RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy15122
(927 letters)
>3eg5_B Protein diaphanous homolog 1; protein-protein complex, RHO
proteins, formins, armadillo repeat, G-protein, GTPase,
alternative splicing; HET: GNP; 2.70A {Mus musculus}
PDB: 1z2c_B*
Length = 383
Score = 282 bits (721), Expect = 8e-87
Identities = 155/412 (37%), Positives = 244/412 (59%), Gaps = 34/412 (8%)
Query: 72 ENMLEKLNPEQLNQKFEDMLNDMNLSDEKKEPLRRQPLANKKKMLLMHYKGTVTSYENKS 131
L+ ++ EQ+ FE ML DMNL++EK++PLR + + K++M+ + + K
Sbjct: 4 AQSLQDISDEQVLVLFEQMLVDMNLNEEKQQPLREKDIVIKREMVSQYLHTSKAGMNQKE 63
Query: 132 KFDKPIEYIQYLSQPELSVNKMYSCIESLRIALTNHPLSWVNEFVLQDNKNFRKYPIAFL 191
+ YIQ L + L + SC+ESLR++LT+HP+SWV F + +
Sbjct: 64 SSRSAMMYIQEL-RSGLRDMHLLSCLESLRVSLTSHPVSWVQTFGAEGLASLLDILKRLH 122
Query: 192 YPRFPSRSRNDSRYDRVQYECVRCIRAIMNNTVGLKQMFGQKEALTIVARSLDPNKPTVM 251
+ + DSR Q+E +RC++A MNN G+K M +E + ++ R++DP P +M
Sbjct: 123 DEKEETSGNYDSR---NQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAMDPAVPNMM 179
Query: 252 LEAVKVLAAVCLI--PPDGHDKVIKAITMSGELKGKERFQPVVQGLMVKGNNEALRTACL 309
++A K+L+A+C++ P D +++V++A+T E+ ERFQP++ GL G + AL+ CL
Sbjct: 180 IDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLK-SGTSIALKVGCL 238
Query: 310 QLINAIVATPDDLEFRLHLRNEIMRVGLYDLLDALEKDASEDVSVQLKVFIEHKEEDYYE 369
QLINA++ ++L+FR+H+R+E+MR+GL+ +L L + +ED+ VQL VF E +ED+++
Sbjct: 239 QLINALITPAEELDFRVHIRSELMRLGLHQVLQELREIENEDMKVQLCVFDEQGDEDFFD 298
Query: 370 FIQRFDNVRMEIDDVNDCFETVRNMVMDSACEPYLLSILQHLLFIRDDQNMVMDSACEPY 429
R D++RME+DD + F+ + N V DS EP+ LSILQHLL +R+D
Sbjct: 299 LKGRLDDIRMEMDDFGEVFQIILNTVKDSKAEPHFLSILQHLLLVRNDYEA--------- 349
Query: 430 LLSILQHLLFIRDDQYVRLAYYKLLEECVSQIVLHRGGCDPDFRSSRRFQLD 481
R YYKL+EECVSQIVLH+ G DPDF+ R Q+D
Sbjct: 350 -----------------RPQYYKLIEECVSQIVLHKNGTDPDFK-CRHLQID 383
Score = 59.5 bits (143), Expect = 2e-09
Identities = 30/164 (18%), Positives = 64/164 (39%), Gaps = 15/164 (9%)
Query: 8 EEQENMLEKLNPEQLNQKFEDMLNDMNLSDEKKEPLRRQPLANKKKMLLMHYKGTVTSYE 67
+ L+ ++ EQ+ FE ML DMNL++EK++PLR + + K++M+ + +
Sbjct: 1 DPTAQSLQDISDEQVLVLFEQMLVDMNLNEEKQQPLREKDIVIKREMVSQYLHTSKAGMN 60
Query: 68 NKKQENMLEKLNPEQLNQKFEDMLNDMNLSDEKKE---PLRRQPLANKKKMLLMHYKGTV 124
K+ + Q+ L DM+L + L P++ + +G
Sbjct: 61 QKESSR-----SAMMYIQELRSGLRDMHLLSCLESLRVSLTSHPVSWVQTFGA---EGLA 112
Query: 125 TSYENKSKFDKPIEYIQYLSQPELSVNKMYSCIESLRIALTNHP 168
+ + + + + + + I L+ + N
Sbjct: 113 SLLDILKR----LHDEKEETSGNYDSRNQHEIIRCLKAFMNNKF 152
>3obv_E Protein diaphanous homolog 1; autoinhibition, actin, nucleation,
cytoskeleton, structural; HET: SUC; 2.75A {Mus musculus}
PDB: 3o4x_E 2bap_D
Length = 457
Score = 264 bits (675), Expect = 3e-79
Identities = 123/267 (46%), Positives = 174/267 (65%), Gaps = 2/267 (0%)
Query: 591 PEMYTDCHKNIINGKQACEEVKQSKKLAKILELILLMGNYMNSGSRNGGAFGFEINFLTK 650
E + I++ ACEE+++S+ + +LEL LL+GNYMN+GSRN GAFGF I+FL K
Sbjct: 178 SEQVENIKPEIVSVTAACEELRKSENFSSLLELTLLVGNYMNAGSRNAGAFGFNISFLCK 237
Query: 651 LSSTKDIENKTTLLHYLVDTIEQKFPECLKFGDELLHVDRAARVSTDVIQNSIRQMENNI 710
L TK + K TLLH+L + E PE LKF DEL HV++A+RVS + +Q S+ QM+ I
Sbjct: 238 LRDTKSADQKMTLLHFLAELCENDHPEVLKFPDELAHVEKASRVSAENLQKSLDQMKKQI 297
Query: 711 KNLETDIQNCKQAPVANENDKFLEIMEPFAKEVRQKITLLSNMSKNMMTLYGDLAEFYTF 770
++E D+QN A +E DKF+E M F K+ +++ L M NM TLY +L +++ F
Sbjct: 298 ADVERDVQNFPAAT--DEKDKFVEKMTSFVKDAQEQYNKLRMMHSNMETLYKELGDYFVF 355
Query: 771 DKNIYTLEEFFTDIKTFKDSFYQAWQENIKLREAEEKSIRVREAREKAENEKKDKAARKK 830
D ++EEFF D+ F++ F QA +EN K RE EEK R + A+EKAE E+ +K +++
Sbjct: 356 DPKKLSVEEFFMDLHNFRNMFLQAVKENQKRRETEEKMRRAKLAKEKAEKERLEKQQKRE 415
Query: 831 ALIDMTTDQTQQGVMDSLLEALQTGRP 857
LIDM + + GVMDSLLEALQ+G
Sbjct: 416 QLIDMNAEGDETGVMDSLLEALQSGAA 442
>2j1d_G DAAM1, disheveled-associated activator of morphogenesis; actin
assembly, protein binding; 2.55A {Homo sapiens} PDB:
2z6e_A
Length = 483
Score = 245 bits (628), Expect = 2e-72
Identities = 77/323 (23%), Positives = 143/323 (44%), Gaps = 31/323 (9%)
Query: 591 PEMYTDCHKNIINGKQACEEVKQSKKLAKILELILLMGNYMNSGSRNGGAFGFEINFLTK 650
E + + + EEV +S L ++LE++L GNYMN G R G A+GF+I+ L K
Sbjct: 189 AERVAEVKPKVEAIRSGSEEVFRSGALKQLLEVVLAFGNYMNKGQR-GNAYGFKISSLNK 247
Query: 651 LSSTKD-IENKTTLLHYLVDTIEQKFPECLKFGDELLHVDRAARVSTDVIQNSIRQMENN 709
++ TK I+ TLLHYL+ +E K+P L +EL + +AA+V+ + I + +
Sbjct: 248 IADTKSSIDKNITLLHYLITIVENKYPSVLNLNEELRDIPQAAKVNMTELDKEISTLRSG 307
Query: 710 IKNLETDIQNCKQAPVANENDKFLEIMEPFAKEVRQKITLLSNMSKNMMTLYGDLAEFYT 769
+K +ET+++ K P DKF+ ++ F + + ++ L+ + +
Sbjct: 308 LKAVETELEYQKSQP-PQPGDKFVSVVSQFITVASFSFSDVEDLLAEAKDLFTKAVKHFG 366
Query: 770 FDKNIYTLEEFFTDIKTFKDSFYQAWQENIKLREAEEKSIRVREAREKAENEKKDKAARK 829
+ +EFF F + +A QEN +R+ +E+ E R + E + K++ R+
Sbjct: 367 EEAGKIQPDEFFGIFDQFLQAVSEAKQENENMRKKKEE----EERRARMEAQLKEQRERE 422
Query: 830 KALIDMTTDQTQQGVMDSLLEALQTGRPKKTGSSIKSVGCPSHSALQTGSAFTREQRRKR 889
+ + + + G D L+ AL++G + K
Sbjct: 423 RKMRKAKENSEESGEFDDLVSALRSGEVF------------------------DKDLSKL 458
Query: 890 QNDRPMGAERRAQLNRSRSRNGI 912
+ +R + +R R +
Sbjct: 459 KRNRKRITNQMTDSSRERPITKL 481
>1v9d_A Diaphanous protein homolog 1; helix bundle, protein binding; 2.60A
{Mus musculus} SCOP: a.207.1.1
Length = 340
Score = 236 bits (605), Expect = 9e-71
Identities = 105/235 (44%), Positives = 150/235 (63%), Gaps = 2/235 (0%)
Query: 591 PEMYTDCHKNIINGKQACEEVKQSKKLAKILELILLMGNYMNSGSRNGGAFGFEINFLTK 650
E + I++ ACEE+++S+ + +LEL LL+GNYMN+GSRN GAFGF I+FL K
Sbjct: 107 SEQVENIKPEIVSVTAACEELRKSENFSSLLELTLLVGNYMNAGSRNAGAFGFNISFLCK 166
Query: 651 LSSTKDIENKTTLLHYLVDTIEQKFPECLKFGDELLHVDRAARVSTDVIQNSIRQMENNI 710
L TK + K TLLH+L + E PE LKF DEL HV++A+RVS + +Q S+ QM+ I
Sbjct: 167 LRDTKSADQKMTLLHFLAELCENDHPEVLKFPDELAHVEKASRVSAENLQKSLDQMKKQI 226
Query: 711 KNLETDIQNCKQAPVANENDKFLEIMEPFAKEVRQKITLLSNMSKNMMTLYGDLAEFYTF 770
++E D+Q +E DKF+E M F K+ +++ L M NM TLY +L +++ F
Sbjct: 227 ADVERDVQ--NFPAATDEKDKFVEKMTSFVKDAQEQYNKLRMMHSNMETLYKELGDYFVF 284
Query: 771 DKNIYTLEEFFTDIKTFKDSFYQAWQENIKLREAEEKSIRVREAREKAENEKKDK 825
D ++EEFF D+ F++ F QA +EN K RE EEK R + A+EKAE E+ +K
Sbjct: 285 DPKKLSVEEFFMDLHNFRNMFLQAVKENQKRRETEEKMRRAKLAKEKAEKERLEK 339
>2bnx_A Diaphanous protein homolog 1; autoinhibition, actin, nucleation,
cytoskeleton, structural; 2.4A {Mus musculus} SCOP:
a.118.1.23 PDB: 3o4x_A 3obv_A* 2bap_B
Length = 386
Score = 238 bits (607), Expect = 1e-70
Identities = 149/412 (36%), Positives = 241/412 (58%), Gaps = 35/412 (8%)
Query: 136 PIEYIQYLSQPELSVNKMYSCIESLRIALTNHPLSWVNEFVLQDNKNFRKYPIAFLYPRF 195
+ YIQ L + L + SC+ESLR++L N+P+SWV F + + +
Sbjct: 6 AMMYIQEL-RSGLRDMHLLSCLESLRVSLNNNPVSWVQTFGAEGLASLLDILKRLHDEKE 64
Query: 196 PSRSRNDSRYDRVQYECVRCIRAIMNNTVGLKQMFGQKEALTIVARSLDPNKPTVMLEAV 255
+ DSR Q+E +RC++A MNN G+K M +E + ++ R++DP P +M++A
Sbjct: 65 ETSGNYDSR---NQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAA 121
Query: 256 KVLAAVCLI--PPDGHDKVIKAITMSGELKGKERFQPVVQGLMVKGNNEALRTACLQLIN 313
K+L+A+C++ P D +++V++A+T E+ ERFQP++ GL G + AL+ CLQLIN
Sbjct: 122 KLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLK-SGTSIALKVGCLQLIN 180
Query: 314 AIVATPDDLEFRLHLRNEIMRVGLYDLLDALEKDASEDVSVQLKVFIEHKEEDYYEFIQR 373
A++ ++L+FR+H+R+E+MR+GL+ +L L + +ED+ VQL VF E +ED+++ R
Sbjct: 181 ALITPAEELDFRVHIRSELMRLGLHQVLQELREIENEDMKVQLCVFDEQGDEDFFDLKGR 240
Query: 374 FDNVRMEIDDVNDCFETVRNMVMDSACEPYLLSILQHLLFIRDDQNMVMDSACEPYLLSI 433
D++RME+DD + F+ + N V DS EP+ LSILQHLL +R+D
Sbjct: 241 LDDIRMEMDDFGEVFQIILNTVKDSKAEPHFLSILQHLLLVRNDYEARPQ---------- 290
Query: 434 LQHLLFIRDDQYVRLAYYKLLEECVSQIVLHRGGCDPDFRSSRRFQLDVQPLVEHLAEKS 493
YYKL+EECVSQIVLH+ G DPDF+ R Q+D++ LV+ + +K+
Sbjct: 291 ----------------YYKLIEECVSQIVLHKNGTDPDFK-CRHLQIDIERLVDQMIDKT 333
Query: 494 KTEE-DRRVEDLSAKLEEAIMLRQEAEAKLVQAQKTLEDLSSGRPVEKNRLD 544
K E+ + + +L KL+ + R E + ++ + + E EK+ LD
Sbjct: 334 KVEKSEAKATELEKKLDSELTARHELQVEMKKMENDFEQKLQDLQGEKDALD 385
>1ux5_A BNI1 protein; structural protein, FH2 actin cytoskeleton; 2.5A
{Saccharomyces cerevisiae} SCOP: a.207.1.1 PDB: 1y64_B*
1ux4_A
Length = 411
Score = 212 bits (540), Expect = 7e-61
Identities = 54/223 (24%), Positives = 96/223 (43%), Gaps = 5/223 (2%)
Query: 591 PEMYTDCHKNIINGKQACEEVKQSKKLAKILELILLMGNYMNSGSRNGGAFGFEINFLTK 650
Y + + +A +++S L + +IL +GN+MN S+ A GF+++ L +
Sbjct: 190 EREYNELLAKLRKVDKAVSALQESDNLRNVFNVILAVGNFMNDTSKQ--AQGFKLSTLQR 247
Query: 651 LSSTKDIENKTTLLHYLVDTIEQKFPECLKFGDELLHVDRAARVSTDVIQNSIRQMENNI 710
L+ KD N T L+Y+ + +P F EL V +VS + + N + +I
Sbjct: 248 LTFIKDTTNSMTFLNYVEKIVRLNYPSFNDFLSELEPVLDVVKVSIEQLVNDCKDFSQSI 307
Query: 711 KNLETDIQNCKQAPVAN--ENDKFLEIMEPFAKEVRQKITLLSNMSKNMMTLYGDLAEFY 768
N+E ++ + + DK L P E R+K LL + K + + L Y
Sbjct: 308 VNVERSVEIGNLSDSSKFHPLDKVLIKTLPVLPEARKKGDLLEDEVKLTIMEFESLMHTY 367
Query: 769 TFD-KNIYTLEEFFTDIKTFKDSFYQAWQENIKLREAEEKSIR 810
D + + FF F + + +A +N+ E E I+
Sbjct: 368 GEDSGDKFAKISFFKKFADFINEYKKAQAQNLAAEEEERLYIK 410
>2f31_A Diaphanous protein homolog 1; formin,MDIA1, protein-protein
complex, armadillo repeats, structural protein; 2.10A
{Mus musculus}
Length = 233
Score = 183 bits (464), Expect = 1e-52
Identities = 88/237 (37%), Positives = 149/237 (62%), Gaps = 7/237 (2%)
Query: 136 PIEYIQYLSQPELSVNKMYSCIESLRIALTNHPLSWVNEFVLQDNKNFRKYPIAFLYPRF 195
+ YIQ L + L + SC+ESLR++L N+P+SWV F + + +
Sbjct: 2 AMMYIQEL-RSGLRDMHLLSCLESLRVSLNNNPVSWVQTFGAEGLASLLDILKRLHDEKE 60
Query: 196 PSRSRNDSRYDRVQYECVRCIRAIMNNTVGLKQMFGQKEALTIVARSLDPNKPTVMLEAV 255
+ DSR Q+E +RC++A MNN G+K M +E + ++ R++DP P +M++A
Sbjct: 61 ETSGNYDSR---NQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAA 117
Query: 256 KVLAAVCLIP--PDGHDKVIKAITMSGELKGKERFQPVVQGLMVKGNNEALRTACLQLIN 313
K+L+A+C++P D +++V++A+T E+ ERFQP++ GL G + AL+ CLQLIN
Sbjct: 118 KLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLK-SGTSIALKVGCLQLIN 176
Query: 314 AIVATPDDLEFRLHLRNEIMRVGLYDLLDALEKDASEDVSVQLKVFIEHKEEDYYEF 370
A++ ++L+FR+H+R+E+MR+GL+ +L L + +ED+ VQL VF E +ED+++
Sbjct: 177 ALITPAEELDFRVHIRSELMRLGLHQVLQELREIENEDMKVQLCVFDEQGDEDFFDL 233
>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding
domain, ubiquitin-superfold, armadillo repeats,
actin-binding, coiled coil; 2.30A {Homo sapiens}
Length = 339
Score = 101 bits (251), Expect = 3e-23
Identities = 44/287 (15%), Positives = 90/287 (31%), Gaps = 30/287 (10%)
Query: 84 NQKFEDMLNDMNLSDEKKEPLRRQPLANKKKMLLMHYKGTVTSYENKSKFDKPIEYIQYL 143
+ + D + E E + +K L++ + +V K
Sbjct: 78 SGYYLDTELSLEEQREMLEGFYEEISKGRKPTLILRTQLSVRVNAILEKLYSS------- 130
Query: 144 SQPELSVNKMYSCIESLRIALTNHPLSWVNEFVLQDNKNFRKYPIAFLYPRFPSRSRNDS 203
S ++ + SL+ V EFV + ++ L + N
Sbjct: 131 -----SGPELRRSLFSLKQIFQEDK-DLVPEFVHSEG-------LSCLIRVGAAADHN-- 175
Query: 204 RYDRVQYECVRCIRAIMNNTVGLKQMFGQKEALTIVARSLDPNKPTVMLEAVKVLAAVCL 263
Q +R + +M G+ + + + + V+ A+K+L
Sbjct: 176 ----YQSYILRALGQLMLFVDGMLGVVAHSDTIQWLYTLCASLSRLVVKTALKLLLVFVE 231
Query: 264 IPPDGHDKVIKAITMSGELKGKERFQPVVQGLMVKGN-NEALRTACLQLINAIVATPDDL 322
+ I+A+ G + +V L K + L + LIN +A D
Sbjct: 232 YSENNAPLFIRAVNSVASTTGAPPWANLVSILEEKNGADPELLVYTVTLINKTLAALPDQ 291
Query: 323 EFRLHLRNEIMRVGLYDLLDAL--EKDASEDVSVQLKVFIEH-KEED 366
+ + + + + G+ L+ D+ QL ++ K ED
Sbjct: 292 DSFYDVTDALEQQGMEALVQRHLGTAGTDVDLRTQLVLYENALKLED 338
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 84.9 bits (209), Expect = 8e-17
Identities = 91/596 (15%), Positives = 188/596 (31%), Gaps = 176/596 (29%)
Query: 1 MDLQDILEEQENMLEK------------------------LNPEQLNQKF-EDMLND--- 32
D +D+ + +++L K E++ QKF E++L
Sbjct: 33 FDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYK 92
Query: 33 --MN-LSDEKKEPLR--------RQPLANKKKMLLMHYKGTVTSYENKKQ-ENMLEKLNP 80
M+ + E+++P R L N ++ K V+ + + L +L P
Sbjct: 93 FLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFA---KYNVSRLQPYLKLRQALLELRP 149
Query: 81 EQ--------------------LNQKFEDMLND----MNLSDEKKEPLRRQPLANKKKML 116
+ L+ K + ++ +NL + + L
Sbjct: 150 AKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQK----- 204
Query: 117 LMHYKGTVTSYENKSKFDKPIEYIQYLSQPELSVNKMYSCIESLRIALTNHPLSWVNE-- 174
L++ + D + S+ + S N I S++ L S E
Sbjct: 205 LLY------------QIDPN-----WTSRSDHSSNIKLR-IHSIQAELRRLLKSKPYENC 246
Query: 175 -FVLQD--NKNFRKYPIAFLYPRFPSR----SRNDSRYDRVQYECVRCIRAIMNNTVGLK 227
VL + N AF + +R D + ++ ++++
Sbjct: 247 LLVLLNVQNAKAWN---AFN---LSCKILLTTRFKQVTDFLSAA-TTTHISLDHHSMT-- 297
Query: 228 QMFGQKEALTIVARSLD--PNK-PTVMLE----AVKVLAAVCLIPPD--------GHDKV 272
E +++ + LD P P +L + ++A DK+
Sbjct: 298 --LTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKL 355
Query: 273 IKAITMSGE-LKGKERFQPVVQGLMVKGNNEALRTACLQLI--NAIVATPDDLEFRLHLR 329
I S L+ E ++ + L V + + T L LI + I + + +LH
Sbjct: 356 TTIIESSLNVLEPAE-YRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKY 414
Query: 330 ------NEIMRVGLYDLLDALEKDASEDVSVQLKVFIEH---------------KEEDY- 367
+ + + + L+ + ++ + ++H + Y
Sbjct: 415 SLVEKQPKESTISIPSIYLELKVKLENEYALH-RSIVDHYNIPKTFDSDDLIPPYLDQYF 473
Query: 368 YEFI----------QRFDNVRMEIDDVNDCF--ETVRNMVMDSACEPYLLSILQHLL--- 412
Y I +R RM D F + +R+ +L+ LQ L
Sbjct: 474 YSHIGHHLKNIEHPERMTLFRMVFLDFR--FLEQKIRHDSTAWNASGSILNTLQQLKFYK 531
Query: 413 -FIRDDQNMV--MDSACEPYLLSILQHLLFIRDDQYVRLA----YYKLLEECVSQI 461
+I D+ + +A +L I ++L+ + +R+A + EE Q+
Sbjct: 532 PYICDNDPKYERLVNAILDFLPKIEENLICSKYTDLLRIALMAEDEAIFEEAHKQV 587
Score = 73.0 bits (178), Expect = 3e-13
Identities = 76/509 (14%), Positives = 154/509 (30%), Gaps = 138/509 (27%)
Query: 119 HYKGTVTSYENKSKFDKPIEYIQYLSQPELS-------------VNKMYSCIESLRIALT 165
YK ++ +E+ + + +Q + + LS V+ +L
Sbjct: 17 QYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLL---- 72
Query: 166 NHPLSWVNEFV---LQDNKNFRKYPIAFLYPRFPSRSRNDSRYDRVQYECVRCIRAIMNN 222
+ V +FV L+ N Y FL + R S Y R +
Sbjct: 73 SKQEEMVQKFVEEVLRIN-----YK--FLMSPIKTEQRQPSM-MTRMYIEQR------DR 118
Query: 223 TVGLKQMFG--------QKEALTIVARSLDPNKPTV---MLEAVK-VLAA-VCLIPPDGH 269
Q+F L L P K + +L + K +A VCL
Sbjct: 119 LYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCL------ 172
Query: 270 DKVIKAITMSGE---LKGKERFQPVVQGLMVKGNNEALRTACLQLINAIVATPD---DLE 323
++ M + L K P + ++ E L+ Q+ + D +++
Sbjct: 173 SYKVQ-CKMDFKIFWLNLKNCNSP--ETVL-----EMLQKLLYQIDPNWTSRSDHSSNIK 224
Query: 324 FRLH-LRNEIMRV--------GLYDLLDALEKDASEDVSVQLKVFIEHKEEDYYEFIQRF 374
R+H ++ E+ R+ L LL+ A ++ K+ + + + +F+
Sbjct: 225 LRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAA 284
Query: 375 DNVRMEIDDVNDCFETVRNMVMDSACEPYLLSILQHLLFIRDDQNMVMDSACE--PYLLS 432
+ +D + + S+L L ++ + P LS
Sbjct: 285 TTTHISLDHHSMTLT-----------PDEVKSLL--LKYLDCRPQDLPREVLTTNPRRLS 331
Query: 433 ILQHLL---FIRDDQYVRLAYYKL---LEECVSQIVLHRGGCDP-DFRSSRRFQL----- 480
I+ + D + + KL +E ++ + +P ++R + F
Sbjct: 332 IIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVL-------EPAEYR--KMFDRLSVFP 382
Query: 481 --------------------DVQPLVEHLAEKSKTEEDR-----RVEDLSAKLEEAIMLR 515
DV +V L + S E+ + + +L+ +
Sbjct: 383 PSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENE 442
Query: 516 QEAEAKLVQAQKTLEDLSSGRPVEKNRLD 544
+V + S + LD
Sbjct: 443 YALHRSIVDHYNIPKTFDSDDLI-PPYLD 470
Score = 68.7 bits (167), Expect = 7e-12
Identities = 48/324 (14%), Positives = 95/324 (29%), Gaps = 98/324 (30%)
Query: 9 EQENMLEKLNPEQLNQKFEDMLNDMNLSDEKKEPLRRQPL------ANKKKMLLM--HYK 60
++ L P+++ L+ D +E L P + + L ++K
Sbjct: 290 SLDHHSMTLTPDEVKSLLLKYLD-CRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWK 348
Query: 61 GTVTSYENKKQENM----LEKLNPEQLNQKFEDML---NDMNLS----------DEKKEP 103
K + L L P + + F+ + ++ K +
Sbjct: 349 ----HVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDV 404
Query: 104 ------LRRQPLANKKK--------MLLMHYKGT-----------VTSYENKSKFD---- 134
L + L K+ + + K V Y FD
Sbjct: 405 MVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDL 464
Query: 135 -KPIE------YIQY-LSQPELS-----VNKMY---SCIES-LRIALT--NHPLSWVNEF 175
P +I + L E ++ +E +R T N S +N
Sbjct: 465 IPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILN-- 522
Query: 176 VLQDNKNFRKYPIAFLYPRFPSRSRNDSRYDRVQYECVRCIRAIMNNTVGLKQMFGQKEA 235
LQ K ++ Y I ND +Y+R+ + AI++ +++ +
Sbjct: 523 TLQQLKFYKPY-I----------CDNDPKYERL-------VNAILDFLPKIEENLICSKY 564
Query: 236 LTIVARSLDPNKPTVMLEAVKVLA 259
++ +L + EA K +
Sbjct: 565 TDLLRIALMAEDEAIFEEAHKQVQ 588
Score = 46.4 bits (109), Expect = 5e-05
Identities = 36/280 (12%), Positives = 87/280 (31%), Gaps = 57/280 (20%)
Query: 646 NFLTKLSSTKDIE------NKTTLLHYLVDTIEQKFPECLK-FGDELLHVDRAARVSTDV 698
+ + S ++I+ + + L T+ K E ++ F +E+L ++
Sbjct: 40 DMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRIN------YKF 93
Query: 699 IQNSIRQMENNIKNLETDIQNCKQAPVANENDKFLEIMEPFAKEVRQKITLLSNMSKNM- 757
+ + I+ E ++ T + ++ + N+N F + + + L +
Sbjct: 94 LMSPIKT-EQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKN 152
Query: 758 MTLYG---------------DLAEFYTFDKNIY--TLEEFFTD---IKTFKDSFYQAWQE 797
+ + G D I+ L+ + ++ + YQ
Sbjct: 153 VLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPN 212
Query: 798 NIKLREAEEKSIRVREAREKAENEKKDKAARK---KALIDMTTDQTQQGVMDS-LLEA-- 851
+ S ++ + E + K L+ + V ++ A
Sbjct: 213 ---WTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVL--L----NVQNAKAWNAFN 263
Query: 852 -----LQTGRPKKTGSSIKSVGCPSHSAL-QTGSAFTREQ 885
L T R K+ + S +H +L T ++
Sbjct: 264 LSCKILLTTRFKQVTDFL-SAATTTHISLDHHSMTLTPDE 302
Score = 45.6 bits (107), Expect = 9e-05
Identities = 76/520 (14%), Positives = 144/520 (27%), Gaps = 177/520 (34%)
Query: 471 DFRSSRRFQLDVQPLVEHLAEKSKTEED-RRVEDL------SAKLEEAIMLRQEAEAKLV 523
DF + Q + ++ + D + V+D+ +++ IM +
Sbjct: 8 DFETGEH-QYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVS---- 62
Query: 524 QAQKTLEDL-SSGRPVEKNRLDEVKAQ----VAAGIPTGPKGGPPPPPPPPGGMGPPPPP 578
+ L S + + ++EV + + I T +
Sbjct: 63 GTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQ------------------ 104
Query: 579 MPGMPGPPPPPMPEMYTDCHKNIINGKQACEE--VKQSKKLAKI----LEL-----ILLM 627
P M MY + + N Q + V + + K+ LEL +L+
Sbjct: 105 --------PSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLID 156
Query: 628 GNYMNSGS----------RNGG---AFGFEINFLT--KLSSTKDIENKTTLLHYLVDTIE 672
G + GS + F+I +L +S + + L Y +D
Sbjct: 157 G--V-LGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQID--- 210
Query: 673 QKFPECLKFGDELLHVDRAARVSTDVIQNSIR------QMEN------NIKNLET----D 716
++ IQ +R EN N++N + +
Sbjct: 211 -------PNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFN 263
Query: 717 IQNCK------QAPVAN-------------ENDKFL---EIMEPFAKEVRQKITLLSN-M 753
+ CK V + + L E+ K + + L +
Sbjct: 264 LS-CKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREV 322
Query: 754 SKNMMTLYGDLAEFYTFDKNIYTLEEFFTDIKTFKDSFYQAWQENIKLREAEEKSIRVRE 813
+AE + + +K KL E S+
Sbjct: 323 LTTNPRRLSIIAES---------IRDGLATWDNWKHVNCD------KLTTIIESSL---N 364
Query: 814 AREKAENEK--KDKAA-RKKALI----------DMTTDQTQQGVMD-----SLLEALQTG 855
E AE K + A I D+ V++ SL+E
Sbjct: 365 VLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMV-VVNKLHKYSLVE----K 419
Query: 856 RPKKTGSSIKSVGCPSHSALQTGSAFTREQRRKRQNDRPM 895
+PK++ SI S + E + K +N+ +
Sbjct: 420 QPKESTISI-------PS-IY------LELKVKLENEYAL 445
>3pgw_B SM B; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici
SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens}
PDB: 3cw1_A
Length = 231
Score = 55.0 bits (132), Expect = 2e-08
Identities = 20/42 (47%), Positives = 20/42 (47%), Gaps = 2/42 (4%)
Query: 552 AGIPTGPKGGPP--PPPPPPGGMGPPPPPMPGMPGPPPPPMP 591
A I P PP PPPP G G PPP M G P PPM
Sbjct: 159 ASIAGAPTQYPPGRGGPPPPMGRGAPPPGMMGPPPGMRPPMG 200
Score = 55.0 bits (132), Expect = 2e-08
Identities = 15/47 (31%), Positives = 15/47 (31%)
Query: 548 AQVAAGIPTGPKGGPPPPPPPPGGMGPPPPPMPGMPGPPPPPMPEMY 594
AA P PPG GPPPP G P P P
Sbjct: 149 TVAAAAAAATASIAGAPTQYPPGRGGPPPPMGRGAPPPGMMGPPPGM 195
Score = 55.0 bits (132), Expect = 2e-08
Identities = 10/37 (27%), Positives = 11/37 (29%)
Query: 555 PTGPKGGPPPPPPPPGGMGPPPPPMPGMPGPPPPPMP 591
P G + P P G PPPPM
Sbjct: 144 PQGRGTVAAAAAAATASIAGAPTQYPPGRGGPPPPMG 180
Score = 53.9 bits (129), Expect = 4e-08
Identities = 15/44 (34%), Positives = 16/44 (36%)
Query: 548 AQVAAGIPTGPKGGPPPPPPPPGGMGPPPPPMPGMPGPPPPPMP 591
A +A P G PPPP G PP P PP P
Sbjct: 159 ASIAGAPTQYPPGRGGPPPPMGRGAPPPGMMGPPPGMRPPMGPP 202
Score = 53.9 bits (129), Expect = 5e-08
Identities = 16/37 (43%), Positives = 16/37 (43%)
Query: 553 GIPTGPKGGPPPPPPPPGGMGPPPPPMPGMPGPPPPP 589
G P GPPP PP G PP G P PPP
Sbjct: 182 GAPPPGMMGPPPGMRPPMGPPMGIPPGRGTPMGMPPP 218
Score = 52.3 bits (125), Expect = 1e-07
Identities = 17/50 (34%), Positives = 18/50 (36%), Gaps = 5/50 (10%)
Query: 547 KAQVAAGIPTGPKGGPPPPPPPPGGMGPPPPPM-----PGMPGPPPPPMP 591
+ VAA P P G G PPPPM P PPP M
Sbjct: 147 RGTVAAAAAAATASIAGAPTQYPPGRGGPPPPMGRGAPPPGMMGPPPGMR 196
Score = 52.0 bits (124), Expect = 2e-07
Identities = 15/41 (36%), Positives = 16/41 (39%)
Query: 551 AAGIPTGPKGGPPPPPPPPGGMGPPPPPMPGMPGPPPPPMP 591
A +GGPPPP P PGM P PPM
Sbjct: 164 APTQYPPGRGGPPPPMGRGAPPPGMMGPPPGMRPPMGPPMG 204
Score = 52.0 bits (124), Expect = 2e-07
Identities = 9/37 (24%), Positives = 9/37 (24%)
Query: 555 PTGPKGGPPPPPPPPGGMGPPPPPMPGMPGPPPPPMP 591
G P PG GPPPP
Sbjct: 145 QGRGTVAAAAAAATASIAGAPTQYPPGRGGPPPPMGR 181
Score = 51.6 bits (123), Expect = 3e-07
Identities = 8/41 (19%), Positives = 10/41 (24%)
Query: 551 AAGIPTGPKGGPPPPPPPPGGMGPPPPPMPGMPGPPPPPMP 591
+ + T G P PG PP P
Sbjct: 138 SQQVMTPQGRGTVAAAAAAATASIAGAPTQYPPGRGGPPPP 178
Score = 50.8 bits (121), Expect = 5e-07
Identities = 18/43 (41%), Positives = 18/43 (41%), Gaps = 2/43 (4%)
Query: 553 GIPTGPKGGPPPPPP--PPGGMGPPPPPMPGMPGPPPPPMPEM 593
P G G PPP PP GM PPP M GPP P
Sbjct: 167 QYPPGRGGPPPPMGRGAPPPGMMGPPPGMRPPMGPPMGIPPGR 209
Score = 50.4 bits (120), Expect = 6e-07
Identities = 7/41 (17%), Positives = 9/41 (21%)
Query: 553 GIPTGPKGGPPPPPPPPGGMGPPPPPMPGMPGPPPPPMPEM 593
G P+ P + G P PP
Sbjct: 135 GGPSQQVMTPQGRGTVAAAAAAATASIAGAPTQYPPGRGGP 175
Score = 50.4 bits (120), Expect = 7e-07
Identities = 6/37 (16%), Positives = 6/37 (16%)
Query: 555 PTGPKGGPPPPPPPPGGMGPPPPPMPGMPGPPPPPMP 591
G P P PPP
Sbjct: 146 GRGTVAAAAAAATASIAGAPTQYPPGRGGPPPPMGRG 182
Score = 50.0 bits (119), Expect = 8e-07
Identities = 9/44 (20%), Positives = 10/44 (22%), Gaps = 1/44 (2%)
Query: 549 QVAAGIPTGPKGGPPPPPPPPGGMGP-PPPPMPGMPGPPPPPMP 591
Q + P P P P M PPP
Sbjct: 145 QGRGTVAAAAAAATASIAGAPTQYPPGRGGPPPPMGRGAPPPGM 188
Score = 48.1 bits (114), Expect = 3e-06
Identities = 21/124 (16%), Positives = 32/124 (25%), Gaps = 25/124 (20%)
Query: 495 TEEDRRVEDLSAKLEEA--------IMLRQEAEAKLVQAQKTLEDLSSGRPVEKNRLDEV 546
+E R+++ ++K E ++LR E + +D R
Sbjct: 45 CDEFRKIKPKNSKQAEREEKRVLGLVLLRGENLVSMTVEGPPPKDTGIARVPLAGAAGGP 104
Query: 547 KAQVAAG--IPTGPK---------------GGPPPPPPPPGGMGPPPPPMPGMPGPPPPP 589
AAG IP G GGP P G G
Sbjct: 105 GIGRAAGRGIPAGVPMPQAPAGLAGPVRGVGGPSQQVMTPQGRGTVAAAAAAATASIAGA 164
Query: 590 MPEM 593
+
Sbjct: 165 PTQY 168
Score = 48.1 bits (114), Expect = 4e-06
Identities = 6/37 (16%), Positives = 7/37 (18%)
Query: 555 PTGPKGGPPPPPPPPGGMGPPPPPMPGMPGPPPPPMP 591
GP P + G P P
Sbjct: 134 VGGPSQQVMTPQGRGTVAAAAAAATASIAGAPTQYPP 170
Score = 47.3 bits (112), Expect = 8e-06
Identities = 13/40 (32%), Positives = 13/40 (32%)
Query: 555 PTGPKGGPPPPPPPPGGMGPPPPPMPGMPGPPPPPMPEMY 594
P G PPP G PP P M PP P
Sbjct: 176 PPPMGRGAPPPGMMGPPPGMRPPMGPPMGIPPGRGTPMGM 215
Score = 46.9 bits (111), Expect = 8e-06
Identities = 17/49 (34%), Positives = 19/49 (38%), Gaps = 3/49 (6%)
Query: 548 AQVAAGIPTGPKGGPPPPPPP---PGGMGPPPPPMPGMPGPPPPPMPEM 593
G+ P G PP PP P G G P P PPPP M +
Sbjct: 182 GAPPPGMMGPPPGMRPPMGPPMGIPPGRGTPMGMPPPGMRPPPPGMRGL 230
>1ei8_A Collagen-like peptide (Pro-HYP-Gly)4-PG-(Pro-HYP- Gly)5; triple
helix, contractIle protein; 2.00A {Synthetic} SCOP:
k.3.1.1
Length = 29
Score = 47.6 bits (113), Expect = 1e-07
Identities = 19/28 (67%), Positives = 19/28 (67%)
Query: 562 PPPPPPPPGGMGPPPPPMPGMPGPPPPP 589
PP PP PPG GP PP PG PGPP PP
Sbjct: 1 PPGPPGPPGPPGPGPPGPPGPPGPPGPP 28
Score = 44.5 bits (105), Expect = 2e-06
Identities = 18/27 (66%), Positives = 18/27 (66%)
Query: 565 PPPPPGGMGPPPPPMPGMPGPPPPPMP 591
PP PPG GPP P PG PGPP PP P
Sbjct: 1 PPGPPGPPGPPGPGPPGPPGPPGPPGP 27
Score = 37.9 bits (88), Expect = 3e-04
Identities = 17/27 (62%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
Query: 555 PTGPKGGPPPPPP-PPGGMGPPPPPMP 580
P GP G P PP P PPG GPP PP P
Sbjct: 1 PPGPPGPPGPPGPGPPGPPGPPGPPGP 27
Score = 36.0 bits (83), Expect = 0.001
Identities = 16/25 (64%), Positives = 16/25 (64%), Gaps = 1/25 (4%)
Query: 555 PTGPKGGPPPPPP-PPGGMGPPPPP 578
P GP G P P PP PPG GPP PP
Sbjct: 4 PPGPPGPPGPGPPGPPGPPGPPGPP 28
>1cag_A Collagen-like peptide; 1.85A {} SCOP: k.3.1.1 PDB: 1cgd_A
Length = 30
Score = 46.4 bits (110), Expect = 3e-07
Identities = 20/30 (66%), Positives = 20/30 (66%), Gaps = 2/30 (6%)
Query: 562 PPPPPPPPGGMGPPPPPMPGMPGPPPPPMP 591
PP PP PPG GPP PP P PGPP PP P
Sbjct: 1 PPGPPGPPGPPGPPAPPGP--PGPPGPPGP 28
Score = 44.5 bits (105), Expect = 2e-06
Identities = 19/29 (65%), Positives = 19/29 (65%), Gaps = 2/29 (6%)
Query: 561 GPPPPPPPPGGMGPPPPPMPGMPGPPPPP 589
GPP PP PPG PP PP P PGPP PP
Sbjct: 3 GPPGPPGPPGPPAPPGPPGP--PGPPGPP 29
Score = 39.1 bits (91), Expect = 1e-04
Identities = 19/32 (59%), Positives = 19/32 (59%), Gaps = 6/32 (18%)
Query: 555 PTGPKGGPPPPPPPPGGMGPPPPPMPGMPGPP 586
P GP G P PP PP GPP PP P PGPP
Sbjct: 4 PPGPPGPPGPPAPP----GPPGPPGP--PGPP 29
>1y0f_B Collagen I alpha 2; native, in SITU, triple-helix, supermolecular,
packing structure; 5.16A {Rattus norvegicus} SCOP:
i.25.1.1 PDB: 1ygv_B 3hqv_B 3hr2_B
Length = 1026
Score = 53.6 bits (129), Expect = 3e-07
Identities = 13/38 (34%), Positives = 15/38 (39%), Gaps = 3/38 (7%)
Query: 555 PTGPKG--GPPPPPPPPGGMGPP-PPPMPGMPGPPPPP 589
G +G G G GP PP G+PGP P
Sbjct: 446 NNGAQGPPGLQGVQGEKGEQGPAGPPGFQGLPGPAGPA 483
Score = 52.8 bits (127), Expect = 5e-07
Identities = 15/40 (37%), Positives = 15/40 (37%), Gaps = 3/40 (7%)
Query: 555 PTGPKG--GPPPPPPPPGGMGPPPPP-MPGMPGPPPPPMP 591
P G G GPP G G P PG G P P P
Sbjct: 443 PDGNNGAQGPPGLQGVQGEKGEQGPAGPPGFQGLPGPAGP 482
Score = 52.0 bits (125), Expect = 9e-07
Identities = 18/38 (47%), Positives = 18/38 (47%), Gaps = 3/38 (7%)
Query: 555 PTGPKG--GPPPPPPPPGGMGPPPPP-MPGMPGPPPPP 589
PTGP G GP PP P G G G PGP PP
Sbjct: 521 PTGPIGSRGPSGPPGPDGNKGEAGAVGPAGAPGPAGPP 558
Score = 51.6 bits (124), Expect = 1e-06
Identities = 15/38 (39%), Positives = 16/38 (42%), Gaps = 3/38 (7%)
Query: 555 PTGPKG--GPPPPPPPPGGMGPPPPP-MPGMPGPPPPP 589
P GP G G G GPP PP + G PG P
Sbjct: 290 PPGPSGEEGKRGSTGEIGPAGPPGPPGLRGNPGSRGLP 327
Score = 51.6 bits (124), Expect = 1e-06
Identities = 14/38 (36%), Positives = 15/38 (39%), Gaps = 3/38 (7%)
Query: 555 PTGPKG--GPPPPPPPPGGMGPPPPP-MPGMPGPPPPP 589
G G GP PP PPG G P +PG G
Sbjct: 299 KRGSTGEIGPAGPPGPPGLRGNPGSRGLPGADGVAGVM 336
Score = 51.6 bits (124), Expect = 1e-06
Identities = 17/38 (44%), Positives = 19/38 (50%), Gaps = 3/38 (7%)
Query: 555 PTGPKG--GPPPPPPPPGGMGPPPPP-MPGMPGPPPPP 589
GPKG GP P P G GP +PG+ GP PP
Sbjct: 179 APGPKGELGPVGNPGPAGPAGPRGEVGLPGLSGPVGPP 216
Score = 51.3 bits (123), Expect = 2e-06
Identities = 13/40 (32%), Positives = 14/40 (35%), Gaps = 3/40 (7%)
Query: 555 PTGPKG--GPPPPPPPPGGMGPP-PPPMPGMPGPPPPPMP 591
