RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy15121
(960 letters)
>d1hara_ e.8.1.2 (A:) HIV-1 reverse transcriptase {Human
immunodeficiency virus type 1 [TaxId: 11676]}
Length = 216
Score = 48.4 bits (115), Expect = 1e-06
Identities = 21/113 (18%), Positives = 39/113 (34%), Gaps = 9/113 (7%)
Query: 329 VTTKKFKLINHQKIPLFLQKNDYLATIDLSQAYCHIPIARRHRRFLCFLY-------KGT 381
T +++ P L+K + +D+ AY +P+ R++ F G
Sbjct: 83 RTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSVPLDEDFRKYTAFTIPSINNETPGI 142
Query: 382 VYQRTCLSFGLASAPQAFAQLSNWV--AVLLRERGVRCLVYLDDFLLASQDSV 432
YQ L G +P F + + Y+DD + S ++
Sbjct: 143 RYQYNVLPQGWKGSPAIFQSSMTKILAPFKAANPDIVIYQYMDDLYVGSDLAI 195
Score = 38.0 bits (88), Expect = 0.003
Identities = 22/129 (17%), Positives = 40/129 (31%), Gaps = 15/129 (11%)
Query: 607 DGTMRPVFNLKSLNSYVTTKKFKLINHQKIPLFLQKNDYLATIDLSQAYCHIPIARRHRR 666
D T + T +++ P L+K + +D+ AY +P+ R+
Sbjct: 67 DSTKWAKLVDFRELNKRTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSVPLDEDFRK 126
Query: 667 FLCFLIPMDMSSFRPSLSSPGVCPTI-------------KLGRRLRER--GVRCLVYLDD 711
+ F IP + V P K+ + + Y+DD
Sbjct: 127 YTAFTIPSINNETPGIRYQYNVLPQGWKGSPAIFQSSMTKILAPFKAANPDIVIYQYMDD 186
Query: 712 FLLASQDPI 720
+ S I
Sbjct: 187 LYVGSDLAI 195
>d1mu2a2 e.8.1.2 (A:3-429) HIV-1 reverse transcriptase {Human
immunodeficiency virus type 2 [TaxId: 11709]}
Length = 427
Score = 44.9 bits (106), Expect = 3e-05
Identities = 20/93 (21%), Positives = 30/93 (32%), Gaps = 8/93 (8%)
Query: 321 NLKSLNSYVTTKKFKLINHQKIPLFLQKNDYLATIDLSQAYCHIPIARRHR-------RF 373
+ + LN VT ++ P L K + +D+ AY IP+ R
Sbjct: 74 DFRELNK-VTQDFTEIQLGIPHPAGLAKKRRITVLDVGDAYFSIPLHEDFRPYTAFTLPS 132
Query: 374 LCFLYKGTVYQRTCLSFGLASAPQAFAQLSNWV 406
+ G Y L G +P F V
Sbjct: 133 VNNAEPGKRYIYKVLPQGWKGSPAIFQHTMRQV 165
Score = 39.9 bits (93), Expect = 0.001
Identities = 47/312 (15%), Positives = 97/312 (31%), Gaps = 45/312 (14%)
Query: 606 GDGTMRPVFNLKSLNSYVTTKKFKLINHQKIPLFLQKNDYLATIDLSQAYCHIPIARRHR 665
R + + + LN VT ++ P L K + +D+ AY IP+ R
Sbjct: 65 DKNKWRMLIDFRELNK-VTQDFTEIQLGIPHPAGLAKKRRITVLDVGDAYFSIPLHEDFR 123
Query: 666 RFLCFLIPMDMSSFRPSLSSPGVCP---------------TIKLGRRLRERGVRCLVYLD 710
+ F +P ++ V P + R + V + Y+D
Sbjct: 124 PYTAFTLPSVNNAEPGKRYIYKVLPQGWKGSPAIFQHTMRQVLEPFRKANKDVIIIQYMD 183
Query: 711 DFLLASQDPIVLKNQILQTL-QLLTYLGWQVNLKKSQIIPSHRVDYLGISWDTDLLQVRL 769
D L+AS + ++++ L +LL LG+ +K Q P ++G +++
Sbjct: 184 DILIASDRTDLEHDRVVLQLKELLNGLGFSTPDEKFQKDP--PYHWMGYELWPTKWKLQK 241
Query: 770 PVDKIPPLRDRLQTQALIELKWFYHN-LTGFTPLHPPVPRTFMSTDASDVGWGAMVGNVS 828
+ Q L+ + + G + R
Sbjct: 242 IQLPQKEIWTVNDIQKLVGVLNWAAQLYPGIK--TKHLCRLISGKMTLTEEV-------- 291
