDSEI 109
Query: 587 RVRLESIAVKRLQK 600
L S RL+K
Sbjct: 110 LYTLGSQMADRLRK 123
>d1xl4a2 f.14.1.1 (A:23-138) Inward rectifier potassium channel
kirbac3.1 {Magnetospirillum magnetotacticum [TaxId:
188]}
Length = 116
Score = 37.3 bits (86), Expect = 0.001
Identities = 19/108 (17%), Positives = 35/108 (32%), Gaps = 12/108 (11%)
Query: 226 YPNLFRSSSLIHYLLVIFHWNG--CLYHIIYKNDGFGSRNWVYGDSDTTDVVKQYLQSYY 283
Y +L S + L+ + L+ + Y G N G + +++
Sbjct: 16 YHDLLTVSWPVFITLITGLYLVTNALFALAYLACGDVIENARPG---------SFTDAFF 66
Query: 284 WCTLALTTIG-DLPRPRSKGEYFFVIVQLLFGLLLFATVLGHVANIVT 330
+ + TIG P V ++ L G+L A + T
Sbjct: 67 FSVQTMATIGYGKLIPIGPLANTLVTLEALCGMLGLAVAASLIYARFT 114
>d1p7ba2 f.14.1.1 (A:36-151) Inward rectifier potassium channel
Kirbac1.1 {Burkholderia pseudomallei [TaxId: 28450]}
Length = 116
Score = 37.3 bits (86), Expect = 0.001
Identities = 14/98 (14%), Positives = 33/98 (33%), Gaps = 10/98 (10%)
Query: 234 SLIHYLLVIFHWNGCLYHIIYKNDGFGSRNWVYGDSDTTDVVKQYLQSYYWCTLALTTIG 293
L +F N L+ ++Y+ N ++ ++++ L T+G
Sbjct: 27 VFFASLAALFVVNNTLFALLYQLGDAPIAN---------QSPPGFVGAFFFSVETLATVG 77
Query: 294 DL-PRPRSKGEYFFVIVQLLFGLLLFATVLGHVANIVT 330
P++ + +++ G+ A G V
Sbjct: 78 YGDMHPQTVYAHAIATLEIFVGMSGIALSTGLVFARFA 115
>d1r3jc_ f.14.1.1 (C:) Potassium channel protein {Streptomyces
coelicolor [TaxId: 1902]}
Length = 103
Score = 36.1 bits (83), Expect = 0.002
Identities = 19/109 (17%), Positives = 39/109 (35%), Gaps = 13/109 (11%)
Query: 230 FRSSSLIHYLLVIFHWNGCLYHIIYKNDGFGSRNWVYGDSDTTDVVKQYLQSYYWCTLAL 289
+R++ LLVI G ++ + G++ + Y ++ +W
Sbjct: 5 WRAAGAATVLLVIVLLAGSYLAVLAERGAPGAQ------------LITYPRALWWSVETA 52
Query: 290 TTIG-DLPRPRSKGEYFFVIVQLLFGLLLFATVLGHVANIVTSVSAARK 337
TT+G P + +V ++ G+ F V +A R+
Sbjct: 53 TTVGYGDLYPVTLWGRCVAVVVMVAGITSFGLVTAALATWFVGREQERR 101
>d1i5za2 b.82.3.2 (A:6-137) Catabolite gene activator protein,
N-terminal domain {Escherichia coli [TaxId: 562]}
Length = 132
Score = 33.7 bits (76), Expect = 0.021
Identities = 18/123 (14%), Positives = 40/123 (32%), Gaps = 20/123 (16%)
Query: 479 FSPGDYICRKGNRRTASVRSVGYSDLFVLSKTDMWDVLKEYPAARVRLESIAVKRLQKYK 538
+ + +G + L+ + K + V ++ K +
Sbjct: 18 YPSKSTLIHQGEKAET---------LYYIVKGSVA----------VLIKDEEGKEMILSY 58
Query: 539 RTPLEKGISPSPF-PGNRRTASVRSVGYSDLFVLSKTDMWDVLKEYPAARVRLESIAVKR 597
+ F G R+A VR+ ++ +S +++ P +RL + +R
Sbjct: 59 LNQGDFIGELGLFEEGQERSAWVRAKTACEVAEISYKKFRQLIQVNPDILMRLSAQMARR 118
Query: 598 LQK 600
LQ
Sbjct: 119 LQV 121
>d1zyba2 b.82.3.2 (A:1-147) Probable transcription regulator BT4300,
N-terminal domain {Bacteroides thetaiotaomicron [TaxId:
818]}
Length = 147
Score = 30.3 bits (67), Expect = 0.33
Identities = 20/153 (13%), Positives = 40/153 (26%), Gaps = 20/153 (13%)
Query: 450 LDTLKRVEIFQNTEAGFLCELV--LRLRPVLFSPGDYICRKGNRRTASVRSVGYSDLFVL 507
DTL ++ +FQ ++ ++L + G+ I + GN
