RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy15121
(960 letters)
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 61.8 bits (149), Expect = 8e-10
Identities = 105/711 (14%), Positives = 185/711 (26%), Gaps = 262/711 (36%)
Query: 162 IVPYFIPG-----KCNSLADALSRQAL----IPDWHLLPSLTESVFQRWGIESCAALCDP 212
I+ F C + D + L I + + + L
Sbjct: 21 ILSVFEDAFVDNFDCKDVQDMP-KSILSKEEIDHIIMSKDAVSGTLRLFWT-----LLSK 74
Query: 213 ESPGQQGGIHRCLLKKVGFQASVGLPAPASTSSSIASLERRPGLICNSSSSVAEGLLVSR 272
+ Q + L F S I + +R+P ++ R
Sbjct: 75 QEEMVQKFVEEVLRINYKFLMS-----------PIKTEQRQPSMMTRMYIEQ-----RDR 118
Query: 273 LEGAGNS-PPNNGSRPQ--------IASDRSSNGL-LSGNDRGHDIGNLANTGLSIMFNL 322
L N SR Q + R + + + G + +G + + L
Sbjct: 119 LYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDG---------VLGSGKTWV-AL 168
Query: 323 KSLNSYVTTKKFKLINHQKIPLFLQKNDYLATIDLSQAYCHIPIAR-RHRRFLCFLYKGT 381
SY K + + ++L C+ P + L +
Sbjct: 169 DVCLSYKVQCKM--------------DFKIFWLNLKN--CNSPETVLEMLQKLLYQIDPN 212
Query: 382 VYQRTCLSFGLASAPQAFAQLSNWVAVLLRERG-VRCLVYLDDFLLASQDSVVLKNQIFQ 440
R S ++ + + LL+ + CL+ L + Q++ F
Sbjct: 213 WTSR---SDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNV----QNAKAWN--AF- 262
Query: 441 TLPVNLSGNC-----SRSGRRSHPTHSLVANHTVVLQSDNKTVITYIRKQVGLRSNALLA 495
+ +C +R V + L + T I+ + L
Sbjct: 263 ------NLSCKILLTTRF--------KQVTD---FLSAATTTHISLDHHSMTL----TPD 301
Query: 496 ETKKLLLIMSKLNIHIVPYFIPGKCNSLADALSRQAL--IPDWHLLPSL-TESV--FP-R 549
E K LLL L+ L R+ L P S+ ES+
Sbjct: 302 EVKSLLL--KYLDCRP-------------QDLPREVLTTNP---RRLSIIAESIRDGLAT 343
Query: 550 WG----------SRVVPLYVTR-NPQDSKAAFIDAFSRKWDFKLAWVFP-----PPPLLQ 593
W + ++ + P + + F L+ VFP P LL
Sbjct: 344 WDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDR---------LS-VFPPSAHIPTILLS 393
Query: 594 VL------------------------------HHLNDAQGLYGDGTMRPVFNLKSLNSYV 623
++ + +Y + + N +L+
Sbjct: 394 LIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPS---IYLE-LKVKLENEYALHR-- 447
Query: 624 TTKKFKLINHQKIPLFLQKNDYLATIDLSQAYCHIPIARRHRRFLCFLIPMDM----SSF 679
+++H IP +D + Y HI H L ++ + F
Sbjct: 448 -----SIVDHYNIPKTFDSDDLIPPYLDQYFYSHIG---HH------LKNIEHPERMTLF 493
Query: 680 RPSLSSPGVCPTIKLGRRLRERGVRCLVYLD-DFLLA----SQDPIVLKNQILQTLQLLT 734
R +V+LD FL IL TLQ
Sbjct: 494 R-------------------------MVFLDFRFLEQKIRHDSTAWNASGSILNTLQ--- 525
Query: 735 YLGWQVNLKKSQIIPSHR---------VDYLG-------ISWDTDLLQVRL 769
Q+ K I + +D+L S TDLL++ L
Sbjct: 526 ----QLKFYKPYICDNDPKYERLVNAILDFLPKIEENLICSKYTDLLRIAL 572
Score = 55.2 bits (132), Expect = 8e-08
