BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy15121
(960 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P09523|POL_FMVD Enzymatic polyprotein OS=Figwort mosaic virus (strain DxS) GN=ORF V
PE=3 SV=1
Length = 666
Score = 65.5 bits (158), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 68/343 (19%), Positives = 129/343 (37%), Gaps = 66/343 (19%)
Query: 608 GTMRPVFNLKSLNSYVTTKKFKLINHQKIPLFLQKNDYLATIDLSQAYCHIPIARRHRRF 667
G R V N K++N L N Q++ L+ ++ D + + + ++
Sbjct: 291 GKKRMVVNYKAINQATIGDSHNLPNMQELLTLLRGKSIFSSFDCKSGFWQVVLDEESQKL 350
Query: 668 LCFLIPMDMSSFRPSLSSPGVCPTI---KLGRRLRERGVRCLVYLDDFLLASQDPIVLKN 724
F P ++ P+I + L C+VY+DD ++ S + N
Sbjct: 351 TAFTCPQGHFQWKVVPFGLKQAPSIFQRHMQTALNGADKFCMVYVDDIIVFSNSELDHYN 410
Query: 725 QILQTLQLLTYLGWQVNLKKSQIIPSHRVDYLGISWDTD--------------------- 763
+ L+++ G ++ KK+ + ++++LG+ D
Sbjct: 411 HVYAVLKIVEKYGIILSKKKANLF-KEKINFLGLEIDKGTHCPQNHILENIHKFPDRLED 469
Query: 764 ----------LLQVRLPVDKIPPLRDRLQTQALIELKWFY------------HNLTGFTP 801
L + K+ +R LQ + ++ W + NL F
Sbjct: 470 KKHLQRFLGVLTYAETYIPKLAEIRKPLQVKLKKDVTWNWTQSDSDYVKKIKKNLGSFPK 529
Query: 802 LHPPVPRT--FMSTDASDVGWGAMVGNVSVQGV----------WTQAQRSWHINLKELFT 849
L+ P P + TDASD WG ++ ++ GV + QA++++H N KEL
Sbjct: 530 LYLPKPEDHLIIETDASDSFWGGVLKARALDGVELICRYSSGSFKQAEKNYHSNDKELLA 589
Query: 850 VRAAISSNPSLVANHTVVLQSDNKTVIAYIR-------KQGGL 885
V+ I+ + + +++DNK ++R KQG L
Sbjct: 590 VKQVITKFSAYLTPVRFTVRTDNKNFTYFLRINLKGDSKQGRL 632
Score = 48.1 bits (113), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 32/110 (29%), Positives = 52/110 (47%), Gaps = 19/110 (17%)
Query: 49 NLTGFTPLHPPVPRT--FMSTDASDVGWGAMVGNVSVQGV----------WTQAQRSWHI 96
NL F L+ P P + TDASD WG ++ ++ GV + QA++++H
Sbjct: 523 NLGSFPKLYLPKPEDHLIIETDASDSFWGGVLKARALDGVELICRYSSGSFKQAEKNYHS 582
Query: 97 NLKELFTVRAAISSNPSLVANHTVVLQSDNKTVIAYIR-------KQGGL 139
N KEL V+ I+ + + +++DNK ++R KQG L
Sbjct: 583 NDKELLAVKQVITKFSAYLTPVRFTVRTDNKNFTYFLRINLKGDSKQGRL 632
Score = 38.5 bits (88), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 25/127 (19%), Positives = 51/127 (40%), Gaps = 3/127 (2%)
Query: 318 IMFNLKSLNSYVTTKKFKLINHQKIPLFLQKNDYLATIDLSQAYCHIPIARRHRRFLCFL 377
++ N K++N L N Q++ L+ ++ D + + + ++ F
Sbjct: 295 MVVNYKAINQATIGDSHNLPNMQELLTLLRGKSIFSSFDCKSGFWQVVLDEESQKLTAFT 354
Query: 378 YKGTVYQRTCLSFGLASAPQAFAQLSNWVAVLLRERGVRCLVYLDDFLLASQDSVVLKNQ 437
+Q + FGL AP F + + L C+VY+DD ++ S + N
Sbjct: 355 CPQGHFQWKVVPFGLKQAPSIFQR---HMQTALNGADKFCMVYVDDIIVFSNSELDHYNH 411
Query: 438 IFQTLPV 444
++ L +
Sbjct: 412 VYAVLKI 418
>sp|Q00962|POL_CAMVN Enzymatic polyprotein OS=Cauliflower mosaic virus (strain NY8153)
GN=ORF V PE=3 SV=1
Length = 680
Score = 57.0 bits (136), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 86/390 (22%), Positives = 145/390 (37%), Gaps = 68/390 (17%)
Query: 599 NDAQGLYGDGTMRPVFNLKSLNSYVTTKKFKLINHQKIPLFLQKNDYLATIDLSQAYCHI 658
N+A+ G G R V N K++N + L N ++ ++ ++ D + +
Sbjct: 292 NEAEN--GRGNKRMVVNYKAMNKATVGDAYNLPNKDELLTLIRGKKIFSSFDCKSGFWQV 349
Query: 659 PIARRHRRFLCFLIPMDMSSFRPSLSSPGVCPTIKLGRRLRE--RGVR--CLVYLDDFLL 714
+ + R F P + P+I R + E R R C VY+DD ++
Sbjct: 350 LLDQESRPLTAFTCPQGHYEWNVVPFGLKQAPSI-FQRHMDEAFRVFRKFCCVYVDDIVV 408
Query: 715 AS---QDPIVLKNQILQTLQ----------------LLTYLGWQVNL---KKSQIIPSHR 752
S +D ++ ILQ + +LG +++ K I H
Sbjct: 409 FSNNEEDHLLHVAMILQKCNQHGIILSKKKAQLFKKKINFLGLEIDEGTHKPQGHILEHI 468
Query: 753 VDYLGISWDTDLLQVRLPV-----DKIPPL---RDRLQTQALIELKWFY----------- 793
+ D LQ L + D IP L R LQ + + W +
Sbjct: 469 NKFPDTLEDKKQLQRFLGILTYASDYIPNLAQMRQPLQAKLKENVPWKWTKEDTLYMQKV 528
Query: 794 -HNLTGFTPLHPPVP--RTFMSTDASDVGWGAMVGNVSVQ-------------GVWTQAQ 837
NL GF PLH P+P + + TDASD WG M+ + + G + A+
Sbjct: 529 KKNLQGFPPLHHPLPEEKLIIETDASDDYWGGMLKAIKINEGTNTELICRYRSGSFKAAE 588
Query: 838 RSWHINLKELFTVRAAISSNPSLVANHTVVLQSDNKTVIAYIRKQGGLRSHALLAETKKL 897
R++H N KE V I + ++++DN +++ + + L +
Sbjct: 589 RNYHSNDKETLAVINTIKKFSIYLTPVHFLIRTDNTHFKSFV--NLNYKGDSKLGRNIRW 646
Query: 898 LLIMSKLNIHIVPYFIPGKCNSLADALSRQ 927
+S + + I G N AD LSR+
Sbjct: 647 QAWLSHYSFDV--EHIKGTDNHFADFLSRE 674
Score = 47.8 bits (112), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 38/148 (25%), Positives = 63/148 (42%), Gaps = 19/148 (12%)
Query: 49 NLTGFTPLHPPVP--RTFMSTDASDVGWGAMVGNVSVQ-------------GVWTQAQRS 93
NL GF PLH P+P + + TDASD WG M+ + + G + A+R+
Sbjct: 531 NLQGFPPLHHPLPEEKLIIETDASDDYWGGMLKAIKINEGTNTELICRYRSGSFKAAERN 590
Query: 94 WHINLKELFTVRAAISSNPSLVANHTVVLQSDNKTVIAYIRKQGGLRSHALLAETKKLLL 153
+H N KE V I + ++++DN +++ + + L +
Sbjct: 591 YHSNDKETLAVINTIKKFSIYLTPVHFLIRTDNTHFKSFV--NLNYKGDSKLGRNIRWQA 648
Query: 154 IMSKLNIHIVPYFIPGKCNSLADALSRQ 181
+S + + I G N AD LSR+
Sbjct: 649 WLSHYSFDV--EHIKGTDNHFADFLSRE 674
Score = 37.4 bits (85), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 25/127 (19%), Positives = 51/127 (40%), Gaps = 6/127 (4%)
Query: 308 IGNLANTGLS---IMFNLKSLNSYVTTKKFKLINHQKIPLFLQKNDYLATIDLSQAYCHI 364
+ N A G ++ N K++N + L N ++ ++ ++ D + +
Sbjct: 290 VNNEAENGRGNKRMVVNYKAMNKATVGDAYNLPNKDELLTLIRGKKIFSSFDCKSGFWQV 349
Query: 365 PIARRHRRFLCFLYKGTVYQRTCLSFGLASAPQAFAQLSNWVAVLLRERGVRCLVYLDDF 424
+ + R F Y+ + FGL AP F + + + R+ C VY+DD
Sbjct: 350 LLDQESRPLTAFTCPQGHYEWNVVPFGLKQAPSIFQRHMDEAFRVFRK---FCCVYVDDI 406
Query: 425 LLASQDS 431
++ S +
Sbjct: 407 VVFSNNE 413
>sp|P03555|POL_CAMVC Enzymatic polyprotein OS=Cauliflower mosaic virus (strain CM-1841)
GN=ORF V PE=3 SV=1
Length = 679
Score = 55.1 bits (131), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 84/381 (22%), Positives = 140/381 (36%), Gaps = 66/381 (17%)
Query: 608 GTMRPVFNLKSLNSYVTTKKFKLINHQKIPLFLQKNDYLATIDLSQAYCHIPIARRHRRF 667
G R V N K++N + L N ++ ++ ++ D + + + + R
Sbjct: 298 GKKRMVVNYKAMNKATIGDAYNLPNKDELLTLIRGKKIFSSFDCKSGFWQVLLDQESRPL 357
Query: 668 LCFLIPMDMSSFRPSLSSPGVCPTIKLGRRLRE--RGVR--CLVYLDDFLLAS---QDPI 720
F P + P+I R + E R R C VY+DD L+ S +D +
Sbjct: 358 TAFTCPQGHYEWNVVPFGLKQAPSI-FQRHMDEAFRVFRKFCCVYVDDILVFSNNEEDHL 416
Query: 721 VLKNQILQTLQ----------------LLTYLGWQVNL---KKSQIIPSHRVDYLGISWD 761
+ ILQ + +LG +++ K I H + D
Sbjct: 417 LHVAMILQKCNQHGIILSKKKAQLFKKKINFLGLEIDEGTHKPQGHILEHINKFPDTLED 476
Query: 762 TDLLQVRLPV-----DKIPPL---RDRLQTQALIELKWFY------------HNLTGFTP 801
LQ L + D IP L R LQ + + W + NL GF P
Sbjct: 477 KKQLQRFLGILTYASDYIPKLAQIRKPLQAKLKENVPWKWTKEDTLYMQKVKKNLQGFPP 536
Query: 802 LHPPVP--RTFMSTDASDVGWGAMVGNVSVQ-------------GVWTQAQRSWHINLKE 846
LH P+P + + TDASD WG M+ + + G + A+R++H N KE
Sbjct: 537 LHHPLPEEKLIIETDASDDYWGGMLKAIKINEGTNTELICRYASGSFKAAERNYHSNDKE 596
Query: 847 LFTVRAAISSNPSLVANHTVVLQSDNKTVIAYIRKQGGLRSHALLAETKKLLLIMSKLNI 906
V I + ++++DN +++ + + L + +S +
Sbjct: 597 TLAVINTIKKFSIYLTPVHFLIRTDNTHFKSFV--NLNYKGDSKLGRNIRWQAWLSHYSF 654
Query: 907 HIVPYFIPGKCNSLADALSRQ 927
+ I G N AD LSR+
Sbjct: 655 DV--EHIKGTDNHFADFLSRE 673
Score = 47.8 bits (112), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 38/148 (25%), Positives = 63/148 (42%), Gaps = 19/148 (12%)
Query: 49 NLTGFTPLHPPVP--RTFMSTDASDVGWGAMVGNVSVQ-------------GVWTQAQRS 93
NL GF PLH P+P + + TDASD WG M+ + + G + A+R+
Sbjct: 530 NLQGFPPLHHPLPEEKLIIETDASDDYWGGMLKAIKINEGTNTELICRYASGSFKAAERN 589
Query: 94 WHINLKELFTVRAAISSNPSLVANHTVVLQSDNKTVIAYIRKQGGLRSHALLAETKKLLL 153
+H N KE V I + ++++DN +++ + + L +
Sbjct: 590 YHSNDKETLAVINTIKKFSIYLTPVHFLIRTDNTHFKSFV--NLNYKGDSKLGRNIRWQA 647
Query: 154 IMSKLNIHIVPYFIPGKCNSLADALSRQ 181
+S + + I G N AD LSR+
Sbjct: 648 WLSHYSFDV--EHIKGTDNHFADFLSRE 673
Score = 37.4 bits (85), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 23/114 (20%), Positives = 47/114 (41%), Gaps = 3/114 (2%)
Query: 318 IMFNLKSLNSYVTTKKFKLINHQKIPLFLQKNDYLATIDLSQAYCHIPIARRHRRFLCFL 377
++ N K++N + L N ++ ++ ++ D + + + + R F
Sbjct: 302 MVVNYKAMNKATIGDAYNLPNKDELLTLIRGKKIFSSFDCKSGFWQVLLDQESRPLTAFT 361
Query: 378 YKGTVYQRTCLSFGLASAPQAFAQLSNWVAVLLRERGVRCLVYLDDFLLASQDS 431
Y+ + FGL AP F + + + R+ C VY+DD L+ S +
