RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy15124
(256 letters)
>1spx_A Short-chain reductase family member (5L265); parallel beta-sheet of
seven strands in the order 3214567; 2.10A
{Caenorhabditis elegans} SCOP: c.2.1.2
Length = 278
Score = 347 bits (892), Expect = e-122
Identities = 104/266 (39%), Positives = 159/266 (59%), Gaps = 12/266 (4%)
Query: 1 MN-FTGKVILVTGASSGIGAATALHLAKLDAKLAITGRNVEQLDKVSESCQS--VSKNKP 57
M F KV ++TG+S+GIG ATA+ A+ AK+ ITGR+ E+L++ + + VS+
Sbjct: 1 MTRFAEKVAIITGSSNGIGRATAVLFAREGAKVTITGRHAERLEETRQQILAAGVSEQNV 60
Query: 58 LVIQADLTSEEDTKRIIDTVVKHYQKLNVLVNNAGILEAGSIENT----SLEQYDKIMNV 113
+ AD+T++ I+ T + + KL++LVNNAG S T S+E YD +N+
Sbjct: 61 NSVVADVTTDAGQDEILSTTLGKFGKLDILVNNAGAAIPDSQSKTGTAQSIESYDATLNL 120
Query: 114 NVRSIYHLTMLAVPHLISTKGNIVNVSSV-NGLRSFPGVLAYCVSKAAVDQFTSCTALEL 172
N+RS+ LT AVPHL STKG IVN+SS+ +GL + P Y ++KAA+DQ+T TA++L
Sbjct: 121 NLRSVIALTKKAVPHLSSTKGEIVNISSIASGLHATPDFPYYSIAKAAIDQYTRNTAIDL 180
Query: 173 ASKGVRVNSVNPGVTLTNLHKNSGIDQQAYQNF---LERSKETHALGRVGNPEEVAKAIA 229
G+RVNS++PG+ T G+ ++ + F + KE G +G P+++A+ IA
Sbjct: 181 IQHGIRVNSISPGLVATGFGSAMGMPEETSKKFYSTMATMKECVPAGVMGQPQDIAEVIA 240
Query: 230 FLASDD-ASFTTGEHLTVDGGRHAMC 254
FLA +S+ G L VDGG +
Sbjct: 241 FLADRKTSSYIIGHQLVVDGGSSLIM 266
>1xkq_A Short-chain reductase family member (5D234); parrallel beta-sheet
of seven strands in the order 3214567; HET: NDP; 2.10A
{Caenorhabditis elegans} SCOP: c.2.1.2
Length = 280
Score = 345 bits (887), Expect = e-121
Identities = 97/264 (36%), Positives = 156/264 (59%), Gaps = 11/264 (4%)
Query: 2 NFTGKVILVTGASSGIGAATALHLAKLDAKLAITGRNVEQLDKVSESCQS--VSKNKPLV 59
F+ K +++TG+S+GIG TA+ A+ A + ITGR+ E+L++ + VS+ +
Sbjct: 3 RFSNKTVIITGSSNGIGRTTAILFAQEGANVTITGRSSERLEETRQIILKSGVSEKQVNS 62
Query: 60 IQADLTSEEDTKRIIDTVVKHYQKLNVLVNNAGILEAGSIENTSLEQ----YDKIMNVNV 115
+ AD+T+E+ +II++ +K + K++VLVNNAG + T +Q Y K + +N+
Sbjct: 63 VVADVTTEDGQDQIINSTLKQFGKIDVLVNNAGAAIPDAFGTTGTDQGIDIYHKTLKLNL 122
Query: 116 RSIYHLTMLAVPHLISTKGNIVNVSS-VNGLRSFPGVLAYCVSKAAVDQFTSCTALELAS 174
+++ +T PHL+++KG IVNVSS V G ++ P L Y ++KAA+DQ+T TA++LA
Sbjct: 123 QAVIEMTKKVKPHLVASKGEIVNVSSIVAGPQAQPDFLYYAIAKAALDQYTRSTAIDLAK 182
Query: 175 KGVRVNSVNPGVTLTNLHKNSGID---QQAYQNFLERSKETHALGRVGNPEEVAKAIAFL 231
G+RVNSV+PG+ T G+ Q + NF+ KE +G G PE +A I FL
Sbjct: 183 FGIRVNSVSPGMVETGFTNAMGMPDQASQKFYNFMASHKECIPIGAAGKPEHIANIILFL 242
Query: 232 ASDDASF-TTGEHLTVDGGRHAMC 254
A + SF G+ + DGG +
Sbjct: 243 ADRNLSFYILGQSIVADGGTSLVM 266
>1xhl_A Short-chain dehydrogenase/reductase family member putative
tropinone reductase-II...; parallel beta-sheet of seven
strands in the order 3214567; HET: NDP TNE; 2.40A
{Caenorhabditis elegans} SCOP: c.2.1.2
Length = 297
Score = 340 bits (875), Expect = e-119
Identities = 98/261 (37%), Positives = 147/261 (56%), Gaps = 9/261 (3%)
Query: 3 FTGKVILVTGASSGIGAATALHLAKLDAKLAITGRNVEQLDKVSESCQS--VSKNKPLVI 60
F+GK +++TG+S+GIG + A+ AK A++ ITGRN ++L++ + V K +
Sbjct: 24 FSGKSVIITGSSNGIGRSAAVIFAKEGAQVTITGRNEDRLEETKQQILKAGVPAEKINAV 83
Query: 61 QADLTSEEDTKRIIDTVVKHYQKLNVLVNNAGILEAGSIENT--SLEQYDKIMNVNVRSI 118
AD+T II+T + + K+++LVNNAG A NT +E Y K +N +++
Sbjct: 84 VADVTEASGQDDIINTTLAKFGKIDILVNNAGANLADGTANTDQPVELYQKTFKLNFQAV 143
Query: 119 YHLTMLAVPHLISTKGNIVNVSS-VNGLRSFPGVLAYCVSKAAVDQFTSCTALELASKGV 177
+T HLI TKG IVNVSS V G ++ G Y +KAA+DQ+T CTA++L GV
Sbjct: 144 IEMTQKTKEHLIKTKGEIVNVSSIVAGPQAHSGYPYYACAKAALDQYTRCTAIDLIQHGV 203
Query: 178 RVNSVNPGVTLTNLHKNSGIDQQAYQ---NFLERSKETHALGRVGNPEEVAKAIAFLASD 234
RVNSV+PG T G+ + A +F+ KE +G G PEE+A I FLA
Sbjct: 204 RVNSVSPGAVATGFMGAMGLPETASDKLYSFIGSRKECIPVGHCGKPEEIANIIVFLADR 263
Query: 235 D-ASFTTGEHLTVDGGRHAMC 254
+ +S+ G+ + DGG +
Sbjct: 264 NLSSYIIGQSIVADGGSTLVM 284
>3ucx_A Short chain dehydrogenase; ssgcid, seattle structural genomics
center for infectious DI dehydrogenase, oxidoreductase;
HET: 1PE; 1.85A {Mycobacterium smegmatis}
Length = 264
Score = 287 bits (738), Expect = 1e-98
Identities = 73/258 (28%), Positives = 122/258 (47%), Gaps = 7/258 (2%)
Query: 1 MNFTGKVILVTGASSGIGAATALHLAKLDAKLAITGRNVEQLDKVSESCQSVSKNKPLVI 60
T KV++++G +G A A+ A L + R VE+L+ V++ + + L +
Sbjct: 7 GLLTDKVVVISGVGPALGTTLARRCAEQGADLVLAARTVERLEDVAKQVTDTGR-RALSV 65
Query: 61 QADLTSEEDTKRIIDTVVKHYQKLNVLVNNAGIL-EAGSIENTSLEQYDKIMNVNVRSIY 119
D+T + ++D +K Y +++V++NNA + NT+ E + + V
Sbjct: 66 GTDITDDAQVAHLVDETMKAYGRVDVVINNAFRVPSMKPFANTTFEHMRDAIELTVFGAL 125
Query: 120 HLTMLAVPHLISTKGNIVNVSSVNGLRSFPGVLAYCVSKAAVDQFTSCTALELASKGVRV 179
L P L +KG +VNV+S+ S AY ++K+A+ + A EL KG+RV
Sbjct: 126 RLIQGFTPALEESKGAVVNVNSMVVRHSQAKYGAYKMAKSALLAMSQTLATELGEKGIRV 185
Query: 180 NSVNPGVTLT-----NLHKNSGIDQQAYQNFLERSKETHALGRVGNPEEVAKAIAFLASD 234
NSV PG +G + ++ + L R+ +EVA AI F+ASD
Sbjct: 186 NSVLPGYIWGGTLKSYFEHQAGKYGTSVEDIYNAAAAGSDLKRLPTEDEVASAILFMASD 245
Query: 235 DASFTTGEHLTVDGGRHA 252
AS TG+ L V+ G +
Sbjct: 246 LASGITGQALDVNCGEYK 263
>3kzv_A Uncharacterized oxidoreductase YIR035C; cytoplasmic protein,
unknown function, structural genomics, MCSG, protein
structure initiative; 2.00A {Saccharomyces cerevisiae}
Length = 254
Score = 281 bits (721), Expect = 4e-96
Identities = 71/253 (28%), Positives = 115/253 (45%), Gaps = 13/253 (5%)
Query: 5 GKVILVTGASSGIGAATALHLAKLDAKLAITG--RNVEQLDKVSESCQSVSKNKPLVIQA 62
GKVILVTG S GIG + L LD + G R+ L K+ E + +
Sbjct: 2 GKVILVTGVSRGIGKSIVDVLFSLDKDTVVYGVARSEAPLKKLKEKYGD----RFFYVVG 57
Query: 63 DLTSEEDTKRIIDTVVKHYQKLNVLVNNAGILE-AGSIENTSLEQYDKIMNVNVRSIYHL 121
D+T + K++++ VK + K++ LV NAG+LE ++ + + K+ ++N SI L
Sbjct: 58 DITEDSVLKQLVNAAVKGHGKIDSLVANAGVLEPVQNVNEIDVNAWKKLYDINFFSIVSL 117
Query: 122 TMLAVPHLISTKGNIVNVSSVNGLRSFPGVLAYCVSKAAVDQFTSCTALELASKGVRVNS 181
+A+P L T GN+V VSS F AY SKAA++ F A E + V+ +
Sbjct: 118 VGIALPELKKTNGNVVFVSSDACNMYFSSWGAYGSSKAALNHFAMTLANE--ERQVKAIA 175
Query: 182 VNPGVTLTNLHKN---SGIDQQAYQNFLERSKETHALGRVGNPEEVAKAIAFLASDD-AS 237
V PG+ T++ N + L+ + ++ + A A LA
Sbjct: 176 VAPGIVDTDMQVNIRENVGPSSMSAEQLKMFRGLKENNQLLDSSVPATVYAKLALHGIPD 235
Query: 238 FTTGEHLTVDGGR 250
G++L+ +
Sbjct: 236 GVNGQYLSYNDPA 248
>4fgs_A Probable dehydrogenase protein; PSI-biology, nysgrc, structural
genomics, NEW YORK structura genomics research
consortium, three layer; 1.76A {Rhizobium etli}
Length = 273
Score = 276 bits (708), Expect = 6e-94
Identities = 85/253 (33%), Positives = 121/253 (47%), Gaps = 6/253 (2%)
Query: 1 MNFTGKVILVTGASSGIGAATALHLAKLDAKLAITGRNVEQLDKVSESCQSVSKNKPLVI 60
K+ ++TGA+SGIG A A A++ ITGR + LD + I
Sbjct: 25 QRLNAKIAVITGATSGIGLAAAKRFVAEGARVFITGRRKDVLDAAIAEI----GGGAVGI 80
Query: 61 QADLTSEEDTKRIIDTVVKHYQKLNVLVNNAGILEAGSIENTSLEQYDKIMNVNVRSIYH 120
QAD + + R+ + V +++VL NAG + + EQYD + NV+ +
Sbjct: 81 QADSANLAELDRLYEKVKAEAGRIDVLFVNAGGGSMLPLGEVTEEQYDDTFDRNVKGVLF 140
Query: 121 LTMLAVPHLISTKGNIVNVSSVNGLRSFPGVLAYCVSKAAVDQFTSCTALELASKGVRVN 180
A+P L + ++V S G P Y SKAA+ F L+L +G+R+N
Sbjct: 141 TVQKALPLL-ARGSSVVLTGSTAGSTGTPAFSVYAASKAALRSFARNWILDLKDRGIRIN 199
Query: 181 SVNPGVTLTN-LHKNSGIDQQAYQNFLERSKETHALGRVGNPEEVAKAIAFLASDDASFT 239
+++PG T T L + +G D Q L +GRVG EEVA A FLASDD+SF
Sbjct: 200 TLSPGPTETTGLVELAGKDPVQQQGLLNALAAQVPMGRVGRAEEVAAAALFLASDDSSFV 259
Query: 240 TGEHLTVDGGRHA 252
TG L VDGG
Sbjct: 260 TGAELFVDGGSAQ 272
>1yde_A Retinal dehydrogenase/reductase 3; oxidoreductase, structural
genomics, structural genomics CON SGC; 2.40A {Homo
sapiens} SCOP: c.2.1.2
Length = 270
Score = 272 bits (698), Expect = 2e-92
Identities = 77/253 (30%), Positives = 124/253 (49%), Gaps = 7/253 (2%)
Query: 1 MNFTGKVILVTGASSGIGAATALHLAKLDAKLAITGRNVEQLDKVSESCQSVSKNKPLVI 60
+ GKV++VTG GIGA A++ I ++ + + + I
Sbjct: 5 TRYAGKVVVVTGGGRGIGAGIVRAFVNSGARVVICDKDESGGRALEQELPGA-----VFI 59
Query: 61 QADLTSEEDTKRIIDTVVKHYQKLNVLVNNAGIL-EAGSIENTSLEQYDKIMNVNVRSIY 119
D+T E+D K ++ ++ + +L+ +VNNAG E TS + + +++ +N+ Y
Sbjct: 60 LCDVTQEDDVKTLVSETIRRFGRLDCVVNNAGHHPPPQRPEETSAQGFRQLLELNLLGTY 119
Query: 120 HLTMLAVPHLISTKGNIVNVSSVNGLRSFPGVLAYCVSKAAVDQFTSCTALELASKGVRV 179
LT LA+P+L ++GN++N+SS+ G + Y +K AV T AL+ + GVRV
Sbjct: 120 TLTKLALPYLRKSQGNVINISSLVGAIGQAQAVPYVATKGAVTAMTKALALDESPYGVRV 179
Query: 180 NSVNPGVTLTNLHKNSGIDQQAYQNFLERSKETHALGRVGNPEEVAKAIAFLASDDASFT 239
N ++PG T L + + + LGR+G P EV A FLAS +A+F
Sbjct: 180 NCISPGNIWTPLWEELAALMPDPRASIREGMLAQPLGRMGQPAEVGAAAVFLAS-EANFC 238
Query: 240 TGEHLTVDGGRHA 252
TG L V GG
Sbjct: 239 TGIELLVTGGAEL 251
>4dqx_A Probable oxidoreductase protein; structural genomics, PSI-biology,
NEW YORK structural genomi research consortium, nysgrc;
2.00A {Rhizobium etli}
Length = 277
Score = 270 bits (694), Expect = 8e-92
Identities = 78/251 (31%), Positives = 128/251 (50%), Gaps = 5/251 (1%)
Query: 1 MNFTGKVILVTGASSGIGAATALHLAKLDAKLAITGRNVEQLDKVSESCQSVSKNKPLVI 60
M+ +V +VTG SGIG ATA AK A + + N + +V+ S K +
Sbjct: 23 MDLNQRVCIVTGGGSGIGRATAELFAKNGAYVVVADVNEDAAVRVANEIGS----KAFGV 78
Query: 61 QADLTSEEDTKRIIDTVVKHYQKLNVLVNNAGILEAGSIENTSLEQYDKIMNVNVRSIYH 120
+ D++S +D + +++ + +++VLVNNAG G++ E +D+IM+VNV+ I+
Sbjct: 79 RVDVSSAKDAESMVEKTTAKWGRVDVLVNNAGFGTTGNVVTIPEETWDRIMSVNVKGIFL 138
Query: 121 LTMLAVPHLIST-KGNIVNVSSVNGLRSFPGVLAYCVSKAAVDQFTSCTALELASKGVRV 179
+ +P + G+I+N +S + AY SK A+ T A++ A +G+RV
Sbjct: 139 CSKYVIPVMRRNGGGSIINTTSYTATSAIADRTAYVASKGAISSLTRAMAMDHAKEGIRV 198
Query: 180 NSVNPGVTLTNLHKNSGIDQQAYQNFLERSKETHALGRVGNPEEVAKAIAFLASDDASFT 239
N+V PG + + + + R+G EE+A+A+ FLASD + F
Sbjct: 199 NAVAPGTIDSPYFTKIFAEAKDPAKLRSDFNARAVMDRMGTAEEIAEAMLFLASDRSRFA 258
Query: 240 TGEHLTVDGGR 250
TG LTVDGG
Sbjct: 259 TGSILTVDGGS 269
>3vtz_A Glucose 1-dehydrogenase; rossmann fold, oxidoreductase, NAD
binding; 2.30A {Thermoplasma volcanium}
Length = 269
Score = 267 bits (686), Expect = 1e-90
Identities = 89/256 (34%), Positives = 136/256 (53%), Gaps = 19/256 (7%)
Query: 1 MN-FTGKVILVTGASSGIGAATALHLAKLDAKLAITGRNVEQLDKVSESCQSVSKNKPLV 59
M FT KV +VTG SSGIG A L + AK+ + + VS+
Sbjct: 9 MEEFTDKVAIVTGGSSGIGLAVVDALVRYGAKVVSVSLDEKSDVNVSDH----------- 57
Query: 60 IQADLTSEEDTKRIIDTVVKHYQKLNVLVNNAGILEAGSIENTSLEQYDKIMNVNVRSIY 119
+ D+T+EE+ K ++ K Y ++++LVNNAGI + + T E + +I++VNV Y
Sbjct: 58 FKIDVTNEEEVKEAVEKTTKKYGRIDILVNNAGIEQYSPLHLTPTEIWRRIIDVNVNGSY 117
Query: 120 HLTMLAVPHLIST-KGNIVNVSSVNGLRSFPGVLAYCVSKAAVDQFTSCTALELASKGVR 178
+ +P +++ G+I+N++SV + AY SK A+ T A++ A +R
Sbjct: 118 LMAKYTIPVMLAIGHGSIINIASVQSYAATKNAAAYVTSKHALLGLTRSVAIDYA-PKIR 176
Query: 179 VNSVNPGVTLTNL-----HKNSGIDQQAYQNFLERSKETHALGRVGNPEEVAKAIAFLAS 233
N+V PG +T + G D+ A + +E H +GR+G PEEVA+ +AFLAS
Sbjct: 177 CNAVCPGTIMTPMVIKAAKMEVGEDENAVERKIEEWGRQHPMGRIGRPEEVAEVVAFLAS 236
Query: 234 DDASFTTGEHLTVDGG 249
D +SF TG LTVDGG
Sbjct: 237 DRSSFITGACLTVDGG 252
>3n74_A 3-ketoacyl-(acyl-carrier-protein) reductase; seattle structural
genomics center for infectious disease, S brucellosis;
2.20A {Brucella melitensis biovar abortus}
Length = 261
Score = 266 bits (683), Expect = 3e-90
Identities = 83/258 (32%), Positives = 133/258 (51%), Gaps = 12/258 (4%)
Query: 1 MNFTGKVILVTGASSGIGAATALHLAKLDAKLAITGRNVEQLDKVSESCQSVSKNKPLVI 60
M+ GKV L+TGA SG G A AK AK+ I R+ ++V+ + L +
Sbjct: 5 MSLEGKVALITGAGSGFGEGMAKRFAKGGAKVVIVDRDKAGAERVAGEI----GDAALAV 60
Query: 61 QADLTSEEDTKRIIDTVVKHYQKLNVLVNNAGIL-EAGSIENTSLEQYDKIMNVNVRSIY 119
AD++ E D ++ + + K+++LVNNAGI + + E E++D+I+ VNVR +Y
Sbjct: 61 AADISKEADVDAAVEAALSKFGKVDILVNNAGIGHKPQNAELVEPEEFDRIVGVNVRGVY 120
Query: 120 HLTMLAVPHLI-----STKGNIVNVSSVNGLRSFPGVLAYCVSKAAVDQFTSCTALELAS 174
+T +PH + I+NV+S R P + Y +K V T A+ELA
Sbjct: 121 LMTSKLIPHFKENGAKGQECVILNVASTGAGRPRPNLAWYNATKGWVVSVTKALAIELAP 180
Query: 175 KGVRVNSVNPGVTLTNLHKNSGIDQQAYQNFLERSKETHALGRVGNPEEVAKAIAFLASD 234
+RV ++NP T L + + + ++ +++ +GR+ P+++A+A AFL S
Sbjct: 181 AKIRVVALNPVAGETPL--LTTFMGEDSEEIRKKFRDSIPMGRLLKPDDLAEAAAFLCSP 238
Query: 235 DASFTTGEHLTVDGGRHA 252
AS TG L VDGGR
Sbjct: 239 QASMITGVALDVDGGRSI 256
>2cfc_A 2-(R)-hydroxypropyl-COM dehydrogenase; NAD, oxidoreductase; HET:
NAD KPC; 1.8A {Xanthobacter autotrophicus}
Length = 250
Score = 265 bits (681), Expect = 3e-90
Identities = 88/253 (34%), Positives = 133/253 (52%), Gaps = 8/253 (3%)
Query: 5 GKVILVTGASSGIGAATALHLAKLDAKLAITGRNVEQLDKVSESCQSVSKNKPLVIQADL 64
+V +VTGASSG G A A ++A + E L++ + + +K L ++AD+
Sbjct: 2 SRVAIVTGASSGNGLAIATRFLARGDRVAALDLSAETLEETARTHWHAYADKVLRVRADV 61
Query: 65 TSEEDTKRIIDTVVKHYQKLNVLVNNAGIL---EAGSIENTSLEQYDKIMNVNVRSIYHL 121
E D I ++ + ++VLVNNAGI EAG + T +EQ+DK+M VNVR I+
Sbjct: 62 ADEGDVNAAIAATMEQFGAIDVLVNNAGITGNSEAGVLHTTPVEQFDKVMAVNVRGIFLG 121
Query: 122 TMLAVPHLISTK-GNIVNVSSVNGLRSFPGVLAYCVSKAAVDQFTSCTALELASKGVRVN 180
+PH++ G IVN++SV L +FPG AY SK AV Q T A++ A G+R N
Sbjct: 122 CRAVLPHMLLQGAGVIVNIASVASLVAFPGRSAYTTSKGAVLQLTKSVAVDYAGSGIRCN 181
Query: 181 SVNPGVTLTNLHKNSGIDQQAYQNFLERSKETHALGRVGNPEEVAKAIAFLASDDASFTT 240
+V PG+ T + + + L R +G +VA A+ FLA +DA++
Sbjct: 182 AVCPGMIETPMTQWRLDQPELRDQVLAR----IPQKEIGTAAQVADAVMFLAGEDATYVN 237
Query: 241 GEHLTVDGGRHAM 253
G L +DG A+
Sbjct: 238 GAALVMDGAYTAI 250
>2d1y_A Hypothetical protein TT0321; strucrtural genomics, thermus
thermophilus HB8, structural genomics, NPPSFA; HET: NAD;
1.65A {Thermus thermophilus} SCOP: c.2.1.2
Length = 256
Score = 266 bits (682), Expect = 3e-90
Identities = 89/254 (35%), Positives = 124/254 (48%), Gaps = 9/254 (3%)
Query: 1 MN-FTGKVILVTGASSGIGAATALHLAKLDAKLAITGRNVEQLDKVSESCQSVSKNKPLV 59
M F GK +LVTG + GIG A A A+ A +A+ E +
Sbjct: 1 MGLFAGKGVLVTGGARGIGRAIAQAFAREGALVALCDLRPEGKEVAEAI-------GGAF 53
Query: 60 IQADLTSEEDTKRIIDTVVKHYQKLNVLVNNAGILEAGSIENTSLEQYDKIMNVNVRSIY 119
Q DL E + R ++ +++VLVNNA I GS L ++ +++ VN+ +
Sbjct: 54 FQVDLEDERERVRFVEEAAYALGRVDVLVNNAAIAAPGSALTVRLPEWRRVLEVNLTAPM 113
Query: 120 HLTMLAVPHLISTK-GNIVNVSSVNGLRSFPGVLAYCVSKAAVDQFTSCTALELASKGVR 178
HL+ LA + G IVNV+SV GL + AY SK + T AL+LA +R
Sbjct: 114 HLSALAAREMRKVGGGAIVNVASVQGLFAEQENAAYNASKGGLVNLTRSLALDLAPLRIR 173
Query: 179 VNSVNPGVTLTNLHKNSGIDQQAYQNFLERSKETHALGRVGNPEEVAKAIAFLASDDASF 238
VN+V PG T + + ++ HAL R+G PEEVA+A+ FLAS+ ASF
Sbjct: 174 VNAVAPGAIATEAVLEAIALSPDPERTRRDWEDLHALRRLGKPEEVAEAVLFLASEKASF 233
Query: 239 TTGEHLTVDGGRHA 252
TG L VDGG A
Sbjct: 234 ITGAILPVDGGMTA 247
>3svt_A Short-chain type dehydrogenase/reductase; ssgcid, seattle
structural genomics center for infectious DI
oxidoreductase; 2.00A {Mycobacterium ulcerans}
Length = 281
Score = 266 bits (683), Expect = 5e-90
Identities = 77/256 (30%), Positives = 123/256 (48%), Gaps = 8/256 (3%)
Query: 1 MNFTGKVILVTGASSGIGAATALHLAKLDAKLAITGRNVEQLDKVSESCQSVSKN--KPL 58
++F + LVTG SGIG A L A + I GRN ++L + +++ N
Sbjct: 7 LSFQDRTYLVTGGGSGIGKGVAAGLVAAGASVMIVGRNPDKLAGAVQELEALGANGGAIR 66
Query: 59 VIQADLTSEEDTKRIIDTVVKHYQKLNVLVNNAGIL-EAGSIENTSLEQYDKIMNVNVRS 117
D+T+E++T R +D V + +L+ +V+ AG G I E + + +++NV
Sbjct: 67 YEPTDITNEDETARAVDAVTAWHGRLHGVVHCAGGSENIGPITQVDSEAWRRTVDLNVNG 126
Query: 118 IYHLTMLAVPHLISTK-GNIVNVSSVNGLRSFPGVLAYCVSKAAVDQFTSCTALELASKG 176
++ A ++ G+ V +SS+ + AY V+K+AVD A EL +
Sbjct: 127 TMYVLKHAAREMVRGGGGSFVGISSIAASNTHRWFGAYGVTKSAVDHLMQLAADELGASW 186
Query: 177 VRVNSVNPGVTLTNLHKNSGIDQQAYQNFLERSKETHALGRVGNPEEVAKAIAFLASDDA 236
VRVNS+ PG+ T+L + ++ L R G E+VA FL SD A
Sbjct: 187 VRVNSIRPGLIRTDLVAAITESAELSSDYAMC----TPLPRQGEVEDVANMAMFLLSDAA 242
Query: 237 SFTTGEHLTVDGGRHA 252
SF TG+ + VDGG+
Sbjct: 243 SFVTGQVINVDGGQML 258
>4e4y_A Short chain dehydrogenase family protein; structural genomics, the
center for structural genomics of I diseases, csgid,
niaid; 1.80A {Francisella tularensis subsp}
Length = 244
Score = 264 bits (677), Expect = 1e-89
Identities = 73/256 (28%), Positives = 117/256 (45%), Gaps = 18/256 (7%)
Query: 2 NFTGKVILVTGASSGIGAATALHLAKLDAKLAITGRNVEQLDKVSESCQSVSKNKPLVIQ 61
+ LVTG S GIG A L + I + E+ + I+
Sbjct: 1 SNAMANYLVTGGSKGIGKAVVELLLQNKNHTVINIDIQQSFSA--ENLK--------FIK 50
Query: 62 ADLTSEEDTKRIIDTVVKHYQKLNVLVNNAGILEAGSIENTSLEQYDKIMNVNVRSIYHL 121
ADLT ++D ++D + + + NAGIL GSI + +E K++++NV S +
Sbjct: 51 ADLTKQQDITNVLDIIK--NVSFDGIFLNAGILIKGSIFDIDIESIKKVLDLNVWSSIYF 108
Query: 122 TMLAVPHLISTKGNIVNVSSVNGLRSFPGVLAYCVSKAAVDQFTSCTALELASKGVRVNS 181
+L +IV S + P AY +SK A+ Q T AL+LA +RVN+
Sbjct: 109 IKGLENNL-KVGASIVFNGSDQCFIAKPNSFAYTLSKGAIAQMTKSLALDLAKYQIRVNT 167
Query: 182 VNPGVTLTNL-----HKNSGIDQQAYQNFLERSKETHALGRVGNPEEVAKAIAFLASDDA 236
V PG T+L K + ++ ++ ++ L R+ P+E+A+ + FL SD +
Sbjct: 168 VCPGTVDTDLYRNLIQKYANNVGISFDEAQKQEEKEFPLNRIAQPQEIAELVIFLLSDKS 227
Query: 237 SFTTGEHLTVDGGRHA 252
F TG + +DGG A
Sbjct: 228 KFMTGGLIPIDGGYTA 243
>1hxh_A 3BETA/17BETA-hydroxysteroid dehydrogenase; alpha-beta, rossmann
fold, short-chain dehydrogenase, oxidoreductase; 1.22A
{Comamonas testosteroni} SCOP: c.2.1.2
Length = 253
Score = 264 bits (678), Expect = 1e-89
Identities = 75/253 (29%), Positives = 124/253 (49%), Gaps = 7/253 (2%)
Query: 3 FTGKVILVTGASSGIGAATALHLAKLDAKLAITGRNVEQLDKVSESCQSVSKNKPLVIQA 62
GKV LVTG +SG+G L AK+A + N +++ + + ++
Sbjct: 4 LQGKVALVTGGASGVGLEVVKLLLGEGAKVAFSDINEAAGQQLAAEL----GERSMFVRH 59
Query: 63 DLTSEEDTKRIIDTVVKHYQKLNVLVNNAGILEAGSIENTSLEQYDKIMNVNVRSIYHLT 122
D++SE D ++ V + LNVLVNNAGIL G +E LE + +++ +N S++
Sbjct: 60 DVSSEADWTLVMAAVQRRLGTLNVLVNNAGILLPGDMETGRLEDFSRLLKINTESVFIGC 119
Query: 123 MLAVPHLISTKGNIVNVSSVNGLRSFPGVLAYCVSKAAVDQFTSCTALELASKG--VRVN 180
+ + T G+I+N++SV+ Y SKAAV T AL +G +RVN
Sbjct: 120 QQGIAAMKETGGSIINMASVSSWLPIEQYAGYSASKAAVSALTRAAALSCRKQGYAIRVN 179
Query: 181 SVNPGVTLTNLHKNSGIDQQAYQNFLERSKETHALGRVGNPEEVAKAIAFLASDDASFTT 240
S++P T + + S + + + + + + GR PE +A+ + FLASD++S +
Sbjct: 180 SIHPDGIYTPMMQAS-LPKGVSKEMVLHDPKLNRAGRAYMPERIAQLVLFLASDESSVMS 238
Query: 241 GEHLTVDGGRHAM 253
G L D M
Sbjct: 239 GSELHADNSILGM 251
>4eso_A Putative oxidoreductase; NADP, structural genomics, PSI-biology,
NEW structural genomics research consortium, nysgrc;
HET: MSE NAP; 1.91A {Sinorhizobium meliloti} PDB: 3vc7_A
Length = 255
Score = 264 bits (677), Expect = 2e-89
Identities = 77/250 (30%), Positives = 119/250 (47%), Gaps = 7/250 (2%)
Query: 1 MN-FTGKVILVTGASSGIGAATALHLAKLDAKLAITGRNVEQLDKVSESCQSVSKNKPLV 59
M + GK +V G + G+G AT L + A++ +TGRN + ++ E +
Sbjct: 3 MGNYQGKKAIVIGGTHGMGLATVRRLVEGGAEVLLTGRNESNIARIREEFGP----RVHA 58
Query: 60 IQADLTSEEDTKRIIDTVVKHYQKLNVLVNNAGILEAGSIENTSLEQYDKIMNVNVRSIY 119
+++D+ + + + +++L NAG+ E + S YD+ VN + +
Sbjct: 59 LRSDIADLNEIAVLGAAAGQTLGAIDLLHINAGVSELEPFDQVSEASYDRQFAVNTKGAF 118
Query: 120 HLTMLAVPHLISTKGNIVNVSSVNGLRSFPGVLAYCVSKAAVDQFTSCTALELASKGVRV 179
P + G+IV SSV PG+ Y SKAA+ F S A EL +G+RV
Sbjct: 119 FTVQRLTPLI-REGGSIVFTSSVADEGGHPGMSVYSASKAALVSFASVLAAELLPRGIRV 177
Query: 180 NSVNPGVTLTNLHKNSGIDQQAYQNFLERSKETHALGRVGNPEEVAKAIAFLASDDASFT 239
NSV+PG T +GI + F + R G +EVA+A+ FLA +A+FT
Sbjct: 178 NSVSPGFIDTPTKGVAGITEAERAEFKTLGDNITPMKRNGTADEVARAVLFLAF-EATFT 236
Query: 240 TGEHLTVDGG 249
TG L VDGG
Sbjct: 237 TGAKLAVDGG 246
>2dtx_A Glucose 1-dehydrogenase related protein; rossmann fold,
oxidoreductase; HET: BMA; 1.60A {Thermoplasma
acidophilum} PDB: 2dtd_A* 2dte_A* 2zk7_A
Length = 264
Score = 261 bits (669), Expect = 3e-88
Identities = 89/260 (34%), Positives = 129/260 (49%), Gaps = 19/260 (7%)
Query: 2 NFTGKVILVTGASSGIGAATALHLAKLDAKLAITGRNVEQLDKVSESCQSVSKNKPLVIQ 61
+ KV++VTGAS GIG A A +K+ + K I+
Sbjct: 5 DLRDKVVIVTGASMGIGRAIAERFVDEGSKVIDLSIHDPGEAKYDH------------IE 52
Query: 62 ADLTSEEDTKRIIDTVVKHYQKLNVLVNNAGILEAGSIENTSLEQYDKIMNVNVRSIYHL 121
D+T+ + K ID + K Y ++VLVNNAGI G IE+ S+ ++ +I++VN+ Y+
Sbjct: 53 CDVTNPDQVKASIDHIFKEYGSISVLVNNAGIESYGKIESMSMGEWRRIIDVNLFGYYYA 112
Query: 122 TMLAVPHLISTK-GNIVNVSSVNGLRSFPGVLAYCVSKAAVDQFTSCTALELASKGVRVN 180
+ A+P++I ++ +IVN+SSV AY SK AV T AL+ A +R N
Sbjct: 113 SKFAIPYMIRSRDPSIVNISSVQASIITKNASAYVTSKHAVIGLTKSIALDYA-PLLRCN 171
Query: 181 SVNPGVTLTNL-----HKNSGIDQQAYQNFLERSKETHALGRVGNPEEVAKAIAFLASDD 235
+V P T L G D + + H + R+G P+EVA A+AFLAS +
Sbjct: 172 AVCPATIDTPLVRKAAELEVGSDPMRIEKKISEWGHEHPMQRIGKPQEVASAVAFLASRE 231
Query: 236 ASFTTGEHLTVDGGRHAMCP 255
ASF TG L VDGG P
Sbjct: 232 ASFITGTCLYVDGGLSIRAP 251
>3tzq_B Short-chain type dehydrogenase/reductase; ssgcid, structural
genomics, seattle structural genomics CEN infectious
disease, oxidoreductase; 2.50A {Mycobacterium marinum}
Length = 271
Score = 261 bits (670), Expect = 4e-88
Identities = 74/258 (28%), Positives = 121/258 (46%), Gaps = 12/258 (4%)
Query: 1 MNFTGKVILVTGASSGIGAATALHLAKLDAKLAITGRNVEQLDKVSESCQSVSKNKPLVI 60
KV ++TGA GIG T+ LA+ A++ + L + S +
Sbjct: 7 AELENKVAIITGACGGIGLETSRVLARAGARVVLADLPETDLAGAAASVGR----GAVHH 62
Query: 61 QADLTSEEDTKRIIDTVVKHYQKLNVLVNNAGILEAGS--IENTSLEQYDKIMNVNVRSI 118
DLT+E + +ID + + +L+++ NNA + + +++ +D VN R
Sbjct: 63 VVDLTNEVSVRALIDFTIDTFGRLDIVDNNAAHSDPADMLVTQMTVDVWDDTFTVNARGT 122
Query: 119 YHLTMLAVPHLISTK-GNIVNVSSVNGLRSFPGVLAYCVSKAAVDQFTSCTALELASKGV 177
+ A+P LIS G IVN+SS ++ AY +KAA++ T A + GV
Sbjct: 123 MLMCKYAIPRLISAGGGAIVNISSATAHAAYDMSTAYACTKAAIETLTRYVATQYGRHGV 182
Query: 178 RVNSVNPGVTLTNLHKNSGIDQQAYQNFLERSKETHALGRVGNPEEVAKAIAFLASDDAS 237
R N++ PG+ T ++ Q ++ H GR+G P E+A+ + FLASD A+
Sbjct: 183 RCNAIAPGLVRTPR-----LEVGLPQPIVDIFATHHLAGRIGEPHEIAELVCFLASDRAA 237
Query: 238 FTTGEHLTVDGGRHAMCP 255
F TG+ + D G A P
Sbjct: 238 FITGQVIAADSGLLAHLP 255
>1iy8_A Levodione reductase; oxidoreductase; HET: NAD; 1.60A {Leifsonia
aquatica} SCOP: c.2.1.2
Length = 267
Score = 261 bits (669), Expect = 4e-88
Identities = 71/255 (27%), Positives = 130/255 (50%), Gaps = 5/255 (1%)
Query: 3 FTGKVILVTGASSGIGAATALHLAKLDAKLAITGRNVEQLDKVSESCQSVSKN-KPLVIQ 61
FT +V+L+TG SG+G ATA+ LA AKL++ + E L+ + + + + L
Sbjct: 11 FTDRVVLITGGGSGLGRATAVRLAAEGAKLSLVDVSSEGLEASKAAVLETAPDAEVLTTV 70
Query: 62 ADLTSEEDTKRIIDTVVKHYQKLNVLVNNAGIL-EAGSIENTSLEQYDKIMNVNVRSIYH 120
AD++ E + + + + +++ NNAGI + E+ + ++DK++++N+R ++
Sbjct: 71 ADVSDEAQVEAYVTATTERFGRIDGFFNNAGIEGKQNPTESFTAAEFDKVVSINLRGVFL 130
Query: 121 LTMLAVPHLISTK-GNIVNVSSVNGLRSFPGVLAYCVSKAAVDQFTSCTALELASKGVRV 179
+ + G +VN +SV G+R Y +K V T +A+E G+R+
Sbjct: 131 GLEKVLKIMREQGSGMVVNTASVGGIRGIGNQSGYAAAKHGVVGLTRNSAVEYGRYGIRI 190
Query: 180 NSVNPGVTLTNLHKN--SGIDQQAYQNFLERSKETHALGRVGNPEEVAKAIAFLASDDAS 237
N++ PG T + +N +D + + E + + R G E+A +AFL SDDAS
Sbjct: 191 NAIAPGAIWTPMVENSMKQLDPENPRKAAEEFIQVNPSKRYGEAPEIAAVVAFLLSDDAS 250
Query: 238 FTTGEHLTVDGGRHA 252
+ + +DGG+ A
Sbjct: 251 YVNATVVPIDGGQSA 265
>1ae1_A Tropinone reductase-I; oxidoreductase, tropane alkaloid
biosynthesis, reduction of tropinone to tropine,
short-chain dehydrogenase; HET: NAP; 2.40A {Datura
stramonium} SCOP: c.2.1.2
Length = 273
Score = 261 bits (669), Expect = 5e-88
Identities = 88/253 (34%), Positives = 133/253 (52%), Gaps = 3/253 (1%)
Query: 2 NFTGKVILVTGASSGIGAATALHLAKLDAKLAITGRNVEQLDKVSESCQSVSKNKPLVIQ 61
+ G LVTG S GIG A LA L A++ RN ++LD+ E +
Sbjct: 18 SLKGTTALVTGGSKGIGYAIVEELAGLGARVYTCSRNEKELDECLEIWRE-KGLNVEGSV 76
Query: 62 ADLTSEEDTKRIIDTVVKHYQ-KLNVLVNNAGILEAGSIENTSLEQYDKIMNVNVRSIYH 120
DL S + +++ TV + KLN+LVNNAG++ ++ + + Y+ IM N + YH
Sbjct: 77 CDLLSRTERDKLMQTVAHVFDGKLNILVNNAGVVIHKEAKDFTEKDYNIIMGTNFEAAYH 136
Query: 121 LTMLAVPHLISTK-GNIVNVSSVNGLRSFPGVLAYCVSKAAVDQFTSCTALELASKGVRV 179
L+ +A P L +++ GN++ +SS+ G + P V Y SK A++Q T A E A +RV
Sbjct: 137 LSQIAYPLLKASQNGNVIFLSSIAGFSALPSVSLYSASKGAINQMTKSLACEWAKDNIRV 196
Query: 180 NSVNPGVTLTNLHKNSGIDQQAYQNFLERSKETHALGRVGNPEEVAKAIAFLASDDASFT 239
NSV PGV LT L + + + ++ +GR G P+EV+ IAFL AS+
Sbjct: 197 NSVAPGVILTPLVETAIKKNPHQKEEIDNFIVKTPMGRAGKPQEVSALIAFLCFPAASYI 256
Query: 240 TGEHLTVDGGRHA 252
TG+ + DGG A
Sbjct: 257 TGQIIWADGGFTA 269
>4egf_A L-xylulose reductase; structural genomics, ssgcid, seattle
structural genomics CEN infectious disease,
oxidoreductase; 2.30A {Mycobacterium smegmatis}
Length = 266
Score = 259 bits (665), Expect = 2e-87
Identities = 81/254 (31%), Positives = 118/254 (46%), Gaps = 6/254 (2%)
Query: 1 MNFTGKVILVTGASSGIGAATALHLAKLDAKLAITGRNVEQLDKVSESCQSVSKNKPLVI 60
+ GK L+TGA+ GIGA A A A+L ++GR+V +LD + +
Sbjct: 16 LRLDGKRALITGATKGIGADIARAFAAAGARLVLSGRDVSELDAARRALGEQFGTDVHTV 75
Query: 61 QADLTSEEDTKRIIDTVVKHYQKLNVLVNNAGILEAGSIENTSLEQYDKIMNVNVRSIYH 120
DL + + + + L+VLVNNAGI + +T + +D + VN+R+
Sbjct: 76 AIDLAEPDAPAELARRAAEAFGGLDVLVNNAGISHPQPVVDTDPQLFDATIAVNLRAPAL 135
Query: 121 LTMLAVPHLISTK--GNIVNVSSVNGLRSFPGVLAYCVSKAAVDQFTSCTALELASKGVR 178
L +++ G I+ V+S L P AYC SKA + T A EL G+R
Sbjct: 136 LASAVGKAMVAAGEGGAIITVASAAALAPLPDHYAYCTSKAGLVMATKVLARELGPHGIR 195
Query: 179 VNSVNPGVTLTNLHKNSGIDQQAYQNFLERSKETHALGRVGNPEEVAKAIAFLASDDASF 238
NSV P V LT + + D+ + R LGR P EV+ A+ +LASD AS
Sbjct: 196 ANSVCPTVVLTEMGQRVWGDEAKSAPMIAR----IPLGRFAVPHEVSDAVVWLASDAASM 251
Query: 239 TTGEHLTVDGGRHA 252
G + VDGG
Sbjct: 252 INGVDIPVDGGYTM 265
>2zat_A Dehydrogenase/reductase SDR family member 4; alpha/beta,
oxidoreductase; HET: NAP; 1.50A {Sus scrofa} PDB:
3o4r_A*
Length = 260
Score = 259 bits (664), Expect = 2e-87
Identities = 81/253 (32%), Positives = 133/253 (52%), Gaps = 7/253 (2%)
Query: 2 NFTGKVILVTGASSGIGAATALHLAKLDAKLAITGRNVEQLDKVSESCQSVSKNKPLVIQ 61
KV LVT ++ GIG A A LA+ A + ++ R E +D+ + Q
Sbjct: 11 PLENKVALVTASTDGIGLAIARRLAQDGAHVVVSSRKQENVDRTVATLQG-EGLSVTGTV 69
Query: 62 ADLTSEEDTKRIIDTVVKHYQKLNVLVNNAGI-LEAGSIENTSLEQYDKIMNVNVRSIYH 120
+ ED +R++ V + +++LV+NA + G+I + + E +DKI++VNV++
Sbjct: 70 CHVGKAEDRERLVAMAVNLHGGVDILVSNAAVNPFFGNIIDATEEVWDKILHVNVKATVL 129
Query: 121 LTMLAVPHLISTK-GNIVNVSSVNGLRSFPGVLAYCVSKAAVDQFTSCTALELASKGVRV 179
+T VP + G+++ VSSV FP + Y VSK A+ T A+ELA + +RV
Sbjct: 130 MTKAVVPEMEKRGGGSVLIVSSVGAYHPFPNLGPYNVSKTALLGLTKNLAVELAPRNIRV 189
Query: 180 NSVNPGVTLTNLHKNSGIDQQAYQNFLERSKETHALGRVGNPEEVAKAIAFLASDDASFT 239
N + PG+ TN + +D+ + E + R+GNPE+ A ++FL S+DAS+
Sbjct: 190 NCLAPGLIKTNFSQVLWMDKARKEYMKES----LRIRRLGNPEDCAGIVSFLCSEDASYI 245
Query: 240 TGEHLTVDGGRHA 252
TGE + V GG +
Sbjct: 246 TGETVVVGGGTAS 258
>4fn4_A Short chain dehydrogenase; NADH-binding, rossmann fold,
oxidoreductase; HET: NAD; 1.75A {Sulfolobus
acidocaldarius}
Length = 254
Score = 259 bits (664), Expect = 2e-87
Identities = 72/255 (28%), Positives = 130/255 (50%), Gaps = 5/255 (1%)
Query: 1 MNFTGKVILVTGASSGIGAATALHLAKLDAKLAITGRNVEQLDKVSESCQSVSKNKPLVI 60
+ KV++VTGA SGIG A A A D+ + ++L+++ + + + L +
Sbjct: 3 QSLKNKVVIVTGAGSGIGRAIAKKFALNDSIVVAVELLEDRLNQIVQELRG-MGKEVLGV 61
Query: 61 QADLTSEEDTKRIIDTVVKHYQKLNVLVNNAGIL-EAGSIENTSLEQYDKIMNVNVRSIY 119
+AD++ ++D + + + Y +++VL NNAGI+ + S E +++++ VN+ S +
Sbjct: 62 KADVSKKKDVEEFVRRTFETYSRIDVLCNNAGIMDGVTPVAEVSDELWERVLAVNLYSAF 121
Query: 120 HLTMLAVPHLISTK-GNIVNVSSVNGLRSFPGVLAYCVSKAAVDQFTSCTALELASKGVR 178
+ + +P ++ G IVN +S+ G+R Y V+K + T A +G+R
Sbjct: 122 YSSRAVIPIMLKQGKGVIVNTASIAGIRGGFAGAPYTVAKHGLIGLTRSIAAHYGDQGIR 181
Query: 179 VNSVNPGVTLTNLHKNSGIDQQAYQNFLERSKETHALGRVGNPEEVAKAIAFLASDDASF 238
+V PG TN+ G + + +K R+ PE++A I FLASD+ASF
Sbjct: 182 AVAVLPGTVKTNI--GLGSSKPSELGMRTLTKLMSLSSRLAEPEDIANVIVFLASDEASF 239
Query: 239 TTGEHLTVDGGRHAM 253
G+ + VDGG +
Sbjct: 240 VNGDAVVVDGGLTVL 254
>3d3w_A L-xylulose reductase; uronate cycle, short-chain
dehydrogenase/reductase(SDR) superfamily, glucose
metabolism, acetylation, carbohydrate metabolism; HET:
NAP; 1.87A {Homo sapiens} PDB: 1wnt_A* 1pr9_A*
Length = 244
Score = 258 bits (661), Expect = 3e-87
Identities = 79/251 (31%), Positives = 117/251 (46%), Gaps = 15/251 (5%)
Query: 1 MNFTGKVILVTGASSGIGAATALHLAKLDAKLAITGRNVEQLDKVSESCQSVSKNKPLVI 60
+ G+ +LVTGA GIG T L A++ R LD + C + +
Sbjct: 3 LFLAGRRVLVTGAGKGIGRGTVQALHATGARVVAVSRTQADLDSLVRECPGI-----EPV 57
Query: 61 QADLTSEEDTKRIIDTVVKHYQKLNVLVNNAGILEAGSIENTSLEQYDKIMNVNVRSIYH 120
DL E T+R + +++LVNNA + + E +D+ VN+R++
Sbjct: 58 CVDLGDWEATERALG----SVGPVDLLVNNAAVALLQPFLEVTKEAFDRSFEVNLRAVIQ 113
Query: 121 LTMLAVPHLIS--TKGNIVNVSSVNGLRSFPGVLAYCVSKAAVDQFTSCTALELASKGVR 178
++ + LI+ G IVNVSS R+ YC +K A+D T ALEL +R
Sbjct: 114 VSQIVARGLIARGVPGAIVNVSSQCSQRAVTNHSVYCSTKGALDMLTKVMALELGPHKIR 173
Query: 179 VNSVNPGVTLTNLHKNSGIDQQAYQNFLERSKETHALGRVGNPEEVAKAIAFLASDDASF 238
VN+VNP V +T++ + + D + L R LG+ E V AI FL SD +
Sbjct: 174 VNAVNPTVVMTSMGQATWSDPHKAKTMLNR----IPLGKFAEVEHVVNAILFLLSDRSGM 229
Query: 239 TTGEHLTVDGG 249
TTG L V+GG
Sbjct: 230 TTGSTLPVEGG 240
>1cyd_A Carbonyl reductase; short-chain dehydrogenase, oxidoreductase; HET:
NAP; 1.80A {Mus musculus} SCOP: c.2.1.2
Length = 244
Score = 258 bits (661), Expect = 3e-87
Identities = 78/254 (30%), Positives = 127/254 (50%), Gaps = 15/254 (5%)
Query: 1 MNFTGKVILVTGASSGIGAATALHLAKLDAKLAITGRNVEQLDKVSESCQSVSKNKPLVI 60
+NF+G LVTGA GIG T L AK+ R L +++ C + +
Sbjct: 3 LNFSGLRALVTGAGKGIGRDTVKALHASGAKVVAVTRTNSDLVSLAKECPGI-----EPV 57
Query: 61 QADLTSEEDTKRIIDTVVKHYQKLNVLVNNAGILEAGSIENTSLEQYDKIMNVNVRSIYH 120
DL + T++ + +++LVNNA ++ + E +D+ +VN+RS++
Sbjct: 58 CVDLGDWDATEKALG----GIGPVDLLVNNAALVIMQPFLEVTKEAFDRSFSVNLRSVFQ 113
Query: 121 LTMLAVPHLIS--TKGNIVNVSSVNGLRSFPGVLAYCVSKAAVDQFTSCTALELASKGVR 178
++ + +I+ G+IVNVSS+ +FP ++ Y +K A+ T A+EL +R
Sbjct: 114 VSQMVARDMINRGVPGSIVNVSSMVAHVTFPNLITYSSTKGAMTMLTKAMAMELGPHKIR 173
Query: 179 VNSVNPGVTLTNLHKNSGIDQQAYQNFLERSKETHALGRVGNPEEVAKAIAFLASDDASF 238
VNSVNP V LT++ K D + + ER H L + E+V +I FL SD ++
Sbjct: 174 VNSVNPTVVLTDMGKKVSADPEFARKLKER----HPLRKFAEVEDVVNSILFLLSDRSAS 229
Query: 239 TTGEHLTVDGGRHA 252
T+G + VD G A
Sbjct: 230 TSGGGILVDAGYLA 243
>2ae2_A Protein (tropinone reductase-II); oxidoreductase, tropane alkaloid
biosynthesis, reduction of tropinone to pseudotropine;
HET: NAP PTO; 1.90A {Datura stramonium} SCOP: c.2.1.2
PDB: 2ae1_A* 1ipe_A* 1ipf_A*
Length = 260
Score = 258 bits (661), Expect = 6e-87
Identities = 96/255 (37%), Positives = 141/255 (55%), Gaps = 4/255 (1%)
Query: 2 NFTGKVILVTGASSGIGAATALHLAKLDAKLAITGRNVEQLDKVSESCQSVSKNKPLVIQ 61
N G LVTG S GIG LA L A + RN ++L+ +S K
Sbjct: 6 NLEGCTALVTGGSRGIGYGIVEELASLGASVYTCSRNQKELNDCLTQWRS-KGFKVEASV 64
Query: 62 ADLTSEEDTKRIIDTVVKHYQ-KLNVLVNNAGILEAGSIENTSLEQYDKIMNVNVRSIYH 120
DL+S + + +++TV H+ KLN+LVNNAGI+ ++ ++E Y IM++N + YH
Sbjct: 65 CDLSSRSERQELMNTVANHFHGKLNILVNNAGIVIYKEAKDYTVEDYSLIMSINFEAAYH 124
Query: 121 LTMLAVPHLISTK-GNIVNVSSVNGLRSFPGVLAYCVSKAAVDQFTSCTALELASKGVRV 179
L++LA P L +++ GN+V +SSV+G + P Y +K A+DQ T C A E A +RV
Sbjct: 125 LSVLAHPFLKASERGNVVFISSVSGALAVPYEAVYGATKGAMDQLTRCLAFEWAKDNIRV 184
Query: 180 NSVNPGVTLTNLHKNSGIDQQAYQNFLERSKETHALGRVGNPEEVAKAIAFLASDDASFT 239
N V PGV T+L + I + L + + AL R+G P+E+A +AFL AS+
Sbjct: 185 NGVGPGVIATSLVE-MTIQDPEQKENLNKLIDRCALRRMGEPKELAAMVAFLCFPAASYV 243
Query: 240 TGEHLTVDGGRHAMC 254
TG+ + VDGG A C
Sbjct: 244 TGQIIYVDGGLMANC 258
>1zk4_A R-specific alcohol dehydrogenase; short chain
reductases/dehydrogenases, magnesium dependence,
oxidoreductase; HET: NAP; 1.00A {Lactobacillus brevis}
SCOP: c.2.1.2 PDB: 1nxq_A* 1zjy_A* 1zjz_A* 1zk0_A*
1zk1_A* 1zk2_A 1zk3_A
Length = 251
Score = 257 bits (660), Expect = 7e-87
Identities = 78/251 (31%), Positives = 131/251 (52%), Gaps = 11/251 (4%)
Query: 3 FTGKVILVTGASSGIGAATALHLAKLDAKLAITGRNVEQLDKVSESCQSVSKNKPLVIQA 62
GKV ++TG + GIG A A + AK+ ITGR+ + +K ++S + ++ Q
Sbjct: 4 LDGKVAIITGGTLGIGLAIATKFVEEGAKVMITGRHSDVGEKAAKSVGT--PDQIQFFQH 61
Query: 63 DLTSEEDTKRIIDTVVKHYQKLNVLVNNAGILEAGSIENTSLEQYDKIMNVNVRSIYHLT 122
D + E+ ++ D K + ++ LVNNAGI S+E T+ ++ K++ VN+ ++ T
Sbjct: 62 DSSDEDGWTKLFDATEKAFGPVSTLVNNAGIAVNKSVEETTTAEWRKLLAVNLDGVFFGT 121
Query: 123 MLAVPHLISTK--GNIVNVSSVNGLRSFPGVLAYCVSKAAVDQFTSCTALELASK--GVR 178
L + + + +I+N+SS+ G P + AY SK AV + AL+ A K VR
Sbjct: 122 RLGIQRMKNKGLGASIINMSSIEGFVGDPSLGAYNASKGAVRIMSKSAALDCALKDYDVR 181
Query: 179 VNSVNPGVTLTNLHKNSGIDQQAYQNFLERSKETHALGRVGNPEEVAKAIAFLASDDASF 238
VN+V+PG T L + ++A + +G +G P ++A +LAS+++ F
Sbjct: 182 VNTVHPGYIKTPLVDDLPGAEEA-----MSQRTKTPMGHIGEPNDIAYICVYLASNESKF 236
Query: 239 TTGEHLTVDGG 249
TG VDGG
Sbjct: 237 ATGSEFVVDGG 247
>1xu9_A Corticosteroid 11-beta-dehydrogenase, isozyme 1; hydroxysteroid,
SDR, oxidoreductase; HET: NDP CPS MES; 1.55A {Homo
sapiens} SCOP: c.2.1.2 PDB: 1xu7_A* 3bzu_A* 3czr_A*
3d3e_A* 3d4n_A* 3fco_A* 3frj_A* 3h6k_A* 3hfg_A* 3oq1_A*
3qqp_A* 3pdj_A* 3d5q_A* 2rbe_A* 3byz_A* 3ey4_A* 3tfq_A*
3ch6_A* 2irw_A* 2ilt_A* ...