Identities = 95/572 (16%), Positives = 150/572 (26%), Gaps = 203/572 (35%)
Query: 511 IVPYFIPG-----KCNSLADALSRQAL----------IPD---------WHLLPSLTESV 546
I+ F C + D + L D W LL E V
Sbjct: 21 ILSVFEDAFVDNFDCKDVQDMP-KSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMV 79
Query: 547 FPRWGSRVVPLY---------VTRNPQDSKAAFIDAFSRKWD----FKLAWVFPPPPLLQ 593
+ Y R P +I+ R ++ F V P L+
Sbjct: 80 QKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLK 139
Query: 594 V---LHHLNDAQG--LYGD-GTMRPVFNLKSLNSYVTTKKFKLINHQKIPLFLQKNDYLA 647
+ L L A+ + G G+ + L SY K + +
Sbjct: 140 LRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKM--------------DFKIF 185
Query: 648 TIDLSQAYCHIPIAR-RHRRFLCFLIPMDMSSFRPSLSSPGVCPTIKLGRRLR-----ER 701
++L C+ P + L + I + +S R SS + LR +
Sbjct: 186 WLNLKN--CNSPETVLEMLQKLLYQIDPNWTS-RSDHSSNIKLRIHSIQAELRRLLKSKP 242
Query: 702 GVRCLVYLDDFLLASQDPIVLKN-----QILQT---LQLLTYLGWQVNLKKSQIIPSHRV 753
CL+ L + Q+ +IL T Q+ +L + I H
Sbjct: 243 YENCLLVLLNV----QNAKAWNAFNLSCKILLTTRFKQVTDFLS---AATTTHISLDHHS 295
Query: 754 D-------------YLGISWDTDLLQVRLP--VDKIPPL---------RDRLQT------ 783
YL LP V P RD L T
Sbjct: 296 MTLTPDEVKSLLLKYLDCRPQD------LPREVLTTNPRRLSIIAESIRDGLATWDNWKH 349
Query: 784 ------QALI----------ELKWFYHNLTGFTPLHPPVPRTFMSTDASDVGWGAMVGNV 827
+I E + + L+ F P +P +S + W ++ +
Sbjct: 350 VNCDKLTTIIESSLNVLEPAEYRKMFDRLSVF-PPSAHIPTILLS-----LIWFDVIKSD 403
Query: 828 SVQGVWTQAQRSWHINLKELFTVRAAISSNPSLVANHTVVLQSDNKTVIAYIRKQGGLRS 887
V V + +L SL ++ K I
Sbjct: 404 -VMVV-----------VNKLH--------KYSL-------VEKQPKESTISI-------- 428
Query: 888 HALLAETKKLLLIMSKLNIHIVPYFIPGKCNSLADALSRQALIPDW-----------HL- 935
++ E K L L+ IV ++ K D LIP + HL
Sbjct: 429 PSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDD------LIPPYLDQYFYSHIGHHLK 482
Query: 936 ------LPSLTESVFQ--RWGTISSCTEHQGT 959
+L VF R+ + H T
Sbjct: 483 NIEHPERMTLFRMVFLDFRF--LEQKIRHDST 512
Score = 51.4 bits (122), Expect = 2e-06
Identities = 84/537 (15%), Positives = 151/537 (28%), Gaps = 139/537 (25%)
Query: 18 DPIVLKNQILQTLQLLTYLAQALIELK---W-FYHNLTGF--TPLHPPVPRTFMSTDASD 71
D V + LQ L QAL+EL+ + G T + V ++ D
Sbjct: 122 DNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMD 181
Query: 72 VG--WGAMVGNV-SVQGVWTQAQRSWHINLKELFTVRAAISSNPSLVANHTVVLQSDNKT 128
W + N S + V Q+ + + +T R+ SSN L +
Sbjct: 182 FKIFW-LNLKNCNSPETVLEMLQKLLY-QIDPNWTSRSDHSSNIKLRIHSI--------- 230
Query: 129 VIAYIRKQGGLRSHALLAETKKLLLIMSKL-NIHIVPYFIPGKC--------NSLADALS 179
Q LR + LL++ + N F C + D LS
