BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy15123
(278 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2BNX|A Chain A, Crystal Structure Of The Dimeric Regulatory Domain Of
Mouse Diaphaneous-Related Formin (Drf), Mdia1
pdb|2BNX|B Chain B, Crystal Structure Of The Dimeric Regulatory Domain Of
Mouse Diaphaneous-Related Formin (Drf), Mdia1
Length = 386
Score = 130 bits (328), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 64/134 (47%), Positives = 93/134 (69%), Gaps = 1/134 (0%)
Query: 116 YDLLDALEKDASEDVSVQLKVFIEHKEEDYYEFIQRFDNVRMEIDDVNDCFETVRNMVMD 175
+ +L L + +ED+ VQL VF E +ED+++ R D++RME+DD + F+ + N V D
Sbjct: 205 HQVLQELREIENEDMKVQLCVFDEQGDEDFFDLKGRLDDIRMEMDDFGEVFQIILNTVKD 264
Query: 176 SACEPYLLSILQHLLFIRDDQYVRLAYYKLLEECVSQIVLHRGGCDPDFRSSRRFQLDVQ 235
S EP+ LSILQHLL +R+D R YYKL+EECVSQIVLH+ G DPDF+ R Q+D++
Sbjct: 265 SKAEPHFLSILQHLLLVRNDYEARPQYYKLIEECVSQIVLHKNGTDPDFK-CRHLQIDIE 323
Query: 236 PLVEHLAEKSKTEE 249
LV+ + +K+K E+
Sbjct: 324 RLVDQMIDKTKVEK 337
>pdb|3O4X|A Chain A, Crystal Structure Of Complex Between Amino And Carboxy
Terminal Fragments Of Mdia1
pdb|3O4X|B Chain B, Crystal Structure Of Complex Between Amino And Carboxy
Terminal Fragments Of Mdia1
pdb|3O4X|C Chain C, Crystal Structure Of Complex Between Amino And Carboxy
Terminal Fragments Of Mdia1
pdb|3O4X|D Chain D, Crystal Structure Of Complex Between Amino And Carboxy
Terminal Fragments Of Mdia1
Length = 330
Score = 124 bits (310), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 61/125 (48%), Positives = 86/125 (68%), Gaps = 1/125 (0%)
Query: 116 YDLLDALEKDASEDVSVQLKVFIEHKEEDYYEFIQRFDNVRMEIDDVNDCFETVRNMVMD 175
+ +L L + +ED+ VQL VF E +ED+++ R D++RME+DD + F+ + N V D
Sbjct: 207 HQVLQELREIENEDMKVQLCVFDEQGDEDFFDLKGRLDDIRMEMDDFGEVFQIILNTVKD 266
Query: 176 SACEPYLLSILQHLLFIRDDQYVRLAYYKLLEECVSQIVLHRGGCDPDFRSSRRFQLDVQ 235
S EP+ LSILQHLL +R+D R YYKL+EECVSQIVLH+ G DPDF+ R Q+D++
Sbjct: 267 SKAEPHFLSILQHLLLVRNDYEARPQYYKLIEECVSQIVLHKNGTDPDFK-CRHLQIDIE 325
Query: 236 PLVEH 240
LV+
Sbjct: 326 RLVDQ 330
>pdb|3OBV|A Chain A, Autoinhibited Formin Mdia1 Structure
pdb|3OBV|B Chain B, Autoinhibited Formin Mdia1 Structure
pdb|3OBV|C Chain C, Autoinhibited Formin Mdia1 Structure
pdb|3OBV|D Chain D, Autoinhibited Formin Mdia1 Structure
Length = 327
Score = 123 bits (309), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 61/124 (49%), Positives = 86/124 (69%), Gaps = 1/124 (0%)
Query: 116 YDLLDALEKDASEDVSVQLKVFIEHKEEDYYEFIQRFDNVRMEIDDVNDCFETVRNMVMD 175
+ +L L + +ED+ VQL VF E +ED+++ R D++RME+DD + F+ + N V D
Sbjct: 205 HQVLQELREIENEDMKVQLCVFDEQGDEDFFDLKGRLDDIRMEMDDFGEVFQIILNTVKD 264
Query: 176 SACEPYLLSILQHLLFIRDDQYVRLAYYKLLEECVSQIVLHRGGCDPDFRSSRRFQLDVQ 235
S EP+ LSILQHLL +R+D R YYKL+EECVSQIVLH+ G DPDF+ R Q+D++
Sbjct: 265 SKAEPHFLSILQHLLLVRNDYEARPQYYKLIEECVSQIVLHKNGTDPDFK-CRHLQIDIE 323
Query: 236 PLVE 239
LV+
Sbjct: 324 RLVD 327
>pdb|1Z2C|B Chain B, Crystal Structure Of Mdia1 Gbd-Fh3 In Complex With Rhoc-
Gmppnp
pdb|1Z2C|D Chain D, Crystal Structure Of Mdia1 Gbd-Fh3 In Complex With Rhoc-
Gmppnp
Length = 383
Score = 119 bits (299), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 59/118 (50%), Positives = 81/118 (68%), Gaps = 1/118 (0%)
Query: 116 YDLLDALEKDASEDVSVQLKVFIEHKEEDYYEFIQRFDNVRMEIDDVNDCFETVRNMVMD 175
