BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy15122
(927 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3EG5|B Chain B, Crystal Structure Of Mdia1-Tsh Gbd-Fh3 In Complex With
Cdc42-Gmppnp
pdb|3EG5|D Chain D, Crystal Structure Of Mdia1-Tsh Gbd-Fh3 In Complex With
Cdc42-Gmppnp
Length = 383
Score = 288 bits (738), Expect = 8e-78, Method: Compositional matrix adjust.
Identities = 156/410 (38%), Positives = 245/410 (59%), Gaps = 36/410 (8%)
Query: 75 LEKLNPEQLNQKFEDMLNDMNLSDEKKEPLRRQPLANKKKMLLMHYKGTVTSYENKSKFD 134
L+ ++ EQ+ FE ML DMNL++EK++PLR + + K++M+ + + K
Sbjct: 7 LQDISDEQVLVLFEQMLVDMNLNEEKQQPLREKDIVIKREMVSQYLHTSKAGMNQKESSR 66
Query: 135 KPIEYIQYLSQPELSVNKMYSCIESLRIALTNHPLSWVNEFVLQDNKNFRKYPIAFLYPR 194
+ YIQ L + L + SC+ESLR++LT+HP+SWV F + + + L
Sbjct: 67 SAMMYIQEL-RSGLRDMHLLSCLESLRVSLTSHPVSWVQTFGAEGLASL----LDILKRL 121
Query: 195 FPSRSRNDSRYD-RVQYECVRCIRAIMNNTVGLKQMFGQKEALTIVARSLDPNKPTVMLE 253
+ YD R Q+E +RC++A MNN G+K M +E + ++ R++DP P +M++
Sbjct: 122 HDEKEETSGNYDSRNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAMDPAVPNMMID 181
Query: 254 AVKVLAAVCLIP--PDGHDKVIKAITMSGELKGKERFQPVVQGLMVKGNNEALRTACLQL 311
A K+L+A+C++P D +++V++A+T E+ ERFQP++ GL G + AL+ CLQL
Sbjct: 182 AAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLK-SGTSIALKVGCLQL 240
Query: 312 INAIVATPDDLEFRLHLRNEIMRVGLYDLLDALEKDASEDVSVQLKVFIEHKEEDYYEFI 371
INA++ ++L+FR+H+R+E+MR+GL+ +L L + +ED+ VQL VF E +ED+++
Sbjct: 241 INALITPAEELDFRVHIRSELMRLGLHQVLQELREIENEDMKVQLCVFDEQGDEDFFDLK 300
Query: 372 QRFDNVRMEIDDVNDCFETVRNMVMDSACEPYLLSILQHLLFIRDDQNMVMDSACEPYLL 431
R D++RME+DD + F+ + N V DS EP+ LSILQHLL +R+D
Sbjct: 301 GRLDDIRMEMDDFGEVFQIILNTVKDSKAEPHFLSILQHLLLVRNDYE------------ 348
Query: 432 SILQHLLFIRDDQYVRLAYYKLLEECVSQIVLHRGGCDPDFRSSRRFQLD 481
R YYKL+EECVSQIVLH+ G DPDF+ R Q+D
Sbjct: 349 --------------ARPQYYKLIEECVSQIVLHKNGTDPDFK-CRHLQID 383
Score = 39.7 bits (91), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 45/77 (58%), Gaps = 1/77 (1%)
Query: 14 LEKLNPEQLNQKFEDMLNDMNLSDEKKEPLRRQPLANKKKMLLMHYKGTVTSYENKKQEN 73
L+ ++ EQ+ FE ML DMNL++EK++PLR + + K++M + Y T + N+K+ +
Sbjct: 7 LQDISDEQVLVLFEQMLVDMNLNEEKQQPLREKDIVIKREM-VSQYLHTSKAGMNQKESS 65
Query: 74 MLEKLNPEQLNQKFEDM 90
+ ++L DM
Sbjct: 66 RSAMMYIQELRSGLRDM 82
>pdb|1Z2C|B Chain B, Crystal Structure Of Mdia1 Gbd-Fh3 In Complex With Rhoc-
Gmppnp
pdb|1Z2C|D Chain D, Crystal Structure Of Mdia1 Gbd-Fh3 In Complex With Rhoc-
Gmppnp
Length = 383
Score = 285 bits (729), Expect = 8e-77, Method: Compositional matrix adjust.
