RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy15123
         (278 letters)



>d2bnxa1 a.118.1.23 (A:133-475) Diaphanous protein homolog 1, Diap1
           (Dia1, DRF1) {Mouse (Mus musculus) [TaxId: 10090]}
          Length = 343

 Score =  145 bits (366), Expect = 5e-42
 Identities = 65/142 (45%), Positives = 96/142 (67%), Gaps = 2/142 (1%)

Query: 116 YDLLDALEKDASEDVSVQLKVFIEHKEEDYYEFIQRFDNVRMEIDDVNDCFETVRNMVMD 175
           + +L  L +  +ED+ VQL VF E  +ED+++   R D++RME+DD  + F+ + N V D
Sbjct: 203 HQVLQELREIENEDMKVQLCVFDEQGDEDFFDLKGRLDDIRMEMDDFGEVFQIILNTVKD 262

Query: 176 SACEPYLLSILQHLLFIRDDQYVRLAYYKLLEECVSQIVLHRGGCDPDFRSSRRFQLDVQ 235
           S  EP+ LSILQHLL +R+D   R  YYKL+EECVSQIVLH+ G DPDF+  R  Q+D++
Sbjct: 263 SKAEPHFLSILQHLLLVRNDYEARPQYYKLIEECVSQIVLHKNGTDPDFK-CRHLQIDIE 321

Query: 236 PLVEHLAEKSKTEEDR-RVEDL 256
            LV+ + +K+K E+   +  +L
Sbjct: 322 RLVDQMIDKTKVEKSEAKATEL 343


>d1nnxa_ b.40.10.1 (A:) Hypothetical protein YgiW {Escherichia coli
           [TaxId: 562]}
          Length = 106

 Score = 26.2 bits (58), Expect = 2.1
 Identities = 11/39 (28%), Positives = 17/39 (43%), Gaps = 1/39 (2%)

Query: 124 KDASEDVSVQLKVFI-EHKEEDYYEFIQRFDNVRMEIDD 161
           K   +D  V L+  I E   +D Y F      + ++ID 
Sbjct: 31  KSLRDDTWVTLRGNIVERISDDLYVFKDASGTINVDIDH 69


>d1ho8a_ a.118.1.9 (A:) Regulatory subunit H of the V-type ATPase
           {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
          Length = 477

 Score = 26.8 bits (59), Expect = 3.8
 Identities = 3/57 (5%), Positives = 18/57 (31%)

Query: 143 EDYYEFIQRFDNVRMEIDDVNDCFETVRNMVMDSACEPYLLSILQHLLFIRDDQYVR 199
           E      +  +++ ++ +  +    +             L+ ++  L    ++   +
Sbjct: 37  EIDASTAKALESILVKKNIGDGLSSSNNAHSGFKVNGKTLIPLIHLLSTSDNEDCKK 93


>d2cuja1 a.4.1.18 (A:8-108) Transcriptional adaptor 2-like, TADA2L
           {Mouse (Mus musculus) [TaxId: 10090]}
          Length = 101

 Score = 24.8 bits (54), Expect = 5.7
 Identities = 11/62 (17%), Positives = 23/62 (37%), Gaps = 3/62 (4%)

Query: 93  VRPPKGTWPLDQTRPADSINRIN---YDLLDALEKDASEDVSVQLKVFIEHKEEDYYEFI 149
           + P          R A  +N       + L+  EK+  + V +    ++E+K     E  
Sbjct: 5   LSPSVLMASNSGRRSAPPLNLTGLPGTEKLNEKEKELCQVVRLVPGAYLEYKSALLNECH 64

Query: 150 QR 151
           ++
Sbjct: 65  KQ 66


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.323    0.142    0.427 

Gapped
Lambda     K      H
   0.267   0.0614    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,113,699
Number of extensions: 54462
Number of successful extensions: 144
Number of sequences better than 10.0: 1
Number of HSP's gapped: 143
Number of HSP's successfully gapped: 9
Length of query: 278
Length of database: 2,407,596
Length adjustment: 84
Effective length of query: 194
Effective length of database: 1,254,276
Effective search space: 243329544
Effective search space used: 243329544
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 52 (24.1 bits)