Query psy15122
Match_columns 927
No_of_seqs 445 out of 1673
Neff 7.2
Searched_HMMs 46136
Date Fri Aug 16 21:10:52 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy15122.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/15122hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1924|consensus 100.0 2E-168 5E-173 1406.1 61.8 807 47-917 48-1088(1102)
2 KOG1923|consensus 100.0 2.2E-56 4.8E-61 507.7 29.8 204 592-806 538-741 (830)
3 KOG1924|consensus 100.0 4.5E-43 9.8E-48 395.9 24.8 396 13-527 79-509 (1102)
4 smart00498 FH2 Formin Homology 100.0 3.5E-43 7.6E-48 406.0 20.3 260 590-853 172-432 (432)
5 PF02181 FH2: Formin Homology 100.0 1.7E-35 3.7E-40 337.0 15.8 201 590-792 170-370 (370)
6 PF06367 Drf_FH3: Diaphanous F 100.0 3.1E-31 6.7E-36 275.8 17.0 195 267-487 1-197 (197)
7 PF06371 Drf_GBD: Diaphanous G 100.0 9.5E-30 2E-34 262.2 11.1 177 78-263 3-187 (187)
8 KOG1925|consensus 99.9 2.2E-24 4.8E-29 234.9 20.2 201 595-802 451-654 (817)
9 KOG1922|consensus 99.9 1.7E-23 3.7E-28 261.5 21.7 213 592-805 563-793 (833)
10 PF06371 Drf_GBD: Diaphanous G 98.5 3E-08 6.4E-13 102.2 2.2 138 17-183 3-163 (187)
11 PF11841 DUF3361: Domain of un 96.7 0.02 4.3E-07 57.1 12.0 145 169-336 1-149 (160)
12 PF06345 Drf_DAD: DRF Autoregu 96.4 0.0021 4.5E-08 36.6 1.6 13 843-855 1-13 (15)
13 KOG1923|consensus 95.2 0.033 7.2E-07 66.6 6.4 145 216-362 1-147 (830)
14 KOG0212|consensus 92.8 8.7 0.00019 45.4 19.4 150 236-387 379-551 (675)
15 KOG2391|consensus 92.2 6.6 0.00014 43.5 16.6 15 756-770 297-311 (365)
16 PHA03247 large tegument protei 91.1 0.35 7.6E-06 65.0 6.6 47 209-257 1993-2042(3151)
17 KOG4849|consensus 91.0 0.39 8.4E-06 52.6 5.7 23 593-615 385-407 (498)
18 PRK13729 conjugal transfer pil 89.5 1.9 4E-05 50.3 9.9 47 486-532 62-116 (475)
19 KOG3671|consensus 89.2 0.85 1.8E-05 52.5 6.8 7 619-625 497-503 (569)
20 PHA03247 large tegument protei 88.8 0.68 1.5E-05 62.4 6.4 7 331-337 2117-2123(3151)
21 KOG1925|consensus 84.4 1.1 2.4E-05 51.4 4.3 14 841-854 704-717 (817)
22 smart00498 FH2 Formin Homology 83.8 10 0.00023 44.5 12.4 116 681-798 311-431 (432)
23 PF05308 Mito_fiss_reg: Mitoch 83.7 3.7 7.9E-05 44.5 7.8 7 499-505 122-128 (253)
24 KOG0132|consensus 82.7 2.4 5.3E-05 51.4 6.5 9 366-374 437-445 (894)
25 PF05004 IFRD: Interferon-rela 81.7 96 0.0021 34.8 19.0 189 137-358 46-248 (309)
26 KOG3080|consensus 76.1 42 0.0009 36.8 12.5 43 728-771 133-175 (328)
27 PF05518 Totivirus_coat: Totiv 75.7 4.8 0.0001 49.3 6.1 6 212-217 210-215 (759)
28 KOG2999|consensus 75.1 19 0.00042 42.6 10.4 166 133-328 78-252 (713)
29 PF01213 CAP_N: Adenylate cycl 73.9 68 0.0015 36.0 14.1 34 325-359 45-78 (312)
30 KOG4199|consensus 73.5 46 0.00099 37.4 12.2 140 178-344 283-424 (461)
31 KOG4849|consensus 71.0 9.2 0.0002 42.3 6.3 8 353-360 27-34 (498)
32 PF07462 MSP1_C: Merozoite sur 70.9 12 0.00027 44.0 7.6 7 432-438 217-223 (574)
33 KOG4672|consensus 70.9 11 0.00024 42.7 6.9 19 597-615 409-427 (487)
34 PF09849 DUF2076: Uncharacteri 69.7 38 0.00083 36.7 10.6 15 517-531 59-73 (247)
35 cd00020 ARM Armadillo/beta-cat 69.7 28 0.00061 31.8 8.8 110 136-262 9-119 (120)
36 PF10508 Proteasom_PSMB: Prote 69.6 2.6E+02 0.0055 33.7 19.7 66 206-272 91-156 (503)
37 PF10508 Proteasom_PSMB: Prote 69.1 1E+02 0.0023 37.0 15.5 105 206-323 133-237 (503)
38 KOG1103|consensus 64.7 1.3E+02 0.0029 33.5 13.4 51 592-642 490-558 (561)
39 cd00020 ARM Armadillo/beta-cat 63.5 59 0.0013 29.6 9.6 59 206-265 21-80 (120)
40 PF01690 PLRV_ORF5: Potato lea 63.2 5.6 0.00012 46.2 2.9 18 638-655 141-158 (465)
41 PRK11637 AmiB activator; Provi 62.2 2E+02 0.0043 33.8 15.7 33 736-768 101-133 (428)
42 KOG0132|consensus 61.5 17 0.00036 44.6 6.4 27 83-109 7-34 (894)
43 PF10152 DUF2360: Predicted co 61.2 74 0.0016 31.7 10.2 28 498-532 20-47 (148)
44 PF12325 TMF_TATA_bd: TATA ele 61.0 62 0.0013 31.1 9.1 51 741-793 64-114 (120)
45 PHA03185 UL14 tegument protein 60.3 72 0.0016 33.0 9.7 18 495-512 68-85 (214)
46 PRK14950 DNA polymerase III su 59.8 4.1E+02 0.0089 32.6 20.2 10 327-336 187-196 (585)
47 PRK13729 conjugal transfer pil 58.9 81 0.0017 37.2 11.2 36 495-530 79-121 (475)
48 PF07200 Mod_r: Modifier of ru 55.6 1E+02 0.0023 30.4 10.3 51 747-806 98-148 (150)
49 KOG4848|consensus 54.8 2.4E+02 0.0051 29.2 12.2 21 753-773 165-187 (225)
50 KOG1922|consensus 54.6 17 0.00038 46.4 5.7 66 732-797 668-736 (833)
51 PF12325 TMF_TATA_bd: TATA ele 54.0 68 0.0015 30.8 8.1 100 658-766 12-117 (120)
52 PF05518 Totivirus_coat: Totiv 53.9 21 0.00047 43.9 5.8 12 210-221 211-222 (759)
53 KOG0163|consensus 50.9 1.9E+02 0.0042 35.8 12.7 15 379-393 507-521 (1259)
54 PF04108 APG17: Autophagy prot 49.8 4.9E+02 0.011 30.5 16.1 32 778-809 335-366 (412)
55 cd00256 VATPase_H VATPase_H, r 49.6 1.4E+02 0.0031 35.1 11.4 141 206-362 158-305 (429)
56 COG3416 Uncharacterized protei 49.2 1.3E+02 0.0029 31.4 9.7 17 519-535 61-77 (233)
57 KOG4368|consensus 49.0 5.6E+02 0.012 31.0 20.8 18 387-404 142-159 (757)
58 PF07304 SRA1: Steroid recepto 48.7 3.8 8.2E-05 41.3 -1.3 14 661-674 91-104 (157)
59 PF03224 V-ATPase_H_N: V-ATPas 47.6 1.3E+02 0.0028 33.6 10.6 138 205-356 163-305 (312)
60 PF03276 Gag_spuma: Spumavirus 47.5 2.4E+02 0.0052 33.8 12.5 13 660-672 343-355 (582)
61 PF07106 TBPIP: Tat binding pr 45.9 2.8E+02 0.0061 28.0 11.8 82 696-799 81-162 (169)
62 KOG0946|consensus 45.5 5.3E+02 0.012 32.5 15.3 190 90-317 30-241 (970)
63 KOG0566|consensus 42.9 32 0.0007 43.3 5.0 14 85-98 417-430 (1080)
64 PLN03200 cellulose synthase-in 41.9 4E+02 0.0086 37.7 15.1 124 138-274 103-229 (2102)
65 PF10234 Cluap1: Clusterin-ass 41.7 82 0.0018 34.5 7.4 103 615-717 79-192 (267)
66 smart00503 SynN Syntaxin N-ter 40.5 2.4E+02 0.0052 26.1 9.8 64 697-762 11-74 (117)
67 KOG1062|consensus 40.1 1.8E+02 0.0039 36.4 10.5 50 205-260 290-339 (866)
68 KOG2072|consensus 40.1 4.5E+02 0.0097 33.2 13.7 27 743-769 727-753 (988)
69 PRK10132 hypothetical protein; 39.7 1.5E+02 0.0032 28.0 7.8 80 694-773 5-87 (108)
70 KOG0946|consensus 37.5 9.7E+02 0.021 30.4 23.8 211 134-405 18-251 (970)
71 PF07462 MSP1_C: Merozoite sur 37.3 57 0.0012 38.7 5.6 6 732-737 477-482 (574)
72 PF10165 Ric8: Guanine nucleot 36.9 3.9E+02 0.0084 31.7 12.7 57 212-269 1-67 (446)
73 KOG2140|consensus 36.7 1.3E+02 0.0029 35.7 8.4 63 209-276 255-321 (739)
74 KOG3546|consensus 36.2 1.1E+02 0.0024 36.8 7.7 8 661-668 993-1000(1167)
75 PF01213 CAP_N: Adenylate cycl 36.1 12 0.00026 41.9 0.0 19 409-427 131-149 (312)
76 PHA03211 serine/threonine kina 35.7 40 0.00087 40.0 4.3 23 693-715 256-278 (461)
77 PF06637 PV-1: PV-1 protein (P 35.1 76 0.0016 36.0 5.9 11 132-142 17-27 (442)
78 PF14664 RICTOR_N: Rapamycin-i 34.1 1.1E+02 0.0024 35.2 7.4 112 152-278 41-158 (371)
79 KOG0391|consensus 33.9 80 0.0017 41.0 6.4 11 433-443 1636-1646(1958)
80 KOG4302|consensus 33.7 4.6E+02 0.0099 32.6 12.6 67 734-800 106-174 (660)
81 PF11707 Npa1: Ribosome 60S bi 33.4 3.4E+02 0.0073 30.7 11.1 92 208-319 42-145 (330)
82 KOG0566|consensus 32.9 47 0.001 41.9 4.2 32 320-357 721-757 (1080)
83 PRK11637 AmiB activator; Provi 32.3 8.8E+02 0.019 28.4 16.8 23 735-757 107-129 (428)
84 PF10165 Ric8: Guanine nucleot 32.0 1.3E+02 0.0029 35.5 7.8 82 156-244 1-84 (446)
85 KOG0162|consensus 32.0 70 0.0015 39.2 5.3 10 86-95 253-262 (1106)
86 COG4575 ElaB Uncharacterized c 31.7 3.5E+02 0.0077 25.3 8.6 74 697-774 11-85 (104)
87 PRK14849 putative lipoprotein/ 31.4 32 0.00069 46.6 2.7 18 262-279 1072-1089(1806)
88 KOG2611|consensus 31.2 2.7E+02 0.0058 33.0 9.5 116 208-342 127-254 (698)
89 PF12037 DUF3523: Domain of un 30.9 56 0.0012 35.8 4.0 27 600-626 33-59 (276)
90 PF04625 DEC-1_N: DEC-1 protei 30.4 92 0.002 34.5 5.5 21 731-751 276-296 (407)
91 PHA03211 serine/threonine kina 29.3 58 0.0013 38.7 4.2 9 674-682 218-226 (461)
92 PF04420 CHD5: CHD5-like prote 28.9 2.4E+02 0.0052 28.4 8.0 66 697-768 36-103 (161)
93 KOG0301|consensus 28.9 5.8E+02 0.012 31.6 12.0 36 205-240 601-636 (745)
94 PF09849 DUF2076: Uncharacteri 28.9 1.1E+02 0.0023 33.3 5.8 17 519-535 54-70 (247)
95 PF05266 DUF724: Protein of un 28.5 6.9E+02 0.015 26.0 12.0 16 395-410 21-36 (190)
96 KOG2002|consensus 28.1 1.1E+03 0.024 30.6 14.6 153 258-415 204-389 (1018)
97 PRK14948 DNA polymerase III su 27.6 95 0.0021 38.4 5.8 6 615-620 602-607 (620)
98 PF10805 DUF2730: Protein of u 27.4 3.8E+02 0.0083 25.0 8.5 69 691-766 32-100 (106)
99 PF07946 DUF1682: Protein of u 27.3 1.7E+02 0.0038 32.9 7.4 10 623-632 184-193 (321)
100 cd07639 BAR_ACAP1 The Bin/Amph 27.0 7.6E+02 0.016 26.0 12.9 26 694-719 2-27 (200)
101 KOG0994|consensus 26.7 5.2E+02 0.011 33.9 11.5 21 615-635 1468-1488(1758)
102 PRK10404 hypothetical protein; 26.2 4.5E+02 0.0096 24.5 8.5 73 697-773 8-81 (101)
103 PLN03200 cellulose synthase-in 25.0 2.1E+03 0.046 31.0 17.7 98 152-264 420-518 (2102)
104 KOG1785|consensus 24.8 1.4E+02 0.0029 34.2 5.6 36 108-145 46-81 (563)
105 PF10458 Val_tRNA-synt_C: Valy 23.8 3.4E+02 0.0073 22.9 6.8 62 699-763 2-64 (66)
106 PF12348 CLASP_N: CLASP N term 23.6 4.1E+02 0.0089 27.7 9.1 53 207-264 109-161 (228)
107 PRK12270 kgd alpha-ketoglutara 23.6 1.5E+02 0.0032 38.3 6.2 23 687-709 230-252 (1228)
108 PF14523 Syntaxin_2: Syntaxin- 23.5 4.6E+02 0.01 23.7 8.3 57 701-767 3-59 (102)
109 KOG2759|consensus 22.6 1.3E+03 0.028 27.1 16.8 139 208-359 173-315 (442)
110 COG4985 ABC-type phosphate tra 22.2 5.1E+02 0.011 27.7 8.8 106 636-762 139-245 (289)
111 KOG0162|consensus 22.2 1.5E+02 0.0033 36.5 5.8 9 132-140 227-235 (1106)
112 KOG0559|consensus 22.1 1.8E+02 0.0038 33.1 5.8 14 693-706 341-354 (457)
113 PF08045 CDC14: Cell division 22.0 3.5E+02 0.0075 29.6 8.1 98 209-316 108-206 (257)
114 PF06003 SMN: Survival motor n 21.7 31 0.00066 37.8 0.0 34 554-587 173-216 (264)
115 PF04728 LPP: Lipoprotein leuc 21.6 3.9E+02 0.0084 22.2 6.2 25 696-720 5-29 (56)
116 KOG3397|consensus 21.5 1E+02 0.0022 31.4 3.5 11 303-313 23-33 (225)
117 PF07818 HCNGP: HCNGP-like pro 21.0 1.8E+02 0.0038 26.9 4.8 24 759-782 44-68 (96)
118 PF05957 DUF883: Bacterial pro 20.9 4.5E+02 0.0099 23.7 7.6 71 698-772 2-73 (94)
119 KOG0559|consensus 20.8 1.8E+02 0.004 32.9 5.7 12 736-747 287-298 (457)
120 PF01698 FLO_LFY: Floricaula / 20.4 34 0.00073 39.0 0.0 6 830-835 342-347 (386)
121 KOG0570|consensus 20.4 77 0.0017 32.8 2.5 25 544-568 1-37 (223)
122 PF12010 DUF3502: Domain of un 20.4 3.7E+02 0.008 26.1 7.3 43 312-362 89-132 (134)
123 PF08524 rRNA_processing: rRNA 20.2 6.4E+02 0.014 25.2 8.9 13 842-854 132-144 (148)
124 PF05835 Synaphin: Synaphin pr 20.1 2.5E+02 0.0055 27.7 5.9 34 798-831 39-72 (139)
125 KOG4603|consensus 20.1 6.2E+02 0.014 25.8 8.6 80 682-772 106-186 (201)
126 PF12238 MSA-2c: Merozoite sur 20.0 2.5E+02 0.0054 29.6 6.2 16 380-395 42-57 (205)
No 1
>KOG1924|consensus
Probab=100.00 E-value=2.3e-168 Score=1406.09 Aligned_cols=807 Identities=43% Similarity=0.728 Sum_probs=713.1
Q ss_pred chhhhhhhhhhccccccccccccc-----hhhhccCCCHHHHHHHHHHHHHhCCCChhhhhhhhCCChHhHHHHHHHHHh
Q psy15122 47 PLANKKKMLLMHYKGTVTSYENKK-----QENMLEKLNPEQLNQKFEDMLNDMNLSDEKKEPLRRQPLANKKKMLLMHYK 121 (927)
Q Consensus 47 ~~~~K~~m~~~~~~~~~~~~~~~~-----~~~~~~~~~~~ei~~~F~~lle~lnl~~~k~~~L~~~p~~~K~~li~~~~~ 121 (927)
...+|.++...|...++.+...-+ +++ ...++++++...|+.++++|||++++|++|++.+...|.+||.||..
T Consensus 48 ~~~~~sk~~~~H~~~ss~sn~d~pt~q~~q~~-~~~ls~~e~~~~F~~~~~dmni~eekr~pll~K~~~ek~kmis~~l~ 126 (1102)
T KOG1924|consen 48 AADFKSKPSPAHLRSSSASNNDYPTAQGLQDI-GFSLSSNEVLELFELMGEDMNINEEKRKPLLDKDLPEKRKMISQYLQ 126 (1102)
T ss_pred hcccccCCCcccCCCccccccCCcccccHHHH-hhhccHHHHHHHHHHHhhhccccHhhhhhhhhcCchHHHHHHHHHHH
Confidence 456777888889866554443322 333 45689999999999999999999999999999999999999999987
Q ss_pred ccccc-cccccCCCChHHHHHHhcCCccchhhhhhhHHHHHHHhccCCchhHHHHhhhhhhhhhhcchhhhcCcC-CCCC
Q psy15122 122 GTVTS-YENKSKFDKPIEYIQYLSQPELSVNKMYSCIESLRIALTNHPLSWVNEFVLQDNKNFRKYPIAFLYPRF-PSRS 199 (927)
Q Consensus 122 ~~~~~-~~~~~~~~~P~~~i~~L~~~~~~~~~~~~~l~~Lrv~L~t~~~sWv~~F~~~Gl~~Ll~~~l~~ll~~l-~~~~ 199 (927)
.+... ...+....++.+||++|+++ ++++++++||.+|||+|++||||||.+|+.+|++.++++ +.+| +++.
T Consensus 127 ~k~~~~~s~ne~~~~s~eyV~~l~~g-l~t~~l~~CleslRVsL~~npVSwvn~Fgvegl~ll~~~-----Lkrl~dsk~ 200 (1102)
T KOG1924|consen 127 MKMMIRKSDNEAKGSSPEYVVELRSG-LSTKKLLECLESLRVSLTSNPVSWVNKFGVEGLGLLLDV-----LKRLRDSKV 200 (1102)
T ss_pred HHHHHhhhhhhhccCChHHHHHHHcc-cccccHHHHHHHHhhhhcCCccHHHHHhhhhhHHHHHHH-----HHHHHhhhh
Confidence 76511 22356778999999999998 888999999999999999999999999999999999885 4555 2222
Q ss_pred CCcchhhHHHHHHHHHHHHHHhcHhhHHHHhcchhHHHHHHHhcCCCChhHHHHHHHHhhhhcccCCC-chHHHHHHHHh
Q psy15122 200 RNDSRYDRVQYECVRCIRAIMNNTVGLKQMFGQKEALTIVARSLDPNKPTVMLEAVKVLAAVCLIPPD-GHDKVIKAITM 278 (927)
Q Consensus 200 ~~~~~~~~~~~e~vkCLkaimN~~~Gl~~vl~~~~~i~~la~sl~~~~~~~~~~vlelLaalc~~~~~-Gh~~VL~Al~~ 278 (927)
....+.+.++|+|+||||+|||++|+..||...+.+..++++++++.+.+|++|+++|+++|++.+. |.++||+||+.
T Consensus 201 -~~~~~~k~~~eiIrClka~mNn~~Gl~~vL~~e~~lllla~aldpr~pnmm~dvvkllsalciV~ee~~~ekvl~aiT~ 279 (1102)
T KOG1924|consen 201 -GSKLDIKNLQEIIRCLKAFMNNKFGLVLVLRRERSLLLLARALDPREPNMMTDVVKLLSALCIVGEENGLEKVLEAITT 279 (1102)
T ss_pred -hhhhHHHHHHHHHHHHHHHhccccceeeeecCCccHHHHHHhcCccCccHHHHHHHHHHHHheeehhhHHHHHHHHHHH
Confidence 2334677899999999999999999999999999999999999999999999999999999999854 99999999999
Q ss_pred hcccccCcChHHHHHHHhccCCCHHHHHHHHHHHHHHHcCchhHHHHHHHHHHHHHhChHHHHHHHhhcCChhHHHHHHH
Q psy15122 279 SGELKGKERFQPVVQGLMVKGNNEALRTACLQLINAIVATPDDLEFRLHLRNEIMRVGLYDLLDALEKDASEDVSVQLKV 358 (927)
Q Consensus 279 ~~~~~e~~RF~~lv~~L~~~~~~~~~~~~~m~lIN~Lv~s~~dl~~Ri~lR~Ef~~~GL~eil~~L~~~~~~~L~~ql~~ 358 (927)
.++.....||+|||++| .+.....+.++||+|||+|+++++||+||+|||+||+++||+++|+.|+.++++.+++|+++
T Consensus 280 ~ae~~~veRF~piv~gl-~~~e~~~l~vacmq~INal~t~p~dldfRlhlR~E~mr~gL~~~l~~l~~i~n~~ldvqlkv 358 (1102)
T KOG1924|consen 280 IAEAKPVERFRPIVEGL-DFLEKQQLQVACMQFINALVTSPSDLDFRLHLRSEFMRDGLHKYLPDLTEINNDILDVQLKV 358 (1102)
T ss_pred HHhhcchhhhhhHHHHH-hccchHHHHHHHHHHHHHhcCCHHHhhHHHHHHHHHHHHhHHHHHHHhhhhccHHHHHHHHH
Confidence 99999999999999999 56679999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhhHhHHHHHHHhchhcccccCCHHHHHHHHHHHhhcCCCchhhHHHHHhhhhccccchhhhhhhhhhhHHHHHHHhh
Q psy15122 359 FIEHKEEDYYEFIQRFDNVRMEIDDVNDCFETVRNMVMDSACEPYLLSILQHLLFIRDDQNMVMDSACEPYLLSILQHLL 438 (927)
Q Consensus 359 f~~~~~~D~~el~~r~~~~~~d~~~~~~~f~~l~~~v~~t~a~~~f~sil~~ll~~~~~~~~~~~~~~~p~~lSilQhll 438 (927)
|++++++|.++|++|+++++.++||+.+||++|++.|++|.+++|| |||||||+
T Consensus 359 fdE~~e~Dl~el~~rledir~emDd~~~~f~lL~n~vkdT~aE~yf--------------------------LSILQhll 412 (1102)
T KOG1924|consen 359 FDEHKEDDLEELSGRLEDIRAEMDDANEVFELLANTVKDTGAEPYF--------------------------LSILQHLL 412 (1102)
T ss_pred HhhhhhhhHHHHHhHHHhhhhhhccHHHHHHHHHHhhhhccccchH--------------------------HHHHHHHH
Confidence 9999999999999999999999999999999999999999999999 99999999
Q ss_pred hccchhhHHHHHHHHHHHHHHHHHhccCCCCCCccccccccccchHHHHHHHHhhh-hhHhHHHHHHHHHHHHHHHHHHH
Q psy15122 439 FIRDDQYVRLAYYKLLEECVSQIVLHRGGCDPDFRSSRRFQLDVQPLVEHLAEKSK-TEEDRRVEDLSAKLEEAIMLRQE 517 (927)
Q Consensus 439 li~~d~~~~~~~~~Lid~~v~qivl~r~g~d~d~~~~~~~~~dv~~ll~~l~~~~~-~~~~k~~~el~~kle~~~~~~qe 517 (927)
+||+|+.+|++||+|||+||||||+|++|+||||.++.+|++|+..+||.++++++ ++.++++.++.++++++.+++||
T Consensus 413 lirnDy~~rpqYykLIEecISqIvlHr~~~DPdf~yr~~l~id~~~liD~~vdkak~eeseqkA~e~~kk~~ke~ta~qe 492 (1102)
T KOG1924|consen 413 LIRNDYYIRPQYYKLIEECISQIVLHRTGMDPDFKYRFRLDIDLTELIDKMVDKAKAEESEQKAAELEKKFDKELTARQE 492 (1102)
T ss_pred HHhhhhhhhHHHHHHHHHHHHHHHHhcCCCCCCcchhhcccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 99999999999999999999999999999999999999999999999999999998 77778999999999999999999
Q ss_pred HHHHHHHHhhhhhcccCCC---------------CCCCCCCCC---------C--cC-CCCCCCCCCCC------CCCCC
Q psy15122 518 AEAKLVQAQKTLEDLSSGR---------------PVEKNRLDE---------V--KA-QVAAGIPTGPK------GGPPP 564 (927)
Q Consensus 518 ~ea~~~~le~~i~~l~~~~---------------~~~~~~~p~---------~--~~-~~~~~~ppppp------~~ppp 564 (927)
+++++++.+.+|..++++. +++||++|| | || |+++||||||| |+|||
T Consensus 493 ~qael~k~e~Ki~~l~ae~~al~s~~~~~~~~~~iP~PP~~pp~gG~g~pppPppPPlpggag~PPPPpplPg~aG~PPp 572 (1102)
T KOG1924|consen 493 AQAELQKHEEKIKLLEAEKQALSSPSQLLPIDGGIPPPPPLPPTGGTGPPPPPPPPPLPGGAGPPPPPPPLPGIAGGPPP 572 (1102)
T ss_pred HHHHHHHhhhhcccCchhhhhccCcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccCCCCCcccCCCCc
Confidence 9999999999998887651 111111110 0 00 00111111111 12333
Q ss_pred CCCCCC-CCCCCCCCCCC----CCCCCCCC-------CC-----------------------------------------
Q psy15122 565 PPPPPG-GMGPPPPPMPG----MPGPPPPP-------MP----------------------------------------- 591 (927)
Q Consensus 565 ppp~pg-~~~ppppp~pg----~p~pp~p~-------lp----------------------------------------- 591 (927)
|||||| +||||||||+| +||||+|- ||
T Consensus 573 Pppppg~~gppPPPpp~g~~Gg~ppPP~~gm~pmaPvlP~gLkpKK~~k~e~~Mrr~nW~kI~p~d~s~~cFWvkv~Edk 652 (1102)
T KOG1924|consen 573 PPPPPGGGGPPPPPPPGGFLGGPPPPPPPGMFPMAPVLPFGLKPKKVYKPEVPMRRFNWSKIVPRDLSENCFWVKVNEDK 652 (1102)
T ss_pred cCCCCCCCCCCCcCCCCCCCCCCCCCCCCCcccccccCCCCCCccccCCCCCccccCCccccCccccCccceeeecchhh
Confidence 333333 23333333322 22222210 22
Q ss_pred --------------------------------------------------------------------------------
Q psy15122 592 -------------------------------------------------------------------------------- 591 (927)
Q Consensus 592 -------------------------------------------------------------------------------- 591 (927)
T Consensus 653 ~en~dlfakL~~~Fatq~k~~k~~e~~eekkt~~kKk~kel~ilDsKtaQnLsIflgS~rmpyeeik~~ILevne~vLse 732 (1102)
T KOG1924|consen 653 LENDDLFAKLALKFATQPKVKKEQEGGEEKKTGTKKKVKELRILDSKTAQNLSIFLGSFRMPYEEIKNVILEVNEDVLSE 732 (1102)
T ss_pred ccchHHHHHHHHHhhccccccccccccccccchhhhhhhhheecchHHHHHHHHHHhhccCCHHHHHHHHhhccHHHHHH
Confidence
Q ss_pred -----------------------------------------------------------ccccccccccccccccchhhh
Q psy15122 592 -----------------------------------------------------------EMYTDCHKNIINGKQACEEVK 612 (927)
Q Consensus 592 -----------------------------------------------------------e~v~~i~~~i~~v~~A~~el~ 612 (927)
|.|++|+|+|.+|++||+||+
T Consensus 733 ~~iqnLik~lPe~E~l~~L~e~Kaeye~l~e~EQF~vvm~~vkrL~pRL~~ilFKl~fse~vnniKP~i~avt~ACEE~r 812 (1102)
T KOG1924|consen 733 SMIQNLIKHLPEQEQLNKLSELKAEYEDLPEPEQFVVVMSQVKRLRPRLSAILFKLTFSEQVNNIKPDIVAVTAACEELR 812 (1102)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHhccCCCCHHHHhHHHhhccccChhHHHHHHHhhHHHHHhhcChHHHHHHHHHHHHH
Confidence 889999999999999999999
Q ss_pred hchhHHHHHHHHHHhcccccCCCCCcccceeeecccccccccccCCCCcchhHHHHHHHHhhCCccCchhhhhhhHHHhh
Q psy15122 613 QSKKLAKILELILLMGNYMNSGSRNGGAFGFEINFLTKLSSTKDIENKTTLLHYLVDTIEQKFPECLKFGDELLHVDRAA 692 (927)
Q Consensus 613 ~S~~f~~lL~~IL~iGNymN~gs~~g~A~GFkLssL~KL~dtKs~d~k~TLLh~l~~~v~~~~p~ll~f~~eL~~v~~As 692 (927)
+|++|.++|++||.+|||||+||++.+||||+|++|+||.||||+|+|+||||||+++|+++||++++|.+||.||++||
T Consensus 813 kSesFs~lLeLvLl~GNyMn~gSrNa~afgF~is~L~kL~dTKsaDqk~TLLHfLae~~e~kypd~l~F~ddl~hv~kaS 892 (1102)
T KOG1924|consen 813 KSESFSKLLELVLLVGNYMNSGSRNAQAFGFNISFLCKLRDTKSADQKTTLLHFLAEICEEKYPDILKFPDDLEHVEKAS 892 (1102)
T ss_pred hhhhHHHHHHHHHHHhcccccccccchhhccchHHHHhhccccccchhhHHHHHHHHHHHHhChhhhcchhhHHHHHhhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCcchhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCC
Q psy15122 693 RVSTDVIQNSIRQMENNIKNLETDIQNCKQAPVANENDKFLEIMEPFAKEVRQKITLLSNMSKNMMTLYGDLAEFYTFDK 772 (927)
Q Consensus 693 kvs~~~l~~~~~~L~~~l~~l~~~l~~~~~~~~~~~~D~f~~~m~~F~~~a~~~~~~L~~~~~~~~~~~~~l~~yfgEd~ 772 (927)
|||.+.|.+.+.+|...+++++.+++.++.. .+++|.|.++|..|.++|++++..|..++.+|++.|+++.+||.+|+
T Consensus 893 rvnad~ikK~~~~m~~~ik~Le~dlk~~~~~--~~e~dkF~ekM~~F~e~a~eq~~~ls~M~~~M~~lye~L~eYyaFd~ 970 (1102)
T KOG1924|consen 893 RVNADEIKKNLQQMENQIKKLERDLKNFKIA--GNEHDKFVEKMTSFHEKAREQYSKLSSMHGNMEKLYESLGEYYAFDP 970 (1102)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHhcCCC--CcchhhHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHeecCc
Confidence 9999999999999999999999999999887 78999999999999999999999999999999999999999999999
Q ss_pred CCCcccchhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCccchHHHHHHHH
Q psy15122 773 NIYTLEEFFTDIKTFKDSFYQAWQENIKLREAEEKSIRVREAREKAENEKKDKAARKKALIDMTTDQTQQGVMDSLLEAL 852 (927)
Q Consensus 773 ~~~~~eefF~~~~~F~~~f~~a~~en~~~~e~eek~rr~~~akekaerek~er~~~kk~~~~~~~~~~~~~v~D~Ll~~L 852 (927)
+++++||||++|.+|.++|..|++||+++|+++|+.||+++|+|++++|++|||+|+++++||++.+|++||||+||++|
T Consensus 971 kkysmEEFFaDi~tFrnaf~ea~~en~krRee~Ek~rr~k~a~eqseqEr~erQqrk~alIdm~a~~de~GVmDslLeaL 1050 (1102)
T KOG1924|consen 971 KKYSMEEFFADIRTFRNAFLEAVAENEKRREEEEKERRAKLAKEQSEQERLERQQRKKALIDMNAEGDETGVMDSLLEAL 1050 (1102)
T ss_pred ccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHhccccccchhhhHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCCCCCCCCCCCCCCCCccccccchhhHHHhhhhcCCCCCcHHHHhhhhhcccCCCcccccc
Q psy15122 853 QTGRPKKTGSSIKSVGCPSHSALQTGSAFTREQRRKRQNDRPMGAERRAQLNRSRSRNGIVITRE 917 (927)
Q Consensus 853 rsg~p~~~~~~~~~~~~~~~~~~~~~~af~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 917 (927)
+| |+||+.||+|.+.+++ | ||.+|.|||||+..+.+..