Identities = 155/410 (37%), Positives = 244/410 (59%), Gaps = 36/410 (8%)
Query: 75 LEKLNPEQLNQKFEDMLNDMNLSDEKKEPLRRQPLANKKKMLLMHYKGTVTSYENKSKFD 134
L+ ++ EQ+ FE ML DMNL++EK++PLR + + K++M+ + + K
Sbjct: 7 LQDISDEQVLVLFEQMLVDMNLNEEKQQPLREKDIVIKREMVSQYLHTSKAGMNQKESSR 66
Query: 135 KPIEYIQYLSQPELSVNKMYSCIESLRIALTNHPLSWVNEFVLQDNKNFRKYPIAFLYPR 194
+ YIQ L + L + SC+ESLR++L N+P+SWV F + + + L
Sbjct: 67 SAMMYIQEL-RSGLRDMHLLSCLESLRVSLNNNPVSWVQTFGAEGLASL----LDILKRL 121
Query: 195 FPSRSRNDSRYD-RVQYECVRCIRAIMNNTVGLKQMFGQKEALTIVARSLDPNKPTVMLE 253
+ YD R Q+E +RC++A MNN G+K M +E + ++ R++DP P +M++
Sbjct: 122 HDEKEETSGNYDSRNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAMDPAVPNMMID 181
Query: 254 AVKVLAAVCLIP--PDGHDKVIKAITMSGELKGKERFQPVVQGLMVKGNNEALRTACLQL 311
A K+L+A+C++P D +++V++A+T E+ ERFQP++ GL G + AL+ CLQL
Sbjct: 182 AAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLK-SGTSIALKVGCLQL 240
Query: 312 INAIVATPDDLEFRLHLRNEIMRVGLYDLLDALEKDASEDVSVQLKVFIEHKEEDYYEFI 371
INA++ ++L+FR+H+R+E+MR+GL+ +L L + +ED+ VQL VF E +ED+++
Sbjct: 241 INALITPAEELDFRVHIRSELMRLGLHQVLQELREIENEDMKVQLCVFDEQGDEDFFDLK 300
Query: 372 QRFDNVRMEIDDVNDCFETVRNMVMDSACEPYLLSILQHLLFIRDDQNMVMDSACEPYLL 431
R D++RME+DD + F+ + N V DS EP+ LSILQHLL +R+D
Sbjct: 301 GRLDDIRMEMDDFGEVFQIILNTVKDSKAEPHFLSILQHLLLVRNDYE------------ 348
Query: 432 SILQHLLFIRDDQYVRLAYYKLLEECVSQIVLHRGGCDPDFRSSRRFQLD 481
R YYKL+EECVSQIVLH+ G DPDF+ R Q+D
Sbjct: 349 --------------ARPQYYKLIEECVSQIVLHKNGTDPDFK-CRHLQID 383
Score = 39.3 bits (90), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 45/77 (58%), Gaps = 1/77 (1%)
Query: 14 LEKLNPEQLNQKFEDMLNDMNLSDEKKEPLRRQPLANKKKMLLMHYKGTVTSYENKKQEN 73
L+ ++ EQ+ FE ML DMNL++EK++PLR + + K++M + Y T + N+K+ +
Sbjct: 7 LQDISDEQVLVLFEQMLVDMNLNEEKQQPLREKDIVIKREM-VSQYLHTSKAGMNQKESS 65
Query: 74 MLEKLNPEQLNQKFEDM 90
+ ++L DM
Sbjct: 66 RSAMMYIQELRSGLRDM 82
>pdb|2BNX|A Chain A, Crystal Structure Of The Dimeric Regulatory Domain Of
Mouse Diaphaneous-Related Formin (Drf), Mdia1
pdb|2BNX|B Chain B, Crystal Structure Of The Dimeric Regulatory Domain Of
Mouse Diaphaneous-Related Formin (Drf), Mdia1
Length = 386
Score = 274 bits (701), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 151/410 (36%), Positives = 242/410 (59%), Gaps = 37/410 (9%)
Query: 139 YIQYLSQPELSVNKMYSCIESLRIALTNHPLSWVNEFVLQDNKNFRKYPIAFLYPRFPSR 198
YIQ L + L + SC+ESLR++L N+P+SWV F + + + L +
Sbjct: 9 YIQEL-RSGLRDMHLLSCLESLRVSLNNNPVSWVQTFGAEGLASL----LDILKRLHDEK 63
Query: 199 SRNDSRYD-RVQYECVRCIRAIMNNTVGLKQMFGQKEALTIVARSLDPNKPTVMLEAVKV 257
YD R Q+E +RC++A MNN G+K M +E + ++ R++DP P +M++A K+
Sbjct: 64 EETSGNYDSRNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKL 123
Query: 258 LAAVCLIP--PDGHDKVIKAITMSGELKGKERFQPVVQGLMVKGNNEALRTACLQLINAI 315
L+A+C++P D +++V++A+T E+ ERFQP++ GL G + AL+ CLQLINA+
Sbjct: 124 LSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLK-SGTSIALKVGCLQLINAL 182
Query: 316 VATPDDLEFRLHLRNEIMRVGLYDLLDALEKDASEDVSVQLKVFIEHKEEDYYEFIQRFD 375
+ ++L+FR+H+R+E+MR+GL+ +L L + +ED+ VQL VF E +ED+++ R D
Sbjct: 183 ITPAEELDFRVHIRSELMRLGLHQVLQELREIENEDMKVQLCVFDEQGDEDFFDLKGRLD 242
Query: 376 NVRMEIDDVNDCFETVRNMVMDSACEPYLLSILQHLLFIRDDQNMVMDSACEPYLLSILQ 435
++RME+DD + F+ + N V DS EP+ LSILQHLL +R+D
Sbjct: 243 DIRMEMDDFGEVFQIILNTVKDSKAEPHFLSILQHLLLVRNDYE---------------- 286
Query: 436 HLLFIRDDQYVRLAYYKLLEECVSQIVLHRGGCDPDFRSSRRFQLDVQPLVEHLAEKSKT 495
R YYKL+EECVSQIVLH+ G DPDF+ R Q+D++ LV+ + +K+K
Sbjct: 287 ----------ARPQYYKLIEECVSQIVLHKNGTDPDFK-CRHLQIDIERLVDQMIDKTKV 335
Query: 496 EE-DRRVEDLSAKLEEAIMLRQEAEAKLVQAQKTLEDLSSGRPVEKNRLD 544
E+ + + +L KL+ + R E + ++ + + E EK+ LD
Sbjct: 336 EKSEAKATELEKKLDSELTARHELQVEMKKMENDFEQKLQDLQGEKDALD 385
>pdb|3OBV|A Chain A, Autoinhibited Formin Mdia1 Structure
pdb|3OBV|B Chain B, Autoinhibited Formin Mdia1 Structure
pdb|3OBV|C Chain C, Autoinhibited Formin Mdia1 Structure
pdb|3OBV|D Chain D, Autoinhibited Formin Mdia1 Structure
Length = 327
Score = 259 bits (662), Expect = 5e-69, Method: Compositional matrix adjust.
