Query psy15121
Match_columns 960
No_of_seqs 690 out of 3513
Neff 7.8
Searched_HMMs 29240
Date Fri Aug 16 21:09:19 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy15121.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/15121hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1rw3_A POL polyprotein; RNA an 100.0 2E-52 6.9E-57 488.8 5.9 298 604-907 83-452 (455)
2 2zd1_B P51 RT; P51/P66, hetero 100.0 1.3E-46 4.4E-51 434.3 9.4 269 604-881 64-405 (428)
3 2zd1_A Reverse transcriptase/r 100.0 9.1E-45 3.1E-49 433.8 19.9 251 604-863 66-386 (557)
4 1mu2_A HIV-2 RT; HIV-2 reverse 100.0 6.1E-43 2.1E-47 417.8 16.0 216 604-827 64-344 (555)
5 3fsi_A RT, reverse transcripta 100.0 1.9E-40 6.4E-45 357.9 8.2 223 240-490 20-254 (255)
6 1rw3_A POL polyprotein; RNA an 100.0 2.8E-40 9.6E-45 386.1 3.5 260 243-531 27-299 (455)
7 2zd1_A Reverse transcriptase/r 100.0 3.5E-38 1.2E-42 376.9 7.6 260 237-531 2-277 (557)
8 2zd1_B P51 RT; P51/P66, hetero 100.0 1.6E-38 5.6E-43 366.7 1.9 254 243-531 6-275 (428)
9 1mu2_A HIV-2 RT; HIV-2 reverse 100.0 4.6E-38 1.6E-42 375.7 3.8 252 243-530 6-274 (555)
10 3fsi_A RT, reverse transcripta 100.0 1.6E-35 5.3E-40 319.5 13.1 159 604-765 79-255 (255)
11 3hst_B Protein RV2228C/MT2287; 98.7 1.7E-08 5.9E-13 97.6 7.6 118 808-927 3-129 (141)
12 2ehg_A Ribonuclease HI; RNAse 98.7 1.1E-08 3.9E-13 100.0 6.3 116 809-927 2-130 (149)
13 3u3g_D Ribonuclease H, RNAse H 98.7 2.1E-08 7.1E-13 96.7 6.5 118 807-926 2-132 (140)
14 3hst_B Protein RV2228C/MT2287; 98.5 9.8E-08 3.3E-12 92.2 7.3 118 62-181 3-129 (141)
15 3u3g_D Ribonuclease H, RNAse H 98.5 1.4E-07 5E-12 90.8 7.3 119 62-181 3-133 (140)
16 2e4l_A Ribonuclease HI, RNAse 98.5 1.4E-07 4.6E-12 93.3 6.8 117 807-928 5-142 (158)
17 3h08_A RNH (ribonuclease H); R 98.5 1E-07 3.4E-12 92.9 5.3 115 807-926 3-139 (146)
18 2ehg_A Ribonuclease HI; RNAse 98.5 1.3E-07 4.3E-12 92.6 5.8 115 64-181 3-130 (149)
19 1jl1_A Ribonuclease HI; RNAse 98.4 1.9E-07 6.6E-12 91.9 6.7 117 807-928 3-140 (155)
20 1ril_A Ribonuclease H; hydrola 98.4 8.4E-08 2.9E-12 95.5 4.1 117 807-928 7-145 (166)
21 3p1g_A Xenotropic murine leuke 98.4 4E-07 1.4E-11 90.3 8.8 116 804-927 19-152 (165)
22 2qkb_A Ribonuclease H1, HS-RNA 98.4 3.3E-07 1.1E-11 90.1 6.2 115 807-927 6-147 (154)
23 3qio_A GAG-POL polyprotein; RN 98.3 7.2E-07 2.5E-11 87.1 8.1 114 807-929 11-145 (150)
24 2lsn_A Reverse transcriptase; 98.3 4.9E-07 1.7E-11 89.5 4.9 115 805-926 4-158 (165)
25 2e4l_A Ribonuclease HI, RNAse 98.2 2.6E-06 8.8E-11 84.0 9.2 116 62-182 6-142 (158)
26 1ril_A Ribonuclease H; hydrola 98.2 2E-06 6.9E-11 85.5 8.4 117 61-182 7-145 (166)
27 2kq2_A Ribonuclease H-related 98.2 1.8E-07 6E-12 91.3 0.3 118 805-928 3-134 (147)
28 3h08_A RNH (ribonuclease H); R 98.2 3E-06 1E-10 82.4 8.0 115 62-181 4-140 (146)
29 1jl1_A Ribonuclease HI; RNAse 98.2 4.1E-06 1.4E-10 82.3 8.8 116 62-182 4-140 (155)
30 3qio_A GAG-POL polyprotein; RN 98.1 8.3E-06 2.8E-10 79.6 10.1 115 59-182 9-144 (150)
31 2qkb_A Ribonuclease H1, HS-RNA 98.1 4.6E-06 1.6E-10 81.9 8.1 117 61-181 6-147 (154)
32 3p1g_A Xenotropic murine leuke 98.1 7.2E-06 2.5E-10 81.2 9.6 117 59-181 20-152 (165)
33 2lsn_A Reverse transcriptase; 97.9 2E-05 6.7E-10 78.0 7.2 122 59-181 4-159 (165)
34 1zbf_A Ribonuclease H-related 97.7 3.5E-05 1.2E-09 74.1 6.0 109 807-923 10-139 (142)
35 2kq2_A Ribonuclease H-related 97.7 4.8E-06 1.6E-10 81.0 -0.5 117 60-182 4-134 (147)
36 4htu_A Ribonuclease H, RNAse H 97.4 0.00017 5.8E-09 68.1 6.3 97 809-907 6-115 (134)
37 1zbf_A Ribonuclease H-related 97.2 0.00023 7.8E-09 68.4 4.8 98 63-162 12-122 (142)
38 4htu_A Ribonuclease H, RNAse H 96.7 0.0016 5.6E-08 61.4 5.4 95 64-160 7-114 (134)
39 3kyl_A Telomerase reverse tran 94.0 0.074 2.5E-06 60.1 7.0 128 638-771 239-405 (596)
40 3kyl_A Telomerase reverse tran 75.5 3.8 0.00013 46.6 6.5 116 339-464 230-375 (596)
41 2pqr_C WD repeat protein YKR03 22.3 13 0.00043 29.4 -0.9 11 4-14 26-36 (64)
No 1
>1rw3_A POL polyprotein; RNA and DNA dependent DNA polymerase, reverse transcriptase, transferase, replication; 3.00A {Moloney murine leukemia virus} SCOP: e.8.1.2
Probab=100.00 E-value=2e-52 Score=488.81 Aligned_cols=298 Identities=16% Similarity=0.193 Sum_probs=252.8
Q ss_pred ccC-CCCeeEEeecccccccccCCCCcCCChhhHhhhcC-CCcEEEeeehhhccCcccccccccccceee----------
Q psy15121 604 LYG-DGTMRPVFNLKSLNSYVTTKKFKLINHQKIPLFLQ-KNDYLATIDLSQAYCHIPIARRHRRFLCFL---------- 671 (960)
Q Consensus 604 ~kk-~gk~R~~vD~r~LN~~~~~~~~plp~i~~~l~~l~-~~~~fs~lDl~~ay~qI~l~~~d~~~taF~---------- 671 (960)
+|| +|+||+|+|||.||+.|.++++|+|++++++++++ |+++|+++|+++|||||+|+++|+++|||+
T Consensus 83 ~Kk~~g~~R~~~D~r~LN~~~~~~~~~lp~~~~ll~~l~~~~~~~s~lDl~~~y~qi~l~~~d~~~taF~~~~p~~~~~g 162 (455)
T 1rw3_A 83 KKPGTNDYRPVQDLREVNKRVEDIHPTVPNPYNLLSGLPPSHQWYTVLDLKDAFFCLRLHPTSQPLFAFEWRDPEMGISG 162 (455)
T ss_dssp CCSSSSCCCCEECTHHHHHTBCCCCCCCCCHHHHHTTCCTTCCEEEEEEBTTGGGGSBBCSTTSGGGCEEECTTSSSCCE
T ss_pred eccCCCcEEEchhHHHHHhhccCCCCCCCCHHHHhhhhccCCceEEecchhhhheeEeccccccceeEEeecCCCCCCCc
Confidence 466 79999999999999999999999999999999997 999999999999999999999999999994
Q ss_pred -eeecccccCCCCccccchhhHHHhhHhhhc-----CCeEEEEecceEEecCCHHHHHHHHHHHHHHHHHcCCeecccCc
Q psy15121 672 -IPMDMSSFRPSLSSPGVCPTIKLGRRLRER-----GVRCLVYLDDFLLASQDPIVLKNQILQTLQLLTYLGWQVNLKKS 745 (960)
Q Consensus 672 -y~~~rlPFG~l~~ap~~f~~~~i~~~l~~~-----~~~v~~YvDDili~s~s~eeh~~~l~~vl~~l~~~Gl~l~~~K~ 745 (960)
|+|+||||| ++|||++|| +.|..++.+. +..+.+|+|||+|++++.++|.++++.++++|+++|+.+|++||
T Consensus 163 ~y~~~~mpfG-l~naP~~fq-~~m~~~l~~~~~~~~~~~v~~YvDDili~s~~~~e~~~~l~~v~~~l~~~gl~l~~~K~ 240 (455)
T 1rw3_A 163 QLTWTRLPQG-FKNSPTLFD-EALHRDLADFRIQHPDLILLQYVDDLLLAATSELDCQQGTRALLQTLGNLGYRASAKKA 240 (455)
T ss_dssp EEEESBCCSS-CTTHHHHHH-HHHHHHHHHHHHTCTTCEEEEETTEEEEEESSHHHHHHHHHHHHHHHHHHTCCBCGGGC
T ss_pred eEEEEecCCC-CCCcHHHHH-HHHHHHHHHhhhhCCCceEEEEcCCEEEecCCHHHHHHHHHHHHHHHHHcCCccCccch
Confidence 999999999 999999999 6888888775 67899999999999999999999999999999999999999999
Q ss_pred cccccceEEEEEEEEcCCCcEEec---------CC---------------------CCCCCccccchhhHHH--Hhhhhh
Q psy15121 746 QIIPSHRVDYLGISWDTDLLQVRL---------PV---------------------DKIPPLRDRLQTQALI--ELKWFY 793 (960)
Q Consensus 746 ~~~~~~~~~fLG~~i~~~g~~~~~---------p~---------------------~k~~~l~~~L~~~l~~--~l~w~~ 793 (960)
+|..+ +++||||+|+.+|+.+.. |. +++..+.++|...+++ .+.|..
T Consensus 241 ~f~~~-~~~fLG~~i~~~gi~~~~~kv~~i~~~~~p~t~k~l~~flG~~~y~r~fi~~~~~~~~pL~~llkk~~~~~W~~ 319 (455)
T 1rw3_A 241 QICQK-QVKYLGYLLKEGQRWLTEARKETVMGQPTPKTPRQLREFLGTAGFCRLWIPGFAEMAAPLYPLTKTGTLFNWGP 319 (455)
T ss_dssp CCSBS-SCEETTEEESSSEECCCTTCCCCCCCCCTTTHHHHHHHTTTTTCCCSSCCCCCGGGCCTTCC--------CCCC
T ss_pred hhhcc-ceeEeeeeccCCeeEEChhHhhhhccCCCCCCHHHhhhhcccchHHHHHHhhhhhhcccHHHHhcCCCCcCchH
Confidence 99885 999999999999887621 11 1223333444555544 477877
Q ss_pred hhhcCCC----------CC--CCCCCceEEEeCCCccceeeeEeee---------eeccccccccccCChhHHHHHHHHH
Q psy15121 794 HNLTGFT----------PL--HPPVPRTFMSTDASDVGWGAMVGNV---------SVQGVWTQAQRSWHINLKELFTVRA 852 (960)
Q Consensus 794 ~~l~~f~----------~l--~~p~~~~~l~tDAS~~g~GavL~q~---------~~S~~l~~~e~~ysi~~kEllAiv~ 852 (960)
++.++|. .+ +++..++.++||||+.|+||||.|. |.|++++++|++|+++++|++|+++
T Consensus 320 ~~~~af~~lK~~l~~~pvL~~p~~~~~~~l~~DAS~~~~gavL~q~~~~~~~~i~y~Sk~l~~~e~~ys~~ekEllAi~~ 399 (455)
T 1rw3_A 320 DQQKAYQEIKQALLTAPALGLPDLTKPFELFVDEKQGYAKGVLTQKLGPWRRPVAYLSKKLDPVAAGWPPCLRMVAAIAV 399 (455)
T ss_dssp CCSSSCCHHHHHTCSSCCSCCSSSCCTTSCEEEEEECSSSBEECCBCTTTTCCCCCCCBCSCSSCSSSCCSSHHHHHHHH
T ss_pred HHHHHHHHHHHHhhcCcccccCCCCCcEEEEEeccCCcceeEEEEecCCcEEEEEEEcccCCccccccchHHHHHHHHHH
Confidence 7766663 33 4556889999999999999999985 8999999999999999999999999
Q ss_pred HHHhCccccCCCeEEEEcCCHHHHHHHHhcCCCCChhHHHHHHHHHHHHh-ccCcE
Q psy15121 853 AISSNPSLVANHTVVLQSDNKTVIAYIRKQGGLRSHALLAETKKLLLIMS-KLNIH 907 (960)
Q Consensus 853 Al~~~~~~L~g~~~~I~TDh~~l~~~l~~~~~~~~~~l~~~~~r~~~~l~-~~~~~ 907 (960)
|+++|++|+.|++|+|+|||+ +.++++++.... -.+.++.||..+|+ .|+++
T Consensus 400 a~~~~~~yl~g~~~~v~tDh~-~~~~l~~~~~~~--~~~~Rl~rW~~~L~e~~~i~ 452 (455)
T 1rw3_A 400 LTKDAGKLTMGQPLVIKAPHA-VEALVKQPPDRW--LSNARMTHYQALLLDTDRVQ 452 (455)
T ss_dssp HHHHHHGGGCSSCEEEECSSC-TTTTSSSTTTTT--CCCCCCSCCCCCCCCCCSSS
T ss_pred HHHHHHHHcCCCcEEEEecCh-HHHHhCCCcccc--ccchHHHHHHHHhCcCCCeE
Confidence 999999999999999999998 667777542110 12346678999998 58876
No 2
>2zd1_B P51 RT; P51/P66, hetero dimer, NNRTI, nonnucleoside inhibitor, AIDS, HIV, rilpivirine, diarylpyrimidine, DAPY, DNA recombination; HET: T27; 1.80A {Human immunodeficiency virus 1} SCOP: e.8.1.2 PDB: 2ykm_B* 2ykn_B* 2ze2_B* 3bgr_B* 3ig1_B* 3irx_B* 3is9_B* 3qo9_B* 3v4i_B* 3v6d_B* 3v81_B* 3klf_B* 3kk1_B* 3kjv_B* 3kk2_B* 3kk3_B* 2be2_B* 1n5y_B* 1bqm_B* 1n6q_B* ...
Probab=100.00 E-value=1.3e-46 Score=434.34 Aligned_cols=269 Identities=16% Similarity=0.175 Sum_probs=219.1
Q ss_pred ccCCC-CeeEEeecccccccccC---CCCcCCChhhHhhhcCCCcEEEeeehhhccCcccccccccccceee--------
Q psy15121 604 LYGDG-TMRPVFNLKSLNSYVTT---KKFKLINHQKIPLFLQKNDYLATIDLSQAYCHIPIARRHRRFLCFL-------- 671 (960)
Q Consensus 604 ~kk~g-k~R~~vD~r~LN~~~~~---~~~plp~i~~~l~~l~~~~~fs~lDl~~ay~qI~l~~~d~~~taF~-------- 671 (960)
+|||| |||+|+|||.||+.|.+ +.||+|.+++ ++|+++|+++|+++|||||+|+++|+++|||+
T Consensus 64 ~Kk~g~k~R~~vD~r~LN~~t~~~~~~~~plP~i~~----l~~~~~~s~lDl~~gy~qI~l~~~d~~~taF~~p~~~~~t 139 (428)
T 2zd1_B 64 KKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAG----LKKKKSVTVLDVGDAYFSVPLDEDFRKYTAFTIPSINNET 139 (428)
T ss_dssp CCTTCSSCEEEECTHHHHHHBCCCCCTTSCCCCCTT----GGGSSEEEEEECGGGGGGSBCCTTTGGGGCEEECCGGGCS
T ss_pred cCCCCCceEEEEechHhcCcccccccccCCCCCchh----ccccceEEEeeccCceeeEEcCccccceeEEEeecCCCCC
Confidence 57887 79999999999999999 8999999986 58999999999999999999999999999995
Q ss_pred ----eeecccccCCCCccccchhhHHHhhHhhhc-----CCeEEEEecceEEecCC-HHHHHHHHHHHHHHHHHcCCeec
Q psy15121 672 ----IPMDMSSFRPSLSSPGVCPTIKLGRRLRER-----GVRCLVYLDDFLLASQD-PIVLKNQILQTLQLLTYLGWQVN 741 (960)
Q Consensus 672 ----y~~~rlPFG~l~~ap~~f~~~~i~~~l~~~-----~~~v~~YvDDili~s~s-~eeh~~~l~~vl~~l~~~Gl~l~ 741 (960)
|+|+||||| ++|||++|| +.|..++.++ +..+.+|+|||+|++++ .++|..+++.++++|+++|+.+|
T Consensus 140 ~~g~y~~~vmPfG-l~nsPa~fq-~~m~~il~~~~~~~~~~~v~vY~DDIlI~s~~~~~eh~~~l~~v~~~l~~~gL~l~ 217 (428)
T 2zd1_B 140 PGIRYQYNVLPQG-WKGSPAIFQ-SSMTKILEPFKKQNPDIVIYQYMDDLYVGSDLEIGQHRTKIEELRQHLLRWGLTTP 217 (428)
T ss_dssp CCEEEEESBCCTT-CTHHHHHHH-HHHHHHHHHHHHHCTTCEEEEETTEEEEEECSCHHHHHHHHHHHHHHHHHHHC---
T ss_pred CCceEEEEeeCCC-CcchHHHHH-HHHHHHHHHHhhcCCCceEEEEecceEEecCCcHHHHHHHHHHHHHHHHHhCCccC
Confidence 999999999 999999999 6888887765 33699999999999995 79999999999999999999999
Q ss_pred ccCccccccceEEEEEEEEcCCCcEEe---cCC-------------------CCCCCc--cccchhhHHH------Hhhh
Q psy15121 742 LKKSQIIPSHRVDYLGISWDTDLLQVR---LPV-------------------DKIPPL--RDRLQTQALI------ELKW 791 (960)
Q Consensus 742 ~~K~~~~~~~~~~fLG~~i~~~g~~~~---~p~-------------------~k~~~l--~~~L~~~l~~------~l~w 791 (960)
++||++.. +++||||+++.+|+++. +|. ++|.+. .++|++.+++ .+.|
T Consensus 218 ~~Kc~~~~--~~~fLG~~i~~~~i~~~~~ki~~~~~~t~k~lr~flG~~~yyrrFi~~~s~~pL~~llkk~~~~~~~~~W 295 (428)
T 2zd1_B 218 DKKHQKEP--PFLWMGYELHPDKWTVQPIVLPEKDSWTVNDIQKLVGKLNWASQIYPGIKVRQLSKLLRGTKALTEVIPL 295 (428)
T ss_dssp -----------CTTCCEEECGGGCCCCCCCCCCCSSEEHHHHHHHHHHHHHHTTTCTTCCCHHHHHTTCSCCCTTCEECC
T ss_pred hhHccccc--eEEEeccEecCCceEecccccccccccCHHHHHHHhhhHHHHHHhcCCccHHHHHHHHccCCCCCCeecC
Confidence 99999843 79999999999998763 121 112221 2344444443 3778
Q ss_pred hhhhhcCC----------CCC--CCCCCceEEEeCCCcc-ceeeeEeee----eeccccccccccCChhHHHHHH-HHHH
Q psy15121 792 FYHNLTGF----------TPL--HPPVPRTFMSTDASDV-GWGAMVGNV----SVQGVWTQAQRSWHINLKELFT-VRAA 853 (960)
Q Consensus 792 ~~~~l~~f----------~~l--~~p~~~~~l~tDAS~~-g~GavL~q~----~~S~~l~~~e~~ysi~~kEllA-iv~A 853 (960)
..++..+| +.+ ++|+.+++++||||+. +||+++.|. |.|++++ +|++|+++++|++| ++.|
T Consensus 296 t~~~~~af~~lK~~L~~~p~l~~pd~~~~~~l~~das~~g~~g~vl~q~~~~~~~s~~~~-~~~~y~~~~~e~la~vv~a 374 (428)
T 2zd1_B 296 TEEAELELAENREILKEPVHGVYYDPSKDLIAEIQKQGQGQWTYQIYQEPFKNLKTGKYA-RMRGAHTNDVKQLTEAVQK 374 (428)
T ss_dssp CHHHHHHHHHHHHHTTSCCTTCCCCTTSCCEEEEEEEETTEEEEEEESSTTCEEEEEEEE-CCSSCTTCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHhcchhccccCCCCCEEEEEecCCCCcEEEEEecCCCceeeecccc-hhhhcccchHHHHHHHHHH
Confidence 77776655 233 5677999999999996 569999985 8999999 99999999999999 9999
Q ss_pred HHhCccccCCC---eEEEEcCCHHHHHHHHh
Q psy15121 854 ISSNPSLVANH---TVVLQSDNKTVIAYIRK 881 (960)
Q Consensus 854 l~~~~~~L~g~---~~~I~TDh~~l~~~l~~ 881 (960)
+++|++||.|+ .++++|||+.+.++.+.