T Consensus 1051 qs-----------------------gaafr~rrk~~prq~~--~--r~g~l~rsrsrh~~a~gql 1088 (1102)
T KOG1924|consen 1051 QS-----------------------GAAFRTRRKRLPRQTR--G--RRGCLDRSRSRHQNALGQL 1088 (1102)
T ss_pred Hh-----------------------hccccCcccccCCCCc--c--cccchhhhhHhhhhhhhHH
Confidence 99 9999988887643322 2 9999999999988776543
No 2
>KOG1923|consensus
Probab=100.00 E-value=2.2e-56 Score=507.75 Aligned_cols=204 Identities=28% Similarity=0.422 Sum_probs=192.8
Q ss_pred ccccccccccccccccchhhhhchhHHHHHHHHHHhcccccCCCCCcccceeeecccccccccccCCCCcchhHHHHHHH
Q psy15122 592 EMYTDCHKNIINGKQACEEVKQSKKLAKILELILLMGNYMNSGSRNGGAFGFEINFLTKLSSTKDIENKTTLLHYLVDTI 671 (927)
Q Consensus 592 e~v~~i~~~i~~v~~A~~el~~S~~f~~lL~~IL~iGNymN~gs~~g~A~GFkLssL~KL~dtKs~d~k~TLLh~l~~~v 671 (927)
|.+.-+.|++.+++.|+..+++|.+|+.+|++||++|||||.+ +||.+|||+|+||.-|.+|||+|.++||||||+-.+
T Consensus 538 dsv~ll~pq~~si~aAS~s~k~sr~lr~VleiILA~gNymns~-kRg~ayGFklqslD~ll~tkStDr~~tLlh~iv~~i 616 (830)
T KOG1923|consen 538 DSVQLLAPQLISIIAASKSLKESRKLRPVLEIILAFGNYMNSS-KRGAAYGFKLQSLDSLLDTKSTDRSMTLLHYIVLTI 616 (830)
T ss_pred hhhhhhhhHHHHHHHHHhhHHHHHHHHHHHHHHHHhhccCCCc-ccccccceeccccHHHhhccCCccceeeeehhhHHH
Confidence 7788899999999999999999999999999999999999997 569999999999999999999999999999999999
Q ss_pred HhhCCccCchhhhhhhHHHhhccCHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCcchhHHHHHhhhHHHHHHHHHHHH
Q psy15122 672 EQKFPECLKFGDELLHVDRAARVSTDVIQNSIRQMENNIKNLETDIQNCKQAPVANENDKFLEIMEPFAKEVRQKITLLS 751 (927)
Q Consensus 672 ~~~~p~ll~f~~eL~~v~~Askvs~~~l~~~~~~L~~~l~~l~~~l~~~~~~~~~~~~D~f~~~m~~F~~~a~~~~~~L~ 751 (927)
+++||.+..|.+||..+++|+.|+++.+..||.+|.++....+++.+.. ..| ..|..|+..+..+++.|+
T Consensus 617 ~eklp~l~~F~~el~~~eKa~av~lesV~~Dv~eL~~g~~l~~kE~e~~-------~~~---~iL~~F~~n~~~kmkkl~ 686 (830)
T KOG1923|consen 617 AEKLPALQLFFSELDFVEKATAVQLESVLADVKELNAGMTLAEKETERE-------GLD---VILSEFLDNNKPKMKKLR 686 (830)
T ss_pred HHhhHHHHhhHHHhhccchhhhhhhhccchhHHHHHhHHHHHHHHHhhh-------ccc---hHHHHHHhcccHHHHHHH
Confidence 9999999999999999999999999999999999999999999977642 222 679999999999999999
Q ss_pred HHHHHHHHHHHHHHHHcccCCCCCcccchhccHHHHHHHHHHHHHHHHHHHHHHH
Q psy15122 752 NMSKNMMTLYGDLAEFYTFDKNIYTLEEFFTDIKTFKDSFYQAWQENIKLREAEE 806 (927)
Q Consensus 752 ~~~~~~~~~~~~l~~yfgEd~~~~~~eefF~~~~~F~~~f~~a~~en~~~~e~ee 806 (927)
..++.+...|..++.||||.|+..+|..||..|..|+..|+.+..||+.+.+.|+
T Consensus 687 ~~~k~A~~af~~~~~y~Gespk~tppt~ff~~f~~F~~~~k~~~~ene~k~~le~ 741 (830)
T KOG1923|consen 687 KDFKDAAEAFEDVVEYFGESPKTTPPTVFFQLFVRFVRAYKMARQENEQKKKLEA 741 (830)
T ss_pred HHHHHHHHHHHhHhHhhCCCCCCCCCCccHHHHHHHHHHHHhhhhhhhhhhhHHH
Confidence 9999999999999999999999999999999999999999999999988877654
No 3
>KOG1924|consensus
Probab=100.00 E-value=4.5e-43 Score=395.85 Aligned_cols=396 Identities=21% Similarity=0.283 Sum_probs=291.5
Q ss_pred HhhcCCHHHHHHHHHHhhccCCCCcccccccccCchhhhhhhhhhcccccc------ccccccchhhhccCCCHHHHHHH
Q psy15122 13 MLEKLNPEQLNQKFEDMLNDMNLSDEKKEPLRRQPLANKKKMLLMHYKGTV------TSYENKKQENMLEKLNPEQLNQK 86 (927)
Q Consensus 13 ~~~~~~~~~~~~~f~~~~~~~n~~~~~~~~~~~~~~~~K~~m~~~~~~~~~------~~~~~~~~~~~~~~~~~~ei~~~ 86 (927)
+...+|+++++++|++|++||||+||||+||+.|++.+|++||+||++++. ++...++++|+++..++ --+..
T Consensus 79 ~~~~ls~~e~~~~F~~~~~dmni~eekr~pll~K~~~ek~kmis~~l~~k~~~~~s~ne~~~~s~eyV~~l~~g-l~t~~ 157 (1102)
T KOG1924|consen 79 IGFSLSSNEVLELFELMGEDMNINEEKRKPLLDKDLPEKRKMISQYLQMKMMIRKSDNEAKGSSPEYVVELRSG-LSTKK 157 (1102)
T ss_pred HhhhccHHHHHHHHHHHhhhccccHhhhhhhhhcCchHHHHHHHHHHHHHHHHhhhhhhhccCChHHHHHHHcc-ccccc
Confidence 355799999999999999999999999999999999999999999998844 34577889999998776 66778
Q ss_pred HHHHHHhCCCChhhhhhhhCCChHhHHHHHHHHHhccccccccccCCCChHHHHHHhc---C---C-ccchhhhhhhHHH
Q psy15122 87 FEDMLNDMNLSDEKKEPLRRQPLANKKKMLLMHYKGTVTSYENKSKFDKPIEYIQYLS---Q---P-ELSVNKMYSCIES 159 (927)
Q Consensus 87 F~~lle~lnl~~~k~~~L~~~p~~~K~~li~~~~~~~~~~~~~~~~~~~P~~~i~~L~---~---~-~~~~~~~~~~l~~ 159 (927)
..+|+++++++ |+++|. ||+++|+.++-..|...|+ + + .+..+.++++|+|
T Consensus 158 l~~CleslRVs------L~~npV----------------Swvn~Fgvegl~ll~~~Lkrl~dsk~~~~~~~k~~~eiIrC 215 (1102)
T KOG1924|consen 158 LLECLESLRVS------LTSNPV----------------SWVNKFGVEGLGLLLDVLKRLRDSKVGSKLDIKNLQEIIRC 215 (1102)
T ss_pred HHHHHHHHhhh------hcCCcc----------------HHHHHhhhhhHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHH
Confidence 89999999999 999999 9999999998888887663 1 2 2356688999999
Q ss_pred HHHHhccCCchhHHHHhh---hhhhhhhhcchhhhcCcCCCCCCCcchhhHHHHHHHHHHHHHHhcHh--hHHHHhcchh
Q psy15122 160 LRIALTNHPLSWVNEFVL---QDNKNFRKYPIAFLYPRFPSRSRNDSRYDRVQYECVRCIRAIMNNTV--GLKQMFGQKE 234 (927)
Q Consensus 160 Lrv~L~t~~~sWv~~F~~---~Gl~~Ll~~~l~~ll~~l~~~~~~~~~~~~~~~e~vkCLkaimN~~~--Gl~~vl~~~~ 234 (927)
||..++| .|+..-+. .++-.| +..+ |.+.+.++.++|+.|.|+|.... |+++|| .
T Consensus 216 lka~mNn---~~Gl~~vL~~e~~llll--------a~al------dpr~pnmm~dvvkllsalciV~ee~~~ekvl---~ 275 (1102)
T KOG1924|consen 216 LKAFMNN---KFGLVLVLRRERSLLLL--------ARAL------DPREPNMMTDVVKLLSALCIVGEENGLEKVL---E 275 (1102)
T ss_pred HHHHhcc---ccceeeeecCCccHHHH--------HHhc------CccCccHHHHHHHHHHHHheeehhhHHHHHH---H
Confidence 9999999 99888774 343222 3333 66778899999999999999865 999987 7
Q ss_pred HHHHHHHhcCCCChhHHHHHHHHhhhhcccCCCchHHHHHHHHhhcccccCcChHHHHHHHhccCCCHHHHHHHHHHHHH
Q psy15122 235 ALTIVARSLDPNKPTVMLEAVKVLAAVCLIPPDGHDKVIKAITMSGELKGKERFQPVVQGLMVKGNNEALRTACLQLINA 314 (927)
Q Consensus 235 ~i~~la~sl~~~~~~~~~~vlelLaalc~~~~~Gh~~VL~Al~~~~~~~e~~RF~~lv~~L~~~~~~~~~~~~~m~lIN~ 314 (927)
+|+++|..-...++++.+++|+.+..+.++ -++-.+|+|+++. +-.-.+|.|.+++.++.++...|..
T Consensus 276 aiT~~ae~~~veRF~piv~gl~~~e~~~l~--vacmq~INal~t~----------p~dldfRlhlR~E~mr~gL~~~l~~ 343 (1102)
T KOG1924|consen 276 AITTIAEAKPVERFRPIVEGLDFLEKQQLQ--VACMQFINALVTS----------PSDLDFRLHLRSEFMRDGLHKYLPD 343 (1102)
T ss_pred HHHHHHhhcchhhhhhHHHHHhccchHHHH--HHHHHHHHHhcCC----------HHHhhHHHHHHHHHHHHhHHHHHHH
Confidence 899999998899999999988764322222 1333399999887 5555677788999999999999998
Q ss_pred HH-cCchhHHHHHHHHHHHHHhChHHHHHHHhhcCChhHHHHHHHHhhhhHhHHHHHHHhchhcccccCCHHHHHHHHHH
Q psy15122 315 IV-ATPDDLEFRLHLRNEIMRVGLYDLLDALEKDASEDVSVQLKVFIEHKEEDYYEFIQRFDNVRMEIDDVNDCFETVRN 393 (927)
Q Consensus 315 Lv-~s~~dl~~Ri~lR~Ef~~~GL~eil~~L~~~~~~~L~~ql~~f~~~~~~D~~el~~r~~~~~~d~~~~~~~f~~l~~ 393 (927)
+- ..++++++++.+++|+...+|.++..+|.+ +...+ ...+|+++++... +..
T Consensus 344 l~~i~n~~ldvqlkvfdE~~e~Dl~el~~rled-----ir~em-----Dd~~~~f~lL~n~----------------vkd 397 (1102)
T KOG1924|consen 344 LTEINNDILDVQLKVFDEHKEDDLEELSGRLED-----IRAEM-----DDANEVFELLANT----------------VKD 397 (1102)
T ss_pred hhhhccHHHHHHHHHHhhhhhhhHHHHHhHHHh-----hhhhh-----ccHHHHHHHHHHh----------------hhh
Confidence 84 367899999999999999999999999987 33333 3445666666543 111
Q ss_pred HhhcCCCchhhHHHHHhhhhcccc----------------chhhhhhhhhhhHHHHHHHhhhccchhhHHHHHHHHHHHH
Q psy15122 394 MVMDSACEPYLLSILQHLLFIRDD----------------QNMVMDSACEPYLLSILQHLLFIRDDQYVRLAYYKLLEEC 457 (927)
Q Consensus 394 ~v~~t~a~~~f~sil~~ll~~~~~----------------~~~~~~~~~~p~~lSilQhllli~~d~~~~~~~~~Lid~~ 457 (927)
+-.++.--.. ||||+.+++| |++.|+.+|+|+| .+...+......+||.|
T Consensus 398 T~aE~yfLSI----LQhlllirnDy~~rpqYykLIEecISqIvlHr~~~DPdf----------~yr~~l~id~~~liD~~ 463 (1102)
T KOG1924|consen 398 TGAEPYFLSI----LQHLLLIRNDYYIRPQYYKLIEECISQIVLHRTGMDPDF----------KYRFRLDIDLTELIDKM 463 (1102)
T ss_pred ccccchHHHH----HHHHHHHhhhhhhhHHHHHHHHHHHHHHHHhcCCCCCCc----------chhhcccCcHHHHHHHH
Confidence 1122221222 3777777777 3445566666554 22223345566789999
Q ss_pred HHHHHhccCCCCCCccccccccccchHHHHHHHHhhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy15122 458 VSQIVLHRGGCDPDFRSSRRFQLDVQPLVEHLAEKSKTEEDRRVEDLSAKLEEAIMLRQEAEAKLVQAQK 527 (927)
Q Consensus 458 v~qivl~r~g~d~d~~~~~~~~~dv~~ll~~l~~~~~~~~~k~~~el~~kle~~~~~~qe~ea~~~~le~ 527 (927)
+.+. .++...+++.+...+-+++++.+.+.+.. -|..++|+..++.
T Consensus 464 vdka-----------------------k~eeseqkA~e~~kk~~ke~ta~qe~qae-l~k~e~Ki~~l~a 509 (1102)
T KOG1924|consen 464 VDKA-----------------------KAEESEQKAAELEKKFDKELTARQEAQAE-LQKHEEKIKLLEA 509 (1102)
T ss_pred HHHH-----------------------HHHHHHHHHHHHHHHHHHHHhHHHHHHHH-HHHhhhhcccCch
Confidence 9643 33444444444445556777776665432 2222355554443
No 4
>smart00498 FH2 Formin Homology 2 Domain. FH proteins control rearrangements of the actin cytoskeleton, especially in the context of cytokinesis and cell polarisation. Members of this family have been found to interact with Rho-GTPases, profilin and other actin-assoziated proteins. These interactions are mediated by the proline-rich FH1 domain, usually located in front of FH2 (but not listed in SMART). Despite this cytosolic function, vertebrate formins have been assigned functions within the nucleus. A set of Formin-Binding Proteins (FBPs) has been shown to bind FH1 with their WW domain.
Probab=100.00 E-value=3.5e-43 Score=406.00 Aligned_cols=260 Identities=40% Similarity=0.638 Sum_probs=233.8
Q ss_pred CCccccccccccccccccchhhhhchhHHHHHHHHHHhcccccCCCCCcccceeeecccccccccccCCCCcchhHHHHH
Q psy15122 590 MPEMYTDCHKNIINGKQACEEVKQSKKLAKILELILLMGNYMNSGSRNGGAFGFEINFLTKLSSTKDIENKTTLLHYLVD 669 (927)
Q Consensus 590 lpe~v~~i~~~i~~v~~A~~el~~S~~f~~lL~~IL~iGNymN~gs~~g~A~GFkLssL~KL~dtKs~d~k~TLLh~l~~ 669 (927)
+++.+.+|+++|..+..||++|++|+.|+.||++||++|||||+|+++|+|+||+|+||.||.||||+|+++||||||++
T Consensus 172 f~~~~~~l~~~l~~l~~a~~~l~~S~~l~~lL~~iL~~GN~mN~g~~rg~A~GFkL~sL~KL~d~Ks~d~k~tLLhylv~ 251 (432)
T smart00498 172 FEEEVEDLKPQLEKVEAACEELRESKKFRKLLELILAIGNYMNSGSRRGQAYGFKLSSLLKLSDVKSADNKTTLLHFLVK 251 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHhCcccCCCcCCCcceeeHHHHHHHHhhhccCCCccHHHHHHH
Confidence 45899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhCCccCchhhhhhhHHHhhccCHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCcchhHHHHHhhhHHHHHHHHHH
Q psy15122 670 TIEQKFPECLKFGDELLHVDRAARVSTDVIQNSIRQMENNIKNLETDIQNCKQAPVANENDKFLEIMEPFAKEVRQKITL 749 (927)
Q Consensus 670 ~v~~~~p~ll~f~~eL~~v~~Askvs~~~l~~~~~~L~~~l~~l~~~l~~~~~~~~~~~~D~f~~~m~~F~~~a~~~~~~ 749 (927)
+|++++|++++|.+||++|..|++|| ++|.+++++|.+++..++.++..+..+ ...+|.|..+|.+|+..|..+++.
T Consensus 252 ~i~~~~p~~~~f~~el~~v~~askvs-~~l~~~~~~l~~~~~~~e~~~~~l~~~--~~~~d~f~~~m~~F~~~a~~~~~~ 328 (432)
T smart00498 252 IIRKKYPDLLDFYSDLHHLDKAKVNL-EQLEKDVKQLERQIKNLETDLGGLSDP--ENLDDKFIEVMKPFLKAAKEKYDK 328 (432)
T ss_pred HHHHhChhhccchhhhccHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhcCCC--CCccchHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999 999999999999999999888776655 344699999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHcccCCCCCcccchhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHH
Q psy15122 750 LSNMSKNMMTLYGDLAEFYTFDKNIYTLEEFFTDIKTFKDSFYQAWQENIKLREAEEKSIRVREAREKAENEKK-DKAAR 828 (927)
Q Consensus 750 L~~~~~~~~~~~~~l~~yfgEd~~~~~~eefF~~~~~F~~~f~~a~~en~~~~e~eek~rr~~~akekaerek~-er~~~ 828 (927)
|+..+..+...|.+++.||||++++.++++||++|.+|+..|.+|++||++++++|++ ++.+..++..+.... +++..
T Consensus 329 l~~~~~~~~~~~~~~~~yfge~~~~~~~~efF~~f~~F~~~f~ka~~en~~~~~~e~~-~~~~~~~~~~~~~~~~~~~~~ 407 (432)
T smart00498 329 LQKDLSDLKTRFEKLVEYYGEDPKDTSPEEFFKDFNEFLKEFSKAAEENIKKEEEEEE-RRKQLVKETTEYEQSSSRQKE 407 (432)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhhhhhhhhhhh
Confidence 9999999999999999999999999999999999999999999999999988876653 555556666554432 33333
Q ss_pred hhhhccCCCCCCccchHHHHHHHHh
Q psy15122 829 KKALIDMTTDQTQQGVMDSLLEALQ 853 (927)
Q Consensus 829 kk~~~~~~~~~~~~~v~D~Ll~~Lr 853 (927)
.....++....|..|+||+++.+++
T Consensus 408 ~~~~~~~~~~~d~~~~~d~~~~~~~ 432 (432)
T smart00498 408 RNPSMDFEVERDFLGVLDSLLEELG 432 (432)
T ss_pred ccchhhhhhhhhhhhhHHHHHHhhC
Confidence 3445566667889999999998874
No 5
>PF02181 FH2: Formin Homology 2 Domain; InterPro: IPR015425 Formin homology (FH) proteins play a crucial role in the reorganisation of the actin cytoskeleton, which mediates various functions of the cell cortex including motility, adhesion, and cytokinesis []. Formins are multidomain proteins that interact with diverse signalling molecules and cytoskeletal proteins, although some formins have been assigned functions within the nucleus. Formins are characterised by the presence of three FH domains (FH1, FH2 and FH3), although members of the formin family do not necessarily contain all three domains []. The proline-rich FH1 domain mediates interactions with a variety of proteins, including the actin-binding protein profilin, SH3 (Src homology 3) domain proteins, and WW domain proteins. The FH2 domain is required for the self-association of formin proteins through the ability of FH2 domains to directly bind each other [], and may also act to inhibit actin polymerisation []. The FH3 domain (IPR010472 from INTERPRO) is less well conserved and may be important for determining intracellular localisation of formin family proteins. In addition, some formins can contain a GTPase-binding domain (GBD) (IPR010473 from INTERPRO) required for binding to Rho small GTPases, and a C-terminal conserved Dia-autoregulatory domain (DAD). This entry represents the FH2 domain, which was shown by X-ray crystallography to have an elongated, crescent shape containing three helical subdomains [].; PDB: 1Y64_B 1UX4_A 1UX5_A 3O4X_H 3OBV_E 1V9D_D 2Z6E_B 2J1D_G.
Probab=100.00 E-value=1.7e-35 Score=337.02 Aligned_cols=201 Identities=34% Similarity=0.630 Sum_probs=186.4
Q ss_pred CCccccccccccccccccchhhhhchhHHHHHHHHHHhcccccCCCCCcccceeeecccccccccccCCCCcchhHHHHH
Q psy15122 590 MPEMYTDCHKNIINGKQACEEVKQSKKLAKILELILLMGNYMNSGSRNGGAFGFEINFLTKLSSTKDIENKTTLLHYLVD 669 (927)
Q Consensus 590 lpe~v~~i~~~i~~v~~A~~el~~S~~f~~lL~~IL~iGNymN~gs~~g~A~GFkLssL~KL~dtKs~d~k~TLLh~l~~ 669 (927)
+|+.+.++.+.|..+..||++|++|+.|+.+|++||.+|||||+|+++|+|+||+|+||.||.+|||+|+++||||||++
T Consensus 170 f~~~~~~l~~~l~~l~~a~~~l~~S~~l~~lL~~iL~~GN~lN~g~~~g~A~GF~L~sL~kL~~~Ks~d~~~tLL~~l~~ 249 (370)
T PF02181_consen 170 FEEQLEELKEKLEKLEAACEELRESKSLRRLLEIILAIGNFLNGGTPRGNAKGFKLSSLSKLKDTKSNDNKTTLLHYLVK 249 (370)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHSTCSTTCS-SEE-GGGGGGCCCSB-STTTSBHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHhccCCCccccceecHHhHHHHHhcccccCCchHHHHHHH
Confidence 44889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhCCccCchhhhhhhHHHhhccCHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCcchhHHHHHhhhHHHHHHHHHH
Q psy15122 670 TIEQKFPECLKFGDELLHVDRAARVSTDVIQNSIRQMENNIKNLETDIQNCKQAPVANENDKFLEIMEPFAKEVRQKITL 749 (927)
Q Consensus 670 ~v~~~~p~ll~f~~eL~~v~~Askvs~~~l~~~~~~L~~~l~~l~~~l~~~~~~~~~~~~D~f~~~m~~F~~~a~~~~~~ 749 (927)
++.+++|+++.|.+||++|..|++++++++..++++|++++..++.+++..... .+.+|.|..+|.+|++.+..++..
T Consensus 250 ~~~~~~~~~~~~~~eL~~v~~a~~~~~~~l~~~i~~l~~~~~~~~~~l~~~~~~--~~~~~~f~~~~~~f~~~~~~~~~~ 327 (370)
T PF02181_consen 250 IVEEKFPDLLDLEDELSSVEKASKVSLDELEQDIKELEKGLEKIKKELEAIEKD--EEDDDKFKEKMKEFLEEAETKLDE 327 (370)
T ss_dssp HHHTTSGGGGGHHHHTTTHHHCCTS-HHHHHHHHHHHHHHHHHHHHHHHHCCTT--SSTT-THHHHHHHHHHHHHHHHHH
T ss_pred HHHhcChHHhccHHHHhhHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhcccc--ccchhhhhHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999886653 567889999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHcccCCCCCcccchhccHHHHHHHHH
Q psy15122 750 LSNMSKNMMTLYGDLAEFYTFDKNIYTLEEFFTDIKTFKDSFY 792 (927)
Q Consensus 750 L~~~~~~~~~~~~~l~~yfgEd~~~~~~eefF~~~~~F~~~f~ 792 (927)
|+..+.++++.|.+++.||||+++++++++||++|.+|+..|+
T Consensus 328 l~~~~~~~~~~~~~~~~yfge~~~~~~~~~ff~~l~~F~~~fk 370 (370)
T PF02181_consen 328 LQELYEELEEAFKQLLQYFGEDPKKMSPEEFFKILSQFIDMFK 370 (370)
T ss_dssp HHHHHHHHHHHHHHHHHHTT--TTCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHhC
Confidence 9999999999999999999999999999999999999999996
No 6
>PF06367 Drf_FH3: Diaphanous FH3 Domain; InterPro: IPR010472 Formin homology (FH) proteins play a crucial role in the reorganisation of the actin cytoskeleton, which mediates various functions of the cell cortex including motility, adhesion, and cytokinesis []. Formins are multidomain proteins that interact with diverse signalling molecules and cytoskeletal proteins, although some formins have been assigned functions within the nucleus. Formins are characterised by the presence of three FH domains (FH1, FH2 and FH3), although members of the formin family do not necessarily contain all three domains []. The proline-rich FH1 domain mediates interactions with a variety of proteins, including the actin-binding protein profilin, SH3 (Src homology 3) domain proteins, and WW domain proteins. The FH2 domain (IPR003104 from INTERPRO) is required to inhibit actin polymerisation. The FH3 domain is less well conserved and is required for directing formins to the correct intracellular location, such the mitotic spindle [], or the projection tip during conjugation []. In addition, some formins can contain a GTPase-binding domain (GBD) (IPR010473 from INTERPRO) required for binding to Rho small GTPases, and a C-terminal conserved Dia-autoregulatory domain (DAD). This entry represents the FH3 domain.; GO: 0003779 actin binding, 0016043 cellular component organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.
Probab=99.97 E-value=3.1e-31 Score=275.80 Aligned_cols=195 Identities=41% Similarity=0.711 Sum_probs=173.6
Q ss_pred CchHHHHHHHHhhccc-ccCcChHHHHHHHhc-cCCCHHHHHHHHHHHHHHHcCchhHHHHHHHHHHHHHhChHHHHHHH
Q psy15122 267 DGHDKVIKAITMSGEL-KGKERFQPVVQGLMV-KGNNEALRTACLQLINAIVATPDDLEFRLHLRNEIMRVGLYDLLDAL 344 (927)
Q Consensus 267 ~Gh~~VL~Al~~~~~~-~e~~RF~~lv~~L~~-~~~~~~~~~~~m~lIN~Lv~s~~dl~~Ri~lR~Ef~~~GL~eil~~L 344 (927)
|||.+||+||++++.. +++.||++||..|.. ...+.+|+++||.|||+||++++|+++|+|||+||..+||.+++++|
T Consensus 1 ~G~~~vl~a~~~~~~~~~e~~RF~~lv~~l~~~~~~~~e~~~~~l~~IN~li~~~~d~~~R~~lr~e~~~~GL~~il~~l 80 (197)
T PF06367_consen 1 GGHEKVLEAFDNFKEVKGERGRFQSLVGALESVDSSDIEYKTACLQFINSLINSPEDLNFRVHLRNEFERLGLLDILEKL 80 (197)
T ss_dssp -HHHHHHHHHHHHHHHHT-S-TTHHHHHHCS--TTS-HHHHHHHHHHHHHHHTT-SSHHHHHHHHHHHHHTTHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHhCCcccHHHHHHHHHccccCcHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCcHHHHHHH
Confidence 6999999999999987 789999999999954 67889999999999999999999999999999999999999999999
Q ss_pred hhcCChhHHHHHHHHhhhhHhHHHHHHHhchhcccccCCHHHHHHHHHHHhhcCCCchhhHHHHHhhhhccccchhhhhh
Q psy15122 345 EKDASEDVSVQLKVFIEHKEEDYYEFIQRFDNVRMEIDDVNDCFETVRNMVMDSACEPYLLSILQHLLFIRDDQNMVMDS 424 (927)
Q Consensus 345 ~~~~~~~L~~ql~~f~~~~~~D~~el~~r~~~~~~d~~~~~~~f~~l~~~v~~t~a~~~f~sil~~ll~~~~~~~~~~~~ 424 (927)
+...++.|..||++|++...+|++++.++++....+++++.+||..|.+.+.+|+++.||
T Consensus 81 ~~~~~~~L~~Qi~~f~~~~~~D~~el~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~-------------------- 140 (197)
T PF06367_consen 81 RNLEDDDLQEQIDIFEENEEEDEEELLERFDSKTVDLSDPQELFEALLEKLKDTEAEDYF-------------------- 140 (197)
T ss_dssp TTS--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSHHHHHHHHHHHHTTSTTHHHH--------------------
T ss_pred HhcchHHHHHHHHHHHHHHHhhHHHHHHhhcccccccccHHHHHHHHHHHHhCcccHHHH--------------------
Confidence 999999999999999999999999999999989999999999999999999999999999
Q ss_pred hhhhhHHHHHHHhhhccchhhHHHHHHHHHHHHHHHHHhccCCCCCCccccccccccchHHHH
Q psy15122 425 ACEPYLLSILQHLLFIRDDQYVRLAYYKLLEECVSQIVLHRGGCDPDFRSSRRFQLDVQPLVE 487 (927)
Q Consensus 425 ~~~p~~lSilQhllli~~d~~~~~~~~~Lid~~v~qivl~r~g~d~d~~~~~~~~~dv~~ll~ 487 (927)
+|++||++.++.+...+.+||++|+++|+||++++.+.|+++.....+.+++..|++
T Consensus 141 ------~siLq~ll~i~~~~~~~~~~~~lie~~v~~i~~~~~~~~~~~~~~~~l~~~i~~L~d 197 (197)
T PF06367_consen 141 ------LSILQHLLLIRQDEEERSKYWQLIESLVSQIVLDRKGIDPDDDEQSSLEIDINRLLD 197 (197)
T ss_dssp ------HHHHHHHTTS-TTTTTHHHHHHHHHHHHHHHHSSGGGS-S-TTSS-EEEEEHSCSHH
T ss_pred ------HHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHhccccCchHHHhhhHHHHHHHhcC
Confidence 899999999877888889999999999999999999999988767788888877654
No 7
>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []. Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.
