Your job contains 1 sequence.
>psy15121
RGVRCLVYLDDFLLASQDPIVLKNQILQTLQLLTYLAQALIELKWFYHNLTGFTPLHPPV
PRTFMSTDASDVGWGAMVGNVSVQGVWTQAQRSWHINLKELFTVRAAISSNPSLVANHTV
VLQSDNKTVIAYIRKQGGLRSHALLAETKKLLLIMSKLNIHIVPYFIPGKCNSLADALSR
QALIPDWHLLPSLTESVFQRWGIESCAALCDPESPGQQGGIHRCLLKKVGFQASVGLPAP
ASTSSSIASLERRPGLICNSSSSVAEGLLVSRLEGAGNSPPNNGSRPQIASDRSSNGLLS
GNDRGHDIGNLANTGLSIMFNLKSLNSYVTTKKFKLINHQKIPLFLQKNDYLATIDLSQA
YCHIPIARRHRRFLCFLYKGTVYQRTCLSFGLASAPQAFAQLSNWVAVLLRERGVRCLVY
LDDFLLASQDSVVLKNQIFQTLPVNLSGNCSRSGRRSHPTHSLVANHTVVLQSDNKTVIT
YIRKQVGLRSNALLAETKKLLLIMSKLNIHIVPYFIPGKCNSLADALSRQALIPDWHLLP
SLTESVFPRWGSRVVPLYVTRNPQDSKAAFIDAFSRKWDFKLAWVFPPPPLLQVLHHLND
AQGLYGDGTMRPVFNLKSLNSYVTTKKFKLINHQKIPLFLQKNDYLATIDLSQAYCHIPI
ARRHRRFLCFLIPMDMSSFRPSLSSPGVCPTIKLGRRLRERGVRCLVYLDDFLLASQDPI
VLKNQILQTLQLLTYLGWQVNLKKSQIIPSHRVDYLGISWDTDLLQVRLPVDKIPPLRDR
LQTQALIELKWFYHNLTGFTPLHPPVPRTFMSTDASDVGWGAMVGNVSVQGVWTQAQRSW
HINLKELFTVRAAISSNPSLVANHTVVLQSDNKTVIAYIRKQGGLRSHALLAETKKLLLI
MSKLNIHIVPYFIPGKCNSLADALSRQALIPDWHLLPSLTESVFQRWGTISSCTEHQGTG
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= psy15121
(960 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
DICTYBASE|DDB_G0291223 - symbol:DDB_G0291223_RTE "DIRS1 O... 187 1.0e-11 1
DICTYBASE|DDB_G0267304 - symbol:DDB_G0267304_RTE "DIRS1 O... 139 5.2e-11 2
DICTYBASE|DDB_G0294180 - symbol:DDB_G0294180_RTE "DIRS1 O... 182 2.4e-10 1
DICTYBASE|DDB_G0267210 - symbol:DDB_G0267210_RTE "DIRS1 O... 185 2.6e-10 1
DICTYBASE|DDB_G0267338 - symbol:DDB_G0267338_RTE "DIRS1 O... 153 9.5e-10 1
DICTYBASE|DDB_G0294346 - symbol:DDB_G0294346_RTE "DIRS1 O... 186 1.0e-09 2
DICTYBASE|DDB_G0267240 - symbol:DDB_G0267240_RTE "DIRS1 O... 146 3.3e-06 1
DICTYBASE|DDB_G0267326 - symbol:DDB_G0267326_RTE "DIRS1 O... 142 8.9e-06 1
DICTYBASE|DDB_G0294338 - symbol:DDB_G0294338_RTE "DGLT-A"... 132 8.5e-05 1
DICTYBASE|DDB_G0267342 - symbol:DDB_G0267342_RTE "DIRS1 O... 143 0.00015 2
>DICTYBASE|DDB_G0291223 [details] [associations]
symbol:DDB_G0291223_RTE "DIRS1 ORF2/ORF3 fusion
fragment" species:44689 "Dictyostelium discoideum" [GO:0006278
"RNA-dependent DNA replication" evidence=IEA] [GO:0003964
"RNA-directed DNA polymerase activity" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] InterPro:IPR000477 Pfam:PF00078
PROSITE:PS50878 dictyBase:DDB_G0291223 GO:GO:0003723 GO:GO:0003964
GO:GO:0006278 eggNOG:COG2801 EMBL:AAFI02000176 RefSeq:XP_635338.1
ProteinModelPortal:Q54EZ5 EnsemblProtists:DDB0219661 GeneID:8628043
KEGG:ddi:DDB_G0291223 InParanoid:Q54EZ5 OMA:WINSPSA Uniprot:Q54EZ5
Length = 300
Score = 187 (70.9 bits), Expect = 1.0e-11, P = 1.0e-11
Identities = 35/108 (32%), Positives = 65/108 (60%)
Query: 319 MFNLKSLNSYVTTKKFKLINHQKIPLFLQKNDYLATIDLSQAYCHIPIARRHRRFLCFLY 378