Sbjct: 362 CPQGHYEWNVVPFGLKQAPSIFQRHMDEAFRVFRK---FCCVYVDDILVFSNNE 412
>sp|Q02964|POL_CAMVE Enzymatic polyprotein OS=Cauliflower mosaic virus (strain BBC)
GN=ORF V PE=3 SV=1
Length = 679
Score = 55.1 bits (131), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 84/381 (22%), Positives = 140/381 (36%), Gaps = 66/381 (17%)
Query: 608 GTMRPVFNLKSLNSYVTTKKFKLINHQKIPLFLQKNDYLATIDLSQAYCHIPIARRHRRF 667
G R V N K++N + L N ++ ++ ++ D + + + + R
Sbjct: 298 GKKRMVVNYKAMNKATIGDAYNLPNKDELLTLIRGKKIFSSFDCKSGFWQVLLDQESRPL 357
Query: 668 LCFLIPMDMSSFRPSLSSPGVCPTIKLGRRLRE--RGVR--CLVYLDDFLLAS---QDPI 720
F P + P+I R + E R R C VY+DD L+ S +D +
Sbjct: 358 TAFTCPQGHYEWNVVPFGLKQAPSI-FQRHMDEAFRVFRKFCCVYVDDILVFSNNEEDHL 416
Query: 721 VLKNQILQTLQ----------------LLTYLGWQVNL---KKSQIIPSHRVDYLGISWD 761
+ ILQ + +LG +++ K I H + D
Sbjct: 417 LHVAMILQKCNQHGIILSKKKAQLFKKKINFLGLEIDEGTHKPQGHILEHINKFPDTLED 476
Query: 762 TDLLQVRLPV-----DKIPPL---RDRLQTQALIELKWFY------------HNLTGFTP 801
LQ L + D IP L R LQ + + W + NL GF P
Sbjct: 477 KKQLQRFLGILTYASDYIPKLAQIRKPLQAKLKENVPWKWTKEDTLYMQKVKKNLQGFPP 536
Query: 802 LHPPVP--RTFMSTDASDVGWGAMVGNVSVQ-------------GVWTQAQRSWHINLKE 846
LH P+P + + TDASD WG M+ + + G + A+R++H N KE
Sbjct: 537 LHHPLPEEKLIIETDASDDYWGGMLKAIKINEGTNTELICRYASGSFKAAERNYHSNDKE 596
Query: 847 LFTVRAAISSNPSLVANHTVVLQSDNKTVIAYIRKQGGLRSHALLAETKKLLLIMSKLNI 906
V I + ++++DN +++ + + L + +S +
Sbjct: 597 TLAVINTIKKFSIYLTPVHFLIRTDNTHFKSFV--NLNYKGDSKLGRNIRWQAWLSHYSF 654
Query: 907 HIVPYFIPGKCNSLADALSRQ 927
+ I G N AD LSR+
Sbjct: 655 DV--EHIKGTDNHFADFLSRE 673
Score = 47.8 bits (112), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 38/148 (25%), Positives = 63/148 (42%), Gaps = 19/148 (12%)
Query: 49 NLTGFTPLHPPVP--RTFMSTDASDVGWGAMVGNVSVQ-------------GVWTQAQRS 93
NL GF PLH P+P + + TDASD WG M+ + + G + A+R+
Sbjct: 530 NLQGFPPLHHPLPEEKLIIETDASDDYWGGMLKAIKINEGTNTELICRYASGSFKAAERN 589
Query: 94 WHINLKELFTVRAAISSNPSLVANHTVVLQSDNKTVIAYIRKQGGLRSHALLAETKKLLL 153
+H N KE V I + ++++DN +++ + + L +
Sbjct: 590 YHSNDKETLAVINTIKKFSIYLTPVHFLIRTDNTHFKSFV--NLNYKGDSKLGRNIRWQA 647
Query: 154 IMSKLNIHIVPYFIPGKCNSLADALSRQ 181
+S + + I G N AD LSR+
Sbjct: 648 WLSHYSFDV--EHIKGTDNHFADFLSRE 673
Score = 37.4 bits (85), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 23/114 (20%), Positives = 47/114 (41%), Gaps = 3/114 (2%)
Query: 318 IMFNLKSLNSYVTTKKFKLINHQKIPLFLQKNDYLATIDLSQAYCHIPIARRHRRFLCFL 377
++ N K++N + L N ++ ++ ++ D + + + + R F
Sbjct: 302 MVVNYKAMNKATIGDAYNLPNKDELLTLIRGKKIFSSFDCKSGFWQVLLDQESRPLTAFT 361
Query: 378 YKGTVYQRTCLSFGLASAPQAFAQLSNWVAVLLRERGVRCLVYLDDFLLASQDS 431
Y+ + FGL AP F + + + R+ C VY+DD L+ S +
Sbjct: 362 CPQGHYEWNVVPFGLKQAPSIFQRHMDEAFRVFRK---FCCVYVDDILVFSNNE 412
>sp|P03554|POL_CAMVS Enzymatic polyprotein OS=Cauliflower mosaic virus (strain
Strasbourg) GN=ORF V PE=3 SV=1
Length = 679
Score = 53.9 bits (128), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 83/381 (21%), Positives = 140/381 (36%), Gaps = 66/381 (17%)
Query: 608 GTMRPVFNLKSLNSYVTTKKFKLINHQKIPLFLQKNDYLATIDLSQAYCHIPIARRHRRF 667
G R V N K++N + L N ++ ++ ++ D + + + + R
Sbjct: 298 GKKRMVVNYKAMNKATVGDAYNLPNKDELLTLIRGKKIFSSFDCKSGFWQVLLDQESRPL 357
Query: 668 LCFLIPMDMSSFRPSLSSPGVCPTIKLGRRLRE--RGVR--CLVYLDDFLLAS---QDPI 720
F P + P+I R + E R R C VY+DD L+ S +D +
Sbjct: 358 TAFTCPQGHYEWNVVPFGLKQAPSI-FQRHMDEAFRVFRKFCCVYVDDILVFSNNEEDHL 416
Query: 721 VLKNQILQTLQ----------------LLTYLGWQVNL---KKSQIIPSHRVDYLGISWD 761
+ ILQ + +LG +++ K I H + D
Sbjct: 417 LHVAMILQKCNQHGIILSKKKAQLFKKKINFLGLEIDEGTHKPQGHILEHINKFPDTLED 476
Query: 762 TDLLQVRLPV-----DKIPPL---RDRLQTQALIELKWFY------------HNLTGFTP 801
LQ L + D IP L R LQ + + W + NL GF P
Sbjct: 477 KKQLQRFLGILTYASDYIPKLAQIRKPLQAKLKENVPWRWTKEDTLYMQKVKKNLQGFPP 536
Query: 802 LHPPVP--RTFMSTDASDVGWGAMVGNVSVQ-------------GVWTQAQRSWHINLKE 846
LH P+P + + TDASD WG M+ + + G + A++++H N KE
Sbjct: 537 LHHPLPEEKLIIETDASDDYWGGMLKAIKINEGTNTELICRYASGSFKAAEKNYHSNDKE 596
Query: 847 LFTVRAAISSNPSLVANHTVVLQSDNKTVIAYIRKQGGLRSHALLAETKKLLLIMSKLNI 906
V I + ++++DN +++ + + L + +S +
Sbjct: 597 TLAVINTIKKFSIYLTPVHFLIRTDNTHFKSFV--NLNYKGDSKLGRNIRWQAWLSHYSF 654
Query: 907 HIVPYFIPGKCNSLADALSRQ 927
+ I G N AD LSR+
Sbjct: 655 DV--EHIKGTDNHFADFLSRE 673
Score = 46.2 bits (108), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 37/148 (25%), Positives = 63/148 (42%), Gaps = 19/148 (12%)
Query: 49 NLTGFTPLHPPVP--RTFMSTDASDVGWGAMVGNVSVQ-------------GVWTQAQRS 93
NL GF PLH P+P + + TDASD WG M+ + + G + A+++
Sbjct: 530 NLQGFPPLHHPLPEEKLIIETDASDDYWGGMLKAIKINEGTNTELICRYASGSFKAAEKN 589
Query: 94 WHINLKELFTVRAAISSNPSLVANHTVVLQSDNKTVIAYIRKQGGLRSHALLAETKKLLL 153
+H N KE V I + ++++DN +++ + + L +
Sbjct: 590 YHSNDKETLAVINTIKKFSIYLTPVHFLIRTDNTHFKSFV--NLNYKGDSKLGRNIRWQA 647
Query: 154 IMSKLNIHIVPYFIPGKCNSLADALSRQ 181
+S + + I G N AD LSR+
Sbjct: 648 WLSHYSFDV--EHIKGTDNHFADFLSRE 673
Score = 37.7 bits (86), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 23/114 (20%), Positives = 47/114 (41%), Gaps = 3/114 (2%)
Query: 318 IMFNLKSLNSYVTTKKFKLINHQKIPLFLQKNDYLATIDLSQAYCHIPIARRHRRFLCFL 377
++ N K++N + L N ++ ++ ++ D + + + + R F
Sbjct: 302 MVVNYKAMNKATVGDAYNLPNKDELLTLIRGKKIFSSFDCKSGFWQVLLDQESRPLTAFT 361
Query: 378 YKGTVYQRTCLSFGLASAPQAFAQLSNWVAVLLRERGVRCLVYLDDFLLASQDS 431
Y+ + FGL AP F + + + R+ C VY+DD L+ S +
Sbjct: 362 CPQGHYEWNVVPFGLKQAPSIFQRHMDEAFRVFRK---FCCVYVDDILVFSNNE 412
>sp|P03556|POL_CAMVD Enzymatic polyprotein OS=Cauliflower mosaic virus (strain D/H)
GN=ORF V PE=3 SV=1
Length = 674
Score = 51.6 bits (122), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 82/381 (21%), Positives = 139/381 (36%), Gaps = 66/381 (17%)
Query: 608 GTMRPVFNLKSLNSYVTTKKFKLINHQKIPLFLQKNDYLATIDLSQAYCHIPIARRHRRF 667
G R V N K++N + N ++ ++ ++ D + + + + R
Sbjct: 293 GKKRMVVNYKAMNKATVGDAYNPPNKDELLTLIRGKKIFSSFDCKSGFWQVLLDQESRPL 352
Query: 668 LCFLIPMDMSSFRPSLSSPGVCPTIKLGRRLRE--RGVR--CLVYLDDFLLAS---QDPI 720
F P + P+I R + E R R C VY+DD L+ S +D +
Sbjct: 353 TAFTCPQGHYEWNVVPFGLKQAPSI-FQRHMDEAFRVFRKFCCVYVDDILVFSNNEEDHL 411
Query: 721 VLKNQILQTLQ----------------LLTYLGWQVNL---KKSQIIPSHRVDYLGISWD 761
+ ILQ + +LG +++ K I H + D
Sbjct: 412 LHVAMILQKCNQHGIILSKKKAQLFKKKINFLGLEIDEGTHKPQGHILEHINKFPDTLED 471
Query: 762 TDLLQVRLPV-----DKIPPL---RDRLQTQALIELKWFY------------HNLTGFTP 801
LQ L + D IP L R LQ + + W + NL GF P
Sbjct: 472 KKQLQRFLGILTYASDYIPKLAQIRKPLQAKLKENVPWKWTKEDTLYMQKVKKNLQGFPP 531
Query: 802 LHPPVP--RTFMSTDASDVGWGAMVGNVSVQ-------------GVWTQAQRSWHINLKE 846
LH P+P + + TDASD WG M+ + + G + A++++H N KE
Sbjct: 532 LHHPLPEEKLIIETDASDDYWGGMLKAIKINEGTNTELICRYASGSFKAAEKNYHSNDKE 591
Query: 847 LFTVRAAISSNPSLVANHTVVLQSDNKTVIAYIRKQGGLRSHALLAETKKLLLIMSKLNI 906
V I + ++++DN +++ + + L + +S +
Sbjct: 592 TLAVINTIKKFSIYLTPVHFLIRTDNTHFKSFV--NLNYKGDSKLGRNIRWQAWLSHYSF 649
Query: 907 HIVPYFIPGKCNSLADALSRQ 927
+ I G N AD LSR+
Sbjct: 650 DV--EHIKGTDNHFADFLSRE 668
Score = 46.6 bits (109), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 37/148 (25%), Positives = 63/148 (42%), Gaps = 19/148 (12%)
Query: 49 NLTGFTPLHPPVP--RTFMSTDASDVGWGAMVGNVSVQ-------------GVWTQAQRS 93
NL GF PLH P+P + + TDASD WG M+ + + G + A+++
Sbjct: 525 NLQGFPPLHHPLPEEKLIIETDASDDYWGGMLKAIKINEGTNTELICRYASGSFKAAEKN 584
Query: 94 WHINLKELFTVRAAISSNPSLVANHTVVLQSDNKTVIAYIRKQGGLRSHALLAETKKLLL 153
+H N KE V I + ++++DN +++ + + L +
Sbjct: 585 YHSNDKETLAVINTIKKFSIYLTPVHFLIRTDNTHFKSFV--NLNYKGDSKLGRNIRWQA 642
Query: 154 IMSKLNIHIVPYFIPGKCNSLADALSRQ 181
+S + + I G N AD LSR+
Sbjct: 643 WLSHYSFDV--EHIKGTDNHFADFLSRE 668
>sp|P05400|POL_CERV Enzymatic polyprotein OS=Carnation etched ring virus GN=ORF V PE=3
SV=1
Length = 659
Score = 50.4 bits (119), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 72/346 (20%), Positives = 125/346 (36%), Gaps = 71/346 (20%)
Query: 608 GTMRPVFNLKSLNSYVTTKKFKLINHQKIPLFLQKNDYLATIDLSQAYCHIPIARRHRRF 667
G R V N K++N L N ++ ++ ++ D + + + +
Sbjct: 280 GKKRMVVNYKAMNKATKGDAHNLPNKDELLTLVRGKKIYSSFDCKSGLWQVLLDKESQLL 339
