Query psy15123
Match_columns 278
No_of_seqs 177 out of 300
Neff 5.9
Searched_HMMs 29240
Date Fri Aug 16 21:12:33 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy15123.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/15123hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2bnx_A Diaphanous protein homo 100.0 7.1E-42 2.4E-46 327.5 4.1 235 21-265 117-354 (386)
2 3eg5_B Protein diaphanous homo 100.0 1.3E-37 4.5E-42 297.7 6.8 203 21-233 179-383 (383)
3 2f31_A Diaphanous protein homo 99.1 7.8E-12 2.7E-16 111.4 0.6 119 21-148 113-233 (233)
4 4dvg_B Diaphanous protein; cyt 80.4 1.4 4.8E-05 38.8 3.9 76 95-171 250-330 (353)
5 2qfz_A TBC1 domain family memb 55.5 1.9 6.5E-05 39.4 -0.8 53 2-56 285-338 (345)
6 4gow_A Potassium voltage-gated 53.0 2.9 9.8E-05 30.2 0.0 30 75-126 30-59 (72)
7 2pnv_A Small conductance calci 52.9 9.1 0.00031 25.1 2.4 33 236-268 5-40 (43)
8 3qye_A TBC1 domain family memb 46.3 2.5 8.6E-05 38.2 -1.5 50 2-55 261-310 (331)
9 2wuj_A Septum site-determining 42.7 10 0.00034 26.1 1.5 33 233-266 24-56 (57)
10 2jo8_A Serine/threonine-protei 35.3 1E+02 0.0035 20.8 5.5 41 222-265 2-42 (51)
11 1a92_A Delta antigen; leucine 34.9 70 0.0024 21.4 4.6 33 235-267 3-37 (50)
12 1fkm_A Protein (GYP1P), ORF YO 24.5 10 0.00035 35.5 -1.3 48 2-52 332-380 (396)
13 3hzj_A Rabgap1L, RAB GTPase-ac 23.9 2.1 7.1E-05 38.5 -6.0 60 2-64 227-290 (310)
14 3ljm_A Coil Ser L9C; de novo d 20.2 1.1E+02 0.0038 18.0 3.1 18 247-264 11-28 (31)
No 1
>2bnx_A Diaphanous protein homolog 1; autoinhibition, actin, nucleation, cytoskeleton, structural; 2.4A {Mus musculus} SCOP: a.118.1.23 PDB: 3o4x_A 3obv_A* 2bap_B
Probab=100.00 E-value=7.1e-42 Score=327.48 Aligned_cols=235 Identities=31% Similarity=0.462 Sum_probs=186.8
Q ss_pred HHHHHHHHhcCCCCCCc-CC-hhhHHHHHHHHhhcCCCceeeeccCCCCCcCCccccccccCChHHHhccCCCCCCCCCC
Q psy15123 21 KEKIIEALSLLPCGLER-DD-VSDFCSLAQYYDYKTPRSFKTVTLADPEDEDGEIEVDRCKYDMKKIIEFPGFNVRPPKG 98 (278)
Q Consensus 21 k~~~~~~l~~~p~~l~~-~d-v~d~~~l~~~y~~~Tp~s~r~~~l~~~~~e~~~i~~~lc~~~v~eil~~~~~~V~~~~~ 98 (278)
|..+++.|.. -|..+. ++ +.-..+-..+|... .+..|+..+++.....+.++ |.+ ..+.+.|..|.++++
T Consensus 117 r~~vleLL~a-lc~~~~~~G~~~~VL~Al~~~~~~-~e~~RF~~lv~~l~~~~~~e-----~~~-a~m~lIN~lv~~~~d 188 (386)