T Consensus 375 l~~~r~yl~G~~~~~~i~~td~~~~~~~~~~ 405 (428)
T 2zd1_B 375 ITTESIVIWGKTPKFKLPIQKETWETWWTEY 405 (428)
T ss_dssp HHHHHHHHHSSCCEEEESSCHHHHHHHHHHH
T ss_pred hhccceEEECCCCcEECCccHHHHHHHHHhc
Confidence 99999999775 57789999999877764
No 3
>2zd1_A Reverse transcriptase/ribonuclease H; P51/P66, hetero dimer, NNRTI, nonnucleoside inhibitor, AIDS, HIV, rilpivirine, diarylpyrimidine, DAPY, DNA recombination; HET: T27; 1.80A {Human immunodeficiency virus 1} PDB: 3is9_A* 3irx_A* 2ze2_A* 3bgr_A* 3qlh_A* 3klf_A* 3qo9_A* 1dlo_A 1bqm_A 2be2_A* 1s6q_A* 1s6p_A* 1s9g_A* 1suq_A* 2b5j_A* 2b6a_A* 2ban_A* 1s9e_A* 1hni_A* 1hnv_A* ...
Probab=100.00 E-value=9.1e-45 Score=433.80 Aligned_cols=251 Identities=18% Similarity=0.221 Sum_probs=211.4
Q ss_pred ccCCC-CeeEEeecccccccccC---CCCcCCChhhHhhhcCCCcEEEeeehhhccCcccccccccccceee--------
Q psy15121 604 LYGDG-TMRPVFNLKSLNSYVTT---KKFKLINHQKIPLFLQKNDYLATIDLSQAYCHIPIARRHRRFLCFL-------- 671 (960)
Q Consensus 604 ~kk~g-k~R~~vD~r~LN~~~~~---~~~plp~i~~~l~~l~~~~~fs~lDl~~ay~qI~l~~~d~~~taF~-------- 671 (960)
+|||| |||+|+|||.||+.|.+ +.||+|.+++ ++|+++|+++|+++|||||+|+++|+++|||+
T Consensus 66 ~Kk~g~k~R~~vD~r~LN~~t~~~~~~~~plP~i~~----l~~~~~~s~lDl~~~y~qi~l~~~d~~~taF~~p~~~~~t 141 (557)
T 2zd1_A 66 KKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAG----LKKKKSVTVLDVGDAYFSVPLDEDFRKYTAFTIPSINNET 141 (557)
T ss_dssp ECSSCSCEEEEECCHHHHHHBCCCCCTTSSCCCGGG----SCCCSEEEEEECTTGGGGSBCCTTTGGGGCEEECCGGGCS
T ss_pred ECCCCCceEEEEEhHHHhhhccccccccCCCCCchh----hcCCCeeEEehhhhhhheeEcCccccceeEEEeecCCCCC
Confidence 58899 99999999999999999 9999999987 48999999999999999999999999999995
Q ss_pred ----eeecccccCCCCccccchhhHHHhhHhhhc-----CCeEEEEecceEEecC-CHHHHHHHHHHHHHHHHHcCCeec
Q psy15121 672 ----IPMDMSSFRPSLSSPGVCPTIKLGRRLRER-----GVRCLVYLDDFLLASQ-DPIVLKNQILQTLQLLTYLGWQVN 741 (960)
Q Consensus 672 ----y~~~rlPFG~l~~ap~~f~~~~i~~~l~~~-----~~~v~~YvDDili~s~-s~eeh~~~l~~vl~~l~~~Gl~l~ 741 (960)
|+|+||||| ++|||++|| +.|..++.++ +..+.+|+|||+|+++ +.++|..+++.++++|+++|+.+|
T Consensus 142 ~~g~y~~~~mPfG-l~nap~~fq-~~m~~il~~~~~~~~~~~v~~Y~DDIli~s~~~~~eh~~~l~~v~~~l~~~gl~l~ 219 (557)
T 2zd1_A 142 PGIRYQYNVLPQG-WKGSPAIFQ-SSMTKILEPFAAQNPDIVIYQYMDDLYVGSDLEIGQHRTKIEELRQHLLRWGLTTP 219 (557)
T ss_dssp CCEEEEESBCCTT-CTTHHHHHH-HHHHHHHHHHHHTCTTEEEEEETTEEEEEECSCHHHHHHHHHHHHHHHHTTTCCCC
T ss_pred CceEEEEEeeCCC-CCCHHHHHH-HHHHHHHHHhhhcCCCceEEEEecCEEEecCchHHHHHHHHHHHHHHHHHcCCccC
Confidence 999999999 999999999 6888888765 2259999999999999 699999999999999999999999
Q ss_pred ccCccccccceEEEEEEEEcCCCcEEe---cCC-------------------CCCCCcc--ccchhhHHH------Hhhh
Q psy15121 742 LKKSQIIPSHRVDYLGISWDTDLLQVR---LPV-------------------DKIPPLR--DRLQTQALI------ELKW 791 (960)
Q Consensus 742 ~~K~~~~~~~~~~fLG~~i~~~g~~~~---~p~-------------------~k~~~l~--~~L~~~l~~------~l~w 791 (960)
++||+|.. +++||||+|+.+|+++. +|. ++|.+.. ++|...+++ .+.|
T Consensus 220 ~~Kc~f~~--~~~fLG~~i~~~gi~~~~~k~~~~~~~t~k~lr~flG~~~~yrrfi~~~~~~pl~~ll~~~~~~~~~~~W 297 (557)
T 2zd1_A 220 DKKHQKEP--PFLWMGYELHPDKWTVQPIVLPEKDSWTVNDIQKLVGKLNWASQIYPGIKVRQLSKLLRGTKALTEVIPL 297 (557)
T ss_dssp CSCCSCCS--SEEETTEEECSSCEEESCCCCCCCSCEEHHHHHHHHHHHHHHTTTSTTCCCHHHHGGGTTCCCTTCEECC
T ss_pred hhhcCCCC--ceEEeeEEEccCcEEEcceecccccCCCHHHHHHHhhHHHhhhhhccchhHHHHHHHhcccCCCCCceec
Confidence 99999843 89999999999999883 221 1222222 244444433 4778
Q ss_pred hhhhhcCC----------CCC--CCCCCceEEEeCCCccc-eeeeEeee----eeccccccccccCChhHHHHHH-HHHH
Q psy15121 792 FYHNLTGF----------TPL--HPPVPRTFMSTDASDVG-WGAMVGNV----SVQGVWTQAQRSWHINLKELFT-VRAA 853 (960)
Q Consensus 792 ~~~~l~~f----------~~l--~~p~~~~~l~tDAS~~g-~GavL~q~----~~S~~l~~~e~~ysi~~kEllA-iv~A 853 (960)
..++.++| +.+ ++|..+|+++||||+.| +|++|.|+ +.+..+. +|++|+++++|++| ++.+
T Consensus 298 t~~~~~af~~lK~~L~~~p~L~~pd~~~~~~l~~das~~g~~g~vl~q~~~~~~~~~~~~-~~~~y~~~e~e~la~vv~~ 376 (557)
T 2zd1_A 298 TEEAELELAENREILKEPVHGVYYDPSKDLIAEIQKQGQGQWTYQIYQEPFKNLKTGKYA-RMRGAHTNDVKQLTEAVQK 376 (557)
T ss_dssp CHHHHHHHHHHHHHTSSCCCBCCCCTTSCCEEEEEEEETTEEEEEEEEETTEEEEEEEEE-CCSCSEECHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHhCccceeecCCCCCEEEEEecCCCCcEEEEEecCCCceeeeeecc-cccccCCChHHHHHHHHHH
Confidence 77766555 333 56679999999999987 59999995 5555666 79999999999999 9999
Q ss_pred HHhCccccCC
Q psy15121 854 ISSNPSLVAN 863 (960)
Q Consensus 854 l~~~~~~L~g 863 (960)
+++|++|+.|
T Consensus 377 l~~~~~~l~g 386 (557)
T 2zd1_A 377 ITTESIVIWG 386 (557)
T ss_dssp HHHHHHHHHS
T ss_pred hhhhheEEeC
Confidence 9988777643
No 4
>1mu2_A HIV-2 RT; HIV-2 reverse transcriptase, AIDS, polymerase, drug design, transferase; 2.35A {Human immunodeficiency virus 2} SCOP: c.55.3.1 e.8.1.2 PDB: 1mu2_B
Probab=100.00 E-value=6.1e-43 Score=417.83 Aligned_cols=216 Identities=17% Similarity=0.214 Sum_probs=179.0
Q ss_pred ccCCC-CeeEEeecccccccccCC---CCcCCChhhHhhhcCCCcEEEeeehhhccCcccccccccccceee--------
Q psy15121 604 LYGDG-TMRPVFNLKSLNSYVTTK---KFKLINHQKIPLFLQKNDYLATIDLSQAYCHIPIARRHRRFLCFL-------- 671 (960)
Q Consensus 604 ~kk~g-k~R~~vD~r~LN~~~~~~---~~plp~i~~~l~~l~~~~~fs~lDl~~ay~qI~l~~~d~~~taF~-------- 671 (960)
+|||| |||+|+|||.||+.|.++ .||+|.+++ ++|+++|+++|+++|||||+|+++|+++|||+
T Consensus 64 ~Kk~g~k~R~~vD~r~LN~~t~~~~~~~~~lP~~~~----l~~~~~~s~lDl~~~y~qI~l~~~d~~~taF~~p~~~~~~ 139 (555)
T 1mu2_A 64 KKKDKNKWRMLIDFRELNKVTQDFTEIQLGIPHPAG----LAKKRRITVLDVGDAYFSIPLHEDFRPYTAFTLPSVNNAE 139 (555)
T ss_dssp CCCC----CEEECTHHHHHHBCCCCCCCCSCCCGGG----SBCCSEEEEEECBSSGGGSBCCTTTGGGGCEEC-------
T ss_pred cCCCCCceEEEEehHHhhhhCcccccccCCCCchhh----cCCCceEEEehhHhcceEEEeccCceeeeEEEeecCCCCC
Confidence 57887 799999999999999998 999999876 69999999999999999999999999999996
Q ss_pred ----eeecccccCCCCccccchhhHHHhhHhhhc-----CCeEEEEecceEEecC-CHHHHHHHHHHHHHHHHHcCCeec
Q psy15121 672 ----IPMDMSSFRPSLSSPGVCPTIKLGRRLRER-----GVRCLVYLDDFLLASQ-DPIVLKNQILQTLQLLTYLGWQVN 741 (960)
Q Consensus 672 ----y~~~rlPFG~l~~ap~~f~~~~i~~~l~~~-----~~~v~~YvDDili~s~-s~eeh~~~l~~vl~~l~~~Gl~l~ 741 (960)
|+|+||||| ++|||++|| +.|..++.++ +..|.+|||||+|+|+ +.++|..+++.|+++|+++|+.+|
T Consensus 140 ~~g~y~~~~mPfG-l~napa~fq-~~m~~il~~~~~~~~~~~v~~Y~DDIli~s~~~~~eh~~~l~~v~~~l~~~gl~l~ 217 (555)
T 1mu2_A 140 PGKRYIYKVLPQG-WKGSPAIFQ-HTMRQVLEPFRKANKDVIIIQYMDDILIASDRTDLEHDRVVLQLKELLNGLGFSTP 217 (555)
T ss_dssp --CEEEESBCCTT-CTTHHHHHH-HHHHHHHHHHHHHCTTSEEEEETTEEEEEECSCHHHHHHHHHHHHHHHHHTTCBCC
T ss_pred CceEEEEEEeCCC-CCCcHHHHH-HHHHHHHHHHHhhCCCcEEEEEecceEEecCCCHHHHHHHHHHHHHHHHHcCCccC
Confidence 999999999 999999999 7888888775 3469999999999999 799999999999999999999999
Q ss_pred ccCccccccceEEEEEEEEcCCCcEEecC-CCC---------------------CCCc--cccchhhHH------HHhhh
Q psy15121 742 LKKSQIIPSHRVDYLGISWDTDLLQVRLP-VDK---------------------IPPL--RDRLQTQAL------IELKW 791 (960)
Q Consensus 742 ~~K~~~~~~~~~~fLG~~i~~~g~~~~~p-~~k---------------------~~~l--~~~L~~~l~------~~l~w 791 (960)
++||. .. .+++||||+|+.+|+++..- .+. |.+. .++|+..++ ..+.|
T Consensus 218 ~~K~~-~~-~~~~fLG~~i~~~gi~~~~~ki~~i~~~t~k~lr~flG~~~~~rrfi~~~~~~pL~~llk~~~~~~~~~~w 295 (555)
T 1mu2_A 218 DEKFQ-KD-PPYHWMGYELWPTKWKLQKIQLPQKEIWTVNDIQKLVGVLNWAAQLYPGIKTKHLCRLISGKMTLTEEVQW 295 (555)
T ss_dssp STTEE-CS-SSEEETTEEECSSEEEECCCCCCCCSSCBHHHHHHHHHHHHHHHHHSTTCCCHHHHTTSCSSSCTTCBCCC
T ss_pred HHHhc-cC-CceeEEeEEEeCCceeccccccCcCCCCCHHHHHhHhhhhhhhhhccCccchHHHHHHhccCCCCCCcccC
Confidence 99995 55 49999999999999987321 111 0000 123333332 35778
Q ss_pred hhhhhcCCC----------CC--CCCCCceEEEeCCCccc-eeeeEeee
Q psy15121 792 FYHNLTGFT----------PL--HPPVPRTFMSTDASDVG-WGAMVGNV 827 (960)
Q Consensus 792 ~~~~l~~f~----------~l--~~p~~~~~l~tDAS~~g-~GavL~q~ 827 (960)
..++.++|. .+ ++|..+|+++||||+.| +|+||.|.
T Consensus 296 t~~~~~af~~lK~~L~~~p~L~~p~~~~~~~l~~das~~ga~g~vl~Q~ 344 (555)
T 1mu2_A 296 TELAEAELEENRIILSQEQEGHYYQEEKELEATVQKDQDNQWTYKIHQE 344 (555)
T ss_dssp CHHHHHHHHHHHHHHSCCEEEECBCTTSCCEEEEEECSSSCEEEEEEET
T ss_pred CHHHHHHHHHHHHHHhhCccccccCCCCCEEEEEecCCCCcEEEEEeeC
Confidence 877766653 22 67779999999999996 99999984
No 5
>3fsi_A RT, reverse transcriptase domain; transferase/DNA MMLV RT, protein-DNA complex, drug-DNA complex; HET: OWL; 1.75A {Moloney murine leukemia virus} SCOP: e.8.1.2 PDB: 1d1u_A 1n4l_A* 1ztt_A 2fjv_A* 2fjw_A 2fjx_A* 2fvp_A 2fvq_A 2fvr_A 2fvs_A 2r2r_A* 2r2s_A* 2r2t_A* 2r2u_A* 1ztw_A* 1i6j_A 1qaj_A* 1d0e_A* 1nnd_A 1mml_A ...
Probab=100.00 E-value=1.9e-40 Score=357.92 Aligned_cols=223 Identities=12% Similarity=0.085 Sum_probs=189.1
Q ss_pred CCCCcchhhhhccCCCcccCCCchh--hHhHHHHHhhcCCCCCCCCCCCCeeeccCCCCCcccCCCCCCcccccCC-CcE
Q psy15121 240 PASTSSSIASLERRPGLICNSSSSV--AEGLLVSRLEGAGNSPPNNGSRPQIASDRSSNGLLSGNDRGHDIGNLAN-TGL 316 (960)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~s~p~~~~~~~~~~~~~~~~~~~~i~~kk~-g~~ 316 (960)
.+...+.|...+...+.-++.+... ..+.+.++|+++.+.+.|++|. +.+.+|.+. |+||| |+|
T Consensus 20 ~~~~~~~i~l~~~~~p~~~~~~~~~~~~~~~~~~~i~~ll~~G~I~~~~---------sp~~sp~~~----V~Kk~~g~~ 86 (255)
T 3fsi_A 20 VRQAPLIIPLKATSTPVSIKQYPMSQEARLGIKPHIQRLLDQGILVPCQ---------SPWNTPLLP----VKKPGTNDY 86 (255)
T ss_dssp TTSCCBCCCBCTTCCCCBCCCCCCCHHHHHHHHHHHHHHHHTTSEEEEC---------CSCBCCBCC----C-------C
T ss_pred CCccceEEEeCCCCCCccCCCccCCHHHHHHHHHHHHHHHhCCeEEecC---------CCeECceeE----eecCCCCce
Confidence 4556788888777777665555443 3444999999999999999763 225567777 99996 999
Q ss_pred EEEEeChhhhhcccCCCCCCCCcchHhhhhc-CCcEEEEeeccccccccccCccccceEEEE------EcCeeEEEEEeC
Q psy15121 317 SIMFNLKSLNSYVTTKKFKLINHQKIPLFLQ-KNDYLATIDLSQAYCHIPIARRHRRFLCFL------YKGTVYQRTCLS 389 (960)
Q Consensus 317 R~~~D~r~lN~~~~~~~~plp~i~~~l~~l~-~~~~~s~lDl~~~y~qi~l~~~d~~~taf~------~~~~~y~~~~lP 389 (960)
|||+|||.||+.|.++.||+|++++++++++ ++++|+++|+++|||||+|+|+|+++|||. ++.|+|+|+|||
T Consensus 87 R~~~D~r~LN~~t~~~~~~lp~~~~ll~~l~~~~~~~s~lDl~~~y~qI~l~~~d~~~taF~~~~~~~t~~g~y~~~~mP 166 (255)
T 3fsi_A 87 RPVQDLREVNKRVEDIHPTVPNPYNLLSGLPPSHQWYTVLDLKDAFFCLRLHPTSQPLFAFEWRDPEMGISGQLTWTRLP 166 (255)
T ss_dssp CCCBCCHHHHTTBCCCCCCSCCHHHHHTTCCTTCCEEEEEEBTTCGGGSBBCTTTGGGGCEECCCSSSCCSSEEEESBCC
T ss_pred eEEeEhhhhccccccCCCCCCcHHHHHHHhhcCCcEEEEccccceeEeeecCccccCceEEEecCCCCCccceEEEEEeC
Confidence 9999999999999999999999999999999 999999999999999999999999999999 568999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHH--cCCeeeEEecceEEEeCCHHHHHHHHHHhhccccccccccCCceecCCccccccC
Q psy15121 390 FGLASAPQAFAQLSNWVAVLLRE--RGVRCLVYLDDFLLASQDSVVLKNQIFQTLPVNLSGNCSRSGRRSHPTHSLVANH 467 (960)
Q Consensus 390 fGl~~aP~~fq~~~~~il~~~~~--~~~~~~~YlDDili~s~s~~e~~~~l~~~~~~~~~~~l~~~g~~~~~~K~~~~~~ 467 (960)
||++|||++||++|+.++..+.. .+..+.+|+|||+|++++.++|.+++.++ +++|++.|+.++++||.+..