Sbjct: 231 -------QAELRRLLKSKPYENCLLVLLNVQNAKAWNAF-NLSCKILLTTRFKQVTDFLS 282
Query: 180 --RQALIPDWHLLPSLTE----SVFQRWGIESCAALCDPES-PGQQGGIHRCLLKKVG-- 230
I H +LT S+ ++ C P+ P + + L +
Sbjct: 283 AATTTHISLDHHSMTLTPDEVKSLLLKY------LDCRPQDLPREVLTTNPRRLSIIAES 336
Query: 231 ---------FQASVGLPAPAST-SSSIASLERRPGL---------ICNSSSSVAEGLLVS 271
V + SS+ LE P + S+ + LL S
Sbjct: 337 IRDGLATWDNWKHVNCDKLTTIIESSLNVLE--PAEYRKMFDRLSVFPPSAHIPTILL-S 393
Query: 272 RL--EGAGNSPPNNGSRPQIASDRSSNGLLSGNDRG-----HDIGNLANTGLSIMFNLKS 324
+ + + + + L+ + + + +K
Sbjct: 394 LIWFDVIKSDVM------VVVNKLHKYSLVEKQPKESTISIPS--------IYLELKVKL 439
Query: 325 LNSYVTTKKFKLINHQKIPLFLQKNDYLATIDLSQAYCHIPIARRHRRFLCFLYKGTVYQ 384
N Y + +++H IP +D + Y HI H L +
Sbjct: 440 ENEYALHRS--IVDHYNIPKTFDSDDLIPPYLDQYFYSHIG---HH------LKNIEHPE 488
Query: 385 RTCLSFGLASAPQAFAQLSNWVAVLLRERGV--RCLVYLDDFLLASQDSVVLKNQIFQTL 442
R L F F ++ +R + + L Q K I
Sbjct: 489 RMTL-F-----RMVFLDF-RFLEQKIRHDSTAWNASGSILNTL---QQLKFYKPYICD-- 536
Query: 443 PVNLSGNCSRSGRR---------SHPTHSLVANHTVVLQ----SDNKTVITYIRKQV 486
N + R + + + +T +L+ ++++ + KQV
Sbjct: 537 ------NDPKYERLVNAILDFLPKIEENLICSKYTDLLRIALMAEDEAIFEEAHKQV 587
Score = 32.9 bits (74), Expect = 0.72
Identities = 61/413 (14%), Positives = 118/413 (28%), Gaps = 150/413 (36%)
Query: 564 QDSKAAFIDAFSRKWDFKLAWVFPPPPLLQVLHHLNDAQGLYGDGTMRPVFNLKSLNSYV 623
+D + F DAF +D K + D + +
Sbjct: 19 KDILSVFEDAFVDNFDCK---------------DVQDM--------PKSIL--------- 46
Query: 624 TTKKFKLINHQKIPLFLQKNDYLATIDLSQAYCHIPIARRHRRFLCFLIPMDMSSFRPSL 683
+ ++ I + K+ +S R F L
Sbjct: 47 SKEEIDHI-------IMSKD------AVSGTL---------RLFWTLL------------ 72
Query: 684 SSPGVCPTIKLGRRLRERGVRCLVYLDDFLLASQDPIVLKNQILQTLQLLTYLGWQVN-L 742
+E V+ ++++ L + Y + ++ +
Sbjct: 73 -------------SKQEEMVQ--KFVEEVL--RIN----------------Y-KFLMSPI 98
Query: 743 KKSQIIPSHR----VDYLGISWDTDLLQVRLPVDKIPPLRDRLQTQALIELK---W-FYH 794
K Q PS ++ ++ + + + V ++ P +L+ QAL+EL+
Sbjct: 99 KTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPY-LKLR-QALLELRPAKNVLID 156
Query: 795 NLTGF--TPLHPPVPRTFMSTDASDVG--WGAMVGNV-SVQGVWTQAQRSWHINLKELFT 849
+ G T + V ++ D W + N S + V Q+ + + +T
Sbjct: 157 GVLGSGKTWVALDVCLSYKVQCKMDFKIFW-LNLKNCNSPETVLEMLQKLLY-QIDPNWT 214
Query: 850 VRAAISSNPSLVANHTVVLQSDNKTVIAYIRKQGGLRSHALLAETKKLLLIMSKL-NIHI 908
R+ SSN L + Q LR + LL++ + N
Sbjct: 215 SRSDHSSNIKLRIHSI----------------QAELRRLLKSKPYENCLLVLLNVQNAKA 258
Query: 909 VPYFIPGKC--------NSLADALS--RQALIPDWHLLPSLTE----SVFQRW 947
F C + D LS I H +LT S+ ++