Probab=99.96 E-value=9.5e-30 Score=262.16 Aligned_cols=177 Identities=28% Similarity=0.520 Sum_probs=134.8
Q ss_pred CCHHHHHHHHHHHHHhCCCChhhhhhhhCCChHhHHHHHHHHHhcccccc-------ccccCCCChHHHHHHhcCCccch
Q psy15122 78 LNPEQLNQKFEDMLNDMNLSDEKKEPLRRQPLANKKKMLLMHYKGTVTSY-------ENKSKFDKPIEYIQYLSQPELSV 150 (927)
Q Consensus 78 ~~~~ei~~~F~~lle~lnl~~~k~~~L~~~p~~~K~~li~~~~~~~~~~~-------~~~~~~~~P~~~i~~L~~~~~~~ 150 (927)
+++++|+++|+++|++||+++++|+.|+++|.++||+||++|........ .......+|++||+.|+++..+.
T Consensus 3 p~~~~v~~~F~~ll~~~~~~~~~r~~l~~~~~ekKw~li~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~i~~L~~~~~~~ 82 (187)
T PF06371_consen 3 PSEEEVDEMFEELLEELNLPEEKRKELRNLPPEKKWQLIQQHRQKQAKHSSSSSKSKSKASAKSSPEWYIKKLKSRPSTS 82 (187)
T ss_dssp ------HHHHHHHHHHTT--HHHHHHHHTS-HHHHHHHHHHHHHH-----------------CHHHHHHHHHHTTT--HH
T ss_pred CCHHHHHHHHHHHHHhcCCCHHHHHHHHCCCHHHHHHHHHhHHHhccccchhhhhhhhhhhhhhhHHHHHHHHHccCccH
Confidence 47899999999999999999999999999999999999999988654111 12345679999999998876543
Q ss_pred hhhhhhHHHHHHHhccCCchhHHHHh-hhhhhhhhhcchhhhcCcCCCCCCCcchhhHHHHHHHHHHHHHHhcHhhHHHH
Q psy15122 151 NKMYSCIESLRIALTNHPLSWVNEFV-LQDNKNFRKYPIAFLYPRFPSRSRNDSRYDRVQYECVRCIRAIMNNTVGLKQM 229 (927)
Q Consensus 151 ~~~~~~l~~Lrv~L~t~~~sWv~~F~-~~Gl~~Ll~~~l~~ll~~l~~~~~~~~~~~~~~~e~vkCLkaimN~~~Gl~~v 229 (927)
+.|.+|+|+|||++++||++|+ .+|+..|+++ |..+... ......+...+++|++|||||||+++|+..|
T Consensus 83 ----~~L~~L~v~Lrt~~~~Wv~~Fl~~~G~~~L~~~-L~~~~~~----~~~~~~~~~~~~~~l~Clkal~n~~~G~~~v 153 (187)
T PF06371_consen 83 ----KILKSLRVSLRTNPISWVQEFLELGGLEALLNV-LSKLNKK----KEKSEEDIDIEHECLRCLKALMNTKYGLEAV 153 (187)
T ss_dssp ----HHHHHHHHHHHHS-HHHHHHH-HHHHHHHHHHH-HHHHHTH----HCTCTTCHHHHHHHHHHHHHHTSSHHHHHHH
T ss_pred ----HHHHHHHHHhccCCchHHHHhccCCCHHHHHHH-HHHhhhh----hhhcchhHHHHHHHHHHHHHHHccHHHHHHH
Confidence 5799999999999999999998 5899999885 3333221 1122345678999999999999999999999
Q ss_pred hcchhHHHHHHHhcCCCChhHHHHHHHHhhhhcc
Q psy15122 230 FGQKEALTIVARSLDPNKPTVMLEAVKVLAAVCL 263 (927)
Q Consensus 230 l~~~~~i~~la~sl~~~~~~~~~~vlelLaalc~ 263 (927)
+.++++|..|+.|+++++++++.+|+|+|+++|+
T Consensus 154 ~~~~~~v~~i~~~L~s~~~~~r~~~leiL~~lc~ 187 (187)
T PF06371_consen 154 LSHPDSVNLIALSLDSPNIKTRKLALEILAALCL 187 (187)
T ss_dssp HCSSSHHHHHHHT--TTSHHHHHHHHHHHHHHHT
T ss_pred HcCcHHHHHHHHHHCCCCHHHHHHHHHHHHHHHC
Confidence 9999999999999999999999999999999996
No 8
>KOG1925|consensus
Probab=99.92 E-value=2.2e-24 Score=234.94 Aligned_cols=201 Identities=18% Similarity=0.361 Sum_probs=180.6
Q ss_pred cccccccccccccchhhhhchhHHHHHHHHHHhcccccCCCCCcccceeeecccccccccccCCCCcchhHHHHHHHHhh
Q psy15122 595 TDCHKNIINGKQACEEVKQSKKLAKILELILLMGNYMNSGSRNGGAFGFEINFLTKLSSTKDIENKTTLLHYLVDTIEQK 674 (927)
Q Consensus 595 ~~i~~~i~~v~~A~~el~~S~~f~~lL~~IL~iGNymN~gs~~g~A~GFkLssL~KL~dtKs~d~k~TLLh~l~~~v~~~ 674 (927)
.+|..-|-.+..|.+++-+|..|+-+|..+|+||||+|+. ++.||.|++|.|..++|++-.|.||||+++.++.++
T Consensus 451 KeiAEPL~Dlk~gm~qlE~n~Tf~~il~tLLAIGNfLnGT----~~KgFeLsYLeKvsEVKDtV~KqsLlhHlc~~vVE~ 526 (817)
T KOG1925|consen 451 KEIAEPLFDLKVGMEQLEQNATFRCILATLLAIGNFLNGT----QSKGFELSYLEKVSEVKDTVRKQSLLHHLCSLVVET 526 (817)
T ss_pred HHhhhHHHHHHHHHHHHHhcchHHHHHHHHHHHhccccCc----cccceehHhhhhchhhcchHHHHHHHHHHHHHHHHh
Confidence 3455556668889999999999999999999999999973 789999999999999999999999999999999999
Q ss_pred CCccCchhhhhhhHHHhhccCHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCcchhHHHHHhhhHHHHHHHHHHHHHHH
Q psy15122 675 FPECLKFGDELLHVDRAARVSTDVIQNSIRQMENNIKNLETDIQNCKQAPVANENDKFLEIMEPFAKEVRQKITLLSNMS 754 (927)
Q Consensus 675 ~p~ll~f~~eL~~v~~Askvs~~~l~~~~~~L~~~l~~l~~~l~~~~~~~~~~~~D~f~~~m~~F~~~a~~~~~~L~~~~ 754 (927)
||+-.+++.|+..|...+||+++++..++-+|++.++.-+..|....+. .-...+...|..|+.++.+++..|+.-+
T Consensus 527 FpessDLYSEiGA~tRSAkVDf~qL~DNL~qlErrCKaSWe~L~~Iakh---e~~p~l~~r~~~fl~~cA~RI~~LKivh 603 (817)
T KOG1925|consen 527 FPESSDLYSEIGALTRSAKVDFEQLTDNLGQLERRCKASWESLRSIAKH---ELAPALRARLTHFLDQCARRIAMLKIVH 603 (817)
T ss_pred CCcchhHHHHhHhhhhhhhccHHHHHHHHHHHHHHhhHHHHHHHHHHhh---hccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999988888765332 1233478899999999999999999999
Q ss_pred HHHHHHHHHHHHHcccCCCC---CcccchhccHHHHHHHHHHHHHHHHHHH
Q psy15122 755 KNMMTLYGDLAEFYTFDKNI---YTLEEFFTDIKTFKDSFYQAWQENIKLR 802 (927)
Q Consensus 755 ~~~~~~~~~l~~yfgEd~~~---~~~eefF~~~~~F~~~f~~a~~en~~~~ 802 (927)
..+.+.|.+++-|||..+.. .+++.||.++.+|.-.|...++.+.+++
T Consensus 604 rr~~NRfHSFLLy~Gy~p~aIrev~iN~fc~~~~EFaLEYRTTRervLQQ~ 654 (817)
T KOG1925|consen 604 RRVCNRFHSFLLYLGYTPQAIREVRINQFCHTLREFALEYRTTRERVLQQQ 654 (817)
T ss_pred HHHHHHHHHHHHHcCCChhhhhhcCHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 99999999999999998764 4799999999999999999987776643
No 9
>KOG1922|consensus
Probab=99.91 E-value=1.7e-23 Score=261.47 Aligned_cols=213 Identities=29% Similarity=0.466 Sum_probs=191.6
Q ss_pred ccccccccccccccccchhhhhchhHHHHHHHHHHhcccccCCCCCcccceeeecccccccccccCCCCcchhHH-HHHH
Q psy15122 592 EMYTDCHKNIINGKQACEEVKQSKKLAKILELILLMGNYMNSGSRNGGAFGFEINFLTKLSSTKDIENKTTLLHY-LVDT 670 (927)
Q Consensus 592 e~v~~i~~~i~~v~~A~~el~~S~~f~~lL~~IL~iGNymN~gs~~g~A~GFkLssL~KL~dtKs~d~k~TLLh~-l~~~ 670 (927)
+.+..+.+.+..+..||.++++|..|.+++++||..|||||.|+.+|+|+||+|.+|.||.|+|+.++++++||+ +.++
T Consensus 563 ~~v~~l~~~~~~~~~~~~~l~~~~~~~~~~e~il~~Gn~mN~g~~rg~a~~f~l~~l~kl~d~ks~~~~~~~l~~~~~e~ 642 (833)
T KOG1922|consen 563 EEVTALKKKLETVEVASKELLESKKFLKILEIILAAGNRMNAGTNRGSAHGFKLDALLKLSDVKSSDGKTTLLHFVVPEV 642 (833)
T ss_pred chHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcccccccccccccchhhHHHHhhhhhhhcccccchhhhhhHHHH
Confidence 567788889999999999999999999999999999999999999999999999999999999999999765555 4455
Q ss_pred HHhhC---------------CccCchhhhhhhHHHhhccCHHHHHHHHHHHHHHHHHHHHHHh-hhccCCCCCcchhHHH
Q psy15122 671 IEQKF---------------PECLKFGDELLHVDRAARVSTDVIQNSIRQMENNIKNLETDIQ-NCKQAPVANENDKFLE 734 (927)
Q Consensus 671 v~~~~---------------p~ll~f~~eL~~v~~Askvs~~~l~~~~~~L~~~l~~l~~~l~-~~~~~~~~~~~D~f~~ 734 (927)
++... |.+.+|.+||..|..|++++++.+.+++..|.+++..+.+.+. ...... .+..|.|..
T Consensus 643 ~~~~~~r~~~~~~~~~~~~~~~~~~~~~~l~~v~~aa~i~~~~l~~~~~~l~~~~~~~~~~l~~~~~~~~-~~~~~~f~~ 721 (833)
T KOG1922|consen 643 VRSEGKRSVIDVEKSRRLGLPSLLKFLSDLSNVESAAKIDLEVLAEECSDLKKGLEKVKRELPTASKNES-LPPGDPFSK 721 (833)
T ss_pred HHhhccccchhhhhhhhccchhhhcccchhcccchhhccCHHHHHHHHHHHHHHHHHHHHHhhhhhcCCC-CCccchhhh
Confidence 55444 4779999999999999999999999999999999999999995 432221 457889999
Q ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCC-CCCcccchhccHHHHHHHHHHHHHHHHHHHHHH
Q psy15122 735 IMEPFAKEVRQKITLLSNMSKNMMTLYGDLAEFYTFDK-NIYTLEEFFTDIKTFKDSFYQAWQENIKLREAE 805 (927)
Q Consensus 735 ~m~~F~~~a~~~~~~L~~~~~~~~~~~~~l~~yfgEd~-~~~~~eefF~~~~~F~~~f~~a~~en~~~~e~e 805 (927)
+|..|+..|..++..+...+..+...+..+++|||+++ ...++.+||.++..|+..|.++++|+.+.++++
T Consensus 722 ~~~~fl~~ae~ev~~l~~~~~~~~~~~~~~~~yf~~~~~~~~~~~~~f~~~r~fl~~~~~~~~e~~~~~~k~ 793 (833)
T KOG1922|consen 722 VKKEFLSSAEKEVKLLISEEREVRESVKKTAKYFGEDPKEEITPEQVFSILRDFLRTFDKAHEENKKAEEKE 793 (833)
T ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999 577899999999999999999999998877654
No 10
>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []. Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.
Probab=98.54 E-value=3e-08 Score=102.20 Aligned_cols=138 Identities=20% Similarity=0.353 Sum_probs=79.0
Q ss_pred CCHHHHHHHHHHhhccCCCCcccccccccCchhhhhhhhhhccccccccc------------cccchhhhccCCCHHHHH
Q psy15122 17 LNPEQLNQKFEDMLNDMNLSDEKKEPLRRQPLANKKKMLLMHYKGTVTSY------------ENKKQENMLEKLNPEQLN 84 (927)
Q Consensus 17 ~~~~~~~~~f~~~~~~~n~~~~~~~~~~~~~~~~K~~m~~~~~~~~~~~~------------~~~~~~~~~~~~~~~ei~ 84 (927)
.++++|+++|+++|++||+++++|++++..|..+|+.|+.+|........ ..+|..|+....+..- .
T Consensus 3 p~~~~v~~~F~~ll~~~~~~~~~r~~l~~~~~ekKw~li~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~i~~L~~~~~-~ 81 (187)
T PF06371_consen 3 PSEEEVDEMFEELLEELNLPEEKRKELRNLPPEKKWQLIQQHRQKQAKHSSSSSKSKSKASAKSSPEWYIKKLKSRPS-T 81 (187)
T ss_dssp ------HHHHHHHHHHTT--HHHHHHHHTS-HHHHHHHHHHHHHH-----------------CHHHHHHHHHHTTT---H
T ss_pred CCHHHHHHHHHHHHHhcCCCHHHHHHHHCCCHHHHHHHHHhHHHhccccchhhhhhhhhhhhhhhHHHHHHHHHccCc-c
Confidence 58999999999999999999999999999999999999988887632111 1122222222211111 1
Q ss_pred HHHHHHHHhCCCChhhhhhhhCCChHhHHHHHHHHHhcccccccccc-CCCChHHHHHHhcC-------Cccchhhhhhh
Q psy15122 85 QKFEDMLNDMNLSDEKKEPLRRQPLANKKKMLLMHYKGTVTSYENKS-KFDKPIEYIQYLSQ-------PELSVNKMYSC 156 (927)
Q Consensus 85 ~~F~~lle~lnl~~~k~~~L~~~p~~~K~~li~~~~~~~~~~~~~~~-~~~~P~~~i~~L~~-------~~~~~~~~~~~ 156 (927)
.+.|.++.+. |+..+. +|...| ...|...++..|.. ........++|
T Consensus 82 ---~~~L~~L~v~------Lrt~~~----------------~Wv~~Fl~~~G~~~L~~~L~~~~~~~~~~~~~~~~~~~~ 136 (187)
T PF06371_consen 82 ---SKILKSLRVS------LRTNPI----------------SWVQEFLELGGLEALLNVLSKLNKKKEKSEEDIDIEHEC 136 (187)
T ss_dssp ---HHHHHHHHHH------HHHS-H----------------HHHHHH-HHHHHHHHHHHHHHHHTHHCTCTTCHHHHHHH
T ss_pred ---HHHHHHHHHH------hccCCc----------------hHHHHhccCCCHHHHHHHHHHhhhhhhhcchhHHHHHHH
Confidence 1555555444 666666 555444 23445555554421 11123467899
Q ss_pred HHHHHHHhccCCchhHHHHhh---hhhhhh
Q psy15122 157 IESLRIALTNHPLSWVNEFVL---QDNKNF 183 (927)
Q Consensus 157 l~~Lrv~L~t~~~sWv~~F~~---~Gl~~L 183 (927)
|+|||+.+++ .++.+.+. +++..|
T Consensus 137 l~Clkal~n~---~~G~~~v~~~~~~v~~i 163 (187)
T PF06371_consen 137 LRCLKALMNT---KYGLEAVLSHPDSVNLI 163 (187)
T ss_dssp HHHHHHHTSS---HHHHHHHHCSSSHHHHH
T ss_pred HHHHHHHHcc---HHHHHHHHcCcHHHHHH
Confidence 9999999999 78777763 344444
No 11
>PF11841 DUF3361: Domain of unknown function (DUF3361)
Probab=96.72 E-value=0.02 Score=57.15 Aligned_cols=145 Identities=13% Similarity=0.238 Sum_probs=96.8
Q ss_pred chhHHHHh-hhhhhhhhhcchhhhcCcCCCCCCCcchhhHHHHHHHHHHHHHHhcHh-hHHHHhcchhHHHHHHHhcCCC
Q psy15122 169 LSWVNEFV-LQDNKNFRKYPIAFLYPRFPSRSRNDSRYDRVQYECVRCIRAIMNNTV-GLKQMFGQKEALTIVARSLDPN 246 (927)
Q Consensus 169 ~sWv~~F~-~~Gl~~Ll~~~l~~ll~~l~~~~~~~~~~~~~~~e~vkCLkaimN~~~-Gl~~vl~~~~~i~~la~sl~~~ 246 (927)
++|-.+|+ .+|+..|+.+ .+.- .. .+.-...+..-++.|+--+|.... ||+.+ .+..|..+|..++..
T Consensus 1 ~TFA~EFI~~~Gl~~L~~~-----iE~g--~~-~~~~~~~~La~~L~af~eLMeHg~vsWd~l--~~~FI~Kia~~Vn~~ 70 (160)
T PF11841_consen 1 VTFAQEFISRDGLTLLIKM-----IEEG--TE-IQPCKGEILAYALTAFVELMEHGIVSWDTL--SDSFIKKIASYVNSS 70 (160)
T ss_pred CchHHHHHhccCHHHHHHH-----HHcC--Cc-cCcchHHHHHHHHHHHHHHHhcCcCchhhc--cHHHHHHHHHHHccc
Confidence 46778999 4899998874 3321 00 011123556778999999999866 88754 568899999887644
Q ss_pred C--hhHHHHHHHHhhhhcccCCCchHHHHHHHHhhcccccCcChHHHHHHHhccCCCHHHHHHHHHHHHHHHcCchhHHH
Q psy15122 247 K--PTVMLEAVKVLAAVCLIPPDGHDKVIKAITMSGELKGKERFQPVVQGLMVKGNNEALRTACLQLINAIVATPDDLEF 324 (927)
Q Consensus 247 ~--~~~~~~vlelLaalc~~~~~Gh~~VL~Al~~~~~~~e~~RF~~lv~~L~~~~~~~~~~~~~m~lIN~Lv~s~~dl~~ 324 (927)
. ..+...++.+|=.+++-++.+|..|-+ .-.+..++..| ...+.+++..+|.+||+|....+|- -
T Consensus 71 ~~d~~i~q~sLaILEs~Vl~S~~ly~~V~~----------evt~~~Li~hL--q~~~~~iq~naiaLinAL~~kA~~~-~ 137 (160)
T PF11841_consen 71 AMDASILQRSLAILESIVLNSPKLYQLVEQ----------EVTLESLIRHL--QVSNQEIQTNAIALINALFLKADDS-K 137 (160)
T ss_pred cccchHHHHHHHHHHHHHhCCHHHHHHHhc----------cCCHHHHHHHH--HcCCHHHHHHHHHHHHHHHhcCChH-H
Confidence 4 445555777776666655445555543 34566888888 4488999999999999998776653 3
Q ss_pred HHHHHHHHHHhC
Q psy15122 325 RLHLRNEIMRVG 336 (927)
Q Consensus 325 Ri~lR~Ef~~~G 336 (927)
|-.+..-|..-.
T Consensus 138 r~~i~~~l~~k~ 149 (160)
T PF11841_consen 138 RKEIAETLSQKQ 149 (160)
T ss_pred HHHHHHHHHHHH
Confidence 334444444433
No 12
>PF06345 Drf_DAD: DRF Autoregulatory Domain; InterPro: IPR010465 This domain is found in Diaphanous-related formins (Drfs). It binds the N-terminal GTPase-binding domain; this link is broken when GTP-bound Rho binds to the GBD and activates the protein. The addition of diaphanous activating domains (DAD) to mammalian cells induces actin filament formation, stabilises microtubules, and activates serum-response mediated transcription [].; PDB: 3O4X_H 3OBV_E 2BAP_C 2F31_B.
Probab=96.39 E-value=0.0021 Score=36.64 Aligned_cols=13 Identities=100% Similarity=1.306 Sum_probs=11.3
Q ss_pred chHHHHHHHHhcC
Q psy15122 843 GVMDSLLEALQTG 855 (927)
Q Consensus 843 ~v~D~Ll~~Lrsg 855 (927)
||||+||++|++|
T Consensus 1 gvmdsllealqtg 13 (15)
T PF06345_consen 1 GVMDSLLEALQTG 13 (15)
T ss_dssp -HHHHHHHHHHHS
T ss_pred CcHHHHHHHHHcc
Confidence 7999999999994
No 13
>KOG1923|consensus
Probab=95.17 E-value=0.033 Score=66.58 Aligned_cols=145 Identities=23% Similarity=0.339 Sum_probs=136.6
Q ss_pred HHHHHhcHhhHHHHhcchhHHHHHHHhcCCCChhHHHHHHHHhhhhcccCCCchHHHHHHHHhhccc-ccCcChHHHHHH
Q psy15122 216 IRAIMNNTVGLKQMFGQKEALTIVARSLDPNKPTVMLEAVKVLAAVCLIPPDGHDKVIKAITMSGEL-KGKERFQPVVQG 294 (927)
Q Consensus 216 LkaimN~~~Gl~~vl~~~~~i~~la~sl~~~~~~~~~~vlelLaalc~~~~~Gh~~VL~Al~~~~~~-~e~~RF~~lv~~ 294 (927)
|+++|||.+|+..|..|+.+++++|.++.+.+.+|++.|+++|++||++- |||+.++.|+..|+.+ .|..||++++..
T Consensus 1 laas~~~~~g~~~v~s~p~A~~~ia~S~~~~n~rtktsvl~~lasic~v~-gg~E~~~~a~~~f~~v~qe~~rf~~lm~~ 79 (830)
T KOG1923|consen 1 LAASMNNKAGFGQVGSVPPAIACIANSSKHTNLRTKTSVLGSLASICYVI-GGSEQSWPAAPVFSKVNQEPRRFNTLMYV 79 (830)
T ss_pred CCcccccccccCCCCCCchHHHHhhHhhccCCcchHHHHHHHHHHHHHHh-cCceeecccCcchhhhhcCcccccccccc
Confidence 57899999999999999999999999999999999999999999999997 9999999999999987 789999999998
Q ss_pred Hh-ccCCCHHHHHHHHHHHHHHHcCchhHHHHHHHHHHHHHhChHHHHHHHhhcCChhHHHHHHHHhhh
Q psy15122 295 LM-VKGNNEALRTACLQLINAIVATPDDLEFRLHLRNEIMRVGLYDLLDALEKDASEDVSVQLKVFIEH 362 (927)
Q Consensus 295 L~-~~~~~~~~~~~~m~lIN~Lv~s~~dl~~Ri~lR~Ef~~~GL~eil~~L~~~~~~~L~~ql~~f~~~ 362 (927)
+. ....|.++.++||+|+|.+++ .+|+++|+|+++||..+||+.+++.+...+.+.+..|+..|.++
T Consensus 80 ~s~~~~fn~df~~a~lQf~~ifv~-v~d~n~rvhlQye~t~lgld~yi~~~~e~ese~l~~Q~~sy~dn 147 (830)
T KOG1923|consen 80 HSLPPFFNADFSAAKLQFYDVFVG-VPDENFRVHLQYEATHLGLDKYIDAPPENESEELQRQFQSYTDN 147 (830)
T ss_pred ccCccccChHHHHHHHHHHHHHhc-chhhhhHHHhhhHHHHHhhhhhhhcchhhhhHHHHHHHHHHhhh
Confidence 84 235899999999999999999 99999999999999999999999999999999999999888754
No 14
>KOG0212|consensus
Probab=92.77 E-value=8.7 Score=45.43 Aligned_cols=150 Identities=18% Similarity=0.277 Sum_probs=82.2
Q ss_pred HHHHHHhcCCCChhHHHHHHHHhhhhcccCCC-chHHHHHH-HHhhccc--ccCcChHHHHHHH----------------
Q psy15122 236 LTIVARSLDPNKPTVMLEAVKVLAAVCLIPPD-GHDKVIKA-ITMSGEL--KGKERFQPVVQGL---------------- 295 (927)
Q Consensus 236 i~~la~sl~~~~~~~~~~vlelLaalc~~~~~-Gh~~VL~A-l~~~~~~--~e~~RF~~lv~~L---------------- 295 (927)
..++-.+++-+.--+...+|++|+.+|.-+.. |+.+++.. ++.|++- --..|=..|+.-|
T Consensus 379 f~tLL~tLsd~sd~vvl~~L~lla~i~~s~~~~~~~~fl~sLL~~f~e~~~~l~~Rg~lIIRqlC~lL~aE~IYr~~a~I 458 (675)
T KOG0212|consen 379 FLTLLKTLSDRSDEVVLLALSLLASICSSSNSPNLRKFLLSLLEMFKEDTKLLEVRGNLIIRQLCLLLNAERIYRSIADI 458 (675)
T ss_pred HHHHHHhhcCchhHHHHHHHHHHHHHhcCcccccHHHHHHHHHHHHhhhhHHHHhhhhHHHHHHHHHhCHHHHHHHHHHH
Confidence 44455566555556677789999999998755 76666666 4666642 1122222233321
Q ss_pred hccCCCHHHHHHHHHHHHHHH-cCchhHHHHHHHHHHHHHhChHHHHHHHhh--cCChhHHHHHHHHhhhhHhHHHHHHH
Q psy15122 296 MVKGNNEALRTACLQLINAIV-ATPDDLEFRLHLRNEIMRVGLYDLLDALEK--DASEDVSVQLKVFIEHKEEDYYEFIQ 372 (927)
Q Consensus 296 ~~~~~~~~~~~~~m~lIN~Lv-~s~~dl~~Ri~lR~Ef~~~GL~eil~~L~~--~~~~~L~~ql~~f~~~~~~D~~el~~ 372 (927)
....+|..|.....+.+|.++ .++|=.+.|-.||+- ....-.+++.-|=. +.++.=..-+...-++ .+--..+..
T Consensus 459 Le~e~nl~FAstMV~~Ln~iLlTStELf~LR~~Lk~l-sn~es~~lF~cLy~sWchnPva~~SLClLtQn-YqhA~~liq 536 (675)
T KOG0212|consen 459 LEREENLKFASTMVQALNTILLTSTELFQLRNKLKDL-SNEESQNLFCCLYRSWCHNPVATLSLCLLTQN-YQHAYDLIQ 536 (675)
T ss_pred HhccccchHHHHHHHHHHhhhcccHHHHHHHHHHHhc-cChhhhHHHHHHHHHHcCCcHHHHHHHHHHHH-HHHHHHHHH
Confidence 134678889988899999885 555645555444432 12333444444422 4555433333332222 222334555
Q ss_pred hchhcccccCCHHHH
Q psy15122 373 RFDNVRMEIDDVNDC 387 (927)
Q Consensus 373 r~~~~~~d~~~~~~~ 387 (927)
.|.++.+.++...++
T Consensus 537 ~fa~~eitvd~L~el 551 (675)
T KOG0212|consen 537 LFADVEITVDFLVEL 551 (675)
T ss_pred HHhhhhhhHHHHHHH
Confidence 666666666655543
No 15
>KOG2391|consensus
Probab=92.18 E-value=6.6 Score=43.54 Aligned_cols=15 Identities=27% Similarity=0.521 Sum_probs=6.7
Q ss_pred HHHHHHHHHHHHccc
Q psy15122 756 NMMTLYGDLAEFYTF 770 (927)
Q Consensus 756 ~~~~~~~~l~~yfgE 770 (927)
.+.-+++.+++-|..
T Consensus 297 ~~~~l~kq~l~~~A~ 311 (365)
T KOG2391|consen 297 CTAPLYKQILECYAL 311 (365)
T ss_pred ccchHHHHHHHhhhh
Confidence 333444444444443
No 16
>PHA03247 large tegument protein UL36; Provisional
Probab=91.15 E-value=0.35 Score=65.01 Aligned_cols=47 Identities=13% Similarity=0.167 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHhcHhhHHHHhcchhHHHHHHHhcCCC---ChhHHHHHHHH
Q psy15122 209 QYECVRCIRAIMNNTVGLKQMFGQKEALTIVARSLDPN---KPTVMLEAVKV 257 (927)
Q Consensus 209 ~~e~vkCLkaimN~~~Gl~~vl~~~~~i~~la~sl~~~---~~~~~~~vlel 257 (927)
....+..+.-||+-..|+++... +...+.++..-++ ...++..+-||
T Consensus 1993 tvaA~~vl~eI~~LRl~~~~A~~--~gF~~F~rFVRHr~~dW~~s~~AaaEi 2042 (3151)
T PHA03247 1993 TLAAMCTVPLITRLQLALSDAQG--AGFRLFGRFVRHRQPAWRDSMAAAAEL 2042 (3151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh--hchhhhhHhhhcCCCCchHHHHHHHHH
Confidence 45566667777777777777632 3444444433333 23344445555
No 17
>KOG4849|consensus
Probab=90.98 E-value=0.39 Score=52.58 Aligned_cols=23 Identities=26% Similarity=0.120 Sum_probs=15.1
Q ss_pred cccccccccccccccchhhhhch
Q psy15122 593 MYTDCHKNIINGKQACEEVKQSK 615 (927)
Q Consensus 593 ~v~~i~~~i~~v~~A~~el~~S~ 615 (927)
.+-+++..|+++..|+.-||+|+
T Consensus 385 SaGDy~~AiETllTAI~lIKqSr 407 (498)
T KOG4849|consen 385 SAGDYKGAIETLLTAIQLIKQSR 407 (498)
T ss_pred ccccchhHHHHHHHHHHHHHhhc
Confidence 35566666777777777776663
No 18
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=89.47 E-value=1.9 Score=50.31 Aligned_cols=47 Identities=13% Similarity=0.160 Sum_probs=24.6
Q ss_pred HHHHHHhhh-hhHhHHHHHHHHHHHHHHHH-------HHHHHHHHHHHhhhhhcc
Q psy15122 486 VEHLAEKSK-TEEDRRVEDLSAKLEEAIML-------RQEAEAKLVQAQKTLEDL 532 (927)
Q Consensus 486 l~~l~~~~~-~~~~k~~~el~~kle~~~~~-------~qe~ea~~~~le~~i~~l 532 (927)
++..+++.+ ++.+.+.++|+++|++.... .+..++++.+++..+..|
T Consensus 62 FddkVnqSALteqQ~kasELEKqLaaLrqElq~~saq~~dle~KIkeLEaE~~~L 116 (475)
T PRK13729 62 FDDKVRQHATTEMQVTAAQMQKQYEEIRRELDVLNKQRGDDQRRIEKLGQDNAAL 116 (475)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHH
Confidence 344555555 45555677777777664322 223345555555544444
No 19
>KOG3671|consensus
Probab=89.24 E-value=0.85 Score=52.52 Aligned_cols=7 Identities=14% Similarity=0.259 Sum_probs=3.1
Q ss_pred HHHHHHH
Q psy15122 619 KILELIL 625 (927)
Q Consensus 619 ~lL~~IL 625 (927)
.||.-|.