Length = 286
Score = 258 bits (662), Expect = 7e-87
Identities = 65/229 (28%), Positives = 96/229 (41%), Gaps = 16/229 (6%)
Query: 2 NFTGKVILVTGASSGIGAATALHLAKLDAKLAITGRNVEQLDKVSESCQSVSKNKPLVIQ 61
GK ++VTGAS GIG A HLAK+ A + +T R+ E L KV C + I
Sbjct: 25 MLQGKKVIVTGASKGIGREMAYHLAKMGAHVVVTARSKETLQKVVSHCLELGAASAHYIA 84
Query: 62 ADLTSEEDTKRIIDTVVKHYQKLNVLVNNAGILEAGSIENTSLEQYDKIMNVNVRSIYHL 121
+ ++ + K L++L+ N + ++ + + K M VN S L
Sbjct: 85 GTMEDMTFAEQFVAQAGKLMGGLDMLILNHITNTSLNLFHDDIHHVRKSMEVNFLSYVVL 144
Query: 122 TMLAVPHLISTKGNIVNVSSVNGLRSFPGVLAYCVSKAAVDQFTSCTALELASKG--VRV 179
T+ A+P L + G+IV VSS+ G ++P V AY SK A+D F S E + V +
Sbjct: 145 TVAALPMLKQSNGSIVVVSSLAGKVAYPMVAAYSASKFALDGFFSSIRKEYSVSRVNVSI 204
Query: 180 NSVNPGVTLTNLHKNSGIDQQAYQNFLERSKETHALGRVGNPEEVAKAI 228
G+ T + S H EE A I
Sbjct: 205 TLCVLGLIDTETAMKA------------VSGIVHMQAA--PKEECALEI 239
>1gee_A Glucose 1-dehydrogenase; short-chain dehydrogenase/reductase,
oxidoreductase; HET: NAD; 1.60A {Bacillus megaterium}
SCOP: c.2.1.2 PDB: 1rwb_A* 1gco_A* 1g6k_A* 3aus_A
3aut_A* 3auu_A*
Length = 261
Score = 257 bits (658), Expect = 1e-86
Identities = 76/252 (30%), Positives = 136/252 (53%), Gaps = 8/252 (3%)
Query: 1 MNFTGKVILVTGASSGIGAATALHLAKLDAKLAITGR-NVEQLDKVSESCQSVSKNKPLV 59
+ GKV+++TG+S+G+G + A+ A AK+ + R ++ + V E + V + +
Sbjct: 3 KDLEGKVVVITGSSTGLGKSMAIRFATEKAKVVVNYRSKEDEANSVLEEIKKVG-GEAIA 61
Query: 60 IQADLTSEEDTKRIIDTVVKHYQKLNVLVNNAGILEAGSIENTSLEQYDKIMNVNVRSIY 119
++ D+T E D ++ + +K + KL+V++NNAG+ S SL ++K+++ N+ +
Sbjct: 62 VKGDVTVESDVINLVQSAIKEFGKLDVMINNAGLENPVSSHEMSLSDWNKVIDTNLTGAF 121
Query: 120 HLTMLAVPHLIS--TKGNIVNVSSVNGLRSFPGVLAYCVSKAAVDQFTSCTALELASKGV 177
+ A+ + + KG ++N+SSV+ +P + Y SK + T ALE A KG+
Sbjct: 122 LGSREAIKYFVENDIKGTVINMSSVHEKIPWPLFVHYAASKGGMKLMTETLALEYAPKGI 181
Query: 178 RVNSVNPGVTLTNLHKNSGIDQQAYQNFLERSKETHALGRVGNPEEVAKAIAFLASDDAS 237
RVN++ PG T ++ D + + +G +G PEE+A A+LAS +AS
Sbjct: 182 RVNNIGPGAINTPINAEKFADPEQRADVESM----IPMGYIGEPEEIAAVAAWLASSEAS 237
Query: 238 FTTGEHLTVDGG 249
+ TG L DGG
Sbjct: 238 YVTGITLFADGG 249
>3gvc_A Oxidoreductase, probable short-chain type dehydrogenase/reductase;
ssgcid, decode, niaid, UWPPG, SBRI, structural genomics;
2.45A {Mycobacterium tuberculosis}
Length = 277
Score = 257 bits (660), Expect = 2e-86
Identities = 80/252 (31%), Positives = 123/252 (48%), Gaps = 6/252 (2%)
Query: 3 FTGKVILVTGASSGIGAATALHLAKLDAKLAITGRNVEQLDKVSESCQSVSKNKPLVIQA 62
GKV +VTGA +GIG A A LA + + + D + +
Sbjct: 27 LAGKVAIVTGAGAGIGLAVARRLADEGCHVLCADIDGDAADAAATKI----GCGAAACRV 82
Query: 63 DLTSEEDTKRIIDTVVKHYQKLNVLVNNAGILEAGSIENTSLEQYDKIMNVNVRSIYHLT 122
D++ E+ ++D V + ++ LV NAG++ S+ +T++E +D+++ +N+R + T
Sbjct: 83 DVSDEQQIIAMVDACVAAFGGVDKLVANAGVVHLASLIDTTVEDFDRVIAINLRGAWLCT 142
Query: 123 MLAVPHLISTK-GNIVNVSSVNGLRSFPGVLAYCVSKAAVDQFTSCTALELASKGVRVNS 181
A P +I G IVN+SS+ G + G AY +SKA + Q + TA EL S G+R N+
Sbjct: 143 KHAAPRMIERGGGAIVNLSSLAGQVAVGGTGAYGMSKAGIIQLSRITAAELRSSGIRSNT 202
Query: 182 VNPGVTLTNL-HKNSGIDQQAYQNFLERSKETHALGRVGNPEEVAKAIAFLASDDASFTT 240
+ P T + + A RS GR+ PEE+A + FL SDDAS T
Sbjct: 203 LLPAFVDTPMQQTAMAMFDGALGAGGARSMIARLQGRMAAPEEMAGIVVFLLSDDASMIT 262
Query: 241 GEHLTVDGGRHA 252
G DGG A
Sbjct: 263 GTTQIADGGTIA 274
>3v8b_A Putative dehydrogenase, possibly 3-oxoacyl-[acyl- protein]
reductase; PSI-biology, structural genomics, protein
structure initiati nysgrc; 2.70A {Sinorhizobium
meliloti}
Length = 283
Score = 256 bits (657), Expect = 4e-86
Identities = 85/260 (32%), Positives = 134/260 (51%), Gaps = 8/260 (3%)
Query: 1 MNFTGKVILVTGASSGIGAATALHLAKLDAKLAITGRNVEQLDKVSESCQSVSKNKPLVI 60
MN V L+TGA SGIG ATAL LA + GR ++++V++ + + + +
Sbjct: 24 MNQPSPVALITGAGSGIGRATALALAADGVTVGALGRTRTEVEEVADEIVG-AGGQAIAL 82
Query: 61 QADLTSEEDTKRIIDTVVKHYQKLNVLVNNAGIL-EAGSIENTSLEQYDKIMNVNVRSIY 119
+AD++ E + + +V + L+++V NAGI I++ ++D+ + VN+R +
Sbjct: 83 EADVSDELQMRNAVRDLVLKFGHLDIVVANAGINGVWAPIDDLKPFEWDETIAVNLRGTF 142
Query: 120 HLTMLAVPHLISTK-GNIVNVSSVNGLRSF--PGVLAYCVSKAAVDQFTSCTALELASKG 176
L VP+L G IV VSS+NG R+F PG AY +KAA ALEL
Sbjct: 143 LTLHLTVPYLKQRGGGAIVVVSSINGTRTFTTPGATAYTATKAAQVAIVQQLALELGKHH 202
Query: 177 VRVNSVNPGVTLTNL---HKNSGIDQQAYQNFLERSKETHALGRVGNPEEVAKAIAFLAS 233
+RVN+V PG TN+ K ++ A + + G+ G E+VA+ I FL S
Sbjct: 203 IRVNAVCPGAIETNISDNTKLRHEEETAIPVEWPKGQVPITDGQPGRSEDVAELIRFLVS 262
Query: 234 DDASFTTGEHLTVDGGRHAM 253
+ A TG + +DGG+ +
Sbjct: 263 ERARHVTGSPVWIDGGQGLL 282
>3tox_A Short chain dehydrogenase; structural genomics, PSI-biology, NEW
YORK structural genomi research consortium, nysgrc,
oxidoreductase; HET: NAP; 1.93A {Sinorhizobium meliloti}
Length = 280
Score = 256 bits (657), Expect = 5e-86
Identities = 82/253 (32%), Positives = 127/253 (50%), Gaps = 6/253 (2%)
Query: 3 FTGKVILVTGASSGIGAATALHLAKLDAKLAITGRNVEQLDKVSESCQSVSKNKPLVIQA 62
GK+ +VTGASSGIG A AL A+ AK+ +T RN L ++++ + +
Sbjct: 6 LEGKIAIVTGASSGIGRAAALLFAREGAKVVVTARNGNALAELTDEIAG-GGGEAAALAG 64
Query: 63 DLTSEEDTKRIIDTVVKHYQKLNVLVNNAGIL-EAGSIENTSLEQYDKIMNVNVRSIYHL 121
D+ E + +++ V+ + L+ NNAG L G I + S+E + + ++ N+ S +
Sbjct: 65 DVGDEALHEALVELAVRRFGGLDTAFNNAGALGAMGEISSLSVEGWRETLDTNLTSAFLA 124
Query: 122 TMLAVPHLIST-KGNIVNVSSVNG-LRSFPGVLAYCVSKAAVDQFTSCTALELASKGVRV 179
VP + + G++ SS G F GV Y SKA + A+EL ++G+RV
Sbjct: 125 AKYQVPAIAALGGGSLTFTSSFVGHTAGFAGVAPYAASKAGLIGLVQALAVELGARGIRV 184
Query: 180 NSVNPGVTLTNLHKNSGIDQQAYQNFLERSKETHALGRVGNPEEVAKAIAFLASDDASFT 239
N++ PG T T + + + HAL R+ PEE+A+A +LASD ASF
Sbjct: 185 NALLPGGTDTPANFANLPGAAP--ETRGFVEGLHALKRIARPEEIAEAALYLASDGASFV 242
Query: 240 TGEHLTVDGGRHA 252
TG L DGG
Sbjct: 243 TGAALLADGGASV 255
>3uxy_A Short-chain dehydrogenase/reductase SDR; structural genomics,
PSI-biology, NEW YORK structural genomi research
consortium, nysgrc; HET: NAD; 2.10A {Rhodobacter
sphaeroides}
Length = 266
Score = 254 bits (652), Expect = 2e-85
Identities = 78/252 (30%), Positives = 120/252 (47%), Gaps = 14/252 (5%)
Query: 3 FTGKVILVTGASSGIGAATALHLAKLDAKLAITGRNVEQLDKVSESCQSVSKNKPLVIQA 62
F GKV LVTGA+ GIG A L A++A+ R V + L +
Sbjct: 26 FEGKVALVTGAAGGIGGAVVTALRAAGARVAVADRAVAGIAAD------------LHLPG 73
Query: 63 DLTSEEDTKRIIDTVVKHYQKLNVLVNNAGILEAGSIENTSLEQYDKIMNVNVRSIYHLT 122
DL + V +L+++VNNAG++ G I T+ + + VNV + + +
Sbjct: 74 DLREAAYADGLPGAVAAGLGRLDIVVNNAGVISRGRITETTDADWSLSLGVNVEAPFRIC 133
Query: 123 MLAVPHLISTK-GNIVNVSSVNGLRSFPGVLAYCVSKAAVDQFTSCTALELASKGVRVNS 181
A+P + + G IVNV+S GLR PG YC++KAA+ T C ++ A +G+R+N+
Sbjct: 134 RAAIPLMAAAGGGAIVNVASCWGLRPGPGHALYCLTKAALASLTQCMGMDHAPQGIRINA 193
Query: 182 VNPGVTLTNL-HKNSGIDQQAYQNFLERSKETHALGRVGNPEEVAKAIAFLASDDASFTT 240
V P T + + T LGR+ PE++A + FLASD A +
Sbjct: 194 VCPNEVNTPMLRTGFAKRGFDPDRAVAELGRTVPLGRIAEPEDIADVVLFLASDAARYLC 253
Query: 241 GEHLTVDGGRHA 252
G + V+GG+
Sbjct: 254 GSLVEVNGGKAV 265
>1zem_A Xylitol dehydrogenase; rossmann fold, dinucleotide-binding domain,
oxidoreductase; HET: NAD; 1.90A {Gluconobacter oxydans}
SCOP: c.2.1.2
Length = 262
Score = 251 bits (643), Expect = 3e-84
Identities = 80/261 (30%), Positives = 130/261 (49%), Gaps = 13/261 (4%)
Query: 1 MNFTGKVILVTGASSGIGAATALHLAKLDAKLAITGRNVEQLDKVSESCQSVSKNKPLVI 60
F GKV LVTGA IG ATAL LA+ +A+ N E L+K S + +
Sbjct: 3 KKFNGKVCLVTGAGGNIGLATALRLAEEGTAIALLDMNREALEKAEASVREKGV-EARSY 61
Query: 61 QADLTSEEDTKRIIDTVVKHYQKLNVLVNNAGIL-EAGSIENTSLEQYDKIMNVNVRSIY 119
D+TSEE +D+VV+ + K++ L NNAG +++ + + +++ +NV +
Sbjct: 62 VCDVTSEEAVIGTVDSVVRDFGKIDFLFNNAGYQGAFAPVQDYPSDDFARVLTINVTGAF 121
Query: 120 HLTMLAVPHLISTK-GNIVNVSSVNGLRSFPGVLAYCVSKAAVDQFTSCTALELASKGVR 178
H+ +I+ G IVN +S+ G++ P + AY SK A+ T AL+LA +R
Sbjct: 122 HVLKAVSRQMITQNYGRIVNTASMAGVKGPPNMAAYGTSKGAIIALTETAALDLAPYNIR 181
Query: 179 VNSVNPGVTLTNLHKNSGIDQQAY----------QNFLERSKETHALGRVGNPEEVAKAI 228
VN+++PG ++ QA + ++ + + R G+ E+ +
Sbjct: 182 VNAISPGYMGPGFMWERQVELQAKVGSQYFSTDPKVVAQQMIGSVPMRRYGDINEIPGVV 241
Query: 229 AFLASDDASFTTGEHLTVDGG 249
AFL DD+SF TG +L + GG
Sbjct: 242 AFLLGDDSSFMTGVNLPIAGG 262
>1hdc_A 3-alpha, 20 beta-hydroxysteroid dehydrogenase; oxidoreductase; HET:
CBO; 2.20A {Streptomyces exfoliatus} SCOP: c.2.1.2 PDB:
2hsd_A*
Length = 254
Score = 251 bits (643), Expect = 3e-84
Identities = 77/249 (30%), Positives = 126/249 (50%), Gaps = 12/249 (4%)
Query: 3 FTGKVILVTGASSGIGAATALHLAKLDAKLAITGRNVEQLDKVSESCQSVSKNKPLVIQA 62
+GK +++TG + G+GA A A++ + E+ + +
Sbjct: 3 LSGKTVIITGGARGLGAEAARQAVAAGARVVLADVLDEEGAATAREL----GDAARYQHL 58
Query: 63 DLTSEEDTKRIIDTVVKHYQKLNVLVNNAGILEAGSIENTSLEQYDKIMNVNVRSIYHLT 122
D+T EED +R++ + + ++ LVNNAGI +E S+E++ K++ +N+ ++
Sbjct: 59 DVTIEEDWQRVVAYAREEFGSVDGLVNNAGISTGMFLETESVERFRKVVEINLTGVFIGM 118
Query: 123 MLAVPHLISTK-GNIVNVSSVNGLRSFPGVLAYCVSKAAVDQFTSCTALELASKGVRVNS 181
+P + G+IVN+SS GL +Y SK V + A+EL + +RVNS
Sbjct: 119 KTVIPAMKDAGGGSIVNISSAAGLMGLALTSSYGASKWGVRGLSKLAAVELGTDRIRVNS 178
Query: 182 VNPGVTLTNLHKNSGIDQQAYQNFLERSKETHALGRVGN-PEEVAKAIAFLASDDASFTT 240
V+PG+T T + +GI Q E + +GRVGN P E+A A+ L SD +S+ T
Sbjct: 179 VHPGMTYTPMTAETGIRQG------EGNYPNTPMGRVGNEPGEIAGAVVKLLSDTSSYVT 232
Query: 241 GEHLTVDGG 249
G L VDGG
Sbjct: 233 GAELAVDGG 241
>3ai3_A NADPH-sorbose reductase; rossmann-fold, NADPH-dependent reductase,
short chain dehydrogenase/reductase, oxidoreductase;
HET: NAP SOL SOE; 1.80A {Gluconobacter frateurii} PDB:
3ai2_A* 3ai1_A*
Length = 263
Score = 250 bits (642), Expect = 4e-84
Identities = 75/258 (29%), Positives = 129/258 (50%), Gaps = 11/258 (4%)
Query: 1 MNFTGKVILVTGASSGIGAATALHLAKLDAKLAITGRNVEQLDKVSESCQSVSKNKPLVI 60
M +GKV ++TG+SSGIG A A AK A + + R V++L + + S + + L +
Sbjct: 3 MGISGKVAVITGSSSGIGLAIAEGFAKEGAHIVLVARQVDRLHEAARSLKEKFGVRVLEV 62
Query: 61 QADLTSEEDTKRIIDTVVKHYQKLNVLVNNAGILEAGSIENTSLEQYDKIMNVNVRSIYH 120
D+ + E ++++V + ++LVNNAG +I + E++ + V +
Sbjct: 63 AVDVATPEGVDAVVESVRSSFGGADILVNNAGTGSNETIMEAADEKWQFYWELLVMAAVR 122
Query: 121 LTMLAVPHLISTK-GNIVNVSSVNGLRSFPGVLAYCVSKAAVDQFTSCTALELASKGVRV 179
L VP + + G I++ +S+ ++ Y V+KAA+ F+ A E+ +RV
Sbjct: 123 LARGLVPGMRARGGGAIIHNASICAVQPLWYEPIYNVTKAALMMFSKTLATEVIKDNIRV 182
Query: 180 NSVNPGVTLT--------NLHKNSGIDQQAYQNFLERSKETHALGRVGNPEEVAKAIAFL 231
N +NPG+ LT L K++G D + Y + E + R +PEE+A FL
Sbjct: 183 NCINPGLILTPDWIKTAKELTKDNGGDWKGYLQ--SVADEHAPIKRFASPEELANFFVFL 240
Query: 232 ASDDASFTTGEHLTVDGG 249
S+ A+++ G VDGG
Sbjct: 241 CSERATYSVGSAYFVDGG 258
>1nff_A Putative oxidoreductase RV2002; directed evolution, GFP, SDR,
hydroxysteroid dehydrogenase, structural genomics, PSI;
HET: NAD; 1.80A {Mycobacterium tuberculosis} SCOP:
c.2.1.2 PDB: 1nfq_A* 1nfr_A*
Length = 260
Score = 249 bits (639), Expect = 1e-83
Identities = 80/248 (32%), Positives = 126/248 (50%), Gaps = 16/248 (6%)
Query: 3 FTGKVILVTGASSGIGAATALHLAKLDAKLAITGRNVEQLDKVSESCQSVSKNKPLVIQA 62
TGKV LV+G + G+GA+ + AK+ E+ ++ + +
Sbjct: 5 LTGKVALVSGGARGMGASHVRAMVAEGAKVVFGDILDEEGKAMAAEL----ADAARYVHL 60
Query: 63 DLTSEEDTKRIIDTVVKHYQKLNVLVNNAGILEAGSIENTSLEQYDKIMNVNVRSIYHLT 122
D+T K +DT V + L+VLVNNAGIL G+IE+ +L ++ +I++VN+ ++
Sbjct: 61 DVTQPAQWKAAVDTAVTAFGGLHVLVNNAGILNIGTIEDYALTEWQRILDVNLTGVFLGI 120
Query: 123 MLAVPHLIST-KGNIVNVSSVNGLRSFPGVLAYCVSKAAVDQFTSCTALELASKGVRVNS 181
V + +G+I+N+SS+ GL Y +K AV T TALEL G+RVNS
Sbjct: 121 RAVVKPMKEAGRGSIINISSIEGLAGTVACHGYTATKFAVRGLTKSTALELGPSGIRVNS 180
Query: 182 VNPGVTLTNLHKNSGIDQQAYQNFLERSKETHALGRVGNPEEVAKAIAFLASDDASFTTG 241
++PG+ T + + ALGR P EV+ + +LASD++S++TG
Sbjct: 181 IHPGLVKTPMTDW-----------VPEDIFQTALGRAAEPVEVSNLVVYLASDESSYSTG 229
Query: 242 EHLTVDGG 249
VDGG
Sbjct: 230 AEFVVDGG 237
>3lf2_A Short chain oxidoreductase Q9HYA2; SDR, SCOR, rossmann fold; HET:
NAP; 2.30A {Pseudomonas aeruginosa} PDB: 3lf1_A*
Length = 265
Score = 249 bits (639), Expect = 1e-83
Identities = 73/261 (27%), Positives = 115/261 (44%), Gaps = 10/261 (3%)
Query: 2 NFTGKVILVTGASSGIGAATALHLAKLDAKLAITGRNVEQLDKVSESCQSVSK-NKPLVI 60
+ + V +VTG SSGIG AT L + A +A R+ E+L + + +
Sbjct: 5 DLSEAVAVVTGGSSGIGLATVELLLEAGAAVAFCARDGERLRAAESALRQRFPGARLFAS 64
Query: 61 QADLTSEEDTKRIIDTVVKHYQKLNVLVNNAGILEAGSIENTSLEQYDKIMNVNVRSIYH 120
D+ + + + ++LVNNAG + T+ E + + + + S+ H
Sbjct: 65 VCDVLDALQVRAFAEACERTLGCASILVNNAGQGRVSTFAETTDEAWSEELQLKFFSVIH 124
Query: 121 LTMLAVPHLISTK-GNIVNVSSVNGLRSFPGVLAYCVSKAAVDQFTSCTALELASKGVRV 179
+P L S IV V+S+ + P ++A ++A V A E A KGVRV
Sbjct: 125 PVRAFLPQLESRADAAIVCVNSLLASQPEPHMVATSAARAGVKNLVRSMAFEFAPKGVRV 184
Query: 180 NSVNPGVTLTNL------HKNSGIDQQAYQNFLERSKETHALGRVGNPEEVAKAIAFLAS 233
N + G+ + + A + LGR+G P E A+AI FLAS
Sbjct: 185 NGILIGLVESGQWRRRFEAREERELDWAQWTAQLARNKQIPLGRLGKPIEAARAILFLAS 244
Query: 234 DDASFTTGEHLTVDGG--RHA 252
+++TTG H+ V GG RHA
Sbjct: 245 PLSAYTTGSHIDVSGGLSRHA 265
>2ag5_A DHRS6, dehydrogenase/reductase (SDR family) member 6;
protein-CO-factor complex, structural genomics,
structural G consortium, SGC, oxidoreductase; HET: NAD;
1.84A {Homo sapiens} SCOP: c.2.1.2
Length = 246
Score = 248 bits (637), Expect = 2e-83
Identities = 80/256 (31%), Positives = 129/256 (50%), Gaps = 21/256 (8%)
Query: 1 MN-FTGKVILVTGASSGIGAATALHLAKLDAKLAITGRNVEQLDKVSESCQSVSKNKPLV 59
M GKVI++T A+ GIG A AL A+ AK+ T N +L ++ +
Sbjct: 1 MGRLDGKVIILTAAAQGIGQAAALAFAREGAKVIATDINESKLQELEKY------PGIQT 54
Query: 60 IQADLTSEEDTKRIIDTVVKHYQKLNVLVNNAGILEAGSIENTSLEQYDKIMNVNVRSIY 119
D+T ++ ID ++L+VL N AG + G++ + + +D MN+NVRS+Y
Sbjct: 55 RVLDVTKKKQ----IDQFANEVERLDVLFNVAGFVHHGTVLDCEEKDWDFSMNLNVRSMY 110
Query: 120 HLTMLAVPHLISTK-GNIVNVSSVNG-LRSFPGVLAYCVSKAAVDQFTSCTALELASKGV 177
+ +P +++ K GNI+N+SSV ++ Y +KAAV T A + +G+
Sbjct: 111 LMIKAFLPKMLAQKSGNIINMSSVASSVKGVVNRCVYSTTKAAVIGLTKSVAADFIQQGI 170
Query: 178 RVNSVNPGVTLT----NLHKNSGIDQQAYQNFLERSKETHALGRVGNPEEVAKAIAFLAS 233
R N V PG T + G ++A +FL+R GR EE+A +LAS
Sbjct: 171 RCNCVCPGTVDTPSLQERIQARGNPEEARNDFLKR----QKTGRFATAEEIAMLCVYLAS 226
Query: 234 DDASFTTGEHLTVDGG 249
D++++ TG + +DGG
Sbjct: 227 DESAYVTGNPVIIDGG 242
>1oaa_A Sepiapterin reductase; tetrahydrobiopterin, oxidoreductase; HET:
NAP; 1.25A {Mus musculus} SCOP: c.2.1.2 PDB: 1nas_A*
1sep_A* 1z6z_A*
Length = 259
Score = 249 bits (637), Expect = 2e-83
Identities = 61/262 (23%), Positives = 111/262 (42%), Gaps = 24/262 (9%)
Query: 3 FTGKVILVTGASSGIGAATALHLAKL---DAKLAITGRNVEQLDKVSESCQSVSKN-KPL 58
V ++TGAS G G A A LA+L + + ++ R+ L ++ E + + K +
Sbjct: 4 LGCAVCVLTGASRGFGRALAPQLARLLSPGSVMLVSARSESMLRQLKEELGAQQPDLKVV 63
Query: 59 VIQADLTSEEDTKRIIDTVVK----HYQKLNVLVNNAGILE---AGSIENTSLEQYDKIM 111
+ ADL +E +R++ V + + +L+NNA L G + L + +
Sbjct: 64 LAAADLGTEAGVQRLLSAVRELPRPEGLQRLLLINNAATLGDVSKGFLNVNDLAEVNNYW 123
Query: 112 NVNVRSIYHLTMLAVPHLISTK---GNIVNVSSVNGLRSFPGVLAYCVSKAAVDQFTSCT 168
+N+ S+ LT + + +VN+SS+ L+ + G YC KAA D
Sbjct: 124 ALNLTSMLCLTSGTLNAFQDSPGLSKTVVNISSLCALQPYKGWGLYCAGKAARDMLYQVL 183
Query: 169 ALELASKGVRVNSVNPGVTLTNLHK---NSGIDQQAYQNFLERSKETHALGRVGNPEEVA 225
A E VRV S PG ++ + + D + ++ + G + + A
Sbjct: 184 AAE--EPSVRVLSYAPGPLDNDMQQLARETSKDPELRSKL----QKLKSDGALVDCGTSA 237
Query: 226 KAIAFLASDDASFTTGEHLTVD 247
+ + L D +F +G H+
Sbjct: 238 QKLLGLLQKD-TFQSGAHVDFY 258
>3zv4_A CIS-2,3-dihydrobiphenyl-2,3-DIOL dehydrogenase; oxidoreductase,
short chain dehydrogenase/oxidoreductase, SD comamonas
testosteroni; 1.80A {Pandoraea pnomenusa} PDB: 2y99_A*
3zv3_A 2y93_A 3zv5_A* 3zv6_A* 1bdb_A*
Length = 281
Score = 249 bits (637), Expect = 4e-83
Identities = 74/259 (28%), Positives = 116/259 (44%), Gaps = 15/259 (5%)
Query: 1 MNFTGKVILVTGASSGIGAATALHLAKLDAKLAITGRNVEQLDKVSESCQSVSKNKPLVI 60
M TG+V L+TG +SG+G A A++A+ ++ E+L ++ + + +
Sbjct: 1 MKLTGEVALITGGASGLGRALVDRFVAEGARVAVLDKSAERLRELEVAHGG----NAVGV 56
Query: 61 QADLTSEEDTKRIIDTVVKHYQKLNVLVNNAGILEAGSI-----ENTSLEQYDKIMNVNV 115
D+ S +D KR + + + K++ L+ NAGI + + E+ +D I +VNV
Sbjct: 57 VGDVRSLQDQKRAAERCLAAFGKIDTLIPNAGIWDYSTALADLPEDKIDAAFDDIFHVNV 116
Query: 116 RSIYHLTMLAVPHLISTKGNIVNVSSVNGLRSFPGVLAYCVSKAAVDQFTSCTALELASK 175
+ H +P L+S++G++V S G G Y +K AV A ELA
Sbjct: 117 KGYIHAVKACLPALVSSRGSVVFTISNAGFYPNGGGPLYTATKHAVVGLVRQMAFELAPH 176
Query: 176 GVRVNSVNPGVTLTNLHKNSGIDQQAYQN----FLERSKETHALGRVGNPEEVAKAIAFL 231
VRVN V PG T+L S + + K +GR+ EE A F
Sbjct: 177 -VRVNGVAPGGMNTDLRGPSSLGLSEQSISSVPLADMLKSVLPIGRMPALEEYTGAYVFF 235
Query: 232 ASDDASF-TTGEHLTVDGG 249
A+ S TG L DGG
Sbjct: 236 ATRGDSLPATGALLNYDGG 254
>1fmc_A 7 alpha-hydroxysteroid dehydrogenase; short-chain
dehydrogenase/reductase, bIle acid catabolism,
oxidoreductase; HET: CHO NAD; 1.80A {Escherichia coli}
SCOP: c.2.1.2 PDB: 1ahi_A* 1ahh_A*
Length = 255
Score = 247 bits (634), Expect = 6e-83
Identities = 72/250 (28%), Positives = 122/250 (48%), Gaps = 8/250 (3%)
Query: 1 MNFTGKVILVTGASSGIGAATALHLAKLDAKLAITGRNVEQLDKVSESCQSVSKNKPLVI 60
+ GK ++TGA +GIG A+ A A + ++ N + + V + Q + +
Sbjct: 7 LRLDGKCAIITGAGAGIGKEIAITFATAGASVVVSDINADAANHVVDEIQQLG-GQAFAC 65
Query: 61 QADLTSEEDTKRIIDTVVKHYQKLNVLVNNAGILEAGSIENTSLEQYDKIMNVNVRSIYH 120
+ D+TSE++ + D + K+++LVNNAG + + + + +NV S +H
Sbjct: 66 RCDITSEQELSALADFAISKLGKVDILVNNAGGGGPKPFD-MPMADFRRAYELNVFSFFH 124
Query: 121 LTMLAVPHLISTK-GNIVNVSSVNGLRSFPGVLAYCVSKAAVDQFTSCTALELASKGVRV 179
L+ L P + G I+ ++S+ + +Y SKAA A +L K +RV
Sbjct: 125 LSQLVAPEMEKNGGGVILTITSMAAENKNINMTSYASSKAAASHLVRNMAFDLGEKNIRV 184
Query: 180 NSVNPGVTLTNLHKNSGIDQQAYQNFLERSKETHALGRVGNPEEVAKAIAFLASDDASFT 239
N + PG LT+ K S I + Q L+ + R+G P+++A A FL S AS+
Sbjct: 185 NGIAPGAILTDALK-SVITPEIEQKMLQH----TPIRRLGQPQDIANAALFLCSPAASWV 239
Query: 240 TGEHLTVDGG 249
+G+ LTV GG
Sbjct: 240 SGQILTVSGG 249
>3u5t_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics,
PSI-biology, NEW YORK structural genomi research
consortium, nysgrc; 2.40A {Sinorhizobium meliloti}
Length = 267
Score = 247 bits (634), Expect = 8e-83
Identities = 78/250 (31%), Positives = 126/250 (50%), Gaps = 8/250 (3%)
Query: 1 MNFTGKVILVTGASSGIGAATALHLAKLDAKLAIT-GRNVEQLDKVSESCQSVSKNKPLV 59
M T KV +VTGAS GIGAA A LA + I ++V+ ++ + K L
Sbjct: 23 MMETNKVAIVTGASRGIGAAIAARLASDGFTVVINYAGKAAAAEEVAGKIEA-AGGKALT 81
Query: 60 IQADLTSEEDTKRIIDTVVKHYQKLNVLVNNAGILEAGSIENTSLEQYDKIMNVNVRSIY 119
QAD++ +R+ T + + ++VLVNNAGI+ +I T +D+++ VN++ +
Sbjct: 82 AQADVSDPAAVRRLFATAEEAFGGVDVLVNNAGIMPLTTIAETGDAVFDRVIAVNLKGTF 141
Query: 120 HLTMLAVPHLISTKGNIVNVSSVNGLRSFPGVLAYCVSKAAVDQFTSCTALELASKGVRV 179
+ A L G I+N+S+ P Y +KA V+ T + EL + + V
Sbjct: 142 NTLREAAQRL-RVGGRIINMSTSQVGLLHPSYGIYAAAKAGVEAMTHVLSKELRGRDITV 200
Query: 180 NSVNPGVTLTNLHKNSGIDQQAYQNFLERSKETHALGRVGNPEEVAKAIAFLASDDASFT 239
N+V PG T T+L D+ +R + L R+G P+++A A+AFLA D ++
Sbjct: 201 NAVAPGPTATDLFLEGKSDEVR-----DRFAKLAPLERLGTPQDIAGAVAFLAGPDGAWV 255
Query: 240 TGEHLTVDGG 249
G+ L +GG
Sbjct: 256 NGQVLRANGG 265
>3f1l_A Uncharacterized oxidoreductase YCIK; E. coli, NADP+,; 0.95A
{Escherichia coli K12} PDB: 3f1k_A 3e9q_A* 3f5q_A
3gz4_A* 3f5s_A 3gy0_A* 3iah_A* 3g1t_A
Length = 252
Score = 247 bits (633), Expect = 9e-83
Identities = 68/254 (26%), Positives = 116/254 (45%), Gaps = 19/254 (7%)
Query: 3 FTGKVILVTGASSGIGAATALHLAKLDAKLAITGRNVEQLDKVSESCQSVSKNKPLVIQA 62
++ILVTGAS GIG A+ A+ A + + GRN E+L +V+ + +P
Sbjct: 10 LNDRIILVTGASDGIGREAAMTYARYGATVILLGRNEEKLRQVASHINEETGRQPQWFIL 69
Query: 63 DL--TSEEDTKRIIDTVVKHYQKLNVLVNNAGIL-EAGSIENTSLEQYDKIMNVNVRSIY 119
DL + E+ +++ + +Y +L+ +++NAG+L + + + + + +M VNV + +
Sbjct: 70 DLLTCTSENCQQLAQRIAVNYPRLDGVLHNAGLLGDVCPMSEQNPQVWQDVMQVNVNATF 129
Query: 120 HLTMLAVPHLI-STKGNIVNVSSVNGLRSFPGVLAYCVSKAAVDQFTSCTALELASKGVR 178
LT +P L+ S G++V SS G + AY SK A + A E +R
Sbjct: 130 MLTQALLPLLLKSDAGSLVFTSSSVGRQGRANWGAYAASKFATEGMMQVLADEYQQ-RLR 188
Query: 179 VNSVNPGVTLTNLHKNSGIDQQAYQNFLERSKETHALGRVGNPEEVAKAIAFLASDDASF 238
VN +NPG T T + A+ T ++ P ++ +L DD+
Sbjct: 189 VNCINPGGTRTAMRA------SAF--------PTEDPQKLKTPADIMPLYLWLMGDDSRR 234
Query: 239 TTGEHLTVDGGRHA 252
TG GR
Sbjct: 235 KTGMTFDAQPGRKP 248
>3r3s_A Oxidoreductase; structural genomics, csgid, center for structural
genomics O infectious diseases, 3-layer(ABA) sandwich,
rossmann fold; HET: NAD; 1.25A {Salmonella enterica
subsp}
Length = 294
Score = 247 bits (633), Expect = 3e-82
Identities = 73/251 (29%), Positives = 123/251 (49%), Gaps = 9/251 (3%)
Query: 4 TGKVILVTGASSGIGAATALHLAKLDAKLAITGRNVEQLDKVSESCQSVSKN--KPLVIQ 61
+ LVTG SGIG A A+ A+ A +AI E+ D + + + K +++
Sbjct: 48 KDRKALVTGGDSGIGRAAAIAYAREGADVAINYLPAEEED-AQQVKALIEECGRKAVLLP 106
Query: 62 ADLTSEEDTKRIIDTVVKHYQKLNVLVNNAGIL-EAGSIENTSLEQYDKIMNVNVRSIYH 120
DL+ E + ++ + L++L AG I++ + EQ+ + VNV +++
Sbjct: 107 GDLSDESFARSLVHKAREALGGLDILALVAGKQTAIPEIKDLTSEQFQQTFAVNVFALFW 166
Query: 121 LTMLAVPHLISTKGNIVNVSSVNGLRSFPGVLAYCVSKAAVDQFTSCTALELASKGVRVN 180
+T A+P L +I+ SS+ + P +L Y +KAA+ ++ A ++A KG+RVN
Sbjct: 167 ITQEAIPLL-PKGASIITTSSIQAYQPSPHLLDYAATKAAILNYSRGLAKQVAEKGIRVN 225
Query: 181 SVNPGVTLTNLHKNSGIDQQAYQNFLERSKETHALGRVGNPEEVAKAIAFLASDDASFTT 240
V PG T L + G Q F +++ + R G P E+A +LAS ++S+ T
Sbjct: 226 IVAPGPIWTALQISGGQTQDKIPQFGQQT----PMKRAGQPAELAPVYVYLASQESSYVT 281
Query: 241 GEHLTVDGGRH 251
E V GG H
Sbjct: 282 AEVHGVCGGEH 292
>4e6p_A Probable sorbitol dehydrogenase (L-iditol 2-dehyd; NAD(P)-binding,
structural genomics, PSI-biology; HET: MSE; 2.10A
{Sinorhizobium meliloti} PDB: 1k2w_A
Length = 259
Score = 245 bits (629), Expect = 4e-82
Identities = 68/255 (26%), Positives = 111/255 (43%), Gaps = 11/255 (4%)
Query: 2 NFTGKVILVTGASSGIGAATALHLAKLDAKLAITGRNVEQLDKVSESCQSVSKNKPLVIQ 61
GK L+TG++ GIG A A + A +AI ++E+ + + +Q
Sbjct: 5 RLEGKSALITGSARGIGRAFAEAYVREGATVAIADIDIERARQAAAEI----GPAAYAVQ 60
Query: 62 ADLTSEEDTKRIIDTVVKHYQKLNVLVNNAGILEAGSIENTSLEQYDKIMNVNVRSIYHL 121
D+T ++ I V+H L++LVNNA + + I + E Y+K+ +NV
Sbjct: 61 MDVTRQDSIDAAIAATVEHAGGLDILVNNAALFDLAPIVEITRESYEKLFAINVAGTLFT 120
Query: 122 TMLAVPHLIS--TKGNIVNVSSVNGLRSFPGVLAYCVSKAAVDQFTSCTALELASKGVRV 179
A +I+ G I+N++S G R V YC +KAAV T L+L + V
Sbjct: 121 LQAAARQMIAQGRGGKIINMASQAGRRGEALVAIYCATKAAVISLTQSAGLDLIKHRINV 180
Query: 180 NSVNPGVTLTNL-----HKNSGIDQQAYQNFLERSKETHALGRVGNPEEVAKAIAFLASD 234
N++ PGV + + + E GR+G E++ FLAS
Sbjct: 181 NAIAPGVVDGEHWDGVDALFARYENRPRGEKKRLVGEAVPFGRMGTAEDLTGMAIFLASA 240
Query: 235 DASFTTGEHLTVDGG 249
++ + + VDGG
Sbjct: 241 ESDYIVSQTYNVDGG 255
>3o38_A Short chain dehydrogenase; tuberculosis, ortholog from A
non-pathogenic dehydrogenase, structural genomics; 1.95A
{Mycobacterium smegmatis}
Length = 266
Score = 245 bits (627), Expect = 1e-81
Identities = 80/251 (31%), Positives = 129/251 (51%), Gaps = 8/251 (3%)
Query: 3 FTGKVILVTGAS-SGIGAATALHLAKLDAKLAITGRNVEQLDKVSESCQSVSKNKPLVIQ 61
GKV+LVT A+ +GIG+ TA A + I+ + +L + + + + +
Sbjct: 20 LKGKVVLVTAAAGTGIGSTTARRALLEGADVVISDYHERRLGETRDQLADLGLGRVEAVV 79
Query: 62 ADLTSEEDTKRIIDTVVKHYQKLNVLVNNAGILEAGSIENTSLEQYDKIMNVNVRSIYHL 121
D+TS E +I V+ +L+VLVNNAG+ + + + E++D+++NV + S+
Sbjct: 80 CDVTSTEAVDALITQTVEKAGRLDVLVNNAGLGGQTPVVDMTDEEWDRVLNVTLTSVMRA 139
Query: 122 TMLAVPHLISTK--GNIVNVSSVNGLRSFPGVLAYCVSKAAVDQFTSCTALELASKGVRV 179
T A+ + G IVN +SV G R+ Y +KA V T C+A+E GVR+
Sbjct: 140 TRAALRYFRGVDHGGVIVNNASVLGWRAQHSQSHYAAAKAGVMALTRCSAIEAVEFGVRI 199
Query: 180 NSVNPGVTLTNLHKNSGIDQQAYQNFLERSKETHALGRVGNPEEVAKAIAFLASDDASFT 239
N+V+P + +++ + L+R A GR P EVA IAFLASD +S+
Sbjct: 200 NAVSPSIARHKF-----LEKTSSSELLDRLASDEAFGRAAEPWEVAATIAFLASDYSSYM 254
Query: 240 TGEHLTVDGGR 250
TGE ++V R
Sbjct: 255 TGEVVSVSSQR 265
>3awd_A GOX2181, putative polyol dehydrogenase; oxidoreductase; 1.80A
{Gluconobacter oxydans}
Length = 260
Score = 244 bits (625), Expect = 2e-81
Identities = 71/253 (28%), Positives = 118/253 (46%), Gaps = 9/253 (3%)
Query: 1 MNFTGKVILVTGASSGIGAATALHLAKLDAKLAITGRNVEQLDKVSESCQSVSKNKPLVI 60
+ +V +VTG + IG A LA+ A++ I + K E + + +
Sbjct: 9 LRLDNRVAIVTGGAQNIGLACVTALAEAGARVIIADLDEAMATKAVEDLRM-EGHDVSSV 67
Query: 61 QADLTSEEDTKRIIDTVVKHYQKLNVLVNNAGI-LEAGSIENTSLEQYDKIMNVNVRSIY 119
D+T+ E + + +V + ++++LV AGI + E+ + Q+ K +++N+ ++
Sbjct: 68 VMDVTNTESVQNAVRSVHEQEGRVDILVACAGICISEVKAEDMTDGQWLKQVDINLNGMF 127
Query: 120 HLTMLAVPHLISTK-GNIVNVSSVNGL--RSFPGVLAYCVSKAAVDQFTSCTALELASKG 176
++ K G IV + S++GL AY SKA V Q+ A E A G
Sbjct: 128 RSCQAVGRIMLEQKQGVIVAIGSMSGLIVNRPQQQAAYNASKAGVHQYIRSLAAEWAPHG 187
Query: 177 VRVNSVNPGVTLTNLHKNSGIDQQAYQNFLERSKETHALGRVGNPEEVAKAIAFLASDDA 236
+R N+V P T L + + Y ++ +GRVG P+EVA + FLASD A
Sbjct: 188 IRANAVAPTYIETTLTRFGMEKPELYDAWIAG----TPMGRVGQPDEVASVVQFLASDAA 243
Query: 237 SFTTGEHLTVDGG 249
S TG + VD G
Sbjct: 244 SLMTGAIVNVDAG 256
>3v2g_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics,
PSI-biology, protein structure initiati nysgrc; 2.30A
{Sinorhizobium meliloti}
Length = 271
Score = 244 bits (625), Expect = 2e-81
Identities = 84/254 (33%), Positives = 131/254 (51%), Gaps = 11/254 (4%)
Query: 1 MNFTGKVILVTGASSGIGAATALHLAKLDAKLAIT-GRNVEQLDKVSESCQSVSKNKPLV 59
++ GK VTG S GIGAA A LA A +A+T E+ V + + + +
Sbjct: 27 ISLAGKTAFVTGGSRGIGAAIAKRLALEGAAVALTYVNAAERAQAVVSEIEQ-AGGRAVA 85
Query: 60 IQADLTSEEDTKRIIDTVVKHYQKLNVLVNNAGILEAGSIENTSLEQYDKIMNVNVRSIY 119
I+AD E ++ I V+ L++LVN+AGI + +E T++ +D++M VN R+ +
Sbjct: 86 IRADNRDAEAIEQAIRETVEALGGLDILVNSAGIWHSAPLEETTVADFDEVMAVNFRAPF 145
Query: 120 HLTMLAVPHLISTKGNIVNVSS-VNGLRSFPGVLAYCVSKAAVDQFTSCTALELASKGVR 178
A HL G I+ + S + L +PG+ Y SKAA+ T A +L +G+
Sbjct: 146 VAIRSASRHL-GDGGRIITIGSNLAELVPWPGISLYSASKAALAGLTKGLARDLGPRGIT 204
Query: 179 VNSVNPGVTLTNLHKNSGIDQQAYQNFLERSKETHALGRVGNPEEVAKAIAFLASDDASF 238
VN V+PG T T+++ G + E +E A G G P+++A +A+LA F
Sbjct: 205 VNIVHPGSTDTDMNPADG-------DHAEAQRERIATGSYGEPQDIAGLVAWLAGPQGKF 257
Query: 239 TTGEHLTVDGGRHA 252
TG LT+DGG +A
Sbjct: 258 VTGASLTIDGGANA 271
>3edm_A Short chain dehydrogenase; structural genomics, oxidoreductase,
PSI-2, P structure initiative; 2.30A {Agrobacterium
tumefaciens str}
Length = 259
Score = 243 bits (624), Expect = 2e-81
Identities = 80/250 (32%), Positives = 123/250 (49%), Gaps = 11/250 (4%)
Query: 3 FTGKVILVTGASSGIGAATALHLAKLDAKLAIT-GRNVEQLDKVSESCQSVSKNKPLVIQ 61
FT + I+V GA IG A A+ A+ A + +T E + + + L I+
Sbjct: 6 FTNRTIVVAGAGRDIGRACAIRFAQEGANVVLTYNGAAEGAATAVAEIEKLGR-SALAIK 64
Query: 62 ADLTSEEDTKRIIDTVVKHYQKLNVLVNNAGILEA-GSIENTSLEQYDKIMNVNVRSIYH 120
ADLT+ + + I + +++ LV+ AG L A +I + ++++VN+ S++
Sbjct: 65 ADLTNAAEVEAAISAAADKFGEIHGLVHVAGGLIARKTIAEMDEAFWHQVLDVNLTSLFL 124
Query: 121 LTMLAVPHLISTKGNIVNVSSVNGLR-SFPGVLAYCVSKAAVDQFTSCTALELASKGVRV 179
A+P + + G IV SS G PG LAY SK AV FT A E+ +RV
Sbjct: 125 TAKTALPKM-AKGGAIVTFSSQAGRDGGGPGALAYATSKGAVMTFTRGLAKEVGP-KIRV 182
Query: 180 NSVNPGVTLTNLHKNSGIDQQAYQNFLERSKETHALGRVGNPEEVAKAIAFLASDDASFT 239
N+V PG+ T H + ER +L R G+ E+VA +AFLASDDA++
Sbjct: 183 NAVCPGMISTTFHDTFTKPEVR-----ERVAGATSLKREGSSEDVAGLVAFLASDDAAYV 237
Query: 240 TGEHLTVDGG 249
TG ++GG
Sbjct: 238 TGACYDINGG 247
>3oid_A Enoyl-[acyl-carrier-protein] reductase [NADPH]; fatty acid
synthesis, enoyl-ACP reductases, FABL, rossmann-L NADPH
binding, oxidoreductase; HET: TCL NDP; 1.80A {Bacillus
subtilis} PDB: 3oic_A*
Length = 258
Score = 243 bits (623), Expect = 3e-81
Identities = 64/249 (25%), Positives = 118/249 (47%), Gaps = 7/249 (2%)
Query: 3 FTGKVILVTGASSGIGAATALHLAKLDAKLAIT-GRNVEQLDKVSESCQSVSKNKPLVIQ 61
K LVTG+S G+G A A+ LA+ + I R+ + + +E + + K LV++
Sbjct: 2 EQNKCALVTGSSRGVGKAAAIRLAENGYNIVINYARSKKAALETAEEIEKLGV-KVLVVK 60
Query: 62 ADLTSEEDTKRIIDTVVKHYQKLNVLVNNAGILEAGSIENTSLEQYDKIMNVNVRSIYHL 121
A++ K + + + + +L+V VNNA + +D MN+N +++
Sbjct: 61 ANVGQPAKIKEMFQQIDETFGRLDVFVNNAASGVLRPVMELEETHWDWTMNINAKALLFC 120
Query: 122 TMLAVPHLISTK-GNIVNVSSVNGLRSFPGVLAYCVSKAAVDQFTSCTALELASKGVRVN 180
A + G+IV++SS+ +R VSKAA++ T A+EL+ K + VN
Sbjct: 121 AQEAAKLMEKNGGGHIVSISSLGSIRYLENYTTVGVSKAALEALTRYLAVELSPKQIIVN 180
Query: 181 SVNPGVTLTNLHKNSGIDQQAYQNFLERSKETHALGRVGNPEEVAKAIAFLASDDASFTT 240
+V+ G T+ K+ + ++ + + GR+ +++ + FL S A
Sbjct: 181 AVSGGAIDTDALKHFPNREDLLEDARQNT----PAGRMVEIKDMVDTVEFLVSSKADMIR 236
Query: 241 GEHLTVDGG 249
G+ + VDGG
Sbjct: 237 GQTIIVDGG 245
>2bgk_A Rhizome secoisolariciresinol dehydrogenase; oxidoreductase; 1.6A
{Podophyllum peltatum} SCOP: c.2.1.2 PDB: 2bgl_A*
2bgm_A*
Length = 278
Score = 243 bits (622), Expect = 9e-81
Identities = 70/251 (27%), Positives = 122/251 (48%), Gaps = 7/251 (2%)
Query: 3 FTGKVILVTGASSGIGAATALHLAKLDAKLAITGRNVEQLDKVSESCQSVSKNKPLVIQA 62
KV ++TG + GIG TA + AK+ I + KV + S + +
Sbjct: 14 LQDKVAIITGGAGGIGETTAKLFVRYGAKVVIADIADDHGQKVCNNIGS--PDVISFVHC 71
Query: 63 DLTSEEDTKRIIDTVVKHYQKLNVLVNNAGIL--EAGSIENTSLEQYDKIMNVNVRSIYH 120
D+T +ED + ++DT + + KL+++ N G+L SI E + ++M++NV +
Sbjct: 72 DVTKDEDVRNLVDTTIAKHGKLDIMFGNVGVLSTTPYSILEAGNEDFKRVMDINVYGAFL 131
Query: 121 LTMLAVPHLISTK-GNIVNVSSVNGLRSFPGV-LAYCVSKAAVDQFTSCTALELASKGVR 178
+ A +I K G+IV +S++ + GV Y +K AV T+ EL G+R
Sbjct: 132 VAKHAARVMIPAKKGSIVFTASISSFTAGEGVSHVYTATKHAVLGLTTSLCTELGEYGIR 191
Query: 179 VNSVNPGVTLTNLHKNSGIDQQAYQNFLERSKETHALGRVGNPEEVAKAIAFLASDDASF 238
VN V+P + + L + + L + G + E+VA A+A+LA D++ +
Sbjct: 192 VNCVSPYIVASPLLTDVFGVDSSRVEELAHQA-ANLKGTLLRAEDVADAVAYLAGDESKY 250
Query: 239 TTGEHLTVDGG 249
+G +L +DGG
Sbjct: 251 VSGLNLVIDGG 261
>3is3_A 17BETA-hydroxysteroid dehydrogenase; short chain dehydrogenase/REDU
SDR, fungi, oxidoreductase; HET: GOL; 1.48A
{Cochliobolus lunatus} PDB: 3qwf_A* 3qwh_A* 3qwi_A*
3itd_A
Length = 270
Score = 242 bits (619), Expect = 2e-80
Identities = 75/254 (29%), Positives = 128/254 (50%), Gaps = 10/254 (3%)
Query: 4 TGKVILVTGASSGIGAATALHLAKLDAKLAIT-GRNVEQLDKVSESCQSVSKNKPLVIQA 62
GKV LVTG+ GIGAA A+HL +L AK+ + + + +KV +++ + I+A
Sbjct: 17 DGKVALVTGSGRGIGAAVAVHLGRLGAKVVVNYANSTKDAEKVVSEIKALGS-DAIAIKA 75
Query: 63 DLTSEEDTKRIIDTVVKHYQKLNVLVNNAGILEAGSIENTSLEQYDKIMNVNVRSIYHLT 122
D+ + ++ D V H+ L++ V+N+G++ G +++ + E++D++ ++N R + +
Sbjct: 76 DIRQVPEIVKLFDQAVAHFGHLDIAVSNSGVVSFGHLKDVTEEEFDRVFSLNTRGQFFVA 135
Query: 123 MLAVPHLISTKGNIVNVSSVNGLR-SFPGVLAYCVSKAAVDQFTSCTALELASKGVRVNS 181
A HL + G IV SS S P Y SK AVD F + + K + VN+
Sbjct: 136 REAYRHL-TEGGRIVLTSSNTSKDFSVPKHSLYSGSKGAVDSFVRIFSKDCGDKKITVNA 194
Query: 182 VNPGVTLTNLHKNSGIDQQAYQN------FLERSKETHALGRVGNPEEVAKAIAFLASDD 235
V PG T+T++ + + L R G P++VA + FL S +
Sbjct: 195 VAPGGTVTDMFHEVSHHYIPNGTSYTAEQRQQMAAHASPLHRNGWPQDVANVVGFLVSKE 254
Query: 236 ASFTTGEHLTVDGG 249
+ G+ LT+DGG
Sbjct: 255 GEWVNGKVLTLDGG 268
>3ak4_A NADH-dependent quinuclidinone reductase; SDR, (R)-3-quinuclidinol,
chiral alcohol, oxidoreductase; HET: NAD; 2.00A
{Agrobacterium tumefaciens}
Length = 263
Score = 241 bits (618), Expect = 2e-80
Identities = 77/256 (30%), Positives = 117/256 (45%), Gaps = 11/256 (4%)
Query: 1 MNFTGKVILVTGASSGIGAATALHLAKLDAKLAITGRNVEQLDKVSESCQSVSKNKPLVI 60
+ +G+ +VTG S GIGAA A L K A +AI +V V +N +
Sbjct: 8 FDLSGRKAIVTGGSKGIGAAIARALDKAGATVAIADLDVMAAQAVVAGL----ENGGFAV 63
Query: 61 QADLTSEEDTKRIIDTVVKHYQKLNVLVNNAGILEAGSIENTSLEQYDKIMNVNVRSIYH 120
+ D+T + + ++L NAG+ + + E++D +VN R ++
Sbjct: 64 EVDVTKRASVDAAMQKAIDALGGFDLLCANAGVSTMRPAVDITDEEWDFNFDVNARGVFL 123
Query: 121 LTMLAVPHLIS--TKGNIVNVSSVNGLRSFPGVLAYCVSKAAVDQFTSCTALELASKGVR 178
+A H ++ TKG IVN +S+ P + Y SK AV +T A E+A K +R
Sbjct: 124 ANQIACRHFLASNTKGVIVNTASLAAKVGAPLLAHYSASKFAVFGWTQALAREMAPKNIR 183
Query: 179 VNSVNPGVTLTNLHKNSGIDQQAYQNFL-----ERSKETHALGRVGNPEEVAKAIAFLAS 233
VN V PG T + + I + + LGR+ PE+VA + FLAS
Sbjct: 184 VNCVCPGFVKTAMQEREIIWEAELRGMTPEAVRAEYVSLTPLGRIEEPEDVADVVVFLAS 243
Query: 234 DDASFTTGEHLTVDGG 249
D A F TG+ + V GG
Sbjct: 244 DAARFMTGQGINVTGG 259
>1xq1_A Putative tropinone reducatse; structural genomics, protein
structure initiative, CESG, AT1 reductively methylated
protein; 2.10A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB:
2q45_A
Length = 266
Score = 241 bits (618), Expect = 2e-80
Identities = 79/254 (31%), Positives = 123/254 (48%), Gaps = 8/254 (3%)
Query: 1 MNFTGKVILVTGASSGIGAATALHLAKLDAKLAITGRNVEQLDKVSESCQSVSKNKPLVI 60
+ K +LVTG + GIG A A A + RN +L++ Q +
Sbjct: 10 WSLKAKTVLVTGGTKGIGHAIVEEFAGFGAVIHTCARNEYELNECLSKWQK-KGFQVTGS 68
Query: 61 QADLTSEEDTKRIIDTVVKHY-QKLNVLVNNAGILEAGSIENTSLEQYDKIMNVNVRSIY 119
D + + ++++ TV + KL++L+NN G + + + + E + ++ N+ S Y
Sbjct: 69 VCDASLRPEREKLMQTVSSMFGGKLDILINNLGAIRSKPTLDYTAEDFSFHISTNLESAY 128
Query: 120 HLTMLAVPHLI-STKGNIVNVSSVNGLRSFPGVLAYCVSKAAVDQFTSCTALELASKGVR 178
HL+ LA P L S GNI+ +SS+ G+ S Y +K A++Q A E AS G+R
Sbjct: 129 HLSQLAHPLLKASGCGNIIFMSSIAGVVSASVGSIYSATKGALNQLARNLACEWASDGIR 188
Query: 179 VNSVNPGVTLTNLHKNSGIDQQAYQNFLERSKETHALGRVGNPEEVAKAIAFLASDDASF 238
N+V P V T L + D+ F + LGR G PEEV+ +AFL AS+
Sbjct: 189 ANAVAPAVIATPLAEAVYDDE-----FKKVVISRKPLGRFGEPEEVSSLVAFLCMPAASY 243
Query: 239 TTGEHLTVDGGRHA 252
TG+ + VDGG
Sbjct: 244 ITGQTICVDGGLTV 257
>1g0o_A Trihydroxynaphthalene reductase; protein-NADPH-active site
inhibitor complex, dinucleotide binding fold,
oxidoreductase; HET: NDP PYQ; 1.70A {Magnaporthe grisea}
SCOP: c.2.1.2 PDB: 1doh_A* 1g0n_A* 1ybv_A*
Length = 283
Score = 241 bits (618), Expect = 4e-80
Identities = 70/257 (27%), Positives = 130/257 (50%), Gaps = 11/257 (4%)
Query: 2 NFTGKVILVTGASSGIGAATALHLAKLDAKLAIT-GRNVEQLDKVSESCQSVSKNKPLVI 60
+ GKV LVTGA GIG A+ L + K+ + + E ++V + + +
Sbjct: 26 SLEGKVALVTGAGRGIGREMAMELGRRGCKVIVNYANSTESAEEVVAAIKKNGS-DAACV 84
Query: 61 QADLTSEEDTKRIIDTVVKHYQKLNVLVNNAGILEAGSIENTSLEQYDKIMNVNVRSIYH 120
+A++ ED R+ + VK + KL+++ +N+G++ G +++ + E++D++ +N R +
Sbjct: 85 KANVGVVEDIVRMFEEAVKIFGKLDIVCSNSGVVSFGHVKDVTPEEFDRVFTINTRGQFF 144
Query: 121 LTMLAVPHLISTKGNIVNVSSVNGLR-SFPGVLAYCVSKAAVDQFTSCTALELASKGVRV 179
+ A HL G ++ + S+ G + P Y SK A++ F C A+++A K + V
Sbjct: 145 VAREAYKHL-EIGGRLILMGSITGQAKAVPKHAVYSGSKGAIETFARCMAIDMADKKITV 203
Query: 180 NSVNPGVTLTNLHKNSGIDQQAYQNFLERSKETH-------ALGRVGNPEEVAKAIAFLA 232
N V PG T+++ + L + L RVG P ++A+ + FLA
Sbjct: 204 NVVAPGGIKTDMYHAVCREYIPNGENLSNEEVDEYAAVQWSPLRRVGLPIDIARVVCFLA 263
Query: 233 SDDASFTTGEHLTVDGG 249
S+D + TG+ + +DGG
Sbjct: 264 SNDGGWVTGKVIGIDGG 280
>1ja9_A 4HNR, 1,3,6,8-tetrahydroxynaphthalene reductase;
protein-NADPH-active site inhibitor complex,
oxidoreductase, chain dehydrogenase; HET: NDP PYQ; 1.50A
{Magnaporthe grisea} SCOP: c.2.1.2
Length = 274
Score = 241 bits (617), Expect = 4e-80
Identities = 63/255 (24%), Positives = 119/255 (46%), Gaps = 11/255 (4%)
Query: 4 TGKVILVTGASSGIGAATALHLAKLDAKLAIT-GRNVEQLDKVSESCQSVSKNKPLVIQA 62
GKV L TGA GIG A+ L + A + + G + + ++V + + + + IQA
Sbjct: 20 AGKVALTTGAGRGIGRGIAIELGRRGASVVVNYGSSSKAAEEVVAELKKLGA-QGVAIQA 78
