RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy15123
(278 letters)
>3eg5_B Protein diaphanous homolog 1; protein-protein complex, RHO
proteins, formins, armadillo repeat, G-protein, GTPase,
alternative splicing; HET: GNP; 2.70A {Mus musculus}
PDB: 1z2c_B*
Length = 383
Score = 115 bits (289), Expect = 3e-30
Identities = 59/118 (50%), Positives = 81/118 (68%), Gaps = 1/118 (0%)
Query: 116 YDLLDALEKDASEDVSVQLKVFIEHKEEDYYEFIQRFDNVRMEIDDVNDCFETVRNMVMD 175
+ +L L + +ED+ VQL VF E +ED+++ R D++RME+DD + F+ + N V D
Sbjct: 267 HQVLQELREIENEDMKVQLCVFDEQGDEDFFDLKGRLDDIRMEMDDFGEVFQIILNTVKD 326
Query: 176 SACEPYLLSILQHLLFIRDDQYVRLAYYKLLEECVSQIVLHRGGCDPDFRSSRRFQLD 233
S EP+ LSILQHLL +R+D R YYKL+EECVSQIVLH+ G DPDF+ R Q+D
Sbjct: 327 SKAEPHFLSILQHLLLVRNDYEARPQYYKLIEECVSQIVLHKNGTDPDFK-CRHLQID 383
>2bnx_A Diaphanous protein homolog 1; autoinhibition, actin, nucleation,
cytoskeleton, structural; 2.4A {Mus musculus} SCOP:
a.118.1.23 PDB: 3o4x_A 3obv_A* 2bap_B
Length = 386
Score = 107 bits (268), Expect = 3e-27
Identities = 64/134 (47%), Positives = 93/134 (69%), Gaps = 1/134 (0%)
Query: 116 YDLLDALEKDASEDVSVQLKVFIEHKEEDYYEFIQRFDNVRMEIDDVNDCFETVRNMVMD 175
+ +L L + +ED+ VQL VF E +ED+++ R D++RME+DD + F+ + N V D
Sbjct: 205 HQVLQELREIENEDMKVQLCVFDEQGDEDFFDLKGRLDDIRMEMDDFGEVFQIILNTVKD 264
Query: 176 SACEPYLLSILQHLLFIRDDQYVRLAYYKLLEECVSQIVLHRGGCDPDFRSSRRFQLDVQ 235
S EP+ LSILQHLL +R+D R YYKL+EECVSQIVLH+ G DPDF+ R Q+D++
Sbjct: 265 SKAEPHFLSILQHLLLVRNDYEARPQYYKLIEECVSQIVLHKNGTDPDFK-CRHLQIDIE 323
Query: 236 PLVEHLAEKSKTEE 249
LV+ + +K+K E+
Sbjct: 324 RLVDQMIDKTKVEK 337
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 46.0 bits (108), Expect = 8e-06
Identities = 46/293 (15%), Positives = 98/293 (33%), Gaps = 68/293 (23%)
Query: 14 LALKDEPKEKIIEALSLLPCGLERDDVSDFCSLAQYYDY----KTPRSFK-TVTLADPED 68
+D P+E + + + + + D + + + K + ++ + +P +
Sbjct: 313 CRPQDLPRE--VLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAE 370
Query: 69 EDGEIEVDRCKYDMKKIIEFPGFNVRPPKGT----WP-LDQTRPADSINR-INYDLLDAL 122
R +D + FP + P W + ++ +N+ Y L+
Sbjct: 371 Y-------RKMFDRLSV--FPP-SAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLV--- 417
Query: 123 EKDASE------DVSVQLKVFIEHKEE------DYYEFIQRFDNVRMEIDDVNDCFETVR 170
EK E + ++LKV +E++ D+Y + FD+ +D
Sbjct: 418 EKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDS--------DDLIPPY- 468
Query: 171 NMVMDSACEPYLLS-ILQHLLFIRDDQYV---RLAY--YKLLEECVSQIVLHRGGCDPDF 224
+D Y S I HL I + + R+ + ++ LE Q + H
Sbjct: 469 ---LDQ----YFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLE----QKIRHDSTAWNAS 517
Query: 225 RSSRRFQLDVQPLVEHLAEKSKTEEDRRVEDLSAFLFKYGLEFPSFHIFPFHN 277
S ++ ++ + E R V + FL K + + +
Sbjct: 518 GSILNTLQQLKFYKPYICDNDPKYE-RLVNAILDFLPKIE---ENLICSKYTD 566
Score = 29.8 bits (66), Expect = 1.3
Identities = 33/192 (17%), Positives = 55/192 (28%), Gaps = 51/192 (26%)
Query: 42 DFCSLAQYYDYK------TPRSFKTVTLADPEDEDGEIEVDRCKYDMKKIIEFPGFNVRP 95