T Consensus 497 ~LmaqIR 503 (569)
T KOG3671|consen 497 ALMAQIR 503 (569)
T ss_pred HHHHHHH
Confidence 3444444
No 20
>PHA03247 large tegument protein UL36; Provisional
Probab=88.76 E-value=0.68 Score=62.45 Aligned_cols=7 Identities=43% Similarity=0.596 Sum_probs=2.6
Q ss_pred HHHHhCh
Q psy15122 331 EIMRVGL 337 (927)
Q Consensus 331 Ef~~~GL 337 (927)
|+|..=|
T Consensus 2117 EYM~kTL 2123 (3151)
T PHA03247 2117 EYMHLTL 2123 (3151)
T ss_pred HHHHHhH
Confidence 3333333
No 21
>KOG1925|consensus
Probab=84.36 E-value=1.1 Score=51.43 Aligned_cols=14 Identities=29% Similarity=0.342 Sum_probs=9.4
Q ss_pred ccchHHHHHHHHhc
Q psy15122 841 QQGVMDSLLEALQT 854 (927)
Q Consensus 841 ~~~v~D~Ll~~Lrs 854 (927)
+..-||+++..+-+
T Consensus 704 sh~~mk~~lK~~~~ 717 (817)
T KOG1925|consen 704 SHASMKSLLKSRLE 717 (817)
T ss_pred hHHHHHHHHHhhcc
Confidence 34568888876653
No 22
>smart00498 FH2 Formin Homology 2 Domain. FH proteins control rearrangements of the actin cytoskeleton, especially in the context of cytokinesis and cell polarisation. Members of this family have been found to interact with Rho-GTPases, profilin and other actin-assoziated proteins. These interactions are mediated by the proline-rich FH1 domain, usually located in front of FH2 (but not listed in SMART). Despite this cytosolic function, vertebrate formins have been assigned functions within the nucleus. A set of Formin-Binding Proteins (FBPs) has been shown to bind FH1 with their WW domain.
Probab=83.79 E-value=10 Score=44.51 Aligned_cols=116 Identities=14% Similarity=0.157 Sum_probs=83.5
Q ss_pred hhhhhhhHHHhhccCHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCcch---hHHHHHhhhHHHHHHHHHHHHHHHHHH
Q psy15122 681 FGDELLHVDRAARVSTDVIQNSIRQMENNIKNLETDIQNCKQAPVANEND---KFLEIMEPFAKEVRQKITLLSNMSKNM 757 (927)
Q Consensus 681 f~~eL~~v~~Askvs~~~l~~~~~~L~~~l~~l~~~l~~~~~~~~~~~~D---~f~~~m~~F~~~a~~~~~~L~~~~~~~ 757 (927)
|.+-+...-.++...++.|...+..+...+..+..-+...... ..+++ .|..-+..|...+.+.....+..-...
T Consensus 311 f~~~m~~F~~~a~~~~~~l~~~~~~~~~~~~~~~~yfge~~~~--~~~~efF~~f~~F~~~f~ka~~en~~~~~~e~~~~ 388 (432)
T smart00498 311 FIEVMKPFLKAAKEKYDKLQKDLSDLKTRFEKLVEYYGEDPKD--TSPEEFFKDFNEFLKEFSKAAEENIKKEEEEEERR 388 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444567788899999999999999998887755432211 12222 355566677777777777777778888
Q ss_pred HHHHHHHHHHcccCCC--CCcccchhccHHHHHHHHHHHHHHH
Q psy15122 758 MTLYGDLAEFYTFDKN--IYTLEEFFTDIKTFKDSFYQAWQEN 798 (927)
Q Consensus 758 ~~~~~~l~~yfgEd~~--~~~~eefF~~~~~F~~~f~~a~~en 798 (927)
....++..+||...+. ...+..+|.....|...+...+++.
T Consensus 389 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~d~~~~~~ 431 (432)
T smart00498 389 KQLVKETTEYEQSSSRQKERNPSMDFEVERDFLGVLDSLLEEL 431 (432)
T ss_pred HHHHHHHHhhhhhhhhhhhccchhhhhhhhhhhhhHHHHHHhh
Confidence 8889999999987552 3467778999999999999887653
No 23
>PF05308 Mito_fiss_reg: Mitochondrial fission regulator; InterPro: IPR007972 This family consists of several uncharacterised eukaryotic proteins of unknown function.
Probab=83.71 E-value=3.7 Score=44.53 Aligned_cols=7 Identities=14% Similarity=0.544 Sum_probs=2.7
Q ss_pred HHHHHHH
Q psy15122 499 RRVEDLS 505 (927)
Q Consensus 499 k~~~el~ 505 (927)
+++..|+
T Consensus 122 qKIsALE 128 (253)
T PF05308_consen 122 QKISALE 128 (253)
T ss_pred HHHHHHH
Confidence 3333333
No 24
>KOG0132|consensus
Probab=82.75 E-value=2.4 Score=51.35 Aligned_cols=9 Identities=22% Similarity=0.575 Sum_probs=3.4
Q ss_pred HHHHHHHhc
Q psy15122 366 DYYEFIQRF 374 (927)
Q Consensus 366 D~~el~~r~ 374 (927)
|...+.+.|
T Consensus 437 dL~~~feef 445 (894)
T KOG0132|consen 437 DLANLFEEF 445 (894)
T ss_pred HHHHHHHhc
Confidence 333333333
No 25
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=81.67 E-value=96 Score=34.80 Aligned_cols=189 Identities=18% Similarity=0.236 Sum_probs=98.1
Q ss_pred HHHHHHhcCCccchhhhhhhHHHHHHHhccCCchhHHHHhhhhhhhhhhcchhhhcCcCCCCCCCcchhhHHHHHHHHHH
Q psy15122 137 IEYIQYLSQPELSVNKMYSCIESLRIALTNHPLSWVNEFVLQDNKNFRKYPIAFLYPRFPSRSRNDSRYDRVQYECVRCI 216 (927)
Q Consensus 137 ~~~i~~L~~~~~~~~~~~~~l~~Lrv~L~t~~~sWv~~F~~~Gl~~Ll~~~l~~ll~~l~~~~~~~~~~~~~~~e~vkCL 216 (927)
.++|..|.+.+. +.-..+|..|...|++ .|+.+|+..-...|++. +...+ +++ +. .-+.-+.+++
T Consensus 46 ~~~Id~l~eK~~--~~Re~aL~~l~~~l~~---~~~~d~v~~~~~tL~~~----~~k~l-kkg-~~----~E~~lA~~~l 110 (309)
T PF05004_consen 46 KEAIDLLTEKSS--STREAALEALIRALSS---RYLPDFVEDRRETLLDA----LLKSL-KKG-KS----EEQALAARAL 110 (309)
T ss_pred HHHHHHHHhcCH--HHHHHHHHHHHHHHHh---cccHHHHHHHHHHHHHH----HHHHh-ccC-CH----HHHHHHHHHH
Confidence 355666644332 2334678899999988 67778886655556553 22223 122 11 1233455555
Q ss_pred HHHHhc---HhhHHHHhcchhHHHHHHHhc--CCCChhHHHHHHHHhhhhcccCCCchHHHHHHHHhhcccccCcChHHH
Q psy15122 217 RAIMNN---TVGLKQMFGQKEALTIVARSL--DPNKPTVMLEAVKVLAAVCLIPPDGHDKVIKAITMSGELKGKERFQPV 291 (927)
Q Consensus 217 kaimN~---~~Gl~~vl~~~~~i~~la~sl--~~~~~~~~~~vlelLaalc~~~~~Gh~~VL~Al~~~~~~~e~~RF~~l 291 (927)
-.++-+ ....+.++. .....|...+ .+..+..+..++.-|+.+|++...+.+-+...|..+..+ ..
T Consensus 111 ~Ll~ltlg~g~~~~ei~~--~~~~~L~~~l~d~s~~~~~R~~~~~aLai~~fv~~~d~~~~~~~~~~le~i-------f~ 181 (309)
T PF05004_consen 111 ALLALTLGAGEDSEEIFE--ELKPVLKRILTDSSASPKARAACLEALAICTFVGGSDEEETEELMESLESI-------FL 181 (309)
T ss_pred HHHhhhcCCCccHHHHHH--HHHHHHHHHHhCCccchHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHH-------HH
Confidence 555444 122445544 3333344333 344566667778888888888655666666333332100 11
Q ss_pred HHHHh--------ccCCCHHHHHHHHHHHHHHHcCchhHHHHHHHHHHHHHhChHHHHHHHhh-cCChhHHHHHHH
Q psy15122 292 VQGLM--------VKGNNEALRTACLQLINAIVATPDDLEFRLHLRNEIMRVGLYDLLDALEK-DASEDVSVQLKV 358 (927)
Q Consensus 292 v~~L~--------~~~~~~~~~~~~m~lIN~Lv~s~~dl~~Ri~lR~Ef~~~GL~eil~~L~~-~~~~~L~~ql~~ 358 (927)
+.... ....+..+.++.+.----|+...++..+.-++ .+.++.|.. .+++++.+++.+
T Consensus 182 ~~~~~~~~~~~~~~~~~~~~l~~aAL~aW~lLlt~~~~~~~~~~~---------~~~~~~l~~lL~s~d~~VRiAA 248 (309)
T PF05004_consen 182 LSILKSDGNAPVVAAEDDAALVAAALSAWALLLTTLPDSKLEDLL---------EEALPALSELLDSDDVDVRIAA 248 (309)
T ss_pred HHhcCcCCCcccccCCCccHHHHHHHHHHHHHHhcCCHHHHHHHH---------HHHHHHHHHHhcCCCHHHHHHH
Confidence 11111 11234567777777776667666664443221 222333332 345577788765
No 26
>KOG3080|consensus
Probab=76.06 E-value=42 Score=36.80 Aligned_cols=43 Identities=9% Similarity=0.108 Sum_probs=25.7
Q ss_pred cchhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccC
Q psy15122 728 ENDKFLEIMEPFAKEVRQKITLLSNMSKNMMTLYGDLAEFYTFD 771 (927)
Q Consensus 728 ~~D~f~~~m~~F~~~a~~~~~~L~~~~~~~~~~~~~l~~yfgEd 771 (927)
+.|.|..-| .|+..|...+...-..+.++.-.|..=..||.|=
T Consensus 133 ~eDDf~REl-aFYkQa~~aVl~A~~rL~elgV~~~RP~DYfAEM 175 (328)
T KOG3080|consen 133 PEDDFAREL-AFYKQALSAVLEAFPRLHELGVPFLRPTDYFAEM 175 (328)
T ss_pred chhHHHHHH-HHHHHHHHHHHHHHHHHHHcCCCccCchHHHHHH
Confidence 336666555 6777777666655555555555555555666653
No 27
>PF05518 Totivirus_coat: Totivirus coat protein; InterPro: IPR008871 This family of proteins contain the coat proteins of the Totiviruses.
Probab=75.70 E-value=4.8 Score=49.26 Aligned_cols=6 Identities=50% Similarity=1.292 Sum_probs=2.3
Q ss_pred HHHHHH
Q psy15122 212 CVRCIR 217 (927)
Q Consensus 212 ~vkCLk 217 (927)
|+-.|+
T Consensus 210 ~v~aLr 215 (759)
T PF05518_consen 210 CVEALR 215 (759)
T ss_pred HHHHHH
Confidence 333333
No 28
>KOG2999|consensus
Probab=75.05 E-value=19 Score=42.55 Aligned_cols=166 Identities=14% Similarity=0.246 Sum_probs=81.1
Q ss_pred CCChHHHHHHh----cCCccchh-hhhhhHHHHHHHhccCCchhHHHHh-hhhhhhhhhcchhhhcCcCCCCCCCcchhh
Q psy15122 133 FDKPIEYIQYL----SQPELSVN-KMYSCIESLRIALTNHPLSWVNEFV-LQDNKNFRKYPIAFLYPRFPSRSRNDSRYD 206 (927)
Q Consensus 133 ~~~P~~~i~~L----~~~~~~~~-~~~~~l~~Lrv~L~t~~~sWv~~F~-~~Gl~~Ll~~~l~~ll~~l~~~~~~~~~~~ 206 (927)
..+|..|...+ .+++...+ ...+.|.+| +..+.+..+|+ +.|+..|..+ .+.- ..-...
T Consensus 78 ~~sp~~~a~~i~e~l~~~~~~~~~~a~k~l~sl-----s~d~~fa~efi~~~gl~~L~~l-----iedg-----~~~~~~ 142 (713)
T KOG2999|consen 78 CASPSHYAKRIMEILTEGNNISKMEALKELDSL-----SLDPTFAEEFIRCSGLELLFSL-----IEDG-----RVCMSS 142 (713)
T ss_pred ecCchHHHHHHHHHHhCCCcHHHHHHHHHHhhc-----cccHHHHHHHHhcchHHHHHHH-----HHcC-----ccchHH
Confidence 46888888755 23332111 112223332 23568999999 5899888663 3321 011123
Q ss_pred HHHHHHHHHHHHHHhcHh-hHHHHhcchhHHHHHHHhcCCCCh--hHHHHHHHHhhhhcccCCCchHHHHHHHHhhcccc
Q psy15122 207 RVQYECVRCIRAIMNNTV-GLKQMFGQKEALTIVARSLDPNKP--TVMLEAVKVLAAVCLIPPDGHDKVIKAITMSGELK 283 (927)
Q Consensus 207 ~~~~e~vkCLkaimN~~~-Gl~~vl~~~~~i~~la~sl~~~~~--~~~~~vlelLaalc~~~~~Gh~~VL~Al~~~~~~~ 283 (927)
.+...|++.+..+|.... .++.+ ....|..++........ .+-..+|.+|-.+ |+.+-+.+.-+.
T Consensus 143 ~~L~~~L~af~elmehgvvsW~~~--~~~fV~~~a~~V~~~~~~a~~~~~AL~~LE~~----------vl~s~~~~~~v~ 210 (713)
T KOG2999|consen 143 ELLSTSLRAFSELMEHGVVSWESV--SNDFVVSMASYVNAKREDANTLLAALQMLESL----------VLGSDTLRQLVA 210 (713)
T ss_pred HHHHHHHHHHHHHHhhceeeeeec--ccHHHHHHHHHHhhhhhcccchHHHHHHHHHH----------HhCChHHHHHHH
Confidence 334445666666665533 12221 11233333333211110 1112233333322 333333333334
Q ss_pred cCcChHHHHHHHhccCCCHHHHHHHHHHHHHHHcCchhHHHHHHH
Q psy15122 284 GKERFQPVVQGLMVKGNNEALRTACLQLINAIVATPDDLEFRLHL 328 (927)
Q Consensus 284 e~~RF~~lv~~L~~~~~~~~~~~~~m~lIN~Lv~s~~dl~~Ri~l 328 (927)
+....+.++..+ ...|...++-.+++||+++...++- .|.++
T Consensus 211 eev~i~~li~hl--q~~n~~i~~~aial~nal~~~a~~~-~R~~~ 252 (713)
T KOG2999|consen 211 EEVPIETLIRHL--QVSNQRIQTCAIALLNALFRKAPDD-KRFEM 252 (713)
T ss_pred hcCcHHHHHHHH--HhcchHHHHHHHHHHHHHHhhCChH-HHHHH
Confidence 444555666666 4567777777999999997544332 44443
No 29
>PF01213 CAP_N: Adenylate cyclase associated (CAP) N terminal; InterPro: IPR013992 Cyclase-associated proteins (CAPs) are highly conserved actin-binding proteins present in a wide range of organisms including yeast, fly, plants, and mammals. CAPs are multifunctional proteins that contain several structural domains. CAP is involved in species-specific signalling pathways [, , , ]. In Drosophila, CAP functions in Hedgehog-mediated eye development and in establishing oocyte polarity. In Dictyostelium (slim mold), CAP is involved in microfilament reorganisation near the plasma membrane in a PIP2-regulated manner and is required to perpetuate the cAMP relay signal to organise fruitbody formation. In plants, CAP is involved in plant signalling pathways required for co-ordinated organ expansion. In yeast, CAP is involved in adenylate cyclase activation, as well as in vesicle trafficking and endocytosis. In both yeast and mammals, CAPs appear to be involved in recycling G-actin monomers from ADF/cofilins for subsequent rounds of filament assembly [, ]. In mammals, there are two different CAPs (CAP1 and CAP2) that share 64% amino acid identity. All CAPs appear to contain a C-terminal actin-binding domain that regulates actin remodelling in response to cellular signals and is required for normal cellular morphology, cell division, growth and locomotion in eukaryotes. CAP directly regulates actin filament dynamics and has been implicated in a number of complex developmental and morphological processes, including mRNA localisation and the establishment of cell polarity. Actin exists both as globular (G) (monomeric) actin subunits and assembled into filamentous (F) actin. In cells, actin cycles between these two forms. Proteins that bind F-actin often regulate F-actin assembly and its interaction with other proteins, while proteins that interact with G-actin often control the availability of unpolymerised actin. CAPs bind G-actin. In addition to actin-binding, CAPs can have additional roles, and may act as bifunctional proteins. In Saccharomyces cerevisiae (Baker's yeast), CAP is a component of the adenylyl cyclase complex (Cyr1p) that serves as an effector of Ras during normal cell signalling. S. cerevisiae CAP functions to expose adenylate cyclase binding sites to Ras, thereby enabling adenylate cyclase to be activated by Ras regulatory signals. In Schizosaccharomyces pombe (Fission yeast), CAP is also required for adenylate cyclase activity, but not through the Ras pathway. In both organisms, the N-terminal domain is responsible for adenylate cyclase activation, but the S cerevisiae and S. pombe N-termini cannot complement one another. Yeast CAPs are unique among the CAP family of proteins, because they are the only ones to directly interact with and activate adenylate cyclase []. S. cerevisiae CAP has four major domains. In addition to the N-terminal adenylate cyclase-interacting domain, and the C-terminal actin-binding domain, it possesses two other domains: a proline-rich domain that interacts with Src homology 3 (SH3) domains of specific proteins, and a domain that is responsible for CAP oligomerisation to form multimeric complexes (although oligomerisation appears to involve the N- and C-terminal domains as well). The proline-rich domain interacts with profilin, a protein that catalyses nucleotide exchange on G-actin monomers and promotes addition to barbed ends of filamentous F-actin []. Since CAP can bind profilin via a proline-rich domain, and G-actin via a C-terminal domain, it has been suggested that a ternary G-actin/CAP/profilin complex could be formed. This entry represents the N-terminal domain of CAP proteins. This domain has an all-alpha structure consisting of six helices in a bundle with a left-handed twist and an up-and-down topology [].; GO: 0003779 actin binding, 0007010 cytoskeleton organization; PDB: 1TJF_B 1S0P_A.
Probab=73.86 E-value=68 Score=36.04 Aligned_cols=34 Identities=18% Similarity=0.208 Sum_probs=15.5
Q ss_pred HHHHHHHHHHhChHHHHHHHhhcCChhHHHHHHHH
Q psy15122 325 RLHLRNEIMRVGLYDLLDALEKDASEDVSVQLKVF 359 (927)
Q Consensus 325 Ri~lR~Ef~~~GL~eil~~L~~~~~~~L~~ql~~f 359 (927)
-|.-+.+|..--+.++++.-+.+. +++..|-+.+
T Consensus 45 sV~afD~~i~~~l~~f~~~S~~ig-g~V~~~a~~v 78 (312)
T PF01213_consen 45 SVEAFDELINGPLKPFVELSKKIG-GDVAEQAQLV 78 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhh-HHHHHHHHHH
Confidence 344455555555555555444433 2344444433
No 30
>KOG4199|consensus
Probab=73.49 E-value=46 Score=37.39 Aligned_cols=140 Identities=19% Similarity=0.333 Sum_probs=77.8
Q ss_pred hhhhhhhhcchhhhcCcCCCCCCCcchhhHHHHHHHHHHHHHHhcHhhHHHHhcchhHHHHHHHhc-CCCChhHHHHHHH
Q psy15122 178 QDNKNFRKYPIAFLYPRFPSRSRNDSRYDRVQYECVRCIRAIMNNTVGLKQMFGQKEALTIVARSL-DPNKPTVMLEAVK 256 (927)
Q Consensus 178 ~Gl~~Ll~~~l~~ll~~l~~~~~~~~~~~~~~~e~vkCLkaimN~~~Gl~~vl~~~~~i~~la~sl-~~~~~~~~~~vle 256 (927)
+|+..|+.+ + .. + ++......--+|++.|+||--+..--..|......=..++..+ .+.+|.+..+++-
T Consensus 283 GGl~tl~~~----i-~d---~--n~~~~r~l~k~~lslLralAG~DsvKs~IV~~gg~~~ii~l~~~h~~~p~Vi~~~~a 352 (461)
T KOG4199|consen 283 GGLDTLLRC----I-DD---S--NEQGNRTLAKTCLSLLRALAGSDSVKSTIVEKGGLDKIITLALRHSDDPLVIQEVMA 352 (461)
T ss_pred cCHHHHHHH----H-hh---h--chhhHHHHHHHHHHHHHHHhCCCchHHHHHHhcChHHHHHHHHHcCCChHHHHHHHH
Confidence 689888774 2 11 1 1222233456799999999776654444443222211222222 4567778888888
Q ss_pred HhhhhcccCCCchHHHHHHHHhhcccccCcChHHHHHHHhccCCC-HHHHHHHHHHHHHHHcCchhHHHHHHHHHHHHHh
Q psy15122 257 VLAAVCLIPPDGHDKVIKAITMSGELKGKERFQPVVQGLMVKGNN-EALRTACLQLINAIVATPDDLEFRLHLRNEIMRV 335 (927)
Q Consensus 257 lLaalc~~~~~Gh~~VL~Al~~~~~~~e~~RF~~lv~~L~~~~~~-~~~~~~~m~lIN~Lv~s~~dl~~Ri~lR~Ef~~~ 335 (927)
+++.+|+-+++...+++++=..- -.|+.++.+--. .--+-+|+..=|.++.+.+. |.-+...
T Consensus 353 ~i~~l~LR~pdhsa~~ie~G~a~----------~avqAmkahP~~a~vQrnac~~IRNiv~rs~~~-------~~~~l~~ 415 (461)
T KOG4199|consen 353 IISILCLRSPDHSAKAIEAGAAD----------LAVQAMKAHPVAAQVQRNACNMIRNIVVRSAEN-------RTILLAN 415 (461)
T ss_pred HHHHHHhcCcchHHHHHhcchHH----------HHHHHHHhCcHHHHHHHHHHHHHHHHHHhhhhc-------cchHHhc
Confidence 99999988764333333321111 233333222111 12356888888888777652 3445667
Q ss_pred ChHHHHHHH
Q psy15122 336 GLYDLLDAL 344 (927)
Q Consensus 336 GL~eil~~L 344 (927)
|+.+++..-
T Consensus 416 GiE~Li~~A 424 (461)
T KOG4199|consen 416 GIEKLIRTA 424 (461)
T ss_pred cHHHHHHHH
Confidence 887777644
No 31
>KOG4849|consensus
Probab=71.01 E-value=9.2 Score=42.31 Aligned_cols=8 Identities=0% Similarity=-0.458 Sum_probs=3.3
Q ss_pred HHHHHHHh
Q psy15122 353 SVQLKVFI 360 (927)
Q Consensus 353 ~~ql~~f~ 360 (927)
..+++.|+
T Consensus 27 ~D~~eL~e 34 (498)
T KOG4849|consen 27 LDGKELKE 34 (498)
T ss_pred ccchhhhh
Confidence 33444444
No 32
>PF07462 MSP1_C: Merozoite surface protein 1 (MSP1) C-terminus; InterPro: IPR010901 This entry represents the C-terminal region of merozoite surface protein 1 (MSP1), which is found in a number of Plasmodium species. MSP-1 is a 200 kDa protein expressed on the surface of the Plasmodium vivax merozoite. MSP-1 of Plasmodium species is synthesised as a high-molecular-weight precursor and then processed into several fragments. At the time of red cell invasion by the merozoite, only the 19 kDa C-terminal fragment (MSP-119), which contains two epidermal growth factor-like domains, remains on the surface. Antibodies against MSP-119 inhibit merozoite entry into red cells, and immunisation with MSP-119 protects monkeys from challenging infections. Hence, MSP-119 is considered a promising vaccine candidate [].; GO: 0009405 pathogenesis, 0016020 membrane
Probab=70.87 E-value=12 Score=43.98 Aligned_cols=7 Identities=43% Similarity=0.605 Sum_probs=3.1
Q ss_pred HHHHHhh
Q psy15122 432 SILQHLL 438 (927)
Q Consensus 432 SilQhll 438 (927)
|-|.|++
T Consensus 217 sgLhHv~ 223 (574)
T PF07462_consen 217 SGLHHVF 223 (574)
T ss_pred hhHHHHH
Confidence 3444443
No 33
>KOG4672|consensus
Probab=70.86 E-value=11 Score=42.73 Aligned_cols=19 Identities=11% Similarity=0.071 Sum_probs=8.8
Q ss_pred cccccccccccchhhhhch
Q psy15122 597 CHKNIINGKQACEEVKQSK 615 (927)
Q Consensus 597 i~~~i~~v~~A~~el~~S~ 615 (927)
|..+-.+-+.|--+|+|++
T Consensus 409 ieskAtaTisakPqi~N~k 427 (487)
T KOG4672|consen 409 IESKATATISAKPQIRNLK 427 (487)
T ss_pred cccccccceecchhccccc
Confidence 3333444444555566443
No 34
>PF09849 DUF2076: Uncharacterized protein conserved in bacteria (DUF2076); InterPro: IPR018648 This family of hypothetical prokaryotic proteins has no known function but includes putative perimplasmic ligand-binding sensor proteins.
Probab=69.69 E-value=38 Score=36.66 Aligned_cols=15 Identities=20% Similarity=0.459 Sum_probs=10.2
Q ss_pred HHHHHHHHHhhhhhc
Q psy15122 517 EAEAKLVQAQKTLED 531 (927)
Q Consensus 517 e~ea~~~~le~~i~~ 531 (927)
.++++|.+||.++..
T Consensus 59 ~a~~ri~eLe~ql~q 73 (247)
T PF09849_consen 59 QAQARIQELEAQLQQ 73 (247)
T ss_pred HHHHHHHHHHHHHHh
Confidence 456677778877754
No 35
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=69.66 E-value=28 Score=31.81 Aligned_cols=110 Identities=12% Similarity=0.077 Sum_probs=71.1
Q ss_pred hHHHHHHhcCCccchhhhhhhHHHHHHHhccCCchhHHHHhh-hhhhhhhhcchhhhcCcCCCCCCCcchhhHHHHHHHH
Q psy15122 136 PIEYIQYLSQPELSVNKMYSCIESLRIALTNHPLSWVNEFVL-QDNKNFRKYPIAFLYPRFPSRSRNDSRYDRVQYECVR 214 (927)
Q Consensus 136 P~~~i~~L~~~~~~~~~~~~~l~~Lrv~L~t~~~sWv~~F~~-~Gl~~Ll~~~l~~ll~~l~~~~~~~~~~~~~~~e~vk 214 (927)
-..++..|.++.. ......+.+|...-.. .-.+...|+. +++..++.+ + . + .+..++..++.
T Consensus 9 i~~l~~~l~~~~~--~~~~~a~~~l~~l~~~-~~~~~~~~~~~~~i~~l~~~----l-~--------~-~~~~v~~~a~~ 71 (120)
T cd00020 9 LPALVSLLSSSDE--NVQREAAWALSNLSAG-NNDNIQAVVEAGGLPALVQL----L-K--------S-EDEEVVKAALW 71 (120)
T ss_pred hHHHHHHHHcCCH--HHHHHHHHHHHHHhcC-CHHHHHHHHHCCChHHHHHH----H-h--------C-CCHHHHHHHHH
Confidence 3445566655542 2223445555543332 3466667775 677777663 2 1 1 23567788999
Q ss_pred HHHHHHhcHhhHHHHhcchhHHHHHHHhcCCCChhHHHHHHHHhhhhc
Q psy15122 215 CIRAIMNNTVGLKQMFGQKEALTIVARSLDPNKPTVMLEAVKVLAAVC 262 (927)
Q Consensus 215 CLkaimN~~~Gl~~vl~~~~~i~~la~sl~~~~~~~~~~vlelLaalc 262 (927)
||..|+.+......++-..+.+..+...++..+..++..++.+|..+|
T Consensus 72 ~L~~l~~~~~~~~~~~~~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l~ 119 (120)
T cd00020 72 ALRNLAAGPEDNKLIVLEAGGVPKLVNLLDSSNEDIQKNATGALSNLA 119 (120)
T ss_pred HHHHHccCcHHHHHHHHHCCChHHHHHHHhcCCHHHHHHHHHHHHHhh
Confidence 999998877544444444567889999998888888888888887776
No 36
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=69.56 E-value=2.6e+02 Score=33.69 Aligned_cols=66 Identities=20% Similarity=0.345 Sum_probs=53.0
Q ss_pred hHHHHHHHHHHHHHHhcHhhHHHHhcchhHHHHHHHhcCCCChhHHHHHHHHhhhhcccCCCchHHH
Q psy15122 206 DRVQYECVRCIRAIMNNTVGLKQMFGQKEALTIVARSLDPNKPTVMLEAVKVLAAVCLIPPDGHDKV 272 (927)
Q Consensus 206 ~~~~~e~vkCLkaimN~~~Gl~~vl~~~~~i~~la~sl~~~~~~~~~~vlelLaalc~~~~~Gh~~V 272 (927)
+.+..-+++.|..+..+..|.-.++...+.+..|..|+......+...+..+|..+|-.+ .|.+.+
T Consensus 91 ~~Vr~l~l~~l~~~~~~~~~~~~~~~~~~l~~~i~~~L~~~d~~Va~~A~~~L~~l~~~~-~~~~~l 156 (503)
T PF10508_consen 91 PKVRRLALKQLGRIARHSEGAAQLLVDNELLPLIIQCLRDPDLSVAKAAIKALKKLASHP-EGLEQL 156 (503)
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHhcCccHHHHHHHHHcCCcHHHHHHHHHHHHHHhCCc-hhHHHH
Confidence 445666777777777777787888888889999999999999999999999999998765 455544
No 37
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=69.14 E-value=1e+02 Score=36.99 Aligned_cols=105 Identities=15% Similarity=0.330 Sum_probs=75.9
Q ss_pred hHHHHHHHHHHHHHHhcHhhHHHHhcchhHHHHHHHhcCCCChhHHHHHHHHhhhhcccCCCchHHHHHHHHhhcccccC
Q psy15122 206 DRVQYECVRCIRAIMNNTVGLKQMFGQKEALTIVARSLDPNKPTVMLEAVKVLAAVCLIPPDGHDKVIKAITMSGELKGK 285 (927)
Q Consensus 206 ~~~~~e~vkCLkaimN~~~Gl~~vl~~~~~i~~la~sl~~~~~~~~~~vlelLaalc~~~~~Gh~~VL~Al~~~~~~~e~ 285 (927)
..+-..++++|+.|..+..|++.++.. +.+..|...+...+..++.-+++++..+|-.++. .+++... .