T 2bnx_A 117 MIDAAKLLSA-LCILPQPEDMNERVLEAMTERAEM-DEVERFQPLLDGLKSGTSIA-----LKV-GCLQLINALITPAEE 188 (386)
T ss_dssp HHHHHHHHHH-HHTCCSSTTHHHHHHHHHHHHHHH-HTSCTTHHHHHHTSTTSCHH-----HHH-HHHHHHHHHHTTCSC
T ss_pred HHHHHHHHHH-HHcCCCCCChHHHHHHHHHHHHHh-CchhhHHHHHHHHHcCChHH-----HHH-HHHHHHHHHHCCCCC
Confidence 4456666654 566664 67 88888888888653 45667666653221111111 111 246667777788999
Q ss_pred CccccccChhHHhhchhhHHHHHhhccCChhHHHHHHHHHhhHHhHHHHHHhhhcCccccCCCHHHHHHHHHHhcCCCCC
Q psy15123 99 TWPLDQTRPADSINRINYDLLDALEKDASEDVSVQLKVFIEHKEEDYYEFIQRFDNVRMEIDDVNDCFETVRNMVMDSAC 178 (278)
Q Consensus 99 ~~~r~~lR~~ef~~~Gl~~il~kLr~~e~~~L~~QldvFEe~~~eD~eEL~~r~~~i~~D~~d~~~vf~~L~~~v~~T~a 178 (278)
+.+|+|+|+ ||.++|+.+++++||..++++|++||++|++.+++|++|+.+|++++++|++||.+||++|++++++|++
T Consensus 189 l~~R~~LR~-Ef~~~GL~~il~~Lr~~~~~~L~~Qi~~fe~~~~eD~~el~~r~~~i~~d~~d~~~~~~~l~~~~~~t~~ 267 (386)
T 2bnx_A 189 LDFRVHIRS-ELMRLGLHQVLQELREIENEDMKVQLCVFDEQGDEDFFDLKGRLDDIRMEMDDFGEVFQIILNTVKDSKA 267 (386)
T ss_dssp HHHHHHHHH-HHHHTTHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHTTSTH
T ss_pred HHHHHHHHH-HHHHCChHHHHHHHhccCChhHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCHHHHHHHHHHHHcCCCc
Confidence 999999999 9999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHhcCccCcchhHhHHHHHHHHHHhhhhhccCCCCCCCccccccCCCHHHHHHHHHHhhH-HHHHHHHHHHH
Q psy15123 179 EPYLLSILQHLLFIRDDQYVRLAYYKLLEECVSQIVLHRGGCDPDFRSSRRFQLDVQPLVEHLAEKSK-TEEDRRVEDLS 257 (278)
Q Consensus 179 ~~~fLSiLQHLLli~~d~~~~~~yw~LiD~lV~qIVL~~~g~DpDf~~~~~~~i~V~~li~~lv~~~r-e~~e~~~~eL~ 257 (278)
++||+|||||||++++|+..+++||+|||+||+|||+|++|.||||+++ +|+++|++|+++|+++++ +++++++++|+
T Consensus 268 ~~~flSiLQhLLli~~d~~~~~~~~~Lid~~v~qivl~~~~~Dpd~~~~-~l~~~v~~l~d~l~~~~~~~~~~~~~~e~~ 346 (386)
T 2bnx_A 268 EPHFLSILQHLLLVRNDYEARPQYYKLIEECVSQIVLHKNGTDPDFKCR-HLQIDIERLVDQMIDKTKVEKSEAKATELE 346 (386)
T ss_dssp HHHHHHHHHHHTTSCCCTTTHHHHHHHHHHHHHHHHTCGGGCCCCTTCS-CCCCCCTTTC-----CTHHHHHHTTTCC--
T ss_pred hhHHHHHHHHHHhCCCcchhHHHHHHHHHHHHHHHHhccCCCCCCcccc-cccchHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 9999999999999999988899999999999999999999999999876 899999999999999988 77888888888
Q ss_pred HHhHhhhc
Q psy15123 258 AFLFKYGL 265 (278)
Q Consensus 258 kkle~~~~ 265 (278)
||+|+...