DF + Y YK D +D I ++ II
Sbjct: 8 DFETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKE---EIDHIIMSKDAVSGT 64
Query: 96 PKGTWPLDQTRPA------DSINRINYDLLDALEKDASEDVSVQLKVFIEHKEEDYYEFI 149
+ W L + + + RINY L + K S+ +++IE ++ Y
Sbjct: 65 LRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYN--- 121
Query: 150 QRFDNVRMEIDDVNDCFETVRNMVMDSACEPYLLSILQHLLFIRDDQYVRLAYYKLLEEC 209
DN +V+ R L + Q LL +R + V
Sbjct: 122 ---DNQVFAKYNVS------R--------LQPYLKLRQALLELRPAKNV----------- 153
Query: 210 VSQIVLH-RGGC 220
++ G
Sbjct: 154 ----LIDGVLGS 161
Score = 29.1 bits (64), Expect = 2.0
Identities = 49/293 (16%), Positives = 90/293 (30%), Gaps = 73/293 (24%)
Query: 11 DQILALKDEPKEKIIEALSLLPCGLERDDVSDFCSLAQYYDYK-TPRSFKTVTLADPEDE 69
D I+ KD + L + + V F +YK KT
Sbjct: 52 DHIIMSKD-AVSGTLRLFWTL-LSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMT 109
Query: 70 DGEIE-VDRCKYDMKKIIEFPGFNV-RPPK----GTWPLDQTRPADSI------------ 111
IE DR D + F +NV R L + RPA ++
Sbjct: 110 RMYIEQRDRLYNDNQV---FAKYNVSRLQPYLKLRQA-LLELRPAKNVLIDGVLGSGKTW 165
Query: 112 ----------------NRINYDLLDALEKDASEDVSVQLKVFIEHKEEDYYEFIQRFDNV 155
+I + L+ ++ E V L+ + + ++ N+
Sbjct: 166 VALDVCLSYKVQCKMDFKIFW--LNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNI 223
Query: 156 RMEIDDVNDCFETVRNMVMDSACEPYLLSILQHLLFIRDDQYVRLAYYKLLE----ECVS 211
++ I + +R ++ +PY ++ L + + V+ A K C
Sbjct: 224 KLRIHSIQA---ELRRLLKS---KPY-----ENCLLVLLN--VQNA--KAWNAFNLSC-- 266
Query: 212 QI-VLHRGGCDPDFRSS-RRFQLDVQPLVEHLAEKSKTEE------DRRVEDL 256
+I + R DF S+ + + L + + D R +DL
Sbjct: 267 KILLTTRFKQVTDFLSAATTTHISLDHHSMTL-TPDEVKSLLLKYLDCRPQDL 318
>2f31_A Diaphanous protein homolog 1; formin,MDIA1, protein-protein
complex, armadillo repeats, structural protein; 2.10A
{Mus musculus}
Length = 233
Score = 35.9 bits (82), Expect = 0.008
Identities = 12/33 (36%), Positives = 21/33 (63%)
Query: 116 YDLLDALEKDASEDVSVQLKVFIEHKEEDYYEF 148
+ +L L + +ED+ VQL VF E +ED+++
Sbjct: 201 HQVLQELREIENEDMKVQLCVFDEQGDEDFFDL 233
>3u24_A Putative lipoprotein; COG4805, DUF885, structural genomics,
PSI-biology, midwest C structural genomics, MCSG, lipid
BIND protein; 2.25A {Shewanella oneidensis}
Length = 572
Score = 28.0 bits (62), Expect = 4.3
Identities = 11/72 (15%), Positives = 26/72 (36%), Gaps = 4/72 (5%)
Query: 22 EKIIEALSLLPCGLERDDVSDFCSLAQYYDYKTPRSFKTVTLADPED--EDGEIEVDRCK 79
+ I L+ L+++ F + Y+ K + + + ++ DR +
Sbjct: 218 NEHISWLNAQVSQLKKEGARSFRIGEELYEQKF-AFDIQAGM-TAKQLYQKAMVDKDRVQ 275
Query: 80 YDMKKIIEFPGF 91
+M KI +
Sbjct: 276 GEMAKITDKLWP 287
>3l8w_A Uricase, urate oxidase; oxidoreductase, URIC acid degradation,
xanthine, inhibition aspergillus flavus, peroxisome,
purine metabolism; HET: XAN 4PO; 1.00A {Aspergillus
flavus} PDB: 3l9g_A* 3lbg_A* 3ld4_A* 3bk8_A* 1r4s_A*
1r51_A* 1r56_A 1r4u_A* 1ws2_A* 1ws3_A 1xt4_A* 1xxj_A*
1xy3_A* 2fub_A* 2fxl_A* 3bjp_A* 1wrr_A* 3gko_A* 3p9o_A
2ic0_A* ...