T Consensus 167 fGl~~sP~~fq~~m~~il~~~~~~~~~~~v~~Y~DDili~s~~~eeh~~~l~~v-----~~~L~~~gl~l~~~Kc~f~~- 240 (255)
T 3fsi_A 167 QGFKNSPTLFDEALHRDLADFRIQHPDLILLQYVDDLLLAATSELDCQQGTRAL-----LQTLGNLGYRASAKKAQICQ- 240 (255)
T ss_dssp TTCTTHHHHHHHHHHHHTHHHHHHCTTCEEEEETTEEEEEESSHHHHHHHHHHH-----HHHHHHHTCCBCTTTCEEEE-
T ss_pred CCCCCcHHHHHHHHHHHHHHHHHhCcCcEEEEEcCCeEEEeCCHHHHHHHHHHH-----HHHHHHCCeEECHHHhcccC-
Confidence 99999999999999999998864 35578999999999999999999999999 89999999999999998844
Q ss_pred eEEecCChHHHHHHHHhhccccc
Q psy15121 468 TVVLQSDNKTVITYIRKQVGLRS 490 (960)
Q Consensus 468 ~v~~~~~~~~~i~~lg~~v~~~~ 490 (960)
.+ ++|||+.++..+
T Consensus 241 ----~~-----~~fLG~~i~~~g 254 (255)
T 3fsi_A 241 ----KQ-----VKYLGYLLKEGQ 254 (255)
T ss_dssp ----SE-----EEETTEEEETTB
T ss_pred ----Cc-----eEEEEEEEeCCc
Confidence 22 579999887654
No 6
>1rw3_A POL polyprotein; RNA and DNA dependent DNA polymerase, reverse transcriptase, transferase, replication; 3.00A {Moloney murine leukemia virus} SCOP: e.8.1.2
Probab=100.00 E-value=2.8e-40 Score=386.15 Aligned_cols=260 Identities=12% Similarity=0.064 Sum_probs=215.7
Q ss_pred CcchhhhhccCCCcccCCCc--hhhHhHHHHHhhcCCCCCCCCCCCCeeeccCCCCCcccCCCCCCcccccC-CCcEEEE
Q psy15121 243 TSSSIASLERRPGLICNSSS--SVAEGLLVSRLEGAGNSPPNNGSRPQIASDRSSNGLLSGNDRGHDIGNLA-NTGLSIM 319 (960)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~s~p~~~~~~~~~~~~~~~~~~~~i~~kk-~g~~R~~ 319 (960)
..+.|...+...+.-.+.+. ....+.++++|+++.+.|.|+++. +.+.+|.+. |+|| +|+||||
T Consensus 27 ~~~~i~l~~~~~p~~~~~~~~~~~~~~~~~~~i~~ll~~G~I~~~~---------sp~~spv~~----V~Kk~~g~~R~~ 93 (455)
T 1rw3_A 27 APLIIPLKATSTPVSIKQYPMSQEARLGIKPHIQRLLDQGILVPCQ---------SPWNTPLLP----VKKPGTNDYRPV 93 (455)
T ss_dssp CCBCCCBCTTCCCCBCCCCCCCTTHHHHSHHHHHHHHHTTSEEEEC---------CSCBBCEEC----CCCSSSSCCCCE
T ss_pred CceEEEecCCCcccccCCcCCCHHHHHHHHHHHHHHHhCCCEEecC---------CcccCceEE----EeccCCCcEEEc
Confidence 34555555554444333332 233445889999999999998763 124556666 8898 7999999
Q ss_pred EeChhhhhcccCCCCCCCCcchHhhhhc-CCcEEEEeeccccccccccCccccceEEEEE------cCeeEEEEEeCCCC
Q psy15121 320 FNLKSLNSYVTTKKFKLINHQKIPLFLQ-KNDYLATIDLSQAYCHIPIARRHRRFLCFLY------KGTVYQRTCLSFGL 392 (960)
Q Consensus 320 ~D~r~lN~~~~~~~~plp~i~~~l~~l~-~~~~~s~lDl~~~y~qi~l~~~d~~~taf~~------~~~~y~~~~lPfGl 392 (960)
+|||.||+.|.++.||+|++++++++++ ++++|+++|+++|||||+|+|+|+++|||+| +.|+|+|+|||||+
T Consensus 94 ~D~r~LN~~~~~~~~~lp~~~~ll~~l~~~~~~~s~lDl~~~y~qi~l~~~d~~~taF~~~~p~~~~~g~y~~~~mpfGl 173 (455)
T 1rw3_A 94 QDLREVNKRVEDIHPTVPNPYNLLSGLPPSHQWYTVLDLKDAFFCLRLHPTSQPLFAFEWRDPEMGISGQLTWTRLPQGF 173 (455)
T ss_dssp ECTHHHHHTBCCCCCCCCCHHHHHTTCCTTCCEEEEEEBTTGGGGSBBCSTTSGGGCEEECTTSSSCCEEEEESBCCSSC
T ss_pred hhHHHHHhhccCCCCCCCCHHHHhhhhccCCceEEecchhhhheeEeccccccceeEEeecCCCCCCCceEEEEecCCCC
Confidence 9999999999999999999999999997 9999999999999999999999999999998 48999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHHH--cCCeeeEEecceEEEeCCHHHHHHHHHHhhccccccccccCCceecCCccccccCeEE
Q psy15121 393 ASAPQAFAQLSNWVAVLLRE--RGVRCLVYLDDFLLASQDSVVLKNQIFQTLPVNLSGNCSRSGRRSHPTHSLVANHTVV 470 (960)
Q Consensus 393 ~~aP~~fq~~~~~il~~~~~--~~~~~~~YlDDili~s~s~~e~~~~l~~~~~~~~~~~l~~~g~~~~~~K~~~~~~~v~ 470 (960)
+|||++||++|+.++..+.. .+..+.+|+|||+|+|++.++|.+++.++ +++|++.|+.++++||.+..
T Consensus 174 ~naP~~fq~~m~~~l~~~~~~~~~~~v~~YvDDili~s~~~~e~~~~l~~v-----~~~l~~~gl~l~~~K~~f~~---- 244 (455)
T 1rw3_A 174 KNSPTLFDEALHRDLADFRIQHPDLILLQYVDDLLLAATSELDCQQGTRAL-----LQTLGNLGYRASAKKAQICQ---- 244 (455)
T ss_dssp TTHHHHHHHHHHHHHHHHHHTCTTCEEEEETTEEEEEESSHHHHHHHHHHH-----HHHHHHHTCCBCGGGCCCSB----
T ss_pred CCcHHHHHHHHHHHHHHhhhhCCCceEEEEcCCEEEecCCHHHHHHHHHHH-----HHHHHHcCCccCccchhhhc----
Confidence 99999999999999988853 25678999999999999999999999999 88999999999999998843
Q ss_pred ecCChHHHHHHHHhhccccchhhH-HHHHHHHHHHhhcCccccccccCCcccccccccccCC
Q psy15121 471 LQSDNKTVITYIRKQVGLRSNALL-AETKKLLLIMSKLNIHIVPYFIPGKCNSLADALSRQA 531 (960)
Q Consensus 471 ~~~~~~~~i~~lg~~v~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~Gl~N~~ad~lsr~~ 531 (960)
.+ ++|||+.++..++... .++..+.++..+.+ ..+.++++|++|+++.++++-.
T Consensus 245 -~~-----~~fLG~~i~~~gi~~~~~kv~~i~~~~~p~t-~k~l~~flG~~~y~r~fi~~~~ 299 (455)
T 1rw3_A 245 -KQ-----VKYLGYLLKEGQRWLTEARKETVMGQPTPKT-PRQLREFLGTAGFCRLWIPGFA 299 (455)
T ss_dssp -SS-----CEETTEEESSSEECCCTTCCCCCCCCCTTTH-HHHHHHTTTTTCCCSSCCCCCG
T ss_pred -cc-----eeEeeeeccCCeeEEChhHhhhhccCCCCCC-HHHhhhhcccchHHHHHHhhhh
Confidence 23 5799999999887766 33344444444443 3488899999999999988754
No 7
>2zd1_A Reverse transcriptase/ribonuclease H; P51/P66, hetero dimer, NNRTI, nonnucleoside inhibitor, AIDS, HIV, rilpivirine, diarylpyrimidine, DAPY, DNA recombination; HET: T27; 1.80A {Human immunodeficiency virus 1} PDB: 3is9_A* 3irx_A* 2ze2_A* 3bgr_A* 3qlh_A* 3klf_A* 3qo9_A* 1dlo_A 1bqm_A 2be2_A* 1s6q_A* 1s6p_A* 1s9g_A* 1suq_A* 2b5j_A* 2b6a_A* 2ban_A* 1s9e_A* 1hni_A* 1hnv_A* ...
Probab=100.00 E-value=3.5e-38 Score=376.90 Aligned_cols=260 Identities=13% Similarity=0.119 Sum_probs=210.3
Q ss_pred CCCCCCCcchhhhhccCCCcccCCCchh--hHhHHHHHhhcCCCCCCCCCCCCeeeccCCCCCcccCCCCCCcccccCCC
Q psy15121 237 LPAPASTSSSIASLERRPGLICNSSSSV--AEGLLVSRLEGAGNSPPNNGSRPQIASDRSSNGLLSGNDRGHDIGNLANT 314 (960)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~s~p~~~~~~~~~~~~~~~~~~~~i~~kk~g 314 (960)
+|...-..+.|...+...+.-.+.++.. ..+.++++|+++...|.|++.. |.+.+.+|.+. |+||||
T Consensus 2 ~p~~~~~~~~i~l~~~~~p~~~~~~~~~~~~~~~~~~~i~~ll~~G~I~~v~-------s~s~~~spv~~----V~Kk~g 70 (557)
T 2zd1_A 2 VPISPIETVPVKLKPGMDGPKVKQWPLTEEKIKALVEICTEMEKEGKISKIG-------PENPYNTPVFA----IKKKDS 70 (557)
T ss_dssp CCCCCCCCCCCCBCTTCCCCBCCCCCCCHHHHHHHHHHHHHHHHTTSEEECC-------SCCCCBBCEEE----EECSSC
T ss_pred CCCCCCcceeeeCCCCCCCCccCCcCCCHHHHHHHHHHHHHHHHCCCEEECC-------CCCCCcCCeEE----EECCCC
Confidence 4555556677777777555544444433 3344899999999999998520 11234456666 999999
Q ss_pred -cEEEEEeChhhhhcccC---CCCCCCCcchHhhhhcCCcEEEEeeccccccccccCccccceEEEEE-------cCeeE
Q psy15121 315 -GLSIMFNLKSLNSYVTT---KKFKLINHQKIPLFLQKNDYLATIDLSQAYCHIPIARRHRRFLCFLY-------KGTVY 383 (960)
Q Consensus 315 -~~R~~~D~r~lN~~~~~---~~~plp~i~~~l~~l~~~~~~s~lDl~~~y~qi~l~~~d~~~taf~~-------~~~~y 383 (960)
+||||+|||.||++|.+ +.||+|.+++ |+++++|+++|+++|||||||+|+|+++|||+| +.|+|
T Consensus 71 ~k~R~~vD~r~LN~~t~~~~~~~~plP~i~~----l~~~~~~s~lDl~~~y~qi~l~~~d~~~taF~~p~~~~~t~~g~y 146 (557)
T 2zd1_A 71 TKWRKLVDFRELNKRTQDFWEVQLGIPHPAG----LKKKKSVTVLDVGDAYFSVPLDEDFRKYTAFTIPSINNETPGIRY 146 (557)
T ss_dssp SCEEEEECCHHHHHHBCCCCCTTSSCCCGGG----SCCCSEEEEEECTTGGGGSBCCTTTGGGGCEEECCGGGCSCCEEE
T ss_pred CceEEEEEhHHHhhhccccccccCCCCCchh----hcCCCeeEEehhhhhhheeEcCccccceeEEEeecCCCCCCceEE
Confidence 99999999999999999 9999999976 589999999999999999999999999999996 78999
Q ss_pred EEEEeCCCCCCHHHHHHHHHHHHHHHHHHc--CCeeeEEecceEEEeC-CHHHHHHHHHHhhccccccccccCCceecCC
Q psy15121 384 QRTCLSFGLASAPQAFAQLSNWVAVLLRER--GVRCLVYLDDFLLASQ-DSVVLKNQIFQTLPVNLSGNCSRSGRRSHPT 460 (960)
Q Consensus 384 ~~~~lPfGl~~aP~~fq~~~~~il~~~~~~--~~~~~~YlDDili~s~-s~~e~~~~l~~~~~~~~~~~l~~~g~~~~~~ 460 (960)
+|+||||||+|||++||++|+.++..+... +..+.+|+|||+|+|+ +.+||..++.++ +++|++.|+.++++
T Consensus 147 ~~~~mPfGl~nap~~fq~~m~~il~~~~~~~~~~~v~~Y~DDIli~s~~~~~eh~~~l~~v-----~~~l~~~gl~l~~~ 221 (557)
T 2zd1_A 147 QYNVLPQGWKGSPAIFQSSMTKILEPFAAQNPDIVIYQYMDDLYVGSDLEIGQHRTKIEEL-----RQHLLRWGLTTPDK 221 (557)
T ss_dssp EESBCCTTCTTHHHHHHHHHHHHHHHHHHTCTTEEEEEETTEEEEEECSCHHHHHHHHHHH-----HHHHHTTTCCCCCS
T ss_pred EEEeeCCCCCCHHHHHHHHHHHHHHHhhhcCCCceEEEEecCEEEecCchHHHHHHHHHHH-----HHHHHHcCCccChh
Confidence 999999999999999999999999998643 3358899999999999 699999999999 89999999999999
Q ss_pred ccccccCeEEecCChHHHHHHHHhhccccchhhHHHHHHHHHHHhhcCccccccccCCcccccccccccCC
Q psy15121 461 HSLVANHTVVLQSDNKTVITYIRKQVGLRSNALLAETKKLLLIMSKLNIHIVPYFIPGKCNSLADALSRQA 531 (960)
Q Consensus 461 K~~~~~~~v~~~~~~~~~i~~lg~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Gl~N~~ad~lsr~~ 531 (960)
||.+.. + +.|||+.++.++++..... +.....+ ...++++|+|+.|+++.++++-.
T Consensus 222 Kc~f~~------~-----~~fLG~~i~~~gi~~~~~k---~~~~~~~-t~k~lr~flG~~~~yrrfi~~~~ 277 (557)
T 2zd1_A 222 KHQKEP------P-----FLWMGYELHPDKWTVQPIV---LPEKDSW-TVNDIQKLVGKLNWASQIYPGIK 277 (557)
T ss_dssp CCSCCS------S-----EEETTEEECSSCEEESCCC---CCCCSCE-EHHHHHHHHHHHHHHTTTSTTCC
T ss_pred hcCCCC------c-----eEEeeEEEccCcEEEccee---cccccCC-CHHHHHHHhhHHHhhhhhccchh
Confidence 998722 2 5699999999987654211 0001112 33478899999999999998754
No 8
>2zd1_B P51 RT; P51/P66, hetero dimer, NNRTI, nonnucleoside inhibitor, AIDS, HIV, rilpivirine, diarylpyrimidine, DAPY, DNA recombination; HET: T27; 1.80A {Human immunodeficiency virus 1} SCOP: e.8.1.2 PDB: 2ykm_B* 2ykn_B* 2ze2_B* 3bgr_B* 3ig1_B* 3irx_B* 3is9_B* 3qo9_B* 3v4i_B* 3v6d_B* 3v81_B* 3klf_B* 3kk1_B* 3kjv_B* 3kk2_B* 3kk3_B* 2be2_B* 1n5y_B* 1bqm_B* 1n6q_B* ...
Probab=100.00 E-value=1.6e-38 Score=366.72 Aligned_cols=254 Identities=13% Similarity=0.108 Sum_probs=194.1
Q ss_pred CcchhhhhccCCCcccCCCch--hhHhHHHHHhhcCCCCCCCCCCCCeeeccCCCCCcccCCCCCCcccccCCC-cEEEE
Q psy15121 243 TSSSIASLERRPGLICNSSSS--VAEGLLVSRLEGAGNSPPNNGSRPQIASDRSSNGLLSGNDRGHDIGNLANT-GLSIM 319 (960)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~s~p~~~~~~~~~~~~~~~~~~~~i~~kk~g-~~R~~ 319 (960)
..|.|...+...+.-.+.++. ...+.++++|+++...|.|++.. |.+.+.+|.+. |+|||| +||||
T Consensus 6 ~~~~i~l~~~~~p~~~~~~~~~~~~~~~~~~~i~~ll~~G~I~~v~-------s~s~~~sPv~~----V~Kk~g~k~R~~ 74 (428)
T 2zd1_B 6 ETVPVKLKPGMDGPKVKQWPLTEEKIKALVEICTEMEKEGKISKIG-------PENPYNTPVFA----IKKKDSTKWRKL 74 (428)
T ss_dssp CCCCCCBCTTCCCCBCCCCCCCHHHHHHHHHHHHHHHHTTSEEECC-------TTCCCBBCEEE----ECCTTCSSCEEE
T ss_pred CceEEeccCCCCCCcCCCcCCCHHHHHHHHHHHHHHHHCCCceECC-------CCCCccCceee----ccCCCCCceEEE
Confidence 345666666554444444433 33344899999999999998520 11233445555 999998 79999
Q ss_pred EeChhhhhcccC---CCCCCCCcchHhhhhcCCcEEEEeeccccccccccCccccceEEEEE-------cCeeEEEEEeC
Q psy15121 320 FNLKSLNSYVTT---KKFKLINHQKIPLFLQKNDYLATIDLSQAYCHIPIARRHRRFLCFLY-------KGTVYQRTCLS 389 (960)
Q Consensus 320 ~D~r~lN~~~~~---~~~plp~i~~~l~~l~~~~~~s~lDl~~~y~qi~l~~~d~~~taf~~-------~~~~y~~~~lP 389 (960)
+|||.||+.|.+ +.||+|.+++ |+++++|+++|+++|||||+|+|+|+++|||.| ++|+|+|+|||
T Consensus 75 vD~r~LN~~t~~~~~~~~plP~i~~----l~~~~~~s~lDl~~gy~qI~l~~~d~~~taF~~p~~~~~t~~g~y~~~vmP 150 (428)
T 2zd1_B 75 VDFRELNKRTQDFWEVQLGIPHPAG----LKKKKSVTVLDVGDAYFSVPLDEDFRKYTAFTIPSINNETPGIRYQYNVLP 150 (428)
T ss_dssp ECTHHHHHHBCCCCCTTSCCCCCTT----GGGSSEEEEEECGGGGGGSBCCTTTGGGGCEEECCGGGCSCCEEEEESBCC
T ss_pred EechHhcCcccccccccCCCCCchh----ccccceEEEeeccCceeeEEcCccccceeEEEeecCCCCCCCceEEEEeeC
Confidence 999999999999 8999999976 689999999999999999999999999999996 57999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHc--CCeeeEEecceEEEeCC-HHHHHHHHHHhhccccccccccCCceecCCcccccc
Q psy15121 390 FGLASAPQAFAQLSNWVAVLLRER--GVRCLVYLDDFLLASQD-SVVLKNQIFQTLPVNLSGNCSRSGRRSHPTHSLVAN 466 (960)
Q Consensus 390 fGl~~aP~~fq~~~~~il~~~~~~--~~~~~~YlDDili~s~s-~~e~~~~l~~~~~~~~~~~l~~~g~~~~~~K~~~~~ 466 (960)
|||+|||++||++|+.++..+... +..+.+|+|||+|+|++ .+||..++.++ +++|++.|+.++++||.+.
T Consensus 151 fGl~nsPa~fq~~m~~il~~~~~~~~~~~v~vY~DDIlI~s~~~~~eh~~~l~~v-----~~~l~~~gL~l~~~Kc~~~- 224 (428)
T 2zd1_B 151 QGWKGSPAIFQSSMTKILEPFKKQNPDIVIYQYMDDLYVGSDLEIGQHRTKIEEL-----RQHLLRWGLTTPDKKHQKE- 224 (428)
T ss_dssp TTCTHHHHHHHHHHHHHHHHHHHHCTTCEEEEETTEEEEEECSCHHHHHHHHHHH-----HHHHHHHHC-----------
T ss_pred CCCcchHHHHHHHHHHHHHHHhhcCCCceEEEEecceEEecCCcHHHHHHHHHHH-----HHHHHHhCCccChhHcccc-
Confidence 999999999999999999988643 34588999999999995 79999999999 8899999999999999861
Q ss_pred CeEEecCChHHHHHHHHhhccccchhhHHHHHHHHHHHhhcCccccccccCCcccccccccccCC
Q psy15121 467 HTVVLQSDNKTVITYIRKQVGLRSNALLAETKKLLLIMSKLNIHIVPYFIPGKCNSLADALSRQA 531 (960)
Q Consensus 467 ~~v~~~~~~~~~i~~lg~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Gl~N~~ad~lsr~~ 531 (960)
.+ ++|||+.++.++++..... +....+++ ..+.++++|++|+++.++++-.
T Consensus 225 -----~~-----~~fLG~~i~~~~i~~~~~k---i~~~~~~t-~k~lr~flG~~~yyrrFi~~~s 275 (428)
T 2zd1_B 225 -----PP-----FLWMGYELHPDKWTVQPIV---LPEKDSWT-VNDIQKLVGKLNWASQIYPGIK 275 (428)
T ss_dssp ------------CTTCCEEECGGGCCCCCCC---CCCCSSEE-HHHHHHHHHHHHHHTTTCTTCC
T ss_pred -----ce-----EEEeccEecCCceEecccc---cccccccC-HHHHHHHhhhHHHHHHhcCCcc
Confidence 12 6799999998887654210 00011222 3378899999999999988754
No 9
>1mu2_A HIV-2 RT; HIV-2 reverse transcriptase, AIDS, polymerase, drug design, transferase; 2.35A {Human immunodeficiency virus 2} SCOP: c.55.3.1 e.8.1.2 PDB: 1mu2_B
Probab=100.00 E-value=4.6e-38 Score=375.70 Aligned_cols=252 Identities=15% Similarity=0.123 Sum_probs=200.6
Q ss_pred CcchhhhhccCCCcccCCCchhh--HhHHHHHhhcCCCCCCCCCCCCeeeccCCCCCcccCCCCCCcccccCCC-cEEEE
Q psy15121 243 TSSSIASLERRPGLICNSSSSVA--EGLLVSRLEGAGNSPPNNGSRPQIASDRSSNGLLSGNDRGHDIGNLANT-GLSIM 319 (960)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~s~p~~~~~~~~~~~~~~~~~~~~i~~kk~g-~~R~~ 319 (960)
..+.|...+...+.-.+.++... .+.++++|+++...|.|+++. |.+.+.+|.+. |+|||| +||||
T Consensus 6 ~~~~i~l~~~~~p~~~~~~~~~~~~~~~~~~~i~~ll~~G~I~~~~-------~~s~~~spv~~----V~Kk~g~k~R~~ 74 (555)
T 1mu2_A 6 EPIKIMLKPGKDGPKLRQWPLTKEKIEALKEICEKMEKEGQLEEAP-------PTNPYNTPTFA----IKKKDKNKWRML 74 (555)
T ss_dssp CCCCCCBCTTCCCCBCCCCCCCHHHHHHHHHHHHHHHHHTSEEECC-------TTCCCBBCEEE----CCCCC----CEE
T ss_pred CceEEEecCCCCCCCcCCcCCCHHHHHHHHHHHHHHHHCCCeEECC-------CCCCCCCceEE----ecCCCCCceEEE
Confidence 34555655554444333333333 334899999999999998752 11234456666 999998 69999
Q ss_pred EeChhhhhcccCC---CCCCCCcchHhhhhcCCcEEEEeeccccccccccCccccceEEEEEc-------CeeEEEEEeC
Q psy15121 320 FNLKSLNSYVTTK---KFKLINHQKIPLFLQKNDYLATIDLSQAYCHIPIARRHRRFLCFLYK-------GTVYQRTCLS 389 (960)
Q Consensus 320 ~D~r~lN~~~~~~---~~plp~i~~~l~~l~~~~~~s~lDl~~~y~qi~l~~~d~~~taf~~~-------~~~y~~~~lP 389 (960)
+|||.||+.|.++ .||+|.+++ |+++++|+++|+++|||||+|+|+|+++|||+|+ +|+|+|+|||
T Consensus 75 vD~r~LN~~t~~~~~~~~~lP~~~~----l~~~~~~s~lDl~~~y~qI~l~~~d~~~taF~~p~~~~~~~~g~y~~~~mP 150 (555)
T 1mu2_A 75 IDFRELNKVTQDFTEIQLGIPHPAG----LAKKRRITVLDVGDAYFSIPLHEDFRPYTAFTLPSVNNAEPGKRYIYKVLP 150 (555)
T ss_dssp ECTHHHHHHBCCCCCCCCSCCCGGG----SBCCSEEEEEECBSSGGGSBCCTTTGGGGCEEC---------CEEEESBCC
T ss_pred EehHHhhhhCcccccccCCCCchhh----cCCCceEEEehhHhcceEEEeccCceeeeEEEeecCCCCCCceEEEEEEeC
Confidence 9999999999998 999999875 6999999999999999999999999999999995 7999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHc--CCeeeEEecceEEEeC-CHHHHHHHHHHhhccccccccccCCceecCCcccccc
Q psy15121 390 FGLASAPQAFAQLSNWVAVLLRER--GVRCLVYLDDFLLASQ-DSVVLKNQIFQTLPVNLSGNCSRSGRRSHPTHSLVAN 466 (960)
Q Consensus 390 fGl~~aP~~fq~~~~~il~~~~~~--~~~~~~YlDDili~s~-s~~e~~~~l~~~~~~~~~~~l~~~g~~~~~~K~~~~~ 466 (960)
|||+|||++||++|+.++..+... +..+.+|||||+|+|+ +.+||..++.++ +++|++.|+.++++||..