T Consensus 347 kklee~~~ 354 (386)
T 2bnx_A 347 KKLDSELT 354 (386)
T ss_dssp --------
T ss_pred HHHHHHHH
Confidence 88877654
No 2
>3eg5_B Protein diaphanous homolog 1; protein-protein complex, RHO proteins, formins, armadillo repeat, G-protein, GTPase, alternative splicing; HET: GNP; 2.70A {Mus musculus} SCOP: a.118.1.23 PDB: 1z2c_B*
Probab=100.00 E-value=1.3e-37 Score=297.75 Aligned_cols=203 Identities=33% Similarity=0.489 Sum_probs=158.3
Q ss_pred HHHHHHHHhcCCCCCCc-CC-hhhHHHHHHHHhhcCCCceeeeccCCCCCcCCccccccccCChHHHhccCCCCCCCCCC
Q psy15123 21 KEKIIEALSLLPCGLER-DD-VSDFCSLAQYYDYKTPRSFKTVTLADPEDEDGEIEVDRCKYDMKKIIEFPGFNVRPPKG 98 (278)
Q Consensus 21 k~~~~~~l~~~p~~l~~-~d-v~d~~~l~~~y~~~Tp~s~r~~~l~~~~~e~~~i~~~lc~~~v~eil~~~~~~V~~~~~ 98 (278)
|..+++.|.. -|..+. ++ +.-..+-..+|.. ..+..|+..+.+.....+.+ . |-+ ..+.+.|..+.++++
T Consensus 179 ~~~aleLL~~-lc~~~~~~gG~~~VL~Al~~~~~-~~e~~RF~~lv~~L~~~~~~--e---~~~-~~m~lIN~li~~~~d 250 (383)
T 3eg5_B 179 MIDAAKLLSA-LCILPQPEDMNERVLEAMTERAE-MDEVERFQPLLDGLKSGTSI--A---LKV-GCLQLINALITPAEE 250 (383)
T ss_dssp HHHHHHHHHH-HHTCCSSTTHHHHHHHHHHHHHH-HHTSCTTHHHHHTTSTTSCH--H---HHH-HHHHHHHHHHTTCCC
T ss_pred HHHHHHHHHH-HHhCcCcCCcHHHHHHHHHHHHH-hCCCCcHHHHHHHHHccCcH--H---HHH-HHHHHHHHHHcCCCC
Confidence 4455655533 455653 54 9999999999987 67788888766433221111 1 111 235566666788899
Q ss_pred CccccccChhHHhhchhhHHHHHhhccCChhHHHHHHHHHhhHHhHHHHHHhhhcCccccCCCHHHHHHHHHHhcCCCCC
Q psy15123 99 TWPLDQTRPADSINRINYDLLDALEKDASEDVSVQLKVFIEHKEEDYYEFIQRFDNVRMEIDDVNDCFETVRNMVMDSAC 178 (278)
Q Consensus 99 ~~~r~~lR~~ef~~~Gl~~il~kLr~~e~~~L~~QldvFEe~~~eD~eEL~~r~~~i~~D~~d~~~vf~~L~~~v~~T~a 178 (278)
+.+|+|+|+ ||.++|+.+++++||..++++|.+||++|++.+++|++|+.+|++++++|++||.+||++|++++++|++
T Consensus 251 l~~R~~lR~-ef~~~Gl~~il~~lr~~~~~~L~~Qi~~fe~~~~eD~~el~~r~~~~~~d~~d~~~~~~~l~~~~~~t~a 329 (383)
T 3eg5_B 251 LDFRVHIRS-ELMRLGLHQVLQELREIENEDMKVQLCVFDEQGDEDFFDLKGRLDDIRMEMDDFGEVFQIILNTVKDSKA 329 (383)
T ss_dssp HHHHHHHHH-HHHHTTHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHTTTSTT
T ss_pred HHHHHHHHH-HHHHCChHHHHHHHhcCCChhHHHHHHHHHHHHHHhHHHHHhhccccCcCcCCHHHHHHHHHHHhcCCcc
Confidence 999999999 9999999999999999999999999999999999999999999999899999999999999999999999
