RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy15122
(927 letters)
>d2bnxa1 a.118.1.23 (A:133-475) Diaphanous protein homolog 1, Diap1
(Dia1, DRF1) {Mouse (Mus musculus) [TaxId: 10090]}
Length = 343
Score = 282 bits (724), Expect = 4e-88
Identities = 140/372 (37%), Positives = 225/372 (60%), Gaps = 35/372 (9%)
Query: 136 PIEYIQYLSQPELSVNKMYSCIESLRIALTNHPLSWVNEFVLQDNKNFRKYPIAFLYPRF 195
+ YIQ L + L + SC+ESLR++L N+P+SWV F + + + L+
Sbjct: 4 AMMYIQEL-RSGLRDMHLLSCLESLRVSLNNNPVSWVQTFGAEGLASLLDI-LKRLHDE- 60
Query: 196 PSRSRNDSRYDRVQYECVRCIRAIMNNTVGLKQMFGQKEALTIVARSLDPNKPTVMLEAV 255
+ + R Q+E +RC++A MNN G+K M +E + ++ R++DP P +M++A
Sbjct: 61 -KEETSGNYDSRNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAA 119
Query: 256 KVLAAVCLI--PPDGHDKVIKAITMSGELKGKERFQPVVQGLMVKGNNEALRTACLQLIN 313
K+L+A+C++ P D +++V++A+T E+ ERFQP++ GL G + AL+ CLQLIN
Sbjct: 120 KLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLK-SGTSIALKVGCLQLIN 178
Query: 314 AIVATPDDLEFRLHLRNEIMRVGLYDLLDALEKDASEDVSVQLKVFIEHKEEDYYEFIQR 373
A++ ++L+FR+H+R+E+MR+GL+ +L L + +ED+ VQL VF E +ED+++ R
Sbjct: 179 ALITPAEELDFRVHIRSELMRLGLHQVLQELREIENEDMKVQLCVFDEQGDEDFFDLKGR 238
Query: 374 FDNVRMEIDDVNDCFETVRNMVMDSACEPYLLSILQHLLFIRDDQNMVMDSACEPYLLSI 433
D++RME+DD + F+ + N V DS EP+ LSI
Sbjct: 239 LDDIRMEMDDFGEVFQIILNTVKDSKAEPHFLSI-------------------------- 272
Query: 434 LQHLLFIRDDQYVRLAYYKLLEECVSQIVLHRGGCDPDFRSSRRFQLDVQPLVEHLAEKS 493
LQHLL +R+D R YYKL+EECVSQIVLH+ G DPDF+ R Q+D++ LV+ + +K+
Sbjct: 273 LQHLLLVRNDYEARPQYYKLIEECVSQIVLHKNGTDPDFK-CRHLQIDIERLVDQMIDKT 331
Query: 494 KTEEDR-RVEDL 504
K E+ + +L
Sbjct: 332 KVEKSEAKATEL 343
>d1v9da_ a.207.1.1 (A:) Diaphanous protein homolog 1, dia1 {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 332
Score = 197 bits (503), Expect = 4e-57
Identities = 106/232 (45%), Positives = 150/232 (64%), Gaps = 2/232 (0%)
Query: 591 PEMYTDCHKNIINGKQACEEVKQSKKLAKILELILLMGNYMNSGSRNGGAFGFEINFLTK 650
E + I++ ACEE+++S+ + +LEL LL+GNYMN+GSRN GAFGF I+FL K
Sbjct: 102 SEQVENIKPEIVSVTAACEELRKSENFSSLLELTLLVGNYMNAGSRNAGAFGFNISFLCK 161
Query: 651 LSSTKDIENKTTLLHYLVDTIEQKFPECLKFGDELLHVDRAARVSTDVIQNSIRQMENNI 710
L TK + K TLLH+L + E PE LKF DEL HV++A+RVS + +Q S+ QM+ I
Sbjct: 162 LRDTKSADQKMTLLHFLAELCENDHPEVLKFPDELAHVEKASRVSAENLQKSLDQMKKQI 221
Query: 711 KNLETDIQNCKQAPVANENDKFLEIMEPFAKEVRQKITLLSNMSKNMMTLYGDLAEFYTF 770
++E D+QN A +E DKF+E M F K+ +++ L M NM TLY +L +++ F
Sbjct: 222 ADVERDVQNFPAA--TDEKDKFVEKMTSFVKDAQEQYNKLRMMHSNMETLYKELGDYFVF 279
Query: 771 DKNIYTLEEFFTDIKTFKDSFYQAWQENIKLREAEEKSIRVREAREKAENEK 822