Query: 668 LCFLIPMDMSSFRPS----LSSPGVCPTIKLGRRLRERGVRCLVYLDDFLLASQDPIVLK 723
F P + +P + P + C VY+DD L+ S K
Sbjct: 340 TAFTCPQGHYQWNVVPFGLKQAPSIFPKTYANSHSNQYSKYCCVYVDDILVFSNTG--RK 397
Query: 724 NQILQTLQLL---TYLGWQVNLKKSQIIPSHRVDYLGIS--------------------- 759
+ L +L LG ++ KK+Q+ ++++LG+
Sbjct: 398 EHYIHVLNILRRCEKLGIILSKKKAQLF-KEKINFLGLEIDQGTHCPQNHILEHIHKFPD 456
Query: 760 --WDTDLLQVRLPV-----DKIPPL---RDRLQTQALIELKWFYH------------NLT 797
D LQ L + D IP L R LQ++ + W ++ NL
Sbjct: 457 RIEDKKQLQRFLGILTYASDYIPKLASIRKPLQSKLKEDSTWTWNDTDSQYMAKIKKNLK 516
Query: 798 GFTPLHPPVP--RTFMSTDASDVGWGAMVGNVS---------VQGVWTQAQRSWHINLKE 846
F L+ P P + + TDAS+ WG ++ + G + A+R++H N KE
Sbjct: 517 SFPKLYHPEPNDKLVIETDASEEFWGGILKAIHNSHEYICRYASGSFKAAERNYHSNEKE 576
Query: 847 LFTVRAAISSNPSLVANHTVVLQSDNKTVIAYI-------RKQGGL 885
L V I + ++++DNK ++ RKQG L
Sbjct: 577 LLAVIRVIKKFSIYLTPSRFLIRTDNKNFTHFVNINLKGDRKQGRL 622
Score = 43.1 bits (100), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 30/109 (27%), Positives = 48/109 (44%), Gaps = 18/109 (16%)
Query: 49 NLTGFTPLHPPVP--RTFMSTDASDVGWGAMVGNVS---------VQGVWTQAQRSWHIN 97
NL F L+ P P + + TDAS+ WG ++ + G + A+R++H N
Sbjct: 514 NLKSFPKLYHPEPNDKLVIETDASEEFWGGILKAIHNSHEYICRYASGSFKAAERNYHSN 573
Query: 98 LKELFTVRAAISSNPSLVANHTVVLQSDNKTVIAYI-------RKQGGL 139
KEL V I + ++++DNK ++ RKQG L
Sbjct: 574 EKELLAVIRVIKKFSIYLTPSRFLIRTDNKNFTHFVNINLKGDRKQGRL 622
>sp|Q02836|POL_SIVG1 Gag-Pol polyprotein OS=Simian immunodeficiency virus agm.grivet
(isolate AGM gr-1) GN=gag-pol PE=3 SV=2
Length = 1472
Score = 48.9 bits (115), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 33/107 (30%), Positives = 44/107 (41%), Gaps = 15/107 (14%)
Query: 343 PLFLQKNDYLATIDLSQAYCHIPIARRHRRFLCFLY-------KGTVYQRTCLSFGLASA 395
P LQK + ID+ AY IP+ + R++ F G YQ CL G +
Sbjct: 706 PAGLQKKKQITVIDIGDAYYSIPLCKEFRKYTAFTIPSVNNTGPGIRYQFNCLPQGWKGS 765
Query: 396 PQAFAQLSNWVAVLLRE-----RGVRCLVYLDDFLLASQDSVVLKNQ 437
P F N A +L E G+ + Y+DD LAS NQ
Sbjct: 766 PTIF---QNTAANILEEIKRHTPGLEIVQYMDDLWLASDHDETRHNQ 809
Score = 38.5 bits (88), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 35/130 (26%), Positives = 54/130 (41%), Gaps = 18/130 (13%)
Query: 637 PLFLQKNDYLATIDLSQAYCHIPIARRHRRFLCFLIPMDMSSFRPSLSSPGVC------- 689
P LQK + ID+ AY IP+ + R++ F IP +++ P + C
Sbjct: 706 PAGLQKKKQITVIDIGDAYYSIPLCKEFRKYTAFTIP-SVNNTGPGIRYQFNCLPQGWKG 764
Query: 690 -PTI--KLGRRLRER------GVRCLVYLDDFLLASQDPIVLKNQILQTL-QLLTYLGWQ 739
PTI + E G+ + Y+DD LAS NQ + + ++L G +
Sbjct: 765 SPTIFQNTAANILEEIKRHTPGLEIVQYMDDLWLASDHDETRHNQQVDIVRKMLLEKGLE 824
Query: 740 VNLKKSQIIP 749
KK Q P
Sbjct: 825 TPDKKVQREP 834
>sp|Q89703|POL_CSVMV Putative enzymatic polyprotein OS=Cassava vein mosaic virus GN=ORF
3 PE=3 SV=1
Length = 652
Score = 47.4 bits (111), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 74/386 (19%), Positives = 143/386 (37%), Gaps = 74/386 (19%)
Query: 608 GTMRPVFNLKSLNSYVTTKKFKLINHQKIPLFLQKNDYLATIDLSQAYCHIPIARRHRRF 667
G R V + K LN K+ + N + + Y + D + HI + +++
Sbjct: 259 GKTRMVIDYKDLNKKAKVVKYPIPNKDTLIHRSIQARYYSKFDCKSGFYHIKLEEDSKKY 318
Query: 668 LCFLIPMDMSSFR----PSLSSPGVCPTIKLGRRLRERGVRCLVYLDDFLLASQDPIVLK 723
F +P ++ +SP + + R R +VY+DD L+ S+ K
Sbjct: 319 TAFTVPQGYYQWKVLPFGYHNSPSIFQQF-MDRIFRPYYDFIIVYIDDILVFSKTIEEHK 377
Query: 724 NQILQTLQLLTYLGWQVNLKKSQIIPSHRVDYLGISWDT--------------------- 762
I + + G ++ KK+++ ++D+LG+ +
Sbjct: 378 IHIAKFRDITLANGLIISKKKTELC-KEKIDFLGVQIEQGGIELQPHIINKILEKHTKIK 436
Query: 763 --------------------DLLQVRLPVDKIPPLRD-------RLQTQALIELKWFYHN 795
L Q+ LP+ K ++D + + + ++ + N
Sbjct: 437 NKTELQSILGLLNQIRHFIPHLAQILLPIQKKLKIKDEEIWTWTKEDEEKIKLIQDYSKN 496
Query: 796 LTGFTPLHPPVPRTFMS----TDASDVGWGAMVG----NVSVQ-------GVWTQAQRSW 840
L + P+ + M+ DAS+ +G+ + N ++ G + + ++ +
Sbjct: 497 LV--IKMKYPINKEDMNWIIEVDASNNAYGSCLKYKPKNSKIEYLCRYNSGTFKENEQKY 554
Query: 841 HINLKELFTVRAAISSNPSLVANHTVVLQSDNKTVIAYIRKQGGLRSHALLAETKKLLLI 900
IN KEL V + S ++++DN V +I+ +S K LL
Sbjct: 555 DINRKELIAVYQGLQSYSLFTCEGNKLVRTDNSQVYYWIKNDTNKKS-IEFRNIKYLLAK 613
Query: 901 MSKLNIHIVPYFIPGKCNSLADALSR 926
++ N I I GK N +AD LSR
Sbjct: 614 IAVYNFEIQ--LIDGKTNIIADYLSR 637
Score = 38.9 bits (89), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 20/79 (25%), Positives = 34/79 (43%), Gaps = 3/79 (3%)
Query: 351 YLATIDLSQAYCHIPIARRHRRFLCFLYKGTVYQRTCLSFGLASAPQAFAQLSNWVAVLL 410
Y + D + HI + +++ F YQ L FG ++P F Q + +
Sbjct: 296 YYSKFDCKSGFYHIKLEEDSKKYTAFTVPQGYYQWKVLPFGYHNSPSIFQQFMDRI---F 352
Query: 411 RERGVRCLVYLDDFLLASQ 429
R +VY+DD L+ S+
Sbjct: 353 RPYYDFIIVYIDDILVFSK 371
Score = 38.1 bits (87), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 32/127 (25%), Positives = 55/127 (43%), Gaps = 14/127 (11%)
Query: 65 MSTDASDVGWGAMVG----NVSVQ-------GVWTQAQRSWHINLKELFTVRAAISSNPS 113
+ DAS+ +G+ + N ++ G + + ++ + IN KEL V + S
Sbjct: 514 IEVDASNNAYGSCLKYKPKNSKIEYLCRYNSGTFKENEQKYDINRKELIAVYQGLQSYSL 573
Query: 114 LVANHTVVLQSDNKTVIAYIRKQGGLRSHALLAETKKLLLIMSKLNIHIVPYFIPGKCNS 173
++++DN V +I+ +S K LL ++ N I I GK N
Sbjct: 574 FTCEGNKLVRTDNSQVYYWIKNDTNKKS-IEFRNIKYLLAKIAVYNFEIQ--LIDGKTNI 630
Query: 174 LADALSR 180
+AD LSR
Sbjct: 631 IADYLSR 637
>sp|P20825|POL2_DROME Retrovirus-related Pol polyprotein from transposon 297
OS=Drosophila melanogaster GN=pol PE=4 SV=1
Length = 1059
Score = 46.6 bits (109), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 32/112 (28%), Positives = 54/112 (48%), Gaps = 4/112 (3%)
Query: 318 IMFNLKSLNSYVTTKKFKLINHQKIPLFLQKNDYLATIDLSQAYCHIPIARRHRRFLCFL 377
++ + + LN ++ + N +I L K Y TIDL++ + I + F
Sbjct: 263 VVIDYRKLNEITIPDRYPIPNMDEILGKLGKCQYFTTIDLAKGFHQIEMDEESISKTAFS 322
Query: 378 YKGTVYQRTCLSFGLASAPQAFAQ-LSNWVAVLLRERGVRCLVYLDDFLLAS 428
K Y+ + FGL +AP F + ++N + LL + CLVYLDD ++ S
Sbjct: 323 TKSGHYEYLRMPFGLRNAPATFQRCMNNILRPLLNK---HCLVYLDDIIIFS 371
>sp|P10401|POLY_DROME Retrovirus-related Pol polyprotein from transposon gypsy
OS=Drosophila melanogaster GN=pol PE=4 SV=1
Length = 1035
Score = 45.8 bits (107), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/122 (27%), Positives = 54/122 (44%), Gaps = 4/122 (3%)
Query: 311 LANTGLSIMFNLKSLNSYVTTKKFKLINHQKIPLFLQKNDYLATIDLSQAYCHIPIARRH 370
N ++ + + LN ++ + + I L K + T+DL Y I +A
Sbjct: 232 FGNPNKRLVIDFRKLNEKTIPDRYPMPSIPMILANLGKAKFFTTLDLKSGYHQIYLAEHD 291
Query: 371 RRFLCFLYKGTVYQRTCLSFGLASAPQAFAQLSNWVAVLLRER-GVRCLVYLDDFLLASQ 429
R F G Y+ L FGL +A F + + V LRE+ G C VY+DD ++ S+
Sbjct: 292 REKTSFSVNGGKYEFCRLPFGLRNASSIFQRALDDV---LREQIGKICYVYVDDVIIFSE 348
Query: 430 DS 431
+
Sbjct: 349 NE 350
Score = 38.1 bits (87), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 68/295 (23%), Positives = 108/295 (36%), Gaps = 54/295 (18%)
Query: 519 KCNSLADALSRQALIPDWHLL--PSLTESVFPRWGSRVVPLYVTRNPQDS----KAAF-- 570
K N D+L Q + H PS+ F VVP V + +D+ K AF
Sbjct: 103 KLNLAEDSLEYQGIAEKLHYFSCPSVN---FTDVNDIVVPDSVKKEFKDTIIRRKKAFST 159
Query: 571 ----------IDAFSRKWDFKLAWVFPPPPLLQVLHHLN-DAQGLYGDGTMRP------- 612
+ A R D + + P L+ V +N + + L DG +RP
Sbjct: 160 TNEALPFNTAVTATIRTVDNEPVYSRAYPTLMGVSDFVNNEVKQLLKDGIIRPSRSPYNS 219
Query: 613 ---VFNLKSLNSYVTTKK-----FKLINHQKIP------------LFLQKNDYLATIDLS 652
V + K +++ K F+ +N + IP L K + T+DL
Sbjct: 220 PTWVVDKKGTDAFGNPNKRLVIDFRKLNEKTIPDRYPMPSIPMILANLGKAKFFTTLDLK 279
Query: 653 QAYCHIPIARRHRRFLCFLI---PMDMSSFRPSLSSPGVCPTIKLGRRLRER-GVRCLVY 708
Y I +A R F + + L + L LRE+ G C VY
Sbjct: 280 SGYHQIYLAEHDREKTSFSVNGGKYEFCRLPFGLRNASSIFQRALDDVLREQIGKICYVY 339
Query: 709 LDDFLLASQDPIVLKNQILQTLQLLTYLGWQVNLKKSQIIPSHRVDYLGISWDTD 763
+DD ++ S++ I L+ L +V+ +K++ V+YLG D
Sbjct: 340 VDDVIIFSENESDHVRHIDTVLKCLIDANMRVSQEKTRFF-KESVEYLGFIVSKD 393
>sp|Q7LHG5|YI31B_YEAST Transposon Ty3-I Gag-Pol polyprotein OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=TY3B-I PE=3 SV=2
Length = 1498
Score = 45.4 bits (106), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 41/79 (51%), Gaps = 6/79 (7%)
Query: 352 LATIDLSQAYCHIPIARRHRRFLCFLYKGTVYQRTCLSFGLASAPQAFAQLSNWVAVLLR 411