Q ss_pred hhhHHHHHHHhcCccCcchhHhHHHHHHHHHHhhhhhccCCCCCCCccccccCCC
Q psy15123 179 EPYLLSILQHLLFIRDDQYVRLAYYKLLEECVSQIVLHRGGCDPDFRSSRRFQLD 233 (278)
Q Consensus 179 ~~~fLSiLQHLLli~~d~~~~~~yw~LiD~lV~qIVL~~~g~DpDf~~~~~~~i~ 233 (278)
++||+|||||||++++|+..+++||+|||+||+|||||++|+||||+++ +|++|
T Consensus 330 ~~~flSiLQhLlli~~d~~~~~~~~~Lid~~v~qivl~~~g~dpd~~~~-~~~~~ 383 (383)
T 3eg5_B 330 EPHFLSILQHLLLVRNDYEARPQYYKLIEECVSQIVLHKNGTDPDFKCR-HLQID 383 (383)
T ss_dssp HHHHHHHHHHTTCSCSSCTTHHHHHHHHHHHHHHHHCC-----------------
T ss_pred hHHHHHHHHHHHhccCCchhHHHHHHHHHHHHHHHHhccCCCCCCCCcc-CCCCC
Confidence 9999999999999999999999999999999999999999999999977 66554
No 3
>2f31_A Diaphanous protein homolog 1; formin,MDIA1, protein-protein complex, armadillo repeats, structural protein; 2.10A {Mus musculus}
Probab=99.12 E-value=7.8e-12 Score=111.43 Aligned_cols=119 Identities=18% Similarity=0.168 Sum_probs=90.5
Q ss_pred HHHHHHHHhcCCCCCCc-CC-hhhHHHHHHHHhhcCCCceeeeccCCCCCcCCccccccccCChHHHhccCCCCCCCCCC
Q psy15123 21 KEKIIEALSLLPCGLER-DD-VSDFCSLAQYYDYKTPRSFKTVTLADPEDEDGEIEVDRCKYDMKKIIEFPGFNVRPPKG 98 (278)
Q Consensus 21 k~~~~~~l~~~p~~l~~-~d-v~d~~~l~~~y~~~Tp~s~r~~~l~~~~~e~~~i~~~lc~~~v~eil~~~~~~V~~~~~ 98 (278)
|..+++.|.. -|..+. ++ +.-..+-..+|... .+..|+..+.......+.++ |.+ ..+.+.|..|.++++
T Consensus 113 r~~~leLL~~-lc~~~~~~G~~~~VL~Al~~~~~~-~e~~RF~~lv~~l~~~~~~e-----~~~-~~m~lIN~li~~~~d 184 (233)
T 2f31_A 113 MIDAAKLLSA-LCILPQPEDMNERVLEAMTERAEM-DEVERFQPLLDGLKSGTSIA-----LKV-GCLQLINALITPAEE 184 (233)
T ss_dssp HHHHHHHHHH-HHTCSSSSCHHHHHHHHHHHHHHH-HTSCTTHHHHHTTSTTSCHH-----HHH-HHHHHHHHHHTTCCC
T ss_pred HHHHHHHHHH-HHhCCCCCChHHHHHHHHHHHHHh-CCcchHHHHHHHHhcCChHH-----HHH-HHHHHHHHHHCCCCC
Confidence 4566666664 466664 68 88888888888663 56677776653221111111 111 246666767788899
Q ss_pred CccccccChhHHhhchhhHHHHHhhccCChhHHHHHHHHHhhHHhHHHHH
Q psy15123 99 TWPLDQTRPADSINRINYDLLDALEKDASEDVSVQLKVFIEHKEEDYYEF 148 (278)
Q Consensus 99 ~~~r~~lR~~ef~~~Gl~~il~kLr~~e~~~L~~QldvFEe~~~eD~eEL 148 (278)
..+|+|+|+ ||.++|+.+++++||..++++|+.||++|++.+++|++||
T Consensus 185 l~~R~~lR~-ef~~~Gl~~il~~l~~~~~~~L~~Qi~~fe~~~~eD~~el 233 (233)