T Consensus 133 ~~Va~~A~~~L~~l~~~~~~~~~l~~~-~~~~~L~~l~~~~~~~vR~Rv~el~v~i~~~S~~----~~~~~~~------s 201 (503)
T PF10508_consen 133 LSVAKAAIKALKKLASHPEGLEQLFDS-NLLSKLKSLMSQSSDIVRCRVYELLVEIASHSPE----AAEAVVN------S 201 (503)
T ss_pred HHHHHHHHHHHHHHhCCchhHHHHhCc-chHHHHHHHHhccCHHHHHHHHHHHHHHHhcCHH----HHHHHHh------c
Confidence 445678999999999999999988754 4477777777665667777899999888877632 2222222 1
Q ss_pred cChHHHHHHHhccCCCHHHHHHHHHHHHHHHcCchhHH
Q psy15122 286 ERFQPVVQGLMVKGNNEALRTACLQLINAIVATPDDLE 323 (927)
Q Consensus 286 ~RF~~lv~~L~~~~~~~~~~~~~m~lIN~Lv~s~~dl~ 323 (927)
+=|..++..| ..+++-++.+++.++-.|..++..++
T Consensus 202 gll~~ll~eL--~~dDiLvqlnalell~~La~~~~g~~ 237 (503)
T PF10508_consen 202 GLLDLLLKEL--DSDDILVQLNALELLSELAETPHGLQ 237 (503)
T ss_pred cHHHHHHHHh--cCccHHHHHHHHHHHHHHHcChhHHH
Confidence 2356677777 34888899999999988877666543
No 38
>KOG1103|consensus
Probab=64.74 E-value=1.3e+02 Score=33.54 Aligned_cols=51 Identities=20% Similarity=0.169 Sum_probs=37.9
Q ss_pred ccccccccccccccccchhhhhchhHHHHHHHHHH------------------hcccccCCCCCcccce
Q psy15122 592 EMYTDCHKNIINGKQACEEVKQSKKLAKILELILL------------------MGNYMNSGSRNGGAFG 642 (927)
Q Consensus 592 e~v~~i~~~i~~v~~A~~el~~S~~f~~lL~~IL~------------------iGNymN~gs~~g~A~G 642 (927)
...-++.|+|..+.+|.....+.+....+|+-.|. .-|..|....||.|+|
T Consensus 490 p~s~dLSP~L~d~~AA~Qla~~gps~~q~l~Rf~SqqgpikpvspnsspfGTd~RN~a~aanprgda~~ 558 (561)
T KOG1103|consen 490 PASMDLSPDLEDLEAAIQLANAGPSSNQALERFLSQQGPIKPVSPNSSPFGTDKRNGALAANPRGDAFG 558 (561)
T ss_pred CccCCCCccHHHHHHHHHHHhcCCchhHHHHHHHhhcCCCCCCCCCCCCcccccccchhccCCCccccC
Confidence 44668889999999999888887787777777776 3355566666677766
No 39
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=63.45 E-value=59 Score=29.58 Aligned_cols=59 Identities=15% Similarity=0.215 Sum_probs=47.6
Q ss_pred hHHHHHHHHHHHHHHhc-HhhHHHHhcchhHHHHHHHhcCCCChhHHHHHHHHhhhhcccC
Q psy15122 206 DRVQYECVRCIRAIMNN-TVGLKQMFGQKEALTIVARSLDPNKPTVMLEAVKVLAAVCLIP 265 (927)
Q Consensus 206 ~~~~~e~vkCLkaimN~-~~Gl~~vl~~~~~i~~la~sl~~~~~~~~~~vlelLaalc~~~ 265 (927)
......++.||..++.+ ..+...++. .+.+..+...+...++.++..++..|+.+|...
T Consensus 21 ~~~~~~a~~~l~~l~~~~~~~~~~~~~-~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~ 80 (120)
T cd00020 21 ENVQREAAWALSNLSAGNNDNIQAVVE-AGGLPALVQLLKSEDEEVVKAALWALRNLAAGP 80 (120)
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHH-CCChHHHHHHHhCCCHHHHHHHHHHHHHHccCc
Confidence 45678899999999987 555666554 478999999998888999988999999998765
No 40
>PF01690 PLRV_ORF5: Potato leaf roll virus readthrough protein; InterPro: IPR002929 This family consists mainly of the Potato leafroll virus (PLrV) read through protein otherwise known as the minor capsid protein. This is generated via a readthrough of open reading frame 3, the coat protein, allowing transcription of open reading frame 5 to give an extended coat protein with a large C-terminal addition or read through domain []. The read through protein is essential for the circulative aphid transmission of PLrV [] and Beet western yellows virus []. The N-terminal region of the luteovirus readthrough domain determines virus binding to Buchnera GroEL and is essential for virus persistence in the aphid [].; GO: 0019028 viral capsid
Probab=63.21 E-value=5.6 Score=46.18 Aligned_cols=18 Identities=22% Similarity=0.125 Sum_probs=8.5
Q ss_pred cccceeeecccccccccc
Q psy15122 638 GGAFGFEINFLTKLSSTK 655 (927)
Q Consensus 638 g~A~GFkLssL~KL~dtK 655 (927)
|+..|.+|+-+..-...|
T Consensus 141 G~y~g~~ItN~~~~nt~~ 158 (465)
T PF01690_consen 141 GNYNGCTITNYKADNTWK 158 (465)
T ss_pred ccccCcEEecccccCccc
Confidence 444555555544433333
No 41
>PRK11637 AmiB activator; Provisional
Probab=62.15 E-value=2e+02 Score=33.82 Aligned_cols=33 Identities=12% Similarity=0.084 Sum_probs=17.8
Q ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Q psy15122 736 MEPFAKEVRQKITLLSNMSKNMMTLYGDLAEFY 768 (927)
Q Consensus 736 m~~F~~~a~~~~~~L~~~~~~~~~~~~~l~~yf 768 (927)
+..=+.....++..++..+......+...+.++
T Consensus 101 ~~~ei~~l~~eI~~~q~~l~~~~~~l~~rlra~ 133 (428)
T PRK11637 101 LNKQIDELNASIAKLEQQQAAQERLLAAQLDAA 133 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444555555556666666555555555544
No 42
>KOG0132|consensus
Probab=61.50 E-value=17 Score=44.59 Aligned_cols=27 Identities=11% Similarity=0.283 Sum_probs=13.3
Q ss_pred HHHHHHHHHHhCC-CChhhhhhhhCCCh
Q psy15122 83 LNQKFEDMLNDMN-LSDEKKEPLRRQPL 109 (927)
Q Consensus 83 i~~~F~~lle~ln-l~~~k~~~L~~~p~ 109 (927)
++..++.|.++-. |+..|-..|++..+
T Consensus 7 Fn~eL~SL~DsK~~IS~sKi~~ITkaAi 34 (894)
T KOG0132|consen 7 FNGELDSLEDSKPGISGSKILKITKAAI 34 (894)
T ss_pred HHHHHHHhhccCCcccHHHHHHHHHHHH
Confidence 4444444444444 56555555554443
No 43
>PF10152 DUF2360: Predicted coiled-coil domain-containing protein (DUF2360); InterPro: IPR019309 This entry represents a component of the WASH complex. The WASH complex is present at the surface of endosomes and recruits and activates the Arp2/3 complex to induce actin polymerisation. The WASH complex plays a key role in the fission of tubules that serve as transport intermediates during endosome sorting []. The WASH complex's subunit structure: F-actin-capping protein subunit alpha (CAPZA1, CAPZA2 or CAPZA3), F-actin-capping protein subunit beta (CAPZB), WASH (WASH1, WASH2P, WASH3P, WASH4P, WASH5P or WASH6P), FAM21 (FAM21A, FAM21B or FAM21C), KIAA1033, KIAA0196 (strumpellin) and CCDC53.
Probab=61.17 E-value=74 Score=31.67 Aligned_cols=28 Identities=21% Similarity=0.437 Sum_probs=15.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcc
Q psy15122 498 DRRVEDLSAKLEEAIMLRQEAEAKLVQAQKTLEDL 532 (927)
Q Consensus 498 ~k~~~el~~kle~~~~~~qe~ea~~~~le~~i~~l 532 (927)
+.+..+++.+|+ ..++.+.-||.++..+
T Consensus 20 E~kL~~~e~~Lq-------~~E~~l~iLEaKL~SI 47 (148)
T PF10152_consen 20 EEKLSDMEQRLQ-------RLEATLNILEAKLSSI 47 (148)
T ss_pred HHHHHHHHHHHH-------HHHHHHHHHHHHHhcc
Confidence 344444554443 4455666677776554
No 44
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=60.95 E-value=62 Score=31.09 Aligned_cols=51 Identities=16% Similarity=0.327 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCCcccchhccHHHHHHHHHH
Q psy15122 741 KEVRQKITLLSNMSKNMMTLYGDLAEFYTFDKNIYTLEEFFTDIKTFKDSFYQ 793 (927)
Q Consensus 741 ~~a~~~~~~L~~~~~~~~~~~~~l~~yfgEd~~~~~~eefF~~~~~F~~~f~~ 793 (927)
.....++..|+..++.+...|..++..|||.. -..+|.=.++..-..+|+.
T Consensus 64 ~~~~~~~~~L~~el~~l~~ry~t~LellGEK~--E~veEL~~Dv~DlK~myr~ 114 (120)
T PF12325_consen 64 RALKKEVEELEQELEELQQRYQTLLELLGEKS--EEVEELRADVQDLKEMYRE 114 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcchH--HHHHHHHHHHHHHHHHHHH
Confidence 44556788899999999999999999999843 2346666666666666654
No 45
>PHA03185 UL14 tegument protein; Provisional
Probab=60.30 E-value=72 Score=32.95 Aligned_cols=18 Identities=11% Similarity=0.106 Sum_probs=9.3
Q ss_pred hhHhHHHHHHHHHHHHHH
Q psy15122 495 TEEDRRVEDLSAKLEEAI 512 (927)
Q Consensus 495 ~~~~k~~~el~~kle~~~ 512 (927)
+..++++..++.+.+++.
T Consensus 68 e~VeQKar~Iq~rVEeQ~ 85 (214)
T PHA03185 68 EMLRQHAACVKIRVEEQA 85 (214)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344455555555555543
No 46
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=59.84 E-value=4.1e+02 Score=32.65 Aligned_cols=10 Identities=40% Similarity=0.514 Sum_probs=4.1
Q ss_pred HHHHHHHHhC
Q psy15122 327 HLRNEIMRVG 336 (927)
Q Consensus 327 ~lR~Ef~~~G 336 (927)
+++..+...|
T Consensus 187 ~L~~~a~~eg 196 (585)
T PRK14950 187 HLRKIAAAEG 196 (585)
T ss_pred HHHHHHHHcC
Confidence 3444444444
No 47
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=58.91 E-value=81 Score=37.23 Aligned_cols=36 Identities=6% Similarity=0.147 Sum_probs=18.3
Q ss_pred hhHhHHHHHHHHHHH-------HHHHHHHHHHHHHHHHhhhhh
Q psy15122 495 TEEDRRVEDLSAKLE-------EAIMLRQEAEAKLVQAQKTLE 530 (927)
Q Consensus 495 ~~~~k~~~el~~kle-------~~~~~~qe~ea~~~~le~~i~ 530 (927)
.+.+++.+.++..++ ......++.++.+..|+.+++
T Consensus 79 sELEKqLaaLrqElq~~saq~~dle~KIkeLEaE~~~Lk~Ql~ 121 (475)
T PRK13729 79 AQMQKQYEEIRRELDVLNKQRGDDQRRIEKLGQDNAALAEQVK 121 (475)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 444555555543333 222223355666777777764
No 48
>PF07200 Mod_r: Modifier of rudimentary (Mod(r)) protein; InterPro: IPR009851 This entry represents a conserved region approximately 150 residues long within a number of eukaryotic proteins that show homology with Drosophila melanogaster Modifier of rudimentary (Mod(r)) proteins. The N-terminal half of Mod(r) proteins is acidic, whereas the C-terminal half is basic [], and both of these regions are represented in this family.; PDB: 2CAZ_F 2P22_C 2F66_F.
Probab=55.59 E-value=1e+02 Score=30.36 Aligned_cols=51 Identities=20% Similarity=0.184 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcccCCCCCcccchhccHHHHHHHHHHHHHHHHHHHHHHH
Q psy15122 747 ITLLSNMSKNMMTLYGDLAEFYTFDKNIYTLEEFFTDIKTFKDSFYQAWQENIKLREAEE 806 (927)
Q Consensus 747 ~~~L~~~~~~~~~~~~~l~~yfgEd~~~~~~eefF~~~~~F~~~f~~a~~en~~~~e~ee 806 (927)
...|+....+++..-..++.=|.+.. ..+..|+..|...++....|+...|
T Consensus 98 ~~~L~~~~~e~eeeSe~lae~fl~g~---------~d~~~Fl~~f~~~R~~yH~R~~K~E 148 (150)
T PF07200_consen 98 LARLQAAASEAEEESEELAEEFLDGE---------IDVDDFLKQFKEKRKLYHLRRAKEE 148 (150)
T ss_dssp HHHHHHHHHHHHHHHHHHC-S-SSSH---------HHHHHHHHHHHHHHHHHHHHH---H
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCC---------CCHHHHHHHHHHHHHHHHHHHhhhc
Confidence 34466677777777777777665421 2478999999999988888765544
No 49
>KOG4848|consensus
Probab=54.79 E-value=2.4e+02 Score=29.19 Aligned_cols=21 Identities=14% Similarity=0.442 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHccc--CCC
Q psy15122 753 MSKNMMTLYGDLAEFYTF--DKN 773 (927)
Q Consensus 753 ~~~~~~~~~~~l~~yfgE--d~~ 773 (927)
.....+....++-+|||. ||.
T Consensus 165 ~~~r~erli~eiqe~fGy~vDpr 187 (225)
T KOG4848|consen 165 KEVRLERLIREIQEYFGYWVDPR 187 (225)
T ss_pred HHHHHHHHHHHHHHHhCccCCCC
Confidence 334455667788899997 444
No 50
>KOG1922|consensus
Probab=54.63 E-value=17 Score=46.41 Aligned_cols=66 Identities=14% Similarity=0.093 Sum_probs=43.9
Q ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc-cCCCCC--cccchhccHHHHHHHHHHHHHH
Q psy15122 732 FLEIMEPFAKEVRQKITLLSNMSKNMMTLYGDLAEFYT-FDKNIY--TLEEFFTDIKTFKDSFYQAWQE 797 (927)
Q Consensus 732 f~~~m~~F~~~a~~~~~~L~~~~~~~~~~~~~l~~yfg-Ed~~~~--~~eefF~~~~~F~~~f~~a~~e 797 (927)
|...+......|.-.++.+......+...+..+..+|+ ..-.+. ..+.|...+..|+.....-.+.
T Consensus 668 ~~~~l~~v~~aa~i~~~~l~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~f~~~~~~fl~~ae~ev~~ 736 (833)
T KOG1922|consen 668 FLSDLSNVESAAKIDLEVLAEECSDLKKGLEKVKRELPTASKNESLPPGDPFSKVKKEFLSSAEKEVKL 736 (833)
T ss_pred ccchhcccchhhccCHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCccchhhhhhhhhhhhHHHHHHH
Confidence 34444455566777888888888999999999999997 221111 3456777777777765544433
No 51
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=54.00 E-value=68 Score=30.84 Aligned_cols=100 Identities=11% Similarity=0.230 Sum_probs=65.6
Q ss_pred CCCcchhHHHHHHHHhhCCccCchhhhhhhHHHhhcc------CHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCcchh
Q psy15122 658 ENKTTLLHYLVDTIEQKFPECLKFGDELLHVDRAARV------STDVIQNSIRQMENNIKNLETDIQNCKQAPVANENDK 731 (927)
Q Consensus 658 d~k~TLLh~l~~~v~~~~p~ll~f~~eL~~v~~Askv------s~~~l~~~~~~L~~~l~~l~~~l~~~~~~~~~~~~D~ 731 (927)
.++..++..+-..|+..-.++..+.+++..+...... .+-.-..++......+..++.+++... .+
T Consensus 12 ~~~~~~ve~L~s~lr~~E~E~~~l~~el~~l~~~r~~l~~Eiv~l~~~~e~~~~~~~~~~~L~~el~~l~--------~r 83 (120)
T PF12325_consen 12 GPSVQLVERLQSQLRRLEGELASLQEELARLEAERDELREEIVKLMEENEELRALKKEVEELEQELEELQ--------QR 83 (120)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HH
Confidence 4567789999999998888888898888888764432 222222222333344444455444322 12
Q ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15122 732 FLEIMEPFAKEVRQKITLLSNMSKNMMTLYGDLAE 766 (927)
Q Consensus 732 f~~~m~~F~~~a~~~~~~L~~~~~~~~~~~~~l~~ 766 (927)
+..+-..+.+-..+++.|+..+..++..|+.-+.
T Consensus 84 -y~t~LellGEK~E~veEL~~Dv~DlK~myr~Qi~ 117 (120)
T PF12325_consen 84 -YQTLLELLGEKSEEVEELRADVQDLKEMYREQID 117 (120)
T ss_pred -HHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345567778888999999999999999987654
No 52
>PF05518 Totivirus_coat: Totivirus coat protein; InterPro: IPR008871 This family of proteins contain the coat proteins of the Totiviruses.
Probab=53.95 E-value=21 Score=43.88 Aligned_cols=12 Identities=33% Similarity=0.418 Sum_probs=5.3
Q ss_pred HHHHHHHHHHHh
Q psy15122 210 YECVRCIRAIMN 221 (927)
Q Consensus 210 ~e~vkCLkaimN 221 (927)
.+.|+.|-+.|.
T Consensus 211 v~aLrilganM~ 222 (759)
T PF05518_consen 211 VEALRILGANME 222 (759)
T ss_pred HHHHHHHHhhhh
Confidence 444444444443
No 53
>KOG0163|consensus
Probab=50.94 E-value=1.9e+02 Score=35.77 Aligned_cols=15 Identities=33% Similarity=0.733 Sum_probs=7.4
Q ss_pred cccCCHHHHHHHHHH
Q psy15122 379 MEIDDVNDCFETVRN 393 (927)
Q Consensus 379 ~d~~~~~~~f~~l~~ 393 (927)
+.+.|-+||.+++..
T Consensus 507 i~f~DNqDcIeL~E~ 521 (1259)
T KOG0163|consen 507 IEFTDNQDCIELIEA 521 (1259)
T ss_pred eEeccchhHHHHHHH
Confidence 344455555555433
No 54
>PF04108 APG17: Autophagy protein Apg17 ; InterPro: IPR007240 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Autophagy protein 17 (Apg17) is required for activating Apg1 protein kinases. This entry also contains Autophagy protein 11 which is involved in cytoplasm to vacuole transport (Cvt) and pexophagy. ; GO: 0006914 autophagy
Probab=49.78 E-value=4.9e+02 Score=30.49 Aligned_cols=32 Identities=16% Similarity=0.144 Sum_probs=23.0
Q ss_pred cchhccHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15122 778 EEFFTDIKTFKDSFYQAWQENIKLREAEEKSI 809 (927)
Q Consensus 778 eefF~~~~~F~~~f~~a~~en~~~~e~eek~r 809 (927)
+++......|...|.....|..+|+.-+++.+
T Consensus 335 ~~L~~~Y~~F~~aY~~LL~Ev~RRr~~~~k~~ 366 (412)
T PF04108_consen 335 EQLCEFYEGFLSAYDSLLLEVERRRAVRDKMK 366 (412)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444446688899999999999988766543
No 55
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.
Probab=49.62 E-value=1.4e+02 Score=35.08 Aligned_cols=141 Identities=15% Similarity=0.232 Sum_probs=76.9
Q ss_pred hHHHHHHHHHHHHHHhcHhhHHHHhcchhHHHHHHHhcCCCC--hhHHHHHHHHhhhhcccCC--CchHHHHHHHHhhcc
Q psy15122 206 DRVQYECVRCIRAIMNNTVGLKQMFGQKEALTIVARSLDPNK--PTVMLEAVKVLAAVCLIPP--DGHDKVIKAITMSGE 281 (927)
Q Consensus 206 ~~~~~e~vkCLkaimN~~~Gl~~vl~~~~~i~~la~sl~~~~--~~~~~~vlelLaalc~~~~--~Gh~~VL~Al~~~~~ 281 (927)
...+.-||+||..++..+ .+..++-..+.+..|...+.... +...- =+.+|+|-- .++ ..+.+.
T Consensus 158 ~~~~~~~v~~L~~LL~~~-~~R~~f~~~~~v~~L~~~L~~~~~~~Ql~Y-----~~ll~lWlLSF~~~--~~~~~~---- 225 (429)
T cd00256 158 NDYVQTAARCLQMLLRVD-EYRFAFVLADGVPTLVKLLSNATLGFQLQY-----QSIFCIWLLTFNPH--AAEVLK---- 225 (429)
T ss_pred cchHHHHHHHHHHHhCCc-hHHHHHHHccCHHHHHHHHhhccccHHHHH-----HHHHHHHHHhccHH--HHHhhc----
Confidence 345677999999999887 45555544447777777664322 12211 233444410 000 111111
Q ss_pred cccCcCh-HHHHHHHhccCCCHHHHHHHHHHHHHHHcCchhHHHHHHHHHHHHHhChHHHHHHHhh--cCChhHHHHHHH
Q psy15122 282 LKGKERF-QPVVQGLMVKGNNEALRTACLQLINAIVATPDDLEFRLHLRNEIMRVGLYDLLDALEK--DASEDVSVQLKV 358 (927)
Q Consensus 282 ~~e~~RF-~~lv~~L~~~~~~~~~~~~~m~lIN~Lv~s~~dl~~Ri~lR~Ef~~~GL~eil~~L~~--~~~~~L~~ql~~ 358 (927)
..++ ..+++-++.....--+|++++.|-|.+- .+.+...+...--.+..+|+..++..|.. ..+++|..-|+.
T Consensus 226 ---~~~~i~~l~~i~k~s~KEKvvRv~l~~l~Nll~-~~~~~~~~~~~~~~mv~~~l~~~l~~L~~rk~~DedL~edl~~ 301 (429)
T cd00256 226 ---RLSLIQDLSDILKESTKEKVIRIVLAIFRNLIS-KRVDREVKKTAALQMVQCKVLKTLQSLEQRKYDDEDLTDDLKF 301 (429)
T ss_pred ---cccHHHHHHHHHHhhhhHHHHHHHHHHHHHHhh-cccccchhhhHHHHHHHcChHHHHHHHhcCCCCcHHHHHHHHH
Confidence 1222 2333333333344567888888888873 33233333333456778899999998866 556666555544
Q ss_pred Hhhh
Q psy15122 359 FIEH 362 (927)
Q Consensus 359 f~~~ 362 (927)
..+.
T Consensus 302 L~e~ 305 (429)
T cd00256 302 LTEE 305 (429)
T ss_pred HHHH
Confidence 4433
No 56
>COG3416 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=49.23 E-value=1.3e+02 Score=31.39 Aligned_cols=17 Identities=18% Similarity=0.384 Sum_probs=12.0
Q ss_pred HHHHHHHhhhhhcccCC
Q psy15122 519 EAKLVQAQKTLEDLSSG 535 (927)
Q Consensus 519 ea~~~~le~~i~~l~~~ 535 (927)
..++++|+.+|+.+.++
T Consensus 61 ~~~i~eLe~ri~~lq~~ 77 (233)
T COG3416 61 STQIKELEKRIAILQAG 77 (233)
T ss_pred HHHHHHHHHHHHHHhcc
Confidence 45677888888777654
No 57
>KOG4368|consensus
Probab=48.98 E-value=5.6e+02 Score=31.00 Aligned_cols=18 Identities=17% Similarity=0.111 Sum_probs=13.2
Q ss_pred HHHHHHHHhhcCCCchhh
Q psy15122 387 CFETVRNMVMDSACEPYL 404 (927)
Q Consensus 387 ~f~~l~~~v~~t~a~~~f 404 (927)
+...|.|+|++..+.-|+
T Consensus 142 ~~~~l~n~~~~~~~~~~l 159 (757)
T KOG4368|consen 142 MAGHLRNRITADGAHFEL 159 (757)
T ss_pred HHHHHHhhhcccccchhh
Confidence 446678888888777666
No 58
>PF07304 SRA1: Steroid receptor RNA activator (SRA1); InterPro: IPR009917 This entry consists of several hypothetical mammalian steroid receptor RNA activator proteins. The SRA-RNAs encode stable proteins that are widely expressed and upregulated in breast cancer cell lines. SRA-RNA is a steroid receptor co-activator which acts as a functional RNA. This domain is also found at the C terminus of Sec31, a component of the coat protein complex II (COPII, which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). COPII has two main functions, the physical deformation of the endoplasmic reticulum membrane into vesicles and the selection of cargo molecules. ; PDB: 2YRU_A.
Probab=48.67 E-value=3.8 Score=41.25 Aligned_cols=14 Identities=21% Similarity=0.449 Sum_probs=8.0
Q ss_pred cchhHHHHHHHHhh
Q psy15122 661 TTLLHYLVDTIEQK 674 (927)
Q Consensus 661 ~TLLh~l~~~v~~~ 674 (927)
..-|+-|++.+..+
T Consensus 91 ~~~L~~L~~aL~~~ 104 (157)
T PF07304_consen 91 VDKLHQLAQALQAR 104 (157)
T ss_dssp HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcC
Confidence 34566666666654
No 59
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=47.62 E-value=1.3e+02 Score=33.57 Aligned_cols=138 Identities=17% Similarity=0.233 Sum_probs=74.8
Q ss_pred hhHHHHHHHHHHHHHHhcHhhHHHHhcchhHHHHHHHhcC---CCChhHHHHHHHHhhhhcccCCCchHHHHHHHHhhcc
Q psy15122 205 YDRVQYECVRCIRAIMNNTVGLKQMFGQKEALTIVARSLD---PNKPTVMLEAVKVLAAVCLIPPDGHDKVIKAITMSGE 281 (927)
Q Consensus 205 ~~~~~~e~vkCLkaimN~~~Gl~~vl~~~~~i~~la~sl~---~~~~~~~~~vlelLaalc~~~~~Gh~~VL~Al~~~~~ 281 (927)
....++-|++||..++.++ .+..++-..+.+..|...+. ...-..-.+.. --+.+|+|----...+.+.|...
T Consensus 163 ~~~~~~~av~~L~~LL~~~-~~R~~f~~~~~v~~l~~iL~~~~~~~~~~~~Ql~-Y~~ll~lWlLSF~~~~~~~~~~~-- 238 (312)
T PF03224_consen 163 DSELQYIAVQCLQNLLRSK-EYRQVFWKSNGVSPLFDILRKQATNSNSSGIQLQ-YQALLCLWLLSFEPEIAEELNKK-- 238 (312)
T ss_dssp HH---HHHHHHHHHHHTSH-HHHHHHHTHHHHHHHHHHHH---------HHHHH-HHHHHHHHHHTTSHHHHHHHHTT--
T ss_pred CcchHHHHHHHHHHHhCcc-hhHHHHHhcCcHHHHHHHHHhhcccCCCCchhHH-HHHHHHHHHHhcCHHHHHHHhcc--
Confidence 3445688999999999887 45555555778888877661 11111212211 12334554211223344444333
Q ss_pred cccCcChHHHHHHHhccCCCHHHHHHHHHHHHHHHcCchhHHHHHHHHHHHHHhChHHHHHHHhh--cCChhHHHHH
Q psy15122 282 LKGKERFQPVVQGLMVKGNNEALRTACLQLINAIVATPDDLEFRLHLRNEIMRVGLYDLLDALEK--DASEDVSVQL 356 (927)
Q Consensus 282 ~~e~~RF~~lv~~L~~~~~~~~~~~~~m~lIN~Lv~s~~dl~~Ri~lR~Ef~~~GL~eil~~L~~--~~~~~L~~ql 356 (927)
+=+..++.-++.....--.|++++.|-|.+-..+++ .-..+..+|+..+++.|.. ..+++|..-+
T Consensus 239 ----~~i~~L~~i~~~~~KEKvvRv~la~l~Nl~~~~~~~------~~~~mv~~~~l~~l~~L~~rk~~Dedl~edl 305 (312)
T PF03224_consen 239 ----YLIPLLADILKDSIKEKVVRVSLAILRNLLSKAPKS------NIELMVLCGLLKTLQNLSERKWSDEDLTEDL 305 (312)
T ss_dssp ----SHHHHHHHHHHH--SHHHHHHHHHHHHHTTSSSSTT------HHHHHHHH-HHHHHHHHHSS--SSHHHHHHH
T ss_pred ----chHHHHHHHHHhcccchHHHHHHHHHHHHHhccHHH------HHHHHHHccHHHHHHHHhcCCCCCHHHHHHH
Confidence 212233333333344567888899999988555554 5667778999999998866 4445544433
No 60
>PF03276 Gag_spuma: Spumavirus gag protein; InterPro: IPR004957 The Spumavirus gag protein is a core viral polyprotein that undergoes specific enzymatic cleavages in vivo to yield the mature protein.; GO: 0019028 viral capsid
Probab=47.53 E-value=2.4e+02 Score=33.80 Aligned_cols=13 Identities=31% Similarity=0.424 Sum_probs=7.1
Q ss_pred CcchhHHHHHHHH
Q psy15122 660 KTTLLHYLVDTIE 672 (927)
Q Consensus 660 k~TLLh~l~~~v~ 672 (927)
+.+.||-|.+++.
T Consensus 343 G~~plH~L~~vL~ 355 (582)
T PF03276_consen 343 GSYPLHQLADVLR 355 (582)
T ss_pred ccchHHHHHHHHH
Confidence 3555666655554
No 61
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=45.91 E-value=2.8e+02 Score=27.98 Aligned_cols=82 Identities=15% Similarity=0.255 Sum_probs=48.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCcchhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCC
Q psy15122 696 TDVIQNSIRQMENNIKNLETDIQNCKQAPVANENDKFLEIMEPFAKEVRQKITLLSNMSKNMMTLYGDLAEFYTFDKNIY 775 (927)
Q Consensus 696 ~~~l~~~~~~L~~~l~~l~~~l~~~~~~~~~~~~D~f~~~m~~F~~~a~~~~~~L~~~~~~~~~~~~~l~~yfgEd~~~~ 775 (927)
+.++..++.++...++.++.+|...... +-..+....+..|+.....+.+....+-. | ...+
T Consensus 81 i~~L~~el~~l~~~~k~l~~eL~~L~~~--------------~t~~el~~~i~~l~~e~~~l~~kL~~l~~--~--~~~v 142 (169)
T PF07106_consen 81 IKELREELAELKKEVKSLEAELASLSSE--------------PTNEELREEIEELEEEIEELEEKLEKLRS--G--SKPV 142 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcC--------------CCHHHHHHHHHHHHHHHHHHHHHHHHHHh--C--CCCC
Confidence 6777777888888888888877765443 11234555666666666677666666654 2 2225
Q ss_pred cccchhccHHHHHHHHHHHHHHHH
Q psy15122 776 TLEEFFTDIKTFKDSFYQAWQENI 799 (927)
Q Consensus 776 ~~eefF~~~~~F~~~f~~a~~en~ 799 (927)
++++. ......|.+++++-.
T Consensus 143 s~ee~----~~~~~~~~~~~k~w~ 162 (169)
T PF07106_consen 143 SPEEK----EKLEKEYKKWRKEWK 162 (169)
T ss_pred CHHHH----HHHHHHHHHHHHHHH
Confidence 55543 344445555544433
No 62
>KOG0946|consensus
Probab=45.45 E-value=5.3e+02 Score=32.55 Aligned_cols=190 Identities=14% Similarity=0.207 Sum_probs=112.6
Q ss_pred HHHhCCCChhhhhhhhCC-ChHhHHHHHHHHHhccccccccccCCCChHHHHHHhcCCccchhhhhhhHHHHHHHhccCC
Q psy15122 90 MLNDMNLSDEKKEPLRRQ-PLANKKKMLLMHYKGTVTSYENKSKFDKPIEYIQYLSQPELSVNKMYSCIESLRIALTNHP 168 (927)
Q Consensus 90 lle~lnl~~~k~~~L~~~-p~~~K~~li~~~~~~~~~~~~~~~~~~~P~~~i~~L~~~~~~~~~~~~~l~~Lrv~L~t~~ 168 (927)
=+++--+.+|+|...+.+ ...+|....+ +..+...+|+.|..........--.|..+-+.+++..