Identities = 138/352 (39%), Positives = 214/352 (60%), Gaps = 36/352 (10%)
Query: 139 YIQYLSQPELSVNKMYSCIESLRIALTNHPLSWVNEFVLQDNKNFRKYPIAFLYPRFPSR 198
YIQ L + L + SC+ESLR++L N+P+SWV F + + + L +
Sbjct: 9 YIQEL-RSGLRDMHLLSCLESLRVSLNNNPVSWVQTFGAEGLASL----LDILKRLHDEK 63
Query: 199 SRNDSRYD-RVQYECVRCIRAIMNNTVGLKQMFGQKEALTIVARSLDPNKPTVMLEAVKV 257
YD R Q+E +RC++A MNN G+K M +E + ++ R++DP P +M++A K+
Sbjct: 64 EETSGNYDSRNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKL 123
Query: 258 LAAVCLIP--PDGHDKVIKAITMSGELKGKERFQPVVQGLMVKGNNEALRTACLQLINAI 315
L+A+C++P D +++V++A+T E+ ERFQP++ GL G + AL+ CLQLINA+
Sbjct: 124 LSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLK-SGTSIALKVGCLQLINAL 182
Query: 316 VATPDDLEFRLHLRNEIMRVGLYDLLDALEKDASEDVSVQLKVFIEHKEEDYYEFIQRFD 375
+ ++L+FR+H+R+E+MR+GL+ +L L + +ED+ VQL VF E +ED+++ R D
Sbjct: 183 ITPAEELDFRVHIRSELMRLGLHQVLQELREIENEDMKVQLCVFDEQGDEDFFDLKGRLD 242
Query: 376 NVRMEIDDVNDCFETVRNMVMDSACEPYLLSILQHLLFIRDDQNMVMDSACEPYLLSILQ 435
++RME+DD + F+ + N V DS EP+ LSILQHLL +R+D
Sbjct: 243 DIRMEMDDFGEVFQIILNTVKDSKAEPHFLSILQHLLLVRNDYE---------------- 286
Query: 436 HLLFIRDDQYVRLAYYKLLEECVSQIVLHRGGCDPDFRSSRRFQLDVQPLVE 487
R YYKL+EECVSQIVLH+ G DPDF+ R Q+D++ LV+
Sbjct: 287 ----------ARPQYYKLIEECVSQIVLHKNGTDPDFK-CRHLQIDIERLVD 327
>pdb|3O4X|A Chain A, Crystal Structure Of Complex Between Amino And Carboxy
Terminal Fragments Of Mdia1
pdb|3O4X|B Chain B, Crystal Structure Of Complex Between Amino And Carboxy
Terminal Fragments Of Mdia1
pdb|3O4X|C Chain C, Crystal Structure Of Complex Between Amino And Carboxy
Terminal Fragments Of Mdia1
pdb|3O4X|D Chain D, Crystal Structure Of Complex Between Amino And Carboxy
Terminal Fragments Of Mdia1
Length = 330
Score = 259 bits (662), Expect = 5e-69, Method: Compositional matrix adjust.