P G +G GPP G GP G PGP
Sbjct: 503 PAGARGERGPPGERGAAGPTGPIGSRGPSGPPGPDGNKGE 542
Score = 51.3 bits (123), Expect = 2e-06
Identities = 18/40 (45%), Positives = 18/40 (45%), Gaps = 3/40 (7%)
Query: 555 PTGPKG--GPPPPPPPPGGMGPP-PPPMPGMPGPPPPPMP 591
TGP G GPP PP G G P P PG G P P
Sbjct: 44 QTGPAGARGPPGPPGKAGEDGHPGKPGRPGERGVPGPQGA 83
Score = 50.9 bits (122), Expect = 2e-06
Identities = 16/38 (42%), Positives = 17/38 (44%), Gaps = 3/38 (7%)
Query: 555 PTGPKG--GPPPPPPPPGGMGPP-PPPMPGMPGPPPPP 589
P G +G GPP P G G P PG GPP P
Sbjct: 524 PIGSRGPSGPPGPDGNKGEAGAVGPAGAPGPAGPPGIP 561
Score = 50.9 bits (122), Expect = 2e-06
Identities = 14/40 (35%), Positives = 14/40 (35%), Gaps = 3/40 (7%)
Query: 555 PTGPKG--GPPPPPPPPGGMGPP-PPPMPGMPGPPPPPMP 591
P GP G GPP PP G G P G G
Sbjct: 716 PPGPSGLTGPPGPPGAAGKEGIRGPRGDQGPVGRSGETGA 755
Score = 50.9 bits (122), Expect = 2e-06
Identities = 15/38 (39%), Positives = 16/38 (42%), Gaps = 3/38 (7%)
Query: 555 PTGPKG--GPPPPPPPPGGMGPPPPP-MPGMPGPPPPP 589
P GP G G P P P G G P + G G P P
Sbjct: 467 PAGPPGFQGLPGPAGPAGEAGKPGERGLHGEFGLPGPA 504
Score = 50.9 bits (122), Expect = 2e-06
Identities = 12/40 (30%), Positives = 13/40 (32%), Gaps = 3/40 (7%)
Query: 555 PTGPKG--GPPPPPPPPGGMGPP-PPPMPGMPGPPPPPMP 591
P G +G G P G G P G GP P
Sbjct: 314 PPGLRGNPGSRGLPGADGVAGVMGPAGSRGTSGPAGVRGP 353
Score = 50.9 bits (122), Expect = 2e-06
Identities = 13/40 (32%), Positives = 14/40 (35%), Gaps = 3/40 (7%)
Query: 555 PTGPKG--GPPPPPPPPGGMGPP-PPPMPGMPGPPPPPMP 591
G G G P P G GPP + G G P P
Sbjct: 431 NVGLAGARGAPGPDGNNGAQGPPGLQGVQGEKGEQGPAGP 470
Score = 50.9 bits (122), Expect = 2e-06
Identities = 12/38 (31%), Positives = 12/38 (31%), Gaps = 3/38 (7%)
Query: 555 PTGPKG--GPPPPPPPPGGMGPPPPP-MPGMPGPPPPP 589
P GP G G P PG G G G P
Sbjct: 311 PPGPPGLRGNPGSRGLPGADGVAGVMGPAGSRGTSGPA 348
Score = 50.9 bits (122), Expect = 2e-06
Identities = 16/40 (40%), Positives = 16/40 (40%), Gaps = 3/40 (7%)
Query: 555 PTGPKG--GPPPPPPPPGGMGPPPPP-MPGMPGPPPPPMP 591
GP G GP P P G GPP P G GP P
Sbjct: 662 TKGPVGEQGPVGPQGPVGAAGPPGPVGAAGPAGPRGDAGP 701
Score = 50.9 bits (122), Expect = 2e-06
Identities = 17/43 (39%), Positives = 17/43 (39%), Gaps = 6/43 (13%)
Query: 555 PTGPKG--GPPPPPPPPGGMGPP----PPPMPGMPGPPPPPMP 591
P GP G GPP P G GP P M G PG P
Sbjct: 674 PQGPVGAAGPPGPVGAAGPAGPRGDAGPTGMTGFPGAAGRTGP 716
Score = 50.9 bits (122), Expect = 2e-06
Identities = 15/38 (39%), Positives = 16/38 (42%), Gaps = 3/38 (7%)
Query: 555 PTGPKG--GPPPPPPPPGGMGPPPPP-MPGMPGPPPPP 589
P GP G G P G GP PP +PG G P
Sbjct: 533 PPGPDGNKGEAGAVGPAGAPGPAGPPGIPGERGVAGVP 570
Score = 50.5 bits (121), Expect = 2e-06
Identities = 14/38 (36%), Positives = 14/38 (36%), Gaps = 3/38 (7%)
Query: 555 PTGPKG--GPPPPPPPPGGMGPP-PPPMPGMPGPPPPP 589
GP G G P P G GP PG G PP
Sbjct: 680 AAGPPGPVGAAGPAGPRGDAGPTGMTGFPGAAGRTGPP 717
Score = 50.5 bits (121), Expect = 3e-06
Identities = 17/38 (44%), Positives = 19/38 (50%), Gaps = 3/38 (7%)
Query: 555 PTGPKG--GPPPPPPPPGGMGPP-PPPMPGMPGPPPPP 589
P GP+G GP PG G PP G+ GPP PP
Sbjct: 692 PAGPRGDAGPTGMTGFPGAAGRTGPPGPSGLTGPPGPP 729
Score = 50.1 bits (120), Expect = 3e-06
Identities = 12/40 (30%), Positives = 15/40 (37%), Gaps = 3/40 (7%)
Query: 555 PTGPKG--GPPPPPPPPGGMGPP-PPPMPGMPGPPPPPMP 591
G +G GP P G +GP P G+ G P
Sbjct: 890 KLGNRGEPGPAGAVGPAGAVGPRGPSGPQGIRGDDGEPGD 929
Score = 50.1 bits (120), Expect = 3e-06
Identities = 15/41 (36%), Positives = 16/41 (39%), Gaps = 6/41 (14%)
Query: 555 PTGPKG-----GPPPPPPPPGGMGPPPPP-MPGMPGPPPPP 589
GP G G P P G +G PP PG PGP
Sbjct: 146 APGPAGARGSDGSVGPVGPAGPIGSAGPPGFPGAPGPKGEL 186
Score = 50.1 bits (120), Expect = 3e-06
Identities = 12/38 (31%), Positives = 12/38 (31%), Gaps = 3/38 (7%)
Query: 555 PTGPKG--GPPPPPPPPGGMGPPPPP-MPGMPGPPPPP 589
G G G P G GP PG PG P
Sbjct: 332 VAGVMGPAGSRGTSGPAGVRGPNGDSGRPGEPGLMGPR 369
Score = 50.1 bits (120), Expect = 3e-06
Identities = 13/38 (34%), Positives = 14/38 (36%), Gaps = 3/38 (7%)
Query: 555 PTGPKG--GPPPPPPPPGGMGPPPPP-MPGMPGPPPPP 589
G +G G P PPG G P P G G P
Sbjct: 455 LQGVQGEKGEQGPAGPPGFQGLPGPAGPAGEAGKPGER 492
Score = 50.1 bits (120), Expect = 4e-06
Identities = 14/38 (36%), Positives = 15/38 (39%), Gaps = 3/38 (7%)
Query: 555 PTGPKG--GPPPPPPPPGGMGPPPPP-MPGMPGPPPPP 589
G KG G P P G +G PP G GP P
Sbjct: 659 ERGTKGPVGEQGPVGPQGPVGAAGPPGPVGAAGPAGPR 696
Score = 49.7 bits (119), Expect = 4e-06
Identities = 17/38 (44%), Positives = 17/38 (44%), Gaps = 3/38 (7%)
Query: 555 PTGPKG--GPPPPPPPPGGMGPP-PPPMPGMPGPPPPP 589
P GP G GPP P PG G P PG GP P
Sbjct: 164 PAGPIGSAGPPGFPGAPGPKGELGPVGNPGPAGPAGPR 201
Score = 49.7 bits (119), Expect = 4e-06
Identities = 13/40 (32%), Positives = 14/40 (35%), Gaps = 3/40 (7%)
Query: 555 PTGPKG--GPPPPPPPPGGMGPP-PPPMPGMPGPPPPPMP 591
P GP+G G P P G G P P G G
Sbjct: 401 PAGPRGEAGAIGFPGPKGPTGEPGKPGEKGNVGLAGARGA 440
Score = 49.7 bits (119), Expect = 4e-06
Identities = 13/38 (34%), Positives = 13/38 (34%), Gaps = 3/38 (7%)
Query: 555 PTGPKG--GPPPPPPPPGGMGPP-PPPMPGMPGPPPPP 589
GP G G P PPG G G G P P
Sbjct: 518 AAGPTGPIGSRGPSGPPGPDGNKGEAGAVGPAGAPGPA 555
Score = 49.7 bits (119), Expect = 4e-06
Identities = 14/41 (34%), Positives = 16/41 (39%), Gaps = 6/41 (14%)
Query: 555 PTGPKG--GPPPPPPPPGGMGPP----PPPMPGMPGPPPPP 589
P G KG G P PG GPP + G+PG
Sbjct: 536 PDGNKGEAGAVGPAGAPGPAGPPGIPGERGVAGVPGGKGEK 576
Score = 49.7 bits (119), Expect = 4e-06
Identities = 12/40 (30%), Positives = 14/40 (35%), Gaps = 3/40 (7%)
Query: 555 PTGPKG--GPPPPPPPPGGMGPPPPP-MPGMPGPPPPPMP 591
P G +G G P P G G + G PG P
Sbjct: 80 PQGARGFPGTPGLPGFKGIRGHNGLDGLTGQPGAPGVKGE 119
Score = 49.7 bits (119), Expect = 4e-06
Identities = 13/38 (34%), Positives = 14/38 (36%), Gaps = 3/38 (7%)
Query: 555 PTGPKG--GPPPPPPPPGGMGPP-PPPMPGMPGPPPPP 589
GP G GP PPG +G P G GP
Sbjct: 668 EQGPVGPQGPVGAAGPPGPVGAAGPAGPRGDAGPTGMT 705
Score = 49.7 bits (119), Expect = 4e-06
Identities = 13/40 (32%), Positives = 13/40 (32%), Gaps = 3/40 (7%)
Query: 555 PTGPKG--GPPPPPPPPGGMGPP-PPPMPGMPGPPPPPMP 591
G KG G P G GP G GP P P
Sbjct: 128 TPGQKGARGLPGERGRVGAPGPAGARGSDGSVGPVGPAGP 167
Score = 49.7 bits (119), Expect = 4e-06
Identities = 15/42 (35%), Positives = 17/42 (40%), Gaps = 4/42 (9%)
Query: 551 AAGIPTGPKG--GPPPPPPPPGGMGPPPPP-MPGMPGPPPPP 589
AG+P G KG G P G G +PG G P P
Sbjct: 566 VAGVP-GGKGEKGAPGLRGDTGATGRDGARGLPGAIGAPGPA 606
Score = 49.7 bits (119), Expect = 4e-06
Identities = 16/40 (40%), Positives = 17/40 (42%), Gaps = 3/40 (7%)
Query: 555 PTGPKG--GPPPPPPPPGGMGPP-PPPMPGMPGPPPPPMP 591
G KG G P PPG +GP P PG G P P
Sbjct: 860 QPGHKGERGTPGNAGPPGAVGPVGPVGEPGKLGNRGEPGP 899
Score = 49.7 bits (119), Expect = 4e-06
Identities = 11/38 (28%), Positives = 11/38 (28%), Gaps = 3/38 (7%)
Query: 555 PTGPKG--GPPPPPPPPGGMGPPPPP-MPGMPGPPPPP 589
G G G PPG G G GPP
Sbjct: 437 ARGAPGPDGNNGAQGPPGLQGVQGEKGEQGPAGPPGFQ 474
Score = 49.7 bits (119), Expect = 5e-06
Identities = 13/41 (31%), Positives = 13/41 (31%), Gaps = 6/41 (14%)
Query: 555 PTGPKG-----GPPPPPPPPGGMGPPPPP-MPGMPGPPPPP 589
P GP G G G G P P G GPP
Sbjct: 416 PKGPTGEPGKPGEKGNVGLAGARGAPGPDGNNGAQGPPGLQ 456
Score = 49.3 bits (118), Expect = 5e-06
Identities = 13/38 (34%), Positives = 14/38 (36%), Gaps = 3/38 (7%)
Query: 555 PTGPKG--GPPPPPPPPGGMGPPPPP-MPGMPGPPPPP 589
G G GP P G +G P P G PG P
Sbjct: 392 IDGRPGPIGPAGPRGEAGAIGFPGPKGPTGEPGKPGEK 429
Score = 49.3 bits (118), Expect = 5e-06
Identities = 13/43 (30%), Positives = 14/43 (32%), Gaps = 6/43 (13%)
Query: 555 PTGPKG--GPPPPPPPPGGMGPP----PPPMPGMPGPPPPPMP 591
GP G GPP PG G P + G G P
Sbjct: 305 EIGPAGPPGPPGLRGNPGSRGLPGADGVAGVMGPAGSRGTSGP 347
Score = 49.3 bits (118), Expect = 5e-06
Identities = 14/38 (36%), Positives = 15/38 (39%), Gaps = 3/38 (7%)
Query: 555 PTGPKG--GPPPPPPPPGGMGPPPPP-MPGMPGPPPPP 589
P G +G GP P G GPP P G G P
Sbjct: 512 PPGERGAAGPTGPIGSRGPSGPPGPDGNKGEAGAVGPA 549
Score = 49.3 bits (118), Expect = 5e-06
Identities = 13/38 (34%), Positives = 14/38 (36%), Gaps = 3/38 (7%)
Query: 555 PTGPKG--GPPPPPPPPGGMGPPPPP-MPGMPGPPPPP 589
G G GP G +GP P G GPP P
Sbjct: 140 ERGRVGAPGPAGARGSDGSVGPVGPAGPIGSAGPPGFP 177
Score = 49.3 bits (118), Expect = 5e-06
Identities = 12/38 (31%), Positives = 13/38 (34%), Gaps = 3/38 (7%)
Query: 555 PTGPKG--GPPPPPPPPGGMGPPPPP-MPGMPGPPPPP 589
G +G GPP PG GP PG G
Sbjct: 461 EKGEQGPAGPPGFQGLPGPAGPAGEAGKPGERGLHGEF 498
Score = 49.3 bits (118), Expect = 6e-06
Identities = 16/38 (42%), Positives = 16/38 (42%), Gaps = 3/38 (7%)
Query: 555 PTGPKG--GPPPPPPPPGGMGPP-PPPMPGMPGPPPPP 589
P G G G P P PG G P P G PG P P
Sbjct: 56 PPGKAGEDGHPGKPGRPGERGVPGPQGARGFPGTPGLP 93
Score = 49.3 bits (118), Expect = 6e-06
Identities = 12/38 (31%), Positives = 12/38 (31%), Gaps = 3/38 (7%)
Query: 555 PTGPKG--GPPPPPPPPGGMGPP-PPPMPGMPGPPPPP 589
P GP G G P G GP G GP
Sbjct: 725 PPGPPGAAGKEGIRGPRGDQGPVGRSGETGATGPTGFV 762
Score = 49.0 bits (117), Expect = 7e-06
Identities = 12/38 (31%), Positives = 14/38 (36%), Gaps = 3/38 (7%)
Query: 555 PTGPKG--GPPPPPPPPGGMGPPPPP-MPGMPGPPPPP 589
P G +G GP P G G G+PGP
Sbjct: 470 PPGFQGLPGPAGPAGEAGKPGERGLHGEFGLPGPAGAR 507
Score = 49.0 bits (117), Expect = 7e-06
Identities = 15/41 (36%), Positives = 15/41 (36%), Gaps = 6/41 (14%)
Query: 555 PTGPKG--GPPPPPPPPGGMGPP----PPPMPGMPGPPPPP 589
G G G P P G GPP PP G PG P
Sbjct: 800 ERGLPGVAGSVGEPGPLGIAGPPGARGPPGNVGNPGVNGAP 840
Score = 49.0 bits (117), Expect = 7e-06
Identities = 10/38 (26%), Positives = 11/38 (28%), Gaps = 3/38 (7%)
Query: 555 PTGPKG--GPPPPPPPPGGMGPP-PPPMPGMPGPPPPP 589
G KG G PG G PG+ G
Sbjct: 425 KPGEKGNVGLAGARGAPGPDGNNGAQGPPGLQGVQGEK 462
Score = 49.0 bits (117), Expect = 7e-06
Identities = 11/38 (28%), Positives = 12/38 (31%), Gaps = 3/38 (7%)
Query: 555 PTGPKG--GPPPPPPPPGGMGPP-PPPMPGMPGPPPPP 589
G +G G P P GG G G GP
Sbjct: 590 RDGARGLPGAIGAPGPAGGAGDRGEGGPAGPAGPAGAR 627
Score = 49.0 bits (117), Expect = 7e-06
Identities = 12/38 (31%), Positives = 12/38 (31%), Gaps = 3/38 (7%)
Query: 555 PTGPKG--GPPPPPPPPGGMGPPPPP-MPGMPGPPPPP 589
G KG G G G P PG PG P
Sbjct: 92 LPGFKGIRGHNGLDGLTGQPGAPGVKGEPGAPGENGTP 129
Score = 49.0 bits (117), Expect = 8e-06
Identities = 13/38 (34%), Positives = 15/38 (39%), Gaps = 3/38 (7%)
Query: 555 PTGPKG--GPPPPPPPPGGMGPPPPP-MPGMPGPPPPP 589
G G G P G +G P P + G PG PP
Sbjct: 791 FLGLPGSRGERGLPGVAGSVGEPGPLGIAGPPGARGPP 828
Score = 49.0 bits (117), Expect = 8e-06
Identities = 16/41 (39%), Positives = 17/41 (41%), Gaps = 6/41 (14%)
Query: 555 PTGPKG-----GPPPPPPPPGGMGPPPPP-MPGMPGPPPPP 589
+G KG G P PP P G G G GPP PP
Sbjct: 275 ESGNKGEPGAVGQPGPPGPSGEEGKRGSTGEIGPAGPPGPP 315
Score = 49.0 bits (117), Expect = 8e-06
Identities = 17/40 (42%), Positives = 18/40 (45%), Gaps = 3/40 (7%)
Query: 555 PTGPKG--GPPPPPPPPGGMGPPPPP-MPGMPGPPPPPMP 591
P GP G GP P G G P PG+PGP P P
Sbjct: 212 PVGPPGNAGPNGLPGAKGAAGLPGVAGAPGLPGPRGIPGP 251
Score = 49.0 bits (117), Expect = 8e-06
Identities = 12/38 (31%), Positives = 13/38 (34%), Gaps = 3/38 (7%)
Query: 555 PTGPKG--GPPPPPPPPGGMGPP-PPPMPGMPGPPPPP 589
G G G P P G G P P +PG G
Sbjct: 65 HPGKPGRPGERGVPGPQGARGFPGTPGLPGFKGIRGHN 102
Score = 48.6 bits (116), Expect = 9e-06
Identities = 14/40 (35%), Positives = 16/40 (40%), Gaps = 4/40 (10%)
Query: 553 GIPTGPKG--GPPPPPPPPGGMGPPPPP-MPGMPGPPPPP 589
G+P G +G G P G GP PG GPP
Sbjct: 793 GLP-GSRGERGLPGVAGSVGEPGPLGIAGPPGARGPPGNV 831
Score = 48.6 bits (116), Expect = 9e-06
Identities = 12/38 (31%), Positives = 12/38 (31%), Gaps = 3/38 (7%)
Query: 555 PTGPKG--GPPPPPPPPGGMGPPPPP-MPGMPGPPPPP 589
P G G G P G G P PG G P
Sbjct: 827 PPGNVGNPGVNGAPGEAGRDGNPGNDGPPGRDGQPGHK 864
Score = 48.6 bits (116), Expect = 1e-05
Identities = 14/38 (36%), Positives = 15/38 (39%), Gaps = 3/38 (7%)
Query: 555 PTGPKG--GPPPPPPPPGGMGPPPPP-MPGMPGPPPPP 589
G G GP PPG GPP PG+ G P
Sbjct: 806 VAGSVGEPGPLGIAGPPGARGPPGNVGNPGVNGAPGEA 843
Score = 48.6 bits (116), Expect = 1e-05
Identities = 17/41 (41%), Positives = 17/41 (41%), Gaps = 6/41 (14%)
Query: 555 PTGPKG--GPPPPPPPPGGMGPPPPP----MPGMPGPPPPP 589
GP G G P P G GPP PP G PG P P
Sbjct: 32 FQGPPGEPGEPGQTGPAGARGPPGPPGKAGEDGHPGKPGRP 72
Score = 48.6 bits (116), Expect = 1e-05
Identities = 12/38 (31%), Positives = 13/38 (34%), Gaps = 3/38 (7%)
Query: 555 PTGPKG--GPPPPPPPPGGMGPPPPP-MPGMPGPPPPP 589
G +G G P P P G GP PG G
Sbjct: 626 ARGIRGERGEPGPVGPSGFAGPAGAAGQPGAKGERGTK 663
Score = 48.6 bits (116), Expect = 1e-05
Identities = 12/38 (31%), Positives = 13/38 (34%), Gaps = 3/38 (7%)
Query: 555 PTGPKG--GPPPPPPPPGGMGPP-PPPMPGMPGPPPPP 589
TG G G P PG G P G+PG
Sbjct: 107 LTGQPGAPGVKGEPGAPGENGTPGQKGARGLPGERGRV 144
Score = 48.2 bits (115), Expect = 1e-05
Identities = 15/38 (39%), Positives = 15/38 (39%), Gaps = 3/38 (7%)
Query: 555 PTGPKG--GPPPPPPPPGGMGPPPPPM-PGMPGPPPPP 589
GP G GP PPG G P P G G P P
Sbjct: 158 SVGPVGPAGPIGSAGPPGFPGAPGPKGELGPVGNPGPA 195
Score = 48.2 bits (115), Expect = 1e-05
Identities = 11/38 (28%), Positives = 12/38 (31%), Gaps = 3/38 (7%)
Query: 555 PTGPKG--GPPPPPPPPGGMGPPPPP-MPGMPGPPPPP 589
G G G P P G G P P G+ G
Sbjct: 68 KPGRPGERGVPGPQGARGFPGTPGLPGFKGIRGHNGLD 105
Score = 48.2 bits (115), Expect = 1e-05
Identities = 16/38 (42%), Positives = 16/38 (42%), Gaps = 3/38 (7%)
Query: 555 PTGPKG--GPPPPPPPPGGMGPP-PPPMPGMPGPPPPP 589
TG G G PP P G GPP PP G G P
Sbjct: 704 MTGFPGAAGRTGPPGPSGLTGPPGPPGAAGKEGIRGPR 741
Score = 48.2 bits (115), Expect = 1e-05
Identities = 15/47 (31%), Positives = 17/47 (36%), Gaps = 12/47 (25%)
Query: 555 PTGPKG--GPPPPPPPPGGMGPP----------PPPMPGMPGPPPPP 589
P G G G P P G G P P +PG+ G P P
Sbjct: 353 PNGDSGRPGEPGLMGPRGFPGSPGNIGPAGKEGPVGLPGIDGRPGPI 399
Score = 48.2 bits (115), Expect = 1e-05
Identities = 15/43 (34%), Positives = 15/43 (34%), Gaps = 6/43 (13%)
Query: 555 PTGPKG--GPPPPPPPPGGMGPPPPP----MPGMPGPPPPPMP 591
GP G GPP PG G P PG GPP
Sbjct: 818 IAGPPGARGPPGNVGNPGVNGAPGEAGRDGNPGNDGPPGRDGQ 860
Score = 47.8 bits (114), Expect = 1e-05
Identities = 14/38 (36%), Positives = 15/38 (39%), Gaps = 3/38 (7%)
Query: 555 PTGPKG--GPPPPPPPPGGMGPPPPP-MPGMPGPPPPP 589
P G G G P P P G +GP P G GP
Sbjct: 167 PIGSAGPPGFPGAPGPKGELGPVGNPGPAGPAGPRGEV 204
Score = 47.8 bits (114), Expect = 2e-05
Identities = 13/38 (34%), Positives = 14/38 (36%), Gaps = 3/38 (7%)
Query: 555 PTGPKG--GPPPPPPPPGGMGPP-PPPMPGMPGPPPPP 589
GP G G P G G P PG+ GP P
Sbjct: 335 VMGPAGSRGTSGPAGVRGPNGDSGRPGEPGLMGPRGFP 372
Score = 47.8 bits (114), Expect = 2e-05
Identities = 10/41 (24%), Positives = 13/41 (31%), Gaps = 6/41 (14%)
Query: 555 PTGPKG--GPPPPPPPPGGMGPPPPP----MPGMPGPPPPP 589
P G +G G P G G +PG+ G
Sbjct: 917 PQGIRGDDGEPGDKGDKGIKGDRGHNGLQGLPGLAGHHGDQ 957
Score = 47.8 bits (114), Expect = 2e-05
Identities = 13/40 (32%), Positives = 14/40 (35%), Gaps = 3/40 (7%)
Query: 555 PTGPKG--GPPPPPPPPGGMGPPPPP-MPGMPGPPPPPMP 591
GP G G P G GP + G G P P P
Sbjct: 602 APGPAGGAGDRGEGGPAGPAGPAGARGIRGERGEPGPVGP 641
Score = 47.8 bits (114), Expect = 2e-05
Identities = 13/38 (34%), Positives = 13/38 (34%), Gaps = 3/38 (7%)
Query: 555 PTGPKG--GPPPPPPPPGGMGPPPPP-MPGMPGPPPPP 589
G G GPP P G G G PGPP
Sbjct: 281 EPGAVGQPGPPGPSGEEGKRGSTGEIGPAGPPGPPGLR 318
Score = 47.8 bits (114), Expect = 2e-05
Identities = 15/38 (39%), Positives = 15/38 (39%), Gaps = 3/38 (7%)
Query: 555 PTGPKG--GPPPPPPPPGGMGPPPPP-MPGMPGPPPPP 589
P GP G GP P G G P G GPP P
Sbjct: 683 PPGPVGAAGPAGPRGDAGPTGMTGFPGAAGRTGPPGPS 720
Score = 47.4 bits (113), Expect = 2e-05
Identities = 12/38 (31%), Positives = 14/38 (36%), Gaps = 3/38 (7%)
Query: 555 PTGPKG--GPPPPPPPPGGMGPP-PPPMPGMPGPPPPP 589
GP G GP PG +G P G+PG
Sbjct: 773 SAGPPGPPGPQGLLGAPGFLGLPGSRGERGLPGVAGSV 810
Score = 47.4 bits (113), Expect = 2e-05
Identities = 13/37 (35%), Positives = 14/37 (37%), Gaps = 4/37 (10%)
Query: 555 PTGPKG--GPPPPPPPPGGMGPPPPPMPGMPGPPPPP 589
GPKG G P P G +G G PGP
Sbjct: 413 FPGPKGPTGEPGKPGEKGNVGLAGAR--GAPGPDGNN 447
Score = 47.4 bits (113), Expect = 2e-05
Identities = 12/38 (31%), Positives = 13/38 (34%), Gaps = 3/38 (7%)
Query: 555 PTGPKG--GPPPPPPPPGGMGPP-PPPMPGMPGPPPPP 589
G +G GP P G GP PG G P
Sbjct: 656 AKGERGTKGPVGEQGPVGPQGPVGAAGPPGPVGAAGPA 693
Score = 47.4 bits (113), Expect = 2e-05
Identities = 11/38 (28%), Positives = 12/38 (31%), Gaps = 3/38 (7%)
Query: 555 PTGPKG--GPPPPPPPPGGMGPP-PPPMPGMPGPPPPP 589
G G G G G P P + G PG P
Sbjct: 89 TPGLPGFKGIRGHNGLDGLTGQPGAPGVKGEPGAPGEN 126
Score = 47.4 bits (113), Expect = 2e-05
Identities = 14/45 (31%), Positives = 15/45 (33%), Gaps = 7/45 (15%)
Query: 551 AAGIPTGPKG--GPPPPPPPPGGMGPP----PPPMPGMPGPPPPP 589
+G GP G G P G GP P G G PP
Sbjct: 641 PSGFA-GPAGAAGQPGAKGERGTKGPVGEQGPVGPQGPVGAAGPP 684
Score = 47.4 bits (113), Expect = 2e-05
Identities = 11/38 (28%), Positives = 11/38 (28%), Gaps = 3/38 (7%)
Query: 555 PTGPKG--GPPPPPPPPGGMGPP-PPPMPGMPGPPPPP 589
G G G P G GP G G P P
Sbjct: 326 LPGADGVAGVMGPAGSRGTSGPAGVRGPNGDSGRPGEP 363
Score = 47.4 bits (113), Expect = 2e-05
Identities = 12/38 (31%), Positives = 13/38 (34%), Gaps = 3/38 (7%)
Query: 555 PTGPKG--GPPPPPPPPGGMGPP-PPPMPGMPGPPPPP 589
G +G G P P G G P G G PP
Sbjct: 137 LPGERGRVGAPGPAGARGSDGSVGPVGPAGPIGSAGPP 174
Score = 47.4 bits (113), Expect = 2e-05
Identities = 13/37 (35%), Positives = 14/37 (37%), Gaps = 4/37 (10%)
Query: 555 PTGPKG--GPPPPPPPPGGMGPPPPPMPGMPGPPPPP 589
GP G G G +GP PP G PG P
Sbjct: 287 QPGPPGPSGEEGKRGSTGEIGPAGPP--GPPGLRGNP 321
Score = 47.4 bits (113), Expect = 2e-05
Identities = 13/38 (34%), Positives = 13/38 (34%), Gaps = 3/38 (7%)
Query: 555 PTGPKG--GPPPPPPPPGGMGPPPPP-MPGMPGPPPPP 589
P GP G G PG G P G GP P
Sbjct: 881 PVGPVGEPGKLGNRGEPGPAGAVGPAGAVGPRGPSGPQ 918
Score = 47.4 bits (113), Expect = 2e-05
Identities = 13/38 (34%), Positives = 13/38 (34%), Gaps = 3/38 (7%)
Query: 555 PTGPKG--GPPPPPPPPGGMGPPPPP-MPGMPGPPPPP 589
GP G GP P G GP P G G P
Sbjct: 377 NIGPAGKEGPVGLPGIDGRPGPIGPAGPRGEAGAIGFP 414
Score = 47.4 bits (113), Expect = 2e-05
Identities = 12/38 (31%), Positives = 13/38 (34%), Gaps = 3/38 (7%)
Query: 555 PTGPKG--GPPPPPPPPGGMGPP-PPPMPGMPGPPPPP 589
G +G G P P G GP P G G P
Sbjct: 953 HHGDQGAPGAVGPAGPRGPAGPSGPAGKIGRIGAVGPA 990
Score = 47.4 bits (113), Expect = 2e-05
Identities = 15/38 (39%), Positives = 15/38 (39%), Gaps = 3/38 (7%)
Query: 555 PTGPKG--GPPPPPPPPGGMGPPPPP-MPGMPGPPPPP 589
P G G G P G GP P G PGPP P
Sbjct: 746 PVGRSGETGATGPTGFVGEKGPTGEPGSAGPPGPPGPQ 783
Score = 47.0 bits (112), Expect = 3e-05
Identities = 13/38 (34%), Positives = 13/38 (34%), Gaps = 3/38 (7%)
Query: 555 PTGPKG--GPPPPPPPPGGMGPP-PPPMPGMPGPPPPP 589
G G G P G GP P G GPP P
Sbjct: 650 AAGQPGAKGERGTKGPVGEQGPVGPQGPVGAAGPPGPV 687
Score = 47.0 bits (112), Expect = 3e-05
Identities = 14/38 (36%), Positives = 15/38 (39%), Gaps = 3/38 (7%)
Query: 555 PTGPKG--GPPPPPPPPGGMGPPPPP-MPGMPGPPPPP 589
+GP G GP PG G P PG PG P
Sbjct: 344 TSGPAGVRGPNGDSGRPGEPGLMGPRGFPGSPGNIGPA 381
Score = 47.0 bits (112), Expect = 3e-05
Identities = 11/40 (27%), Positives = 11/40 (27%), Gaps = 3/40 (7%)
Query: 555 PTGPKG--GPPPPPPPPGGMGPPPPP-MPGMPGPPPPPMP 591
GP G G P G G G G P P
Sbjct: 635 EPGPVGPSGFAGPAGAAGQPGAKGERGTKGPVGEQGPVGP 674
Score = 47.0 bits (112), Expect = 3e-05
Identities = 12/38 (31%), Positives = 12/38 (31%), Gaps = 3/38 (7%)
Query: 555 PTGPKG--GPPPPPPPPGGMGPPPPP-MPGMPGPPPPP 589
GP G GP G G P P G GP
Sbjct: 614 EGGPAGPAGPAGARGIRGERGEPGPVGPSGFAGPAGAA 651
Score = 47.0 bits (112), Expect = 3e-05
Identities = 12/41 (29%), Positives = 15/41 (36%), Gaps = 6/41 (14%)
Query: 555 PTGPKG-----GPPPPPPPPGGMGPPPPP-MPGMPGPPPPP 589
P GP+G GP G +GP + G G P
Sbjct: 965 PAGPRGPAGPSGPAGKIGRIGAVGPAGAAGIRGSQGSQGPA 1005
Score = 47.0 bits (112), Expect = 3e-05
Identities = 10/40 (25%), Positives = 11/40 (27%), Gaps = 3/40 (7%)
Query: 555 PTGPKG--GPPPPPPPPGGMGPPPPP-MPGMPGPPPPPMP 591
P G G G P G +G G G P
Sbjct: 728 PPGAAGKEGIRGPRGDQGPVGRSGETGATGPTGFVGEKGP 767
Score = 47.0 bits (112), Expect = 3e-05
Identities = 13/41 (31%), Positives = 13/41 (31%), Gaps = 6/41 (14%)
Query: 555 PTGPKG--GPPPPPPPPGGMGPPPPP----MPGMPGPPPPP 589
P GP G G P G G P P G PG
Sbjct: 479 PAGPAGEAGKPGERGLHGEFGLPGPAGARGERGPPGERGAA 519
Score = 46.6 bits (111), Expect = 3e-05
Identities = 16/41 (39%), Positives = 17/41 (41%), Gaps = 3/41 (7%)
Query: 555 PTGPKG--GPPPPPPPPGGMGPPPPP-MPGMPGPPPPPMPE 592
TG +G G P P G G P G PGPP P E
Sbjct: 257 ATGARGLVGEPGPAGSKGESGNKGEPGAVGQPGPPGPSGEE 297
Score = 46.6 bits (111), Expect = 3e-05
Identities = 13/41 (31%), Positives = 15/41 (36%), Gaps = 6/41 (14%)
Query: 555 PTGPKG--GPPPPPPPPGGMGPPPPP----MPGMPGPPPPP 589
G +G G PP G +GP P G PGP
Sbjct: 863 HKGERGTPGNAGPPGAVGPVGPVGEPGKLGNRGEPGPAGAV 903
Score = 46.6 bits (111), Expect = 3e-05
Identities = 13/38 (34%), Positives = 13/38 (34%), Gaps = 3/38 (7%)
Query: 555 PTGPKG--GPPPPPPPPGGMGPPPPP-MPGMPGPPPPP 589
P GP G GP PG G G GP P
Sbjct: 638 PVGPSGFAGPAGAAGQPGAKGERGTKGPVGEQGPVGPQ 675
Score = 46.6 bits (111), Expect = 4e-05
Identities = 16/44 (36%), Positives = 17/44 (38%), Gaps = 4/44 (9%)
Query: 551 AAGIPTGPKG--GPPPPPPPPGGMGPP-PPPMPGMPGPPPPPMP 591
G P G G GPP P G GPP G+ GP P
Sbjct: 704 MTGFP-GAAGRTGPPGPSGLTGPPGPPGAAGKEGIRGPRGDQGP 746
Score = 46.6 bits (111), Expect = 4e-05
Identities = 16/46 (34%), Positives = 16/46 (34%), Gaps = 9/46 (19%)
Query: 555 PTGPKG--GPPPPPPPPGGMGPP-------PPPMPGMPGPPPPPMP 591
G G G P P G GPP P G GP PP P
Sbjct: 491 ERGLHGEFGLPGPAGARGERGPPGERGAAGPTGPIGSRGPSGPPGP 536
Score = 46.6 bits (111), Expect = 4e-05
Identities = 11/38 (28%), Positives = 11/38 (28%), Gaps = 3/38 (7%)
Query: 555 PTGPKG--GPPPPPPPPGGMGPP-PPPMPGMPGPPPPP 589
G G G P G G P G PG P
Sbjct: 341 SRGTSGPAGVRGPNGDSGRPGEPGLMGPRGFPGSPGNI 378
Score = 46.6 bits (111), Expect = 4e-05
Identities = 12/41 (29%), Positives = 12/41 (29%), Gaps = 6/41 (14%)
Query: 555 PTGPKG--GPPPPPPPPGGMGPP----PPPMPGMPGPPPPP 589
G KG G P PG G G PGP
Sbjct: 113 APGVKGEPGAPGENGTPGQKGARGLPGERGRVGAPGPAGAR 153
Score = 46.6 bits (111), Expect = 4e-05
Identities = 12/40 (30%), Positives = 13/40 (32%), Gaps = 3/40 (7%)
Query: 555 PTGPKG--GPPPPPPPPGGMGPP-PPPMPGMPGPPPPPMP 591
G G G P G +G P P G G P P
Sbjct: 125 ENGTPGQKGARGLPGERGRVGAPGPAGARGSDGSVGPVGP 164
Score = 46.6 bits (111), Expect = 4e-05
Identities = 13/38 (34%), Positives = 14/38 (36%), Gaps = 3/38 (7%)
Query: 555 PTGPKG--GPPPPPPPPGGMGPP-PPPMPGMPGPPPPP 589
G KG G P G +GP P G PGP
Sbjct: 653 QPGAKGERGTKGPVGEQGPVGPQGPVGAAGPPGPVGAA 690
Score = 46.6 bits (111), Expect = 4e-05
Identities = 10/38 (26%), Positives = 10/38 (26%), Gaps = 3/38 (7%)
Query: 555 PTGPKG--GPPPPPPPPGGMGPP-PPPMPGMPGPPPPP 589
G G GP P P G G G G
Sbjct: 959 APGAVGPAGPRGPAGPSGPAGKIGRIGAVGPAGAAGIR 996
Score = 46.6 bits (111), Expect = 4e-05
Identities = 12/40 (30%), Positives = 13/40 (32%), Gaps = 3/40 (7%)
Query: 555 PTGPKG--GPPPPPPPPGGMGPPPPP-MPGMPGPPPPPMP 591
G G G PG G P G+ GPP P
Sbjct: 788 APGFLGLPGSRGERGLPGVAGSVGEPGPLGIAGPPGARGP 827
Score = 46.6 bits (111), Expect = 4e-05
Identities = 13/44 (29%), Positives = 14/44 (31%), Gaps = 9/44 (20%)
Query: 555 PTGPKG--GPPPPPPPPGGMGPP-------PPPMPGMPGPPPPP 589
GP+G G P P G GP P G GP
Sbjct: 365 LMGPRGFPGSPGNIGPAGKEGPVGLPGIDGRPGPIGPAGPRGEA 408
Score = 46.3 bits (110), Expect = 4e-05
Identities = 12/38 (31%), Positives = 13/38 (34%), Gaps = 3/38 (7%)
Query: 555 PTGPKG--GPPPPPPPPGGMGPPPPP-MPGMPGPPPPP 589
P G G G P P G +GP G GP
Sbjct: 884 PVGEPGKLGNRGEPGPAGAVGPAGAVGPRGPSGPQGIR 921
Score = 46.3 bits (110), Expect = 5e-05
Identities = 11/38 (28%), Positives = 11/38 (28%), Gaps = 3/38 (7%)
Query: 555 PTGPKG--GPPPPPPPPGGMGPPPPP-MPGMPGPPPPP 589
G G G P P G GP P G G
Sbjct: 950 LAGHHGDQGAPGAVGPAGPRGPAGPSGPAGKIGRIGAV 987
Score = 46.3 bits (110), Expect = 5e-05
Identities = 12/38 (31%), Positives = 12/38 (31%), Gaps = 3/38 (7%)
Query: 555 PTGPKG--GPPPPPPPPGGMGPP-PPPMPGMPGPPPPP 589
G KG G P PG GP P G G
Sbjct: 224 LPGAKGAAGLPGVAGAPGLPGPRGIPGPVGAAGATGAR 261
Score = 46.3 bits (110), Expect = 5e-05
Identities = 17/38 (44%), Positives = 19/38 (50%), Gaps = 3/38 (7%)
Query: 555 PTGPKG--GPPPPPPPPGGMGPPPPP-MPGMPGPPPPP 589
PTG G GPP PP P G +G P +PG G P
Sbjct: 767 PTGEPGSAGPPGPPGPQGLLGAPGFLGLPGSRGERGLP 804
Score = 46.3 bits (110), Expect = 5e-05
Identities = 11/38 (28%), Positives = 11/38 (28%), Gaps = 3/38 (7%)
Query: 555 PTGPKG--GPPPPPPPPGGMGPP-PPPMPGMPGPPPPP 589
G KG G G G P G PGP
Sbjct: 572 GKGEKGAPGLRGDTGATGRDGARGLPGAIGAPGPAGGA 609
Score = 46.3 bits (110), Expect = 5e-05
Identities = 10/38 (26%), Positives = 12/38 (31%), Gaps = 3/38 (7%)
Query: 555 PTGPKG--GPPPPPPPPGGMGPP-PPPMPGMPGPPPPP 589
G +G GP PG G P + G G
Sbjct: 71 RPGERGVPGPQGARGFPGTPGLPGFKGIRGHNGLDGLT 108
Score = 46.3 bits (110), Expect = 5e-05
Identities = 14/38 (36%), Positives = 16/38 (42%), Gaps = 3/38 (7%)
Query: 555 PTGPKG--GPPPPPPPPGGMGPP-PPPMPGMPGPPPPP 589
P GP+G G P PG G P + G G P P
Sbjct: 779 PPGPQGLLGAPGFLGLPGSRGERGLPGVAGSVGEPGPL 816
Score = 45.9 bits (109), Expect = 6e-05
Identities = 12/38 (31%), Positives = 12/38 (31%), Gaps = 3/38 (7%)
Query: 555 PTGPKG--GPPPPPPPPGGMGPP-PPPMPGMPGPPPPP 589
G G G PG GPP PG G P
Sbjct: 833 NPGVNGAPGEAGRDGNPGNDGPPGRDGQPGHKGERGTP 870
Score = 45.9 bits (109), Expect = 7e-05
Identities = 14/38 (36%), Positives = 14/38 (36%), Gaps = 3/38 (7%)
Query: 555 PTGPKG--GPPPPPPPPGGMGPPPPP-MPGMPGPPPPP 589
G G G P PPG G P G PG PP
Sbjct: 839 APGEAGRDGNPGNDGPPGRDGQPGHKGERGTPGNAGPP 876
Score = 45.9 bits (109), Expect = 7e-05
Identities = 10/38 (26%), Positives = 10/38 (26%), Gaps = 3/38 (7%)
Query: 555 PTGPKG--GPPPPPPPPGGMGPP-PPPMPGMPGPPPPP 589
G G G P G GP P G G
Sbjct: 947 LPGLAGHHGDQGAPGAVGPAGPRGPAGPSGPAGKIGRI 984
Score = 45.5 bits (108), Expect = 7e-05
Identities = 14/40 (35%), Positives = 14/40 (35%), Gaps = 3/40 (7%)
Query: 555 PTGPKG--GPPPPPPPPGGMGPP-PPPMPGMPGPPPPPMP 591
P G G GP P G G P G PGP P
Sbjct: 686 PVGAAGPAGPRGDAGPTGMTGFPGAAGRTGPPGPSGLTGP 725
Score = 45.1 bits (107), Expect = 1e-04
Identities = 12/38 (31%), Positives = 14/38 (36%), Gaps = 3/38 (7%)
Query: 555 PTGPKG--GPPPPPPPPGGMGPP-PPPMPGMPGPPPPP 589
G G G P P PG +G G+ G P P
Sbjct: 233 LPGVAGAPGLPGPRGIPGPVGAAGATGARGLVGEPGPA 270
Score = 45.1 bits (107), Expect = 1e-04
Identities = 9/38 (23%), Positives = 11/38 (28%), Gaps = 3/38 (7%)
Query: 555 PTGPKG--GPPPPPPPPGGMGPPPPP-MPGMPGPPPPP 589
GP+G GP G G + G G
Sbjct: 908 AVGPRGPSGPQGIRGDDGEPGDKGDKGIKGDRGHNGLQ 945
Score = 44.7 bits (106), Expect = 1e-04
Identities = 11/41 (26%), Positives = 12/41 (29%), Gaps = 6/41 (14%)
Query: 555 PTGPKG--GPPPPPPPPGGMGPP----PPPMPGMPGPPPPP 589
G G GP G GP P G+ G P
Sbjct: 596 LPGAIGAPGPAGGAGDRGEGGPAGPAGPAGARGIRGERGEP 636
Score = 44.7 bits (106), Expect = 1e-04
Identities = 13/47 (27%), Positives = 13/47 (27%), Gaps = 12/47 (25%)
Query: 555 PTGPKG--GPPPPPPPPGGMGPP----------PPPMPGMPGPPPPP 589
G G G PP G G PP G GP P
Sbjct: 842 EAGRDGNPGNDGPPGRDGQPGHKGERGTPGNAGPPGAVGPVGPVGEP 888
Score = 44.7 bits (106), Expect = 1e-04
Identities = 12/38 (31%), Positives = 12/38 (31%), Gaps = 3/38 (7%)
Query: 555 PTGPKG--GPPPPPPPPGGMGPP-PPPMPGMPGPPPPP 589
G G G P P G G P PG G P
Sbjct: 101 HNGLDGLTGQPGAPGVKGEPGAPGENGTPGQKGARGLP 138
Score = 44.7 bits (106), Expect = 1e-04