D ++EEFF D+ F++ F QA +EN K RE EEK R + A+EKAE E+
Sbjct: 280 DPKKLSVEEFFMDLHNFRNMFLQAVKENQKRRETEEKMRRAKLAKEKAEKER 331
>d1ux5a_ a.207.1.1 (A:) Bni1 {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 411
Score = 177 bits (451), Expect = 3e-49
Identities = 54/223 (24%), Positives = 96/223 (43%), Gaps = 5/223 (2%)
Query: 591 PEMYTDCHKNIINGKQACEEVKQSKKLAKILELILLMGNYMNSGSRNGGAFGFEINFLTK 650
Y + + +A +++S L + +IL +GN+MN S+ A GF+++ L +
Sbjct: 190 EREYNELLAKLRKVDKAVSALQESDNLRNVFNVILAVGNFMNDTSKQ--AQGFKLSTLQR 247
Query: 651 LSSTKDIENKTTLLHYLVDTIEQKFPECLKFGDELLHVDRAARVSTDVIQNSIRQMENNI 710
L+ KD N T L+Y+ + +P F EL V +VS + + N + +I
Sbjct: 248 LTFIKDTTNSMTFLNYVEKIVRLNYPSFNDFLSELEPVLDVVKVSIEQLVNDCKDFSQSI 307
Query: 711 KNLETDIQNCKQAPV--ANENDKFLEIMEPFAKEVRQKITLLSNMSKNMMTLYGDLAEFY 768
N+E ++ + + DK L P E R+K LL + K + + L Y
Sbjct: 308 VNVERSVEIGNLSDSSKFHPLDKVLIKTLPVLPEARKKGDLLEDEVKLTIMEFESLMHTY 367
Query: 769 TFD-KNIYTLEEFFTDIKTFKDSFYQAWQENIKLREAEEKSIR 810
D + + FF F + + +A +N+ E E I+
Sbjct: 368 GEDSGDKFAKISFFKKFADFINEYKKAQAQNLAAEEEERLYIK 410
>d1jvra_ a.61.1.2 (A:) HTLV-II matrix protein {Human T-cell leukemia
virus type 2 [TaxId: 11909]}
Length = 137
Score = 36.8 bits (85), Expect = 0.003
Identities = 12/34 (35%), Positives = 12/34 (35%)
Query: 555 PTGPKGGPPPPPPPPGGMGPPPPPMPGMPGPPPP 588
P P P P PPPPP PPP
Sbjct: 94 SPSAPAAPVPTPICPTTTPPPPPPPSPEAHVPPP 127
Score = 36.4 bits (84), Expect = 0.004
Identities = 12/53 (22%), Positives = 14/53 (26%), Gaps = 4/53 (7%)
Query: 540 KNRLDEVKAQVAAGIPTGPKGGPPPPPPPPGGMGPPPPPMPGMPGPPPPPMPE 592
K V + + P P P P P P PPP P
Sbjct: 75 KGYPGRVVEIINILVKNQVSPSAPAAPVPT----PICPTTTPPPPPPPSPEAH 123
Score = 35.6 bits (82), Expect = 0.007
Identities = 13/34 (38%), Positives = 14/34 (41%), Gaps = 3/34 (8%)
Query: 562 PPPPPPPPGGMGPPPPPMPGMPGPPPPPMPEMYT 595
P P P P P P PPPPP PE +
Sbjct: 94 SPSAPAAPV---PTPICPTTTPPPPPPPSPEAHV 124
Score = 34.5 bits (79), Expect = 0.019
Identities = 15/38 (39%), Positives = 16/38 (42%)
Query: 555 PTGPKGGPPPPPPPPGGMGPPPPPMPGMPGPPPPPMPE 592
P+ P P P P PPPPP P PPP P
Sbjct: 95 PSAPAAPVPTPICPTTTPPPPPPPSPEAHVPPPYVEPT 132
Score = 32.5 bits (74), Expect = 0.076
Identities = 15/59 (25%), Positives = 18/59 (30%), Gaps = 5/59 (8%)
Query: 535 GRPVEKNRLDEVKAQVAAGIPTGPKGGPPPPPPPPGGMGPPPPPMPGMPGPP-PPPMPE 592
G P + + + P P P PPPP P P PPP E
Sbjct: 76 GYPGRVVEIINILVKNQVSPSAPAAPVPTPICPT----TTPPPPPPPSPEAHVPPPYVE 130
Score = 31.8 bits (72), Expect = 0.16
Identities = 11/35 (31%), Positives = 12/35 (34%), Gaps = 4/35 (11%)