Identities = 138/352 (39%), Positives = 214/352 (60%), Gaps = 36/352 (10%)
Query: 139 YIQYLSQPELSVNKMYSCIESLRIALTNHPLSWVNEFVLQDNKNFRKYPIAFLYPRFPSR 198
YIQ L + L + SC+ESLR++L N+P+SWV F + + + L +
Sbjct: 11 YIQEL-RSGLRDMHLLSCLESLRVSLNNNPVSWVQTFGAEGLASL----LDILKRLHDEK 65
Query: 199 SRNDSRYD-RVQYECVRCIRAIMNNTVGLKQMFGQKEALTIVARSLDPNKPTVMLEAVKV 257
YD R Q+E +RC++A MNN G+K M +E + ++ R++DP P +M++A K+
Sbjct: 66 EETSGNYDSRNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKL 125
Query: 258 LAAVCLIP--PDGHDKVIKAITMSGELKGKERFQPVVQGLMVKGNNEALRTACLQLINAI 315
L+A+C++P D +++V++A+T E+ ERFQP++ GL G + AL+ CLQLINA+
Sbjct: 126 LSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLK-SGTSIALKVGCLQLINAL 184
Query: 316 VATPDDLEFRLHLRNEIMRVGLYDLLDALEKDASEDVSVQLKVFIEHKEEDYYEFIQRFD 375
+ ++L+FR+H+R+E+MR+GL+ +L L + +ED+ VQL VF E +ED+++ R D
Sbjct: 185 ITPAEELDFRVHIRSELMRLGLHQVLQELREIENEDMKVQLCVFDEQGDEDFFDLKGRLD 244
Query: 376 NVRMEIDDVNDCFETVRNMVMDSACEPYLLSILQHLLFIRDDQNMVMDSACEPYLLSILQ 435
++RME+DD + F+ + N V DS EP+ LSILQHLL +R+D
Sbjct: 245 DIRMEMDDFGEVFQIILNTVKDSKAEPHFLSILQHLLLVRNDYE---------------- 288
Query: 436 HLLFIRDDQYVRLAYYKLLEECVSQIVLHRGGCDPDFRSSRRFQLDVQPLVE 487
R YYKL+EECVSQIVLH+ G DPDF+ R Q+D++ LV+
Sbjct: 289 ----------ARPQYYKLIEECVSQIVLHKNGTDPDFK-CRHLQIDIERLVD 329
>pdb|2BAP|B Chain B, Crystal Structure Of The N-Terminal Mdia1 Armadillo Repeat
Region And Dimerisation Domain In Complex With The Mdia1
Autoregulatory Domain (Dad)
pdb|2BAP|A Chain A, Crystal Structure Of The N-Terminal Mdia1 Armadillo Repeat
Region And Dimerisation Domain In Complex With The Mdia1
Autoregulatory Domain (Dad)
Length = 317
Score = 254 bits (650), Expect = 1e-67, Method: Compositional matrix adjust.
Identities = 136/346 (39%), Positives = 209/346 (60%), Gaps = 36/346 (10%)
Query: 139 YIQYLSQPELSVNKMYSCIESLRIALTNHPLSWVNEFVLQDNKNFRKYPIAFLYPRFPSR 198
YIQ L + L + SC+ESLR++L N+P+SWV F + + + L +
Sbjct: 5 YIQEL-RSGLRDMHLLSCLESLRVSLNNNPVSWVQTFGAEGLASL----LDILKRLHDEK 59
Query: 199 SRNDSRYD-RVQYECVRCIRAIMNNTVGLKQMFGQKEALTIVARSLDPNKPTVMLEAVKV 257
YD R Q+E +RC++A MNN G+K M +E + ++ R++DP P +M++A K+
Sbjct: 60 EETSGNYDSRNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKL 119
Query: 258 LAAVCLIP--PDGHDKVIKAITMSGELKGKERFQPVVQGLMVKGNNEALRTACLQLINAI 315
L+A+C++P D +++V++A+T E+ ERFQP++ GL G + AL+ CLQLINA+
Sbjct: 120 LSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLK-SGTSIALKVGCLQLINAL 178
Query: 316 VATPDDLEFRLHLRNEIMRVGLYDLLDALEKDASEDVSVQLKVFIEHKEEDYYEFIQRFD 375
+ ++L+FR+H+R+E+MR+GL+ +L L + +ED+ VQL VF E +ED+++ R D
Sbjct: 179 ITPAEELDFRVHIRSELMRLGLHQVLQELREIENEDMKVQLCVFDEQGDEDFFDLKGRLD 238
Query: 376 NVRMEIDDVNDCFETVRNMVMDSACEPYLLSILQHLLFIRDDQNMVMDSACEPYLLSILQ 435
++RME+DD + F+ + N V DS EP+ LSILQHLL +R+D
Sbjct: 239 DIRMEMDDFGEVFQIILNTVKDSKAEPHFLSILQHLLLVRNDYE---------------- 282
Query: 436 HLLFIRDDQYVRLAYYKLLEECVSQIVLHRGGCDPDFRSSRRFQLD 481
R YYKL+EECVSQIVLH+ G DPDF+ R Q+D
Sbjct: 283 ----------ARPQYYKLIEECVSQIVLHKNGTDPDFK-CRHLQID 317
>pdb|3OBV|E Chain E, Autoinhibited Formin Mdia1 Structure