+ +LK LNSY+ + FK+ + +P +++ Y+ +D+ +AY H+ + ++R F++
Sbjct: 127 VLDLKRLNSYINNQSFKMEGIKNLPSMVKQGYYMVKLDIKKAYLHVLVDPQYRDLFRFVW 186
Query: 379 KGTVYQRTCLSFGLASAPQAFAQLSNWVAVLLRERGVRCLVYLDDFLL 426
KG+ Y+ + FGL++AP+ F L V +LR+ V + YLDD L+
Sbjct: 187 KGSHYRWKTMPFGLSTAPRIFTMLLRPVLRMLRDINVSVIAYLDDLLI 234
Score = 178 (67.7 bits), Expect = 1.2e-10, P = 1.2e-10
Identities = 43/178 (24%), Positives = 90/178 (50%)
Query: 606 GDGTMRPVFNLKSLNSYVTTKKFKLINHQKIPLFLQKNDYLATIDLSQAYCHIPIARRHR 665
G RPV +LK LNSY+ + FK+ + +P +++ Y+ +D+ +AY H+ + ++R
Sbjct: 120 GTNLHRPVLDLKRLNSYINNQSFKMEGIKNLPSMVKQGYYMVKLDIKKAYLHVLVDPQYR 179
Query: 666 RFLCFL----------IPMDMSSFRPSLSSPGVCPTIKLGRRLRERGVRCLVYLDDFLLA 715
F+ +P +S+ P + + + P +++ LR+ V + YLDD L+
Sbjct: 180 DLFRFVWKGSHYRWKTMPFGLST-APRIFTMLLRPVLRM---LRDINVSVIAYLDDLLIV 235
Query: 716 SQDPIVLKNQIXXXXXXXXXXGWQVNLKKSQIIPSHRVDYLGISWDTDLLQVRLPVDK 773
+ + G+++NL+KS + P+ + +LG+ D+ +++ +P +K
Sbjct: 236 GSTKEECLSNLKKAMDLLVKLGFKLNLEKSVLEPTQSITFLGLQIDSVSMKLLVPKEK 293
>DICTYBASE|DDB_G0267304 [details] [associations]
symbol:DDB_G0267304_RTE "DIRS1 ORF3 fragment"
species:44689 "Dictyostelium discoideum" [GO:0015074 "DNA
integration" evidence=IEA] [GO:0006310 "DNA recombination"
evidence=IEA] [GO:0006278 "RNA-dependent DNA replication"
evidence=IEA] [GO:0004523 "ribonuclease H activity" evidence=IEA]
[GO:0003964 "RNA-directed DNA polymerase activity" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000477 InterPro:IPR002104 InterPro:IPR002156
InterPro:IPR011010 InterPro:IPR013762 Pfam:PF00075 Pfam:PF00078
Pfam:PF00589 PROSITE:PS50878 dictyBase:DDB_G0267304 GO:GO:0003677
GO:GO:0003723 GO:GO:0006310 GO:GO:0003964 GO:GO:0006278
GO:GO:0004523 GO:GO:0015074 Gene3D:1.10.443.10 SUPFAM:SSF56349
InterPro:IPR010998 SUPFAM:SSF47823 Gene3D:1.10.150.130
InterPro:IPR023109 EMBL:AAFI02000001 RefSeq:XP_647713.1
ProteinModelPortal:Q55H05 EnsemblProtists:DDB0216498 GeneID:8615835
KEGG:ddi:DDB_G0267304 OMA:PIRRESP Uniprot:Q55H05
Length = 833
Score = 139 (54.0 bits), Expect = 5.2e-11, Sum P(2) = 5.2e-11
Identities = 26/87 (29%), Positives = 52/87 (59%)
Query: 340 QKIPLFLQKNDYLATIDLSQAYCHIPIARRHRRFLCFLYKGTVYQRTCLSFGLASAPQAF 399
+ +P +++ Y+ +D+ +AY ++ + ++R F++KG+ Y+ + FGL++AP+ F
Sbjct: 5 KNLPSMVKQGYYMVKLDIKKAYLYVLVDPQYRDLFRFVWKGSHYRWKTMPFGLSTAPRIF 64
Query: 400 AQLSNWVAVLLRERGVRCLVYLDDFLL 426
L V +LR+ V + YLDD L+
Sbjct: 65 TMLLRPVLRMLRDINVSVIAYLDDLLI 91
Score = 104 (41.7 bits), Expect = 5.2e-11, Sum P(2) = 5.2e-11
Identities = 32/114 (28%), Positives = 59/114 (51%)
Query: 811 MSTDASDVGWGAMV--GNVSVQG---VWTQAQRSWHINLKELFTVRAAISSNPSLVANHT 865
++TDAS+ G GA + GN ++ W+ Q + N +E+ + A + + N