Sbjct: 259 WNAF-NLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKY 310
Score = 29.8 bits (66), Expect = 5.9
Identities = 60/415 (14%), Positives = 118/415 (28%), Gaps = 144/415 (34%)
Query: 4 RCLVYLDDFLLASQDPIVLKN-----QILQT---LQLLTYLAQALIELKWFYHNLTGFTP 55
CL+ L + Q+ +IL T Q+ +L+ A H+ TP
Sbjct: 245 NCLLVLLNV----QNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTP 300
Query: 56 LHPPVPRTFMSTDASDVGWGAMVGNVSVQGVWTQAQRSWHINLKELFTVRAAISSNP--- 112
D S+ + ++L R +++NP
Sbjct: 301 ------------DEV----------KSLLLKYL------DCRPQDL--PREVLTTNPRRL 330
Query: 113 SLVANHTVVLQSDNKTVIAYIRKQGGLRSHALLAETKKLLLIMSKLNIHIVPYFIPGKCN 172
S++A D + KL I+ + N
Sbjct: 331 SIIAE----SIRDGLATWDNWKHV----------NCDKLTTIIES--------SL----N 364
Query: 173 SLADALSRQ-----ALIPDWHLLPSLTESVFQRWG--IESCAALCDPESPGQQGGIH-RC 224
L A R+ ++ P +P++ S+ W I+S D + +H
Sbjct: 365 VLEPAEYRKMFDRLSVFPPSAHIPTILLSLI--WFDVIKS-----DVMVVVNK--LHKYS 415
Query: 225 LLKKVGFQASVGLPA----PASTSSSIASLERRPGLICNSSSSVAEGLLVSRLEGAGNSP 280
L++K ++++ +P+ + +L R +V
Sbjct: 416 LVEKQPKESTISIPSIYLELKVKLENEYALHRS---------------IVDHYNIPKTFD 460
Query: 281 PNNGSRPQIASDRSSNGLLSGNDR------GHDIGNLANTGLSIMFNLKSLN-SYVTTKK 333
++ P + D+ GH + N+ + +F + L+ ++ K
Sbjct: 461 SDDLIPPYL-------------DQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQK- 506
Query: 334 FKLINHQKIPLFLQK--NDYLATIDLSQAYCHIPIARRHRRF-------LCFLYK 379
I H + L + + Y I ++ L FL K
Sbjct: 507 ---IRHDSTAWNASGSILNTLQQLKFYKPY----ICDNDPKYERLVNAILDFLPK 554
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 54.7 bits (131), Expect = 1e-07
Identities = 92/654 (14%), Positives = 173/654 (26%), Gaps = 261/654 (39%)
Query: 418 LVYLDDFLLASQDSVVLKNQIFQTLPVNLSGNCSRSGRRSHPTHSLVANHTVVLQSDNKT 477
LV F +ASQ L+ Q + LP PT A D++
Sbjct: 21 LVPTASFFIASQ----LQEQFNKILP--------------EPTEGFAA--------DDEP 54
Query: 478 V---------ITYIRKQVGLRSNALLAETKKLLL------IMSKLNIHIVPYFIPGKCNS 522
+ Y+ V + L L + +IH + + +
Sbjct: 55 TTPAELVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQ--EN 112
Query: 523 LADALSRQALIPDWHLLPSLTESVFPRWGSRVVPLYVTRNPQDSKAAFIDAF-----SRK 577
+ + LI ++ + + F + + L+ R + A + F +
Sbjct: 113 DTTLVKTKELIKNYITARIMAKRPFDKKSNS--ALF--RAVGEGNAQLVAIFGGQGNTDD 168
Query: 578 WDFK-LAWVF-PPPPLL--------QVLHHL----NDAQGLYGDGTMRPVFNLKSLNSYV 623
+ F+ L ++ L+ + L L DA+ ++ G N+
Sbjct: 169 Y-FEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQG-----LNILEW---- 218
Query: 624 TTKKFKLINHQKIPLFLQKNDYLAT-------IDLSQAYCHIPIARRHRRFLCFLIPMDM 676
L N P DYL + I + Q H + L+