T Consensus 30 RvessTL~eDRR~A~rgLKa~srkYR~~V--------------ga~Gmk~li~vL~~D~~D~E~ik~~LdTl~il~~~dd 95 (970)
T KOG0946|consen 30 RVESSTLLEDRRDAVRGLKAFSRKYREEV--------------GAQGMKPLIQVLQRDYMDPEIIKYALDTLLILTSHDD 95 (970)
T ss_pred HHhhccchhhHHHHHHHHHHHHHHHHHHH--------------HHcccHHHHHHHhhccCCHHHHHHHHHHHHHHHhcCc
Confidence 345666778899888754 4555544422 1345556777775433322222223343444343321
Q ss_pred --------------chhHHH-Hhh-hh-hhhhhhcchhhhcCcCCCCCCCcchhhHHHHHHHHHHHHHHhcHh--hHHHH
Q psy15122 169 --------------LSWVNE-FVL-QD-NKNFRKYPIAFLYPRFPSRSRNDSRYDRVQYECVRCIRAIMNNTV--GLKQM 229 (927)
Q Consensus 169 --------------~sWv~~-F~~-~G-l~~Ll~~~l~~ll~~l~~~~~~~~~~~~~~~e~vkCLkaimN~~~--Gl~~v 229 (927)
-.|+-+ |+. +| +.+|+.+ + +..+..+-.-.|+.|.|||-+.. --+.+
T Consensus 96 ~~~v~dds~qsdd~g~~iae~fik~qd~I~lll~~-----~---------e~~DF~VR~~aIqLlsalls~r~~e~q~~l 161 (970)
T KOG0946|consen 96 SPEVMDDSTQSDDLGLWIAEQFIKNQDNITLLLQS-----L---------EEFDFHVRLYAIQLLSALLSCRPTELQDAL 161 (970)
T ss_pred chhhcccchhhhHHHHHHHHHHHcCchhHHHHHHH-----H---------HhhchhhhhHHHHHHHHHHhcCCHHHHHHH
Confidence 245443 342 33 5555442 2 22223344568889999998864 24456
Q ss_pred hcchhHHHHHHHhcCCCChhHHHHHHHHhhhhcccCCCchHHHHHHHHhhcccccCcChHHHHHHHhccC--CCHHHHHH
Q psy15122 230 FGQKEALTIVARSLDPNKPTVMLEAVKVLAAVCLIPPDGHDKVIKAITMSGELKGKERFQPVVQGLMVKG--NNEALRTA 307 (927)
Q Consensus 230 l~~~~~i~~la~sl~~~~~~~~~~vlelLaalc~~~~~Gh~~VL~Al~~~~~~~e~~RF~~lv~~L~~~~--~~~~~~~~ 307 (927)
+.+|.+|..+..-|.-.+-.+|-+++=+|.++.-- .+|-+=|=||.+. |..+.+-+...+ +.-.+.--
T Consensus 162 l~~P~gIS~lmdlL~DsrE~IRNe~iLlL~eL~k~--n~~IQKlVAFENa--------FerLfsIIeeEGg~dGgIVveD 231 (970)
T KOG0946|consen 162 LVSPMGISKLMDLLRDSREPIRNEAILLLSELVKD--NSSIQKLVAFENA--------FERLFSIIEEEGGLDGGIVVED 231 (970)
T ss_pred HHCchhHHHHHHHHhhhhhhhchhHHHHHHHHHcc--CchHHHHHHHHHH--------HHHHHHHHHhcCCCCCcchHHH
Confidence 78999999999888777777777877777666543 5776667788777 555555443222 33356678
Q ss_pred HHHHHHHHHc
Q psy15122 308 CLQLINAIVA 317 (927)
Q Consensus 308 ~m~lIN~Lv~ 317 (927)
||.|+|-|+.
T Consensus 232 CL~ll~NLLK 241 (970)
T KOG0946|consen 232 CLILLNNLLK 241 (970)
T ss_pred HHHHHHHHHh
Confidence 9999999974
No 63
>KOG0566|consensus
Probab=42.89 E-value=32 Score=43.26 Aligned_cols=14 Identities=29% Similarity=0.506 Sum_probs=9.8
Q ss_pred HHHHHHHHhCCCCh
Q psy15122 85 QKFEDMLNDMNLSD 98 (927)
Q Consensus 85 ~~F~~lle~lnl~~ 98 (927)
+.|...|+++++..
T Consensus 417 ~~~~l~le~l~l~~ 430 (1080)
T KOG0566|consen 417 EVLRLQLEDLNLNE 430 (1080)
T ss_pred HHHHHHHHHhhccc
Confidence 46677777877773
No 64
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=41.87 E-value=4e+02 Score=37.66 Aligned_cols=124 Identities=12% Similarity=0.098 Sum_probs=79.4
Q ss_pred HHHHHhcCCccchhhhhhhHHHHHHHhccC--CchhHHHHhh-hhhhhhhhcchhhhcCcCCCCCCCcchhhHHHHHHHH
Q psy15122 138 EYIQYLSQPELSVNKMYSCIESLRIALTNH--PLSWVNEFVL-QDNKNFRKYPIAFLYPRFPSRSRNDSRYDRVQYECVR 214 (927)
Q Consensus 138 ~~i~~L~~~~~~~~~~~~~l~~Lrv~L~t~--~~sWv~~F~~-~Gl~~Ll~~~l~~ll~~l~~~~~~~~~~~~~~~e~vk 214 (927)
-+|+.|++++...++ .+...|.-...+. ...|..-++. +++..|+.. ++. ....+..++.-++.
T Consensus 103 pLV~LL~sGs~eaKe--~AA~AL~sLS~~~~~D~~~~~I~v~~GaVp~Lv~l-----L~~------gsk~d~~L~~~Av~ 169 (2102)
T PLN03200 103 PLLSLLKSGSAEAQK--AAAEAIYAVSSGGLSDHVGSKIFSTEGVVPSLWDQ-----LQP------GNKQDKVVEGLLTG 169 (2102)
T ss_pred HHHHHHHCCCHHHHH--HHHHHHHHHHcCcchhhhhhhhhhhcCChHHHHHH-----HhC------CchhhHHHHHHHHH
Confidence 378888877543322 2333333322222 4457777774 557777663 221 11223334455789
Q ss_pred HHHHHHhcHhhHHHHhcchhHHHHHHHhcCCCChhHHHHHHHHhhhhcccCCCchHHHHH
Q psy15122 215 CIRAIMNNTVGLKQMFGQKEALTIVARSLDPNKPTVMLEAVKVLAAVCLIPPDGHDKVIK 274 (927)
Q Consensus 215 CLkaimN~~~Gl~~vl~~~~~i~~la~sl~~~~~~~~~~vlelLaalc~~~~~Gh~~VL~ 274 (927)
+|..|+.++.+....+-...+|..++..+.+.++.++..+..+|+.+|.-.+++...|++
T Consensus 170 AL~nLs~~~en~~~~IIeaGaVp~LV~LLsS~d~~lQ~eAa~aLa~Lass~ee~~~aVIe 229 (2102)
T PLN03200 170 ALRNLCGSTDGFWSATLEAGGVDILVKLLSSGNSDAQANAASLLARLMMAFESSISKVLD 229 (2102)
T ss_pred HHHHHhcCccchHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCChHHHHHHHH
Confidence 999999999887655434578999999999899999999999888888775445555543
No 65
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=41.70 E-value=82 Score=34.53 Aligned_cols=103 Identities=18% Similarity=0.284 Sum_probs=63.4
Q ss_pred hhHHHHHHHHHHhcccccCCCCC-cccceeeecccccccccccC--------CCCcchhHHHHHHHHhhC--CccCchhh
Q psy15122 615 KKLAKILELILLMGNYMNSGSRN-GGAFGFEINFLTKLSSTKDI--------ENKTTLLHYLVDTIEQKF--PECLKFGD 683 (927)
Q Consensus 615 ~~f~~lL~~IL~iGNymN~gs~~-g~A~GFkLssL~KL~dtKs~--------d~k~TLLh~l~~~v~~~~--p~ll~f~~ 683 (927)
-..+.+|.+.-.+=+.|+..... ....+|+++.=.|+.|.|.+ +.+.+|.+.|.+.++-+- ...+.-.-
T Consensus 79 yAVkELLKia~lLy~A~~~~~~~e~~~~~~~~~l~~k~~dlk~~R~Laseit~~GA~LydlL~kE~~lr~~R~~a~~r~~ 158 (267)
T PF10234_consen 79 YAVKELLKIASLLYSAMKSAPSDEEDDSLFKFDLSSKIQDLKAARQLASEITQRGASLYDLLGKEVELREERQRALARPL 158 (267)
T ss_pred HHHHHHHHHHHHHHHHHhCCCccccccchhhcccchhhhhHHHHHHHHHHHHHHHHHHHHHHhchHhHHHHHHHHHcCCc
Confidence 44567788887777788765321 12245555555677777763 345677777766665321 22334555
Q ss_pred hhhhHHHhhccCHHHHHHHHHHHHHHHHHHHHHH
Q psy15122 684 ELLHVDRAARVSTDVIQNSIRQMENNIKNLETDI 717 (927)
Q Consensus 684 eL~~v~~Askvs~~~l~~~~~~L~~~l~~l~~~l 717 (927)
|+.+++.+=+-.+..+..++.++.+.+.++..+-
T Consensus 159 e~~~iE~~l~~ai~~~~~~~~~~~~~l~~l~~de 192 (267)
T PF10234_consen 159 ELNEIEKALKEAIKAVQQQLQQTQQQLNNLASDE 192 (267)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6777777766667777777777777666666543
No 66
>smart00503 SynN Syntaxin N-terminal domain. Three-helix domain that (in Sso1p) slows the rate of its reaction with the SNAP-25 homologue Sec9p
Probab=40.51 E-value=2.4e+02 Score=26.06 Aligned_cols=64 Identities=11% Similarity=0.200 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhccCCCCCcchhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Q psy15122 697 DVIQNSIRQMENNIKNLETDIQNCKQAPVANENDKFLEIMEPFAKEVRQKITLLSNMSKNMMTLYG 762 (927)
Q Consensus 697 ~~l~~~~~~L~~~l~~l~~~l~~~~~~~~~~~~D~f~~~m~~F~~~a~~~~~~L~~~~~~~~~~~~ 762 (927)
+.|..+|..+...+..|+........+ .+.++.....+..-...+......+...++.+.....
T Consensus 11 ~~I~~~I~~i~~~v~~l~~l~~~~l~~--~~~~~~~~~~l~~~~~~~~~~~~~i~~~lk~l~~~~~ 74 (117)
T smart00503 11 EEIRANIQKISQNVAELQKLHEELLTP--PDADKELREKLERLIDDIKRLAKEIRAKLKELEKENL 74 (117)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcc--CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 556666777776666666655544333 2222345566666666666666666666666655443
No 67
>KOG1062|consensus
Probab=40.10 E-value=1.8e+02 Score=36.44 Aligned_cols=50 Identities=30% Similarity=0.460 Sum_probs=37.7
Q ss_pred hhHHHHHHHHHHHHHHhcHhhHHHHhcchhHHHHHHHhcCCCChhHHHHHHHHhhh
Q psy15122 205 YDRVQYECVRCIRAIMNNTVGLKQMFGQKEALTIVARSLDPNKPTVMLEAVKVLAA 260 (927)
Q Consensus 205 ~~~~~~e~vkCLkaimN~~~Gl~~vl~~~~~i~~la~sl~~~~~~~~~~vlelLaa 260 (927)
...+.||||+||-.|--+. |+.- -+|+.|++-|..+.-.+|..+|..|.-
T Consensus 290 GnAILYE~V~TI~~I~~~~-~Lrv-----lainiLgkFL~n~d~NirYvaLn~L~r 339 (866)
T KOG1062|consen 290 GNAILYECVRTIMDIRSNS-GLRV-----LAINILGKFLLNRDNNIRYVALNMLLR 339 (866)
T ss_pred hhHHHHHHHHHHHhccCCc-hHHH-----HHHHHHHHHhcCCccceeeeehhhHHh
Confidence 4668899999999986664 5554 468999998877777777777766543
No 68
>KOG2072|consensus
Probab=40.08 E-value=4.5e+02 Score=33.21 Aligned_cols=27 Identities=15% Similarity=0.174 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcc
Q psy15122 743 VRQKITLLSNMSKNMMTLYGDLAEFYT 769 (927)
Q Consensus 743 a~~~~~~L~~~~~~~~~~~~~l~~yfg 769 (927)
-...++.....++...+..+.+..+|+
T Consensus 727 Ek~Ri~~~~ae~e~~vk~k~~l~rm~~ 753 (988)
T KOG2072|consen 727 EKQRIEAAIAERESAVKDKKRLSRMYD 753 (988)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 334455555555666666666655554
No 69
>PRK10132 hypothetical protein; Provisional
Probab=39.67 E-value=1.5e+02 Score=28.00 Aligned_cols=80 Identities=10% Similarity=0.190 Sum_probs=49.7
Q ss_pred cCHHHHHHHHHHHHHHHHHHHHHHhhhcc---CCCCCcchhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc
Q psy15122 694 VSTDVIQNSIRQMENNIKNLETDIQNCKQ---APVANENDKFLEIMEPFAKEVRQKITLLSNMSKNMMTLYGDLAEFYTF 770 (927)
Q Consensus 694 vs~~~l~~~~~~L~~~l~~l~~~l~~~~~---~~~~~~~D~f~~~m~~F~~~a~~~~~~L~~~~~~~~~~~~~l~~yfgE 770 (927)
.+..+|..+...|..+|+.|-.+++..-. ......-+....++...+..++..+...+.....+......+-.|-.+
T Consensus 5 ~~~~~~~~q~e~L~~Dl~~L~~~le~ll~~~~~~~~~~~~~lR~r~~~~L~~ar~~l~~~~~~~~~~~~a~~~~~~~V~~ 84 (108)
T PRK10132 5 PNRNDVDDGVQDIQNDVNQLADSLESVLKSWGSDAKGEAEAARRKAQALLKETRARMHGRTRVQQAARDAVGCADTFVRE 84 (108)
T ss_pred CccchhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHh
Confidence 33444455555555555555554442110 000122355778888889999988888877766677778888888888
Q ss_pred CCC
Q psy15122 771 DKN 773 (927)
Q Consensus 771 d~~ 773 (927)
+|-
T Consensus 85 ~Pw 87 (108)
T PRK10132 85 RPW 87 (108)
T ss_pred CcH
Confidence 875
No 70
>KOG0946|consensus
Probab=37.48 E-value=9.7e+02 Score=30.42 Aligned_cols=211 Identities=17% Similarity=0.261 Sum_probs=109.4
Q ss_pred CChHHHHHHhc----C-CccchhhhhhhHHHHHHHhccCCchhHHHHhhhhhhhhhhcchhhhcCcCCCCCCCcchhhHH
Q psy15122 134 DKPIEYIQYLS----Q-PELSVNKMYSCIESLRIALTNHPLSWVNEFVLQDNKNFRKYPIAFLYPRFPSRSRNDSRYDRV 208 (927)
Q Consensus 134 ~~P~~~i~~L~----~-~~~~~~~~~~~l~~Lrv~L~t~~~sWv~~F~~~Gl~~Ll~~~l~~ll~~l~~~~~~~~~~~~~ 208 (927)
.+..++|..|- + .-..+++ ..++.|+..-| .|=...+-.|+..|+++ | + +|..++.+
T Consensus 18 ~s~aETI~kLcDRvessTL~eDRR--~A~rgLKa~sr----kYR~~Vga~Gmk~li~v----L-~-------~D~~D~E~ 79 (970)
T KOG0946|consen 18 QSAAETIEKLCDRVESSTLLEDRR--DAVRGLKAFSR----KYREEVGAQGMKPLIQV----L-Q-------RDYMDPEI 79 (970)
T ss_pred ccHHhHHHHHHHHHhhccchhhHH--HHHHHHHHHHH----HHHHHHHHcccHHHHHH----H-h-------hccCCHHH
Confidence 45567777662 2 2223332 24555664333 33334445788888774 2 2 24444544
Q ss_pred HHHHHHHHHHHHhcH--------------hh---HHHHhcchhHHHHHHHhcCCCChhHHHHHHHHhhhhcccCCCchHH
Q psy15122 209 QYECVRCIRAIMNNT--------------VG---LKQMFGQKEALTIVARSLDPNKPTVMLEAVKVLAAVCLIPPDGHDK 271 (927)
Q Consensus 209 ~~e~vkCLkaimN~~--------------~G---l~~vl~~~~~i~~la~sl~~~~~~~~~~vlelLaalc~~~~~Gh~~ 271 (927)
.-.++-.+--+..+. .| .+..+..++.|+.+..++..-.+.+|.-++++|+++---. |.+
T Consensus 80 ik~~LdTl~il~~~dd~~~v~dds~qsdd~g~~iae~fik~qd~I~lll~~~e~~DF~VR~~aIqLlsalls~r--~~e- 156 (970)
T KOG0946|consen 80 IKYALDTLLILTSHDDSPEVMDDSTQSDDLGLWIAEQFIKNQDNITLLLQSLEEFDFHVRLYAIQLLSALLSCR--PTE- 156 (970)
T ss_pred HHHHHHHHHHHHhcCcchhhcccchhhhHHHHHHHHHHHcCchhHHHHHHHHHhhchhhhhHHHHHHHHHHhcC--CHH-
Confidence 444444443333322 13 3445677788888888898888999988888888765442 222
Q ss_pred HHHHHHhhcccccCcChHHHHHHHhccCCCHHHHHHHHHHHHHHHcCchhHHHHHHHHHHHHHhChHHHHHHHhhcCChh
Q psy15122 272 VIKAITMSGELKGKERFQPVVQGLMVKGNNEALRTACLQLINAIVATPDDLEFRLHLRNEIMRVGLYDLLDALEKDASED 351 (927)
Q Consensus 272 VL~Al~~~~~~~e~~RF~~lv~~L~~~~~~~~~~~~~m~lIN~Lv~s~~dl~~Ri~lR~Ef~~~GL~eil~~L~~~~~~~ 351 (927)
|=+|+-.+ +.--+.+|.-| ++..+..|-..+.|+-+|+..+..++-
T Consensus 157 ~q~~ll~~-----P~gIS~lmdlL--~DsrE~IRNe~iLlL~eL~k~n~~IQK--------------------------- 202 (970)
T KOG0946|consen 157 LQDALLVS-----PMGISKLMDLL--RDSREPIRNEAILLLSELVKDNSSIQK--------------------------- 202 (970)
T ss_pred HHHHHHHC-----chhHHHHHHHH--hhhhhhhchhHHHHHHHHHccCchHHH---------------------------
Confidence 33333322 11122445444 233344444555555556555543333
Q ss_pred HHHHHHHHhhhhHhHHHHHHHhchhcccccCCHHHHHHHHHHHhhcCCC-chhhH
Q psy15122 352 VSVQLKVFIEHKEEDYYEFIQRFDNVRMEIDDVNDCFETVRNMVMDSAC-EPYLL 405 (927)
Q Consensus 352 L~~ql~~f~~~~~~D~~el~~r~~~~~~d~~~~~~~f~~l~~~v~~t~a-~~~f~ 405 (927)
|=+|+ +..++...+++.-.+..+.+ =++||.-++.+.++...+ ..||+
T Consensus 203 ----lVAFE-NaFerLfsIIeeEGg~dGgI-VveDCL~ll~NLLK~N~SNQ~~Fr 251 (970)
T KOG0946|consen 203 ----LVAFE-NAFERLFSIIEEEGGLDGGI-VVEDCLILLNNLLKNNISNQNFFR 251 (970)
T ss_pred ----HHHHH-HHHHHHHHHHHhcCCCCCcc-hHHHHHHHHHHHHhhCcchhhHHh
Confidence 33444 33344444443322221111 167888888888876654 46663
No 71
>PF07462 MSP1_C: Merozoite surface protein 1 (MSP1) C-terminus; InterPro: IPR010901 This entry represents the C-terminal region of merozoite surface protein 1 (MSP1), which is found in a number of Plasmodium species. MSP-1 is a 200 kDa protein expressed on the surface of the Plasmodium vivax merozoite. MSP-1 of Plasmodium species is synthesised as a high-molecular-weight precursor and then processed into several fragments. At the time of red cell invasion by the merozoite, only the 19 kDa C-terminal fragment (MSP-119), which contains two epidermal growth factor-like domains, remains on the surface. Antibodies against MSP-119 inhibit merozoite entry into red cells, and immunisation with MSP-119 protects monkeys from challenging infections. Hence, MSP-119 is considered a promising vaccine candidate [].; GO: 0009405 pathogenesis, 0016020 membrane
Probab=37.25 E-value=57 Score=38.73 Aligned_cols=6 Identities=17% Similarity=0.412 Sum_probs=2.4
Q ss_pred HHHHHh
Q psy15122 732 FLEIME 737 (927)
Q Consensus 732 f~~~m~ 737 (927)
|..+|.
T Consensus 477 YynKM~ 482 (574)
T PF07462_consen 477 YYNKMG 482 (574)
T ss_pred HHHHHH
Confidence 334443
No 72
>PF10165 Ric8: Guanine nucleotide exchange factor synembryn; InterPro: IPR019318 Ric8 is involved in the EGL-30 neurotransmitter signalling pathway []. It is a guanine nucleotide exchange factor [] that regulates neurotransmitter secretion.
Probab=36.89 E-value=3.9e+02 Score=31.67 Aligned_cols=57 Identities=25% Similarity=0.564 Sum_probs=41.7
Q ss_pred HHHHHHHHHhcHhhHHHHhcchhHHHHHH-Hh---------cCCCChhHHHHHHHHhhhhcccCCCch
Q psy15122 212 CVRCIRAIMNNTVGLKQMFGQKEALTIVA-RS---------LDPNKPTVMLEAVKVLAAVCLIPPDGH 269 (927)
Q Consensus 212 ~vkCLkaimN~~~Gl~~vl~~~~~i~~la-~s---------l~~~~~~~~~~vlelLaalc~~~~~Gh 269 (927)
|+.+||-+--.+.|++.++. ++++.+|+ .+ .......+..+|++.|+-+.+.++.+.
T Consensus 1 ~L~~LRiLsRd~~~~~~l~~-~~~l~~L~~~a~l~~~~~~~~~~~~~~v~~EALKCL~N~lf~s~~aR 67 (446)
T PF10165_consen 1 CLETLRILSRDPTGLDPLFT-EEGLSTLLKHAGLSESDEDEFESPDPDVSREALKCLCNALFLSPSAR 67 (446)
T ss_pred CHHHHHHHccCcccchhhcc-HHHHHHHHHhcCCcccccccccCCChHHHHHHHHHHHHHHhCCHHHH
Confidence 67788888888889988864 46666666 34 456667788889999888888764444
No 73
>KOG2140|consensus
Probab=36.73 E-value=1.3e+02 Score=35.69 Aligned_cols=63 Identities=19% Similarity=0.318 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHhcHhhHHHHhcchhHHHHHHHhcC-CC--ChhHHHHHHH-HhhhhcccCCCchHHHHHHH
Q psy15122 209 QYECVRCIRAIMNNTVGLKQMFGQKEALTIVARSLD-PN--KPTVMLEAVK-VLAAVCLIPPDGHDKVIKAI 276 (927)
Q Consensus 209 ~~e~vkCLkaimN~~~Gl~~vl~~~~~i~~la~sl~-~~--~~~~~~~vle-lLaalc~~~~~Gh~~VL~Al 276 (927)
-..+++||..|.|.+...+-| ++-+++..|. +. ...+.+.+++ .-+-+..|++.||..|.+-|
T Consensus 255 c~~~~kfiahLinq~VahEIv-----~Leil~lLLe~PTddSvevaI~flkecGakL~~VSpr~~n~IfErl 321 (739)
T KOG2140|consen 255 CLNASKFIAHLINQQVAHEIV-----ALEILTLLLERPTDDSVEVAIAFLKECGAKLAEVSPRALNGIFERL 321 (739)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHhChHHHhHHHHHH
Confidence 456889999999988655544 2334444442 22 2223333333 34456667766777665444
No 74
>KOG3546|consensus
Probab=36.20 E-value=1.1e+02 Score=36.85 Aligned_cols=8 Identities=38% Similarity=0.542 Sum_probs=4.8
Q ss_pred cchhHHHH
Q psy15122 661 TTLLHYLV 668 (927)
Q Consensus 661 ~TLLh~l~ 668 (927)
..||||-+
T Consensus 993 ~pllhlAa 1000 (1167)
T KOG3546|consen 993 QPLLHLAA 1000 (1167)
T ss_pred chhhhhhh
Confidence 45777654
No 75
>PF01213 CAP_N: Adenylate cyclase associated (CAP) N terminal; InterPro: IPR013992 Cyclase-associated proteins (CAPs) are highly conserved actin-binding proteins present in a wide range of organisms including yeast, fly, plants, and mammals. CAPs are multifunctional proteins that contain several structural domains. CAP is involved in species-specific signalling pathways [, , , ]. In Drosophila, CAP functions in Hedgehog-mediated eye development and in establishing oocyte polarity. In Dictyostelium (slim mold), CAP is involved in microfilament reorganisation near the plasma membrane in a PIP2-regulated manner and is required to perpetuate the cAMP relay signal to organise fruitbody formation. In plants, CAP is involved in plant signalling pathways required for co-ordinated organ expansion. In yeast, CAP is involved in adenylate cyclase activation, as well as in vesicle trafficking and endocytosis. In both yeast and mammals, CAPs appear to be involved in recycling G-actin monomers from ADF/cofilins for subsequent rounds of filament assembly [, ]. In mammals, there are two different CAPs (CAP1 and CAP2) that share 64% amino acid identity. All CAPs appear to contain a C-terminal actin-binding domain that regulates actin remodelling in response to cellular signals and is required for normal cellular morphology, cell division, growth and locomotion in eukaryotes. CAP directly regulates actin filament dynamics and has been implicated in a number of complex developmental and morphological processes, including mRNA localisation and the establishment of cell polarity. Actin exists both as globular (G) (monomeric) actin subunits and assembled into filamentous (F) actin. In cells, actin cycles between these two forms. Proteins that bind F-actin often regulate F-actin assembly and its interaction with other proteins, while proteins that interact with G-actin often control the availability of unpolymerised actin. CAPs bind G-actin. In addition to actin-binding, CAPs can have additional roles, and may act as bifunctional proteins. In Saccharomyces cerevisiae (Baker's yeast), CAP is a component of the adenylyl cyclase complex (Cyr1p) that serves as an effector of Ras during normal cell signalling. S. cerevisiae CAP functions to expose adenylate cyclase binding sites to Ras, thereby enabling adenylate cyclase to be activated by Ras regulatory signals. In Schizosaccharomyces pombe (Fission yeast), CAP is also required for adenylate cyclase activity, but not through the Ras pathway. In both organisms, the N-terminal domain is responsible for adenylate cyclase activation, but the S cerevisiae and S. pombe N-termini cannot complement one another. Yeast CAPs are unique among the CAP family of proteins, because they are the only ones to directly interact with and activate adenylate cyclase []. S. cerevisiae CAP has four major domains. In addition to the N-terminal adenylate cyclase-interacting domain, and the C-terminal actin-binding domain, it possesses two other domains: a proline-rich domain that interacts with Src homology 3 (SH3) domains of specific proteins, and a domain that is responsible for CAP oligomerisation to form multimeric complexes (although oligomerisation appears to involve the N- and C-terminal domains as well). The proline-rich domain interacts with profilin, a protein that catalyses nucleotide exchange on G-actin monomers and promotes addition to barbed ends of filamentous F-actin []. Since CAP can bind profilin via a proline-rich domain, and G-actin via a C-terminal domain, it has been suggested that a ternary G-actin/CAP/profilin complex could be formed. This entry represents the N-terminal domain of CAP proteins. This domain has an all-alpha structure consisting of six helices in a bundle with a left-handed twist and an up-and-down topology [].; GO: 0003779 actin binding, 0007010 cytoskeleton organization; PDB: 1TJF_B 1S0P_A.
Probab=36.07 E-value=12 Score=41.92 Aligned_cols=19 Identities=21% Similarity=0.118 Sum_probs=8.7
Q ss_pred Hhhhhccccchhhhhhhhh
Q psy15122 409 QHLLFIRDDQNMVMDSACE 427 (927)
Q Consensus 409 ~~ll~~~~~~~~~~~~~~~ 427 (927)
.||-.+.+.-..+.+..++
T Consensus 131 NHLsavsEgi~aLgWV~v~ 149 (312)
T PF01213_consen 131 NHLSAVSEGIPALGWVAVE 149 (312)
T ss_dssp HHHHHHHCGGGGGGGGG--
T ss_pred HHHHHHHHhhheeeeeeeC
Confidence 5555555555454444444
No 76
>PHA03211 serine/threonine kinase US3; Provisional
Probab=35.66 E-value=40 Score=40.00 Aligned_cols=23 Identities=13% Similarity=0.182 Sum_probs=15.4
Q ss_pred ccCHHHHHHHHHHHHHHHHHHHH
Q psy15122 693 RVSTDVIQNSIRQMENNIKNLET 715 (927)
Q Consensus 693 kvs~~~l~~~~~~L~~~l~~l~~ 715 (927)
.++...+..-+.++-.+|..+-.
T Consensus 256 ~l~~~~~~~i~~qi~~aL~yLH~ 278 (461)
T PHA03211 256 PLGLAQVTAVARQLLSAIDYIHG 278 (461)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHH
Confidence 46777777777777777666543
No 77
>PF06637 PV-1: PV-1 protein (PLVAP); InterPro: IPR009538 This family consists of several PV-1 (PLVAP) proteins, which seem to be specific to mammals. PV-1 is a novel protein component of the endothelial fenestral and stomatal diaphragms []. The function of this family is unknown.
Probab=35.10 E-value=76 Score=36.03 Aligned_cols=11 Identities=27% Similarity=0.295 Sum_probs=6.0
Q ss_pred CCCChHHHHHH
Q psy15122 132 KFDKPIEYIQY 142 (927)
Q Consensus 132 ~~~~P~~~i~~ 142 (927)
+..+-.+|+++
T Consensus 17 ~~kgC~YYlry 27 (442)
T PF06637_consen 17 KGKGCWYYLRY 27 (442)
T ss_pred CCCChhHHHHH
Confidence 34455666654
No 78
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term
Probab=34.08 E-value=1.1e+02 Score=35.25 Aligned_cols=112 Identities=13% Similarity=0.204 Sum_probs=72.3
Q ss_pred hhhhhHHHHHHHhccCCchhHHHHhhhhhhhhhhcchhhhcCcCCCCCCCcchhhHHHHHHHHHHHHHHhcHhhHHHHhc
Q psy15122 152 KMYSCIESLRIALTNHPLSWVNEFVLQDNKNFRKYPIAFLYPRFPSRSRNDSRYDRVQYECVRCIRAIMNNTVGLKQMFG 231 (927)
Q Consensus 152 ~~~~~l~~Lrv~L~t~~~sWv~~F~~~Gl~~Ll~~~l~~ll~~l~~~~~~~~~~~~~~~e~vkCLkaimN~~~Gl~~vl~ 231 (927)
.....++-+|-.+.+. ..++.|..-+++.++- .++.. +....---.+++|.+|+++..+.|.+.+
T Consensus 41 vraa~yRilRy~i~d~--~~l~~~~~l~id~~ii-------~SL~~----~~~~~~ER~QALkliR~~l~~~~~~~~~-- 105 (371)
T PF14664_consen 41 VRAAGYRILRYLISDE--ESLQILLKLHIDIFII-------RSLDR----DNKNDVEREQALKLIRAFLEIKKGPKEI-- 105 (371)
T ss_pred HHHHHHHHHHHHHcCH--HHHHHHHHcCCchhhH-------hhhcc----cCCChHHHHHHHHHHHHHHHhcCCcccC--
Confidence 4455678888888774 4566665555554422 23311 1111111245999999999998787765
Q ss_pred chhHHHHHHHhcCCCChhHHHHHHHHhhhhcccCC------CchHHHHHHHHh
Q psy15122 232 QKEALTIVARSLDPNKPTVMLEAVKVLAAVCLIPP------DGHDKVIKAITM 278 (927)
Q Consensus 232 ~~~~i~~la~sl~~~~~~~~~~vlelLaalc~~~~------~Gh~~VL~Al~~ 278 (927)
...-+..|+.......-+.+..++|.|+-+|+..+ ||...+++++..