Sbjct: 247 LTTDASESGAGATLKKGNKVIKTWSFQWSTTQSNMSSNRREMLALLMAYQALCQKLNNCK 306
Query: 866 VVLQSDNKTVIAYIRKQGG-LRSHALLAETKKLLLIMSKLNIHIVPYFIPGKCN 918
+ +Q+DN T ++YI +QGG ++ ++L E + K+N+ + IPG N
Sbjct: 307 LKIQTDNTTTLSYINRQGGQIQDLSVLFEQLWKQCLKKKVNL--IGEHIPGFFN 358
Score = 96 (38.9 bits), Expect = 1.8e-06, Sum P(2) = 1.8e-06
Identities = 28/150 (18%), Positives = 72/150 (48%)
Query: 634 QKIPLFLQKNDYLATIDLSQAYCHIPIARRHRRFLCFL----------IPMDMSSFRPSL 683
+ +P +++ Y+ +D+ +AY ++ + ++R F+ +P +S+ P +
Sbjct: 5 KNLPSMVKQGYYMVKLDIKKAYLYVLVDPQYRDLFRFVWKGSHYRWKTMPFGLST-APRI 63
Query: 684 SSPGVCPTIKLGRRLRERGVRCLVYLDDFLLASQDPIVLKNQIXXXXXXXXXXGWQVNLK 743
+ + P +++ LR+ V + YLDD L+ + + G+++NL+
Sbjct: 64 FTMLLRPVLRM---LRDINVSVIAYLDDLLIVGSTKEECLSNLKKTMDLLVKLGFKLNLE 120
Query: 744 KSQIIPSHRVDYLGISWDTDLLQVRLPVDK 773
KS + + + +LG+ + +++ +P +K
Sbjct: 121 KSVLELTQSITFLGLQIGSISMKLLVPKEK 150
Score = 58 (25.5 bits), Expect = 2.8e-06, Sum P(2) = 2.8e-06
Identities = 17/57 (29%), Positives = 31/57 (54%)
Query: 466 NHTVVLQSDNKTVITYIRKQVG-LRSNALLAETKKLLLIMSKLNIHIVPYFIPGKCN 521
N + +Q+DN T ++YI +Q G ++ ++L E + K+N+ + IPG N
Sbjct: 304 NCKLKIQTDNTTTLSYINRQGGQIQDLSVLFEQLWKQCLKKKVNL--IGEHIPGFFN 358
>DICTYBASE|DDB_G0294180 [details] [associations]
symbol:DDB_G0294180_RTE "DIRS1 ORF1/ORF3 fusion
fragment" species:44689 "Dictyostelium discoideum" [GO:0006278
"RNA-dependent DNA replication" evidence=IEA] [GO:0003964
"RNA-directed DNA polymerase activity" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] InterPro:IPR000477 Pfam:PF00078
PROSITE:PS50878 dictyBase:DDB_G0294180 GO:GO:0003723 GO:GO:0003964
GO:GO:0006278 ProtClustDB:CLSZ2846537 EMBL:AAFI02000230
RefSeq:XP_628809.1 EnsemblProtists:DDB0215083 GeneID:3385473
KEGG:ddi:DDB_G0294180 InParanoid:Q54AV5 Uniprot:Q54AV5
Length = 558
Score = 182 (69.1 bits), Expect = 2.4e-10, P = 2.4e-10
Identities = 34/108 (31%), Positives = 65/108 (60%)
Query: 319 MFNLKSLNSYVTTKKFKLINHQKIPLFLQKNDYLATIDLSQAYCHIPIARRHRRFLCFLY 378
+ +LK LN+Y+ + FK+ + +P +++ Y+ +D+ +AY H+ + ++R F++
Sbjct: 418 VLDLKRLNTYINNQSFKMEGIKNLPSMVKQGYYMVKLDIKKAYLHVLVDPQYRDLFRFVW 477
Query: 379 KGTVYQRTCLSFGLASAPQAFAQLSNWVAVLLRERGVRCLVYLDDFLL 426
KG+ Y+ + FGL++AP+ F L V +LR+ V + YLDD L+
Sbjct: 478 KGSHYRWKTMPFGLSTAPRIFTMLLRPVLRMLRDIKVSVIAYLDDLLI 525
Score = 136 (52.9 bits), Expect = 0.00028, Sum P(2) = 0.00028
Identities = 36/150 (24%), Positives = 72/150 (48%)
Query: 606 GDGTMRPVFNLKSLNSYVTTKKFKLINHQKIPLFLQKNDYLATIDLSQAYCHIPIARRHR 665
G RPV +LK LN+Y+ + FK+ + +P +++ Y+ +D+ +AY H+ + ++R
Sbjct: 411 GTNLHRPVLDLKRLNTYINNQSFKMEGIKNLPSMVKQGYYMVKLDIKKAYLHVLVDPQYR 470
Query: 666 RFLCFL----------IPMDMSSFRPSLSSPGVCPTIKLGRRLRERGVRCLVYLDDFLLA 715
F+ +P +S+ P + + + P +++ LR+ V + YLDD L+