Sbjct: 5 FDTLLQLPLFQGLCHEDFTSILDKVKLHFIKHKAGETIIKSGN----------PCTQLCF 54
Query: 508 SKTDMWDVLKEYPAARVRLESIAVKRLQKYKRTPLEKGISPSPFPGNRRTASVRSVGYSD 567
++ + + P +S +
Sbjct: 55 LLKGEISIVTNAKENI--------YTVIEQIEAPYLIEPQSLFGMNTNYASSYVAHTEVH 106
Query: 568 LFVLSKTDMWDVLKEYPAARVRLESIAVKRLQK 600
+SK + L Y R+ +I R Q
Sbjct: 107 TVCISKAFVLSDLFRYDIFRLNYMNIVSNRAQN 139
>d2zcwa2 b.82.3.2 (A:6-117) Transcriptional regulator TTHA1359,
N-terminal domain {Thermus thermophilus [TaxId: 274]}
Length = 112
Score = 29.2 bits (64), Expect = 0.59
Identities = 14/124 (11%), Positives = 31/124 (25%), Gaps = 18/124 (14%)
Query: 477 VLFSPGDYICRKGNRRTASVRSVGYSDLFVLSKTDMWDVLKEYPAARVRLESIAVKRLQK 536
V F GD I G + + + + +
Sbjct: 3 VSFKAGDVILYPGVPGPR-------DRAYRVLEGLVRLEAVDEEGNA-----------LT 44
Query: 537 YKRTPLEKGISPSPFPGNRRTASVRSVGYSDLFVLSKTDMWDVLKEYPAARVRLESIAVK 596
+ G R + L L + ++LK+ + + A +
Sbjct: 45 LRLVRPGGFFGEEALFGQERIYFAEAATDVRLEPLPENPDPELLKDLAQHLSQGLAEAYR 104
Query: 597 RLQK 600
R+++
Sbjct: 105 RIER 108
>d1o5la1 b.82.3.2 (A:1-129) CRP-like transcriptional regulator
TM1171, N-terminal domain {Thermotoga maritima [TaxId:
2336]}
Length = 129
Score = 29.2 bits (64), Expect = 0.74
Identities = 10/133 (7%), Positives = 33/133 (24%), Gaps = 18/133 (13%)
Query: 467 LCELVLRLRPVLFSPGDYICRKGNRRTASVRSVGYSDLFVLSKTDMWDVLKEYPAARVRL 526
L +L+ + ++F G+ + + + + ++ +
Sbjct: 3 LKKLLPCGKVIVFRKGEIVKHQDD----------PIEDVLILLEGTLKTEHVSENGK--- 49
Query: 527 ESIAVKRLQKYKRTPLEKGISPSPFPGNRRTASVRSVGYSDLFVLSKTDMWDVLKEYPAA 586
+ R +V + S + + K D+L +
Sbjct: 50 -----TLEIDEIKPVQIIASGFIFSSEPRFPVNVVAGENSKILSIPKEVFLDLLMKDREL 104
Query: 587 RVRLESIAVKRLQ 599
+ + +
Sbjct: 105 LLFFLKDVSEHFR 117
>d1oqca_ a.24.15.1 (A:) Augmenter of liver regeneration {Rat (Rattus
norvegicus) [TaxId: 10116]}
Length = 112
Score = 28.8 bits (64), Expect = 0.77
Identities = 13/63 (20%), Positives = 16/63 (25%), Gaps = 2/63 (3%)
Query: 73 HRVAERYPRSSGPNLTFVFDPAGRFSYYWSMIVSLAFLYNFWVIIYRFAFQEINRESLVI 132
H +A YP P D A + + I R R S
Sbjct: 19 HTLAAYYPDM--PTPEQQQDMAQFIHIFSKFYPCEECAEDIRKRIDRSQPDTSTRVSFSQ 76
Query: 133 WFC 135
W C
Sbjct: 77 WLC 79
>d1j58a_ b.82.1.2 (A:) Oxalate decarboxylase OxdC (YvrK) {Bacillus
subtilis [TaxId: 1423]}
Length = 372
Score = 30.0 bits (67), Expect = 0.93
Identities = 11/66 (16%), Positives = 29/66 (43%), Gaps = 9/66 (13%)
Query: 579 VLKEYPAARVRLESIAVKRLQKYKRTPLEKGEVGKEMYIVN-RGRLQVVADNGKTVLATL 637
+ + + +RL+ A++ L +K E Y++ R+ +V + G++ + +
Sbjct: 68 ISENLASVNMRLKPGAIRELHWHKE-----AEW---AYMIYGSARVTIVDEKGRSFIDDV 119
Query: 638 RAGSYF 643
G +
Sbjct: 120 GEGDLW 125
>d1orsc_ f.14.1.1 (C:) Potassium channel KVAP {Archaeon Aeropyrum
pernix [TaxId: 56636]}
Length = 132
Score = 28.0 bits (62), Expect = 1.7
Identities = 14/44 (31%), Positives = 19/44 (43%)
Query: 170 RDHYMNSTTFYIDCLCLLPLDFLYLSIGFNSILRLFRLVKIYRF 213