Query: 63 DLTSEEDTKRIIDTVVKHYQKLNVLVNNAGILEAGSIENTSLEQYDKIMNVNVRSIYHLT 122
D++ + + D V H+ L+ +++N+G+ + E +DK+ N+N R + +
Sbjct: 79 DISKPSEVVALFDKAVSHFGGLDFVMSNSGMEVWCDELEVTQELFDKVFNLNTRGQFFVA 138
Query: 123 MLAVPHLISTKGNIVNVSSVNGLRS-FPGVLAYCVSKAAVDQFTSCTALELASKGVRVNS 181
+ H G I+ SS+ + + P Y SKAAV+ F A++ +KGV VN
Sbjct: 139 QQGLKHC-RRGGRIILTSSIAAVMTGIPNHALYAGSKAAVEGFCRAFAVDCGAKGVTVNC 197
Query: 182 VNPGVTLTNLHKNSGIDQQAYQN-------FLERSKETHALGRVGNPEEVAKAIAFLASD 234
+ PG T++ + E + L R+G P ++ +A++ L +
Sbjct: 198 IAPGGVKTDMFDENSWHYAPGGYKGMPQEKIDEGLANMNPLKRIGYPADIGRAVSALCQE 257
Query: 235 DASFTTGEHLTVDGG 249
++ + G+ + + GG
Sbjct: 258 ESEWINGQVIKLTGG 272
>4e3z_A Putative oxidoreductase protein; PSI-biology, structural genomics,
protein structure initiati nysgrc,oxidoreductase; 2.00A
{Rhizobium etli}
Length = 272
Score = 241 bits (617), Expect = 4e-80
Identities = 86/254 (33%), Positives = 129/254 (50%), Gaps = 13/254 (5%)
Query: 4 TGKVILVTGASSGIGAATALHLAKLDAKLAIT-GRNVEQLDKVSESCQSVSKNKPLVIQA 62
V+LVTG S GIGAA A+ ++ + N E D V + S + + I
Sbjct: 25 DTPVVLVTGGSRGIGAAVCRLAARQGWRVGVNYAANREAADAVVAAITE-SGGEAVAIPG 83
Query: 63 DLTSEEDTKRIIDTVVKHYQKLNVLVNNAGILE-AGSIENTSLEQYDKIMNVNVRSIYHL 121
D+ + D + V + + +L+ LVNNAGI++ ++ S+E+ ++++ VNV
Sbjct: 84 DVGNAADIAAMFSAVDRQFGRLDGLVNNAGIVDYPQRVDEMSVERIERMLRVNVTGSILC 143
Query: 122 TMLAVPHLISTK----GNIVNVSSVNGLRSFPGVLA-YCVSKAAVDQFTSCTALELASKG 176
AV + G IVNVSS+ + Y SKAA+D FT A E+A++G
Sbjct: 144 AAEAVRRMSRLYSGQGGAIVNVSSMAAILGSATQYVDYAASKAAIDTFTIGLAREVAAEG 203
Query: 177 VRVNSVNPGVTLTNLHKNSGIDQQAYQNFLERSKETHALGRVGNPEEVAKAIAFLASDDA 236
+RVN+V PG+ T+LH + G+ +A + + R G PEEVA AI +L S A
Sbjct: 204 IRVNAVRPGIIETDLHASGGLPDRA-----REMAPSVPMQRAGMPEEVADAILYLLSPSA 258
Query: 237 SFTTGEHLTVDGGR 250
S+ TG L V GGR
Sbjct: 259 SYVTGSILNVSGGR 272
>2fwm_X 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase; enterobactin,
rossman fold, chorismate metabolism, short-CHA
oxidoreductase, tetramer; 2.00A {Escherichia coli}
Length = 250
Score = 240 bits (614), Expect = 4e-80
Identities = 82/254 (32%), Positives = 119/254 (46%), Gaps = 16/254 (6%)
Query: 1 MNFTGKVILVTGASSGIGAATALHLAKLDAKLAITGRNVEQLDKVSESCQSVSKNKPLVI 60
M+F+GK + VTGA GIG ATAL + AK+ + Q
Sbjct: 3 MDFSGKNVWVTGAGKGIGYATALAFVEAGAKVTGFDQAFTQEQY-----------PFATE 51
Query: 61 QADLTSEEDTKRIIDTVVKHYQKLNVLVNNAGILEAGSIENTSLEQYDKIMNVNVRSIYH 120
D+ ++ ++ ++L+ LVN AGIL G+ + S E + + VNV ++
Sbjct: 52 VMDVADAAQVAQVCQRLLAETERLDALVNAAGILRMGATDQLSKEDWQQTFAVNVGGAFN 111
Query: 121 LTMLAVPHLISTK-GNIVNVSSVNGLRSFPGVLAYCVSKAAVDQFTSCTALELASKGVRV 179
L + + G IV V+S G+ AY SKAA+ LELA GVR
Sbjct: 112 LFQQTMNQFRRQRGGAIVTVASDAAHTPRIGMSAYGASKAALKSLALSVGLELAGSGVRC 171
Query: 180 NSVNPGVTLT----NLHKNSGIDQQAYQNFLERSKETHALGRVGNPEEVAKAIAFLASDD 235
N V+PG T T L + ++Q + F E+ K LG++ P+E+A I FLASD
Sbjct: 172 NVVSPGSTDTDMQRTLWVSDDAEEQRIRGFGEQFKLGIPLGKIARPQEIANTILFLASDL 231
Query: 236 ASFTTGEHLTVDGG 249
AS T + + VDGG
Sbjct: 232 ASHITLQDIVVDGG 245
>3gaf_A 7-alpha-hydroxysteroid dehydrogenase; seattle structural genomics
center for infectious disease, ssgcid, oxidoreductase,
structural genomics; 2.20A {Brucella melitensis}
Length = 256
Score = 240 bits (614), Expect = 6e-80
Identities = 72/250 (28%), Positives = 126/250 (50%), Gaps = 8/250 (3%)
Query: 1 MNFTGKVILVTGASSGIGAATALHLAKLDAKLAITGRNVEQLDKVSESCQSVSKNKPLVI 60
+ V +VTGA++GIG A A AK A + +T E + V+ + + K + +
Sbjct: 8 FHLNDAVAIVTGAAAGIGRAIAGTFAKAGASVVVTDLKSEGAEAVAAAIRQAG-GKAIGL 66
Query: 61 QADLTSEEDTKRIIDTVVKHYQKLNVLVNNAGILEAGSIENTSLEQYDKIMNVNVRSIYH 120
+ ++T E+ + +I + + K+ VLVNNAG + + ++ +N+ S++
Sbjct: 67 ECNVTDEQHREAVIKAALDQFGKITVLVNNAGGGGPKPFD-MPMSDFEWAFKLNLFSLFR 125
Query: 121 LTMLAVPHLISTK-GNIVNVSSVNGLRSFPGVLAYCVSKAAVDQFTSCTALELASKGVRV 179
L+ LA PH+ G I+N+SS+ G + + +Y SKAAV+ T A ++ G+RV
Sbjct: 126 LSQLAAPHMQKAGGGAILNISSMAGENTNVRMASYGSSKAAVNHLTRNIAFDVGPMGIRV 185
Query: 180 NSVNPGVTLTNLHKNSGIDQQAYQNFLERSKETHALGRVGNPEEVAKAIAFLASDDASFT 239
N++ PG T+ + + LGR+G +++A A FL S A++
Sbjct: 186 NAIAPGAIKTDALATVLTPEI-----ERAMLKHTPLGRLGEAQDIANAALFLCSPAAAWI 240
Query: 240 TGEHLTVDGG 249
+G+ LTV GG
Sbjct: 241 SGQVLTVSGG 250
>3imf_A Short chain dehydrogenase; structural genomics, infectious D center
for structural genomics of infectious diseases,
oxidoreductase, csgid; HET: MSE; 1.99A {Bacillus
anthracis str}
Length = 257
Score = 238 bits (610), Expect = 3e-79
Identities = 71/253 (28%), Positives = 134/253 (52%), Gaps = 9/253 (3%)
Query: 3 FTGKVILVTGASSGIGAATALHLAKLDAKLAITGRNVEQLDKVSESCQSVSKNKPLVIQA 62
KV+++TG SSG+G A AK A++ ITGR E+L++ + + L +Q
Sbjct: 4 MKEKVVIITGGSSGMGKGMATRFAKEGARVVITGRTKEKLEEAKLEIEQ-FPGQILTVQM 62
Query: 63 DLTSEEDTKRIIDTVVKHYQKLNVLVNNAGILEAGSIENTSLEQYDKIMNVNVRSIYHLT 122
D+ + +D +++I+ + + + ++++L+NNA E+ S+ ++ ++N+ + ++ +
Sbjct: 63 DVRNTDDIQKMIEQIDEKFGRIDILINNAAGNFICPAEDLSVNGWNSVINIVLNGTFYCS 122
Query: 123 MLAVPHLIS--TKGNIVNVSSVNGLRSFPGVLAYCVSKAAVDQFTSCTALELASK-GVRV 179
+ I KGNI+N+ + + PGV+ +KA V T A+E K G+RV
Sbjct: 123 QAIGKYWIEKGIKGNIINMVATYAWDAGPGVIHSAAAKAGVLAMTKTLAVEWGRKYGIRV 182
Query: 180 NSVNPGVTLTNL-HKNSGIDQQAYQNFLERSKETHALGRVGNPEEVAKAIAFLASDDASF 238
N++ PG I ++ + ++ LGR+G PEE+A +L SD+A++
Sbjct: 183 NAIAPGPIERTGGADKLWISEEMAKRTIQSV----PLGRLGTPEEIAGLAYYLCSDEAAY 238
Query: 239 TTGEHLTVDGGRH 251
G +T+DGG+H
Sbjct: 239 INGTCMTMDGGQH 251
>1w6u_A 2,4-dienoyl-COA reductase, mitochondrial precursor; short chain
dehydrogenase, beta- oxidation, NADP, oxidoreductase;
HET: HXC NAP; 1.75A {Homo sapiens} SCOP: c.2.1.2 PDB:
1w73_A* 1w8d_A*
Length = 302
Score = 239 bits (612), Expect = 4e-79
Identities = 62/255 (24%), Positives = 107/255 (41%), Gaps = 7/255 (2%)
Query: 2 NFTGKVILVTGASSGIGAATALHLAKLDAKLAITGRNVEQLDKVSESCQSVSKNKPLVIQ 61
+F GKV +TG +G+G L+ L A+ I R ++ L +E S + NK IQ
Sbjct: 23 SFQGKVAFITGGGTGLGKGMTTLLSSLGAQCVIASRKMDVLKATAEQISSQTGNKVHAIQ 82
Query: 62 ADLTSEEDTKRIIDTVVKHYQKLNVLVNNAGILEAGSIENTSLEQYDKIMNVNVRSIYHL 121
D+ + + + ++K N+++NNA E S + I ++ + +
Sbjct: 83 CDVRDPDMVQNTVSELIKVAGHPNIVINNAAGNFISPTERLSPNAWKTITDIVLNGTAFV 142
Query: 122 TMLAVPHLISTK--GNIVNVSSVNGLRSFPGVLAYCVSKAAVDQFTSCTALELASKGVRV 179
T+ LI + ++++++ V+ +KA V+ + A E G+R
Sbjct: 143 TLEIGKQLIKAQKGAAFLSITTIYAETGSGFVVPSASAKAGVEAMSKSLAAEWGKYGMRF 202
Query: 180 NSVNPGVTLTNL-HKNSGIDQQAYQNFLERSKETHALGRVGNPEEVAKAIAFLASDDASF 238
N + PG T + + R GR+G EE+A AFL SD AS+
Sbjct: 203 NVIQPGPIKTKGAFSRLDPTGTFEKEMIGRI----PCGRLGTVEELANLAAFLCSDYASW 258
Query: 239 TTGEHLTVDGGRHAM 253
G + DGG +
Sbjct: 259 INGAVIKFDGGEEVL 273
>1zmo_A Halohydrin dehalogenase; haloalcohol dehalogenase, short- chain
dehydrogenase/reductase family, lyase; 2.00A
{Arthrobacter SP}
Length = 244
Score = 237 bits (606), Expect = 6e-79
Identities = 47/249 (18%), Positives = 94/249 (37%), Gaps = 14/249 (5%)
Query: 6 KVILVTGASSGIGAATALHLAKLDAKLAITGRNVEQL-DKVSESCQSVSKNKPLVIQADL 64
+ LVT A G A L + + + ++ ++
Sbjct: 2 VIALVTHARHFAGPAAVEALTQDGYTVVCHDASFADAAERQRFESENP--------GTIA 53
Query: 65 TSEEDTKRIIDTVVKHYQKLNVLVNNAGILEAGS---IENTSLEQYDKIMNVNVRSIYHL 121
+E+ +R++D ++H + ++ +V+N I + +E TS ++ L
Sbjct: 54 LAEQKPERLVDATLQHGEAIDTIVSNDYIPRPMNRLPLEGTSEADIRQMFEALSIFPILL 113
Query: 122 TMLAVPHLISTK-GNIVNVSSVNGLRSFPGVLAYCVSKAAVDQFTSCTALELASKGVRVN 180
A+ L + +++ ++S G + Y ++AA A L+ G+ +
Sbjct: 114 LQSAIAPLRAAGGASVIFITSSVGKKPLAYNPLYGPARAATVALVESAAKTLSRDGILLY 173
Query: 181 SVNPGVTLTNLHKNSGIDQQAYQNFLERSKETHALGRVGNPEEVAKAIAFLASDDASFTT 240
++ P + + D + ER LGR+G P+E+ I FLAS A+
Sbjct: 174 AIGPNFFNNPTYFPTS-DWENNPELRERVDRDVPLGRLGRPDEMGALITFLASRRAAPIV 232
Query: 241 GEHLTVDGG 249
G+ GG
Sbjct: 233 GQFFAFTGG 241
>3a28_C L-2.3-butanediol dehydrogenase; chiral substrate recognition,
oxidoreductase; HET: NAD; 2.00A {Brevibacterium
saccharolyticum}
Length = 258
Score = 237 bits (606), Expect = 1e-78
Identities = 77/254 (30%), Positives = 126/254 (49%), Gaps = 10/254 (3%)
Query: 5 GKVILVTGASSGIGAATALHLAKLDAKLAIT--GRNVEQLDKVSESCQSVSKNKPLVIQA 62
KV +VTG + GIG + LA +A+ + EQ + + ++ K + +
Sbjct: 2 SKVAMVTGGAQGIGRGISEKLAADGFDIAVADLPQQEEQAAETIKLIEAAD-QKAVFVGL 60
Query: 63 DLTSEEDTKRIIDTVVKHYQKLNVLVNNAGILEAGSIENTSLEQYDKIMNVNVRSIYHLT 122
D+T + + ID + +VLVNNAGI + + + E +I +VNV S++
Sbjct: 61 DVTDKANFDSAIDEAAEKLGGFDVLVNNAGIAQIKPLLEVTEEDLKQIYSVNVFSVFFGI 120
Query: 123 MLAVPHLIS--TKGNIVNVSSVNGLRSFPGVLAYCVSKAAVDQFTSCTALELASKGVRVN 180
A KG I+N +S+ ++ FP + AY +K AV T A ELA KG VN
Sbjct: 121 QAASRKFDELGVKGKIINAASIAAIQGFPILSAYSTTKFAVRGLTQAAAQELAPKGHTVN 180
Query: 181 SVNPGVTLTNL-----HKNSGIDQQAYQNFLERSKETHALGRVGNPEEVAKAIAFLASDD 235
+ PG+ T + + S I+ + + + ALGR PE+VA ++FLAS++
Sbjct: 181 AYAPGIVGTGMWEQIDAELSKINGKPIGENFKEYSSSIALGRPSVPEDVAGLVSFLASEN 240
Query: 236 ASFTTGEHLTVDGG 249
+++ TG+ + VDGG
Sbjct: 241 SNYVTGQVMLVDGG 254
>1geg_A Acetoin reductase; SDR family, oxidoreductase; HET: GLC NAD; 1.70A
{Klebsiella pneumoniae} SCOP: c.2.1.2
Length = 256
Score = 236 bits (605), Expect = 2e-78
Identities = 76/251 (30%), Positives = 114/251 (45%), Gaps = 8/251 (3%)
Query: 6 KVILVTGASSGIGAATALHLAKLDAKLAITGRNVEQLDKVSESCQSVSKNKPLVIQADLT 65
KV LVTGA GIG A AL L K +AI N V+ + ++ D++
Sbjct: 3 KVALVTGAGQGIGKAIALRLVKDGFAVAIADYNDATAKAVASEINQAG-GHAVAVKVDVS 61
Query: 66 SEEDTKRIIDTVVKHYQKLNVLVNNAGILEAGSIENTSLEQYDKIMNVNVRSIYHLTMLA 125
+ ++ K +V+VNNAG+ + IE+ + E DK+ N+NV+ + A
Sbjct: 62 DRDQVFAAVEQARKTLGGFDVIVNNAGVAPSTPIESITPEIVDKVYNINVKGVIWGIQAA 121
Query: 126 VPHLIS--TKGNIVNVSSVNGLRSFPGVLAYCVSKAAVDQFTSCTALELASKGVRVNSVN 183
V G I+N S G P + Y SK AV T A +LA G+ VN
Sbjct: 122 VEAFKKEGHGGKIINACSQAGHVGNPELAVYSSSKFAVRGLTQTAARDLAPLGITVNGYC 181
Query: 184 PGVTLTNL-----HKNSGIDQQAYQNFLERSKETHALGRVGNPEEVAKAIAFLASDDASF 238
PG+ T + + S + + LGR+ PE+VA +++LAS D+ +
Sbjct: 182 PGIVKTPMWAEIDRQVSEAAGKPLGYGTAEFAKRITLGRLSEPEDVAACVSYLASPDSDY 241
Query: 239 TTGEHLTVDGG 249
TG+ L +DGG
Sbjct: 242 MTGQSLLIDGG 252
>3ksu_A 3-oxoacyl-acyl carrier protein reductase; structural genomics,
PSI-2, dehydrogenase, protein structure initiative;
2.30A {Oenococcus oeni psu-1}
Length = 262
Score = 236 bits (604), Expect = 3e-78
Identities = 54/251 (21%), Positives = 110/251 (43%), Gaps = 11/251 (4%)
Query: 2 NFTGKVILVTGASSGIGAATALHLAKLDAKLAIT---GRNVEQLDKVSESCQSVSKNKPL 58
+ KVI++ G +GA TA A L + ++ + +K+ + + K
Sbjct: 8 DLKNKVIVIAGGIKNLGALTAKTFALESVNLVLHYHQAKDSDTANKLKDELEDQGA-KVA 66
Query: 59 VIQADLTSEEDTKRIIDTVVKHYQKLNVLVNNAGILEAGSIENTSLEQYDKIMNVNVRSI 118
+ Q+DL++EE+ ++ D K + K+++ +N G + I TS ++D + +N +
Sbjct: 67 LYQSDLSNEEEVAKLFDFAEKEFGKVDIAINTVGKVLKKPIVETSEAEFDAMDTINNKVA 126
Query: 119 YHLTMLAVPHLISTKGNIVNVSSVNGLRSFPGVLAYCVSKAAVDQFTSCTALELASKGVR 178
Y A H+ + G+I+ +++ Y +KA V+ +T + EL + +
Sbjct: 127 YFFIKQAAKHM-NPNGHIITIATSLLAAYTGFYSTYAGNKAPVEHYTRAASKELMKQQIS 185
Query: 179 VNSVNPGVTLTNLHKNSGIDQQAYQNFLERSKETHALGRVGNPEEVAKAIAFLASDDASF 238
VN++ PG T+ + K ++ E++A I FL + D +
Sbjct: 186 VNAIAPGPMDTSFFYGQETKES-----TAFHKSQAMGNQLTKIEDIAPIIKFLTT-DGWW 239
Query: 239 TTGEHLTVDGG 249
G+ + +GG
Sbjct: 240 INGQTIFANGG 250
>3v2h_A D-beta-hydroxybutyrate dehydrogenase; structural genomics,
PSI-biology, NEW YORK structural genomi research
consortium, nysgrc; 3.00A {Sinorhizobium meliloti}
Length = 281
Score = 236 bits (604), Expect = 4e-78
Identities = 82/260 (31%), Positives = 131/260 (50%), Gaps = 8/260 (3%)
Query: 1 MNFTGKVILVTGASSGIGAATALHLAKLDAKLAITGRN-VEQLDKVSESCQSVSKNKPLV 59
+ K ++TG++SGIG A A LAK A + + G +++ V++ +S L
Sbjct: 21 QSMMTKTAVITGSTSGIGLAIARTLAKAGANIVLNGFGAPDEIRTVTDEVAGLSSGTVLH 80
Query: 60 IQADLTSEEDTKRIIDTVVKHYQKLNVLVNNAGILEAGSIENTSLEQYDKIMNVNVRSIY 119
AD+T + ++ V + ++LVNNAG+ IE+ +EQ+D+I+ VN+ S +
Sbjct: 81 HPADMTKPSEIADMMAMVADRFGGADILVNNAGVQFVEKIEDFPVEQWDRIIAVNLSSSF 140
Query: 120 HLTMLAVPHLISTK-GNIVNVSSVNGLRSFPGVLAYCVSKAAVDQFTSCTALELASKGVR 178
H A+P + G I+N++S +GL + P AY +K + T ALE+A GV
Sbjct: 141 HTIRGAIPPMKKKGWGRIINIASAHGLVASPFKSAYVAAKHGIMGLTKTVALEVAESGVT 200
Query: 179 VNSVNPGVTLTNLHKNSGIDQQAYQNFLERSK------ETHALGRVGNPEEVAKAIAFLA 232
VNS+ PG LT L + DQ + E + + E+VA +LA
Sbjct: 201 VNSICPGYVLTPLVEKQIPDQARTRGITEEQVINEVMLKGQPTKKFITVEQVASLALYLA 260
Query: 233 SDDASFTTGEHLTVDGGRHA 252
DDA+ TG H+++DGG A
Sbjct: 261 GDDAAQITGTHVSMDGGWTA 280
>3sc4_A Short chain dehydrogenase (A0QTM2 homolog); ssgcid, NIH, niaid,
SBRI, UW, emerald biostructures, structu genomics; 2.50A
{Mycobacterium thermoresistibile}
Length = 285
Score = 236 bits (603), Expect = 6e-78
Identities = 61/260 (23%), Positives = 110/260 (42%), Gaps = 20/260 (7%)
Query: 1 MNFTGKVILVTGASSGIGAATALHLAKLDAKLAITGRNVEQLDKVSESCQSVSKN----- 55
M+ GK + ++G S GIG A A +A A +A+ ++ E K+ + + +K
Sbjct: 5 MSLRGKTMFISGGSRGIGLAIAKRVAADGANVALVAKSAEPHPKLPGTIYTAAKEIEEAG 64
Query: 56 -KPLVIQADLTSEEDTKRIIDTVVKHYQKLNVLVNNAGILEAGSIENTSLEQYDKIMNVN 114
+ L I D+ + + V+ + +++ VNNA + GSIE L+++D + +
Sbjct: 65 GQALPIVGDIRDGDAVAAAVAKTVEQFGGIDICVNNASAINLGSIEEVPLKRFDLMNGIQ 124
Query: 115 VRSIYHLTMLAVPHLISTK-GNIVNVSSVNGLRS-FPGVLAYCVSKAAVDQFTSCTALEL 172
VR Y ++ +PH+ +I+ +S L + Y ++K + A EL
Sbjct: 125 VRGTYAVSQSCIPHMKGRDNPHILTLSPPIRLEPKWLRPTPYMMAKYGMTLCALGIAEEL 184
Query: 173 ASKGVRVNSVNPGVTLTNLHKNSGIDQQAYQNFLERSKETHALGRVGNPEEVAKAIAFLA 232
G+ N++ P T + A QN L A+ R PE A A +
Sbjct: 185 RDAGIASNTLWPRTT---------VATAAVQNLLG---GDEAMARSRKPEVYADAAYVVL 232
Query: 233 SDDASFTTGEHLTVDGGRHA 252
+ +S+T L D +
Sbjct: 233 NKPSSYTGNTLLCEDVLLES 252
>3e03_A Short chain dehydrogenase; structural genomics, PSI-2, protein
structure initiative, NEW YORK structural genomix
research consortium; 1.69A {Xanthomonas campestris PV}
Length = 274
Score = 235 bits (602), Expect = 7e-78
Identities = 56/261 (21%), Positives = 107/261 (40%), Gaps = 23/261 (8%)
Query: 1 MNFTGKVILVTGASSGIGAATALHLAKLDAKLAITGRNVEQLDKVSESCQSVSKN----- 55
+ +GK + +TGAS GIG A AL A+ A +AI ++ K+ + S +
Sbjct: 2 LTLSGKTLFITGASRGIGLAIALRAARDGANVAIAAKSAVANPKLPGTIHSAAAAVNAAG 61
Query: 56 -KPLVIQADLTSEEDTKRIIDTVVKHYQKLNVLVNNAGILEAGSIENTSLEQYDKIMNVN 114
+ L ++ D+ E+ + + V + +++LVNNA + +T ++++D + VN
Sbjct: 62 GQGLALKCDIREEDQVRAAVAATVDTFGGIDILVNNASAIWLRGTLDTPMKRFDLMQQVN 121
Query: 115 VRSIYHLTMLAVPHLI-STKGNIVNVSSVNGLRS--FPGVLAYCVSKAAVDQFTSCTALE 171
R + +PHL+ + +I+ ++ L + Y ++K + T A E
Sbjct: 122 ARGSFVCAQACLPHLLQAPNPHILTLAPPPSLNPAWWGAHTGYTLAKMGMSLVTLGLAAE 181
Query: 172 LASKGVRVNSVNPGVTLTNLHKNSGIDQQAYQNFLERSKETHALGRVGNPEEVAKAIAFL 231
+GV +N++ P I A PE +A A +
Sbjct: 182 FGPQGVAINALWPRTV---------IATDAINMLPG-----VDAAACRRPEIMADAAHAV 227
Query: 232 ASDDASFTTGEHLTVDGGRHA 252
+ +A+ G+ L D
Sbjct: 228 LTREAAGFHGQFLIDDEVLAQ 248
>1yxm_A Pecra, peroxisomal trans 2-enoyl COA reductase; perioxisomes, fatty
acid synthesis, short-chain dehydrogenases/reductases,
structural genomics; HET: ADE; 1.90A {Homo sapiens}
SCOP: c.2.1.2
Length = 303
Score = 235 bits (602), Expect = 2e-77
Identities = 72/254 (28%), Positives = 120/254 (47%), Gaps = 8/254 (3%)
Query: 3 FTGKVILVTGASSGIGAATALHLAKLDAKLAITGRNVEQLDKV----SESCQSVSKNKPL 58
G+V +VTG ++GIG A L +L + + I R +E+L + + + +
Sbjct: 16 LQGQVAIVTGGATGIGKAIVKELLELGSNVVIASRKLERLKSAADELQANLPPTKQARVI 75
Query: 59 VIQADLTSEEDTKRIIDTVVKHYQKLNVLVNNAGILEAGSIENTSLEQYDKIMNVNVRSI 118
IQ ++ +EE+ ++ + + + K+N LVNN G E+ S + + ++ N+
Sbjct: 76 PIQCNIRNEEEVNNLVKSTLDTFGKINFLVNNGGGQFLSPAEHISSKGWHAVLETNLTGT 135
Query: 119 YHLTMLAVPHLISTK-GNIVNVSSVNGLRSFPGVLAYCVSKAAVDQFTSCTALELASKGV 177
+++ + G+IVN+ FP + ++A V T ALE A G+
Sbjct: 136 FYMCKAVYSSWMKEHGGSIVNIIVP-TKAGFPLAVHSGAARAGVYNLTKSLALEWACSGI 194
Query: 178 RVNSVNPGVTLTNLHKNSGIDQQAYQNFLERSKETHALGRVGNPEEVAKAIAFLASDDAS 237
R+N V PGV + Q+F E S + R+G PEEV+ + FL S AS
Sbjct: 195 RINCVAPGVIYSQT--AVENYGSWGQSFFEGSFQKIPAKRIGVPEEVSSVVCFLLSPAAS 252
Query: 238 FTTGEHLTVDGGRH 251
F TG+ + VDGGR
Sbjct: 253 FITGQSVDVDGGRS 266
>3icc_A Putative 3-oxoacyl-(acyl carrier protein) reducta; structural
genomics, putative 3-oxoacyl-(acyl carrier protei
reductase, oxidoreductase; HET: NAP MES; 1.87A {Bacillus
anthracis str}
Length = 255
Score = 233 bits (598), Expect = 2e-77
Identities = 81/253 (32%), Positives = 129/253 (50%), Gaps = 13/253 (5%)
Query: 4 TGKVILVTGASSGIGAATALHLAKLDAKLAIT-GRNVEQLDKVSESCQSVSKNKPLVIQA 62
GKV LVTGAS GIG A A LA A +AI G E+ ++ QS + I A
Sbjct: 6 KGKVALVTGASRGIGRAIAKRLANDGALVAIHYGNRKEEAEETVYEIQS-NGGSAFSIGA 64
Query: 63 DLTSEEDTKRIIDTVVKHYQ------KLNVLVNNAGILEAGSIENTSLEQYDKIMNVNVR 116
+L S + + ++ Q K ++L+NNAGI IE T+ + +D++++VN +
Sbjct: 65 NLESLHGVEALYSSLDNELQNRTGSTKFDILINNAGIGPGAFIEETTEQFFDRMVSVNAK 124
Query: 117 SIYHLTMLAVPHLISTKGNIVNVSSVNGLRSFPGVLAYCVSKAAVDQFTSCTALELASKG 176
+ + + A+ L I+N+SS S P +AY ++K A++ T A +L ++G
Sbjct: 125 APFFIIQQALSRL-RDNSRIINISSAATRISLPDFIAYSMTKGAINTMTFTLAKQLGARG 183
Query: 177 VRVNSVNPGVTLTNLHKNSGIDQQAYQNFLERSKETHALGRVGNPEEVAKAIAFLASDDA 236
+ VN++ PG T+++ D Q S A R+G E++A AFLAS D+
Sbjct: 184 ITVNAILPGFVKTDMNAELLSDPMMKQYATTIS----AFNRLGEVEDIADTAAFLASPDS 239
Query: 237 SFTTGEHLTVDGG 249
+ TG+ + V GG
Sbjct: 240 RWVTGQLIDVSGG 252
>3gem_A Short chain dehydrogenase; structural genomics, APC65077,
oxidoreductase, PSI-2, protein structure initiative;
1.83A {Pseudomonas syringae PV}
Length = 260
Score = 234 bits (598), Expect = 2e-77
Identities = 56/252 (22%), Positives = 109/252 (43%), Gaps = 19/252 (7%)
Query: 1 MNFTGKVILVTGASSGIGAATALHLAKLDAKLAITGRNVEQLDKVSESCQSVSKNKPLVI 60
M + IL+TGAS +G AL L + ++ I+ R S + + + +
Sbjct: 23 MTLSSAPILITGASQRVGLHCALRLLEHGHRVIISYRTEH------ASVTELRQAGAVAL 76
Query: 61 QADLTSEEDTKRIIDTVVKHYQKLNVLVNNAGILEAGSIENTSLEQYDKIMNVNVRSIYH 120
D + E ID + L +V+NA A + + + ++ +V++ + Y
Sbjct: 77 YGDFSCETGIMAFIDLLKTQTSSLRAVVHNASEWLAETPG-EEADNFTRMFSVHMLAPYL 135
Query: 121 LTMLAVPHLISTK-GNIVNVSSVNGLRSFPGVLAYCVSKAAVDQFTSCTALELASKGVRV 179
+ + P L +++ +IV++S + +AYC +KA ++ T A A V+V
Sbjct: 136 INLHCEPLLTASEVADIVHISDDVTRKGSSKHIAYCATKAGLESLTLSFAARFAPL-VKV 194
Query: 180 NSVNPGVTLTNLHKNSGIDQQAYQNFLERSKETHALGRVGNPEEVAKAIAFLASDDASFT 239
N + P + + ++ + ALG E + +++ +L +++
Sbjct: 195 NGIAPALLMFQPKDDAAY--------RANALAKSALGIEPGAEVIYQSLRYLLD--STYV 244
Query: 240 TGEHLTVDGGRH 251
TG LTV+GGRH
Sbjct: 245 TGTTLTVNGGRH 256
>4fc7_A Peroxisomal 2,4-dienoyl-COA reductase; SDR/rossmann fold,
peroxisomal beta-oxidation, oxidoreductas; HET: NAP COA;
1.84A {Homo sapiens} PDB: 4fc6_A*
Length = 277
Score = 234 bits (599), Expect = 2e-77
Identities = 62/255 (24%), Positives = 112/255 (43%), Gaps = 6/255 (2%)
Query: 3 FTGKVILVTGASSGIGAATALHLAKLDAKLAITGRNVEQLDKVSESCQSVSKNKPLVIQA 62
KV +TG SGIG A + I R++ ++ + + + L +
Sbjct: 25 LRDKVAFITGGGSGIGFRIAEIFMRHGCHTVIASRSLPRVLTAARKLAGATGRRCLPLSM 84
Query: 63 DLTSEEDTKRIIDTVVKHYQKLNVLVNNAGILEAGSIENTSLEQYDKIMNVNVRSIYHLT 122
D+ + +D +K + ++++L+N A S + +M+++ ++++
Sbjct: 85 DVRAPPAVMAAVDQALKEFGRIDILINCAAGNFLCPAGALSFNAFKTVMDIDTSGTFNVS 144
Query: 123 MLAVPHLISTK-GNIVNVSSVNGLRSFPGVLAYCVSKAAVDQFTSCTALELASKGVRVNS 181
+ G IVN+++ G R + +KAAVD T A+E + +RVNS
Sbjct: 145 RVLYEKFFRDHGGVIVNITATLGNRGQALQVHAGSAKAAVDAMTRHLAVEWGPQNIRVNS 204
Query: 182 VNPG-VTLTNLHKNSGIDQQAYQNFLERSKETHALGRVGNPEEVAKAIAFLASDDASFTT 240
+ PG ++ T + G Q + + S L R+GN E+A ++ +LAS AS+ T
Sbjct: 205 LAPGPISGTEGLRRLGGPQASLSTKVTAS----PLQRLGNKTEIAHSVLYLASPLASYVT 260
Query: 241 GEHLTVDGGRHAMCP 255
G L DGG P
Sbjct: 261 GAVLVADGGAWLTFP 275
>3un1_A Probable oxidoreductase; structural genomics, PSI-biology, NEW YORK
structural genomi research consortium, nysgrc; 2.45A
{Sinorhizobium meliloti}
Length = 260
Score = 232 bits (594), Expect = 8e-77
Identities = 70/255 (27%), Positives = 122/255 (47%), Gaps = 24/255 (9%)
Query: 1 MNFTGKVILVTGASSGIGAATALHLAKLDAKLAITGRNVEQLDKVSESCQSVSKNKPLVI 60
M KV+++TGAS GIGA + ++ T R+++ +
Sbjct: 24 MRNQQKVVVITGASQGIGAGLVRAYRDRNYRVVATSRSIKPSADP----------DIHTV 73
Query: 61 QADLTSEEDTKRIIDTVVKHYQKLNVLVNNAGILEAGSIENTSLEQYDKIMNVNVRSIYH 120
D++ E RI+ ++ + +++ LVNNAG+ A + E YD + VNV +H
Sbjct: 74 AGDISKPETADRIVREGIERFGRIDSLVNNAGVFLAKPFVEMTQEDYDHNLGVNVAGFFH 133
Query: 121 LTMLAVPHLISTK-GNIVNVSSVNGLRSFPGV--LAYCVSKAAVDQFTSCTALELASKGV 177
+T A ++ G+IV++++ + G+ ++K ++ T A+E + GV
Sbjct: 134 ITQRAAAEMLKQGSGHIVSITTSLVDQPMVGMPSALASLTKGGLNAVTRSLAMEFSRSGV 193
Query: 178 RVNSVNPGVTLTNLHKNSGIDQQAYQNFLERSKETHALGRVGNPEEVAKAIAFLASDDAS 237
RVN+V+PGV T +H + + H +GR+G +V A+ +L + A
Sbjct: 194 RVNAVSPGVIKTPMH-----PAETHSTLAGL----HPVGRMGEIRDVVDAVLYL--EHAG 242
Query: 238 FTTGEHLTVDGGRHA 252
F TGE L VDGG++A
Sbjct: 243 FITGEILHVDGGQNA 257
>3qiv_A Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR protein]
reductase; structural genomics; 2.25A {Mycobacterium
avium subsp}
Length = 253
Score = 230 bits (590), Expect = 2e-76
Identities = 67/254 (26%), Positives = 111/254 (43%), Gaps = 13/254 (5%)
Query: 1 MNFTGKVILVTGASSGIGAATALHLAKLDAKLAITGRNVEQLDKVSESCQSVSKNKPLVI 60
M F KV +VTG+ GIG A A LA+ A + + N E + V++ + + +
Sbjct: 5 MRFENKVGIVTGSGGGIGQAYAEALAREGAAVVVADINAEAAEAVAKQIVADG-GTAISV 63
Query: 61 QADLTSEEDTKRIIDTVVKHYQKLNVLVNNAGILEA---GSIENTSLEQYDKIMNVNVRS 117
D++ E K + D + + ++ LVNNA I + E Y K M+VN+
Sbjct: 64 AVDVSDPESAKAMADRTLAEFGGIDYLVNNAAIFGGMKLDFLLTIDPEYYKKFMSVNLDG 123
Query: 118 IYHLTMLAVPHLISTK-GNIVNVSSVNGLRSFPGVLAYCVSKAAVDQFTSCTALELASKG 176
T + G IVN SS Y ++K ++ T + EL +
Sbjct: 124 ALWCTRAVYKKMTKRGGGAIVNQSSTAAWL---YSNYYGLAKVGINGLTQQLSRELGGRN 180
Query: 177 VRVNSVNPGVTLTNLHKNSGIDQQAYQNFLERSKETHALGRVGNPEEVAKAIAFLASDDA 236
+R+N++ PG T + ++ + L R+G P+++ FL SD+A
Sbjct: 181 IRINAIAPGPIDTEA-----NRTTTPKEMVDDIVKGLPLSRMGTPDDLVGMCLFLLSDEA 235
Query: 237 SFTTGEHLTVDGGR 250
S+ TG+ VDGG+
Sbjct: 236 SWITGQIFNVDGGQ 249
>2z1n_A Dehydrogenase; reductase, SDR, oxidoreductase; 1.80A {Aeropyrum
pernix}
Length = 260
Score = 230 bits (590), Expect = 3e-76
Identities = 78/261 (29%), Positives = 123/261 (47%), Gaps = 14/261 (5%)
Query: 1 MNFTGKVILVTGASSGIGAATALHLAKLDAKLAITGRNVEQLDKVSESCQSVSKN-KPLV 59
+ GK+ +VT SSG+G A+AL LA+ A+L + RN E+L+ + S+ + +
Sbjct: 3 LGIQGKLAVVTAGSSGLGFASALELARNGARLLLFSRNREKLEAAASRIASLVSGAQVDI 62
Query: 60 IQADLTSEEDTKRIIDTVVKHYQKLNVLVNNAGILEAGSIENTSLEQYDKIMNVNVRSIY 119
+ D+ D R+ + + ++LV + G G +E +D+ + RS
Sbjct: 63 VAGDIREPGDIDRLFEKA-RDLGGADILVYSTGGPRPGRFMELGVEDWDESYRLLARSAV 121
Query: 120 HLTMLAVPHLISTK-GNIVNVSSVNGLRSFPGVLAYCVSKAAVDQFTSCTALELASKGVR 178
+ A ++ G +V + SV LR + + + + V ALELA GV
Sbjct: 122 WVGRRAAEQMVEKGWGRMVYIGSVTLLRPWQDLALSNIMRLPVIGVVRTLALELAPHGVT 181
Query: 179 VNSVNPGVTLT--------NLHKNSGIDQQAYQNFLERSKETHALGRVGNPEEVAKAIAF 230
VN+V P + LT + SGI + + +GRVG PEE+A +AF
Sbjct: 182 VNAVLPSLILTDRVRSLAEERARRSGITVEEAL---KSMASRIPMGRVGKPEELASVVAF 238
Query: 231 LASDDASFTTGEHLTVDGGRH 251
LAS+ ASF TG + VDGG H
Sbjct: 239 LASEKASFITGAVIPVDGGAH 259
>3afn_B Carbonyl reductase; alpha/beta/alpha, rossmann-fold,
oxidoreductase; HET: NAP; 1.63A {Sphingomonas SP} PDB:
3afm_A*
Length = 258
Score = 230 bits (589), Expect = 4e-76
Identities = 77/258 (29%), Positives = 122/258 (47%), Gaps = 17/258 (6%)
Query: 2 NFTGKVILVTGASSGIGAATALHLAKLDAKLAITGRNVEQ-LDKVSESCQSVSKNKPLVI 60
+ GK +L+TG+S GIG ATA A+ AK+ + GR +D+ S ++
Sbjct: 4 DLKGKRVLITGSSQGIGLATARLFARAGAKVGLHGRKAPANIDETIASMRADGG-DAAFF 62
Query: 61 QADLTSEEDTKRIIDTVVKHYQKLNVLVNNAG-ILEAGSIENTSLEQYDKIMNVNVRSIY 119
ADL + E ++++D V + ++VL+NNAG ++ + YD +M+ N+RS+
Sbjct: 63 AADLATSEACQQLVDEFVAKFGGIDVLINNAGGLVGRKPLPEIDDTFYDAVMDANIRSVV 122
Query: 120 HLTMLAVPHLISTK------GNIVNVSSVNGLRS-FPGVLAYCVSKAAVDQFTSCTALEL 172
T A+PHL + +++ S+ G PG Y +KA +
Sbjct: 123 MTTKFALPHLAAAAKASGQTSAVISTGSIAGHTGGGPGAGLYGAAKAFLHNVHKNWVDFH 182
Query: 173 ASKGVRVNSVNPGVTLTNLHKNSGIDQQAYQNFLERSKETHALGRVGNPEEVAKAIAFLA 232
GVR N V+PG T H + D + +R +GR G EE+A A F A
Sbjct: 183 TKDGVRFNIVSPGTVDTAFHADKTQDVR------DRISNGIPMGRFGTAEEMAPAFLFFA 236
Query: 233 SDDAS-FTTGEHLTVDGG 249
S AS + TG+ L ++GG
Sbjct: 237 SHLASGYITGQVLDINGG 254
>3l6e_A Oxidoreductase, short-chain dehydrogenase/reducta; structural
genomics, PSI-2, protein structure initiative; 2.30A
{Aeromonas hydrophila subsp}
Length = 235
Score = 229 bits (586), Expect = 5e-76
Identities = 52/250 (20%), Positives = 92/250 (36%), Gaps = 20/250 (8%)
Query: 4 TGKVILVTGASSGIGAATALHLAKLDAKLAITGRNVEQLDKVSESCQSVSKNKPLVIQAD 63
+ I+VTGA SG+G A + L + ++++ GR ++L + N + I AD
Sbjct: 2 SLGHIIVTGAGSGLGRALTIGLVERGHQVSMMGRRYQRLQQQELLLG----NAVIGIVAD 57
Query: 64 LTSEEDTKRIIDTVVKHYQKLNVLVNNAGILEAGSIENTSLEQYDKIMNVNVRSIYHLTM 123
L ED V+ ++++ AG E G + + EQ ++M N+ S +
Sbjct: 58 LAHHEDVDVAFAAAVEWGGLPELVLHCAGTGEFGPVGVYTAEQIRRVMESNLVSTILVAQ 117
Query: 124 LAVPHLISTKGNIVNVSSVNGLRSFPGVLAYCVSKAAVDQFTSCTALELASKGVRVNSVN 183
V + G + NV S YC SK + F EL +R+ ++
Sbjct: 118 QTVRLIGERGGVLANVLSSAAQVGKANESLYCASKWGMRGFLESLRAELKDSPLRLVNLY 177
Query: 184 PGVTLTNLHKNSGIDQQAYQNFLERSKETHALGRVGNPEEVAKAIAF-LASDDASFTTGE 242
P + F + + PE+ A + L + + T
Sbjct: 178 PSGIRS--------------EFWDNTDHVDP-SGFMTPEDAAAYMLDALEARSSCHVTDL 222
Query: 243 HLTVDGGRHA 252
+ + G H
Sbjct: 223 FIGRNEGHHH 232
>1mxh_A Pteridine reductase 2; SDR topology, protein-substrate complex,
oxidoreductase; HET: NAP DHF; 2.20A {Trypanosoma cruzi}
SCOP: c.2.1.2 PDB: 1mxf_A*
Length = 276
Score = 230 bits (589), Expect = 7e-76
Identities = 60/271 (22%), Positives = 103/271 (38%), Gaps = 31/271 (11%)
Query: 4 TGKVILVTGASSGIGAATALHLAKLDAKLAITGR-NVEQLDKVSESCQSVSKNKPLVIQA 62
++TG + IG + A+ L + ++ + R + ++ + ++ +
Sbjct: 10 ECPAAVITGGARRIGHSIAVRLHQQGFRVVVHYRHSEGAAQRLVAELNAARAGSAVLCKG 69
Query: 63 DLTSEED----TKRIIDTVVKHYQKLNVLVNNAGILEAGSI-----------ENTSLEQY 107
DL+ + IID + + + +VLVNNA + Q
Sbjct: 70 DLSLSSSLLDCCEDIIDCSFRAFGRCDVLVNNASAYYPTPLLPGDDTNGAADAKPIDAQV 129
Query: 108 DKIMNVNVRSIYHLTMLAVPHLIST------KGNIVNVSSVNGLRSFPGVLAYCVSKAAV 161
++ N + L ++VN+ PG Y ++K A+
Sbjct: 130 AELFGSNAVAPLFLIRAFARRQGEGGAWRSRNLSVVNLCDAMTDLPLPGFCVYTMAKHAL 189
Query: 162 DQFTSCTALELASKGVRVNSVNPGVTLTNLHKNSGIDQQAYQNFLERSKETHALGR-VGN 220
T ALELA + +RVN+V PG++L E + LG+ +
Sbjct: 190 GGLTRAAALELAPRHIRVNAVAPGLSLLPPAMPQET--------QEEYRRKVPLGQSEAS 241
Query: 221 PEEVAKAIAFLASDDASFTTGEHLTVDGGRH 251
++A AIAFL S DA + TG L VDGG
Sbjct: 242 AAQIADAIAFLVSKDAGYITGTTLKVDGGLI 272
>2gdz_A NAD+-dependent 15-hydroxyprostaglandin dehydrogen; dehydrogenase,
structural genomics, SH dehydrogenase/reductase,
inflammation; HET: NAD; 1.65A {Homo sapiens} SCOP:
c.2.1.2
Length = 267
Score = 230 bits (588), Expect = 7e-76
Identities = 71/258 (27%), Positives = 120/258 (46%), Gaps = 19/258 (7%)
Query: 3 FTGKVILVTGASSGIGAATALHLAKLDAKLAITGRNVEQLDK-VSESCQSVSKNKPLVIQ 61
GKV LVTGA+ GIG A A L AK+A+ N+E + + + K L IQ
Sbjct: 5 VNGKVALVTGAAQGIGRAFAEALLLKGAKVALVDWNLEAGVQCKAALHEQFEPQKTLFIQ 64
Query: 62 ADLTSEEDTKRIIDTVVKHYQKLNVLVNNAGILEAGSIENTSLEQYDKIMNVNVRSIYHL 121
D+ ++ + VV H+ +L++LVNNAG+ + + ++K + +N+ S+
Sbjct: 65 CDVADQQQLRDTFRKVVDHFGRLDILVNNAGV--------NNEKNWEKTLQINLVSVISG 116
Query: 122 TMLAVPHLISTK----GNIVNVSSVNGLRSFPGVLAYCVSKAAVDQFTSCTAL--ELASK 175
T L + ++ G I+N+SS+ GL YC SK + FT AL L +
Sbjct: 117 TYLGLDYMSKQNGGEGGIIINMSSLAGLMPVAQQPVYCASKHGIVGFTRSAALAANLMNS 176
Query: 176 GVRVNSVNPGVTLTNLHKN--SGIDQQAYQNFLERSKETHALGRVGNPEEVAKAIAFLAS 233
GVR+N++ PG T + ++ + Y + + K+ + +P +A + L
Sbjct: 177 GVRLNAICPGFVNTAILESIEKEENMGQYIEYKDHIKDMIKYYGILDPPLIANGLITLIE 236
Query: 234 DDASFTTGEHLTVDGGRH 251
DDA G + + +
Sbjct: 237 DDAL--NGAIMKITTSKG 252
>1sby_A Alcohol dehydrogenase; ternary complex, NAD, trifluoroethanol,
oxidoreductase; HET: NAD; 1.10A {Scaptodrosophila
lebanonensis} SCOP: c.2.1.2 PDB: 1b14_A* 1b15_A* 1a4u_A*
1b2l_A* 1b16_A* 3rj5_A* 3rj9_A* 1mg5_A*
Length = 254
Score = 229 bits (585), Expect = 1e-75
Identities = 58/255 (22%), Positives = 97/255 (38%), Gaps = 20/255 (7%)
Query: 1 MNFTGKVILVTGASSGIGAATALHLAKLDAKLAITGRNVEQLDKVSESCQSVSKNKPLVI 60
M+ T K ++ A GIG T+ L K + K + VE ++E K
Sbjct: 1 MDLTNKNVIFVAALGGIGLDTSRELVKRNLKNFVILDRVENPTALAELKAINPKVNITFH 60
Query: 61 QADLT-SEEDTKRIIDTVVKHYQKLNVLVNNAGILEAGSIENTSLEQYDKIMNVNVRSIY 119
D+T ++K+++ + + +++L+N AGI Q ++ + +N +
Sbjct: 61 TYDVTVPVAESKKLLKKIFDQLKTVDILINGAGI--------LDDHQIERTIAINFTGLV 112
Query: 120 HLTMLAVPHLISTK----GNIVNVSSVNGLRSFPGVLAYCVSKAAVDQFTSCTALELASK 175
+ T + K G I N+ SV G + V Y SKAAV FT+ A
Sbjct: 113 NTTTAILDFWDKRKGGPGGIIANICSVTGFNAIHQVPVYSASKAAVVSFTNSLAKLAPIT 172
Query: 176 GVRVNSVNPGVTLTNLHKNSGIDQQAYQNFLERSKETHALGRVGNPEEVAKAIAFLASDD 235
GV S+NPG+T T L ++ + R E E+ + +
Sbjct: 173 GVTAYSINPGITRTPLVHTFN----SWLDVEPRVAELLLSHPTQTSEQCGQNFVKAIEAN 228
Query: 236 ASFTTGEHLTVDGGR 250
G +D G
Sbjct: 229 K---NGAIWKLDLGT 240
>2ew8_A (S)-1-phenylethanol dehydrogenase; transferase; 2.10A {Azoarcus SP}
SCOP: c.2.1.2 PDB: 2ewm_A*
Length = 249
Score = 228 bits (584), Expect = 2e-75
Identities = 70/248 (28%), Positives = 116/248 (46%), Gaps = 8/248 (3%)
Query: 3 FTGKVILVTGASSGIGAATALHLAKLDAKLAITGRNVEQLDKVSESCQSVSKNKPLVIQA 62
K+ ++TG ++GIG A A A A +AI + + +++ + + L ++
Sbjct: 5 LKDKLAVITGGANGIGRAIAERFAVEGADIAIADLVPAP--EAEAAIRNLGR-RVLTVKC 61
Query: 63 DLTSEEDTKRIIDTVVKHYQKLNVLVNNAGILEAGSIENTSLEQYDKIMNVNVRSIYHLT 122
D++ D + V+ + + ++LVNNAGI + + EQ+ K +NV S + +
Sbjct: 62 DVSQPGDVEAFGKQVISTFGRCDILVNNAGIYPLIPFDELTFEQWKKTFEINVDSGFLMA 121
Query: 123 MLAVPHLISTK-GNIVNVSSVNGLRSFPGVLAYCVSKAAVDQFTSCTALELASKGVRVNS 181
VP + G I+N++S Y +KAA FT A +L G+ VN+
Sbjct: 122 KAFVPGMKRNGWGRIINLTSTTYWLKIEAYTHYISTKAANIGFTRALASDLGKDGITVNA 181
Query: 182 VNPGVTLTNLHKNSGIDQQAYQNFLERSKETHALGRVGNPEEVAKAIAFLASDDASFTTG 241
+ P + T + S + A+ R+ P ++ A AFLASDDASF TG
Sbjct: 182 IAPSLVRTATTEASALSAMF----DVLPNMLQAIPRLQVPLDLTGAAAFLASDDASFITG 237
Query: 242 EHLTVDGG 249
+ L VDGG
Sbjct: 238 QTLAVDGG 245
>1x1t_A D(-)-3-hydroxybutyrate dehydrogenase; NAD, NADH, SDR, short chain
dehydrogenase, ketone BODY, beta hydroxybutyrate,
oxidoreductase; HET: NAD; 1.52A {Pseudomonas fragi}
SCOP: c.2.1.2 PDB: 1wmb_A* 2ztl_A* 2ztv_A* 2ztm_A*
2ztu_A* 2yz7_A 2zea_A* 3eew_A* 3vdq_A* 3vdr_A*
Length = 260
Score = 228 bits (584), Expect = 3e-75
Identities = 81/255 (31%), Positives = 129/255 (50%), Gaps = 8/255 (3%)
Query: 3 FTGKVILVTGASSGIGAATALHLAKLDAKLAITGRN-VEQLDKVSESCQSVSKNKPLVIQ 61
GKV +VTG++SGIG A LA A + + G +++KV + K L
Sbjct: 2 LKGKVAVVTGSTSGIGLGIATALAAQGADIVLNGFGDAAEIEKVRAGLAAQHGVKVLYDG 61
Query: 62 ADLTSEEDTKRIIDTVVKHYQKLNVLVNNAGILEAGSIENTSLEQYDKIMNVNVRSIYHL 121
ADL+ E + ++D V+ ++++LVNNAGI IE+ E++D I+ +N+ +++H
Sbjct: 62 ADLSKGEAVRGLVDNAVRQMGRIDILVNNAGIQHTALIEDFPTEKWDAILALNLSAVFHG 121
Query: 122 TMLAVPHLISTK-GNIVNVSSVNGLRSFPGVLAYCVSKAAVDQFTSCTALELASKGVRVN 180
T A+PH+ G I+N++S +GL + AY +K V FT TALE A +G+ N
Sbjct: 122 TAAALPHMKKQGFGRIINIASAHGLVASANKSAYVAAKHGVVGFTKVTALETAGQGITAN 181
Query: 181 SVNPGVTLTNLHKNSGIDQQAYQNFLERSK------ETHALGRVGNPEEVAKAIAFLASD 234
++ PG T L + + + E + PE++ FLASD
Sbjct: 182 AICPGWVRTPLVEKQISALAEKNGVDQETAARELLSEKQPSLQFVTPEQLGGTAVFLASD 241
Query: 235 DASFTTGEHLTVDGG 249
A+ TG ++VDGG
Sbjct: 242 AAAQITGTTVSVDGG 256
>2q2v_A Beta-D-hydroxybutyrate dehydrogenase; SDR, oxidoreductase; HET:
NAD; 1.90A {Pseudomonas putida} PDB: 2q2q_A* 2q2w_A
Length = 255
Score = 228 bits (583), Expect = 3e-75
Identities = 75/253 (29%), Positives = 117/253 (46%), Gaps = 9/253 (3%)
Query: 3 FTGKVILVTGASSGIGAATALHLAKLDAKLAITGRNVEQLDKVSESCQSVSKNKPLVIQA 62
GK LVTG++SGIG A LA+ A + + G K + A
Sbjct: 2 LKGKTALVTGSTSGIGLGIAQVLARAGANIVLNGFGDP--APALAEIARHG-VKAVHHPA 58
Query: 63 DLTSEEDTKRIIDTVVKHYQKLNVLVNNAGILEAGSIENTSLEQYDKIMNVNVRSIYHLT 122
DL+ + + + + +++LVNNAGI +E LE +DKI+ +N+ +++H T
Sbjct: 59 DLSDVAQIEALFALAEREFGGVDILVNNAGIQHVAPVEQFPLESWDKIIALNLSAVFHGT 118
Query: 123 MLAVPHLISTK-GNIVNVSSVNGLRSFPGVLAYCVSKAAVDQFTSCTALELASKGVRVNS 181
LA+P + + G I+N++SV+GL G AY +K V T LE A+ V N+
Sbjct: 119 RLALPGMRARNWGRIINIASVHGLVGSTGKAAYVAAKHGVVGLTKVVGLETATSNVTCNA 178
Query: 182 VNPGVTLTNLHKNSGIDQQAYQNFLERSK-----ETHALGRVGNPEEVAKAIAFLASDDA 236
+ PG LT L + D+ A +++ E PE + + + FL S+
Sbjct: 179 ICPGWVLTPLVQKQIDDRAANGGDPLQAQHDLLAEKQPSLAFVTPEHLGELVLFLCSEAG 238
Query: 237 SFTTGEHLTVDGG 249
S G VDGG
Sbjct: 239 SQVRGAAWNVDGG 251
>3i1j_A Oxidoreductase, short chain dehydrogenase/reducta; dimer, MIXE
beta, structural genomics, PSI-2; 1.90A {Pseudomonas
syringae PV}
Length = 247
Score = 227 bits (582), Expect = 4e-75
Identities = 74/247 (29%), Positives = 116/247 (46%), Gaps = 19/247 (7%)
Query: 3 FTGKVILVTGASSGIGAATALHLAKLDAKLAITGRNVEQLDKVSESCQSVSKNKPLVI-- 60
G+VILVTGA+ GIGAA A A A + + GR L +VS+ +S + +PL+I
Sbjct: 12 LKGRVILVTGAARGIGAAAARAYAAHGASVVLLGRTEASLAEVSDQIKSAGQPQPLIIAL 71
Query: 61 QADLTSEEDTKRIIDTVVKHYQKLNVLVNNAGIL-EAGSIENTSLEQYDKIMNVNVRSIY 119
+ + + + + V + +L+ L++NA I+ +E E + ++M+VNV + +
Sbjct: 72 NLENATAQQYRELAARVEHEFGRLDGLLHNASIIGPRTPLEQLPDEDFMQVMHVNVNATF 131
Query: 120 HLTMLAVPHLI-STKGNIVNVSSVNGLRSFPGVLAYCVSKAAVDQFTSCTALEL-ASKGV 177
LT +P L S +I SS G + AY VSK A + A EL V
Sbjct: 132 MLTRALLPLLKRSEDASIAFTSSSVGRKGRANWGAYGVSKFATEGLMQTLADELEGVTAV 191
Query: 178 RVNSVNPGVTLTNLHKNSGIDQQAYQNFLERSKETHALGRVGNPEEVAKAIAFLASDDAS 237
R NS+NPG T T + QAY + + L PE++ +L D++
Sbjct: 192 RANSINPGATRTGMRA------QAY-------PDENPLNNPA-PEDIMPVYLYLMGPDST 237
Query: 238 FTTGEHL 244
G+ L
Sbjct: 238 GINGQAL 244
>3r1i_A Short-chain type dehydrogenase/reductase; structural genomics,
seattle structural genomics center for infectious
disease, ssgcid; 1.95A {Mycobacterium marinum}
Length = 276
Score = 227 bits (582), Expect = 9e-75
Identities = 78/253 (30%), Positives = 130/253 (51%), Gaps = 12/253 (4%)
Query: 1 MNFTGKVILVTGASSGIGAATALHLAKLDAKLAITGRNVEQLDKVSESCQSVSKNKPLVI 60
+ +GK L+TGAS+GIG AL A+ A++A+ R+ + L V++ V K L I
Sbjct: 28 FDLSGKRALITGASTGIGKKVALAYAEAGAQVAVAARHSDALQVVADEIAGVGG-KALPI 86
Query: 61 QADLTSEEDTKRIIDTVVKHYQKLNVLVNNAGILEAGSIENTSLEQYDKIMNVNVRSIYH 120
+ D+T + + ++D + +++ V NAGI+ ++ + LE++ +I + NV ++
Sbjct: 87 RCDVTQPDQVRGMLDQMTGELGGIDIAVCNAGIVSVQAMLDMPLEEFQRIQDTNVTGVFL 146
Query: 121 LTMLAVPHLISTK--GNIVNVSSVNGLRSFPG--VLAYCVSKAAVDQFTSCTALELASKG 176
A ++ G I+ +S++G V YC SKAAV T A+ELA
Sbjct: 147 TAQAAARAMVDQGLGGTIITTASMSGHIINIPQQVSHYCTSKAAVVHLTKAMAVELAPHQ 206
Query: 177 VRVNSVNPGVTLTNLHKNSGIDQQAYQNFLERSKETHALGRVGNPEEVAKAIAFLASDDA 236
+RVNSV+PG T L + ++ + LGR+G PEE+ +LAS +
Sbjct: 207 IRVNSVSPGYIRTEL-------VEPLADYHALWEPKIPLGRMGRPEELTGLYLYLASAAS 259
Query: 237 SFTTGEHLTVDGG 249
S+ TG + +DGG
Sbjct: 260 SYMTGSDIVIDGG 272
>3t4x_A Oxidoreductase, short chain dehydrogenase/reducta; structural