T Consensus 151 fGl~napa~fq~~m~~il~~~~~~~~~~~v~~Y~DDIli~s~~~~~eh~~~l~~v-----~~~l~~~gl~l~~~K~~~-- 223 (555)
T 1mu2_A 151 QGWKGSPAIFQHTMRQVLEPFRKANKDVIIIQYMDDILIASDRTDLEHDRVVLQL-----KELLNGLGFSTPDEKFQK-- 223 (555)
T ss_dssp TTCTTHHHHHHHHHHHHHHHHHHHCTTSEEEEETTEEEEEECSCHHHHHHHHHHH-----HHHHHHTTCBCCSTTEEC--
T ss_pred CCCCCcHHHHHHHHHHHHHHHHhhCCCcEEEEEecceEEecCCCHHHHHHHHHHH-----HHHHHHcCCccCHHHhcc--
Confidence 999999999999999999998643 4568999999999999 799999999999 899999999999999843
Q ss_pred CeEEecCChHHHHHHHHhhccccchhhHHH-HHHHHHHHhhcCccccccccCCcccccccccccC
Q psy15121 467 HTVVLQSDNKTVITYIRKQVGLRSNALLAE-TKKLLLIMSKLNIHIVPYFIPGKCNSLADALSRQ 530 (960)
Q Consensus 467 ~~v~~~~~~~~~i~~lg~~v~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~Gl~N~~ad~lsr~ 530 (960)
.++ ++|||+.++.++++.... +.. ..+++. .+++.|+|++|+++.++++-
T Consensus 224 ----~~~-----~~fLG~~i~~~gi~~~~~ki~~----i~~~t~-k~lr~flG~~~~~rrfi~~~ 274 (555)
T 1mu2_A 224 ----DPP-----YHWMGYELWPTKWKLQKIQLPQ----KEIWTV-NDIQKLVGVLNWAAQLYPGI 274 (555)
T ss_dssp ----SSS-----EEETTEEECSSEEEECCCCCCC----CSSCBH-HHHHHHHHHHHHHHHHSTTC
T ss_pred ----CCc-----eeEEeEEEeCCceeccccccCc----CCCCCH-HHHHhHhhhhhhhhhccCcc
Confidence 223 689999999998775521 111 123333 48899999999999998874
No 10
>3fsi_A RT, reverse transcriptase domain; transferase/DNA MMLV RT, protein-DNA complex, drug-DNA complex; HET: OWL; 1.75A {Moloney murine leukemia virus} SCOP: e.8.1.2 PDB: 1d1u_A 1n4l_A* 1ztt_A 2fjv_A* 2fjw_A 2fjx_A* 2fvp_A 2fvq_A 2fvr_A 2fvs_A 2r2r_A* 2r2s_A* 2r2t_A* 2r2u_A* 1ztw_A* 1i6j_A 1qaj_A* 1d0e_A* 1nnd_A 1mml_A ...
Probab=100.00 E-value=1.6e-35 Score=319.46 Aligned_cols=159 Identities=23% Similarity=0.298 Sum_probs=145.5
Q ss_pred ccCC-CCeeEEeecccccccccCCCCcCCChhhHhhhcC-CCcEEEeeehhhccCcccccccccccceee----------
Q psy15121 604 LYGD-GTMRPVFNLKSLNSYVTTKKFKLINHQKIPLFLQ-KNDYLATIDLSQAYCHIPIARRHRRFLCFL---------- 671 (960)
Q Consensus 604 ~kk~-gk~R~~vD~r~LN~~~~~~~~plp~i~~~l~~l~-~~~~fs~lDl~~ay~qI~l~~~d~~~taF~---------- 671 (960)
.||+ |+||+|+|||.||+.|.++.+|+|++++++++++ |+++|+++|+++|||||+|+++|+++|||.
T Consensus 79 ~Kk~~g~~R~~~D~r~LN~~t~~~~~~lp~~~~ll~~l~~~~~~~s~lDl~~~y~qI~l~~~d~~~taF~~~~~~~t~~g 158 (255)
T 3fsi_A 79 KKPGTNDYRPVQDLREVNKRVEDIHPTVPNPYNLLSGLPPSHQWYTVLDLKDAFFCLRLHPTSQPLFAFEWRDPEMGISG 158 (255)
T ss_dssp -------CCCCBCCHHHHTTBCCCCCCSCCHHHHHTTCCTTCCEEEEEEBTTCGGGSBBCTTTGGGGCEECCCSSSCCSS
T ss_pred ecCCCCceeEEeEhhhhccccccCCCCCCcHHHHHHHhhcCCcEEEEccccceeEeeecCccccCceEEEecCCCCCccc
Confidence 4665 9999999999999999999999999999999999 999999999999999999999999999995
Q ss_pred -eeecccccCCCCccccchhhHHHhhHhhhc-----CCeEEEEecceEEecCCHHHHHHHHHHHHHHHHHcCCeecccCc
Q psy15121 672 -IPMDMSSFRPSLSSPGVCPTIKLGRRLRER-----GVRCLVYLDDFLLASQDPIVLKNQILQTLQLLTYLGWQVNLKKS 745 (960)
Q Consensus 672 -y~~~rlPFG~l~~ap~~f~~~~i~~~l~~~-----~~~v~~YvDDili~s~s~eeh~~~l~~vl~~l~~~Gl~l~~~K~ 745 (960)
|+|+||||| +++||++|| +.|..++.++ +..+.+|+|||+|++++.++|..+++.|+++|+++|+.+|++||
T Consensus 159 ~y~~~~mPfG-l~~sP~~fq-~~m~~il~~~~~~~~~~~v~~Y~DDili~s~~~eeh~~~l~~v~~~L~~~gl~l~~~Kc 236 (255)
T 3fsi_A 159 QLTWTRLPQG-FKNSPTLFD-EALHRDLADFRIQHPDLILLQYVDDLLLAATSELDCQQGTRALLQTLGNLGYRASAKKA 236 (255)
T ss_dssp EEEESBCCTT-CTTHHHHHH-HHHHHHTHHHHHHCTTCEEEEETTEEEEEESSHHHHHHHHHHHHHHHHHHTCCBCTTTC
T ss_pred eEEEEEeCCC-CCCcHHHHH-HHHHHHHHHHHHhCcCcEEEEEcCCeEEEeCCHHHHHHHHHHHHHHHHHCCeEECHHHh
Confidence 999999999 999999998 6777777664 45899999999999999999999999999999999999999999
Q ss_pred cccccceEEEEEEEEcCCCc
Q psy15121 746 QIIPSHRVDYLGISWDTDLL 765 (960)
Q Consensus 746 ~~~~~~~~~fLG~~i~~~g~ 765 (960)
+|+.+ +++||||+|+.+|+
T Consensus 237 ~f~~~-~~~fLG~~i~~~gv 255 (255)
T 3fsi_A 237 QICQK-QVKYLGYLLKEGQR 255 (255)
T ss_dssp EEEES-EEEETTEEEETTBC
T ss_pred cccCC-ceEEEEEEEeCCcC
Confidence 99885 99999999998873
No 11
>3hst_B Protein RV2228C/MT2287; ribonuclease H1, RV2228C N-terminal domain, fusion protein, maltose binding protein, HYDR; HET: MLR TAR; 2.25A {Mycobacterium tuberculosis}
Probab=98.71 E-value=1.7e-08 Score=97.60 Aligned_cols=118 Identities=19% Similarity=0.222 Sum_probs=86.6
Q ss_pred ceEEEeCCCc------cceeeeEeeee---eccccccccccCChhHHHHHHHHHHHHhCccccCCCeEEEEcCCHHHHHH
Q psy15121 808 RTFMSTDASD------VGWGAMVGNVS---VQGVWTQAQRSWHINLKELFTVRAAISSNPSLVANHTVVLQSDNKTVIAY 878 (960)
Q Consensus 808 ~~~l~tDAS~------~g~GavL~q~~---~S~~l~~~e~~ysi~~kEllAiv~Al~~~~~~L~g~~~~I~TDh~~l~~~ 878 (960)
++.||||||- .|+|+++...- .-..++......+.++.|+.|++.||+.... +...+++|+||++.++..
T Consensus 3 ~~~iy~DGs~~~~~g~~g~G~v~~~~~~~~~~~~~~~~~~~~tn~~aEl~A~~~aL~~a~~-~~~~~v~i~tDS~~vv~~ 81 (141)
T 3hst_B 3 KVVIEADGGSRGNPGPAGYGAVVWTADHSTVLAESKQAIGRATNNVAEYRGLIAGLDDAVK-LGATEAAVLMDSKLVVEQ 81 (141)
T ss_dssp EEEEEEEEEESSSSEEEEEEEEEEETTSCSEEEEEEEEEEEECHHHHHHHHHHHHHHHHHH-HTCSEEEEEESCHHHHHH
T ss_pred EEEEEEecCCCCCCCCcEEEEEEEeCCCCcEEEeeeccCCCCchHHHHHHHHHHHHHHHHH-CCCceEEEEeChHHHHHH
Confidence 5789999974 48888886421 1112233334568899999999999987543 334789999999999999
Q ss_pred HHhcCCCCChhHHHHHHHHHHHHhccCcEEEEEeeCCCCCCccccccCC
Q psy15121 879 IRKQGGLRSHALLAETKKLLLIMSKLNIHIVPYFIPGKCNSLADALSRQ 927 (960)
Q Consensus 879 l~~~~~~~~~~l~~~~~r~~~~l~~~~~~i~~~~vpG~~N~~AD~LSR~ 927 (960)
+++....++..+...+.++..++.+| ..+.+.|||++.|..||.|++.
T Consensus 82 i~~~~~~~~~~l~~~~~~i~~l~~~~-~~v~~~~V~~~~N~~AD~LA~~ 129 (141)
T 3hst_B 82 MSGRWKVKHPDLLKLYVQAQALASQF-RRINYEWVPRARNTYADRLAND 129 (141)
T ss_dssp HTTSSCCCSHHHHHHHHHHHHHHTTS-SEEEEEECCGGGCHHHHHHHHH
T ss_pred HhCCcccCCHHHHHHHHHHHHHHhcC-CeEEEEEcCCcccHHHHHHHHH
Confidence 98754456666666666666667665 3556679999999999999983
No 12
>2ehg_A Ribonuclease HI; RNAse HI, hyperthermophilic archaeon, D stranded RNA-dependent RNAse, hydrolase; 1.60A {Sulfolobus tokodaii} PDB: 3aly_A
Probab=98.71 E-value=1.1e-08 Score=100.02 Aligned_cols=116 Identities=16% Similarity=0.111 Sum_probs=85.3
Q ss_pred eEEEeCCCcc-------ce-eeeEeee-----eeccccccccccCChhHHHHHHHHHHHHhCccccCCCeEEEEcCCHHH
Q psy15121 809 TFMSTDASDV-------GW-GAMVGNV-----SVQGVWTQAQRSWHINLKELFTVRAAISSNPSLVANHTVVLQSDNKTV 875 (960)
Q Consensus 809 ~~l~tDAS~~-------g~-GavL~q~-----~~S~~l~~~e~~ysi~~kEllAiv~Al~~~~~~L~g~~~~I~TDh~~l 875 (960)
+.+|||+|-. |+ |+++... ..+....+.+...+.++.|+.|++.||+.... +...+++|+|||+.+
T Consensus 2 ~~iy~DGs~~~~n~g~~G~~G~vi~~~g~~~~~~~~~~~~~~~~~tnn~aEl~A~~~aL~~a~~-~g~~~v~i~tDS~~v 80 (149)
T 2ehg_A 2 IIGYFDGLCEPKNPGGIATFGFVIYLDNRKIEGYGLAEKPFSINSTNNVAEYSGLICLMETMLR-LGISSPIIKGDSQLV 80 (149)
T ss_dssp CEEEEEEEEESSSSSSEEEEEEEEECSSCEEEEEEECSCTTCTTCCHHHHHHHHHHHHHHHHHH-HTCCSCEEEESCHHH
T ss_pred EEEEEeeccCCCCCChheEEEEEEEECCEEEEEeccccCCCCCCccHHHHHHHHHHHHHHHHHH-cCCCEEEEEeChHHH
Confidence 4789999754 54 8888642 11111111223567899999999999987653 234689999999999
Q ss_pred HHHHHhcCCCCChhHHHHHHHHHHHHhccCcEEEEEeeCCCCCCccccccCC
Q psy15121 876 IAYIRKQGGLRSHALLAETKKLLLIMSKLNIHIVPYFIPGKCNSLADALSRQ 927 (960)
Q Consensus 876 ~~~l~~~~~~~~~~l~~~~~r~~~~l~~~~~~i~~~~vpG~~N~~AD~LSR~ 927 (960)
+..+++.-..++..+...+.++..++.+|++.+ .||||+.|..||.|+|.
T Consensus 81 i~~i~~~w~~~~~~~~~l~~~i~~l~~~~~v~~--~~V~~~~N~~AD~LA~~ 130 (149)
T 2ehg_A 81 IKQMNGEYKVKAKRIIPLYEKAIELKKKLNATL--IWVPREENKEADRLSRV 130 (149)
T ss_dssp HHHHTTSSCCCCTTHHHHHHHHHHHHHHHTCEE--EECCGGGCHHHHHHHHH
T ss_pred HHHHhCccccCCHHHHHHHHHHHHHHhcCCEEE--EEcCCcccHHHHHHHHH
Confidence 999987533344566677788888888887665 59999999999999983
No 13
>3u3g_D Ribonuclease H, RNAse H1; hydrolase, cleave the RNA strand of RNA/DNA hybrid; 1.40A {Uncultured organism}
Probab=98.66 E-value=2.1e-08 Score=96.75 Aligned_cols=118 Identities=17% Similarity=0.201 Sum_probs=85.9
Q ss_pred CceEEEeCCCc------cceeeeEeee--eeccccccccccCChhHHHHHHHHHHHHhCccc-c--CCCeEEEEcCCHHH
Q psy15121 807 PRTFMSTDASD------VGWGAMVGNV--SVQGVWTQAQRSWHINLKELFTVRAAISSNPSL-V--ANHTVVLQSDNKTV 875 (960)
Q Consensus 807 ~~~~l~tDAS~------~g~GavL~q~--~~S~~l~~~e~~ysi~~kEllAiv~Al~~~~~~-L--~g~~~~I~TDh~~l 875 (960)
..+.+|||||- .|+|+++... ..-..++......+.++.|+.|++.||+..... . .+.+++|+||++.+
T Consensus 2 ~~~~iy~DGs~~~n~g~~G~G~v~~~~~g~~~~~~~~~~~~~tn~~aEl~A~~~aL~~a~~~~~~~~~~~v~i~tDS~~v 81 (140)
T 3u3g_D 2 NKIIIYTDGGARGNPGPAGIGVVITDEKGNTLHESSAYIGETTNNVAEYEALIRALEDLQMFGDKLVDMEVEVRMDSELI 81 (140)
T ss_dssp CEEEEEEEEEESSTTEEEEEEEEEECTTSCEEEEEEEEEEEECHHHHHHHHHHHHHHHHGGGGGGGTTCEEEEEESCHHH
T ss_pred ceEEEEEecCCCCCCCCcEEEEEEEeCCCCEEEEEEeeCCCCchHHHHHHHHHHHHHHHHHcCCCCCCceEEEEeChHHH
Confidence 35789999975 5889888652 000112222223578999999999999975432 1 13389999999999
Q ss_pred HHHHHhcCCCCChhHHHHHHHHHHH-Hhcc-CcEEEEEeeCCCCCCccccccC
Q psy15121 876 IAYIRKQGGLRSHALLAETKKLLLI-MSKL-NIHIVPYFIPGKCNSLADALSR 926 (960)
Q Consensus 876 ~~~l~~~~~~~~~~l~~~~~r~~~~-l~~~-~~~i~~~~vpG~~N~~AD~LSR 926 (960)
+..+++....++..+...+.++..+ +.+| .+.+ .|||+..|..||.|++
T Consensus 82 i~~i~~~~~~~~~~l~~~~~~i~~l~~~~~~~v~~--~~V~~~~N~~AD~LA~ 132 (140)
T 3u3g_D 82 VRQMQGVYKVKEPTLKEKFAKIAHIKMERVPNLVF--VHIPREKNARADELVN 132 (140)
T ss_dssp HHHHTTSSCCCCGGGHHHHHHHHHHHHHHCTTCEE--EECCGGGGHHHHHHHH
T ss_pred HHHhCCCcccCCHHHHHHHHHHHHHhhcCCCcEEE--EEcCchhhHHHHHHHH
Confidence 9999975445666676777777777 7776 6665 4999999999999987
No 14
>3hst_B Protein RV2228C/MT2287; ribonuclease H1, RV2228C N-terminal domain, fusion protein, maltose binding protein, HYDR; HET: MLR TAR; 2.25A {Mycobacterium tuberculosis}
Probab=98.54 E-value=9.8e-08 Score=92.24 Aligned_cols=118 Identities=19% Similarity=0.200 Sum_probs=84.8
Q ss_pred ceEEEEcCCcc------cceeeecccccc---cccChhhhccccchHhHHHHHHHHHhCCCccCCCeEEEEecChhHHHH
Q psy15121 62 RTFMSTDASDV------GWGAMVGNVSVQ---GVWTQAQRSWHINLKELFTVRAAISSNPSLVANHTVVLQSDNKTVIAY 132 (960)
Q Consensus 62 ~~~v~tDAS~~------G~ga~l~~~~~~---~~~~~~e~~~~i~~~Ellav~~Al~~~~~~~~~~~v~~~~Dn~~av~~ 132 (960)
...+|||+|.. |+|+++...... ..++......+.|.-|+.|++.||+... .+..+++.|+||++.++.+
T Consensus 3 ~~~iy~DGs~~~~~g~~g~G~v~~~~~~~~~~~~~~~~~~~~tn~~aEl~A~~~aL~~a~-~~~~~~v~i~tDS~~vv~~ 81 (141)
T 3hst_B 3 KVVIEADGGSRGNPGPAGYGAVVWTADHSTVLAESKQAIGRATNNVAEYRGLIAGLDDAV-KLGATEAAVLMDSKLVVEQ 81 (141)
T ss_dssp EEEEEEEEEESSSSEEEEEEEEEEETTSCSEEEEEEEEEEEECHHHHHHHHHHHHHHHHH-HHTCSEEEEEESCHHHHHH
T ss_pred EEEEEEecCCCCCCCCcEEEEEEEeCCCCcEEEeeeccCCCCchHHHHHHHHHHHHHHHH-HCCCceEEEEeChHHHHHH
Confidence 45899999954 899998632111 1222223345678899999999997642 2334789999999999999
Q ss_pred HHhhCCCCChhhHHHHHHHHHHHHhcCceEEEEeeCCCchhhhhhhccC
Q psy15121 133 IRKQGGLRSHALLAETKKLLLIMSKLNIHIVPYFIPGKCNSLADALSRQ 181 (960)
Q Consensus 133 ~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~hipg~~N~~ADalSR~ 181 (960)
+++.-..+++.+..+...+..++.++ ..++..|||+..|..||.|.|.