Identities = 14/38 (36%), Positives = 15/38 (39%), Gaps = 3/38 (7%)
Query: 555 PTGPKG--GPPPPPPPPGGMGPP-PPPMPGMPGPPPPP 589
P+GP G G P G G G GPP PP
Sbjct: 974 PSGPAGKIGRIGAVGPAGAAGIRGSQGSQGPAGPPGPP 1011
Score = 44.7 bits (106), Expect = 1e-04
Identities = 15/38 (39%), Positives = 15/38 (39%), Gaps = 3/38 (7%)
Query: 555 PTGPKG--GPPPPPPPPGGMGPPPPP-MPGMPGPPPPP 589
G G G P PPG G P P G PG P P
Sbjct: 5 KGGGPGPMGLMGPRGPPGASGAPGPQGFQGPPGEPGEP 42
Score = 44.7 bits (106), Expect = 2e-04
Identities = 12/37 (32%), Positives = 12/37 (32%), Gaps = 4/37 (10%)
Query: 555 PTGPKG--GPPPPPPPPGGMGPPPPPMPGMPGPPPPP 589
TG G G P PG G G GP P
Sbjct: 587 ATGRDGARGLPGAIGAPGPAGGAGDR--GEGGPAGPA 621
Score = 44.7 bits (106), Expect = 2e-04
Identities = 11/38 (28%), Positives = 12/38 (31%), Gaps = 3/38 (7%)
Query: 555 PTGPKG--GPPPPPPPPGGMGPP-PPPMPGMPGPPPPP 589
P G +G G G G G PG PP
Sbjct: 740 PRGDQGPVGRSGETGATGPTGFVGEKGPTGEPGSAGPP 777
Score = 44.7 bits (106), Expect = 2e-04
Identities = 12/38 (31%), Positives = 13/38 (34%), Gaps = 3/38 (7%)
Query: 555 PTGPKG--GPPPPPPPPGGMGPP-PPPMPGMPGPPPPP 589
GP G G PG +G P PP G G
Sbjct: 266 EPGPAGSKGESGNKGEPGAVGQPGPPGPSGEEGKRGST 303
Score = 44.3 bits (105), Expect = 2e-04
Identities = 12/37 (32%), Positives = 13/37 (35%), Gaps = 4/37 (10%)
Query: 555 PTGPKG--GPPPPPPPPGGMGPPPPPMPGMPGPPPPP 589
P G +G G P P G G P G G P
Sbjct: 623 PAGARGIRGERGEPGPVGPSGFAGPA--GAAGQPGAK 657
Score = 44.3 bits (105), Expect = 2e-04
Identities = 12/42 (28%), Positives = 13/42 (30%), Gaps = 4/42 (9%)
Query: 553 GIPTGPKG--GPPPPPPPPGGMGPP-PPPMPGMPGPPPPPMP 591
GIP G +G G P G G G G P
Sbjct: 559 GIP-GERGVAGVPGGKGEKGAPGLRGDTGATGRDGARGLPGA 599
Score = 43.9 bits (104), Expect = 2e-04
Identities = 15/44 (34%), Positives = 17/44 (38%), Gaps = 9/44 (20%)
Query: 555 PTGPKG--------GPPPPPPPPGGMGPPPPP-MPGMPGPPPPP 589
P GP+G GP PP G G P G+PG P
Sbjct: 197 PAGPRGEVGLPGLSGPVGPPGNAGPNGLPGAKGAAGLPGVAGAP 240
Score = 43.9 bits (104), Expect = 2e-04
Identities = 15/41 (36%), Positives = 17/41 (41%), Gaps = 6/41 (14%)
Query: 555 PTGPKG--GPPPPPPPPGGMGPP----PPPMPGMPGPPPPP 589
P GP G G P G +GPP P +PG G P
Sbjct: 194 PAGPAGPRGEVGLPGLSGPVGPPGNAGPNGLPGAKGAAGLP 234
Score = 43.6 bits (103), Expect = 3e-04
Identities = 11/38 (28%), Positives = 12/38 (31%), Gaps = 3/38 (7%)
Query: 555 PTGPKGGPPPP--PPPPGGMGPPPPP-MPGMPGPPPPP 589
GP G P PG +G P G GP
Sbjct: 872 NAGPPGAVGPVGPVGEPGKLGNRGEPGPAGAVGPAGAV 909
Score = 43.6 bits (103), Expect = 3e-04
Identities = 12/40 (30%), Positives = 12/40 (30%), Gaps = 3/40 (7%)
Query: 555 PTGPKG--GPPPPPPPPGGMGPPPPP-MPGMPGPPPPPMP 591
G G GP P G G P G GP P
Sbjct: 632 ERGEPGPVGPSGFAGPAGAAGQPGAKGERGTKGPVGEQGP 671
Score = 43.6 bits (103), Expect = 3e-04
Identities = 14/38 (36%), Positives = 15/38 (39%), Gaps = 3/38 (7%)
Query: 555 PTGPKG--GPPPPPPPPGGMGPP-PPPMPGMPGPPPPP 589
+G G G PP PG G P G PGPP
Sbjct: 23 ASGAPGPQGFQGPPGEPGEPGQTGPAGARGPPGPPGKA 60
Score = 43.2 bits (102), Expect = 4e-04
Identities = 9/43 (20%), Positives = 10/43 (23%), Gaps = 6/43 (13%)
Query: 555 PTGPKG--GPPPPPPPPGGMGPPPPP----MPGMPGPPPPPMP 591
G +G G G G P G GP
Sbjct: 941 HNGLQGLPGLAGHHGDQGAPGAVGPAGPRGPAGPSGPAGKIGR 983
Score = 42.4 bits (100), Expect = 7e-04
Identities = 16/38 (42%), Positives = 16/38 (42%), Gaps = 3/38 (7%)
Query: 555 PTGPKG--GPPPPPPPPGGMGPPPPP-MPGMPGPPPPP 589
GP G G G GPP PP PG PGPP
Sbjct: 986 AVGPAGAAGIRGSQGSQGPAGPPGPPGPPGPPGPPSGG 1023
Score = 42.0 bits (99), Expect = 9e-04
Identities = 12/38 (31%), Positives = 12/38 (31%), Gaps = 3/38 (7%)
Query: 555 PTGPKG--GPPPPPPPPGGMGPPPPP-MPGMPGPPPPP 589
P G G G PG GPP G G P
Sbjct: 854 PPGRDGQPGHKGERGTPGNAGPPGAVGPVGPVGEPGKL 891
Score = 40.5 bits (95), Expect = 0.003
Identities = 10/38 (26%), Positives = 10/38 (26%), Gaps = 3/38 (7%)
Query: 555 PTGPKG--GPPPPPPPPGGMGPPPPP-MPGMPGPPPPP 589
GP G G G GP G G P
Sbjct: 248 IPGPVGAAGATGARGLVGEPGPAGSKGESGNKGEPGAV 285
Score = 37.8 bits (88), Expect = 0.021
Identities = 13/31 (41%), Positives = 13/31 (41%), Gaps = 5/31 (16%)
Query: 557 GPKGGPPPPPPPPGGMGPPPPP-MPGMPGPP 586
G P P G MGP PP G PGP
Sbjct: 4 AKGG----GPGPMGLMGPRGPPGASGAPGPQ 30
>1y0f_A Collagen I alpha 1; native, in SITU, triple-helix, supermolecular,
packing structure; 5.16A {Rattus norvegicus} SCOP:
i.25.1.1 PDB: 1ygv_A 3hqv_A 3hr2_A
Length = 1054
Score = 53.6 bits (129), Expect = 3e-07
Identities = 15/41 (36%), Positives = 16/41 (39%), Gaps = 6/41 (14%)
Query: 555 PTGPKG-----GPPPPPPPPGGMGPPPPPM-PGMPGPPPPP 589
P G G G P PPG +GP G GPP P
Sbjct: 423 PKGAAGEPGKAGERGVPGPPGAVGPAGKDGEAGAQGPPGPA 463
Score = 53.2 bits (128), Expect = 4e-07
Identities = 14/38 (36%), Positives = 15/38 (39%), Gaps = 3/38 (7%)
Query: 555 PTGPKG--GPPPPPPPPGGMGPPPPP-MPGMPGPPPPP 589
P G +G G PPG GP PP PG G
Sbjct: 156 PAGARGNDGAAGAAGPPGPTGPTGPPGFPGAVGAKGEA 193
Score = 52.8 bits (127), Expect = 4e-07
Identities = 14/40 (35%), Positives = 15/40 (37%), Gaps = 3/40 (7%)
Query: 555 PTGPKG--GPPPPPPPPGGMGPP-PPPMPGMPGPPPPPMP 591
P GP G G P G +GP P G GP P
Sbjct: 894 PVGPAGKSGDRGETGPAGPIGPVGPAGARGPAGPQGPRGD 933
Score = 52.8 bits (127), Expect = 5e-07
Identities = 13/40 (32%), Positives = 13/40 (32%), Gaps = 3/40 (7%)
Query: 555 PTGPKG--GPPPPPPPPGGMGPP-PPPMPGMPGPPPPPMP 591
GPKG G P G GPP G G P
Sbjct: 420 FPGPKGAAGEPGKAGERGVPGPPGAVGPAGKDGEAGAQGP 459
Score = 52.0 bits (125), Expect = 8e-07
Identities = 12/40 (30%), Positives = 12/40 (30%), Gaps = 3/40 (7%)
Query: 555 PTGPKG--GPPPPPPPPGGMGPPPPP-MPGMPGPPPPPMP 591
GP G G G GP P PG PG
Sbjct: 153 APGPAGARGNDGAAGAAGPPGPTGPTGPPGFPGAVGAKGE 192
Score = 51.6 bits (124), Expect = 1e-06
Identities = 14/38 (36%), Positives = 15/38 (39%), Gaps = 3/38 (7%)
Query: 555 PTGPKG--GPPPPPPPPGGMGPPPPP-MPGMPGPPPPP 589
G +G GPP P P G G P G G P P
Sbjct: 519 FPGERGVEGPPGPAGPRGANGAPGNDGAKGDAGAPGAP 556
Score = 51.6 bits (124), Expect = 1e-06
Identities = 17/38 (44%), Positives = 17/38 (44%), Gaps = 3/38 (7%)
Query: 555 PTGPKG--GPPPPPPPPGGMGPP-PPPMPGMPGPPPPP 589
P G G GPP PP P G G P G PG P P
Sbjct: 753 PAGRPGEVGPPGPPGPAGEKGAPGADGPAGAPGTPGPQ 790
Score = 51.6 bits (124), Expect = 1e-06
Identities = 13/38 (34%), Positives = 13/38 (34%), Gaps = 3/38 (7%)
Query: 555 PTGPKG--GPPPPPPPPGGMGPP-PPPMPGMPGPPPPP 589
G G G P PP G G G PGP P
Sbjct: 429 EPGKAGERGVPGPPGAVGPAGKDGEAGAQGPPGPAGPA 466
Score = 51.3 bits (123), Expect = 1e-06
Identities = 13/38 (34%), Positives = 14/38 (36%), Gaps = 3/38 (7%)
Query: 555 PTGPKG--GPPPPPPPPGGMGPP-PPPMPGMPGPPPPP 589
G +G G P P G G PG GP PP
Sbjct: 144 LPGERGRPGAPGPAGARGNDGAAGAAGPPGPTGPTGPP 181
Score = 51.3 bits (123), Expect = 2e-06
Identities = 15/40 (37%), Positives = 15/40 (37%), Gaps = 3/40 (7%)
Query: 555 PTGPKG--GPPPPPPPPGGMGPP-PPPMPGMPGPPPPPMP 591
P GP G G P P PPG G PG G P
Sbjct: 393 PPGPAGEDGRPGPAGPPGARGQAGVMGFPGPKGAAGEPGK 432
Score = 50.9 bits (122), Expect = 2e-06
Identities = 15/38 (39%), Positives = 17/38 (44%), Gaps = 3/38 (7%)
Query: 555 PTGPKG--GPPPPPPPPGGMGPPPPP-MPGMPGPPPPP 589
G +G GP P G GP P G+PGP PP
Sbjct: 453 EAGAQGPPGPAGPAGERGEQGPAGSPGFQGLPGPAGPP 490
Score = 50.9 bits (122), Expect = 2e-06
Identities = 18/41 (43%), Positives = 18/41 (43%), Gaps = 6/41 (14%)
Query: 555 PTGPKG--GPPPPPPPPGGMGPPPPP----MPGMPGPPPPP 589
P GPKG G P PG MGP P PG PGP
Sbjct: 120 PAGPKGEPGSPGENGAPGQMGPRGLPGERGRPGAPGPAGAR 160
Score = 50.5 bits (121), Expect = 2e-06
Identities = 13/38 (34%), Positives = 13/38 (34%), Gaps = 3/38 (7%)
Query: 555 PTGPKG--GPPPPPPPPGGMGPP-PPPMPGMPGPPPPP 589
P G G G P P P G G G GP P
Sbjct: 882 PPGAPGAPGAPGPVGPAGKSGDRGETGPAGPIGPVGPA 919
Score = 50.5 bits (121), Expect = 2e-06
Identities = 12/40 (30%), Positives = 12/40 (30%), Gaps = 3/40 (7%)
Query: 555 PTGPKG--GPPPPPPPPGGMGPP-PPPMPGMPGPPPPPMP 591
G G GP PG G P PG GP
Sbjct: 414 QAGVMGFPGPKGAAGEPGKAGERGVPGPPGAVGPAGKDGE 453
Score = 50.5 bits (121), Expect = 3e-06
Identities = 11/38 (28%), Positives = 11/38 (28%), Gaps = 3/38 (7%)
Query: 555 PTGPKG--GPPPPPPPPGGMGPP-PPPMPGMPGPPPPP 589
G G GP P PPG G G G
Sbjct: 165 AAGAAGPPGPTGPTGPPGFPGAVGAKGEAGPEGARGSE 202
Score = 50.5 bits (121), Expect = 3e-06
Identities = 12/38 (31%), Positives = 13/38 (34%), Gaps = 3/38 (7%)
Query: 555 PTGPKG--GPPPPPPPPGGMGPP-PPPMPGMPGPPPPP 589
G +G GPP P G G PG GP
Sbjct: 432 KAGERGVPGPPGAVGPAGKDGEAGAQGPPGPAGPAGER 469
Score = 50.5 bits (121), Expect = 3e-06
Identities = 14/38 (36%), Positives = 15/38 (39%), Gaps = 3/38 (7%)
Query: 555 PTGPKG--GPPPPPPPPGGMGPP-PPPMPGMPGPPPPP 589
P GP+G G P G G P P G PG P
Sbjct: 531 PAGPRGANGAPGNDGAKGDAGAPGAPGSQGAPGLQGMP 568
Score = 50.5 bits (121), Expect = 3e-06
Identities = 11/38 (28%), Positives = 11/38 (28%), Gaps = 3/38 (7%)
Query: 555 PTGPKG--GPPPPPPPPGGMGPPPPP-MPGMPGPPPPP 589
G G GP P G G P G GP
Sbjct: 885 APGAPGAPGPVGPAGKSGDRGETGPAGPIGPVGPAGAR 922
Score = 50.5 bits (121), Expect = 3e-06
Identities = 13/38 (34%), Positives = 13/38 (34%), Gaps = 3/38 (7%)
Query: 555 PTGPKG--GPPPPPPPPGGMGPP-PPPMPGMPGPPPPP 589
G KG G G GP P PG PG P
Sbjct: 99 LPGMKGHRGFSGLDGAKGDAGPAGPKGEPGSPGENGAP 136
Score = 50.5 bits (121), Expect = 3e-06
Identities = 13/38 (34%), Positives = 13/38 (34%), Gaps = 3/38 (7%)
Query: 555 PTGPKG--GPPPPPPPPGGMGPP-PPPMPGMPGPPPPP 589
P GP G G P G G P PG G P
Sbjct: 528 PPGPAGPRGANGAPGNDGAKGDAGAPGAPGSQGAPGLQ 565
Score = 50.5 bits (121), Expect = 3e-06
Identities = 12/38 (31%), Positives = 12/38 (31%), Gaps = 3/38 (7%)
Query: 555 PTGPKG--GPPPPPPPPGGMGPPPPP-MPGMPGPPPPP 589
G G G G GPP P G PG P
Sbjct: 150 RPGAPGPAGARGNDGAAGAAGPPGPTGPTGPPGFPGAV 187
Score = 50.1 bits (120), Expect = 3e-06
Identities = 14/38 (36%), Positives = 14/38 (36%), Gaps = 3/38 (7%)
Query: 555 PTGPKG--GPPPPPPPPGGMGPPPPP-MPGMPGPPPPP 589
GPKG G P P G G P PG G P
Sbjct: 339 VAGPKGPAGERGSPGPAGPKGSPGEAGRPGEAGLPGAK 376
Score = 50.1 bits (120), Expect = 3e-06
Identities = 15/38 (39%), Positives = 16/38 (42%), Gaps = 3/38 (7%)
Query: 555 PTGPKG--GPPPPPPPPGGMGPPPPP-MPGMPGPPPPP 589
TGP G G P P PG +GP G GP P
Sbjct: 876 ETGPAGPPGAPGAPGAPGPVGPAGKSGDRGETGPAGPI 913
Score = 50.1 bits (120), Expect = 3e-06
Identities = 14/38 (36%), Positives = 15/38 (39%), Gaps = 3/38 (7%)
Query: 555 PTGPKG--GPPPPPPPPGGMGPP-PPPMPGMPGPPPPP 589
P G +G G P G GP P G PGP P
Sbjct: 321 PPGERGGPGSRGFPGADGVAGPKGPAGERGSPGPAGPK 358
Score = 49.7 bits (119), Expect = 4e-06
Identities = 18/38 (47%), Positives = 18/38 (47%), Gaps = 3/38 (7%)
Query: 555 PTGPKG--GPPPPPPPPGGMGPPPPP-MPGMPGPPPPP 589
G KG G P P P G GPP P G PGP PP
Sbjct: 372 LPGAKGLTGSPGSPGPDGKTGPPGPAGEDGRPGPAGPP 409
Score = 49.7 bits (119), Expect = 4e-06
Identities = 11/38 (28%), Positives = 12/38 (31%), Gaps = 3/38 (7%)
Query: 555 PTGPKG--GPPPPPPPPGGMGPPPPP-MPGMPGPPPPP 589
G +G G PPG GP PG G
Sbjct: 513 ARGERGFPGERGVEGPPGPAGPRGANGAPGNDGAKGDA 550
Score = 49.7 bits (119), Expect = 5e-06
Identities = 12/43 (27%), Positives = 13/43 (30%), Gaps = 6/43 (13%)
Query: 555 PTGPKG--GPPPPPPPPGGMGPP----PPPMPGMPGPPPPPMP 591
G G G P PG G P +PG G P
Sbjct: 546 AKGDAGAPGAPGSQGAPGLQGMPGERGAAGLPGPKGDRGDAGP 588
Score = 49.7 bits (119), Expect = 5e-06
Identities = 13/38 (34%), Positives = 14/38 (36%), Gaps = 3/38 (7%)
Query: 555 PTGPKG--GPPPPPPPPGGMGPPPPP-MPGMPGPPPPP 589
GP+G G P PG G G GPP P
Sbjct: 138 QMGPRGLPGERGRPGAPGPAGARGNDGAAGAAGPPGPT 175
Score = 49.7 bits (119), Expect = 5e-06
Identities = 15/38 (39%), Positives = 15/38 (39%), Gaps = 3/38 (7%)
Query: 555 PTGPKG--GPPPPPPPPGGMGPP-PPPMPGMPGPPPPP 589
G G G PP P G GPP P G PGP
Sbjct: 666 EPGDAGAKGDAGPPGPAGPAGPPGPIGNVGAPGPKGAR 703
Score = 49.3 bits (118), Expect = 5e-06
Identities = 14/40 (35%), Positives = 14/40 (35%), Gaps = 3/40 (7%)
Query: 555 PTGPKG--GPPPPPPPPGGMGPPPPP-MPGMPGPPPPPMP 591
GP G G P PG G P G G P P P
Sbjct: 318 LPGPPGERGGPGSRGFPGADGVAGPKGPAGERGSPGPAGP 357
Score = 49.3 bits (118), Expect = 5e-06
Identities = 14/38 (36%), Positives = 15/38 (39%), Gaps = 3/38 (7%)
Query: 555 PTGPKG--GPPPPPPPPGGMGPPPPP-MPGMPGPPPPP 589
GP G G P PG G P + G PG P P
Sbjct: 351 SPGPAGPKGSPGEAGRPGEAGLPGAKGLTGSPGSPGPD 388
Score = 49.3 bits (118), Expect = 6e-06
Identities = 11/38 (28%), Positives = 11/38 (28%), Gaps = 3/38 (7%)
Query: 555 PTGPKG--GPPPPPPPPGGMGPPPPP-MPGMPGPPPPP 589
G G GP G GP P G G P
Sbjct: 888 APGAPGPVGPAGKSGDRGETGPAGPIGPVGPAGARGPA 925
Score = 49.3 bits (118), Expect = 6e-06
Identities = 14/41 (34%), Positives = 15/41 (36%), Gaps = 6/41 (14%)
Query: 555 PTGPKG--GPPPPPPPPGGMGPPPPP----MPGMPGPPPPP 589
PTGP G G G G + G PGPP P
Sbjct: 177 PTGPPGFPGAVGAKGEAGPEGARGSEGPQGVRGEPGPPGPA 217
Score = 49.3 bits (118), Expect = 6e-06
Identities = 17/38 (44%), Positives = 18/38 (47%), Gaps = 3/38 (7%)
Query: 555 PTGPKG--GPPPPPPPPGGMGPPPPP-MPGMPGPPPPP 589
P+G G GPP P PPG GPP G PG P
Sbjct: 825 PSGASGERGPPGPMGPPGLAGPPGESGREGAPGAEGSP 862
Score = 49.3 bits (118), Expect = 6e-06
Identities = 16/38 (42%), Positives = 16/38 (42%), Gaps = 3/38 (7%)
Query: 555 PTGPKG--GPPPPPPPPGGMGPPPPP-MPGMPGPPPPP 589
TGP G G PP PPG G P G G P P
Sbjct: 750 ETGPAGRPGEVGPPGPPGPAGEKGAPGADGPAGAPGTP 787
Score = 49.3 bits (118), Expect = 6e-06
Identities = 11/40 (27%), Positives = 11/40 (27%), Gaps = 3/40 (7%)
Query: 555 PTGPKG--GPPPPPPPPGGMGPPPPP-MPGMPGPPPPPMP 591
G G G PG G PP G G P
Sbjct: 504 DLGAPGPSGARGERGFPGERGVEGPPGPAGPRGANGAPGN 543
Score = 49.0 bits (117), Expect = 6e-06
Identities = 13/41 (31%), Positives = 15/41 (36%), Gaps = 6/41 (14%)
Query: 555 PTGPKG--GPPPPPPPPGGMGPPPPP----MPGMPGPPPPP 589
P GP+G G G G + G PGPP P
Sbjct: 924 PAGPQGPRGDKGETGEEGDRGIKGHRGFSGLQGPPGPPGSP 964
Score = 49.0 bits (117), Expect = 7e-06
Identities = 14/38 (36%), Positives = 14/38 (36%), Gaps = 3/38 (7%)
Query: 555 PTGPKG--GPPPPPPPPGGMGPP-PPPMPGMPGPPPPP 589
P G G G P P P G G G PGP P
Sbjct: 141 PRGLPGERGRPGAPGPAGARGNDGAAGAAGPPGPTGPT 178
Score = 49.0 bits (117), Expect = 8e-06
Identities = 11/38 (28%), Positives = 12/38 (31%), Gaps = 3/38 (7%)
Query: 555 PTGPKG--GPPPPPPPPGGMGPP-PPPMPGMPGPPPPP 589
P G +G G P G G G GP P
Sbjct: 87 PQGARGLPGTAGLPGMKGHRGFSGLDGAKGDAGPAGPK 124
Score = 49.0 bits (117), Expect = 8e-06
Identities = 13/38 (34%), Positives = 13/38 (34%), Gaps = 3/38 (7%)
Query: 555 PTGPKG--GPPPPPPPPGGMGPPPPP-MPGMPGPPPPP 589
G G G P G GPP P G PGP
Sbjct: 657 ADGQPGAKGEPGDAGAKGDAGPPGPAGPAGPPGPIGNV 694
Score = 49.0 bits (117), Expect = 8e-06
Identities = 13/38 (34%), Positives = 13/38 (34%), Gaps = 3/38 (7%)
Query: 555 PTGPKG--GPPPPPPPPGGMGPPPPP-MPGMPGPPPPP 589
G G G P PG G PP G G P P
Sbjct: 369 EAGLPGAKGLTGSPGSPGPDGKTGPPGPAGEDGRPGPA 406
Score = 48.6 bits (116), Expect = 9e-06
Identities = 15/38 (39%), Positives = 17/38 (44%), Gaps = 3/38 (7%)
Query: 555 PTGPKG--GPPPPPPPPGGMGPP-PPPMPGMPGPPPPP 589
P+G G GP PP G G +PG GPP P
Sbjct: 969 PSGASGPAGPRGPPGSAGSPGKDGLNGLPGPIGPPGPR 1006
Score = 48.6 bits (116), Expect = 9e-06
Identities = 12/41 (29%), Positives = 12/41 (29%), Gaps = 6/41 (14%)
Query: 555 PTGPKG--GPPPPPPPPGGMGPP----PPPMPGMPGPPPPP 589
G G GP P G G P G G PP
Sbjct: 132 ENGAPGQMGPRGLPGERGRPGAPGPAGARGNDGAAGAAGPP 172
Score = 48.6 bits (116), Expect = 9e-06
Identities = 15/38 (39%), Positives = 15/38 (39%), Gaps = 3/38 (7%)
Query: 555 PTGPKG--GPPPPPPPPGGMGPP-PPPMPGMPGPPPPP 589
P G G G P P G G P G PGPP P
Sbjct: 612 PAGAPGDKGEAGPSGPAGPTGARGAPGDRGEPGPPGPA 649
Score = 48.6 bits (116), Expect = 9e-06
Identities = 13/38 (34%), Positives = 13/38 (34%), Gaps = 3/38 (7%)
Query: 555 PTGPKG--GPPPPPPPPGGMGPPPPP-MPGMPGPPPPP 589
GP G G P PG G P G PG P
Sbjct: 210 EPGPPGPAGAAGPAGNPGADGQPGAKGANGAPGIAGAP 247
Score = 48.6 bits (116), Expect = 9e-06
Identities = 13/38 (34%), Positives = 14/38 (36%), Gaps = 3/38 (7%)
Query: 555 PTGPKG--GPPPPPPPPGGMGPPPPP-MPGMPGPPPPP 589
+G G G P P G G P PG GP P
Sbjct: 108 FSGLDGAKGDAGPAGPKGEPGSPGENGAPGQMGPRGLP 145
Score = 48.6 bits (116), Expect = 9e-06
Identities = 15/40 (37%), Positives = 16/40 (40%), Gaps = 3/40 (7%)
Query: 555 PTGPKG--GPPPPPPPPGGMGPPPPP-MPGMPGPPPPPMP 591
GP+G G P PP P G GP P G PG
Sbjct: 201 SEGPQGVRGEPGPPGPAGAAGPAGNPGADGQPGAKGANGA 240
Score = 48.6 bits (116), Expect = 1e-05
Identities = 13/40 (32%), Positives = 13/40 (32%), Gaps = 3/40 (7%)
Query: 555 PTGPKG--GPPPPPPPPGGMGPP-PPPMPGMPGPPPPPMP 591
G G GP PG GP P G PG P
Sbjct: 336 ADGVAGPKGPAGERGSPGPAGPKGSPGEAGRPGEAGLPGA 375
Score = 48.6 bits (116), Expect = 1e-05
Identities = 14/38 (36%), Positives = 14/38 (36%), Gaps = 3/38 (7%)
Query: 555 PTGPKG--GPPPPPPPPGGMGPP-PPPMPGMPGPPPPP 589
G G GPP P PG GP P G G P
Sbjct: 873 DRGETGPAGPPGAPGAPGAPGPVGPAGKSGDRGETGPA 910
Score = 48.2 bits (115), Expect = 1e-05
Identities = 14/38 (36%), Positives = 14/38 (36%), Gaps = 3/38 (7%)
Query: 555 PTGPKG--GPPPPPPPPGGMGPP-PPPMPGMPGPPPPP 589
P GPKG G P G G PG PGP
Sbjct: 354 PAGPKGSPGEAGRPGEAGLPGAKGLTGSPGSPGPDGKT 391
Score = 48.2 bits (115), Expect = 1e-05
Identities = 14/44 (31%), Positives = 16/44 (36%), Gaps = 9/44 (20%)
Query: 555 PTGPKG--GPPPPPPPPGGMGPPPPP-------MPGMPGPPPPP 589
P GP G G P P G G P P + G+PG
Sbjct: 765 PPGPAGEKGAPGADGPAGAPGTPGPQGIAGQRGVVGLPGQRGER 808
Score = 48.2 bits (115), Expect = 1e-05
Identities = 14/38 (36%), Positives = 15/38 (39%), Gaps = 3/38 (7%)
Query: 555 PTGPKG--GPPPPPPPPGGMGPPPPP-MPGMPGPPPPP 589
P GP G GP P G G PG+ G P P
Sbjct: 213 PPGPAGAAGPAGNPGADGQPGAKGANGAPGIAGAPGFP 250
Score = 48.2 bits (115), Expect = 1e-05
Identities = 13/38 (34%), Positives = 13/38 (34%), Gaps = 3/38 (7%)
Query: 555 PTGPKG--GPPPPPPPPGGMGPP-PPPMPGMPGPPPPP 589
GP G G P G GPP P G G P
Sbjct: 507 APGPSGARGERGFPGERGVEGPPGPAGPRGANGAPGND 544
Score = 48.2 bits (115), Expect = 1e-05
Identities = 12/43 (27%), Positives = 12/43 (27%), Gaps = 6/43 (13%)
Query: 555 PTGPKG--GPPPPPPPPGGMGPP----PPPMPGMPGPPPPPMP 591
G G G G G PP PG GP P
Sbjct: 933 DKGETGEEGDRGIKGHRGFSGLQGPPGPPGSPGEQGPSGASGP 975
Score = 48.2 bits (115), Expect = 1e-05
Identities = 16/38 (42%), Positives = 17/38 (44%), Gaps = 3/38 (7%)
Query: 555 PTGPKG--GPPPPPPPPGGMGPPPPP-MPGMPGPPPPP 589
P G G G P P PPG G P +PG G P P
Sbjct: 474 PAGSPGFQGLPGPAGPPGEAGKPGEQGVPGDLGAPGPS 511
Score = 48.2 bits (115), Expect = 1e-05
Identities = 15/38 (39%), Positives = 15/38 (39%), Gaps = 3/38 (7%)
Query: 555 PTGPKG--GPPPPPPPPGGMGPPPPP-MPGMPGPPPPP 589
GP G G P P G GPP PP G G P
Sbjct: 39 FQGPPGEPGEPGASGPMGPRGPPGPPGKNGDDGEAGKP 76
Score = 48.2 bits (115), Expect = 1e-05
Identities = 12/41 (29%), Positives = 12/41 (29%), Gaps = 6/41 (14%)
Query: 555 PTGPKG--GPPPPPPPPGGMGPP----PPPMPGMPGPPPPP 589
P GP G GP P G GP G G
Sbjct: 909 PAGPIGPVGPAGARGPAGPQGPRGDKGETGEEGDRGIKGHR 949
Score = 48.2 bits (115), Expect = 1e-05
Identities = 14/40 (35%), Positives = 16/40 (40%), Gaps = 3/40 (7%)
Query: 555 PTGPKG--GPPPPPPPPGGMGPPPPP-MPGMPGPPPPPMP 591
P G +G GP P PG G P +PG G P
Sbjct: 345 PAGERGSPGPAGPKGSPGEAGRPGEAGLPGAKGLTGSPGS 384
Score = 48.2 bits (115), Expect = 1e-05
Identities = 14/41 (34%), Positives = 15/41 (36%), Gaps = 6/41 (14%)
Query: 555 PTGPKG--GPPPPPPPPGGMGPP----PPPMPGMPGPPPPP 589
P G +G GP PG GP P PG G P
Sbjct: 195 PEGARGSEGPQGVRGEPGPPGPAGAAGPAGNPGADGQPGAK 235
Score = 48.2 bits (115), Expect = 1e-05
Identities = 13/38 (34%), Positives = 15/38 (39%), Gaps = 3/38 (7%)
Query: 555 PTGPKG--GPPPPPPPPGGMGPPPPP-MPGMPGPPPPP 589
G +G G P P G G P G+ GPP P
Sbjct: 495 KPGEQGVPGDLGAPGPSGARGERGFPGERGVEGPPGPA 532
Score = 48.2 bits (115), Expect = 1e-05
Identities = 12/41 (29%), Positives = 12/41 (29%), Gaps = 6/41 (14%)
Query: 555 PTGPKG--GPPPPPPPPGGMGPP----PPPMPGMPGPPPPP 589
G G G P P G G P PG GP
Sbjct: 498 EQGVPGDLGAPGPSGARGERGFPGERGVEGPPGPAGPRGAN 538
Score = 48.2 bits (115), Expect = 1e-05
Identities = 13/38 (34%), Positives = 14/38 (36%), Gaps = 3/38 (7%)
Query: 555 PTGPKG--GPPPPPPPPGGMGPP-PPPMPGMPGPPPPP 589
P G G GP G +G P G PG P P
Sbjct: 780 PAGAPGTPGPQGIAGQRGVVGLPGQRGERGFPGLPGPS 817
Score = 47.8 bits (114), Expect = 2e-05
Identities = 15/40 (37%), Positives = 17/40 (42%), Gaps = 3/40 (7%)
Query: 555 PTGPKG--GPPPPPPPPGGMGPPPPP-MPGMPGPPPPPMP 591
P G +G G P P G G P G+PGPP P
Sbjct: 408 PPGARGQAGVMGFPGPKGAAGEPGKAGERGVPGPPGAVGP 447
Score = 47.8 bits (114), Expect = 2e-05
Identities = 14/38 (36%), Positives = 15/38 (39%), Gaps = 3/38 (7%)
Query: 555 PTGPKG--GPPPPPPPPGGMGPPPPP-MPGMPGPPPPP 589
+GP G GPP PG G P G PGP
Sbjct: 972 ASGPAGPRGPPGSAGSPGKDGLNGLPGPIGPPGPRGRT 1009
Score = 47.8 bits (114), Expect = 2e-05
Identities = 14/38 (36%), Positives = 14/38 (36%), Gaps = 3/38 (7%)
Query: 555 PTGPKG--GPPPPPPPPGGMGPP-PPPMPGMPGPPPPP 589
GP G G P PG G PG GP PP
Sbjct: 651 FAGPPGADGQPGAKGEPGDAGAKGDAGPPGPAGPAGPP 688
Score = 47.8 bits (114), Expect = 2e-05
Identities = 18/38 (47%), Positives = 18/38 (47%), Gaps = 3/38 (7%)
Query: 555 PTGPKG--GPPPPPPPPGGMGPPPPP-MPGMPGPPPPP 589
P GP G G P PP PG G PP PG PG P
Sbjct: 18 PMGPSGPRGLPGPPGAPGPQGFQGPPGEPGEPGASGPM 55
Score = 47.8 bits (114), Expect = 2e-05
Identities = 17/40 (42%), Positives = 17/40 (42%), Gaps = 3/40 (7%)
Query: 555 PTGPKG--GPPPPPPPPGGMGPPPPP-MPGMPGPPPPPMP 591
G G GP PP PPG G PG PG PP P
Sbjct: 48 EPGASGPMGPRGPPGPPGKNGDDGEAGKPGRPGERGPPGP 87
Score = 47.8 bits (114), Expect = 2e-05
Identities = 14/38 (36%), Positives = 14/38 (36%), Gaps = 3/38 (7%)
Query: 555 PTGPKG--GPPPPPPPPGGMGPPPPP-MPGMPGPPPPP 589
TGP G GP P G GP P G G P
Sbjct: 603 LTGPIGPPGPAGAPGDKGEAGPSGPAGPTGARGAPGDR 640
Score = 47.8 bits (114), Expect = 2e-05
Identities = 13/38 (34%), Positives = 13/38 (34%), Gaps = 3/38 (7%)
Query: 555 PTGPKG--GPPPPPPPPGGMGPPPPP-MPGMPGPPPPP 589
G G GPP P PG G P G G P
Sbjct: 600 VRGLTGPIGPPGPAGAPGDKGEAGPSGPAGPTGARGAP 637
Score = 47.8 bits (114), Expect = 2e-05
Identities = 13/38 (34%), Positives = 14/38 (36%), Gaps = 3/38 (7%)
Query: 555 PTGPKG--GPPPPPPPPGGMGPPPPP-MPGMPGPPPPP 589
G G GP P PG G P G+PG P
Sbjct: 114 AKGDAGPAGPKGEPGSPGENGAPGQMGPRGLPGERGRP 151
Score = 47.8 bits (114), Expect = 2e-05
Identities = 13/38 (34%), Positives = 13/38 (34%), Gaps = 3/38 (7%)
Query: 555 PTGPKG--GPPPPPPPPGGMGPP-PPPMPGMPGPPPPP 589
P GP G G PG G PP G G P
Sbjct: 60 PPGPPGKNGDDGEAGKPGRPGERGPPGPQGARGLPGTA 97
Score = 47.8 bits (114), Expect = 2e-05
Identities = 17/42 (40%), Positives = 19/42 (45%), Gaps = 4/42 (9%)
Query: 551 AAGIPTGPKG--GPPPPPPPPGGMGPP-PPPMPGMPGPPPPP 589
G+P GP G G P G GPP P PG+ GPP
Sbjct: 810 FPGLP-GPSGEPGKQGPSGASGERGPPGPMGPPGLAGPPGES 850
Score = 47.8 bits (114), Expect = 2e-05
Identities = 13/40 (32%), Positives = 13/40 (32%), Gaps = 3/40 (7%)
Query: 555 PTGPKG--GPPPPPPPPGGMGPPPPP-MPGMPGPPPPPMP 591
GP G G P G GP PG PGP
Sbjct: 705 SAGPPGATGFPGAAGRVGPPGPSGNAGPPGPPGPAGKEGS 744
Score = 47.4 bits (113), Expect = 2e-05
Identities = 14/44 (31%), Positives = 14/44 (31%), Gaps = 9/44 (20%)
Query: 555 PTGPKGGP--PPPPPPPGGMGPP-------PPPMPGMPGPPPPP 589
GP G PPG GP P PG G P P
Sbjct: 444 AVGPAGKDGEAGAQGPPGPAGPAGERGEQGPAGSPGFQGLPGPA 487
Score = 47.4 bits (113), Expect = 2e-05
Identities = 15/41 (36%), Positives = 15/41 (36%), Gaps = 6/41 (14%)
Query: 555 PTGPKG--GPPPPPPPPGGMGPPPPP----MPGMPGPPPPP 589
P GP G GPP P G GP PG G P
Sbjct: 678 PPGPAGPAGPPGPIGNVGAPGPKGARGSAGPPGATGFPGAA 718
Score = 47.0 bits (112), Expect = 3e-05
Identities = 13/38 (34%), Positives = 14/38 (36%), Gaps = 3/38 (7%)
Query: 555 PTGPKG--GPPPPPPPPGGMGPPPPP-MPGMPGPPPPP 589
GP G G P P G G P G+PG P
Sbjct: 471 EQGPAGSPGFQGLPGPAGPPGEAGKPGEQGVPGDLGAP 508
Score = 47.0 bits (112), Expect = 3e-05
Identities = 11/40 (27%), Positives = 11/40 (27%), Gaps = 3/40 (7%)
Query: 555 PTGPKGGPPPP--PPPPGGMGPPPPP-MPGMPGPPPPPMP 591
P G G G GP P G GP P
Sbjct: 441 PPGAVGPAGKDGEAGAQGPPGPAGPAGERGEQGPAGSPGF 480
Score = 47.0 bits (112), Expect = 3e-05
Identities = 14/41 (34%), Positives = 15/41 (36%), Gaps = 6/41 (14%)
Query: 555 PTGPKG--GPPPPPPPPGGMGPP----PPPMPGMPGPPPPP 589
GP G GP PP PG +G P G GP
Sbjct: 168 AAGPPGPTGPTGPPGFPGAVGAKGEAGPEGARGSEGPQGVR 208
Score = 47.0 bits (112), Expect = 3e-05
Identities = 13/40 (32%), Positives = 15/40 (37%), Gaps = 3/40 (7%)
Query: 555 PTGPKG--GPPPPPPPPGGMGPP-PPPMPGMPGPPPPPMP 591
G G G P G G P + G+ GP PP P
Sbjct: 573 AAGLPGPKGDRGDAGPKGADGAPGKDGVRGLTGPIGPPGP 612
Score = 47.0 bits (112), Expect = 3e-05
Identities = 20/44 (45%), Positives = 20/44 (45%), Gaps = 9/44 (20%)
Query: 555 PTGPKG--GPPPPPPPPGGMGPPPPP-------MPGMPGPPPPP 589
P GP G GPP PP P G G P PG GPP PP
Sbjct: 723 PPGPSGNAGPPGPPGPAGKEGSKGPRGETGPAGRPGEVGPPGPP 766
Score = 47.0 bits (112), Expect = 3e-05
Identities = 13/38 (34%), Positives = 13/38 (34%), Gaps = 3/38 (7%)
Query: 555 PTGPKG--GPPPPPPPPGGMGPPPPP-MPGMPGPPPPP 589
GP G G P G G P PG PG P
Sbjct: 219 AAGPAGNPGADGQPGAKGANGAPGIAGAPGFPGARGPS 256
Score = 47.0 bits (112), Expect = 3e-05
Identities = 20/40 (50%), Positives = 22/40 (55%), Gaps = 3/40 (7%)
Query: 555 PTGPKG--GPPPPPPPPGGMGPP-PPPMPGMPGPPPPPMP 591
P+GP+G GPP P P G GPP P PG GP P P
Sbjct: 21 PSGPRGLPGPPGAPGPQGFQGPPGEPGEPGASGPMGPRGP 60
Score = 47.0 bits (112), Expect = 3e-05
Identities = 15/38 (39%), Positives = 15/38 (39%), Gaps = 3/38 (7%)
Query: 555 PTGPKG--GPPPPPPPPGGMGPPPPP-MPGMPGPPPPP 589
G KG GP P P G G P PG PGP
Sbjct: 615 APGDKGEAGPSGPAGPTGARGAPGDRGEPGPPGPAGFA 652
Score = 47.0 bits (112), Expect = 3e-05
Identities = 11/40 (27%), Positives = 11/40 (27%), Gaps = 3/40 (7%)
Query: 555 PTGPKG--GPPPPPPPPGGMGPPPPP-MPGMPGPPPPPMP 591
G G G P PG G P G G P
Sbjct: 552 APGAPGSQGAPGLQGMPGERGAAGLPGPKGDRGDAGPKGA 591
Score = 47.0 bits (112), Expect = 3e-05
Identities = 15/38 (39%), Positives = 16/38 (42%), Gaps = 3/38 (7%)
Query: 555 PTGPKG--GPPPPPPPPGGMGPPPPP-MPGMPGPPPPP 589
G KG G P PG +GPP PP G G P
Sbjct: 741 KEGSKGPRGETGPAGRPGEVGPPGPPGPAGEKGAPGAD 778
Score = 46.6 bits (111), Expect = 3e-05
Identities = 16/38 (42%), Positives = 16/38 (42%), Gaps = 3/38 (7%)
Query: 555 PTGPKG--GPPPPPPPPGGMGPP-PPPMPGMPGPPPPP 589
P GP G G P G GP P G PGPP P
Sbjct: 732 PPGPPGPAGKEGSKGPRGETGPAGRPGEVGPPGPPGPA 769
Score = 46.6 bits (111), Expect = 3e-05
Identities = 15/38 (39%), Positives = 15/38 (39%), Gaps = 3/38 (7%)
Query: 555 PTGPKG--GPPPPPPPPGGMGPPPPP-MPGMPGPPPPP 589
P GP G G P PG G P P PG G P
Sbjct: 462 PAGPAGERGEQGPAGSPGFQGLPGPAGPPGEAGKPGEQ 499
Score = 46.6 bits (111), Expect = 3e-05
Identities = 14/38 (36%), Positives = 14/38 (36%), Gaps = 3/38 (7%)
Query: 555 PTGPKG--GPPPPPPPPGGMGPPPPP-MPGMPGPPPPP 589
P GP G G P P G G PP G PG
Sbjct: 684 PAGPPGPIGNVGAPGPKGARGSAGPPGATGFPGAAGRV 721
Score = 46.6 bits (111), Expect = 4e-05
Identities = 13/38 (34%), Positives = 13/38 (34%), Gaps = 3/38 (7%)
Query: 555 PTGPKG--GPPPPPPPPGGMGPPPPP-MPGMPGPPPPP 589
G G G PP P G G P P PG G
Sbjct: 381 SPGSPGPDGKTGPPGPAGEDGRPGPAGPPGARGQAGVM 418
Score = 46.6 bits (111), Expect = 4e-05
Identities = 14/38 (36%), Positives = 14/38 (36%), Gaps = 3/38 (7%)
Query: 555 PTGPKG--GPPPPPPPPGGMGPP-PPPMPGMPGPPPPP 589
G G G G GPP P PG PGP P
Sbjct: 861 SPGRDGSPGAKGDRGETGPAGPPGAPGAPGAPGPVGPA 898
Score = 46.6 bits (111), Expect = 4e-05
Identities = 12/38 (31%), Positives = 13/38 (34%), Gaps = 3/38 (7%)
Query: 555 PTGPKG--GPPPPPPPPGGMGPPPPP-MPGMPGPPPPP 589
G G G P PPG G P G+PG
Sbjct: 69 DDGEAGKPGRPGERGPPGPQGARGLPGTAGLPGMKGHR 106
Score = 46.6 bits (111), Expect = 4e-05