Query: 564 PPPPPPGGMGPPPPPMPGMPGPPPPPMPEMYTDCH 598
P P P P P P PPP P + H
Sbjct: 93 VSPSAP----AAPVPTPICPTTTPPPPPPPSPEAH 123
Score = 28.7 bits (64), Expect = 1.5
Identities = 11/26 (42%), Positives = 11/26 (42%)
Query: 558 PKGGPPPPPPPPGGMGPPPPPMPGMP 583
PPPPPP P PPP P
Sbjct: 109 TTTPPPPPPPSPEAHVPPPYVEPTTT 134
Score = 26.4 bits (58), Expect = 8.7
Identities = 10/31 (32%), Positives = 10/31 (32%)
Query: 555 PTGPKGGPPPPPPPPGGMGPPPPPMPGMPGP 585
PPPPPPP PPP
Sbjct: 104 TPICPTTTPPPPPPPSPEAHVPPPYVEPTTT 134
>d1cnt1_ a.26.1.1 (1:) Ciliary neurotrophic factor (CNTF) {Human
(Homo sapiens) [TaxId: 9606]}
Length = 177
Score = 35.1 bits (81), Expect = 0.018
Identities = 15/90 (16%), Positives = 27/90 (30%), Gaps = 14/90 (15%)
Query: 495 TEEDRRVEDLSAKLEEAIMLRQEAEAKLVQAQKTLEDLSSGRPVEKNRLDEVKAQVAA-- 552
TE +R E+L A ++L + L++ Q+ + + + QVAA
Sbjct: 58 TEAERLQENLQAYRTFHVLLAR-----LLEDQQ--VHFTPTEGDFHQAIHTLLLQVAAFA 110
Query: 553 ----GIPTGPKGGPPPPPPPPGGMGPPPPP 578
+ P G
Sbjct: 111 YQIEELMI-LLEYKIPRNEADGMPINVGDG 139
>d2gqba1 a.282.1.1 (A:1-130) Hypothetical protein RPA2825
{Rhodopseudomonas palustris [TaxId: 1076]}
Length = 130
Score = 32.4 bits (74), Expect = 0.066
Identities = 6/33 (18%), Positives = 6/33 (18%)
Query: 557 GPKGGPPPPPPPPGGMGPPPPPMPGMPGPPPPP 589
G P P P P P
Sbjct: 13 GDSAAASPGGAQAPATTGAAGTAPTAPQPTAAP 45
Score = 30.5 bits (69), Expect = 0.32
Identities = 7/30 (23%), Positives = 8/30 (26%)
Query: 551 AAGIPTGPKGGPPPPPPPPGGMGPPPPPMP 580
AA P G + P P P
Sbjct: 16 AAASPGGAQAPATTGAAGTAPTAPQPTAAP 45
Score = 29.0 bits (65), Expect = 1.1
Identities = 5/32 (15%), Positives = 6/32 (18%)
Query: 547 KAQVAAGIPTGPKGGPPPPPPPPGGMGPPPPP 578
A + G P P P
Sbjct: 15 SAAASPGGAQAPATTGAAGTAPTAPQPTAAPS 46
Score = 27.4 bits (61), Expect = 3.6
Identities = 7/31 (22%), Positives = 7/31 (22%)
Query: 561 GPPPPPPPPGGMGPPPPPMPGMPGPPPPPMP 591
G P G P G P P
Sbjct: 13 GDSAAASPGGAQAPATTGAAGTAPTAPQPTA 43
Score = 26.7 bits (59), Expect = 7.9
Identities = 4/32 (12%), Positives = 6/32 (18%)
Query: 547 KAQVAAGIPTGPKGGPPPPPPPPGGMGPPPPP 578
+ A+ P P P
Sbjct: 14 DSAAASPGGAQAPATTGAAGTAPTAPQPTAAP 45
>d1g9la_ a.144.1.1 (A:) poly(A) binding protein {Human (Homo
sapiens) [TaxId: 9606]}
Length = 144
Score = 28.8 bits (64), Expect = 1.4
Identities = 7/49 (14%), Positives = 9/49 (18%), Gaps = 6/49 (12%)
Query: 548 AQVAAGIPTGPKGGPP-----PPPPPPGGMGPPPPPMPGMPGPPPPPMP 591
AA P + P P + P P
Sbjct: 4 GSAAAATP-AVRTVPQYKYAAGVRNPQQHLNAQPQVTMQQPAVHVQGQE 51
Score = 27.6 bits (61), Expect = 4.5