Sbjct: 471 DLFRFVWKGSHYRWKTMPFGLST-APRIFTMLLRPVLRM---LRDIKVSVIAYLDDLLIV 526
Query: 716 SQDPIVLKNQIXXXXXXXXXXGWQVNLKKS 745
+ G+++NL+KS
Sbjct: 527 GSTKEECLSNFKKTMELLVKLGFKLNLEKS 556
Score = 37 (18.1 bits), Expect = 0.00028, Sum P(2) = 0.00028
Identities = 8/47 (17%), Positives = 18/47 (38%)
Query: 299 LSGNDRGHDIGNLANTGLSIMFNLKSLNSYVTTKKFKLINHQKIPLF 345
++ N+ + +N+ S +KS+ + K P+F
Sbjct: 5 VNNNEASSSSTSASNSAESFDLRMKSMEDQINNLSLAFTRFMKEPMF 51
>DICTYBASE|DDB_G0267210 [details] [associations]
symbol:DDB_G0267210_RTE "DIRS1 ORF2 fragment"
species:44689 "Dictyostelium discoideum" [GO:0015074 "DNA
integration" evidence=IEA] [GO:0006310 "DNA recombination"
evidence=IEA] [GO:0006278 "RNA-dependent DNA replication"
evidence=IEA] [GO:0003964 "RNA-directed DNA polymerase activity"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0003677
"DNA binding" evidence=IEA] InterPro:IPR000477 InterPro:IPR002104
InterPro:IPR011010 InterPro:IPR013762 Pfam:PF00078 Pfam:PF00589
PROSITE:PS50878 dictyBase:DDB_G0267210 GO:GO:0003677 GO:GO:0003723
GO:GO:0006310 GO:GO:0003964 GO:GO:0006278 GO:GO:0015074
Gene3D:1.10.443.10 SUPFAM:SSF56349 InterPro:IPR010998
SUPFAM:SSF47823 Gene3D:1.10.150.130 InterPro:IPR023109
EMBL:AAFI02000001 ProtClustDB:CLSZ2431571 RefSeq:XP_647766.1
ProteinModelPortal:Q55H48 EnsemblProtists:DDB0216453 GeneID:8615792
KEGG:ddi:DDB_G0267210 Uniprot:Q55H48
Length = 968
Score = 185 (70.2 bits), Expect = 2.6e-10, P = 2.6e-10
Identities = 34/108 (31%), Positives = 65/108 (60%)
Query: 319 MFNLKSLNSYVTTKKFKLINHQKIPLFLQKNDYLATIDLSQAYCHIPIARRHRRFLCFLY 378
+ +LK LN+Y+ + FK+ + +P +++ Y+ +D+ +AY H+ + ++R F++
Sbjct: 141 VLDLKRLNTYINNQSFKMEGIKNLPSMVKQGYYMVKLDIKKAYLHVLVDPQYRDLFRFVW 200
Query: 379 KGTVYQRTCLSFGLASAPQAFAQLSNWVAVLLRERGVRCLVYLDDFLL 426
KG+ Y+ + FGL++AP+ F L V +LR+ V + YLDD L+
Sbjct: 201 KGSHYRWKAMPFGLSTAPRIFTMLLRPVLRMLRDINVSVIAYLDDLLI 248
Score = 166 (63.5 bits), Expect = 4.8e-08, Sum P(2) = 4.8e-08
Identities = 40/173 (23%), Positives = 88/173 (50%)
Query: 611 RPVFNLKSLNSYVTTKKFKLINHQKIPLFLQKNDYLATIDLSQAYCHIPIARRHRRFLCF 670
RPV +LK LN+Y+ + FK+ + +P +++ Y+ +D+ +AY H+ + ++R F
Sbjct: 139 RPVLDLKRLNTYINNQSFKMEGIKNLPSMVKQGYYMVKLDIKKAYLHVLVDPQYRDLFRF 198
Query: 671 L----------IPMDMSSFRPSLSSPGVCPTIKLGRRLRERGVRCLVYLDDFLLASQDPI 720
+ +P +S+ P + + + P +++ LR+ V + YLDD L+
Sbjct: 199 VWKGSHYRWKAMPFGLST-APRIFTMLLRPVLRM---LRDINVSVIAYLDDLLIVGSTKE 254
Query: 721 VLKNQIXXXXXXXXXXGWQVNLKKSQIIPSHRVDYLGISWDTDLLQVRLPVDK 773
+ + G+++NL+K + P+ + +LG+ D+ +++ +P +K
Sbjct: 255 ECLSNLKKTMDLLVKLGFKLNLEKIVLEPTQLITFLGLQIDSVSMKLLVPKEK 307
Score = 49 (22.3 bits), Expect = 4.8e-08, Sum P(2) = 4.8e-08
Identities = 14/40 (35%), Positives = 22/40 (55%)
Query: 527 LSRQALIPDWHLLPSLTESVFPRWGSRVVPLYVTRNPQDS 566