T+DL Y IP+ + R F+ Y+ T + FGL +AP FA+ ++A R
Sbjct: 708 FTTLDLHSGYHQIPMEPKDRYKTAFVTPSGKYEYTVMPFGLVNAPSTFAR---YMADTFR 764
Query: 412 E-RGVRCLVYLDDFLLASQ 429
+ R V VYLDD L+ S+
Sbjct: 765 DLRFVN--VYLDDILIFSE 781
Score = 35.0 bits (79), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 42/178 (23%), Positives = 67/178 (37%), Gaps = 16/178 (8%)
Query: 607 DGTMRPVFNLKSLNSYVTTKKFKLINHQKIPLFLQKNDYLATIDLSQAYCHIPIARRHRR 666
DGT R + ++LN + F L + + T+DL Y IP+ + R
Sbjct: 669 DGTFRLCVDYRTLNKATISDPFPLPRIDNLLSRIGNAQIFTTLDLHSGYHQIPMEPKDRY 728
Query: 667 FLCFLIPMDMSSFRPSLSSPGVCPTIKLGRRLRERGVRCL----VYLDDFLLASQDPIVL 722
F+ P + ++ G+ R R L VYLDD L+ S+ P
Sbjct: 729 KTAFVTP--SGKYEYTVMPFGLVNAPSTFARYMADTFRDLRFVNVYLDDILIFSESPEEH 786
Query: 723 KNQILQTLQLLTYLGWQVNLKKSQIIPSHRVDYLGISWDTDLLQVRLPVDKIPPLRDR 780
+ L+ L V KK + S ++LG S + + KI PL+ +
Sbjct: 787 WKHLDTVLERLKNENLIVKKKKCKFA-SEETEFLGYS---------IGIQKIAPLQHK 834
>sp|Q99315|YG31B_YEAST Transposon Ty3-G Gag-Pol polyprotein OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=TY3B-G PE=1 SV=3
Length = 1547
Score = 45.4 bits (106), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 41/79 (51%), Gaps = 6/79 (7%)
Query: 352 LATIDLSQAYCHIPIARRHRRFLCFLYKGTVYQRTCLSFGLASAPQAFAQLSNWVAVLLR 411
T+DL Y IP+ + R F+ Y+ T + FGL +AP FA+ ++A R
Sbjct: 682 FTTLDLHSGYHQIPMEPKDRYKTAFVTPSGKYEYTVMPFGLVNAPSTFAR---YMADTFR 738
Query: 412 E-RGVRCLVYLDDFLLASQ 429
+ R V VYLDD L+ S+
Sbjct: 739 DLRFVN--VYLDDILIFSE 755
Score = 34.7 bits (78), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 42/178 (23%), Positives = 67/178 (37%), Gaps = 16/178 (8%)
Query: 607 DGTMRPVFNLKSLNSYVTTKKFKLINHQKIPLFLQKNDYLATIDLSQAYCHIPIARRHRR 666
DGT R + ++LN + F L + + T+DL Y IP+ + R
Sbjct: 643 DGTFRLCVDYRTLNKATISDPFPLPRIDNLLSRIGNAQIFTTLDLHSGYHQIPMEPKDRY 702
Query: 667 FLCFLIPMDMSSFRPSLSSPGVCPTIKLGRRLRERGVRCL----VYLDDFLLASQDPIVL 722
F+ P + ++ G+ R R L VYLDD L+ S+ P
Sbjct: 703 KTAFVTP--SGKYEYTVMPFGLVNAPSTFARYMADTFRDLRFVNVYLDDILIFSESPEEH 760
Query: 723 KNQILQTLQLLTYLGWQVNLKKSQIIPSHRVDYLGISWDTDLLQVRLPVDKIPPLRDR 780
+ L+ L V KK + S ++LG S + + KI PL+ +
Sbjct: 761 WKHLDTVLERLKNENLIVKKKKCKFA-SEETEFLGYS---------IGIQKIAPLQHK 808
>sp|P27973|POL_SIVV1 Gag-Pol polyprotein OS=Simian immunodeficiency virus agm.vervet
(isolate AGM155) GN=gag-pol PE=3 SV=2
Length = 1470
Score = 44.7 bits (104), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/109 (25%), Positives = 49/109 (44%), Gaps = 9/109 (8%)
Query: 343 PLFLQKNDYLATIDLSQAYCHIPIARRHRRFLCFLY-------KGTVYQRTCLSFGLASA 395
P L+K + ID+ AY IP+ R++ F G YQ CL G +
Sbjct: 711 PAGLKKMKQITIIDVGDAYYSIPLDPEFRKYTAFTIPTVNNEGPGIRYQFNCLPQGWKGS 770
Query: 396 PQAFAQLSNWVAVLLRE--RGVRCLVYLDDFLLASQDSVVLKNQIFQTL 442
P F ++ + +++ + + + Y+DD + SQ+ +Q+ QTL
Sbjct: 771 PTIFQNTASKILEEIKKELKQLTIVQYMDDLWVGSQEEGPKHDQLVQTL 819
>sp|O92815|POL_WDSV Gag-Pol polyprotein OS=Walleye dermal sarcoma virus GN=gag-pol PE=1
SV=2
Length = 1752
Score = 44.3 bits (103), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 40/81 (49%), Gaps = 1/81 (1%)
Query: 351 YLATIDLSQAYCHIPIARRHRRFLCFLYKGTVYQRTCLSFGLASAPQAFAQ-LSNWVAVL 409
+ IDLS A+ +PI + + F ++G Y T L G +P F+Q L + +
Sbjct: 856 WFTVIDLSNAFFSVPIHKDSQYLFAFTFEGHQYTWTVLPQGFIHSPTLFSQALYQSLHKI 915
Query: 410 LRERGVRCLVYLDDFLLASQD 430
+ +Y+DD L+AS+D
Sbjct: 916 KFKISSEICIYMDDVLIASKD 936
>sp|P03162|DPOL_DHBV1 Protein P OS=Duck hepatitis B virus (strain United States/DHBV-16)
GN=P PE=3 SV=2
Length = 836
Score = 43.9 bits (102), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 33/127 (25%), Positives = 54/127 (42%), Gaps = 7/127 (5%)
Query: 648 TIDLSQAYCHIPIARRHRRFLCFLIPMDMSSFRPSLSSPGVCP------TIKLGRRLRER 701
++DLSQA+ H+P+ L + FR + G+ P T LG + R
Sbjct: 494 SLDLSQAFYHLPLNPASSSRLAVSDGQRVYYFRKAPMGVGLSPFLLHLFTTALGSEISRR 553
Query: 702 -GVRCLVYLDDFLLASQDPIVLKNQILQTLQLLTYLGWQVNLKKSQIIPSHRVDYLGISW 760
V Y+DDFLL + L L LG ++N K+ P + + +LG
Sbjct: 554 FNVWTFTYMDDFLLCHPNARHLNAISHAVCSFLQELGIRINFDKTTPSPVNEIRFLGYQI 613
Query: 761 DTDLLQV 767
D + +++
Sbjct: 614 DENFMKI 620
>sp|Q66403|DPOL_DHBVQ Protein P OS=Duck hepatitis B virus (isolate Shanghai/DHBVQCA34)
GN=P PE=3 SV=1
Length = 788
Score = 43.9 bits (102), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 33/127 (25%), Positives = 54/127 (42%), Gaps = 7/127 (5%)
Query: 648 TIDLSQAYCHIPIARRHRRFLCFLIPMDMSSFRPSLSSPGVCP------TIKLGRRLRER 701
++DLSQA+ H+P+ L + FR + G+ P T LG + R
Sbjct: 446 SLDLSQAFYHLPLNPASSSRLAVSDGQHVYYFRKAPMGVGLSPFLLHLFTTALGSEIARR 505
Query: 702 -GVRCLVYLDDFLLASQDPIVLKNQILQTLQLLTYLGWQVNLKKSQIIPSHRVDYLGISW 760
V Y+DDFLL + L + L LG ++N K+ P + + +LG
Sbjct: 506 FNVWTFTYMDDFLLCHPNARHLNSISHAVCSFLQELGIRINFDKTTPSPVNDIRFLGYQI 565
Query: 761 DTDLLQV 767
D +++
Sbjct: 566 DQKFMKI 572
>sp|P17193|DPOL_HPBDW Protein P OS=Duck hepatitis B virus (isolate white Shanghai duck
S31) GN=P PE=3 SV=1
Length = 788
Score = 43.9 bits (102), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 33/128 (25%), Positives = 54/128 (42%), Gaps = 7/128 (5%)
Query: 648 TIDLSQAYCHIPIARRHRRFLCFLIPMDMSSFRPSLSSPGVCP------TIKLGRRLRER 701
++DLSQA+ H+P+ L + FR + G+ P T LG + R
Sbjct: 446 SLDLSQAFYHLPLNPASSSRLAVSDGQHVYYFRKAPMGVGLSPFLLHLFTTALGSEIARR 505
Query: 702 -GVRCLVYLDDFLLASQDPIVLKNQILQTLQLLTYLGWQVNLKKSQIIPSHRVDYLGISW 760
V Y+DDFLL + L + L LG ++N K+ P + + +LG
Sbjct: 506 FNVWTFTYMDDFLLCHPNARHLNSISHAVCTFLQELGIRINFDKTTPSPVNDIRFLGYQI 565
Query: 761 DTDLLQVR 768
D +++
Sbjct: 566 DQKFMRIE 573
>sp|P27980|POL_SIVVG Gag-Pol polyprotein OS=Simian immunodeficiency virus agm.vervet
(isolate AGM3) GN=gag-pol PE=3 SV=2
Length = 1465
Score = 43.9 bits (102), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 30/117 (25%), Positives = 50/117 (42%), Gaps = 15/117 (12%)
Query: 343 PLFLQKNDYLATIDLSQAYCHIPIARRHRRFLCFLY-------KGTVYQRTCLSFGLASA 395
P +K + +D+ AY IP+ R++ F GT YQ CL G +
Sbjct: 712 PSGFEKMTEITVLDIGDAYYSIPLDPEFRKYTAFTIPSVNNQGPGTRYQFNCLPQGWKGS 771
Query: 396 PQAFAQLSNWVAVLLRE-----RGVRCLVYLDDFLLASQDSVVLKNQIFQTLPVNLS 447
P F N A +L E + + + Y+DD + SQ+ +++ + L + LS
Sbjct: 772 PTIF---QNTAASILEEIKKELKPLTIVQYMDDLWVGSQEDEYTHDRLVEQLRMKLS 825
>sp|P04323|POL3_DROME Retrovirus-related Pol polyprotein from transposon 17.6
OS=Drosophila melanogaster GN=pol PE=4 SV=1
Length = 1058
Score = 43.5 bits (101), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 31/111 (27%), Positives = 51/111 (45%), Gaps = 2/111 (1%)
Query: 318 IMFNLKSLNSYVTTKKFKLINHQKIPLFLQKNDYLATIDLSQAYCHIPIARRHRRFLCFL 377
I+ + + LN + + N +I L + +Y TIDL++ + I + F
Sbjct: 264 IVIDYRKLNEITVGDRHPIPNMDEILGKLGRCNYFTTIDLAKGFHQIEMDPESVSKTAFS 323
Query: 378 YKGTVYQRTCLSFGLASAPQAFAQLSNWVAVLLRERGVRCLVYLDDFLLAS 428
K Y+ + FGL +AP F + N + L + CLVYLDD ++ S
Sbjct: 324 TKHGHYEYLRMPFGLKNAPATFQRCMNDILRPLLNK--HCLVYLDDIIVFS 372
>sp|P27502|POL_RTBVP Polyprotein P3 OS=Rice tungro bacilliform virus (isolate Philippines)
PE=1 SV=1
Length = 1675
Score = 43.5 bits (101), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 29/114 (25%), Positives = 52/114 (45%), Gaps = 4/114 (3%)
Query: 318 IMFNLKSLNSYVTTKKFKLINHQKIPLFLQKNDYLATIDLSQAYCHIPIARRHRRFLCFL 377
I++N K LN + T F + + + +QK + + DL + H+ + + + F
Sbjct: 1241 IVYNYKRLNDNMHTDPFNIPHKISMINLIQKANIFSKFDLKAGFHHMKLKDDFKDWTTFT 1300
Query: 378 YKGTVYQRTCLSFGLASAPQAFAQLSNWVAVLLRERGVRCLVYLDDFLLASQDS 431
+Y FG+A+AP AF + L+ L+Y+DD L+AS +
Sbjct: 1301 CSEGLYTWNVCPFGIANAPCAFQRFMQESFGDLK----FALLYIDDILIASNNE 1350
>sp|P17192|DPOL_HPBDB Protein P OS=Duck hepatitis B virus (isolate brown Shanghai duck
S5) GN=P PE=3 SV=1
Length = 788
Score = 43.5 bits (101), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 32/127 (25%), Positives = 54/127 (42%), Gaps = 7/127 (5%)
Query: 648 TIDLSQAYCHIPIARRHRRFLCFLIPMDMSSFRPSLSSPGVCP------TIKLGRRLRER 701
++DLSQA+ H+P+ L + FR + G+ P T LG + R
Sbjct: 446 SLDLSQAFYHLPLNPASSSRLAVSDGQHVYYFRKAPMGVGLSPFLLHLFTTALGSEIARR 505
Query: 702 -GVRCLVYLDDFLLASQDPIVLKNQILQTLQLLTYLGWQVNLKKSQIIPSHRVDYLGISW 760