+ +L L + +ED+ VQL VF E +ED+++ R D++RME+DD + F+ + N V D
Sbjct: 267 HQVLQELREIENEDMKVQLCVFDEQGDEDFFDLKGRLDDIRMEMDDFGEVFQIILNTVKD 326
Query: 176 SACEPYLLSILQHLLFIRDDQYVRLAYYKLLEECVSQIVLHRGGCDPDFRSSRRFQLD 233
S EP+ LSILQHLL +R+D R YYKL+EECVSQIVLH+ G DPDF+ R Q+D
Sbjct: 327 SKAEPHFLSILQHLLLVRNDYEARPQYYKLIEECVSQIVLHKNGTDPDFK-CRHLQID 383
>pdb|3EG5|B Chain B, Crystal Structure Of Mdia1-Tsh Gbd-Fh3 In Complex With
Cdc42-Gmppnp
pdb|3EG5|D Chain D, Crystal Structure Of Mdia1-Tsh Gbd-Fh3 In Complex With
Cdc42-Gmppnp
Length = 383
Score = 119 bits (299), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 59/118 (50%), Positives = 81/118 (68%), Gaps = 1/118 (0%)
Query: 116 YDLLDALEKDASEDVSVQLKVFIEHKEEDYYEFIQRFDNVRMEIDDVNDCFETVRNMVMD 175
+ +L L + +ED+ VQL VF E +ED+++ R D++RME+DD + F+ + N V D
Sbjct: 267 HQVLQELREIENEDMKVQLCVFDEQGDEDFFDLKGRLDDIRMEMDDFGEVFQIILNTVKD 326
Query: 176 SACEPYLLSILQHLLFIRDDQYVRLAYYKLLEECVSQIVLHRGGCDPDFRSSRRFQLD 233
S EP+ LSILQHLL +R+D R YYKL+EECVSQIVLH+ G DPDF+ R Q+D
Sbjct: 327 SKAEPHFLSILQHLLLVRNDYEARPQYYKLIEECVSQIVLHKNGTDPDFK-CRHLQID 383
>pdb|2BAP|B Chain B, Crystal Structure Of The N-Terminal Mdia1 Armadillo Repeat
Region And Dimerisation Domain In Complex With The Mdia1
Autoregulatory Domain (Dad)
pdb|2BAP|A Chain A, Crystal Structure Of The N-Terminal Mdia1 Armadillo Repeat
Region And Dimerisation Domain In Complex With The Mdia1
Autoregulatory Domain (Dad)
Length = 317
Score = 119 bits (298), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 59/118 (50%), Positives = 81/118 (68%), Gaps = 1/118 (0%)
Query: 116 YDLLDALEKDASEDVSVQLKVFIEHKEEDYYEFIQRFDNVRMEIDDVNDCFETVRNMVMD 175
+ +L L + +ED+ VQL VF E +ED+++ R D++RME+DD + F+ + N V D
Sbjct: 201 HQVLQELREIENEDMKVQLCVFDEQGDEDFFDLKGRLDDIRMEMDDFGEVFQIILNTVKD 260
Query: 176 SACEPYLLSILQHLLFIRDDQYVRLAYYKLLEECVSQIVLHRGGCDPDFRSSRRFQLD 233
S EP+ LSILQHLL +R+D R YYKL+EECVSQIVLH+ G DPDF+ R Q+D
Sbjct: 261 SKAEPHFLSILQHLLLVRNDYEARPQYYKLIEECVSQIVLHKNGTDPDFK-CRHLQID 317
>pdb|3IQW|A Chain A, Amppnp Complex Of C. Therm. Get3
pdb|3IQW|B Chain B, Amppnp Complex Of C. Therm. Get3
pdb|3IQX|A Chain A, Adp Complex Of C.Therm. Get3 In Closed Form
pdb|3IQX|B Chain B, Adp Complex Of C.Therm. Get3 In Closed Form
Length = 334
Score = 29.6 bits (65), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 42/83 (50%), Gaps = 7/83 (8%)
Query: 149 IQRFDNVRMEIDDVNDCFETVRNMVMDSACEPYLLSILQHLLFIRDDQYVRLAYYKLLEE 208
+++ D++R+ I +VN F+ R C P LS+ + I++ LA Y +
Sbjct: 200 MEKLDSLRVTISEVNAQFKDERLTTFVCVCIPEFLSLYETERMIQE-----LANYGIDTH 254
Query: 209 C--VSQIVLHRGGCDPDFRSSRR 229
C V+Q++ + G D + ++RR
Sbjct: 255 CIVVNQLLFPKPGSDCEQCTARR 277
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.142 0.427
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,503,057
Number of Sequences: 62578
Number of extensions: 357169
Number of successful extensions: 896
Number of sequences better than 100.0: 14
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 887
Number of HSP's gapped (non-prelim): 14
length of query: 278
length of database: 14,973,337
effective HSP length: 98
effective length of query: 180
effective length of database: 8,840,693
effective search space: 1591324740
effective search space used: 1591324740
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (24.3 bits)