T 2f31_A 185 LDFRVHIRS-ELMRLGLHQVLQELREIENEDMKVQLCVFDEQGDEDFFDL 233 (233)
T ss_dssp HHHHHHHHH-HHHHTTHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHH-HHHHCChHHHHHHHhccCCHHHHHHHHHHHHHHHhCHhhC
Confidence 999999999 9999999999999999999999999999999999999985
No 4
>4dvg_B Diaphanous protein; cytoskeleton, armadillo repeat, GTPase-binding domain, nucle binding, signaling protein, lipoprotein; HET: GSP; 2.60A {Entamoeba histolytica}
Probab=80.41 E-value=1.4 Score=38.85 Aligned_cols=76 Identities=16% Similarity=0.189 Sum_probs=51.6
Q ss_pred CCCCCccccccChhHHhhchhhHHHHHhhccC---ChhHHHHHHHHHhhHHhHHHHHHhhhcCcc--ccCCCHHHHHHHH
Q psy15123 95 PPKGTWPLDQTRPADSINRINYDLLDALEKDA---SEDVSVQLKVFIEHKEEDYYEFIQRFDNVR--MEIDDVNDCFETV 169 (278)
Q Consensus 95 ~~~~~~~r~~lR~~ef~~~Gl~~il~kLr~~e---~~~L~~QldvFEe~~~eD~eEL~~r~~~i~--~D~~d~~~vf~~L 169 (278)
..+.+.-|++.|+ -|+..|+-.-++.++..+ -+.+...|.-|-+.-++|-.|...||++.+ +|+.+...+-+.+
T Consensus 250 dqpelehrmdvrn-sfieiglvnelenmkntewmkidkikdsindffdsweedkkevesrfddlkqvvdfestkslnnyv 328 (353)
T 4dvg_B 250 DQPELEHRMDVRN-SFIEIGLVNELENMKNTEWMKIDKIKDSINDFFDSWEEDKKEVESRFDDLKQVVDFESTKSLNNYV 328 (353)
T ss_dssp CCSSHHHHHHHHH-HHHTTTHHHHHHHHHTSGGGGSHHHHHHHHHHHHHHHHHHHHHHHHHTTC----------------
T ss_pred cchhhHhhhhhhh-hheeeehhhHhhhccCccceehhhHHhhHHHHHhhHHhhHHHHHHhhhhHHHHhcccccchHHHHH
Confidence 4556889999999 999999999999999865 466667788888888999999999999864 6777766554443
Q ss_pred HH
Q psy15123 170 RN 171 (278)
Q Consensus 170 ~~ 171 (278)
-.
T Consensus 329 te 330 (353)
T 4dvg_B 329 TE 330 (353)
T ss_dssp --
T ss_pred HH
Confidence 33
No 5
>2qfz_A TBC1 domain family member 22A; RAB-GAP, GTPase activator, structural genomics, structural genomics consortium, SGC, hydrolase activator; 2.10A {Homo sapiens} PDB: 3dzx_A
Probab=55.54 E-value=1.9 Score=39.36 Aligned_cols=53 Identities=19% Similarity=0.278 Sum_probs=41.4
Q ss_pred EEEEEEcchhhhhccCCCcHHHHHHHHhcCCCC-CCcCChhhHHHHHHHHhhcCCC
Q psy15123 2 SIVYIFGCRDQILALKDEPKEKIIEALSLLPCG-LERDDVSDFCSLAQYYDYKTPR 56 (278)
Q Consensus 2 ~lv~~in~k~~il~~~~~~k~~~~~~l~~~p~~-l~~~dv~d~~~l~~~y~~~Tp~ 56 (278)
|+.+|...+++||+.. +-++++.+|.++|.. .+.+|++.+++-|..+...+..