T Consensus 82 i~~~~~~~~~~l~~~~~~i~~l~~~~-~~v~~~~V~~~~N~~AD~LA~~ 129 (141)
T 3hst_B 82 MSGRWKVKHPDLLKLYVQAQALASQF-RRINYEWVPRARNTYADRLAND 129 (141)
T ss_dssp HTTSSCCCSHHHHHHHHHHHHHHTTS-SEEEEEECCGGGCHHHHHHHHH
T ss_pred HhCCcccCCHHHHHHHHHHHHHHhcC-CeEEEEEcCCcccHHHHHHHHH
Confidence 98633355666776666665555443 4588999999999999999874
No 15
>3u3g_D Ribonuclease H, RNAse H1; hydrolase, cleave the RNA strand of RNA/DNA hybrid; 1.40A {Uncultured organism}
Probab=98.50 E-value=1.4e-07 Score=90.76 Aligned_cols=119 Identities=17% Similarity=0.206 Sum_probs=85.8
Q ss_pred ceEEEEcCCc------ccceeeecccccc--cccChhhhccccchHhHHHHHHHHHhCCCc---cCCCeEEEEecChhHH
Q psy15121 62 RTFMSTDASD------VGWGAMVGNVSVQ--GVWTQAQRSWHINLKELFTVRAAISSNPSL---VANHTVVLQSDNKTVI 130 (960)
Q Consensus 62 ~~~v~tDAS~------~G~ga~l~~~~~~--~~~~~~e~~~~i~~~Ellav~~Al~~~~~~---~~~~~v~~~~Dn~~av 130 (960)
...+|||||. .|+|+++.....+ ..++......+.|.-|+.|++.||+..... ..+.++.|+||++.++
T Consensus 3 ~~~iy~DGs~~~n~g~~G~G~v~~~~~g~~~~~~~~~~~~~tn~~aEl~A~~~aL~~a~~~~~~~~~~~v~i~tDS~~vi 82 (140)
T 3u3g_D 3 KIIIYTDGGARGNPGPAGIGVVITDEKGNTLHESSAYIGETTNNVAEYEALIRALEDLQMFGDKLVDMEVEVRMDSELIV 82 (140)
T ss_dssp EEEEEEEEEESSTTEEEEEEEEEECTTSCEEEEEEEEEEEECHHHHHHHHHHHHHHHHGGGGGGGTTCEEEEEESCHHHH
T ss_pred eEEEEEecCCCCCCCCcEEEEEEEeCCCCEEEEEEeeCCCCchHHHHHHHHHHHHHHHHHcCCCCCCceEEEEeChHHHH
Confidence 3479999995 4899998632111 112222223467889999999999764321 1133899999999999
Q ss_pred HHHHhhCCCCChhhHHHHHHHHHH-HHhcCceEEEEeeCCCchhhhhhhccC
Q psy15121 131 AYIRKQGGLRSHALLAETKKLLLI-MSKLNIHIVPYFIPGKCNSLADALSRQ 181 (960)
Q Consensus 131 ~~~~~~~~~~~~~~~~l~~~l~~~-~~~~~~~~~~~hipg~~N~~ADalSR~ 181 (960)
.++++....+++.+..+...+..+ ...+. .++..|||+..|..||.|.+.
T Consensus 83 ~~i~~~~~~~~~~l~~~~~~i~~l~~~~~~-~v~~~~V~~~~N~~AD~LA~~ 133 (140)
T 3u3g_D 83 RQMQGVYKVKEPTLKEKFAKIAHIKMERVP-NLVFVHIPREKNARADELVNE 133 (140)
T ss_dssp HHHTTSSCCCCGGGHHHHHHHHHHHHHHCT-TCEEEECCGGGGHHHHHHHHH
T ss_pred HHhCCCcccCCHHHHHHHHHHHHHhhcCCC-cEEEEEcCchhhHHHHHHHHH
Confidence 999975445677788888888777 66542 477899999999999999863
No 16
>2e4l_A Ribonuclease HI, RNAse HI; hydrolase, endoribonuclease; 2.00A {Shewanella oneidensis} PDB: 2zqb_A
Probab=98.48 E-value=1.4e-07 Score=93.29 Aligned_cols=117 Identities=20% Similarity=0.115 Sum_probs=77.2
Q ss_pred CceEEEeCCCcc------ceeeeEeeeeeccccccccccCChhHHHHHHHHHHHHhCccccCCCeEEEEcCCHHHHHHHH
Q psy15121 807 PRTFMSTDASDV------GWGAMVGNVSVQGVWTQAQRSWHINLKELFTVRAAISSNPSLVANHTVVLQSDNKTVIAYIR 880 (960)
Q Consensus 807 ~~~~l~tDAS~~------g~GavL~q~~~S~~l~~~e~~ysi~~kEllAiv~Al~~~~~~L~g~~~~I~TDh~~l~~~l~ 880 (960)
..+.+|||+|-. |+|+++...-....++.....-+.++.|+.|++.||+.... +.+++|+||++.++..++
T Consensus 5 ~~i~iytDGs~~~n~g~~G~G~v~~~~~~~~~~~~~~~~~tn~~aEl~A~~~AL~~~~~---~~~v~I~tDS~~vi~~i~ 81 (158)
T 2e4l_A 5 KLIHIFTDGSCLGNPGPGGYGIVMNYKGHTKEMSDGFSLTTNNRMELLAPIVALEALKE---PCKIILTSDSQYMRQGIM 81 (158)
T ss_dssp CEEEEEEEEEESSSSEEEEEEEEEEETTEEEEEEEEEEEECHHHHHHHHHHHHHHTCSS---CCEEEEEECCHHHHHHHH
T ss_pred CeEEEEEcccccCCCCcEEEEEEEEECCEEEEEecCcCCCccHHHHHHHHHHHHHHhcc---CCeEEEEeCHHHHHHHHH
Confidence 468899999763 78888853211111222233457889999999999998643 389999999999998777
Q ss_pred h--------cC--CCC-ChhHHHHHHHHHHHHhccCcEEEEEeeCCC----CCCccccccCCC
Q psy15121 881 K--------QG--GLR-SHALLAETKKLLLIMSKLNIHIVPYFIPGK----CNSLADALSRQA 928 (960)
Q Consensus 881 ~--------~~--~~~-~~~l~~~~~r~~~~l~~~~~~i~~~~vpG~----~N~~AD~LSR~~ 928 (960)
. .- ... .......+.++..++..+. |.+.||||+ .|..||.|+|..
T Consensus 82 ~w~~~W~~n~~~~~~g~~v~n~~l~~~i~~l~~~~~--v~~~wV~gH~g~~~Ne~AD~LAk~a 142 (158)
T 2e4l_A 82 TWIHGWKKKGWMTSNRTPVKNVDLWKRLDKAAQLHQ--IDWRWVKGHAGHAENERCDQLARAA 142 (158)
T ss_dssp THHHHHHHTTTBCTTSSBCTTHHHHHHHHHHHTTSE--EEEEECCTTCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHccccccCCCcccCHHHHHHHHHHHccCc--EEEEEccCCCCchhHHHHHHHHHHH
Confidence 5 10 000 0111223445556666654 555699987 588899998843
No 17
>3h08_A RNH (ribonuclease H); RNAse H, 3D-structure, endonuclease, hydrolase, magnesium, metal-binding; 1.60A {Chlorobaculum tepidum}
Probab=98.47 E-value=1e-07 Score=92.93 Aligned_cols=115 Identities=19% Similarity=0.190 Sum_probs=76.9
Q ss_pred CceEEEeCCCc------cceeeeEeeeeeccccccccccCChhHHHHHHHHHHHHhCccccCCCeEEEEcCCHHHHHHHH
Q psy15121 807 PRTFMSTDASD------VGWGAMVGNVSVQGVWTQAQRSWHINLKELFTVRAAISSNPSLVANHTVVLQSDNKTVIAYIR 880 (960)
Q Consensus 807 ~~~~l~tDAS~------~g~GavL~q~~~S~~l~~~e~~ysi~~kEllAiv~Al~~~~~~L~g~~~~I~TDh~~l~~~l~ 880 (960)
.++++|||+|- .|+|+++...-....++......+.++.|+.|++.||+.... ..+++|+||++.++..++
T Consensus 3 ~~i~iytDGs~~~n~g~~g~G~v~~~~~~~~~~~~~~~~~Tnn~aEl~A~~~AL~~~~~---~~~v~I~tDS~~vi~~i~ 79 (146)
T 3h08_A 3 KTITIYTDGAASGNPGKGGWGALLMYGSSRKEISGYDPATTNNRMELMAAIKGLEALKE---PARVQLYSDSAYLVNAMN 79 (146)
T ss_dssp CEEEEEEEEEESSTTEEEEEEEEEEETTEEEEEEEEEEEECHHHHHHHHHHHHHHTCSS---CCEEEEEESCHHHHHHHH
T ss_pred ceEEEEEecCCCCCCCceEEEEEEEECCeeEEeecCCCCCcHHHHHHHHHHHHHHhcCc---cCcEEEEeChHHHHHHHH
Confidence 46899999983 578888764311112233334567889999999999998764 589999999999988777
Q ss_pred hc------------CCCCChhHHHHHHHHHHHHhccCcEEEEEeeCCC----CCCccccccC
Q psy15121 881 KQ------------GGLRSHALLAETKKLLLIMSKLNIHIVPYFIPGK----CNSLADALSR 926 (960)
Q Consensus 881 ~~------------~~~~~~~l~~~~~r~~~~l~~~~~~i~~~~vpG~----~N~~AD~LSR 926 (960)
+. ...........+.++..++..+.+. +.||||+ .|..||.|+|
T Consensus 80 ~~w~~~W~~~~w~~~~~~~v~n~~l~~~~~~~~~~~~v~--~~~V~gH~g~~~N~~AD~LA~ 139 (146)
T 3h08_A 80 EGWLKRWVKNGWKTAAKKPVENIDLWQEILKLTTLHRVT--FHKVKGHSDNPYNSRADELAR 139 (146)
T ss_dssp SSHHHHHHHTTCC----CCCTTHHHHHHHHHHHHHSEEE--EEECCC-CCSHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCccCCCCCcCCHHHHHHHHHHHhhCceE--EEEcCCcCCcHhHHHHHHHHH
Confidence 51 0000111123455566666666655 4699976 4778999887
No 18
>2ehg_A Ribonuclease HI; RNAse HI, hyperthermophilic archaeon, D stranded RNA-dependent RNAse, hydrolase; 1.60A {Sulfolobus tokodaii} PDB: 3aly_A
Probab=98.46 E-value=1.3e-07 Score=92.57 Aligned_cols=115 Identities=16% Similarity=0.127 Sum_probs=84.0
Q ss_pred EEEEcCCcc-------cc-eeeecccccc-cccC----hhhhccccchHhHHHHHHHHHhCCCccCCCeEEEEecChhHH
Q psy15121 64 FMSTDASDV-------GW-GAMVGNVSVQ-GVWT----QAQRSWHINLKELFTVRAAISSNPSLVANHTVVLQSDNKTVI 130 (960)
Q Consensus 64 ~v~tDAS~~-------G~-ga~l~~~~~~-~~~~----~~e~~~~i~~~Ellav~~Al~~~~~~~~~~~v~~~~Dn~~av 130 (960)
.+|||+|.. |+ |+++...... ...+ ..+...+.|.-|+.|++.||+.... +..+++.|+||++.++
T Consensus 3 ~iy~DGs~~~~n~g~~G~~G~vi~~~g~~~~~~~~~~~~~~~~~tnn~aEl~A~~~aL~~a~~-~g~~~v~i~tDS~~vi 81 (149)
T 2ehg_A 3 IGYFDGLCEPKNPGGIATFGFVIYLDNRKIEGYGLAEKPFSINSTNNVAEYSGLICLMETMLR-LGISSPIIKGDSQLVI 81 (149)
T ss_dssp EEEEEEEEESSSSSSEEEEEEEEECSSCEEEEEEECSCTTCTTCCHHHHHHHHHHHHHHHHHH-HTCCSCEEEESCHHHH
T ss_pred EEEEeeccCCCCCChheEEEEEEEECCEEEEEeccccCCCCCCccHHHHHHHHHHHHHHHHHH-cCCCEEEEEeChHHHH
Confidence 689999965 54 8888631100 0011 1112456788999999999976432 2336799999999999
Q ss_pred HHHHhhCCCCChhhHHHHHHHHHHHHhcCceEEEEeeCCCchhhhhhhccC
Q psy15121 131 AYIRKQGGLRSHALLAETKKLLLIMSKLNIHIVPYFIPGKCNSLADALSRQ 181 (960)
Q Consensus 131 ~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~hipg~~N~~ADalSR~ 181 (960)
.++++.-..+++.+..+...+..+...++ ++..||||..|..||+|+|.
T Consensus 82 ~~i~~~w~~~~~~~~~l~~~i~~l~~~~~--v~~~~V~~~~N~~AD~LA~~ 130 (149)
T 2ehg_A 82 KQMNGEYKVKAKRIIPLYEKAIELKKKLN--ATLIWVPREENKEADRLSRV 130 (149)
T ss_dssp HHHTTSSCCCCTTHHHHHHHHHHHHHHHT--CEEEECCGGGCHHHHHHHHH
T ss_pred HHHhCccccCCHHHHHHHHHHHHHHhcCC--EEEEEcCCcccHHHHHHHHH
Confidence 99987433455678888888888888775 78899999999999999974
No 19
>1jl1_A Ribonuclease HI; RNAse HI, protein stability, thermostability, hydrogen exchange, cooperativity, hydrolase; 1.30A {Escherichia coli} SCOP: c.55.3.1 PDB: 1f21_A 1jxb_A 1g15_A 1rch_A 1rdd_A 1rnh_A* 2rn2_A 1rda_A 1law_A 1rdb_A 1lav_A 3aa4_A 1rbu_A 1gob_A 1rdc_A 1kvc_A 3aa3_A 3aa2_A 3aa5_X 1rbv_A ...
Probab=98.44 E-value=1.9e-07 Score=91.87 Aligned_cols=117 Identities=20% Similarity=0.183 Sum_probs=77.7
Q ss_pred CceEEEeCCCc------cceeeeEeeeeeccccccccccCChhHHHHHHHHHHHHhCccccCCCeEEEEcCCHHHHHHHH
Q psy15121 807 PRTFMSTDASD------VGWGAMVGNVSVQGVWTQAQRSWHINLKELFTVRAAISSNPSLVANHTVVLQSDNKTVIAYIR 880 (960)
Q Consensus 807 ~~~~l~tDAS~------~g~GavL~q~~~S~~l~~~e~~ysi~~kEllAiv~Al~~~~~~L~g~~~~I~TDh~~l~~~l~ 880 (960)
..+.+|||+|- .|+|+++...-....++......+.++.|+.|++.||+.... ..+++|+|||+.++..++
T Consensus 3 ~~~~iytDGs~~~n~~~~G~G~v~~~~~~~~~~~~~~~~~tn~~aEl~A~~~aL~~~~~---~~~v~I~tDS~~vi~~i~ 79 (155)
T 1jl1_A 3 KQVEIFTAGSALGNPGPGGYGAILRYRGREKTFSAGYTRTTNNRMELMAAIVALEALKE---HAEVILSTDSQYVRQGIT 79 (155)
T ss_dssp CCEEEEEEEEESSTTEEEEEEEEEEETTEEEEEEEEEEEECHHHHHHHHHHHHHHTCCS---CCEEEEEECCHHHHHHHH
T ss_pred ceEEEEEccccCCCCCceEEEEEEEECCeEEEEecCCCCCcHHHHHHHHHHHHHHHhCc---CCcEEEEeCHHHHHHHHH
Confidence 35789999976 368888864211112222233457889999999999998654 378999999999998888
Q ss_pred h--------c--CCCCCh-hHHHHHHHHHHHHhccCcEEEEEeeCCC----CCCccccccCCC
Q psy15121 881 K--------Q--GGLRSH-ALLAETKKLLLIMSKLNIHIVPYFIPGK----CNSLADALSRQA 928 (960)
Q Consensus 881 ~--------~--~~~~~~-~l~~~~~r~~~~l~~~~~~i~~~~vpG~----~N~~AD~LSR~~ 928 (960)
. . .....+ .....+.++..++..+. |.+.||||+ .|..||.|++..
T Consensus 80 ~w~~~W~~n~~~~~~g~~v~n~~l~~~i~~l~~~~~--v~~~wV~gH~g~~~Ne~AD~LA~~a 140 (155)
T 1jl1_A 80 QWIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQHQ--IKWEWVKGHAGHPENERADELARAA 140 (155)
T ss_dssp TTHHHHHHTTTBCTTSCBCTTHHHHHHHHHHTTTCE--EEEEECCSSTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhhcccccccCCccCCHHHHHHHHHHHccCc--eEEEEcCCCCCCHHHHHHHHHHHHH
Confidence 5 1 000001 11233445555566554 555699987 588899999843
No 20
>1ril_A Ribonuclease H; hydrolase(endoribonuclease); 2.80A {Thermus thermophilus} SCOP: c.55.3.1 PDB: 2rpi_A
Probab=98.44 E-value=8.4e-08 Score=95.55 Aligned_cols=117 Identities=18% Similarity=0.136 Sum_probs=78.0
Q ss_pred CceEEEeCCCc------cceeeeEeeeeeccccccccccCChhHHHHHHHHHHHHhCccccCCCeEEEEcCCHHHHHHHH
Q psy15121 807 PRTFMSTDASD------VGWGAMVGNVSVQGVWTQAQRSWHINLKELFTVRAAISSNPSLVANHTVVLQSDNKTVIAYIR 880 (960)
Q Consensus 807 ~~~~l~tDAS~------~g~GavL~q~~~S~~l~~~e~~ysi~~kEllAiv~Al~~~~~~L~g~~~~I~TDh~~l~~~l~ 880 (960)
..+.||||+|- .|+|+++...-....++......+.++.|+.|++.||+.... ..+++|+|||+.++..++
T Consensus 7 ~~i~iytDGs~~~n~g~~G~G~v~~~~~~~~~~~~~~~~~Tnn~aEl~Ai~~AL~~~~~---~~~v~I~tDS~~vi~~i~ 83 (166)
T 1ril_A 7 KRVALFTDGACLGNPGPGGWAALLRFHAHEKLLSGGEACTTNNRMELKAAIEGLKALKE---PCEVDLYTDSHYLKKAFT 83 (166)
T ss_dssp CCCCEEEEEEESSTTEEEEEEEEECBTTBCCEECCEEEEECHHHHHHHHHHHHHHSCCS---CCEEEEECCCHHHHHHHH
T ss_pred ccEEEEECccccCCCCCEEEEEEEEECCEEEEEecCCCCCcHHHHHHHHHHHHHHHhcc---CCeEEEEeChHHHHHHHh
Confidence 56889999976 368888853211112233334567889999999999997654 358999999999998777
Q ss_pred hc-----------CCCCC-hhHHHHHHHHHHHHhccCcEEEEEeeCCC----CCCccccccCCC
Q psy15121 881 KQ-----------GGLRS-HALLAETKKLLLIMSKLNIHIVPYFIPGK----CNSLADALSRQA 928 (960)
Q Consensus 881 ~~-----------~~~~~-~~l~~~~~r~~~~l~~~~~~i~~~~vpG~----~N~~AD~LSR~~ 928 (960)
+. ..... ......+.++..++..+ .|.+.||||+ .|..||.|++..
T Consensus 84 ~~w~~~W~~~~w~~~~g~~v~n~~l~~~i~~l~~~~--~v~~~wV~gH~g~~~Ne~AD~LAk~a 145 (166)
T 1ril_A 84 EGWLEGWRKRGWRTAEGKPVKNRDLWEALLLAMAPH--RVRFHFVKGHTGHPENERVDREARRQ 145 (166)
T ss_dssp SSHHHHHHHTTSBCTTSSBCTTHHHHHHHHHHHTTS--EEECCCCCGGGSCTHHHHHHHHHHHH
T ss_pred hhHHHHHHhcccccccCCccCcHHHHHHHHHHHhcC--eEEEEEeeCCCCchhHHHHHHHHHHH
Confidence 51 00000 11123445555666665 4556699965 688999999854
No 21
>3p1g_A Xenotropic murine leukemia virus-related virus (X H domain; XMRV, RNAse H, reverse transcriptase, transcription; 1.50A {Xenotropic mulv-related virus} PDB: 3v1q_A 3v1o_A 3v1r_A* 2hb5_A 4e89_A
Probab=98.44 E-value=4e-07 Score=90.31 Aligned_cols=116 Identities=18% Similarity=0.141 Sum_probs=75.4
Q ss_pred CCCCceEEEeCCCcc------ceeeeEeeeeeccccccccccCChhHHHHHHHHHHHHhCccccCCCeEEEEcCCHHHHH
Q psy15121 804 PPVPRTFMSTDASDV------GWGAMVGNVSVQGVWTQAQRSWHINLKELFTVRAAISSNPSLVANHTVVLQSDNKTVIA 877 (960)
Q Consensus 804 ~p~~~~~l~tDAS~~------g~GavL~q~~~S~~l~~~e~~ysi~~kEllAiv~Al~~~~~~L~g~~~~I~TDh~~l~~ 877 (960)
.|...+.+|||+|.. |+|+++...-............+.++.|+.|++.||+.. ...++.|+||++.++.
T Consensus 19 ~~~~~i~iytDGs~~~npG~~g~G~vi~~~~~~~~~~~~~~~~Tnn~aEl~Ai~~AL~~~----~~~~v~I~tDS~~vi~ 94 (165)
T 3p1g_A 19 IPDADYTWYTDGSSFLQEGQRRAGAAVTTETEVIWARALPAGTSAQRAELIALTQALKMA----EGKKLNVYTDSRYAFA 94 (165)
T ss_dssp CTTCSEEEEEEEEEEEETTEEEEEEEEECSSCEEEEEEECTTCCHHHHHHHHHHHHHHHT----BTSEEEEEECCHHHHH
T ss_pred CCCCCEEEEEEcccCCCCCceEEEEEEEECCEEEEEecCCCCCcHHHHHHHHHHHHHHHc----cCceEEEEEchHHHHh
Confidence 344569999999864 678877642000011122334578999999999999987 3689999999998887
Q ss_pred HHHhc---CCCCChhHHHHHHHHHHHHhccCcEEEEEeeCCCC---------CCccccccCC
Q psy15121 878 YIRKQ---GGLRSHALLAETKKLLLIMSKLNIHIVPYFIPGKC---------NSLADALSRQ 927 (960)
Q Consensus 878 ~l~~~---~~~~~~~l~~~~~r~~~~l~~~~~~i~~~~vpG~~---------N~~AD~LSR~ 927 (960)
.+-.. +..++. ..+++....+.. ...|.+.||+|+. |..||.|+|.