Sbjct: 219 ------LENPSNTP----DKDYLLSIPISCPLIGVIQL-AHYVVT-------AKLLGFTP 260
Query: 677 SSFRPSLSSPGVCPTIKLGRRLRERGVRCLVYLDDFLLASQDPIVLKNQILQTLQLLTYL 736
R L +G+ + + + + + + + +L ++
Sbjct: 261 GELRSYLKGATGH----------SQGL--VTAV--AIAETDSWESFFVSVRKAITVLFFI 306
Query: 737 GWQVNLKKSQIIPSHRVDYLGISWDTDLLQVRLPVDKIPPLRDRLQTQALIELKWFYHNL 796
G + + P +PP
Sbjct: 307 GVR----------CYEA---------------YPNTSLPPS------------------- 322
Query: 797 TGFTPLHPPVPRTFMSTDASDVGWGA---MVGNVSVQGVWTQAQRSWHINL--KELFTVR 851
+ D+ + G M +S+ + TQ Q ++N L +
Sbjct: 323 --------------ILEDSLENNEGVPSPM---LSISNL-TQEQVQDYVNKTNSHLPAGK 364
Query: 852 A-AISSNPSLV--ANHTVV------LQSDNKTVIAYIRKQ----GGLRSHALLAETKKLL 898
I SLV A + VV L + +RK G +S +E +KL
Sbjct: 365 QVEI----SLVNGAKNLVVSGPPQSLYG----LNLTLRKAKAPSGLDQSRIPFSE-RKLK 415
Query: 899 LIMSKLNIHIVPYFIPGKCNSLADA-------LSRQAL--------IP-----DWH---- 934
L + P+ + L A L + + IP D
Sbjct: 416 FSNRFLPV-ASPFH----SHLLVPASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSDLRV 470
Query: 935 ----LLPSLTESVFQ---RWGTISSCTE-H--------------------QGTG 960
+ + + + + +W T + H GTG
Sbjct: 471 LSGSISERIVDCIIRLPVKWETTTQFKATHILDFGPGGASGLGVLTHRNKDGTG 524
Score = 54.7 bits (131), Expect = 2e-07
Identities = 113/748 (15%), Positives = 207/748 (27%), Gaps = 283/748 (37%)
Query: 15 ASQDPIVLKNQILQ-TLQLLTYLAQALIELKWFYHNLTGFTPLHPPVPRTFMSTD--ASD 71
S P+ L + L+ L + T +L+ F + P F + D +
Sbjct: 4 YSTRPLTLSHGSLEHVLLVPTASFFIASQLQ------EQFNKILPEPTEGFAADDEPTTP 57
Query: 72 VG-WGAMVGNVSVQGVWTQAQRSWHINLKELFT--VRAAISSNPSLVAN-HTVVLQSDNK 127
G +G VS ++ + + L T + N + H + + +
Sbjct: 58 AELVGKFLGYVSSLVEPSKVGQFDQV-LNLCLTEFENCYLEGN-----DIHALAAKLLQE 111
Query: 128 TVIAYIRKQGGLRSHALLAETKKLLLIMSKLNIHIVPYFIPGKCNSLADALSRQALIPDW 187
++ + +++ Y A ++++ P
Sbjct: 112 NDTTLVKTKELIKN-----------------------YI-------TARIMAKR---PFD 138
Query: 188 HLLPS-LTESVFQRWGIESCAALCDPESPGQQGGIHRCL--LKKVGFQASVGLPAP--AS 242
S L +V G A+ G QG L+ + +Q L
Sbjct: 139 KKSNSALFRAV--GEGNAQLVAIF-----GGQGNTDDYFEELRDL-YQTYHVLVGDLIKF 190
Query: 243 TSSSIASLERRPGLICNSSSSVAEGL-LVSRLEGAGNSPPNNGSRPQIASDRSSNGLLSG 301
++ +++ L R ++ +GL ++ LE N+P
Sbjct: 191 SAETLSELIRTTL---DAEKVFTQGLNILEWLENPSNTP--------------------- 226
Query: 302 NDRGHDIGNLANTGLSIMFNLKSLNSYVTTKKFKLINHQKIPLFLQKNDYLATIDLSQAY 361
D L + +S PL I + Q
Sbjct: 227 -----DKDYLLSIPIS------------------------CPL----------IGVIQL- 246
Query: 362 CHIPIARR-----HRRFLCFLYKGTVYQRTCLSFGLASAPQAFAQLSNWVAVLLRERGVR 416
H + + +L KG T S GL +A A A+ +W + +