T Consensus 106 ~~~vvralvaiae~~~D~lr~~cletL~El~l~~P~lv~~~gG~~~L~~~l~d 158 (371)
T PF14664_consen 106 PRGVVRALVAIAEHEDDRLRRICLETLCELALLNPELVAECGGIRVLLRALID 158 (371)
T ss_pred CHHHHHHHHHHHhCCchHHHHHHHHHHHHHHhhCHHHHHHcCCHHHHHHHHHh
Confidence 33446667766666777788889999999988864 477777777654
No 79
>KOG0391|consensus
Probab=33.92 E-value=80 Score=41.04 Aligned_cols=11 Identities=36% Similarity=0.449 Sum_probs=5.0
Q ss_pred HHHHhhhccch
Q psy15122 433 ILQHLLFIRDD 443 (927)
Q Consensus 433 ilQhllli~~d 443 (927)
.-+|.+..+.+
T Consensus 1636 l~~h~l~spP~ 1646 (1958)
T KOG0391|consen 1636 LKQHVLFSPPL 1646 (1958)
T ss_pred ccccccCCCCc
Confidence 34555544443
No 80
>KOG4302|consensus
Probab=33.70 E-value=4.6e+02 Score=32.60 Aligned_cols=67 Identities=15% Similarity=0.051 Sum_probs=34.3
Q ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCC-CCCcccchhccHH-HHHHHHHHHHHHHHH
Q psy15122 734 EIMEPFAKEVRQKITLLSNMSKNMMTLYGDLAEFYTFDK-NIYTLEEFFTDIK-TFKDSFYQAWQENIK 800 (927)
Q Consensus 734 ~~m~~F~~~a~~~~~~L~~~~~~~~~~~~~l~~yfgEd~-~~~~~eefF~~~~-~F~~~f~~a~~en~~ 800 (927)
..+...++..+.+.+.=...+..+......++.=.|+.- -......++.++. .+++.|..-..+..+
T Consensus 106 ~~l~~~le~lr~qk~eR~~ef~el~~qie~l~~~l~g~~~~~~~~~~D~~dlsl~kLeelr~~L~~L~~ 174 (660)
T KOG4302|consen 106 ESLKPYLEGLRKQKDERRAEFKELYHQIEKLCEELGGPEDLPSFLIADESDLSLEKLEELREHLNELQK 174 (660)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccCCcccccCcccccHHHHHHHHHHHHHHHH
Confidence 334444555554444444445555555555555555540 0113445566666 777777665555443
No 81
>PF11707 Npa1: Ribosome 60S biogenesis N-terminal; InterPro: IPR021714 Npa1p is required for ribosome biogenesis and operates in the same functional environment as Rsa3p and Dbp6p during early maturation of 60S ribosomal subunits []. The protein partners of Npa1p include eight putative helicases as well as the novel Npa2p factor. Npa1p can also associate with a subset of H/ACA and C/D small nucleolar RNPs (snoRNPs) involved in the chemical modification of residues in the vicinity of the peptidyl transferase centre []. The protein has also been referred to as Urb1, and this domain at the N-terminal is one of several conserved regions along the length.
Probab=33.39 E-value=3.4e+02 Score=30.67 Aligned_cols=92 Identities=21% Similarity=0.333 Sum_probs=57.5
Q ss_pred HHHHHHHHHHHHHhcHhhHHHHhcchhHHHHHHHhcCCCChhHHHHHHHHhhhhcccCCCc-hHHHHHHHHhhcccccCc
Q psy15122 208 VQYECVRCIRAIMNNTVGLKQMFGQKEALTIVARSLDPNKPTVMLEAVKVLAAVCLIPPDG-HDKVIKAITMSGELKGKE 286 (927)
Q Consensus 208 ~~~e~vkCLkaimN~~~Gl~~vl~~~~~i~~la~sl~~~~~~~~~~vlelLaalc~~~~~G-h~~VL~Al~~~~~~~e~~ 286 (927)
.+.....+.|.|++++ +..|.+++.+.+.....-+|.||++++-+..+. -..|+++|+-.-.
T Consensus 42 ~~~~g~~l~~~iL~~~------------~k~lyr~L~~~~~~~~~~~LrLL~~iv~f~~g~~a~~v~~~fd~~~~----- 104 (330)
T PF11707_consen 42 FQSYGLELIRSILQNH------------LKLLYRSLSSSKPSLTNPALRLLTAIVSFDGGALAREVLRSFDFSLK----- 104 (330)
T ss_pred HHHHHHHHHHHHHHHH------------HHHHHHHhCcCcHHHHHHHHHHHHHHHccCCHHHHHHHHHhcCCchh-----
Confidence 3444667777777664 556778898888777778999999999875222 3446666643210
Q ss_pred ChHHHHHHHh--c-cCCC--------HHHHHHHHHHHHHHHcCc
Q psy15122 287 RFQPVVQGLM--V-KGNN--------EALRTACLQLINAIVATP 319 (927)
Q Consensus 287 RF~~lv~~L~--~-~~~~--------~~~~~~~m~lIN~Lv~s~ 319 (927)
.+..-+. + .... ..+|++.+.|+=+++...
T Consensus 105 ---~l~kll~~~~~~~~~~~~~~~~~~siR~~fI~F~Lsfl~~~ 145 (330)
T PF11707_consen 105 ---SLPKLLTPRKKEKEKDSESSKSKPSIRTNFIRFWLSFLSSG 145 (330)
T ss_pred ---hHHHHhccccccccccccccccCcCHHHHHHHHHHHHHccC
Confidence 1111111 1 0111 289999999998887654
No 82
>KOG0566|consensus
Probab=32.90 E-value=47 Score=41.92 Aligned_cols=32 Identities=25% Similarity=0.487 Sum_probs=16.1
Q ss_pred hhHHHHHHH-----HHHHHHhChHHHHHHHhhcCChhHHHHHH
Q psy15122 320 DDLEFRLHL-----RNEIMRVGLYDLLDALEKDASEDVSVQLK 357 (927)
Q Consensus 320 ~dl~~Ri~l-----R~Ef~~~GL~eil~~L~~~~~~~L~~ql~ 357 (927)
.|++.||.+ |.+...-.++.++ +.+.|..|+.
T Consensus 721 GDFNYRI~l~nEEVr~~v~~~d~~kL~------e~DQL~~q~~ 757 (1080)
T KOG0566|consen 721 GDFNYRIDLSNEEVRRLVRNQDLDKLL------EYDQLTQQMN 757 (1080)
T ss_pred cccceeecCCHHHHHHHHHhccHHHHh------hHHHHHHHHh
Confidence 577777743 4444444433333 3445555654
No 83
>PRK11637 AmiB activator; Provisional
Probab=32.27 E-value=8.8e+02 Score=28.38 Aligned_cols=23 Identities=4% Similarity=0.007 Sum_probs=12.4
Q ss_pred HHhhhHHHHHHHHHHHHHHHHHH
Q psy15122 735 IMEPFAKEVRQKITLLSNMSKNM 757 (927)
Q Consensus 735 ~m~~F~~~a~~~~~~L~~~~~~~ 757 (927)
.+..=+..++.+++..+..+...
T Consensus 107 ~l~~eI~~~q~~l~~~~~~l~~r 129 (428)
T PRK11637 107 ELNASIAKLEQQQAAQERLLAAQ 129 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555666666655555543
No 84
>PF10165 Ric8: Guanine nucleotide exchange factor synembryn; InterPro: IPR019318 Ric8 is involved in the EGL-30 neurotransmitter signalling pathway []. It is a guanine nucleotide exchange factor [] that regulates neurotransmitter secretion.
Probab=31.97 E-value=1.3e+02 Score=35.54 Aligned_cols=82 Identities=17% Similarity=0.224 Sum_probs=49.1
Q ss_pred hHHHHHHHhccCCchhHHHHhhhhhhhhhhcchhhhcCcCCCC--CCCcchhhHHHHHHHHHHHHHHhcHhhHHHHhcch
Q psy15122 156 CIESLRIALTNHPLSWVNEFVLQDNKNFRKYPIAFLYPRFPSR--SRNDSRYDRVQYECVRCIRAIMNNTVGLKQMFGQK 233 (927)
Q Consensus 156 ~l~~Lrv~L~t~~~sWv~~F~~~Gl~~Ll~~~l~~ll~~l~~~--~~~~~~~~~~~~e~vkCLkaimN~~~Gl~~vl~~~ 233 (927)
||..||+..|.. ..|-.=|-.+|+..|+.+ ..+... ......+.....|.+|||.-+|-+..-....+.+.
T Consensus 1 ~L~~LRiLsRd~-~~~~~l~~~~~l~~L~~~------a~l~~~~~~~~~~~~~~v~~EALKCL~N~lf~s~~aR~~~~~~ 73 (446)
T PF10165_consen 1 CLETLRILSRDP-TGLDPLFTEEGLSTLLKH------AGLSESDEDEFESPDPDVSREALKCLCNALFLSPSARQIFVDL 73 (446)
T ss_pred CHHHHHHHccCc-ccchhhccHHHHHHHHHh------cCCcccccccccCCChHHHHHHHHHHHHHHhCCHHHHHHHHHc
Confidence 688899988873 233333335788888774 112110 00123345677899999997776666555666555
Q ss_pred hHHHHHHHhcC
Q psy15122 234 EALTIVARSLD 244 (927)
Q Consensus 234 ~~i~~la~sl~ 244 (927)
.....++..+.
T Consensus 74 ~~~~~l~~~Lk 84 (446)
T PF10165_consen 74 GLAEKLCERLK 84 (446)
T ss_pred CcHHHHHHHHH
Confidence 66666665543
No 85
>KOG0162|consensus
Probab=31.96 E-value=70 Score=39.25 Aligned_cols=10 Identities=30% Similarity=0.710 Sum_probs=5.1
Q ss_pred HHHHHHHhCC
Q psy15122 86 KFEDMLNDMN 95 (927)
Q Consensus 86 ~F~~lle~ln 95 (927)
-|+.-|..|+
T Consensus 253 dfq~Tl~AM~ 262 (1106)
T KOG0162|consen 253 DFQETLHAMK 262 (1106)
T ss_pred HHHHHHHHhe
Confidence 4555555544
No 86
>COG4575 ElaB Uncharacterized conserved protein [Function unknown]
Probab=31.73 E-value=3.5e+02 Score=25.30 Aligned_cols=74 Identities=9% Similarity=0.127 Sum_probs=49.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhccCCCCCcchhHHHHHhhhHHHHHHHHHHH-HHHHHHHHHHHHHHHHHcccCCCC
Q psy15122 697 DVIQNSIRQMENNIKNLETDIQNCKQAPVANENDKFLEIMEPFAKEVRQKITLL-SNMSKNMMTLYGDLAEFYTFDKNI 774 (927)
Q Consensus 697 ~~l~~~~~~L~~~l~~l~~~l~~~~~~~~~~~~D~f~~~m~~F~~~a~~~~~~L-~~~~~~~~~~~~~l~~yfgEd~~~ 774 (927)
+++..+++.|-..+..+-+.- .+.+ .++-+....+...-+.+++.++... ..-.+..+......=.|-+++|-.
T Consensus 11 ~~l~~el~~L~d~lEevL~ss--g~~a--~~e~~~lR~r~~~~Lk~~r~rl~~~~d~v~~~sk~a~~~tD~yV~e~PWq 85 (104)
T COG4575 11 DQLLAELQELLDTLEEVLKSS--GSLA--GDEAEELRSKAESALKEARDRLGDTGDAVVQRSKAAADATDDYVRENPWQ 85 (104)
T ss_pred HHHHHHHHHHHHHHHHHHHhc--ccch--hhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHcCCch
Confidence 667777777766665543311 1111 3445567888888899999999888 445566777777777888888853
No 87
>PRK14849 putative lipoprotein/autotransporter domain-containing protein; Provisional
Probab=31.40 E-value=32 Score=46.58 Aligned_cols=18 Identities=11% Similarity=0.346 Sum_probs=13.3
Q ss_pred cccCCCchHHHHHHHHhh
Q psy15122 262 CLIPPDGHDKVIKAITMS 279 (927)
Q Consensus 262 c~~~~~Gh~~VL~Al~~~ 279 (927)
..+.-+||.+.+.+|+..
T Consensus 1072 ~~~d~ng~~qtvg~l~~~ 1089 (1806)
T PRK14849 1072 AIVDLNGSTQTVETFTGQ 1089 (1806)
T ss_pred ceEeccCchhhhhhhccc
Confidence 444446999999999775
No 88
>KOG2611|consensus
Probab=31.18 E-value=2.7e+02 Score=33.03 Aligned_cols=116 Identities=20% Similarity=0.344 Sum_probs=64.0
Q ss_pred HHHHHHHHHHHHHhcHhhHHHHhcchhHHHHHHHhcCCCChhH-HHHHHHHhh-----hhcccCCCchHHHHHHHHhhcc
Q psy15122 208 VQYECVRCIRAIMNNTVGLKQMFGQKEALTIVARSLDPNKPTV-MLEAVKVLA-----AVCLIPPDGHDKVIKAITMSGE 281 (927)
Q Consensus 208 ~~~e~vkCLkaimN~~~Gl~~vl~~~~~i~~la~sl~~~~~~~-~~~vlelLa-----alc~~~~~Gh~~VL~Al~~~~~ 281 (927)
+..+|-.||+++-....|...++.. .++..+++.-.-..+.+ +..++.+|- ..|.-
T Consensus 127 m~~d~Y~cL~~Va~~e~G~~~Lia~-G~~~~~~Q~y~~~~~~~d~alal~Vlll~~~~~~cw~----------------- 188 (698)
T KOG2611|consen 127 MLEDCYECLYLVATAEAGLMTLIAS-GGLRVIAQMYELPDGSHDMALALKVLLLLVSKLDCWS----------------- 188 (698)
T ss_pred HHHHHHHHHHHHhcCCchhHHHHhc-CchHHHHHHHhCCCCchhHHHHHHHHHHHHHhcccCc-----------------
Confidence 3477999999999999999998853 67888886543333332 333333321 12221
Q ss_pred cccCcChHHHHHHHhcc--CCCHHHHHHHHHHHHHHHcCchhH----HHHHHHHHHHHHhChHHHHH
Q psy15122 282 LKGKERFQPVVQGLMVK--GNNEALRTACLQLINAIVATPDDL----EFRLHLRNEIMRVGLYDLLD 342 (927)
Q Consensus 282 ~~e~~RF~~lv~~L~~~--~~~~~~~~~~m~lIN~Lv~s~~dl----~~Ri~lR~Ef~~~GL~eil~ 342 (927)
....||-.++..+... ..+...+--...++-+++.++..- -.|-.+..+-++.|+-.|+.
T Consensus 189 -e~~~~flali~~va~df~~~~~a~KfElc~lL~~vl~~~~~e~~~~pl~~~~w~~~l~~G~~~IL~ 254 (698)
T KOG2611|consen 189 -ETIERFLALIAAVARDFAVLHNALKFELCHLLSAVLSSEYSELLHEPLRSMNWADYLRTGVVAILQ 254 (698)
T ss_pred -CCHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhCChHHhccChhhhcchHHHHHHHHHHHHh
Confidence 1234455555544211 122233334445555554443311 12333557888889988887
No 89
>PF12037 DUF3523: Domain of unknown function (DUF3523); InterPro: IPR021911 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 257 to 277 amino acids in length. This domain is found associated with PF00004 from PFAM. This domain has a conserved LER sequence motif.
Probab=30.95 E-value=56 Score=35.83 Aligned_cols=27 Identities=22% Similarity=0.252 Sum_probs=21.7
Q ss_pred ccccccccchhhhhchhHHHHHHHHHH
Q psy15122 600 NIINGKQACEEVKQSKKLAKILELILL 626 (927)
Q Consensus 600 ~i~~v~~A~~el~~S~~f~~lL~~IL~ 626 (927)
.|+....|..+|.+|+.=+++|+++-.
T Consensus 33 aLERaAkAlrel~~S~~Ak~afel~k~ 59 (276)
T PF12037_consen 33 ALERAAKALRELNSSPHAKKAFELMKK 59 (276)
T ss_pred HHHHHHHHHHHHhcChhHHHHHHHHHH
Confidence 455566889999999999999998753
No 90
>PF04625 DEC-1_N: DEC-1 protein, N-terminal region; InterPro: IPR006719 The defective chorion-1 gene (dec-1) in Drosophila encodes follicle cell proteins necessary for proper eggshell assembly. Multiple products of the dec-1 gene are formed by alternative RNA splicing and proteolytic processing []. Cleavage products include S80 (80 kDa) which is incorporated into the eggshell, and further proteolysis of S80 gives S60 (60 kDa). This domain is present at the N-terminal of these proteins.; GO: 0005213 structural constituent of chorion, 0007304 chorion-containing eggshell formation, 0005576 extracellular region, 0042600 chorion
Probab=30.39 E-value=92 Score=34.47 Aligned_cols=21 Identities=14% Similarity=0.407 Sum_probs=14.3
Q ss_pred hHHHHHhhhHHHHHHHHHHHH
Q psy15122 731 KFLEIMEPFAKEVRQKITLLS 751 (927)
Q Consensus 731 ~f~~~m~~F~~~a~~~~~~L~ 751 (927)
++..++..|-.....++..|+
T Consensus 276 rieakL~AFerQVI~EL~~LQ 296 (407)
T PF04625_consen 276 RIEAKLRAFERQVIAELKMLQ 296 (407)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 366778888777777665554
No 91
>PHA03211 serine/threonine kinase US3; Provisional
Probab=29.27 E-value=58 Score=38.67 Aligned_cols=9 Identities=22% Similarity=0.327 Sum_probs=5.0
Q ss_pred hCCccCchh
Q psy15122 674 KFPECLKFG 682 (927)
Q Consensus 674 ~~p~ll~f~ 682 (927)
++|.+..+.
T Consensus 218 ~HpnIv~l~ 226 (461)
T PHA03211 218 SHPAVLALL 226 (461)
T ss_pred CCCCCCcEE
Confidence 456665554
No 92
>PF04420 CHD5: CHD5-like protein; InterPro: IPR007514 Members of this family are probably coiled-coil proteins that are similar to the CHD5 (Congenital heart disease 5) protein. The exact molecular function of these eukaryotic proteins is unknown.; PDB: 3SJA_H 3SJC_D 3SJB_D 3ZS8_D 3VLC_E.
Probab=28.92 E-value=2.4e+02 Score=28.44 Aligned_cols=66 Identities=11% Similarity=0.182 Sum_probs=44.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhccCCCCCcchhHHH--HHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Q psy15122 697 DVIQNSIRQMENNIKNLETDIQNCKQAPVANENDKFLE--IMEPFAKEVRQKITLLSNMSKNMMTLYGDLAEFY 768 (927)
Q Consensus 697 ~~l~~~~~~L~~~l~~l~~~l~~~~~~~~~~~~D~f~~--~m~~F~~~a~~~~~~L~~~~~~~~~~~~~l~~yf 768 (927)
.....+..+|+.++.++.+|+...+ ..|.|.. ++..-++.+..+++.+.+.....+..+.....+.
T Consensus 36 ~~~~~~~~~l~~Ei~~l~~E~~~iS------~qDeFAkwaKl~Rk~~kl~~el~~~~~~~~~~~~~~~~~~~~~ 103 (161)
T PF04420_consen 36 SKSSKEQRQLRKEILQLKRELNAIS------AQDEFAKWAKLNRKLDKLEEELEKLNKSLSSEKSSFDKSLSKV 103 (161)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHTTS-------TTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred ccccHHHHHHHHHHHHHHHHHHcCC------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5566778899999999999887643 4455543 3555666677777777777777666666666544
No 93
>KOG0301|consensus
Probab=28.90 E-value=5.8e+02 Score=31.58 Aligned_cols=36 Identities=19% Similarity=0.299 Sum_probs=28.7
Q ss_pred hhHHHHHHHHHHHHHHhcHhhHHHHhcchhHHHHHH
Q psy15122 205 YDRVQYECVRCIRAIMNNTVGLKQMFGQKEALTIVA 240 (927)
Q Consensus 205 ~~~~~~e~vkCLkaimN~~~Gl~~vl~~~~~i~~la 240 (927)
+...+.-+||||.-++++..|.+-+..+.+.+...+
T Consensus 601 ~~an~ll~vR~L~N~f~~~~g~~~~~s~~~~i~~~~ 636 (745)
T KOG0301|consen 601 DPANQLLVVRCLANLFSNPAGRELFMSRLESILDPV 636 (745)
T ss_pred chhHHHHHHHHHHHhccCHHHHHHHHHHHHHHhhhh
Confidence 355678899999999999999999988776654433
No 94
>PF09849 DUF2076: Uncharacterized protein conserved in bacteria (DUF2076); InterPro: IPR018648 This family of hypothetical prokaryotic proteins has no known function but includes putative perimplasmic ligand-binding sensor proteins.
Probab=28.88 E-value=1.1e+02 Score=33.26 Aligned_cols=17 Identities=35% Similarity=0.472 Sum_probs=12.5
Q ss_pred HHHHHHHhhhhhcccCC
Q psy15122 519 EAKLVQAQKTLEDLSSG 535 (927)
Q Consensus 519 ea~~~~le~~i~~l~~~ 535 (927)
|+-|+.+..+|++|+..
T Consensus 54 E~AL~~a~~ri~eLe~q 70 (247)
T PF09849_consen 54 EQALKQAQARIQELEAQ 70 (247)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34467788888888766
No 95
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=28.50 E-value=6.9e+02 Score=26.00 Aligned_cols=16 Identities=6% Similarity=0.102 Sum_probs=10.0
Q ss_pred hhcCCCchhhHHHHHh
Q psy15122 395 VMDSACEPYLLSILQH 410 (927)
Q Consensus 395 v~~t~a~~~f~sil~~ 410 (927)
.+..|..|||....++
T Consensus 21 fk~vPQ~PHF~pL~~~ 36 (190)
T PF05266_consen 21 FKKVPQSPHFSPLQEF 36 (190)
T ss_pred HHcCCCCCCChhhhcC
Confidence 3456889999443333
No 96
>KOG2002|consensus
Probab=28.09 E-value=1.1e+03 Score=30.62 Aligned_cols=153 Identities=14% Similarity=0.167 Sum_probs=78.9
Q ss_pred hhhhcccCCCchHHHHHHHHhhcccccCcChHHHHH--HHh-ccCCCHHHHHHHHHHHHHHHcCchhHHHHHHHHHHHHH
Q psy15122 258 LAAVCLIPPDGHDKVIKAITMSGELKGKERFQPVVQ--GLM-VKGNNEALRTACLQLINAIVATPDDLEFRLHLRNEIMR 334 (927)
Q Consensus 258 Laalc~~~~~Gh~~VL~Al~~~~~~~e~~RF~~lv~--~L~-~~~~~~~~~~~~m~lIN~Lv~s~~dl~~Ri~lR~Ef~~ 334 (927)
....|++.-+-.+.++-|++.+-.+.- .--..+|. .+. ...+...|+-+.+.+-++.-..+.+-..-.||-+.|.-
T Consensus 204 gig~Cf~kl~~~~~a~~a~~ralqLdp-~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n~~nP~~l~~LAn~fyf 282 (1018)
T KOG2002|consen 204 GIGHCFWKLGMSEKALLAFERALQLDP-TCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKENNENPVALNHLANHFYF 282 (1018)
T ss_pred hhhhHHHhccchhhHHHHHHHHHhcCh-hhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHhh
Confidence 455676655555667777766543311 11111121 111 23345667777777777666566666667777777777
Q ss_pred hChHHHHHHHh-----hcCChhHHHHHHHHh----hhhHhHHHHHHHhc------------------hh---cccccCCH
Q psy15122 335 VGLYDLLDALE-----KDASEDVSVQLKVFI----EHKEEDYYEFIQRF------------------DN---VRMEIDDV 384 (927)
Q Consensus 335 ~GL~eil~~L~-----~~~~~~L~~ql~~f~----~~~~~D~~el~~r~------------------~~---~~~d~~~~ 384 (927)
-|=++....|- +..++.+..+= .|. .|...|++.-...+ .. -+.|+...
T Consensus 283 K~dy~~v~~la~~ai~~t~~~~~~aes-~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s 361 (1018)
T KOG2002|consen 283 KKDYERVWHLAEHAIKNTENKSIKAES-FYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEES 361 (1018)
T ss_pred cccHHHHHHHHHHHHHhhhhhHHHHHH-HHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHH
Confidence 66655444332 22222222110 011 12334444432222 00 24677778
Q ss_pred HHHHHHHHHHhhcCCCchhhHHHHHhhhhcc
Q psy15122 385 NDCFETVRNMVMDSACEPYLLSILQHLLFIR 415 (927)
Q Consensus 385 ~~~f~~l~~~v~~t~a~~~f~sil~~ll~~~ 415 (927)
.-||+.|.... |...--..||.+|....
T Consensus 362 ~~~fEkv~k~~---p~~~etm~iLG~Lya~~ 389 (1018)
T KOG2002|consen 362 KFCFEKVLKQL---PNNYETMKILGCLYAHS 389 (1018)
T ss_pred HHHHHHHHHhC---cchHHHHHHHHhHHHhh
Confidence 88898886654 33344467888887555
No 97
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=27.63 E-value=95 Score=38.38 Aligned_cols=6 Identities=50% Similarity=0.661 Sum_probs=2.4
Q ss_pred hhHHHH
Q psy15122 615 KKLAKI 620 (927)
Q Consensus 615 ~~f~~l 620 (927)
+.|.++
T Consensus 602 ~~~a~~ 607 (620)
T PRK14948 602 KNLADF 607 (620)
T ss_pred HHHHHH
Confidence 334443
No 98
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=27.35 E-value=3.8e+02 Score=25.04 Aligned_cols=69 Identities=17% Similarity=0.244 Sum_probs=49.2
Q ss_pred hhccCHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCcchhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15122 691 AARVSTDVIQNSIRQMENNIKNLETDIQNCKQAPVANENDKFLEIMEPFAKEVRQKITLLSNMSKNMMTLYGDLAE 766 (927)
Q Consensus 691 Askvs~~~l~~~~~~L~~~l~~l~~~l~~~~~~~~~~~~D~f~~~m~~F~~~a~~~~~~L~~~~~~~~~~~~~l~~ 766 (927)
|.+-.++.+...+....+.+..++..+++.... +. ...+.--+.+.+.++..+...++.+.....-+++
T Consensus 32 a~~~~~~~l~~~~~~~~~Rl~~lE~~l~~LPt~------~d-v~~L~l~l~el~G~~~~l~~~l~~v~~~~~lLlE 100 (106)
T PF10805_consen 32 AKREDIEKLEERLDEHDRRLQALETKLEHLPTR------DD-VHDLQLELAELRGELKELSARLQGVSHQLDLLLE 100 (106)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCH------HH-HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 556778888888999999999999999875332 22 3445666777777777777777777665555444
No 99
>PF07946 DUF1682: Protein of unknown function (DUF1682); InterPro: IPR012879 The members of this family are all hypothetical eukaryotic proteins of unknown function. One member (Q920S6 from SWISSPROT) is described as being an adipocyte-specific protein, but no evidence of this was found.
Probab=27.26 E-value=1.7e+02 Score=32.94 Aligned_cols=10 Identities=20% Similarity=0.537 Sum_probs=4.8
Q ss_pred HHHHhccccc
Q psy15122 623 LILLMGNYMN 632 (927)
Q Consensus 623 ~IL~iGNymN 632 (927)
++-..|+|+.
T Consensus 184 ~l~~~~~~l~ 193 (321)
T PF07946_consen 184 ALNKAGDYLE 193 (321)
T ss_pred HHHhhhhhee
Confidence 3335555554
No 100
>cd07639 BAR_ACAP1 The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 1. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. ACAP1 (ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 1), also called centaurin beta-1, is an Arf6-specific GTPase activating protein (GAP) which mediates Arf6 signaling. Arf6 is involved in the regulation of endocytosis, phagocytosis, cell adhesion and migration. ACAP1 also participates in the cargo sorting and recycling of the transferrin receptor and integrin beta1. It may also play a role in innate immune responses. ACAP1 contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, and C-terminal ankyrin (ANK) repeats. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=26.99 E-value=7.6e+02 Score=25.97 Aligned_cols=26 Identities=8% Similarity=0.220 Sum_probs=19.9
Q ss_pred cCHHHHHHHHHHHHHHHHHHHHHHhh
Q psy15122 694 VSTDVIQNSIRQMENNIKNLETDIQN 719 (927)
Q Consensus 694 vs~~~l~~~~~~L~~~l~~l~~~l~~ 719 (927)
..++.++.++.+|+..|+++.+....
T Consensus 2 ~~i~~~E~~~~~le~~l~kl~K~~k~ 27 (200)
T cd07639 2 AAIEEVEAEVSELETRLEKLVKLGSG 27 (200)
T ss_pred chHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 46778888888888888888776543
No 101
>KOG0994|consensus
Probab=26.68 E-value=5.2e+02 Score=33.93 Aligned_cols=21 Identities=10% Similarity=0.248 Sum_probs=16.5
Q ss_pred hhHHHHHHHHHHhcccccCCC
Q psy15122 615 KKLAKILELILLMGNYMNSGS 635 (927)
Q Consensus 615 ~~f~~lL~~IL~iGNymN~gs 635 (927)
..-+.+=.+|-.|+||++..+
T Consensus 1468 ~s~~el~~Li~~v~~Flt~~~ 1488 (1758)
T KOG0994|consen 1468 ESNRELRNLIQQVRDFLTQPD 1488 (1758)
T ss_pred HHHHHHHHHHHHHHHHhcCCC
Confidence 445667788999999999754
No 102
>PRK10404 hypothetical protein; Provisional
Probab=26.16 E-value=4.5e+02 Score=24.49 Aligned_cols=73 Identities=7% Similarity=0.049 Sum_probs=46.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhccCCCCCcchhHHHHHhhhHHHHHHHHHHHHHHHHH-HHHHHHHHHHHcccCCC
Q psy15122 697 DVIQNSIRQMENNIKNLETDIQNCKQAPVANENDKFLEIMEPFAKEVRQKITLLSNMSKN-MMTLYGDLAEFYTFDKN 773 (927)
Q Consensus 697 ~~l~~~~~~L~~~l~~l~~~l~~~~~~~~~~~~D~f~~~m~~F~~~a~~~~~~L~~~~~~-~~~~~~~l~~yfgEd~~ 773 (927)
+.|..|++.|...+..+-+.-... . ...-+.+.......+..++.++..+...+.. ........-.|--++|-
T Consensus 8 ~~l~~dl~~L~~dle~Ll~~~~~~--a--~e~~~~lR~r~~~~L~~ar~~l~~~~~~~~~~~k~aa~~td~yV~e~Pw 81 (101)
T PRK10404 8 TRIDDDLTLLSETLEEVLRSSGDP--A--DQKYVELKARAEKALDDVKKRVSQASDSYYYRAKQAVYRADDYVHEKPW 81 (101)
T ss_pred hHHHHHHHHHHHHHHHHHHHhhhh--h--HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhCcH
Confidence 456677777777666654432211 1 2233457777888888888888777665444 56666667777777764
No 103
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=25.00 E-value=2.1e+03 Score=30.99 Aligned_cols=98 Identities=11% Similarity=0.069 Sum_probs=62.9
Q ss_pred hhhhhHHHHHHHhccCCchhHHHHh-hhhhhhhhhcchhhhcCcCCCCCCCcchhhHHHHHHHHHHHHHHhcHhhHHHHh
Q psy15122 152 KMYSCIESLRIALTNHPLSWVNEFV-LQDNKNFRKYPIAFLYPRFPSRSRNDSRYDRVQYECVRCIRAIMNNTVGLKQMF 230 (927)
Q Consensus 152 ~~~~~l~~Lrv~L~t~~~sWv~~F~-~~Gl~~Ll~~~l~~ll~~l~~~~~~~~~~~~~~~e~vkCLkaimN~~~Gl~~vl 230 (927)
.+.+...+|+....++.-.| +..+ .+|+..|+.. | . . .....|..++.+|+.|.....--..++
T Consensus 420 vQ~~Av~aL~~L~~~~~e~~-~aIi~~ggIp~LV~L----L-~--------s-~s~~iQ~~A~~~L~nLa~~ndenr~aI 484 (2102)
T PLN03200 420 VQEELIRALSSLCCGKGGLW-EALGGREGVQLLISL----L-G--------L-SSEQQQEYAVALLAILTDEVDESKWAI 484 (2102)
T ss_pred HHHHHHHHHHHHhCCCHHHH-HHHHHcCcHHHHHHH----H-c--------C-CCHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 33445566666554433333 3333 4677777663 3 1 1 124567888899998875433333344
Q ss_pred cchhHHHHHHHhcCCCChhHHHHHHHHhhhhccc
Q psy15122 231 GQKEALTIVARSLDPNKPTVMLEAVKVLAAVCLI 264 (927)
Q Consensus 231 ~~~~~i~~la~sl~~~~~~~~~~vlelLaalc~~ 264 (927)
-+.++|..|+..|.+....++.++.-.|+-+|..