Identities = 15/43 (34%), Positives = 16/43 (37%), Gaps = 6/43 (13%)
Query: 555 PTGPKG--GPPPPPPPPGGMGPPPPP----MPGMPGPPPPPMP 591
P GP G G P PG +G P P G PG P
Sbjct: 486 PAGPPGEAGKPGEQGVPGDLGAPGPSGARGERGFPGERGVEGP 528
Score = 46.3 bits (110), Expect = 4e-05
Identities = 10/38 (26%), Positives = 11/38 (28%), Gaps = 3/38 (7%)
Query: 555 PTGPKG--GPPPPPPPPGGMGPPPPP-MPGMPGPPPPP 589
G +G GP PG G P G G
Sbjct: 78 RPGERGPPGPQGARGLPGTAGLPGMKGHRGFSGLDGAK 115
Score = 46.3 bits (110), Expect = 5e-05
Identities = 12/38 (31%), Positives = 12/38 (31%), Gaps = 3/38 (7%)
Query: 555 PTGPKG--GPPPPPPPPGGMGPPPPP-MPGMPGPPPPP 589
G G GPP P G G P M G G
Sbjct: 75 KPGRPGERGPPGPQGARGLPGTAGLPGMKGHRGFSGLD 112
Score = 46.3 bits (110), Expect = 5e-05
Identities = 13/38 (34%), Positives = 13/38 (34%), Gaps = 3/38 (7%)
Query: 555 PTGPKG--GPPPPPPPPGGMGPP-PPPMPGMPGPPPPP 589
P G G GP PP G G P G G P
Sbjct: 396 PAGEDGRPGPAGPPGARGQAGVMGFPGPKGAAGEPGKA 433
Score = 46.3 bits (110), Expect = 5e-05
Identities = 10/38 (26%), Positives = 10/38 (26%), Gaps = 3/38 (7%)
Query: 555 PTGPKG--GPPPPPPPPGGMGPP-PPPMPGMPGPPPPP 589
G G G P G G G GP P
Sbjct: 90 ARGLPGTAGLPGMKGHRGFSGLDGAKGDAGPAGPKGEP 127
Score = 46.3 bits (110), Expect = 5e-05
Identities = 17/43 (39%), Positives = 18/43 (41%), Gaps = 7/43 (16%)
Query: 553 GIPTGPKG-----GPPPPPPPPGGMGPPPPP-MPGMPGPPPPP 589
GI G +G GPP PP PG GP G GPP
Sbjct: 944 GIK-GHRGFSGLQGPPGPPGSPGEQGPSGASGPAGPRGPPGSA 985
Score = 46.3 bits (110), Expect = 6e-05
Identities = 13/38 (34%), Positives = 13/38 (34%), Gaps = 3/38 (7%)
Query: 555 PTGPKG--GPPPPPPPPGGMGPP-PPPMPGMPGPPPPP 589
GP G GP PG GP P PG G
Sbjct: 759 EVGPPGPPGPAGEKGAPGADGPAGAPGTPGPQGIAGQR 796
Score = 45.9 bits (109), Expect = 6e-05
Identities = 13/38 (34%), Positives = 14/38 (36%), Gaps = 3/38 (7%)
Query: 555 PTGPKG--GPPPPPPPPGGMGPPPPP-MPGMPGPPPPP 589
GP G GPP PG G P + G GP
Sbjct: 312 EPGPSGLPGPPGERGGPGSRGFPGADGVAGPKGPAGER 349
Score = 45.9 bits (109), Expect = 6e-05
Identities = 14/40 (35%), Positives = 14/40 (35%), Gaps = 3/40 (7%)
Query: 555 PTGPKG--GPPPPPPPPGGMGPPPPP-MPGMPGPPPPPMP 591
P G G G PPG G PP PG G P
Sbjct: 708 PPGATGFPGAAGRVGPPGPSGNAGPPGPPGPAGKEGSKGP 747
Score = 45.9 bits (109), Expect = 6e-05
Identities = 13/38 (34%), Positives = 13/38 (34%), Gaps = 3/38 (7%)
Query: 555 PTGPKG--GPPPPPPPPGGMGPPPPPM-PGMPGPPPPP 589
G G G P PPG G P G GP P
Sbjct: 594 APGKDGVRGLTGPIGPPGPAGAPGDKGEAGPSGPAGPT 631
Score = 45.9 bits (109), Expect = 6e-05
Identities = 11/40 (27%), Positives = 11/40 (27%), Gaps = 3/40 (7%)
Query: 555 PTGPKG--GPPPPPPPPGGMGPP-PPPMPGMPGPPPPPMP 591
G G G PG GP P G G P
Sbjct: 795 QRGVVGLPGQRGERGFPGLPGPSGEPGKQGPSGASGERGP 834
Score = 45.9 bits (109), Expect = 6e-05
Identities = 14/38 (36%), Positives = 14/38 (36%), Gaps = 3/38 (7%)
Query: 555 PTGPKG--GPPPPPPPPGGMGPPPPP-MPGMPGPPPPP 589
GP G G P P G GP P PG G P
Sbjct: 954 LQGPPGPPGSPGEQGPSGASGPAGPRGPPGSAGSPGKD 991
Score = 45.9 bits (109), Expect = 6e-05
Identities = 14/38 (36%), Positives = 14/38 (36%), Gaps = 3/38 (7%)
Query: 555 PTGPKG--GPPPPPPPPGGMGPP-PPPMPGMPGPPPPP 589
GPKG G PP G G PG G PP
Sbjct: 696 APGPKGARGSAGPPGATGFPGAAGRVGPPGPSGNAGPP 733
Score = 45.9 bits (109), Expect = 6e-05
Identities = 15/38 (39%), Positives = 15/38 (39%), Gaps = 3/38 (7%)
Query: 555 PTGPKG--GPPPPPPPPGGMGPPPPP-MPGMPGPPPPP 589
TG KG GP PPG G G PGP P
Sbjct: 282 DTGAKGEPGPAGVQGPPGPAGEEGKRGARGEPGPSGLP 319
Score = 45.9 bits (109), Expect = 6e-05
Identities = 12/40 (30%), Positives = 12/40 (30%), Gaps = 3/40 (7%)
Query: 555 PTGPKG--GPPPPPPPPGGMGPP-PPPMPGMPGPPPPPMP 591
GP G G G GP PG G P P
Sbjct: 402 RPGPAGPPGARGQAGVMGFPGPKGAAGEPGKAGERGVPGP 441
Score = 45.9 bits (109), Expect = 7e-05
Identities = 14/38 (36%), Positives = 16/38 (42%), Gaps = 3/38 (7%)
Query: 555 PTGPKG--GPPPPPPPPGGMGPP-PPPMPGMPGPPPPP 589
P G +G GP G G P P +PG PG P
Sbjct: 291 PAGVQGPPGPAGEEGKRGARGEPGPSGLPGPPGERGGP 328
Score = 45.9 bits (109), Expect = 7e-05
Identities = 15/38 (39%), Positives = 16/38 (42%), Gaps = 3/38 (7%)
Query: 555 PTGPKG--GPPPPPPPPGGMGPP-PPPMPGMPGPPPPP 589
G +G G P P PG GP G PGP PP
Sbjct: 804 QRGERGFPGLPGPSGEPGKQGPSGASGERGPPGPMGPP 841
Score = 45.9 bits (109), Expect = 7e-05
Identities = 14/38 (36%), Positives = 14/38 (36%), Gaps = 3/38 (7%)
Query: 555 PTGPKG--GPPPPPPPPGGMGPP-PPPMPGMPGPPPPP 589
P GP G G P PG GP PG G P
Sbjct: 627 PAGPTGARGAPGDRGEPGPPGPAGFAGPPGADGQPGAK 664
Score = 45.5 bits (108), Expect = 8e-05
Identities = 13/38 (34%), Positives = 14/38 (36%), Gaps = 3/38 (7%)
Query: 555 PTGPKG--GPPPPPPPPGGMGPP-PPPMPGMPGPPPPP 589
P G G G G +GPP P PG G P
Sbjct: 588 PKGADGAPGKDGVRGLTGPIGPPGPAGAPGDKGEAGPS 625
Score = 45.5 bits (108), Expect = 8e-05
Identities = 15/41 (36%), Positives = 15/41 (36%), Gaps = 6/41 (14%)
Query: 555 PTGPKG--GPPPPPPPPGGMGPP----PPPMPGMPGPPPPP 589
TG G G PP P G GPP P G GP
Sbjct: 711 ATGFPGAAGRVGPPGPSGNAGPPGPPGPAGKEGSKGPRGET 751
Score = 45.5 bits (108), Expect = 8e-05
Identities = 10/40 (25%), Positives = 11/40 (27%), Gaps = 3/40 (7%)
Query: 555 PTGPKG--GPPPPPPPPGGMGPPPPPMP-GMPGPPPPPMP 591
G +G G PG G P G G P
Sbjct: 561 APGLQGMPGERGAAGLPGPKGDRGDAGPKGADGAPGKDGV 600
Score = 45.5 bits (108), Expect = 9e-05
Identities = 14/44 (31%), Positives = 14/44 (31%), Gaps = 9/44 (20%)
Query: 555 PTGPKG--GPPPPPPPPGGMGPP-------PPPMPGMPGPPPPP 589
G G G P PP P G GPP PG G
Sbjct: 633 ARGAPGDRGEPGPPGPAGFAGPPGADGQPGAKGEPGDAGAKGDA 676
Score = 45.1 bits (107), Expect = 1e-04
Identities = 17/38 (44%), Positives = 18/38 (47%), Gaps = 3/38 (7%)
Query: 555 PTGPKG--GPPPPPPPPGGMGPPPPP-MPGMPGPPPPP 589
P G +G GPP PG G PP G GPP PP
Sbjct: 699 PKGARGSAGPPGATGFPGAAGRVGPPGPSGNAGPPGPP 736
Score = 45.1 bits (107), Expect = 1e-04
Identities = 12/38 (31%), Positives = 12/38 (31%), Gaps = 3/38 (7%)
Query: 555 PTGPKG--GPPPPPPPPGGMGPP-PPPMPGMPGPPPPP 589
G G GPP PG G P PG G
Sbjct: 480 FQGLPGPAGPPGEAGKPGEQGVPGDLGAPGPSGARGER 517
Score = 45.1 bits (107), Expect = 1e-04
Identities = 13/40 (32%), Positives = 13/40 (32%), Gaps = 3/40 (7%)
Query: 555 PTGPKG--GPPPPPPPPGGMGPPPPP-MPGMPGPPPPPMP 591
G G G P P G G P P G PG P
Sbjct: 330 SRGFPGADGVAGPKGPAGERGSPGPAGPKGSPGEAGRPGE 369
Score = 45.1 bits (107), Expect = 1e-04
Identities = 12/38 (31%), Positives = 12/38 (31%), Gaps = 3/38 (7%)
Query: 555 PTGPKG--GPPPPPPPPGGMGPPPPPM-PGMPGPPPPP 589
G G GP PPG GP G G P
Sbjct: 717 AAGRVGPPGPSGNAGPPGPPGPAGKEGSKGPRGETGPA 754
Score = 44.7 bits (106), Expect = 1e-04
Identities = 14/44 (31%), Positives = 16/44 (36%), Gaps = 4/44 (9%)
Query: 551 AAGIPTGPKG--GPPPPPPPPGGMGPP-PPPMPGMPGPPPPPMP 591
G+P G +G G P P G GP PG G P
Sbjct: 564 LQGMP-GERGAAGLPGPKGDRGDAGPKGADGAPGKDGVRGLTGP 606
Score = 44.7 bits (106), Expect = 1e-04
Identities = 12/40 (30%), Positives = 12/40 (30%), Gaps = 3/40 (7%)
Query: 555 PTGPKG--GPPPPPPPPGGMGPPPPP-MPGMPGPPPPPMP 591
GP G G G GP P PG G P
Sbjct: 294 VQGPPGPAGEEGKRGARGEPGPSGLPGPPGERGGPGSRGF 333
Score = 44.7 bits (106), Expect = 1e-04
Identities = 17/42 (40%), Positives = 19/42 (45%), Gaps = 4/42 (9%)
Query: 551 AAGIPTGPKG--GPPPPPPPPGGMGPPPPP-MPGMPGPPPPP 589
AAG+P GPKG G P G G + G GPP P
Sbjct: 573 AAGLP-GPKGDRGDAGPKGADGAPGKDGVRGLTGPIGPPGPA 613
Score = 44.7 bits (106), Expect = 2e-04
Identities = 12/41 (29%), Positives = 12/41 (29%), Gaps = 6/41 (14%)
Query: 555 PTGPKG--GPPPPPPPPGGMGPPPPP----MPGMPGPPPPP 589
P G G G P G G P G GP P
Sbjct: 222 PAGNPGADGQPGAKGANGAPGIAGAPGFPGARGPSGPEGPS 262
Score = 44.7 bits (106), Expect = 2e-04
Identities = 12/38 (31%), Positives = 12/38 (31%), Gaps = 3/38 (7%)
Query: 555 PTGPKG--GPPPPPPPPGGMGPPPPP-MPGMPGPPPPP 589
G G G PPG G P G PGP
Sbjct: 693 NVGAPGPKGARGSAGPPGATGFPGAAGRVGPPGPSGNA 730
Score = 44.7 bits (106), Expect = 2e-04
Identities = 15/44 (34%), Positives = 15/44 (34%), Gaps = 9/44 (20%)
Query: 555 PTGPKG--GPPPPPPPPGGMGPP-------PPPMPGMPGPPPPP 589
G G G P PG G PP PG PG P P
Sbjct: 852 REGAPGAEGSPGRDGSPGAKGDRGETGPAGPPGAPGAPGAPGPV 895
Score = 44.3 bits (105), Expect = 2e-04
Identities = 12/38 (31%), Positives = 12/38 (31%), Gaps = 3/38 (7%)
Query: 555 PTGPKG--GPPPPPPPPGGMGPPPPP-MPGMPGPPPPP 589
G G G P G G P P G PGP
Sbjct: 363 EAGRPGEAGLPGAKGLTGSPGSPGPDGKTGPPGPAGED 400
Score = 44.3 bits (105), Expect = 2e-04
Identities = 18/38 (47%), Positives = 18/38 (47%), Gaps = 3/38 (7%)
Query: 555 PTGPKG--GPPPPPPPPGGMGPPPPP-MPGMPGPPPPP 589
G G GP PP P G G P PG PGPP PP
Sbjct: 990 KDGLNGLPGPIGPPGPRGRTGDAGPAGPPGPPGPPGPP 1027
Score = 44.3 bits (105), Expect = 2e-04
Identities = 14/38 (36%), Positives = 14/38 (36%), Gaps = 3/38 (7%)
Query: 555 PTGPKG--GPPPPPPPPGGMGPPPPP-MPGMPGPPPPP 589
P GP G G P G G P PG PGP
Sbjct: 735 PPGPAGKEGSKGPRGETGPAGRPGEVGPPGPPGPAGEK 772
Score = 44.3 bits (105), Expect = 2e-04
Identities = 11/38 (28%), Positives = 11/38 (28%), Gaps = 3/38 (7%)
Query: 555 PTGPKG--GPPPPPPPPGGMGPP-PPPMPGMPGPPPPP 589
P G G G PG G P PG G
Sbjct: 840 PPGLAGPPGESGREGAPGAEGSPGRDGSPGAKGDRGET 877
Score = 43.9 bits (104), Expect = 2e-04
Identities = 14/42 (33%), Positives = 14/42 (33%), Gaps = 4/42 (9%)
Query: 555 PTGPKG--GPPPPPPPPGGMGPPPPPMPGMPGPPPPPMPEMY 594
P GP G GPP PP PP G P Y
Sbjct: 1014 PAGPPGPPGPPGPPGPPSGGYDLSF--LPQPPQQKAHDKGRY 1053
Score = 43.6 bits (103), Expect = 4e-04
Identities = 13/36 (36%), Positives = 14/36 (38%), Gaps = 3/36 (8%)
Query: 557 GPKG--GPPPPPPPPGGMGPPPPP-MPGMPGPPPPP 589
G PG MGP P +PG PG P P
Sbjct: 2 MSYGYDEKSTGISVPGPMGPSGPRGLPGPPGAPGPQ 37
Score = 43.6 bits (103), Expect = 4e-04
Identities = 11/38 (28%), Positives = 12/38 (31%), Gaps = 3/38 (7%)
Query: 555 PTGPKG--GPPPPPPPPGGMGPPPPP-MPGMPGPPPPP 589
G +G G G GPP P G G P
Sbjct: 939 EEGDRGIKGHRGFSGLQGPPGPPGSPGEQGPSGASGPA 976
Score = 43.2 bits (102), Expect = 5e-04
Identities = 16/41 (39%), Positives = 17/41 (41%), Gaps = 3/41 (7%)
Query: 555 PTGPKG--GPPPPPPPPGGMGPPPPP-MPGMPGPPPPPMPE 592
GPKG G P P G G P G+ GPP P E
Sbjct: 264 APGPKGNSGEPGAPGNKGDTGAKGEPGPAGVQGPPGPAGEE 304
Score = 42.8 bits (101), Expect = 5e-04
Identities = 12/37 (32%), Positives = 13/37 (35%), Gaps = 4/37 (10%)
Query: 555 PTGPKG--GPPPPPPPPGGMGPPPPPMPGMPGPPPPP 589
G +G G P G G P P G PG P
Sbjct: 792 IAGQRGVVGLPGQRGERGFPGLPGPS--GEPGKQGPS 826
Score = 40.9 bits (96), Expect = 0.002
Identities = 10/38 (26%), Positives = 10/38 (26%), Gaps = 3/38 (7%)
Query: 555 PTGPKG--GPPPPPPPPGGMGPPPPP-MPGMPGPPPPP 589
G G G PG G PP G G
Sbjct: 273 EPGAPGNKGDTGAKGEPGPAGVQGPPGPAGEEGKRGAR 310
Score = 40.5 bits (95), Expect = 0.003
Identities = 13/38 (34%), Positives = 13/38 (34%), Gaps = 3/38 (7%)
Query: 555 PTGPKG--GPPPPPPPPGGMGPP-PPPMPGMPGPPPPP 589
G G G P P G G P P G PG P
Sbjct: 243 IAGAPGFPGARGPSGPEGPSGAPGPKGNSGEPGAPGNK 280
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25,
CFIM68, CPSF5, CPSF6, CPSF, 3' END processing,
processing, cleavage factor; 2.90A {Homo sapiens} PDB:
3q2t_C
Length = 229
Score = 50.5 bits (120), Expect = 7e-07
Identities = 17/47 (36%), Positives = 19/47 (40%)
Query: 552 AGIPTGPKGGPPPPPPPPGGMGPPPPPMPGMPGPPPPPMPEMYTDCH 598
A P G +G P PGG P P PG P PP P + H
Sbjct: 183 AAFPQGGRGRGRFPGAVPGGDRFPGPAGPGGPPPPFPAGQTHHHHHH 229
Score = 43.6 bits (102), Expect = 1e-04
Identities = 18/70 (25%), Positives = 18/70 (25%), Gaps = 2/70 (2%)
Query: 524 QAQKTLEDLSSGRPVEKNRLDEVKAQVAAGIPTGPKGGPPPPPPPPGGMGPPPPPMPGMP 583
Q E S E KA G G P PG
Sbjct: 150 QFLSQFEMQSRKTTQSGQMSGEGKAGPPGGSSRAAFPQGGRGRGRFPGAVPGGDRFPGPA 209
Query: 584 GP--PPPPMP 591
GP PPPP P
Sbjct: 210 GPGGPPPPFP 219
Score = 42.8 bits (100), Expect = 2e-04
Identities = 13/47 (27%), Positives = 14/47 (29%), Gaps = 1/47 (2%)
Query: 548 AQVAAGIPTGPKGGPPPPPPPPG-GMGPPPPPMPGMPGPPPPPMPEM 593
G P G P G G G P +PG P P P
Sbjct: 167 QMSGEGKAGPPGGSSRAAFPQGGRGRGRFPGAVPGGDRFPGPAGPGG 213
Score = 40.5 bits (94), Expect = 0.001
Identities = 15/51 (29%), Positives = 18/51 (35%)
Query: 533 SSGRPVEKNRLDEVKAQVAAGIPTGPKGGPPPPPPPPGGMGPPPPPMPGMP 583
+G P +R + G G G P P G GPPPP G
Sbjct: 173 KAGPPGGSSRAAFPQGGRGRGRFPGAVPGGDRFPGPAGPGGPPPPFPAGQT 223
Score = 35.5 bits (81), Expect = 0.052
Identities = 10/39 (25%), Positives = 10/39 (25%), Gaps = 1/39 (2%)
Query: 549 QVAAGIPTGPKGGPPPPPPPPGGMGPPPPPMPGMPGPPP 587
Q G P P P PPP P G
Sbjct: 187 QGGRGRGRFPGAVPGGDRFPGPAGPGGPPP-PFPAGQTH 224
>3pod_A MBL collagen-like peptide; collagen peptide, complement proteins,
lectin pathway of COM MAsp-1 CUB1 and CUB2 domains,
bloodstream, unknown function; 1.50A {Synthetic}
Length = 26
Score = 45.2 bits (107), Expect = 7e-07
Identities = 18/26 (69%), Positives = 19/26 (73%), Gaps = 2/26 (7%)
Query: 561 GPPPPPPPPGGMGPPPPPMPGMPGPP 586
GPP PP PPG +GPP PP P PGPP
Sbjct: 2 GPPGPPGPPGKLGPPGPPGP--PGPP 25
Score = 30.9 bits (70), Expect = 0.093
Identities = 15/26 (57%), Positives = 15/26 (57%), Gaps = 7/26 (26%)
Query: 568 PPGGMGPPPPP----MPGMPGPPPPP 589
PPG PP PP PG PGPP PP
Sbjct: 3 PPG---PPGPPGKLGPPGPPGPPGPP 25
Score = 29.8 bits (67), Expect = 0.22
Identities = 13/20 (65%), Positives = 13/20 (65%), Gaps = 1/20 (5%)
Query: 573 GPPPPP-MPGMPGPPPPPMP 591
GPP PP PG GPP PP P
Sbjct: 2 GPPGPPGPPGKLGPPGPPGP 21
>3pon_A MBL collagen-like peptide; collagen peptide, MBL collagen-like
region, complement prote lectin pathway of complement;
1.50A {Synthetic} PDB: 3pob_B
Length = 29
Score = 45.2 bits (107), Expect = 8e-07
Identities = 20/30 (66%), Positives = 21/30 (70%), Gaps = 3/30 (10%)
Query: 557 GPKGGPPPPPPPPGGMGPPPPPMPGMPGPP 586
GP G PP PP PPG +GPP PP P PGPP
Sbjct: 2 GPPG-PPGPPGPPGKLGPPGPPGP--PGPP 28
Score = 40.6 bits (95), Expect = 3e-05
Identities = 18/29 (62%), Positives = 18/29 (62%), Gaps = 2/29 (6%)
Query: 561 GPPPPPPPPGGMGPPPPPMPGMPGPPPPP 589
GPP PP PPG G PP P PGPP PP
Sbjct: 2 GPPGPPGPPGPPGKLGPPGP--PGPPGPP 28
>2kpy_A Major pollen allergen ART V 1; defensin-like, poly-proline; NMR
{Artemisia vulgaris}
Length = 108
Score = 47.5 bits (112), Expect = 8e-07
Identities = 17/35 (48%), Positives = 17/35 (48%), Gaps = 2/35 (5%)
Query: 555 PTGPKGGPPPPPPPPGGMGPPPPPMPGMPGPPPPP 589
P G PP PPP G P PP G G PPPP
Sbjct: 57 PPGATPAPPGAAPPPAAGGSPSPPADG--GSPPPP 89
Score = 43.3 bits (101), Expect = 2e-05
Identities = 18/49 (36%), Positives = 18/49 (36%), Gaps = 10/49 (20%)
Query: 551 AAGIPTGPKGGPPP-----PPPPPGGMGPPPP-----PMPGMPGPPPPP 589
P P PPP P PP G PPPP P PPPP
Sbjct: 58 PGATPAPPGAAPPPAAGGSPSPPADGGSPPPPADGGSPPVDGGSPPPPS 106
Score = 35.6 bits (81), Expect = 0.014
Identities = 11/30 (36%), Positives = 11/30 (36%), Gaps = 2/30 (6%)
Query: 565 PPPPPGGMGPPP--PPMPGMPGPPPPPMPE 592
PPG PP P P G P PP
Sbjct: 54 SKSPPGATPAPPGAAPPPAAGGSPSPPADG 83
Score = 34.0 bits (77), Expect = 0.040
Identities = 16/39 (41%), Positives = 16/39 (41%), Gaps = 10/39 (25%)
Query: 559 KGGPPPP---PPPPGGMGPPPPPMPGMPGPP-----PPP 589
PP P PPG PPP G P PP PPP
Sbjct: 52 DCSKSPPGATPAPPGA--APPPAAGGSPSPPADGGSPPP 88
>3a0m_A Collagen-like peptide; triple-helix, model peptide, twinned
crystal, STRU protein; 1.02A {Synthetic}
Length = 27
Score = 43.7 bits (103), Expect = 3e-06
Identities = 18/26 (69%), Positives = 19/26 (73%), Gaps = 2/26 (7%)
Query: 561 GPPPPPPPPGGMGPPPPPMPGMPGPP 586
GPP PP PPG +GPP PP P PGPP
Sbjct: 3 GPPGPPGPPGPVGPPGPPGP--PGPP 26
Score = 41.4 bits (97), Expect = 2e-05
Identities = 18/28 (64%), Positives = 18/28 (64%), Gaps = 2/28 (7%)
Query: 562 PPPPPPPPGGMGPPPPPMPGMPGPPPPP 589
PP PP PPG GP PP P PGPP PP
Sbjct: 1 PPGPPGPPGPPGPVGPPGP--PGPPGPP 26
Score = 38.7 bits (90), Expect = 2e-04
Identities = 17/25 (68%), Positives = 17/25 (68%), Gaps = 1/25 (4%)
Query: 568 PPGGMGPPPPPMP-GMPGPPPPPMP 591
PPG GPP PP P G PGPP PP P
Sbjct: 1 PPGPPGPPGPPGPVGPPGPPGPPGP 25
Score = 31.0 bits (70), Expect = 0.074
Identities = 14/23 (60%), Positives = 14/23 (60%), Gaps = 2/23 (8%)
Query: 555 PTGPKGGPPP--PPPPPGGMGPP 575
P GP G P P PP PPG GPP
Sbjct: 4 PPGPPGPPGPVGPPGPPGPPGPP 26
>3a1h_A Collagen-like peptide; collagen helix, HOST-guest peptide, twinned
crystal, structu protein; 1.08A {Synthetic}
Length = 27
Score = 43.0 bits (101), Expect = 5e-06
Identities = 18/26 (69%), Positives = 18/26 (69%), Gaps = 2/26 (7%)
Query: 561 GPPPPPPPPGGMGPPPPPMPGMPGPP 586
GPP PP PPG GPP PP P PGPP
Sbjct: 3 GPPGPPGPPGPTGPPGPPGP--PGPP 26
Score = 41.8 bits (98), Expect = 1e-05
Identities = 18/28 (64%), Positives = 18/28 (64%), Gaps = 2/28 (7%)
Query: 562 PPPPPPPPGGMGPPPPPMPGMPGPPPPP 589
PP PP PPG GP PP P PGPP PP
Sbjct: 1 PPGPPGPPGPPGPTGPPGP--PGPPGPP 26
Score = 38.7 bits (90), Expect = 2e-04
Identities = 17/27 (62%), Positives = 17/27 (62%), Gaps = 2/27 (7%)
Query: 565 PPPPPGGMGPPPPPMPGMPGPPPPPMP 591
PP PPG GPP P P PGPP PP P
Sbjct: 1 PPGPPGPPGPPGPTGP--PGPPGPPGP 25
Score = 31.0 bits (70), Expect = 0.079
Identities = 14/23 (60%), Positives = 14/23 (60%), Gaps = 2/23 (8%)
Query: 555 PTGPKGGPPP--PPPPPGGMGPP 575
P GP G P P PP PPG GPP
Sbjct: 4 PPGPPGPPGPTGPPGPPGPPGPP 26
>1dx0_A Prion protein; brain, repeat; NMR {Bos taurus} SCOP: d.6.1.1 PDB:
1dx1_A 1qlx_A 1qlz_A
Length = 219
Score = 47.5 bits (112), Expect = 5e-06
Identities = 12/37 (32%), Positives = 12/37 (32%)
Query: 555 PTGPKGGPPPPPPPPGGMGPPPPPMPGMPGPPPPPMP 591
G GG PP GG G P G P P
Sbjct: 21 GQGSPGGNRYPPQGGGGWGQPHGGGWGQPHGGGWGQP 57
Score = 45.2 bits (106), Expect = 3e-05
Identities = 11/43 (25%), Positives = 11/43 (25%), Gaps = 6/43 (13%)
Query: 553 GIPTGPK--GGPPPP----PPPPGGMGPPPPPMPGMPGPPPPP 589
G PK GG P G PP G P
Sbjct: 1 GSKKRPKPGGGWNTGGSRYPGQGSPGGNRYPPQGGGGWGQPHG 43
Score = 45.2 bits (106), Expect = 3e-05
Identities = 10/45 (22%), Positives = 11/45 (24%), Gaps = 4/45 (8%)
Query: 549 QVAAGIPTGPKGGPPPPPPPPGGMGPPPPP----MPGMPGPPPPP 589
+ P G PP GG P P G P
Sbjct: 14 TGGSRYPGQGSPGGNRYPPQGGGGWGQPHGGGWGQPHGGGWGQPH 58
Score = 44.8 bits (105), Expect = 4e-05
Identities = 9/37 (24%), Positives = 9/37 (24%), Gaps = 2/37 (5%)
Query: 557 GPKGGPPPP--PPPPGGMGPPPPPMPGMPGPPPPPMP 591
G K P P G P G PP
Sbjct: 1 GSKKRPKPGGGWNTGGSRYPGQGSPGGNRYPPQGGGG 37
Score = 44.1 bits (103), Expect = 9e-05
Identities = 12/47 (25%), Positives = 12/47 (25%), Gaps = 6/47 (12%)
Query: 551 AAGIPTGPKGGPPPPP------PPPGGMGPPPPPMPGMPGPPPPPMP 591
G TG P PP GG G P G P
Sbjct: 9 GGGWNTGGSRYPGQGSPGGNRYPPQGGGGWGQPHGGGWGQPHGGGWG 55
Score = 43.7 bits (102), Expect = 9e-05
Identities = 11/42 (26%), Positives = 12/42 (28%), Gaps = 4/42 (9%)
Query: 552 AGIPTGPKGGPPPPPPPPGGMGPPP----PPMPGMPGPPPPP 589
G P+GG P GG G P G P
Sbjct: 26 GGNRYPPQGGGGWGQPHGGGWGQPHGGGWGQPHGGGWGQPHG 67
Score = 42.5 bits (99), Expect = 2e-04
Identities = 9/33 (27%), Positives = 9/33 (27%)
Query: 557 GPKGGPPPPPPPPGGMGPPPPPMPGMPGPPPPP 589
G G P GG G P G P
Sbjct: 47 GQPHGGGWGQPHGGGWGQPHGGGWGQPHGGGGW 79
Score = 42.1 bits (98), Expect = 4e-04
Identities = 10/45 (22%), Positives = 10/45 (22%), Gaps = 6/45 (13%)
Query: 551 AAGIPTGPKGGPPPPPPPPGGMGPPP------PPMPGMPGPPPPP 589
G P P G PP P G G P
Sbjct: 8 PGGGWNTGGSRYPGQGSPGGNRYPPQGGGGWGQPHGGGWGQPHGG 52
Score = 41.8 bits (97), Expect = 5e-04
Identities = 8/43 (18%), Positives = 9/43 (20%)
Query: 551 AAGIPTGPKGGPPPPPPPPGGMGPPPPPMPGMPGPPPPPMPEM 593
G GG P G P P M +
Sbjct: 59 GGGWGQPHGGGWGQPHGGGGWGQGGTHGQWNKPSKPKTNMKHV 101
Score = 41.4 bits (96), Expect = 6e-04
Identities = 9/44 (20%), Positives = 9/44 (20%)
Query: 548 AQVAAGIPTGPKGGPPPPPPPPGGMGPPPPPMPGMPGPPPPPMP 591
Q G P GG P G P G
Sbjct: 39 GQPHGGGWGQPHGGGWGQPHGGGWGQPHGGGWGQPHGGGGWGQG 82
Score = 41.0 bits (95), Expect = 7e-04
Identities = 10/46 (21%), Positives = 11/46 (23%), Gaps = 4/46 (8%)
Query: 551 AAGIPTGPKGGPPPPPP----PPGGMGPPPPPMPGMPGPPPPPMPE 592
P GG P P G G P G P +
Sbjct: 27 GNRYPPQGGGGWGQPHGGGWGQPHGGGWGQPHGGGWGQPHGGGWGQ 72
Score = 41.0 bits (95), Expect = 8e-04
Identities = 11/40 (27%), Positives = 11/40 (27%)
Query: 552 AGIPTGPKGGPPPPPPPPGGMGPPPPPMPGMPGPPPPPMP 591
G G G P GG G P G P P
Sbjct: 34 GGGGWGQPHGGGWGQPHGGGWGQPHGGGWGQPHGGGWGQP 73
Score = 40.6 bits (94), Expect = 0.001
Identities = 11/47 (23%), Positives = 11/47 (23%), Gaps = 6/47 (12%)
Query: 548 AQVAAGIPTGPKGGPPPP-----PPPPGGMGPPPPPMPGMPGPPPPP 589
Q G GG P P GG P G P
Sbjct: 32 PQGGGGWGQPHGGGWGQPHGGGWGQPHGGGWGQPHG-GGWGQPHGGG 77
Score = 40.6 bits (94), Expect = 0.001
Identities = 9/43 (20%), Positives = 10/43 (23%), Gaps = 4/43 (9%)
Query: 553 GIPTGPKGGPPPPP----PPPGGMGPPPPPMPGMPGPPPPPMP 591
G + PP P G G P G P
Sbjct: 21 GQGSPGGNRYPPQGGGGWGQPHGGGWGQPHGGGWGQPHGGGWG 63
Score = 40.2 bits (93), Expect = 0.001
Identities = 10/41 (24%), Positives = 10/41 (24%)
Query: 549 QVAAGIPTGPKGGPPPPPPPPGGMGPPPPPMPGMPGPPPPP 589
Q G P GG P G P G G
Sbjct: 48 QPHGGGWGQPHGGGWGQPHGGGWGQPHGGGGWGQGGTHGQW 88
Score = 39.4 bits (91), Expect = 0.002
Identities = 10/49 (20%), Positives = 10/49 (20%), Gaps = 6/49 (12%)
Query: 553 GIPTGPKGGPPPPPPPPGGMGP------PPPPMPGMPGPPPPPMPEMYT 595
G P G G P G G P P M
Sbjct: 63 GQPHGGGWGQPHGGGGWGQGGTHGQWNKPSKPKTNMKHVAGAAAAGAVV 111
Score = 39.4 bits (91), Expect = 0.003
Identities = 6/41 (14%), Positives = 6/41 (14%)
Query: 551 AAGIPTGPKGGPPPPPPPPGGMGPPPPPMPGMPGPPPPPMP 591
G GG P G P
Sbjct: 51 GGGWGQPHGGGWGQPHGGGWGQPHGGGGWGQGGTHGQWNKP 91
Score = 39.1 bits (90), Expect = 0.003
Identities = 11/41 (26%), Positives = 11/41 (26%), Gaps = 2/41 (4%)
Query: 555 PTGPKGGPPPP--PPPPGGMGPPPPPMPGMPGPPPPPMPEM 593
G G P P GG G G P P M
Sbjct: 58 HGGGWGQPHGGGWGQPHGGGGWGQGGTHGQWNKPSKPKTNM 98
Score = 32.1 bits (72), Expect = 0.54
Identities = 5/39 (12%), Positives = 5/39 (12%)
Query: 551 AAGIPTGPKGGPPPPPPPPGGMGPPPPPMPGMPGPPPPP 589
G G G P P
Sbjct: 76 GGGWGQGGTHGQWNKPSKPKTNMKHVAGAAAAGAVVGGL 114
Score = 31.4 bits (70), Expect = 0.96
Identities = 4/46 (8%), Positives = 6/46 (13%), Gaps = 6/46 (13%)
Query: 555 PTGPKGGPPPPP------PPPGGMGPPPPPMPGMPGPPPPPMPEMY 594
T + P P G +
Sbjct: 83 GTHGQWNKPSKPKTNMKHVAGAAAAGAVVGGLGGYMLGSAMSRPLI 128
>4dmu_A Collagen III derived triple-helical peptide; dinucleotide binding
fold, collagen binding, platelet activa hemostasis,
plasma, structural protein-protein binding COMP; 2.80A
{Synthetic}
Length = 87
Score = 44.2 bits (105), Expect = 6e-06
Identities = 21/41 (51%), Positives = 21/41 (51%), Gaps = 6/41 (14%)
Query: 551 AAGIPTGPKG----GPPPPPPPPGGMGPP-PPPMPGMPGPP 586
G P GP G GPP PP PPG G P PG PGPP
Sbjct: 47 VMGFP-GPPGPPXXGPPGPPGPPGPRGQPGVMGFPGPPGPP 86
Score = 44.2 bits (105), Expect = 6e-06
Identities = 20/37 (54%), Positives = 20/37 (54%), Gaps = 2/37 (5%)
Query: 555 PTGPKG--GPPPPPPPPGGMGPPPPPMPGMPGPPPPP 589
P GP G GP P G GPP PP G PGPP PP
Sbjct: 3 PPGPPGPPGPRGQPGVMGFPGPPGPPXXGPPGPPGPP 39
Score = 43.5 bits (103), Expect = 1e-05
Identities = 17/39 (43%), Positives = 18/39 (46%), Gaps = 2/39 (5%)
Query: 555 PTGPKG--GPPPPPPPPGGMGPPPPPMPGMPGPPPPPMP 591
P GP+G G P PPG PP PG PGP P
Sbjct: 9 PPGPRGQPGVMGFPGPPGPPXXGPPGPPGPPGPRGQPGV 47
Score = 40.8 bits (96), Expect = 1e-04
Identities = 20/37 (54%), Positives = 20/37 (54%), Gaps = 2/37 (5%)
Query: 555 PTGPKG--GPPPPPPPPGGMGPPPPPMPGMPGPPPPP 589
P GP G GP P G GPP PP G PGPP PP
Sbjct: 32 PPGPPGPPGPRGQPGVMGFPGPPGPPXXGPPGPPGPP 68
Score = 38.5 bits (90), Expect = 7e-04
Identities = 17/40 (42%), Positives = 18/40 (45%), Gaps = 5/40 (12%)
Query: 555 PTGPKGGPPPP----PPPPGGMGPPPPP-MPGMPGPPPPP 589
P GP+G P PP P GPP PP PG G P
Sbjct: 38 PPGPRGQPGVMGFPGPPGPPXXGPPGPPGPPGPRGQPGVM 77
Score = 36.5 bits (85), Expect = 0.004
Identities = 17/32 (53%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
Query: 561 GPPPPPPPPGGMGPP-PPPMPGMPGPPPPPMP 591
GPP PP PPG G P PG PGPP P
Sbjct: 2 GPPGPPGPPGPRGQPGVMGFPGPPGPPXXGPP 33
Score = 36.5 bits (85), Expect = 0.004
Identities = 20/44 (45%), Positives = 20/44 (45%), Gaps = 13/44 (29%)
Query: 553 GIPTGPKG-------GPPPPPPPPGGMGPPPPPMPGMPGPPPPP 589
G P GP G GPP PP P G G G PGPP PP
Sbjct: 20 GFP-GPPGPPXXGPPGPPGPPGPRGQPGV-----MGFPGPPGPP 57
>3adm_A Collagen-like peptide; triple helix, model peptide, structural
protein; HET: HYP; 1.18A {Synthetic}
Length = 27
Score = 42.6 bits (100), Expect = 7e-06
Identities = 18/26 (69%), Positives = 18/26 (69%), Gaps = 2/26 (7%)
Query: 561 GPPPPPPPPGGMGPPPPPMPGMPGPP 586
GPP PP PPG GPP PP P PGPP
Sbjct: 3 GPPGPPGPPGPSGPPGPPGP--PGPP 26
Score = 41.8 bits (98), Expect = 1e-05
Identities = 18/28 (64%), Positives = 18/28 (64%), Gaps = 2/28 (7%)
Query: 562 PPPPPPPPGGMGPPPPPMPGMPGPPPPP 589
PP PP PPG GP PP P PGPP PP
Sbjct: 1 PPGPPGPPGPPGPSGPPGP--PGPPGPP 26
Score = 38.7 bits (90), Expect = 2e-04
Identities = 17/27 (62%), Positives = 17/27 (62%), Gaps = 2/27 (7%)
Query: 565 PPPPPGGMGPPPPPMPGMPGPPPPPMP 591
PP PPG GPP P P PGPP PP P
Sbjct: 1 PPGPPGPPGPPGPSGP--PGPPGPPGP 25
Score = 31.0 bits (70), Expect = 0.080
Identities = 14/23 (60%), Positives = 14/23 (60%), Gaps = 2/23 (8%)
Query: 555 PTGPKGGPPP--PPPPPGGMGPP 575
P GP G P P PP PPG GPP
Sbjct: 4 PPGPPGPPGPSGPPGPPGPPGPP 26
>1qsu_A Protein ((Pro-HYP-Gly)4- Glu-Lys-Gly(Pro-HYP- Gly)5); triple helix,
structural protein; 1.75A {Synthetic} SCOP: k.3.1.1
Length = 30
Score = 42.3 bits (99), Expect = 8e-06
Identities = 20/29 (68%), Positives = 20/29 (68%), Gaps = 2/29 (6%)
Query: 561 GPPPPPPPPGGMGPPPPPMPGMPGPPPPP 589
GPP PP PPG GPP P PG PGPP PP
Sbjct: 3 GPPGPPGPPGEKGPPGP--PGPPGPPGPP 29
Score = 33.5 bits (76), Expect = 0.010
Identities = 16/26 (61%), Positives = 16/26 (61%), Gaps = 1/26 (3%)
Query: 568 PPGGMGPP-PPPMPGMPGPPPPPMPE 592
PPG GPP PP G PGPP PP P
Sbjct: 1 PPGPPGPPGPPGEKGPPGPPGPPGPP 26
>3ah9_A Collagen-like peptide; triple helix, model peptide, structural
protein; 1.08A {Synthetic} PDB: 2cuo_A 2d3f_A 2d3h_A
3a19_A 1x1k_A 3ai6_A*
Length = 27
Score = 41.9 bits (98), Expect = 1e-05
Identities = 19/28 (67%), Positives = 19/28 (67%), Gaps = 2/28 (7%)
Query: 562 PPPPPPPPGGMGPPPPPMPGMPGPPPPP 589
PP PP PPG GPP P PG PGPP PP
Sbjct: 1 PPGPPGPPGPPGPPGP--PGPPGPPGPP 26
Score = 35.3 bits (81), Expect = 0.002
Identities = 16/27 (59%), Positives = 16/27 (59%), Gaps = 5/27 (18%)
Query: 565 PPPPPGGMGPPPPPMPGMPGPPPPPMP 591
PP PPG PP PG PGPP PP P
Sbjct: 1 PPGPPG-----PPGPPGPPGPPGPPGP 22
>3dmw_A Collagen alpha-1(III) chain; collagen III, cystine knot, triple
helix, glycine, MAD phasing, alternative splicing,
disease mutation; 2.30A {Synthetic}
Length = 42
Score = 42.0 bits (99), Expect = 1e-05
Identities = 18/34 (52%), Positives = 18/34 (52%), Gaps = 2/34 (5%)
Query: 557 GPKGGPPPPPPPPGGMGPP-PPPMPGMPGPPPPP 589
GP G PP P G G P PGMPGPP PP
Sbjct: 1 GPIG-PPGPRGNRGERGSEGSPGHPGMPGPPGPP 33
Score = 38.1 bits (89), Expect = 3e-04
Identities = 16/39 (41%), Positives = 16/39 (41%), Gaps = 4/39 (10%)
Query: 555 PTGPKG--GPPPPPPPPGGMGPPPPPMPGMPGPPPPPMP 591
P GP G G G G P PG PGPP P P
Sbjct: 2 PIGPPGPRGNRGERGSEGSPGHPGM--PGPPGPPGAPGP 38
>3abn_A Collagen-like peptide; collagen-helix, structural protein; HET:
HYP; 1.02A {Synthetic}
Length = 27
Score = 41.8 bits (98), Expect = 1e-05
Identities = 18/26 (69%), Positives = 18/26 (69%), Gaps = 2/26 (7%)
Query: 561 GPPPPPPPPGGMGPPPPPMPGMPGPP 586
GPP PP PPG GPP PP P PGPP
Sbjct: 3 GPPGPPGPPGPDGPPGPPGP--PGPP 26
Score = 41.4 bits (97), Expect = 2e-05
Identities = 18/28 (64%), Positives = 18/28 (64%), Gaps = 2/28 (7%)
Query: 562 PPPPPPPPGGMGPPPPPMPGMPGPPPPP 589
PP PP PPG GP PP P PGPP PP
Sbjct: 1 PPGPPGPPGPPGPDGPPGP--PGPPGPP 26