pdb|3OBV|F Chain F, Autoinhibited Formin Mdia1 Structure
pdb|3OBV|G Chain G, Autoinhibited Formin Mdia1 Structure
pdb|3OBV|H Chain H, Autoinhibited Formin Mdia1 Structure
Length = 457
Score = 204 bits (520), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 109/255 (42%), Positives = 149/255 (58%), Gaps = 2/255 (0%)
Query: 601 IINGKQACEEVKQSXXXXXXXXXXXXMGNYMNSGSRNGGAFGFEINFLTKLSSTKDIENK 660
I++ ACEE+++S +GNYMN+GSRN GAFGF I+FL KL TK + K
Sbjct: 188 IVSVTAACEELRKSENFSSLLELTLLVGNYMNAGSRNAGAFGFNISFLCKLRDTKSADQK 247
Query: 661 TTLLHYLVDTIEQKFPECLKFGDELLHVDRAARVSTDVIQNSIRQMENNIKNLETDIQNC 720
TLLH+L + E PE LKF DEL HV++A+RVS + +Q S+ QM+ I ++E D+QN
Sbjct: 248 MTLLHFLAELCENDHPEVLKFPDELAHVEKASRVSAENLQKSLDQMKKQIADVERDVQNF 307
Query: 721 KQAPVANENDKFLEIMEPFAKEVRQKITLLSNMSKNMMTLYGDLAEFYTFDKNIYTLEEF 780
A +E DKF+E M F K+ +++ L M NM TLY +L +++ FD ++EEF
Sbjct: 308 PAA--TDEKDKFVEKMTSFVKDAQEQYNKLRMMHSNMETLYKELGDYFVFDPKKLSVEEF 365
Query: 781 FTDIKTFKDSFYQAWQENIKLREAEEKSIXXXXXXXXXXXXXXXXXXXXXXLIDMTTDQT 840
F D+ F++ F QA +EN K RE EEK LIDM +
Sbjct: 366 FMDLHNFRNMFLQAVKENQKRRETEEKMRRAKLAKEKAEKERLEKQQKREQLIDMNAEGD 425
Query: 841 QQGVMDSLLEALQTG 855
+ GVMDSLLEALQ+G
Sbjct: 426 ETGVMDSLLEALQSG 440
>pdb|3O4X|E Chain E, Crystal Structure Of Complex Between Amino And Carboxy
Terminal Fragments Of Mdia1
pdb|3O4X|H Chain H, Crystal Structure Of Complex Between Amino And Carboxy
Terminal Fragments Of Mdia1
pdb|3O4X|G Chain G, Crystal Structure Of Complex Between Amino And Carboxy
Terminal Fragments Of Mdia1
pdb|3O4X|F Chain F, Crystal Structure Of Complex Between Amino And Carboxy
Terminal Fragments Of Mdia1
Length = 467
Score = 204 bits (518), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 109/255 (42%), Positives = 149/255 (58%), Gaps = 2/255 (0%)
Query: 601 IINGKQACEEVKQSXXXXXXXXXXXXMGNYMNSGSRNGGAFGFEINFLTKLSSTKDIENK 660
I++ ACEE+++S +GNYMN+GSRN GAFGF I+FL KL TK + K
Sbjct: 207 IVSVTAACEELRKSENFSSLLELTLLVGNYMNAGSRNAGAFGFNISFLCKLRDTKSADQK 266
Query: 661 TTLLHYLVDTIEQKFPECLKFGDELLHVDRAARVSTDVIQNSIRQMENNIKNLETDIQNC 720
TLLH+L + E PE LKF DEL HV++A+RVS + +Q S+ QM+ I ++E D+QN
Sbjct: 267 MTLLHFLAELCENDHPEVLKFPDELAHVEKASRVSAENLQKSLDQMKKQIADVERDVQNF 326
Query: 721 KQAPVANENDKFLEIMEPFAKEVRQKITLLSNMSKNMMTLYGDLAEFYTFDKNIYTLEEF 780
A +E DKF+E M F K+ +++ L M NM TLY +L +++ FD ++EEF
Sbjct: 327 PAA--TDEKDKFVEKMTSFVKDAQEQYNKLRMMHSNMETLYKELGDYFVFDPKKLSVEEF 384
Query: 781 FTDIKTFKDSFYQAWQENIKLREAEEKSIXXXXXXXXXXXXXXXXXXXXXXLIDMTTDQT 840
F D+ F++ F QA +EN K RE EEK LIDM +
Sbjct: 385 FMDLHNFRNMFLQAVKENQKRRETEEKMRRAKLAKEKAEKERLEKQQKREQLIDMNAEGD 444
Query: 841 QQGVMDSLLEALQTG 855
+ GVMDSLLEALQ+G
Sbjct: 445 ETGVMDSLLEALQSG 459
>pdb|1V9D|A Chain A, Crystal Structure Of The Core Fh2 Domain Of Mouse Mdia1
pdb|1V9D|B Chain B, Crystal Structure Of The Core Fh2 Domain Of Mouse Mdia1
pdb|1V9D|C Chain C, Crystal Structure Of The Core Fh2 Domain Of Mouse Mdia1
pdb|1V9D|D Chain D, Crystal Structure Of The Core Fh2 Domain Of Mouse Mdia1
Length = 340
Score = 182 bits (462), Expect = 8e-46, Method: Compositional matrix adjust.