Sbjct: 247 AHYVVTAKLLGFTPGELRSYL-KGA----TGHSQGLVTA-VAIAETDSWES--FFVSVRK 298
Query: 417 CLVYLDDFL--LASQDSVVLKNQIF--QTLPVNLSGNCSRSGRRSHPTHSLVANHTVVLQ 472
+ L F + + + +LP ++ + + P+ L +
Sbjct: 299 AITVL--FFIGVRCY-------EAYPNTSLPPSILEDSLENN-EGVPSPML-----SISN 343
Query: 473 SDNKTVITYIRKQVGLRSNALLAETKKLLLIMSKLNIHIVPYFIPGKCNSLADALSRQAL 532
+ V Y+ K +N+ L K+ + I SL +
Sbjct: 344 LTQEQVQDYVNK-----TNSHLPAGKQ---------VEI----------SLVNG------ 373
Query: 533 IPDWHLLPSLTESVFPRWGSRVV---P--LY-VTRNPQDSKA-AFIDA----FS-RKWDF 580
+ + VV P LY + + +KA + +D FS RK F
Sbjct: 374 ---------------AK--NLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSERKLKF 416
Query: 581 KLAWVFPP---PPLLQVLH--HLNDA-QGLYGDGTMRPV-FNLKSLNSYVTTKKFKLINH 633
F P P H L A + D V FN K +
Sbjct: 417 S--NRFLPVASP-----FHSHLLVPASDLINKDLVKNNVSFNAKDI-------------- 455
Query: 634 QKIPLF-------LQKNDYLATIDLSQAYCHIPI--------ARRHRRFLCFLIPMDMSS 678
+IP++ L+ + + +P+ H L F
Sbjct: 456 -QIPVYDTFDGSDLRVLSGSISERIVDCIIRLPVKWETTTQFKATH--ILDF-------- 504
Query: 679 FRPSLSSPGVCPTI-KLGRRLRE-RGVR 704
PG + L R ++ GVR
Sbjct: 505 ------GPGGASGLGVLTHRNKDGTGVR 526
>1rw3_A POL polyprotein; RNA and DNA dependent DNA polymerase, reverse
transcriptase, transferase, replication; 3.00A {Moloney
murine leukemia virus} SCOP: e.8.1.2
Length = 455
Score = 52.3 bits (126), Expect = 5e-07
Identities = 17/89 (19%), Positives = 32/89 (35%), Gaps = 10/89 (11%)
Query: 351 YLATIDLSQAYCHIPIARRHR-------RFLCFLYKGTVYQRTCLSFGLASAPQAFAQLS 403
+ +DL A+ + + + R G T L G ++P F +
Sbjct: 126 WYTVLDLKDAFFCLRLHPTSQPLFAFEWRDPEMGISGQ-LTWTRLPQGFKNSPTLFDEAL 184
Query: 404 NWV--AVLLRERGVRCLVYLDDFLLASQD 430
+ ++ + L Y+DD LLA+
Sbjct: 185 HRDLADFRIQHPDLILLQYVDDLLLAATS 213
Score = 45.8 bits (109), Expect = 6e-05
Identities = 58/363 (15%), Positives = 98/363 (26%), Gaps = 98/363 (26%)
Query: 606 GDGTMRPVFNLKSLNSYVTTKKFKLINHQKIPLFLQKNDYLA-------TIDLSQAYCHI 658
G RPV +L+ +N H +P L +DL A+ +
Sbjct: 86 GTNDYRPVQDLREVNK-RVED-----IHPTVPNPYNLLSGLPPSHQWYTVLDLKDAFFCL 139
Query: 659 PIARRHRRFLCFLIPMDMSSFRPSL----------SSPGVC----PTIKLGRRLRERGVR 704
+ + F L +SP + R++ +
Sbjct: 140 RLHPTSQPLFAFEWRDPEMGISGQLTWTRLPQGFKNSPTLFDEALHRDLADFRIQHPDLI 199
Query: 705 CLVYLDDFLLASQDPIVLKNQILQTLQLLTYLGWQVNLKKSQIIPSHRVDYLG--ISWDT 762
L Y+DD LLA+ + + LQ L LG++ + KK+Q I +V YLG +
Sbjct: 200 LLQYVDDLLLAATSELDCQQGTRALLQTLGNLGYRASAKKAQ-ICQKQVKYLGYLLKEG- 257
Query: 763 DLLQVRLPVDKI--------P----------------------------PLRDRL----- 781
Q L + P PL
Sbjct: 258 ---QRWLTEARKETVMGQPTPKTPRQLREFLGTAGFCRLWIPGFAEMAAPLYPLTKTGTL 314