T Consensus 285 ~~AiL~~~~~~ll~~~--d~~~il~~L~~~p~~~~~~~di~~ll~~A~~l~~~~~~ 338 (345)
T 2qfz_A 285 CAAFLVRWRKEILEEK--DFQELLLFLQNLPTAHWDDEDISLLLAEAYRLKFAFAD 338 (345)
T ss_dssp HHHHHHHTHHHHHHCC--CHHHHHHHHTSCSCTTCCHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHhhC--CHHHHHHHHHcCCCcCCchhHHHHHHHHHHHHHHHHHh
Confidence 3455677899999753 489999999999986 4567999999999988887643
No 6
>4gow_A Potassium voltage-gated channel subfamily KQT MEM; protein complex, protein binding, ION channel, calmodulin, P channel; 2.60A {Homo sapiens}
Probab=52.99 E-value=2.9 Score=30.24 Aligned_cols=30 Identities=20% Similarity=0.314 Sum_probs=0.0
Q ss_pred cccccCChHHHhccCCCCCCCCCCCccccccChhHHhhchhhHHHHHhhccC
Q psy15123 75 VDRCKYDMKKIIEFPGFNVRPPKGTWPLDQTRPADSINRINYDLLDALEKDA 126 (278)
Q Consensus 75 ~~lc~~~v~eil~~~~~~V~~~~~~~~r~~lR~~ef~~~Gl~~il~kLr~~e 126 (278)
.++.||||++++ |+|++|+.+.+.+.+.++
T Consensus 30 ealrPYDVkDVI----------------------EQYSaGHldml~RiK~LQ 59 (72)
T 4gow_A 30 ETLRPYDVKDVI----------------------EQYSAGHLDMLGRIKSLQ 59 (72)
T ss_dssp ----------------------------------------------------
T ss_pred HhcCcccHHHHH----------------------HHHhhhHHHHHHHHHHHH
Confidence 456688888654 788889999888887653
No 7
>2pnv_A Small conductance calcium-activated potassium channel protein 2; leucine zipper, SKCA channel, membrane protein; 2.10A {Rattus norvegicus}
Probab=52.87 E-value=9.1 Score=25.13 Aligned_cols=33 Identities=9% Similarity=0.100 Sum_probs=23.6
Q ss_pred HHHHHHHHh--hH-HHHHHHHHHHHHHhHhhhccCC
Q psy15123 236 PLVEHLAEK--SK-TEEDRRVEDLSAFLFKYGLEFP 268 (278)
Q Consensus 236 ~li~~lv~~--~r-e~~e~~~~eL~kkle~~~~e~~ 268 (278)
+++-.++.+ +| +++|++...|++||+.....+-
T Consensus 5 n~mydlvsel~~r~e~LE~Ri~~LE~KLd~L~~~l~ 40 (43)
T 2pnv_A 5 NIMYDMISDLNERSEDFEKRIVTLETKLETLIGSIH 40 (43)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444 45 8999999999999998766543
No 8
>3qye_A TBC1 domain family member 1; rabgap, RAB, myocytes, hydrolase activator; 2.20A {Homo sapiens} PDB: 3qyb_A
Probab=46.32 E-value=2.5 Score=38.24 Aligned_cols=50 Identities=10% Similarity=0.102 Sum_probs=40.3
Q ss_pred EEEEEEcchhhhhccCCCcHHHHHHHHhcCCCCCCcCChhhHHHHHHHHhhcCC
Q psy15123 2 SIVYIFGCRDQILALKDEPKEKIIEALSLLPCGLERDDVSDFCSLAQYYDYKTP 55 (278)
Q Consensus 2 ~lv~~in~k~~il~~~~~~k~~~~~~l~~~p~~l~~~dv~d~~~l~~~y~~~Tp 55 (278)
|+.|+...+++||+.+ +-++++++|.+.|..++.+|+..+++-| |..+.|
T Consensus 261 alaiL~~~~~~ll~~~--~~~~il~~l~~~~p~~~~~di~~li~~A--~~l~~s 310 (331)
T 3qye_A 261 ALSLLGSHKPLILQHE--NLETIVDFIKSTLPNLGLVQMEKTINQV--FEMDIA 310 (331)
T ss_dssp HHHHHHHTHHHHHTCC--SHHHHHHHHHHTTTCCCHHHHHHHHHHH--HHCCCH
T ss_pred HHHHHHHHHHHHhcCC--CHHHHHHHHHhhCCCCCHHHHHHHHHHH--HhCCch
Confidence 4556778899999875 5899999999977778889999999988 455444
No 9