genomics, center for structural genomics of infec
diseases, csgid; 2.80A {Bacillus anthracis}
Length = 267
Score = 226 bits (579), Expect = 2e-74
Identities = 72/260 (27%), Positives = 124/260 (47%), Gaps = 15/260 (5%)
Query: 1 MNFTGKVILVTGASSGIGAATALHLAKLDAKLAITGRNVEQLDKVSESCQS-VSKNKPLV 59
M GK LVTG+++GIG A A L A + I GR E +++ + ++
Sbjct: 6 MQLKGKTALVTGSTAGIGKAIATSLVAEGANVLINGRREENVNETIKEIRAQYPDAILQP 65
Query: 60 IQADLTSEEDTKRIIDTVVKHYQKLNVLVNNAGILEAGSIENTSLEQYDKIMNVNVRSIY 119
+ ADL +E+ V++ Y K+++L+NN GI E + E + K+ VN+ S
Sbjct: 66 VVADLGTEQG----CQDVIEKYPKVDILINNLGIFEPVEYFDIPDEDWFKLFEVNIMSGV 121
Query: 120 HLTMLAVPHLISTK-GNIVNVSSVNGLRSFPGVLAYCVSKAAVDQFTSCTALELASKGVR 178
LT + +I K G ++ ++S + + Y +K + A V
Sbjct: 122 RLTRSYLKKMIERKEGRVIFIASEAAIMPSQEMAHYSATKTMQLSLSRSLAELTTGTNVT 181
Query: 179 VNSVNPGVTLT--------NLHKNSGID-QQAYQNFLERSKETHALGRVGNPEEVAKAIA 229
VN++ PG TLT +L+ N + ++A + F++ ++ T + R+ PEE+A +
Sbjct: 182 VNTIMPGSTLTEGVETMLNSLYPNEQLTIEEAEKRFMKENRPTSIIQRLIRPEEIAHLVT 241
Query: 230 FLASDDASFTTGEHLTVDGG 249
FL+S +S G L +DGG
Sbjct: 242 FLSSPLSSAINGSALRIDGG 261
>1e7w_A Pteridine reductase; dihydrofolate reductase, shortchain
dehydrogenase, methotrexate resistance, oxidoreductase;
HET: NDP MTX; 1.75A {Leishmania major} SCOP: c.2.1.2
PDB: 1w0c_A* 1e92_A* 2bf7_A* 2bfa_A* 2bfm_A* 2bfo_A*
2bfp_A* 2p8k_A* 3h4v_A* 2xox_A 1p33_A*
Length = 291
Score = 227 bits (580), Expect = 2e-74
Identities = 59/290 (20%), Positives = 106/290 (36%), Gaps = 46/290 (15%)
Query: 1 MNFTGKVILVTGASSGIGAATALHLAKLDAKLAIT-GRNVEQLDKVSESCQSVSKNKPLV 59
T V LVTGA+ +G + A L + + R+ + + +S + + N +
Sbjct: 5 TAPTVPVALVTGAAKRLGRSIAEGLHAEGYAVCLHYHRSAAEANALSATLNARRPNSAIT 64
Query: 60 IQADLTSEEDT-----------------KRIIDTVVKHYQKLNVLVNNAGILEAGSIENT 102
+QADL++ ++ H+ + +VLVNNA +
Sbjct: 65 VQADLSNVATAPVSGADGSAPVTLFTRCAELVAACYTHWGRCDVLVNNASSFYPTPLLRN 124
Query: 103 SLEQYD--------------KIMNVNVRSIYHLTMLAVPHLISTK-------GNIVNVSS 141
+ ++ + N + Y L + T +I+N+
Sbjct: 125 DEDGHEPCVGDREAMETATADLFGSNAIAPYFLIKAFAHRVAGTPAKHRGTNYSIINMVD 184
Query: 142 VNGLRSFPGVLAYCVSKAAVDQFTSCTALELASKGVRVNSVNPGVTLTNLHKNSGIDQQA 201
+ G Y ++K A++ T ALELA +RVN V PG+++ + +
Sbjct: 185 AMTNQPLLGYTIYTMAKGALEGLTRSAALELAPLQIRVNGVGPGLSVLVDDMPPAVWEGH 244
Query: 202 YQNFLERSKETHALGRVGNPEEVAKAIAFLASDDASFTTGEHLTVDGGRH 251
+ R + EV+ + FL S A + TG + VDGG
Sbjct: 245 -------RSKVPLYQRDSSAAEVSDVVIFLCSSKAKYITGTCVKVDGGYS 287
>3tsc_A Putative oxidoreductase; structural genomics, seattle structural
genomics center for infectious disease, ssgcid,
nucleotide; HET: NAD; 2.05A {Mycobacterium avium subsp}
Length = 277
Score = 226 bits (578), Expect = 3e-74
Identities = 62/266 (23%), Positives = 115/266 (43%), Gaps = 20/266 (7%)
Query: 3 FTGKVILVTGASSGIGAATALHLAKLDAKLAIT-------------GRNVEQLDKVSESC 49
G+V +TGA+ G G A A+ +A A + + + L +
Sbjct: 9 LEGRVAFITGAARGQGRAHAVRMAAEGADIIAVDIAGKLPSCVPYDPASPDDLSETVRLV 68
Query: 50 QSVSKNKPLVIQADLTSEEDTKRIIDTVVKHYQKLNVLVNNAGILEAGSIENTSLEQYDK 109
++ ++ + + D + ++++D V +L+++V NAG+ + ++ + E +
Sbjct: 69 EAANR-RIVAAVVDTRDFDRLRKVVDDGVAALGRLDIIVANAGVAAPQAWDDITPEDFRD 127
Query: 110 IMNVNVRSIYHLTMLAVPHLIS--TKGNIVNVSSVNGLRSFPGVLAYCVSKAAVDQFTSC 167
+M++NV ++ M P +I G+I+ +SS G++ P ++ Y SK AV
Sbjct: 128 VMDINVTGTWNTVMAGAPRIIEGGRGGSIILISSAAGMKMQPFMIHYTASKHAVTGLARA 187
Query: 168 TALELASKGVRVNSVNPGVTLT----NLHKNSGIDQQAYQNFLERSKETHALGRVGNPEE 223
A EL +RVNSV+PG T + L V PE+
Sbjct: 188 FAAELGKHSIRVNSVHPGPVNTPMGSGDMVTAVGQAMETNPQLSHVLTPFLPDWVAEPED 247
Query: 224 VAKAIAFLASDDASFTTGEHLTVDGG 249
+A + +LASD++ T + VD G
Sbjct: 248 IADTVCWLASDESRKVTAAQIPVDQG 273
>1h5q_A NADP-dependent mannitol dehydrogenase; oxidoreductase, mannitol
metabolism; HET: NAP; 1.50A {Agaricus bisporus} SCOP:
c.2.1.2
Length = 265
Score = 224 bits (573), Expect = 1e-73
Identities = 66/258 (25%), Positives = 112/258 (43%), Gaps = 15/258 (5%)
Query: 1 MNFTGKVILVTGASSGIGAATALHLAKLDAKLAITGRNVEQLDKVSESCQSVSKNKPLVI 60
++F K I+VTG + GIG A +A A +A+ R+ +V+E K
Sbjct: 10 ISFVNKTIIVTGGNRGIGLAFTRAVAAAGANVAVIYRSAADAVEVTEKVGKEFGVKTKAY 69
Query: 61 QADLTSEEDTKRIIDTVVKHYQKLNVLVNNAGILEAGSIENTSLEQYDKIMNVNVRSIYH 120
Q D+++ + + I + ++ L+ NAG+ + E + + +VNV +++
Sbjct: 70 QCDVSNTDIVTKTIQQIDADLGPISGLIANAGVSVVKPATELTHEDFAFVYDVNVFGVFN 129
Query: 121 LTMLAVPHLIS--TKGNIVNVSSVNG-------LRSFPGVLAYCVSKAAVDQFTSCTALE 171
+ KG+IV SS++ L + Y SKAA A E
Sbjct: 130 TCRAVAKLWLQKQQKGSIVVTSSMSSQIINQSSLNGSLTQVFYNSSKAACSNLVKGLAAE 189
Query: 172 LASKGVRVNSVNPGVTLTNLHKNSGIDQQAYQNFLERSKETHALGRVGNPEEVAKAIAFL 231
AS G+RVN+++PG T+ + +D++ + L R PEE+ L
Sbjct: 190 WASAGIRVNALSPGYVNTDQ--TAHMDKKIRDHQASNI----PLNRFAQPEEMTGQAILL 243
Query: 232 ASDDASFTTGEHLTVDGG 249
SD A++ TG +DGG
Sbjct: 244 LSDHATYMTGGEYFIDGG 261
>3dii_A Short-chain dehydrogenase/reductase SDR; SCOR, rossmann fold,
oxidoreductase; 1.70A {Clostridium thermocellum atcc
27405} PDB: 3dij_A* 3ged_A 3geg_A*
Length = 247
Score = 223 bits (571), Expect = 2e-73
Identities = 65/249 (26%), Positives = 113/249 (45%), Gaps = 21/249 (8%)
Query: 1 MNFTGKVILVTGASSGIGAATALHLAKLDAKLAITGRNVEQLDKVSESCQSVSKNKPLVI 60
MN + ++VTG GIG L + K+ + ++ ++ ++
Sbjct: 1 MN---RGVIVTGGGHGIGKQICLDFLEAGDKVCFIDIDEKRSADFAKERPNL-----FYF 52
Query: 61 QADLTSEEDTKRIIDTVVKHYQKLNVLVNNAGILEAGSIENTSLEQYDKIMNVNVRSIYH 120
D+ K+ ++ ++ Q+++VLVNNA G + + E++D I++V +++ Y
Sbjct: 53 HGDVADPLTLKKFVEYAMEKLQRIDVLVNNACRGSKGILSSLLYEEFDYILSVGLKAPYE 112
Query: 121 LTMLAVPHLISTKGNIVNVSSVNGLRSFPGVLAYCVSKAAVDQFTSCTALELASKGVRVN 180
L+ L LI KG I+N++S +S P AY +K + T A+ L V VN
Sbjct: 113 LSRLCRDELIKNKGRIINIASTRAFQSEPDSEAYASAKGGIVALTHALAMSLGP-DVLVN 171
Query: 181 SVNPGVTLTNLHKNSGIDQQAYQNFLERSKETHALGRVGNPEEVAKAIAFLASDDASFTT 240
+ PG I+ Q F + G+VG P++++ + FL D F T
Sbjct: 172 CIAPGW----------INVTEQQEFTQEDCAAIPAGKVGTPKDISNMVLFLCQQD--FIT 219
Query: 241 GEHLTVDGG 249
GE + VDGG
Sbjct: 220 GETIIVDGG 228
>2qhx_A Pteridine reductase 1; oxidoreductase, short-chain
dehydrogenase/reductase, trypanosomatid, pterin salvage,
drug resistance; HET: NAP FE1; 2.61A {Leishmania major}
SCOP: c.2.1.2
Length = 328
Score = 226 bits (577), Expect = 2e-73
Identities = 59/290 (20%), Positives = 106/290 (36%), Gaps = 46/290 (15%)
Query: 1 MNFTGKVILVTGASSGIGAATALHLAKLDAKLAIT-GRNVEQLDKVSESCQSVSKNKPLV 59
T V LVTGA+ +G + A L + + R+ + + +S + + N +
Sbjct: 42 TAPTVPVALVTGAAKRLGRSIAEGLHAEGYAVCLHYHRSAAEANALSATLNARRPNSAIT 101
Query: 60 IQADLTSEEDT-----------------KRIIDTVVKHYQKLNVLVNNAGILEAGSIENT 102
+QADL++ ++ H+ + +VLVNNA +
Sbjct: 102 VQADLSNVATAPVSGADGSAPVTLFTRCAELVAACYTHWGRCDVLVNNASSFYPTPLLRN 161
Query: 103 SLEQYD--------------KIMNVNVRSIYHLTMLAVPHLISTK-------GNIVNVSS 141
+ ++ + N + Y L + T +I+N+
Sbjct: 162 DEDGHEPCVGDREAMETATADLFGSNAIAPYFLIKAFAHRVAGTPAKHRGTNYSIINMVD 221
Query: 142 VNGLRSFPGVLAYCVSKAAVDQFTSCTALELASKGVRVNSVNPGVTLTNLHKNSGIDQQA 201
+ G Y ++K A++ T ALELA +RVN V PG+++ + +
Sbjct: 222 AMTNQPLLGYTIYTMAKGALEGLTRSAALELAPLQIRVNGVGPGLSVLVDDMPPAVWEGH 281
Query: 202 YQNFLERSKETHALGRVGNPEEVAKAIAFLASDDASFTTGEHLTVDGGRH 251
+ R + EV+ + FL S A + TG + VDGG
Sbjct: 282 -------RSKVPLYQRDSSAAEVSDVVIFLCSSKAKYITGTCVKVDGGYS 324
>2wsb_A Galactitol dehydrogenase; oxidoreductase, SDR, rossmann fold,
tagatose; HET: NAD; 1.25A {Rhodobacter sphaeroides} PDB:
2wdz_A* 3lqf_A*
Length = 254
Score = 222 bits (569), Expect = 4e-73
Identities = 76/249 (30%), Positives = 114/249 (45%), Gaps = 11/249 (4%)
Query: 4 TGKVILVTGASSGIGAATALHLAKLDAKLAITGRNVEQLDKVSESCQSVSKNKPLVIQAD 63
G VTGA SGIG A A+L + R LD+ ++ + I AD
Sbjct: 10 DGACAAVTGAGSGIGLEICRAFAASGARLILIDREAAALDRAAQELGAA---VAARIVAD 66
Query: 64 LTSEEDTKRIIDTVVKHYQKLNVLVNNAGILEAGSIENTSLEQYDKIMNVNVRSIYHLTM 123
+T E + +++LVN+AGI T + ++M VNV ++ +
Sbjct: 67 VTDAEAMTAAAAEA-EAVAPVSILVNSAGIARLHDALETDDATWRQVMAVNVDGMFWASR 125
Query: 124 LAVPHLISTK-GNIVNVSSVNGLRSFPG--VLAYCVSKAAVDQFTSCTALELASKGVRVN 180
+++ G IVN+ S++G +Y SK AV Q T A E A +GVRVN
Sbjct: 126 AFGRAMVARGAGAIVNLGSMSGTIVNRPQFASSYMASKGAVHQLTRALAAEWAGRGVRVN 185
Query: 181 SVNPGVTLTNLHKNSGIDQQAYQNFLERSKETHALGRVGNPEEVAKAIAFLASDDASFTT 240
++ PG T + + ++ +L+ + +GR G P E+A A FLAS AS+ T
Sbjct: 186 ALAPGYVATEMTLKMRERPELFETWLDMT----PMGRCGEPSEIAAAALFLASPAASYVT 241
Query: 241 GEHLTVDGG 249
G L VDGG
Sbjct: 242 GAILAVDGG 250
>4dry_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics,
PSI-biology, NEW YORK structural genomi research
consortium, nysgrc; 2.50A {Sinorhizobium meliloti}
Length = 281
Score = 223 bits (570), Expect = 6e-73
Identities = 52/254 (20%), Positives = 101/254 (39%), Gaps = 12/254 (4%)
Query: 1 MNFTGKVILVTGASSGIGAATALHLAKLDAKLAITGRNVEQLDKVSESCQSVSKNKPLVI 60
+ G++ LVTG +G+G A L+ + ITGR + LD + + N +
Sbjct: 29 GSGEGRIALVTGGGTGVGRGIAQALSAEGYSVVITGRRPDVLDAAAGEIGGRTGNIVRAV 88
Query: 61 QADLTSEEDTKRIIDTVVKHYQKLNVLVNNAGI-LEAGSIENTSLEQYDKIMNVNVRSIY 119
D+ + + V + +L++LVNNAG + +E + EQ++ I+ N+ +
Sbjct: 89 VCDVGDPDQVAALFAAVRAEFARLDLLVNNAGSNVPPVPLEEVTFEQWNGIVAANLTGAF 148
Query: 120 HLTMLAVPHLISTK---GNIVNVSSVNGLRSFPGVLAYCVSKAAVDQFTSCTALELASKG 176
T A + + G I+N S++ P Y +K A+ T TAL+
Sbjct: 149 LCTQHAFRMMKAQTPRGGRIINNGSISAQTPRPNSAPYTATKHAITGLTKSTALDGRMHD 208
Query: 177 VRVNSVNPGVTLTNLHKNSGIDQQAYQNFLERSKETHALGRVGNPEEVAKAIAFLASD-D 235
+ ++ G T++ ++ A E +A+A+ ++AS
Sbjct: 209 IACGQIDIGNAATDMTARMSTGV-------LQANGEVAAEPTIPIEHIAEAVVYMASLPL 261
Query: 236 ASFTTGEHLTVDGG 249
++ +
Sbjct: 262 SANVLTMTVMATRM 275
>3ijr_A Oxidoreductase, short chain dehydrogenase/reducta; structural
genomics, infectious D center for structural genomics of
infectious diseases; HET: NAD; 2.05A {Bacillus anthracis
str} PDB: 3i3o_A*
Length = 291
Score = 223 bits (570), Expect = 8e-73
Identities = 82/249 (32%), Positives = 125/249 (50%), Gaps = 11/249 (4%)
Query: 4 TGKVILVTGASSGIGAATALHLAKLDAKLAITGRNVEQLDKVSESCQSVSKN--KPLVIQ 61
GK +L+TG SGIG A ++ AK A +AI + E +E+ Q V K K +++
Sbjct: 46 KGKNVLITGGDSGIGRAVSIAFAKEGANIAIAYLDEE--GDANETKQYVEKEGVKCVLLP 103
Query: 62 ADLTSEEDTKRIIDTVVKHYQKLNVLVNNAGILEA-GSIENTSLEQYDKIMNVNVRSIYH 120
DL+ E+ K I+ V+ LN+LVNN +E + EQ +K +N+ S +H
Sbjct: 104 GDLSDEQHCKDIVQETVRQLGSLNILVNNVAQQYPQQGLEYITAEQLEKTFRINIFSYFH 163
Query: 121 LTMLAVPHLISTKGNIVNVSSVNGLRSFPGVLAYCVSKAAVDQFTSCTALELASKGVRVN 180
+T A+ HL I+N +S+ ++ Y +K A+ FT + L KG+RVN
Sbjct: 164 VTKAALSHL-KQGDVIINTASIVAYEGNETLIDYSATKGAIVAFTRSLSQSLVQKGIRVN 222
Query: 181 SVNPGVTLTNLHKNSGIDQQAYQNFLERSKETHALGRVGNPEEVAKAIAFLASDDASFTT 240
V PG T L S D++ F + R G P E+A A +LAS D+S+ T
Sbjct: 223 GVAPGPIWTPLIP-SSFDEKKVSQFGSNV----PMQRPGQPYELAPAYVYLASSDSSYVT 277
Query: 241 GEHLTVDGG 249
G+ + V+GG
Sbjct: 278 GQMIHVNGG 286
>3ctm_A Carbonyl reductase; alcohol dehydrogenase, short-chain
dehydrogenases/reductases (SDR), X-RAY crystallography,
oxidoreductase; 2.69A {Candida parapsilosis}
Length = 279
Score = 222 bits (567), Expect = 1e-72
Identities = 62/254 (24%), Positives = 117/254 (46%), Gaps = 13/254 (5%)
Query: 1 MNFTGKVILVTGASSGIGAATALHLAKLDAKLAITGRNVEQLDKVSESCQSVSKNKPLVI 60
+ GKV VTG+S GIG A A A+ A +AI + +K ++
Sbjct: 30 FSLKGKVASVTGSSGGIGWAVAEAYAQAGADVAIWYNSHPADEKAEHLQKT-YGVHSKAY 88
Query: 61 QADLTSEEDTKRIIDTVVKHYQKLNVLVNNAGI--LEAGSIENTSLEQYDKIMNVNVRSI 118
+ +++ + + I K + ++V V NAG+ + I+ + + ++KI++V++ +
Sbjct: 89 KCNISDPKSVEETISQQEKDFGTIDVFVANAGVTWTQGPEIDVDNYDSWNKIISVDLNGV 148
Query: 119 YHLTMLAVPHLISTK-GNIVNVSSVNGLRSFPGVL--AYCVSKAAVDQFTSCTALELASK 175
Y+ + G+++ SS++G L Y +KAA A+E A
Sbjct: 149 YYCSHNIGKIFKKNGKGSLIITSSISGKIVNIPQLQAPYNTAKAACTHLAKSLAIEWAPF 208
Query: 176 GVRVNSVNPGVTLTNLHKNSGIDQQAYQNFLERSKETHALGRVGNPEEVAKAIAFLASDD 235
RVN+++PG T++ + + + + LGR G +E+ +LAS+
Sbjct: 209 A-RVNTISPGYIDTDI--TDFASKDMKAKWWQLT----PLGREGLTQELVGGYLYLASNA 261
Query: 236 ASFTTGEHLTVDGG 249
++FTTG + +DGG
Sbjct: 262 STFTTGSDVVIDGG 275
>4da9_A Short-chain dehydrogenase/reductase; structural genomics, protein
structure initiative, PSI-biology; 2.50A {Sinorhizobium
meliloti}
Length = 280
Score = 222 bits (567), Expect = 2e-72
Identities = 70/255 (27%), Positives = 115/255 (45%), Gaps = 13/255 (5%)
Query: 2 NFTGKVILVTGASSGIGAATALHLAKLDAKLAITG-RNVEQLDKVSESCQSVSKNKPLVI 60
V +VTG GIG A LA +AITG + E + V + + + +
Sbjct: 26 QKARPVAIVTGGRRGIGLGIARALAASGFDIAITGIGDAEGVAPVIAELSGLGA-RVIFL 84
Query: 61 QADLTSEEDTKRIIDTVVKHYQKLNVLVNNAGI--LEAGSIENTSLEQYDKIMNVNVRSI 118
+ADL + +D VV + +++ LVNNAGI + + E +D I+ VN+R
Sbjct: 85 RADLADLSSHQATVDAVVAEFGRIDCLVNNAGIASIVRDDFLDLKPENFDTIVGVNLRGT 144
Query: 119 YHLTMLAVPHLISTK----GNIVNVSSVNGLRSFPGVLAYCVSKAAVDQFTSCTALELAS 174
T + ++++ +I+N++SV+ + + P L YC+SKA + F+ AL LA
Sbjct: 145 VFFTQAVLKAMLASDARASRSIINITSVSAVMTSPERLDYCMSKAGLAAFSQGLALRLAE 204
Query: 175 KGVRVNSVNPGVTLTNLHKNSGIDQQAYQNFLERSKETHALGRVGNPEEVAKAIAFLASD 234
G+ V V PG+ +++ + R G PE++ +A LA
Sbjct: 205 TGIAVFEVRPGIIRSDMTAAVSGKYDG-----LIESGLVPMRRWGEPEDIGNIVAGLAGG 259
Query: 235 DASFTTGEHLTVDGG 249
F TG + DGG
Sbjct: 260 QFGFATGSVIQADGG 274
>2b4q_A Rhamnolipids biosynthesis 3-oxoacyl-[acyl- carrier-protein]
reductase; RHLG-NADP complex, oxidoreductase; HET: NAP;
2.30A {Pseudomonas aeruginosa}
Length = 276
Score = 222 bits (567), Expect = 2e-72
Identities = 72/254 (28%), Positives = 122/254 (48%), Gaps = 12/254 (4%)
Query: 2 NFTGKVILVTGASSGIGAATALHLAKLDAKLAITGRNVEQLDKVSESCQSVSKNKPLVIQ 61
+ G++ LVTG S GIG A L + A++ I R+ E + + I
Sbjct: 26 SLAGRIALVTGGSRGIGQMIAQGLLEAGARVFICARDAEACADTATRLSA--YGDCQAIP 83
Query: 62 ADLTSEEDTKRIIDTVVKHYQKLNVLVNNAGILEAGSIENTSLEQYDKIMNVNVRSIYHL 121
ADL+SE +R+ + + +L++LVNNAG ++E+ + ++K+M +NV S++
Sbjct: 84 ADLSSEAGARRLAQALGELSARLDILVNNAGTSWGAALESYPVSGWEKVMQLNVTSVFSC 143
Query: 122 TMLAVPHLIST-----KGNIVNVSSVNGLRSFPG-VLAYCVSKAAVDQFTSCTALELASK 175
+P L + ++N+ SV G+ + AY SKAA+ Q + A EL +
Sbjct: 144 IQQLLPLLRRSASAENPARVINIGSVAGISAMGEQAYAYGPSKAALHQLSRMLAKELVGE 203
Query: 176 GVRVNSVNPGVTLTNLHKNSGIDQQAYQNFLERSKETHALGRVGNPEEVAKAIAFLASDD 235
+ VN + PG + + ++ D QA + +GR G PEE+A LA
Sbjct: 204 HINVNVIAPGRFPSRMTRHIANDPQALEADSASI----PMGRWGRPEEMAALAISLAGTA 259
Query: 236 ASFTTGEHLTVDGG 249
++ TG + +DGG
Sbjct: 260 GAYMTGNVIPIDGG 273
>2a4k_A 3-oxoacyl-[acyl carrier protein] reductase;
reductase,hyperthermophIle, structural genomics, PSI,
protei structure initiative; 2.30A {Thermus
thermophilus} SCOP: c.2.1.2
Length = 263
Score = 221 bits (565), Expect = 2e-72
Identities = 79/254 (31%), Positives = 129/254 (50%), Gaps = 12/254 (4%)
Query: 2 NFTGKVILVTGASSGIGAATALHLAKLDAKLAITGRNVEQLDKVSESCQSVSKNKPLVIQ 61
+GK ILVTGA+SGIG A A+ A L R L + + ++ + + +
Sbjct: 3 RLSGKTILVTGAASGIGRAALDLFAREGASLVAVDREERLLAEAVAALEA----EAIAVV 58
Query: 62 ADLTSEEDTKRIIDTVVKHYQKLNVLVNNAGILEAGSIENTSLEQYDKIMNVNVRSIYHL 121
AD++ + + + ++ + +L+ + + AG+ + N LE ++K++ VN+ + +
Sbjct: 59 ADVSDPKAVEAVFAEALEEFGRLHGVAHFAGVAHSALSWNLPLEAWEKVLRVNLTGSFLV 118
Query: 122 TMLAVPHLISTKGNIVNVSSVNGLRSFPGVLAYCVSKAAVDQFTSCTALELASKGVRVNS 181
A L G++V SV GL G+ Y K V ALELA KGVRVN
Sbjct: 119 ARKAGEVLEE-GGSLVLTGSVAGL-GAFGLAHYAAGKLGVVGLARTLALELARKGVRVNV 176
Query: 182 VNPGVTLTNLHKNSGIDQQAYQNFLERSKETHALGRVGNPEEVAKAIAFLASDDASFTTG 241
+ PG+ T + +G+ A++ + LGR G PEEVA+A FL S+++++ TG
Sbjct: 177 LLPGLIQTPM--TAGLPPWAWEQEVGA----SPLGRAGRPEEVAQAALFLLSEESAYITG 230
Query: 242 EHLTVDGGRHAMCP 255
+ L VDGGR + P
Sbjct: 231 QALYVDGGRSIVGP 244
>2x9g_A PTR1, pteridine reductase; short chain dehydrogenase,
oxidoreductase; HET: NAP LYA; 1.10A {Trypanosoma brucei
brucei} PDB: 2x9n_A* 2x9v_A* 3bmc_A* 3bmd_A* 3bme_A*
3bmf_A* 3bmg_A* 3bmh_A* 3bmi_A* 3bmj_A* 3bmk_A* 3bml_A*
3bmm_A* 3bmn_A* 3bmo_A* 3bmq_A* 3bmr_A* 3gn1_A* 3gn2_A*
3jq6_A* ...
Length = 288
Score = 220 bits (562), Expect = 1e-71
Identities = 72/278 (25%), Positives = 118/278 (42%), Gaps = 32/278 (11%)
Query: 1 MNFTGKVILVTGASSGIGAATALHLAKLDAKLAITGR-NVEQLDKVSESCQSVSKNKPLV 59
+ +VTGA+ IG A A+ L + ++ I + E +++ N +V
Sbjct: 19 SHMEAPAAVVTGAAKRIGRAIAVKLHQTGYRVVIHYHNSAEAAVSLADELNKERSNTAVV 78
Query: 60 IQADLTSEE----DTKRIIDTVVKHYQKLNVLVNNAGI----------LEAGSIENTSLE 105
QADLT+ + II++ + + + +VLVNNA E S T
Sbjct: 79 CQADLTNSNVLPASCEEIINSCFRAFGRCDVLVNNASAFYPTPLVQGDHEDNSNGKTVET 138
Query: 106 QYDKIMNVNVRSIYHLT-------MLAVPHLISTKGNIVNVSSVNGLRSFPGVLAYCVSK 158
Q +++ N + + LT P+ S+ +IVN+ + Y + K
Sbjct: 139 QVAELIGTNAIAPFLLTMSFAQRQKGTNPNCTSSNLSIVNLCDAMVDQPCMAFSLYNMGK 198
Query: 159 AAVDQFTSCTALELASKGVRVNSVNPGVTLTNLHKNSGIDQQAYQNFLERSKETHALGR- 217
A+ T ALELA G+RVN V PGV+L + + ++ + LGR
Sbjct: 199 HALVGLTQSAALELAPYGIRVNGVAPGVSLLPVAMG--------EEEKDKWRRKVPLGRR 250
Query: 218 VGNPEEVAKAIAFLASDDASFTTGEHLTVDGGRHAMCP 255
+ E++A A+ FL S A + TG + VDGG +
Sbjct: 251 EASAEQIADAVIFLVSGSAQYITGSIIKVDGGLS-LVH 287
>4g81_D Putative hexonate dehydrogenase; enzyme function initiative, EFI,
structural genomics, dehydr oxidoreductase; 1.90A
{Salmonella enterica subsp}
Length = 255
Score = 218 bits (559), Expect = 1e-71
Identities = 63/248 (25%), Positives = 112/248 (45%), Gaps = 7/248 (2%)
Query: 4 TGKVILVTGASSGIGAATALHLAKLDAKLAITGRNVEQLDKVSESCQSVSKNKPLVIQAD 63
TGK LVTG++ G+G A A LA A++ + L + ++ + D
Sbjct: 8 TGKTALVTGSARGLGFAYAEGLAAAGARVILNDIRATLLAESVDTLTRKGY-DAHGVAFD 66
Query: 64 LTSEEDTKRIIDTVVKHYQKLNVLVNNAGILEAGSIENTSLEQYDKIMNVNVRSIYHLTM 123
+T E + + +++L+NNAGI + LE + K+++ N+ S + ++
Sbjct: 67 VTDELAIEAAFSKLDAEGIHVDILINNAGIQYRKPMVELELENWQKVIDTNLTSAFLVSR 126
Query: 124 LAVPHLISTK--GNIVNVSSVNGLRSFPGVLAYCVSKAAVDQFTSCTALELASKGVRVNS 181
A +I+ G I+N+ S+ + P V Y +K + T A E A ++ N+
Sbjct: 127 SAAKRMIARNSGGKIINIGSLTSQAARPTVAPYTAAKGGIKMLTCSMAAEWAQFNIQTNA 186
Query: 182 VNPGVTLTNLHKNSGIDQQAYQNFLERSKETHALGRVGNPEEVAKAIAFLASDDASFTTG 241
+ PG LT+++ D+Q + R G PEE+ FL+S + + G
Sbjct: 187 IGPGYILTDMNTALIEDKQFDSWVKSST----PSQRWGRPEELIGTAIFLSSKASDYING 242
Query: 242 EHLTVDGG 249
+ + VDGG
Sbjct: 243 QIIYVDGG 250
>1vl8_A Gluconate 5-dehydrogenase; TM0441, structural genomics, JCSG
structure initiative, PSI, joint center for structural
GENO oxidoreductase; HET: NAP; 2.07A {Thermotoga
maritima} SCOP: c.2.1.2
Length = 267
Score = 218 bits (558), Expect = 3e-71
Identities = 72/248 (29%), Positives = 126/248 (50%), Gaps = 6/248 (2%)
Query: 4 TGKVILVTGASSGIGAATALHLAKLDAKLAITGRNVEQLDKVSESCQSVSKNKPLVIQAD 63
G+V LVTG S G+G A LA+ + + RN+E+ + ++ + + + D
Sbjct: 20 RGRVALVTGGSRGLGFGIAQGLAEAGCSVVVASRNLEEASEAAQKLTEKYGVETMAFRCD 79
Query: 64 LTSEEDTKRIIDTVVKHYQKLNVLVNNAGILEAGSIENTSLEQYDKIMNVNVRSIYHLTM 123
+++ E+ K++++ V + + KL+ +VN AGI E L+++ +++ VN+ Y++
Sbjct: 80 VSNYEEVKKLLEAVKEKFGKLDTVVNAAGINRRHPAEEFPLDEFRQVIEVNLFGTYYVCR 139
Query: 124 LAVPHLISTK-GNIVNVSSVNGLR-SFPGVLAYCVSKAAVDQFTSCTALELASKGVRVNS 181
A L + +I+N+ S+ + P + AY SK V T A E G+RVN
Sbjct: 140 EAFSLLRESDNPSIINIGSLTVEEVTMPNISAYAASKGGVASLTKALAKEWGRYGIRVNV 199
Query: 182 VNPGVTLTNLHKNSGIDQQAYQNFLERSKETHALGRVGNPEEVAKAIAFLASDDASFTTG 241
+ PG T + + D + L+R LGR G PE++ FLAS++A + TG
Sbjct: 200 IAPGWYRTKMTEAVFSDPEKLDYMLKRI----PLGRTGVPEDLKGVAVFLASEEAKYVTG 255
Query: 242 EHLTVDGG 249
+ + VDGG
Sbjct: 256 QIIFVDGG 263
>3pgx_A Carveol dehydrogenase; structural genomics, seattle structural
genomics center for infectious disease, ssgcid; HET:
NAD; 1.85A {Mycobacterium avium}
Length = 280
Score = 218 bits (558), Expect = 3e-71
Identities = 66/265 (24%), Positives = 115/265 (43%), Gaps = 17/265 (6%)
Query: 2 NFTGKVILVTGASSGIGAATALHLAKLDAKLAITGRNVEQLDKVSESCQSVSKNKPLV-- 59
+ G+V +TGA+ G G + A+ LA A + V+ + S
Sbjct: 12 SLQGRVAFITGAARGQGRSHAVRLAAEGADIIACDICAPVSASVTYAPASPEDLDETARL 71
Query: 60 ----------IQADLTSEEDTKRIIDTVVKHYQKLNVLVNNAGILEAGSIENTSLEQYDK 109
D+ + + ++ ++ + +L+V+V NAG+L G + + EQ+D
Sbjct: 72 VEDQGRKALTRVLDVRDDAALRELVADGMEQFGRLDVVVANAGVLSWGRVWELTDEQWDT 131
Query: 110 IMNVNVRSIYHLTMLAVPHLISTK--GNIVNVSSVNGLRSFPGVLAYCVSKAAVDQFTSC 167
++ VN+ + VP +I G+IV VSS GL++ PG Y SK + T+
Sbjct: 132 VIGVNLTGTWRTLRATVPAMIEAGNGGSIVVVSSSAGLKATPGNGHYSASKHGLTALTNT 191
Query: 168 TALELASKGVRVNSVNPGVTLTNLHKNSGIDQQAYQN---FLERSKETHALGRVGNPEEV 224
A+EL G+RVNS++P T + + + + ++ +EV
Sbjct: 192 LAIELGEYGIRVNSIHPYSVETPMIEPEAMMEIFARHPSFVHSFPPMPVQPNGFMTADEV 251
Query: 225 AKAIAFLASDDASFTTGEHLTVDGG 249
A +A+LA D + TG + VD G
Sbjct: 252 ADVVAWLAGDGSGTLTGTQIPVDKG 276
>3uve_A Carveol dehydrogenase ((+)-trans-carveol dehydrog; ssgcid,
structural genomics, seattle structural genomics CEN
infectious disease; HET: NAD PG4; 1.55A {Mycobacterium
avium} PDB: 3uwr_A*
Length = 286
Score = 217 bits (554), Expect = 2e-70
Identities = 68/275 (24%), Positives = 125/275 (45%), Gaps = 29/275 (10%)
Query: 3 FTGKVILVTGASSGIGAATALHLAKLDAKLAIT----------------GRNVEQLDKVS 46
GKV VTGA+ G G + A+ LA+ A + E L + +
Sbjct: 9 VEGKVAFVTGAARGQGRSHAVRLAQEGADIIAVDICKPIRAGVVDTAIPASTPEDLAETA 68
Query: 47 ESCQSVSKNKPLVIQADLTSEEDTKRIIDTVVKHYQKLNVLVNNAGIL-EAGSIENTSLE 105
+ + ++ + + + D+ + K +D+ V+ +L+++V NAGI +++ TS E
Sbjct: 69 DLVKGHNR-RIVTAEVDVRDYDALKAAVDSGVEQLGRLDIIVANAGIGNGGDTLDKTSEE 127
Query: 106 QYDKIMNVNVRSIYHLTMLAVPHLISTK--GNIVNVSSVNGLRSFPGVLAYCVSKAAVDQ 163
+ +++++N+ ++ VPH+I+ G+I+ SSV GL+++P Y +K V
Sbjct: 128 DWTEMIDINLAGVWKTVKAGVPHMIAGGRGGSIILTSSVGGLKAYPHTGHYVAAKHGVVG 187
Query: 164 FTSCTALELASKGVRVNSVNPGVTLTNLHKNSGIDQQAYQNFLERSKETHALG------- 216
+EL +RVNSV+P T + N G + + + A
Sbjct: 188 LMRAFGVELGQHMIRVNSVHPTHVKTPMLHNEGTFKMFRPDLENPGPDDMAPICQMFHTL 247
Query: 217 --RVGNPEEVAKAIAFLASDDASFTTGEHLTVDGG 249
P +++ A+ F ASD+A + TG L +D G
Sbjct: 248 PIPWVEPIDISNAVLFFASDEARYITGVTLPIDAG 282
>4dyv_A Short-chain dehydrogenase/reductase SDR; structural genomics,
PSI-biology, NEW YORK structural genomi research
consortium, nysgrc; 1.80A {Xanthobacter autotrophicus}
Length = 272
Score = 216 bits (552), Expect = 2e-70
Identities = 51/240 (21%), Positives = 104/240 (43%), Gaps = 15/240 (6%)
Query: 2 NFTGKVILVTGASSGIGAATALHLAKLDAKLAITGRNVEQLDKVSESCQSVSKNKPLVIQ 61
K+ +VTGA SG+G A A+ LA +A+ GR ++ L + + L +
Sbjct: 25 KTGKKIAIVTGAGSGVGRAVAVALAGAGYGVALAGRRLDALQETAAEIGD----DALCVP 80
Query: 62 ADLTSEEDTKRIIDTVVKHYQKLNVLVNNAGI-LEAGSIENTSLEQYDKIMNVNVRSIYH 120
D+T + + + V+ + +++VL NNAG A +E+ + Q+ ++++ N+ +
Sbjct: 81 TDVTDPDSVRALFTATVEKFGRVDVLFNNAGTGAPAIPMEDLTFAQWKQVVDTNLTGPFL 140
Query: 121 LTMLAVPHLISTK---GNIVNVSSVNGLRSFPGVLAYCVSKAAVDQFTSCTALELASKGV 177
T A + + + G I+N S++ P Y +K A+ T T+L+ +
Sbjct: 141 CTQEAFRVMKAQEPRGGRIINNGSISATSPRPYSAPYTATKHAITGLTKSTSLDGRVHDI 200
Query: 178 RVNSVNPGVTLTNLHKNSGIDQQAYQNFLERSKETHALGRVGNPEEVAKAIAFLASDDAS 237
++ G T + + ++ + + V + VA A+ ++AS
Sbjct: 201 ACGQIDIGNADTPMAQKMKAGV-------PQADLSIKVEPVMDVAHVASAVVYMASLPLD 253
>3gdg_A Probable NADP-dependent mannitol dehydrogenase; rossmann fold,
beta-alpha-beta motifs, open twisted sheet, A NADP,
oxidoreductase; 2.30A {Cladosporium herbarum} PDB:
3gdf_A
Length = 267
Score = 214 bits (548), Expect = 9e-70
Identities = 65/262 (24%), Positives = 121/262 (46%), Gaps = 16/262 (6%)
Query: 1 MNFTGKVILVTGAS--SGIGAATALHLAKLDAKLAITG-RNVEQLDKVSESCQSVSKNKP 57
++ GKV++VTGAS G+G A A++ A +AIT + ++ + + K
Sbjct: 16 LSLKGKVVVVTGASGPKGMGIEAARGCAEMGAAVAITYASRAQGAEENVKELEKTYGIKA 75
Query: 58 LVIQADLTSEEDTKRIIDTVVKHYQKLNVLVNNAGILEAGSIENTSLEQYDKIMNVNVRS 117
+ + S E ++++ VV + +++ + NAG I + S+E ++ ++ V++
Sbjct: 76 KAYKCQVDSYESCEKLVKDVVADFGQIDAFIANAGATADSGILDGSVEAWNHVVQVDLNG 135
Query: 118 IYHLTMLAVPHLISTK-GNIVNVSSVNGLRS--FPGVLAYCVSKAAVDQFTSCTALELAS 174
+H H G++V +S++G + +Y V+KA A E
Sbjct: 136 TFHCAKAVGHHFKERGTGSLVITASMSGHIANFPQEQTSYNVAKAGCIHMARSLANEWRD 195
Query: 175 KGVRVNSVNPGVTLTNLHKNSGIDQQAYQNFLERSKETHALGRVGNPEEVAKAIAFLASD 234
RVNS++PG T L + + ++ Q + +GR G +E+ A + ASD
Sbjct: 196 FA-RVNSISPGYIDTGL--SDFVPKETQQLWHSMI----PMGRDGLAKELKGAYVYFASD 248
Query: 235 DASFTTGEHLTVDGGRHAMCPR 256
+++TTG L +DGG R
Sbjct: 249 ASTYTTGADLLIDGG---YTTR 267
>3nyw_A Putative oxidoreductase; fatty acid synthesis,3-oxoacyl-[ACP]
reductase, NADP+ bindin rossman fold, PSI-II, nysgxrc;
2.16A {Bacteroides thetaiotaomicron}
Length = 250
Score = 213 bits (546), Expect = 1e-69
Identities = 56/239 (23%), Positives = 102/239 (42%), Gaps = 18/239 (7%)
Query: 1 MNFTGKVILVTGASSGIGAATALHLAKLDAKLAITGRNVEQLDKVSESCQSVSKN--KPL 58
+ + ++TGAS GIGA A LA ++ + R+ + L+KV + +K+ +P+
Sbjct: 3 LEKQKGLAIITGASQGIGAVIAAGLATDGYRVVLIARSKQNLEKVHDEIMRSNKHVQEPI 62
Query: 59 VIQADLTSEEDTKRIIDTVVKHYQKLNVLVNNAGILEAGSIENTSLEQYDKIMNVNVRSI 118
V+ D+T I + + Y +++LVN A + GS+ ++ + KIM +NV +
Sbjct: 63 VLPLDITDCTKADTEIKDIHQKYGAVDILVNAAAMFMDGSLSE-PVDNFRKIMEINVIAQ 121
Query: 119 YHLTMLAVPHLISTK-GNIVNVSSVNGLRSFPGVLAYCVSKAAVDQFTSCTALELASKGV 177
Y + + K G I NV+S F Y +K A+ ELA G+
Sbjct: 122 YGILKTVTEIMKVQKNGYIFNVASRAAKYGFADGGIYGSTKFALLGLAESLYRELAPLGI 181
Query: 178 RVNSVNPGVTLTNLHKNSGIDQQAYQNFLERSKETHALGRVGNPEEVAKAIAFLASDDA 236
RV ++ PG T + +++ + P+++ I L +
Sbjct: 182 RVTTLCPGWVNT--------------DMAKKAGTPFKDEEMIQPDDLLNTIRCLLNLSE 226
>1zmt_A Haloalcohol dehalogenase HHEC; halohydrin dehalogenase, epoxide
catalysis, enantioselectivity, lyase; HET: RNO; 1.70A
{Agrobacterium tumefaciens} SCOP: c.2.1.2 PDB: 1pwz_A
1px0_A* 1pwx_A* 1zo8_A*
Length = 254
Score = 213 bits (545), Expect = 1e-69
Identities = 50/248 (20%), Positives = 98/248 (39%), Gaps = 11/248 (4%)
Query: 6 KVILVTGASSGIGAATALHLAKLDAKLAITGRNVEQLDKVSESCQSVSKNKPLVIQADLT 65
+VT G +AL L++ +A + +Q D++ Q
Sbjct: 2 STAIVTNVKHFGGMGSALRLSEAGHTVACHDESFKQKDELEAF-------AETYPQLKPM 54
Query: 66 SEEDTKRIIDTVVKHYQKLNVLVNNAGIL-EAGSIENTSLEQYDKIMNVNVRSIYHLTML 124
SE++ +I+ V Y +++VLV+N E I+ ++E Y + + L
Sbjct: 55 SEQEPAELIEAVTSAYGQVDVLVSNDIFAPEFQPIDKYAVEDYRGAVEALQIRPFALVNA 114
Query: 125 AVPHLISTK-GNIVNVSSVNGLRSFPGVLAYCVSKAAVDQFTSCTALELASKGVRVNSVN 183
+ K G+I+ ++S + + Y ++A + + EL + V ++
Sbjct: 115 VASQMKKRKSGHIIFITSATPFGPWKELSTYTSARAGACTLANALSKELGEYNIPVFAIG 174
Query: 184 PGVTLTNLHKNSGIDQQAYQN--FLERSKETHALGRVGNPEEVAKAIAFLASDDASFTTG 241
P + + N + K+ AL R+G +E+ + +AFLAS + TG
Sbjct: 175 PNYLHSEDSPYFYPTEPWKTNPEHVAHVKKVTALQRLGTQKELGELVAFLASGSCDYLTG 234
Query: 242 EHLTVDGG 249
+ + GG
Sbjct: 235 QVFWLAGG 242
>2ekp_A 2-deoxy-D-gluconate 3-dehydrogenase; structural genomics, NPPSFA,
nation project on protein structural and functional
analyses; HET: NAD; 1.15A {Thermus thermophilus} PDB:
1x1e_A* 2ekq_A
Length = 239
Score = 212 bits (542), Expect = 3e-69
Identities = 67/247 (27%), Positives = 113/247 (45%), Gaps = 17/247 (6%)
Query: 6 KVILVTGASSGIGAATALHLAKLDAKLAITGRNVEQLDKVSESCQSVSKNKPLVIQADLT 65
+ LVTG S GIG A A L ++AI RN E+ + + + + DL
Sbjct: 3 RKALVTGGSRGIGRAIAEALVARGYRVAIASRNPEEAAQSLGA---------VPLPTDL- 52
Query: 66 SEEDTKRIIDTVVKHYQKLNVLVNNAGILEAGSIENTSLEQYDKIMNVNVRSIYHLTMLA 125
++D K ++ ++ L+VLV+ A + S E++ +++ +++ + L A
Sbjct: 53 EKDDPKGLVKRALEALGGLHVLVHAAAVNVRKPALELSYEEWRRVLYLHLDVAFLLAQAA 112
Query: 126 VPHLISTK-GNIVNVSSVNGLRS--FPGVLAYCVSKAAVDQFTSCTALELASKGVRVNSV 182
PH+ G ++ + SV + + AY +K A+ T A E A G+RVN +
Sbjct: 113 APHMAEAGWGRVLFIGSVTTFTAGGPVPIPAYTTAKTALLGLTRALAKEWARLGIRVNLL 172
Query: 183 NPGVTLTNLHKNSGIDQQAYQNFLERSKETHALGRVGNPEEVAKAIAFLASDDASFTTGE 242
PG T + + Y+ R +GR PEE+A+ A L D+A + TG+
Sbjct: 173 CPGYVETEFTLPLRQNPELYEPITARI----PMGRWARPEEIARVAAVLCGDEAEYLTGQ 228
Query: 243 HLTVDGG 249
+ VDGG
Sbjct: 229 AVAVDGG 235
>3t7c_A Carveol dehydrogenase; structural genomics, seattle structural
genomics center for infectious disease, ssgcid; HET:
NAD; 1.95A {Mycobacterium avium}
Length = 299
Score = 214 bits (546), Expect = 4e-69
Identities = 69/271 (25%), Positives = 124/271 (45%), Gaps = 25/271 (9%)
Query: 3 FTGKVILVTGASSGIGAATALHLAKLDAKLAIT------------GRNVEQLDKVSESCQ 50
GKV +TGA+ G G + A+ LA+ A + + L + +
Sbjct: 26 VEGKVAFITGAARGQGRSHAITLAREGADIIAIDVCKQLDGVKLPMSTPDDLAETVRQVE 85
Query: 51 SVSKNKPLVIQADLTSEEDTKRIIDTVVKHYQKLNVLVNNAGILEAGS-IENTSLEQYDK 109
++ + + + Q D+ + + +D V +L++++ NA + G+ + + +
Sbjct: 86 ALGR-RIIASQVDVRDFDAMQAAVDDGVTQLGRLDIVLANAALASEGTRLNRMDPKTWRD 144
Query: 110 IMNVNVRSIYHLTMLAVPHLISTK--GNIVNVSSVNGLRSFPGVLAYCVSKAAVDQFTSC 167
+++VN+ + +A+PH+++ K G+IV SS+ GLR + Y SK +
Sbjct: 145 MIDVNLNGAWITARVAIPHIMAGKRGGSIVFTSSIGGLRGAENIGNYIASKHGLHGLMRT 204
Query: 168 TALELASKGVRVNSVNPGVTLTNLHKN--------SGIDQQAYQNFLERSKETHALG-RV 218
ALEL + +RVN V P T + N ++ ++F S++ H L
Sbjct: 205 MALELGPRNIRVNIVCPSSVATPMLLNEPTYRMFRPDLENPTVEDFQVASRQMHVLPIPY 264
Query: 219 GNPEEVAKAIAFLASDDASFTTGEHLTVDGG 249
P +++ AI FL SDDA + TG L VDGG
Sbjct: 265 VEPADISNAILFLVSDDARYITGVSLPVDGG 295
>2dkn_A 3-alpha-hydroxysteroid dehydrogenase; oxidoreductase, rossmann
fold; HET: NAI; 1.80A {Pseudomonas SP}
Length = 255
Score = 212 bits (541), Expect = 6e-69
Identities = 69/256 (26%), Positives = 98/256 (38%), Gaps = 16/256 (6%)
Query: 6 KVILVTGASSGIGAATALHLAKLDAKLAITGRNVEQLDKVSESCQSVSKNKPLVIQADLT 65
VI +TG++SGIGAA LA+ + R ++ + + A L
Sbjct: 2 SVIAITGSASGIGAALKELLARAGHTVIGIDRGQADIEADLSTPGGRE----TAVAAVLD 57
Query: 66 SEEDTKRI-----IDTVVKHYQKLNVLVNNAGI--LEAGSIENTSLEQYDKIMNVNVRSI 118
V L V VN G+ L G E S Q + V +
Sbjct: 58 RCGGVLDGLVCCAGVGVTAANSGLVVAVNYFGVSALLDGLAEALSRGQQPAAVIVGSIAA 117
Query: 119 YHLTMLAVPHLISTK-GNIVNVSSVNGLRSFPGVLAYCVSKAAVDQFTSCTALELASKGV 177
+P + + G+ + + + AY SK AV ++ A +GV
Sbjct: 118 TQPGAAELPMVEAMLAGDEARAIELAEQQGQTHL-AYAGSKYAVTCLARRNVVDWAGRGV 176
Query: 178 RVNSVNPGVTLTNLHKNSGIDQQAYQNFLERSKETHALGRVGNPEEVAKAIAFLASDDAS 237
R+N V PG T L + S D + ++ LGR P EVA+AIAFL AS
Sbjct: 177 RLNVVAPGAVETPLLQASKADPRYGESTRRF---VAPLGRGSEPREVAEAIAFLLGPQAS 233
Query: 238 FTTGEHLTVDGGRHAM 253
F G L VDGG A+
Sbjct: 234 FIHGSVLFVDGGMDAL 249
>2rhc_B Actinorhodin polyketide ketoreductase; oxidoreductase,
combinatorial biosynthesis, short chain
dehydrogenase/reductase; HET: NAP EMO; 2.10A
{Streptomyces coelicolor} SCOP: c.2.1.2 PDB: 2rh4_A*
1w4z_A* 3csd_B* 3qrw_A* 3ri3_B* 2rhr_B* 1x7g_A* 1x7h_A*
1xr3_A*
Length = 277
Score = 212 bits (543), Expect = 7e-69
Identities = 71/257 (27%), Positives = 116/257 (45%), Gaps = 9/257 (3%)
Query: 1 MNFTGKVILVTGASSGIGAATALHLAKLDAKLAITGRNVEQLDKVSESCQSVSKNKPLVI 60
+V LVTGA+SGIG A L K ++ + R E L + + + +
Sbjct: 18 ATQDSEVALVTGATSGIGLEIARRLGKEGLRVFVCARGEEGLRTTLKELRE-AGVEADGR 76
Query: 61 QADLTSEEDTKRIIDTVVKHYQKLNVLVNNAGILEAGSIENTSLEQYDKIMNVNVRSIYH 120
D+ S + + ++ VV+ Y ++VLVNNAG G+ + E + ++ N+ ++
Sbjct: 77 TCDVRSVPEIEALVAAVVERYGPVDVLVNNAGRPGGGATAELADELWLDVVETNLTGVFR 136
Query: 121 LTMLAVPHLISTK---GNIVNVSSVNGLRSFPGVLAYCVSKAAVDQFTSCTALELASKGV 177
+T + + G IVN++S G + Y SK V FT LELA G+
Sbjct: 137 VTKQVLKAGGMLERGTGRIVNIASTGGKQGVVHAAPYSASKHGVVGFTKALGLELARTGI 196
Query: 178 RVNSVNPG-----VTLTNLHKNSGIDQQAYQNFLERSKETHALGRVGNPEEVAKAIAFLA 232
VN+V PG + + S I + + + +R +GR P EVA+ +A+L
Sbjct: 197 TVNAVCPGFVETPMAASVREHYSDIWEVSTEEAFDRITARVPIGRYVQPSEVAEMVAYLI 256
Query: 233 SDDASFTTGEHLTVDGG 249
A+ T + L V GG
Sbjct: 257 GPGAAAVTAQALNVCGG 273
>3pk0_A Short-chain dehydrogenase/reductase SDR; ssgcid, structural
genomics, seattle structural genomics CEN infectious
disease; 1.75A {Mycobacterium smegmatis}
Length = 262
Score = 212 bits (541), Expect = 7e-69
Identities = 67/250 (26%), Positives = 118/250 (47%), Gaps = 8/250 (3%)
Query: 2 NFTGKVILVTGASSGIGAATALHLAKLDAKLAITGRNVEQLDKVSESCQSVSKNKPLVIQ 61
+ G+ ++VTG + GIG A A+ A +A+ GR+ +D + K + +Q
Sbjct: 7 DLQGRSVVVTGGTKGIGRGIATVFARAGANVAVAGRSTADIDACVADLDQLGSGKVIGVQ 66
Query: 62 ADLTSEEDTKRIIDTVVKHYQKLNVLVNNAGILEAGSIENTSLEQYDKIMNVNVRSIYHL 121
D++ + V+ + ++V+ NAG+ + + EQ + I VNV ++
Sbjct: 67 TDVSDRAQCDALAGRAVEEFGGIDVVCANAGVFPDAPLATMTPEQLNGIFAVNVNGTFYA 126
Query: 122 TMLAVPHLISTK-GNIVNVSSVNGLRS-FPGVLAYCVSKAAVDQFTSCTALELASKGVRV 179
+ LI++ G +V SS+ G + +PG Y +KAA F A+ELA + V
Sbjct: 127 VQACLDALIASGSGRVVLTSSITGPITGYPGWSHYGATKAAQLGFMRTAAIELAPHKITV 186
Query: 180 NSVNPGVTLTNLHKNSGIDQQAYQNFLERSKETHALGRVGNPEEVAKAIAFLASDDASFT 239
N++ PG +T +G + + G +G PE++ AFLA+ +A +
Sbjct: 187 NAIMPGNIMTEGLLENGEEYI------ASMARSIPAGALGTPEDIGHLAAFLATKEAGYI 240
Query: 240 TGEHLTVDGG 249
TG+ + VDGG
Sbjct: 241 TGQAIAVDGG 250
>3orf_A Dihydropteridine reductase; alpha-beta-alpha sandwich, rossmann
fold, oxidoreductase (AC NADH), NADH binding,
oxidoreductase; HET: NAD; 2.16A {Dictyostelium
discoideum}
Length = 251
Score = 211 bits (539), Expect = 1e-68
Identities = 43/253 (16%), Positives = 77/253 (30%), Gaps = 32/253 (12%)
Query: 1 MNFTGKVILVTGASSGIGAATALHLAKLDAKLAITGRNVEQLDKVSESCQSVSKNKPLVI 60
+ K ILV G S +GA S
Sbjct: 18 GSHMSKNILVLGGSGALGAEVVKFFKSKSWNTISIDFRENPNADHS-------------F 64
Query: 61 QADLTSEEDTKRIIDTVVKHYQKLNVLVNNAGILEAGS-IENTSLEQYDKIMNVNVRSIY 119
+ EE+ K +I+ + K++ V AG G+ + L+ ++++N+ S +
Sbjct: 65 TIKDSGEEEIKSVIEKINSKSIKVDTFVCAAGGWSGGNASSDEFLKSVKGMIDMNLYSAF 124
Query: 120 HLTMLAVPHLISTKGNIVNVSSVNGLRSFPGVLAYCVSKAAVDQFTSCTALELA--SKGV 177
+ L + G V + L G++AY +KAA A E G
Sbjct: 125 ASAHIGAKLL-NQGGLFVLTGASAALNRTSGMIAYGATKAATHHIIKDLASENGGLPAGS 183
Query: 178 RVNSVNPGVTLTNLHKNSGIDQQAYQNFLERSKETHALGRVGNPEEVAKAI-AFLASDDA 236
+ P T ++ D EVA+ + + + D+
Sbjct: 184 TSLGILPVTLDTPTNRKYMSDAN--------------FDDWTPLSEVAEKLFEWSTNSDS 229
Query: 237 SFTTGEHLTVDGG 249
T G + +
Sbjct: 230 RPTNGSLVKFETK 242
>3sju_A Keto reductase; short-chain dehydrogenase, oxidoreductase; HET:
NDP; 2.40A {Streptomyces griseoruber}
Length = 279
Score = 211 bits (539), Expect = 3e-68
Identities = 66/254 (25%), Positives = 108/254 (42%), Gaps = 9/254 (3%)
Query: 4 TGKVILVTGASSGIGAATALHLAKLDAKLAITGRNVEQLDKVSESCQSVSKNKPLVIQAD 63
+ VTG SSGIG A A LA + R+ + + + ++ + + D
Sbjct: 23 RPQTAFVTGVSSGIGLAVARTLAARGIAVYGCARDAKNVSAAVDGLRA-AGHDVDGSSCD 81
Query: 64 LTSEEDTKRIIDTVVKHYQKLNVLVNNAGILEAGSIENTSLEQYDKIMNVNVRSIYHLTM 123
+TS ++ + V+ + + +LVN+AG G + + +++ N+ ++ +T
Sbjct: 82 VTSTDEVHAAVAAAVERFGPIGILVNSAGRNGGGETADLDDALWADVLDTNLTGVFRVTR 141
Query: 124 LAVPHLISTK---GNIVNVSSVNGLRSFPGVLAYCVSKAAVDQFTSCTALELASKGVRVN 180
+ + G IVN++S G + Y SK V FT ELA G+ VN
Sbjct: 142 EVLRAGGMREAGWGRIVNIASTGGKQGVMYAAPYTASKHGVVGFTKSVGFELAKTGITVN 201
Query: 181 SVNPGVTLTNL-----HKNSGIDQQAYQNFLERSKETHALGRVGNPEEVAKAIAFLASDD 235
+V PG T + + Q ER LGR PEEVA + +L +D
Sbjct: 202 AVCPGYVETPMAERVREGYARHWGVTEQEVHERFNAKIPLGRYSTPEEVAGLVGYLVTDA 261
Query: 236 ASFTTGEHLTVDGG 249
A+ T + L V GG
Sbjct: 262 AASITAQALNVCGG 275
>3pxx_A Carveol dehydrogenase; structural genomics, seattle structural
genomics center for infectious disease, ssgcid, NAD,
tuberculosis; HET: NAD; 2.00A {Mycobacterium avium}
Length = 287
Score = 210 bits (537), Expect = 7e-68