D + L+P L L G + L LFRLV++ RF
Sbjct: 62 GDPAGYVKKTLYEIPALVPAGLLALIEGHLAGLGLFRLVRLLRF 105
>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia
coli [TaxId: 562]}
Length = 269
Score = 27.5 bits (59), Expect = 5.0
Identities = 22/190 (11%), Positives = 49/190 (25%), Gaps = 9/190 (4%)
Query: 81 RSSGPNLTFVFDPAGRFSYYWSMIVSLAFLYNFWVIIYRFAFQEINRESLVIWFCLDYMA 140
RS P ++ + P G Y + ++I A + + +
Sbjct: 36 RSPQPLMSPAWSPDGSKLAYVTF-----ESGRSALVIQTLANGAVRQVASFPRHNGAPAF 90
Query: 141 DLMYVIDILIHFRTGYLEDGVLQTDSTKLRDHYMNSTTFYIDCLCLLPLDFLYLSIGFNS 200
+TG L V+ S ++R + + + S
Sbjct: 91 SPDGSKLAFALSKTGSLNLYVMDLASGQIRQVTDGRSNNTEPTWFPDSQNLAFTSDQAGR 150
Query: 201 ILRLFRLVKIYRFWAFMDRTERHTNYPNLFRSSSLIHYLLVIFHWNGCLYHIIYKNDGFG 260
++ K+ R + SS +++++ G + G
Sbjct: 151 ----PQVYKVNINGGAPQRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGG 206
Query: 261 SRNWVYGDSD 270
+ D
Sbjct: 207 VQVLSSTFLD 216
>d2viua_ b.19.1.2 (A:) Hemagglutinin {Influenza A virus, different
strains [TaxId: 11320]}
Length = 320
Score = 27.4 bits (61), Expect = 5.8
Identities = 14/64 (21%), Positives = 27/64 (42%), Gaps = 6/64 (9%)
Query: 75 VAERYPRSSGPNLT---FVFDPAGRFSYYWSMIV---SLAFLYNFWVIIYRFAFQEINRE 128
R ++ PN+ +V + R S YW+++ L N +I R F+ +
Sbjct: 197 STRRSQQTIIPNIGSRPWVRGLSSRISIYWTIVKPGDVLVINSNGNLIAPRGYFKMRTGK 256
Query: 129 SLVI 132
S ++
Sbjct: 257 SSIM 260
>d2csoa1 a.4.5.31 (A:8-122) Pleckstrin {Human (Homo sapiens) [TaxId:
9606]}
Length = 115
Score = 26.0 bits (57), Expect = 7.8
Identities = 9/85 (10%), Positives = 22/85 (25%), Gaps = 15/85 (17%)
Query: 216 FMDRTERHTNYPNLFRSSSLIHYLLVIFHW---------------NGCLYHIIYKNDGFG 260
++ + + + F + +I +L+ G L +
Sbjct: 27 ELNLEKDKKIFNHCFTGNCVIDWLVSNQSVRNRQEGLMIASSLLNEGYLQPAGDMSKSAV 86
Query: 261 SRNWVYGDSDTTDVVKQYLQSYYWC 285
D D + S ++C
Sbjct: 87 DGTAENPFLDNPDAFYYFPDSGFFC 111
>d2nvma1 d.326.1.1 (A:2-118) XisI {Anabaena variabilis [TaxId:
1172]}
Length = 117
Score = 26.0 bits (57), Expect = 8.7
Identities = 7/39 (17%), Positives = 14/39 (35%), Gaps = 10/39 (25%)
Query: 237 HYLLVIFHWN------GCLYHIIYKNDGFGSRNWVYGDS 269
YL + W+ + ++ +N W+ DS
Sbjct: 53 QYLWLCCGWDGKKRVQHIILYLQIQNGKI----WIEEDS 87
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.324 0.138 0.424
Gapped
Lambda K H
0.267 0.0440 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 2,566,939
Number of extensions: 122029
Number of successful extensions: 411
Number of sequences better than 10.0: 1
Number of HSP's gapped: 397
Number of HSP's successfully gapped: 43
Length of query: 679
Length of database: 2,407,596
Length adjustment: 91
Effective length of query: 588
Effective length of database: 1,158,166
Effective search space: 681001608
Effective search space used: 681001608
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 56 (26.1 bits)