Score = 38.3 bits (89), Expect = 2e-04
Identities = 17/25 (68%), Positives = 17/25 (68%), Gaps = 1/25 (4%)
Query: 568 PPGGMGPPPPPMP-GMPGPPPPPMP 591
PPG GPP PP P G PGPP PP P
Sbjct: 1 PPGPPGPPGPPGPDGPPGPPGPPGP 25
Score = 31.0 bits (70), Expect = 0.091
Identities = 14/23 (60%), Positives = 14/23 (60%), Gaps = 2/23 (8%)
Query: 555 PTGPKGGPPP--PPPPPGGMGPP 575
P GP G P P PP PPG GPP
Sbjct: 4 PPGPPGPPGPDGPPGPPGPPGPP 26
>4auo_C Triple-helical collagen peptide; hydrolase-peptide complex; 3.00A
{Synthetic construct}
Length = 40
Score = 41.8 bits (98), Expect = 2e-05
Identities = 16/38 (42%), Positives = 17/38 (44%), Gaps = 3/38 (7%)
Query: 555 PTGPKG--GPPPPPPPPGGMGPPPPP-MPGMPGPPPPP 589
P GP G GP G +G P G PGPP PP
Sbjct: 2 PPGPPGPPGPQGLAGQRGIVGLPGQRGERGPPGPPGPP 39
Score = 39.8 bits (93), Expect = 8e-05
Identities = 13/32 (40%), Positives = 15/32 (46%), Gaps = 1/32 (3%)
Query: 561 GPPPPPPPPGGMGPP-PPPMPGMPGPPPPPMP 591
GPP PP PPG G + G+PG P
Sbjct: 1 GPPGPPGPPGPQGLAGQRGIVGLPGQRGERGP 32
Score = 33.3 bits (76), Expect = 0.019
Identities = 14/33 (42%), Positives = 15/33 (45%), Gaps = 3/33 (9%)
Query: 555 PTGPKG--GPPPPPPPPGGMGPPPPP-MPGMPG 584
P GP+G G PG G PP PG PG
Sbjct: 8 PPGPQGLAGQRGIVGLPGQRGERGPPGPPGPPG 40
>2pne_A 6.5 kDa glycine-rich antifreeze protein; chemical protein
synthesis, native chemical ligation; 0.98A {Synthetic}
PDB: 3boi_A 3bog_A* 3bog_C*
Length = 81
Score = 42.7 bits (101), Expect = 2e-05
Identities = 11/48 (22%), Positives = 14/48 (29%), Gaps = 8/48 (16%)
Query: 551 AAGIPTGPKG-----GPPPPPPPPGGMGPP--PPPMPGMPGPPPPPMP 591
+ G P G G G P GG+G G+ G
Sbjct: 22 SVGGP-GCDGGHGGNGGNGNPGCAGGVGGAGGASGGTGVGGRGGKGGS 68
Score = 38.5 bits (90), Expect = 6e-04
Identities = 10/37 (27%), Positives = 10/37 (27%), Gaps = 4/37 (10%)
Query: 552 AGIPTGPKG--GPPPPPPPPGGMGPPPPPMPGMPGPP 586
G G G G G P G PG P
Sbjct: 47 VGGAGGASGGTGVGGRGGKGGSGTPKGA--DGAPGAP 81
Score = 38.1 bits (89), Expect = 7e-04
Identities = 7/36 (19%), Positives = 7/36 (19%), Gaps = 1/36 (2%)
Query: 555 PTGPKGGPPPPPPPPGGMGPPPPP-MPGMPGPPPPP 589
G G G G G G P
Sbjct: 37 GNGNPGCAGGVGGAGGASGGTGVGGRGGKGGSGTPK 72
Score = 38.1 bits (89), Expect = 9e-04
Identities = 10/37 (27%), Positives = 10/37 (27%), Gaps = 2/37 (5%)
Query: 551 AAGIPTGPKGGPPPPPPPPGGMGPP-PPPMPGMPGPP 586
G P G GG GG G G P
Sbjct: 37 GNGNP-GCAGGVGGAGGASGGTGVGGRGGKGGSGTPK 72
>2f6a_E Collagen; CNA, mscramm, adhesion, ECM, cell adhesion/structural
protein complex; 3.29A {Staphylococcus aureus}
Length = 30
Score = 41.0 bits (96), Expect = 2e-05
Identities = 20/32 (62%), Positives = 20/32 (62%), Gaps = 3/32 (9%)
Query: 555 PTGPKGGPPPPPPPPGGMGPPPPPMPGMPGPP 586
P GP G PP PP P G GPP PP G PGPP
Sbjct: 2 PPGPPG-PPGPPGPRGRTGPPGPP--GPPGPP 30
Score = 40.6 bits (95), Expect = 3e-05
Identities = 18/29 (62%), Positives = 18/29 (62%), Gaps = 2/29 (6%)
Query: 561 GPPPPPPPPGGMGPPPPPMPGMPGPPPPP 589
GPP PP PPG G PP P PGPP PP
Sbjct: 4 GPPGPPGPPGPRGRTGPPGP--PGPPGPP 30
>2y5t_F C1; immune system, antibody, rheumatoid arthritis; 2.20A {Mus
musculus}
Length = 38
Score = 40.8 bits (95), Expect = 3e-05
Identities = 19/35 (54%), Positives = 19/35 (54%), Gaps = 3/35 (8%)
Query: 555 PTGPKGGPPPPPPPPGGMGPPPPPMPGMPGPPPPP 589
P GP G PP PP PPG G P G GPP PP
Sbjct: 2 PPGPPG-PPGPPGPPGARGLTGRP--GDAGPPGPP 33
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos
taurus} SCOP: i.9.1.1
Length = 390
Score = 45.2 bits (106), Expect = 6e-05
Identities = 16/43 (37%), Positives = 16/43 (37%), Gaps = 3/43 (6%)
Query: 553 GIPTGPKGGPPPP-PPPPGGMGPPPP--PMPGMPGPPPPPMPE 592
G P G P P PG G P P PG G P PE
Sbjct: 297 GRPEPGSAGTWNPGRPEPGSAGTWNPGRPEPGSAGTWNPGRPE 339
Score = 44.9 bits (105), Expect = 8e-05
Identities = 14/77 (18%), Positives = 22/77 (28%)
Query: 516 QEAEAKLVQAQKTLEDLSSGRPVEKNRLDEVKAQVAAGIPTGPKGGPPPPPPPPGGMGPP 575
+E +++L +A + L + + A G G P P G
Sbjct: 219 REFKSQLQEAPLEWKALLEMQQTKMVLETFGGDGHARGDSVSQGTGLAPGSPRKPGTSSI 278
Query: 576 PPPMPGMPGPPPPPMPE 592
PG GP
Sbjct: 279 GNVNPGSYGPGSSGTWN 295
Score = 44.1 bits (103), Expect = 2e-04
Identities = 14/39 (35%), Positives = 14/39 (35%), Gaps = 2/39 (5%)
Query: 556 TGPKGGPPPPPPPPGGMGPPPP--PMPGMPGPPPPPMPE 592
T G P PG G P P PG G P PE
Sbjct: 275 TSSIGNVNPGSYGPGSSGTWNPGRPEPGSAGTWNPGRPE 313
Score = 42.9 bits (100), Expect = 4e-04
Identities = 5/40 (12%), Positives = 5/40 (12%)
Query: 553 GIPTGPKGGPPPPPPPPGGMGPPPPPMPGMPGPPPPPMPE 592
G G P P P
Sbjct: 341 GSAGTWNPGRPEPGSAGTWNTGSSGSSSFRPDSSGHGNIR 380
Score = 42.9 bits (100), Expect = 4e-04
Identities = 15/40 (37%), Positives = 15/40 (37%), Gaps = 2/40 (5%)
Query: 555 PTGPKGGPPPPPPPPGGMGPPPP--PMPGMPGPPPPPMPE 592
G G P P PG G P P PG G P PE
Sbjct: 287 GPGSSGTWNPGRPEPGSAGTWNPGRPEPGSAGTWNPGRPE 326
Score = 42.9 bits (100), Expect = 4e-04
Identities = 12/44 (27%), Positives = 13/44 (29%), Gaps = 6/44 (13%)
Query: 555 PTGPKGGPPPPPPP----PGGMGPPPP--PMPGMPGPPPPPMPE 592
P P+ G P PG G P P PG G
Sbjct: 322 PGRPEPGSAGTWNPGRPEPGSAGTWNPGRPEPGSAGTWNTGSSG 365
Score = 42.5 bits (99), Expect = 5e-04
Identities = 7/39 (17%), Positives = 9/39 (23%)
Query: 555 PTGPKGGPPPPPPPPGGMGPPPPPMPGMPGPPPPPMPEM 593
P P+ G P G P P+
Sbjct: 348 PGRPEPGSAGTWNTGSSGSSSFRPDSSGHGNIRPSSPDW 386
Score = 42.5 bits (99), Expect = 5e-04
Identities = 15/38 (39%), Positives = 15/38 (39%), Gaps = 2/38 (5%)
Query: 557 GPKGGPPPPPPPPGGMGPPPP--PMPGMPGPPPPPMPE 592
G G P P PG G P P PG G P PE
Sbjct: 315 GSAGTWNPGRPEPGSAGTWNPGRPEPGSAGTWNPGRPE 352
Score = 42.5 bits (99), Expect = 5e-04
Identities = 7/36 (19%), Positives = 7/36 (19%)
Query: 553 GIPTGPKGGPPPPPPPPGGMGPPPPPMPGMPGPPPP 588
G P G P G P P
Sbjct: 349 GRPEPGSAGTWNTGSSGSSSFRPDSSGHGNIRPSSP 384
Score = 42.5 bits (99), Expect = 5e-04
Identities = 11/38 (28%), Positives = 11/38 (28%)
Query: 555 PTGPKGGPPPPPPPPGGMGPPPPPMPGMPGPPPPPMPE 592
G P P G P PG G P PE
Sbjct: 263 TGLAPGSPRKPGTSSIGNVNPGSYGPGSSGTWNPGRPE 300
Score = 41.0 bits (95), Expect = 0.002
Identities = 14/117 (11%), Positives = 35/117 (29%)
Query: 473 RSSRRFQLDVQPLVEHLAEKSKTEEDRRVEDLSAKLEEAIMLRQEAEAKLVQAQKTLEDL 532
S R L ++ ++ + E+ + L ++ + + + + + ++ L
Sbjct: 166 GSCSRALEHKVDLEDYKNQQKQLEQVIAINLLPSRDIQYLPILKMSTITGPVPREFKSQL 225
Query: 533 SSGRPVEKNRLDEVKAQVAAGIPTGPKGGPPPPPPPPGGMGPPPPPMPGMPGPPPPP 589
K L+ + ++ G G+ P P PG
Sbjct: 226 QEAPLEWKALLEMQQTKMVLETFGGDGHARGDSVSQGTGLAPGSPRKPGTSSIGNVN 282
Score = 41.0 bits (95), Expect = 0.002
Identities = 9/38 (23%), Positives = 10/38 (26%), Gaps = 1/38 (2%)
Query: 555 PTGPK-GGPPPPPPPPGGMGPPPPPMPGMPGPPPPPMP 591
P P+ G P G PG P P
Sbjct: 309 PGRPEPGSAGTWNPGRPEPGSAGTWNPGRPEPGSAGTW 346
Score = 39.5 bits (91), Expect = 0.005
Identities = 7/38 (18%), Positives = 8/38 (21%)
Query: 555 PTGPKGGPPPPPPPPGGMGPPPPPMPGMPGPPPPPMPE 592
+ G P G PG P P
Sbjct: 284 GSYGPGSSGTWNPGRPEPGSAGTWNPGRPEPGSAGTWN 321
Score = 39.1 bits (90), Expect = 0.005
Identities = 7/40 (17%), Positives = 7/40 (17%)
Query: 553 GIPTGPKGGPPPPPPPPGGMGPPPPPMPGMPGPPPPPMPE 592
G P G P P G P
Sbjct: 336 GRPEPGSAGTWNPGRPEPGSAGTWNTGSSGSSSFRPDSSG 375
Score = 39.1 bits (90), Expect = 0.005
Identities = 4/33 (12%), Positives = 4/33 (12%)
Query: 553 GIPTGPKGGPPPPPPPPGGMGPPPPPMPGMPGP 585
G G P P
Sbjct: 354 GSAGTWNTGSSGSSSFRPDSSGHGNIRPSSPDW 386
Score = 39.1 bits (90), Expect = 0.006
Identities = 12/39 (30%), Positives = 12/39 (30%), Gaps = 3/39 (7%)
Query: 555 PTGPKGGPPPPPPPPGGMGPPPPPMPGM--PGPPPPPMP 591
P G P P G P P G PG P P
Sbjct: 319 TWNP-GRPEPGSAGTWNPGRPEPGSAGTWNPGRPEPGSA 356
Score = 38.3 bits (88), Expect = 0.009
Identities = 9/59 (15%), Positives = 11/59 (18%), Gaps = 2/59 (3%)
Query: 537 PVEKNRLDEVKAQVAAGIPTGPKGGPPPPPPPPGGMGPPPPPMPGM--PGPPPPPMPEM 593
+E + V PG P G PG P
Sbjct: 235 LLEMQQTKMVLETFGGDGHARGDSVSQGTGLAPGSPRKPGTSSIGNVNPGSYGPGSSGT 293
Score = 38.3 bits (88), Expect = 0.010
Identities = 11/128 (8%), Positives = 27/128 (21%), Gaps = 5/128 (3%)
Query: 465 RGGCDPDFRSSRRFQLDVQPLVEHLAEKSKTEEDRRVEDLSAKLEEAIMLRQEAEAKLVQ 524
+G C ++D++ + + + + + + +
Sbjct: 165 KGSCSRALE----HKVDLEDYKNQQKQLEQVIAINLLPSRDIQYLPILKMSTITGPVPRE 220
Query: 525 AQKTLEDLSSGRPVEKNRLDEVKAQVAAGIPTGPKGGPPPPPPPPGGMGPPPPPMPGMPG 584
+ L++ G +G G P P G
Sbjct: 221 FKSQLQEAPLEWKALLEMQQTKMVLETFGGDGHARGDSVSQGTGL-APGSPRKPGTSSIG 279
Query: 585 PPPPPMPE 592
P
Sbjct: 280 NVNPGSYG 287
Score = 37.5 bits (86), Expect = 0.016
Identities = 9/41 (21%), Positives = 10/41 (24%)
Query: 551 AAGIPTGPKGGPPPPPPPPGGMGPPPPPMPGMPGPPPPPMP 591
+ G GP G P PG P P
Sbjct: 277 SIGNVNPGSYGPGSSGTWNPGRPEPGSAGTWNPGRPEPGSA 317
Score = 35.6 bits (81), Expect = 0.070
Identities = 9/33 (27%), Positives = 9/33 (27%), Gaps = 1/33 (3%)
Query: 552 AGIPTGPKGGPPPPPPPPGGMGPPPPPMPGMPG 584
AG G P G G P P G
Sbjct: 356 AGTWNTGSSGSSSFRPDSSGHGNIRPSSPD-WG 387
Score = 31.8 bits (71), Expect = 1.1
Identities = 20/158 (12%), Positives = 45/158 (28%), Gaps = 13/158 (8%)
Query: 440 IRDDQYVRLAYYKLLEECVSQIVLHRGGCDPDFRSSRRFQLDVQPLVEHLAEKSKTEEDR 499
+ ++ E+ S+I + R + Q +V+ + L + + E D
Sbjct: 101 FAKANNNDNTFKQINEDLRSRIEILRRKVIEQVQRINLLQKNVR---DQLVDMKRLEVDI 157
Query: 500 RVEDLSAKLEEAIMLRQEAEAKL-VQAQKTLEDLSSGRPVEKNRLDEVKAQVAAGIPTGP 558
++ S K + L + + + QK LE + + + + +
Sbjct: 158 DIKIRSCKGSCSRALEHKVDLEDYKNQQKQLEQVIAINLLPSRDIQYLPIL--------- 208
Query: 559 KGGPPPPPPPPGGMGPPPPPMPGMPGPPPPPMPEMYTD 596
K P P +M +
Sbjct: 209 KMSTITGPVPREFKSQLQEAPLEWKALLEMQQTKMVLE 246
>2v8f_C MDIA1, profilin IIA; alternative splicing, protein-binding,
cytoplasm, acetylation, cytoskeleton, actin-binding;
1.1A {Mus musculus}
Length = 26
Score = 38.9 bits (90), Expect = 1e-04
Identities = 13/19 (68%), Positives = 16/19 (84%), Gaps = 1/19 (5%)
Query: 574 PPPPPMPGMPG-PPPPPMP 591
PPPPP+PG+ PPPPP+P
Sbjct: 2 PPPPPLPGVASIPPPPPLP 20
Score = 37.7 bits (87), Expect = 4e-04
Identities = 14/20 (70%), Positives = 15/20 (75%), Gaps = 1/20 (5%)
Query: 563 PPPPPPPGGMG-PPPPPMPG 581
PPPPP PG PPPPP+PG
Sbjct: 2 PPPPPLPGVASIPPPPPLPG 21
>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein,
abnormal nuclear; zinc-finger, beta barrel, VWA domain,
gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP:
a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1
Length = 926
Score = 44.8 bits (105), Expect = 1e-04
Identities = 10/45 (22%), Positives = 11/45 (24%)
Query: 547 KAQVAAGIPTGPKGGPPPPPPPPGGMGPPPPPMPGMPGPPPPPMP 591
K +V P P M P P GM P
Sbjct: 5 KKRVYPQAQLQYGQNATPLQQPAQFMPPQDPAAAGMSYGQMGMPP 49
Score = 44.8 bits (105), Expect = 1e-04
Identities = 14/52 (26%), Positives = 16/52 (30%), Gaps = 4/52 (7%)
Query: 548 AQVAAGIPTGPKGGP----PPPPPPPGGMGPPPPPMPGMPGPPPPPMPEMYT 595
AQ+ G P P PP P GM MP P + T
Sbjct: 12 AQLQYGQNATPLQQPAQFMPPQDPAAAGMSYGQMGMPPQGAVPSMGQQQFLT 63
Score = 44.4 bits (104), Expect = 2e-04
Identities = 10/47 (21%), Positives = 11/47 (23%)
Query: 548 AQVAAGIPTGPKGGPPPPPPPPGGMGPPPPPMPGMPGPPPPPMPEMY 594
AAG+ G G PP P G P
Sbjct: 34 DPAAAGMSYGQMGMPPQGAVPSMGQQQFLTPAQEQLHQQIDQATTSM 80
Score = 44.0 bits (103), Expect = 2e-04
Identities = 5/47 (10%), Positives = 7/47 (14%)
Query: 548 AQVAAGIPTGPKGGPPPPPPPPGGMGPPPPPMPGMPGPPPPPMPEMY 594
Q M P+ P +P
Sbjct: 59 QQFLTPAQEQLHQQIDQATTSMNDMHLHNVPLVDPNAYMQPQVPVQM 105
Score = 44.0 bits (103), Expect = 2e-04
Identities = 8/47 (17%), Positives = 14/47 (29%)
Query: 548 AQVAAGIPTGPKGGPPPPPPPPGGMGPPPPPMPGMPGPPPPPMPEMY 594
A ++ G P G P + P + M +M+
Sbjct: 38 AGMSYGQMGMPPQGAVPSMGQQQFLTPAQEQLHQQIDQATTSMNDMH 84
Score = 43.7 bits (102), Expect = 3e-04
Identities = 9/46 (19%), Positives = 10/46 (21%)
Query: 548 AQVAAGIPTGPKGGPPPPPPPPGGMGPPPPPMPGMPGPPPPPMPEM 593
+ P P G MG PP G P
Sbjct: 21 TPLQQPAQFMPPQDPAAAGMSYGQMGMPPQGAVPSMGQQQFLTPAQ 66
Score = 43.3 bits (101), Expect = 4e-04
Identities = 6/44 (13%), Positives = 9/44 (20%)
Query: 548 AQVAAGIPTGPKGGPPPPPPPPGGMGPPPPPMPGMPGPPPPPMP 591
Q A + P + M M P +
Sbjct: 49 PQGAVPSMGQQQFLTPAQEQLHQQIDQATTSMNDMHLHNVPLVD 92
Score = 42.5 bits (99), Expect = 8e-04
Identities = 6/44 (13%), Positives = 7/44 (15%)
Query: 548 AQVAAGIPTGPKGGPPPPPPPPGGMGPPPPPMPGMPGPPPPPMP 591
AQ G P P P +
Sbjct: 27 AQFMPPQDPAAAGMSYGQMGMPPQGAVPSMGQQQFLTPAQEQLH 70
Score = 41.3 bits (96), Expect = 0.002
Identities = 2/43 (4%), Positives = 4/43 (9%)
Query: 549 QVAAGIPTGPKGGPPPPPPPPGGMGPPPPPMPGMPGPPPPPMP 591
+ G P +
Sbjct: 46 GMPPQGAVPSMGQQQFLTPAQEQLHQQIDQATTSMNDMHLHNV 88
Score = 41.0 bits (95), Expect = 0.002
Identities = 7/44 (15%), Positives = 8/44 (18%)
Query: 548 AQVAAGIPTGPKGGPPPPPPPPGGMGPPPPPMPGMPGPPPPPMP 591
Q + P P P M PM
Sbjct: 74 DQATTSMNDMHLHNVPLVDPNAYMQPQVPVQMGTPLQQQQQPMA 117
Score = 40.6 bits (94), Expect = 0.003
Identities = 9/48 (18%), Positives = 12/48 (25%), Gaps = 2/48 (4%)
Query: 548 AQVAAGIPTGPKGGPPPP--PPPPGGMGPPPPPMPGMPGPPPPPMPEM 593
AA + + G PP P G P + M
Sbjct: 33 QDPAAAGMSYGQMGMPPQGAVPSMGQQQFLTPAQEQLHQQIDQATTSM 80
Score = 40.6 bits (94), Expect = 0.003
Identities = 4/47 (8%), Positives = 5/47 (10%)
Query: 548 AQVAAGIPTGPKGGPPPPPPPPGGMGPPPPPMPGMPGPPPPPMPEMY 594
+ P P P Y
Sbjct: 50 QGAVPSMGQQQFLTPAQEQLHQQIDQATTSMNDMHLHNVPLVDPNAY 96
Score = 40.6 bits (94), Expect = 0.003
Identities = 6/47 (12%), Positives = 7/47 (14%)
Query: 548 AQVAAGIPTGPKGGPPPPPPPPGGMGPPPPPMPGMPGPPPPPMPEMY 594
A + G M P P M
Sbjct: 52 AVPSMGQQQFLTPAQEQLHQQIDQATTSMNDMHLHNVPLVDPNAYMQ 98
Score = 40.2 bits (93), Expect = 0.003
Identities = 7/44 (15%), Positives = 8/44 (18%)
Query: 548 AQVAAGIPTGPKGGPPPPPPPPGGMGPPPPPMPGMPGPPPPPMP 591
Q T P P +P G P
Sbjct: 70 HQQIDQATTSMNDMHLHNVPLVDPNAYMQPQVPVQMGTPLQQQQ 113
Score = 39.8 bits (92), Expect = 0.005
Identities = 3/41 (7%), Positives = 3/41 (7%)
Query: 555 PTGPKGGPPPPPPPPGGMGPPPPPMPGMPGPPPPPMPEMYT 595
P P P
Sbjct: 69 LHQQIDQATTSMNDMHLHNVPLVDPNAYMQPQVPVQMGTPL 109
Score = 39.4 bits (91), Expect = 0.006
Identities = 4/44 (9%), Positives = 5/44 (11%)
Query: 548 AQVAAGIPTGPKGGPPPPPPPPGGMGPPPPPMPGMPGPPPPPMP 591
G P M +P
Sbjct: 46 GMPPQGAVPSMGQQQFLTPAQEQLHQQIDQATTSMNDMHLHNVP 89
Score = 39.0 bits (90), Expect = 0.008
Identities = 5/40 (12%), Positives = 6/40 (15%)
Query: 552 AGIPTGPKGGPPPPPPPPGGMGPPPPPMPGMPGPPPPPMP 591
+ P P M P M
Sbjct: 67 EQLHQQIDQATTSMNDMHLHNVPLVDPNAYMQPQVPVQMG 106
Score = 38.7 bits (89), Expect = 0.010
Identities = 7/37 (18%), Positives = 7/37 (18%)
Query: 558 PKGGPPPPPPPPGGMGPPPPPMPGMPGPPPPPMPEMY 594
K P G P P P M
Sbjct: 5 KKRVYPQAQLQYGQNATPLQQPAQFMPPQDPAAAGMS 41
Score = 37.9 bits (87), Expect = 0.020
Identities = 7/39 (17%), Positives = 7/39 (17%)
Query: 555 PTGPKGGPPPPPPPPGGMGPPPPPMPGMPGPPPPPMPEM 593
P P P G P P M
Sbjct: 90 LVDPNAYMQPQVPVQMGTPLQQQQQPMAAPAYGQPSAAM 128
Score = 37.5 bits (86), Expect = 0.023
Identities = 5/36 (13%), Positives = 7/36 (19%)
Query: 558 PKGGPPPPPPPPGGMGPPPPPMPGMPGPPPPPMPEM 593
P+ P P P +M
Sbjct: 10 PQAQLQYGQNATPLQQPAQFMPPQDPAAAGMSYGQM 45
Score = 37.1 bits (85), Expect = 0.030
Identities = 6/46 (13%), Positives = 8/46 (17%)
Query: 548 AQVAAGIPTGPKGGPPPPPPPPGGMGPPPPPMPGMPGPPPPPMPEM 593
Q+ + P P M P M
Sbjct: 71 QQIDQATTSMNDMHLHNVPLVDPNAYMQPQVPVQMGTPLQQQQQPM 116
Score = 37.1 bits (85), Expect = 0.032
Identities = 8/36 (22%), Positives = 9/36 (25%)
Query: 556 TGPKGGPPPPPPPPGGMGPPPPPMPGMPGPPPPPMP 591
+ K P G P P PP P
Sbjct: 2 SHHKKRVYPQAQLQYGQNATPLQQPAQFMPPQDPAA 37
Score = 36.3 bits (83), Expect = 0.051
Identities = 1/40 (2%), Positives = 3/40 (7%)
Query: 555 PTGPKGGPPPPPPPPGGMGPPPPPMPGMPGPPPPPMPEMY 594
P ++
Sbjct: 47 MPPQGAVPSMGQQQFLTPAQEQLHQQIDQATTSMNDMHLH 86
Score = 36.0 bits (82), Expect = 0.079
Identities = 5/44 (11%), Positives = 8/44 (18%)
Query: 548 AQVAAGIPTGPKGGPPPPPPPPGGMGPPPPPMPGMPGPPPPPMP 591
+ + P P P + P P
Sbjct: 79 SMNDMHLHNVPLVDPNAYMQPQVPVQMGTPLQQQQQPMAAPAYG 122
Score = 35.2 bits (80), Expect = 0.11
Identities = 5/44 (11%), Positives = 7/44 (15%)
Query: 548 AQVAAGIPTGPKGGPPPPPPPPGGMGPPPPPMPGMPGPPPPPMP 591
+ P P P+ P P
Sbjct: 78 TSMNDMHLHNVPLVDPNAYMQPQVPVQMGTPLQQQQQPMAAPAY 121
Score = 34.8 bits (79), Expect = 0.14
Identities = 5/41 (12%), Positives = 6/41 (14%)
Query: 555 PTGPKGGPPPPPPPPGGMGPPPPPMPGMPGPPPPPMPEMYT 595
P P P + P Y
Sbjct: 82 DMHLHNVPLVDPNAYMQPQVPVQMGTPLQQQQQPMAAPAYG 122
Score = 34.0 bits (77), Expect = 0.29
Identities = 6/43 (13%), Positives = 7/43 (16%)
Query: 549 QVAAGIPTGPKGGPPPPPPPPGGMGPPPPPMPGMPGPPPPPMP 591
+P P P P M P
Sbjct: 83 MHLHNVPLVDPNAYMQPQVPVQMGTPLQQQQQPMAAPAYGQPS 125
Score = 32.9 bits (74), Expect = 0.67
Identities = 7/45 (15%), Positives = 7/45 (15%)
Query: 549 QVAAGIPTGPKGGPPPPPPPPGGMGPPPPPMPGMPGPPPPPMPEM 593
A P P P M P P
Sbjct: 93 PNAYMQPQVPVQMGTPLQQQQQPMAAPAYGQPSAAMGQNMRPMNQ 137
Score = 32.1 bits (72), Expect = 1.0
Identities = 5/43 (11%), Positives = 6/43 (13%)
Query: 549 QVAAGIPTGPKGGPPPPPPPPGGMGPPPPPMPGMPGPPPPPMP 591
+ P P G P P
Sbjct: 85 LHNVPLVDPNAYMQPQVPVQMGTPLQQQQQPMAAPAYGQPSAA 127
Score = 31.7 bits (71), Expect = 1.3
Identities = 5/44 (11%), Positives = 7/44 (15%)
Query: 548 AQVAAGIPTGPKGGPPPPPPPPGGMGPPPPPMPGMPGPPPPPMP 591
+ P P + PM P
Sbjct: 85 LHNVPLVDPNAYMQPQVPVQMGTPLQQQQQPMAAPAYGQPSAAM 128
>4dmt_A Collagen III derived peptide; collagen triple helix, VON willebrand
factor, structural Pro; 1.39A {Synthetic}
Length = 32
Score = 38.8 bits (90), Expect = 1e-04
Identities = 18/31 (58%), Positives = 19/31 (61%), Gaps = 2/31 (6%)
Query: 561 GPPPPPPPPGGMGPPPPPMPGMPGPPPPPMP 591
GPP PP PPG G P + G PGPP PP P
Sbjct: 2 GPPGPPGPPGPRGQPG--VMGFPGPPGPPGP 30
Score = 36.5 bits (84), Expect = 0.001
Identities = 19/32 (59%), Positives = 19/32 (59%), Gaps = 3/32 (9%)
Query: 555 PTGPKGGPPPPPPPPGGMGPPPPPMPGMPGPP 586
P GP G PP P PG MG P P PG PGPP
Sbjct: 3 PPGPPG-PPGPRGQPGVMGFPGP--PGPPGPP 31
>3b0s_A Collagen-like peptide; triple helix, structural protein; HET: HYP;
1.45A {Synthetic} PDB: 1ym8_A*
Length = 27
Score = 38.9 bits (90), Expect = 1e-04
Identities = 20/29 (68%), Positives = 20/29 (68%), Gaps = 2/29 (6%)
Query: 561 GPPPPPPPPGGMGPPPPPMPGMPGPPPPP 589
GPP PP PPG GPP P PG PGPP PP
Sbjct: 1 GPPGPPGPPGPPGPPGP--PGPPGPPGPP 27
>2y5t_E C1; immune system, antibody, rheumatoid arthritis; 2.20A {Mus
musculus}
Length = 34
Score = 38.8 bits (90), Expect = 2e-04
Identities = 18/33 (54%), Positives = 18/33 (54%), Gaps = 4/33 (12%)
Query: 561 GPPPPPPPPGGMGPP----PPPMPGMPGPPPPP 589
GPP PP PPG GPP PG GPP PP
Sbjct: 1 GPPGPPGPPGPPGPPGARGLTGRPGDAGPPGPP 33
>1nay_A CCP4, collagen-like peptide; collagen assembly, structural protein;
2.60A {Synthetic} SCOP: k.3.1.1
Length = 56
Score = 38.5 bits (89), Expect = 3e-04
Identities = 20/35 (57%), Positives = 20/35 (57%), Gaps = 4/35 (11%)
Query: 557 GPKG--GPPPPPPPPGGMGPPPPPMPGMPGPPPPP 589
GP G GPP PP PPG GPP P PG PG P
Sbjct: 1 GPPGPPGPPGPPGPPGPPGPPGP--PGPPGSGYIP 33
Score = 33.5 bits (76), Expect = 0.021
Identities = 19/31 (61%), Positives = 19/31 (61%), Gaps = 5/31 (16%)
Query: 561 GPPPPPPPPGGMGPPPPPMPGMPGPPPPPMP 591
GPP PP PPG PP PG PGPP PP P
Sbjct: 1 GPPGPPGPPG-----PPGPPGPPGPPGPPGP 26
Score = 31.2 bits (70), Expect = 0.15
Identities = 15/29 (51%), Positives = 15/29 (51%), Gaps = 2/29 (6%)
Query: 555 PTGPKG--GPPPPPPPPGGMGPPPPPMPG 581
P GP G GPP PP PPG P P G
Sbjct: 11 PPGPPGPPGPPGPPGPPGSGYIPEAPRDG 39
>3u29_A Triple helical peptide; triple helix, biosynthetic protein; 2.00A
{Synthetic construct}
Length = 26
Score = 37.9 bits (88), Expect = 3e-04
Identities = 16/25 (64%), Positives = 16/25 (64%), Gaps = 2/25 (8%)
Query: 562 PPPPPPPPGGMGPPPPPMPGMPGPP 586
PP PP PPG G P PP P PGPP
Sbjct: 1 PPGPPGPPGPKGDPGPPGP--PGPP 23
Score = 34.4 bits (79), Expect = 0.006
Identities = 15/24 (62%), Positives = 15/24 (62%), Gaps = 2/24 (8%)
Query: 561 GPPPPPPPPGGMGPPPPPMPGMPG 584
GPP PP P G GPP PP P PG
Sbjct: 3 GPPGPPGPKGDPGPPGPPGP--PG 24
Score = 34.0 bits (78), Expect = 0.007
Identities = 15/25 (60%), Positives = 15/25 (60%), Gaps = 2/25 (8%)
Query: 565 PPPPPGGMGPPPPPMPGMPGPPPPP 589
PP PPG GP P P PGPP PP
Sbjct: 1 PPGPPGPPGPKGDPGP--PGPPGPP 23
Score = 33.6 bits (77), Expect = 0.010
Identities = 15/24 (62%), Positives = 15/24 (62%), Gaps = 2/24 (8%)
Query: 568 PPGGMGPPPPPMPGMPGPPPPPMP 591
PPG GPP P G PGPP PP P
Sbjct: 1 PPGPPGPPGPK--GDPGPPGPPGP 22
Score = 30.9 bits (70), Expect = 0.078
Identities = 14/24 (58%), Positives = 14/24 (58%), Gaps = 1/24 (4%)
Query: 555 PTGPKGGPPPPPPPPGGMGPPPPP 578
P GP G PP P PG GPP PP
Sbjct: 1 PPGPPG-PPGPKGDPGPPGPPGPP 23
Score = 30.6 bits (69), Expect = 0.11
Identities = 13/18 (72%), Positives = 13/18 (72%), Gaps = 2/18 (11%)
Query: 555 PTGPKG--GPPPPPPPPG 570
P GPKG GPP PP PPG
Sbjct: 7 PPGPKGDPGPPGPPGPPG 24
>3t4f_A Collagen mimetic peptide; triple helix, biosynthetic protein; 1.68A
{Synthetic construct}
Length = 26
Score = 37.5 bits (87), Expect = 3e-04
Identities = 16/25 (64%), Positives = 16/25 (64%), Gaps = 2/25 (8%)
Query: 562 PPPPPPPPGGMGPPPPPMPGMPGPP 586
PP PP PPG G P PP P PGPP
Sbjct: 1 PPGPPGPPGPKGEPGPPGP--PGPP 23
Score = 34.1 bits (78), Expect = 0.007
Identities = 15/25 (60%), Positives = 15/25 (60%), Gaps = 2/25 (8%)
Query: 565 PPPPPGGMGPPPPPMPGMPGPPPPP 589
PP PPG GP P P PGPP PP
Sbjct: 1 PPGPPGPPGPKGEPGP--PGPPGPP 23
Score = 33.7 bits (77), Expect = 0.008
Identities = 15/24 (62%), Positives = 15/24 (62%), Gaps = 2/24 (8%)
Query: 568 PPGGMGPPPPPMPGMPGPPPPPMP 591
PPG GPP P G PGPP PP P
Sbjct: 1 PPGPPGPPGPK--GEPGPPGPPGP 22
Score = 33.7 bits (77), Expect = 0.009
Identities = 15/24 (62%), Positives = 15/24 (62%), Gaps = 2/24 (8%)
Query: 561 GPPPPPPPPGGMGPPPPPMPGMPG 584
GPP PP P G GPP PP P PG
Sbjct: 3 GPPGPPGPKGEPGPPGPPGP--PG 24
Score = 31.0 bits (70), Expect = 0.079
Identities = 14/24 (58%), Positives = 14/24 (58%), Gaps = 1/24 (4%)
Query: 555 PTGPKGGPPPPPPPPGGMGPPPPP 578
P GP G PP P PG GPP PP
Sbjct: 1 PPGPPG-PPGPKGEPGPPGPPGPP 23
Score = 30.6 bits (69), Expect = 0.12
Identities = 13/18 (72%), Positives = 13/18 (72%), Gaps = 2/18 (11%)
Query: 555 PTGPKG--GPPPPPPPPG 570
P GPKG GPP PP PPG
Sbjct: 7 PPGPKGEPGPPGPPGPPG 24
>1x1k_F HOST-guest peptide (Pro-Pro-Gly)4-(Pro-allohyp-
Gly)-(Pro-Pro-Gly)4; non-natural amino acid, collagen
model peptide, puckering, triple-helix stability; 1.10A
{Synthetic} PDB: 1wzb_A 1k6f_A 2klw_C*
Length = 30
Score = 37.7 bits (87), Expect = 4e-04
Identities = 20/29 (68%), Positives = 20/29 (68%), Gaps = 1/29 (3%)
Query: 562 PPPPPPPPGGMGPPPPP-MPGMPGPPPPP 589
PP PP PPG GPP PP PG PGPP PP
Sbjct: 1 PPGPPGPPGPPGPPGPPGPPGPPGPPGPP 29
Score = 35.8 bits (82), Expect = 0.002
Identities = 19/28 (67%), Positives = 19/28 (67%), Gaps = 1/28 (3%)
Query: 565 PPPPPGGMGPPPPP-MPGMPGPPPPPMP 591
PP PPG GPP PP PG PGPP PP P
Sbjct: 1 PPGPPGPPGPPGPPGPPGPPGPPGPPGP 28
Score = 35.1 bits (80), Expect = 0.004
Identities = 17/26 (65%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
Query: 568 PPGGMGPPPPP-MPGMPGPPPPPMPE 592
PPG GPP PP PG PGPP PP P
Sbjct: 1 PPGPPGPPGPPGPPGPPGPPGPPGPP 26
>1bkv_A T3-785; collagen, hydroxyproline, hydrogen bonding; 2.00A {} SCOP:
k.3.1.1
Length = 30
Score = 37.2 bits (86), Expect = 5e-04
Identities = 17/30 (56%), Positives = 18/30 (60%), Gaps = 6/30 (20%)
Query: 562 PPPPPPPPG-----GMGPPPPPMPGMPGPP 586
PP PP PPG G+ PP P PG PGPP
Sbjct: 1 PPGPPGPPGITGARGLAGPPGP-PGPPGPP 29
Score = 35.6 bits (82), Expect = 0.002
Identities = 16/29 (55%), Positives = 16/29 (55%), Gaps = 2/29 (6%)
Query: 561 GPPPPPPPPGGMGPPPPPMPGMPGPPPPP 589
GPP PP G G PP P PGPP PP
Sbjct: 3 GPPGPPGITGARGLAGPPGP--PGPPGPP 29
>2g66_A Collagen; 3(S)hydroxyproline, 4(R)hydroxyproline, UP pucker, DOWN
pucker, structural protein; 1.80A {Synthetic}
Length = 31
Score = 36.7 bits (84), Expect = 7e-04
Identities = 19/29 (65%), Positives = 19/29 (65%), Gaps = 2/29 (6%)
Query: 561 GPPPPPPPPGGMGPPPPPMPGMPGPPPPP 589
GPP PP PPG G P P PG PGPP PP
Sbjct: 4 GPPGPPGPPGXPGXPGP--PGPPGPPGPP 30
Score = 34.0 bits (77), Expect = 0.007
Identities = 19/31 (61%), Positives = 19/31 (61%), Gaps = 2/31 (6%)
Query: 561 GPPPPPPPPGGMGPPPPPMPGMPGPPPPPMP 591
GPP PP PPG G P P G PGPP PP P
Sbjct: 1 GPPGPPGPPGPPGXPGXP--GPPGPPGPPGP 29
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 42.0 bits (98), Expect = 0.001
Identities = 79/536 (14%), Positives = 144/536 (26%), Gaps = 236/536 (44%)
Query: 81 EQLNQKFEDMLN---DMNLSDEKKEPLRRQPLANKKKMLLMHYKGTVTSYENKSKFDKPI 137
QL ++F +L + +D+ EP L KF +
Sbjct: 31 SQLQEQFNKILPEPTEGFAADD--EPTTPAELV--------------------GKF---L 65
Query: 138 EYIQYLSQPELSVNKMYSCIESLRIALTNHPLSWVNEFVLQDNKNFRKYPIAFLYPRFPS 197
Y+ L +P +K+ + L + L EF +L
Sbjct: 66 GYVSSLVEP----SKVGQFDQVLNLCL--------TEFE-----------NCYL------ 96
Query: 198 RSRND-----SRYDRVQYECVRCIRAIMNNTVGLKQMFGQKEALTIVARSLDPNKPTVML 252
ND ++ + + + + +K A + R D + +
Sbjct: 97 -EGNDIHALAAKLLQENDTTLVKTKEL------IKNYI---TARIMAKRPFDKKSNSALF 146
Query: 253 EAVKVLAAVCLIPPDGHDKVIKAITMSGELKGKERF--QPVVQGLMVKGNNEALRTACLQ 310
AV +G+ +++ AI F Q GN + +
Sbjct: 147 RAVG----------EGNAQLV-AI-----------FGGQ---------GNTD----DYFE 171
Query: 311 LINAIVATPDDLEFRLHLRNEIMRVGLYDLLDALEKDASEDVSVQLKVFIEHKEEDYYEF 370
E LR+ LY L D + + L I + F
Sbjct: 172 ------------E----LRD------LYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVF 209
Query: 371 IQRFDNVRMEIDDVNDCFETVRNMVMDSACEP---YLLSILQHLLFIRDDQNMVMDSACE 427
Q + + + + + P YLLSI
Sbjct: 210 TQGLN---------------ILEWLENPSNTPDKDYLLSI-------------------- 234
Query: 428 PY---LLSILQHLLFIRDDQYVRLAYYKLLEECVSQIVLHRGGCDP-DFRSSRRFQ---L 480
P L+ ++Q LA+Y + G P + RS +
Sbjct: 235 PISCPLIGVIQ------------LAHY--------VVTAKLLGFTPGELRS--YLKGATG 272
Query: 481 DVQPLVEHLA-EKSKTEEDRRVEDLSAKLEEA---IMLR-QEA------EAKLVQAQKTL 529
Q LV +A ++ + E K I +R EA +++
Sbjct: 273 HSQGLVTAVAIAETDSWES--FFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDS--- 327
Query: 530 EDLSSGRP--------VEKNRLDEVKAQVAAGIPT----------GPK----GGPP 563
+ + G P + + ++ + + + +P G K GPP
Sbjct: 328 LENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPP 383
Score = 33.1 bits (75), Expect = 0.64
Identities = 34/224 (15%), Positives = 65/224 (29%), Gaps = 76/224 (33%)
Query: 606 QACEEVKQSKKLAKILELILLMGNYMNSGSRNGGAFGFEINFLTKLSSTKDIENKTTLLH 665
+ E + EL+ G F + +++ L + +L+
Sbjct: 43 EPTEGFAADDEPTTPAELV--------------GKF---LGYVSSLVEPSKVGQFDQVLN 85
Query: 666 YLVDTIEQKFPECLKFGDELLHVDRAARVSTDVIQNSIRQMENNIKNLETDIQNCKQAPV 725
+ E + L+ D +H AA++ + ++ K L I+N A +
Sbjct: 86 LCLTEFENCY---LEGND--IHA-LAAKLLQENDTTLVKT-----KEL---IKNYITARI 131
Query: 726 ANENDKFLEIMEPFAKEVRQKITLLSNMSKN---MMTLYG----------DLAEFYTFDK 772
PF K+ L + + ++ ++G +L + Y
Sbjct: 132 M--------AKRPFDKKSNSA--LFRAVGEGNAQLVAIFGGQGNTDDYFEELRDLY---- 177
Query: 773 NIY-------------TLEEFFTDIKTFKDSFYQ-----AWQEN 798
Y TL E + F Q W EN
Sbjct: 178 QTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLEN 221
Score = 31.2 bits (70), Expect = 1.9
Identities = 17/84 (20%), Positives = 26/84 (30%), Gaps = 22/84 (26%)
Query: 143 LSQPEL-----SVNKMYSCIESLRIALTNHPLSWVNEFVL----QD----NKNFRKY--P 187
L+Q ++ N + + I+L N V+ Q N RK P
Sbjct: 344 LTQEQVQDYVNKTNSHLPAGKQVEISLVNGA----KNLVVSGPPQSLYGLNLTLRKAKAP 399
Query: 188 IAFLYPRFPSRSRN---DSRYDRV 208
R P R +R+ V
Sbjct: 400 SGLDQSRIPFSERKLKFSNRFLPV 423
>3b2c_A Collagen-like peptide; collagen stability, puckering, amino
acid-preferences, tripl structural protein; HET: HYP