Identities = 63/279 (22%), Positives = 115/279 (41%), Gaps = 36/279 (12%)
Query: 3 FTGKVILVTGASSGIGAATALHLAKLDAKLAIT------------GRNVEQLDKVSESCQ 50
KV+LVTG + G G + A+ LA+ A + + L++ +
Sbjct: 8 VQDKVVLVTGGARGQGRSHAVKLAEEGADIILFDICHDIETNEYPLATSRDLEEAGLEVE 67
Query: 51 SVSKNKPLVIQADLTSEEDTKRIIDTVVKHYQKLNVLVNNAGILEAGSIENTSLEQYDKI 110
+ K + D+ R + V + KL+V+V NAGI G + ++ +
Sbjct: 68 KTGR-KAYTAEVDVRDRAAVSRELANAVAEFGKLDVVVANAGICPLG--AHLPVQAFADA 124
Query: 111 MNVNVRSIYHLTMLAVPHLISTKGNIVNVSSVNGLR-----------SFPGVLAYCVSKA 159
+V+ + + A+P+L S +I+ SV GL PG Y +K
Sbjct: 125 FDVDFVGVINTVHAALPYLTS-GASIITTGSVAGLIAAAQPPGAGGPQGPGGAGYSYAKQ 183
Query: 160 AVDQFTSCTALELASKGVRVNSVNPGVTLTNLHKNSGI--------DQQAYQNFLERSKE 211
VD +T A +LA + +R N ++P T++ ++ + + + + L
Sbjct: 184 LVDSYTLQLAAQLAPQSIRANVIHPTNVNTDMLNSAPMYRQFRPDLEAPSRADALLAFPA 243
Query: 212 THALG-RVGNPEEVAKAIAFLASDDASFTTGEHLTVDGG 249
A+ +++ A+ FLASD++ + TG VD G
Sbjct: 244 MQAMPTPYVEASDISNAVCFLASDESRYVTGLQFKVDAG 282
>3rwb_A TPLDH, pyridoxal 4-dehydrogenase; short chain
dehydrogenase/reductase, 4-pyridoxola NAD+,
oxidoreductase; HET: NAD 4PL; 1.70A {Mesorhizobium loti}
PDB: 3ndr_A* 3nug_A*
Length = 247
Score = 208 bits (532), Expect = 1e-67
Identities = 71/249 (28%), Positives = 117/249 (46%), Gaps = 11/249 (4%)
Query: 3 FTGKVILVTGASSGIGAATALHLAKLDAKLAITGRNVEQLDKVSESCQSVSKNKPLVIQA 62
GK LVTGA+ GIG A A LA A + ++ N E + S K I A
Sbjct: 4 LAGKTALVTGAAQGIGKAIAARLAADGATVIVSDINAEGAKAAAASIGK----KARAIAA 59
Query: 63 DLTSEEDTKRIIDTVVKHYQKLNVLVNNAGILEAGSIENTSLEQYDKIMNVNVRSIYHLT 122
D++ K + + +++LVNNA I+ + ++ L+ + KI++VN+ + +T
Sbjct: 60 DISDPGSVKALFAEIQALTGGIDILVNNASIVPFVAWDDVDLDHWRKIIDVNLTGTFIVT 119
Query: 123 MLAVPHLISTK--GNIVNVSSVNGLRSFPGVLAYCVSKAAVDQFTSCTALELASKGVRVN 180
+ + G +++++S P + AY +K V FT A EL + N
Sbjct: 120 RAGTDQMRAAGKAGRVISIASNTFFAGTPNMAAYVAAKGGVIGFTRALATELGKYNITAN 179
Query: 181 SVNPGVTLTNLHKNSGIDQQAYQNFLERSKETHALGRVGNPEEVAKAIAFLASDDASFTT 240
+V PG+ ++ K S ++ + A+ G PE +A ++FLASDDA + T
Sbjct: 180 AVTPGLIESDGVKASPHNEAF-----GFVEMLQAMKGKGQPEHIADVVSFLASDDARWIT 234
Query: 241 GEHLTVDGG 249
G+ L VD G
Sbjct: 235 GQTLNVDAG 243
>1fjh_A 3alpha-hydroxysteroid dehydrogenase/carbonyl reductase; short chain
dehydrogenase, SDR, xenobiotic, metyrapone,
oligomerisation; 1.68A {Comamonas testosteroni} SCOP:
c.2.1.2 PDB: 1fk8_A*
Length = 257
Score = 208 bits (532), Expect = 1e-67
Identities = 65/278 (23%), Positives = 105/278 (37%), Gaps = 58/278 (20%)
Query: 6 KVILVTGASSGIGAATALHLAKLDAKLAITGRNVEQLDKVSESCQSVSKNKPLVIQADLT 65
+I+++G ++GIGAAT L ++ ++ ADL+
Sbjct: 2 SIIVISGCATGIGAATRKVLEAAGHQIVGIDIRDAEV------------------IADLS 43
Query: 66 SEEDTKR-IIDTVVKHYQKLNVLVNNAGILEAGSIENTSLEQYDKIMNVNVRSIYHLTML 124
+ E K+ I D + K + ++ LV AG+ + +++VN L
Sbjct: 44 TAEGRKQAIADVLAKCSKGMDGLVLCAGL-------GPQTKVLGNVVSVNYFGATELMDA 96
Query: 125 AVPHLI-STKGNIVNVSSVNGLR----------------------------SFPGVLAYC 155
+P L + V +SSV G LAY
Sbjct: 97 FLPALKKGHQPAAVVISSVASAHLAFDKNPLALALEAGEEAKARAIVEHAGEQGGNLAYA 156
Query: 156 VSKAAVDQFTSCTALELASKGVRVNSVNPGVTLTNLHKNSGIDQQAYQNFLERSKETHAL 215
SK A+ A GVR+N++ PG T T L + D + ++ + +
Sbjct: 157 GSKNALTVAVRKRAAAWGEAGVRLNTIAPGATETPLLQAGLQDPRYGESIAKF---VPPM 213
Query: 216 GRVGNPEEVAKAIAFLASDDASFTTGEHLTVDGGRHAM 253
GR P E+A IAFL S AS+ G + +DGG A+
Sbjct: 214 GRRAEPSEMASVIAFLMSPAASYVHGAQIVIDGGIDAV 251
>1dhr_A Dihydropteridine reductase; oxidoreductase(acting on NADH or
NADPH); HET: NAD; 2.30A {Rattus norvegicus} SCOP:
c.2.1.2 PDB: 1dir_A* 1hdr_A*
Length = 241
Score = 207 bits (530), Expect = 2e-67
Identities = 38/258 (14%), Positives = 80/258 (31%), Gaps = 29/258 (11%)
Query: 3 FTGKVILVTGASSGIGAATALHLAKLDAKLAITGRNVEQLDKVSESCQSVSKNKPLVIQA 62
+ +LV G +G+ + +A + S + +
Sbjct: 5 GEARRVLVYGGRGALGSRCVQAFRARNWWVASIDVVENEEASASVIVK---------MTD 55
Query: 63 DLTSEEDTKRIIDTVVKHYQKLNVLVNNAGILEAGS-IENTSLEQYDKIMNVNVRSIYHL 121
T + D + QK++ ++ AG G+ + + D + ++ +
Sbjct: 56 SFTEQADQVTAEVGKLLGDQKVDAILCVAGGWAGGNAKSKSLFKNCDLMWKQSIWTSTIS 115
Query: 122 TMLAVPHLISTKGNIVNVSSVNGLRSFPGVLAYCVSKAAVDQFTSCTALELAS--KGVRV 179
+ LA HL G + + L PG++ Y ++K AV Q A + + G
Sbjct: 116 SHLATKHL-KEGGLLTLAGAKAALDGTPGMIGYGMAKGAVHQLCQSLAGKNSGMPSGAAA 174
Query: 180 NSVNPGVTLTNLHKNSGIDQQAYQNFLERSKETHALGRVGNPEEVAKAIAFLASDDASFT 239
+V P T + +S E + + + +
Sbjct: 175 IAVLPVTLDTPM--------------NRKSMPEADFSSWTPLEFLVETFHDWITGNKRPN 220
Query: 240 TGEHLTV--DGGRHAMCP 255
+G + V G+ + P
Sbjct: 221 SGSLIQVVTTDGKTELTP 238
>3rih_A Short chain dehydrogenase or reductase; structural genomics,
seattle structural genomics center for infectious
disease, ssgcid; HET: PG5; 2.15A {Mycobacterium
abscessus}
Length = 293
Score = 209 bits (535), Expect = 2e-67
Identities = 70/251 (27%), Positives = 124/251 (49%), Gaps = 8/251 (3%)
Query: 1 MNFTGKVILVTGASSGIGAATALHLAKLDAKLAITGRNVEQLDKVSESCQSVSKNKPLVI 60
+ + + +LVTG + GIG A A+ A +A+ R+ +L V+ + + +
Sbjct: 37 FDLSARSVLVTGGTKGIGRGIATVFARAGANVAVAARSPRELSSVTAELGELGAGNVIGV 96
Query: 61 QADLTSEEDTKRIIDTVVKHYQKLNVLVNNAGILEAGSIENTSLEQYDKIMNVNVRSIYH 120
+ D++ TVV + L+V+ NAGI ++ + EQ ++++VNV+ +
Sbjct: 97 RLDVSDPGSCADAARTVVDAFGALDVVCANAGIFPEARLDTMTPEQLSEVLDVNVKGTVY 156
Query: 121 LTMLAVPHLISTK-GNIVNVSSVNGLRS-FPGVLAYCVSKAAVDQFTSCTALELASKGVR 178
+ L ++ G ++ SS+ G + +PG Y SKAA F A+ELA +GV
Sbjct: 157 TVQACLAPLTASGRGRVILTSSITGPVTGYPGWSHYGASKAAQLGFMRTAAIELAPRGVT 216
Query: 179 VNSVNPGVTLTNLHKNSGIDQQAYQNFLERSKETHALGRVGNPEEVAKAIAFLASDDASF 238
VN++ PG LT + G + + +G +G+P ++ AFLA+D+A +
Sbjct: 217 VNAILPGNILTEGLVDMGEEYI------SGMARSIPMGMLGSPVDIGHLAAFLATDEAGY 270
Query: 239 TTGEHLTVDGG 249
TG+ + VDGG
Sbjct: 271 ITGQAIVVDGG 281
>3rkr_A Short chain oxidoreductase; rossmann fold; HET: NAP; 2.42A
{Uncultured bacterium BIO5}
Length = 262
Score = 208 bits (531), Expect = 3e-67
Identities = 67/243 (27%), Positives = 110/243 (45%), Gaps = 17/243 (6%)
Query: 2 NFTGKVILVTGASSGIGAATALHLAKLDAKLAITGRNVEQLDKVSESCQSVSKNKPLVIQ 61
+ +G+V +VTGAS GIGAA A L L A++ +T R+VE+L V + + +
Sbjct: 26 SLSGQVAVVTGASRGIGAAIARKLGSLGARVVLTARDVEKLRAVEREIVA-AGGEAESHA 84
Query: 62 ADLTSEEDTKRIIDTVVKHYQKLNVLVNNAGI-LEAGSIENTSLEQYDKIMNVNVRSIYH 120
DL+ + V+ + + +VLVNNAG+ G + ++D ++ VN+++ Y
Sbjct: 85 CDLSHSDAIAAFATGVLAAHGRCDVLVNNAGVGWFGGPLHTMKPAEWDALIAVNLKAPYL 144
Query: 121 LTMLAVPHLISTK-GNIVNVSSVNGLRSFPGVLAYCVSKAAVDQFTSCTALELASKGVRV 179
L P +I+ K G+I+N+SS+ G AY SK ++ + A EL VRV
Sbjct: 145 LLRAFAPAMIAAKRGHIINISSLAGKNPVADGAAYTASKWGLNGLMTSAAEELRQHQVRV 204
Query: 180 NSVNPGVTLTNLHKNSGIDQQAYQNFLERSKETHALGRVGNPEEVAKAIAFLASDDASFT 239
+ V PG T + P+++A +A LA+
Sbjct: 205 SLVAPGSVRTEF--------------GVGLSAKKSALGAIEPDDIADVVALLATQADQSF 250
Query: 240 TGE 242
E
Sbjct: 251 ISE 253
>3cxt_A Dehydrogenase with different specificities; rossman fold,
oxidoreductase; HET: NAP GKR; 1.90A {Streptococcus suis}
PDB: 3cxr_A* 3o03_A*
Length = 291
Score = 206 bits (526), Expect = 3e-66
Identities = 64/253 (25%), Positives = 113/253 (44%), Gaps = 12/253 (4%)
Query: 4 TGKVILVTGASSGIGAATALHLAKLDAKLAITGRNVEQLDKVSESCQSVSKNKPLVIQAD 63
GK+ LVTGAS GIG A A AK A + N E +D+ + ++ D
Sbjct: 33 KGKIALVTGASYGIGFAIASAYAKAGATIVFNDINQELVDRGMAAYKAAGI-NAHGYVCD 91
Query: 64 LTSEEDTKRIIDTVVKHYQKLNVLVNNAGILEAGSIENTSLEQYDKIMNVNVRSIYHLTM 123
+T E+ + ++ + +++LVNNAGI+ + + Q+ +++++++ + + ++
Sbjct: 92 VTDEDGIQAMVAQIESEVGIIDILVNNAGIIRRVPMIEMTAAQFRQVIDIDLNAPFIVSK 151
Query: 124 LAVPHLISTK-GNIVNVSSVNGLRSFPGVLAYCVSKAAVDQFTSCTALELASKGVRVNSV 182
+P +I G I+N+ S+ V AY +K + T A E ++ N +
Sbjct: 152 AVIPSMIKKGHGKIINICSMMSELGRETVSAYAAAKGGLKMLTKNIASEYGEANIQCNGI 211
Query: 183 NPGVTLTNL------HKNSGIDQQAYQNFLERSKETHALGRVGNPEEVAKAIAFLASDDA 236
PG T + G Q + ++ R G E++ FLASD +
Sbjct: 212 GPGYIATPQTAPLRELQKDGSRHPFDQFIIAKT----PAARWGEAEDLMGPAVFLASDAS 267
Query: 237 SFTTGEHLTVDGG 249
+F G L VDGG
Sbjct: 268 NFVNGHILYVDGG 280
>3uf0_A Short-chain dehydrogenase/reductase SDR; gluconate, gluconate
5-dehydratase, NAD(P) dependent, enzyme initiative, EFI,
oxidoreductase; HET: NAP; 2.00A {Beutenbergia cavernae}
Length = 273
Score = 205 bits (525), Expect = 3e-66
Identities = 77/249 (30%), Positives = 117/249 (46%), Gaps = 12/249 (4%)
Query: 4 TGKVILVTGASSGIGAATALHLAKLDAKLAITGRNVEQLDKVSESCQSVSKN--KPLVIQ 61
G+ +VTGA SGIG A A A+ A + GR D V E ++ +
Sbjct: 30 AGRTAVVTGAGSGIGRAIAHGYARAGAHVLAWGRT----DGVKEVADEIADGGGSAEAVV 85
Query: 62 ADLTSEEDTKRIIDTVVKHYQKLNVLVNNAGILEAGSIENTSLEQYDKIMNVNVRSIYHL 121
ADL E + + + ++++VLVNNAGI+ E SL ++ +++ VN+ + + L
Sbjct: 86 ADLADLEGAANVAEEL-AATRRVDVLVNNAGIIARAPAEEVSLGRWREVLTVNLDAAWVL 144
Query: 122 TMLAVPHLISTK-GNIVNVSSVNGLRSFPGVLAYCVSKAAVDQFTSCTALELASKGVRVN 180
+ +++ G IV ++S+ + V AY SK AV T A E A +GV VN
Sbjct: 145 SRSFGTAMLAHGSGRIVTIASMLSFQGGRNVAAYAASKHAVVGLTRALASEWAGRGVGVN 204
Query: 181 SVNPGVTLTNLHKNSGIDQQAYQNFLERSKETHALGRVGNPEEVAKAIAFLASDDASFTT 240
++ PG +T D + R GR PE++ FLASD AS+
Sbjct: 205 ALAPGYVVTANTAALRADDERAAEITARIP----AGRWATPEDMVGPAVFLASDAASYVH 260
Query: 241 GEHLTVDGG 249
G+ L VDGG
Sbjct: 261 GQVLAVDGG 269
>3sx2_A Putative 3-ketoacyl-(acyl-carrier-protein) reduct; ssgcid,
3-ketoacyl-(acyl-carrier-protein) reductase, mycobac
paratuberculosis; HET: NAD; 1.50A {Mycobacterium avium
subsp}
Length = 278
Score = 203 bits (519), Expect = 2e-65
Identities = 72/270 (26%), Positives = 115/270 (42%), Gaps = 29/270 (10%)
Query: 3 FTGKVILVTGASSGIGAATALHLAKLDAKLAIT------------GRNVEQLDKVSESCQ 50
TGKV +TGA+ G G A A+ LA A + E+L + +
Sbjct: 11 LTGKVAFITGAARGQGRAHAVRLAADGADIIAVDLCDQIASVPYPLATPEELAATVKLVE 70
Query: 51 SVSKNKPLVIQADLTSEEDTKRIIDTVVKHYQKLNVLVNNAGILEAGSIENTSLEQYDKI 110
+ + + QAD+ E + + +L+++V NAGI + + +
Sbjct: 71 DIGS-RIVARQADVRDRESLSAALQAGLDELGRLDIVVANAGIAPMS----AGDDGWHDV 125
Query: 111 MNVNVRSIYHLTMLAVPHLISTK--GNIVNVSSVNGLRSF----PGVLAYCVSKAAVDQF 164
++VN+ +YH +A+P L+ G+IV +SS GL PG + Y +K V
Sbjct: 126 IDVNLTGVYHTIKVAIPTLVKQGTGGSIVLISSSAGLAGVGSADPGSVGYVAAKHGVVGL 185
Query: 165 TSCTALELASKGVRVNSVNPGVTLTNLHKNSGI-----DQQAYQNFLERSKETHALGRVG 219
A LA + +RVNS++P T + N A + + +
Sbjct: 186 MRVYANLLAGQMIRVNSIHPSGVETPMINNEFTREWLAKMAAATDTPGAMGNAMPVEVLA 245
Query: 220 NPEEVAKAIAFLASDDASFTTGEHLTVDGG 249
PE+VA A+A+L SD A + TG L VD G
Sbjct: 246 -PEDVANAVAWLVSDQARYITGVTLPVDAG 274
>2bd0_A Sepiapterin reductase; oxidoreductase; HET: NAP BIO; 1.70A
{Chlorobium tepidum} SCOP: c.2.1.2
Length = 244
Score = 202 bits (515), Expect = 4e-65
Identities = 60/250 (24%), Positives = 103/250 (41%), Gaps = 27/250 (10%)
Query: 1 MNFTGKVILVTGASSGIGAATALHLAKLDAK-------LAITGRNVEQLDKVSESCQSVS 53
M ++L+TGA GIG A AL A+ L ++ R L+K+S C++
Sbjct: 1 MK---HILLITGAGKGIGRAIALEFARAARHHPDFEPVLVLSSRTAADLEKISLECRAEG 57
Query: 54 KNKPLVIQADLTSEEDTKRIIDTVVKHYQKLNVLVNNAGILEAGSIENTSLEQYDKIMNV 113
I AD++ D +R+ +V+ Y ++ LVNNAG+ G++ + + E +D MN
Sbjct: 58 -ALTDTITADISDMADVRRLTTHIVERYGHIDCLVNNAGVGRFGALSDLTEEDFDYTMNT 116
Query: 114 NVRSIYHLTMLAVPHLISTK-GNIVNVSSVNGLRSFPGVLAYCVSKAAVDQFTSCTALEL 172
N++ + LT + G+I ++SV ++F YC+SK L
Sbjct: 117 NLKGTFFLTQALFALMERQHSGHIFFITSVAATKAFRHSSIYCMSKFGQRGLVETMRLYA 176
Query: 173 ASKGVRVNSVNPGVTLTNLHKNSGIDQQAYQNFLERSKETHALGRVGNPEEVAKAIAFLA 232
VR+ V PG T + +D + + PE++A +
Sbjct: 177 RKCNVRITDVQPGAVYTPM--WGKVDDEMQALMMM-------------PEDIAAPVVQAY 221
Query: 233 SDDASFTTGE 242
+ E
Sbjct: 222 LQPSRTVVEE 231
>2qq5_A DHRS1, dehydrogenase/reductase SDR family member 1; short-chain,
structura genomics consortium, SGC, oxidoreductase;
1.80A {Homo sapiens}
Length = 260
Score = 201 bits (514), Expect = 8e-65
Identities = 71/253 (28%), Positives = 118/253 (46%), Gaps = 13/253 (5%)
Query: 4 TGKVILVTGASSGIGAATALHLAKLDAKLAITGRNVEQLDKVSESCQSVSKNKPLVIQAD 63
G+V +VTGAS GIG AL L K A + ITGR+++ L V++ QS+ + + + D
Sbjct: 4 NGQVCVVTGASRGIGRGIALQLCKAGATVYITGRHLDTLRVVAQEAQSLG-GQCVPVVCD 62
Query: 64 LTSEEDTKRIIDTVVK-HYQKLNVLVNNAGILEAGSIEN-------TSLEQYDKIMNVNV 115
+ E + + + + V + +L+VLVNNA + T +D I NV +
Sbjct: 63 SSQESEVRSLFEQVDREQQGRLDVLVNNAYAGVQTILNTRNKAFWETPASMWDDINNVGL 122
Query: 116 RSIYHLTMLAVPHLISTK-GNIVNVSSVNGLRSFPGVLAYCVSKAAVDQFTSCTALELAS 174
R Y ++ ++ G IV +SS L+ + + Y V KAA D+ + A EL
Sbjct: 123 RGHYFCSVYGARLMVPAGQGLIVVISSPGSLQ-YMFNVPYGVGKAACDKLAADCAHELRR 181
Query: 175 KGVRVNSVNPGVTLTNLHKNSGIDQQAYQNFLERSKETHALGRVGNPEEVAKAIAFLASD 234
GV S+ PG+ T L K ++ Q+ + + ++ E K + LA+D
Sbjct: 182 HGVSCVSLWPGIVQTELLKEHMAKEEVLQDPVLKQFKSA-FSSAETTELSGKCVVALATD 240
Query: 235 -DASFTTGEHLTV 246
+ +G+ L
Sbjct: 241 PNILSLSGKVLPS 253
>1uls_A Putative 3-oxoacyl-acyl carrier protein reductase; structural
genomics, riken structural genomics/proteomics
initiative, RSGI; 2.40A {Thermus thermophilus} SCOP:
c.2.1.2
Length = 245
Score = 201 bits (513), Expect = 1e-64
Identities = 75/250 (30%), Positives = 112/250 (44%), Gaps = 14/250 (5%)
Query: 1 MNFTGKVILVTGASSGIGAATALHLAKLDAKLAITGRNVEQLDKVSESCQSVSKNKPLVI 60
M K +L+TGA+ GIG AT AK A+L L + +E+ + +
Sbjct: 1 MRLKDKAVLITGAAHGIGRATLELFAKEGARLVACDIEEGPLREAAEAVGA------HPV 54
Query: 61 QADLTSEEDTKRIIDTVVKHYQKLNVLVNNAGILEAGSIENTSLEQYDKIMNVNVRSIYH 120
D+ +R + H +L+ +V+ AGI LE ++ ++ VN+ +
Sbjct: 55 VMDVADPASVERGFAEALAHLGRLDGVVHYAGITRDNFHWKMPLEDWELVLRVNLTGSFL 114
Query: 121 LTMLAVPHLISTK-GNIVNVSSVNGLRSFPGVLAYCVSKAAVDQFTSCTALELASKGVRV 179
+ A + G+IV +S L + G Y S A V T ALEL G+RV
Sbjct: 115 VAKAASEAMREKNPGSIVLTASRVYLGN-LGQANYAASMAGVVGLTRTLALELGRWGIRV 173
Query: 180 NSVNPGVTLTNLHKNSGIDQQAYQNFLERSKETHALGRVGNPEEVAKAIAFLASDDASFT 239
N++ PG T + + E++ LGR G P EVA A FL SD++SF
Sbjct: 174 NTLAPGFIETRMTAKVPEKVR------EKAIAATPLGRAGKPLEVAYAALFLLSDESSFI 227
Query: 240 TGEHLTVDGG 249
TG+ L VDGG
Sbjct: 228 TGQVLFVDGG 237
>3oec_A Carveol dehydrogenase (mytha.01326.C, A0R518 HOMO; ssgcid,
structural genomics; 1.95A {Mycobacterium
thermoresistibile}
Length = 317
Score = 203 bits (518), Expect = 1e-64
Identities = 72/270 (26%), Positives = 122/270 (45%), Gaps = 24/270 (8%)
Query: 3 FTGKVILVTGASSGIGAATALHLAKLDAKLAIT------------GRNVEQLDKVSESCQ 50
GKV +TGA+ G G A+ LA+ A + + E+L + +
Sbjct: 44 LQGKVAFITGAARGQGRTHAVRLAQDGADIVAIDLCRQQPNLDYAQGSPEELKETVRLVE 103
Query: 51 SVSKNKPLVIQADLTSEEDTKRIIDTVVKHYQKLNVLVNNAGILEAGSIENTSLEQYDKI 110
+ + + QAD+ + ++D + + +++LV+N GI G + + + +Q+ I
Sbjct: 104 EQGR-RIIARQADVRDLASLQAVVDEALAEFGHIDILVSNVGISNQGEVVSLTDQQWSDI 162
Query: 111 MNVNVRSIYHLTMLAVPHLISTK--GNIVNVSSVNGLRSFPGVLAYCVSKAAVDQFTSCT 168
+ N+ +H +P +I G+++ VSS GLR PG Y SK V
Sbjct: 163 LQTNLIGAWHACRAVLPSMIERGQGGSVIFVSSTVGLRGAPGQSHYAASKHGVQGLMLSL 222
Query: 169 ALELASKGVRVNSVNPGVTLTNLHKNSGI--------DQQAYQNFLERSKETHALG-RVG 219
A E+ +RVNSVNPG T + N + + ++ E + L
Sbjct: 223 ANEVGRHNIRVNSVNPGAVNTEMALNEKLLKMFLPHLENPTREDAAELFSQLTLLPIPWV 282
Query: 220 NPEEVAKAIAFLASDDASFTTGEHLTVDGG 249
PE+V+ A+A+LASD+A + G + VDGG
Sbjct: 283 EPEDVSNAVAWLASDEARYIHGAAIPVDGG 312
>2hq1_A Glucose/ribitol dehydrogenase; CTH-1438, structural genomics,
southeast collaboratory for structural genomics, secsg,
PSI; 1.90A {Clostridium thermocellum}
Length = 247
Score = 200 bits (511), Expect = 2e-64
Identities = 79/251 (31%), Positives = 131/251 (52%), Gaps = 9/251 (3%)
Query: 1 MNFTGKVILVTGASSGIGAATALHLAKLDAKLAITG-RNVEQLDKVSESCQSVSKNKPLV 59
M GK +VTG+S G+G A A L + A + + G LD +E ++ + +V
Sbjct: 1 MQLKGKTAIVTGSSRGLGKAIAWKLGNMGANIVLNGSPASTSLDATAEEFKA-AGINVVV 59
Query: 60 IQADLTSEEDTKRIIDTVVKHYQKLNVLVNNAGILEAGSIENTSLEQYDKIMNVNVRSIY 119
+ D+ + ED + ++ T + + ++++LVNNAGI + S + +D ++N N++S Y
Sbjct: 60 AKGDVKNPEDVENMVKTAMDAFGRIDILVNNAGITRDTLMLKMSEKDWDDVLNTNLKSAY 119
Query: 120 HLTMLAVPHLISTK-GNIVNVSSVNGLRSFPGVLAYCVSKAAVDQFTSCTALELASKGVR 178
T ++ K G I+N++S+ G+ G Y SKA + FT A E A+KG+
Sbjct: 120 LCTKAVSKIMLKQKSGKIINITSIAGIIGNAGQANYAASKAGLIGFTKSIAKEFAAKGIY 179
Query: 179 VNSVNPGVTLTNLHKNSGIDQQAYQNFLERSKETHALGRVGNPEEVAKAIAFLASDDASF 238
N+V PG+ T++ + E L R G PEEVA + FLASDD+++
Sbjct: 180 CNAVAPGIIKTDMTDVLPDKVK------EMYLNNIPLKRFGTPEEVANVVGFLASDDSNY 233
Query: 239 TTGEHLTVDGG 249
TG+ + +DGG
Sbjct: 234 ITGQVINIDGG 244
>3e9n_A Putative short-chain dehydrogenase/reductase; structural genomics,
unknown function, oxidoreductase, PSI- 2; 2.40A
{Corynebacterium glutamicum}
Length = 245
Score = 200 bits (510), Expect = 2e-64
Identities = 62/248 (25%), Positives = 109/248 (43%), Gaps = 24/248 (9%)
Query: 1 MNFTGKVILVTGASSGIGAATALHLAKLDAKLAITGRNVEQLDKVSESCQSVSKNKPLVI 60
M+ K+ +VTGA+ G+G L++ D + GRN E L ++E I
Sbjct: 1 MSLKKKIAVVTGATGGMGIEIVKDLSR-DHIVYALGRNPEHLAALAEIEGV------EPI 53
Query: 61 QADLTSEEDTKRIIDTVVKHYQKLNVLVNNAGILEAGSIENTSLEQYDKIMNVNVRSIYH 120
++D+ E + +D + K+ ++ LV+ A + +IE S+ ++ +++NV
Sbjct: 54 ESDIVKEVLEEGGVDKL-KNLDHVDTLVHAAAVARDTTIEAGSVAEWHAHLDLNVIVPAE 112
Query: 121 LTMLAVPHLISTKGNIVNVSSVNGLRSFPGVLAYCVSKAAVDQFTSCTALELASKGVRVN 180
L+ +P L + G ++ ++S G PG Y SK A+ E A+ G+RV+
Sbjct: 113 LSRQLLPALRAASGCVIYINSGAGNGPHPGNTIYAASKHALRGLADAFRKEEANNGIRVS 172
Query: 181 SVNPGVTLTNLHKNSGIDQQAYQNFLERSKETHALGRVGNPEEVAKAIAFLASDDASFTT 240
+V+PG T T + G+ NF P+E+A AI F+
Sbjct: 173 TVSPGPTNTPM--LQGLMDSQGTNFRPE--------IYIEPKEIANAIRFVID------A 216
Query: 241 GEHLTVDG 248
GE +
Sbjct: 217 GETTQITN 224
>2pd6_A Estradiol 17-beta-dehydrogenase 8; short-chain
dehydrogenase/reductase, steroid metabolism, LIP
metabolism, structural genomics; HET: NAD; 2.00A {Homo
sapiens}
Length = 264
Score = 199 bits (508), Expect = 7e-64
Identities = 75/256 (29%), Positives = 122/256 (47%), Gaps = 15/256 (5%)
Query: 3 FTGKVILVTGASSGIGAATALHLAKLDAKLAITGRNVEQLDKVSESCQS------VSKNK 56
+ LVTGA SGIG A ++ LA A +A + + +
Sbjct: 5 LRSALALVTGAGSGIGRAVSVRLAGEGATVAACDLDRAAAQETVRLLGGPGSKEGPPRGN 64
Query: 57 PLVIQADLTSEEDTKRIIDTVVKHYQK-LNVLVNNAGILEAGSIENTSLEQYDKIMNVNV 115
QAD++ + +++ V + + +V+V+ AGI + + + S + +DK++ VN+
Sbjct: 65 HAAFQADVSEARAARCLLEQVQACFSRPPSVVVSCAGITQDEFLLHMSEDDWDKVIAVNL 124
Query: 116 RSIYHLTMLAVPHLISTK--GNIVNVSSVNGLRSFPGVLAYCVSKAAVDQFTSCTALELA 173
+ + +T A L+S G+I+N+SS+ G G Y SKA V T A EL
Sbjct: 125 KGTFLVTQAAAQALVSNGCRGSIINISSIVGKVGNVGQTNYAASKAGVIGLTQTAARELG 184
Query: 174 SKGVRVNSVNPGVTLTNLHKNSGIDQQAYQNFLERSKETHALGRVGNPEEVAKAIAFLAS 233
G+R NSV PG T + + Q+ E +G +G+PE+VA +AFLAS
Sbjct: 185 RHGIRCNSVLPGFIATPM--TQKVPQKVVDKITEMI----PMGHLGDPEDVADVVAFLAS 238
Query: 234 DDASFTTGEHLTVDGG 249
+D+ + TG + V GG
Sbjct: 239 EDSGYITGTSVEVTGG 254
>3ezl_A Acetoacetyl-COA reductase; ssgcid, acetyacetyl-COA reductase,
oxidoreductase, structural genomics; HET: P4C; 2.25A
{Burkholderia pseudomallei 1710B}
Length = 256
Score = 198 bits (506), Expect = 1e-63
Identities = 72/251 (28%), Positives = 129/251 (51%), Gaps = 9/251 (3%)
Query: 1 MNFTGKVILVTGASSGIGAATALHLAKLDAKLAIT-GRNVEQLDKVSESCQSVSKNKPLV 59
M + ++ VTG GIG + L K ++ G N + K E +++
Sbjct: 9 MVMSQRIAYVTGGMGGIGTSICQRLHKDGFRVVAGCGPNSPRRVKWLEDQKALGF-DFYA 67
Query: 60 IQADLTSEEDTKRIIDTVVKHYQKLNVLVNNAGILEAGSIENTSLEQYDKIMNVNVRSIY 119
+ ++ + TK+ D V +++VLVNNAGI + E + +++ N+ S++
Sbjct: 68 SEGNVGDWDSTKQAFDKVKAEVGEIDVLVNNAGITRDVVFRKMTREDWQAVIDTNLTSLF 127
Query: 120 HLTMLAVPHLISTK-GNIVNVSSVNGLRSFPGVLAYCVSKAAVDQFTSCTALELASKGVR 178
++T + ++ G I+N+SSVNG + G Y +KA + FT A E+A+KGV
Sbjct: 128 NVTKQVIDGMVERGWGRIINISSVNGQKGQFGQTNYSTAKAGIHGFTMSLAQEVATKGVT 187
Query: 179 VNSVNPGVTLTNLHKNSGIDQQAYQNFLERSKETHALGRVGNPEEVAKAIAFLASDDASF 238
VN+V+PG T++ K D E+ T + R+G+P+E+ +A+LAS+++ F
Sbjct: 188 VNTVSPGYIGTDMVKAIRPDVL------EKIVATIPVRRLGSPDEIGSIVAWLASEESGF 241
Query: 239 TTGEHLTVDGG 249
+TG +++GG
Sbjct: 242 STGADFSLNGG 252
>3ioy_A Short-chain dehydrogenase/reductase SDR; structural genomics,
oxidoreductase, PSI-2, protein structure initiative;
1.90A {Novosphingobium aromaticivorans DSM12444}
Length = 319
Score = 200 bits (511), Expect = 1e-63
Identities = 50/241 (20%), Positives = 102/241 (42%), Gaps = 14/241 (5%)
Query: 2 NFTGKVILVTGASSGIGAATALHLAKLDAKLAITGRNVEQLDKVSESCQSVSKNKP-LVI 60
+F G+ VTG ++G+G L K+AI + +DK + ++ + +
Sbjct: 5 DFAGRTAFVTGGANGVGIGLVRQLLNQGCKVAIADIRQDSIDKALATLEAEGSGPEVMGV 64
Query: 61 QADLTSEEDTKRIIDTVVKHYQKLNVLVNNAGILEAGSIENTSLEQYDKIMNVNVRSIYH 120
Q D+ S E K D V + +++L NNAG+ IE +S + +D ++ VN+ + +
Sbjct: 65 QLDVASREGFKMAADEVEARFGPVSILCNNAGVNLFQPIEESSYDDWDWLLGVNLHGVVN 124
Query: 121 LTMLAVPHLI-------STKGNIVNVSSVNGLRSFPGVLAYCVSKAAVDQFTSCTALELA 173
VP ++ G++VN +S+ + Y +K AV + L
Sbjct: 125 GVTTFVPRMVERVKAGEQKGGHVVNTASMAAFLAAGSPGIYNTTKFAVRGLSESLHYSLL 184
Query: 174 SKGVRVNSVNPGVTLTNLHKNSGIDQQAYQNFLERSKET-----HALGRVG-NPEEVAKA 227
+ V+ + PG+ + ++ + I A + ++ +T + G P+ +
Sbjct: 185 KYEIGVSVLCPGLVKSYIYASDDIRPDALKGEVKPVDKTAVERLAGVHEFGMEPDVIGAR 244
Query: 228 I 228
+
Sbjct: 245 V 245
>3s55_A Putative short-chain dehydrogenase/reductase; structural genomics,
seattle structural genomics center for infectious
disease, ssgcid; HET: NAD; 2.10A {Mycobacterium
abscessus}
Length = 281
Score = 199 bits (508), Expect = 1e-63
Identities = 63/270 (23%), Positives = 111/270 (41%), Gaps = 23/270 (8%)
Query: 2 NFTGKVILVTGASSGIGAATALHLAKLDAKLAITGR------------NVEQLDKVSESC 49
+F GK L+TG + G+G + A+ LA+ A +AI R + L +
Sbjct: 7 DFEGKTALITGGARGMGRSHAVALAEAGADIAICDRCENSDVVGYPLATADDLAETVALV 66
Query: 50 QSVSKNKPLVIQADLTSEEDTKRIIDTVVKHYQKLNVLVNNAGILEAGSIENTSLEQYDK 109
+ + + + + D+ + + +++ + NAGI + Q+D+
Sbjct: 67 EKTGR-RCISAKVDVKDRAALESFVAEAEDTLGGIDIAITNAGISTIALLPEVESAQWDE 125
Query: 110 IMNVNVRSIYHLTMLAVPHLISTK-GNIVNVSSVNGLRSFPGVLAYCVSKAAVDQFTSCT 168
++ N+ ++ P +I G IV VSS+ G + +Y SK V T C
Sbjct: 126 VIGTNLTGTFNTIAAVAPGMIKRNYGRIVTVSSMLGHSANFAQASYVSSKWGVIGLTKCA 185
Query: 169 ALELASKGVRVNSVNPGVTLTNLHKNSG--------IDQQAYQNFLERSKETHA-LGRVG 219
A +L G+ VN+V PG T + N +++ ++ H
Sbjct: 186 AHDLVGYGITVNAVAPGNIETPMTHNDFVFGTMRPDLEKPTLKDVESVFASLHLQYAPFL 245
Query: 220 NPEEVAKAIAFLASDDASFTTGEHLTVDGG 249
PEEV +A+ FL + +S TG L +D G
Sbjct: 246 KPEEVTRAVLFLVDEASSHITGTVLPIDAG 275
>3op4_A 3-oxoacyl-[acyl-carrier protein] reductase;
3-ketoacyl-(acyl-carrier-protein) reductase; HET: MSE
NAP; 1.60A {Vibrio cholerae o1 biovar el tor} PDB:
3rsh_A* 3rro_A* 3tzk_A 3tzc_A* 3u09_A 3tzh_A 1q7b_A*
1i01_A* 1q7c_A* 2cf2_E
Length = 248
Score = 198 bits (505), Expect = 2e-63
Identities = 86/250 (34%), Positives = 132/250 (52%), Gaps = 11/250 (4%)
Query: 1 MNFTGKVILVTGASSGIGAATALHLAKLDAKLAITGRNVEQLDKVSESCQSVSKNKPLVI 60
MN GKV LVTGAS GIG A A LA+ AK+ T + +S+ + +
Sbjct: 5 MNLEGKVALVTGASRGIGKAIAELLAERGAKVIGTATSESGAQAISDYL----GDNGKGM 60
Query: 61 QADLTSEEDTKRIIDTVVKHYQKLNVLVNNAGILEAGSIENTSLEQYDKIMNVNVRSIYH 120
++T+ E + ++ + + +++LVNNAGI + E++ IM N+ SI+
Sbjct: 61 ALNVTNPESIEAVLKAITDEFGGVDILVNNAGITRDNLLMRMKEEEWSDIMETNLTSIFR 120
Query: 121 LTMLAVPHLISTK-GNIVNVSSVNGLRSFPGVLAYCVSKAAVDQFTSCTALELASKGVRV 179
L+ + ++ + G I+NV SV G G Y +KA V FT A E+AS+GV V
Sbjct: 121 LSKAVLRGMMKKRQGRIINVGSVVGTMGNAGQANYAAAKAGVIGFTKSMAREVASRGVTV 180
Query: 180 NSVNPGVTLTNLHKNSGIDQQAYQNFLERSKETHALGRVGNPEEVAKAIAFLASDDASFT 239
N+V PG T++ K +Q+ + GR+G+P E+A A+AFLAS +A++
Sbjct: 181 NTVAPGFIETDMTKALNDEQR------TATLAQVPAGRLGDPREIASAVAFLASPEAAYI 234
Query: 240 TGEHLTVDGG 249
TGE L V+GG
Sbjct: 235 TGETLHVNGG 244
>1o5i_A 3-oxoacyl-(acyl carrier protein) reductase; TM1169, structur
genomics, JCSG, PSI, protein structure initiative, joint
CE structural genomics; HET: NAD; 2.50A {Thermotoga
maritima} SCOP: c.2.1.2
Length = 249
Score = 197 bits (504), Expect = 2e-63
Identities = 64/256 (25%), Positives = 119/256 (46%), Gaps = 23/256 (8%)
Query: 1 MNFTGKVILVTGASSGIGAATALHLAKLDAKLAITGRNVEQLDKVSESCQSVSKNKPLVI 60
+ K +LV AS GIG A A L++ A++ I RN E L + +
Sbjct: 15 LGIRDKGVLVLAASRGIGRAVADVLSQEGAEVTICARNEELLKRSGHR----------YV 64
Query: 61 QADLTSEEDTKRIIDTVVKHYQKLNVLVNNAGILEAGSIENTSLEQYDKIMNVNVRSIYH 120
DL + +D + + +++++LV NAG +AG + + E + + ++ ++
Sbjct: 65 VCDLRKD------LDLLFEKVKEVDILVLNAGGPKAGFFDELTNEDFKEAIDSLFLNMIK 118
Query: 121 LTMLAVPHLISTK-GNIVNVSSVNGLRSFPGVLAYCVSKAAVDQFTSCTALELASKGVRV 179
+ +P + G IV ++S + + + ++ A+ F + E+A G+ V
Sbjct: 119 IVRNYLPAMKEKGWGRIVAITSFSVISPIENLYTSNSARMALTGFLKTLSFEVAPYGITV 178
Query: 180 NSVNPGVTLTNLHKNSGIDQQAYQNFLERSKETHALGRVGNPEEVAKAIAFLASDDASFT 239
N V PG T T K +++ ++ + + R+ PEE+A +AFL S+ AS+
Sbjct: 179 NCVAPGWTETERVKELLSEEKK-----KQVESQIPMRRMAKPEEIASVVAFLCSEKASYL 233
Query: 240 TGEHLTVDGGRHAMCP 255
TG+ + VDGG + P
Sbjct: 234 TGQTIVVDGGL-SKFP 248
>3h7a_A Short chain dehydrogenase; oxidoreductase, PSI-2, NYSGXRC,
structural genomics, protein structure initiative; 1.87A
{Rhodopseudomonas palustris}
Length = 252
Score = 197 bits (504), Expect = 2e-63
Identities = 42/244 (17%), Positives = 78/244 (31%), Gaps = 11/244 (4%)
Query: 1 MNFTGKVILVTGASSGIGAATALHLAKLDAKLAITGRNVEQLDKVSESCQSVSKNKPLVI 60
+ + V GA IGA A A + RN E+L + ++ + + +
Sbjct: 3 LTPRNATVAVIGAGDYIGAEIAKKFAAEGFTVFAGRRNGEKLAPLVAEIEA-AGGRIVAR 61
Query: 61 QADLTSEEDTKRIIDTVVKHYQKLNVLVNNAGILEAGSIENTSLEQYDKIMNVNVRSIYH 120
D +E++ ++ + L V + N G I T+ + K+ + + +
Sbjct: 62 SLDARNEDEVTAFLNA-ADAHAPLEVTIFNVGANVNFPILETTDRVFRKVWEMACWAGFV 120
Query: 121 LTMLAVPHLISTK-GNIVNVSSVNGLRSFPGVLAYCVSKAAVDQFTSCTALELASKGVRV 179
+ +++ G I + LR G A+ +K + A EL K + V
Sbjct: 121 SGRESARLMLAHGQGKIFFTGATASLRGGSGFAAFASAKFGLRAVAQSMARELMPKNIHV 180
Query: 180 -NSVNPGVTLTNLHKNSGIDQQAYQNFLERSKETHALGRVGNPEEVAKAIAFLASDDASF 238
+ + T + + P VA A L S
Sbjct: 181 AHLIIDSGVDTAWVRERREQM-------FGKDALANPDLLMPPAAVAGAYWQLYQQPKSA 233
Query: 239 TTGE 242
T E
Sbjct: 234 WTFE 237
>3lyl_A 3-oxoacyl-(acyl-carrier-protein) reductase; alpha and beta protein,
NAD(P)-binding rossmann fold, csgid, oxidoreductase;
1.95A {Francisella tularensis subsp}
Length = 247
Score = 197 bits (504), Expect = 2e-63
Identities = 74/250 (29%), Positives = 125/250 (50%), Gaps = 8/250 (3%)
Query: 1 MNFTGKVILVTGASSGIGAATALHLAKLDAKLAITGRNVEQLDKVSESCQSVSKNKPLVI 60
M+ KV LVTGAS GIG A LA A + T + +K S + K +
Sbjct: 1 MSLNEKVALVTGASRGIGFEVAHALASKGATVVGTATSQASAEKFENSMKE-KGFKARGL 59
Query: 61 QADLTSEEDTKRIIDTVVKHYQKLNVLVNNAGILEAGSIENTSLEQYDKIMNVNVRSIYH 120
+++ E + + +++LVNNAGI + S +++ ++N N+ SI+
Sbjct: 60 VLNISDIESIQNFFAEIKAENLAIDILVNNAGITRDNLMMRMSEDEWQSVINTNLSSIFR 119
Query: 121 LTMLAVPHLISTK-GNIVNVSSVNGLRSFPGVLAYCVSKAAVDQFTSCTALELASKGVRV 179
++ V ++ + G I+++ SV G PG YC +KA V F+ A E+AS+ + V
Sbjct: 120 MSKECVRGMMKKRWGRIISIGSVVGSAGNPGQTNYCAAKAGVIGFSKSLAYEVASRNITV 179
Query: 180 NSVNPGVTLTNLHKNSGIDQQAYQNFLERSKETHALGRVGNPEEVAKAIAFLASDDASFT 239
N V PG T++ + + + G++G P+++A A+AFLAS++A +
Sbjct: 180 NVVAPGFIATDM--TDKLTDEQKSFIATKI----PSGQIGEPKDIAAAVAFLASEEAKYI 233
Query: 240 TGEHLTVDGG 249
TG+ L V+GG
Sbjct: 234 TGQTLHVNGG 243
>2c07_A 3-oxoacyl-(acyl-carrier protein) reductase; oxidoreductase, FABG,
short-chain alcohol reductase, fatty acid biosynthesis,
apicoplast; 1.5A {Plasmodium falciparum} SCOP: c.2.1.2
Length = 285
Score = 198 bits (506), Expect = 3e-63
Identities = 76/256 (29%), Positives = 128/256 (50%), Gaps = 11/256 (4%)
Query: 1 MNFTGKVILVTGASSGIGAATALHLAKLDAKLAITGRNVEQLDKVSESCQSVSKNKPLVI 60
KV LVTGA GIG A LAK + + R + D V + +S +
Sbjct: 40 YCGENKVALVTGAGRGIGREIAKMLAKSVSHVICISRTQKSCDSVVDEIKS-FGYESSGY 98
Query: 61 QADLTSEEDTKRIIDTVVKHYQKLNVLVNNAGILEAGSIENTSLEQYDKIMNVNVRSIYH 120
D++ +E+ +I+ ++ ++ +++LVNNAGI ++++ ++ N+ S+++
Sbjct: 99 AGDVSKKEEISEVINKILTEHKNVDILVNNAGITRDNLFLRMKNDEWEDVLRTNLNSLFY 158
Query: 121 LTMLAVPHLISTK-GNIVNVSSVNGLRSFPGVLAYCVSKAAVDQFTSCTALELASKGVRV 179
+T +I+ + G I+N+SS+ GL G Y SKA V FT A ELAS+ + V
Sbjct: 159 ITQPISKRMINNRYGRIINISSIVGLTGNVGQANYSSSKAGVIGFTKSLAKELASRNITV 218
Query: 180 NSVNPGVTLTNLHKNSGIDQQAYQNFLERSKETHALGRVGNPEEVAKAIAFLASDDASFT 239
N++ PG +++ I +Q +N + GR+G PEEVA FL+SD + +
Sbjct: 219 NAIAPGFISSDM--TDKISEQIKKNIISNI----PAGRMGTPEEVANLACFLSSDKSGYI 272
Query: 240 TGEHLTVDGGRHAMCP 255
G +DGG + P
Sbjct: 273 NGRVFVIDGG---LSP 285
>2pnf_A 3-oxoacyl-[acyl-carrier-protein] reductase; short chain
oxidoreductase, rossmann fold, oxidoreductase; HET: 1PE
MES; 1.80A {Aquifex aeolicus} PDB: 2p68_A*
Length = 248
Score = 197 bits (503), Expect = 3e-63
Identities = 85/250 (34%), Positives = 135/250 (54%), Gaps = 7/250 (2%)
Query: 1 MNFTGKVILVTGASSGIGAATALHLAKLDAKLAITGRNVEQLDKVSESCQSVSKNKPLVI 60
+ GKV LVTG++ GIG A A LA + + ITG + E+ V+E + K +
Sbjct: 3 IKLQGKVSLVTGSTRGIGRAIAEKLASAGSTVIITGTSGERAKAVAEEIANKYGVKAHGV 62
Query: 61 QADLTSEEDTKRIIDTVVKHYQKLNVLVNNAGILEAGSIENTSLEQYDKIMNVNVRSIYH 120
+ +L SEE + + + +++LVNNAGI SL +++++ VN+ +
Sbjct: 63 EMNLLSEESINKAFEEIYNLVDGIDILVNNAGITRDKLFLRMSLLDWEEVLKVNLTGTFL 122
Query: 121 LTMLAVPHLISTK-GNIVNVSSVNGLRSFPGVLAYCVSKAAVDQFTSCTALELASKGVRV 179
+T ++ +I + G IVN+SSV G G + Y +KA + FT A ELA + V V
Sbjct: 123 VTQNSLRKMIKQRWGRIVNISSVVGFTGNVGQVNYSTTKAGLIGFTKSLAKELAPRNVLV 182
Query: 180 NSVNPGVTLTNLHKNSGIDQQAYQNFLERSKETHALGRVGNPEEVAKAIAFLASDDASFT 239
N+V PG T++ + + ++ Q + E+ LGR G+PEEVA + FL S+ AS+
Sbjct: 183 NAVAPGFIETDM--TAVLSEEIKQKYKEQI----PLGRFGSPEEVANVVLFLCSELASYI 236
Query: 240 TGEHLTVDGG 249
TGE + V+GG
Sbjct: 237 TGEVIHVNGG 246
>1ooe_A Dihydropteridine reductase; structural genomics, PSI, protein
structure initiative, southeast collaboratory for
structural genomics; HET: MES; 1.65A {Caenorhabditis
elegans} SCOP: c.2.1.2
Length = 236
Score = 196 bits (500), Expect = 5e-63
Identities = 34/253 (13%), Positives = 83/253 (32%), Gaps = 32/253 (12%)
Query: 4 TGKVILVTGASSGIGAATALHLAKLDAKLAITGRNVEQLDKVSESCQSVSKNKPLVIQAD 63
+ ++V G +G+A K + + + +++ +
Sbjct: 2 SSGKVIVYGGKGALGSAILEFFKKNGYTVLNIDLSANDQA-----------DSNILVDGN 50
Query: 64 LTSEEDTKRIIDTVVK--HYQKLNVLVNNAGILEAGS-IENTSLEQYDKIMNVNVRSIYH 120
E + I++ +++ + AG GS ++ D ++ +V S
Sbjct: 51 KNWTEQEQSILEQTASSLQGSQVDGVFCVAGGWAGGSASSKDFVKNADLMIKQSVWSSAI 110
Query: 121 LTMLAVPHLISTKGNIVNVSSVNGLRSFPGVLAYCVSKAAVDQFTSCTALELAS--KGVR 178
LA HL G + + + P ++ Y ++KAAV TS A + +
Sbjct: 111 AAKLATTHL-KPGGLLQLTGAAAAMGPTPSMIGYGMAKAAVHHLTSSLAAKDSGLPDNSA 169
Query: 179 VNSVNPGVTLTNLHKNSGIDQQAYQNFLERSKETHALGRVGNPEEVAKAIAFLASDDASF 238
V ++ P T +++ + +++ + ++ +S
Sbjct: 170 VLTIMPVTLDTPMNRKWMPNADH--------------SSWTPLSFISEHLLKWTTETSSR 215
Query: 239 -TTGEHLTVDGGR 250
++G L +
Sbjct: 216 PSSGALLKITTEN 228
>3tjr_A Short chain dehydrogenase; structural genomics, seattle structural
genomics center for infectious disease, ssgcid, SCD,
NAD; HET: UNL; 1.60A {Mycobacterium avium subsp}
Length = 301
Score = 197 bits (504), Expect = 1e-62
Identities = 54/233 (23%), Positives = 100/233 (42%), Gaps = 7/233 (3%)
Query: 2 NFTGKVILVTGASSGIGAATALHLAKLDAKLAITGRNVEQLDKVSESCQSVSKNKPLVIQ 61
F G+ +VTG +SGIG ATA A+ A+L ++ + L++ + +
Sbjct: 28 GFDGRAAVVTGGASGIGLATATEFARRGARLVLSDVDQPALEQAVNGLRGQG-FDAHGVV 86
Query: 62 ADLTSEEDTKRIIDTVVKHYQKLNVLVNNAGILEAGSIENTSLEQYDKIMNVNVRSIYHL 121
D+ ++ R+ D + ++V+ +NAGI+ AG + + + + ++++++ H
Sbjct: 87 CDVRHLDEMVRLADEAFRLLGGVDVVFSNAGIVVAGPLAQMNHDDWRWVIDIDLWGSIHA 146
Query: 122 TMLAVPHLIS--TKGNIVNVSSVNGLRSFPGVLAYCVSKAAVDQFTSCTALELASKGVRV 179
+P L+ T G+I +S GL G+ Y V+K V A E+ G+ V
Sbjct: 147 VEAFLPRLLEQGTGGHIAFTASFAGLVPNAGLGTYGVAKYGVVGLAETLAREVKPNGIGV 206
Query: 180 NSVNPGVTLTNLHKNS----GIDQQAYQNFLERSKETHALGRVGNPEEVAKAI 228
+ + P V T L NS G D + ++VA+
Sbjct: 207 SVLCPMVVETKLVSNSERIRGADYGMSATPEGAFGPLPTQDESVSADDVARLT 259
>2ehd_A Oxidoreductase, oxidoreductase, short-chain dehydrogenase/reducta;
rossman fold, structural genomics, NPPSFA; 2.40A
{Thermus thermophilus}
Length = 234
Score = 195 bits (498), Expect = 1e-62
Identities = 64/234 (27%), Positives = 102/234 (43%), Gaps = 23/234 (9%)
Query: 1 MNFTGKVILVTGASSGIGAATALHLAKLDAKLAITGRNVEQLDKVSESCQSVSKNKPLVI 60
M +L+TGAS GIG ATA L ++ + R+ ++L ++ + L +
Sbjct: 1 MEGMKGAVLITGASRGIGEATARLLHAKGYRVGLMARDEKRLQALAAELEGA-----LPL 55
Query: 61 QADLTSEEDTKRIIDTVVKHYQKLNVLVNNAGILEAGSIENTSLEQYDKIMNVNVRSIYH 120
D+ E D R + + + + +L+ LVNNAG+ + +LE++ +++ N+ +
Sbjct: 56 PGDVREEGDWARAVAAMEEAFGELSALVNNAGVGVMKPVHELTLEEWRLVLDTNLTGAFL 115
Query: 121 LTMLAVPHLISTK-GNIVNVSSVNGLRSFPGVLAYCVSKAAVDQFTSCTALELASKGVRV 179
AVP L+ G IVNV S+ G F G AY SK + L+L VRV
Sbjct: 116 GIRHAVPALLRRGGGTIVNVGSLAGKNPFKGGAAYNASKFGLLGLAGAAMLDLREANVRV 175
Query: 180 NSVNPGVTLTNLHKNSGIDQQAYQNFLERSKETHALGRVGNPEEVAKAIAFLAS 233
+V PG T N + L PE+VA+A+ F
Sbjct: 176 VNVLPGSVDTGFAGN-------------TPGQAWKL----KPEDVAQAVLFALE 212
>3ftp_A 3-oxoacyl-[acyl-carrier protein] reductase; ssgcid,
3-ketoacyl-(acyl-carrier- protein) reductase,
oxidoreductase, structural genomics; 2.05A {Burkholderia
pseudomallei}
Length = 270
Score = 196 bits (501), Expect = 1e-62
Identities = 78/250 (31%), Positives = 130/250 (52%), Gaps = 8/250 (3%)
Query: 1 MNFTGKVILVTGASSGIGAATALHLAKLDAKLAITGRNVEQLDKVSESCQSVSKNKPLVI 60
+V +VTGAS GIG A AL LA+ A + T + + + + + +
Sbjct: 24 KTLDKQVAIVTGASRGIGRAIALELARRGAMVIGTATTEAGAEGIGAAFKQ-AGLEGRGA 82
Query: 61 QADLTSEEDTKRIIDTVVKHYQKLNVLVNNAGILEAGSIENTSLEQYDKIMNVNVRSIYH 120
++ ++++ +K + LNVLVNNAGI + +++D +++ N+++++
Sbjct: 83 VLNVNDATAVDALVESTLKEFGALNVLVNNAGITQDQLAMRMKDDEWDAVIDTNLKAVFR 142
Query: 121 LTMLAVPHLISTK-GNIVNVSSVNGLRSFPGVLAYCVSKAAVDQFTSCTALELASKGVRV 179
L+ + ++ + G IVN++SV G PG + Y +KA V T A E+ S+G+ V
Sbjct: 143 LSRAVLRPMMKARGGRIVNITSVVGSAGNPGQVNYAAAKAGVAGMTRALAREIGSRGITV 202
Query: 180 NSVNPGVTLTNLHKNSGIDQQAYQNFLERSKETHALGRVGNPEEVAKAIAFLASDDASFT 239
N V PG T++ K +QQ K LGR+G+PE++A A+AFLAS A +
Sbjct: 203 NCVAPGFIDTDMTKGLPQEQQ------TALKTQIPLGRLGSPEDIAHAVAFLASPQAGYI 256
Query: 240 TGEHLTVDGG 249
TG L V+GG
Sbjct: 257 TGTTLHVNGG 266
>3i4f_A 3-oxoacyl-[acyl-carrier protein] reductase; structural genomics,
3-oxoacyl-reductase, PSI-2; 2.39A {Bacillus
thuringiensis serovar kurstakorganism_taxid}
Length = 264
Score = 195 bits (499), Expect = 2e-62
Identities = 59/255 (23%), Positives = 118/255 (46%), Gaps = 13/255 (5%)
Query: 1 MNFTGKVILVTGASSGIGAATALHLAKLDAKLAITGR-NVEQLDKVSESCQSVSKNKPLV 59
+ + L+T + G+G L + +T + ++ + E+ + + +
Sbjct: 3 LGRFVRHALITAGTKGLGKQVTEKLLAKGYSVTVTYHSDTTAMETMKETYKD-VEERLQF 61
Query: 60 IQADLTSEEDTKRIIDTVVKHYQKLNVLVNNAG--ILEAGSIENTSLEQYDKIMNVNVRS 117
+QAD+T +ED +I++ + H+ K++ L+NNAG + E + + +++++++ N+ +
Sbjct: 62 VQADVTKKEDLHKIVEEAMSHFGKIDFLINNAGPYVFERKKLVDYEEDEWNEMIQGNLTA 121
Query: 118 IYHLTMLAVPHLISTK-GNIVNVS--SVNGLRSFPGVLAYCVSKAAVDQFTSCTALELAS 174
++HL L VP + G I+N + + A+ +K + T A E A
Sbjct: 122 VFHLLKLVVPVMRKQNFGRIINYGFQGADSAPGWIYRSAFAAAKVGLVSLTKTVAYEEAE 181
Query: 175 KGVRVNSVNPGVTLTNLHKNSGIDQQAYQNFLERSKETHALGRVGNPEEVAKAIAFLASD 234
G+ N V PG + + Q+A Q + +GR G E++A+ I+FL D
Sbjct: 182 YGITANMVCPGDIIGEM--KEATIQEARQLKEHNT----PIGRSGTGEDIARTISFLCED 235