Identities = 6/44 (13%), Positives = 7/44 (15%), Gaps = 1/44 (2%)
Query: 548 AQVAAGIPTGPKGGPPPPPPPPGGMGPPPPPMPGMPGPPPPPMP 591
+P K P P M P
Sbjct: 10 TPAVRTVP-QYKYAAGVRNPQQHLNAQPQVTMQQPAVHVQGQEP 52
Score = 26.8 bits (59), Expect = 8.0
Identities = 6/41 (14%), Positives = 8/41 (19%), Gaps = 3/41 (7%)
Query: 555 PTGPKGGPPPPPPPPGGMGPPPP---PMPGMPGPPPPPMPE 592
P G P P + P M +
Sbjct: 2 PLGSAAAATPAVRTVPQYKYAAGVRNPQQHLNAQPQVTMQQ 42
>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId:
10090]}
Length = 434
Score = 29.8 bits (65), Expect = 1.5
Identities = 23/147 (15%), Positives = 45/147 (30%), Gaps = 11/147 (7%)
Query: 207 RVQYECVRCIRAIMNNTVGLKQMFGQKEALTIVARSLDPNKPTVMLEAVKVLAAVCLIPP 266
+Q E + I Q + + L EA +
Sbjct: 287 NIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTS--- 343
Query: 267 DGHDKVIKAITMSGELKGKERFQPVVQGLMVKGNNEALRTACLQLINAIVATPDDLEFRL 326
G + I + G + +P++ ++ + + L I+ I + L
Sbjct: 344 GGTVEQIVYLVHCGII------EPLMN--LLSAKDTKIIQVILDAISNIFQAAEKLGETE 395
Query: 327 HLRNEIMRVGLYDLLDALEKDASEDVS 353
L I G D ++AL++ +E V
Sbjct: 396 KLSIMIEECGGLDKIEALQRHENESVY 422
>d1qkia2 d.81.1.5 (A:200-434,A:450-511) Glucose 6-phosphate
dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}
Length = 297
Score = 29.2 bits (65), Expect = 2.0
Identities = 35/213 (16%), Positives = 64/213 (30%), Gaps = 31/213 (14%)
Query: 375 DNVRMEIDDVNDCFETV-RNMVMDSACEPYLLSILQHLLFIRDDQNMVMDSACEPYLLSI 433
D+VR E V C V N V+ + DD + S + +
Sbjct: 83 DDVRDEKVKVLKCISEVQANNVVLGQYVGNPDGEGEATKGYLDDPTVPRGSTTATFAAVV 142
Query: 434 LQHLLFIRDDQYVRLAYY----KLLEECVSQIVLH-RGGCDPDFRSS---RRFQLDVQPL 485
L ++ ++++ + + K L E +++ L F + VQP
Sbjct: 143 L----YVENERWDGVPFILRCGKALNERKAEVRLQFHDVAGDIFHQQCKRNELVIRVQP- 197
Query: 486 VEHLAEKSKTEEDRRVEDLSAKLEEAIMLRQEAEAKLVQAQKTLEDLSSGRPVEKNRLDE 545
E T+ + + EE+ + +++ P+ R DE
Sbjct: 198 ----NEAVYTKMMTKKPGMFFNPEESELDLTYGNR--------YKNV--KLPMHFVRSDE 243
Query: 546 VKAQ---VAAGIPTGPKGGPPPPPPPPGGMGPP 575
+ + P P P G GP
Sbjct: 244 LLEAWRIFTPLLHQIELEKPKPIPYIYGSRGPT 276
>d1tzpa_ d.65.1.3 (A:) D-alanyl-D-alanine-endopeptidase MepA
{Escherichia coli [TaxId: 562]}
Length = 255
Score = 29.1 bits (65), Expect = 2.0
Identities = 14/49 (28%), Positives = 15/49 (30%), Gaps = 6/49 (12%)
Query: 555 PTGPKGGPPPPPPPPG-GMGPP-----PPPMPGMPGPPPPPMPEMYTDC 597
P P PP G G G PP PG P P + C
Sbjct: 198 PADSLECEDQPLPPSGDGCGAELQSWFEPPKPGTTKPEKKTPPPLPPSC 246
>d1ldja3 e.40.1.1 (A:411-686) Cullin homolog 1, cul-1 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 276
Score = 29.2 bits (65), Expect = 2.2