+ Y+DDFLL + L + L LG ++N K+ P + + +LG
Sbjct: 506 FNIWTFTYMDDFLLCHPNARHLNSISHAVCSFLQELGIRINFDKTTPSPVNDIRFLGYQI 565
Query: 761 DTDLLQV 767
D +++
Sbjct: 566 DQKFMKI 572
>sp|P30028|DPOL_HPBDC Protein P OS=Duck hepatitis B virus (strain China) GN=P PE=3 SV=1
Length = 787
Score = 43.1 bits (100), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 33/127 (25%), Positives = 53/127 (41%), Gaps = 7/127 (5%)
Query: 648 TIDLSQAYCHIPIARRHRRFLCFLIPMDMSSFRPSLSSPGVCP------TIKLGRRLRER 701
++DLSQA+ H+P+ L + FR + G+ P T LG + R
Sbjct: 445 SLDLSQAFYHLPLNPASSSRLAVSDGQRVYYFRKAPMGVGLSPFLLHLFTTALGSEIARR 504
Query: 702 -GVRCLVYLDDFLLASQDPIVLKNQILQTLQLLTYLGWQVNLKKSQIIPSHRVDYLGISW 760
V Y+DDFLL + L + L LG ++N K+ P + +LG
Sbjct: 505 FNVWTFTYMDDFLLCHPNARHLNSISHAVCTFLQELGIRINFDKTTPSPVTEIRFLGYQI 564
Query: 761 DTDLLQV 767
D +++
Sbjct: 565 DQKFMKI 571
>sp|Q6XKE6|POLG_PVCV2 Genome polyprotein OS=Petunia vein clearing virus (isolate Hohn) PE=3
SV=1
Length = 2180
Score = 42.7 bits (99), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 84/382 (21%), Positives = 146/382 (38%), Gaps = 77/382 (20%)
Query: 608 GTMRPVFNLKSLNSYVTTKKFKLINHQKIPLF--LQKNDYLATIDLSQAYCHIPIARRHR 665
G +R V N + LN ++ KF + N K+ LF L K + DL + + I R
Sbjct: 1438 GKLRLVINYQPLNHFLQDDKFPIPN--KLTLFSHLSKAKLFSKFDLKSGFWQLGIHPNER 1495
Query: 666 RFLCFLIPMDMSSFRPSLSSPGVCPTI---KLGRRLRERGVRCLVYLDDFLLAS---QDP 719
F IP ++ P++ + + + LVY+DD LL S +D
Sbjct: 1496 PKTGFCIPDRHFQWKVMPFGLKTAPSLFQKAMIKIFQPILFSALVYIDDILLFSETLEDH 1555
Query: 720 IVLKNQILQTLQLLTYLGWQVNLKKSQIIPSHRVDYLGISW------------------- 760
I L NQ + L+ G ++ KK I+ +++ +LG+ +
Sbjct: 1556 IKLLNQF---ISLVKKFGVMLSAKK-MILAQNKIQFLGMDFADGTFSPAGHISLELQKFP 1611
Query: 761 DTDL--------------LQVRLP------------VDKIPPLRDRLQTQALIELKWFYH 794
DT+L ++ +P + K PP + Q A+ +LK
Sbjct: 1612 DTNLSVKQIQQFLGIVNYIRDFIPEVTEHISPLSDMLKKKPPAWGKCQDNAVKQLKQLAQ 1671
Query: 795 NLTGFTPLH-PPVPRTFMSTDASDVGWGAMV-----GNVSV----QGVWTQAQRSWHINL 844
+ LH P + + TDASD W A++ G + G + +++ +H
Sbjct: 1672 QVKS---LHIPSEGKKILQTDASDQYWSAVLLEEHNGKRKICGFASGKFKVSEQHYHSTF 1728
Query: 845 KELFTVRAAISSNPSLVANHTVVLQSDNKTVIAYIRKQGGLRSHALLAETKKLLLIMSKL 904
KE+ V+ I + + +++ D + IR + ++ L + S
Sbjct: 1729 KEILAVKNGIKKFNFFLIHTNFLVEMDMRAFPKMIRLNPKIVPNSQLLRWAQWF---SPY 1785
Query: 905 NIHIVPYFIPGKCNSLADALSR 926
+ + GK N LAD LSR
Sbjct: 1786 QFEVK--HLKGKDNILADFLSR 1805
Score = 42.4 bits (98), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 38/130 (29%), Positives = 57/130 (43%), Gaps = 14/130 (10%)
Query: 316 LSIMFNLKSLNSYVTTKKFKLINHQKIPLF--LQKNDYLATIDLSQAYCHIPIARRHRRF 373
L ++ N + LN ++ KF + N K+ LF L K + DL + + I R
Sbjct: 1440 LRLVINYQPLNHFLQDDKFPIPN--KLTLFSHLSKAKLFSKFDLKSGFWQLGIHPNERPK 1497
Query: 374 LCFLYKGTVYQRTCLSFGLASAPQAF--AQLSNWVAVLLRERGVRCLVYLDDFLLAS--- 428
F +Q + FGL +AP F A + + +L LVY+DD LL S
Sbjct: 1498 TGFCIPDRHFQWKVMPFGLKTAPSLFQKAMIKIFQPILF-----SALVYIDDILLFSETL 1552
Query: 429 QDSVVLKNQI 438
+D + L NQ
Sbjct: 1553 EDHIKLLNQF 1562
>sp|Q91DM0|POLG_PVCV1 Genome polyprotein OS=Petunia vein clearing virus (isolate Shepherd)
PE=3 SV=1
Length = 2179
Score = 42.7 bits (99), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 88/388 (22%), Positives = 149/388 (38%), Gaps = 89/388 (22%)
Query: 608 GTMRPVFNLKSLNSYVTTKKFKLINHQKIPLF--LQKNDYLATIDLSQAYCHIPIARRHR 665
G +R V N + LN ++ KF + N K+ LF L K + DL + + I R
Sbjct: 1437 GKLRLVINYQPLNHFLQDDKFPIPN--KLTLFSHLSKAKLFSKFDLKSGFWQLGIHPNER 1494
Query: 666 RFLCFLIPMDMSSFR---------PSLSSPGVCPTIKLGRRLRERGVRCLVYLDDFLLAS 716
F IP ++ PSL + IK+ + + LVY+DD LL S
Sbjct: 1495 PKTGFCIPDRHFQWKVMPFGLKTAPSLFQKAM---IKIFQPIL---FSALVYIDDILLFS 1548
Query: 717 ---QDPIVLKNQILQTLQLLTYLGWQVNLKKSQIIPSHRVDYLGISW------------- 760
+D I L NQ + L+ G ++ KK I+ +++ +LG+ +
Sbjct: 1549 ETLEDHIKLLNQF---ISLVKKFGVMLSAKK-MILAQNKIQFLGMDFADGTFSPAGHISL 1604
Query: 761 ------DTDL--------------LQVRLP------------VDKIPPLRDRLQTQALIE 788
DT+L ++ +P + K PP + Q A+ +
Sbjct: 1605 ELQKFPDTNLSVKQIQQFLGIVNYIRDFIPEVTEHISPLSDMLKKKPPAWGKCQDNAVKQ 1664
Query: 789 LKWFYHNLTGFTPLH-PPVPRTFMSTDASDVGWGAMV-----GNVSV----QGVWTQAQR 838
LK + LH P + + TDASD W A++ G + G + +++
Sbjct: 1665 LKQLAQQVKS---LHIPSEGKKILQTDASDQYWSAVLLEEHNGKRKICGFASGKFKVSEQ 1721
Query: 839 SWHINLKELFTVRAAISSNPSLVANHTVVLQSDNKTVIAYIRKQGGLRSHALLAETKKLL 898
+H KE+ V+ I + + +++ D + IR + ++ L +
Sbjct: 1722 HYHSTFKEILAVKNGIKKFNFFLIHTNFLVEMDMRAFPKMIRLNPKIVPNSQLLRWAQWF 1781
Query: 899 LIMSKLNIHIVPYFIPGKCNSLADALSR 926
S + + GK N LAD LSR
Sbjct: 1782 ---SPYQFEVK--HLKGKDNILADFLSR 1804
Score = 42.0 bits (97), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 38/130 (29%), Positives = 57/130 (43%), Gaps = 14/130 (10%)
Query: 316 LSIMFNLKSLNSYVTTKKFKLINHQKIPLF--LQKNDYLATIDLSQAYCHIPIARRHRRF 373
L ++ N + LN ++ KF + N K+ LF L K + DL + + I R
Sbjct: 1439 LRLVINYQPLNHFLQDDKFPIPN--KLTLFSHLSKAKLFSKFDLKSGFWQLGIHPNERPK 1496
Query: 374 LCFLYKGTVYQRTCLSFGLASAPQAF--AQLSNWVAVLLRERGVRCLVYLDDFLLAS--- 428
F +Q + FGL +AP F A + + +L LVY+DD LL S
Sbjct: 1497 TGFCIPDRHFQWKVMPFGLKTAPSLFQKAMIKIFQPILF-----SALVYIDDILLFSETL 1551
Query: 429 QDSVVLKNQI 438
+D + L NQ
Sbjct: 1552 EDHIKLLNQF 1561
>sp|Q05654|RTF21_SCHPO Retrotransposable element Tf2 155 kDa protein type 1
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=Tf2-1 PE=4 SV=1
Length = 1333
Score = 42.0 bits (97), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 29/114 (25%), Positives = 53/114 (46%), Gaps = 2/114 (1%)
Query: 316 LSIMFNLKSLNSYVTTKKFKLINHQKIPLFLQKNDYLATIDLSQAYCHIPIARRHRRFLC 375
L ++ + K LN YV + L +++ +Q + +DL AY I + + L
Sbjct: 462 LRMVVDYKPLNKYVKPNIYPLPLIEQLLAKIQGSTIFTKLDLKSAYHLIRVRKGDEHKLA 521
Query: 376 FLYKGTVYQRTCLSFGLASAPQAFAQLSNWVAVLLRERGVRCLVYLDDFLLASQ 429
F V++ + +G+++AP F N + +E V C Y+DD L+ S+
Sbjct: 522 FRCPRGVFEYLVMPYGISTAPAHFQYFINTILGEAKESHVVC--YMDDILIHSK 573
Score = 37.4 bits (85), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 91/397 (22%), Positives = 148/397 (37%), Gaps = 101/397 (25%)
Query: 607 DGTMRPVFNLKSLNSYVTTKKFKLINHQKIPLFLQKNDYLATIDLSQAYCHIPIARRHRR 666
+GT+R V + K LN YV + L +++ +Q + +DL AY I + +
Sbjct: 459 EGTLRMVVDYKPLNKYVKPNIYPLPLIEQLLAKIQGSTIFTKLDLKSAYHLIRVRKGDEH 518
Query: 667 FLCFLIPMDMSSFRPSLSSPGVCP--------TIKLGRRLRERGVRCLVYLDDFLLASQD 718
L F P + + P TI LG +E V C Y+DD L+ S+
Sbjct: 519 KLAFRCPRGVFEYLVMPYGISTAPAHFQYFINTI-LG-EAKESHVVC--YMDDILIHSKS 574
Query: 719 PIVLKNQILQTLQLLTYLGWQVNLKKSQIIPSHRVDYLGISWDT-----------DLLQV 767
+ LQ L +N K + S +V ++G +LQ
Sbjct: 575 ESEHVKHVKDVLQKLKNANLIINQAKCEFHQS-QVKFIGYHISEKGFTPCQENIDKVLQW 633
Query: 768 RLPVDK----------------IP-------PLRDRL-----------QTQALIELKWFY 793
+ P ++ IP PL + L QTQA+ +K
Sbjct: 634 KQPKNRKELRQFLGSVNYLRKFIPKTSQLTHPLNNLLKKDVRWKWTPTQTQAIENIKQCL 693
Query: 794 HNLTGFTPLHPPVPRTF-------MSTDASDVGWGAM------------VGNVSVQGVWT 834
+ PPV R F + TDASDV GA+ VG S + +
Sbjct: 694 --------VSPPVLRHFDFSKKILLETDASDVAVGAVLSQKHDDDKYYPVGYYSAK--MS 743
Query: 835 QAQRSWHINLKELFTVRAAISSNPSLVAN--HTVVLQSDNKTVIAYIRKQGGLRSHALLA 892
+AQ ++ ++ KE+ + ++ + + + +D++ +I I +
Sbjct: 744 KAQLNYSVSDKEMLAIIKSLKHWRHYLESTIEPFKILTDHRNLIGRITNESE-------P 796
Query: 893 ETKKLL---LIMSKLNIHIVPYFIPGKCNSLADALSR 926
E K+L L + N I + PG N +ADALSR
Sbjct: 797 ENKRLARWQLFLQDFNFEI--NYRPGSANHIADALSR 831
>sp|P27401|POL_SFV3L Pro-Pol polyprotein OS=Simian foamy virus type 3 (strain LK3)
GN=pol PE=3 SV=2
Length = 1143
Score = 42.0 bits (97), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 35/121 (28%), Positives = 58/121 (47%), Gaps = 10/121 (8%)
Query: 707 VYLDDFLLASQDPIVLKNQILQTLQLLTYLGWQVNLKKSQIIPSHRVDYLGISWD----- 761
VY+DD ++ DP Q+ + LL G+ V+LKKS+I H V++LG +
Sbjct: 311 VYVDDIYISHDDPREHLEQLEKVFSLLLNAGYVVSLKKSEIA-QHEVEFLGFNITKEGRG 369
Query: 762 -TDLLQVRLPVDKIPPLRDRLQTQALIELKWFYHN-LTGFTPLHPPVPRTFMSTDASDVG 819
T+ + +L I P RD Q Q+++ L F N + F+ L P+ + + +
Sbjct: 370 LTETFKQKL--LNITPPRDLKQLQSILGLLNFARNFIPNFSELVKPLYNIIATANGKYIT 427
Query: 820 W 820
W