Length = 296
Score = 27.5 bits (61), Expect = 4.7
Identities = 7/46 (15%), Positives = 18/46 (39%), Gaps = 1/46 (2%)
Query: 146 YEFIQRFDNVRMEIDDVNDCFETVRNMVMDSACEPYLLSILQHLLF 191
++ VR + + + T R + + + E S+ Q ++
Sbjct: 189 WKNFSGLQEVRSHVPKFDATWATAREVTLKTFAEDNSASV-QATMY 233
>1nnx_A Protein YGIW; structural genomics, hypothetical protein, OB-fold,
structure 2 function project, S2F, unknown function;
1.45A {Escherichia coli} SCOP: b.40.10.1
Length = 109
Score = 26.4 bits (58), Expect = 4.9
Identities = 10/39 (25%), Positives = 17/39 (43%), Gaps = 1/39 (2%)
Query: 124 KDASEDVSVQLK-VFIEHKEEDYYEFIQRFDNVRMEIDD 161
K +D V L+ +E +D Y F + ++ID
Sbjct: 32 KSLRDDTWVTLRGNIVERISDDLYVFKDASGTINVDIDH 70
>2dy3_A Alanine racemase; alpha/beta barrel, isomerase; HET: PLP; 2.10A
{Corynebacterium glutamicum}
Length = 361
Score = 27.4 bits (62), Expect = 5.4
Identities = 7/52 (13%), Positives = 19/52 (36%), Gaps = 8/52 (15%)
Query: 115 NYDLLDALEKDASEDVSVQLKV--------FIEHKEEDYYEFIQRFDNVRME 158
+ AL + +E + V +K+ E + E + + ++ +
Sbjct: 102 SPAHAKALIETDAEHIRVSIKIDSGLHRSGVDEQEWEGVFSALAAAPHIEVT 153
>2pz1_A RHO guanine nucleotide exchange factor 4; helical bundle, beta
barrel, beta sandwich, signaling protei; 2.25A {Homo
sapiens} PDB: 2dx1_A 3nmz_D 3nmx_D
Length = 466
Score = 27.2 bits (60), Expect = 6.1
Identities = 23/155 (14%), Positives = 56/155 (36%), Gaps = 14/155 (9%)
Query: 109 DSINRINYDLLDALEKDASEDVSVQLK---VFIEHKE--EDYYEFIQRFDNVRMEIDDVN 163
+ I R + ALE+ + + + F+EH+ + Y E+ N +E+ +
Sbjct: 168 EDIYRCQKAFVKALEQRFNRERPHLSELGACFLEHQADFQIYSEYCNNHPNACVELSRLT 227
Query: 164 DCFETVRNMVMDSACEPYLLSI-LQHLLFIRDDQYVRLAYYKLLEECVSQIVLHRGGCDP 222
++ I L L + Q ++ Y L +++++ +
Sbjct: 228 KL-SKYVYFFEACRLLQKMIDISLDGFL-LTPVQ--KICKYPLQ---LAELLKYTHPQHR 280
Query: 223 DFRSSRRFQLDVQPLVEHLAE-KSKTEEDRRVEDL 256
DF+ ++ + + + E K + E ++
Sbjct: 281 DFKDVEAALHAMKNVAQLINERKRRLENIDKIAQW 315
>2pgn_A Cyclohexane-1,2-dione hydrolase (CDH); three alpha/beta domains;
HET: P6G FAD TPP; 1.20A {Azoarcus SP} PDB: 2pgo_A*
Length = 589
Score = 27.1 bits (61), Expect = 6.7
Identities = 3/14 (21%), Positives = 4/14 (28%)
Query: 47 AQYYDYKTPRSFKT 60
+ PR T
Sbjct: 406 FGGAILQRPRRLVT 419
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 27.3 bits (60), Expect = 7.5
Identities = 31/190 (16%), Positives = 56/190 (29%), Gaps = 69/190 (36%)
Query: 15 ALKDE---PKEKIIEA-LSL-----LPCGLERDDVSDFCSLAQYYDYKTPRSFKTVTLAD 65
LK + P + A SL L + + + Y R T+ +A
Sbjct: 1746 DLKSKGLIPADATF-AGHSLGEYAALASLADVMSIESLVEVVFY------RG-MTMQVAV 1797
Query: 66 PEDEDGEIEVDRCKYDMKKIIEFPGFNVRPPKGTWPLDQTRPADSINRI----------- 114
P DE G R Y M + P + Q + R+
Sbjct: 1798 PRDELG-----RSNYGM--------IAINPGRVAASFSQEALQYVVERVGKRTGWLVEIV 1844
Query: 115 NYDL----------LDALEKDASEDVSVQLKVFIEHKEEDYYEFIQRFDNVRMEIDDVND 164
NY++ L AL+ + ++ +K +Q+ D + ++ +
Sbjct: 1845 NYNVENQQYVAAGDLRALDT-VTNVLN-FIK-------------LQKIDIIELQ---KSL 1886