Identities = 10/61 (16%), Positives = 24/61 (39%), Gaps = 3/61 (4%)
Query: 64 TSYENKKQENMLEKLNPE---QLNQKFEDMLNDMNLSDEKKEPLRRQPLANKKKMLLMHY 120
S + + +M+ KL + K + M D+ +S + E ++ ++ L
Sbjct: 68 NSASDDAEASMISKLKQACGFEYTSKLQRMFQDIGVSKDLNEQFKKHLTNSEPLDLDFSI 127
Query: 121 K 121
+
Sbjct: 128 Q 128
Score = 28.0 bits (62), Expect = 4.9
Identities = 12/86 (13%), Positives = 32/86 (37%), Gaps = 5/86 (5%)
Query: 8 EEQENMLEKLNPE---QLNQKFEDMLNDMNLSDEKKEPLRRQPLANKKKMLLMHYKGTVT 64
+ + +M+ KL + K + M D+ +S + E ++ ++ L + +
Sbjct: 73 DAEASMISKLKQACGFEYTSKLQRMFQDIGVSKDLNEQFKKHLTNSEPLDLDFSIQVLSS 132
Query: 65 SYENKKQENMLEKLNPEQLNQKFEDM 90
+Q P +L + ++
Sbjct: 133 GSWPFQQSCTFAL--PSELERSYQRF 156
>d1qvra3 c.37.1.20 (A:536-850) ClpB, AAA+ modules {Thermus
thermophilus [TaxId: 274]}
Length = 315
Score = 28.9 bits (64), Expect = 2.8
Identities = 51/284 (17%), Positives = 92/284 (32%), Gaps = 36/284 (12%)
Query: 227 KQMFGQKEALTIVARSL--------DPNKPTVMLEAVKVLAAVCLIPPDGHDKVIKAITM 278
K++ GQ EA+ VA ++ DPN+P + + + P G K A T+
Sbjct: 23 KRVVGQDEAIRAVADAIRRARAGLKDPNRP---------IGSFLFLGPTGVGKTELAKTL 73
Query: 279 SGELKGKERFQPVVQGLMVKGNNEALRTACLQLINAI---VATPDDLEFRLHLRNEIMRV 335
+ L E + + + A +LI A V + + +R V
Sbjct: 74 AATLFDTEEAM-----IRIDMTEYMEKHAVSRLIGAPPGYVGYEEGGQLTEAVRRRPYSV 128
Query: 336 GLYDLLDALEKDASEDVSVQLK----VFIEHKEEDYYEFIQRFDNVRMEIDDVNDCFETV 391
L+D ++ D + L + D+ + + + +
Sbjct: 129 ILFDEIEKAHPDVFNILLQILDDGRLTDSHGRTVDFRNTVIILTSNLGSPLILEGLQKGW 188
Query: 392 RNMVMDSACEPYLLSILQHLLFIRDDQNMVMDSACEPYLLSILQHLLFIRDDQYVRLAYY 451
+ L + R D+ +V + + I++ L +
Sbjct: 189 PYERIRDEVFKVLQQHFRPEFLNRLDEIVVFRPLTKEQIRQIVEIQLSYLRARLAEKRIS 248
Query: 452 KLLEECVSQIVLHRGGCDPDF--RSSRRFQLDVQPLVEH-LAEK 492
L E + R G DP F R RR +Q +E LA+K
Sbjct: 249 LELTEAAKDFLAER-GYDPVFGARPLRRV---IQRELETPLAQK 288
>d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 861
Score = 29.0 bits (63), Expect = 3.8
Identities = 40/392 (10%), Positives = 104/392 (26%), Gaps = 34/392 (8%)
Query: 55 LLMHYKGTVTSYENKKQENMLEKLNPEQLNQKFEDMLNDMNLSDEKKEPLRRQPLANKKK 114
L+ V + + + Q+ + L + P +
Sbjct: 419 LMNDQSLQVKETTAWCIGRIADSVAESIDPQQHLPGVVQACLIGLQDHPKVATNCSWTII 478
Query: 115 MLLMHYKGTVTSYENKSKFDKPIEYIQYLSQPELSVNKMYSCIESLRIALTNHPLSWVNE 174
L+ S I ++ + N S +L + +
Sbjct: 479 NLVEQLAEATPSPIYNFYPALVDGLIGAANRIDNEFNARASAFSALTTMVEY-----ATD 533
Query: 175 FVLQDNKNFRKYPIAFLYPRFPSRSRNDSRYDRVQYECVRC-----IRAIMNNTVGLKQM 229
V + + + + + L + D + ++ + A++ + +
Sbjct: 534 TVAETSASISTFVMDKLGQTMSVDENQLTLEDAQSLQELQSNILTVLAAVIRKSPSSVEP 593