Query: 829 VQGVWTQAQRSWHINLKELFTVRAAISSNPSLVANHTVVLQSDNKTVIAYIRKQGGLRSH 888
WT+ + + +S + K + A ++K +
Sbjct: 292 ---QWTELAEAELEENRI------ILSQEQEG------HYYQEEKELEATVQKDQDNQWT 336
Query: 889 ALLAETKKLLLI 900
+ + +K+L +
Sbjct: 337 YKIHQEEKILKV 348
>d2zd1b1 e.8.1.2 (B:5-428) HIV-1 reverse transcriptase {Human
immunodeficiency virus type 1 [TaxId: 11676]}
Length = 424
Score = 44.6 bits (105), Expect = 4e-05
Identities = 22/117 (18%), Positives = 41/117 (35%), Gaps = 10/117 (8%)
Query: 321 NLKSLNSYVTTKKFKLINHQKIPLFLQKNDYLATIDLSQAYCHIPIARRHRRFLCFLYKG 380
+ + LN T +++ P L+K + +D+ AY +P+ R++ F
Sbjct: 72 DFRELNK-RTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSVPLDEDFRKYTAFTIPS 130
Query: 381 T-------VYQRTCLSFGLASAPQAFAQLSNWV--AVLLRERGVRCLVYLDDFLLAS 428
YQ L G +P F + + + Y+DD + S
Sbjct: 131 INNETPGIRYQYNVLPQGWKGSPAIFQSSMTKILEPFKKQNPDIVIYQYMDDLYVGS 187
Score = 35.7 bits (82), Expect = 0.024
Identities = 17/68 (25%), Positives = 31/68 (45%), Gaps = 2/68 (2%)
Query: 607 DGT-MRPVFNLKSLNSYVTTKKFKLINHQKIPLFLQKNDYLATIDLSQAYCHIPIARRHR 665
D T R + + + LN T +++ P L+K + +D+ AY +P+ R
Sbjct: 63 DSTKWRKLVDFRELNK-RTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSVPLDEDFR 121
Query: 666 RFLCFLIP 673
++ F IP
Sbjct: 122 KYTAFTIP 129
>d1ztwa1 e.8.1.2 (A:24-278) MMLV reverse transcriptase {Moloney
murine leukemia virus, MoMLV [TaxId: 11801]}
Length = 255
Score = 32.2 bits (72), Expect = 0.26
Identities = 20/53 (37%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
Query: 705 CLVYLDDFLLASQDPIVLKNQILQTLQLLTYLGWQVNLKKSQIIPSHRVDYLG 757
L Y+DD LLA+ + + LQ L LG++ + KK+QI +V YLG
Sbjct: 196 LLQYVDDLLLAATSELDCQQGTRALLQTLGNLGYRASAKKAQICQ-KQVKYLG 247
>d1jl1a_ c.55.3.1 (A:) RNase H (RNase HI) {Escherichia coli [TaxId:
562]}
Length = 152
Score = 30.0 bits (66), Expect = 0.76
Identities = 22/137 (16%), Positives = 46/137 (33%), Gaps = 15/137 (10%)
Query: 73 GWGAMVGNVSVQGVWTQAQRSWHINLKELFTVRAAISSNP-----SLVANHTVVLQSDNK 127
G+GA++ + ++ N EL A+ + L + V Q +
Sbjct: 19 GYGAILRYRGREKTFSAGYTRTTNNRMELMAAIVALEALKEHAEVILSTDSQYVRQGITQ 78
Query: 128 TVIAYIRKQ-----GGLRSHALLAETKKLLLIMSKLNIHIVPYFIPGKCNSLADALSRQA 182
+ + ++ + L + L ++ V N AD L+R A
Sbjct: 79 WIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQHQIKWEWVKGHAGHPENERADELARAA 138
Query: 183 LIPDWHLLPSLTESVFQ 199
+ P+L ++ +Q
Sbjct: 139 A-----MNPTLEDTGYQ 150
Score = 30.0 bits (66), Expect = 0.76
Identities = 22/137 (16%), Positives = 46/137 (33%), Gaps = 15/137 (10%)
Query: 819 GWGAMVGNVSVQGVWTQAQRSWHINLKELFTVRAAISSNP-----SLVANHTVVLQSDNK 873
G+GA++ + ++ N EL A+ + L + V Q +
Sbjct: 19 GYGAILRYRGREKTFSAGYTRTTNNRMELMAAIVALEALKEHAEVILSTDSQYVRQGITQ 78