>2wuj_A Septum site-determining protein diviva; bacterial cell division, septation, cell cycle, sporulation; 1.40A {Bacillus subtilis} PDB: 2wuk_A
Probab=42.69 E-value=10 Score=26.06 Aligned_cols=33 Identities=12% Similarity=0.131 Sum_probs=19.8
Q ss_pred CHHHHHHHHHHhhHHHHHHHHHHHHHHhHhhhcc
Q psy15123 233 DVQPLVEHLAEKSKTEEDRRVEDLSAFLFKYGLE 266 (278)
Q Consensus 233 ~V~~li~~lv~~~re~~e~~~~eL~kkle~~~~e 266 (278)
.|...++...++- +.+.+++.+|+.++++.+.+
T Consensus 24 EVD~FLd~v~~~~-~~l~~e~~~L~~~~~~l~~~ 56 (57)
T 2wuj_A 24 EVNEFLAQVRKDY-EIVLRKKTELEAKVNELDER 56 (57)
T ss_dssp HHHHHHHHHHHHH-HHHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhc
Confidence 4555566555432 57778888888888876654
No 10
>2jo8_A Serine/threonine-protein kinase 4; C-terminal domain, human mammalian sterIle 20-like kinase 1, dimer, transferase; NMR {Homo sapiens}
Probab=35.29 E-value=1e+02 Score=20.84 Aligned_cols=41 Identities=12% Similarity=0.114 Sum_probs=30.3
Q ss_pred CCCccccccCCCHHHHHHHHHHhhHHHHHHHHHHHHHHhHhhhc
Q psy15123 222 PDFRSSRRFQLDVQPLVEHLAEKSKTEEDRRVEDLSAFLFKYGL 265 (278)
Q Consensus 222 pDf~~~~~~~i~V~~li~~lv~~~re~~e~~~~eL~kkle~~~~ 265 (278)
.||... -+++++.|..++..-+ .+++++.++|.+++..|+.
T Consensus 2 gdf~fL--k~ls~eEL~~rl~~Ld-~~Me~Ei~elr~RY~~KRq 42 (51)
T 2jo8_A 2 SDYEFL--KSWTVEDLQKRLLALD-PMMEQEIEEIRQKYQSKRQ 42 (51)
T ss_dssp CCCGGG--GGSCHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH
T ss_pred CccHHH--HhCCHHHHHHHHHHcc-HHHHHHHHHHHHHHHHhHh
Confidence 466432 2689999988885422 6899999999999988764
No 11
>1a92_A Delta antigen; leucine zipper, coiled-coil, oligomerization; 1.80A {Hepatitis delta virus} SCOP: h.4.6.1 PDB: 1by0_A
Probab=34.89 E-value=70 Score=21.42 Aligned_cols=33 Identities=18% Similarity=0.219 Sum_probs=24.4
Q ss_pred HHHHHHHHHhhH--HHHHHHHHHHHHHhHhhhccC
Q psy15123 235 QPLVEHLAEKSK--TEEDRRVEDLSAFLFKYGLEF 267 (278)
Q Consensus 235 ~~li~~lv~~~r--e~~e~~~~eL~kkle~~~~e~ 267 (278)
+.++..+|+.-| +++|++.+.-++++.+.|-|=
T Consensus 3 ee~LeqWv~~Rkk~eeler~lrk~kk~iKklEdeN 37 (50)
T 1a92_A 3 EDILEQWVSGRKKLEELERDLRKLKKKIKKLEEDN 37 (50)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccC
Confidence 356778887644 888888888888887776553
No 12
>1fkm_A Protein (GYP1P), ORF YOR070C; GAP, YPT/RAB protein, vesicular trafficking, endocytosis, hydrolase, GTPase activation; 1.90A {Saccharomyces cerevisiae} SCOP: a.69.2.1 a.69.2.1 PDB: 2g77_A*
Probab=24.52 E-value=10 Score=35.49 Aligned_cols=48 Identities=17% Similarity=0.233 Sum_probs=38.1
Q ss_pred EEEEEEcchhhhhccCCCcHHHHHHHHhcCCCC-CCcCChhhHHHHHHHHhh
Q psy15123 2 SIVYIFGCRDQILALKDEPKEKIIEALSLLPCG-LERDDVSDFCSLAQYYDY 52 (278)
Q Consensus 2 ~lv~~in~k~~il~~~~~~k~~~~~~l~~~p~~-l~~~dv~d~~~l~~~y~~ 52 (278)
|+.||+..|++||++ +-++++.+|.+.|.. .+..|++.+++-|..+..