T Consensus 95 ~iw~~~~g~~v~n~---dl~~~l~~~l~~-~~~v~~~wVkgH~g~~~~~~~gNe~AD~LA~~ 152 (165)
T 3p1g_A 95 TAHVHSEGREIKNK---NEILALLKALFL-PKRLSIIHCPGHQKGNSAEARGNRMADQAARE 152 (165)
T ss_dssp HHHSCCCSCCCSSH---HHHHHHHHHTTS-BSEEEEEECCSSCCSCSHHHHHHHHHHHHHHH
T ss_pred hhhcccCCCcccCH---HHHHHHHHHHhc-CCceEEEEecCCCCCCcCcchHHHHHHHHHHH
Confidence 66321 112221 223333333333 2355567999998 7899999984
No 22
>2qkb_A Ribonuclease H1, HS-RNAse HC, RNAse H1; RNA/DNA hybrid; 2.40A {Homo sapiens} PDB: 2qk9_A 2qkk_A*
Probab=98.37 E-value=3.3e-07 Score=90.09 Aligned_cols=115 Identities=19% Similarity=0.133 Sum_probs=77.0
Q ss_pred CceEEEeCCCc---------cceeeeEeee---eeccccccccccCChhHHHHHHHHHHHHhCccccCCCeEEEEcCCHH
Q psy15121 807 PRTFMSTDASD---------VGWGAMVGNV---SVQGVWTQAQRSWHINLKELFTVRAAISSNPSLVANHTVVLQSDNKT 874 (960)
Q Consensus 807 ~~~~l~tDAS~---------~g~GavL~q~---~~S~~l~~~e~~ysi~~kEllAiv~Al~~~~~~L~g~~~~I~TDh~~ 874 (960)
..+.+|||+|- .|+|+++... ..+..+.. ..+.++.|+.|++.||+.... ....+++|+||++.
T Consensus 6 ~~~~iytDGs~~~n~~~~~~aG~Gvv~~~~~~~~~~~~l~~---~~tn~~aEl~A~~~aL~~~~~-~~~~~v~i~tDS~~ 81 (154)
T 2qkb_A 6 DFVVVYTDGCCSSNGRRRPRAGIGVYWGPGHPLNVGIRLPG---RQTNQRAEIHAACKAIEQAKT-QNINKLVLYTNSMF 81 (154)
T ss_dssp TEEEEEEEEEEETTTSSSCEEEEEEECSTTCTTCEEEECCS---SCCHHHHHHHHHHHHHHHHHH-TTCCEEEEEESCHH
T ss_pred CeEEEEEccCcCCCCCCCCcEEEEEEEECCCceeEEeecCC---CCchHHHHHHHHHHHHHHHHh-CCCceEEEEECcHH
Confidence 45789999974 3677776532 12333322 357889999999999997643 23478999999999
Q ss_pred HHHHHHhc----------CCCC-ChhHHHHHHHHHHHHhccCcEEEEEeeCCCC----CCccccccCC
Q psy15121 875 VIAYIRKQ----------GGLR-SHALLAETKKLLLIMSKLNIHIVPYFIPGKC----NSLADALSRQ 927 (960)
Q Consensus 875 l~~~l~~~----------~~~~-~~~l~~~~~r~~~~l~~~~~~i~~~~vpG~~----N~~AD~LSR~ 927 (960)
++..+++. .... .......+.++..++..+. |.+.||||+. |..||.|+|.
T Consensus 82 vi~~i~~~~~~w~~~~w~~~~~~~~~n~~l~~~i~~l~~~~~--v~~~~V~~H~g~~~N~~AD~LA~~ 147 (154)
T 2qkb_A 82 TINGITNWVQGWKKNGWKTSAGKEVINKEDFVALERLTQGMD--IQWMHVPGHSGFIGNEEADRLARE 147 (154)
T ss_dssp HHHHHHTHHHHHHTTTSBCTTSSBCTTHHHHHHHHHHHTTCE--EEEEECCTTSSCHHHHHHHHHHHH
T ss_pred HHhhhhhhHHHHHhccccccCCCccccHHHHHHHHHHHcCCc--eEEEEccCCCCCHhHHHHHHHHHH
Confidence 98777751 0111 1112234556666666665 4556999977 9999999873
No 23
>3qio_A GAG-POL polyprotein; RNAse H, inhibitor, nuclease, transferase, hydrolase- complex; HET: QID; 1.40A {Hiv-1 M} SCOP: c.55.3.1 PDB: 3qin_A* 3hyf_A* 1o1w_A 3lp3_A* 1hrh_A 3k2p_A* 1rdh_A
Probab=98.35 E-value=7.2e-07 Score=87.14 Aligned_cols=114 Identities=13% Similarity=0.102 Sum_probs=75.3
Q ss_pred CceEEEeCCCc------cceeeeEeeeeeccccccccccCChhHHHHHHHHHHHHhCccccCCCeEEEEcCCHHHHHHHH
Q psy15121 807 PRTFMSTDASD------VGWGAMVGNVSVQGVWTQAQRSWHINLKELFTVRAAISSNPSLVANHTVVLQSDNKTVIAYIR 880 (960)
Q Consensus 807 ~~~~l~tDAS~------~g~GavL~q~~~S~~l~~~e~~ysi~~kEllAiv~Al~~~~~~L~g~~~~I~TDh~~l~~~l~ 880 (960)
..+.+|||+|. .|+|+++.... ...+ .....+.++.|+.|++.||+.. +.+++|+|||+.++..++
T Consensus 11 ~~~~iytDGs~~~n~g~~g~G~v~~~~~-~~~~--~~~~~Tnn~aEl~A~i~AL~~~-----~~~v~i~tDS~~v~~~i~ 82 (150)
T 3qio_A 11 GAETFYVDGAANRETKLGKAGYVTNRGR-QKVV--TLTDTTNQKTELQAIYLALQDS-----GLEVNIVTDSQYALGIIT 82 (150)
T ss_dssp TCEEEEEEEEECTTTCCEEEEEEETTSC-EEEE--EESSCCHHHHHHHHHHHHHHHS-----CSEEEEEESCHHHHHHHH
T ss_pred CCEEEEEccCCCCCCCCeEEEEEEEcCC-EEEE--eCCCCCHHHHHHHHHHHHHHhC-----CCcEEEEeCcHHHHHHHH
Confidence 45899999984 57888775421 1111 1345688899999999999983 589999999999988777
Q ss_pred hc----------CCCCCh-hHHHHHHHHHHHHhccCcEEEEEeeCCCC----CCccccccCCCC
Q psy15121 881 KQ----------GGLRSH-ALLAETKKLLLIMSKLNIHIVPYFIPGKC----NSLADALSRQAL 929 (960)
Q Consensus 881 ~~----------~~~~~~-~l~~~~~r~~~~l~~~~~~i~~~~vpG~~----N~~AD~LSR~~~ 929 (960)
+. .....+ .....+.+....+.++ ..|.+.||||+. |..||.|+|...
T Consensus 83 ~w~~~W~~~gw~~~~g~~v~n~~l~~~l~~~l~~~-~~v~~~wV~gH~g~~~Ne~AD~LA~~a~ 145 (150)
T 3qio_A 83 QWIHNWKKRGWKTADKKPVKNVDLVNQIIEQLIKK-EKVYLAWVPAHKGIGGNEQVDKLVSAGI 145 (150)
T ss_dssp HHHHHHCC------------CHHHHHHHHHHHTTC-SEEEEEECCTTSCCHHHHHHHHHHHTTT
T ss_pred HHHHHHhhcCcCcCcCcccccHHHHHHHHHHHhhc-CceEEEEccCcCCChhHHHHHHHHHHHH
Confidence 52 000000 1112333444444443 356667999999 999999998543
No 24
>2lsn_A Reverse transcriptase; RNAse H, viral protein; NMR {Simian foamy virus}
Probab=98.27 E-value=4.9e-07 Score=89.53 Aligned_cols=115 Identities=22% Similarity=0.205 Sum_probs=71.1
Q ss_pred CCCceEEEeCCCc-----------cceeeeEeee----eeccccccccccCChhHHHHHHHHHHHHhCccccCCCeEEEE
Q psy15121 805 PVPRTFMSTDASD-----------VGWGAMVGNV----SVQGVWTQAQRSWHINLKELFTVRAAISSNPSLVANHTVVLQ 869 (960)
Q Consensus 805 p~~~~~l~tDAS~-----------~g~GavL~q~----~~S~~l~~~e~~ysi~~kEllAiv~Al~~~~~~L~g~~~~I~ 869 (960)
...+.+||||+|. .|+|+++... ..++.+.....+-.-...|+.|+..|++... -.+.+++|+
T Consensus 4 ~~~evviYTDGsc~gNpgp~~~~~aG~Gv~~~~~~~~~~~~~~~~~~tnn~te~~Aei~Al~~al~~al--~~~~~v~I~ 81 (165)
T 2lsn_A 4 GQYEGVFYTDGSAIKSPDPTKSNNAGMGIVHATYKPEYQVLNQWSIPLGNHTAQMAEIAAVEFACKKAL--KIPGPVLVI 81 (165)
T ss_dssp CCCSEEEEEEEEEEECSSCTTCEEEEEEEEEECCSSSCCEEEEEEEEESSCCHHHHHHHHHHHHHHHHH--HSSSCEEEE
T ss_pred CCceEEEEEcCCCCCCCCCCCCCcEEEEEEEEECCCccEEeccccCCchHHHHHHHHHHHHHHHHHHHh--cCCCeEEEE
Confidence 4578899999982 5788887632 1222223223334444556666666655421 145689999
Q ss_pred cCCHHHHHHHHh----------c----CCCCChhHHHHHHHHHHHHhc-cCcEEEEEeeCCCC----------CCccccc
Q psy15121 870 SDNKTVIAYIRK----------Q----GGLRSHALLAETKKLLLIMSK-LNIHIVPYFIPGKC----------NSLADAL 924 (960)
Q Consensus 870 TDh~~l~~~l~~----------~----~~~~~~~l~~~~~r~~~~l~~-~~~~i~~~~vpG~~----------N~~AD~L 924 (960)
|||+.++..++. + +..++. ..+.++...+.. .++.+ .||+|+. |..||.|
T Consensus 82 TDS~Yvi~~it~w~~~Wk~ngw~~~~~~pVkN~---dL~~~l~~~~~~~~~v~~--~~VkgH~g~~~~~~~~gNe~AD~L 156 (165)
T 2lsn_A 82 TDSFYVAESANKELPYWKSNGFVNNKKKPLKHI---SKWKSIAECLSMKPDITI--QHEKGHQPTNTSIHTEGNALADKL 156 (165)
T ss_dssp ESCHHHHHHHHTHHHHHHHTTSCSCSSSCCSSH---HHHHHHHHHHHHCTTCEE--EECCSSSCSSSCHHHHHHHHHHHH
T ss_pred eChHHHHhhhhhhhhhheeccccccCCCcccCH---HHHHHHHHHHhCCCCEEE--EEEeCCCCccCCCCChHHHHHHHH
Confidence 999999877763 0 112222 234455555554 36665 4999985 7789998
Q ss_pred cC
Q psy15121 925 SR 926 (960)
Q Consensus 925 SR 926 (960)
+|
T Consensus 157 A~ 158 (165)
T 2lsn_A 157 AT 158 (165)
T ss_dssp HH
T ss_pred HH
Confidence 87
No 25
>2e4l_A Ribonuclease HI, RNAse HI; hydrolase, endoribonuclease; 2.00A {Shewanella oneidensis} PDB: 2zqb_A
Probab=98.24 E-value=2.6e-06 Score=84.03 Aligned_cols=116 Identities=21% Similarity=0.156 Sum_probs=76.9
Q ss_pred ceEEEEcCCcc------cceeeecccccccccChhhhccccchHhHHHHHHHHHhCCCccCCCeEEEEecChhHHHHHHh
Q psy15121 62 RTFMSTDASDV------GWGAMVGNVSVQGVWTQAQRSWHINLKELFTVRAAISSNPSLVANHTVVLQSDNKTVIAYIRK 135 (960)
Q Consensus 62 ~~~v~tDAS~~------G~ga~l~~~~~~~~~~~~e~~~~i~~~Ellav~~Al~~~~~~~~~~~v~~~~Dn~~av~~~~~ 135 (960)
...+|||+|.. |+|+++.........+......+.|.-||.|++.||+.-.. +++|.|+||++.++.-+++
T Consensus 6 ~i~iytDGs~~~n~g~~G~G~v~~~~~~~~~~~~~~~~~tn~~aEl~A~~~AL~~~~~---~~~v~I~tDS~~vi~~i~~ 82 (158)
T 2e4l_A 6 LIHIFTDGSCLGNPGPGGYGIVMNYKGHTKEMSDGFSLTTNNRMELLAPIVALEALKE---PCKIILTSDSQYMRQGIMT 82 (158)
T ss_dssp EEEEEEEEEESSSSEEEEEEEEEEETTEEEEEEEEEEEECHHHHHHHHHHHHHHTCSS---CCEEEEEECCHHHHHHHHT
T ss_pred eEEEEEcccccCCCCcEEEEEEEEECCEEEEEecCcCCCccHHHHHHHHHHHHHHhcc---CCeEEEEeCHHHHHHHHHH
Confidence 45899999964 78999853211111222222345677899999999987532 4889999999999887765
Q ss_pred -------hC---CCC-ChhhHHHHHHHHHHHHhcCceEEEEeeCCC----chhhhhhhccCC
Q psy15121 136 -------QG---GLR-SHALLAETKKLLLIMSKLNIHIVPYFIPGK----CNSLADALSRQA 182 (960)
Q Consensus 136 -------~~---~~~-~~~~~~l~~~l~~~~~~~~~~~~~~hipg~----~N~~ADalSR~~ 182 (960)
.+ +.. .-....+...+..++.. +.++..||||. .|..||.|.|.-
T Consensus 83 w~~~W~~n~~~~~~g~~v~n~~l~~~i~~l~~~--~~v~~~wV~gH~g~~~Ne~AD~LAk~a 142 (158)
T 2e4l_A 83 WIHGWKKKGWMTSNRTPVKNVDLWKRLDKAAQL--HQIDWRWVKGHAGHAENERCDQLARAA 142 (158)
T ss_dssp HHHHHHHTTTBCTTSSBCTTHHHHHHHHHHHTT--SEEEEEECCTTCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHccccccCCCcccCHHHHHHHHHHHcc--CcEEEEEccCCCCchhHHHHHHHHHHH
Confidence 01 010 11234555555555543 46888999965 899999998754
No 26
>1ril_A Ribonuclease H; hydrolase(endoribonuclease); 2.80A {Thermus thermophilus} SCOP: c.55.3.1 PDB: 2rpi_A
Probab=98.23 E-value=2e-06 Score=85.50 Aligned_cols=117 Identities=19% Similarity=0.168 Sum_probs=78.1
Q ss_pred CceEEEEcCCcc------cceeeecccccccccChhhhccccchHhHHHHHHHHHhCCCccCCCeEEEEecChhHHHHHH
Q psy15121 61 PRTFMSTDASDV------GWGAMVGNVSVQGVWTQAQRSWHINLKELFTVRAAISSNPSLVANHTVVLQSDNKTVIAYIR 134 (960)
Q Consensus 61 ~~~~v~tDAS~~------G~ga~l~~~~~~~~~~~~e~~~~i~~~Ellav~~Al~~~~~~~~~~~v~~~~Dn~~av~~~~ 134 (960)
....||||+|.. |+|+++.........+..+...+.|.-||.|++.||+.... .++|.|+||++.++..++
T Consensus 7 ~~i~iytDGs~~~n~g~~G~G~v~~~~~~~~~~~~~~~~~Tnn~aEl~Ai~~AL~~~~~---~~~v~I~tDS~~vi~~i~ 83 (166)
T 1ril_A 7 KRVALFTDGACLGNPGPGGWAALLRFHAHEKLLSGGEACTTNNRMELKAAIEGLKALKE---PCEVDLYTDSHYLKKAFT 83 (166)
T ss_dssp CCCCEEEEEEESSTTEEEEEEEEECBTTBCCEECCEEEEECHHHHHHHHHHHHHHSCCS---CCEEEEECCCHHHHHHHH
T ss_pred ccEEEEECccccCCCCCEEEEEEEEECCEEEEEecCCCCCcHHHHHHHHHHHHHHHhcc---CCeEEEEeChHHHHHHHh
Confidence 455899999964 68898863211112232233446778899999999987543 358999999999987776
Q ss_pred hh--------C---CCCC-hhhHHHHHHHHHHHHhcCceEEEEeeCC----CchhhhhhhccCC
Q psy15121 135 KQ--------G---GLRS-HALLAETKKLLLIMSKLNIHIVPYFIPG----KCNSLADALSRQA 182 (960)
Q Consensus 135 ~~--------~---~~~~-~~~~~l~~~l~~~~~~~~~~~~~~hipg----~~N~~ADalSR~~ 182 (960)
+. + +... -...++...+..++.. +.++..|||| ..|..||.|.|.-
T Consensus 84 ~~w~~~W~~~~w~~~~g~~v~n~~l~~~i~~l~~~--~~v~~~wV~gH~g~~~Ne~AD~LAk~a 145 (166)
T 1ril_A 84 EGWLEGWRKRGWRTAEGKPVKNRDLWEALLLAMAP--HRVRFHFVKGHTGHPENERVDREARRQ 145 (166)
T ss_dssp SSHHHHHHHTTSBCTTSSBCTTHHHHHHHHHHHTT--SEEECCCCCGGGSCTHHHHHHHHHHHH
T ss_pred hhHHHHHHhcccccccCCccCcHHHHHHHHHHHhc--CeEEEEEeeCCCCchhHHHHHHHHHHH
Confidence 50 0 1101 1234566666555544 4688899994 5999999999754
No 27
>2kq2_A Ribonuclease H-related protein; PSI, NESG, protein structure, APO enzyme, structural genomics, protein structure initiative; NMR {Desulfitobacterium hafniense dcb-2} PDB: 2kw4_A
Probab=98.22 E-value=1.8e-07 Score=91.28 Aligned_cols=118 Identities=10% Similarity=0.012 Sum_probs=74.5
Q ss_pred CCCceEEEeCCCc----cceeeeEeee----eecc-cccccc-ccCChhHHHHHHHHHHHHhCccccCCCeEEEEcCCHH
Q psy15121 805 PVPRTFMSTDASD----VGWGAMVGNV----SVQG-VWTQAQ-RSWHINLKELFTVRAAISSNPSLVANHTVVLQSDNKT 874 (960)
Q Consensus 805 p~~~~~l~tDAS~----~g~GavL~q~----~~S~-~l~~~e-~~ysi~~kEllAiv~Al~~~~~~L~g~~~~I~TDh~~ 874 (960)
|...+.+|||+|- .|+|+++... ..++ .....+ ...+.++.|+.|++.||+.... .+.+++|+||++.
T Consensus 3 ~~~~i~iytDGs~~~g~~G~G~vi~~~g~~~~~~~~~~~~~~~~~~tNn~aEl~A~~~AL~~a~~--~~~~v~I~tDS~~ 80 (147)
T 2kq2_A 3 DRTEYDVYTDGSYVNGQYAWAYAFVKDGKVHYEDADVGKNPAAATMRNVAGEIAAALYAVKKASQ--LGVKIRILHDYAG 80 (147)
T ss_dssp TTSCCEEECCCCCBTTBCEEEEEEEETTEEEEEEEEECCCGGGGGTCTTHHHHHHHHHHHHHHHH--HTCCCCBSSCCST
T ss_pred CCCeEEEEECCCCCCCCcEEEEEEEECCEEEEEEeccccccccccccHHHHHHHHHHHHHHHHHH--CCCeEEEEECcHH
Confidence 4557899999986 7899998642 1222 221122 1357899999999999986332 2348999999998
Q ss_pred HHHHHHhcCCCCChhHHHHHHHHHHHHhccCcEEEEEeeCCCC----CCccccccCCC
Q psy15121 875 VIAYIRKQGGLRSHALLAETKKLLLIMSKLNIHIVPYFIPGKC----NSLADALSRQA 928 (960)
Q Consensus 875 l~~~l~~~~~~~~~~l~~~~~r~~~~l~~~~~~i~~~~vpG~~----N~~AD~LSR~~ 928 (960)
+..|+.+.-........ ...+++.+..-.|.+.||||+. |..||.|+|..
T Consensus 81 i~~w~~~~w~~~~~~~~----~~~~l~~~l~~~v~~~wV~gH~g~~~Ne~AD~LA~~a 134 (147)
T 2kq2_A 81 IAFWATGEWKAKNEFTQ----AYAKLMNQYRGIYSFEKVKAHSGNEFNDYVDMKAKSA 134 (147)
T ss_dssp HHHHTTSSSSCCHHHHH----HHHCGGGGGSTTCCBCCCCCCCCCHHHHHHHHHHHHH
T ss_pred HHHHHhCCCccCCcchH----HHHHHHHHhcCCeeEEEecCcCCCcchHHHHHHHHHH
Confidence 88877643222222222 2222222221133345999976 88899999843
No 28
>3h08_A RNH (ribonuclease H); RNAse H, 3D-structure, endonuclease, hydrolase, magnesium, metal-binding; 1.60A {Chlorobaculum tepidum}
Probab=98.17 E-value=3e-06 Score=82.44 Aligned_cols=115 Identities=18% Similarity=0.170 Sum_probs=78.5
Q ss_pred ceEEEEcCCc------ccceeeecccccccccChhhhccccchHhHHHHHHHHHhCCCccCCCeEEEEecChhHHHHHHh
Q psy15121 62 RTFMSTDASD------VGWGAMVGNVSVQGVWTQAQRSWHINLKELFTVRAAISSNPSLVANHTVVLQSDNKTVIAYIRK 135 (960)
Q Consensus 62 ~~~v~tDAS~------~G~ga~l~~~~~~~~~~~~e~~~~i~~~Ellav~~Al~~~~~~~~~~~v~~~~Dn~~av~~~~~ 135 (960)
...+|||+|. -|+|+++.........+......+.|.-||.|++.||+.-.. .++|.|+||++.++.-+++
T Consensus 4 ~i~iytDGs~~~n~g~~g~G~v~~~~~~~~~~~~~~~~~Tnn~aEl~A~~~AL~~~~~---~~~v~I~tDS~~vi~~i~~ 80 (146)
T 3h08_A 4 TITIYTDGAASGNPGKGGWGALLMYGSSRKEISGYDPATTNNRMELMAAIKGLEALKE---PARVQLYSDSAYLVNAMNE 80 (146)
T ss_dssp EEEEEEEEEESSTTEEEEEEEEEEETTEEEEEEEEEEEECHHHHHHHHHHHHHHTCSS---CCEEEEEESCHHHHHHHHS
T ss_pred eEEEEEecCCCCCCCceEEEEEEEECCeeEEeecCCCCCcHHHHHHHHHHHHHHhcCc---cCcEEEEeChHHHHHHHHH
Confidence 3589999993 478888863211111222223445678999999999998654 6889999999988887764
Q ss_pred h-------C----CC-CChhhHHHHHHHHHHHHhcCceEEEEeeC----CCchhhhhhhccC
Q psy15121 136 Q-------G----GL-RSHALLAETKKLLLIMSKLNIHIVPYFIP----GKCNSLADALSRQ 181 (960)
Q Consensus 136 ~-------~----~~-~~~~~~~l~~~l~~~~~~~~~~~~~~hip----g~~N~~ADalSR~ 181 (960)
. . +. .......+...+..+...+ .++..||| -..|..||.|.|.