Identities = 93/207 (44%), Positives = 130/207 (62%), Gaps = 2/207 (0%)
Query: 601 IINGKQACEEVKQSXXXXXXXXXXXXMGNYMNSGSRNGGAFGFEINFLTKLSSTKDIENK 660
I++ ACEE+++S +GNYMN+GSRN GAFGF I+FL KL TK + K
Sbjct: 117 IVSVTAACEELRKSENFSSLLELTLLVGNYMNAGSRNAGAFGFNISFLCKLRDTKSADQK 176
Query: 661 TTLLHYLVDTIEQKFPECLKFGDELLHVDRAARVSTDVIQNSIRQMENNIKNLETDIQNC 720
TLLH+L + E PE LKF DEL HV++A+RVS + +Q S+ QM+ I ++E D+QN
Sbjct: 177 MTLLHFLAELCENDHPEVLKFPDELAHVEKASRVSAENLQKSLDQMKKQIADVERDVQNF 236
Query: 721 KQAPVANENDKFLEIMEPFAKEVRQKITLLSNMSKNMMTLYGDLAEFYTFDKNIYTLEEF 780
A +E DKF+E M F K+ +++ L M NM TLY +L +++ FD ++EEF
Sbjct: 237 PAA--TDEKDKFVEKMTSFVKDAQEQYNKLRMMHSNMETLYKELGDYFVFDPKKLSVEEF 294
Query: 781 FTDIKTFKDSFYQAWQENIKLREAEEK 807
F D+ F++ F QA +EN K RE EEK
Sbjct: 295 FMDLHNFRNMFLQAVKENQKRRETEEK 321
>pdb|2F31|A Chain A, Crystal Structure Of The Autoinhibitory Switch In Formin
Mdia1; The DidDAD COMPLEX
Length = 233
Score = 172 bits (436), Expect = 7e-43, Method: Compositional matrix adjust.
Identities = 89/235 (37%), Positives = 149/235 (63%), Gaps = 9/235 (3%)
Query: 139 YIQYLSQPELSVNKMYSCIESLRIALTNHPLSWVNEFVLQDNKNFRKYPIAFLYPRFPSR 198
YIQ L + L + SC+ESLR++L N+P+SWV F + + + L +
Sbjct: 5 YIQEL-RSGLRDMHLLSCLESLRVSLNNNPVSWVQTFGAEGLASL----LDILKRLHDEK 59
Query: 199 SRNDSRYD-RVQYECVRCIRAIMNNTVGLKQMFGQKEALTIVARSLDPNKPTVMLEAVKV 257
YD R Q+E +RC++A MNN G+K M +E + ++ R++DP P +M++A K+
Sbjct: 60 EETSGNYDSRNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKL 119
Query: 258 LAAVCLIP--PDGHDKVIKAITMSGELKGKERFQPVVQGLMVKGNNEALRTACLQLINAI 315
L+A+C++P D +++V++A+T E+ ERFQP++ GL G + AL+ CLQLINA+
Sbjct: 120 LSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLK-SGTSIALKVGCLQLINAL 178
Query: 316 VATPDDLEFRLHLRNEIMRVGLYDLLDALEKDASEDVSVQLKVFIEHKEEDYYEF 370
+ ++L+FR+H+R+E+MR+GL+ +L L + +ED+ VQL VF E +ED+++
Sbjct: 179 ITPAEELDFRVHIRSELMRLGLHQVLQELREIENEDMKVQLCVFDEQGDEDFFDL 233
>pdb|2Z6E|A Chain A, Crystal Structure Of Human Daam1 Fh2
pdb|2Z6E|B Chain B, Crystal Structure Of Human Daam1 Fh2
pdb|2Z6E|C Chain C, Crystal Structure Of Human Daam1 Fh2
pdb|2Z6E|D Chain D, Crystal Structure Of Human Daam1 Fh2
Length = 419
Score = 84.7 bits (208), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 55/195 (28%), Positives = 93/195 (47%), Gaps = 3/195 (1%)
Query: 605 KQACEEVKQSXXXXXXXXXXXXMGNYMNSGSRNGGAFGFEINFLTKLSSTKD-IENKTTL 663
+ EEV +S GNYMN G R G A+GF+I+ L K++ TK I+ TL
Sbjct: 205 RSGSEEVFRSGALKQLLEVVLAFGNYMNKGQR-GNAYGFKISSLNKIADTKSSIDKNITL 263
Query: 664 LHYLVDTIEQKFPECLKFGDELLHVDRAARVSTDVIQNSIRQMENNIKNLETDIQNCKQA 723
LHYL+ +E K+P L +EL + +AA+V+ + I + + +K +ET+++ K
Sbjct: 264 LHYLITIVENKYPSVLNLNEELRDIPQAAKVNMTELDKEISTLRSGLKAVETELEYQKSQ 323
Query: 724 PVANENDKFLEIMEPFAKEVRQKITLLSNMSKNMMTLYGDLAEFYTFDKNIYTLEEFFTD 783
P DKF+ ++ F + + ++ L+ + + + +EFF
Sbjct: 324 P-PQPGDKFVSVVSQFITVASFSFSDVEDLLAEAKDLFTKAVKHFGEEAGKIQPDEFFGI 382
Query: 784 IKTFKDSFYQAWQEN 798
F + +A QEN
Sbjct: 383 FDQFLQAVSEAKQEN 397
>pdb|2J1D|G Chain G, Crystallization Of Hdaam1 C-Terminal Fragment
Length = 483
Score = 84.7 bits (208), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 55/195 (28%), Positives = 93/195 (47%), Gaps = 3/195 (1%)