Query: 782 ------QTQALIELKWFYHNLTGFTPLHPPVP-RTFM-STDASDVGWGAMVGNVSVQGVW 833
Q +A E+K L L P + F D V +
Sbjct: 315 FNWGPDQQKAYQEIK---QALLTAPALGLPDLTKPFELFVDEKQGYAKG-VLTQKLGPWR 370
Query: 834 ----------TQAQRSWHINLKELFTVRAAISSNPSLVANHTVVLQSDNKTVIAYIRKQG 883
W L+ + + L +V+++ + V A +++
Sbjct: 371 RPVAYLSKKLDPVAAGWPPCLRMVAAIAVLTKDAGKLTMGQPLVIKAPHA-VEALVKQPP 429
Query: 884 GLR 886
Sbjct: 430 DRW 432
Score = 31.5 bits (72), Expect = 1.5
Identities = 15/115 (13%), Positives = 30/115 (26%), Gaps = 17/115 (14%)
Query: 38 QALIELKWFYHNLTGFTPLHPPVP-RTFM-STDASDVGWGAMVGNVSVQGVW-------- 87
+A E+K L L P + F D V +
Sbjct: 323 KAYQEIK---QALLTAPALGLPDLTKPFELFVDEKQGYAKG-VLTQKLGPWRRPVAYLSK 378
Query: 88 --TQAQRSWHINLKELFTVRAAISSNPSLVANHTVVLQSDNKTVIAYIRKQGGLR 140
W L+ + + L +V+++ + V A +++
Sbjct: 379 KLDPVAAGWPPCLRMVAAIAVLTKDAGKLTMGQPLVIKAPHA-VEALVKQPPDRW 432
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 35.3 bits (80), Expect = 0.031
Identities = 12/28 (42%), Positives = 18/28 (64%), Gaps = 4/28 (14%)
Query: 226 LKKVGFQASVGLPAPASTSS-SI-ASLE 251
LKK+ QAS+ L A S + +I A++E
Sbjct: 22 LKKL--QASLKLYADDSAPALAIKATME 47
Score = 29.1 bits (64), Expect = 3.6
Identities = 10/32 (31%), Positives = 15/32 (46%), Gaps = 5/32 (15%)
Query: 89 QAQRSWHINLKELFTVRAAISSNPSLVANHTV 120
QA + +LK L+ A S P+L T+
Sbjct: 20 QALKKLQASLK-LY----ADDSAPALAIKATM 46
Score = 29.1 bits (64), Expect = 3.6
Identities = 10/32 (31%), Positives = 15/32 (46%), Gaps = 5/32 (15%)
Query: 835 QAQRSWHINLKELFTVRAAISSNPSLVANHTV 866
QA + +LK L+ A S P+L T+
Sbjct: 20 QALKKLQASLK-LY----ADDSAPALAIKATM 46
>3kyl_A Telomerase reverse transcriptase; reverse transcriptase; 2.70A
{Tribolium castaneum} PDB: 3du5_A 3du6_A
Length = 596
Score = 35.3 bits (80), Expect = 0.094
Identities = 14/75 (18%), Positives = 28/75 (37%), Gaps = 11/75 (14%)
Query: 700 ERGVRCLVYLDDFLLASQDPIVLKNQILQTLQLLTYLGWQVNLKKSQI------IPSHRV 753
++ +DD+ S +++ L+ +QVN K++ P +
Sbjct: 333 DKDAFIHRTVDDYFFCSPH----PHKVYDFELLIKG-VYQVNPTKTRTNLPTHRHPQDEI 387
Query: 754 DYLGISWDTDLLQVR 768
Y G ++ QVR
Sbjct: 388 PYCGKIFNLTTRQVR 402
>3hst_B Protein RV2228C/MT2287; ribonuclease H1, RV2228C N-terminal domain,
fusion protein, maltose binding protein, HYDR; HET: MLR
TAR; 2.25A {Mycobacterium tuberculosis}
Length = 141
Score = 30.3 bits (69), Expect = 1.2
Identities = 14/69 (20%), Positives = 27/69 (39%), Gaps = 11/69 (15%)
Query: 469 VVLQSDNKTVI-----TYIRKQVGLRSNALLAETKKLLLIMSKLNIHIVPYFIPGKCNSL 523