L + A IP LP++ +VF R GS++ + + PQ S
Sbjct: 40 LHQVATIPS---LPTVPTTVFRRTGSKLTSRWTSVPPQTS 76
>DICTYBASE|DDB_G0267338 [details] [associations]
symbol:DDB_G0267338_RTE "DIRS1 ORF3" species:44689
"Dictyostelium discoideum" [GO:0006278 "RNA-dependent DNA
replication" evidence=IEA] [GO:0003964 "RNA-directed DNA polymerase
activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000477 Pfam:PF00078 PROSITE:PS50878
dictyBase:DDB_G0267338 GO:GO:0003723 GO:GO:0003964 GO:GO:0006278
eggNOG:COG2801 EMBL:AAFI02000001 RefSeq:XP_647698.1
ProteinModelPortal:Q55GY9 EnsemblProtists:DDB0202373 GeneID:8615850
KEGG:ddi:DDB_G0267338 OMA:CHTEALM Uniprot:Q55GY9
Length = 161
Score = 153 (58.9 bits), Expect = 9.5e-10, P = 9.5e-10
Identities = 38/148 (25%), Positives = 75/148 (50%)
Query: 340 QKIPLFLQKNDYLATIDLSQAYCHIPIARRHRRFLCFLYKGTVYQRTCLSFGLASAPQAF 399
+ +P +++ Y+ +D+ +AY H+ + ++R F++KG+ Y+ + FGL++AP+ F
Sbjct: 5 KNLPSMVKQGYYMVKLDIKKAYLHVLVDPQYRDLFRFVWKGSHYRWKTMPFGLSTAPRIF 64
Query: 400 AQLSNWVAVLLRERGVRCLVYLDDFLLASQDSVVLKNQIFQTLP--VNLSGNCSRSGRRS 457
L V +LR+ V + YLDD L+ + + +T+ V L +
Sbjct: 65 TMLLRHVLRMLRDINVSVIAYLDDLLIVGSTKEECLSNLKKTMDLLVKLGFKLNLEKIVL 124
Query: 458 HPTHSLVANHTVVLQSDNKTVITYIRKQ 485
PT S+ + LQ D+K++ + K+
Sbjct: 125 EPTQSITF---LGLQIDSKSMKLLVPKE 149
Score = 112 (44.5 bits), Expect = 0.00020, P = 0.00020
Identities = 32/146 (21%), Positives = 70/146 (47%)
Query: 634 QKIPLFLQKNDYLATIDLSQAYCHIPIARRHRRFLCFLIPMDMSSFR--P-SLSSPGVCP 690
+ +P +++ Y+ +D+ +AY H+ + ++R F+ ++ P LS+
Sbjct: 5 KNLPSMVKQGYYMVKLDIKKAYLHVLVDPQYRDLFRFVWKGSHYRWKTMPFGLSTAPRIF 64
Query: 691 TIKLG---RRLRERGVRCLVYLDDFLLASQDPIVLKNQIXXXXXXXXXXGWQVNLKKSQI 747
T+ L R LR+ V + YLDD L+ + + G+++NL+K +
Sbjct: 65 TMLLRHVLRMLRDINVSVIAYLDDLLIVGSTKEECLSNLKKTMDLLVKLGFKLNLEKIVL 124
Query: 748 IPSHRVDYLGISWDTDLLQVRLPVDK 773
P+ + +LG+ D+ +++ +P +K
Sbjct: 125 EPTQSITFLGLQIDSKSMKLLVPKEK 150
>DICTYBASE|DDB_G0294346 [details] [associations]
symbol:DDB_G0294346_RTE "DIRS1 ORF1/ORF3 fusion
fragment" species:44689 "Dictyostelium discoideum" [GO:0006278
"RNA-dependent DNA replication" evidence=IEA] [GO:0003964
"RNA-directed DNA polymerase activity" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] InterPro:IPR000477 Pfam:PF00078
PROSITE:PS50878 dictyBase:DDB_G0294346 GO:GO:0003723 GO:GO:0003964
GO:GO:0006278 EMBL:AAFI02000253 RefSeq:XP_628722.1
EnsemblProtists:DDB0220064 GeneID:3385386 KEGG:ddi:DDB_G0294346
InParanoid:Q54AM3 ProtClustDB:CLSZ2846537 Uniprot:Q54AM3
Length = 541
Score = 186 (70.5 bits), Expect = 1.0e-09, Sum P(2) = 1.0e-09
Identities = 34/108 (31%), Positives = 65/108 (60%)
Query: 319 MFNLKSLNSYVTTKKFKLINHQKIPLFLQKNDYLATIDLSQAYCHIPIARRHRRFLCFLY 378
+ +LK LN+Y+ + FK+ + +P +++ Y+ +D+ +AY H+ + ++R F++