Query: 165 CFETVRNMVM 174
E V +
Sbjct: 1887 SLEEVEGHLF 1896
>1t9b_A Acetolactate synthase, mitochondrial; acetohydroxyacid synthase,
herbicide, sulfonylurea, thiamin diphosphate, FAD,
inhibitor; HET: 1CS P25 FAD NSP P22 YF3; 2.20A
{Saccharomyces cerevisiae} SCOP: c.31.1.3 c.36.1.5
c.36.1.9 PDB: 1n0h_A* 1t9a_A* 1t9c_A* 1t9d_A* 1jsc_A*
Length = 677
Score = 26.8 bits (60), Expect = 8.4
Identities = 5/14 (35%), Positives = 10/14 (71%)
Query: 47 AQYYDYKTPRSFKT 60
AQ++ ++ P +F T
Sbjct: 495 AQHWTWRNPHTFIT 508
>2uz1_A Benzaldehyde lyase; thiamine diphosphate, thiamine pyrophosphate,
benzoin, flavoprotein; HET: TPP; 1.65A {Pseudomonas
fluorescens} PDB: 2ag1_A* 2ag0_A* 2uz1_B* 3iae_A*
3iaf_A* 3d7k_A*
Length = 563
Score = 27.1 bits (61), Expect = 8.5
Identities = 2/14 (14%), Positives = 4/14 (28%)
Query: 47 AQYYDYKTPRSFKT 60
++ P F
Sbjct: 401 SEVMSRVKPGGFLC 414
>2iht_A Carboxyethylarginine synthase; thiamin diphosphate complex,
transferase; HET: MSE TPP; 2.00A {Streptomyces
clavuligerus} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB:
1upb_A* 1upc_A* 1upa_A* 2ihu_A* 2ihv_A*
Length = 573
Score = 26.7 bits (60), Expect = 8.7
Identities = 3/14 (21%), Positives = 4/14 (28%)
Query: 47 AQYYDYKTPRSFKT 60
+ P F T
Sbjct: 418 VLFARADQPFGFLT 431
>1ybh_A Acetolactate synthase, chloroplast; acetohydroxyacid synthase,
herbicide, sulfonylurea, thiamin diphosphate, FAD,
inhibitor; HET: CIE NHE FAD P22; 2.50A {Arabidopsis
thaliana} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1yhy_A*
1yhz_A* 1yi0_A* 1yi1_A* 1z8n_A* 3ea4_A* 3e9y_A*
Length = 590
Score = 27.1 bits (61), Expect = 8.7
Identities = 7/14 (50%), Positives = 11/14 (78%)
Query: 47 AQYYDYKTPRSFKT 60
AQ+Y+YK PR + +
Sbjct: 408 AQFYNYKKPRQWLS 421
>2z0q_A XPLN, RHO guanine nucleotide exchange factor 3; DH-PH domain,
alternative splicing, cytoplasm, guanine- nucleotide
releasing factor; 1.79A {Mus musculus} PDB: 3eo2_A
Length = 346
Score = 26.6 bits (59), Expect = 9.4
Identities = 9/56 (16%), Positives = 19/56 (33%), Gaps = 4/56 (7%)
Query: 109 DSINRINYDLLDALEKDASEDVSVQL--KVFIEHKE--EDYYEFIQRFDNVRMEID 160
DS+ ++ +LL L D S + + + Y + + +D
Sbjct: 68 DSLIPLHEELLSQLRDVRKPDGSTEHVGPILVGWLPCLSSYDSYCSNQVAAKALLD 123
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.323 0.142 0.427
Gapped
Lambda K H
0.267 0.0494 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,475,123
Number of extensions: 276179
Number of successful extensions: 596
Number of sequences better than 10.0: 1
Number of HSP's gapped: 591
Number of HSP's successfully gapped: 26
Length of query: 278
Length of database: 6,701,793
Length adjustment: 92
Effective length of query: 186
Effective length of database: 4,133,061
Effective search space: 768749346
Effective search space used: 768749346
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 57 (26.3 bits)