Query: 235 DASFTTGEHLTVDGG 249
D+ TG + V G
Sbjct: 236 DSDMITGTIIEVTGA 250
>2uvd_A 3-oxoacyl-(acyl-carrier-protein) reductase; beta-ketoacyl- (acyl
carrier protein) reductase, short-chain
dehydrogenase/reductase (SDR); 2.4A {Bacillus anthracis}
Length = 246
Score = 193 bits (492), Expect = 1e-61
Identities = 74/249 (29%), Positives = 132/249 (53%), Gaps = 9/249 (3%)
Query: 3 FTGKVILVTGASSGIGAATALHLAKLDAKLAI-TGRNVEQLDKVSESCQSVSKNKPLVIQ 61
GKV LVTGAS GIG A A+ LAK A + + N ++ ++V + + + + ++
Sbjct: 2 LKGKVALVTGASRGIGRAIAIDLAKQGANVVVNYAGNEQKANEVVDEIKK-LGSDAIAVR 60
Query: 62 ADLTSEEDTKRIIDTVVKHYQKLNVLVNNAGILEAGSIENTSLEQYDKIMNVNVRSIYHL 121
AD+ + ED ++ V + ++++LVNNAG+ + + E++D ++N N++ ++
Sbjct: 61 ADVANAEDVTNMVKQTVDVFGQVDILVNNAGVTKDNLLMRMKEEEWDTVINTNLKGVFLC 120
Query: 122 TMLAVPHLISTK-GNIVNVSSVNGLRSFPGVLAYCVSKAAVDQFTSCTALELASKGVRVN 180
T ++ + G IVN++SV G+ PG Y +KA V T +A ELAS+ + VN
Sbjct: 121 TKAVSRFMMRQRHGRIVNIASVVGVTGNPGQANYVAAKAGVIGLTKTSAKELASRNITVN 180
Query: 181 SVNPGVTLTNLHKNSGIDQQAYQNFLERSKETHALGRVGNPEEVAKAIAFLASDDASFTT 240
++ PG T++ + + + + G +++A A+ F ASD + + T
Sbjct: 181 AIAPGFIATDMTDVLDENIK------AEMLKLIPAAQFGEAQDIANAVTFFASDQSKYIT 234
Query: 241 GEHLTVDGG 249
G+ L VDGG
Sbjct: 235 GQTLNVDGG 243
>3grp_A 3-oxoacyl-(acyl carrierprotein) reductase; structural genomics,
oxidoreductase, S structural genomics center for
infectious disease, ssgcid; 2.09A {Bartonella henselae}
PDB: 3enn_A 3emk_A
Length = 266
Score = 193 bits (492), Expect = 2e-61
Identities = 70/250 (28%), Positives = 125/250 (50%), Gaps = 11/250 (4%)
Query: 1 MNFTGKVILVTGASSGIGAATALHLAKLDAKLAITGRNVEQLDKVSESCQSVSKNKPLVI 60
TG+ LVTGA+ GIG A A A + + G ++L +++ V
Sbjct: 23 FKLTGRKALVTGATGGIGEAIARCFHAQGAIVGLHGTREDKLKEIAADL----GKDVFVF 78
Query: 61 QADLTSEEDTKRIIDTVVKHYQKLNVLVNNAGILEAGSIENTSLEQYDKIMNVNVRSIYH 120
A+L+ + K++ + + + +++LVNNAGI G + +D ++ VN+ +
Sbjct: 79 SANLSDRKSIKQLAEVAEREMEGIDILVNNAGITRDGLFVRMQDQDWDDVLAVNLTAAST 138
Query: 121 LTMLAVPHLISTK-GNIVNVSSVNGLRSFPGVLAYCVSKAAVDQFTSCTALELASKGVRV 179
LT + ++ + G I+N++S+ G+ PG YC +KA + F+ A E+AS+ + V
Sbjct: 139 LTRELIHSMMRRRYGRIINITSIVGVVGNPGQTNYCAAKAGLIGFSKALAQEIASRNITV 198
Query: 180 NSVNPGVTLTNLHKNSGIDQQAYQNFLERSKETHALGRVGNPEEVAKAIAFLASDDASFT 239
N + PG + + Q+ E + R+G EE+A A +LASD+A++
Sbjct: 199 NCIAPGFIKSAMTDKLNEKQK------EAIMAMIPMKRMGIGEEIAFATVYLASDEAAYL 252
Query: 240 TGEHLTVDGG 249
TG+ L ++GG
Sbjct: 253 TGQTLHINGG 262
>3osu_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics,
csgid, center for structural genomics O infectious
diseases; 1.90A {Staphylococcus aureus subsp} PDB:
3sj7_A*
Length = 246
Score = 191 bits (488), Expect = 5e-61
Identities = 80/248 (32%), Positives = 131/248 (52%), Gaps = 9/248 (3%)
Query: 4 TGKVILVTGASSGIGAATALHLAKLDAKLAI-TGRNVEQLDKVSESCQSVSKNKPLVIQA 62
K LVTGAS GIG + AL LA+ +A+ + E+ + V E ++ IQA
Sbjct: 3 MTKSALVTGASRGIGRSIALQLAEEGYNVAVNYAGSKEKAEAVVEEIKA-KGVDSFAIQA 61
Query: 63 DLTSEEDTKRIIDTVVKHYQKLNVLVNNAGILEAGSIENTSLEQYDKIMNVNVRSIYHLT 122
++ ++ K +I VV + L+VLVNNAGI + +++D +++ N++ +++
Sbjct: 62 NVADADEVKAMIKEVVSQFGSLDVLVNNAGITRDNLLMRMKEQEWDDVIDTNLKGVFNCI 121
Query: 123 MLAVPHLISTK-GNIVNVSSVNGLRSFPGVLAYCVSKAAVDQFTSCTALELASKGVRVNS 181
A P ++ + G I+N+SSV G PG Y +KA V T A ELAS+G+ VN+
Sbjct: 122 QKATPQMLRQRSGAIINLSSVVGAVGNPGQANYVATKAGVIGLTKSAARELASRGITVNA 181
Query: 182 VNPGVTLTNLHKNSGIDQQAYQNFLERSKETHALGRVGNPEEVAKAIAFLASDDASFTTG 241
V PG ++++ + + E+ L R G ++A +AFLASD A + TG
Sbjct: 182 VAPGFIVSDMTDALSDELK------EQMLTQIPLARFGQDTDIANTVAFLASDKAKYITG 235
Query: 242 EHLTVDGG 249
+ + V+GG
Sbjct: 236 QTIHVNGG 243
>3kvo_A Hydroxysteroid dehydrogenase-like protein 2; HSDL2, human
hydroxysteroid dehydrogenase like 2, SDHL2, STR
genomics, structural genomics consortium; HET: NAP;
2.25A {Homo sapiens}
Length = 346
Score = 194 bits (495), Expect = 7e-61
Identities = 59/256 (23%), Positives = 103/256 (40%), Gaps = 24/256 (9%)
Query: 2 NFTGKVILVTGASSGIGAATALHLAKLDAKLAITGRNVEQLDKVSESCQSVSKN------ 55
G + +TGAS GIG A AL AK A + I + + K+ + + ++
Sbjct: 42 RLAGCTVFITGASRGIGKAIALKAAKDGANIVIAAKTAQPHPKLLGTIYTAAEEIEAVGG 101
Query: 56 KPLVIQADLTSEEDTKRIIDTVVKHYQKLNVLVNNAGILEAGSIENTSLEQYDKIMNVNV 115
K L D+ E+ ++ +K + +++LVNNA + + +T ++ D +MNVN
Sbjct: 102 KALPCIVDVRDEQQISAAVEKAIKKFGGIDILVNNASAISLTNTLDTPTKRLDLMMNVNT 161
Query: 116 RSIYHLTMLAVPHLI-STKGNIVNVSSVNGLRS--FPGVLAYCVSKAAVDQFTSCTALEL 172
R Y + +P+L S +I+N+S L F AY ++K + + A E
Sbjct: 162 RGTYLASKACIPYLKKSKVAHILNISPPLNLNPVWFKQHCAYTIAKYGMSMYVLGMAEEF 221
Query: 173 ASKGVRVNSVNPGVTLTNLHKNSGIDQQAYQNFLERSKETHALGRVGNPEEVAKAIAFLA 232
+ VN++ P I A E+ + +A A +
Sbjct: 222 KG-EIAVNALWPKTA---------IHTAAMDMLGGPGIESQC----RKVDIIADAAYSIF 267
Query: 233 SDDASFTTGEHLTVDG 248
SF TG + +
Sbjct: 268 QKPKSF-TGNFVIDEN 282
>3guy_A Short-chain dehydrogenase/reductase SDR; structural genomics,
oxidoreductase, PSI-2, protein structur initiative;
1.90A {Vibrio parahaemolyticus}
Length = 230
Score = 190 bits (484), Expect = 1e-60
Identities = 49/228 (21%), Positives = 88/228 (38%), Gaps = 21/228 (9%)
Query: 6 KVILVTGASSGIGAATALHLAKLDAKLAITGRNVEQLDKVSESCQSVSKNKPLVIQADLT 65
+I++TGASSG+GA A +TGR+ +L V+ + DL
Sbjct: 2 SLIVITGASSGLGAELAKLYDAEGKATYLTGRSESKLSTVTNCLSN----NVGYRARDLA 57
Query: 66 SEEDTKRIIDTVVKHYQKLNVLVNNAGILEAGSIENTSLEQYDKIMNVNVRSIYHLTMLA 125
S ++ +++ + + + +V++AG G ++ EQ ++ N+ S ++
Sbjct: 58 SHQEVEQLFEQL---DSIPSTVVHSAGSGYFGLLQEQDPEQIQTLIENNLSSAINVLREL 114
Query: 126 VPHLISTKGNIVNVSSVNGLRSFPGVLAYCVSKAAVDQFTSCTALELASKGVRVNSVNPG 185
V N+V + S + YC K AV LEL K +++ +V PG
Sbjct: 115 VKRYKDQPVNVVMIMSTAAQQPKAQESTYCAVKWAVKGLIESVRLELKGKPMKIIAVYPG 174
Query: 186 VTLTNLHKNSGIDQQAYQNFLERSKETHALGRVGNPEEVAKAIAFLAS 233
T F E S ++ + E+ A I +
Sbjct: 175 GMAT--------------EFWETSGKSLDTSSFMSAEDAALMIHGALA 208
>2ph3_A 3-oxoacyl-[acyl carrier protein] reductase; TTHA0415, structural
genomics, southea collaboratory for structural genomics,
secsg; 1.91A {Thermus thermophilus HB8}
Length = 245
Score = 190 bits (486), Expect = 1e-60
Identities = 85/246 (34%), Positives = 129/246 (52%), Gaps = 8/246 (3%)
Query: 6 KVILVTGASSGIGAATALHLAKLDAKLAI-TGRNVEQLDKVSESCQSVSKNKPLVIQADL 64
+ L+TGAS GIG A AL LA+ LAI G+N E+ ++V+E + V+ A+L
Sbjct: 2 RKALITGASRGIGRAIALRLAEDGFALAIHYGQNREKAEEVAEEARRRGSPLVAVLGANL 61
Query: 65 TSEEDTKRIIDTVVKHYQKLNVLVNNAGILEAGSIENTSLEQYDKIMNVNVRSIYHLTML 124
E ++ + L+ LVNNAGI + E ++ ++ N+ +++ T
Sbjct: 62 LEAEAATALVHQAAEVLGGLDTLVNNAGITRDTLLVRMKDEDWEAVLEANLSAVFRTTRE 121
Query: 125 AVPHLISTK-GNIVNVSSVNGLRSFPGVLAYCVSKAAVDQFTSCTALELASKGVRVNSVN 183
AV ++ + G IVN++SV G+ PG Y SKA + FT A E A +G+ VN+V
Sbjct: 122 AVKLMMKARFGRIVNITSVVGILGNPGQANYVASKAGLIGFTRAVAKEYAQRGITVNAVA 181
Query: 184 PGVTLTNLHKNSGIDQQAYQNFLERSKETHALGRVGNPEEVAKAIAFLASDDASFTTGEH 243
PG T + + + + E + GR G PEEVA+A+AFL S+ A + TG+
Sbjct: 182 PGFIETEMTERLPQEVK------EAYLKQIPAGRFGRPEEVAEAVAFLVSEKAGYITGQT 235
Query: 244 LTVDGG 249
L VDGG
Sbjct: 236 LCVDGG 241
>3gk3_A Acetoacetyl-COA reductase; acetoacetyl-CO reductase,
oxidoreductase, structural genomics; 2.10A {Burkholderia
pseudomallei 1710B}
Length = 269
Score = 191 bits (488), Expect = 1e-60
Identities = 73/248 (29%), Positives = 121/248 (48%), Gaps = 8/248 (3%)
Query: 4 TGKVILVTGASSGIGAATALHLAKLDAKLAITG-RNVEQLDKVSESCQSVSKNKPLVIQA 62
+V VTG G+GAA + L +A++ + + + +
Sbjct: 24 AKRVAFVTGGMGGLGAAISRRLHDAGMAVAVSHSERNDHVSTWLMHERDAGR-DFKAYAV 82
Query: 63 DLTSEEDTKRIIDTVVKHYQKLNVLVNNAGILEAGSIENTSLEQYDKIMNVNVRSIYHLT 122
D+ E +R + V+ + K++VL+NNAGI + + +D +M ++ +++++T
Sbjct: 83 DVADFESCERCAEKVLADFGKVDVLINNAGITRDATFMKMTKGDWDAVMRTDLDAMFNVT 142
Query: 123 MLAVPHLISTK-GNIVNVSSVNGLRSFPGVLAYCVSKAAVDQFTSCTALELASKGVRVNS 181
+ ++ + G IVN+ SVNG R G Y +KA + FT ALE A +G+ VN+
Sbjct: 143 KQFIAGMVERRFGRIVNIGSVNGSRGAFGQANYASAKAGIHGFTKTLALETAKRGITVNT 202
Query: 182 VNPGVTLTNLHKNSGIDQQAYQNFLERSKETHALGRVGNPEEVAKAIAFLASDDASFTTG 241
V+PG T + + D + +GR+G P+EVA IAFL SDDA F TG
Sbjct: 203 VSPGYLATAMVEAVPQDVLE-----AKILPQIPVGRLGRPDEVAALIAFLCSDDAGFVTG 257
Query: 242 EHLTVDGG 249
L ++GG
Sbjct: 258 ADLAINGG 265
>3f9i_A 3-oxoacyl-[acyl-carrier-protein] reductase;
3-ketoacyl-(acyl-carrier-protein) reductase, FAT
biosynthesis, lipid synthesis, NADP; 2.25A {Rickettsia
prowazekii}
Length = 249
Score = 190 bits (484), Expect = 2e-60
Identities = 84/250 (33%), Positives = 140/250 (56%), Gaps = 15/250 (6%)
Query: 1 MNFTGKVILVTGASSGIGAATALHLAKLDAKLAITGRNVEQLDKVSESCQSVSKNKPLVI 60
++ TGK L+TGASSGIG+A A L KL +K+ I+G N E+L + + K+ +
Sbjct: 10 IDLTGKTSLITGASSGIGSAIARLLHKLGSKVIISGSNEEKLKSLGNAL----KDNYTIE 65
Query: 61 QADLTSEEDTKRIIDTVVKHYQKLNVLVNNAGILEAGSIENTSLEQYDKIMNVNVRSIYH 120
+L ++E+ ++ L++LV NAGI + +DK++++N+++ +
Sbjct: 66 VCNLANKEE----CSNLISKTSNLDILVCNAGITSDTLAIRMKDQDFDKVIDINLKANFI 121
Query: 121 LTMLAVPHLISTK-GNIVNVSSVNGLRSFPGVLAYCVSKAAVDQFTSCTALELASKGVRV 179
L A+ +I + G I+N+SS+ G+ PG YC SKA + T + E+A++G+ V
Sbjct: 122 LNREAIKKMIQKRYGRIINISSIVGIAGNPGQANYCASKAGLIGMTKSLSYEVATRGITV 181
Query: 180 NSVNPGVTLTNLHKNSGIDQQAYQNFLERSKETHALGRVGNPEEVAKAIAFLASDDASFT 239
N+V PG +++ Q+ E + LG G PE+VA A+AFLAS++AS+
Sbjct: 182 NAVAPGFIKSDMTDKLNEKQR------EAIVQKIPLGTYGIPEDVAYAVAFLASNNASYI 235
Query: 240 TGEHLTVDGG 249
TG+ L V+GG
Sbjct: 236 TGQTLHVNGG 245
>2nm0_A Probable 3-oxacyl-(acyl-carrier-protein) reductas; oxidoreductase;
1.99A {Streptomyces coelicolor}
Length = 253
Score = 189 bits (483), Expect = 4e-60
Identities = 75/250 (30%), Positives = 116/250 (46%), Gaps = 19/250 (7%)
Query: 1 MNFTGKVILVTGASSGIGAATALHLAKLDAKLAITGRNVEQLDKVSESCQSVSKNKPLVI 60
+ + +LVTG + GIG A A A K+AIT R+ E + L +
Sbjct: 17 RSHMSRSVLVTGGNRGIGLAIARAFADAGDKVAITYRSGEPPEGF------------LAV 64
Query: 61 QADLTSEEDTKRIIDTVVKHYQKLNVLVNNAGILEAGSIENTSLEQYDKIMNVNVRSIYH 120
+ D+T E ++ + + + + VL+ NAG+ + + S E + ++ N+ +
Sbjct: 65 KCDITDTEQVEQAYKEIEETHGPVEVLIANAGVTKDQLLMRMSEEDFTSVVETNLTGTFR 124
Query: 121 LTMLAVPHLISTK-GNIVNVSSVNGLRSFPGVLAYCVSKAAVDQFTSCTALELASKGVRV 179
+ A ++ K G +V +SSV GL G Y SKA + F A EL S+ +
Sbjct: 125 VVKRANRAMLRAKKGRVVLISSVVGLLGSAGQANYAASKAGLVGFARSLARELGSRNITF 184
Query: 180 NSVNPGVTLTNLHKNSGIDQQAYQNFLERSKETHALGRVGNPEEVAKAIAFLASDDASFT 239
N V PG T++ K +Q+ LGR PEE+A + FLASDDAS+
Sbjct: 185 NVVAPGFVDTDMTKVLTDEQR------ANIVSQVPLGRYARPEEIAATVRFLASDDASYI 238
Query: 240 TGEHLTVDGG 249
TG + VDGG
Sbjct: 239 TGAVIPVDGG 248
>4dmm_A 3-oxoacyl-[acyl-carrier-protein] reductase; rossmann fold,
oxoacyl-ACP reductase, NADP binding, fatty AC
biosynthsis, oxidoreductase; HET: NAP; 2.38A
{Synechococcus elongatus} PDB: 4dml_A*
Length = 269
Score = 190 bits (484), Expect = 4e-60
Identities = 79/252 (31%), Positives = 134/252 (53%), Gaps = 13/252 (5%)
Query: 1 MNFTGKVILVTGASSGIGAATALHLAKLDAKLAIT-GRNVEQLDKVSESCQSVSKNKPLV 59
+ T ++ LVTGAS GIG A AL LA AK+A+ + D+V + + + +
Sbjct: 24 LPLTDRIALVTGASRGIGRAIALELAAAGAKVAVNYASSAGAADEVVAAIAA-AGGEAFA 82
Query: 60 IQADLTSEEDTKRIIDTVVKHYQKLNVLVNNAGILEAGSIENTSLEQYDKIMNVNVRSIY 119
++AD++ E + + + V++ + +L+VLVNNAGI + + + ++++N+ ++
Sbjct: 83 VKADVSQESEVEALFAAVIERWGRLDVLVNNAGITRDTLLLRMKRDDWQSVLDLNLGGVF 142
Query: 120 HLTMLAVPHLISTK-GNIVNVSSVNGLRSFPGVLAYCVSKAAVDQFTSCTALELASKGVR 178
+ A ++ + G I+N++SV G PG Y +KA V T A ELAS+G+
Sbjct: 143 LCSRAAAKIMLKQRSGRIINIASVVGEMGNPGQANYSAAKAGVIGLTKTVAKELASRGIT 202
Query: 179 VNSVNPGVTLTNLHKNSGIDQQAYQNFLERSKETHALGRVGNPEEVAKAIAFLASDD-AS 237
VN+V PG T++ S + + E LGR G EVA + FLA+D A+
Sbjct: 203 VNAVAPGFIATDM--TSELAAEKL-------LEVIPLGRYGEAAEVAGVVRFLAADPAAA 253
Query: 238 FTTGEHLTVDGG 249
+ TG+ + +DGG
Sbjct: 254 YITGQVINIDGG 265
>3ppi_A 3-hydroxyacyl-COA dehydrogenase type-2; ssgcid, dehydrogenas
mycobacterium avium, structural genomics; 2.00A
{Mycobacterium avium}
Length = 281
Score = 189 bits (482), Expect = 1e-59
Identities = 58/269 (21%), Positives = 111/269 (41%), Gaps = 26/269 (9%)
Query: 1 MNFTGKVILVTGASSGIGAATALHLAKLDAKLAITGRNVEQLDKVSESCQSVSKNKPLVI 60
F G +V+G + G+G AT L + I E+ +++ + + +
Sbjct: 26 KQFEGASAIVSGGAGGLGEATVRRLHADGLGVVIADLAAEKGKALADELGN----RAEFV 81
Query: 61 QADLTSEEDTKRIIDTVVKHYQKLNVLVNNAGILEAGSI-----ENTSLEQYDKIMNVNV 115
++TSE+ I+ + + +V + G A I + + K +++ +
Sbjct: 82 STNVTSEDSVLAAIEAANQLGRLRYAVVAHGGFGVAQRIVQRDGSPADMGGFTKTIDLYL 141
Query: 116 RSIYHLTMLAVPHLIST-------KGNIVNVSSVNGLRSFPGVLAYCVSKAAVDQFTSCT 168
Y++ L + + +G +V +S+ G G AY +KA V T
Sbjct: 142 NGTYNVARLVAASIAAAEPRENGERGALVLTASIAGYEGQIGQTAYAAAKAGVIGLTIAA 201
Query: 169 ALELASKGVRVNSVNPGVTLTNLHKNSGIDQQAYQNFLERSKETHAL-GRVGNPEEVAKA 227
A +L+S G+RVN++ PG T + + + L + R+G P+E A A
Sbjct: 202 ARDLSSAGIRVNTIAPGTMKTPIM------ESVGEEALAKFAANIPFPKRLGTPDEFADA 255
Query: 228 IAFLASDDASFTTGEHLTVDGGRHAMCPR 256
AFL ++ + GE + +DG + P+
Sbjct: 256 AAFLLTN--GYINGEVMRLDGAQR-FTPK 281
>2jah_A Clavulanic acid dehydrogenase; short-chain dehydrogenase/reductase,
lactamase inhibitor, AN biosynthesis, NADPH,
oxidoreductase; HET: MSE NDP; 1.80A {Streptomyces
clavuligerus} PDB: 2jap_A*
Length = 247
Score = 186 bits (475), Expect = 5e-59
Identities = 68/234 (29%), Positives = 122/234 (52%), Gaps = 10/234 (4%)
Query: 2 NFTGKVILVTGASSGIGAATALHLAKLDAKLAITGRNVEQLDKVSESCQSVSKNKPLVIQ 61
GKV L+TGASSGIG ATA LA A +AI R VE+L + + + + K V++
Sbjct: 4 ALQGKVALITGASSGIGEATARALAAEGAAVAIAARRVEKLRALGDELTA-AGAKVHVLE 62
Query: 62 ADLTSEEDTKRIIDTVVKHYQKLNVLVNNAGILEAGSIENTSLEQYDKIMNVNVRSIYHL 121
D+ + + + V+ L++LVNNAGI+ G +E+ + ++++ N+ + ++
Sbjct: 63 LDVADRQGVDAAVASTVEALGGLDILVNNAGIMLLGPVEDADTTDWTRMIDTNLLGLMYM 122
Query: 122 TMLAVPHLISTKGNIVNVSSVNGLRSFPGVLAYCVSKAAVDQFTSCTALELASKGVRVNS 181
T A+PHL+ +KG +V +SS+ G + Y +K V+ F+ E+ +GVRV
Sbjct: 123 TRAALPHLLRSKGTVVQMSSIAGRVNVRNAAVYQATKFGVNAFSETLRQEVTERGVRVVV 182
Query: 182 VNPGVTLTNLHKNS--GIDQQAYQNFLERSKETHALGRVGNPEEVAKAIAFLAS 233
+ PG T T L + ++ Y+ + + L +++A+A+ + +
Sbjct: 183 IEPGTTDTELRGHITHTATKEMYEQRIS---QIRKL----QAQDIAEAVRYAVT 229
>1yb1_A 17-beta-hydroxysteroid dehydrogenase type XI; short chain
dehydrogenase, HUM structural genomics, structural
genomics consortium, SGC; HET: AE2; 1.95A {Homo sapiens}
SCOP: c.2.1.2
Length = 272
Score = 186 bits (475), Expect = 9e-59
Identities = 69/231 (29%), Positives = 104/231 (45%), Gaps = 21/231 (9%)
Query: 2 NFTGKVILVTGASSGIGAATALHLAKLDAKLAITGRNVEQLDKVSESCQSVSKNKPLVIQ 61
+ TG+++L+TGA GIG TA AKL +KL + N L++ + C+ + K
Sbjct: 28 SVTGEIVLITGAGHGIGRLTAYEFAKLKSKLVLWDINKHGLEETAAKCKGLG-AKVHTFV 86
Query: 62 ADLTSEEDTKRIIDTVVKHYQKLNVLVNNAGILEAGSIENTSLEQYDKIMNVNVRSIYHL 121
D ++ ED V +++LVNNAG++ + T Q +K VNV + +
Sbjct: 87 VDCSNREDIYSSAKKVKAEIGDVSILVNNAGVVYTSDLFATQDPQIEKTFEVNVLAHFWT 146
Query: 122 TMLAVPHLI-STKGNIVNVSSVNGLRSFPGVLAYCVSKAAVDQFTSCTALELAS---KGV 177
T +P + + G+IV V+S G S P +LAYC SK A F ELA+ GV
Sbjct: 147 TKAFLPAMTKNNHGHIVTVASAAGHVSVPFLLAYCSSKFAAVGFHKTLTDELAALQITGV 206
Query: 178 RVNSVNPGVTLTNLHKNSGIDQQAYQNFLERSKETHALGRVGNPEEVAKAI 228
+ + P T KN + +LG PEEV +
Sbjct: 207 KTTCLCPNFVNTGFIKNP----------------STSLGPTLEPEEVVNRL 241
>1uzm_A 3-oxoacyl-[acyl-carrier protein] reductase; beta-ketoacyl
reductase, oxidoreductase; 1.49A {Mycobacterium
tuberculosis} SCOP: c.2.1.2 PDB: 1uzn_A* 2ntn_A 1uzl_A
Length = 247
Score = 185 bits (473), Expect = 1e-58
Identities = 72/250 (28%), Positives = 114/250 (45%), Gaps = 19/250 (7%)
Query: 1 MNFTGKVILVTGASSGIGAATALHLAKLDAKLAITGRNVEQLDKVSESCQSVSKNKPLVI 60
F + +LVTG + GIG A A LA K+A+T R + +
Sbjct: 11 PPFVSRSVLVTGGNRGIGLAIAQRLAADGHKVAVTHRGSGAPKGL------------FGV 58
Query: 61 QADLTSEEDTKRIIDTVVKHYQKLNVLVNNAGILEAGSIENTSLEQYDKIMNVNVRSIYH 120
+ D+T + R V +H + VLV+NAG+ + + E+++K++N N+ +
Sbjct: 59 EVDVTDSDAVDRAFTAVEEHQGPVEVLVSNAGLSADAFLMRMTEEKFEKVINANLTGAFR 118
Query: 121 LTMLAVPHLISTK-GNIVNVSSVNGLRSFPGVLAYCVSKAAVDQFTSCTALELASKGVRV 179
+ A + K G ++ + SV+GL Y SKA V A EL+ V
Sbjct: 119 VAQRASRSMQRNKFGRMIFIGSVSGLWGIGNQANYAASKAGVIGMARSIARELSKANVTA 178
Query: 180 NSVNPGVTLTNLHKNSGIDQQAYQNFLERSKETHALGRVGNPEEVAKAIAFLASDDASFT 239
N V PG T++ + Q + + + RVG P EVA ++FLAS+DAS+
Sbjct: 179 NVVAPGYIDTDMTRALDERIQ------QGALQFIPAKRVGTPAEVAGVVSFLASEDASYI 232
Query: 240 TGEHLTVDGG 249
+G + VDGG
Sbjct: 233 SGAVIPVDGG 242
>1edo_A Beta-keto acyl carrier protein reductase; nucleotide fold, rossmann
fold, oxidoreductase; HET: NAP; 2.30A {Brassica napus}
SCOP: c.2.1.2 PDB: 2cdh_G
Length = 244
Score = 184 bits (471), Expect = 2e-58
Identities = 79/247 (31%), Positives = 132/247 (53%), Gaps = 10/247 (4%)
Query: 6 KVILVTGASSGIGAATALHLAKLDAKLAITG-RNVEQLDKVSESCQSVSKNKPLVIQADL 64
V++VTGAS GIG A AL L K K+ + R+ + ++VS+ ++ + + D+
Sbjct: 2 PVVVVTGASRGIGKAIALSLGKAGCKVLVNYARSAKAAEEVSKQIEA-YGGQAITFGGDV 60
Query: 65 TSEEDTKRIIDTVVKHYQKLNVLVNNAGILEAGSIENTSLEQYDKIMNVNVRSIYHLTML 124
+ E D + ++ T + + ++V+VNNAGI + Q+D+++++N+ ++ T
Sbjct: 61 SKEADVEAMMKTAIDAWGTIDVVVNNAGITRDTLLIRMKKSQWDEVIDLNLTGVFLCTQA 120
Query: 125 AVPHLISTK-GNIVNVSSVNGLRSFPGVLAYCVSKAAVDQFTSCTALELASKGVRVNSVN 183
A ++ + G I+N++SV GL G Y +KA V F+ A E AS+ + VN V
Sbjct: 121 ATKIMMKKRKGRIINIASVVGLIGNIGQANYAAAKAGVIGFSKTAAREGASRNINVNVVC 180
Query: 184 PGVTLTNLHKNSGIDQQAYQNFLERSKETHALGRVGNPEEVAKAIAFLA-SDDASFTTGE 242
PG +++ G D + ++ T LGR G PE VA + FLA S AS+ TG+
Sbjct: 181 PGFIASDMTAKLGEDME------KKILGTIPLGRTGQPENVAGLVEFLALSPAASYITGQ 234
Query: 243 HLTVDGG 249
T+DGG
Sbjct: 235 AFTIDGG 241
>3l77_A Short-chain alcohol dehydrogenase; oxidoreductase; HET: NJP PG4;
1.60A {Thermococcus sibiricus}
Length = 235
Score = 181 bits (462), Expect = 4e-57
Identities = 53/230 (23%), Positives = 99/230 (43%), Gaps = 18/230 (7%)
Query: 5 GKVILVTGASSGIGAATALHLAKLDAKLAITGRNVEQLDKVSESCQSVSKNKPLVIQADL 64
KV ++TGAS GIG A A LA+ LA+ R+V++L+K++ + D+
Sbjct: 2 MKVAVITGASRGIGEAIARALARDGYALALGARSVDRLEKIAHELMQEQGVEVFYHHLDV 61
Query: 65 TSEEDTKRIIDTVVKHYQKLNVLVNNAGILEAGSIENTSLEQYDKIMNVNVRSIYHLTML 124
+ E + V++ + ++V+V NAG+ +E S E++ +++ VN+ ++
Sbjct: 62 SKAESVEEFSKKVLERFGDVDVVVANAGLGYFKRLEELSEEEFHEMIEVNLLGVWRTLKA 121
Query: 125 AVPHLISTK-GNIVNVSSVNGLRSFPGVLAYCVSKAAVDQFTSCTALELASKGVRVNSVN 183
+ L T +V S V R P Y +K A ++ + VR +
Sbjct: 122 FLDSLKRTGGLALVTTSDV-SARLIPYGGGYVSTKWAARALV--RTFQIENPDVRFFELR 178
Query: 184 PGVTLTNLHKNSGIDQQAYQNFLERSKETHALGRVGNPEEVAKAIAFLAS 233
PG T + + + +L+ P+E+A+A+ L
Sbjct: 179 PGAVDTYFGGSKP-GKPKEKGYLK-------------PDEIAEAVRCLLK 214
>3tfo_A Putative 3-oxoacyl-(acyl-carrier-protein) reducta; structural
genomics, PSI-biology, NEW YORK structural genomi
research consortium; 2.08A {Sinorhizobium meliloti}
Length = 264
Score = 181 bits (461), Expect = 1e-56
Identities = 57/233 (24%), Positives = 104/233 (44%), Gaps = 15/233 (6%)
Query: 4 TGKVILVTGASSGIGAATALHLAKLDAKLAITGRNVEQLDKVSESCQSVSKNKPLVIQAD 63
KVIL+TGAS GIG A L AK+ + R +++ ++ + + L D
Sbjct: 3 MDKVILITGASGGIGEGIARELGVAGAKILLGARRQARIEAIATEIRD-AGGTALAQVLD 61
Query: 64 LTSEEDTKRIIDTVVKHYQKLNVLVNNAGILEAGSIENTSLEQYDKIMNVNVRSIYHLTM 123
+T V + +++VLVNNAG++ + +++++++++VN++ +
Sbjct: 62 VTDRHSVAAFAQAAVDTWGRIDVLVNNAGVMPLSPLAAVKVDEWERMIDVNIKGVLWGIG 121
Query: 124 LAVPHLISTK-GNIVNVSSVNGLRSFPGVLAYCVSKAAVDQFTSCTALELASKGVRVNSV 182
+P + + + G I+N+ S+ L P YC +K AV + L S +RV V
Sbjct: 122 AVLPIMEAQRSGQIINIGSIGALSVVPTAAVYCATKFAVRAIS--DGLRQESTNIRVTCV 179
Query: 183 NPGVTLTNL--HKNSGIDQQAYQNFLERSKETHALGRVGNPEEVAKAIAFLAS 233
NPGV + L A + AL P ++A+A+ +
Sbjct: 180 NPGVVESELAGTITHEETMAAMDTY-----RAIAL----QPADIARAVRQVIE 223
>3p19_A BFPVVD8, putative blue fluorescent protein; rossmann-fold,
oxidoreductase; HET: NAP; 2.05A {Vibrio vulnificus}
Length = 266
Score = 177 bits (452), Expect = 2e-55
Identities = 64/235 (27%), Positives = 108/235 (45%), Gaps = 16/235 (6%)
Query: 2 NFTGKVILVTGASSGIGAATALHLAKLDAKLAITGRNVEQLDKVSESCQSVSKNKPLVIQ 61
K++++TGASSGIG A A ++ L + R VE+L ++ L Q
Sbjct: 13 GSMKKLVVITGASSGIGEAIARRFSEEGHPLLLLARRVERLKALNLP-------NTLCAQ 65
Query: 62 ADLTSEEDTKRIIDTVVKHYQKLNVLVNNAGILEAGSIENTSLEQYDKIMNVNVRSIYHL 121
D+T + I K Y + +VNNAG++ G I+ ++ ++ +VNV + +
Sbjct: 66 VDVTDKYTFDTAITRAEKIYGPADAIVNNAGMMLLGQIDTQEANEWQRMFDVNVLGLLNG 125
Query: 122 TMLAVPHLISTK-GNIVNVSSVNGLRSFPGVLAYCVSKAAVDQFTSCTALELASKGVRVN 180
+ + + G I+N+SS+ G ++FP AYC +K AV + E+A+ VRV
Sbjct: 126 MQAVLAPMKARNCGTIINISSIAGKKTFPDHAAYCGTKFAVHAISENVREEVAASNVRVM 185
Query: 181 SVNPGVTLTNL--HKNSGIDQQAYQNFLERSKETHALGRVGNPEEVAKAIAFLAS 233
++ P T L H S + Y + R L ++VA+A+ F
Sbjct: 186 TIAPSAVKTELLSHTTSQQIKDGYDAW--RVDMGGVL----AADDVARAVLFAYQ 234
>3tpc_A Short chain alcohol dehydrogenase-related dehydro; structural
genomics, PSI-biology, NEW YORK structural genomi
research consortium; 2.34A {Sinorhizobium meliloti}
Length = 257
Score = 176 bits (448), Expect = 8e-55
Identities = 70/267 (26%), Positives = 113/267 (42%), Gaps = 23/267 (8%)
Query: 1 MNFTGKVILVTGASSGIGAATALHLAKLDAKLAITGRNVEQLDKVSESCQSVSKNKPLVI 60
M +V +VTGASSG+GAA LA+ A + ++ + +
Sbjct: 3 MQLKSRVFIVTGASSGLGAAVTRMLAQEGATVLGLDLKPPAGEEPAAELGA----AVRFR 58
Query: 61 QADLTSEEDTKRIIDTVVKHYQKLNVLVNNAGILEAGSI----ENTSLEQYDKIMNVNVR 116
AD+T+E D + + + ++ LVN AG I +L+ + + + VN+
Sbjct: 59 NADVTNEADATAALAFAKQEFGHVHGLVNCAGTAPGEKILGRSGPHALDSFARTVAVNLI 118
Query: 117 SIYHLTMLAVPHLISTK-------GNIVNVSSVNGLRSFPGVLAYCVSKAAVDQFTSCTA 169
+++ LA + + G IVN +S+ G AY SK V T A
Sbjct: 119 GTFNMIRLAAEVMSQGEPDADGERGVIVNTASIAAFDGQIGQAAYAASKGGVAALTLPAA 178
Query: 170 LELASKGVRVNSVNPGVTLTNLHKNSGIDQQAYQNFLERSKETHALGRVGNPEEVAKAIA 229
ELA G+RV ++ PG+ T + +G+ Q Q+ L S R+G EE A +
Sbjct: 179 RELARFGIRVVTIAPGIFDTPMM--AGMPQDV-QDALAASVPF--PPRLGRAEEYAALVK 233
Query: 230 FLASDDASFTTGEHLTVDGGRHAMCPR 256
+ + GE + +DG M PR
Sbjct: 234 HICENT--MLNGEVIRLDGALR-MAPR 257
>1xg5_A ARPG836; short chain dehydrogenase, human, SGC, structural
genomics, structural genomics consortium,
oxidoreductase; HET: NAP; 1.53A {Homo sapiens} SCOP:
c.2.1.2
Length = 279
Score = 175 bits (447), Expect = 2e-54
Identities = 61/242 (25%), Positives = 113/242 (46%), Gaps = 18/242 (7%)
Query: 2 NFTGKVILVTGASSGIGAATALHLAKLDAKLAITGRNVEQLDKVSESCQSVSKN-KPLVI 60
+ ++ LVTGAS GIGAA A L + K+ R V +++++ C+S +
Sbjct: 29 RWRDRLALVTGASGGIGAAVARALVQQGLKVVGCARTVGNIEELAAECKSAGYPGTLIPY 88
Query: 61 QADLTSEEDTKRIIDTVVKHYQKLNVLVNNAGILEAGSIENTSLEQYDKIMNVNVRSIYH 120
+ DL++EED + + + +++ +NNAG+ ++ + S + + NVNV ++
Sbjct: 89 RCDLSNEEDILSMFSAIRSQHSGVDICINNAGLARPDTLLSGSTSGWKDMFNVNVLALSI 148
Query: 121 LTMLAVPHLISTK---GNIVNVSSVNGLRSFP--GVLAYCVSKAAVDQFTSCTALELASK 175
T A + G+I+N++S++G R P Y +K AV T EL
Sbjct: 149 CTREAYQSMKERNVDDGHIININSMSGHRVLPLSVTHFYSATKYAVTALTEGLRQELREA 208
Query: 176 G--VRVNSVNPGVTLTNL--HKNSGIDQQAYQNFLERSKETHALGRVGNPEEVAKAIAFL 231
+R ++PGV T + ++A + ++ L PE+VA+A+ ++
Sbjct: 209 QTHIRATCISPGVVETQFAFKLHDKDPEKAAATY----EQMKCL----KPEDVAEAVIYV 260
Query: 232 AS 233
S
Sbjct: 261 LS 262
>2nwq_A Probable short-chain dehydrogenase; oxidoreductase; 2.30A
{Pseudomonas aeruginosa}
Length = 272
Score = 175 bits (445), Expect = 3e-54
Identities = 61/237 (25%), Positives = 115/237 (48%), Gaps = 15/237 (6%)
Query: 2 NFTGKVILVTGASSGIGAATALHLAKLDAKLAITGRNVEQLDKVSESCQSVSKNKPLVIQ 61
+ + +TGA+SG G A A A+ L +TGR E+L ++ +K + L +
Sbjct: 18 SHMSSTLFITGATSGFGEACARRFAEAGWSLVLTGRREERLQALAGELS--AKTRVLPLT 75
Query: 62 ADLTSEEDTKRIIDTVVKHYQKLNVLVNNAGI-LEAGSIENTSLEQYDKIMNVNVRSIYH 120
D+ +D + + + L L+NNAG+ L ++ L+ +D +++ N++ + +
Sbjct: 76 LDVRDRAAMSAAVDNLPEEFATLRGLINNAGLALGTDPAQSCDLDDWDTMVDTNIKGLLY 135
Query: 121 LTMLAVPHLISTK--GNIVNVSSVNGLRSFPGVLAYCVSKAAVDQFTSCTALELASKGVR 178
T L +P LI+ +IVN+ SV G +PG Y +KA V+QF+ +L GVR
Sbjct: 136 STRLLLPRLIAHGAGASIVNLGSVAGKWPYPGSHVYGGTKAFVEQFSLNLRCDLQGTGVR 195
Query: 179 VNSVNPGVTLTNL--HKNSGIDQQAYQNFLERSKETHALGRVGNPEEVAKAIAFLAS 233
V ++ PG+ + + G + + + H + PE++A+ I ++ +
Sbjct: 196 VTNLEPGLCESEFSLVRFGGDQARYDKTY----AGAHPI----QPEDIAETIFWIMN 244
>3rku_A Oxidoreductase YMR226C; substrate fingerprint, short chain
oxidoreductase, rossmann oxidoreductase; HET: NAP; 2.60A
{Saccharomyces cerevisiae}
Length = 287
Score = 173 bits (441), Expect = 2e-53
Identities = 72/240 (30%), Positives = 121/240 (50%), Gaps = 16/240 (6%)
Query: 2 NFTGKVILVTGASSGIGAATALHLAKL---DAKLAITGRNVEQLDKVSESCQSVSKN-KP 57
K +L+TGAS+GIG ATAL + D KL + R +E+L+++ ++ N K
Sbjct: 30 RLAKKTVLITGASAGIGKATALEYLEASNGDMKLILAARRLEKLEELKKTIDQEFPNAKV 89
Query: 58 LVIQADLTSEEDTKRIIDTVVKHYQKLNVLVNNAGI-LEAGSIENTSLEQYDKIMNVNVR 116
V Q D+T E K I+ + + ++ +++LVNNAG L + + + E + + NV
Sbjct: 90 HVAQLDITQAEKIKPFIENLPQEFKDIDILVNNAGKALGSDRVGQIATEDIQDVFDTNVT 149
Query: 117 SIYHLTMLAVPHLISTK-GNIVNVSSVNGLRSFPGVLAYCVSKAAVDQFTSCTALELASK 175
++ ++T +P + G+IVN+ S+ G ++P YC SK AV FT EL +
Sbjct: 150 ALINITQAVLPIFQAKNSGDIVNLGSIAGRDAYPTGSIYCASKFAVGAFTDSLRKELINT 209
Query: 176 GVRVNSVNPGVTLTNL--HKNSGIDQQAYQNFLERSKETHALGRVGNPEEVAKAIAFLAS 233
+RV + PG+ T + G ++QA + K+T L ++VA I + S
Sbjct: 210 KIRVILIAPGLVETEFSLVRYRGNEEQAKNVY----KDTTPL----MADDVADLIVYATS 261
>2o23_A HADH2 protein; HSD17B10, schad, ERAB, type II HADH,
2-methyl-3-hydroxybuTyr dehydrogenase, MHBD, structural
genomics, structural genomi consortium; HET: NAD GOL;
1.20A {Homo sapiens} SCOP: c.2.1.2 PDB: 1so8_A 1u7t_A*
1e3s_A* 1e3w_B* 1e3w_A* 1e6w_A*
Length = 265
Score = 172 bits (439), Expect = 2e-53
Identities = 65/262 (24%), Positives = 115/262 (43%), Gaps = 24/262 (9%)
Query: 1 MNFTGKVILVTGASSGIGAATALHLAKLDAKLAITGRNVEQLDKVSESCQSVSKNKPLVI 60
+ G V ++TG +SG+G ATA L A + + ++ + +
Sbjct: 8 RSVKGLVAVITGGASGLGLATAERLVGQGASAVLLDLPNSGGEAQAKKLGN----NCVFA 63
Query: 61 QADLTSEEDTKRIIDTVVKHYQKLNVLVNNAGILEAGSIENT------SLEQYDKIMNVN 114
AD+TSE+D + + + +++V VN AGI A N +LE + ++++VN
Sbjct: 64 PADVTSEKDVQTALALAKGKFGRVDVAVNCAGIAVASKTYNLKKGQTHTLEDFQRVLDVN 123
Query: 115 VRSIYHLTMLAVPHLIST-------KGNIVNVSSVNGLRSFPGVLAYCVSKAAVDQFTSC 167
+ +++ L + +G I+N +SV G AY SK + T
Sbjct: 124 LMGTFNVIRLVAGEMGQNEPDQGGQRGVIINTASVAAFEGQVGQAAYSASKGGIVGMTLP 183
Query: 168 TALELASKGVRVNSVNPGVTLTNLHKNSGIDQQAYQNFLERSKETHALGRVGNPEEVAKA 227
A +LA G+RV ++ PG+ T L + + ++ NFL R+G+P E A
Sbjct: 184 IARDLAPIGIRVMTIAPGLFGTPLL--TSLPEKV-CNFLASQVPF--PSRLGDPAEYAHL 238
Query: 228 IAFLASDDASFTTGEHLTVDGG 249
+ + + F GE + +DG
Sbjct: 239 VQAII--ENPFLNGEVIRLDGA 258
>3asu_A Short-chain dehydrogenase/reductase SDR; SDR family, rossmann-fold,
short-chain dehydrogenase/reducta ALLO-threonine
dehydrogenase; 1.90A {Escherichia coli} PDB: 3asv_A*
Length = 248
Score = 170 bits (433), Expect = 1e-52
Identities = 56/232 (24%), Positives = 115/232 (49%), Gaps = 17/232 (7%)
Query: 7 VILVTGASSGIGAATALHLAKLDAKLAITGRNVEQLDKVSESCQSVSKNKPLVIQADLTS 66
++LVTGA++G G + K+ TGR E+L ++ + + Q D+ +
Sbjct: 2 IVLVTGATAGFGECITRRFIQQGHKVIATGRRQERLQELKDELGD----NLYIAQLDVRN 57
Query: 67 EEDTKRIIDTVVKHYQKLNVLVNNAGI-LEAGSIENTSLEQYDKIMNVNVRSIYHLTMLA 125
+ ++ ++ + +++LVNNAG+ L S+E ++ +++ N + + ++T
Sbjct: 58 RAAIEEMLASLPAEWCNIDILVNNAGLALGMEPAHKASVEDWETMIDTNNKGLVYMTRAV 117
Query: 126 VPHLISTK-GNIVNVSSVNGLRSFPGVLAYCVSKAAVDQFTSCTALELASKGVRVNSVNP 184
+P ++ G+I+N+ S G + G Y +KA V QF+ +L VRV + P
Sbjct: 118 LPGMVERNHGHIINIGSTAGSWPYAGGNVYGATKAFVRQFSLNLRTDLHGTAVRVTDIEP 177
Query: 185 GV---TLTNLHKNSGIDQQAYQNFLERSKETHALGRVGNPEEVAKAIAFLAS 233
G+ T + + G D +A + + + T AL PE+V++A+ ++++
Sbjct: 178 GLVGGTEFSNVRFKGDDGKAEKTY----QNTVAL----TPEDVSEAVWWVST 221
>2yut_A Putative short-chain oxidoreductase; alpha and beta proteins (A/B),
NAD(P)-binding rossmann-fold structural genomics,
NPPSFA; HET: NAP; 2.20A {Thermus thermophilus}
Length = 207
Score = 167 bits (425), Expect = 4e-52
Identities = 43/224 (19%), Positives = 81/224 (36%), Gaps = 33/224 (14%)
Query: 8 ILVTGASSGIGAATALHLAKLDAKLAITGRNVEQLDKVSESCQSVSKNKPLVIQADLTSE 67
+L+TGA+ G+G A A L L ++GR L +++ + + ADL E
Sbjct: 3 VLITGATGGLGGAFARALK--GHDLLLSGRRAGALAELAREVGA------RALPADLADE 54
Query: 68 EDTKRIIDTVVKHYQKLNVLVNNAGILEAGSIENTSLEQYDKIMNVNVRSIYHLTMLAVP 127
+ +++ L++LV+ G S+ + ++++ ++ + +
Sbjct: 55 LE----AKALLEEAGPLDLLVHAVGKAGRASVREAGRDLVEEMLAAHLLT----AAFVLK 106
Query: 128 HLISTK-GNIVNVSSVNGLRSFPGVLAYCVSKAAVDQFTSCTALELASKGVRVNSVNPGV 186
H K V + PG AY +K A++ + EL +GV + V
Sbjct: 107 HARFQKGARAVFFGAYPRYVQVPGFAAYAAAKGALEAYLEAARKELLREGVHLVLVRLPA 166
Query: 187 TLTNLHKNSGIDQQAYQNFLERSKETHALGRVGNPEEVAKAIAF 230
T L G +PEE A+ +
Sbjct: 167 VATGLWAPLGGPP----------------KGALSPEEAARKVLE 194
>3u0b_A Oxidoreductase, short chain dehydrogenase/reducta protein;
structural genomics, ssgcid; 1.70A {Mycobacterium
smegmatis} PDB: 3lls_A 3q6i_A* 3m1l_A
Length = 454
Score = 172 bits (439), Expect = 2e-51
Identities = 68/256 (26%), Positives = 113/256 (44%), Gaps = 26/256 (10%)
Query: 3 FTGKVILVTGASSGIGAATALHLAKLDAKLAITGRNVEQLDKVSESCQSVSKNKPLVIQA 62
GKV +VTGA+ GIGA A A+ A + + D K +
Sbjct: 211 LDGKVAVVTGAARGIGATIAEVFARDGATVVAIDVDGAAEDLKRV----ADKVGGTALTL 266
Query: 63 DLTSEEDTKRIIDTVVKHY-QKLNVLVNNAGILEAGSIENTSLEQYDKIMNVNVRSIYHL 121
D+T+++ +I V +H+ K+++LVNNAGI + N +++D ++ VN+ + L
Sbjct: 267 DVTADDAVDKITAHVTEHHGGKVDILVNNAGITRDKLLANMDEKRWDAVIAVNLLAPQRL 326
Query: 122 TMLAVPH-LISTKGNIVNVSSVNGLRSFPGVLAYCVSKAAVDQFTSCTALELASKGVRVN 180
T V + I G ++ +SS+ G+ G Y +KA + A LA KG+ +N
Sbjct: 327 TEGLVGNGTIGEGGRVIGLSSMAGIAGNRGQTNYATTKAGMIGLAEALAPVLADKGITIN 386
Query: 181 SVNPG-------VTLTNLHKNSGIDQQAYQNFLERSKETHALGRVGNPEEVAKAIAFLAS 233
+V PG + + G +L + G P +VA+ IA+ AS
Sbjct: 387 AVAPGFIETKMTEAIPLATREVGRRLN-------------SLFQGGQPVDVAELIAYFAS 433
Query: 234 DDASFTTGEHLTVDGG 249
++ TG + V G
Sbjct: 434 PASNAVTGNTIRVCGQ 449
>3m1a_A Putative dehydrogenase; short, PSI, MCSG, structural genomics,
midwest center for structural genomics, protein
structure initiative; 2.00A {Streptomyces avermitilis}
Length = 281
Score = 168 bits (427), Expect = 2e-51
Identities = 72/243 (29%), Positives = 111/243 (45%), Gaps = 12/243 (4%)
Query: 1 MNFTGKVILVTGASSGIGAATALHLAKLDAKLAITGRNVEQLDKVSESCQSVSKNKPLVI 60
M+ + KV LVTGASSG G A A + T R E LD + + ++ I
Sbjct: 1 MSESAKVWLVTGASSGFGRAIAEAAVAAGDTVIGTARRTEALDDLVAA----YPDRAEAI 56
Query: 61 QADLTSEEDTKRIIDTVVKHYQKLNVLVNNAGILEAGSIENTSLEQYDKIMNVNVRSIYH 120
D+T E + V+ Y +++VLVNNAG + G+ E T+ + + ++V
Sbjct: 57 SLDVTDGERIDVVAADVLARYGRVDVLVNNAGRTQVGAFEETTERELRDLFELHVFGPAR 116
Query: 121 LTMLAVPHLISTK-GNIVNVSSVNGLRSFPGVLAYCVSKAAVDQFTSCTALELASKGVRV 179
LT +P + G++VN+SS G SF G AY +KAA++Q + A E+A G++V
Sbjct: 117 LTRALLPQMRERGSGSVVNISSFGGQLSFAGFSAYSATKAALEQLSEGLADEVAPFGIKV 176
Query: 180 NSVNPGVTLTNLHKNSGIDQQ----AYQNFLERSKETHALGR---VGNPEEVAKAIAFLA 232
V PG TNL AY + +++ G+P + A AI
Sbjct: 177 LIVEPGAFRTNLFGKGAAYFSEENPAYAEKVGPTRQLVQGSDGSQPGDPAKAAAAIRLAL 236
Query: 233 SDD 235
+
Sbjct: 237 DTE 239
>3u9l_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics,
PSI-biology, NEW YORK structural genomi research
consortium, nysgrc; 2.10A {Sinorhizobium meliloti}
Length = 324
Score = 166 bits (422), Expect = 3e-50
Identities = 60/256 (23%), Positives = 113/256 (44%), Gaps = 20/256 (7%)
Query: 1 MNFTGKVILVTGASSGIGAATALHLAKLDAKLAITGRNVEQLDK-VSESCQSVSKNKP-- 57
M + K+IL+TGASSG G TA LA ++ + R++ + E+ +++
Sbjct: 1 MVMSKKIILITGASSGFGRLTAEALAGAGHRVYASMRDIVGRNASNVEAIAGFARDNDVD 60
Query: 58 -LVIQADLTSEEDTKRIIDTVVKHYQKLNVLVNNAGILEAGSIENTSLEQYDKIMNVNVR 116
++ D+ S+ R ID ++ +++VL++NAG + G E + EQ+ ++ ++NV
Sbjct: 61 LRTLELDVQSQVSVDRAIDQIIGEDGRIDVLIHNAGHMVFGPAEAFTPEQFAELYDINVL 120
Query: 117 SIYHLTMLAVPHLISTK-GNIVNVSSVNGLRSF-PGVLAYCVSKAAVDQFTSCTALELAS 174
S + A+PH+ K G ++ +SS + P + Y +KAA+D A EL+
Sbjct: 121 STQRVNRAALPHMRRQKHGLLIWISSSSSAGGTPPYLAPYFAAKAAMDAIAVQYARELSR 180
Query: 175 KGVRVNSVNPGVTLTNLHKNSGI------------DQQAYQNFLERSKETHALG--RVGN 220
G+ + + PG + + + + E K+ A +
Sbjct: 181 WGIETSIIVPGAFTSGTNHFAHSGVPDDHARQAEYEAGPNAGLGEEIKKAFAAIVPPDAD 240
Query: 221 PEEVAKAIAFLASDDA 236
VA AI + +
Sbjct: 241 VSLVADAIVRVVGTAS 256
>3d7l_A LIN1944 protein; APC89317, structural genomics, PS protein
structure initiative, midwest center for structural
genomics, MCSG; 2.06A {Listeria innocua}
Length = 202
Score = 161 bits (410), Expect = 8e-50
Identities = 45/243 (18%), Positives = 88/243 (36%), Gaps = 43/243 (17%)
Query: 4 TGKVILVTGASSGIGAATALHLAKLDAKLAITGRNVEQLDKVSESCQSVSKNKPLVIQAD 63
IL+ GAS +G+A L K A++ GR+ + D
Sbjct: 2 NAMKILLIGASGTLGSAVKERLEK-KAEVITAGRHSGD------------------VTVD 42
Query: 64 LTSEEDTKRIIDTVVKHYQKLNVLVNNAGILEAGSIENTSLEQYDKIMNVNVRSIYHLTM 123
+T+ + I + + K++ +V+ G + + E+ ++ + +L +
Sbjct: 43 ITNIDS----IKKMYEQVGKVDAIVSATGSATFSPLTELTPEKNAVTISSKLGGQINLVL 98
Query: 124 LAVPHLISTKGNIVNVSSVNGLRSFPGVLAYCVSKAAVDQFTSCTALELASKGVRVNSVN 183
L + L + KG+ + + + ++ AV F A+E+ +G+R+N+V+
Sbjct: 99 LGIDSL-NDKGSFTLTTGIMMEDPIVQGASAAMANGAVTAFAKSAAIEMP-RGIRINTVS 156
Query: 184 PGVTLTNLHKNSGIDQQAYQNFLERSKETHALGRVGNPEEVAKAIAFLASDDASFTTGEH 243
P V + + F E A +VA+A TGE
Sbjct: 157 PNVLEESW--------DKLEPFFEGFLPVPA-------AKVARAFEKSVF---GAQTGES 198
Query: 244 LTV 246
V
Sbjct: 199 YQV 201
>3tl3_A Short-chain type dehydrogenase/reductase; ssgcid, seattle
structural genomics center for infectious DI
oxidoreductase; 1.85A {Mycobacterium ulcerans}
Length = 257
Score = 162 bits (413), Expect = 1e-49
Identities = 69/271 (25%), Positives = 114/271 (42%), Gaps = 33/271 (12%)
Query: 1 MNFTGKVILVTGASSGIGAATALHLAKLDAKLAITGRNVEQL-DKVSESCQSVSKNKPLV 59
M V +VTG +SG+G AT L A++ + E + + + +
Sbjct: 5 MEIRDAVAVVTGGASGLGLATTKRLLDAGAQVVVLDIRGEDVVADLGDRARFA------- 57
Query: 60 IQADLTSEEDTKRIIDTVVKHYQKLNVLVNNAGILEAGSIENT----SLEQYDKIMNVNV 115
AD+T E +D L ++VN AG A + + SL + KI+++N+
Sbjct: 58 -AADVTDEAAVASALDLAETM-GTLRIVVNCAGTGNAIRVLSRDGVFSLAAFRKIVDINL 115
Query: 116 RSIYHLTMLAVPHLIST---------KGNIVNVSSVNGLRSFPGVLAYCVSKAAVDQFTS 166
+++ LA + T +G I+N +SV G AY SK V T
Sbjct: 116 VGSFNVLRLAAERIAKTEPVGPNAEERGVIINTASVAAFDGQIGQAAYSASKGGVVGMTL 175
Query: 167 CTALELASKGVRVNSVNPGVTLTNLHKNSGIDQQAYQNFLERSKETHALGRVGNPEEVAK 226
A +LAS +RV ++ PG+ T L + + ++A + L + R+GNP+E
Sbjct: 176 PIARDLASHRIRVMTIAPGLFDTPLL--ASLPEEA-RASLGKQVPH--PSRLGNPDEYGA 230
Query: 227 AIAFLASDDASFTTGEHLTVDGG-RHAMCPR 256
+ + GE + +DG R M PR
Sbjct: 231 LAVHIIENP--MLNGEVIRLDGAIR--MAPR 257
>1jtv_A 17 beta-hydroxysteroid dehydrogenase type 1; steroid hormones,
alternative binding mode, oxidoreductase; HET: TES;
1.54A {Homo sapiens} SCOP: c.2.1.2 PDB: 1dht_A* 1equ_A*
1bhs_A* 1i5r_A* 1qyv_A* 1qyw_A* 1qyx_A* 3dey_X* 3dhe_A*
3hb4_X* 3hb5_X* 3klp_X* 3km0_A* 1iol_A* 1fds_A* 1fdt_A*
3klm_X* 1fdw_A* 1fdu_A* 1fdv_A* ...