HZP; 1.36A {Synthetic}
Length = 30
Score = 36.7 bits (84), Expect = 0.001
Identities = 18/29 (62%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
Query: 565 PPPPPGGMGPP-PPPMPGMPGPPPPPMPE 592
PP PPG GPP P PG PGPP PP P
Sbjct: 1 PPGPPGPPGPPGXPGXPGPPGPPGPPGPP 29
Score = 35.9 bits (82), Expect = 0.002
Identities = 18/29 (62%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
Query: 562 PPPPPPPPGGMGPP-PPPMPGMPGPPPPP 589
PP PP PPG G P P PG PGPP PP
Sbjct: 1 PPGPPGPPGPPGXPGXPGPPGPPGPPGPP 29
Score = 34.7 bits (79), Expect = 0.004
Identities = 20/32 (62%), Positives = 20/32 (62%), Gaps = 3/32 (9%)
Query: 555 PTGPKGGPPPPPPPPGGMGPPPPPMPGMPGPP 586
P GP G PP PP PG GPP PP G PGPP
Sbjct: 1 PPGPPG-PPGPPGXPGXPGPPGPP--GPPGPP 29
>1wck_A BCLA protein; collagen-like protein, bacterial surface antigen,
jelly- roll topology, structural protein; 1.36A
{Bacillus anthracis}
Length = 220
Score = 40.7 bits (95), Expect = 0.001
Identities = 14/43 (32%), Positives = 15/43 (34%), Gaps = 6/43 (13%)
Query: 555 PTGPKG--GPPPPPPPPGGMGPPPPPMP----GMPGPPPPPMP 591
TGP G GP P P G G P P G+ P
Sbjct: 48 TTGPTGPTGPTGPTGPTGATGLTGPTGPTGPSGLGLPAGLYAF 90
>2drt_A Collagen like peptide; triple helix, Leu, structural protein; 1.60A
{Synthetic}
Length = 30
Score = 35.8 bits (82), Expect = 0.002
Identities = 19/29 (65%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
Query: 562 PPPPPPPPGGMGPP-PPPMPGMPGPPPPP 589
PP PP PPG G P PP PG PGPP PP
Sbjct: 1 PPGPPGPPGPPGLPGPPGPPGPPGPPGPP 29
Score = 35.0 bits (80), Expect = 0.003
Identities = 17/26 (65%), Positives = 18/26 (69%), Gaps = 1/26 (3%)
Query: 568 PPGGMGPPPPP-MPGMPGPPPPPMPE 592
PPG GPP PP +PG PGPP PP P
Sbjct: 1 PPGPPGPPGPPGLPGPPGPPGPPGPP 26
Score = 34.6 bits (79), Expect = 0.005
Identities = 18/29 (62%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
Query: 565 PPPPPGGMGPPPPP-MPGMPGPPPPPMPE 592
PP PPG GPP P PG PGPP PP P
Sbjct: 1 PPGPPGPPGPPGLPGPPGPPGPPGPPGPP 29
>1o91_A Collagen alpha 1(VIII) chain; C1Q_LIKE_domain, extracellular
matrix, adhesion, connective tissue, repeat; HET: CPS;
1.9A {Mus musculus} SCOP: b.22.1.1
Length = 178
Score = 39.2 bits (91), Expect = 0.002
Identities = 11/84 (13%), Positives = 18/84 (21%), Gaps = 6/84 (7%)
Query: 561 GPPPPPPPPGGMGPP-PPPMPGMPGPP-PPPMPEMYTDCHKNIINGKQACEEVKQSKKLA 618
P P P G P + G+ P + +
Sbjct: 7 AVMPTPSPQGEYLPDMGLGIDGVKTPHAYAGKKGKHGGPAYEMPAFTAELTVPFPPVGAP 66
Query: 619 KILELILL-MGNYMNSGSRNGGAF 641
+ +L N + G F
Sbjct: 67 VKFDKLLYNGRQNYNPQT---GIF 87
>1q7d_A Collagen ALFA 1(I) chain peptide gpogpogfogergpogpogpo; integrin,
triplehelix, contractIle protein; 1.80A {Synthetic}
SCOP: k.3.1.1
Length = 26
Score = 35.7 bits (82), Expect = 0.002
Identities = 15/26 (57%), Positives = 15/26 (57%), Gaps = 5/26 (19%)
Query: 561 GPPPPPPPPGGMGPPPPPMPGMPGPP 586
GPP PP PG GPP P PGPP
Sbjct: 2 GPPGPPGFPGERGPPGP-----PGPP 22
Score = 32.7 bits (74), Expect = 0.019
Identities = 13/20 (65%), Positives = 13/20 (65%), Gaps = 1/20 (5%)
Query: 573 GPPPPP-MPGMPGPPPPPMP 591
GPP PP PG GPP PP P
Sbjct: 2 GPPGPPGFPGERGPPGPPGP 21
>1dzi_B Collagen; integrin; 2.1A {Homo sapiens} SCOP: k.3.1.1
Length = 26
Score = 35.7 bits (82), Expect = 0.002
Identities = 15/26 (57%), Positives = 15/26 (57%), Gaps = 5/26 (19%)
Query: 561 GPPPPPPPPGGMGPPPPPMPGMPGPP 586
GPP PP PG GPP P PGPP
Sbjct: 1 GPPGPPGFPGERGPPGP-----PGPP 21
Score = 32.7 bits (74), Expect = 0.019
Identities = 13/20 (65%), Positives = 13/20 (65%), Gaps = 1/20 (5%)
Query: 573 GPPPPP-MPGMPGPPPPPMP 591
GPP PP PG GPP PP P
Sbjct: 1 GPPGPPGFPGERGPPGPPGP 20
>1pk8_A RAT synapsin I; ATP binding, ATP grAsp, calcium (II) ION, membrane
protein; HET: ATP; 2.10A {Rattus norvegicus} SCOP:
c.30.1.5 d.142.1.3 PDB: 1px2_A*
Length = 422
Score = 40.6 bits (94), Expect = 0.002
Identities = 7/48 (14%), Positives = 9/48 (18%)
Query: 544 DEVKAQVAAGIPTGPKGGPPPPPPPPGGMGPPPPPMPGMPGPPPPPMP 591
+ + P P P PG P P
Sbjct: 20 NGYMTDLQRPQPPPPPPSAASPGATPGSAAASAERASTAAPVASPAAP 67
Score = 37.5 bits (86), Expect = 0.021
Identities = 6/59 (10%), Positives = 10/59 (16%)
Query: 531 DLSSGRPVEKNRLDEVKAQVAAGIPTGPKGGPPPPPPPPGGMGPPPPPMPGMPGPPPPP 589
+ + P + G P P+ P P
Sbjct: 13 NFMANLPNGYMTDLQRPQPPPPPPSAASPGATPGSAAASAERASTAAPVASPAAPSPGS 71
Score = 36.4 bits (83), Expect = 0.040
Identities = 10/44 (22%), Positives = 12/44 (27%)
Query: 548 AQVAAGIPTGPKGGPPPPPPPPGGMGPPPPPMPGMPGPPPPPMP 591
A + G T + PPPPPP P
Sbjct: 16 ANLPNGYMTDLQRPQPPPPPPSAASPGATPGSAAASAERASTAA 59
Score = 36.4 bits (83), Expect = 0.043
Identities = 7/53 (13%), Positives = 11/53 (20%)
Query: 539 EKNRLDEVKAQVAAGIPTGPKGGPPPPPPPPGGMGPPPPPMPGMPGPPPPPMP 591
+ N + + + PPP PG P
Sbjct: 11 DSNFMANLPNGYMTDLQRPQPPPPPPSAASPGATPGSAAASAERASTAAPVAS 63
Score = 35.2 bits (80), Expect = 0.092
Identities = 7/37 (18%), Positives = 7/37 (18%)
Query: 555 PTGPKGGPPPPPPPPGGMGPPPPPMPGMPGPPPPPMP 591
P P P P P P P
Sbjct: 33 PPPPSAASPGATPGSAAASAERASTAAPVASPAAPSP 69
Score = 34.4 bits (78), Expect = 0.15
Identities = 10/59 (16%), Positives = 14/59 (23%)
Query: 531 DLSSGRPVEKNRLDEVKAQVAAGIPTGPKGGPPPPPPPPGGMGPPPPPMPGMPGPPPPP 589
+L +G + R +A P G P P PG
Sbjct: 17 NLPNGYMTDLQRPQPPPPPPSAASPGATPGSAAASAERASTAAPVASPAAPSPGSSGGG 75
Score = 30.6 bits (68), Expect = 2.3
Identities = 8/31 (25%), Positives = 8/31 (25%)
Query: 562 PPPPPPPPGGMGPPPPPMPGMPGPPPPPMPE 592
P PPPP P PG
Sbjct: 27 QRPQPPPPPPSAASPGATPGSAAASAERAST 57
Score = 29.8 bits (66), Expect = 4.3
Identities = 8/37 (21%), Positives = 8/37 (21%)
Query: 556 TGPKGGPPPPPPPPGGMGPPPPPMPGMPGPPPPPMPE 592
P G P PP PG E
Sbjct: 17 NLPNGYMTDLQRPQPPPPPPSAASPGATPGSAAASAE 53
>2grx_C Protein TONB; beta barrel, outer membrane, heterocomplex,
inter-protein beta sheet, protein-protein, metal
transport; HET: GCN KDO GMH FTT DAO MYR FCI; 3.30A
{Escherichia coli} SCOP: d.212.1.2 PDB: 1xx3_A
Length = 229
Score = 39.7 bits (92), Expect = 0.002
Identities = 14/56 (25%), Positives = 19/56 (33%)
Query: 537 PVEKNRLDEVKAQVAAGIPTGPKGGPPPPPPPPGGMGPPPPPMPGMPGPPPPPMPE 592
V +++ A P P P P P P P + P P P P P+
Sbjct: 36 SVTMVTPADLEPPQAVQPPPEPVVEPEPEPEPIPEPPKEAPVVIEKPKPKPKPKPK 91
Score = 37.4 bits (86), Expect = 0.014
Identities = 12/75 (16%), Positives = 23/75 (30%), Gaps = 4/75 (5%)
Query: 518 AEAKLVQAQKTLEDLSSGRPVEKNRLDEVKAQVAAGIPTGPKGGPPPPPPPPGGMGPPPP 577
+ + +E + +P+ + + + P+ P P P P P
Sbjct: 15 PRGSHMSVHQVIELPAPAQPISVTMVTPADLEPPQAVQPPPEPVVEPEPEPE----PIPE 70
Query: 578 PMPGMPGPPPPPMPE 592
P P P P+
Sbjct: 71 PPKEAPVVIEKPKPK 85
Score = 35.5 bits (81), Expect = 0.054
Identities = 15/88 (17%), Positives = 20/88 (22%)
Query: 506 AKLEEAIMLRQEAEAKLVQAQKTLEDLSSGRPVEKNRLDEVKAQVAAGIPTGPKGGPPPP 565
A+ M+ Q E + P + + K PK P P
Sbjct: 32 AQPISVTMVTPADLEPPQAVQPPPEPVVEPEPEPEPIPEPPKEAPVVIEKPKPKPKPKPK 91
Query: 566 PPPPGGMGPPPPPMPGMPGPPPPPMPEM 593
P P P P P
Sbjct: 92 PVKKVQEQPKRDVKPVESRPASPFENTA 119
Score = 33.9 bits (77), Expect = 0.17
Identities = 6/47 (12%), Positives = 9/47 (19%)
Query: 547 KAQVAAGIPTGPKGGPPPPPPPPGGMGPPPPPMPGMPGPPPPPMPEM 593
+V K P P P P+ +
Sbjct: 93 VKKVQEQPKRDVKPVESRPASPFENTAPARLTSSTATAATSKPVTSV 139
Score = 33.1 bits (75), Expect = 0.28
Identities = 8/55 (14%), Positives = 10/55 (18%)
Query: 537 PVEKNRLDEVKAQVAAGIPTGPKGGPPPPPPPPGGMGPPPPPMPGMPGPPPPPMP 591
E + V + P P P P P P
Sbjct: 68 IPEPPKEAPVVIEKPKPKPKPKPKPVKKVQEQPKRDVKPVESRPASPFENTAPAR 122
Score = 33.1 bits (75), Expect = 0.32
Identities = 6/56 (10%), Positives = 11/56 (19%)
Query: 537 PVEKNRLDEVKAQVAAGIPTGPKGGPPPPPPPPGGMGPPPPPMPGMPGPPPPPMPE 592
+ + K + + PK P P P +
Sbjct: 79 IEKPKPKPKPKPKPVKKVQEQPKRDVKPVESRPASPFENTAPARLTSSTATAATSK 134
Score = 32.8 bits (74), Expect = 0.40
Identities = 9/32 (28%), Positives = 9/32 (28%)
Query: 562 PPPPPPPPGGMGPPPPPMPGMPGPPPPPMPEM 593
P P P M P P PPP
Sbjct: 29 PAPAQPISVTMVTPADLEPPQAVQPPPEPVVE 60
Score = 32.4 bits (73), Expect = 0.54
Identities = 7/55 (12%), Positives = 9/55 (16%)
Query: 537 PVEKNRLDEVKAQVAAGIPTGPKGGPPPPPPPPGGMGPPPPPMPGMPGPPPPPMP 591
P V + PK P + P P
Sbjct: 69 PEPPKEAPVVIEKPKPKPKPKPKPVKKVQEQPKRDVKPVESRPASPFENTAPARL 123
Score = 32.0 bits (72), Expect = 0.71
Identities = 5/55 (9%), Positives = 8/55 (14%)
Query: 537 PVEKNRLDEVKAQVAAGIPTGPKGGPPPPPPPPGGMGPPPPPMPGMPGPPPPPMP 591
K ++ P P P P +
Sbjct: 70 EPPKEAPVVIEKPKPKPKPKPKPVKKVQEQPKRDVKPVESRPASPFENTAPARLT 124
Score = 31.6 bits (71), Expect = 1.0
Identities = 4/47 (8%), Positives = 6/47 (12%)
Query: 545 EVKAQVAAGIPTGPKGGPPPPPPPPGGMGPPPPPMPGMPGPPPPPMP 591
+ K V P + P
Sbjct: 99 QPKRDVKPVESRPASPFENTAPARLTSSTATAATSKPVTSVASGPRA 145
Score = 30.8 bits (69), Expect = 1.7
Identities = 7/55 (12%), Positives = 11/55 (20%)
Query: 537 PVEKNRLDEVKAQVAAGIPTGPKGGPPPPPPPPGGMGPPPPPMPGMPGPPPPPMP 591
P ++ + K + P P P P P
Sbjct: 71 PPKEAPVVIEKPKPKPKPKPKPVKKVQEQPKRDVKPVESRPASPFENTAPARLTS 125
Score = 30.5 bits (68), Expect = 2.1
Identities = 7/60 (11%), Positives = 10/60 (16%), Gaps = 1/60 (1%)
Query: 537 PVEKNRLDEVKAQVAAGIPTGPKGGPPPPPPPPGGMGPPPPPMPGMPGPPPPPMPEMYTD 596
P K + + P P P P + P
Sbjct: 82 PKPKPKPKPKPVKKVQEQPK-RDVKPVESRPASPFENTAPARLTSSTATAATSKPVTSVA 140
Score = 29.7 bits (66), Expect = 3.9
Identities = 5/57 (8%), Positives = 9/57 (15%)
Query: 536 RPVEKNRLDEVKAQVAAGIPTGPKGGPPPPPPPPGGMGPPPPPMPGMPGPPPPPMPE 592
+++ K + K P P P
Sbjct: 72 PKEAPVVIEKPKPKPKPKPKPVKKVQEQPKRDVKPVESRPASPFENTAPARLTSSTA 128
Score = 29.3 bits (65), Expect = 5.5
Identities = 5/57 (8%), Positives = 6/57 (10%), Gaps = 2/57 (3%)
Query: 537 PVEKNRLDEVKAQVAAGIPTGPKGGPPPPPPPPGGMGPPPPPMPGMPGPPPPPMPEM 593
K + P P P P
Sbjct: 102 RDVKPVESRPASPFENTAPARLTSSTATAATSKPVTSVASGPRA--LSRNQPQYPAR 156
Score = 29.3 bits (65), Expect = 5.7
Identities = 7/32 (21%), Positives = 9/32 (28%)
Query: 562 PPPPPPPPGGMGPPPPPMPGMPGPPPPPMPEM 593
P P P + P P PP +
Sbjct: 27 ELPAPAQPISVTMVTPADLEPPQAVQPPPEPV 58
Score = 28.9 bits (64), Expect = 6.0
Identities = 6/43 (13%), Positives = 7/43 (16%)
Query: 551 AAGIPTGPKGGPPPPPPPPGGMGPPPPPMPGMPGPPPPPMPEM 593
+ P P PP P P
Sbjct: 22 VHQVIELPAPAQPISVTMVTPADLEPPQAVQPPPEPVVEPEPE 64
>2drx_A Collagen like peptide; triple helix, Leu, structural protein; 1.40A
{Synthetic}
Length = 30
Score = 35.4 bits (81), Expect = 0.003
Identities = 18/29 (62%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
Query: 565 PPPPPGGMGPPPPP-MPGMPGPPPPPMPE 592
PP PPG GPP P +PG PGPP PP P
Sbjct: 1 PPGPPGPPGPPGLPGLPGPPGPPGPPGPP 29
Score = 34.2 bits (78), Expect = 0.006
Identities = 19/29 (65%), Positives = 19/29 (65%), Gaps = 2/29 (6%)
Query: 561 GPPPPPPPPGGMGPPPPPMPGMPGPPPPP 589
GPP PP PPG G P P PG PGPP PP
Sbjct: 3 GPPGPPGPPGLPGLPGP--PGPPGPPGPP 29
Score = 33.4 bits (76), Expect = 0.014
Identities = 20/32 (62%), Positives = 20/32 (62%), Gaps = 3/32 (9%)
Query: 555 PTGPKGGPPPPPPPPGGMGPPPPPMPGMPGPP 586
P GP G PP PP PG GPP PP G PGPP
Sbjct: 1 PPGPPG-PPGPPGLPGLPGPPGPP--GPPGPP 29
>2wuh_B Collagen peptide; receptor-peptide complex, transferase,
nucleotide-binding, tyrosine-protein kinase; 1.60A {Homo
sapiens}
Length = 29
Score = 34.9 bits (80), Expect = 0.003
Identities = 16/31 (51%), Positives = 17/31 (54%), Gaps = 5/31 (16%)
Query: 561 GPPPPPPPPGGMGPPPPPMPGMPGPPPPPMP 591
GPP PP PPG P PG+ G P PP P
Sbjct: 2 GPPGPPGPPG-----PRGQPGVLGFPGPPGP 27
Score = 31.4 bits (71), Expect = 0.064
Identities = 16/32 (50%), Positives = 17/32 (53%), Gaps = 6/32 (18%)
Query: 555 PTGPKGGPPPPPPPPGGMGPPPPPMPGMPGPP 586
P GP G PP P PG +G PG PGPP
Sbjct: 3 PPGPPG-PPGPRGQPGVLG-----FPGPPGPP 28
>3hc7_A Gene 12 protein, GP12; alpha/beta sandwich, cell adhesion; 2.00A
{Mycobacterium phage D29}
Length = 254
Score = 38.9 bits (90), Expect = 0.004
Identities = 13/89 (14%), Positives = 23/89 (25%), Gaps = 12/89 (13%)
Query: 523 VQAQKTLEDLSSGRPVEKNRLDEVKAQVAAGIPTGPKG-----GPPPPPPPPGGMGPPPP 577
V Q + L +K + G P KG P P +G
Sbjct: 87 VVGQVLKHHILPPTGRLHRFLHRLKKVIFWGNPMRQKGFAHSDEWIHPVAAPDTLGILED 146
Query: 578 PMPGMPGPPPPPMPE------MYTDCHKN 600
+ + + + MY ++
Sbjct: 147 RLENLE-QYGFEVRDYAHDGDMYASIKED 174
>1g9l_A Polyadenylate-binding protein 1; all-helical domain, RNA binding
protein; NMR {Homo sapiens} SCOP: a.144.1.1 PDB: 1jgn_A
1jh4_A
Length = 144
Score = 37.5 bits (86), Expect = 0.005
Identities = 5/44 (11%), Positives = 9/44 (20%)
Query: 548 AQVAAGIPTGPKGGPPPPPPPPGGMGPPPPPMPGMPGPPPPPMP 591
+ + P P G+ P + P
Sbjct: 1 GPLGSAAAATPAVRTVPQYKYAAGVRNPQQHLNAQPQVTMQQPA 44
Score = 36.0 bits (82), Expect = 0.017
Identities = 5/46 (10%), Positives = 7/46 (15%)
Query: 548 AQVAAGIPTGPKGGPPPPPPPPGGMGPPPPPMPGMPGPPPPPMPEM 593
A A P + P P +
Sbjct: 8 AATPAVRTVPQYKYAAGVRNPQQHLNAQPQVTMQQPAVHVQGQEPL 53
Score = 35.6 bits (81), Expect = 0.025
Identities = 3/39 (7%), Positives = 5/39 (12%)
Query: 555 PTGPKGGPPPPPPPPGGMGPPPPPMPGMPGPPPPPMPEM 593
+ P P P +
Sbjct: 4 GSAAAATPAVRTVPQYKYAAGVRNPQQHLNAQPQVTMQQ 42
Score = 34.8 bits (79), Expect = 0.044
Identities = 5/41 (12%), Positives = 5/41 (12%)
Query: 555 PTGPKGGPPPPPPPPGGMGPPPPPMPGMPGPPPPPMPEMYT 595
P G P P M
Sbjct: 2 PLGSAAAATPAVRTVPQYKYAAGVRNPQQHLNAQPQVTMQQ 42
Score = 30.6 bits (68), Expect = 1.2
Identities = 4/43 (9%), Positives = 6/43 (13%)
Query: 548 AQVAAGIPTGPKGGPPPPPPPPGGMGPPPPPMPGMPGPPPPPM 590
+ P P + G P
Sbjct: 13 VRTVPQYKYAAGVRNPQQHLNAQPQVTMQQPAVHVQGQEPLTA 55
Score = 28.3 bits (62), Expect = 6.2
Identities = 4/35 (11%), Positives = 6/35 (17%), Gaps = 1/35 (2%)
Query: 557 GPKGGPPPPPPPPGGMGPPPPPMPGMPGPPPPPMP 591
G P P + P+
Sbjct: 21 YAAGVRNPQ-QHLNAQPQVTMQQPAVHVQGQEPLT 54
>1jvr_A HTLV-II MA, MA, human T-cell leukemia virus type II matrix protein;
HTLV-II matrix protein, retroviral matrix protein; NMR
{Human t-lymphotropic virus 2} SCOP: a.61.1.2
Length = 137
Score = 37.2 bits (85), Expect = 0.006
Identities = 16/66 (24%), Positives = 21/66 (31%), Gaps = 2/66 (3%)
Query: 532 LSSGRPVEKNRLDEVKAQVAAGIPTGPKGGPPPPPPPPGGMGPPPPPMPGMPGPPPPPMP 591
+ G P + + + P P P P PPPPP PPP +
Sbjct: 73 IPKGYPGRVVEIINILVKNQVSPSAPA--APVPTPICPTTTPPPPPPPSPEAHVPPPYVE 130
Query: 592 EMYTDC 597
T C
Sbjct: 131 PTTTQC 136
Score = 32.5 bits (73), Expect = 0.22
Identities = 11/35 (31%), Positives = 12/35 (34%), Gaps = 4/35 (11%)
Query: 564 PPPPPPGGMGPPPPPMPGMPGPPPPPMPEMYTDCH 598
P P P P P P PPP P + H
Sbjct: 93 VSPSAP----AAPVPTPICPTTTPPPPPPPSPEAH 123
>3oun_A Putative uncharacterized protein TB39.8; peptidoglycan, Ser/Thr
kinase, pseudokinase, FHA domain, REG phosphorylation;
HET: TPO; 2.71A {Mycobacterium tuberculosis}
Length = 157
Score = 37.2 bits (86), Expect = 0.007
Identities = 10/48 (20%), Positives = 12/48 (25%), Gaps = 4/48 (8%)
Query: 548 AQVAAGIPTG----PKGGPPPPPPPPGGMGPPPPPMPGMPGPPPPPMP 591
+ +P G GG P G P G P P
Sbjct: 9 HHSSGLVPRGSHMPQGGGYAEPAGRDYDYGQSGAPDYGQPAPGGYSGY 56
Score = 34.5 bits (79), Expect = 0.056
Identities = 8/61 (13%), Positives = 14/61 (22%), Gaps = 1/61 (1%)
Query: 532 LSSGRPVEKNRLDEVKAQVAAGIPTGPKGGPPPPPPPPGGMGPPPPPMPGMPGPPPPPMP 591
+ S + + + + + G P G G P P G
Sbjct: 1 MGSSQH-HHHHSSGLVPRGSHMPQGGGYAEPAGRDYDYGQSGAPDYGQPAPGGYSGYGQG 59
Query: 592 E 592
Sbjct: 60 G 60
Score = 31.8 bits (72), Expect = 0.51
Identities = 5/43 (11%), Positives = 6/43 (13%)
Query: 549 QVAAGIPTGPKGGPPPPPPPPGGMGPPPPPMPGMPGPPPPPMP 591
Q + P P P G
Sbjct: 23 QGGGYAEPAGRDYDYGQSGAPDYGQPAPGGYSGYGQGGYGSAG 65
Score = 30.2 bits (68), Expect = 1.5
Identities = 6/38 (15%), Positives = 6/38 (15%)
Query: 551 AAGIPTGPKGGPPPPPPPPGGMGPPPPPMPGMPGPPPP 588
AG P P G G
Sbjct: 30 PAGRDYDYGQSGAPDYGQPAPGGYSGYGQGGYGSAGTS 67
>3oqs_A Importin subunit alpha-2; importin alpha, karyopherin alpha,
nuclear localisation SIGN recognition, chloride
intracellular channel 4, CLIC4 NLS; 2.00A {Mus musculus}
PDB: 3rz9_A 3rzx_A 1q1s_C 1q1t_C 3tpo_A 3knd_A 1ejy_I
1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C 1ial_A
1y2a_C 3btr_C 3l3q_A* 3ve6_A 2c1m_A ...
Length = 510
Score = 38.8 bits (90), Expect = 0.007
Identities = 24/141 (17%), Positives = 44/141 (31%), Gaps = 13/141 (9%)
Query: 202 DSRYDRVQYECVRCIRAIMNNTVGLKQMFGQKEALTIVARSLDPNKPTVMLEAVKVLAAV 261
+ + +R I I+ T Q AL + L K + EA ++ +
Sbjct: 284 GATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNI 343
Query: 262 CLIPPDGHDKVIKAITMSGELKGKERFQPVVQGLMVKGNNEALRTACLQLINAIVATPDD 321
G I+ + G P + G++ K + + + A + N +
Sbjct: 344 T----AGRQDQIQQVVNHG-------LVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVE 392
Query: 322 LEFRLHLRNEIMRVGLYDLLD 342
L I L +LL
Sbjct: 393 QIVYLVHCGIIEP--LMNLLS 411
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein,
protein transport, armadillo repeats; 2.2A {Homo
sapiens} PDB: 3tj3_A
Length = 450
Score = 38.7 bits (90), Expect = 0.008
Identities = 24/155 (15%), Positives = 46/155 (29%), Gaps = 16/155 (10%)
Query: 202 DSRYDRVQYECVRCIRAIMNNTVGLKQMFGQKEALTIVARSLDPNKPTVMLEAVKVLAAV 261
+V +R + I+ Q+ AL + L K ++ EA ++ +
Sbjct: 244 MHNDYKVVSPALRAVGNIVTGDDIQTQVILNCSALQSLLHLLSSPKESIKKEACWTISNI 303
Query: 262 CLIPPDGHDKVIKAITMSGELKGKERFQPVVQGLMVKGNNEALRTACLQLINAIVATPDD 321
VI A P + ++ + A + NA +
Sbjct: 304 TAGNRAQIQTVIDANIF-----------PALISILQTAEFRTRKEAAWAITNATSGGSAE 352
Query: 322 LEFRLHLRNEIMRVGLYDLLDALEKDASEDVSVQL 356
++ + + L D L S+ V V L
Sbjct: 353 -----QIKYLVELGCIKPLCDLLTVMDSKIVQVAL 382
>2z73_A Rhodopsin; visual pigment, GQ-type, G-protein coupled receptor,
chromophore, glycoprotein, lipoprotein, membrane,
palmitate phosphorylation; HET: BOG RET PLM TWT PC1;
2.50A {Todarodes pacificus} PDB: 3aym_A* 3ayn_A* 2ziy_A*
Length = 448
Score = 38.4 bits (89), Expect = 0.009
Identities = 23/121 (19%), Positives = 38/121 (31%), Gaps = 6/121 (4%)
Query: 474 SSRRFQLDVQPLVEHLAEKSKTEEDRRVEDLSAKLEEAIMLRQEAEAKLVQAQKTLEDLS 533
S +F+ + + + ++ +D A+ E +A AQ
Sbjct: 318 SHPKFREAISQTFPWVLTCCQFDDKETEDDKDAETEIPAGESSDAAPSADAAQ------M 371
Query: 534 SGRPVEKNRLDEVKAQVAAGIPTGPKGGPPPPPPPPGGMGPPPPPMPGMPGPPPPPMPEM 593
++ + +A P G PP PP G P P G P PP P+
Sbjct: 372 KEMMAMMQKMQQQQAAYPPQGYAPPPQGYPPQGYPPQGYPPQGYPPQGYPPPPQGAPPQG 431
Query: 594 Y 594
Sbjct: 432 A 432
>1jer_A Cucumber stellacyanin; electron transport, copper, glycoprotein,
hydroxylation; 1.60A {Cucumis sativus} SCOP: b.6.1.1
Length = 138
Score = 36.5 bits (84), Expect = 0.011
Identities = 13/43 (30%), Positives = 15/43 (34%), Gaps = 6/43 (13%)
Query: 547 KAQVAAGIPTGPKGGPPPPPPPPGGMGPPPPPMPGMPGPPPPP 589
K + PPP PP + PPP PPP P
Sbjct: 101 KLSINVVAANATVSMPPPSSSPPSSVMPPP------VMPPPSP 137
Score = 31.9 bits (72), Expect = 0.32
Identities = 9/30 (30%), Positives = 9/30 (30%), Gaps = 4/30 (13%)
Query: 562 PPPPPPPPGGMGPPPPPMPGMPGPPPPPMP 591
PPP P PPP MP
Sbjct: 108 AANATVSM----PPPSSSPPSSVMPPPVMP 133
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 37.1 bits (85), Expect = 0.014
Identities = 15/48 (31%), Positives = 27/48 (56%), Gaps = 4/48 (8%)
Query: 797 ENI-KLREAEEKSIRVREAREKAENEK-KDKAARKKALIDMTTDQTQQ 842
E+I K RE + K ++ +A K ++ ++KA KK L + Q++Q
Sbjct: 85 ESIRKWREEQRKRLQELDAASKVMEQEWREKA--KKDLEEWNQRQSEQ 130
Score = 33.6 bits (76), Expect = 0.15
Identities = 7/33 (21%), Positives = 16/33 (48%), Gaps = 5/33 (15%)
Query: 800 KLREAEEKSIRVREARE--KAENEKKDKAARKK 830
+L + E +R+ RE + ++ D A++
Sbjct: 79 RLTQEPES---IRKWREEQRKRLQELDAASKVM 108
Score = 33.2 bits (75), Expect = 0.25
Identities = 10/51 (19%), Positives = 24/51 (47%), Gaps = 3/51 (5%)
Query: 795 WQENIK--LREAEEKSIRVREA-REKAENEKKDKAARKKALIDMTTDQTQQ 842
W+E + L+E + S + + REKA+ + ++ R+ ++ +
Sbjct: 90 WREEQRKRLQELDAASKVMEQEWREKAKKDLEEWNQRQSEQVEKNKINNRI 140
Score = 30.1 bits (67), Expect = 2.5
Identities = 15/71 (21%), Positives = 27/71 (38%), Gaps = 19/71 (26%)
Query: 490 AEKSKTEEDRRV----EDLSAKLEEAIMLRQEAEAK-----LVQAQKTLEDLSSGRP--V 538
T+E + E+ +L+E A +A+K LE+ + + V
Sbjct: 76 QADRLTQEPESIRKWREEQRKRLQE----LDAASKVMEQEWREKAKKDLEEWNQRQSEQV 131
Query: 539 EK----NRLDE 545
EK NR+ +
Sbjct: 132 EKNKINNRIAD 142
Score = 29.0 bits (64), Expect = 5.9
Identities = 11/60 (18%), Positives = 23/60 (38%), Gaps = 10/60 (16%)
Query: 778 EEFFTDIKTFKDSFYQAWQENIKLREAEEKSI----RVRE---AREKAENEKKDKAARKK 830
EE ++ D+ + + RE +K + + + + K N DKA ++
Sbjct: 92 EEQRKRLQE-LDA--ASKVMEQEWREKAKKDLEEWNQRQSEQVEKNKINNRIADKAFYQQ 148
Score = 28.6 bits (63), Expect = 7.5
Identities = 15/85 (17%), Positives = 27/85 (31%), Gaps = 23/85 (27%)
Query: 8 EEQENMLEKLNPEQLNQKFEDMLNDMNLSDEKKEPLRRQPLANKKKMLLMHYKGTVTSYE 67
EEQ L++L+ S ++ R + KK L + E
Sbjct: 92 EEQRKRLQELDAA---------------SKVMEQEWREK----AKKDLEEWNQRQSEQVE 132
Query: 68 NKKQENMLEKLNPEQ-LNQKFEDML 91
K N ++ + Q D++
Sbjct: 133 KNKINN---RIADKAFYQQPDADII 154
>3v1v_A 2-MIB synthase, 2-methylisoborneol synthase; class I terpenoid
cyclase fold, DDXXXXD motif, NDXXSXXXE MOT
methylisoborneol biosynthesis; HET: GST; 1.80A
{Streptomyces coelicolor} PDB: 3v1x_A*
Length = 433
Score = 37.8 bits (87), Expect = 0.016
Identities = 10/53 (18%), Positives = 14/53 (26%)
Query: 537 PVEKNRLDEVKAQVAAGIPTGPKGGPPPPPPPPGGMGPPPPPMPGMPGPPPPP 589
+ L + V P P P PP + + GP P
Sbjct: 30 SAASDFLAALHPPVTVPDPAPPPPPAPAAGNPPDTVTGDSVLQRILRGPTGPG 82
Score = 35.9 bits (82), Expect = 0.056
Identities = 13/46 (28%), Positives = 17/46 (36%), Gaps = 6/46 (13%)
Query: 551 AAGIPTGPKGGPPPPPPPP---GGMGP--PPPPMPGMPGPPPPPMP 591
+ +P G P + PP +P P PPPPP P
Sbjct: 12 SGLVPRGSHMVIPSASVTSAASDFLAALHPPVTVPD-PAPPPPPAP 56
Score = 35.9 bits (82), Expect = 0.066
Identities = 9/38 (23%), Positives = 10/38 (26%)
Query: 555 PTGPKGGPPPPPPPPGGMGPPPPPMPGMPGPPPPPMPE 592
PP PPPP G PP +
Sbjct: 30 SAASDFLAALHPPVTVPDPAPPPPPAPAAGNPPDTVTG 67
Score = 35.5 bits (81), Expect = 0.089
Identities = 10/35 (28%), Positives = 11/35 (31%)
Query: 555 PTGPKGGPPPPPPPPGGMGPPPPPMPGMPGPPPPP 589
T PP + P PP P P PP
Sbjct: 28 VTSAASDFLAALHPPVTVPDPAPPPPPAPAAGNPP 62
Score = 34.7 bits (79), Expect = 0.15
Identities = 9/43 (20%), Positives = 10/43 (23%)
Query: 548 AQVAAGIPTGPKGGPPPPPPPPGGMGPPPPPMPGMPGPPPPPM 590
A P P P PPP P + G
Sbjct: 31 AASDFLAALHPPVTVPDPAPPPPPAPAAGNPPDTVTGDSVLQR 73
Score = 34.3 bits (78), Expect = 0.16
Identities = 9/38 (23%), Positives = 10/38 (26%)
Query: 551 AAGIPTGPKGGPPPPPPPPGGMGPPPPPMPGMPGPPPP 588
A P P G PP + P PG
Sbjct: 49 APPPPPAPAAGNPPDTVTGDSVLQRILRGPTGPGTTSL 86
Score = 34.3 bits (78), Expect = 0.16
Identities = 13/44 (29%), Positives = 14/44 (31%), Gaps = 1/44 (2%)
Query: 549 QVAAGIPTGPKGGP-PPPPPPPGGMGPPPPPMPGMPGPPPPPMP 591
+AA P P PPPPP P PP P
Sbjct: 35 FLAALHPPVTVPDPAPPPPPAPAAGNPPDTVTGDSVLQRILRGP 78
Score = 34.0 bits (77), Expect = 0.22
Identities = 8/41 (19%), Positives = 8/41 (19%), Gaps = 1/41 (2%)
Query: 552 AGIPT-GPKGGPPPPPPPPGGMGPPPPPMPGMPGPPPPPMP 591
G T P PP G P P
Sbjct: 79 TGPGTTSLAPAVRYGRQPGPEAPASAPPAAGRAVPGLYHHP 119
Score = 33.2 bits (75), Expect = 0.36
Identities = 11/46 (23%), Positives = 14/46 (30%)
Query: 548 AQVAAGIPTGPKGGPPPPPPPPGGMGPPPPPMPGMPGPPPPPMPEM 593
A P P PP G P +P P P + E+
Sbjct: 86 LAPAVRYGRQPGPEAPASAPPAAGRAVPGLYHHPVPEPDPVRVEEV 131
Score = 32.8 bits (74), Expect = 0.52
Identities = 14/57 (24%), Positives = 17/57 (29%)
Query: 533 SSGRPVEKNRLDEVKAQVAAGIPTGPKGGPPPPPPPPGGMGPPPPPMPGMPGPPPPP 589
SSG + + A V + PP P PPP P G P
Sbjct: 11 SSGLVPRGSHMVIPSASVTSAASDFLAALHPPVTVPDPAPPPPPAPAAGNPPDTVTG 67
Score = 32.8 bits (74), Expect = 0.61
Identities = 12/59 (20%), Positives = 12/59 (20%), Gaps = 11/59 (18%)
Query: 548 AQVAAGIPT---GPKGGPPPPPPPPGGMGP-------PPPPMPGMPGP-PPPPMPEMYT 595
AAG P P G G PG P PP
Sbjct: 54 PAPAAGNPPDTVTGDSVLQRILRGPTGPGTTSLAPAVRYGRQPGPEAPASAPPAAGRAV 112
Score = 31.3 bits (70), Expect = 1.4
Identities = 10/53 (18%), Positives = 12/53 (22%), Gaps = 16/53 (30%)
Query: 556 TGPKGGPPPPPPPPGGMGPPPP----------------PMPGMPGPPPPPMPE 592
+ P G P P +P P PPP P
Sbjct: 3 SSHHHHHHSSGLVPRGSHMVIPSASVTSAASDFLAALHPPVTVPDPAPPPPPA 55
Score = 30.1 bits (67), Expect = 3.3
Identities = 6/46 (13%), Positives = 8/46 (17%), Gaps = 1/46 (2%)
Query: 546 VKAQVAAGIPTGPKGGPPPPPPPPGGMGPPPPPMPGMPGPPPPPMP 591
A+ P P P P P +
Sbjct: 27 SVTSAASDFLAALHPPVTVPDPAPPPPPAPAAGNPP-DTVTGDSVL 71
Score = 30.1 bits (67), Expect = 4.2
Identities = 5/32 (15%), Positives = 6/32 (18%), Gaps = 1/32 (3%)
Query: 560 GGPPPPPPPPGGMGPPPPPMPGMPGPPPPPMP 591
G G+ P M P
Sbjct: 2 GSSHHHHHHSSGLVPRGSHMVI-PSASVTSAA 32
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus} PDB: 3lvh_A
Length = 624
Score = 37.7 bits (87), Expect = 0.022
Identities = 17/88 (19%), Positives = 23/88 (26%), Gaps = 20/88 (22%)
Query: 499 RRVEDLSAKLEEAIMLRQEAEAKLVQAQKTLEDLSSGRPVEKNRLDEVKAQVAAGIPTGP 558
+ KL+ + LR+E E +L + GP
Sbjct: 553 KEYLTKVDKLDASESLRKEEEQATETQPIVYGQ---------PQL---------MLTAGP 594
Query: 559 KGGPPPPPPPPGGMGPP--PPPMPGMPG 584
PP P G P P PG
Sbjct: 595 SVAVPPQAPFGYGYTAPAYGQPQPGFGY 622
Score = 33.0 bits (75), Expect = 0.55
Identities = 9/53 (16%), Positives = 11/53 (20%)
Query: 539 EKNRLDEVKAQVAAGIPTGPKGGPPPPPPPPGGMGPPPPPMPGMPGPPPPPMP 591
L + + Q P P PP P P P
Sbjct: 564 ASESLRKEEEQATETQPIVYGQPQLMLTAGPSVAVPPQAPFGYGYTAPAYGQP 616
Score = 32.3 bits (73), Expect = 0.94
Identities = 12/55 (21%), Positives = 15/55 (27%), Gaps = 1/55 (1%)
Query: 539 EKNRLDEVKAQVAAGIPTGPKGGPPPPPPPPGGMGPPPPPMPGMPGPPPPPMPEM 593
E+ + E + V GP PP G P P P M
Sbjct: 571 EEEQATETQPIVYGQPQLMLTAGPSVAVPPQAPFGYGYTA-PAYGQPQPGFGYSM 624
Score = 31.5 bits (71), Expect = 1.4
Identities = 10/54 (18%), Positives = 12/54 (22%)
Query: 540 KNRLDEVKAQVAAGIPTGPKGGPPPPPPPPGGMGPPPPPMPGMPGPPPPPMPEM 593
K + A G P G PP P G P +
Sbjct: 563 DASESLRKEEEQATETQPIVYGQPQLMLTAGPSVAVPPQAPFGYGYTAPAYGQP 616
>3a58_A Exocyst complex component SEC3; protein complex, PH domain, GTPase,
membrane traffic, coiled coil, exocytosis,
phosphoprotein; HET: GNP; 2.60A {Saccharomyces
cerevisiae}
Length = 320
Score = 36.8 bits (84), Expect = 0.029
Identities = 10/56 (17%), Positives = 13/56 (23%)
Query: 548 AQVAAGIPTGPKGGPPPPPPPPGGMGPPPPPMPGMPGPPPPPMPEMYTDCHKNIIN 603
A + + G PP + E Y K IIN
Sbjct: 36 AHHSRNVSQGAVPSSAPPVSGGNYSHKRNVSRASNSSQTSNFLAEQYERDRKAIIN 91
Score = 36.1 bits (82), Expect = 0.051
Identities = 7/42 (16%), Positives = 10/42 (23%)
Query: 548 AQVAAGIPTGPKGGPPPPPPPPGGMGPPPPPMPGMPGPPPPP 589
+ A I P P P + +P P
Sbjct: 242 SYQRAVITNRPGSVSPIKSPTSNFTTNTTQSVGSVPFSAPTE 283
Score = 32.2 bits (72), Expect = 0.79
Identities = 7/76 (9%), Positives = 10/76 (13%)
Query: 516 QEAEAKLVQAQKTLEDLSSGRPVEKNRLDEVKAQVAAGIPTGPKGGPPPPPPPPGGMGPP 575
+E + G E D + P P
Sbjct: 204 KERTVFIKSLITLYIQTFEGHVPELVNWDLSLFYLDERSYQRAVITNRPGSVSPIKSPTS 263
Query: 576 PPPMPGMPGPPPPPMP 591
P
Sbjct: 264 NFTTNTTQSVGSVPFS 279
Score = 31.4 bits (70), Expect = 1.2
Identities = 5/38 (13%), Positives = 6/38 (15%)
Query: 555 PTGPKGGPPPPPPPPGGMGPPPPPMPGMPGPPPPPMPE 592
+ G P P P P
Sbjct: 247 VITNRPGSVSPIKSPTSNFTTNTTQSVGSVPFSAPTER 284
Score = 31.4 bits (70), Expect = 1.3
Identities = 6/64 (9%), Positives = 11/64 (17%), Gaps = 3/64 (4%)
Query: 533 SSGRPVEKNRLDEVKAQVAAGIPTGPKGGPPPPPPPPGGMGPPPPPMPGM---PGPPPPP 589
+ RP + + + P P P
Sbjct: 248 ITNRPGSVSPIKSPTSNFTTNTTQSVGSVPFSAPTERTRRSETESVNPVSTPASVEYHAG 307
Query: 590 MPEM 593
M +
Sbjct: 308 MKSL 311
Score = 29.5 bits (65), Expect = 4.6
Identities = 3/55 (5%), Positives = 5/55 (9%)
Query: 542 RLDEVKAQVAAGIPTGPKGGPPPPPPPPGGMGPPPPPMPGMPGPPPPPMPEMYTD 596
L + + P P