Query: 874 TVIAYIRKQ-----GGLRSHALLAETKKLLLIMSKLNIHIVPYFIPGKCNSLADALSRQA 928
+ + ++ + L + L ++ V N AD L+R A
Sbjct: 79 WIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQHQIKWEWVKGHAGHPENERADELARAA 138
Query: 929 LIPDWHLLPSLTESVFQ 945
+ P+L ++ +Q
Sbjct: 139 A-----MNPTLEDTGYQ 150
>d2c12a2 e.6.1.1 (A:2-260) Nitroalkane oxidase {Fusarium oxysporum
[TaxId: 5507]}
Length = 259
Score = 28.2 bits (61), Expect = 4.0
Identities = 3/70 (4%), Positives = 13/70 (18%), Gaps = 11/70 (15%)
Query: 646 LATIDLSQAYCHIPIARRHRRFLCFLIPMDMSSFRPSLSSPGVCPTIKLGRRLRERGVR- 704
+ + + P + L+ + + ++ G
Sbjct: 186 VCRVSDDPSKPQDPNVDPATQIAVLLVTRETIAN-------NKKDAYQILGEPELAGHIT 238
Query: 705 ---CLVYLDD 711
+
Sbjct: 239 TSGPHTRFTE 248
>d1xdya_ d.176.1.1 (A:) Bacterial sulfite oxidase YedY {Escherichia
coli [TaxId: 562]}
Length = 269
Score = 27.7 bits (61), Expect = 5.8
Identities = 15/86 (17%), Positives = 28/86 (32%), Gaps = 10/86 (11%)
Query: 769 LPVDKIPPLRDRLQTQALIELKWFYHN---LTGFTPLHPPVPRTFMSTDASDVGWGAMVG 825
LP P+R ++ K+ + + P T+ + G+ A V
Sbjct: 168 LPPQNGAPVR------LIVPWKYGFKGIKSIVSIKLTRERPPTTWNLAAPDEYGFYANVN 221
Query: 826 NVSVQGVWTQAQRSWHINLKELFTVR 851
W+QA + I + V+
Sbjct: 222 PYVDHPRWSQATERF-IGSGGILDVQ 246
>d2py6a1 c.66.1.56 (A:14-408) Methyltransferase FkbM
{Methylobacillus flagellatus [TaxId: 405]}
Length = 395
Score = 27.7 bits (61), Expect = 6.8
Identities = 6/27 (22%), Positives = 11/27 (40%)
Query: 406 VAVLLRERGVRCLVYLDDFLLASQDSV 432
+ + ER + +DDF S +
Sbjct: 53 LMNVRHERPCEVIAAVDDFRYHSGELY 79
>d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation
factor DnaA {Aquifex aeolicus [TaxId: 63363]}
Length = 213
Score = 27.1 bits (59), Expect = 8.6
Identities = 12/73 (16%), Positives = 24/73 (32%), Gaps = 15/73 (20%)
Query: 515 FIPGKCNSLADALSRQALIPDWHLLPSLTESVFPRWGSRVVPLYVTRNPQDSKAAFIDAF 574
FI G+ N LA + ++ + GS P+++ + K + A
Sbjct: 12 FIVGEGNRLAYEVVKE--ALEN-------------LGSLYNPIFIYGSVGTGKTHLLQAA 56
Query: 575 SRKWDFKLAWVFP 587
+ + V
Sbjct: 57 GNEAKKRGYRVIY 69
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.322 0.136 0.419
Gapped
Lambda K H
0.267 0.0566 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 3,506,074
Number of extensions: 163225
Number of successful extensions: 351
Number of sequences better than 10.0: 1
Number of HSP's gapped: 348
Number of HSP's successfully gapped: 14
Length of query: 960
Length of database: 2,407,596
Length adjustment: 94
Effective length of query: 866
Effective length of database: 1,116,976
Effective search space: 967301216
Effective search space used: 967301216
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 57 (26.1 bits)