T Consensus 81 ~w~~~W~~~~w~~~~~~~v~n~~l~~~~~~~~~~~--~v~~~~V~gH~g~~~N~~AD~LA~~ 140 (146)
T 3h08_A 81 GWLKRWVKNGWKTAAKKPVENIDLWQEILKLTTLH--RVTFHKVKGHSDNPYNSRADELARL 140 (146)
T ss_dssp SHHHHHHHTTCC----CCCTTHHHHHHHHHHHHHS--EEEEEECCC-CCSHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCccCCCCCcCCHHHHHHHHHHHhhC--ceEEEEcCCcCCcHhHHHHHHHHHH
Confidence 0 0 01 1123456777777666654 47778999 6799999999863
No 29
>1jl1_A Ribonuclease HI; RNAse HI, protein stability, thermostability, hydrogen exchange, cooperativity, hydrolase; 1.30A {Escherichia coli} SCOP: c.55.3.1 PDB: 1f21_A 1jxb_A 1g15_A 1rch_A 1rdd_A 1rnh_A* 2rn2_A 1rda_A 1law_A 1rdb_A 1lav_A 3aa4_A 1rbu_A 1gob_A 1rdc_A 1kvc_A 3aa3_A 3aa2_A 3aa5_X 1rbv_A ...
Probab=98.16 E-value=4.1e-06 Score=82.28 Aligned_cols=116 Identities=21% Similarity=0.228 Sum_probs=77.3
Q ss_pred ceEEEEcCCcc------cceeeecccccccccChhhhccccchHhHHHHHHHHHhCCCccCCCeEEEEecChhHHHHHHh
Q psy15121 62 RTFMSTDASDV------GWGAMVGNVSVQGVWTQAQRSWHINLKELFTVRAAISSNPSLVANHTVVLQSDNKTVIAYIRK 135 (960)
Q Consensus 62 ~~~v~tDAS~~------G~ga~l~~~~~~~~~~~~e~~~~i~~~Ellav~~Al~~~~~~~~~~~v~~~~Dn~~av~~~~~ 135 (960)
...+|||+|.. |+|+++.........+......+.|.-||.|++.||+.... .+++.|+||++.++.-+++
T Consensus 4 ~~~iytDGs~~~n~~~~G~G~v~~~~~~~~~~~~~~~~~tn~~aEl~A~~~aL~~~~~---~~~v~I~tDS~~vi~~i~~ 80 (155)
T 1jl1_A 4 QVEIFTAGSALGNPGPGGYGAILRYRGREKTFSAGYTRTTNNRMELMAAIVALEALKE---HAEVILSTDSQYVRQGITQ 80 (155)
T ss_dssp CEEEEEEEEESSTTEEEEEEEEEEETTEEEEEEEEEEEECHHHHHHHHHHHHHHTCCS---CCEEEEEECCHHHHHHHHT
T ss_pred eEEEEEccccCCCCCceEEEEEEEECCeEEEEecCCCCCcHHHHHHHHHHHHHHHhCc---CCcEEEEeCHHHHHHHHHH
Confidence 45799999964 68888863211111222222345678899999999988654 3789999999999988875
Q ss_pred -------hC---CCCCh-hhHHHHHHHHHHHHhcCceEEEEeeCCC----chhhhhhhccCC
Q psy15121 136 -------QG---GLRSH-ALLAETKKLLLIMSKLNIHIVPYFIPGK----CNSLADALSRQA 182 (960)
Q Consensus 136 -------~~---~~~~~-~~~~l~~~l~~~~~~~~~~~~~~hipg~----~N~~ADalSR~~ 182 (960)
.+ +...+ ....+...+..++. .+.++..||||. .|..||.|.|.-
T Consensus 81 w~~~W~~n~~~~~~g~~v~n~~l~~~i~~l~~--~~~v~~~wV~gH~g~~~Ne~AD~LA~~a 140 (155)
T 1jl1_A 81 WIHNWKKRGWKTADKKPVKNVDLWQRLDAALG--QHQIKWEWVKGHAGHPENERADELARAA 140 (155)
T ss_dssp THHHHHHTTTBCTTSCBCTTHHHHHHHHHHTT--TCEEEEEECCSSTTCHHHHHHHHHHHHH
T ss_pred HHHHHhhcccccccCCccCCHHHHHHHHHHHc--cCceEEEEcCCCCCCHHHHHHHHHHHHH
Confidence 01 11111 12455555554443 356888999965 899999998754
No 30
>3qio_A GAG-POL polyprotein; RNAse H, inhibitor, nuclease, transferase, hydrolase- complex; HET: QID; 1.40A {Hiv-1 M} SCOP: c.55.3.1 PDB: 3qin_A* 3hyf_A* 1o1w_A 3lp3_A* 1hrh_A 3k2p_A* 1rdh_A
Probab=98.13 E-value=8.3e-06 Score=79.56 Aligned_cols=115 Identities=12% Similarity=0.064 Sum_probs=76.2
Q ss_pred CCCceEEEEcCCc------ccceeeecccccccccChhhhccccchHhHHHHHHHHHhCCCccCCCeEEEEecChhHHHH
Q psy15121 59 PVPRTFMSTDASD------VGWGAMVGNVSVQGVWTQAQRSWHINLKELFTVRAAISSNPSLVANHTVVLQSDNKTVIAY 132 (960)
Q Consensus 59 ~~~~~~v~tDAS~------~G~ga~l~~~~~~~~~~~~e~~~~i~~~Ellav~~Al~~~~~~~~~~~v~~~~Dn~~av~~ 132 (960)
+.....+|||+|. -|+|+++..... ... .......|.-||+|++.||+.- +++|.|+||++-++.-
T Consensus 9 ~~~~~~iytDGs~~~n~g~~g~G~v~~~~~~-~~~--~~~~~Tnn~aEl~A~i~AL~~~-----~~~v~i~tDS~~v~~~ 80 (150)
T 3qio_A 9 IVGAETFYVDGAANRETKLGKAGYVTNRGRQ-KVV--TLTDTTNQKTELQAIYLALQDS-----GLEVNIVTDSQYALGI 80 (150)
T ss_dssp CTTCEEEEEEEEECTTTCCEEEEEEETTSCE-EEE--EESSCCHHHHHHHHHHHHHHHS-----CSEEEEEESCHHHHHH
T ss_pred CCCCEEEEEccCCCCCCCCeEEEEEEEcCCE-EEE--eCCCCCHHHHHHHHHHHHHHhC-----CCcEEEEeCcHHHHHH
Confidence 3344599999995 478888763211 011 1233456778999999999973 5899999999998887
Q ss_pred HHhhC----------CCC-ChhhHHHHHHHHHHHHhcCceEEEEeeCCCc----hhhhhhhccCC
Q psy15121 133 IRKQG----------GLR-SHALLAETKKLLLIMSKLNIHIVPYFIPGKC----NSLADALSRQA 182 (960)
Q Consensus 133 ~~~~~----------~~~-~~~~~~l~~~l~~~~~~~~~~~~~~hipg~~----N~~ADalSR~~ 182 (960)
+++-. +.. .-...++..++..... ....++..||||.. |..||.|.|.-
T Consensus 81 i~~w~~~W~~~gw~~~~g~~v~n~~l~~~l~~~l~-~~~~v~~~wV~gH~g~~~Ne~AD~LA~~a 144 (150)
T 3qio_A 81 ITQWIHNWKKRGWKTADKKPVKNVDLVNQIIEQLI-KKEKVYLAWVPAHKGIGGNEQVDKLVSAG 144 (150)
T ss_dssp HHHHHHHHCC------------CHHHHHHHHHHHT-TCSEEEEEECCTTSCCHHHHHHHHHHHTT
T ss_pred HHHHHHHHhhcCcCcCcCcccccHHHHHHHHHHHh-hcCceEEEEccCcCCChhHHHHHHHHHHH
Confidence 76520 111 1123445555443222 34568999999998 99999999864
No 31
>2qkb_A Ribonuclease H1, HS-RNAse HC, RNAse H1; RNA/DNA hybrid; 2.40A {Homo sapiens} PDB: 2qk9_A 2qkk_A*
Probab=98.12 E-value=4.6e-06 Score=81.88 Aligned_cols=117 Identities=18% Similarity=0.091 Sum_probs=76.9
Q ss_pred CceEEEEcCCc---------ccceeeecccccccccChh-hhccccchHhHHHHHHHHHhCCCccCCCeEEEEecChhHH
Q psy15121 61 PRTFMSTDASD---------VGWGAMVGNVSVQGVWTQA-QRSWHINLKELFTVRAAISSNPSLVANHTVVLQSDNKTVI 130 (960)
Q Consensus 61 ~~~~v~tDAS~---------~G~ga~l~~~~~~~~~~~~-e~~~~i~~~Ellav~~Al~~~~~~~~~~~v~~~~Dn~~av 130 (960)
-...||||+|. .|+|+++..... ..++.. ....+.|.-||+|++.||+.-.. ...++|.|+||++.++
T Consensus 6 ~~~~iytDGs~~~n~~~~~~aG~Gvv~~~~~~-~~~~~~l~~~~tn~~aEl~A~~~aL~~~~~-~~~~~v~i~tDS~~vi 83 (154)
T 2qkb_A 6 DFVVVYTDGCCSSNGRRRPRAGIGVYWGPGHP-LNVGIRLPGRQTNQRAEIHAACKAIEQAKT-QNINKLVLYTNSMFTI 83 (154)
T ss_dssp TEEEEEEEEEEETTTSSSCEEEEEEECSTTCT-TCEEEECCSSCCHHHHHHHHHHHHHHHHHH-TTCCEEEEEESCHHHH
T ss_pred CeEEEEEccCcCCCCCCCCcEEEEEEEECCCc-eeEEeecCCCCchHHHHHHHHHHHHHHHHh-CCCceEEEEECcHHHH
Confidence 34589999994 378888763211 111111 11245677899999999976532 2347899999999888
Q ss_pred HHHHhh----------CCCC-ChhhHHHHHHHHHHHHhcCceEEEEeeCCC----chhhhhhhccC
Q psy15121 131 AYIRKQ----------GGLR-SHALLAETKKLLLIMSKLNIHIVPYFIPGK----CNSLADALSRQ 181 (960)
Q Consensus 131 ~~~~~~----------~~~~-~~~~~~l~~~l~~~~~~~~~~~~~~hipg~----~N~~ADalSR~ 181 (960)
.-+++. .+.. ......+...+..++. ++.++..||||. .|..||.|.|.
T Consensus 84 ~~i~~~~~~w~~~~w~~~~~~~~~n~~l~~~i~~l~~--~~~v~~~~V~~H~g~~~N~~AD~LA~~ 147 (154)
T 2qkb_A 84 NGITNWVQGWKKNGWKTSAGKEVINKEDFVALERLTQ--GMDIQWMHVPGHSGFIGNEEADRLARE 147 (154)
T ss_dssp HHHHTHHHHHHTTTSBCTTSSBCTTHHHHHHHHHHHT--TCEEEEEECCTTSSCHHHHHHHHHHHH
T ss_pred hhhhhhHHHHHhccccccCCCccccHHHHHHHHHHHc--CCceEEEEccCCCCCHhHHHHHHHHHH
Confidence 777641 1111 1224566666665555 456889999995 59999999874
No 32
>3p1g_A Xenotropic murine leukemia virus-related virus (X H domain; XMRV, RNAse H, reverse transcriptase, transcription; 1.50A {Xenotropic mulv-related virus} PDB: 3v1q_A 3v1o_A 3v1r_A* 2hb5_A 4e89_A
Probab=98.12 E-value=7.2e-06 Score=81.22 Aligned_cols=117 Identities=19% Similarity=0.124 Sum_probs=75.4
Q ss_pred CCCceEEEEcCCcc------cceeeecccccccccChhhhccccchHhHHHHHHHHHhCCCccCCCeEEEEecChhHHHH
Q psy15121 59 PVPRTFMSTDASDV------GWGAMVGNVSVQGVWTQAQRSWHINLKELFTVRAAISSNPSLVANHTVVLQSDNKTVIAY 132 (960)
Q Consensus 59 ~~~~~~v~tDAS~~------G~ga~l~~~~~~~~~~~~e~~~~i~~~Ellav~~Al~~~~~~~~~~~v~~~~Dn~~av~~ 132 (960)
+.....+|||+|.. |+|+++.........+.-+.....|.-||+|++.||+.. .++++.|+||++-++.-
T Consensus 20 ~~~~i~iytDGs~~~npG~~g~G~vi~~~~~~~~~~~~~~~~Tnn~aEl~Ai~~AL~~~----~~~~v~I~tDS~~vi~~ 95 (165)
T 3p1g_A 20 PDADYTWYTDGSSFLQEGQRRAGAAVTTETEVIWARALPAGTSAQRAELIALTQALKMA----EGKKLNVYTDSRYAFAT 95 (165)
T ss_dssp TTCSEEEEEEEEEEEETTEEEEEEEEECSSCEEEEEEECTTCCHHHHHHHHHHHHHHHT----BTSEEEEEECCHHHHHH
T ss_pred CCCCEEEEEEcccCCCCCceEEEEEEEECCEEEEEecCCCCCcHHHHHHHHHHHHHHHc----cCceEEEEEchHHHHhh
Confidence 34456999999964 588877532111111111223466889999999999976 47899999999977765
Q ss_pred HHhhCCCCCh-hhHHHHHHHHHHHHhcCceEEEEeeCCCc---------hhhhhhhccC
Q psy15121 133 IRKQGGLRSH-ALLAETKKLLLIMSKLNIHIVPYFIPGKC---------NSLADALSRQ 181 (960)
Q Consensus 133 ~~~~~~~~~~-~~~~l~~~l~~~~~~~~~~~~~~hipg~~---------N~~ADalSR~ 181 (960)
+-.. +...+ ...++..++.... .....++..||||.. |..||.|.|.
T Consensus 96 iw~~-~~g~~v~n~dl~~~l~~~l-~~~~~v~~~wVkgH~g~~~~~~~gNe~AD~LA~~ 152 (165)
T 3p1g_A 96 AHVH-SEGREIKNKNEILALLKAL-FLPKRLSIIHCPGHQKGNSAEARGNRMADQAARE 152 (165)
T ss_dssp HHSC-CCSCCCSSHHHHHHHHHHT-TSBSEEEEEECCSSCCSCSHHHHHHHHHHHHHHH
T ss_pred hhcc-cCCCcccCHHHHHHHHHHH-hcCCceEEEEecCCCCCCcCcchHHHHHHHHHHH
Confidence 5211 11111 2344444443221 235569999999987 9999999874
No 33
>2lsn_A Reverse transcriptase; RNAse H, viral protein; NMR {Simian foamy virus}
Probab=97.86 E-value=2e-05 Score=77.99 Aligned_cols=122 Identities=19% Similarity=0.063 Sum_probs=71.6
Q ss_pred CCCceEEEEcCCc-----------ccceeeecccccccccChhhhccccchHhHHHHHHHHHhCC--CccCCCeEEEEec
Q psy15121 59 PVPRTFMSTDASD-----------VGWGAMVGNVSVQGVWTQAQRSWHINLKELFTVRAAISSNP--SLVANHTVVLQSD 125 (960)
Q Consensus 59 ~~~~~~v~tDAS~-----------~G~ga~l~~~~~~~~~~~~e~~~~i~~~Ellav~~Al~~~~--~~~~~~~v~~~~D 125 (960)
.....+||||+|. -|||+++.........+..+....=|--|++|.+.||..-- ..-.+++|.|+||
T Consensus 4 ~~~evviYTDGsc~gNpgp~~~~~aG~Gv~~~~~~~~~~~~~~~~~~tnn~te~~Aei~Al~~al~~al~~~~~v~I~TD 83 (165)
T 2lsn_A 4 GQYEGVFYTDGSAIKSPDPTKSNNAGMGIVHATYKPEYQVLNQWSIPLGNHTAQMAEIAAVEFACKKALKIPGPVLVITD 83 (165)
T ss_dssp CCCSEEEEEEEEEEECSSCTTCEEEEEEEEEECCSSSCCEEEEEEEEESSCCHHHHHHHHHHHHHHHHHHSSSCEEEEES
T ss_pred CCceEEEEEcCCCCCCCCCCCCCcEEEEEEEEECCCccEEeccccCCchHHHHHHHHHHHHHHHHHHHhcCCCeEEEEeC
Confidence 3456689999994 47999986333222222222222223446666666653210 1124578999999
Q ss_pred ChhHHHHHHh----------hCCCCCh-hhHHHHHHHHHHHHhcCceEEEEeeCCCc----------hhhhhhhccC
Q psy15121 126 NKTVIAYIRK----------QGGLRSH-ALLAETKKLLLIMSKLNIHIVPYFIPGKC----------NSLADALSRQ 181 (960)
Q Consensus 126 n~~av~~~~~----------~~~~~~~-~~~~l~~~l~~~~~~~~~~~~~~hipg~~----------N~~ADalSR~ 181 (960)
++=++.-+++ +.+...| ...+|..+|......+ ..++..|++|-. |..||.|.|.