Length = 327
Score = 159 bits (404), Expect = 1e-47
Identities = 56/247 (22%), Positives = 103/247 (41%), Gaps = 19/247 (7%)
Query: 6 KVILVTGASSGIGAATALHLAKLDAK---LAITGRNVEQLDKVSESCQSVSKNKP--LVI 60
V+L+TG SSGIG A+ LA ++ + T R+++ ++ E+ ++++ +
Sbjct: 3 TVVLITGCSSGIGLHLAVRLASDPSQSFKVYATLRDLKTQGRLWEAARALACPPGSLETL 62
Query: 61 QADLTSEEDTKRIIDTVVKHYQKLNVLVNNAGILEAGSIENTSLEQYDKIMNVNVRSIYH 120
Q D+ + + V + +++VLV NAG+ G +E + +++VNV
Sbjct: 63 QLDVRDSKSVAAARERVTE--GRVDVLVCNAGLGLLGPLEALGEDAVASVLDVNVVGTVR 120
Query: 121 LTMLAVPHLISTK-GNIVNVSSVNGLRSFPGVLAYCVSKAAVDQFTSCTALELASKGVRV 179
+ +P + G ++ SV GL P YC SK A++ A+ L GV +
Sbjct: 121 MLQAFLPDMKRRGSGRVLVTGSVGGLMGLPFNDVYCASKFALEGLCESLAVLLLPFGVHL 180
Query: 180 NSVNPGVTLTNLHKNSGI---------DQQAYQNFLERSKETHALGR--VGNPEEVAKAI 228
+ + G T + D + F + + + R NPEEVA+
Sbjct: 181 SLIECGPVHTAFMEKVLGSPEEVLDRTDIHTFHRFYQYLAHSKQVFREAAQNPEEVAEVF 240
Query: 229 AFLASDD 235
Sbjct: 241 LTALRAP 247
>1uay_A Type II 3-hydroxyacyl-COA dehydrogenase; beta oxidation, fatty
acid, structural genomi structural genomics/proteomics
initiative, RSGI; HET: ADN; 1.40A {Thermus thermophilus}
SCOP: c.2.1.2
Length = 242
Score = 156 bits (397), Expect = 2e-47
Identities = 70/262 (26%), Positives = 109/262 (41%), Gaps = 33/262 (12%)
Query: 6 KVILVTGASSGIGAATALHLAKLDAKLAITGRNVEQLDKVSESCQSVSKNKPLVIQADLT 65
+ LVTG +SG+G A AL L ++ + E D + ++ D+T
Sbjct: 3 RSALVTGGASGLGRAAALALKARGYRVVVLDLRREGEDLI-------------YVEGDVT 49
Query: 66 SEEDTKRIIDTVVKHYQKLNVLVNNAGILEAGSI----ENTSLEQYDKIMNVNVRSIYHL 121
EED +R + + L +V+ AG+ A I LE + +++ VN+ +++
Sbjct: 50 REEDVRRAVARAQEEAP-LFAVVSAAGVGLAEKILGKEGPHGLESFRRVLEVNLLGTFNV 108
Query: 122 TMLAVPHLIST-------KGNIVNVSSVNGLRSFPGVLAYCVSKAAVDQFTSCTALELAS 174
LA + +G IVN +SV G AY SK V T A ELA
Sbjct: 109 LRLAAWAMRENPPDAEGQRGVIVNTASVAAFEGQIGQAAYAASKGGVVALTLPAARELAG 168
Query: 175 KGVRVNSVNPGVTLTNLHKNSGIDQQAYQNFLERSKETHALGRVGNPEEVAKAIAFLASD 234
G+RV +V PG+ T L + + + L R+G PEE A + + +
Sbjct: 169 WGIRVVTVAPGLFDTPLLQGLP---EKAKASLAAQVPFP--PRLGRPEEYAALVLHILEN 223
Query: 235 DASFTTGEHLTVDGGRHAMCPR 256
GE + +DG M PR
Sbjct: 224 P--MLNGEVVRLDGAL-RMAPR 242
>3qlj_A Short chain dehydrogenase; structural genomics, seattle structural
genomics center for infectious disease, ssgcid,
tuberculosis; 1.80A {Mycobacterium avium}
Length = 322
Score = 158 bits (401), Expect = 3e-47
Identities = 68/264 (25%), Positives = 112/264 (42%), Gaps = 26/264 (9%)
Query: 3 FTGKVILVTGASSGIGAATALHLAKLDAKL-------AITGRNVEQLDKVSESCQSVSKN 55
G+V++VTGA GIG A AL A A++ + G ++
Sbjct: 25 VDGRVVIVTGAGGGIGRAHALAFAAEGARVVVNDIGVGLDGSPASGGSAAQSVVDEITAA 84
Query: 56 --KPLVIQADLTSEEDTKRIIDTVVKHYQKLNVLVNNAGILEAGSIENTSLEQYDKIMNV 113
+ + +++ + +I T V+ + L+VLVNNAGI+ I NTS E++D ++ V
Sbjct: 85 GGEAVADGSNVADWDQAAGLIQTAVETFGGLDVLVNNAGIVRDRMIANTSEEEFDAVIAV 144
Query: 114 NVRSIYHLTMLAVPHLISTK-------GNIVNVSSVNGLRSFPGVLAYCVSKAAVDQFTS 166
+++ + A + G I+N SS GL+ G Y +KA + T
Sbjct: 145 HLKGHFATMRHAAAYWRGLSKAGKAVDGRIINTSSGAGLQGSVGQGNYSAAKAGIATLTL 204
Query: 167 CTALELASKGVRVNSVNPGVTLTNLHKNSGIDQQAYQNFLERSKETHALGRVGNPEEVAK 226
A E+ GV VN++ P T + + F E PE V+
Sbjct: 205 VGAAEMGRYGVTVNAIAPSAR-TRMTETV---------FAEMMATQDQDFDAMAPENVSP 254
Query: 227 AIAFLASDDASFTTGEHLTVDGGR 250
+ +L S +A TG+ V+GG+
Sbjct: 255 LVVWLGSAEARDVTGKVFEVEGGK 278
>1gz6_A Estradiol 17 beta-dehydrogenase 4; 17BETA-HSD4, MFE-2,
beta-oxidation, peroxisome, SDR, steroid biosynthesis,
oxidoreductase, NADP; HET: NAI; 2.38A {Rattus
norvegicus} SCOP: c.2.1.2 PDB: 1zbq_A*
Length = 319
Score = 150 bits (381), Expect = 3e-44
Identities = 61/262 (23%), Positives = 110/262 (41%), Gaps = 35/262 (13%)
Query: 1 MNFTGKVILVTGASSGIGAATALHLAKLDAKLAI--TGRNVEQLDKVSESCQSVSKNKPL 58
+ F G+V+LVTGA G+G A AL A+ A + + G + + + K S + V +
Sbjct: 5 LRFDGRVVLVTGAGGGLGRAYALAFAERGALVVVNDLGGDFKGVGKGSSAADKVVEE--- 61
Query: 59 VIQ-------ADLTSEEDTKRIIDTVVKHYQKLNVLVNNAGILEAGSIENTSLEQYDKIM 111
I+ A+ S E ++++ T + + +++V+VNNAGIL S S E +D I
Sbjct: 62 -IRRRGGKAVANYDSVEAGEKLVKTALDTFGRIDVVVNNAGILRDRSFSRISDEDWDIIQ 120
Query: 112 NVNVRSIYHLTMLAVPHLISTK-GNIVNVSSVNGLRSFPGVLAYCVSKAAVDQFTSCTAL 170
V++R + +T A H+ G I+ +S +G+ G Y +K + + +
Sbjct: 121 RVHLRGSFQVTRAAWDHMKKQNYGRIIMTASASGIYGNFGQANYSAAKLGLLGLANTLVI 180
Query: 171 ELASKGVRVNSVNPGVT--LTNLHKNSGIDQQAYQNFLERSKETHALGRVGNPEEVAKAI 228
E + N++ P +T + + + + PE VA +
Sbjct: 181 EGRKNNIHCNTIAPNAGSRMT----ETVMPEDLVEAL--------------KPEYVAPLV 222
Query: 229 AFLASDDASFTTGEHLTVDGGR 250
+L + G V G
Sbjct: 223 LWLCHESCEE-NGGLFEVGAGW 243
>2et6_A (3R)-hydroxyacyl-COA dehydrogenase; MFE-2, beta-oxidation,
peroxisome, SDR, oxido; 2.22A {Candida tropicalis}
Length = 604
Score = 151 bits (384), Expect = 2e-42
Identities = 72/262 (27%), Positives = 122/262 (46%), Gaps = 31/262 (11%)
Query: 1 MNFTGKVILVTGASSGIGAATALHLAKLDAKLAI--TGRNVEQLDKVSESCQSVSKNKPL 58
++F KV+++TGA G+G +L AKL AK+ + G + S++ V
Sbjct: 4 VDFKDKVVIITGAGGGLGKYYSLEFAKLGAKVVVNDLGGALNGQGGNSKAADVVVDE--- 60
Query: 59 VIQ-------ADLTSEEDTKRIIDTVVKHYQKLNVLVNNAGILEAGSIENTSLEQYDKIM 111
I AD + D +I++T VK++ ++V++NNAGIL S++ + + Y ++
Sbjct: 61 -IVKNGGVAVADYNNVLDGDKIVETAVKNFGTVHVIINNAGILRDASMKKMTEKDYKLVI 119
Query: 112 NVNVRSIYHLTMLAVPHLISTK-GNIVNVSSVNGLRSFPGVLAYCVSKAAVDQFTSCTAL 170
+V++ + +T A P+ K G IVN SS GL G Y +K+A+ F A
Sbjct: 120 DVHLNGAFAVTKAAWPYFQKQKYGRIVNTSSPAGLYGNFGQANYASAKSALLGFAETLAK 179
Query: 171 ELASKGVRVNSVNPGVTLTNLHKNSGIDQQAYQNFLERSKETHALGRVGNPEEVAKAIAF 230
E A ++ N++ P A E L ++G PE+VA + +
Sbjct: 180 EGAKYNIKANAIAPL---------------ARSRMTESIMPPPMLEKLG-PEKVAPLVLY 223
Query: 231 LASDDASFTTGEHLTVDGGRHA 252
L+S + TG+ V G +A
Sbjct: 224 LSSAENEL-TGQFFEVAAGFYA 244
Score = 135 bits (341), Expect = 1e-36
Identities = 66/253 (26%), Positives = 119/253 (47%), Gaps = 27/253 (10%)
Query: 1 MNFTGKVILVTGASSGIGAATALHLAKLDAKLAITGRNVEQLDKVSESCQSVSKN--KPL 58
++ KV+L+TGA +G+G A AK AK+ V +++ + +
Sbjct: 318 VSLKDKVVLITGAGAGLGKEYAKWFAKYGAKVV-----VNDFKDATKTVDEIKAAGGEAW 372
Query: 59 VIQADLTSEEDTKRIIDTVVKHYQKLNVLVNNAGILEAGSIENTSLEQYDKIMNVNVRSI 118
Q D+ +D++ II V+ Y +++LVNNAGIL S S +++D + V++
Sbjct: 373 PDQHDVA--KDSEAIIKNVIDKYGTIDILVNNAGILRDRSFAKMSKQEWDSVQQVHLIGT 430
Query: 119 YHLTMLAVPHLISTK-GNIVNVSSVNGLRSFPGVLAYCVSKAAVDQFTSCTALELASKGV 177
++L+ LA P+ + + G I+N++S +G+ G Y SKA + + A+E A +
Sbjct: 431 FNLSRLAWPYFVEKQFGRIINITSTSGIYGNFGQANYSSSKAGILGLSKTMAIEGAKNNI 490
Query: 178 RVNSVNPGVTLTNLHKNSGIDQQAYQNFLERSKETHALGRVGNPEEVAKAIAFLASDDAS 237
+VN V P T + + +Q + + ++VA + +L +DD
Sbjct: 491 KVNIVAP-HAETAMTLSIMREQ---------------DKNLYHADQVAPLLVYLGTDDVP 534
Query: 238 FTTGEHLTVDGGR 250
TGE + GG
Sbjct: 535 V-TGETFEIGGGW 546
>3oml_A GH14720P, peroxisomal multifunctional enzyme type 2, CG3415;
rossmann fold, hot-DOG fold, hydratase 2 motif,
peroxisomes, oxidoreductase; 2.15A {Drosophila
melanogaster}
Length = 613
Score = 139 bits (352), Expect = 5e-38
Identities = 58/262 (22%), Positives = 111/262 (42%), Gaps = 31/262 (11%)
Query: 1 MNFTGKVILVTGASSGIGAATALHLAKLDAKLAI--TGRNVEQLDKVSESCQSVSKNKPL 58
+ + G+V +VTGA +G+G AL A+ AK+ + G + V
Sbjct: 15 LRYDGRVAVVTGAGAGLGREYALLFAERGAKVVVNDLGGTHSGDGASQRAADIVVDE--- 71
Query: 59 VIQ-------ADLTSEEDTKRIIDTVVKHYQKLNVLVNNAGILEAGSIENTSLEQYDKIM 111
I+ AD S D ++I+T +K + ++++LVNNAGIL S+ TS + ++ +
Sbjct: 72 -IRKAGGEAVADYNSVIDGAKVIETAIKAFGRVDILVNNAGILRDRSLVKTSEQDWNLVN 130
Query: 112 NVNVRSIYHLTMLAVPHLIS-TKGNIVNVSSVNGLRSFPGVLAYCVSKAAVDQFTSCTAL 170
+V+++ + T A P++ G I+ SS +G+ G + Y +K + + A+
Sbjct: 131 DVHLKGSFKCTQAAFPYMKKQNYGRIIMTSSNSGIYGNFGQVNYTAAKMGLIGLANTVAI 190
Query: 171 ELASKGVRVNSVNPGVTLTNLHKNSGIDQQAYQNFLERSKETHALGRVGNPEEVAKAIAF 230
E A V N + P + + + + + P+ +A +A+
Sbjct: 191 EGARNNVLCNVIVP-TAASRMTEGI-LPDILFNEL--------------KPKLIAPVVAY 234
Query: 231 LASDDASFTTGEHLTVDGGRHA 252
L + G ++ G
Sbjct: 235 LCHESCE-DNGSYIESAAGWAT 255
>1wma_A Carbonyl reductase [NADPH] 1; oxidoreductase; HET: AB3 NDP PE5 P33;
1.24A {Homo sapiens} SCOP: c.2.1.2 PDB: 3bhi_A* 3bhj_A*
3bhm_A* 2pfg_A* 1n5d_A* 2hrb_A*
Length = 276
Score = 130 bits (328), Expect = 8e-37
Identities = 54/239 (22%), Positives = 87/239 (36%), Gaps = 48/239 (20%)
Query: 4 TGKVILVTGASSGIGAATALHLAKL-DAKLAITGRNVEQLDKVSESCQSVSKNKPLVIQA 62
V LVTG + GIG A L +L + +T R+V + + Q+ P Q
Sbjct: 3 GIHVALVTGGNKGIGLAIVRDLCRLFSGDVVLTARDVTRGQAAVQQLQA-EGLSPRFHQL 61
Query: 63 DLTSEEDTKRIIDTVVKHYQKLNVLVNNAGILEAGSIENTSLEQYDKIMNVNVRSIYHLT 122
D+ + + + D + K Y L+VLVNNAGI + Q + M N +
Sbjct: 62 DIDDLQSIRALRDFLRKEYGGLDVLVNNAGIAFKVADPTPFHIQAEVTMKTNFFGTRDVC 121
Query: 123 MLAVPHLISTKGNIVNVSSVNGLRSFPGV------------------------------- 151
+P LI +G +VNVSS+ +R+
Sbjct: 122 TELLP-LIKPQGRVVNVSSIMSVRALKSCSPELQQKFRSETITEEELVGLMNKFVEDTKK 180
Query: 152 ----------LAYCVSKAAVDQFTSCTALELASK----GVRVNSVNPGVTLTNLHKNSG 196
AY V+K V + A +L+ + + +N+ PG T++
Sbjct: 181 GVHQKEGWPSSAYGVTKIGVTVLSRIHARKLSEQRKGDKILLNACCPGWVRTDMAGPKA 239
>3o26_A Salutaridine reductase; short chain dehydrogenase/reductases,
oxidoreductase; HET: NDP; 1.91A {Papaver somniferum}
Length = 311
Score = 127 bits (320), Expect = 3e-35
Identities = 59/314 (18%), Positives = 105/314 (33%), Gaps = 98/314 (31%)
Query: 4 TGKVILVTGASSGIGAATALHLAKLDAKLAITGRNVEQLDKVSESCQSVSKNKPLVIQAD 63
+ +VTG + GIG L+ + +T R+V + + E ++ + + Q D
Sbjct: 11 KRRCAVVTGGNKGIGFEICKQLSSNGIMVVLTCRDVTKGHEAVEKLKNSNHENVVFHQLD 70
Query: 64 LTSEEDTKR-IIDTVVKHYQKLNVLVNNAGI----------------------------- 93
+T T + D + H+ KL++LVNNAG+
Sbjct: 71 VTDPIATMSSLADFIKTHFGKLDILVNNAGVAGFSVDADRFKAMISDIGEDSEELVKIYE 130
Query: 94 -LEAGSIENTSLEQYDKIMNVNVRSIYHLTMLAVPHLI-STKGNIVNVSSVNGLRSF--- 148
EA + + + E ++ + +N + +T + +P L S IVNVSS G +
Sbjct: 131 KPEAQELMSETYELAEECLKINYNGVKSVTEVLIPLLQLSDSPRIVNVSSSTGSLKYVSN 190
Query: 149 ----------------------------------------PGVLAYCVSKAAVDQFTSCT 168
AY SKA ++ +T
Sbjct: 191 ETALEILGDGDALTEERIDMVVNMLLKDFKENLIETNGWPSFGAAYTTSKACLNAYTRVL 250
Query: 169 ALELASKGVRVNSVNPGVTLTNLHKNSGIDQQAYQNFLERSKETHALGRVGNPEEVAKAI 228
A ++ +VN V PG+ T ++ G + EE A+ +
Sbjct: 251 ANKI--PKFQVNCVCPGLVKTEMNYGIGN----------YT-----------AEEGAEHV 287
Query: 229 AFLASDDASFTTGE 242
+A +G
Sbjct: 288 VRIALFPDDGPSGF 301
>1yo6_A Putative carbonyl reductase sniffer; tyrosine-dependent
oxidoreductase (SDR family), structural genomics, PSI;
2.60A {Caenorhabditis elegans} SCOP: c.2.1.2
Length = 250
Score = 120 bits (302), Expect = 3e-33
Identities = 54/212 (25%), Positives = 96/212 (45%), Gaps = 28/212 (13%)
Query: 4 TGKVILVTGASSGIGAATALHLAKLDAKLAI--TGRNVEQLDKVSESCQSVSKNKPLVIQ 61
+ ++VTGA+ GIG L K I T R+VE+ ++ +S+ ++ V+
Sbjct: 2 SPGSVVVTGANRGIGLGLVQQLVKDKNIRHIIATARDVEKATEL----KSIKDSRVHVLP 57
Query: 62 ADLTSEEDTKRIIDTVVKHY--QKLNVLVNNAGILEA-GSIENTSLEQYDKIMNVNVRSI 118
+T ++ + V + L++L+NNAG+L + G+ + + ++VN S+
Sbjct: 58 LTVTCDKSLDTFVSKVGEIVGSDGLSLLINNAGVLLSYGTNTEPNRAVIAEQLDVNTTSV 117
Query: 119 YHLTMLAVPHL------------ISTKGNIVNVSSVNG-------LRSFPGVLAYCVSKA 159
LT +P L ++ ++ +SS G + VLAY +SKA
Sbjct: 118 VLLTQKLLPLLKNAASKESGDQLSVSRAAVITISSGLGSITDNTSGSAQFPVLAYRMSKA 177
Query: 160 AVDQFTSCTALELASKGVRVNSVNPGVTLTNL 191
A++ F A++L V V + PG TNL
Sbjct: 178 AINMFGRTLAVDLKDDNVLVVNFCPGWVQTNL 209
>1sny_A Sniffer CG10964-PA; alpha and beta protein, rossmann fold,
dinucleotide binding oxidoreductase; HET: NAP; 1.75A
{Drosophila melanogaster} SCOP: c.2.1.2
Length = 267
Score = 118 bits (297), Expect = 3e-32
Identities = 49/207 (23%), Positives = 90/207 (43%), Gaps = 23/207 (11%)
Query: 6 KVILVTGASSGIGAATALHLAKLDAKLAI---TGRNVEQLDKVSESCQSVSKNKPLVIQA 62
IL+TG + G+G L L T RN EQ ++ + ++ S +++
Sbjct: 22 NSILITGCNRGLGLGLVKALLNLPQPPQHLFTTCRNREQAKELEDLAKNHSNIH--ILEI 79
Query: 63 DLTSEEDTKRIIDTV--VKHYQKLNVLVNNAGIL-EAGSIENTSLEQYDKIMNVNVRSIY 119
DL + + +++ + V Q LNVL NNAGI ++ I ++ + N
Sbjct: 80 DLRNFDAYDKLVADIEGVTKDQGLNVLFNNAGIAPKSARITAVRSQELLDTLQTNTVVPI 139
Query: 120 HLTMLAVPHL------------ISTKGNIVNVSSVNG---LRSFPGVLAYCVSKAAVDQF 164
L +P L + I+N+SS+ G + G+ AY SK+A++
Sbjct: 140 MLAKACLPLLKKAAKANESQPMGVGRAAIINMSSILGSIQGNTDGGMYAYRTSKSALNAA 199
Query: 165 TSCTALELASKGVRVNSVNPGVTLTNL 191
T +++L + + S++PG T++
Sbjct: 200 TKSLSVDLYPQRIMCVSLHPGWVKTDM 226
>3nrc_A Enoyl-[acyl-carrier-protein] reductase (NADH); rossmann fold, NADH
BI oxidoreductase; HET: NAD TCL; 2.10A {Francisella
tularensis subsp} PDB: 2jjy_A*
Length = 280
Score = 107 bits (269), Expect = 4e-28
Identities = 69/266 (25%), Positives = 121/266 (45%), Gaps = 25/266 (9%)
Query: 1 MNF-TGKVILVTGASSG--IGAATALHLAKLDAKLAITGRNVEQLDKVSESCQSVSKNKP 57
M F GK IL+TG S I A + + A+LA T + D+V + C N
Sbjct: 21 MGFLAGKKILITGLLSNKSIAYGIAKAMHREGAELAFTYVG-QFKDRVEKLCAEF--NPA 77
Query: 58 LVIQADLTSEEDTKRIIDTVVKHYQKLNVLVNNAGI-----LEAGSIENTSLEQYDKIMN 112
V+ D+ S+++ K + + K + L+ +V++ LE I+ + E + +
Sbjct: 78 AVLPCDVISDQEIKDLFVELGKVWDGLDAIVHSIAFAPRDQLEGNFIDCVTREGFSIAHD 137
Query: 113 VNVRSIYHLTMLAVPHLISTKGNIVNVSSVNGLRSFPGVLAY---CVSKAAVDQFTSCTA 169
++ S L + + ++V ++ + ++ P Y V+KA+++ TA
Sbjct: 138 ISAYSFAALAKEGRSMMKNRNASMVALTYIGAEKAMPS---YNTMGVAKASLEATVRYTA 194
Query: 170 LELASKGVRVNSVNPG--VTLTNLHKNSGIDQQAYQNFLERSKETHALGRVGNPEEVAKA 227
L L G++VN+V+ G TL SGI ++ L+ + L + + EV
Sbjct: 195 LALGEDGIKVNAVSAGPIKTLAA----SGISN--FKKMLDYNAMVSPLKKNVDIMEVGNT 248
Query: 228 IAFLASDDASFTTGEHLTVDGGRHAM 253
+AFL SD A+ TGE + VD G H +
Sbjct: 249 VAFLCSDMATGITGEVVHVDAGYHCV 274
>4alk_A ENR, enoyl-[acyl-carrier-protein] reductase [NADPH];
oxidoreductase, short-chain dehydrogenase/reductase
superfam fatty acid biosynthesis; HET: NAP E9P GLU;
1.90A {Staphylococcus aureus} PDB: 4alj_A* 4ali_A*
4alm_A 4aln_A 3gr6_A* 3gns_A* 3gnt_A 4all_A*
Length = 282
Score = 105 bits (265), Expect = 2e-27
Identities = 62/264 (23%), Positives = 118/264 (44%), Gaps = 21/264 (7%)
Query: 1 MNFTGKVILVTGASSG--IGAATALHLAKLDAKLAITGRNVEQLDKVSESCQSVSKNKPL 58
+N K ++ G ++ I A L +L AKL T R ++ + + +++ +
Sbjct: 28 VNLENKTYVIMGIANKRSIAFGVAKVLDQLGAKLVFTYRKERSRKELEKLLEQLNQPEAH 87
Query: 59 VIQADLTSEEDTKRIIDTVVKHYQKLNVLVNNAGILE----AGSIENTSLEQYDKIMNVN 114
+ Q D+ S+E+ + + K ++ + ++ G TS E + +++
Sbjct: 88 LYQIDVQSDEEVINGFEQIGKDVGNIDGVYHSIAFANMEDLRGRFSETSREGFLLAQDIS 147
Query: 115 VRSIYHLTMLAVPHLISTKGNIVNVSSVNGLRSFPGVLAY---CVSKAAVDQFTSCTALE 171
S+ + A L+ G+IV + + G + Y V+KA+++ AL+
Sbjct: 148 SYSLTIVAHEAKK-LMPEGGSIVATTYLGGEFAVQN---YNVMGVAKASLEANVKYLALD 203
Query: 172 LASKGVRVNSVNPG--VTLTNLHKNSGIDQQAYQNFLERSKETHALGRVGNPEEVAKAIA 229
L +RVN+++ G TL+ G+ + L+ +E L R + EV K A
Sbjct: 204 LGPDNIRVNAISAGPIRTLSA----KGVGG--FNTILKEIEERAPLKRNVDQVEVGKTAA 257
Query: 230 FLASDDASFTTGEHLTVDGGRHAM 253
+L SD +S TGE++ VD G HA+
Sbjct: 258 YLLSDLSSGVTGENIHVDSGFHAI 281
>3oig_A Enoyl-[acyl-carrier-protein] reductase [NADH]; fatty acid
synthesis, rossmann-like fold, enoyl-ACP reductas
binding; HET: NAD IMJ; 1.25A {Bacillus subtilis} PDB:
3oif_A* 2qio_A* 3oje_A 3ojf_A*
Length = 266
Score = 102 bits (256), Expect = 3e-26
Identities = 65/265 (24%), Positives = 119/265 (44%), Gaps = 23/265 (8%)
Query: 1 MNFTGKVILVTGASSG--IGAATALHLAKLDAKLAITGRNVEQLDKVSESCQSVSKNKPL 58
+ G+ I+V G ++ I A L + A+L T V E ++ +N +
Sbjct: 3 FSLEGRNIVVMGVANKRSIAWGIARSLHEAGARLIFTYAGERLEKSVHELAGTLDRNDSI 62
Query: 59 VIQADLTSEEDTKRIIDTVVKHYQKLNVLVNNAGI-----LEAGSIENTSLEQYDKIMNV 113
++ D+T++ + + ++ + ++ + + L G NT+ + + N+
Sbjct: 63 ILPCDVTNDAEIETCFASIKEQVGVIHGIAHCIAFANKEELV-GEYLNTNRDGFLLAHNI 121
Query: 114 NVRSIYHLTMLAVPHLISTKGNIVNVSSVNGLRSFPGVLAY---CVSKAAVDQFTSCTAL 170
+ S+ + A P +++ G+IV ++ + G P Y V+KA++D A
Sbjct: 122 SSYSLTAVVKAARP-MMTEGGSIVTLTYLGGELVMPN---YNVMGVAKASLDASVKYLAA 177
Query: 171 ELASKGVRVNSVNPG--VTLTNLHKNSGIDQQAYQNFLERSKETHALGRVGNPEEVAKAI 228
+L + +RVNS++ G TL+ GI + + L+ +E L R PEEV
Sbjct: 178 DLGKENIRVNSISAGPIRTLSA----KGISD--FNSILKDIEERAPLRRTTTPEEVGDTA 231
Query: 229 AFLASDDASFTTGEHLTVDGGRHAM 253
AFL SD + TGE+L VD G H
Sbjct: 232 AFLFSDMSRGITGENLHVDSGFHIT 256
>2wyu_A Enoyl-[acyl carrier protein] reductase; oxidoreductase, fatty acid
biosynthesis, oxidation reduction; 1.50A {Thermus
thermophilus} PDB: 1ulu_A 2wyv_A* 2wyw_A* 2yw9_A*
Length = 261
Score = 101 bits (253), Expect = 6e-26
Identities = 67/264 (25%), Positives = 117/264 (44%), Gaps = 23/264 (8%)
Query: 1 MNFTGKVILVTGASSG--IGAATALHLAKLDAKLAITGRNVEQLDKVSESCQSVSKNKPL 58
++ +GK LV G ++ +G A A L + A++A++ + + + +++ L
Sbjct: 4 VDLSGKKALVMGVTNQRSLGFAIAAKLKEAGAEVALSYQAERLRPEAEKLAEAL--GGAL 61
Query: 59 VIQADLTSEEDTKRIIDTVVKHYQKLNVLVNNAGILE----AGSIENTSLEQYDKIMNVN 114
+ +AD+T +E+ + V + + L+ LV+ G +T + + + V+
Sbjct: 62 LFRADVTQDEELDALFAGVKEAFGGLDYLVHAIAFAPREAMEGRYIDTRRQDWLLALEVS 121
Query: 115 VRSIYHLTMLAVPHLISTKGNIVNVSSVNGLRSFPGVLAY---CVSKAAVDQFTSCTALE 171
S+ + A P L+ G IV ++ + P Y ++KAA++ A E
Sbjct: 122 AYSLVAVARRAEP-LLREGGGIVTLTYYASEKVVPK---YNVMAIAKAALEASVRYLAYE 177
Query: 172 LASKGVRVNSVNPG--VTLTNLHKNSGIDQQAYQNFLERSKETHALGRVGNPEEVAKAIA 229
L KGVRVN+++ G T+ I + +R +T L R EEV
Sbjct: 178 LGPKGVRVNAISAGPVRTVAA----RSIPG--FTKMYDRVAQTAPLRRNITQEEVGNLGL 231
Query: 230 FLASDDASFTTGEHLTVDGGRHAM 253
FL S AS TGE + VD G H M
Sbjct: 232 FLLSPLASGITGEVVYVDAGYHIM 255
>3ek2_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid,
oxidoreductase, structural genomics; 1.90A {Burkholderia
pseudomallei 1710B}
Length = 271
Score = 100 bits (251), Expect = 2e-25
Identities = 71/266 (26%), Positives = 119/266 (44%), Gaps = 25/266 (9%)
Query: 1 MNF-TGKVILVTGASSG--IGAATALHLAKLDAKLAITGRNVEQLDKVSESCQSVSKNKP 57
M F GK IL+TG S I A + A+LA T D+++E
Sbjct: 9 MGFLDGKRILLTGLLSNRSIAYGIAKACKREGAELAFTYVGDRFKDRITEFAAEF--GSE 66
Query: 58 LVIQADLTSEEDTKRIIDTVVKHYQKLNVLVNNAGI-----LEAGSIENTSLEQYDKIMN 112
LV D+ + + ++ H+ L+ LV++ G + ++ + E + +
Sbjct: 67 LVFPCDVADDAQIDALFASLKTHWDSLDGLVHSIGFAPREAIAGDFLDGLTRENFRIAHD 126
Query: 113 VNVRSIYHLTMLAVPHLISTKGNIVNVSSVNGLRSFPGVLAY---CVSKAAVDQFTSCTA 169
++ S L A+P ++S +++ +S + R+ P Y ++KAA++ A
Sbjct: 127 ISAYSFPALAKAALP-MLSDDASLLTLSYLGAERAIPN---YNTMGLAKAALEASVRYLA 182
Query: 170 LELASKGVRVNSVNPG--VTLTNLHKNSGIDQQAYQNFLERSKETHALGRVGNPEEVAKA 227
+ L +KGVRVN+++ G TL SGI + L+ + L R E+V A
Sbjct: 183 VSLGAKGVRVNAISAGPIKTLAA----SGIKS--FGKILDFVESNSPLKRNVTIEQVGNA 236
Query: 228 IAFLASDDASFTTGEHLTVDGGRHAM 253
AFL SD AS T E + VD G +A+
Sbjct: 237 GAFLLSDLASGVTAEVMHVDSGFNAV 262
>2p91_A Enoyl-[acyl-carrier-protein] reductase [NADH]; NADH-dependent
enoyl-ACP reductase, FABI, aquifex A VF5, structural
genomics, PSI; 2.00A {Aquifex aeolicus}
Length = 285
Score = 100 bits (250), Expect = 3e-25
Identities = 67/266 (25%), Positives = 120/266 (45%), Gaps = 25/266 (9%)
Query: 1 MNF-TGKVILVTGASSG--IGAATALHLAKLDAKLAITGRNVEQLDKVSESCQSVSKNKP 57
M GK L+TG ++ I A + A+LA T + +V E +
Sbjct: 16 MGLLEGKRALITGVANERSIAYGIAKSFHREGAQLAFTYATPKLEKRVREIAKGF--GSD 73
Query: 58 LVIQADLTSEEDTKRIIDTVVKHYQKLNVLVNNAGI-----LEAGSIENTSLEQYDKIMN 112
LV++ D++ +ED K + + +++ L+++V++ + G + +TS E + M+
Sbjct: 74 LVVKCDVSLDEDIKNLKKFLEENWGSLDIIVHSIAYAPKEEFK-GGVIDTSREGFKIAMD 132
Query: 113 VNVRSIYHLTMLAVPHLISTKGNIVNVSSVNGLRSFPGVLAY---CVSKAAVDQFTSCTA 169
++V S+ LT +P + G IV +S + P Y ++KAA++ A
Sbjct: 133 ISVYSLIALTRELLPLMEGRNGAIVTLSYYGAEKVVPH---YNVMGIAKAALESTVRYLA 189
Query: 170 LELASKGVRVNSVNPG--VTLTNLHKNSGIDQQAYQNFLERSKETHALGRVGNPEEVAKA 227
++A G R+N+++ G TL I + +E + + + G+ E+V
Sbjct: 190 YDIAKHGHRINAISAGPVKTLAA----YSITG--FHLLMEHTTKVNPFGKPITIEDVGDT 243
Query: 228 IAFLASDDASFTTGEHLTVDGGRHAM 253
FL SD A TGE + VD G H M
Sbjct: 244 AVFLCSDWARAITGEVVHVDNGYHIM 269
>2h7i_A Enoyl-[acyl-carrier-protein] reductase [NADH]; oxidoreductase,
INHA, enoyl acyl carrier reductase, pyrrolid
carboxamide; HET: NAD 566; 1.62A {Mycobacterium
tuberculosis} SCOP: c.2.1.2 PDB: 1p44_A* 1p45_A* 2b35_A*
2b36_A* 2b37_A* 2aq8_A* 2h7l_A* 2h7m_A* 2h7n_A* 2h7p_A*
2nsd_A* 2pr2_A* 2x22_A* 2x23_A* 3fne_A* 3fnf_A* 3fng_A*
3fnh_A* 3oew_A* 2aqh_A* ...
Length = 269
Score = 99.2 bits (248), Expect = 4e-25
Identities = 59/275 (21%), Positives = 107/275 (38%), Gaps = 31/275 (11%)
Query: 1 MNF-TGKVILVTGASSG--IGAATALHLAKLDAKLAITGRNVEQL-DKVSESCQSVSKNK 56
GK ILV+G + I A + A+L +TG + +L ++++ + K
Sbjct: 2 TGLLDGKRILVSGIITDSSIAFHIARVAQEQGAQLVLTGFDRLRLIQRITDRLPA----K 57
Query: 57 PLVIQADLTSEEDTKRIIDTVVKHY---QKLNVLVN-----NAGILEAGSIENTSLEQYD 108
+++ D+ +EE + V + KL+ +V+ + +
Sbjct: 58 APLLELDVQNEEHLASLAGRVTEAIGAGNKLDGVVHSIGFMPQTGMGINPFFDAPYADVS 117
Query: 109 KIMNVNVRSIYHLTMLAVPHLISTKGNIVNVSSVNGLRSFPGVLAY---CVSKAAVDQFT 165
K ++++ S + +P +++ G+IV + + R+ P Y V+K+A++
Sbjct: 118 KGIHISAYSYASMAKALLP-IMNPGGSIVGMDF-DPSRAMPA---YNWMTVAKSALESVN 172
Query: 166 SCTALELASKGVRVNSVNPG--VTLT----NLHKNSGIDQQAYQNFLERSKETHALGR-V 218
A E GVR N V G TL Q E + +G +
Sbjct: 173 RFVAREAGKYGVRSNLVAAGPIRTLAMSAIVGGALGEEAGAQIQLLEEGWDQRAPIGWNM 232
Query: 219 GNPEEVAKAIAFLASDDASFTTGEHLTVDGGRHAM 253
+ VAK + L SD TTG+ + DGG H
Sbjct: 233 KDATPVAKTVCALLSDWLPATTGDIIYADGGAHTQ 267
>3rd5_A Mypaa.01249.C; ssgcid, structural genomics, seattle structural
genomics CEN infectious disease, oxidoreductase; HET:
EPE; 1.50A {Mycobacterium paratuberculosis}
Length = 291
Score = 98.1 bits (245), Expect = 2e-24
Identities = 58/275 (21%), Positives = 99/275 (36%), Gaps = 54/275 (19%)
Query: 4 TGKVILVTGASSGIGAATALHLAKLDAKLAITGRNVEQLDKVSESCQSVSKNKPLVIQAD 63
+ +++TGA+SG+GA TA LA+ A + + R+ + + + + + V + D
Sbjct: 15 AQRTVVITGANSGLGAVTARELARRGATVIMAVRDTRKGEAAARTM----AGQVEVRELD 70
Query: 64 LTSEEDTKRIIDTVVKHYQKLNVLVNNAGILEAGSIENTSLEQYDKIMNVNVRSIYH--- 120
L + +VL+NNAGI +++ ++ + N H
Sbjct: 71 LQDLSS----VRRFADGVSGADVLINNAGI--MAVPYALTVDGFESQIGTN-----HLGH 119
Query: 121 --LTMLAVPHLISTKGNIVNVSSVN-------------GLRSFPGVLAYCVSKAAVDQFT 165
LT L +P L +V VSS+ R + LAY SK A FT
Sbjct: 120 FALTNLLLPRL---TDRVVTVSSMAHWPGRINLEDLNWRSRRYSPWLAYSQSKLANLLFT 176
Query: 166 SCTALELASK------GVRVNSVNPGVTLTNLHKNSGIDQQAYQNFLERSKETHALGRVG 219
EL + +R + +PG + TNL SG + +
Sbjct: 177 ----SELQRRLTAAGSPLRALAAHPGYSHTNLQGASG------RKLGDALMSAATRVVAT 226
Query: 220 NPEEVAKAIAFLASDDASFTTGEHLTVDGGRHAMC 254
+ + A+ + AS D + G
Sbjct: 227 DADFGARQTLYAASQDL--PGDSFVGPRFGYLGRT 259
>2pd4_A Enoyl-[acyl-carrier-protein] reductase [NADH]; antibacterial
target, type II fatty acid biosynthesis,
enoyl-ACP-reductase, FABI; HET: NAD DCN; 2.30A
{Helicobacter pylori} SCOP: c.2.1.2 PDB: 2pd3_A*
Length = 275
Score = 97.7 bits (244), Expect = 2e-24
Identities = 71/266 (26%), Positives = 121/266 (45%), Gaps = 26/266 (9%)
Query: 1 MNF-TGKVILVTGASSG--IGAATALHLAKLDAKLAITGRNVEQLDKVSESCQSVSKNKP 57
M F GK L+ G ++ I A A LA T N +V Q + N P
Sbjct: 1 MGFLKGKKGLIVGVANNKSIAYGIAQSCFNQGATLAFTYLNESLEKRVRPIAQEL--NSP 58
Query: 58 LVIQADLTSEEDTKRIIDTVVKHYQKLNVLVNNAGI-----LEAGSIENTSLEQYDKIMN 112
V + D++ EE K + ++V K L+ +V++ LE GS+ TS ++ M
Sbjct: 59 YVYELDVSKEEHFKSLYNSVKKDLGSLDFIVHSVAFAPKEALE-GSLLETSKSAFNTAME 117
Query: 113 VNVRSIYHLTMLAVPHLISTKGNIVNVSSVNGLRSFPGVLAY---CVSKAAVDQFTSCTA 169
++V S+ LT P L++ +++ +S + + Y ++KAA++ A
Sbjct: 118 ISVYSLIELTNTLKP-LLNNGASVLTLSYLGSTKYMAH---YNVMGLAKAALESAVRYLA 173
Query: 170 LELASKGVRVNSVNPG--VTLTNLHKNSGIDQQAYQNFLERSKETHALGRVGNPEEVAKA 227
++L +RVN+++ G TL + SGI ++ L+ ++ L + + EEV A
Sbjct: 174 VDLGKHHIRVNALSAGPIRTLAS----SGIAD--FRMILKWNEINAPLRKNVSLEEVGNA 227
Query: 228 IAFLASDDASFTTGEHLTVDGGRHAM 253
+L S +S +GE VD G H M
Sbjct: 228 GMYLLSSLSSGVSGEVHFVDAGYHVM 253
>1qsg_A Enoyl-[acyl-carrier-protein] reductase; enoyl reductase,
oxidoreductase; HET: GLC NAD TCL; 1.75A {Escherichia
coli} SCOP: c.2.1.2 PDB: 1c14_A* 1i2z_A* 1i30_A* 1lx6_A*
1lxc_A* 1mfp_A* 2fhs_A 1qg6_A* 1dfg_A* 1dfh_A* 1d8a_A*
1dfi_A* 3pje_A* 3pjd_A* 3pjf_A*
Length = 265
Score = 96.9 bits (242), Expect = 3e-24
Identities = 62/266 (23%), Positives = 117/266 (43%), Gaps = 25/266 (9%)
Query: 1 MNF-TGKVILVTGASSG--IGAATALHLAKLDAKLAITGRNVEQLDKVSESCQSVSKNKP 57
M F +GK ILVTG +S I A + + A+LA T +N + +V E +
Sbjct: 4 MGFLSGKRILVTGVASKLSIAYGIAQAMHREGAELAFTYQNDKLKGRVEEFAAQL--GSD 61
Query: 58 LVIQADLTSEEDTKRIIDTVVKHYQKLNVLVNNAGI-----LEAGSIENTSLEQYDKIMN 112
+V+Q D+ + + + K + K + V++ G L+ + + E + +
Sbjct: 62 IVLQCDVAEDASIDTMFAELGKVWPKFDGFVHSIGFAPGDQLDGDYVNAVTREGFKIAHD 121
Query: 113 VNVRSIYHLTMLAVPHLISTKGNIVNVSSVNGLRSFPGVLAY---CVSKAAVDQFTSCTA 169
++ S + +++ ++ +S + R+ P Y ++KA+++ A
Sbjct: 122 ISSYSFVAMAKACRS-MLNPGSALLTLSYLGAERAIPN---YNVMGLAKASLEANVRYMA 177
Query: 170 LELASKGVRVNSVNPG--VTLTNLHKNSGIDQQAYQNFLERSKETHALGRVGNPEEVAKA 227
+ +GVRVN+++ G TL SGI ++ L + + R E+V +
Sbjct: 178 NAMGPEGVRVNAISAGPIRTLAA----SGIKD--FRKMLAHCEAVTPIRRTVTIEDVGNS 231
Query: 228 IAFLASDDASFTTGEHLTVDGGRHAM 253
AFL SD ++ +GE + VDGG
Sbjct: 232 AAFLCSDLSAGISGEVVHVDGGFSIA 257
>3k31_A Enoyl-(acyl-carrier-protein) reductase; ssgcid, NIH, niaid, SBRI,
UW, decode, eonyl-(acyl-carrier-PR reductase, NAD,
oxidoreductase; HET: NAD; 1.80A {Anaplasma
phagocytophilum} PDB: 3k2e_A*
Length = 296
Score = 96.6 bits (241), Expect = 5e-24
Identities = 62/265 (23%), Positives = 116/265 (43%), Gaps = 25/265 (9%)
Query: 1 MNFTGKVILVTGASSG--IGAATALHLAKLDAKLAITGRNVEQLDKVSESCQSVSKNKPL 58
M GK ++ G ++ + A + A++A+T + +V +S+ L
Sbjct: 26 MLMEGKKGVIIGVANDKSLAWGIAKAVCAQGAEVALTYLSETFKKRVDPLAESL--GVKL 83
Query: 59 VIQADLTSEEDTKRIIDTVVKHYQKLNVLVNNAGI-----LEAGSIENTSLEQYDKIMNV 113
+ D++ E + + + + L+ +V+ L+ G +TSL + M++
Sbjct: 84 TVPCDVSDAESVDNMFKVLAEEWGSLDFVVHAVAFSDKNELK-GRYVDTSLGNFLTSMHI 142
Query: 114 NVRSIYHLTMLAVPHLISTKGNIVNVSSVNGLRSFPGVLAY---CVSKAAVDQFTSCTAL 170
+ S ++ A P L++ G+I+ +S + P Y V KAA++ A+
Sbjct: 143 SCYSFTYIASKAEP-LMTNGGSILTLSYYGAEKVVPH---YNVMGVCKAALEASVKYLAV 198
Query: 171 ELASKGVRVNSVNPG--VTLTNLHKNSGIDQQAYQNFLERSKETHALGRVGNPEEVAKAI 228
+L + +RVN+++ G TL + SGI + L +K L R ++V A
Sbjct: 199 DLGKQQIRVNAISAGPVRTLAS----SGISD--FHYILTWNKYNSPLRRNTTLDDVGGAA 252
Query: 229 AFLASDDASFTTGEHLTVDGGRHAM 253
+L SD TTGE + VD G H +
Sbjct: 253 LYLLSDLGRGTTGETVHVDCGYHVV 277
>3grk_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, niaid,
structural genomics, seattle structural genomics center
for infectious disease; 2.35A {Brucella melitensis} PDB:
4eit_A*
Length = 293
Score = 96.2 bits (240), Expect = 8e-24
Identities = 60/266 (22%), Positives = 110/266 (41%), Gaps = 26/266 (9%)
Query: 1 MNF-TGKVILVTGASSG--IGAATALHLAKLDAKLAITGRNVEQLDKVSESCQSVSKNKP 57
GK L+ G ++ I A + A+LA T + +V + +
Sbjct: 26 SGLLQGKRGLILGVANNRSIAWGIAKAAREAGAELAFTYQGDALKKRVEPLAEEL--GAF 83
Query: 58 LVIQADLTSEEDTKRIIDTVVKHYQKLNVLVNNAGI-----LEAGSIENTSLEQYDKIMN 112
+ D+ + +T+ K + KL+ LV+ G L G +TS + M
Sbjct: 84 VAGHCDVADAASIDAVFETLEKKWGKLDFLVHAIGFSDKDELT-GRYIDTSEANFTNTML 142
Query: 113 VNVRSIYHLTMLAVPHLISTKGNIVNVSSVNGLRSFPGVLAY---CVSKAAVDQFTSCTA 169
++V S+ ++ A L++ G+I+ ++ + P Y V+KAA++ A
Sbjct: 143 ISVYSLTAVSRRAEK-LMADGGSILTLTYYGAEKVMPN---YNVMGVAKAALEASVKYLA 198
Query: 170 LELASKGVRVNSVNPG--VTLTNLHKNSGIDQQAYQNFLERSKETHALGRVGNPEEVAKA 227
++L + +RVN+++ G TL SGI ++ L+ ++ L R +EV
Sbjct: 199 VDLGPQNIRVNAISAGPIKTLAA----SGIGD--FRYILKWNEYNAPLRRTVTIDEVGDV 252
Query: 228 IAFLASDDASFTTGEHLTVDGGRHAM 253
+ SD + TGE D G H +
Sbjct: 253 GLYFLSDLSRSVTGEVHHADSGYHVI 278
>2o2s_A Enoyl-acyl carrier reductase; enoyl reductase, triclosan, rossmann
fold, oxidoreductase; HET: NAD TCL; 2.60A {Toxoplasma
gondii} PDB: 2o50_A 3nj8_A*
Length = 315
Score = 87.9 bits (218), Expect = 1e-20
Identities = 69/300 (23%), Positives = 110/300 (36%), Gaps = 56/300 (18%)
Query: 1 MNFTGKVILVTGASS--GIGAATALHLAKLDAKLAIT---------------GRNVEQLD 43
++ G+ V G + G G A A HLA A++A+ GR E
Sbjct: 5 IDLRGQTAFVAGVADSHGYGWAIAKHLASAGARVALGTWPPVLGLFQKSLQSGRLDEDRK 64
Query: 44 KVSESCQSVSKNKPL--------VIQADLTSEEDT--------KRIIDTVVKHYQKLNVL 87
S + PL + D+ + K + V + +++L
Sbjct: 65 LPDGSLIEFAGVYPLDAAFDKPEDVPQDIKDNKRYAGVDGYTIKEVAVKVKQDLGNIDIL 124
Query: 88 VN---NAGILEAGSIENTSLEQYDKIMNVNVRSIYHLTMLAVPHLISTKGNIVNVSSVNG 144
V+ N + + TS + Y + + S L P +++ G+ V +S +
Sbjct: 125 VHSLANGPEVT-KPLLETSRKGYLAASSNSAYSFVSLLQHFGP-IMNEGGSAVTLSYLAA 182
Query: 145 LRSFPGVLAYC----VSKAAVDQFTSCTALELASK-GVRVNSVNPG--VTLTNLHKNSGI 197
R PG Y +KAA++ T A E K GVRVN+++ G + S I
Sbjct: 183 ERVVPG---YGGGMSSAKAALESDTRTLAWEAGQKYGVRVNAISAGPLKSRAA----SAI 235
Query: 198 -DQQAYQNF---LERSKETHALGRVGNPEEVAKAIAFLASDDASFTTGEHLTVDGGRHAM 253
++ S L R + ++V A FL S A +G L VD G HAM
Sbjct: 236 GKSGEKSFIDYAIDYSYNNAPLRRDLHSDDVGGAALFLLSPLARAVSGVTLYVDNGLHAM 295
>1d7o_A Enoyl-[acyl-carrier protein] reductase (NADH) PRE; triclosan, enoyl
reductase, oxidoreductase; HET: NAD TCL; 1.90A {Brassica
napus} SCOP: c.2.1.2 PDB: 1eno_A* 1enp_A* 1cwu_A*
Length = 297
Score = 87.1 bits (216), Expect = 2e-20
Identities = 60/296 (20%), Positives = 112/296 (37%), Gaps = 54/296 (18%)
Query: 1 MNFTGKVILVTGASS--GIGAATALHLAKLDAKLAIT----------------------- 35
++ GK + G + G G A A LA A++ +
Sbjct: 4 IDLRGKRAFIAGIADDNGYGWAVAKSLAAAGAEILVGTWVPALNIFETSLRRGKFDQSRV 63
Query: 36 --------GRNVEQLDKVSESCQSVSKNKPLVIQADLTSEEDTKRIIDTVVKHYQKLNVL 87
+ V LD V ++ + V ++ + +S + + V + + +++L
Sbjct: 64 LPDGSLMEIKKVYPLDAVFDNPEDVPEDVKANKRYAGSSNWTVQEAAECVRQDFGSIDIL 123
Query: 88 VN---NAGILEAGSIENTSLEQYDKIMNVNVRSIYHLTMLAVPHLISTKGNIVNVSSVNG 144
V+ N + + TS + Y ++ + S L +P +++ G ++++ +
Sbjct: 124 VHSLANGPEVS-KPLLETSRKGYLAAISASSYSFVSLLSHFLP-IMNPGGASISLTYIAS 181
Query: 145 LRSFPGVLAYCVS----KAAVDQFTSCTALELASK-GVRVNSVNPG--VTLTNLHKNSGI 197
R PG Y KAA++ T A E K +RVN+++ G + I
Sbjct: 182 ERIIPG---YGGGMSSAKAALESDTRVLAFEAGRKQNIRVNTISAGPLGSRA----AKAI 234
Query: 198 DQQAYQNFLERSKETHALGRVGNPEEVAKAIAFLASDDASFTTGEHLTVDGGRHAM 253
+E S + + +EV A AFL S AS TG + VD G ++M
Sbjct: 235 GF--IDTMIEYSYNNAPIQKTLTADEVGNAAAFLVSPLASAITGATIYVDNGLNSM 288
>2ptg_A Enoyl-acyl carrier reductase; apicomplexa, enoyl (acyl-carrier-P
reductase, oxidoreductase; 2.60A {Eimeria tenella}
Length = 319
Score = 79.5 bits (196), Expect = 2e-17
Identities = 58/314 (18%), Positives = 106/314 (33%), Gaps = 71/314 (22%)
Query: 1 MNFTGKVILVTGASS--GIGAATALHLAKLDAKLAIT----------------------- 35
++ GK V G + G G A L A++ +
Sbjct: 5 VDLRGKTAFVAGVADSNGYGWAICKLLRAAGARVLVGTWPPVYSIFKKGLESSRFEQDSF 64
Query: 36 ---------------GRNVEQLDKVSESCQSVSKNKPLVIQADLTSEE--------DTKR 72
DK+ + P + +++S +
Sbjct: 65 YAQEPSSKVAAEAAEKPVDLVFDKIYPLDAVF--DTPQDVPPEVSSNKRYAGVGGFTISE 122
Query: 73 IIDTVVKHYQKLNVLVNNAGILE--AGSIENTSLEQYDKIMNVNVRSIYHLTMLAVPHLI 130
+ + V ++++LV++ + TS + Y ++ + S L +P L+
Sbjct: 123 VAEAVRADVGQIDILVHSLANGPEVTKPLLQTSRKGYLAAVSSSSYSFVSLLQHFLP-LM 181
Query: 131 STKGNIVNVSSVNGLRSFPGVLAYCVS----KAAVDQFTSCTALEL-ASKGVRVNSVNPG 185
G+ + +S + + PG Y KAA++ A E ++ VRVN ++ G
Sbjct: 182 KEGGSALALSYIASEKVIPG---YGGGMSSAKAALESDCRTLAFEAGRARAVRVNCISAG 238
Query: 186 --VTLTNLHKNSGI----DQQAYQNFLERSKETHALGRVGNPEEVAKAIAFLASDDASFT 239
+ S I D+ ++ S+ L + ++V +A FL S A
Sbjct: 239 PLKSRAA----SAIGKAGDKTFIDLAIDYSEANAPLQKELESDDVGRAALFLLSPLARAV 294
Query: 240 TGEHLTVDGGRHAM 253
TG L VD G HAM
Sbjct: 295 TGATLYVDNGLHAM 308
>3lt0_A Enoyl-ACP reductase; triclosan, triclosan variant, oxidoredu
P.falciparum; HET: NAD FT1; 1.96A {Plasmodium
falciparum} PDB: 1v35_A* 3lsy_A* 1uh5_A* 3lt1_A* 3lt2_A*
3lt4_A* 3am4_A* 3am3_A* 3am5_A* 2o2y_A* 2oos_A* 2ol4_A*
2op0_A* 2op1_A* 1vrw_A* 1zsn_A* 1zw1_A* 1zxb_A* 1zxl_A*
2foi_A* ...
Length = 329
Score = 69.2 bits (169), Expect = 6e-14
Identities = 45/328 (13%), Positives = 107/328 (32%), Gaps = 83/328 (25%)
Query: 5 GKVILVTGASS--GIGAATALHLAKLDAKLAIT--------------------------- 35
+ + G G G A L+K + K+
Sbjct: 2 EDICFIAGIGDTNGYGWGIAKELSKRNVKIIFGIWPPVYNIFMKNYKNGKFDNDMIIDKD 61
Query: 36 ----GRNVEQLDKVSESCQSVSKNKPLVIQADLTSEEDTKRIIDTVVKHYQKLNVLVNNA 91
++ D ++ + + + ++ + + + + + Y K+N+LV++
Sbjct: 62 KKMNILDMLPFDASFDTANDIDEETKNNKRYNMLQNYTIEDVANLIHQKYGKINMLVHSL 121
Query: 92 GILE--AGSIENTSLEQYDKIMNVNVRSIYHLTMLAVPHLISTKGNIVNVSSVNGLRSFP 149
+ + NTS + Y ++ + S+ L V ++ + +I++++ + P
Sbjct: 122 ANAKEVQKDLLNTSRKGYLDALSKSSYSLISLCKYFVN-IMKPQSSIISLTYHASQKVVP 180
Query: 150 GVLAYC----VSKAAVDQFTSCTALELASK-GVRVNSVNPG------------------- 185
G Y +KAA++ T A L +R+N+++ G
Sbjct: 181 G---YGGGMSSAKAALESDTRVLAYHLGRNYNIRINTISAGPLKSRAATAINKLNNTYEN 237
Query: 186 --------------------VTLTNLHKNSGIDQQAYQNFLERSKETHALGRVGNPEEVA 225
++ + +E S++ L + ++
Sbjct: 238 NTNQNKNRNRHDVHNIMNNSGEKEEKKISASQNYTFIDYAIEYSEKYAPLRQKLLSTDIG 297
Query: 226 KAIAFLASDDASFTTGEHLTVDGGRHAM 253
+FL S ++ TG+ + VD G + M
Sbjct: 298 SVASFLLSRESRAITGQTIYVDNGLNIM 325
>1lu9_A Methylene tetrahydromethanopterin dehydrogenase; alpha/beta twisted
open sheet structure, oxidoreductase; 1.90A
{Methylobacterium extorquens} SCOP: c.2.1.7 c.58.1.4
PDB: 1lua_A*
Length = 287
Score = 67.6 bits (165), Expect = 2e-13
Identities = 25/167 (14%), Positives = 55/167 (32%), Gaps = 20/167 (11%)
Query: 1 MNFTGKVILVTGASSGIGAATALHLAKLDAKLAITGRNVEQLDKVSESCQSVSKNKPLVI 60
+ GK +V + +G +A LA A++ + GR +++ ++S K V
Sbjct: 115 GSVKGKKAVVLAGTGPVGMRSAALLAGEGAEVVLCGRKLDKAQAAADSVNKRFKVN--VT 172
Query: 61 QADLTSEEDTKRIIDTVVKHYQKLNVLVNNAGILEAGSIENTSLEQYDKIMNVNVRSIYH 120
A+ + + + + G +E + ++ + + Y+
Sbjct: 173 AAETADDASRAEAVKGA-------HFVFTAGA---IG-LELLPQAAWQNESSIEIVADYN 221
Query: 121 LTMLAVPHLISTKGNIVNVSSVNGLRSF----PGVLAYCVSKAAVDQ 163
P I G R+F G L + +A + +
Sbjct: 222 AQP---PLGIGGIDATDKGKEYGGKRAFGALGIGGLKLKLHRACIAK 265
>3s8m_A Enoyl-ACP reductase; rossmann fold, oxidoreductase, NADH binding,
fatty acid SYNT enoyl-ACP; 1.60A {Xanthomonas oryzae PV}
Length = 422
Score = 62.9 bits (152), Expect = 1e-11
Identities = 44/301 (14%), Positives = 87/301 (28%), Gaps = 63/301 (20%)
Query: 5 GKVILVTGASSGIGAATALHLA-KLDAKLAITGRNVEQLDKVSESCQSVSKN-------- 55
K +LV GASSG G A+ + A A + + +
Sbjct: 61 PKKVLVIGASSGYGLASRITAAFGFGADTLGVFFEKPGTASKAGTAGWYNSAAFDKHAKA 120
Query: 56 ---KPLVIQADLTSEEDTKRIIDTVVKHY-QKLNVLVNNA-------------------- 91
I D S+ ++I+ + +++++V +
Sbjct: 121 AGLYSKSINGDAFSDAARAQVIELIKTEMGGQVDLVVYSLASPVRKLPGSGEVKRSALKP 180
Query: 92 --------------GILEAGSIENTSLEQYDKIMNVNVRSIYHL--TMLAVPHLISTKGN 135
+ SIE S ++ + + V + L L +++
Sbjct: 181 IGQTYTATAIDTNKDTIIQASIEPASAQEIEDTITVMGGQDWELWIDALEGAGVLADGAR 240
Query: 136 IVNVSSVNGLRSFP----GVLAYCVSKAAVDQFTSCTALELASKGVRVNSVNPGVTLTNL 191
V S + ++P G L +K +D+ LA G N +T
Sbjct: 241 SVAFSYIGTEITWPIYWHGALG--KAKVDLDRTAQRLNARLAKHGGGANVAVLKSVVTQ- 297
Query: 192 HKNSGIDQ-QAYQNFLERSKETHALGRVGNPEEVAKAIAFLASDDASFTTGEHLTVDGGR 250
++ I Y + + + + G E + + L + G+ VD
Sbjct: 298 -ASAAIPVMPLYISMVYK-----IMKEKGLHEGTIEQLDRLFRERLYRQDGQPAEVDEQN 351
Query: 251 H 251
Sbjct: 352 R 352
>2vz8_A Fatty acid synthase; transferase, phosphopantetheine, multienzyme,
megasynthase, fatty acid synthesis; 3.2A {Sus scrofa}
PDB: 2vz9_A*
Length = 2512
Score = 47.2 bits (112), Expect = 3e-06
Identities = 34/164 (20%), Positives = 64/164 (39%), Gaps = 11/164 (6%)
Query: 5 GKVILVTGASSGIGAATALHLAKLDAK-LAITGRNVEQLDKVSESCQSVSKN--KPLVIQ 61
K ++TG G G A L A+ L +T R+ + + + + + LV
Sbjct: 1884 HKSYVITGGLGGFGLQLAQWLRLRGAQKLVLTSRSGIRTGYQARQVREWRRQGVQVLVST 1943
Query: 62 ADLTSEEDTKRIIDTVVKHYQKLNVLVNNAGILEAGSIENTSLEQYDKIMNVNVRSIYHL 121
++ +S + + +I + + + N A +L +EN + E + + +L
Sbjct: 1944 SNASSLDGARSLITEATQL-GPVGGVFNLAMVLRDAVLENQTPEFFQDVSKPKYSGTANL 2002
Query: 122 ---TMLAVPHLISTKGNIVNVSSVNGLRSFPGVLAYCVSKAAVD 162
T A P L V SSV+ R G Y + +A++
Sbjct: 2003 DRVTREACPEL----DYFVIFSSVSCGRGNAGQANYGFANSAME 2042
>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR;
fatty acid synthase, acyl-carrier-protein, beta-ketoacyl
RED beta-ketoacyl synthase, dehydratase; 4.00A
{Saccharomyces cerevisiae}
Length = 1688
Score = 44.9 bits (106), Expect = 2e-05
Identities = 45/183 (24%), Positives = 78/183 (42%), Gaps = 31/183 (16%)
Query: 3 FTGKVILVTGASSG-IGAATALHLAKLDAKLAITGRNVEQLDKVSESCQSV-----SKNK 56
F K +L+TGA G IGA L + AK+ +T + +V++ QS+ +K
Sbjct: 474 FKDKYVLITGAGKGSIGAEVLQGLLQGGAKVVVTTSRFSK--QVTDYYQSIYAKYGAKGS 531
Query: 57 PL-VIQADLTSEEDTKRIIDTVVKHYQK------LNVLVNNAGILEAGSIENTSLEQYD- 108
L V+ + S++D + +I+ + + L+ ++ A I E G LE D
Sbjct: 532 TLIVVPFNQGSKQDVEALIEFIYDTEKNGGLGWDLDAIIPFAAIPEQG----IELEHIDS 587
Query: 109 ------KIMNVNV-RSIYHLTMLAVPHLISTKG-NIVNVSSVN-GLRSFPGVLAYCVSKA 159
+IM N+ R + + I T+ ++ S N G F G Y SK
Sbjct: 588 KSEFAHRIMLTNILRMMGCVKKQKSARGIETRPAQVILPMSPNHGT--FGGDGMYSESKL 645
Query: 160 AVD 162
+++
Sbjct: 646 SLE 648
>3slk_A Polyketide synthase extender module 2; rossmann fold, NADPH,
oxidoreductase; HET: NDP; 3.00A {Saccharopolyspora
spinosa}
Length = 795
Score = 42.8 bits (101), Expect = 6e-05
Identities = 37/179 (20%), Positives = 75/179 (41%), Gaps = 23/179 (12%)
Query: 4 TGKVI-------------LVTGASSGIGAATALHLA-KLDAK-LAITGRNVEQLDKVSES 48
GK++ LVTG + +GA A HL + + L + R +E
Sbjct: 516 VGKLVLTMPPVWDAAGTVLVTGGTGALGAEVARHLVIERGVRNLVLVSRRGPAASGAAEL 575
Query: 49 CQSVSKN--KPLVIQADLTSEEDTKRIIDTVVKHYQKLNVLVNNAGILEAGSIENTSLEQ 106
++ + + D+ E +++ ++ + L +V+ AG+L+ G E+ ++E+
Sbjct: 576 VAQLTAYGAEVSLQACDVADRETLAKVLASIPDEH-PLTAVVHAAGVLDDGVSESLTVER 634
Query: 107 YDKIMNVNVRSIYHLTMLAVPHLISTKGNIVNVSSVNGLRSFPGVLAYCVSKAAVDQFT 165
D+++ V +L L P + +V SSV+G+ G Y + + +D
Sbjct: 635 LDQVLRPKVDGARNLLELIDPDVA-----LVLFSSVSGVLGSGGQGNYAAANSFLDALA 688
>2hrz_A AGR_C_4963P, nucleoside-diphosphate-sugar epimerase; agrobacterium
tumefa structural genomics, PSI-2, protein structure
initiative; 1.85A {Agrobacterium tumefaciens}
Length = 342
Score = 41.2 bits (97), Expect = 2e-04
Identities = 20/124 (16%), Positives = 43/124 (34%), Gaps = 17/124 (13%)
Query: 1 MNFTGKVILVTGASSGIGAATALHLAKLDAKLAITGRNVEQLDKVSESCQSVSKNKPLVI 60
+ F G I + GA+ +G L K + +D +
Sbjct: 10 LYFQGMHIAIIGAAGMVGRKLTQRLVKDGSLGGKPVEKFTLIDVFQPEAPAGFSGAVDAR 69
Query: 61 QADLTSEEDTKRIID---TVVKHYQKLNVLVNNAGILEAGSIENTSLEQYDKIMNVNVRS 117
ADL++ + +++++ V+ H A I+ + + +DK +N+
Sbjct: 70 AADLSAPGEAEKLVEARPDVIFHL---------AAIVSGEAELD-----FDKGYRINLDG 115
Query: 118 IYHL 121
+L
Sbjct: 116 TRYL 119
>2fr1_A Erythromycin synthase, eryai; short chain dehydrogenase/reductase,
oxidoreductase; HET: NDP; 1.79A {Saccharopolyspora
erythraea} SCOP: c.2.1.2 c.2.1.2 PDB: 2fr0_A*
Length = 486
Score = 40.4 bits (95), Expect = 4e-04
Identities = 25/116 (21%), Positives = 49/116 (42%), Gaps = 4/116 (3%)
Query: 9 LVTGASSGIGAATALHLAKLDAK-LAITGRNVEQLDKVSESCQSVSKN--KPLVIQADLT 65
LVTG + G+G A LA+ A L + R+ D E + + V D+T
Sbjct: 230 LVTGGTGGVGGQIARWLARRGAPHLLLVSRSGPDADGAGELVAELEALGARTTVAACDVT 289
Query: 66 SEEDTKRIIDTVVKHYQKLNVLVNNAGILEAGSIENTSLEQYDKIMNVNVRSIYHL 121
E + ++ + L+ + + A L+ G+++ + E+ ++ V +L
Sbjct: 290 DRESVRELLGGIGDDVP-LSAVFHAAATLDDGTVDTLTGERIERASRAKVLGARNL 344
>1xgk_A Nitrogen metabolite repression regulator NMRA; rossmann fold,
transcriptional regulation, short chain dehyd
reductase, NADP binding; 1.40A {Emericella nidulans}
SCOP: c.2.1.2 PDB: 1k6x_A* 1k6j_A 1k6i_A* 1ti7_A*
2vus_A 2vut_A* 2vuu_A*
Length = 352
Score = 39.8 bits (93), Expect = 5e-04
Identities = 12/72 (16%), Positives = 24/72 (33%), Gaps = 8/72 (11%)
Query: 1 MNFTGKVILVTGASSGIGAATALHLAKLDAKL-AITGRNVEQLDKVSESCQSVSKNKPL- 58
M K I V GA+ GA+ A + + A +++ + + +
Sbjct: 1 MAQQKKTIAVVGATGRQGASLIRVAAAVGHHVRAQV-HSLK-----GLIAEELQAIPNVT 54
Query: 59 VIQADLTSEEDT 70
+ Q L +
Sbjct: 55 LFQGPLLNNVPL 66
>2x4g_A Nucleoside-diphosphate-sugar epimerase; isomerase; 2.65A
{Pseudomonas aeruginosa}
Length = 342
Score = 39.2 bits (92), Expect = 7e-04
Identities = 32/200 (16%), Positives = 64/200 (32%), Gaps = 49/200 (24%)
Query: 8 ILVTGASSGIGAATALHLAKLDAKLAITGRNVEQLDKVSESCQSVSKNKPLVIQADLTSE 67
V GA+ +G A + G ++ + + S Q ++ +P A++
Sbjct: 16 YAVLGATGLLGHHAARAIRA-------AGHDLVLIHRPSSQIQRLAYLEPECRVAEMLDH 68
Query: 68 EDTKRI---IDTVVKHYQKLNVLVNNAGILEAGSIENTSLEQYDKIMNVNVRSIYHLTML 124
+R +D V+ +AG + ++ + + +
Sbjct: 69 AGLERALRGLDGVI-F---------SAGYY------PSRPRRWQEEVASALGQTNPFYAA 112
Query: 125 AVPHLISTKGNIVNVSSVNGLRSFP----------------GVLAYCVSKAAVDQFTSCT 168
+ + I+ V S + P G +Y + K A+D+
Sbjct: 113 CLQARVP---RILYVGSAYAMPRHPQGLPGHEGLFYDSLPSGKSSYVLCKWALDEQ---- 165
Query: 169 ALELASKGVRVNSVNPGVTL 188
A E A G+ V PG+ L
Sbjct: 166 AREQARNGLPVVIGIPGMVL 185
>2z5l_A Tylkr1, tylactone synthase starter module and modules 1 & 2;
short-chain dehydrogenase/reductase, rossman fold; 1.95A
{Streptomyces fradiae}
Length = 511
Score = 37.9 bits (88), Expect = 0.002
Identities = 24/116 (20%), Positives = 45/116 (38%), Gaps = 8/116 (6%)
Query: 9 LVTGASSGIGAATALHLAKLDAK-LAITGRNVEQLDKVSESCQSVSKN--KPLVIQADLT 65
L+TG IG A LA A+ L +T R + +E + + + + + D+
Sbjct: 263 LITGGMGAIGRRLARRLAAEGAERLVLTSRRGPEAPGAAELAEELRGHGCEVVHAACDVA 322
Query: 66 SEEDTKRIIDTVVKHYQKLNVLVNNAGILEAGSIENTSLEQYDKIMNVNVRSIYHL 121
+ ++ N + + AGIL+ I+ S E ++ + V L
Sbjct: 323 ERDALAALVTAY-----PPNAVFHTAGILDDAVIDTLSPESFETVRGAKVCGAELL 373
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 37.7 bits (87), Expect = 0.003
Identities = 36/212 (16%), Positives = 66/212 (31%), Gaps = 60/212 (28%)
Query: 62 ADLTSEEDTKRI-IDTVVKHYQKLNVLVN-------NAGILEAGSIENTSL--------- 104
A L E DT + ++K+Y ++ N+ + A N L
Sbjct: 106 AKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGN 165
Query: 105 -EQY-DKIMNVNVRSIYHLTMLAVPHLISTKGNIVNV---SSVNGLRSFP-GV-----LA 153
+ Y +++ R +Y + V LI ++ ++++ + F G+ L
Sbjct: 166 TDDYFEEL-----RDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLE 220
Query: 154 YCVSKAAVDQFTSCTALELASKGVRVNSVNPGVTLTNL-H-----KNSGIDQQAYQNFLE 207
+ D S S P + + L H K G
Sbjct: 221 NPSNTPDKDYLLSIPI-----------SC-PLIGVIQLAHYVVTAKLLGFT---PGELRS 265
Query: 208 RSKETHALGRVGNPEEVAKAIAFLASDD-ASF 238
K G G+ + + A+A +D SF
Sbjct: 266 YLK-----GATGHSQGLVTAVAIAETDSWESF 292
Score = 34.6 bits (79), Expect = 0.029
Identities = 58/291 (19%), Positives = 92/291 (31%), Gaps = 107/291 (36%)
Query: 9 LVTGASS--GIGAATALHLAKLDAKLAITGRNVEQLDKVSESCQSVSKNKPLVIQADLTS 66
L++ S IG H + AK + G +L + S+ ++ A +