T Consensus 485 ieaGaIP~LV~LL~s~~~~iqeeAawAL~NLa~~ 518 (2102)
T PLN03200 485 TAAGGIPPLVQLLETGSQKAKEDSATVLWNLCCH 518 (2102)
T ss_pred HHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCC
Confidence 4568899999999999999998888788877764
No 104
>KOG1785|consensus
Probab=24.79 E-value=1.4e+02 Score=34.22 Aligned_cols=36 Identities=14% Similarity=0.011 Sum_probs=18.5
Q ss_pred ChHhHHHHHHHHHhccccccccccCCCChHHHHHHhcC
Q psy15122 108 PLANKKKMLLMHYKGTVTSYENKSKFDKPIEYIQYLSQ 145 (927)
Q Consensus 108 p~~~K~~li~~~~~~~~~~~~~~~~~~~P~~~i~~L~~ 145 (927)
.+++-|.|+.+-.+.=. .-.=.-.++|.+.++.|-+
T Consensus 46 ~l~k~~klmdkvv~~C~--~Prl~lknSPP~ilDiLPd 81 (563)
T KOG1785|consen 46 TLEKAWKLMDKVVKLCQ--NPRLNLKNSPPFILDILPD 81 (563)
T ss_pred HHHHHHHHHHHHHHHhc--CccccccCCCcHHHHhchh
Confidence 45677777654222110 0001225688888887743
No 105
>PF10458 Val_tRNA-synt_C: Valyl tRNA synthetase tRNA binding arm; InterPro: IPR019499 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the C-terminal domain of Valyl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Valyl-tRNA synthetase (6.1.1.9 from EC) is an alpha monomer that belongs to class Ia.; GO: 0000166 nucleotide binding, 0004832 valine-tRNA ligase activity, 0005524 ATP binding, 0006438 valyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 1IVS_B 1GAX_B.
Probab=23.83 E-value=3.4e+02 Score=22.94 Aligned_cols=62 Identities=18% Similarity=0.369 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhccCCCCCcchhHHHHHh-hhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15122 699 IQNSIRQMENNIKNLETDIQNCKQAPVANENDKFLEIME-PFAKEVRQKITLLSNMSKNMMTLYGD 763 (927)
Q Consensus 699 l~~~~~~L~~~l~~l~~~l~~~~~~~~~~~~D~f~~~m~-~F~~~a~~~~~~L~~~~~~~~~~~~~ 763 (927)
+.+++..|.+.+..++.++.....- . .+..|..+.- .-++.-+.++..+...+..+......
T Consensus 2 ~~~E~~rL~Kel~kl~~~i~~~~~k--L-~n~~F~~kAP~eVve~er~kl~~~~~~~~~l~~~l~~ 64 (66)
T PF10458_consen 2 VEAEIERLEKELEKLEKEIERLEKK--L-SNENFVEKAPEEVVEKEREKLEELEEELEKLEEALEQ 64 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH--H-CSTTHHHHS-CCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH--H-cCccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4556666667777666666543211 1 1223544433 23455566666666666666655544
No 106
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=23.61 E-value=4.1e+02 Score=27.70 Aligned_cols=53 Identities=19% Similarity=0.251 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHHHHhcHhhHHHHhcchhHHHHHHHhcCCCChhHHHHHHHHhhhhccc
Q psy15122 207 RVQYECVRCIRAIMNNTVGLKQMFGQKEALTIVARSLDPNKPTVMLEAVKVLAAVCLI 264 (927)
Q Consensus 207 ~~~~e~vkCLkaimN~~~Gl~~vl~~~~~i~~la~sl~~~~~~~~~~vlelLaalc~~ 264 (927)
-+...+..||.+|+.+-.+...++ +..+.....+.++.++..+++.|..+.-.
T Consensus 109 ~i~~~a~~~L~~i~~~~~~~~~~~-----~~~l~~~~~~Kn~~vR~~~~~~l~~~l~~ 161 (228)
T PF12348_consen 109 FIREAANNALDAIIESCSYSPKIL-----LEILSQGLKSKNPQVREECAEWLAIILEK 161 (228)
T ss_dssp HHHHHHHHHHHHHHTTS-H--HHH-----HHHHHHHTT-S-HHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHCCcHHHHH-----HHHHHHHHhCCCHHHHHHHHHHHHHHHHH
Confidence 355678999999998753122221 45566778899999999988877655433
No 107
>PRK12270 kgd alpha-ketoglutarate decarboxylase; Reviewed
Probab=23.58 E-value=1.5e+02 Score=38.25 Aligned_cols=23 Identities=4% Similarity=0.046 Sum_probs=14.3
Q ss_pred hHHHhhccCHHHHHHHHHHHHHH
Q psy15122 687 HVDRAARVSTDVIQNSIRQMENN 709 (927)
Q Consensus 687 ~v~~Askvs~~~l~~~~~~L~~~ 709 (927)
.+..|-+.++.++.+.++.|-+.
T Consensus 230 vIK~Ad~l~f~ef~~ay~dLV~K 252 (1228)
T PRK12270 230 AIKGAETMDFAQFWAAYEDIVRR 252 (1228)
T ss_pred cccccccCCHHHHHHHHHHHHHH
Confidence 34456667777777666666554
No 108
>PF14523 Syntaxin_2: Syntaxin-like protein; PDB: 2DNX_A.
Probab=23.47 E-value=4.6e+02 Score=23.67 Aligned_cols=57 Identities=12% Similarity=0.276 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHHHHHhhhccCCCCCcchhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15122 701 NSIRQMENNIKNLETDIQNCKQAPVANENDKFLEIMEPFAKEVRQKITLLSNMSKNMMTLYGDLAEF 767 (927)
Q Consensus 701 ~~~~~L~~~l~~l~~~l~~~~~~~~~~~~D~f~~~m~~F~~~a~~~~~~L~~~~~~~~~~~~~l~~y 767 (927)
..+..+...+..+++.+.....+ .....+.+.+..-.. ......+.+......+..+
T Consensus 3 ~~l~~in~~v~~l~k~~~~lGt~---~Ds~~lR~~i~~~~~-------~~~~l~k~~~~~l~~l~~~ 59 (102)
T PF14523_consen 3 SNLFKINQNVSQLEKLVNQLGTP---RDSQELREKIHQLIQ-------KTNQLIKEISELLKKLNSL 59 (102)
T ss_dssp HHHHHHHHHHHHHHHHHHHH-SS---S--HHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHS
T ss_pred hHHHHHHHHHHHHHHHHHHhCCc---cccHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHh
Confidence 34555555555565555544322 222345555543333 3444455555555555555
No 109
>KOG2759|consensus
Probab=22.59 E-value=1.3e+03 Score=27.12 Aligned_cols=139 Identities=14% Similarity=0.216 Sum_probs=76.0
Q ss_pred HHHHHHHHHHHHHhcHhhHHHHhcchhHHHHHHHhcCCCChhHHHHHHHHhhhhcccCC--CchHHHHHHHHhhcccccC
Q psy15122 208 VQYECVRCIRAIMNNTVGLKQMFGQKEALTIVARSLDPNKPTVMLEAVKVLAAVCLIPP--DGHDKVIKAITMSGELKGK 285 (927)
Q Consensus 208 ~~~e~vkCLkaimN~~~Gl~~vl~~~~~i~~la~sl~~~~~~~~~~vlelLaalc~~~~--~Gh~~VL~Al~~~~~~~e~ 285 (927)
...-|++||..+.-.+. ....+-..+.+..+...+.+....+-.+ -=+..|+|-- ++|-. +-+..+
T Consensus 173 ~~~~~~rcLQ~ll~~~e-yR~~~v~adg~~~l~~~l~s~~~~~QlQ---YqsifciWlLtFn~~~a--e~~~~~------ 240 (442)
T KOG2759|consen 173 YIQFAARCLQTLLRVDE-YRYAFVIADGVSLLIRILASTKCGFQLQ---YQSIFCIWLLTFNPHAA--EKLKRF------ 240 (442)
T ss_pred hHHHHHHHHHHHhcCcc-hhheeeecCcchhhHHHHhccCcchhHH---HHHHHHHHHhhcCHHHH--HHHhhc------
Confidence 45678999998887763 3333333455555665554333332211 1122344310 11111 112111
Q ss_pred cChHHHHHHHhccCCCHHHHHHHHHHHHHHHcCchhHHHHHHHHHHHHHhChHHHHHHHhh--cCChhHHHHHHHH
Q psy15122 286 ERFQPVVQGLMVKGNNEALRTACLQLINAIVATPDDLEFRLHLRNEIMRVGLYDLLDALEK--DASEDVSVQLKVF 359 (927)
Q Consensus 286 ~RF~~lv~~L~~~~~~~~~~~~~m~lIN~Lv~s~~dl~~Ri~lR~Ef~~~GL~eil~~L~~--~~~~~L~~ql~~f 359 (927)
.=++.+..-+......--+|+.|..|.|.| .+.++-+.+=.+-..+..+++...++.|.. ..+++|..-|+..
T Consensus 241 ~li~~L~~Ivk~~~KEKV~Rivlai~~Nll-~k~~~~~~~k~~~~~mv~~~v~k~l~~L~~rkysDEDL~~di~~L 315 (442)
T KOG2759|consen 241 DLIQDLSDIVKESTKEKVTRIVLAIFRNLL-DKGPDRETKKDIASQMVLCKVLKTLQSLEERKYSDEDLVDDIEFL 315 (442)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccCchhhHHHHHHHHHHhcCchHHHHHHHhcCCCcHHHHHHHHHH
Confidence 112233333322233445677777777766 777778888888889999999999998876 4555555555433
No 110
>COG4985 ABC-type phosphate transport system, auxiliary component [Inorganic ion transport and metabolism]
Probab=22.22 E-value=5.1e+02 Score=27.71 Aligned_cols=106 Identities=12% Similarity=0.224 Sum_probs=50.4
Q ss_pred CCcccceeeecccccccccccCCCCcchh-HHHHHHHHhhCCccCchhhhhhhHHHhhccCHHHHHHHHHHHHHHHHHHH
Q psy15122 636 RNGGAFGFEINFLTKLSSTKDIENKTTLL-HYLVDTIEQKFPECLKFGDELLHVDRAARVSTDVIQNSIRQMENNIKNLE 714 (927)
Q Consensus 636 ~~g~A~GFkLssL~KL~dtKs~d~k~TLL-h~l~~~v~~~~p~ll~f~~eL~~v~~Askvs~~~l~~~~~~L~~~l~~l~ 714 (927)
+.|++||.-++ ++++ ..-|- +-++..+.+..+.+.++.+.+..+ ...++.-+..++..++
T Consensus 139 ~~G~~yG~ll~-------~~~n--gq~l~Gd~l~~eLqkr~~~v~~l~~q~~k~----------~~~qv~~in~qlErLR 199 (289)
T COG4985 139 RGGQLYGKLLR-------FDSN--GQELDGDPLERELQKRLLEVETLRDQVDKM----------VEQQVRVINSQLERLR 199 (289)
T ss_pred cCcchhhheee-------eccC--CCcccCcHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHH
Confidence 45788886444 3443 22333 456677777666555555443322 2334444444444443
Q ss_pred HHHhhhccCCCCCcchhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Q psy15122 715 TDIQNCKQAPVANENDKFLEIMEPFAKEVRQKITLLSNMSKNMMTLYG 762 (927)
Q Consensus 715 ~~l~~~~~~~~~~~~D~f~~~m~~F~~~a~~~~~~L~~~~~~~~~~~~ 762 (927)
-+-...... ..-+|.|...+..=..+-..++..|+..+......+.
T Consensus 200 L~krrlQl~--g~Ld~~~q~~~~ae~seLq~r~~~l~~~L~~L~~e~~ 245 (289)
T COG4985 200 LEKRRLQLN--GQLDDEFQQHYVAEKSELQKRLAQLQTELDALRAELE 245 (289)
T ss_pred HHHHHHhhc--ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 322222222 3445656555544444444455555544444444333
No 111
>KOG0162|consensus
Probab=22.18 E-value=1.5e+02 Score=36.49 Aligned_cols=9 Identities=22% Similarity=0.560 Sum_probs=3.7
Q ss_pred CCCChHHHH
Q psy15122 132 KFDKPIEYI 140 (927)
Q Consensus 132 ~~~~P~~~i 140 (927)
+-..|++|+
T Consensus 227 Gi~~pe~Y~ 235 (1106)
T KOG0162|consen 227 GIQEPEYYV 235 (1106)
T ss_pred CcCCchhee
Confidence 334444443
No 112
>KOG0559|consensus
Probab=22.12 E-value=1.8e+02 Score=33.07 Aligned_cols=14 Identities=14% Similarity=0.242 Sum_probs=5.8
Q ss_pred ccCHHHHHHHHHHH
Q psy15122 693 RVSTDVIQNSIRQM 706 (927)
Q Consensus 693 kvs~~~l~~~~~~L 706 (927)
..|+.+|+..+..|
T Consensus 341 ~Mn~adIE~~i~~L 354 (457)
T KOG0559|consen 341 SMNFADIEKTIAGL 354 (457)
T ss_pred cccHHHHHHHHHHH
Confidence 34444444444433
No 113
>PF08045 CDC14: Cell division control protein 14, SIN component; InterPro: IPR012535 Cdc14 is a component of the septation initiation network (SIN) and is required for the localisation and activity of Sid1. Sid1 is a protein kinase that localises asymmetrically to one spindle pole body (SPB) in anaphase disappears prior to cell separation [], [].
Probab=22.04 E-value=3.5e+02 Score=29.62 Aligned_cols=98 Identities=13% Similarity=0.266 Sum_probs=65.8
Q ss_pred HHHHHHHHHHHHhcHhhHHHHhcchhHHHHHHHhcCCC-ChhHHHHHHHHhhhhcccCCCchHHHHHHHHhhcccccCcC
Q psy15122 209 QYECVRCIRAIMNNTVGLKQMFGQKEALTIVARSLDPN-KPTVMLEAVKVLAAVCLIPPDGHDKVIKAITMSGELKGKER 287 (927)
Q Consensus 209 ~~e~vkCLkaimN~~~Gl~~vl~~~~~i~~la~sl~~~-~~~~~~~vlelLaalc~~~~~Gh~~VL~Al~~~~~~~e~~R 287 (927)
..-+++.|..+|-.+..-..++....++..+..-+.+. .+.+...+++.|.++++-+ -.+++.+.+..=
T Consensus 108 i~~aL~vLQGl~LLHp~Sr~lF~r~~~m~lll~LL~~~~~~~i~~a~L~tLv~iLld~----------p~N~r~FE~~~G 177 (257)
T PF08045_consen 108 IALALRVLQGLCLLHPPSRKLFHREQNMELLLDLLSPSNPPAIQSACLDTLVCILLDS----------PENQRDFEELNG 177 (257)
T ss_pred HHHHHHHHHHHHHcCchHHHHHhhhhhHHHHHHHhccCCCchHHHHHHHHHHHHHHcC----------hHHHHHHHHhCC
Confidence 34467888888888888999998888888888888554 4555566778887777654 222222222233
Q ss_pred hHHHHHHHhccCCCHHHHHHHHHHHHHHH
Q psy15122 288 FQPVVQGLMVKGNNEALRTACLQLINAIV 316 (927)
Q Consensus 288 F~~lv~~L~~~~~~~~~~~~~m~lIN~Lv 316 (927)
...++.-|+....+.+++..|+-|+=..+
T Consensus 178 l~~v~~llk~~~~~~~~r~K~~EFL~fyl 206 (257)
T PF08045_consen 178 LSTVCSLLKSKSTDRELRLKCIEFLYFYL 206 (257)
T ss_pred HHHHHHHHccccccHHHhHHHHHHHHHHH
Confidence 44666666555567788888888875554
No 114
>PF06003 SMN: Survival motor neuron protein (SMN); InterPro: IPR010304 This family consists of several eukaryotic survival motor neuron (SMN) proteins. The Survival of Motor Neurons (SMN) protein, the product of the spinal muscular atrophy-determining gene, is part of a large macromolecular complex (SMN complex) that functions in the assembly of spliceosomal small nuclear ribonucleoproteins (snRNPs). The SMN complex functions as a specificity factor essential for the efficient assembly of Sm proteins on U snRNAs and likely protects cells from illicit, and potentially deleterious, non-specific binding of Sm proteins to RNAs.; GO: 0003723 RNA binding, 0006397 mRNA processing, 0005634 nucleus, 0005737 cytoplasm; PDB: 1MHN_A 4A4G_A 3S6N_M 4A4E_A 1G5V_A 4A4H_A 4A4F_A 2D9T_A.
Probab=21.69 E-value=31 Score=37.85 Aligned_cols=34 Identities=41% Similarity=0.749 Sum_probs=0.0
Q ss_pred CCCCCCCCC----------CCCCCCCCCCCCCCCCCCCCCCCCC
Q psy15122 554 IPTGPKGGP----------PPPPPPPGGMGPPPPPMPGMPGPPP 587 (927)
Q Consensus 554 ~ppppp~~p----------ppppp~pg~~~ppppp~pg~p~pp~ 587 (927)
||+|||++| .++|.+++.+|+.|..||.+|+||+
T Consensus 173 Pp~PPpp~P~lg~~g~k~~~~~p~~~~~~~~~~~~~~~~~~~~~ 216 (264)
T PF06003_consen 173 PPPPPPPPPGLGKHGEKFSGPPPSLSGWPPPFPSGPPMIPPPPP 216 (264)
T ss_dssp --------------------------------------------
T ss_pred CCCCCCCCCCcCcCCCCcccccCCCCCCCCcccccccCCCCccc
No 115
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=21.60 E-value=3.9e+02 Score=22.24 Aligned_cols=25 Identities=12% Similarity=0.450 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhh
Q psy15122 696 TDVIQNSIRQMENNIKNLETDIQNC 720 (927)
Q Consensus 696 ~~~l~~~~~~L~~~l~~l~~~l~~~ 720 (927)
++.|..+|..|...+..|..++...
T Consensus 5 id~Ls~dVq~L~~kvdqLs~dv~~l 29 (56)
T PF04728_consen 5 IDQLSSDVQTLNSKVDQLSSDVNAL 29 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5778888888888888888777653
No 116
>KOG3397|consensus
Probab=21.49 E-value=1e+02 Score=31.43 Aligned_cols=11 Identities=36% Similarity=0.504 Sum_probs=5.0
Q ss_pred HHHHHHHHHHH
Q psy15122 303 ALRTACLQLIN 313 (927)
Q Consensus 303 ~~~~~~m~lIN 313 (927)
++.-.|+.+||
T Consensus 23 ELlk~~~~LIN 33 (225)
T KOG3397|consen 23 ELLKESMTLIN 33 (225)
T ss_pred HHHHHHHHHHh
Confidence 34444444444
No 117
>PF07818 HCNGP: HCNGP-like protein; InterPro: IPR012479 This family comprises sequences bearing significant similarity to the mouse transcriptional regulator protein HCNGP (Q02614 from SWISSPROT). This protein is localised to the nucleus and is thought to be involved in the regulation of beta-2-microglobulin genes.
Probab=20.97 E-value=1.8e+02 Score=26.88 Aligned_cols=24 Identities=21% Similarity=0.432 Sum_probs=15.7
Q ss_pred HHHHHHHHHcccCCCCCc-ccchhc
Q psy15122 759 TLYGDLAEFYTFDKNIYT-LEEFFT 782 (927)
Q Consensus 759 ~~~~~l~~yfgEd~~~~~-~eefF~ 782 (927)
..|.+|+.|||-|.-.++ +-++|.
T Consensus 44 ~i~ekLi~~~~Ide~gTn~p~~i~d 68 (96)
T PF07818_consen 44 SILEKLIEFFGIDEYGTNFPKDIFD 68 (96)
T ss_pred HHHHHHHHHcCCCcccCCCChhhcC
Confidence 478999999998764332 334444
No 118
>PF05957 DUF883: Bacterial protein of unknown function (DUF883); InterPro: IPR010279 This family consists of several bacterial proteins of unknown function that include the Escherichia coli genes for ElaB, YgaM and YqjD.
Probab=20.92 E-value=4.5e+02 Score=23.67 Aligned_cols=71 Identities=7% Similarity=0.157 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhccCCCCCcchhHHHHHhhhHHHHHHHHHHHHHHH-HHHHHHHHHHHHHcccCC
Q psy15122 698 VIQNSIRQMENNIKNLETDIQNCKQAPVANENDKFLEIMEPFAKEVRQKITLLSNMS-KNMMTLYGDLAEFYTFDK 772 (927)
Q Consensus 698 ~l~~~~~~L~~~l~~l~~~l~~~~~~~~~~~~D~f~~~m~~F~~~a~~~~~~L~~~~-~~~~~~~~~l~~yfgEd~ 772 (927)
++..++.++...+..+-+.+.... ...-+.....+...+..++..+....... ..+......+-.|--+.|
T Consensus 2 ~l~~~l~~l~~d~~~l~~~~~~~~----~~~~~~~r~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~V~e~P 73 (94)
T PF05957_consen 2 DLKAELEQLRADLEDLARSAADLA----GEKADEARDRAEEALDDARDRAEDAADQAREQAREAAEQTEDYVRENP 73 (94)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCh
Confidence 466677777777766666554321 11234455666666667666666544332 334445555555555555
No 119
>KOG0559|consensus
Probab=20.79 E-value=1.8e+02 Score=32.92 Aligned_cols=12 Identities=25% Similarity=0.401 Sum_probs=6.5
Q ss_pred HhhhHHHHHHHH
Q psy15122 736 MEPFAKEVRQKI 747 (927)
Q Consensus 736 m~~F~~~a~~~~ 747 (927)
|+.|...|...+
T Consensus 287 Ms~F~KA~~~Al 298 (457)
T KOG0559|consen 287 MSGFSKAAAYAL 298 (457)
T ss_pred hhHHHHHHHHHh
Confidence 666665554443
No 120
>PF01698 FLO_LFY: Floricaula / Leafy protein; InterPro: IPR002910 This family consists of various plant development proteins which are homologues of Floricaula (FLO) and leafy (LFY) proteins which are floral meristem identity proteins. Mutations in the sequences of these proteins affect flower and leaf development.; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2VY1_A 2VY2_A.
Probab=20.45 E-value=34 Score=38.97 Aligned_cols=6 Identities=33% Similarity=0.711 Sum_probs=2.3
Q ss_pred hhhccC
Q psy15122 830 KALIDM 835 (927)
Q Consensus 830 k~~~~~ 835 (927)
+.++.|
T Consensus 342 ~plv~~ 347 (386)
T PF01698_consen 342 KPLVAI 347 (386)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 333333
No 121
>KOG0570|consensus
Probab=20.38 E-value=77 Score=32.78 Aligned_cols=25 Identities=40% Similarity=0.869 Sum_probs=0.0
Q ss_pred CCCcCCCCCCCCCCCC------------CCCCCCCCC
Q psy15122 544 DEVKAQVAAGIPTGPK------------GGPPPPPPP 568 (927)
Q Consensus 544 p~~~~~~~~~~ppppp------------~~pppppp~ 568 (927)
+...|....+-||||| +..||||||
T Consensus 1 m~~~~q~~S~~PpPPpY~k~yt~~ni~~~sAP~pP~p 37 (223)
T KOG0570|consen 1 MGFGPQTVSAYPPPPPYYKLYTDENINKGSAPPPPPP 37 (223)
T ss_pred CCCCcccccCCCcCChHHHHhhhccccCCCCCcccCC
No 122
>PF12010 DUF3502: Domain of unknown function (DUF3502); InterPro: IPR022627 This domain is about 140 amino acids in length and is functionally uncharacterised. It is found in bacteria C-terminal to PF01547 from PFAM.
Probab=20.35 E-value=3.7e+02 Score=26.15 Aligned_cols=43 Identities=16% Similarity=0.258 Sum_probs=30.3
Q ss_pred HHHHHcCchhHHHHH-HHHHHHHHhChHHHHHHHhhcCChhHHHHHHHHhhh
Q psy15122 312 INAIVATPDDLEFRL-HLRNEIMRVGLYDLLDALEKDASEDVSVQLKVFIEH 362 (927)
Q Consensus 312 IN~Lv~s~~dl~~Ri-~lR~Ef~~~GL~eil~~L~~~~~~~L~~ql~~f~~~ 362 (927)
...|..+.-|.+.-+ .++.++..+||++|+.. +..|++.|...
T Consensus 89 ~~~L~~G~vd~e~~~~~~~~kLk~AGidkV~~E--------~QkQlda~~~~ 132 (134)
T PF12010_consen 89 YPPLETGLVDPEEALPEFNEKLKAAGIDKVIAE--------LQKQLDAFLAA 132 (134)
T ss_pred HHHHHccCCCHHHHHHHHHHHHHHhChHHHHHH--------HHHHHHHHHHh
Confidence 344555554544433 78899999999999984 45699988653
No 123
>PF08524 rRNA_processing: rRNA processing; InterPro: IPR013730 This is a family of proteins that is are involved in rRNA processing []. In a localisation study they were found to localise to the nucleus and nucleolus []. The family also includes other metazoa members from plants to mammals where the protein has been named BR22 and is associated with TTF-1, thyroid transcription factor 1 []. In the lungs, the family binds TTF-1 to form a complex which influences the expression of the key lung surfactant protein-B (SP-B) and -C (SP-C), the small hydrophobic surfactant proteins that maintain surface tension in alveoli [].
Probab=20.23 E-value=6.4e+02 Score=25.15 Aligned_cols=13 Identities=31% Similarity=0.557 Sum_probs=11.2
Q ss_pred cchHHHHHHHHhc
Q psy15122 842 QGVMDSLLEALQT 854 (927)
Q Consensus 842 ~~v~D~Ll~~Lrs 854 (927)
.+.|+.||+.|+.
T Consensus 132 ~~rI~~LL~KIq~ 144 (148)
T PF08524_consen 132 KNRIEHLLEKIQK 144 (148)
T ss_pred HHHHHHHHHHHHh
Confidence 4689999999987
No 124
>PF05835 Synaphin: Synaphin protein; InterPro: IPR008849 This family consists of several eukaryotic synaphin 1 and 2 proteins. Synaphin/complexin is a cytosolic protein that preferentially binds to syntaxin within the SNARE complex. Synaphin promotes SNAREs to form precomplexes that oligomerise into higher order structures. A peptide from the central, syntaxin binding domain of synaphin competitively inhibits these two proteins from interacting and prevents SNARE complexes from oligomerising. It is thought that oligomerisation of SNARE complexes into a higher order structure creates a SNARE scaffold for efficient, regulated fusion of synaptic vesicles []. Synaphin promotes neuronal exocytosis by promoting interaction between the complementary syntaxin and synaptobrevin transmembrane regions that reside in opposing membranes prior to fusion [].; GO: 0019905 syntaxin binding, 0006836 neurotransmitter transport; PDB: 3RL0_m 3RK3_E 1L4A_E 1KIL_E.
Probab=20.12 E-value=2.5e+02 Score=27.71 Aligned_cols=34 Identities=26% Similarity=0.284 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy15122 798 NIKLREAEEKSIRVREAREKAENEKKDKAARKKA 831 (927)
Q Consensus 798 n~~~~e~eek~rr~~~akekaerek~er~~~kk~ 831 (927)
..+++.++++.|.++-++.+++|++....-|.|-
T Consensus 39 ~qeal~eeee~Rk~k~~k~eaERe~mRq~IRdKY 72 (139)
T PF05835_consen 39 YQEALREEEEERKAKHAKMEAEREKMRQHIRDKY 72 (139)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3333333444455666777777776443344443
No 125
>KOG4603|consensus
Probab=20.06 E-value=6.2e+02 Score=25.83 Aligned_cols=80 Identities=11% Similarity=0.232 Sum_probs=49.5
Q ss_pred hhhhhhHHHhhccCHHHHHHHHHHHHHHHHHHHHHHhhhccCCC-CCcchhHHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Q psy15122 682 GDELLHVDRAARVSTDVIQNSIRQMENNIKNLETDIQNCKQAPV-ANENDKFLEIMEPFAKEVRQKITLLSNMSKNMMTL 760 (927)
Q Consensus 682 ~~eL~~v~~Askvs~~~l~~~~~~L~~~l~~l~~~l~~~~~~~~-~~~~D~f~~~m~~F~~~a~~~~~~L~~~~~~~~~~ 760 (927)
..||..+.. .+++++++..+++|++.++....-|.+++.... ..+.|+ ..+...++.-..++.+-+..
T Consensus 106 eaEik~L~s--~Lt~eemQe~i~~L~kev~~~~erl~~~k~g~~~vtpedk---------~~v~~~y~~~~~~wrk~krm 174 (201)
T KOG4603|consen 106 EAEIKELSS--ALTTEEMQEEIQELKKEVAGYRERLKNIKAGTNHVTPEDK---------EQVYREYQKYCKEWRKRKRM 174 (201)
T ss_pred HHHHHHHHH--hcChHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHH---------HHHHHHHHHHHHHHHHHHHH
Confidence 344555543 378888888888888888888877776653311 123331 23444455555666666677
Q ss_pred HHHHHHHcccCC
Q psy15122 761 YGDLAEFYTFDK 772 (927)
Q Consensus 761 ~~~l~~yfgEd~ 772 (927)
|.++..-+-|+.
T Consensus 175 f~ei~d~~~e~~ 186 (201)
T KOG4603|consen 175 FREIIDKLLEGL 186 (201)
T ss_pred HHHHHHHHHcCC
Confidence 777777776653
No 126
>PF12238 MSA-2c: Merozoite surface antigen 2c; InterPro: IPR021060 This family of proteins are restricted to the apicomplexan Babesia bovis. Proteins in this entry are typically between 263 and 318 amino acids in length and plasma membrane glycoproteins. These antigens present on the merozoite surface (MSA) and are involved in the parasite invasion of the bovine erythrocyte. MSA-2c has been suggested as a possible antigen for a vaccine candidate [].
Probab=20.04 E-value=2.5e+02 Score=29.57 Aligned_cols=16 Identities=13% Similarity=0.158 Sum_probs=10.3
Q ss_pred ccCCHHHHHHHHHHHh
Q psy15122 380 EIDDVNDCFETVRNMV 395 (927)
Q Consensus 380 d~~~~~~~f~~l~~~v 395 (927)
+..+.+++|++|...|
T Consensus 42 s~q~~ee~F~~l~~sV 57 (205)
T PF12238_consen 42 SGQSDEEKFKSLFDSV 57 (205)
T ss_pred ccCCHHHHHHHHHHHH
Confidence 4456677777776655
Done!