T Consensus 84 S~Yvi~~it~w~~~Wk~ngw~~~~~~pVkN~dL~~~l~~~~~~~-~~v~~~~VkgH~g~~~~~~~~gNe~AD~LA~~ 159 (165)
T 2lsn_A 84 SFYVAESANKELPYWKSNGFVNNKKKPLKHISKWKSIAECLSMK-PDITIQHEKGHQPTNTSIHTEGNALADKLATQ 159 (165)
T ss_dssp CHHHHHHHHTHHHHHHHTTSCSCSSSCCSSHHHHHHHHHHHHHC-TTCEEEECCSSSCSSSCHHHHHHHHHHHHHHH
T ss_pred hHHHHhhhhhhhhhheeccccccCCCcccCHHHHHHHHHHHhCC-CCEEEEEEeCCCCccCCCCChHHHHHHHHHHH
Confidence 9987765542 1122222 2356666666554443 246779999864 9999999863
No 34
>1zbf_A Ribonuclease H-related protein; RNAse H, RNA/DNA hybrid, DDE motif, hydrolase; 1.50A {Bacillus halodurans} SCOP: c.55.3.1 PDB: 1zbi_A 2g8u_A 2g8i_A 2g8h_A 2g8k_A 2g8f_A 2g8v_A 2g8w_A 3ey1_A* 1zbl_A 3d0p_A* 3i8d_A* 2r7y_A*
Probab=97.71 E-value=3.5e-05 Score=74.13 Aligned_cols=109 Identities=9% Similarity=0.040 Sum_probs=74.3
Q ss_pred CceEEEeCCCc------cceeeeEeee----eeccccccccccCChhHHHHHHHHHHHHhCccccCCCeEEEEcCCHHHH
Q psy15121 807 PRTFMSTDASD------VGWGAMVGNV----SVQGVWTQAQRSWHINLKELFTVRAAISSNPSLVANHTVVLQSDNKTVI 876 (960)
Q Consensus 807 ~~~~l~tDAS~------~g~GavL~q~----~~S~~l~~~e~~ysi~~kEllAiv~Al~~~~~~L~g~~~~I~TDh~~l~ 876 (960)
.-+.||||+|. .|+|+++... ..++ .....+.++.|+.|++.||+.....-. +++|+|||+.++
T Consensus 10 ~~~~iy~DGa~~gNpG~~G~G~vl~~~g~~~~~~~----~~~~~TNN~aEl~A~i~aL~~~~~~~~--~v~i~tDS~~vi 83 (142)
T 1zbf_A 10 IWESLSVDVGSQGNPGIVEYKGVDTKTGEVLFERE----PIPIGTNNMGEFLAIVHGLRYLKERNS--RKPIYSNSQTAI 83 (142)
T ss_dssp CSSSEEEEEEECSSSEEEEEEEEETTTCCEEEECC----CEEEECHHHHHHHHHHHHHHHHHHTTC--CCCEEESCHHHH
T ss_pred CeEEEEEeeccCCCCCCeEEEEEEEeCCEEEEEec----ccCCcCcHHHHHHHHHHHHHHHHhCCC--eEEEEEehHHHH
Confidence 34689999964 4789998621 2222 223468999999999999997654322 899999999999
Q ss_pred HHHHhcCC-------CCChhHHHHHHHHHHHHhccCcEEEEEeeCCC----CCCcccc
Q psy15121 877 AYIRKQGG-------LRSHALLAETKKLLLIMSKLNIHIVPYFIPGK----CNSLADA 923 (960)
Q Consensus 877 ~~l~~~~~-------~~~~~l~~~~~r~~~~l~~~~~~i~~~~vpG~----~N~~AD~ 923 (960)
.++++... .++..+-..+.+...++..+.++.. .++.. .|.+||+
T Consensus 84 ~w~~~~~~k~~~~~~v~n~dLw~~l~~~~~w~~~~~~~~~--~~kw~~~~~ge~pad~ 139 (142)
T 1zbf_A 84 KWVKDKKAKSTLVRNEETALIWKLVDEAEEWLNTHTYETP--ILKWQTDKWGEIKADY 139 (142)
T ss_dssp HHHHHTCCCCCCCCSTTTHHHHHHHHHHHHHHHHCCCCCC--EEECCHHHHCSCTTCC
T ss_pred HHHHcCCccCCCCCCcccHHHHHHHHHHHHHHhhCCCcee--EEEeccCccCcCcccc
Confidence 99997531 1344555566666677777776553 44433 4568886
No 35
>2kq2_A Ribonuclease H-related protein; PSI, NESG, protein structure, APO enzyme, structural genomics, protein structure initiative; NMR {Desulfitobacterium hafniense dcb-2} PDB: 2kw4_A
Probab=97.68 E-value=4.8e-06 Score=81.04 Aligned_cols=117 Identities=11% Similarity=0.024 Sum_probs=72.4
Q ss_pred CCceEEEEcCCc----ccceeeecccc----ccc-ccChhhh-ccccchHhHHHHHHHHHhCCCccCCCeEEEEecChhH
Q psy15121 60 VPRTFMSTDASD----VGWGAMVGNVS----VQG-VWTQAQR-SWHINLKELFTVRAAISSNPSLVANHTVVLQSDNKTV 129 (960)
Q Consensus 60 ~~~~~v~tDAS~----~G~ga~l~~~~----~~~-~~~~~e~-~~~i~~~Ellav~~Al~~~~~~~~~~~v~~~~Dn~~a 129 (960)
.-...+|||+|. .|+|+++.... ..+ .....+. ....|.-||+|++.||+.-.. .|.+|.|+||++.+
T Consensus 4 ~~~i~iytDGs~~~g~~G~G~vi~~~g~~~~~~~~~~~~~~~~~~tNn~aEl~A~~~AL~~a~~--~~~~v~I~tDS~~i 81 (147)
T 2kq2_A 4 RTEYDVYTDGSYVNGQYAWAYAFVKDGKVHYEDADVGKNPAAATMRNVAGEIAAALYAVKKASQ--LGVKIRILHDYAGI 81 (147)
T ss_dssp TSCCEEECCCCCBTTBCEEEEEEEETTEEEEEEEEECCCGGGGGTCTTHHHHHHHHHHHHHHHH--HTCCCCBSSCCSTH
T ss_pred CCeEEEEECCCCCCCCcEEEEEEEECCEEEEEEeccccccccccccHHHHHHHHHHHHHHHHHH--CCCeEEEEECcHHH
Confidence 345589999996 68999985311 111 1111221 335778999999999975211 24479999999988
Q ss_pred HHHHHhhCCCCChhhHHHHHHHHHHHHhcCceEEEEeeCCC----chhhhhhhccCC
Q psy15121 130 IAYIRKQGGLRSHALLAETKKLLLIMSKLNIHIVPYFIPGK----CNSLADALSRQA 182 (960)
Q Consensus 130 v~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~hipg~----~N~~ADalSR~~ 182 (960)
..|+++- -..+.........++. +... .++..||||- .|..||.|.|.-
T Consensus 82 ~~w~~~~-w~~~~~~~~~~~~l~~--~l~~-~v~~~wV~gH~g~~~Ne~AD~LA~~a 134 (147)
T 2kq2_A 82 AFWATGE-WKAKNEFTQAYAKLMN--QYRG-IYSFEKVKAHSGNEFNDYVDMKAKSA 134 (147)
T ss_dssp HHHTTSS-SSCCHHHHHHHHCGGG--GGST-TCCBCCCCCCCCCHHHHHHHHHHHHH
T ss_pred HHHHhCC-CccCCcchHHHHHHHH--HhcC-CeeEEEecCcCCCcchHHHHHHHHHH
Confidence 8888642 1222222222233322 1112 5777999984 699999998753
No 36
>4htu_A Ribonuclease H, RNAse H; 5-chloro-2'-deoxyuridine, W-C base PAIR, wobble base PAIR, D helix; HET: DNA UCL; 1.49A {Bacillus halodurans} PDB: 3d0p_A* 4hue_A* 4huf_A* 4hug_A* 1zbf_A 1zbi_A 2g8u_A 3uld_A* 3ey1_A* 3twh_A* 2g8f_A 2g8v_A 2g8w_A 2g8i_A 2g8h_A 2g8k_A 3i8d_A* 2r7y_A* 1zbl_A
Probab=97.43 E-value=0.00017 Score=68.12 Aligned_cols=97 Identities=9% Similarity=0.066 Sum_probs=66.1
Q ss_pred eEEEeCCCc------cceeeeEeeeeeccccccccccCChhHHHHHHHHHHHHhCccccCCCeEEEEcCCHHHHHHHHhc
Q psy15121 809 TFMSTDASD------VGWGAMVGNVSVQGVWTQAQRSWHINLKELFTVRAAISSNPSLVANHTVVLQSDNKTVIAYIRKQ 882 (960)
Q Consensus 809 ~~l~tDAS~------~g~GavL~q~~~S~~l~~~e~~ysi~~kEllAiv~Al~~~~~~L~g~~~~I~TDh~~l~~~l~~~ 882 (960)
..||||+|. .|+|+|+...-...........-+.++.|++|++.||+.... .+.+++|+|||+.++.++++.
T Consensus 6 ~~iytDGac~GNPGp~G~ggV~~~~g~~~~~~g~~~~tTNN~aEl~A~i~aL~~l~~--~~~~v~i~tDSqyVi~wi~~~ 83 (134)
T 4htu_A 6 ESLSVDVGSQGNPGIVEYKGVDTKTGEVLFEREPIPIGTNNMGEFLAIVHGLRYLKE--RNSRKPIYSNSQTAIKWVKDK 83 (134)
T ss_dssp SSEEEEEEEETTTEEEEEEEEETTTCCEEEEEEEEEEECHHHHHHHHHHHHHHHHHH--TTCCCCEEESCHHHHHHHHHT
T ss_pred eEEEEeeccCCCCCCeEEEEEEEECCEEEEEecCCCCCchHHHHHHHHHHHHHHHHh--CCCCEEEEcchHHHHHHHHcC
Confidence 368999964 578788754200011122234568999999999999998654 244589999999999999974
Q ss_pred C-------CCCChhHHHHHHHHHHHHhccCcE
Q psy15121 883 G-------GLRSHALLAETKKLLLIMSKLNIH 907 (960)
Q Consensus 883 ~-------~~~~~~l~~~~~r~~~~l~~~~~~ 907 (960)
+ ..++..+-.++.+...++..+.+.
T Consensus 84 ~~kt~~~~~vkN~dLw~~ld~~~~~l~~~~~~ 115 (134)
T 4htu_A 84 KAKSTLVRNEETALIWKLVDEAEEWLNTHTYE 115 (134)
T ss_dssp CCCCCCCCSSTTHHHHHHHHHHHHHHHHCCCC
T ss_pred CcccCCCCCccCHHHHHHHHHHHHHHHhCCCC
Confidence 1 224556656666777778877654
No 37
>1zbf_A Ribonuclease H-related protein; RNAse H, RNA/DNA hybrid, DDE motif, hydrolase; 1.50A {Bacillus halodurans} SCOP: c.55.3.1 PDB: 1zbi_A 2g8u_A 2g8i_A 2g8h_A 2g8k_A 2g8f_A 2g8v_A 2g8w_A 3ey1_A* 1zbl_A 3d0p_A* 3i8d_A* 2r7y_A*
Probab=97.23 E-value=0.00023 Score=68.44 Aligned_cols=98 Identities=8% Similarity=0.044 Sum_probs=64.6
Q ss_pred eEEEEcCCcc------cceeeecccccccccChhhhccccchHhHHHHHHHHHhCCCccCCCeEEEEecChhHHHHHHhh
Q psy15121 63 TFMSTDASDV------GWGAMVGNVSVQGVWTQAQRSWHINLKELFTVRAAISSNPSLVANHTVVLQSDNKTVIAYIRKQ 136 (960)
Q Consensus 63 ~~v~tDAS~~------G~ga~l~~~~~~~~~~~~e~~~~i~~~Ellav~~Al~~~~~~~~~~~v~~~~Dn~~av~~~~~~ 136 (960)
..+|||+|.. |+|+++.........+.......-|.-|++|++.||+.-... +.++.|+||++-++.|+++.
T Consensus 12 ~~iy~DGa~~gNpG~~G~G~vl~~~g~~~~~~~~~~~~TNN~aEl~A~i~aL~~~~~~--~~~v~i~tDS~~vi~w~~~~ 89 (142)
T 1zbf_A 12 ESLSVDVGSQGNPGIVEYKGVDTKTGEVLFEREPIPIGTNNMGEFLAIVHGLRYLKER--NSRKPIYSNSQTAIKWVKDK 89 (142)
T ss_dssp SSEEEEEEECSSSEEEEEEEEETTTCCEEEECCCEEEECHHHHHHHHHHHHHHHHHHT--TCCCCEEESCHHHHHHHHHT
T ss_pred EEEEEeeccCCCCCCeEEEEEEEeCCEEEEEecccCCcCcHHHHHHHHHHHHHHHHhC--CCeEEEEEehHHHHHHHHcC
Confidence 4899999864 699998621111111222224567889999999999765321 21799999999999999975
Q ss_pred CCC-------CChhhHHHHHHHHHHHHhcCceE
Q psy15121 137 GGL-------RSHALLAETKKLLLIMSKLNIHI 162 (960)
Q Consensus 137 ~~~-------~~~~~~~l~~~l~~~~~~~~~~~ 162 (960)
... ++..+-++..++..|...+.+..
T Consensus 90 ~~k~~~~~~v~n~dLw~~l~~~~~w~~~~~~~~ 122 (142)
T 1zbf_A 90 KAKSTLVRNEETALIWKLVDEAEEWLNTHTYET 122 (142)
T ss_dssp CCCCCCCCSTTTHHHHHHHHHHHHHHHHCCCCC
T ss_pred CccCCCCCCcccHHHHHHHHHHHHHHhhCCCce
Confidence 411 23345566666677777666543
No 38
>4htu_A Ribonuclease H, RNAse H; 5-chloro-2'-deoxyuridine, W-C base PAIR, wobble base PAIR, D helix; HET: DNA UCL; 1.49A {Bacillus halodurans} PDB: 3d0p_A* 4hue_A* 4huf_A* 4hug_A* 1zbf_A 1zbi_A 2g8u_A 3uld_A* 3ey1_A* 3twh_A* 2g8f_A 2g8v_A 2g8w_A 2g8i_A 2g8h_A 2g8k_A 3i8d_A* 2r7y_A* 1zbl_A
Probab=96.69 E-value=0.0016 Score=61.41 Aligned_cols=95 Identities=8% Similarity=0.052 Sum_probs=61.1
Q ss_pred EEEEcCCcc------cceeeecccccccccChhhhccccchHhHHHHHHHHHhCCCccCCCeEEEEecChhHHHHHHhhC
Q psy15121 64 FMSTDASDV------GWGAMVGNVSVQGVWTQAQRSWHINLKELFTVRAAISSNPSLVANHTVVLQSDNKTVIAYIRKQG 137 (960)
Q Consensus 64 ~v~tDAS~~------G~ga~l~~~~~~~~~~~~e~~~~i~~~Ellav~~Al~~~~~~~~~~~v~~~~Dn~~av~~~~~~~ 137 (960)
.||||+|.. |+|+|+.........+..+....-|.=|++|++.||+.-.. .+.++.|+||++-++.|+++.+
T Consensus 7 ~iytDGac~GNPGp~G~ggV~~~~g~~~~~~g~~~~tTNN~aEl~A~i~aL~~l~~--~~~~v~i~tDSqyVi~wi~~~~ 84 (134)
T 4htu_A 7 SLSVDVGSQGNPGIVEYKGVDTKTGEVLFEREPIPIGTNNMGEFLAIVHGLRYLKE--RNSRKPIYSNSQTAIKWVKDKK 84 (134)
T ss_dssp SEEEEEEEETTTEEEEEEEEETTTCCEEEEEEEEEEECHHHHHHHHHHHHHHHHHH--TTCCCCEEESCHHHHHHHHHTC
T ss_pred EEEEeeccCCCCCCeEEEEEEEECCEEEEEecCCCCCchHHHHHHHHHHHHHHHHh--CCCCEEEEcchHHHHHHHHcCC
Confidence 689999964 68788753111111111222446678899999999977532 2445899999999999999753
Q ss_pred CC-------CChhhHHHHHHHHHHHHhcCc
Q psy15121 138 GL-------RSHALLAETKKLLLIMSKLNI 160 (960)
Q Consensus 138 ~~-------~~~~~~~l~~~l~~~~~~~~~ 160 (960)
.. ++..|=++..++..|...+.+
T Consensus 85 ~kt~~~~~vkN~dLw~~ld~~~~~l~~~~~ 114 (134)
T 4htu_A 85 AKSTLVRNEETALIWKLVDEAEEWLNTHTY 114 (134)
T ss_dssp CCCCCCCSSTTHHHHHHHHHHHHHHHHCCC
T ss_pred cccCCCCCccCHHHHHHHHHHHHHHHhCCC
Confidence 22 234455555555566666554
No 39
>3kyl_A Telomerase reverse transcriptase; reverse transcriptase; 2.70A {Tribolium castaneum} PDB: 3du5_A 3du6_A
Probab=93.96 E-value=0.074 Score=60.14 Aligned_cols=128 Identities=20% Similarity=0.163 Sum_probs=84.4
Q ss_pred hhcCCCcEEEeeehhhccCcccc-------ccc-----ccccceee----------------eeecccccCCCCccccch
Q psy15121 638 LFLQKNDYLATIDLSQAYCHIPI-------ARR-----HRRFLCFL----------------IPMDMSSFRPSLSSPGVC 689 (960)
Q Consensus 638 ~~l~~~~~fs~lDl~~ay~qI~l-------~~~-----d~~~taF~----------------y~~~rlPFG~l~~ap~~f 689 (960)
....|..|...+|+++.|-.|.= +.. |.....+. -+-.-.|+| ..-||-+.
T Consensus 239 q~s~G~~yVVDaDIkkFFDnINHdkLLk~L~~~i~~IlDk~Il~LIkk~Lka~LV~igGk~y~qekGTPQG-GVISPLLA 317 (596)
T 3kyl_A 239 QKTQGQIYGIKVDIRDAYGNVKIPVLCKLIQSIPTHLLDSEKKNFIVDHISNQFVAFRRKIYKWNHGLLQG-DPLSGCLC 317 (596)
T ss_dssp HHCCSCCEEEEEEESSTTTTCCHHHHHHHHTTSCTTTSCHHHHHHHHHHHHCEEEESSSSEEEECSSSCBT-CTTHHHHH
T ss_pred hhcCCCeEEEeeEHHhhCCCCCHHHHHHHHHhhccccccHHHHHHHHHHHhhCeEEECCEEEecCCcccCC-cchhHHHH
Confidence 44567788888999888887763 111 11100000 244678999 88888765
Q ss_pred --hhHHHhhHh-hh--cCCeEEEEecceEEecCCHHHHHHHHHHHHHHHHHcCCeecccCcccc------ccceEEEEEE
Q psy15121 690 --PTIKLGRRL-RE--RGVRCLVYLDDFLLASQDPIVLKNQILQTLQLLTYLGWQVNLKKSQII------PSHRVDYLGI 758 (960)
Q Consensus 690 --~~~~i~~~l-~~--~~~~v~~YvDDili~s~s~eeh~~~l~~vl~~l~~~Gl~l~~~K~~~~------~~~~~~fLG~ 758 (960)
.+..+.+.+ .. .+..++.|.||+++.+.+.++....++. ++..+ .+|++|+... +...+.|+|+
T Consensus 318 NIYLheLDkel~~~l~kd~~LVRYADDFVIi~~Ske~Aerfl~~----Lkg~l-eLNpEKTrInF~~~~lp~~~fpwCGL 392 (596)
T 3kyl_A 318 ELYMAFMDRLYFSNLDKDAFIHRTVDDYFFCSPHPHKVYDFELL----IKGVY-QVNPTKTRTNLPTHRHPQDEIPYCGK 392 (596)
T ss_dssp HHHHHHHHHHHSTTSCTTSEEEECSSEEEEEESCHHHHHHHHHH----HHHHS-CEEEEEEEECCTTSSSCCSEEEETTE
T ss_pred HHHHHHHHHHHHHhhccCceEEEEcCcEEEEECCHHHHHHHHHH----hhCcc-eECchhceeecccccCCCceeeeeeE
Confidence 223343332 11 1457889999999999998876655553 44554 9999998642 2247999999
Q ss_pred EEcCCCcEEecCC
Q psy15121 759 SWDTDLLQVRLPV 771 (960)
Q Consensus 759 ~i~~~g~~~~~p~ 771 (960)
.++.....+....
T Consensus 393 LIDtkTLEI~kDy 405 (596)
T 3kyl_A 393 IFNLTTRQVRTLY 405 (596)
T ss_dssp EEETTTCCEEECC
T ss_pred EEECCEEEEEeCh
Confidence 9999988875433
No 40
>3kyl_A Telomerase reverse transcriptase; reverse transcriptase; 2.70A {Tribolium castaneum} PDB: 3du5_A 3du6_A
Probab=75.50 E-value=3.8 Score=46.60 Aligned_cols=116 Identities=15% Similarity=0.119 Sum_probs=77.0
Q ss_pred cchHhhhh----cCCcEEEEeecccccccccc-------Ccc-----cc--------ceEE-EEEcCe-eEE-EEEeCCC
Q psy15121 339 HQKIPLFL----QKNDYLATIDLSQAYCHIPI-------ARR-----HR--------RFLC-FLYKGT-VYQ-RTCLSFG 391 (960)
Q Consensus 339 i~~~l~~l----~~~~~~s~lDl~~~y~qi~l-------~~~-----d~--------~~ta-f~~~~~-~y~-~~~lPfG 391 (960)
+.+....+ .|..|...+||++-|=.|.= +.. |. ...+ ....+| .|. -...|+|
T Consensus 230 ihqa~~~L~q~s~G~~yVVDaDIkkFFDnINHdkLLk~L~~~i~~IlDk~Il~LIkk~Lka~LV~igGk~y~qekGTPQG 309 (596)
T 3kyl_A 230 LYTCWSEFTQKTQGQIYGIKVDIRDAYGNVKIPVLCKLIQSIPTHLLDSEKKNFIVDHISNQFVAFRRKIYKWNHGLLQG 309 (596)
T ss_dssp SSHHHHHHHHHCCSCCEEEEEEESSTTTTCCHHHHHHHHTTSCTTTSCHHHHHHHHHHHHCEEEESSSSEEEECSSSCBT
T ss_pred HHHHHHHHHhhcCCCeEEEeeEHHhhCCCCCHHHHHHHHHhhccccccHHHHHHHHHHHhhCeEEECCEEEecCCcccCC
Confidence 44444444 67889999999999977764 111 11 1111 122233 332 4567999
Q ss_pred CCCHHHHHHHHHHHHHHHHHH---cCCeeeEEecceEEEeCCHHHHHHHHHHhhccccccccccCCceecCCcccc
Q psy15121 392 LASAPQAFAQLSNWVAVLLRE---RGVRCLVYLDDFLLASQDSVVLKNQIFQTLPVNLSGNCSRSGRRSHPTHSLV 464 (960)
Q Consensus 392 l~~aP~~fq~~~~~il~~~~~---~~~~~~~YlDDili~s~s~~e~~~~l~~~~~~~~~~~l~~~g~~~~~~K~~~ 464 (960)
-.-||-+..=+++.+.+.+.. .+..++-|.||++|++++.+++.+-+..+ -+ .+ .+|++|+..
T Consensus 310 GVISPLLANIYLheLDkel~~~l~kd~~LVRYADDFVIi~~Ske~Aerfl~~L-----kg----~l-eLNpEKTrI 375 (596)
T 3kyl_A 310 DPLSGCLCELYMAFMDRLYFSNLDKDAFIHRTVDDYFFCSPHPHKVYDFELLI-----KG----VY-QVNPTKTRT 375 (596)
T ss_dssp CTTHHHHHHHHHHHHHHHHSTTSCTTSEEEECSSEEEEEESCHHHHHHHHHHH-----HH----HS-CEEEEEEEE
T ss_pred cchhHHHHHHHHHHHHHHHHHhhccCceEEEEcCcEEEEECCHHHHHHHHHHh-----hC----cc-eECchhcee
Confidence 999999998888877665521 24457889999999999988876665533 11 12 899999765
No 41
>2pqr_C WD repeat protein YKR036C; TPR domain, protein-protein complex, apoptosis; 1.88A {Saccharomyces cerevisiae}
Probab=22.29 E-value=13 Score=29.44 Aligned_cols=11 Identities=36% Similarity=0.368 Sum_probs=7.9
Q ss_pred eeeeeechhhh
Q psy15121 4 RCLVYLDDFLL 14 (960)
Q Consensus 4 ~~~~~~~~~~~ 14 (960)
|.|.||||+|-
T Consensus 26 RaLsyLDdlL~ 36 (64)
T 2pqr_C 26 RILAHLDEQRY 36 (64)
T ss_dssp HHHTCCCTTTS
T ss_pred HHHHHHHHHHH
Confidence 67888877653
Done!