Sbjct: 227 ELVNWDLSLFYLDERSYQRAVITNRPGSVSPIKSPTSNFTTNTTQSVGSVPFSAP 281
>2v53_B Collagen alpha-1(III) chain; glycosylated protein, cell adhesion,
glycoprotein, ionic channel, ION transport, copper,
calcium, secreted, transport; HET: NAG; 3.20A {Homo
sapiens}
Length = 33
Score = 31.8 bits (72), Expect = 0.042
Identities = 15/33 (45%), Positives = 15/33 (45%), Gaps = 3/33 (9%)
Query: 557 GPKGGPPP--PPPPPGGMGPPPPPMP-GMPGPP 586
GP G P P P P G G P P G PG P
Sbjct: 1 GPPGPPGPPGPSGPRGQPGVMGFPGPKGPPGAP 33
>1g66_A Acetyl xylan esterase II; serine hydrolase, acetyl xylopyranose,
hydrolase; 0.90A {Penicillium purpurogenum} SCOP:
c.69.1.30 PDB: 1bs9_A 2axe_A*
Length = 207
Score = 35.1 bits (80), Expect = 0.067
Identities = 11/65 (16%), Positives = 20/65 (30%), Gaps = 5/65 (7%)
Query: 534 SGRPVEKNRLDEVKAQVAAGIPTGPKGGPPPPPPPPGGMGPPPPPMPGMPGPPPPPMPEM 593
+ + + ++ VKA + G P G G P G P ++
Sbjct: 113 TAVQLSSSAVNMVKAAIFMGDPMFRAGLSYEVGTCAAGGFDQRP-----AGFSCPSAAKI 167
Query: 594 YTDCH 598
+ C
Sbjct: 168 KSYCD 172
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment
2, heavy meromyosin, essential light chain, motor
protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1
PDB: 3j04_A 3dtp_B 3dtp_A
Length = 1184
Score = 35.2 bits (81), Expect = 0.11
Identities = 27/116 (23%), Positives = 57/116 (49%), Gaps = 11/116 (9%)
Query: 2 DLQDILEEQENMLEKLNPE--QLNQKFEDMLNDMNLSDEKKEPLRRQPLANKKKMLLMHY 59
DL++ LEE+E +KL E + K + M +D+ + +++ L ++ +K +
Sbjct: 959 DLEEQLEEEEAARQKLQLEKVTADGKIKKMEDDILIMEDQNNKLTKE----RKLLEERVS 1014
Query: 60 KGTVTSYENKKQENMLEKLNPEQLNQKFEDMLNDMNLSDEKKEPLRRQPLANKKKM 115
T E +++ L KL K E M++++ + +K+E R++ K+K+
Sbjct: 1015 DLTTNLAEEEEKAKNLTKLK-----NKHESMISELEVRLKKEEKSRQELEKIKRKL 1065
Score = 32.1 bits (73), Expect = 1.0
Identities = 15/61 (24%), Positives = 29/61 (47%)
Query: 491 EKSKTEEDRRVEDLSAKLEEAIMLRQEAEAKLVQAQKTLEDLSSGRPVEKNRLDEVKAQV 550
K K + + + +L +L++ RQE E + + DL + ++ E+KAQ+
Sbjct: 1031 TKLKNKHESMISELEVRLKKEEKSRQELEKIKRKLEGESSDLHEQIAELQAQIAELKAQL 1090
Query: 551 A 551
A
Sbjct: 1091 A 1091
Score = 29.8 bits (67), Expect = 4.9
Identities = 13/63 (20%), Positives = 32/63 (50%), Gaps = 2/63 (3%)
Query: 490 AEKSKTEEDRRVEDLSAKLEEAIMLRQEAEAKLVQAQKTLEDLSSGRPVEKNRLDEVKAQ 549
AEK K ++ ++ DL +LEE RQ+ + + V A ++ + + +++ +++ +
Sbjct: 948 AEKKKMQQ--QMLDLEEQLEEEEAARQKLQLEKVTADGKIKKMEDDILIMEDQNNKLTKE 1005
Query: 550 VAA 552
Sbjct: 1006 RKL 1008
>2yew_A Capsid protein, coat protein; alphavirus, molecular dynamics; 5.00A
{Barmah forest virus}
Length = 253
Score = 34.6 bits (79), Expect = 0.12
Identities = 11/36 (30%), Positives = 11/36 (30%), Gaps = 4/36 (11%)
Query: 554 IPTGPKGGPPPPPPPPGGMGPPPPPMPGMPGPPPPP 589
IPT G P P P P P PP
Sbjct: 4 IPTQTFYGRRWRPAPV----QRYIPQPQPPAPPRRR 35
Score = 31.9 bits (72), Expect = 0.89
Identities = 8/43 (18%), Positives = 10/43 (23%)
Query: 549 QVAAGIPTGPKGGPPPPPPPPGGMGPPPPPMPGMPGPPPPPMP 591
Q+ A + PPP P P P
Sbjct: 43 QLVAALGALALQPKQKQKRAQKKPKKTPPPKPKKTQKPKKPTQ 85
Score = 31.9 bits (72), Expect = 0.90
Identities = 8/57 (14%), Positives = 15/57 (26%)
Query: 536 RPVEKNRLDEVKAQVAAGIPTGPKGGPPPPPPPPGGMGPPPPPMPGMPGPPPPPMPE 592
R ++L ++ A + A + P P P P +
Sbjct: 34 RRRGPSQLQQLVAALGALALQPKQKQKRAQKKPKKTPPPKPKKTQKPKKPTQKKKSK 90
Score = 30.8 bits (69), Expect = 1.7
Identities = 7/35 (20%), Positives = 7/35 (20%)
Query: 555 PTGPKGGPPPPPPPPGGMGPPPPPMPGMPGPPPPP 589
P PPP P P P
Sbjct: 58 KQKRAQKKPKKTPPPKPKKTQKPKKPTQKKKSKPG 92
Score = 30.4 bits (68), Expect = 2.6
Identities = 6/41 (14%), Positives = 9/41 (21%), Gaps = 7/41 (17%)
Query: 558 PKGGPPPPPPPPGGMGPPPPPMPGM-------PGPPPPPMP 591
P+ PP PP G + +
Sbjct: 24 PQPQPPAPPRRRRGPSQLQQLVAALGALALQPKQKQKRAQK 64
Score = 29.6 bits (66), Expect = 4.7
Identities = 6/39 (15%), Positives = 7/39 (17%)
Query: 555 PTGPKGGPPPPPPPPGGMGPPPPPMPGMPGPPPPPMPEM 593
+ P PPP P P
Sbjct: 59 QKRAQKKPKKTPPPKPKKTQKPKKPTQKKKSKPGKRMRN 97
Score = 29.2 bits (65), Expect = 5.1
Identities = 8/42 (19%), Positives = 8/42 (19%)
Query: 546 VKAQVAAGIPTGPKGGPPPPPPPPGGMGPPPPPMPGMPGPPP 587
K PPP P P P P
Sbjct: 52 ALQPKQKQKRAQKKPKKTPPPKPKKTQKPKKPTQKKKSKPGK 93
Score = 29.2 bits (65), Expect = 6.2
Identities = 9/56 (16%), Positives = 14/56 (25%)
Query: 536 RPVEKNRLDEVKAQVAAGIPTGPKGGPPPPPPPPGGMGPPPPPMPGMPGPPPPPMP 591
P + +++ VAA + PPP P P
Sbjct: 31 PPRRRRGPSQLQQLVAALGALALQPKQKQKRAQKKPKKTPPPKPKKTQKPKKPTQK 86
Score = 28.4 bits (63), Expect = 8.9
Identities = 6/44 (13%), Positives = 8/44 (18%)
Query: 546 VKAQVAAGIPTGPKGGPPPPPPPPGGMGPPPPPMPGMPGPPPPP 589
+ A + P PP P P
Sbjct: 48 LGALALQPKQKQKRAQKKPKKTPPPKPKKTQKPKKPTQKKKSKP 91
>1juo_A Sorcin; calcium-binding proteins, penta-EF-hand, PEF, X-RAY, metal
transport; 2.20A {Homo sapiens} SCOP: a.39.1.8 PDB:
2jc2_A
Length = 198
Score = 34.0 bits (78), Expect = 0.12
Identities = 10/28 (35%), Positives = 10/28 (35%)
Query: 565 PPPPPGGMGPPPPPMPGMPGPPPPPMPE 592
P P G G P G PG P P
Sbjct: 4 PGHPGAGGGYYPGGYGGAPGGPAFPGQT 31
Score = 30.9 bits (70), Expect = 1.3
Identities = 8/33 (24%), Positives = 9/33 (27%)
Query: 562 PPPPPPPPGGMGPPPPPMPGMPGPPPPPMPEMY 594
P P G PG P P +Y
Sbjct: 4 PGHPGAGGGYYPGGYGGAPGGPAFPGQTQDPLY 36
Score = 30.1 bits (68), Expect = 2.4
Identities = 11/39 (28%), Positives = 12/39 (30%), Gaps = 4/39 (10%)
Query: 555 PTGPKGGPPPPPPPPGGMGPPPPPMPGMPGPPPPPMPEM 593
P P G P GG P P PG P+
Sbjct: 4 PGHPGAGGGYYPGGYGG----APGGPAFPGQTQDPLYGY 38
Score = 29.3 bits (66), Expect = 4.4
Identities = 9/30 (30%), Positives = 9/30 (30%), Gaps = 1/30 (3%)
Query: 567 PPPGGMGPPPPPMPGMPGPPPPPMPEMYTD 596
P G G P G G P P T
Sbjct: 4 PGHPGAGGGYYP-GGYGGAPGGPAFPGQTQ 32
>2uv8_A Fatty acid synthase subunit alpha (FAS2); fatty acid biosynthesis,
malonyl/palmitoyl transferase, phosphopantetheine,
transferase; HET: GVL FMN; 3.10A {Saccharomyces
cerevisiae} PDB: 2vkz_A* 3hmj_A*
Length = 1887
Score = 34.6 bits (79), Expect = 0.21
Identities = 15/78 (19%), Positives = 20/78 (25%), Gaps = 12/78 (15%)
Query: 525 AQKTL------EDLSSGRPVE-----KNRLDEVKAQVAAGIPTGPKGGPPPPPPPPGGMG 573
AQ+TL D + E K+ E+ + P P
Sbjct: 57 AQRTLKNKYESYDAALSLHREILCYSKDA-KEIYYTPDPSELAAKEEPAKEEAPAPTPAA 115
Query: 574 PPPPPMPGMPGPPPPPMP 591
P P P P P
Sbjct: 116 SAPAPAAAAPAPVAAAAP 133
Score = 32.3 bits (73), Expect = 0.99
Identities = 8/48 (16%), Positives = 9/48 (18%)
Query: 544 DEVKAQVAAGIPTGPKGGPPPPPPPPGGMGPPPPPMPGMPGPPPPPMP 591
K + A P P P P P P
Sbjct: 97 LAAKEEPAKEEAPAPTPAASAPAPAAAAPAPVAAAAPAAAAAEIADEP 144
Score = 32.3 bits (73), Expect = 1.0
Identities = 8/46 (17%), Positives = 10/46 (21%)
Query: 544 DEVKAQVAAGIPTGPKGGPPPPPPPPGGMGPPPPPMPGMPGPPPPP 589
E+ A+ P P P P P P
Sbjct: 95 SELAAKEEPAKEEAPAPTPAASAPAPAAAAPAPVAAAAPAAAAAEI 140
>2wsc_E PSAE, PSI-E A, photosystem I reaction center subunit IV A,
chloroplastic; photosynthesis, electron transfer,
membrane proteins, large complexes; HET: CL1 PQN BCR LMU
LMG SUC UNL; 3.30A {Arabidopsis thaliana} PDB: 2wse_E*
2wsf_E* 2o01_E* 3lw5_E*
Length = 143
Score = 32.7 bits (73), Expect = 0.22
Identities = 6/31 (19%), Positives = 7/31 (22%)
Query: 560 GGPPPPPPPPGGMGPPPPPMPGMPGPPPPPM 590
P P P PPP+
Sbjct: 49 PAPASSSSKDSPAAAAAPDGATATKPKPPPI 79
Score = 31.1 bits (69), Expect = 0.82
Identities = 5/33 (15%), Positives = 5/33 (15%)
Query: 557 GPKGGPPPPPPPPGGMGPPPPPMPGMPGPPPPP 589
P P PP P
Sbjct: 49 PAPASSSSKDSPAAAAAPDGATATKPKPPPIGP 81
Score = 30.7 bits (68), Expect = 1.0
Identities = 6/31 (19%), Positives = 7/31 (22%)
Query: 563 PPPPPPPGGMGPPPPPMPGMPGPPPPPMPEM 593
P P P P P P +
Sbjct: 49 PAPASSSSKDSPAAAAAPDGATATKPKPPPI 79
Score = 29.6 bits (65), Expect = 2.4
Identities = 5/32 (15%), Positives = 5/32 (15%), Gaps = 4/32 (12%)
Query: 560 GGPPPPPPPPGGMGPPPPPMPGMPGPPPPPMP 591
P P P P P
Sbjct: 47 EDPAPASSSS----KDSPAAAAAPDGATATKP 74
>3llr_A DNA (cytosine-5)-methyltransferase 3A; DNA methyltransferase,
methylysine binding, STR genomics consortium, SGC,
alternative promoter usage; HET: DNA BTB; 2.30A {Homo
sapiens}
Length = 154
Score = 32.5 bits (73), Expect = 0.26
Identities = 15/84 (17%), Positives = 32/84 (38%), Gaps = 1/84 (1%)
Query: 481 DVQPLVEHLAEKSKTEEDRRVEDLSAKLEEAIMLRQEAEAKLVQAQKTLEDLSSGRPVEK 540
+ PL + + +++ A + E + + KL ++ + + VE
Sbjct: 70 KLMPLSSFCSAFHQATYNKQPMYRKA-IYEVLQVASSRAGKLFPVCHDSDESDTAKAVEV 128
Query: 541 NRLDEVKAQVAAGIPTGPKGGPPP 564
++ + P+GPKG PP
Sbjct: 129 QNKPMIEWALGGFQPSGPKGLEPP 152
>4f6o_A Metacaspase-1; rossmann fold, hydrolase; HET: DFH; 1.68A
{Saccharomyces cerevisiae}
Length = 350
Score = 33.8 bits (76), Expect = 0.26
Identities = 10/50 (20%), Positives = 15/50 (30%)
Query: 544 DEVKAQVAAGIPTGPKGGPPPPPPPPGGMGPPPPPMPGMPGPPPPPMPEM 593
++ KAQ++ G PP PPP P +
Sbjct: 1 EQAKAQLSNGYNNPNVNASNMYGPPQNMSLPPPQTQTIQGTDQPYQYSQC 50
Score = 30.3 bits (67), Expect = 2.8
Identities = 8/51 (15%), Positives = 11/51 (21%), Gaps = 5/51 (9%)
Query: 555 PTGPKGGPPPPPPPPGGMGPPPPPMPGMPGPPPPPM-----PEMYTDCHKN 600
P PP +P P + P Y+ C
Sbjct: 3 AKAQLSNGYNNPNVNASNMYGPPQNMSLPPPQTQTIQGTDQPYQYSQCTGR 53
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP,
translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Length = 504
Score = 33.8 bits (78), Expect = 0.27
Identities = 10/47 (21%), Positives = 13/47 (27%)
Query: 547 KAQVAAGIPTGPKGGPPPPPPPPGGMGPPPPPMPGMPGPPPPPMPEM 593
++Q+A K P GGM M M M
Sbjct: 452 QSQMAKLNQQMAKMMDPRVLHHMGGMAGLQSMMRQFQQGAAGNMKGM 498
Score = 29.1 bits (66), Expect = 7.8
Identities = 14/68 (20%), Positives = 17/68 (25%), Gaps = 8/68 (11%)
Query: 534 SGRPV-EKNRL----DEVK--AQVAAGIPTGPKGGPPPPPPPPGGMGPPPPPMPGMPGPP 586
SG + L + + GI KGG M M M P
Sbjct: 410 SGVSTRDVQELLTQYTKFAQMVKKMGGIKGLFKGGDMSKNVSQSQMAKLNQQMAKMMDPR 469
Query: 587 PPP-MPEM 593
M M
Sbjct: 470 VLHHMGGM 477
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix,
structural; 1.70A {Homo sapiens}
Length = 86
Score = 31.0 bits (71), Expect = 0.31
Identities = 14/52 (26%), Positives = 28/52 (53%), Gaps = 5/52 (9%)
Query: 490 AEKSKTEEDRR-----VEDLSAKLEEAIMLRQEAEAKLVQAQKTLEDLSSGR 536
+K++ E +R + L KL+E ++ R+EAE L ++ +++ S R
Sbjct: 14 NDKARVEVERDNLAEDIMRLREKLQEEMLQREEAENTLQSFRQDVDNASLAR 65
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp
contractIle protein-transport protein complex; 24.00A
{Gallus gallus}
Length = 1080
Score = 33.9 bits (78), Expect = 0.32
Identities = 22/124 (17%), Positives = 48/124 (38%), Gaps = 10/124 (8%)
Query: 1 MDLQDILEEQENMLEKLN---------PEQLNQKFEDMLNDMNLSDEKKEPLRRQPLANK 51
M LQ ++EQ + L +K + + +S+E+ + + L+ +
Sbjct: 931 MQLQRKIDEQNKEYKSLLEKMNNLEITYSTETEKLRSDVERLRMSEEEAKNATNRVLSLQ 990
Query: 52 KKMLLMHYKGTVTSYENKKQENMLEKLNPEQLNQKFEDMLNDMNLSDEKKEPLRRQPLAN 111
+++ + + T E K E +K + Q ++ L +KE L R+
Sbjct: 991 EEIAKLRKELHQTQTEKKTIEEWADKYK-HETEQLVSELKEQNTLLKTEKEELNRRIHDQ 1049
Query: 112 KKKM 115
K++
Sbjct: 1050 AKEI 1053
>3zue_A VP1, capsid structural protein VP60; CAGE design, molecular switch,
protein engineering, structural polymorphism; 10.30A
{Rabbit hemorrhagic disease virus}
Length = 579
Score = 33.4 bits (75), Expect = 0.36
Identities = 6/67 (8%), Positives = 11/67 (16%), Gaps = 6/67 (8%)
Query: 551 AAGIPTGPKGGPPPPPPPPGGMGPP------PPPMPGMPGPPPPPMPEMYTDCHKNIING 604
A P G G PG + ++
Sbjct: 5 ARTAPQGEAAGTATTASVPGTTTDGLDPGVVATTSVVTAENSSASIATAGIGGPPQQVDQ 64
Query: 605 KQACEEV 611
++
Sbjct: 65 QETWRTN 71
>3i2d_A E3 SUMO-protein ligase SIZ1; signal transduction, replication, ring
E3, PIAS, ubiquitin, UBC9, metal-binding, nucleus; 2.60A
{Saccharomyces cerevisiae}
Length = 371
Score = 33.4 bits (75), Expect = 0.37
Identities = 5/46 (10%), Positives = 7/46 (15%)
Query: 546 VKAQVAAGIPTGPKGGPPPPPPPPGGMGPPPPPMPGMPGPPPPPMP 591
+ A + P P PP
Sbjct: 5 LSAITVRSMEGPPTVQQQSPSVIRQSPTQRRKTSTTSSTSRAPPPT 50
Score = 32.2 bits (72), Expect = 0.71
Identities = 8/43 (18%), Positives = 10/43 (23%)
Query: 553 GIPTGPKGGPPPPPPPPGGMGPPPPPMPGMPGPPPPPMPEMYT 595
G PT + P P PPP +
Sbjct: 15 GPPTVQQQSPSVIRQSPTQRRKTSTTSSTSRAPPPTNPDASSS 57
Score = 31.4 bits (70), Expect = 1.3
Identities = 6/42 (14%), Positives = 9/42 (21%)
Query: 555 PTGPKGGPPPPPPPPGGMGPPPPPMPGMPGPPPPPMPEMYTD 596
P + P PPP P+ +
Sbjct: 16 PPTVQQQSPSVIRQSPTQRRKTSTTSSTSRAPPPTNPDASSS 57
>1twf_A B220, DNA-directed RNA polymerase II largest subunit; transcription,
mRNA, multiprotein complex; HET: UTP; 2.30A
{Saccharomyces cerevisiae} SCOP: e.29.1.2 PDB: 1i3q_A
1i6h_A 1k83_A* 1nik_A 1nt9_A 1pqv_A 1r5u_A 1r9s_A*
1r9t_A* 1sfo_A* 1twa_A* 1twc_A* 1i50_A* 1twg_A* 1twh_A*
1wcm_A 1y1v_A 1y1w_A 1y1y_A 1y77_A* ...
Length = 1733
Score = 33.5 bits (76), Expect = 0.38
Identities = 11/40 (27%), Positives = 11/40 (27%)
Query: 552 AGIPTGPKGGPPPPPPPPGGMGPPPPPMPGMPGPPPPPMP 591
AG T G P G P PG P P
Sbjct: 1505 AGGFTAYGGADYGEATSPFGAYGEAPTSPGFGVSSPGFSP 1544
Score = 30.4 bits (68), Expect = 3.6
Identities = 11/37 (29%), Positives = 11/37 (29%)
Query: 551 AAGIPTGPKGGPPPPPPPPGGMGPPPPPMPGMPGPPP 587
G T P G P PG P P P P
Sbjct: 1515 DYGEATSPFGAYGEAPTSPGFGVSSPGFSPTSPTYSP 1551
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative,
no structural genomics consortium, NESG, structural
protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Length = 119
Score = 31.4 bits (72), Expect = 0.41
Identities = 14/52 (26%), Positives = 28/52 (53%), Gaps = 5/52 (9%)
Query: 490 AEKSKTEEDRR-----VEDLSAKLEEAIMLRQEAEAKLVQAQKTLEDLSSGR 536
+K++ E +R + L KL+E ++ R+EAE L ++ +++ S R
Sbjct: 34 NDKARVEVERDNLAEDIMRLREKLQEEMLQREEAENTLQSFRQDVDNASLAR 85
>2uv9_A Fatty acid synthase alpha subunits; fungal, dehydratase, enoyl
reductase, ketoacyl synthase, ketoacyl reductase; 3.1A
{Thermomyces lanuginosus} PDB: 2uvb_A*
Length = 1878
Score = 33.4 bits (76), Expect = 0.44
Identities = 12/48 (25%), Positives = 13/48 (27%)
Query: 544 DEVKAQVAAGIPTGPKGGPPPPPPPPGGMGPPPPPMPGMPGPPPPPMP 591
DE + AA P P P P P P P P
Sbjct: 97 DEPEPTPAAASSADAAPAAAPAAPAAPAAAPAPAPASAGPAAPVQDAP 144
Score = 33.0 bits (75), Expect = 0.58
Identities = 12/78 (15%), Positives = 19/78 (24%), Gaps = 12/78 (15%)
Query: 525 AQKTL------EDLSSGRPVE-----KNRLDEVKAQVAAGIPTGPKGGPPPPPPPPGGMG 573
A++TL D ++ + K+ E+ V
Sbjct: 57 ARRTLQSKYEAYDAATSVQRQILCYCKDA-KEIYYDVEPIEDEPEPTPAAASSADAAPAA 115
Query: 574 PPPPPMPGMPGPPPPPMP 591
P P P P P
Sbjct: 116 APAAPAAPAAAPAPAPAS 133
Score = 32.2 bits (73), Expect = 1.1
Identities = 10/45 (22%), Positives = 13/45 (28%)
Query: 545 EVKAQVAAGIPTGPKGGPPPPPPPPGGMGPPPPPMPGMPGPPPPP 589
E + + + P P P P P P GP P
Sbjct: 96 EDEPEPTPAAASSADAAPAAAPAAPAAPAAAPAPAPASAGPAAPV 140
>2g5d_A GNA33; hydrolase, beta barrel; 1.95A {Neisseria gonorrhoeae fa
1090} SCOP: b.52.1.4 PDB: 2g6g_A
Length = 422
Score = 33.0 bits (74), Expect = 0.47
Identities = 8/38 (21%), Positives = 10/38 (26%)
Query: 554 IPTGPKGGPPPPPPPPGGMGPPPPPMPGMPGPPPPPMP 591
I T P+ P G P P + G
Sbjct: 7 IQTFPQPDTSVINGPDRPAGIPDPAGTTVAGGGAVYTV 44
Score = 32.6 bits (73), Expect = 0.69
Identities = 7/36 (19%), Positives = 12/36 (33%), Gaps = 1/36 (2%)
Query: 556 TGPKGGPPPPPPPPGGMGPPPPPMPGMPGPPPPPMP 591
+ + P P + P P G+P P +
Sbjct: 2 SQSRSIQTFPQPDTSVINGPDRP-AGIPDPAGTTVA 36
Score = 31.1 bits (69), Expect = 2.0
Identities = 7/44 (15%), Positives = 10/44 (22%)
Query: 548 AQVAAGIPTGPKGGPPPPPPPPGGMGPPPPPMPGMPGPPPPPMP 591
+ P P P G+ P G +P
Sbjct: 3 QSRSIQTFPQPDTSVINGPDRPAGIPDPAGTTVAGGGAVYTVVP 46
>3aqq_A Calcium-regulated heat stable protein 1; compact beta-barrel, cold
shock domain, ssDNA binding, DNA B protein; 2.80A {Homo
sapiens}
Length = 147
Score = 31.5 bits (71), Expect = 0.53
Identities = 7/37 (18%), Positives = 8/37 (21%)
Query: 555 PTGPKGGPPPPPPPPGGMGPPPPPMPGMPGPPPPPMP 591
P P P P P P+P
Sbjct: 8 PPQPPTHQASVGLLDTPRSRERSPSPLRGNVVPSPLP 44
Score = 30.8 bits (69), Expect = 1.0
Identities = 9/29 (31%), Positives = 10/29 (34%)
Query: 562 PPPPPPPPGGMGPPPPPMPGMPGPPPPPM 590
PPPP PP P P P+
Sbjct: 6 PPPPQPPTHQASVGLLDTPRSRERSPSPL 34
Score = 29.2 bits (65), Expect = 2.9
Identities = 9/30 (30%), Positives = 10/30 (33%), Gaps = 1/30 (3%)
Query: 562 PPPPPPPPGGMGPPPPPMPGMPGPPPPPMP 591
PPPPP PP + P P
Sbjct: 5 PPPPPQPPTHQ-ASVGLLDTPRSRERSPSP 33
>1tzp_A Penicillin-insensitive murein endopeptidase; LAS enzyme,
metallopeptidase, peptidoglycan hydrolase; 1.40A
{Escherichia coli} SCOP: d.65.1.3 PDB: 1u10_A
Length = 255
Score = 32.3 bits (73), Expect = 0.53
Identities = 28/154 (18%), Positives = 46/154 (29%), Gaps = 28/154 (18%)
Query: 464 HRGGCDPDFRSSRRFQLDVQPLVEHLAEKSK-TEEDRRVEDLSAKLEEAIMLRQEAEAKL 522
H+ G D D + + + + V K E +++ A+ K
Sbjct: 94 HQTGLDVDIFLQLPKTRWTSAQLLRPQALDLVSRDGKHVVSTLWKPEIFSLIKLAAQDKD 153
Query: 523 VQ-------AQKTLEDLSSGRPVEKNRLDEVKAQ--------VAAGIPTGPKGGPPPPPP 567
V ++ L + +++ L +V+ V P P P
Sbjct: 154 VTRIFVNPAIKQQLCLDAGT---DRDWLRKVRPWFQHRAHMHVRLRCPADSLECEDQPLP 210
Query: 568 PPG-GMG--------PPPPPMPGMPGPPPPPMPE 592
P G G G PP P PPP+P
Sbjct: 211 PSGDGCGAELQSWFEPPKPGTTKPEKKTPPPLPP 244
>1mv3_A MYC box dependent interacting protein 1; tumor suppressor,
endocytosis/exocytosis complex; NMR {Homo sapiens} SCOP:
b.34.2.1
Length = 213
Score = 32.4 bits (72), Expect = 0.54
Identities = 14/45 (31%), Positives = 16/45 (35%), Gaps = 5/45 (11%)
Query: 553 GIPTGPKGGPPPPPPPPGGMGPPPPPMPGMP-----GPPPPPMPE 592
G P P P G P +P P GPP PP P+
Sbjct: 2 GSPAATPEIRVNHEPEPAGGATPGATLPKSPSQLRKGPPVPPPPK 46
Score = 32.0 bits (71), Expect = 0.75
Identities = 10/39 (25%), Positives = 11/39 (28%)
Query: 555 PTGPKGGPPPPPPPPGGMGPPPPPMPGMPGPPPPPMPEM 593
P GG P P P P P P E+
Sbjct: 15 EPEPAGGATPGATLPKSPSQLRKGPPVPPPPKHTPSKEV 53
Score = 31.2 bits (69), Expect = 1.0
Identities = 10/73 (13%), Positives = 14/73 (19%)
Query: 524 QAQKTLEDLSSGRPVEKNRLDEVKAQVAAGIPTGPKGGPPPPPPPPGGMGPPPPPMPGMP 583
K+ L G PV +V P P
Sbjct: 27 TLPKSPSQLRKGPPVPPPPKHTPSKEVKQEQILSLFEDTFVPEISVTTPSQPAEASEVAG 86
Query: 584 GPPPPPMPEMYTD 596
G P + +
Sbjct: 87 GTQPAAGAQEPGE 99
Score = 29.3 bits (64), Expect = 4.7
Identities = 5/45 (11%), Positives = 11/45 (24%)
Query: 549 QVAAGIPTGPKGGPPPPPPPPGGMGPPPPPMPGMPGPPPPPMPEM 593
+++ P+ P G P +P +
Sbjct: 69 EISVTTPSQPAEASEVAGGTQPAAGAQEPGETAASEAASSSLPAV 113
Score = 29.3 bits (64), Expect = 4.9
Identities = 9/42 (21%), Positives = 12/42 (28%)
Query: 554 IPTGPKGGPPPPPPPPGGMGPPPPPMPGMPGPPPPPMPEMYT 595
G P P GPP PP P ++ +
Sbjct: 19 AGGATPGATLPKSPSQLRKGPPVPPPPKHTPSKEVKQEQILS 60
Score = 29.3 bits (64), Expect = 5.2
Identities = 8/38 (21%), Positives = 10/38 (26%)
Query: 555 PTGPKGGPPPPPPPPGGMGPPPPPMPGMPGPPPPPMPE 592
T PK PP P P + + E
Sbjct: 26 ATLPKSPSQLRKGPPVPPPPKHTPSKEVKQEQILSLFE 63
Score = 28.5 bits (62), Expect = 8.4
Identities = 4/39 (10%), Positives = 5/39 (12%)
Query: 555 PTGPKGGPPPPPPPPGGMGPPPPPMPGMPGPPPPPMPEM 593
+ GG P P
Sbjct: 81 ASEVAGGTQPAAGAQEPGETAASEAASSSLPAVVVETFP 119
Score = 28.5 bits (62), Expect = 8.5
Identities = 6/50 (12%), Positives = 8/50 (16%)
Query: 547 KAQVAAGIPTGPKGGPPPPPPPPGGMGPPPPPMPGMPGPPPPPMPEMYTD 596
+ V P G P P + T
Sbjct: 69 EISVTTPSQPAEASEVAGGTQPAAGAQEPGETAASEAASSSLPAVVVETF 118
Score = 28.5 bits (62), Expect = 9.3
Identities = 6/70 (8%), Positives = 14/70 (20%)
Query: 526 QKTLEDLSSGRPVEKNRLDEVKAQVAAGIPTGPKGGPPPPPPPPGGMGPPPPPMPGMPGP 585
K ++ E + E+ + + P
Sbjct: 50 SKEVKQEQILSLFEDTFVPEISVTTPSQPAEASEVAGGTQPAAGAQEPGETAASEAASSS 109
Query: 586 PPPPMPEMYT 595
P + E +
Sbjct: 110 LPAVVVETFP 119
>1kxf_A Sindbis virus capsid protein; chymotrypsin-like serine proteinase,
wild type, viral protein; 2.38A {Sindbis virus} SCOP:
b.47.1.3 PDB: 1ld4_A 3j0f_A
Length = 264
Score = 32.5 bits (73), Expect = 0.57
Identities = 12/57 (21%), Positives = 20/57 (35%)
Query: 536 RPVEKNRLDEVKAQVAAGIPTGPKGGPPPPPPPPGGMGPPPPPMPGMPGPPPPPMPE 592
R +++ ++ V+A + P P PP P P P P P +
Sbjct: 35 RNGLASQIQQLTTAVSALVIGQATRPQNPRPRPPPRQKKQAPKQPPKPKKPKPQEKK 91
Score = 30.9 bits (69), Expect = 1.8
Identities = 6/37 (16%), Positives = 6/37 (16%)
Query: 555 PTGPKGGPPPPPPPPGGMGPPPPPMPGMPGPPPPPMP 591
P P P P P P
Sbjct: 64 RPRPPPRQKKQAPKQPPKPKKPKPQEKKKKQPAKTKP 100
Score = 29.0 bits (64), Expect = 6.6
Identities = 7/28 (25%), Positives = 8/28 (28%)
Query: 565 PPPPPGGMGPPPPPMPGMPGPPPPPMPE 592
P P P M P P P +
Sbjct: 13 PFPAPTAMWRPRRRRQAAPMPARNGLAS 40
Score = 28.6 bits (63), Expect = 8.5
Identities = 8/35 (22%), Positives = 9/35 (25%)
Query: 558 PKGGPPPPPPPPGGMGPPPPPMPGMPGPPPPPMPE 592
P P PPP P P P +
Sbjct: 59 RPQNPRPRPPPRQKKQAPKQPPKPKKPKPQEKKKK 93
>2qyb_A Membrane protein, putative; GAF domain, domain of putative membrane
protein, PSI-2, MCSG structural genomics; 2.40A
{Geobacter sulfurreducens pca}
Length = 181
Score = 31.6 bits (72), Expect = 0.62
Identities = 18/107 (16%), Positives = 38/107 (35%), Gaps = 11/107 (10%)
Query: 234 EALTIVARSLDPNK--PTVMLEAVKVL----AAVCLIPPDGHDKVIKAITMSGELKGKER 287
A I+ R+LD ++ +K A + L+ G +V +
Sbjct: 7 RASEIMNRTLDLQIIMDDLLNLLLKEFKLDLAVIRLVDEKGVLRVRSYSGKGIAGIAGKD 66
Query: 288 FQPVVQGLMVKGNNEALRTACLQLINAIVATPDDLEFRLHLRNEIMR 334
++P ++ + EA + LQ +N R ++ E ++
Sbjct: 67 WEPEIETYI----GEAFLSNRLQFVNDT-QYMTKPLTRELMQKEGIK 108
>3npi_A TETR family regulatory protein; structural genomics, joint center
for structural genomics, J protein structure initiative,
PSI; 2.96A {Corynebacterium diphtheriae}
Length = 251
Score = 32.1 bits (73), Expect = 0.72
Identities = 15/136 (11%), Positives = 31/136 (22%), Gaps = 18/136 (13%)
Query: 469 DPDFRSSRRFQLDVQPLVEHLAEKSKTEEDRRVED-LSAKLEEAI---MLRQEAEAKLVQ 524
P+ R Q++ +AE S + + L L R A+ V
Sbjct: 109 HPEA--VRMLQMENLHHYGKVAEASPLSDQSAITLQLDRLLMLGQDAGAFRPGISAQDVF 166
Query: 525 ------------AQKTLEDLSSGRPVEKNRLDEVKAQVAAGIPTGPKGGPPPPPPPPGGM 572
++ T +L + + D ++ +
Sbjct: 167 TLIASIAVFRINSRSTTLNLYGIDMMNGDNTDGMRRMAVDTVLAFLTSNLKSADEDSYLS 226
Query: 573 GPPPPPMPGMPGPPPP 588
P +
Sbjct: 227 RPLLSTVTEHVDEEGS 242
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 31.1 bits (69), Expect = 0.78
Identities = 4/25 (16%), Positives = 13/25 (52%), Gaps = 5/25 (20%)
Query: 700 QNSIRQMENNIKNLETDIQNCKQAP 724
+ ++++++ ++K D AP
Sbjct: 19 KQALKKLQASLKLYADD-----SAP 38
>2owb_A Serine/threonine-protein kinase PLK1; catalytic domain, POLO-like
kinase1, transfera; HET: 626; 2.10A {Homo sapiens} PDB:
2ou7_A* 3fc2_A* 3thb_A*
Length = 335
Score = 31.9 bits (73), Expect = 0.82
Identities = 11/36 (30%), Positives = 14/36 (38%)
Query: 561 GPPPPPPPPGGMGPPPPPMPGMPGPPPPPMPEMYTD 596
GP P P G+ P PP +PE+ D
Sbjct: 1 GPAPADPGKAGVPGVAAPGAPAAAPPAKEIPEVLVD 36
>1ihm_A Capsid protein; beta-barrel, EF-TU-like domain caliciviridae, T=3
icosahedra icosahedral virus; 3.40A {Norwalk virus}
SCOP: b.121.4.3
Length = 530
Score = 32.1 bits (72), Expect = 0.84
Identities = 5/35 (14%), Positives = 7/35 (20%)
Query: 561 GPPPPPPPPGGMGPPPPPMPGMPGPPPPPMPEMYT 595
G G P + P+ T
Sbjct: 7 DATSSVDGASGAGQLVPEVNASDPLAMDPVAGSST 41
>1qoz_A AXE, acetyl xylan esterase; hydrolase, xylan degradation; HET: NAG;
1.90A {Trichoderma reesei} SCOP: c.69.1.30
Length = 207
Score = 31.6 bits (71), Expect = 0.88
Identities = 12/66 (18%), Positives = 20/66 (30%), Gaps = 5/66 (7%)
Query: 533 SSGRPVEKNRLDEVKAQVAAGIPTGPKGGPPPPPPPPGGMGPPPPPMPGMPGPPPPPMPE 592
++ P+ + VKA + G P G P P G P +
Sbjct: 112 NTAVPLTAGAVSAVKAAIFMGDPRNIHGLPYNVGTCTTQGFDARP-----AGFVCPSASK 166
Query: 593 MYTDCH 598
+ + C
Sbjct: 167 IKSYCD 172
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA
complex, RNA binding protein/RNA complex; NMR {Homo
sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Length = 229
Score = 31.5 bits (71), Expect = 0.88
Identities = 5/32 (15%), Positives = 7/32 (21%)
Query: 560 GGPPPPPPPPGGMGPPPPPMPGMPGPPPPPMP 591
G G+ P M + P
Sbjct: 2 GSSHHHHHHSSGLVPRGSHMGRIAIPGLAGAG 33
>3ghg_B Fibrinogen beta chain; triple-stranded coiled coil, beta sheets,
alpha helices, AMY amyloidosis, blood coagulation,
disease mutation, glycoprot phosphoprotein; HET: NAG NDG
BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_B*
1deq_B 2a45_H*
Length = 461
Score = 31.9 bits (72), Expect = 1.0
Identities = 29/195 (14%), Positives = 59/195 (30%), Gaps = 36/195 (18%)
Query: 536 RPVEKNRLDEVKAQVAAGIPTGPKGGPPPPPPPPGGMGPPPPPMPGMP----------GP 585
RP++K R P P PPP GG P G
Sbjct: 17 RPLDKKR------------EEAPSLRPAPPPISGGGYRARPAKAAATQKKVERKAPDAGG 64
Query: 586 PPPPMPEMYTDCHKNIINGKQACEEVKQSKKLAKILELILLMGNYMNSGSRNGGAFGFEI 645
P++ C + ++ + + L + + +S S
Sbjct: 65 CLHADPDLGVLCPTGCQLQEALLQQERPIRNSVDELNNNVEAVSQTSSSSFQ-------- 116
Query: 646 NFLTKLSSTKDIENKT-TLLHYLVDTIEQKFPECLKFGDELLH-VDRAARVSTDVIQNSI 703
+ KD+ K + + + + E K + V+ + V+++ +
Sbjct: 117 ----YMYLLKDLWQKRQKQVKDNENVVNEYSSELEKHQLYIDETVNSNIPTNLRVLRSIL 172
Query: 704 RQMENNIKNLETDIQ 718
+ + I+ LE+D+
Sbjct: 173 ENLRSKIQKLESDVS 187
>2gj7_F Glycoprotein E; FC receptor, low resolution, immune
system-virus-viral prote complex; HET: NAG BMA MAN GAL
FUC; 5.00A {Human herpesvirus 1} SCOP: b.1.1.1
Length = 401
Score = 32.0 bits (71), Expect = 1.1
Identities = 11/54 (20%), Positives = 13/54 (24%)
Query: 536 RPVEKNRLDEVKAQVAAGIPTGPKGGPPPPPPPPGGMGPPPPPMPGMPGPPPPP 589
+P A + P G PPPP P P P
Sbjct: 142 QPAPVPTPPPTPADYDEDDNDEGEDESLAGTPASGTPRLPPPPAPPRSWPSAPE 195
>3ruv_A Chaperonin, CPN; double-ring, protein folding machinery, group II
chaperonin, binding, chaperone; HET: ANP; 2.24A
{Methanococcus maripaludis} PDB: 3rus_A* 3ruw_A* 3ruq_A*
3los_A 3kfb_A* 3izi_A 3izj_A 3izm_A 3izh_A 3kfe_A*
3iyf_A* 3kfk_A* 3izk_A 3izl_A 3j03_A 3izn_A 3j02_A
Length = 543
Score = 31.8 bits (73), Expect = 1.2
Identities = 8/24 (33%), Positives = 8/24 (33%)
Query: 561 GPPPPPPPPGGMGPPPPPMPGMPG 584
P G P M GMPG
Sbjct: 518 AEKLRGAPDMGDMGGMPGMGGMPG 541
>3oii_A Essential for mitotic growth 1; EMG1, scnep1, spout, ribosome
biogenesis, methyltransferase, processing, ribosomal
protein; HET: SAH; 1.85A {Saccharomyces cerevisiae} PDB:
3oij_A* 3oin_A* 2v3j_A 2v3k_A*
Length = 253
Score = 31.1 bits (70), Expect = 1.2
Identities = 17/112 (15%), Positives = 28/112 (25%), Gaps = 5/112 (4%)
Query: 568 PPGGMGPPPPPMPGMPGPPPPPMPEMYTDCHKNIINGKQAC-EEVKQSKKLAKILELILL 626
G + PP + + I+ A E K S + +LL
Sbjct: 10 DALKGGDQKALPASLVPQAPPVLTSKDKITKRMIVVLAMASLETHKISSNGPGGDKYVLL 69
Query: 627 ----MGNYMNSGSRNGGAFGFEINFLTKLSSTKDIENKTTLLHYLVDTIEQK 674
+ R+ +I L+ NK L + T
Sbjct: 70 NCDDHQGLLKKMGRDISEARPDITHQCLLTLLDSPINKAGKLQVYIQTSRGI 121
>3gmj_D Protein mothers against DPP; MH2,SMAD,MAD, cytoplasm, developmental
protein, nucleus, phosphoprotein, transcription; 2.80A
{Drosophila melanogaster}
Length = 245
Score = 31.3 bits (70), Expect = 1.2
Identities = 9/39 (23%), Positives = 12/39 (30%), Gaps = 3/39 (7%)
Query: 561 GPPPPPPPPGGMGPPPPPMPG---MPGPPPPPMPEMYTD 596
G PPP P G P G + Y++
Sbjct: 9 GTPPPAYSPSEDGNSNNPNDGGQLLDAQMGDVAQVSYSE 47
>1zy8_K Pyruvate dehydrogenase protein X component, mitochondrial; human,
dihydrolipoamide dehydrogenase, dihydrolipoyl
dehydrogenase; HET: FAD; 2.59A {Homo sapiens}
Length = 229
Score = 31.3 bits (71), Expect = 1.2
Identities = 10/49 (20%), Positives = 12/49 (24%), Gaps = 1/49 (2%)
Query: 546 VKAQVAAGIPTGPKGGPPPPPPPPGGMGPPPPPMP-GMPGPPPPPMPEM 593
K + G P P P P P P P P +
Sbjct: 159 TKEDALKLVQLKQTGKITESRPTPAPTATPTAPSPLQATSGPSYPRPVI 207
>2wd6_A Agglutinin receptor; cell adhesion, secreted, V-region, cell WALL,