Sbjct: 231 LLSIPISCPLIGVIQLAHYV-VTAK--LLGFTPGELRSYLKGATGHSQG---LVTAVAIA 284
Query: 67 EEDT----KRIIDTVVK-----------HYQKLNV--------LVNNAGI----LEAGSI 99
E D+ + + Y ++ L NN G+ L SI
Sbjct: 285 ETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPML---SI 341
Query: 100 ENTSLEQYDKIMN-VNVRSIYHLTMLAVPHLISTKGNIVNVSSVNGLRSFPGVLAYCVSK 158
N + EQ +N N HL P G V +S VNG ++ V++
Sbjct: 342 SNLTQEQVQDYVNKTNS----HL-----P-----AGKQVEISLVNGAKNL--VVS----- 380
Query: 159 AAVDQFTSCTALELASKGVRVNSVNPGVTL----TNLHKN---SGIDQQAYQNFLER-SK 210
G P +L L K SG+D Q+ F ER K
Sbjct: 381 -----------------G-------PPQSLYGLNLTLRKAKAPSGLD-QSRIPFSERKLK 415
Query: 211 ETHALGRVGNP------EEVAKAIAF-LASDDASFTTGEHL------TVDG 248
++ V +P + I L ++ SF + + T DG
Sbjct: 416 FSNRFLPVASPFHSHLLVPASDLINKDLVKNNVSF-NAKDIQIPVYDTFDG 465
Score = 27.7 bits (61), Expect = 5.3
Identities = 21/118 (17%), Positives = 43/118 (36%), Gaps = 26/118 (22%)
Query: 9 LVTGASSGIGAATALHLAKLDAK-LAI------TGRNVEQLDK-VSES-CQSVSKNKPLV 59
L+ AS I + +AK + I G ++ L +SE + + P
Sbjct: 431 LLVPASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSDLRVLSGSISERIVDCIIR-LP-- 487
Query: 60 IQADLTSEEDTKRIID----TVVKHYQKLNVLVNN------AGILEAGSIENTSLEQY 107
++ + T++ I+D L VL + ++ AG+++ + Y
Sbjct: 488 VKWETTTQFKATHILDFGPGGA----SGLGVLTHRNKDGTGVRVIVAGTLDINPDDDY 541
>3qp9_A Type I polyketide synthase pikaii; rossmann fold, ketoreductase,
epimerization, oxidoreductase; 1.88A {Streptomyces
venezuelae}
Length = 525
Score = 37.1 bits (86), Expect = 0.004
Identities = 34/170 (20%), Positives = 57/170 (33%), Gaps = 17/170 (10%)
Query: 9 LVTGASSGIGAATALHLAKLDAK-LAITGRNVEQLDKVSESCQSVSKNKP---------- 57
LVTGA A A LA+ A L + S +
Sbjct: 255 LVTGAEEPAAAEAARRLARDGAGHLLLHTTPSGSEGAEGTSGAAEDSGLAGLVAELADLG 314
Query: 58 ---LVIQADLTSEEDTKRIIDTVVKHYQKLNVLVNNAGILEAGSIENTSLEQYDKIMNVN 114
V+ DLT E R++ V + L+ +++ +++ + T + +++
Sbjct: 315 ATATVVTCDLTDAEAAARLLAGVSDAHP-LSAVLHLPPTVDSEPLAATDADALARVVTAK 373
Query: 115 VRSIYHLTMLAVPHLISTKGNIVNV--SSVNGLRSFPGVLAYCVSKAAVD 162
+ HL L + V V SSV + G AY A +D
Sbjct: 374 ATAALHLDRLLREAAAAGGRPPVLVLFSSVAAIWGGAGQGAYAAGTAFLD 423
>3zu3_A Putative reductase YPO4104/Y4119/YP_4011; oxidoreductase, fatty
acid biosynthesis II, short-chain dehydrogenase
reductase superfamily; HET: NAI; 1.80A {Yersinia pestis}
PDB: 3zu4_A* 3zu5_A* 3zu2_A*
Length = 405
Score = 36.6 bits (84), Expect = 0.006
Identities = 21/104 (20%), Positives = 39/104 (37%), Gaps = 20/104 (19%)
Query: 5 GKVILVTGASSGIGAATALHLA---------------KLDAKLAITG-RNVEQLDKVSES 48
K +LV GAS+G G A + A + K +G N K +
Sbjct: 47 PKRVLVIGASTGYGLAARITAAFGCGADTLGVFFERPGEEGKPGTSGWYNSAAFHKFAAQ 106
Query: 49 CQSVSKNKPLVIQADLTSEEDTKRIIDTVVKHYQKLNVLVNNAG 92
+K+ I D S+E + ID + + +++ ++ +
Sbjct: 107 KGLYAKS----INGDAFSDEIKQLTIDAIKQDLGQVDQVIYSLA 146
>3mje_A AMPHB; rossmann fold, oxidoreductase; HET: NDP; 1.36A {Streptomyces
nodosus} PDB: 3mjc_A* 3mjs_A* 3mjv_A* 3mjt_A*
Length = 496
Score = 35.5 bits (82), Expect = 0.015
Identities = 26/117 (22%), Positives = 49/117 (41%), Gaps = 5/117 (4%)
Query: 9 LVTGASSGIGAATALHLAKLDAK-LAITGRNVEQLDKVSESCQSVSKN--KPLVIQADLT 65
LVTG + GIG A LA+ A L +T R +E + + + + D
Sbjct: 243 LVTGGTGGIGGRVARRLAEQGAAHLVLTSRRGADAPGAAELRAELEQLGVRVTIAACDAA 302
Query: 66 SEEDTKRIIDTVVKHYQKLNVLVNNAGIL-EAGSIENTSLEQYDKIMNVNVRSIYHL 121
E ++ + + L + ++AG+ + + + +L Q D +M + + HL
Sbjct: 303 DREALAALLAELPEDAP-LTAVFHSAGVAHDDAPVADLTLGQLDALMRAKLTAARHL 358
>3ajr_A NDP-sugar epimerase; L-threonine dehydrogenase, L-3-
hydroxynorvaline, oxidoreductase; HET: NAD; 1.77A
{Thermoplasma volcanium} PDB: 3a9w_A* 3a4v_A* 3a1n_A*
Length = 317
Score = 34.6 bits (80), Expect = 0.023
Identities = 24/115 (20%), Positives = 47/115 (40%), Gaps = 20/115 (17%)
Query: 7 VILVTGASSGIGAATALHLAKLDAKLAITGRNVEQLDKVSESCQSVSKNKPLVIQADLTS 66
+ILVTG+S IG +LA+ K + ++ Q D I D+++
Sbjct: 1 MILVTGSSGQIGTELVPYLAEKYGKKNVIASDIVQRDT---------GGIKF-ITLDVSN 50
Query: 67 EEDTKRIIDTVVKHYQKLNVLVNNAGILEAGSIENTSLEQYDKIMNVNVRSIYHL 121
++ R ++ ++ + + AGIL A ++ VN+ Y++
Sbjct: 51 RDEIDRAVEK-----YSIDAIFHLAGILSAKGEKD-----PALAYKVNMNGTYNI 95
>1zsy_A Mitochondrial 2-enoyl thioester reductase; medium-chain
dehydrogenase/reductase, oxidoreductase, 2-ENOY
thioester reductase; 1.75A {Homo sapiens} PDB: 2vcy_A
Length = 357
Score = 33.8 bits (78), Expect = 0.045
Identities = 11/48 (22%), Positives = 24/48 (50%), Gaps = 2/48 (4%)
Query: 5 GKVILVTGASSGIGAATALHLAK-LDAKLAITGRNVEQLDKVSESCQS 51
G ++ ++SG+G A + +A L + R+ + K+S+ +S
Sbjct: 168 GDSVIQNASNSGVGQA-VIQIAAALGLRTINVVRDRPDIQKLSDRLKS 214
>4dup_A Quinone oxidoreductase; PSI-biology, structural genomics, protein
structure initiati structural genomics research
consortium, nysgrc; 2.45A {Rhizobium etli}
Length = 353
Score = 33.3 bits (77), Expect = 0.057
Identities = 12/44 (27%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
Query: 5 GKVILVTGASSGIGAATALHLAK-LDAKLAITGRNVEQLDKVSE 47
G+ +L+ G +SGIG A+ LA+ A++ T + + +
Sbjct: 168 GESVLIHGGTSGIGTT-AIQLARAFGAEVYATAGSTGKCEACER 210
>2j8z_A Quinone oxidoreductase; medium-chain dehydrogenase- reductases,
QUIN oxidoreductase, oxidative stress response; HET:
NAP; 2.50A {Homo sapiens} PDB: 2oby_A*
Length = 354
Score = 33.4 bits (77), Expect = 0.061
Identities = 11/44 (25%), Positives = 21/44 (47%), Gaps = 2/44 (4%)
Query: 5 GKVILVTGASSGIGAATALHLAK-LDAKLAITGRNVEQLDKVSE 47
G +L+ SG+G A A+ L + A +T + ++L +
Sbjct: 163 GDYVLIHAGLSGVGTA-AIQLTRMAGAIPLVTAGSQKKLQMAEK 205
>1ff9_A Saccharopine reductase; lysine biosynthesis, alpha-aminoadipate
pathway, dehydrogenase, oxidoreductase; 2.00A
{Magnaporthe grisea} SCOP: c.2.1.3 d.81.1.2 PDB:
1e5l_A* 1e5q_A
Length = 450
Score = 33.4 bits (75), Expect = 0.063
Identities = 15/78 (19%), Positives = 28/78 (35%), Gaps = 9/78 (11%)
Query: 4 TGKVILVTGASSGIGAATALHLAKLDAKLAITGRNVEQLDKVSESCQSVSKNKPLVIQAD 63
K +L+ G+ + T L K+ + R +E K+S Q + I D
Sbjct: 2 ATKSVLMLGSG-FVTRPTLDVLTDSGIKVTVACRTLESAKKLSAGVQHST-----PISLD 55
Query: 64 LTSEEDTKRII---DTVV 78
+ + + D V+
Sbjct: 56 VNDDAALDAEVAKHDLVI 73
>2wm3_A NMRA-like family domain containing protein 1; unknown function;
HET: NAP NFL; 1.85A {Homo sapiens} PDB: 2wmd_A* 2exx_A*
3dxf_A 3e5m_A
Length = 299
Score = 33.1 bits (76), Expect = 0.074
Identities = 12/66 (18%), Positives = 25/66 (37%), Gaps = 8/66 (12%)
Query: 6 KVILVTGASSGIGAATALHLAKLDAK--LAITGRNVEQLDKVSESCQSVSKNKPLVIQAD 63
K+++V G + G + A L + +T RN ++ + + V+Q D
Sbjct: 6 KLVVVFGGTGAQGGSVARTLLEDGTFKVRVVT-RNPR-----KKAAKELRLQGAEVVQGD 59
Query: 64 LTSEED 69
+
Sbjct: 60 QDDQVI 65
>3rft_A Uronate dehydrogenase; apoenzyme, rossmann fold, NAD binding,
oxidoreductase; 1.90A {Agrobacterium tumefaciens} PDB:
3rfv_A* 3rfx_A*
Length = 267
Score = 32.7 bits (75), Expect = 0.083
Identities = 26/121 (21%), Positives = 46/121 (38%), Gaps = 31/121 (25%)
Query: 4 TGKVILVTGASSGIGAATALHLAKLDAKLAITGRNVEQLDKVSESCQSVSKNKPLVIQAD 63
K +LVTGA+ +G LA + L + ++ LD + + +Q D
Sbjct: 2 AMKRLLVTGAAGQLGRVMRERLAPMAEILRLA--DLSPLDPAGPNEE--------CVQCD 51
Query: 64 LTSEEDTKRI---IDTVVKHYQKLNVLVNNAGILEAGSIENTSLEQYDKIMNVNVRSIYH 120
L + D +V H GI S+E +++I+ N+ +Y+
Sbjct: 52 LADANAVNAMVAGCDGIV-HL---------GGI----SVEKP----FEQILQGNIIGLYN 93
Query: 121 L 121
L
Sbjct: 94 L 94
>3i6i_A Putative leucoanthocyanidin reductase 1; rossmann fold, short
chain dehydrogenase reductase, flavonoi oxidoreductase;
HET: NDP; 1.75A {Vitis vinifera} PDB: 3i5m_A 3i52_A*
3i6q_A*
Length = 346
Score = 33.1 bits (75), Expect = 0.084
Identities = 14/83 (16%), Positives = 31/83 (37%), Gaps = 5/83 (6%)
Query: 1 MNFTGKVILVTGASSGIGAATALHLAKLDAKLAITGRNVEQLDKVSESCQSVSKNKPLVI 60
+ +L+ GA+ IG A I R + ++ +++ +++
Sbjct: 6 VPSPKGRVLIAGATGFIGQFVATASLDAHRPTYILARPGPRSPSKAKIFKALEDKGAIIV 65
Query: 61 QADLTSEEDTKRI-----IDTVV 78
+ +E ++I ID VV
Sbjct: 66 YGLINEQEAMEKILKEHEIDIVV 88
>1y1p_A ARII, aldehyde reductase II; rossmann fold, short chain
dehydrogenase reductase, oxidoreductase; HET: NMN AMP;
1.60A {Sporidiobolus salmonicolor} SCOP: c.2.1.2 PDB:
1ujm_A* 1zze_A
Length = 342
Score = 32.6 bits (75), Expect = 0.089
Identities = 12/67 (17%), Positives = 28/67 (41%), Gaps = 5/67 (7%)
Query: 5 GKVILVTGASSGIGAATALHLAKLDAKLAITG--RNVEQLDKVSESCQSVSKNK-PLVIQ 61
G ++LVTGA+ + + L L+ + G R+ +L + + + + +
Sbjct: 11 GSLVLVTGANGFVASHVVEQL--LEHGYKVRGTARSASKLANLQKRWDAKYPGRFETAVV 68
Query: 62 ADLTSEE 68
D+ +
Sbjct: 69 EDMLKQG 75
>2hk9_A Shikimate dehydrogenase; shikimate pathway, drug design,
oxidoreductase; HET: ATR SKM NAP; 2.20A {Aquifex
aeolicus} PDB: 2hk8_A 2hk7_A
Length = 275
Score = 32.1 bits (74), Expect = 0.12
Identities = 17/67 (25%), Positives = 31/67 (46%), Gaps = 7/67 (10%)
Query: 2 NFTGKVILVTGASSGIGAATA--LHLAKLDAKLAITGRNVEQLDKVSE--SCQSVSKNKP 57
K ILV GA GA+ A L K AK+ + R E+ K+++ + V+ +
Sbjct: 126 EVKEKSILVLGAG---GASRAVIYALVKEGAKVFLWNRTKEKAIKLAQKFPLEVVNSPEE 182
Query: 58 LVIQADL 64
++ + +
Sbjct: 183 VIDKVQV 189
>3pi7_A NADH oxidoreductase; groes-like fold, NAD(P)-binding rossmann fold,
structural GE joint center for structural genomics,
JCSG; HET: MSE; 1.71A {Mesorhizobium loti}
Length = 349
Score = 32.2 bits (74), Expect = 0.13
Identities = 10/40 (25%), Positives = 18/40 (45%), Gaps = 2/40 (5%)
Query: 5 GKVILVTGASSGIGAATALHLAK-LDAKLAITGRNVEQLD 43
K ++T +S + + LAK + +T R EQ+
Sbjct: 165 EKAFVMTAGASQLC-KLIIGLAKEEGFRPIVTVRRDEQIA 203
>1iz0_A Quinone oxidoreductase; APO-enzyme, riken structural
genomics/proteomics initiative, RSGI, structural
genomics; 2.30A {Thermus thermophilus} SCOP: b.35.1.2
c.2.1.1 PDB: 1iyz_A 2cf2_D
Length = 302
Score = 32.1 bits (74), Expect = 0.14
Identities = 10/40 (25%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
Query: 5 GKVILVTGASSGIGAATALHLAK-LDAKLAITGRNVEQLD 43
G+ +LV A+ +G A A+ +A+ + ++ E+L
Sbjct: 126 GEKVLVQAAAGALGTA-AVQVARAMGLRVLAAASRPEKLA 164
>3ay3_A NAD-dependent epimerase/dehydratase; glucuronic acid dehydrogeanse,
oxidoreductase; 2.10A {Chromohalobacter salexigens}
Length = 267
Score = 31.9 bits (73), Expect = 0.15
Identities = 22/117 (18%), Positives = 41/117 (35%), Gaps = 31/117 (26%)
Query: 8 ILVTGASSGIGAATALHLAKLDAKLAITGRNVEQLDKVSESCQSVSKNKPLVIQADLTSE 67
+LVTGA+ G+G+ + L V D V ++ ++ DL
Sbjct: 5 LLVTGAAGGVGS----AIRP---HLGTLAHEVRLSDIVD---LGAAEAHEEIVACDLADA 54
Query: 68 EDTKRI---IDTVVKHYQKLNVLVNNAGILEAGSIENTSLEQYDKIMNVNVRSIYHL 121
+ + D ++ H L S+E ++ I+ N+ Y+L
Sbjct: 55 QAVHDLVKDCDGII-H-------------LGGVSVERP----WNDILQANIIGAYNL 93
>2v6g_A Progesterone 5-beta-reductase; tyrosine-dependent oxidoreductase,
oxidoreductase, SDR, cardenolides, cardiac glycosides;
HET: NAP; 2.3A {Digitalis lanata} PDB: 2v6f_A*
Length = 364
Score = 31.6 bits (71), Expect = 0.19
Identities = 8/25 (32%), Positives = 11/25 (44%)
Query: 6 KVILVTGASSGIGAATALHLAKLDA 30
V L+ G + IG + A L D
Sbjct: 2 SVALIVGVTGIIGNSLAEILPLADT 26
>2yy7_A L-threonine dehydrogenase; thermolabIle, flavobacterium FRIG KUC-1,
oxidoreductase; HET: PE8 NAD MES; 2.06A {Flavobacterium
frigidimaris}
Length = 312
Score = 31.5 bits (72), Expect = 0.21
Identities = 26/134 (19%), Positives = 47/134 (35%), Gaps = 24/134 (17%)
Query: 1 MNFTGKVILVTGASSGIGAATALHLAKLDAKLAITGRNVEQLDKVSESCQSVSKNKPLVI 60
MN IL+ GA IG L + G + + V + P
Sbjct: 1 MN---PKILIIGACGQIGTELTQKL------RKLYGTENVIASDIRKLNTDVVNSGP-FE 50
Query: 61 QADLTSEEDTKRIIDTVVKHYQKLNVLVNNAGILEAGSIENTSLEQYDKIMNVNVRSIYH 120
+ D +I V H K+ + A +L A + +N + ++N+ S++H
Sbjct: 51 VVNAL---DFNQIEHLVEVH--KITDIYLMAALLSATAEKNPAFA-----WDLNMNSLFH 100
Query: 121 LTMLA----VPHLI 130
+ LA + +
Sbjct: 101 VLNLAKAKKIKKIF 114
>3ruf_A WBGU; rossmann fold, UDP-hexose 4-epimerase, isomerase; HET: NAD
UDP; 2.00A {Plesiomonas shigelloides} PDB: 3ru9_A*
3rud_A* 3rue_A* 3rua_A* 3ruh_A* 3ruc_A* 3ru7_A* 3lu1_A*
Length = 351
Score = 31.1 bits (71), Expect = 0.31
Identities = 19/86 (22%), Positives = 37/86 (43%), Gaps = 9/86 (10%)
Query: 1 MNFTGKVILVTGASSGIGAATALHLAKLDAKLAI-----TGRNVEQLDKVSESCQSVSKN 55
+ F+ K L+TG + IG+ L KL+ + TG LD+V + +
Sbjct: 21 LIFSPKTWLITGVAGFIGSNLLEKLLKLNQVVIGLDNFSTGHQY-NLDEVKTLVSTEQWS 79
Query: 56 KPLVIQADLTSEEDTKRI---IDTVV 78
+ I+ D+ +++ +D V+
Sbjct: 80 RFCFIEGDIRDLTTCEQVMKGVDHVL 105
>1xq6_A Unknown protein; structural genomics, protein structure
initiative, CESG, AT5G02240, NADP, center for
eukaryotic structural genomics; HET: NAP; 1.80A
{Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1ybm_A*
2q46_A* 2q4b_A*
Length = 253
Score = 31.0 bits (70), Expect = 0.31
Identities = 18/78 (23%), Positives = 27/78 (34%), Gaps = 13/78 (16%)
Query: 6 KVILVTGASSGIGAATALHLAKLDAKLAITG--RNVEQLDKVSESCQSVSKNKPLVIQAD 63
+LVTGAS G L + K G R+ + +K+ V D
Sbjct: 5 PTVLVTGASGRTGQIVYKKLKEGSDKFVAKGLVRSAQGKEKIGGEAD--------VFIGD 56
Query: 64 LTSEEDTKRI---IDTVV 78
+T + ID +V
Sbjct: 57 ITDADSINPAFQGIDALV 74
>2jl1_A Triphenylmethane reductase; oxidoreductase, bioremediation; HET:
NAP GOL; 1.96A {Citrobacter SP} PDB: 2vrb_A* 2vrc_A
2vrc_D
Length = 287
Score = 30.7 bits (70), Expect = 0.38
Identities = 13/42 (30%), Positives = 21/42 (50%), Gaps = 2/42 (4%)
Query: 8 ILVTGASSGIGAATALHLAKLDA--KLAITGRNVEQLDKVSE 47
I VTGA+ +G HL K ++ RNVE+ +++
Sbjct: 3 IAVTGATGQLGGLVIQHLLKKVPASQIIAIVRNVEKASTLAD 44
>2eih_A Alcohol dehydrogenase; zinc ION binding protein, structural
genomics, NPPSFA, natio project on protein structural
and functional analyses; 2.30A {Thermus thermophilus}
Length = 343
Score = 30.6 bits (70), Expect = 0.46
Identities = 13/44 (29%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
Query: 5 GKVILVTGASSGIGAATALHLAK-LDAKLAITGRNVEQLDKVSE 47
G +LV A SG+ A A+ +AK A++ T + ++L +
Sbjct: 167 GDDVLVMAAGSGVSVA-AIQIAKLFGARVIATAGSEDKLRRAKA 209
>3fbt_A Chorismate mutase and shikimate 5-dehydrogenase fusion protein;
structural genomics, oxidoreductase, amino-acid
biosynthesis; 2.10A {Clostridium acetobutylicum}
Length = 282
Score = 30.2 bits (69), Expect = 0.50
Identities = 15/66 (22%), Positives = 31/66 (46%), Gaps = 6/66 (9%)
Query: 2 NFTGKVILVTGASSGIGAATALH--LAKLDAK-LAITGRNVEQLDKVSESCQSVSKNKPL 58
+ +V G+ G GAA A+ L AK + + RN E+ ++ + +S ++
Sbjct: 119 EIKNNICVVLGS--G-GAARAVLQYLKDNFAKDIYVVTRNPEKTSEIYGEFKVISYDELS 175
Query: 59 VIQADL 64
++ D+
Sbjct: 176 NLKGDV 181
>4a0s_A Octenoyl-COA reductase/carboxylase; oxidoreductase, transferase,
cinnabaramide PKS biosynthesis; HET: CO8 NAP; 1.90A
{Streptomyces SP} PDB: 4a10_A
Length = 447
Score = 30.6 bits (69), Expect = 0.53
Identities = 10/44 (22%), Positives = 19/44 (43%), Gaps = 2/44 (4%)
Query: 5 GKVILVTGASSGIGAATALHLAKLD-AKLAITGRNVEQLDKVSE 47
G ++L+ GAS G+G+ A+ K + ++ V
Sbjct: 221 GDIVLIWGASGGLGSY-AIQFVKNGGGIPVAVVSSAQKEAAVRA 263
>1qyd_A Pinoresinol-lariciresinol reductase; NADPH-dependent aromatic
alcohol reductases, pcber, PLR, IFR, lignans,
isoflavonoids, plant protein; 2.50A {Thuja plicata}
SCOP: c.2.1.2
Length = 313
Score = 30.3 bits (68), Expect = 0.54
Identities = 16/84 (19%), Positives = 29/84 (34%), Gaps = 9/84 (10%)
Query: 1 MNFTGKVILVTGASSGIGAATALHLAKLDAKLAITGRNVEQLDKVSESCQSVSKNKPL-- 58
M+ +V L+ G + IG L + R + + Q + K L
Sbjct: 1 MDKKSRV-LIVGGTGYIGKRIVNASISLGHPTYVLFRPEVVSN--IDKVQMLLYFKQLGA 57
Query: 59 -VIQADLTSEEDTKRI---IDTVV 78
+I+A L + +D V+
Sbjct: 58 KLIEASLDDHQRLVDALKQVDVVI 81
>4a27_A Synaptic vesicle membrane protein VAT-1 homolog-L; oxidoreductase;
2.10A {Homo sapiens}
Length = 349
Score = 30.3 bits (69), Expect = 0.57
Identities = 8/44 (18%), Positives = 16/44 (36%), Gaps = 2/44 (4%)
Query: 5 GKVILVTGASSGIGAATALHLAK-LDAKLAITGRNVEQLDKVSE 47
G +LV A G+G A L + + + + + +
Sbjct: 143 GMSVLVHSAGGGVGQA-VAQLCSTVPNVTVFGTASTFKHEAIKD 185
>3dhn_A NAD-dependent epimerase/dehydratase; reductase, PF01370,
Q89Z24_bactn, NESG, BTR310, structural genomics, PSI-2;
2.00A {Bacteroides thetaiotaomicron}
Length = 227
Score = 30.1 bits (68), Expect = 0.59
Identities = 18/78 (23%), Positives = 36/78 (46%), Gaps = 15/78 (19%)
Query: 6 KVILVTGASSGIGAATALHLAKLDAKLAITG--RNVEQLDKVSESCQSVSKNKPLVIQAD 63
K I++ GAS +G+A L+ +T R+ E++ +E + V +AD
Sbjct: 5 KKIVLIGASGFVGSALLNEA--LNRGFEVTAVVRHPEKIKIENEHLK--------VKKAD 54
Query: 64 LTSEEDTKRII---DTVV 78
++S ++ + D V+
Sbjct: 55 VSSLDEVCEVCKGADAVI 72
>2gas_A Isoflavone reductase; NADPH-dependent reductase, oxidoreductase;
1.60A {Medicago sativa}
Length = 307
Score = 30.2 bits (68), Expect = 0.59
Identities = 12/77 (15%), Positives = 24/77 (31%), Gaps = 6/77 (7%)
Query: 8 ILVTGASSGIGAATALHLAKLDAKLAITGRNVEQLDKVSESCQSVSKNKPL---VIQADL 64
IL+ G + IG K R + + + L +++ D+
Sbjct: 5 ILILGPTGAIGRHIVWASIKAGNPTYALVRKTITAANPETKEELIDNYQSLGVILLEGDI 64
Query: 65 TSEEDTKRI---IDTVV 78
E + +D V+
Sbjct: 65 NDHETLVKAIKQVDIVI 81
>4eye_A Probable oxidoreductase; structural genomics, niaid, national
institute of allergy AN infectious diseases; 2.10A
{Mycobacterium abscessus}
Length = 342
Score = 30.3 bits (69), Expect = 0.63
Identities = 14/40 (35%), Positives = 22/40 (55%), Gaps = 2/40 (5%)
Query: 5 GKVILVTGASSGIGAATALHLAK-LDAKLAITGRNVEQLD 43
G+ +LV GA+ GIG A A+ +AK + AK+ +
Sbjct: 160 GETVLVLGAAGGIGTA-AIQIAKGMGAKVIAVVNRTAATE 198
>2uv9_A Fatty acid synthase alpha subunits; fungal, dehydratase, enoyl
reductase, ketoacyl synthase, ketoacyl reductase; 3.1A
{Thermomyces lanuginosus} PDB: 2uvb_A*
Length = 1878
Score = 30.3 bits (68), Expect = 0.68
Identities = 22/80 (27%), Positives = 40/80 (50%), Gaps = 9/80 (11%)
Query: 3 FTGKVILVTGASSG-IGAATALHLAKLDAKLAITGRNVEQLDKVSESCQSV-----SKNK 56
F GK L+TGA +G IGA L AK+ +T + +V+E Q + ++
Sbjct: 650 FQGKHALMTGAGAGSIGAEVLQGLLSGGAKVIVTTSRFSR--QVTEYYQGIYARCGARGS 707
Query: 57 PL-VIQADLTSEEDTKRIID 75
L V+ + S++D + +++
Sbjct: 708 QLVVVPFNQGSKQDVEALVN 727
>1i24_A Sulfolipid biosynthesis protein SQD1; SDR, short-chain
dehydrogenase/reductase, rossmann fold, BIO protein;
HET: NAD UPG; 1.20A {Arabidopsis thaliana} SCOP: c.2.1.2
PDB: 1i2c_A* 1i2b_A* 1qrr_A*
Length = 404
Score = 30.1 bits (68), Expect = 0.70
Identities = 22/95 (23%), Positives = 34/95 (35%), Gaps = 22/95 (23%)
Query: 8 ILVTGASSGIGAATALHLA----------KLDAKLAITGRNVEQLDKVSESCQSVSKNKP 57
++V G G ATALHL+ L +L +E L ++ +S+ K
Sbjct: 14 VMVIGGDGYCGWATALHLSKKNYEVCIVDNLVRRLFDHQLGLESLTPIASIHDRISRWKA 73
Query: 58 LV------IQADLTSEEDTKRI-----IDTVVKHY 81
L D+ E D+VV H+
Sbjct: 74 LTGKSIELYVGDICDFEFLAESFKSFEPDSVV-HF 107
>3dje_A Fructosyl amine: oxygen oxidoreductase; fructosyl-amino acid,
amadoriase, deglycation, fructosamine oxidase; HET: MSE
FAD FSA EPE; 1.60A {Aspergillus fumigatus} PDB: 3djd_A*
Length = 438
Score = 30.2 bits (68), Expect = 0.73
Identities = 11/25 (44%), Positives = 15/25 (60%), Gaps = 3/25 (12%)
Query: 8 ILVTGASSGI-GAATALHLAKLDAK 31
+L+ GA G G +TALHLA+
Sbjct: 9 LLIVGA--GTWGTSTALHLARRGYT 31
>1sb8_A WBPP; epimerase, 4-epimerase, UDP-galnac, UDP-GLCNAC, SDR, G SYK,
UDP, N-acetylglucosamine, N- acetylgalactosamine,
UDP-GLC, isomerase; HET: NAD UD2; 2.10A {Pseudomonas
aeruginosa} SCOP: c.2.1.2 PDB: 1sb9_A*
Length = 352
Score = 29.9 bits (68), Expect = 0.77
Identities = 23/86 (26%), Positives = 35/86 (40%), Gaps = 9/86 (10%)
Query: 1 MNFTGKVILVTGASSGIGAATALHLAKLDAKLAI-----TGRNVEQLDKVSESCQSVSKN 55
+ KV L+TG + IG+ L KLD K+ TG LD+V +
Sbjct: 23 LPAQPKVWLITGVAGFIGSNLLETLLKLDQKVVGLDNFATGHQ-RNLDEVRSLVSEKQWS 81
Query: 56 KPLVIQADLTSEEDTKRI---IDTVV 78
IQ D+ + +D +D V+
Sbjct: 82 NFKFIQGDIRNLDDCNNACAGVDYVL 107
>3krt_A Crotonyl COA reductase; structural genomics, protein structure
initiative, NYSGXRC, PSI-2; 2.19A {Streptomyces
coelicolor} PDB: 3hzz_A
Length = 456
Score = 29.8 bits (67), Expect = 0.85
Identities = 10/44 (22%), Positives = 18/44 (40%), Gaps = 2/44 (4%)
Query: 5 GKVILVTGASSGIGAATALHLAKLD-AKLAITGRNVEQLDKVSE 47
G +L+ GAS G+G+ A A A + ++ +
Sbjct: 229 GDNVLIWGASGGLGSY-ATQFALAGGANPICVVSSPQKAEICRA 271
>3eya_A Pyruvate dehydrogenase [cytochrome]; pyruvate oxidase,
membrane-associated flavoprotein dehydrogenase,
interactions with lipids cell membrane; HET: TDP FAD;
2.50A {Escherichia coli} PDB: 3ey9_A*
Length = 549
Score = 29.8 bits (68), Expect = 0.87
Identities = 11/34 (32%), Positives = 18/34 (52%), Gaps = 6/34 (17%)
Query: 220 NPEEVAKAIAFLASDDASFTTGEHLTVDGGRHAM 253
+P+ +A+ I+ A+DDA FT D G +
Sbjct: 358 HPQYLAQQISHFAADDAIFTC------DVGTPTV 385
>3e48_A Putative nucleoside-diphosphate-sugar epimerase; alpha-beta
protein., structural genomics, PSI-2, protein STR
initiative; 1.60A {Staphylococcus aureus subsp}
Length = 289
Score = 29.6 bits (67), Expect = 0.88
Identities = 10/36 (27%), Positives = 16/36 (44%), Gaps = 1/36 (2%)
Query: 8 ILVTGASSGIGAATALHLAKLDA-KLAITGRNVEQL 42
I++TGA+ +G I RNVE++
Sbjct: 3 IMLTGATGHLGTHITNQAIANHIDHFHIGVRNVEKV 38
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 30.2 bits (67), Expect = 0.89
Identities = 17/92 (18%), Positives = 32/92 (34%), Gaps = 5/92 (5%)
Query: 23 LHLAKLDAKLAITGRNVEQLDKVSESCQSVSKNKPLVIQADLTSEEDTKRIIDTVVKHYQ 82
L L+ K+ + + Q + KP + D E I+D + K +
Sbjct: 498 LDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEE 557
Query: 83 KLNV-----LVNNAGILEAGSIENTSLEQYDK 109
L L+ A + E +I + +Q +
Sbjct: 558 NLICSKYTDLLRIALMAEDEAIFEEAHKQVQR 589
>3iup_A Putative NADPH:quinone oxidoreductase; YP_296108.1, structur
genomics, joint center for structural genomics, JCSG,
prote structure initiative; HET: MSE NDP; 1.70A
{Ralstonia eutropha}
Length = 379
Score = 29.9 bits (67), Expect = 0.89
Identities = 11/39 (28%), Positives = 15/39 (38%)
Query: 5 GKVILVTGASSGIGAATALHLAKLDAKLAITGRNVEQLD 43
++ T A+S +G K KL R EQ D
Sbjct: 172 HSALVHTAAASNLGQMLNQICLKDGIKLVNIVRKQEQAD 210
>2uv8_A Fatty acid synthase subunit alpha (FAS2); fatty acid biosynthesis,
malonyl/palmitoyl transferase, phosphopantetheine,
transferase; HET: GVL FMN; 3.10A {Saccharomyces
cerevisiae} PDB: 2vkz_A* 3hmj_A*
Length = 1887
Score = 29.6 bits (66), Expect = 1.1
Identities = 23/80 (28%), Positives = 41/80 (51%), Gaps = 9/80 (11%)
Query: 3 FTGKVILVTGASSG-IGAATALHLAKLDAKLAITGRNVEQLDKVSESCQSV-----SKNK 56
F K +L+TGA G IGA L + AK+ +T + +V++ QS+ +K
Sbjct: 673 FKDKYVLITGAGKGSIGAEVLQGLLQGGAKVVVTTSRFSK--QVTDYYQSIYAKYGAKGS 730
Query: 57 PL-VIQADLTSEEDTKRIID 75
L V+ + S++D + +I+
Sbjct: 731 TLIVVPFNQGSKQDVEALIE 750
>2zcu_A Uncharacterized oxidoreductase YTFG; alpha-beta sandwich; 1.80A
{Escherichia coli} PDB: 2zcv_A*
Length = 286
Score = 28.8 bits (65), Expect = 1.4
Identities = 9/43 (20%), Positives = 19/43 (44%), Gaps = 2/43 (4%)
Query: 7 VILVTGASSGIGAATALHLAKL--DAKLAITGRNVEQLDKVSE 47
+I +TGA+ +G L K +++ RN + ++
Sbjct: 1 MIAITGATGQLGHYVIESLMKTVPASQIVAIVRNPAKAQALAA 43
>1yb5_A Quinone oxidoreductase; medium-chain dehydrogenase/reductase,
quinon reduction, structural genomics, structural
genomics consort; HET: NAP; 1.85A {Homo sapiens} SCOP:
b.35.1.2 c.2.1.1
Length = 351
Score = 29.1 bits (66), Expect = 1.4
Identities = 15/44 (34%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
Query: 5 GKVILVTGASSGIGAATALHLAK-LDAKLAITGRNVEQLDKVSE 47
G+ +LV GAS G+G A A +A+ K+ T E V +
Sbjct: 171 GESVLVHGASGGVGLA-ACQIARAYGLKILGTAGTEEGQKIVLQ 213
>1z45_A GAL10 bifunctional protein; epimerase, mutarotase, metabolism,
isomerase; HET: GAL NAD GUD; 1.85A {Saccharomyces
cerevisiae} SCOP: b.30.5.4 c.2.1.2
Length = 699
Score = 28.9 bits (65), Expect = 1.6
Identities = 20/87 (22%), Positives = 38/87 (43%), Gaps = 19/87 (21%)
Query: 4 TGKVILVTGASSGIGAATALHLAKLDAKLAITGRNVEQLDKVSESCQSV-------SKNK 56
T K++LVTG + IG+ T + L ++ G + D +S S +K+
Sbjct: 10 TSKIVLVTGGAGYIGSHTVVEL--IEN-----GYDCVVADNLSNSTYDSVARLEVLTKHH 62
Query: 57 PLVIQADLTSEEDTKRI-----IDTVV 78
+ DL + +++ ID+V+
Sbjct: 63 IPFYEVDLCDRKGLEKVFKEYKIDSVI 89
>1orr_A CDP-tyvelose-2-epimerase; rossmann fold, short-chain
dehydrogenase/reductase, isomeras; HET: NAD CDP; 1.50A
{Salmonella typhi} SCOP: c.2.1.2
Length = 347
Score = 28.7 bits (65), Expect = 1.8
Identities = 13/84 (15%), Positives = 29/84 (34%), Gaps = 18/84 (21%)
Query: 6 KVILVTGASSGIGAATALHLAKLDAKLAITGRNVEQLDKVS-----ESCQSVSKNKPLV- 59
+L+TG +G+ A G ++ D +S ++ +S
Sbjct: 2 AKLLITGGCGFLGSNLASFALS-------QGIDLIVFDNLSRKGATDNLHWLSSLGNFEF 54
Query: 60 IQADLTSEEDTKRI-----IDTVV 78
+ D+ ++ D R+ D+
Sbjct: 55 VHGDIRNKNDVTRLITKYMPDSCF 78
>3nzo_A UDP-N-acetylglucosamine 4,6-dehydratase; structural genomics,
PSI-2, protein structure initiative, MI center for
structural genomics, MCSG, NAD; HET: MSE NAD; 2.10A
{Vibrio fischeri} PDB: 3pvz_A*
Length = 399
Score = 28.9 bits (65), Expect = 1.9
Identities = 7/30 (23%), Positives = 12/30 (40%)
Query: 2 NFTGKVILVTGASSGIGAATALHLAKLDAK 31
+ LV G + IG A + K + +
Sbjct: 32 VVSQSRFLVLGGAGSIGQAVTKEIFKRNPQ 61
>3vlv_A ALGQ1; sugar binding protein, alginate; HET: MAW LGU; 1.50A
{Sphingomonas SP} PDB: 3vlu_A* 3vlw_A* 1y3n_A* 1y3p_A*
1y3q_A 1j1n_A* 1kwh_A
Length = 502
Score = 28.7 bits (64), Expect = 1.9
Identities = 7/37 (18%), Positives = 10/37 (27%), Gaps = 5/37 (13%)
Query: 220 NPEEVAKAIAFLASDDASFTT-----GEHLTVDGGRH 251
NP E K F + G + G+
Sbjct: 325 NPVETIKLFDFYFGPKGRELSNFGVPGLTYDIKNGKP 361
>2c0c_A Zinc binding alcohol dehydrogenase, domain containing 2;
oxidoreductase, quinone oxidoreductase, medium-chain
dehydrogenase/reductase; HET: NAP; 1.45A {Homo sapiens}
PDB: 2x1h_A* 2x7h_A* 2wek_A*
Length = 362
Score = 28.8 bits (65), Expect = 1.9
Identities = 11/24 (45%), Positives = 15/24 (62%), Gaps = 1/24 (4%)
Query: 5 GKVILVTGASSGIGAATALHLAKL 28
GK +LVT A+ G G A+ L+K
Sbjct: 164 GKKVLVTAAAGGTG-QFAMQLSKK 186
>1ryi_A Glycine oxidase; flavoprotein, protein-inhibitor complex,
oxidoreductase; HET: FAD; 1.80A {Bacillus subtilis}
SCOP: c.3.1.2 d.16.1.3 PDB: 3if9_A* 1ng4_A* 1ng3_A*
Length = 382
Score = 28.3 bits (64), Expect = 2.2
Identities = 10/37 (27%), Positives = 15/37 (40%), Gaps = 8/37 (21%)
Query: 8 ILVTGASSGIGAATALHLAKLDAKLAITGRNVEQLDK 44
+V G IG+A A +LAK +N +
Sbjct: 20 AVVIGGG-IIGSAIAYYLAKE-------NKNTALFES 48
>2c29_D Dihydroflavonol 4-reductase; flavonoids, short dehydrogenase
reductase, NADPH, dihydroquercetin, rossmann fold,
oxidoreductase; HET: NAP DQH; 1.81A {Vitis vinifera}
PDB: 2iod_A* 2nnl_D* 3bxx_A* 3c1t_A*
Length = 337
Score = 28.4 bits (64), Expect = 2.2
Identities = 17/73 (23%), Positives = 25/73 (34%), Gaps = 9/73 (12%)
Query: 1 MNFTGKVILVTGASSGIGAATALHLAK--LDAKLAITG--RNVEQLDKVSESCQSVSKNK 56
M + + VTGAS I L L+ + R+ + KV
Sbjct: 1 MGSQSETVCVTGASGFI----GSWLVMRLLERGYTVRATVRDPTNVKKVKHLLDLPKAET 56
Query: 57 PL-VIQADLTSEE 68
L + +ADL E
Sbjct: 57 HLTLWKADLADEG 69
>2rh8_A Anthocyanidin reductase; flavonoids, rossmann fold, short chain
dehydrogenase/reductase, oxidoreductase; 2.22A {Vitis
vinifera} PDB: 3hfs_A
Length = 338
Score = 28.4 bits (64), Expect = 2.3
Identities = 18/69 (26%), Positives = 26/69 (37%), Gaps = 8/69 (11%)
Query: 4 TGKVILVTGASSGIGAATALHLAK--LDAKLAI--TGRNVEQLDKVSESCQSVSKNKPLV 59
K V G + + A L K L A+ T R+ + KVS + +
Sbjct: 8 GKKTACVVGGTGFV----ASLLVKLLLQKGYAVNTTVRDPDNQKKVSHLLELQELGDLKI 63
Query: 60 IQADLTSEE 68
+ADLT E
Sbjct: 64 FRADLTDEL 72
>2uzz_A N-methyl-L-tryptophan oxidase; N-methyltryptophan oxidase (MTOX),
oxidative demethylation of N-methyl-L-tryptophan, FAD,
flavoenzyme; HET: FAD; 3.2A {Escherichia coli}
Length = 372
Score = 28.5 bits (64), Expect = 2.3
Identities = 9/38 (23%), Positives = 15/38 (39%), Gaps = 10/38 (26%)
Query: 8 ILVTGASSGI-GAATALHLAKLDAKLAITGRNVEQLDK 44
+++ G+ G GAA + + G NV D
Sbjct: 5 LIIIGS--GSVGAAAGYYATRA-------GLNVLMTDA 33
>2r6j_A Eugenol synthase 1; phenylpropene, PIP reductase, short-chain
dehydrogenase/reductase, plant protein; HET: NDP; 1.50A
{Ocimum basilicum} PDB: 2qys_A 2qx7_A* 2qzz_A* 2r2g_A*
3c3x_A* 2qw8_A*
Length = 318
Score = 28.3 bits (63), Expect = 2.4
Identities = 14/77 (18%), Positives = 27/77 (35%), Gaps = 12/77 (15%)
Query: 8 ILVTGASSGIGAATALHLAKLDAKLAITGRNVEQLDKVSESCQSVSKNKPL---VIQADL 64
IL+ G + IG KL + R S + + + L +++ +L
Sbjct: 14 ILIFGGTGYIGNHMVKGSLKLGHPTYVFTR------PNSSKTTLLDEFQSLGAIIVKGEL 67
Query: 65 TSEEDTKRI---IDTVV 78
E + +D V+
Sbjct: 68 DEHEKLVELMKKVDVVI 84
>1ek6_A UDP-galactose 4-epimerase; short-chain dehydrogenase,
galactosemia, isomerase; HET: NAI UPG; 1.50A {Homo
sapiens} SCOP: c.2.1.2 PDB: 1ek5_A* 1hzj_A* 1i3k_A*
1i3l_A* 1i3m_A* 1i3n_A*
Length = 348
Score = 28.2 bits (64), Expect = 2.4
Identities = 14/85 (16%), Positives = 29/85 (34%), Gaps = 11/85 (12%)
Query: 5 GKVILVTGASSGIGAATALHLAKLDAKLAI--TGRNVEQLDKVSESC----QSVSKNKPL 58
+ +LVTG + IG+ T L L + + N + Q ++
Sbjct: 2 AEKVLVTGGAGYIGSHTVLELLEAGYLPVVIDNFHNAFRGGGSLPESLRRVQELTGRSVE 61
Query: 59 VIQADLTSEEDTKRI-----IDTVV 78
+ D+ + +R+ V+
Sbjct: 62 FEEMDILDQGALQRLFKKYSFMAVI 86
>3gms_A Putative NADPH:quinone reductase; structural genomics, putative
quinone oxidoreductase, unknown function, PSI-2; 1.76A
{Bacillus thuringiensis}
Length = 340
Score = 27.9 bits (63), Expect = 2.9
Identities = 11/40 (27%), Positives = 18/40 (45%), Gaps = 2/40 (5%)
Query: 5 GKVILVTGASSGIGAATALHLAK-LDAKLAITGRNVEQLD 43
V+LV S IG L++ L+ +L RN + +
Sbjct: 145 NDVLLVNACGSAIGHL-FAQLSQILNFRLIAVTRNNKHTE 183
>1qyc_A Phenylcoumaran benzylic ether reductase PT1; NADPH-dependent
aromatic alcohol reductases, pcber, PLR, IFR, lignans,
isoflavonoids, plant protein; 2.20A {Pinus taeda} SCOP:
c.2.1.2
Length = 308
Score = 27.9 bits (62), Expect = 2.9
Identities = 14/83 (16%), Positives = 25/83 (30%), Gaps = 19/83 (22%)
Query: 8 ILVTGASSGIGAATALHLAKLDAKLAITGRNVEQLDKVSESCQSVSKNKPL--------- 58
IL+ GA+ IG A G L + S + + K + L
Sbjct: 7 ILLIGATGYIGRHVAKASLD-------LGHPTFLLVRESTASSNSEKAQLLESFKASGAN 59
Query: 59 VIQADLTSEEDTKRI---IDTVV 78
++ + +D V+
Sbjct: 60 IVHGSIDDHASLVEAVKNVDVVI 82
>2e7k_A Maguk P55 subfamily member 2; PDZ domain, MPP2 protein, discs large
homolog 2, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 91
Score = 26.6 bits (59), Expect = 3.1
Identities = 11/48 (22%), Positives = 18/48 (37%), Gaps = 1/48 (2%)
Query: 91 AGILEAGSIENTSLEQY-DKIMNVNVRSIYHLTMLAVPHLISTKGNIV 137
A IL G + L D I VN + + L + G+++
Sbjct: 34 ARILHGGMVAQQGLLHVGDIIKEVNGQPVGSDPRALQELLRNASGSVI 81
>3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics,
APC7755, NADP, P protein structure initiative; HET: MSE
NAP; 2.10A {Bacillus halodurans}
Length = 236
Score = 27.7 bits (62), Expect = 3.4
Identities = 29/172 (16%), Positives = 52/172 (30%), Gaps = 39/172 (22%)
Query: 1 MNFTGKVILVTGASSGIGAATALHLAKLDAKLAITGRNVEQLDKVSESCQSVSKNKPLVI 60
+ F G +LV GA+ + L + RN EQ ++ E S ++
Sbjct: 17 LYFQGMRVLVVGANGKVARYLLSELKNKGHEPVAMVRNEEQGPELRERGASD------IV 70
Query: 61 QADLTSEEDTKRIIDTVVKHYQKLNVLVNNAGILEAGSIENTSLEQYDKIMNVNVRSIYH 120
A+L + + ++ +V AG + T D +
Sbjct: 71 VANLE---------EDFSHAFASIDAVVFAAGSGPHTGADKT--ILIDLWGAIKT----- 114
Query: 121 LTMLA-----VPHLISTKGNIVNVSSVNGLRSFPGVL---AYCVSKAAVDQF 164
+ + + VSSV + G + Y V+K D
Sbjct: 115 --IQEAEKRGIKR-------FIMVSSVGTVDPDQGPMNMRHYLVAKRLADDE 157
>3r6d_A NAD-dependent epimerase/dehydratase; structural genomics,
PSI-biology, midwest center for structu genomics, MCSG,
veillo parvula; HET: MLZ; 1.25A {Veillonella parvula
dsm 2008} PDB: 3r14_A*
Length = 221
Score = 27.7 bits (61), Expect = 3.6
Identities = 11/75 (14%), Positives = 26/75 (34%), Gaps = 8/75 (10%)
Query: 8 ILVTGASSGIGAATALHL-AKLDAKLAITGRNVEQLDKVSESCQSVSKNKPLVIQADLTS 66
I + GA+ I L D + + GR ++ + + + VI+ +
Sbjct: 8 ITILGAAGQIAQXLTATLLTYTDMHITLYGRQLKTRIPP----EIIDHERVTVIEGSFQN 63
Query: 67 EEDTKRII---DTVV 78
++ + + V
Sbjct: 64 PGXLEQAVTNAEVVF 78
>3enk_A UDP-glucose 4-epimerase; seattle structural genomics center for
infectious disease, ssgcid, isomerase, NAD; HET: NAD
GUD; 1.90A {Burkholderia pseudomallei 1710B}
Length = 341
Score = 27.8 bits (63), Expect = 3.6
Identities = 21/83 (25%), Positives = 32/83 (38%), Gaps = 19/83 (22%)
Query: 8 ILVTGASSGIGAATALHLAKLDAKLAITGRNVEQLDKVSESCQSV-------SKNKPLVI 60
ILVTG + IG+ TA+ L L G +V D + S + + P
Sbjct: 8 ILVTGGAGYIGSHTAVEL--LAH-----GYDVVIADNLVNSKREAIARIEKITGKTPAFH 60
Query: 61 QADLTSEEDTKRI-----IDTVV 78
+ D++ E RI I +
Sbjct: 61 ETDVSDERALARIFDAHPITAAI 83
>1y56_B Sarcosine oxidase; dehydrogenase, protein-protein complex,
oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus
horikoshii}
Length = 382
Score = 27.5 bits (62), Expect = 4.1
Identities = 7/24 (29%), Positives = 8/24 (33%), Gaps = 7/24 (29%)
Query: 16 GIGAATALHLAKLDAKLAITGRNV 39
+G A LAK G V
Sbjct: 15 IVGVTIAHELAKR-------GEEV 31
>2oln_A NIKD protein; flavoprotein, rossmann fold, oxidoreductase; HET:
FAD; 1.15A {Streptomyces tendae} PDB: 2olo_A* 3hzl_A*
2q6u_A*
Length = 397
Score = 27.4 bits (61), Expect = 4.6
Identities = 11/38 (28%), Positives = 17/38 (44%), Gaps = 10/38 (26%)
Query: 8 ILVTGASSGI-GAATALHLAKLDAKLAITGRNVEQLDK 44
++V G G G ATA +A+ G V L++
Sbjct: 7 VVVVGG--GPVGLATAWQVAER-------GHRVLVLER 35
>1t57_A Conserved protein MTH1675; structural genomics, FMN; HET: FMN;
2.30A {Methanothermobacter
thermautotrophicusorganism_taxid} SCOP: c.49.1.2
Length = 206
Score = 27.2 bits (60), Expect = 4.7
Identities = 25/121 (20%), Positives = 38/121 (31%), Gaps = 22/121 (18%)
Query: 133 KGNIVNVSSVNGLRSFPGVLAYCVSKAAVDQFTSCTALELASKGVRVNSVNPGVTLTNLH 192
+GNIV+V+ G R + + L +GV V H
Sbjct: 73 EGNIVSVTHHAGFR-----------EKGQLELEDEARDALLERGVNV--------YAGSH 113
Query: 193 KNSGIDQQAYQNFLERSKET---HALGRVGNPEEVAKAIAFLASDDASFTTGEHLTVDGG 249
SG+ + F + L V +V IA +A+D E + GG
Sbjct: 114 ALSGVGRGISNRFGGVTPVEIMAETLRMVSQGFKVCVEIAIMAADAGLIPVDEEVIAIGG 173
Query: 250 R 250
Sbjct: 174 T 174
>3qvo_A NMRA family protein; structural genomics, PSI-biology, midwest
center for structu genomics, MCSG, unknown function;
HET: MNB; 2.30A {Shigella flexneri 2A}
Length = 236
Score = 27.1 bits (60), Expect = 4.8
Identities = 15/75 (20%), Positives = 26/75 (34%), Gaps = 11/75 (14%)
Query: 8 ILVTGASSGIGAATALHLA-KLDAKLAITGRNVEQLDKVSESCQSVSKNKPLVIQADLTS 66
+L+ GA I LA K K + R ++ K + +I D+ +
Sbjct: 26 VLILGAGGQIARHVINQLADKQTIKQTLFARQPAKIHKPYP--TNSQ-----IIMGDVLN 78
Query: 67 EEDTKRII---DTVV 78
K+ + D V
Sbjct: 79 HAALKQAMQGQDIVY 93
>3c1o_A Eugenol synthase; phenylpropene, PIP reductase, short-chain
dehydrogenase/reductase, oxidoreductase; HET: NAP;
1.80A {Clarkia breweri}
Length = 321
Score = 27.2 bits (60), Expect = 4.9
Identities = 13/79 (16%), Positives = 27/79 (34%), Gaps = 7/79 (8%)
Query: 6 KVILVTGASSGIGAATALHLAKLDAKLAITGRNVEQLDKVSESCQSVSKNKPL---VIQA 62
+ I++ G + IG I R D S Q + + + +I+
Sbjct: 5 EKIIIYGGTGYIGKFMVRASLSFSHPTFIYARP-LTPDSTPSSVQLREEFRSMGVTIIEG 63
Query: 63 DLTSEEDTKRI---IDTVV 78
++ E + +D V+
Sbjct: 64 EMEEHEKMVSVLKQVDIVI 82
>3sxp_A ADP-L-glycero-D-mannoheptose-6-epimerase; rossman fold, NAD
binding, isomerase; HET: NAD; 2.55A {Helicobacter
pylori}
Length = 362
Score = 27.3 bits (61), Expect = 4.9
Identities = 20/131 (15%), Positives = 45/131 (34%), Gaps = 22/131 (16%)
Query: 2 NFTGKVILVTGASSGIGAATALHLAKLDAKLAITG--------RNVEQLDKVSESCQSVS 53
+ IL+TG + +G+ A H + K + +++
Sbjct: 7 ELENQTILITGGAGFVGSNLAFHFQENHPKAKVVVLDKFRSNTLFSNNRPSSLGHFKNLI 66
Query: 54 KNKPLVIQADLTSEEDTKRIIDTVVKHYQKLNVLVNNAGILEAGSIENTSLEQYDKIMNV 113
K VI AD+ + D +R+ + + ++ +T++ + +M
Sbjct: 67 GFKGEVIAADINNPLDLRRLEKLHFDY------------LFHQAAVSDTTMLNQELVMKT 114
Query: 114 NVRSIYHLTML 124
N + L +L
Sbjct: 115 NYQ--AFLNLL 123
>3omb_A Extracellular solute-binding protein, family 1; PSI-2, midwest
center for structural genomics, protein struc
initiative, MCSG; 2.10A {Bifidobacterium longum subsp}
Length = 535
Score = 27.6 bits (61), Expect = 5.1
Identities = 8/35 (22%), Positives = 12/35 (34%), Gaps = 5/35 (14%)
Query: 220 NPEEVAKAIAFLASDDASFTT-----GEHLTVDGG 249
N + K L S+ S G+ +T G
Sbjct: 362 NKDAALKLANLLYSEKYSVQQFLGSFGKAITKTGE 396
>1udb_A Epimerase, UDP-galactose-4-epimerase; isomerase; HET: NAD UFG;
1.65A {Escherichia coli} SCOP: c.2.1.2 PDB: 1lrj_A*
1nai_A* 1uda_A* 1nah_A* 1xel_A* 1kvq_A* 1kvs_A* 1udc_A*
2udp_A* 1a9z_A* 1kvt_A* 1kvr_A* 1lrk_A* 1lrl_A* 1kvu_A*
1a9y_A*
Length = 338
Score = 27.4 bits (62), Expect = 5.1
Identities = 25/83 (30%), Positives = 36/83 (43%), Gaps = 19/83 (22%)
Query: 8 ILVTGASSGIGAATALHLAKLDAKLAITGRNVEQLDKVSESCQSV-------SKNKPLVI 60
+LVTG S IG+ T + L L G +V LD + S +SV P +
Sbjct: 3 VLVTGGSGYIGSHTCVQL--LQN-----GHDVIILDNLCNSKRSVLPVIERLGGKHPTFV 55
Query: 61 QADLTSEEDTKRI-----IDTVV 78
+ D+ +E I IDTV+
Sbjct: 56 EGDIRNEALMTEILHDHAIDTVI 78
>3cio_A ETK, tyrosine-protein kinase ETK; WZC, escherichia coli tyrosine
kinase domain, signaling protein, transferase, inner
membrane, membrane; 2.50A {Escherichia coli}
Length = 299
Score = 27.3 bits (61), Expect = 5.3
Identities = 9/35 (25%), Positives = 18/35 (51%), Gaps = 4/35 (11%)
Query: 6 KVILVTGASSGIGAAT-ALHLAKLDAKLAITGRNV 39
++++TGA+ G + LA A +A + + V
Sbjct: 105 NILMITGATPDSGKTFVSSTLA---AVIAQSDQKV 136
>3gqv_A Enoyl reductase; medium-chain reductase (MDR superfamily), rossmann
fold, NAD binding, oxidoreductase; HET: NAP; 1.74A
{Aspergillus terreus} PDB: 3b6z_A* 3b70_A*
Length = 371
Score = 27.4 bits (61), Expect = 5.3
Identities = 5/25 (20%), Positives = 10/25 (40%), Gaps = 1/25 (4%)
Query: 4 TGKVILVTGASSGIGAATALHLAKL 28
+LV G S+ + + +L
Sbjct: 164 KPVYVLVYGGSTATATV-TMQMLRL 187
>1gu7_A Enoyl-[acyl-carrier-protein] reductase [NADPH, B-specific]
1,mitochondrial; oxidoreductase, thioester reduction,
fatty acids; 1.70A {Candida tropicalis} SCOP: b.35.1.2
c.2.1.1 PDB: 1guf_A* 1n9g_B* 1n9g_A* 1gyr_A 1h0k_A
Length = 364
Score = 27.3 bits (61), Expect = 5.6
Identities = 11/46 (23%), Positives = 19/46 (41%), Gaps = 2/46 (4%)
Query: 7 VILVTGASSGIGAATALHLAK-LDAKLAITGRNVEQLDKVSESCQS 51
+ G +S +G A + K L+ R+ LD+V S +
Sbjct: 170 WFIQNGGTSAVGKY-ASQIGKLLNFNSISVIRDRPNLDEVVASLKE 214
>3gaz_A Alcohol dehydrogenase superfamily protein; oxidoreductase, PSI-II,
alcohol dehydrogenase superf structural genomics; 1.96A
{Novosphingobium aromaticivorans}
Length = 343
Score = 26.8 bits (60), Expect = 6.9
Identities = 10/34 (29%), Positives = 18/34 (52%), Gaps = 2/34 (5%)
Query: 5 GKVILVTGASSGIGAATALHLAK-LDAKLAITGR 37
G+ +L+ G G+G A+ +A A++ T R
Sbjct: 151 GQTVLIQGGGGGVG-HVAIQIALARGARVFATAR 183
>3la6_A Tyrosine-protein kinase WZC; P-loop protein, nucleotide binding
domain, walker A motif, B protein kinase,
oligomerization; HET: ADP; 3.20A {Escherichia coli}
Length = 286
Score = 26.9 bits (60), Expect = 7.1
Identities = 11/35 (31%), Positives = 18/35 (51%), Gaps = 4/35 (11%)
Query: 6 KVILVTGASSGIGAAT-ALHLAKLDAKLAITGRNV 39
V+++TG S IG +LA A ++ T + V
Sbjct: 93 NVLMMTGVSPSIGMTFVCANLA---AVISQTNKRV 124
>3bfv_A CAPA1, CAPB2, membrane protein CAPA1, protein tyrosine kinase;
chimerical protein, P-loop protein, capsule
biogenesis/degradation; HET: ADP; 1.80A {Staphylococcus
aureus} PDB: 2ved_A*
Length = 271
Score = 26.4 bits (59), Expect = 7.9
Identities = 9/35 (25%), Positives = 15/35 (42%), Gaps = 4/35 (11%)
Query: 6 KVILVTGASSGIG-AATALHLAKLDAKLAITGRNV 39
+ I++T + G G + A +LA A G
Sbjct: 83 QSIVITSEAPGAGKSTIAANLA---VAYAQAGYKT 114
>1u02_A Trehalose-6-phosphate phosphatase related protein; structural
genomics, PSI; 1.92A {Thermoplasma acidophilum} SCOP:
c.108.1.15
Length = 239
Score = 26.6 bits (59), Expect = 9.1
Identities = 8/25 (32%), Positives = 12/25 (48%)
Query: 209 SKETHALGRVGNPEEVAKAIAFLAS 233
ETHA V + E+ K + F+
Sbjct: 200 EGETHAKFHVADYIEMRKILKFIEM 224
>1v5e_A Pyruvate oxidase; oxidoreductase, flavoprotein; HET: FAD; 1.60A
{Aerococcus viridans} SCOP: c.31.1.3 c.36.1.5 c.36.1.9
PDB: 2dji_A* 1v5f_A* 1v5g_A*
Length = 590
Score = 26.8 bits (60), Expect = 9.1
Identities = 8/34 (23%), Positives = 12/34 (35%), Gaps = 6/34 (17%)
Query: 220 NPEEVAKAIAFLASDDASFTTGEHLTVDGGRHAM 253
+V AI A +DA ++ D G
Sbjct: 365 QFYQVYNAINNHADEDAIYSI------DVGNSTQ 392
>2gf3_A MSOX, monomeric sarcosine oxidase; flavoprotein oxidase,
inhibitor 2-furoic acid, oxidoreductas; HET: FAD; 1.30A
{Bacillus SP} SCOP: c.3.1.2 d.16.1.3 PDB: 1el7_A*
1el8_A* 1el9_A* 1eli_A* 1l9e_A* 2a89_A* 2gb0_A* 1el5_A*
3qse_A* 3qsm_A* 3qss_A* 3bhk_A* 3bhf_A* 3m12_A* 3m13_A*
3m0o_A* 1l9c_A* 1l9d_A* 1zov_A*
Length = 389
Score = 26.5 bits (59), Expect = 9.1
Identities = 9/22 (40%), Positives = 11/22 (50%), Gaps = 3/22 (13%)
Query: 8 ILVTGASSGI-GAATALHLAKL 28
++V GA G G A LAK
Sbjct: 6 VIVVGA--GSMGMAAGYQLAKQ 25
>2gag_B Heterotetrameric sarcosine oxidase beta-subunit; flavoenzyme,
electron transfer, folate-ME enzyme, oxidoreductase;
HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia}
PDB: 2gah_B* 1x31_B* 1vrq_B* 3ad7_B* 3ad8_B* 3ad9_B*
3ada_B*
Length = 405
Score = 26.4 bits (59), Expect = 9.3
Identities = 8/12 (66%), Positives = 8/12 (66%)
Query: 16 GIGAATALHLAK 27
G G ATA LAK
Sbjct: 31 GHGLATAYFLAK 42
>1b8p_A Protein (malate dehydrogenase); oxidoreductase; 1.90A
{Aquaspirillum arcticum} SCOP: c.2.1.5 d.162.1.1 PDB:
1b8u_A* 1b8v_A* 3d5t_A
Length = 329
Score = 26.5 bits (59), Expect = 9.5
Identities = 8/26 (30%), Positives = 12/26 (46%)
Query: 1 MNFTGKVILVTGASSGIGAATALHLA 26
M T + VTGA+ I + +A
Sbjct: 1 MAKTPMRVAVTGAAGQICYSLLFRIA 26
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.314 0.129 0.356
Gapped
Lambda K H
0.267 0.0850 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,665,999
Number of extensions: 213451
Number of successful extensions: 1912
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1149
Number of HSP's successfully gapped: 331
Length of query: 256
Length of database: 6,701,793
Length adjustment: 91
Effective length of query: 165
Effective length of database: 4,160,982
Effective search space: 686562030
Effective search space used: 686562030
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 56 (25.1 bits)