Sbjct: 398 VLDLKRLNTYINNQSFKMEGIKNLPSMVKQGYYMVKLDIKKAYLHVLVDPQYRDLFRFVW 457
Query: 379 KGTVYQRTCLSFGLASAPQAFAQLSNWVAVLLRERGVRCLVYLDDFLL 426
KG+ Y+ + FGL++AP+ F L V +LR+ V + YLDD L+
Sbjct: 458 KGSHYRWKTMPFGLSTAPRIFTMLLRHVLRMLRDINVSVIAYLDDLLI 505
Score = 37 (18.1 bits), Expect = 1.0e-09, Sum P(2) = 1.0e-09
Identities = 6/15 (40%), Positives = 11/15 (73%)
Query: 154 IMSKLNIHIVPYFIP 168
+++ L IH++P F P
Sbjct: 322 VVNGLKIHLLPNFKP 336
Score = 37 (18.1 bits), Expect = 1.0e-09, Sum P(2) = 1.0e-09
Identities = 8/24 (33%), Positives = 11/24 (45%)
Query: 48 HNLTGFTPLHPPVPRTFMSTDASD 71
H L F P+ P+P + SD
Sbjct: 329 HLLPNFKPMPNPIPISIPEGPKSD 352
>DICTYBASE|DDB_G0267240 [details] [associations]
symbol:DDB_G0267240_RTE "DIRS1 ORF2 fragment"
species:44689 "Dictyostelium discoideum" [GO:0015074 "DNA
integration" evidence=IEA] [GO:0006310 "DNA recombination"
evidence=IEA] [GO:0006278 "RNA-dependent DNA replication"
evidence=IEA] [GO:0003964 "RNA-directed DNA polymerase activity"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0003677
"DNA binding" evidence=IEA] InterPro:IPR000477 InterPro:IPR002104
InterPro:IPR011010 InterPro:IPR013762 Pfam:PF00078 Pfam:PF00589
PROSITE:PS50878 dictyBase:DDB_G0267240 GO:GO:0003677 GO:GO:0003723
GO:GO:0006310 GO:GO:0003964 GO:GO:0006278 GO:GO:0015074
Gene3D:1.10.443.10 SUPFAM:SSF56349 InterPro:IPR010998
SUPFAM:SSF47823 Gene3D:1.10.150.130 InterPro:IPR023109
EMBL:AAFI02000001 ProtClustDB:CLSZ2431571 RefSeq:XP_647781.1
ProteinModelPortal:Q55H37 EnsemblProtists:DDB0216468 GeneID:8615807
KEGG:ddi:DDB_G0267240 Uniprot:Q55H37
Length = 818
Score = 146 (56.5 bits), Expect = 3.3e-06, P = 3.3e-06
Identities = 33/126 (26%), Positives = 64/126 (50%)
Query: 340 QKIPLFLQKNDYLATIDLSQAYCHIPIARRHRRFLCFLYKGTVYQRTCLSFGLASAPQAF 399
+ +P +++ Y+ +D+ +AY H+ + ++R F++KG+ Y+ + FGL++AP+ F
Sbjct: 5 KNLPSMVKQGYYMVKLDIKKAYLHVLVDPQYRDLFRFVWKGSHYRWKTMPFGLSTAPRIF 64
Query: 400 AQLSNWVAVLLRERGVRCLVYLDDFLLASQDSVVLKNQIFQTLP--VNLSGNCSRSGRRS 457
L V +LR+ V + YLDD L+ + + +T+ V L +
Sbjct: 65 TMLLRPVLRMLRDINVSVIAYLDDLLIVGSTKEECLSNLKKTMDLLVKLGFKLNLEKSVL 124
Query: 458 HPTHSL 463
PT S+
Sbjct: 125 EPTQSI 130
>DICTYBASE|DDB_G0267326 [details] [associations]
symbol:DDB_G0267326_RTE "DIRS1 ORF2 fragment"
species:44689 "Dictyostelium discoideum" [GO:0015074 "DNA
integration" evidence=IEA] [GO:0006310 "DNA recombination"
evidence=IEA] [GO:0006278 "RNA-dependent DNA replication"
evidence=IEA] [GO:0003964 "RNA-directed DNA polymerase activity"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0003677
"DNA binding" evidence=IEA] InterPro:IPR000477 InterPro:IPR002104
InterPro:IPR011010 InterPro:IPR013762 Pfam:PF00078 Pfam:PF00589