Sbjct: 428 W 428
>sp|P0C691|DPOL_DHBV3 Protein P OS=Duck hepatitis B virus (strain Germany/DHBV-3) GN=P
PE=1 SV=1
Length = 786
Score = 42.0 bits (97), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 33/127 (25%), Positives = 53/127 (41%), Gaps = 7/127 (5%)
Query: 648 TIDLSQAYCHIPIARRHRRFLCFLIPMDMSSFRPSLSSPGVCP------TIKLGRRLRER 701
++DLSQA+ H+P+ L + FR + G+ P T LG + R
Sbjct: 444 SLDLSQAFYHLPLNPASSSRLAVSDGQWVYYFRKAPMGVGLSPFLLHLFTTALGSEISRR 503
Query: 702 -GVRCLVYLDDFLLASQDPIVLKNQILQTLQLLTYLGWQVNLKKSQIIPSHRVDYLGISW 760
V Y+DDFLL + L + L LG ++N K+ P + +LG
Sbjct: 504 FNVWTFTYMDDFLLCHPNARHLNSISHAVCSFLQELGIRINFDKTTPSPVTEIRFLGYQI 563
Query: 761 DTDLLQV 767
D +++
Sbjct: 564 DEHFMKI 570
>sp|P03363|POL_HTLV2 Gag-Pro-Pol polyprotein OS=Human T-cell leukemia virus 2
GN=gag-pro-pol PE=1 SV=4
Length = 1461
Score = 40.8 bits (94), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 42/87 (48%), Gaps = 9/87 (10%)
Query: 351 YLATIDLSQAYCHIPIARRHRRFLCFLY-------KGTVYQRTCLSFGLASAPQAFAQLS 403
+L TIDL+ A+ IP+ ++++ + F GT Y T L G ++P F Q
Sbjct: 673 HLQTIDLTDAFFQIPLPKQYQPYFAFTIPQPCNYGPGTRYAWTVLPQGFKNSPTLFEQQL 732
Query: 404 NWVAVLLRERGVRCLV--YLDDFLLAS 428
V +R+ + Y+DD LLAS
Sbjct: 733 AAVLNPMRKMFPTSTIVQYMDDILLAS 759
Score = 33.5 bits (75), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 40/167 (23%), Positives = 73/167 (43%), Gaps = 18/167 (10%)
Query: 607 DGTMRPVFNLKSLNSYVTTKKFKLINHQKIPLFLQKNDYLATIDLSQAYCHIPIARRHRR 666
+G R + +L++ N+ TT + +L TIDL+ A+ IP+ ++++
Sbjct: 635 NGKWRFIHDLRATNAITTTLTSPSPGPPDLTSLPTALPHLQTIDLTDAFFQIPLPKQYQP 694
Query: 667 FLCFLIPMDMS--------------SFR--PSLSSPGVCPTIKLGRRLRERGVRCLVYLD 710
+ F IP + F+ P+L + + R++ + Y+D
Sbjct: 695 YFAFTIPQPCNYGPGTRYAWTVLPQGFKNSPTLFEQQLAAVLNPMRKMFPTST-IVQYMD 753
Query: 711 DFLLASQDPIVLKNQILQTLQLLTYLGWQVNLKKSQIIPSHRVDYLG 757
D LLAS L+ TLQ LT G ++ +K+Q P ++ +LG
Sbjct: 754 DILLASPTNEELQQLSQLTLQALTTHGLPISQEKTQQTPG-QIRFLG 799
>sp|P14350|POL_FOAMV Pro-Pol polyprotein OS=Human spumaretrovirus GN=pol PE=1 SV=2
Length = 1143
Score = 40.8 bits (94), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 69/288 (23%), Positives = 114/288 (39%), Gaps = 26/288 (9%)
Query: 607 DGTMRPVFNLKSLNSYVTTKKFKLINHQKIPLFLQKNDYLATIDLSQAYCHIPIARRHRR 666
DG R V + + +N + + + I + + Y T+DL+ + PI
Sbjct: 209 DGRWRMVLDYREVNKTIPLTAAQNQHSAGILATIVRQKYKTTLDLANGFWAHPITPESYW 268
Query: 667 FLCFLIPMDMSSF----RPSLSSPGVCPTIKLGRRLRERGVRCLVYLDDFLLASQDPIVL 722
F + + L+SP + T + L+E VY+DD L+ DP
Sbjct: 269 LTAFTWQGKQYCWTRLPQGFLNSPALF-TADVVDLLKEIP-NVQVYVDDIYLSHDDPKEH 326
Query: 723 KNQILQTLQLLTYLGWQVNLKKSQIIPSHRVDYLGISWD------TDLLQVRLPVDKIPP 776
Q+ + Q+L G+ V+LKKS+ I V++LG + TD + +L I P
Sbjct: 327 VQQLEKVFQILLQAGYVVSLKKSE-IGQKTVEFLGFNITKEGRGLTDTFKTKL--LNITP 383
Query: 777 LRDRLQTQALIELKWFYHN-LTGFTPLHPPVPRTFMSTDASDVGWGAMVG---NVSVQGV 832
+D Q Q+++ L F N + F L P+ S + W N+ ++ +
Sbjct: 384 PKDLKQLQSILGLLNFARNFIPNFAELVQPLYNLIASAKGKYIEWSEENTKQLNMVIEAL 443
Query: 833 WTQAQRSWHINLKE-LFTVRAAISSNPSLVANHTVVLQSDNKTVIAYI 879
T + NL+E L R I N S A + K I Y+
Sbjct: 444 NTAS------NLEERLPEQRLVIKVNTSPSAGYVRYYNETGKKPIMYL 485
>sp|P0C211|POL_HTL1L Gag-Pro-Pol polyprotein OS=Human T-cell leukemia virus 1 (isolate
Melanesia mel5 subtype C) GN=gag-pro-pol PE=3 SV=2
Length = 1462
Score = 40.0 bits (92), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 49/207 (23%), Positives = 89/207 (42%), Gaps = 26/207 (12%)
Query: 606 GDGTMRPVFNLKSLNSYVTTKKFKLINHQKIPLFLQKNDYLATIDLSQAYCHIPIARRHR 665
+GT R + +L++ NS + +L TIDL A+ IP+ ++ +
Sbjct: 636 ANGTWRFIHDLRATNSLTVDLSSSSPGPPDLSSLPTTLAHLQTIDLKDAFFQIPLPKQFQ 695
Query: 666 RFLCFLIPMDMSSFRPSLSSPGVCP----------TIKLG---RRLRERGVRCLV--YLD 710
+ F +P + + + V P ++L + +R+ +C++ Y+D
Sbjct: 696 PYFAFTVPQQCNYGPGTRYAWKVLPQGFKNSPTLFEMQLASILQPIRQAFPQCVILQYMD 755
Query: 711 DFLLASQDPIVLKNQILQTLQLLTYLGWQVNLKKSQIIPSHRVDYLGISWDTDLLQVRLP 770
D LLAS P L+ T+ L G V+ K+Q P + +LG + +
Sbjct: 756 DILLASPSPEDLQQLSEATMASLISHGLPVSQDKTQQTPG-TIKFLGQIISPN----HIT 810
Query: 771 VDKIP--PLRDRL---QTQALI-ELKW 791
D +P P+R R + QAL+ E++W
Sbjct: 811 YDAVPTVPIRSRWALPELQALLGEIQW 837
Score = 39.7 bits (91), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 41/87 (47%), Gaps = 9/87 (10%)
Query: 351 YLATIDLSQAYCHIPIARRHRRFLCFLY-------KGTVYQRTCLSFGLASAPQAFAQLS 403
+L TIDL A+ IP+ ++ + + F GT Y L G ++P F
Sbjct: 675 HLQTIDLKDAFFQIPLPKQFQPYFAFTVPQQCNYGPGTRYAWKVLPQGFKNSPTLFEMQL 734
Query: 404 NWVAVLLRERGVRCLV--YLDDFLLAS 428
+ +R+ +C++ Y+DD LLAS
Sbjct: 735 ASILQPIRQAFPQCVILQYMDDILLAS 761
>sp|O92956|POL_RSVSB Gag-Pro-Pol polyprotein OS=Rous sarcoma virus (strain
Schmidt-Ruppin B) GN=gag-pro-pol PE=1 SV=2
Length = 1603
Score = 39.7 bits (91), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 43/175 (24%), Positives = 73/175 (41%), Gaps = 33/175 (18%)
Query: 612 PVFNL-KSLNSYVTTKKFKLINHQKIPL-----------FLQKNDYLATIDLSQAYCHIP 659
PVF + K+ SY + +N + +P L + L +DL + IP
Sbjct: 765 PVFVIRKASGSYRLLHDLRAVNAKLVPFGAVQQGAPVLSALPRGWPLMVLDLKDCFFSIP 824
Query: 660 IARRHRRFLCFLIPMDMSSFRPS------------LSSPGVCPTIKLGR-----RLRERG 702
+A + R F +P +++ P+ SP +C + +G+ RL+
Sbjct: 825 LAEQDREAFAFTLP-SVNNQAPARRFQWKVLPQGMTCSPTICQLV-VGQVLEPLRLKHPS 882
Query: 703 VRCLVYLDDFLLASQDPIVLKNQILQTLQLLTYLGWQVNLKKSQIIPSHRVDYLG 757
+R L Y+DD LLA+ L+ + + L G+ ++ K Q P V YLG
Sbjct: 883 LRMLHYMDDLLLAASSHDGLEAAGEEVINTLERAGFTISPDKIQREPG--VQYLG 935
>sp|Q04095|POL_RSVSA Gag-Pro-Pol polyprotein OS=Avian leukosis virus RSA GN=gag-pro-pol
PE=3 SV=2
Length = 1603
Score = 39.7 bits (91), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 43/175 (24%), Positives = 73/175 (41%), Gaps = 33/175 (18%)
Query: 612 PVFNL-KSLNSYVTTKKFKLINHQKIPL-----------FLQKNDYLATIDLSQAYCHIP 659
PVF + K+ SY + +N + +P L + L +DL + IP
Sbjct: 765 PVFVIRKASGSYRLLHDLRAVNAKLVPFGAVQQGAPVLSALPRGWPLMVLDLKDCFFSIP 824
Query: 660 IARRHRRFLCFLIPMDMSSFRPS------------LSSPGVCPTIKLGR-----RLRERG 702
+A + R F +P +++ P+ SP +C + +G+ RL+
Sbjct: 825 LAEQDREAFAFTLP-SVNNQAPARRFQWKVLPQGMTCSPTICQLV-VGQVLEPLRLKHPS 882
Query: 703 VRCLVYLDDFLLASQDPIVLKNQILQTLQLLTYLGWQVNLKKSQIIPSHRVDYLG 757
+R L Y+DD LLA+ L+ + + L G+ ++ K Q P V YLG
Sbjct: 883 LRMLHYMDDLLLAASSHDGLEAAGEEVISTLERAGFTISPDKIQREPG--VQYLG 935
>sp|Q7SQ98|POL_ALV Pol polyprotein OS=Avian leukosis virus GN=pol PE=3 SV=1
Length = 895
Score = 39.7 bits (91), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 43/175 (24%), Positives = 73/175 (41%), Gaps = 33/175 (18%)
Query: 612 PVFNL-KSLNSYVTTKKFKLINHQKIPL-----------FLQKNDYLATIDLSQAYCHIP 659
PVF + K+ SY + +N + +P L + L +DL + IP
Sbjct: 57 PVFVIRKASGSYRLLHDLRAVNAKLVPFGAVQQGAPVLSALPRGWPLMVLDLKDCFFSIP 116
Query: 660 IARRHRRFLCFLIPMDMSSFRPS------------LSSPGVCPTIKLGR-----RLRERG 702
+A + R F +P +++ P+ SP +C + +G+ RL+
Sbjct: 117 LAEQDREAFAFTLP-SVNNQAPARRFQWKVLPQGMTCSPTICQLV-VGQVLEPLRLKHPS 174
Query: 703 VRCLVYLDDFLLASQDPIVLKNQILQTLQLLTYLGWQVNLKKSQIIPSHRVDYLG 757
+R L Y+DD LLA+ L+ + + L G+ ++ K Q P V YLG
Sbjct: 175 LRMLHYMDDLLLAASSHDGLEAAGEEVISTLERAGFTISPDKIQREPG--VQYLG 227
>sp|Q8I7P9|POL5_DROME Retrovirus-related Pol polyprotein from transposon opus
OS=Drosophila melanogaster GN=pol PE=4 SV=1
Length = 1003
Score = 39.7 bits (91), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 29/114 (25%), Positives = 50/114 (43%), Gaps = 4/114 (3%)
Query: 318 IMFNLKSLNSYVTTKKFKLINHQKIPLFLQKNDYLATIDLSQAYCHIPIARRHRRFLCFL 377
++ + K LN+ + + + L Y T+DL+ + I + F
Sbjct: 180 MVVDFKRLNTVTIPDTYPIPDINATLASLGNAKYFTTLDLTSGFHQIHMKESDIPKTAFS 239
Query: 378 YKGTVYQRTCLSFGLASAPQAFAQLSNWVAVLLRER-GVRCLVYLDDFLLASQD 430
Y+ L FGL +AP F ++ + +LRE G C VY+DD ++ S+D
Sbjct: 240 TLNGKYEFLRLPFGLKNAPAIFQRM---IDDILREHIGKVCYVYIDDIIVFSED 290
Score = 33.5 bits (75), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 36/163 (22%), Positives = 68/163 (41%), Gaps = 19/163 (11%)
Query: 606 GDGTMRPVFNLKSLNSYVTTKKFKLINHQKIPLFLQKNDYLATIDLSQAYCHIPIARR-- 663
G+ R V + K LN+ + + + L Y T+DL+ + I +