Query: 230 FGQKEALTIVARSLDPNKPTVMLEAVKVLAAVCLIPPDGHDKVIKAITMSGELKGKERFQ 289
+ + + ++A+ G +K ++ LK +
Sbjct: 594 VADMLMGLFFRLLEKKDSAFIEDDVFYAISALAASLGKGFEKYLETF-SPYLLKALNQVD 652
Query: 290 PVVQ-------GLMVKGNNEALRTACLQLINAIVATPDDLEFRLHLRNEIMRVGLYDLLD 342
V + E R ++N + + R L+ ++ V D+
Sbjct: 653 SPVSITAVGFIADISNSLEEDFRRYSDAMMNVLAQMISNPNARRELKPAVLSV-FGDIAS 711
Query: 343 ALEKDASEDVSVQLKVFIEH----KEEDYYEFIQRFDNVRMEIDDVNDCFETVRNMV--- 395
+ D ++ + + + E E + V + +V
Sbjct: 712 NIGADFIPYLNDIMALCVAAQNTKPENGTLEALDYQIKVL------EAVLDAYVGIVAGL 765
Query: 396 --MDSACEPYLLSILQHLLFIRDDQNMVMDSA 425
A PY+ +I Q + + +D + + A
Sbjct: 766 HDKPEALFPYVGTIFQFIAQVAEDPQLYSEDA 797
>d1uk5a_ a.7.7.1 (A:) BAG-family molecular chaperone regulator-3
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 111
Score = 26.7 bits (59), Expect = 4.8
Identities = 10/26 (38%), Positives = 11/26 (42%)
Query: 557 GPKGGPPPPPPPPGGMGPPPPPMPGM 582
G G P P P G PP PG+
Sbjct: 4 GSSGAPAEPAAPKSGEAETPPKHPGV 29
>d1evsa_ a.26.1.1 (A:) Oncostatin M {Human (Homo sapiens) [TaxId:
9606]}
Length = 184
Score = 27.3 bits (60), Expect = 5.7
Identities = 6/19 (31%), Positives = 6/19 (31%)
Query: 563 PPPPPPPGGMGPPPPPMPG 581
P G PP P P
Sbjct: 135 AEPTKAGRGASQPPTPTPA 153
>d1nnxa_ b.40.10.1 (A:) Hypothetical protein YgiW {Escherichia coli
[TaxId: 562]}
Length = 106
Score = 26.6 bits (59), Expect = 5.9
Identities = 11/39 (28%), Positives = 17/39 (43%), Gaps = 1/39 (2%)
Query: 346 KDASEDVSVQLKVFI-EHKEEDYYEFIQRFDNVRMEIDD 383
K +D V L+ I E +D Y F + ++ID
Sbjct: 31 KSLRDDTWVTLRGNIVERISDDLYVFKDASGTINVDIDH 69
>d1np7a2 c.28.1.1 (A:1-204) Cryptochrome {Synechocystis sp., pcc
6803 [TaxId: 1143]}
Length = 204
Score = 26.9 bits (58), Expect = 9.3
Identities = 8/31 (25%), Positives = 11/31 (35%)
Query: 562 PPPPPPPPGGMGPPPPPMPGMPGPPPPPMPE 592
P P + P P + PPP P+
Sbjct: 171 IRPCFFAPSQLLPSPNIKLELTAPPPEFFPQ 201
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.317 0.134 0.380
Gapped
Lambda K H
0.267 0.0614 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 3,397,510
Number of extensions: 169177
Number of successful extensions: 725
Number of sequences better than 10.0: 1
Number of HSP's gapped: 673
Number of HSP's successfully gapped: 61
Length of query: 927
Length of database: 2,407,596
Length adjustment: 94
Effective length of query: 833
Effective length of database: 1,116,976
Effective search space: 930441008
Effective search space used: 930441008
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 57 (26.0 bits)