PROSITE:PS50878 dictyBase:DDB_G0267326 GO:GO:0003677 GO:GO:0003723
GO:GO:0006310 GO:GO:0003964 GO:GO:0006278 GO:GO:0015074
Gene3D:1.10.443.10 SUPFAM:SSF56349 InterPro:IPR010998
SUPFAM:SSF47823 Gene3D:1.10.150.130 InterPro:IPR023109
EMBL:AAFI02000001 ProtClustDB:CLSZ2431571 RefSeq:XP_647724.1
ProteinModelPortal:Q55GZ4 EnsemblProtists:DDB0216509 GeneID:8615846
KEGG:ddi:DDB_G0267326 Uniprot:Q55GZ4
Length = 818
Score = 142 (55.0 bits), Expect = 8.9e-06, P = 8.9e-06
Identities = 33/126 (26%), Positives = 63/126 (50%)
Query: 340 QKIPLFLQKNDYLATIDLSQAYCHIPIARRHRRFLCFLYKGTVYQRTCLSFGLASAPQAF 399
+ +P +++ Y+ +D+ +AY H+ + ++R F++KG+ Y+ + FGL++AP+ F
Sbjct: 5 KNLPSMVKQGYYMVKLDIKKAYLHVLVDPQYRDLFRFVWKGSHYRWKTMPFGLSTAPRIF 64
Query: 400 AQLSNWVAVLLRERGVRCLVYLDDFLLASQDSVVLKNQIFQT--LPVNLSGNCSRSGRRS 457
L +LR+ V + YLDD L+ + + +T L V L +
Sbjct: 65 TMLLRPALRMLRDINVSVIAYLDDLLIVGSTKEECLSNLKKTMNLLVKLGFKLNLEKSVL 124
Query: 458 HPTHSL 463
PT S+
Sbjct: 125 EPTQSI 130
>DICTYBASE|DDB_G0294338 [details] [associations]
symbol:DDB_G0294338_RTE "DGLT-A" species:44689
"Dictyostelium discoideum" [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0006278 "RNA-dependent DNA replication"
evidence=IEA] [GO:0003964 "RNA-directed DNA polymerase activity"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0046872 "metal ion
binding" evidence=IEA] InterPro:IPR000477 InterPro:IPR001878
Pfam:PF00078 Pfam:PF00098 PROSITE:PS50158 PROSITE:PS50878
SMART:SM00343 dictyBase:DDB_G0294338 GO:GO:0046872 GO:GO:0008270
GO:GO:0003723 GO:GO:0003964 GO:GO:0006278 Gene3D:4.10.60.10
InterPro:IPR005162 Pfam:PF03732 EMBL:AAFI02000250
RefSeq:XP_628729.1 ProteinModelPortal:Q54AM7
EnsemblProtists:DDB0215166 GeneID:3385393 KEGG:ddi:DDB_G0294338
InParanoid:Q54AM7 Uniprot:Q54AM7
Length = 693
Score = 132 (51.5 bits), Expect = 8.5e-05, P = 8.5e-05
Identities = 73/332 (21%), Positives = 136/332 (40%)
Query: 607 DGTMRPVFNLKSLNSYVTTKKFKLINHQKIPLFLQKNDYLATIDLSQAYCHIPIARRHRR 666
DG+MR N LN+ ++ + + +I ++ + + +D+ Y I I +
Sbjct: 334 DGSMRMCINYTKLNNITVKDRYPIPDINEIWNQIKGSHVYSKLDMISGYYQIRIREGDKY 393
Query: 667 FLCFLIPMDMSSFRPSLSSPGVC--PTI---KLGRRLRERGVRCLV-YLDDFLLASQDPI 720
F +P + F ++ G+C P + + + +E L + DD L S+ +
Sbjct: 394 LTAFSVPQGLFEF--NVMPFGLCNAPAVFQRTIHKIFKEENRLTLQSFYDDILSHSKSVM 451
Query: 721 VLKNQIXXXXXXXXXXGWQVNLKKSQIIPSHRVDYLGISWDTDLLQVRLPVDKIPPLRDR 780
+ L K Q V +LG +++ +Q+ D++ PL
Sbjct: 452 DHTPHLEGIFKKMRDNKLLAKLSKCQFF-QEEVKFLGHIIESNGVQI--DYDRLDPLMKL 508
Query: 781 LQTQALIELKWFYHNLTGFTPLHPPVPRTF-MSTDASDVGWGAMV----GNVSVQG-VWT 834
L + + EL+ L F P F + TDASD+G GA + G +S
Sbjct: 509 LDPKNVKELQRLIGTLNFFRKFKP-----FKLETDASDIGVGATLCQDHGIISFYSRTIR 563
Query: 835 QAQRSWHINLKELFTVRAAISSNPSLVANHTVVLQSDNKTVIAYIRKQ-GGLRSHALLAE 893