Sbjct: 174 GEKQYRMVVDFKRLNTVTIPDTYPIPDINATLASLGNAKYFTTLDLTSGFHQIHMKESDI 233
Query: 664 --------HRRFLCFLIPMDMSSFRPSLSSPGVCPTIKLGRRLRER-GVRCLVYLDDFLL 714
+ ++ +P + + +P + + + LRE G C VY+DD ++
Sbjct: 234 PKTAFSTLNGKYEFLRLPFGLKN------APAIFQRM-IDDILREHIGKVCYVYIDDIIV 286
Query: 715 ASQDPIVLKNQILQTLQLLTYLGWQVNLKKSQIIPSHRVDYLG 757
S+D + L L+ QVNL+KS + + +V++LG
Sbjct: 287 FSEDYDTHWKNLRLVLASLSKANLQVNLEKSHFLDT-QVEFLG 328
>sp|P23074|POL_SFV1 Pro-Pol polyprotein OS=Simian foamy virus type 1 GN=pol PE=1 SV=3
Length = 1149
Score = 39.7 bits (91), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 53/207 (25%), Positives = 87/207 (42%), Gaps = 19/207 (9%)
Query: 707 VYLDDFLLASQDPIVLKNQILQTLQLLTYLGWQVNLKKSQIIPSHRVDYLGISWD----- 761
Y+DD ++ DP Q+ + +L G+ V+LKKS+I V++LG +
Sbjct: 311 AYVDDIYISHDDPQEHLEQLEKIFSILLNAGYVVSLKKSEIA-QREVEFLGFNITKEGRG 369
Query: 762 -TDLLQVRLPVDKIPPLRDRLQTQALIELKWFYHN-LTGFTPLHPPVPRTFMSTDASDVG 819
TD + +L I P +D Q Q+++ L F N + ++ L P+ + + +
Sbjct: 370 LTDTFKQKL--LNITPPKDLKQLQSILGLLNFARNFIPNYSELVKPLYTIVANANGKFIS 427
Query: 820 WGAMVGN--VSVQGVWTQAQRSWHINLKELF-TVRAAISSNPSLVANHTVVLQSDNKTVI 876
W N + V QA NL+E R I N S A + +K I
Sbjct: 428 WTEDNSNQLQHIISVLNQAD-----NLEERNPETRLIIKVNSSPSAGYIRYYNEGSKRPI 482
Query: 877 AYIRKQGGLRSHALLAETKKLLLIMSK 903
Y+ ++ A +T+KLL M K
Sbjct: 483 MYVNYIFS-KAEAKFTQTEKLLTTMHK 508
>sp|P05895|POL_SIVVT Gag-Pol polyprotein OS=Simian immunodeficiency virus agm.vervet
(isolate AGM TYO-1) GN=gag-pol PE=3 SV=2
Length = 1467
Score = 39.3 bits (90), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 31/117 (26%), Positives = 49/117 (41%), Gaps = 15/117 (12%)
Query: 343 PLFLQKNDYLATIDLSQAYCHIPIARRHRRFLCFLY-------KGTVYQRTCLSFGLASA 395
P L+K + +D+ AY IP+ R++ F G YQ CL G +
Sbjct: 715 PAGLRKMRQITVLDVGDAYYSIPLDPNFRKYTAFTIPTVNNQGPGIRYQFNCLPQGWKGS 774
Query: 396 PQAFAQLSNWVAVLLRE--RGVRCLV---YLDDFLLASQDSVVLKNQIFQTLPVNLS 447
P F N A +L E R + L Y+DD + SQ++ +++ + L L
Sbjct: 775 PTIF---QNTAASILEEIKRNLPALTIVQYMDDLWVGSQENEHTHDKLVEQLRTKLQ 828
>sp|Q9C0R2|RTF22_SCHPO Retrotransposable element Tf2 155 kDa protein type 2
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=Tf2-7 PE=4 SV=1
Length = 1333
Score = 39.3 bits (90), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 28/114 (24%), Positives = 53/114 (46%), Gaps = 2/114 (1%)
Query: 316 LSIMFNLKSLNSYVTTKKFKLINHQKIPLFLQKNDYLATIDLSQAYCHIPIARRHRRFLC 375
L ++ + K LN YV + L +++ +Q + +DL AY I + + L
Sbjct: 462 LRMVVDYKPLNKYVKPNIYPLPLIEQLLAKIQGSTIFTKLDLKSAYHLIRVRKGDEHKLA 521
Query: 376 FLYKGTVYQRTCLSFGLASAPQAFAQLSNWVAVLLRERGVRCLVYLDDFLLASQ 429
F V++ + +G++ AP F N + ++E V C Y+D+ L+ S+
Sbjct: 522 FRCPRGVFEYLVMPYGISIAPAHFQYFINTILGEVKESHVVC--YMDNILIHSK 573
Score = 37.4 bits (85), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 90/397 (22%), Positives = 150/397 (37%), Gaps = 101/397 (25%)
Query: 607 DGTMRPVFNLKSLNSYVTTKKFKLINHQKIPLFLQKNDYLATIDLSQAYCHIPIARRHRR 666
+GT+R V + K LN YV + L +++ +Q + +DL AY I + +
Sbjct: 459 EGTLRMVVDYKPLNKYVKPNIYPLPLIEQLLAKIQGSTIFTKLDLKSAYHLIRVRKGDEH 518
Query: 667 FLCFLIPMDMSSFRPSLSSPGVCP--------TIKLGRRLRERGVRCLVYLDDFLLASQD 718
L F P + + + P TI LG ++E V C Y+D+ L+ S+
Sbjct: 519 KLAFRCPRGVFEYLVMPYGISIAPAHFQYFINTI-LG-EVKESHVVC--YMDNILIHSKS 574
Query: 719 PIVLKNQILQTLQLLTYLGWQVNLKKSQIIPSHRVDYLGISWDT-----------DLLQV 767
+ LQ L +N K + S +V ++G +LQ
Sbjct: 575 ESEHVKHVKDVLQKLKNANLIINQAKCEFHQS-QVKFIGYHISEKGFTPCQENIDKVLQW 633
Query: 768 RLPVDK----------------IP-------PLRDRL-----------QTQALIELKWFY 793
+ P ++ IP PL + L QTQA+ +K
Sbjct: 634 KQPKNRKELRQFLGSVNYLRKFIPKTSQLTHPLNNLLKKDVRWKWTPTQTQAIENIKQCL 693
Query: 794 HNLTGFTPLHPPVPRTF-------MSTDASDVGWGAM------------VGNVSVQGVWT 834
+ PPV R F + TDASDV GA+ VG S + +
Sbjct: 694 --------VSPPVLRHFDFSKKILLETDASDVAVGAVLSQKHDDDKYYPVGYYSAK--MS 743
Query: 835 QAQRSWHINLKELFTVRAAISSNPSLVAN--HTVVLQSDNKTVIAYIRKQGGLRSHALLA 892
+AQ ++ ++ KE+ + ++ + + + +D++ +I I +
Sbjct: 744 KAQLNYSVSDKEMLAIIKSLKHWRHYLESTIEPFKILTDHRNLIGRITNESE-------P 796
Query: 893 ETKKLL---LIMSKLNIHIVPYFIPGKCNSLADALSR 926
E K+L L + N I + PG N +ADALSR
Sbjct: 797 ENKRLARWQLFLQDFNFEI--NYRPGSANHIADALSR 831
>sp|Q9UR07|RTF23_SCHPO Retrotransposable element Tf2 155 kDa protein type 3
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=Tf2-11 PE=4 SV=1
Length = 1333
Score = 39.3 bits (90), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 28/114 (24%), Positives = 53/114 (46%), Gaps = 2/114 (1%)
Query: 316 LSIMFNLKSLNSYVTTKKFKLINHQKIPLFLQKNDYLATIDLSQAYCHIPIARRHRRFLC 375
L ++ + K LN YV + L +++ +Q + +DL AY I + + L
Sbjct: 462 LRMVVDYKPLNKYVKPNIYPLPLIEQLLAKIQGSTIFTKLDLKSAYHLIRVRKGDEHKLA 521
Query: 376 FLYKGTVYQRTCLSFGLASAPQAFAQLSNWVAVLLRERGVRCLVYLDDFLLASQ 429
F V++ + +G++ AP F N + ++E V C Y+D+ L+ S+
Sbjct: 522 FRCPRGVFEYLVMPYGISIAPAHFQYFINTILGEVKESHVVC--YMDNILIHSK 573
Score = 37.0 bits (84), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 90/397 (22%), Positives = 150/397 (37%), Gaps = 101/397 (25%)
Query: 607 DGTMRPVFNLKSLNSYVTTKKFKLINHQKIPLFLQKNDYLATIDLSQAYCHIPIARRHRR 666
+GT+R V + K LN YV + L +++ +Q + +DL AY I + +
Sbjct: 459 EGTLRMVVDYKPLNKYVKPNIYPLPLIEQLLAKIQGSTIFTKLDLKSAYHLIRVRKGDEH 518
Query: 667 FLCFLIPMDMSSFRPSLSSPGVCP--------TIKLGRRLRERGVRCLVYLDDFLLASQD 718
L F P + + + P TI LG ++E V C Y+D+ L+ S+
Sbjct: 519 KLAFRCPRGVFEYLVMPYGISIAPAHFQYFINTI-LG-EVKESHVVC--YMDNILIHSKS 574
Query: 719 PIVLKNQILQTLQLLTYLGWQVNLKKSQIIPSHRVDYLGISWDT-----------DLLQV 767
+ LQ L +N K + S +V ++G +LQ
Sbjct: 575 ESEHVKHVKDVLQKLKNANLIINQAKCEFHQS-QVKFIGYHISEKGFTPCQENIDKVLQW 633
Query: 768 RLPVDK----------------IP-------PLRDRL-----------QTQALIELKWFY 793
+ P ++ IP PL + L QTQA+ +K
Sbjct: 634 KQPKNRKELRQFLGSVNYLRKFIPKTSQLTHPLNNLLKKDVRWKWTPTQTQAIENIKQCL 693
Query: 794 HNLTGFTPLHPPVPRTF-------MSTDASDVGWGAM------------VGNVSVQGVWT 834
+ PPV R F + TDASDV GA+ VG S + +
Sbjct: 694 --------VSPPVLRHFDFSKKILLETDASDVAVGAVLSQKHDDDKYYPVGYYSAK--MS 743
Query: 835 QAQRSWHINLKELFTVRAAISSNPSLVAN--HTVVLQSDNKTVIAYIRKQGGLRSHALLA 892
+AQ ++ ++ KE+ + ++ + + + +D++ +I I +
Sbjct: 744 KAQLNYSVSDKEMLAIIKSLKHWRHYLESTIEPFKILTDHRNLIGRITNESE-------P 796
Query: 893 ETKKLL---LIMSKLNIHIVPYFIPGKCNSLADALSR 926
E K+L L + N I + PG N +ADALSR
Sbjct: 797 ENKRLARWQLFLQDFNFEI--NYRPGSANHIADALSR 831
>sp|P14078|POL_HTL1C Gag-Pro-Pol polyprotein OS=Human T-cell leukemia virus 1 (isolate
Caribbea HS-35 subtype A) GN=gag-pro-pol PE=3 SV=3
Length = 1462
Score = 38.9 bits (89), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 42/94 (44%), Gaps = 9/94 (9%)
Query: 351 YLATIDLSQAYCHIPIARRHRRFLCFLY-------KGTVYQRTCLSFGLASAPQAFAQLS 403
+L TIDL A+ IP+ ++ + + F GT Y L G ++P F
Sbjct: 675 HLQTIDLKDAFFQIPLPKQFQPYFAFTVPQQCNYGPGTRYAWRVLPQGFKNSPTLFEMQL 734
Query: 404 NWVAVLLRERGVRC--LVYLDDFLLASQDSVVLK 435
+ +R+ +C L Y+DD LLAS L+
Sbjct: 735 AHILQPIRQAFPQCTILQYMDDILLASPSHADLQ 768
Score = 35.0 bits (79), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 50/207 (24%), Positives = 87/207 (42%), Gaps = 26/207 (12%)
Query: 606 GDGTMRPVFNLKSLNSYVTTKKFKLINHQKIPLFLQKNDYLATIDLSQAYCHIPIARRHR 665
+GT R + +L++ NS + +L TIDL A+ IP+ ++ +
Sbjct: 636 ANGTWRFIHDLRATNSLTIDLSSSSPGPPDLSSLPTTLAHLQTIDLKDAFFQIPLPKQFQ 695
Query: 666 RFLCFLIPMDMS-------SFRPSLSSPGVCPTI------KLGRRLRERGVRC--LVYLD 710
+ F +P + ++R PT+ + + +R+ +C L Y+D
Sbjct: 696 PYFAFTVPQQCNYGPGTRYAWRVLPQGFKNSPTLFEMQLAHILQPIRQAFPQCTILQYMD 755
Query: 711 DFLLASQDPIVLKNQILQTLQLLTYLGWQVNLKKSQIIPSHRVDYLGISWDTDLLQVRLP 770
D LLAS L+ T+ L G V+ K+Q P + +LG + L
Sbjct: 756 DILLASPSHADLQLLSEATMASLISHGLPVSENKTQQTPG-TIKFLGQIISPN----HLT 810
Query: 771 VDKIP--PLRDRL---QTQALI-ELKW 791
D +P P+R R + QAL+ E++W
Sbjct: 811 YDAVPKVPIRSRWALPELQALLGEIQW 837
>sp|P03362|POL_HTL1A Gag-Pro-Pol polyprotein OS=Human T-cell leukemia virus 1 (strain
Japan ATK-1 subtype A) GN=gag-pro-pol PE=1 SV=3
Length = 1462
Score = 38.5 bits (88), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 40/87 (45%), Gaps = 9/87 (10%)