Query: 605 KQACEEVKQSXXXXXXXXXXXXMGNYMNSGSRNGGAFGFEINFLTKLSSTKD-IENKTTL 663
+ EEV +S GNYMN G R G A+GF+I+ L K++ TK I+ TL
Sbjct: 203 RSGSEEVFRSGALKQLLEVVLAFGNYMNKGQR-GNAYGFKISSLNKIADTKSSIDKNITL 261
Query: 664 LHYLVDTIEQKFPECLKFGDELLHVDRAARVSTDVIQNSIRQMENNIKNLETDIQNCKQA 723
LHYL+ +E K+P L +EL + +AA+V+ + I + + +K +ET+++ K
Sbjct: 262 LHYLITIVENKYPSVLNLNEELRDIPQAAKVNMTELDKEISTLRSGLKAVETELEYQKSQ 321
Query: 724 PVANENDKFLEIMEPFAKEVRQKITLLSNMSKNMMTLYGDLAEFYTFDKNIYTLEEFFTD 783
P DKF+ ++ F + + ++ L+ + + + +EFF
Sbjct: 322 P-PQPGDKFVSVVSQFITVASFSFSDVEDLLAEAKDLFTKAVKHFGEEAGKIQPDEFFGI 380
Query: 784 IKTFKDSFYQAWQEN 798
F + +A QEN
Sbjct: 381 FDQFLQAVSEAKQEN 395
>pdb|4EAH|A Chain A, Crystal Structure Of The Formin Homology 2 Domain Of Fmnl3
Bound To Actin
pdb|4EAH|E Chain E, Crystal Structure Of The Formin Homology 2 Domain Of Fmnl3
Bound To Actin
pdb|4EAH|C Chain C, Crystal Structure Of The Formin Homology 2 Domain Of Fmnl3
Bound To Actin
pdb|4EAH|B Chain B, Crystal Structure Of The Formin Homology 2 Domain Of Fmnl3
Bound To Actin
Length = 402
Score = 66.2 bits (160), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 35/100 (35%), Positives = 55/100 (55%), Gaps = 1/100 (1%)
Query: 607 ACEEVKQSXXXXXXXXXXXXMGNYMNSGSRNGGAFGFEINFLTKLSSTKDIENKTTLLHY 666
A VK S +GNYMNS S+ G +GF++ L L TK + K TLLH+
Sbjct: 201 ASASVKSSQKLKQMLEIILALGNYMNS-SKRGAVYGFKLQSLDLLLDTKSTDRKMTLLHF 259
Query: 667 LVDTIEQKFPECLKFGDELLHVDRAARVSTDVIQNSIRQM 706
+ T+++K+PE F EL V++AA VS + + ++++
Sbjct: 260 IALTVKEKYPELANFWQELHFVEKAAAVSLENVLLDVKEL 299
>pdb|1Y64|B Chain B, Bni1p Formin Homology 2 Domain Complexed With Atp-actin
Length = 443
Score = 53.5 bits (127), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 49/182 (26%), Positives = 81/182 (44%), Gaps = 5/182 (2%)
Query: 627 MGNYMNSGSRNGGAFGFEINFLTKLSSTKDIENKTTLLHYLVDTIEQKFPECLKFGDELL 686
+GN+MN S+ A GF+++ L +L+ KD N T L+Y+ + +P F EL
Sbjct: 249 VGNFMNDTSKQ--AQGFKLSTLQRLTFIKDTTNSMTFLNYVEKIVRLNYPSFNDFLSELE 306
Query: 687 HVDRAARVSTDVIQNSIRQMENNIKNLE--TDIQNCKQAPVANENDKFLEIMEPFAKEVR 744
V +VS + + N + +I N+E +I N + + DK L P E R
Sbjct: 307 PVLDVVKVSIEQLVNDCKDFSQSIVNVERSVEIGNLSDSSKFHPLDKVLIKTLPVLPEAR 366
Query: 745 QKITLLSNMSKNMMTLYGDLAEFYTFDK-NIYTLEEFFTDIKTFKDSFYQAWQENIKLRE 803
+K LL + K + + L Y D + + FF F + + +A +N+ E
Sbjct: 367 KKGDLLEDEVKLTIMEFESLMHTYGEDSGDKFAKISFFKKFADFINEYKKAQAQNLAAEE 426
Query: 804 AE 805
E
Sbjct: 427 EE 428
>pdb|1UX5|A Chain A, Crystal Structures Of A Formin Homology-2 Domain Reveal A
Flexibly Tethered Dimer Architecture
Length = 411
Score = 53.1 bits (126), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 49/182 (26%), Positives = 81/182 (44%), Gaps = 5/182 (2%)
Query: 627 MGNYMNSGSRNGGAFGFEINFLTKLSSTKDIENKTTLLHYLVDTIEQKFPECLKFGDELL 686
+GN+MN S+ A GF+++ L +L+ KD N T L+Y+ + +P F EL
Sbjct: 226 VGNFMNDTSKQ--AQGFKLSTLQRLTFIKDTTNSMTFLNYVEKIVRLNYPSFNDFLSELE 283
Query: 687 HVDRAARVSTDVIQNSIRQMENNIKNLE--TDIQNCKQAPVANENDKFLEIMEPFAKEVR 744
V +VS + + N + +I N+E +I N + + DK L P E R
Sbjct: 284 PVLDVVKVSIEQLVNDCKDFSQSIVNVERSVEIGNLSDSSKFHPLDKVLIKTLPVLPEAR 343
Query: 745 QKITLLSNMSKNMMTLYGDLAEFYTFDK-NIYTLEEFFTDIKTFKDSFYQAWQENIKLRE 803