++++ + KE +V A+ ++ ++ +DN V +++R G +R+ +
Sbjct: 564 DTEKNYSASEKECLSVVCALEEFHYIIGTQETLVVTDNSAV-SFLRNDLGKIRNKRFINW 622
Query: 894 TKKLLLIMSKLNIHIVPYFIPGKCNSLADALS 925
KL + NI + GK N+ ADALS
Sbjct: 623 NVKL----ASYNITFK--YRSGKENTFADALS 648
>DICTYBASE|DDB_G0267342 [details] [associations]
symbol:DDB_G0267342_RTE "DIRS1 ORF2 fragment"
species:44689 "Dictyostelium discoideum" [GO:0015074 "DNA
integration" evidence=IEA] [GO:0006310 "DNA recombination"
evidence=IEA] [GO:0006278 "RNA-dependent DNA replication"
evidence=IEA] [GO:0003964 "RNA-directed DNA polymerase activity"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0003677
"DNA binding" evidence=IEA] InterPro:IPR000477 InterPro:IPR002104
InterPro:IPR011010 InterPro:IPR013762 Pfam:PF00078 Pfam:PF00589
PROSITE:PS50878 dictyBase:DDB_G0267342 GO:GO:0003677 GO:GO:0003723
GO:GO:0006310 GO:GO:0003964 GO:GO:0006278 GO:GO:0015074
Gene3D:1.10.443.10 SUPFAM:SSF56349 InterPro:IPR010998
SUPFAM:SSF47823 Gene3D:1.10.150.130 InterPro:IPR023109
EMBL:AAFI02000001 RefSeq:XP_647701.1 ProteinModelPortal:Q55GY6
EnsemblProtists:DDB0216513 GeneID:8615853 KEGG:ddi:DDB_G0267342
ProtClustDB:CLSZ2431571 Uniprot:Q55GY6
Length = 925
Score = 143 (55.4 bits), Expect = 0.00015, Sum P(2) = 0.00015
Identities = 42/185 (22%), Positives = 85/185 (45%)
Query: 282 NNGSRPQIASDRSSNGLLSGNDRGHDIGNLANTGLSIMFNLKSLNSYVTTKKFKLINHQK 341
N+ SR Q + D S D + ++ T + L ++ + L+ K
Sbjct: 54 NSNSRSQPSHDNSDTENEQSEDESSNNVDVP-TDYQLSDTLLGQYKHMVNNQGLLVEGIK 112
Query: 342 -IPLFLQKNDYLATIDLSQAYCHIPIARRHRRFLCFLYKGTVYQRTCLSFGLASAPQAFA 400
+P +++ Y+ +D+ +AY H+ + ++R F++KG+ Y+ + FGL++A + F
Sbjct: 113 NLPSMVKQGYYMVKLDIKKAYLHVLVDPQYRDLFRFVWKGSHYRWKTMPFGLSTAHRIFT 172
Query: 401 QLSNWVAVLLRERGVRCLVYLDDFLLASQDSVVLKNQIFQTLPVNLSGNCSRSGRRS--H 458
L V +LR+ V + YLDD L+ + + +T+ + + + +S
Sbjct: 173 MLLRPVLRMLRDINVSVIAYLDDLLIVGSTKEECLSNLKKTMDLLIKLGFKLNLEKSVLE 232
Query: 459 PTHSL 463
PT S+
Sbjct: 233 PTQSI 237
Score = 38 (18.4 bits), Expect = 0.00015, Sum P(2) = 0.00015
Identities = 11/38 (28%), Positives = 19/38 (50%)
Query: 607 DGTMRPVFNLKSLNSYVTTKKFKLINHQKIPLFLQKND 644
D T V ++ L +Y+ K + H P+F+ KN+
Sbjct: 803 DDTNSQVCPVRHLATYLRASKGRRKPHSGDPVFI-KNE 839
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.323 0.137 0.422 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 960 909 0.00089 122 3 11 22 0.49 33
37 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 10
No. of states in DFA: 623 (66 KB)
Total size of DFA: 436 KB (2202 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 74.09u 0.11s 74.20t Elapsed: 00:00:34
Total cpu time: 74.09u 0.11s 74.20t Elapsed: 00:00:34
Start: Thu Aug 15 12:01:34 2013 End: Thu Aug 15 12:02:08 2013