T Consensus 332 ~~AlL~~~r~~Ll~~---df~~~l~~L~~~p~~~~~~~di~~ll~~A~~l~~ 380 (396)
T 1fkm_A 332 CAAFLIKWSDQLMEM---DFQETITFLQNPPTKDWTETDIEMLLSEAFIWQS 380 (396)
T ss_dssp HHHHHHHTHHHHTTC---CHHHHHHHHTSCSCTTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhc---CHHHHHHHHhcCCCCCcccccHHHHHHHHHHHHH
Confidence 445677889999974 368899999999974 457899999999976554
No 13
>3hzj_A Rabgap1L, RAB GTPase-activating protein 1-like; structural genomics consortium, SGC, alternative splicing, GTPase activation, phosphoprotein; 2.30A {Homo sapiens}
Probab=23.85 E-value=2.1 Score=38.49 Aligned_cols=60 Identities=10% Similarity=0.165 Sum_probs=44.5
Q ss_pred EEEEEEcchhhhhccCCCcHHHHHHHHh-cCCCCCC-cCChhhHHHHHHHHhh--cCCCceeeeccC
Q psy15123 2 SIVYIFGCRDQILALKDEPKEKIIEALS-LLPCGLE-RDDVSDFCSLAQYYDY--KTPRSFKTVTLA 64 (278)
Q Consensus 2 ~lv~~in~k~~il~~~~~~k~~~~~~l~-~~p~~l~-~~dv~d~~~l~~~y~~--~Tp~s~r~~~l~ 64 (278)
|+.|+...+++||++ +-+++++++. ++|.... ..|+..+++.|..... ++..++++.|..
T Consensus 227 ~lail~~~~~~Ll~~---d~~~~l~~l~~~lp~~~~~~~d~~~ll~~A~~l~~~~~~l~~~~~ey~~ 290 (310)
T 3hzj_A 227 ALALLKTSKEDLLQA---DFEGALKFFRVQLPKRYRAEENARRLMEQACNIKVPTKKLKKYEKEYQT 290 (310)
T ss_dssp HHHHHHHTHHHHHTC---CHHHHHHHHHTHHHHTTCSHHHHHHHHHHHHHSCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcC---CHHHHHHHHHHhCcccccccccHHHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence 455677889999986 4789999985 6787665 5699999999977754 344555666654
No 14
>3ljm_A Coil Ser L9C; de novo design, three stranded coiled coil, APO, de novo Pro; 1.36A {Synthetic} PDB: 2jgo_A 1cos_A 3h5g_A 3h5f_A 3pbj_A 2x6p_C 1coi_A
Probab=20.22 E-value=1.1e+02 Score=18.02 Aligned_cols=18 Identities=11% Similarity=0.106 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHhHhhh
Q psy15123 247 TEEDRRVEDLSAFLFKYG 264 (278)
Q Consensus 247 e~~e~~~~eL~kkle~~~ 264 (278)
+.++.+...|+||||..+
T Consensus 11 aalesklqalekkleale 28 (31)
T 3ljm_A 11 AALESKLQALEKKLEALE 28 (31)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 566677777777777654
Done!