+K LL + K + + L Y D + + FF F + + +A +N+ E
Sbjct: 344 KKGDLLEDEVKLTIMEFESLMHTYGEDSGDKFAKISFFKKFADFINEYKKAQAQNLAAEE 403
Query: 804 AE 805
E
Sbjct: 404 EE 405
>pdb|1UX4|A Chain A, Crystal Structures Of A Formin Homology-2 Domain Reveal A
Tethered-Dimer Architecture
pdb|1UX4|B Chain B, Crystal Structures Of A Formin Homology-2 Domain Reveal A
Tethered-Dimer Architecture
Length = 410
Score = 52.8 bits (125), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 49/182 (26%), Positives = 81/182 (44%), Gaps = 5/182 (2%)
Query: 627 MGNYMNSGSRNGGAFGFEINFLTKLSSTKDIENKTTLLHYLVDTIEQKFPECLKFGDELL 686
+GN+MN S+ A GF+++ L +L+ KD N T L+Y+ + +P F EL
Sbjct: 220 VGNFMNDTSKQ--AQGFKLSTLQRLTFIKDTTNSMTFLNYVEKIVRLNYPSFNDFLSELE 277
Query: 687 HVDRAARVSTDVIQNSIRQMENNIKNLE--TDIQNCKQAPVANENDKFLEIMEPFAKEVR 744
V +VS + + N + +I N+E +I N + + DK L P E R
Sbjct: 278 PVLDVVKVSIEQLVNDCKDFSQSIVNVERSVEIGNLSDSSKFHPLDKVLIKTLPVLPEAR 337
Query: 745 QKITLLSNMSKNMMTLYGDLAEFYTFDK-NIYTLEEFFTDIKTFKDSFYQAWQENIKLRE 803
+K LL + K + + L Y D + + FF F + + +A +N+ E
Sbjct: 338 KKGDLLEDEVKLTIMEFESLMHTYGEDSGDKFAKISFFKKFADFINEYKKAQAQNLAAEE 397
Query: 804 AE 805
E
Sbjct: 398 EE 399
>pdb|4DVG|B Chain B, Crystal Structure Of E. Histolytica Formin1 Bound To
Ehrho1-Gtpgammas
Length = 353
Score = 40.0 bits (92), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 35/131 (26%), Positives = 60/131 (45%), Gaps = 16/131 (12%)
Query: 294 GLMVKGNNEALRTACLQLINAIVATPDDLEFRLHLRNEIMRVGLYDLLDA---LEKDASE 350
L K +E + A L LIN ++ P+ LE R +RN + +GL + L+ E +
Sbjct: 227 SLFSKSKSEKFKHASLVLINNLIDQPE-LEHRXDVRNSFIEIGLVNELENXKNTEWXKID 285
Query: 351 DVSVQLKVFIEHKEEDYYEFIQRFDNVRMEIDDVNDCFETVR---NMVMDSA----CEPY 403
+ + F + EED E RFD+++ +D FE+ + N V + C
Sbjct: 286 KIKDSINDFFDSWEEDKKEVESRFDDLKQVVD-----FESTKSLNNYVTEQXDKFECNDI 340
Query: 404 LLSILQHLLFI 414
L ++ + +LF
Sbjct: 341 LTNVHKEILFF 351
>pdb|2BAP|D Chain D, Crystal Structure Of The N-Terminal Mdia1 Armadillo Repeat
Region And Dimerisation Domain In Complex With The Mdia1
Autoregulatory Domain (Dad)
pdb|2BAP|C Chain C, Crystal Structure Of The N-Terminal Mdia1 Armadillo Repeat
Region And Dimerisation Domain In Complex With The Mdia1
Autoregulatory Domain (Dad)
Length = 56
Score = 36.6 bits (83), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 16/24 (66%), Positives = 19/24 (79%)
Query: 832 LIDMTTDQTQQGVMDSLLEALQTG 855
LIDM + + GVMDSLLEALQ+G
Sbjct: 25 LIDMNAEGDETGVMDSLLEALQSG 48
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.133 0.374
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 23,732,421
Number of Sequences: 62578
Number of extensions: 916909
Number of successful extensions: 2615
Number of sequences better than 100.0: 28
Number of HSP's better than 100.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 2533
Number of HSP's gapped (non-prelim): 46
length of query: 927
length of database: 14,973,337
effective HSP length: 108
effective length of query: 819
effective length of database: 8,214,913
effective search space: 6728013747
effective search space used: 6728013747
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 56 (26.2 bits)