+ D+K V+ + K L L + + L ++N ++P N+
Sbjct: 69 AAVLMDSKLVVEQMSGRWKVKHPDLL--KLYVQAQALASQFRRINYE----WVPRARNTY 122
Query: 524 ADALSRQAL 532
AD L+ A+
Sbjct: 123 ADRLANDAM 131
Score = 28.0 bits (63), Expect = 7.1
Identities = 14/69 (20%), Positives = 27/69 (39%), Gaps = 11/69 (15%)
Query: 120 VVLQSDNKTVI-----AYIRKQGGLRSHALLAETKKLLLIMSKLNIHIVPYFIPGKCNSL 174
+ D+K V+ + K L L + + L ++N ++P N+
Sbjct: 69 AAVLMDSKLVVEQMSGRWKVKHPDLL--KLYVQAQALASQFRRINYE----WVPRARNTY 122
Query: 175 ADALSRQAL 183
AD L+ A+
Sbjct: 123 ADRLANDAM 131
Score = 28.0 bits (63), Expect = 7.1
Identities = 14/69 (20%), Positives = 27/69 (39%), Gaps = 11/69 (15%)
Query: 866 VVLQSDNKTVI-----AYIRKQGGLRSHALLAETKKLLLIMSKLNIHIVPYFIPGKCNSL 920
+ D+K V+ + K L L + + L ++N ++P N+
Sbjct: 69 AAVLMDSKLVVEQMSGRWKVKHPDLL--KLYVQAQALASQFRRINYE----WVPRARNTY 122
Query: 921 ADALSRQAL 929
AD L+ A+
Sbjct: 123 ADRLANDAM 131
>3otg_A CALG1; calicheamicin, TDP, structural genomics, PSI-2, protein STRU
initiative, center for eukaryotic structural genomics,
CESG fold; HET: TYD; 2.08A {Micromonospora echinospora}
PDB: 3oth_A*
Length = 412
Score = 30.0 bits (68), Expect = 3.7
Identities = 10/51 (19%), Positives = 13/51 (25%), Gaps = 12/51 (23%)
Query: 659 PIARRHRRFLCFLIPMDMSSFRPSLSSPG-VCPTIKLGRRLRERGVRCLVY 708
I RH R L + + G P + L R G
Sbjct: 15 HIEGRHMRVLFASLG-----------THGHTYPLLPLATAARAAGHEVTFA 54
>3oti_A CALG3; calicheamicin, TDP, structural genomics, PSI-2, protein STRU
initiative, center for eukaryotic structural genomics,
CESG fold; HET: TYD C0T; 1.60A {Micromonospora
echinospora} PDB: 3d0q_A* 3d0r_A*
Length = 398
Score = 29.8 bits (67), Expect = 5.2
Identities = 13/55 (23%), Positives = 18/55 (32%), Gaps = 12/55 (21%)
Query: 660 IARRHRRFLCFLIPMDMSSFRPSLSSPG-VCPTIKLGRRLRERGVRCLVYLDDFL 713
I RH R L P G + P I+L R G L+ + +
Sbjct: 16 IEGRHMRVLFVSSP-----------GIGHLFPLIQLAWGFRTAGHDVLIAVAEHA 59
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.322 0.136 0.419
Gapped
Lambda K H
0.267 0.0595 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 14,419,680
Number of extensions: 860317
Number of successful extensions: 1687
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1679
Number of HSP's successfully gapped: 25
Length of query: 960
Length of database: 6,701,793
Length adjustment: 103
Effective length of query: 857
Effective length of database: 3,825,930
Effective search space: 3278822010
Effective search space used: 3278822010
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 62 (28.0 bits)