AG I/II protei surface adhesin, peptidoglycan-anchor;
2.30A {Streptococcus gordonii}
Length = 349
Score = 31.3 bits (70), Expect = 1.3
Identities = 15/46 (32%), Positives = 17/46 (36%), Gaps = 1/46 (2%)
Query: 550 VAAGIPTGPKGGPPPPPPPPGGMGPPPPPMPGMPGPPPPPMPEMYT 595
A G+PT P P P P P P P P P P + T
Sbjct: 304 NAIGVPTKP-VAPTAPTQPMYETEKPLEPAPVAPSYENEPTPPVKT 348
>3alr_A Nanos protein; zinc-finger, translational repression, RNA, 3'-UTR,
metal BI protein; 2.10A {Danio rerio}
Length = 106
Score = 29.7 bits (66), Expect = 1.3
Identities = 12/45 (26%), Positives = 14/45 (31%), Gaps = 1/45 (2%)
Query: 557 GPKGGPPPPPPPPGGMGPPPPPMPGMPGPPPPPMPEMY-TDCHKN 600
GP G P P P PG P P + + C N
Sbjct: 1 GPLGSESPSGPIRSRDSPEQNTSPGGGKPKSSPAERKFCSFCKHN 45
>1o9i_A Pseudocatalase; oxidoreductase, hexamer, dimanganese catalase,
metalloenzyme, preoxidase; HET: MES; 1.33A
{Lactobacillus plantarum} SCOP: a.25.1.3 PDB: 1jkv_A
1jku_A
Length = 266
Score = 31.2 bits (70), Expect = 1.5
Identities = 8/45 (17%), Positives = 11/45 (24%), Gaps = 5/45 (11%)
Query: 556 TGPKGGPPPPPPPPGGMG----PPPPPMPGMPGPPPPPMPEMYTD 596
G G P M G+P P P ++
Sbjct: 221 DGDGSKAFEGQVAKDGEKFTYQENPEAMGGIPHIKPGD-PRLHNH 264
>3kyh_C MRNA-capping enzyme subunit alpha; 5' modification, triphosphatase,
guanylyltransferase, complex, hydrolase, mRNA
processing, nucleus; 3.00A {Saccharomyces cerevisiae}
Length = 461
Score = 31.3 bits (69), Expect = 1.7
Identities = 16/62 (25%), Positives = 20/62 (32%), Gaps = 5/62 (8%)
Query: 528 TLEDLSSGRPVEKNRLDEVKAQVAAGIPTGPKGGPPPPPPPPGGMGPPPPPMPGMPGPPP 587
+LEDL K DE +A +A G G P P + P P
Sbjct: 395 SLEDLEEIVGDIKRCWDERRANMAGG-----SGRPLPSQSQNATLSTSKPVHSQPPSNDK 449
Query: 588 PP 589
P
Sbjct: 450 EP 451
>1eys_C Photosynthetic reaction center; membrane protein complex, electron
transport; HET: BGL BCL BPH MQ8 HEM CRT LDA PEF; 2.20A
{Thermochromatium tepidum} SCOP: a.138.1.2
Length = 382
Score = 31.0 bits (69), Expect = 1.8
Identities = 8/44 (18%), Positives = 9/44 (20%)
Query: 549 QVAAGIPTGPKGGPPPPPPPPGGMGPPPPPMPGMPGPPPPPMPE 592
A G P P P P P +P
Sbjct: 309 YKTAVTQEALPGSAPASEAAPAAATEAAPEAPAQEVPAAEAVPA 352
Score = 30.2 bits (67), Expect = 2.9
Identities = 9/42 (21%), Positives = 10/42 (23%)
Query: 548 AQVAAGIPTGPKGGPPPPPPPPGGMGPPPPPMPGMPGPPPPP 589
AQ+A P K P P P P
Sbjct: 299 AQMAKDYPGLYKTAVTQEALPGSAPASEAAPAAATEAAPEAP 340
Score = 29.1 bits (64), Expect = 6.9
Identities = 8/34 (23%), Positives = 8/34 (23%), Gaps = 1/34 (2%)
Query: 558 PKGGPPPPPPPPGGMGPPPPPMPGMPGPPPPPMP 591
P P PG P P P P
Sbjct: 345 PAAEAVPAAAEPGAAEAAGSVEPA-PVEEVAPAP 377
>2jxb_A T-cell surface glycoprotein CD3 epsilon chain, cytoplasmic protein
NCK2; T-cell receptor, SH3 domain, immunology, SH2
domain; NMR {Homo sapiens}
Length = 86
Score = 28.6 bits (64), Expect = 1.9
Identities = 5/29 (17%), Positives = 7/29 (24%)
Query: 562 PPPPPPPPGGMGPPPPPMPGMPGPPPPPM 590
PPP P P + +
Sbjct: 5 RPPPVPNPDYNSLKKGSLVKNLHMTEEVI 33
Score = 27.9 bits (62), Expect = 3.9
Identities = 5/33 (15%), Positives = 9/33 (27%)
Query: 562 PPPPPPPPGGMGPPPPPMPGMPGPPPPPMPEMY 594
PPP P P + + + +
Sbjct: 6 PPPVPNPDYNSLKKGSLVKNLHMTEEVIVIAKW 38
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide
repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A
{Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3
b.26.1.2 PDB: 2fez_A*
Length = 388
Score = 30.8 bits (70), Expect = 2.0
Identities = 3/34 (8%), Positives = 3/34 (8%)
Query: 558 PKGGPPPPPPPPGGMGPPPPPMPGMPGPPPPPMP 591
P G G
Sbjct: 259 PLDAKKSAKTTAAGTVTVLDQRTMASGQQAVAYL 292
Score = 29.3 bits (66), Expect = 6.5
Identities = 4/50 (8%), Positives = 7/50 (14%), Gaps = 1/50 (2%)
Query: 542 RLDEVKAQVAAGIPTGPKGGPPPPPPPPGGMGPPPPPMPGMPGPPPPPMP 591
L + ++ P K M
Sbjct: 246 TLRALNERILRQQPLDAKKSAKTTAAGTVT-VLDQRTMASGQQAVAYLHD 294
>3m1c_B GL, envelope glycoprotein L; glycoprotein H, GH/GL, envelope
protein, HER simplex virus, disulfide bond, HOST cell
MEMB HOST endosome; HET: NAG XYL; 3.00A {Human
herpesvirus 2}
Length = 204
Score = 30.4 bits (67), Expect = 2.0
Identities = 9/67 (13%), Positives = 17/67 (25%), Gaps = 1/67 (1%)
Query: 526 QKTLEDLSSGRPVEKNRLDEVKAQVAAGIPTGPKGGPPPPPPPPGGM-GPPPPPMPGMPG 584
+T + N + V++ + P PP + PP + G
Sbjct: 135 SRTRRCVGRRDLRPANTTSTWEPPVSSDDEASSQSKPLATQPPVLALSNAPPRRVSPTRG 194
Query: 585 PPPPPMP 591
Sbjct: 195 RRRHTRL 201
>1opk_A P150, C-ABL, proto-oncogene tyrosine-protein kinase ABL1;
transferase; HET: MYR P16; 1.80A {Mus musculus} SCOP:
b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1opl_A* 2fo0_A* 2abl_A
Length = 495
Score = 30.9 bits (70), Expect = 2.1
Identities = 5/38 (13%), Positives = 8/38 (21%)
Query: 555 PTGPKGGPPPPPPPPGGMGPPPPPMPGMPGPPPPPMPE 592
P+ P P G+ P +
Sbjct: 5 PSEALQRPVASDFEPQGLSEAARWNSKENLLAGPSEND 42
>1wcz_A Glutamyl endopeptidase; virulence factor, hydrolase; 2.00A
{Staphylococcus aureus} SCOP: b.47.1.1
Length = 268
Score = 30.4 bits (68), Expect = 2.1
Identities = 10/55 (18%), Positives = 12/55 (21%), Gaps = 1/55 (1%)
Query: 538 VEKNRLDEVKAQVAAGIPTGPKGGPPPPPPPPGGMGPPPPPMPGMPGPPPPPMPE 592
+E P P P P P P P P P +
Sbjct: 210 IEDINFANDDQPNNPDNPDNPNN-PDNPNNPDEPNNPDNPNNPDNPDNGDNNNSD 263
>2bgh_A Vinorine synthase; VS, BAHD, acetyltransferase, auto-rickshaw,
transferase; 2.6A {Rauvolfia serpentina}
Length = 421
Score = 31.0 bits (70), Expect = 2.2
Identities = 7/35 (20%), Positives = 10/35 (28%)
Query: 559 KGGPPPPPPPPGGMGPPPPPMPGMPGPPPPPMPEM 593
+G P PP+ P P P +
Sbjct: 180 RGETEIVLPNFDLAARHFPPVDNTPSPELVPDENV 214
>2of7_A Putative TETR-family transcriptional regulator; APC7240,
streptomyces coelicolor A3, structural genomics, PSI-2;
2.30A {Streptomyces coelicolor}
Length = 260
Score = 30.2 bits (68), Expect = 2.4
Identities = 6/43 (13%), Positives = 9/43 (20%), Gaps = 2/43 (4%)
Query: 543 LDEVKAQVAAGIPTGPKGGPPPPPPPPGGMGPPPPPMPGMPGP 585
+D + G+P G G P
Sbjct: 217 VDRALDALENGLPAL--RESDRESDREGDRGGHREDRREGPRK 257
>1oht_A CG14704 protein; peptidoglycan-recognition protein-LB isoform 2,
hydrolase; HET: TLA; 2.0A {Drosophila melanogaster}
SCOP: d.118.1.1
Length = 215
Score = 30.3 bits (68), Expect = 2.5
Identities = 8/39 (20%), Positives = 10/39 (25%)
Query: 555 PTGPKGGPPPPPPPPGGMGPPPPPMPGMPGPPPPPMPEM 593
G P P P P PP P++
Sbjct: 177 HINDTEGVSSTTAPVVPHVHPQAAAPQKPHQSPPAAPKV 215
>1x50_A Galectin-4; GAL-BIND lectin, sugar binding, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 164
Score = 29.6 bits (66), Expect = 2.5
Identities = 9/33 (27%), Positives = 11/33 (33%), Gaps = 7/33 (21%)
Query: 561 GPPPPPPPPGGMGPPPPPMPGMPGPP--PPPMP 591
G +P M GPP PP+P
Sbjct: 1 GSSGSSGHQ-----QLNSLPTMEGPPTFNPPVP 28
>3dva_I Dihydrolipoyllysine-residue acetyltransferase component of pyruvate
dehydrogenase...; oxidoreductase, multienzyme complex;
HET: TPW; 2.35A {Bacillus stearothermophilus} PDB:
3dv0_I* 3duf_I* 1b5s_A 1lab_A 1lac_A 1w3d_A
Length = 428
Score = 30.7 bits (70), Expect = 2.6
Identities = 5/43 (11%), Positives = 5/43 (11%)
Query: 550 VAAGIPTGPKGGPPPPPPPPGGMGPPPPPMPGMPGPPPPPMPE 592
KG P P E
Sbjct: 78 APGYENMTFKGQEQEEAKKEEKTETVSKEEKVDAVAPNAPAAE 120
Score = 29.1 bits (66), Expect = 8.0
Identities = 3/48 (6%), Positives = 5/48 (10%)
Query: 545 EVKAQVAAGIPTGPKGGPPPPPPPPGGMGPPPPPMPGMPGPPPPPMPE 592
+ + A P P
Sbjct: 71 QTLITLDAPGYENMTFKGQEQEEAKKEEKTETVSKEEKVDAVAPNAPA 118
>3nwa_A GB, GB-1, GB1, envelope glycoprotein B; coiled-coil, membrane
fusion, viral P glycoprotein B, HSV-1, membrane; HET:
NAG; 2.26A {Human herpesvirus 1} PDB: 3nwf_A* 3nw8_A*
3nwd_A*
Length = 703
Score = 30.7 bits (69), Expect = 2.7
Identities = 11/38 (28%), Positives = 12/38 (31%), Gaps = 1/38 (2%)
Query: 555 PTGPKGGPPPPPPPPGGMGPPPPPMPGMPGPPPPPMPE 592
PT P P G P P P G P P+
Sbjct: 5 PTSPGT-PGVAAATQAANGGPATPAPPALGAAPTGDPK 41
Score = 30.3 bits (68), Expect = 3.8
Identities = 14/46 (30%), Positives = 14/46 (30%)
Query: 551 AAGIPTGPKGGPPPPPPPPGGMGPPPPPMPGMPGPPPPPMPEMYTD 596
A GGP P PP G P P P P P P
Sbjct: 13 VAAATQAANGGPATPAPPALGAAPTGDPKPKKNKKPKNPTPPRPAG 58
>3d5k_A OPRM, outer membrane protein OPRM; channel, beta-alpha-barrel,
antibiotic RES lipoprotein, palmitate, transmemb
transport; 2.40A {Pseudomonas aeruginosa} PDB: 1wp1_A
Length = 474
Score = 30.8 bits (70), Expect = 2.7
Identities = 14/60 (23%), Positives = 25/60 (41%), Gaps = 2/60 (3%)
Query: 514 LRQEAEAKLVQAQKTLEDLSSGRPVEKNRLDE-VKAQVAAGIPTGPKGGPPPPPPPPGGM 572
LRQ A+ + A+ TL + ++N L + + + A +P G P G+
Sbjct: 206 LRQ-AQTAVEGARATLAQYTRLVAQDQNALVLLLGSGIPANLPQGLGLDQTLLTEVPAGL 264
>1kp8_A Groel protein; chaperonin, assisted protein folding, chaperone;
HET: ATP; 2.00A {Escherichia coli} SCOP: a.129.1.1
c.8.5.1 d.56.1.1 PDB: 1gr5_A 2c7e_A* 1grl_A 1oel_A
1xck_A 1gru_A 1mnf_A 1aon_A 2c7c_A 2c7d_A 2cgt_A 2nwc_A
3e76_A* 2eu1_A 1j4z_A 1kpo_O 1sx3_A* 3c9v_A 1ss8_A
3cau_A ...
Length = 547
Score = 30.6 bits (70), Expect = 2.8
Identities = 8/22 (36%), Positives = 8/22 (36%), Gaps = 4/22 (18%)
Query: 563 PPPPPPPGGMGPPPPPMPGMPG 584
GGMG M GM G
Sbjct: 528 AADLGAAGGMGG----MGGMGG 545
>3fpp_A Macrolide-specific efflux protein MACA; hexameric assembly,
membrane fusion protein, drug efflux pump, periplasmic
protein; 2.99A {Escherichia coli}
Length = 341
Score = 30.4 bits (69), Expect = 2.8
Identities = 17/67 (25%), Positives = 32/67 (47%), Gaps = 3/67 (4%)
Query: 489 LAEKSKTEEDRRVEDLSAKLEEAIMLRQEAEAKLVQAQKTLE---DLSSGRPVEKNRLDE 545
L + + +++++ A L E RQ+AEA+L A+ T L+ + V + LD
Sbjct: 59 LGVIDPEQAENQIKEVEATLMELRAQRQQAEAELKLARVTYSRQQRLAQTQAVSQQDLDN 118
Query: 546 VKAQVAA 552
++A
Sbjct: 119 AATEMAV 125
>1ud0_A HSC70, 70 kDa heat-shock-like protein; chaperone; 3.45A {Rattus
norvegicus} SCOP: a.8.4.1
Length = 113
Score = 28.8 bits (64), Expect = 2.9
Identities = 24/103 (23%), Positives = 33/103 (32%), Gaps = 22/103 (21%)
Query: 487 EHLAEKSKTEEDRRVEDLSAKLEEAIMLRQEAEAKLVQA-QKTLEDLSSGRPVEKNRLDE 545
E L K E+ +++ D ++ + Q AE + + QK LE
Sbjct: 23 EKLQGKINDEDKQKILDKCNEIISWLDKNQTAEKEEFEHQQKELEK-------------- 68
Query: 546 VKAQVAAGIPT---GPKGGPPPPPPPPGGMGPPPPPMPGMPGP 585
V I T GG P P G PP GP
Sbjct: 69 ----VCNPIITKLYQSAGGMPGGMPGGFPGGGAPPSGGASSGP 107
>1igy_B IGG1 intact antibody MAB61.1.3; intact immunoglobulin, V region, C
region, hinge region, immunoglobulin; HET: NAG FUL NDG
BMA MAN GAL FUC; 3.20A {Mus musculus} SCOP: b.1.1.1
b.1.1.2 b.1.1.2 b.1.1.2
Length = 434
Score = 30.3 bits (68), Expect = 3.0
Identities = 8/38 (21%), Positives = 10/38 (26%), Gaps = 3/38 (7%)
Query: 555 PTGPKGGPPPPPPPPGGMGPPPPPMPGMPGP---PPPP 589
P P G P +P + PP P
Sbjct: 201 PASSTKVDKKIVPRDCGCKPCICTVPEVSSVFIFPPKP 238
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen,
blood clotting; HET: NDG NAG; 2.70A {Gallus gallus}
SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Length = 464
Score = 30.4 bits (68), Expect = 3.0
Identities = 13/199 (6%), Positives = 43/199 (21%), Gaps = 40/199 (20%)
Query: 566 PPPPGGMGPPPPPMPGMPGPPPPPMPEMYTDCHKNIINGKQACEEVKQSKKLAKILELIL 625
P PP G PP + + + +
Sbjct: 29 AAPTLRPVAPPISGTGYQPRPPKQDKQAMKKGPIIYPDAGGCKHPLDE------------ 76
Query: 626 LMGNYMNSGSRNGGAFGFEINFLTKLSSTKDIENKTTLLHYLVDTIEQKFPECLKFGDEL 685
+ T + + + ++ ++ + +
Sbjct: 77 -----------------LGVLCPTGCELQTTLLKQEKTVKPVLRDLKDRV-------AKF 112
Query: 686 LHVDRAARVSTDVIQNSIRQMENNIKNLETDIQNCKQAPVANENDKFLEIMEPFAKEVRQ 745
++I N + + + K+ + + + I + +
Sbjct: 113 SDTSTTMYQYVNMIDNKLVKTQKQRKDNDIILSEYN----TEMELHYNYIKDNLDNNIPS 168
Query: 746 KITLLSNMSKNMMTLYGDL 764
+ +L + ++ L
Sbjct: 169 SLRVLRAVIDSLHKKIQKL 187
>3dbg_A Putative cytochrome P450; cytochrome P450 oxidoreductase, CYP170A1,
molecular mechanism, heme, iron, metal-binding,
monooxygenase; HET: HEM; 2.60A {Streptomyces coelicolor
A3} PDB: 3el3_A*
Length = 467
Score = 30.3 bits (69), Expect = 3.1
Identities = 8/28 (28%), Positives = 10/28 (35%), Gaps = 1/28 (3%)
Query: 556 TGPKGGPPPPPPPPGGMGPPPPPMPGMP 583
P+ P P P PP G+P
Sbjct: 6 VNPETRAPAAPGAPELREPPVAG-GGVP 32
>2coe_A Deoxynucleotidyltransferase, terminal variant; BRCT domain, DNA
polymerase, teminal deoxynucleotidyltransferase,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 120
Score = 28.8 bits (64), Expect = 3.1
Identities = 12/31 (38%), Positives = 16/31 (51%)
Query: 892 DRPMGAERRAQLNRSRSRNGIVITRELSNEV 922
++ MG RRA L R G + ELS+ V
Sbjct: 30 EKKMGTTRRALLMELARRKGFRVENELSDSV 60
>2b1e_A Exocyst complex component EXO70; tethering complex,
endocytosis/exocytosis complex; 2.00A {Saccharomyces
cerevisiae} PDB: 2b7m_A 2pfv_A
Length = 564
Score = 30.5 bits (68), Expect = 3.1
Identities = 32/203 (15%), Positives = 65/203 (32%), Gaps = 23/203 (11%)
Query: 598 HKNIINGKQACEEVKQSKKLAKILELILLMGNYMNSGSRNGGAFGFEINFLTKLSSTKDI 657
H NI + + VK A E+IL G ++ +
Sbjct: 2 HMNIESTLNSVASVKDLANEASKYEIILQKGIN-------------QVGLKQYTQVVHKL 48
Query: 658 ENKTTLLHYLVDTIEQKFPECLKFGDELLHVDRAARVSTDVIQNSIRQMENNIKNLETDI 717
+ +L + + E +F L H+++ + S ++ + N+IK + I
Sbjct: 49 D---DMLEDIQSGQANR-EENSEFHGILTHLEQLIKRSEAQLRVYFISILNSIKPFDPQI 104
Query: 718 QNCKQAPVANENDKFLEIMEPFAKEVRQKITLLSNMSKNMMTLYGDLAEFYTFDKNIYTL 777
K+ P D+ L + ++ + + K + L
Sbjct: 105 NITKKMPFPYYEDQQLGALSWILDYFHG-----NSEGSIIQDILVGERSKL-ILKCMAFL 158
Query: 778 EEFFTDIKTFKDSFYQAWQENIK 800
E F +I T K++ Y+ +
Sbjct: 159 EPFAKEISTAKNAPYEKGSSGMN 181
>1yc9_A VCEC, multidrug resistance protein; outer membrane protein,
multidrug resistanc membrane protein; HET: BOG; 1.80A
{Vibrio cholerae}
Length = 442
Score = 30.4 bits (69), Expect = 3.4
Identities = 13/70 (18%), Positives = 20/70 (28%), Gaps = 9/70 (12%)
Query: 514 LRQEAEAKLVQAQKTLEDLSSGRPVEKNRLDEVKAQVAAGIPTGPKGGPPPPPPPPGGMG 573
+ Q A+A + L + ++KN L AA + GP P
Sbjct: 192 VSQ-AKAVAASVEAELLGIQESIQLQKNAL-------AALVGQGPDRAASIEEPHITLTS 243
Query: 574 PPPPPMPGMP 583
P
Sbjct: 244 RYGLP-SEAG 252
>2dy3_A Alanine racemase; alpha/beta barrel, isomerase; HET: PLP; 2.10A
{Corynebacterium glutamicum}
Length = 361
Score = 30.1 bits (69), Expect = 3.5
Identities = 12/74 (16%), Positives = 28/74 (37%), Gaps = 12/74 (16%)
Query: 317 ATPDDLEFRLHLRNEIMRVGLYDL--LDALEKDASEDVSVQLKV--------FIEHKEED 366
TP+ +FR + I + + AL + +E + V +K+ E + E
Sbjct: 82 WTPEQ-DFRAAIDRNID-LAVISPAHAKALIETDAEHIRVSIKIDSGLHRSGVDEQEWEG 139
Query: 367 YYEFIQRFDNVRME 380
+ + ++ +
Sbjct: 140 VFSALAAAPHIEVT 153
>3oti_A CALG3; calicheamicin, TDP, structural genomics, PSI-2, protein STRU
initiative, center for eukaryotic structural genomics,
CESG fold; HET: TYD C0T; 1.60A {Micromonospora
echinospora} PDB: 3d0q_A* 3d0r_A*
Length = 398
Score = 30.2 bits (68), Expect = 3.5
Identities = 8/34 (23%), Positives = 11/34 (32%), Gaps = 1/34 (2%)
Query: 554 IPTGPKGGPPPPPPPPGGMGPPPPPMPGMPGPPP 587
+ P G P GG +P +P P
Sbjct: 202 LEAEP-EGWFMRWVPYGGGAVLGDRLPPVPARPE 234
>4f3t_A Protein argonaute-2; hydrolase/gene regulation, RNAI, slicer,
hydrolase-RNA; 2.25A {Homo sapiens} PDB: 4ei1_A 4ei3_A*
1r4k_A 1si2_A 1si3_A
Length = 861
Score = 30.5 bits (68), Expect = 3.6
Identities = 13/27 (48%), Positives = 13/27 (48%)
Query: 555 PTGPKGGPPPPPPPPGGMGPPPPPMPG 581
GP PP PPPP G PPP P
Sbjct: 6 GAGPALAPPAPPPPIQGYAFKPPPRPD 32
>3pzj_A Probable acetyltransferases; MCSG, PSI-2, structural genomics,
protein structure initiati midwest center for structural
genomics; HET: MSE; 1.85A {Chromobacterium violaceum}
Length = 209
Score = 29.7 bits (67), Expect = 3.6
Identities = 7/35 (20%), Positives = 10/35 (28%), Gaps = 2/35 (5%)
Query: 562 PPPPPPPPGGMGPPPPPMPGMPGPPPPPMPEMYTD 596
P PP P P + G P + +
Sbjct: 5 HSPQISPPIA--PSTPLLAGWRSAGKAPEAAIRGE 37
>2vg3_A Undecaprenyl pyrophosphate synthetase; transferase, cell WALL
biogenesis/degradation, cell cycle, P transferase; HET:
GPP; 1.8A {Mycobacterium tuberculosis} PDB: 2vg2_A*
2vg4_A
Length = 284
Score = 29.9 bits (68), Expect = 3.7
Identities = 10/36 (27%), Positives = 12/36 (33%)
Query: 554 IPTGPKGGPPPPPPPPGGMGPPPPPMPGMPGPPPPP 589
+P P P P + P P GP PP
Sbjct: 4 LPPAPDDYPTFPDTSTWPVVFPELPAAPYGGPCRPP 39
Score = 29.5 bits (67), Expect = 4.3
Identities = 10/30 (33%), Positives = 12/30 (40%)
Query: 554 IPTGPKGGPPPPPPPPGGMGPPPPPMPGMP 583
+P P GGP PP P P +P
Sbjct: 27 LPAAPYGGPCRPPQHTSKAAAPRIPADRLP 56
>2o8l_A V8 protease, taphylococcal serine; serine protease, enzyme,
hydrolase; 1.50A {Staphylococcus aureus} SCOP: b.47.1.1
PDB: 1qy6_A
Length = 274
Score = 29.8 bits (66), Expect = 3.8
Identities = 8/37 (21%), Positives = 8/37 (21%), Gaps = 2/37 (5%)
Query: 555 PTGPK--GGPPPPPPPPGGMGPPPPPMPGMPGPPPPP 589
P P P P P P P P
Sbjct: 236 PNNPDNPNNPDEPNNPDNPNNPDNPDNGDNNNSDNPD 272
>3iot_A Maltose-binding protein, huntingtin fusion protein; HTT-EX1, HD,
sugar transport, transport, apoptosis, cytoplasm,
disease mutation; 3.50A {Escherichia coli k-12} PDB:
3io6_A 3io4_A 3ior_A 3iou_A 3iov_A 3iow_A
Length = 449
Score = 30.2 bits (68), Expect = 3.8
Identities = 22/89 (24%), Positives = 30/89 (33%), Gaps = 4/89 (4%)
Query: 502 EDLSAKLEEAIMLRQEAEAKLVQAQKTLEDLSSGRPVEKNRLDEVKAQVAAGI----PTG 557
+ + A RQ +A L AQ +++ + K Q
Sbjct: 341 YAVRTAVINAASGRQTVDAALAAAQTNAAAMATLEKLMKAFESLKSFQQQQQQQQQQQQQ 400
Query: 558 PKGGPPPPPPPPGGMGPPPPPMPGMPGPP 586
+ PPPPPPPP P PP P P
Sbjct: 401 QQQQPPPPPPPPPPPQLPQPPPQAQPLLP 429
>2gqb_A Conserved hypothetical protein; hypothetical protein conserved
unknown protein, structural genomics, PSI; NMR
{Rhodopseudomonas palustris} SCOP: a.282.1.1
Length = 130
Score = 28.9 bits (64), Expect = 4.0
Identities = 5/34 (14%), Positives = 5/34 (14%)
Query: 555 PTGPKGGPPPPPPPPGGMGPPPPPMPGMPGPPPP 588
P P P P P
Sbjct: 13 GDSAAASPGGAQAPATTGAAGTAPTAPQPTAAPS 46
>1z87_A Alpha-1-syntrophin; protein binding; NMR {Mus musculus}
Length = 263
Score = 29.7 bits (66), Expect = 4.1
Identities = 14/71 (19%), Positives = 18/71 (25%), Gaps = 2/71 (2%)
Query: 532 LSSGRPVEKNRLDEVKAQVA--AGIPTGPKGGPPPPPPPPGGMGPPPPPMPGMPGPPPPP 589
+G R V +A A + G P P P P G P P
Sbjct: 16 CGAGSGAGGERWQRVLLSLAEDALTVSPADGEPGPEPEPAQLNGAAEPGAAPPQLPEALL 75
Query: 590 MPEMYTDCHKN 600
+ K
Sbjct: 76 LQRRRVTVRKA 86
>3iyk_A VP5; icosahedral virus; HET: MNA; 7.00A {Bluetongue virus}
Length = 526
Score = 29.9 bits (67), Expect = 4.1
Identities = 19/65 (29%), Positives = 34/65 (52%), Gaps = 1/65 (1%)
Query: 491 EKSKTEEDRRVEDLSAKLEEAIMLRQEAEAKLVQA-QKTLEDLSSGRPVEKNRLDEVKAQ 549
K TEED ++ L+ L++ I R AE +V+ + ++ L + VE++ + E Q
Sbjct: 159 NKILTEEDLQMRRLATALQKEIGERTHAETVMVKEYRDKIDALKNAIEVERDGMQEEAIQ 218
Query: 550 VAAGI 554
AG+
Sbjct: 219 EIAGM 223
>4d9a_A 2-pyrone-4,6-dicarbaxylate hydrolase; structural genomics, protein
structure initiative; HET: 0GY; 1.35A {Sphingomonas
paucimobilis} PDB: 4d95_A* 4d9d_A 2qah_A 4d8l_A
Length = 303
Score = 29.6 bits (66), Expect = 4.2
Identities = 5/27 (18%), Positives = 5/27 (18%)
Query: 572 MGPPPPPMPGMPGPPPPPMPEMYTDCH 598
P P P D H
Sbjct: 5 NDERILSWNETPSKPRYTPPPGAIDAH 31
>1cnt_1 CNTF, ciliary neurotrophic factor; cytokine, growth factor; 2.40A
{Homo sapiens} SCOP: a.26.1.1
Length = 187
Score = 29.3 bits (65), Expect = 4.6
Identities = 16/89 (17%), Positives = 28/89 (31%), Gaps = 15/89 (16%)
Query: 495 TEEDRRVEDLSAKLEEAIMLRQEAEAKLVQAQKTLEDLSSGRPVEKNRLDEVKAQVAA-- 552
TE +R E+L A ++L + L++ Q+ + + + QVAA
Sbjct: 68 TEAERLQENLQAYRTFHVLLAR-----LLEDQQ--VHFTPTEGDFHQAIHTLLLQVAAFA 120
Query: 553 ----GIPTGPKGGPPPPPPPPGGMGPPPP 577
+ P GM
Sbjct: 121 YQIEELMILL--EYKIPRNEADGMPINVG 147
>3dsk_A Cytochrome P450 74A, chloroplast; P450 fold, fatty acid
biosynthesis, heme, iron, synthesis, lyase,
metal-binding, oxylipin biosynthesis; HET: HEM T25;
1.55A {Arabidopsis thaliana} PDB: 2rcm_A* 3dsj_A*
3dsi_A* 2rcl_A* 2rch_A* 3cli_A*
Length = 495
Score = 29.9 bits (67), Expect = 4.6
Identities = 7/30 (23%), Positives = 9/30 (30%)
Query: 560 GGPPPPPPPPGGMGPPPPPMPGMPGPPPPP 589
G P G P+ +PG P
Sbjct: 8 GSETPDLTVATRTGSKDLPIRNIPGNYGLP 37
>1pcx_A Protein transport protein SEC24; 2.50A {Saccharomyces cerevisiae}
SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 PDB:
1pd0_A 1pd1_A
Length = 810
Score = 29.6 bits (65), Expect = 5.7
Identities = 10/44 (22%), Positives = 14/44 (31%)
Query: 555 PTGPKGGPPPPPPPPGGMGPPPPPMPGMPGPPPPPMPEMYTDCH 598
G P P + PPP+ + PPPP +
Sbjct: 11 AMGQNMRPMNQLYPIDLLTELPPPITDLTLPPPPLVIPPERMLV 54
>3fy4_A 6-4 photolyase; DNA repair, clock cryptochrome; HET: MES FAD; 2.70A
{Arabidopsis thaliana}
Length = 537
Score = 29.6 bits (67), Expect = 5.8
Identities = 4/35 (11%), Positives = 8/35 (22%)
Query: 559 KGGPPPPPPPPGGMGPPPPPMPGMPGPPPPPMPEM 593
PP + + P + E+
Sbjct: 171 PSCAKSELVMSYSSLPPIGDIGNLGISEVPSLEEL 205
>3pik_A Cation efflux system protein CUSC; beta-barrel, lipoprotein, outer
membrane; HET: UNL; 2.30A {Escherichia coli}
Length = 446
Score = 29.6 bits (67), Expect = 5.8
Identities = 9/72 (12%), Positives = 14/72 (19%), Gaps = 14/72 (19%)
Query: 514 LRQEAEAKLVQAQKTLEDLSSGRPVEKNRLDEVKAQVAAGIPTGPKGGPPPPPPPPGGMG 573
L Q A + + + N L Q+ G P
Sbjct: 197 LEQ-ARGVIESTRSDIAKRQGELAQANNAL-----QLLLGSY------GKLPQAQTVNSD 244
Query: 574 PPPPPM--PGMP 583
G+
Sbjct: 245 SLQSVKLPAGLS 256
>1dd1_A SMAD4; B-sheet sandwich helix-turn-helix, signaling protein; 2.62A
{Homo sapiens} SCOP: b.26.1.1 PDB: 1g88_A
Length = 268
Score = 29.1 bits (64), Expect = 5.9
Identities = 11/31 (35%), Positives = 12/31 (38%)
Query: 562 PPPPPPPPGGMGPPPPPMPGMPGPPPPPMPE 592
PP PP PG P + P P PE
Sbjct: 7 HPPMPPHPGHYWPVHNELAFQPPISNHPAPE 37
>1nxk_A MAP kinase-activated protein kinase 2; MK2, phosphorylation,
staurosporine, transfe; HET: STU; 2.70A {Homo sapiens}
SCOP: d.144.1.7 PDB: 1kwp_A* 1ny3_A* 2onl_C
Length = 400
Score = 29.3 bits (66), Expect = 6.0
Identities = 15/32 (46%), Positives = 16/32 (50%)
Query: 561 GPPPPPPPPGGMGPPPPPMPGMPGPPPPPMPE 592
G PP P P PP PP P +P PP P P
Sbjct: 7 GQSPPVPFPAPAPPPQPPTPALPHPPAQPPPP 38
>2wsu_A Putative fiber protein; viral protein, carbohydrate recognition
domain, tandem-repea; 1.90A {Porcine adenovirus 4} PDB:
2wsv_A* 2wt0_A* 2wt1_A* 2wt2_A*
Length = 343
Score = 29.4 bits (65), Expect = 6.1
Identities = 6/25 (24%), Positives = 8/25 (32%)
Query: 567 PPPGGMGPPPPPMPGMPGPPPPPMP 591
G+ P M M G +P
Sbjct: 9 HHSSGLVPRGSHMASMTGGQQGRIP 33
>1ldj_A Cullin homolog 1, CUL-1; cullin, ROC1, HRT1, zinc ring finger,
ligase, ubiquitin, ubiquitination, SCF; 3.00A {Homo
sapiens} SCOP: a.4.5.34 a.118.17.1 e.40.1.1 PDB: 1u6g_A
1ldk_A 1ldk_B 3rtr_A
Length = 760
Score = 29.4 bits (65), Expect = 6.4
Identities = 10/61 (16%), Positives = 24/61 (39%), Gaps = 3/61 (4%)
Query: 64 TSYENKKQENMLEKLNPE---QLNQKFEDMLNDMNLSDEKKEPLRRQPLANKKKMLLMHY 120
S + + +M+ KL + K + M D+ +S + E ++ ++ L
Sbjct: 462 NSASDDAEASMISKLKQACGFEYTSKLQRMFQDIGVSKDLNEQFKKHLTNSEPLDLDFSI 521
Query: 121 K 121
+
Sbjct: 522 Q 522
>1iuh_A 2'-5' RNA ligase; riken structural genomics/proteomics initiative,
RSGI, structural genomics; 2.50A {Thermus thermophilus}
SCOP: d.61.1.2
Length = 198
Score = 28.8 bits (64), Expect = 6.8
Identities = 11/33 (33%), Positives = 18/33 (54%)
Query: 511 AIMLRQEAEAKLVQAQKTLEDLSSGRPVEKNRL 543
A+ L +E A LV+AQ + +PV ++L
Sbjct: 6 AVFLPEEVRAALVEAQTKVRPFRGWKPVPPHQL 38
>1wb0_A Chitinase 1, chitotriosidase 1; cyclopentapeptide inhibitors,
chitinase inhibitors, carbohyd metabolism, chitin
degradation, chitin-binding; HET: VR0 MEA; 1.65A {Homo
sapiens} SCOP: c.1.8.5 d.26.3.1 PDB: 1waw_A* 1guv_A
1lg2_A 1lg1_A 1lq0_A 1hki_A* 1hkj_A* 1hkm_A* 1hkk_A*
Length = 445
Score = 29.3 bits (66), Expect = 6.9
Identities = 7/49 (14%), Positives = 9/49 (18%)
Query: 560 GGPPPPPPPPGGMGPPPPPMPGMPGPPPPPMPEMYTDCHKNIINGKQAC 608
P P P P P P P + +
Sbjct: 365 SLPYLPSGTPELEVPKPGQPSEPEHGPSPGQDTFCQGKADGLYPNPRER 413
>3q3u_A Lignin peroxidase; oxidoreductase; HET: HEM; 1.85A {Trametes
cervina}
Length = 338
Score = 29.1 bits (65), Expect = 7.0
Identities = 13/49 (26%), Positives = 14/49 (28%), Gaps = 11/49 (22%)
Query: 554 IPTGPKGGPPPPPPPPGGMGP-----------PPPPMPGMPGPPPPPMP 591
IPT P P G P P +P PGP P
Sbjct: 288 IPTPPLAKVAQVGSLPPGKSMADVQVACTNGMPFPSLPTSPGPVQTVAP 336
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine
exchange factor, coiled-coil, endocytosis/exocytosis
complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Length = 154
Score = 28.2 bits (62), Expect = 7.2
Identities = 13/54 (24%), Positives = 27/54 (50%)
Query: 490 AEKSKTEEDRRVEDLSAKLEEAIMLRQEAEAKLVQAQKTLEDLSSGRPVEKNRL 543
++ ++ D V+ L + + LR +AE + + K +EDL++ E N +
Sbjct: 49 LKRELSDRDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDLTASLFDEANNM 102
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil,
endocytosis/exocytosis complex; 2.70A {Saccharomyces
cerevisiae} SCOP: h.1.33.1
Length = 97
Score = 27.5 bits (60), Expect = 7.6
Identities = 16/64 (25%), Positives = 31/64 (48%), Gaps = 2/64 (3%)
Query: 491 EKSKTEEDRRVEDLSAKLEEAIMLRQEAEAKLVQAQKTLEDLSSGRPVEKNRL--DEVKA 548
++ ++ D V+ L + + LR +AE + + K +EDL++ E N + D K
Sbjct: 18 KRELSDRDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDLTASLFDEANNMVADARKE 77
Query: 549 QVAA 552
+ A
Sbjct: 78 KYAI 81
>2wvr_C DNA replication factor CDT1; DNA replication license, DNA
replication inhibitor, phosphoprotein, UBL conjugation,
DNA-binding, polymorphism; HET: DNA; 3.30A {Homo
sapiens} PDB: 2klo_A*
Length = 546
Score = 28.9 bits (63), Expect = 9.1
Identities = 14/65 (21%), Positives = 18/65 (27%)
Query: 525 AQKTLEDLSSGRPVEKNRLDEVKAQVAAGIPTGPKGGPPPPPPPPGGMGPPPPPMPGMPG 584
Q+ + D + R R+ K P P P PP PG
Sbjct: 2 EQRRVTDFFARRRPGPPRIAPPKLACRTPSPARPALRAPASATSGSRKRARPPAAPGRDQ 61
Query: 585 PPPPP 589
PP
Sbjct: 62 ARPPA 66
>3dzy_A Retinoic acid receptor RXR-alpha; DNA-binding, HOST-virus
interaction, metal-binding, nucleus, receptor,
transcription, transcription regulation, zinc-FIN
activator; HET: DNA REA BRL; 3.10A {Homo sapiens} PDB:
3dzu_A* 3e00_A*
Length = 467
Score = 28.9 bits (64), Expect = 9.6
Identities = 10/37 (27%), Positives = 12/37 (32%)
Query: 555 PTGPKGGPPPPPPPPGGMGPPPPPMPGMPGPPPPPMP 591
P P GMGPP + GP +P
Sbjct: 49 PGQLHSPISTLSSPINGMGPPFSVISSPMGPHSMSVP 85
>4dk0_A Putative MACA; alpha-hairpin, lipoyl, beta-barrel, periplasmic
protein, MEM protein; 3.50A {Aggregatibacter
actinomycetemcomitans} PDB: 4dk1_A
Length = 369
Score = 28.6 bits (64), Expect = 9.8
Identities = 11/67 (16%), Positives = 19/67 (28%), Gaps = 3/67 (4%)
Query: 489 LAEKSKTEEDRRVEDLSAKLEEAIMLRQEAEAKLVQAQKTLE---DLSSGRPVEKNRLDE 545
LAE T + + A L + A + L + + L+
Sbjct: 60 LAEIDSTTQINTLNTRKAALASYQAQLVARKTAYDVALSNYQRLSKLYGQKATSLDTLNT 119
Query: 546 VKAQVAA 552
KA +
Sbjct: 120 AKATLNN 126
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.317 0.134 0.380
Gapped
Lambda K H
0.267 0.0437 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 14,120,523
Number of extensions: 897625
Number of successful extensions: 7592
Number of sequences better than 10.0: 1
Number of HSP's gapped: 5267
Number of HSP's successfully gapped: 822
Length of query: 927
Length of database: 6,701,793
Length adjustment: 102
Effective length of query: 825
Effective length of database: 3,853,851
Effective search space: 3179427075
Effective search space used: 3179427075
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 62 (28.4 bits)