Query: 351 YLATIDLSQAYCHIPIARRHRRFLCFLY-------KGTVYQRTCLSFGLASAPQAFAQLS 403
+L TIDL A+ IP+ ++ + + F GT Y L G ++P F
Sbjct: 675 HLQTIDLRDAFFQIPLPKQFQPYFAFTVPQQCNYGPGTRYAWKVLPQGFKNSPTLFEMQL 734
Query: 404 NWVAVLLRERGVRC--LVYLDDFLLAS 428
+ +R+ +C L Y+DD LLAS
Sbjct: 735 AHILQPIRQAFPQCTILQYMDDILLAS 761
Score = 33.5 bits (75), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 51/210 (24%), Positives = 90/210 (42%), Gaps = 32/210 (15%)
Query: 606 GDGTMRPVFNLKSLNSYVTTKKFKLINHQKIPLFLQKNDYLATIDLSQAYCHIPIARRHR 665
+GT R + +L++ NS + +L TIDL A+ IP+ ++ +
Sbjct: 636 ANGTWRFIHDLRATNSLTIDLSSSSPGPPDLSSLPTTLAHLQTIDLRDAFFQIPLPKQFQ 695
Query: 666 RFLCFLIPMDMSSFRPSLSSPGVCP----------TIKLG---RRLRERGVRC--LVYLD 710
+ F +P + + + V P ++L + +R+ +C L Y+D
Sbjct: 696 PYFAFTVPQQCNYGPGTRYAWKVLPQGFKNSPTLFEMQLAHILQPIRQAFPQCTILQYMD 755
Query: 711 DFLLAS---QDPIVLKNQILQTLQLLTYLGWQVNLKKSQIIPSHRVDYLGISWDTDLLQV 767
D LLAS +D ++L T+ L G V+ K+Q P + +LG +
Sbjct: 756 DILLASPSHEDLLLLSE---ATMASLISHGLPVSENKTQQTPG-TIKFLGQIISPN---- 807
Query: 768 RLPVDKIP--PLRDRL---QTQALI-ELKW 791
L D +P P+R R + QAL+ E++W
Sbjct: 808 HLTYDAVPTVPIRSRWALPELQALLGEIQW 837
>sp|Q9WC63|POL_HV1S9 Gag-Pol polyprotein OS=Human immunodeficiency virus type 1 group M
subtype J (isolate SE9173) GN=gag-pol PE=3 SV=3
Length = 1432
Score = 37.7 bits (86), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 32/137 (23%), Positives = 58/137 (42%), Gaps = 36/137 (26%)
Query: 612 PVFNLKSLNSYVTTKKFKLINHQKI----------------PLFLQKNDYLATIDLSQAY 655
PVF +K +S TK KL++ +++ P L+K + +D+ AY
Sbjct: 643 PVFAIKKKDS---TKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAY 699
Query: 656 CHIPIARRHRRFLCFLIPMDMSSFRPSL------------SSPGV--CPTIKLGRRLRER 701
+P+ R++ F IP +++ P + SP + C K+ + RER
Sbjct: 700 FSVPLYEDFRKYTAFTIP-SINNETPGIRYQYNVLPQGWKGSPAIFQCSMTKILKPFRER 758
Query: 702 GVRCLV--YLDDFLLAS 716
++ Y+DD + S
Sbjct: 759 NPEIVIYQYMDDLYVGS 775
>sp|Q9WC54|POL_HV1S2 Gag-Pol polyprotein OS=Human immunodeficiency virus type 1 group M
subtype J (isolate SE9280) GN=gag-pol PE=3 SV=3
Length = 1432
Score = 37.7 bits (86), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 32/137 (23%), Positives = 58/137 (42%), Gaps = 36/137 (26%)
Query: 612 PVFNLKSLNSYVTTKKFKLINHQKI----------------PLFLQKNDYLATIDLSQAY 655
PVF +K +S TK KL++ +++ P L+K + +D+ AY
Sbjct: 643 PVFAIKKKDS---TKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAY 699
Query: 656 CHIPIARRHRRFLCFLIPMDMSSFRPSL------------SSPGV--CPTIKLGRRLRER 701
+P+ R++ F IP +++ P + SP + C K+ + RER
Sbjct: 700 FSVPLYEDFRKYTAFTIP-SINNETPGIRYQYNVLPQGWKGSPAIFQCSMTKILKPFRER 758
Query: 702 GVRCLV--YLDDFLLAS 716
++ Y+DD + S
Sbjct: 759 NPEIVIYQYMDDLYVGS 775
>sp|O93215|POL_HV190 Gag-Pol polyprotein OS=Human immunodeficiency virus type 1 group M
subtype H (isolate 90CF056) GN=gag-pol PE=3 SV=4
Length = 1435
Score = 37.7 bits (86), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 22/95 (23%), Positives = 39/95 (41%), Gaps = 9/95 (9%)
Query: 343 PLFLQKNDYLATIDLSQAYCHIPIARRHRRFLCFLY-------KGTVYQRTCLSFGLASA 395
P L+K ++ +D+ AY +P+ + R++ F G YQ L G +
Sbjct: 684 PAGLKKKKSVSVLDVGDAYFSVPLDKEFRKYTAFTIPSINNETPGIRYQYNVLPQGWKGS 743
Query: 396 PQAFAQLSNWVAVLLRERGVRCLV--YLDDFLLAS 428
P F + RE+ ++ Y+DD + S
Sbjct: 744 PAIFQSSMTKILAPFREQNPEMVIYQYMDDLYVGS 778
>sp|P16901|POL_OMVVS Pol polyprotein OS=Ovine maedi visna related virus (strain South
Africa) GN=pol PE=3 SV=1
Length = 1086
Score = 37.7 bits (86), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 27/112 (24%), Positives = 48/112 (42%), Gaps = 15/112 (13%)
Query: 343 PLFLQKNDYLATIDLSQAYCHIPIARRHRRFLCF-------LYKGTVYQRTCLSFGLASA 395
P LQK ++ +D+ AY IP+ +R + CF L T Y L G +
Sbjct: 219 PGGLQKKKHVTILDIGDAYFTIPLYEPYRPYTCFTMLSPNNLGPCTRYYWKVLPQGWKLS 278
Query: 396 PQAF-----AQLSNWVAVLLRERGVRCLVYLDDFLLASQDSVVLKNQIFQTL 442
P + L +W+A + ++ +Y+DD + S ++ +I + L
Sbjct: 279 PSVYQFTMQEILRDWIA---KHPMIQFGIYMDDIYIGSDLDIMKHREIVEEL 327
>sp|Q0R5R2|POL_HTL32 Gag-Pro-Pol polyprotein OS=Human T-cell leukemia virus 3 (strain
2026ND) GN=gag-pro-pol PE=3 SV=3
Length = 1440
Score = 37.0 bits (84), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 40/87 (45%), Gaps = 9/87 (10%)
Query: 351 YLATIDLSQAYCHIPIARRHRRFLCFLY-------KGTVYQRTCLSFGLASAPQAFAQLS 403
+L TIDL+ A+ IP+ + + F GT Y L G ++P F Q
Sbjct: 654 HLRTIDLTDAFFQIPLPTIFQPYFAFTLPQPNNYGPGTRYSWRVLPQGFKNSPTLFEQQL 713
Query: 404 NWVAVLLRERGVRCLV--YLDDFLLAS 428
+ + +R+ L+ Y+DD LLAS
Sbjct: 714 SHILTPVRKTFPNSLIIQYMDDILLAS 740
>sp|Q4U0X6|POL_HTL3P Gag-Pro-Pol polyprotein OS=Human T-cell leukemia virus 3 (strain
Pyl43) GN=gag-pro-pol PE=3 SV=4
Length = 1440
Score = 37.0 bits (84), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 40/87 (45%), Gaps = 9/87 (10%)
Query: 351 YLATIDLSQAYCHIPIARRHRRFLCFLY-------KGTVYQRTCLSFGLASAPQAFAQLS 403
+L TIDL+ A+ IP+ + + F GT Y L G ++P F Q
Sbjct: 654 HLRTIDLTDAFFQIPLPAVFQPYFAFTLPQPNNHGPGTRYSWRVLPQGFKNSPTLFEQQL 713
Query: 404 NWVAVLLRERGVRCLV--YLDDFLLAS 428
+ + +R+ L+ Y+DD LLAS
Sbjct: 714 SHILAPVRKAFPNSLIIQYMDDILLAS 740
>sp|P19199|POL_COYMV Polyprotein P3 OS=Commelina yellow mottle virus PE=3 SV=2
Length = 1886
Score = 37.0 bits (84), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 38/178 (21%), Positives = 71/178 (39%), Gaps = 13/178 (7%)
Query: 286 RPQIASDRSSNGLL-SGNDRGHDIGNLANTGLSIMFNLKSLNSYVTTKKFKLINHQKIPL 344
RP + RS+ ++ SG + G ++FN K LN + ++ L I
Sbjct: 1432 RPSESKHRSTAFIVRSGTEIDPITGKEKKGKERMVFNYKLLNENTESDQYSLPGINTIIS 1491
Query: 345 FLQKNDYLATIDLSQAYCHIPIARRHRRFLCFLYKGTVYQRTCLSFGLASAPQAFAQLSN 404
+ ++ + DL + + + + FL +Y+ + FGL +AP F + +
Sbjct: 1492 KVGRSKIYSKFDLKSGFWQVAMEEESVPWTAFLAGNKLYEWLVMPFGLKNAPAIFQRKMD 1551
Query: 405 WVAVLLRERGVRCL--VYLDDFLLASQDSVVLKNQIFQTLPVNLSGNCSRSGRRSHPT 460
V +G VY+DD L+ S+ + ++ L + C +G PT
Sbjct: 1552 NVF-----KGTEKFIAVYIDDILVFSETAEQHSQHLYTMLQL-----CKENGLILSPT 1599
>sp|P03354|POL_RSVP Gag-Pro-Pol polyprotein OS=Rous sarcoma virus (strain Prague C)
GN=gag-pro-pol PE=1 SV=2
Length = 1603
Score = 36.6 bits (83), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 42/175 (24%), Positives = 72/175 (41%), Gaps = 33/175 (18%)
Query: 612 PVFNL-KSLNSYVTTKKFKLINHQKIPL-----------FLQKNDYLATIDLSQAYCHIP 659
PVF + K+ SY + +N + +P L + L +DL + IP
Sbjct: 765 PVFVIRKASGSYRLLHDLRAVNAKLVPFGAVQQGAPVLSALPRGWPLMVLDLKDCFFSIP 824
Query: 660 IARRHRRFLCFLIPMDMSSFRPS------------LSSPGVCPTIKLGR-----RLRERG 702
+A + R F +P +++ P+ SP +C + +G+ RL+
Sbjct: 825 LAEQDREAFAFTLP-SVNNQAPARRFQWKVLPQGMTCSPTICQLV-VGQVLEPLRLKHPS 882
Query: 703 VRCLVYLDDFLLASQDPIVLKNQILQTLQLLTYLGWQVNLKKSQIIPSHRVDYLG 757
+ L Y+DD LLA+ L+ + + L G+ ++ K Q P V YLG
Sbjct: 883 LCMLHYMDDLLLAASSHDGLEAAGEEVISTLERAGFTISPDKVQREPG--VQYLG 935
>sp|P63136|POK17_HUMAN HERV-K_11q22.1 provirus ancestral Pol protein OS=Homo sapiens PE=3
SV=1
Length = 954
Score = 36.2 bits (82), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 46/98 (46%), Gaps = 19/98 (19%)
Query: 637 PLFLQKNDYLATIDLSQAYCHIPIARRHRRFLCFLIPMDMSSFRPS------------LS 684
P + K+ L IDL + IP+A + F IP +++ P+ L+
Sbjct: 109 PAMIPKDWPLIIIDLKDCFFTIPLAEQDCEKFAFTIPA-INNKEPATRFQWKVLPQGMLN 167
Query: 685 SPGVCPTIKLGRRL---RERGVRCLV--YLDDFLLASQ 717
SP +C T +GR L RE+ C + Y+DD L A++
Sbjct: 168 SPTICQTF-VGRALQPVREKFSDCYIIHYIDDILCAAE 204
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.322 0.136 0.419
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 341,428,354
Number of Sequences: 539616
Number of extensions: 13993124
Number of successful extensions: 31656
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 57
Number of HSP's that attempted gapping in prelim test: 31472
Number of HSP's gapped (non-prelim): 213
length of query: 960
length of database: 191,569,459
effective HSP length: 127
effective length of query: 833
effective length of database: 123,038,227
effective search space: 102490843091
effective search space used: 102490843091
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 66 (30.0 bits)