RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy15125
(296 letters)
>1spx_A Short-chain reductase family member (5L265); parallel beta-sheet of
seven strands in the order 3214567; 2.10A
{Caenorhabditis elegans} SCOP: c.2.1.2
Length = 278
Score = 277 bits (710), Expect = 2e-93
Identities = 89/313 (28%), Positives = 142/313 (45%), Gaps = 66/313 (21%)
Query: 1 MN-FTGKVILVTGASSGIGAATALHLAKLDAKLAITGRNVEQLNKVSESCQS--VSKNKP 57
M F KV ++TG+S+GIG ATA+ A+ AK+ ITGR+ E+L + + + VS+
Sbjct: 1 MTRFAEKVAIITGSSNGIGRATAVLFAREGAKVTITGRHAERLEETRQQILAAGVSEQNV 60
Query: 58 LVIQADLTSEEDTKRIIDTVVKHYQKLNVLVNNAVTGASSGIGAATALHLAKLDAKLAIT 117
+ AD+T++ I+ T + + KL++LVNNA G +
Sbjct: 61 NSVVADVTTDAGQDEILSTTLGKFGKLDILVNNA------GAAIPDSQSKTGTA------ 108
Query: 118 GRNVEQLNKVSESCQSVSKNKPLVIQADLTSEEDTKRIIDT-----------VVKHYQKL 166
S E ++ V H
Sbjct: 109 -----------------------------QSIESYDATLNLNLRSVIALTKKAVPH---- 135
Query: 167 NVLVNNAGNIVNVSSV-NGLRSFPGVLAYCVSKAAVDQFTSCTALELASKGVRVNSVNPG 225
L + G IVN+SS+ +GL + P Y ++KAA+DQ+T TA++L G+RVNS++PG
Sbjct: 136 --LSSTKGEIVNISSIASGLHATPDFPYYSIAKAAIDQYTRNTAIDLIQHGIRVNSISPG 193
Query: 226 VTLTNLHKNSGIDQQAYQNF---LERSKETHALGRVGNPEEVAKAIAFLASDD-ASFTTG 281
+ T G+ ++ + F + KE G +G P+++A+ IAFLA +S+ G
Sbjct: 194 LVATGFGSAMGMPEETSKKFYSTMATMKECVPAGVMGQPQDIAEVIAFLADRKTSSYIIG 253
Query: 282 EHLTVDGGRHAMC 294
L VDGG +
Sbjct: 254 HQLVVDGGSSLIM 266
>1xkq_A Short-chain reductase family member (5D234); parrallel beta-sheet
of seven strands in the order 3214567; HET: NDP; 2.10A
{Caenorhabditis elegans} SCOP: c.2.1.2
Length = 280
Score = 275 bits (706), Expect = 6e-93
Identities = 95/300 (31%), Positives = 150/300 (50%), Gaps = 43/300 (14%)
Query: 2 NFTGKVILVTGASSGIGAATALHLAKLDAKLAITGRNVEQLNKVSESCQS--VSKNKPLV 59
F+ K +++TG+S+GIG TA+ A+ A + ITGR+ E+L + + VS+ +
Sbjct: 3 RFSNKTVIITGSSNGIGRTTAILFAQEGANVTITGRSSERLEETRQIILKSGVSEKQVNS 62
Query: 60 IQADLTSEEDTKRIIDTVVKHYQKLNVLVNNAVTGASSGIGAATALHLAKLDAKLAITGR 119
+ AD+T+E+ +II++ +K + K++VLVNNA G A D
Sbjct: 63 VVADVTTEDGQDQIINSTLKQFGKIDVLVNNA------GAAIPDAFGTTGTDQ------- 109
Query: 120 NVEQLNKVSESCQSVSKNKPLVIQADLTSEEDTKRIIDTVVKHYQKLNVLVNNAGNIVNV 179
++ +K ++ +L + + V H LV + G IVNV
Sbjct: 110 GIDIYHKT--------------LKLNLQA---VIEMTKKVKPH------LVASKGEIVNV 146
Query: 180 SS-VNGLRSFPGVLAYCVSKAAVDQFTSCTALELASKGVRVNSVNPGVTLTNLHKNSGID 238
SS V G ++ P L Y ++KAA+DQ+T TA++LA G+RVNSV+PG+ T G+
Sbjct: 147 SSIVAGPQAQPDFLYYAIAKAALDQYTRSTAIDLAKFGIRVNSVSPGMVETGFTNAMGMP 206
Query: 239 ---QQAYQNFLERSKETHALGRVGNPEEVAKAIAFLASDDASF-TTGEHLTVDGGRHAMC 294
Q + NF+ KE +G G PE +A I FLA + SF G+ + DGG +
Sbjct: 207 DQASQKFYNFMASHKECIPIGAAGKPEHIANIILFLADRNLSFYILGQSIVADGGTSLVM 266
>1xhl_A Short-chain dehydrogenase/reductase family member putative
tropinone reductase-II...; parallel beta-sheet of seven
strands in the order 3214567; HET: NDP TNE; 2.40A
{Caenorhabditis elegans} SCOP: c.2.1.2
Length = 297
Score = 271 bits (694), Expect = 7e-91
Identities = 91/299 (30%), Positives = 139/299 (46%), Gaps = 45/299 (15%)
Query: 3 FTGKVILVTGASSGIGAATALHLAKLDAKLAITGRNVEQLNKVSESCQS--VSKNKPLVI 60
F+GK +++TG+S+GIG + A+ AK A++ ITGRN ++L + + V K +
Sbjct: 24 FSGKSVIITGSSNGIGRSAAVIFAKEGAQVTITGRNEDRLEETKQQILKAGVPAEKINAV 83
Query: 61 QADLTSEEDTKRIIDTVVKHYQKLNVLVNNAVTGASSGIGAATALHLAKLDAKLAITGRN 120
AD+T II+T + + K+++LVNNA G A
Sbjct: 84 VADVTEASGQDDIINTTLAKFGKIDILVNNA------GANLADGTANTDQP--------- 128
Query: 121 VEQLNKVSESCQSVSKNKPLVIQADLTSEEDTKRIIDTVVKHYQKLNVLVNNAGNIVNVS 180
VE K + + + + +H L+ G IVNVS
Sbjct: 129 VELYQKT--------------FKLNFQA---VIEMTQKTKEH------LIKTKGEIVNVS 165
Query: 181 S-VNGLRSFPGVLAYCVSKAAVDQFTSCTALELASKGVRVNSVNPGVTLTNLHKNSGIDQ 239
S V G ++ G Y +KAA+DQ+T CTA++L GVRVNSV+PG T G+ +
Sbjct: 166 SIVAGPQAHSGYPYYACAKAALDQYTRCTAIDLIQHGVRVNSVSPGAVATGFMGAMGLPE 225
Query: 240 QAYQ---NFLERSKETHALGRVGNPEEVAKAIAFLASDD-ASFTTGEHLTVDGGRHAMC 294
A +F+ KE +G G PEE+A I FLA + +S+ G+ + DGG +
Sbjct: 226 TASDKLYSFIGSRKECIPVGHCGKPEEIANIIVFLADRNLSSYIIGQSIVADGGSTLVM 284
>3ucx_A Short chain dehydrogenase; ssgcid, seattle structural genomics
center for infectious DI dehydrogenase, oxidoreductase;
HET: 1PE; 1.85A {Mycobacterium smegmatis}
Length = 264
Score = 227 bits (581), Expect = 3e-74
Identities = 74/303 (24%), Positives = 121/303 (39%), Gaps = 57/303 (18%)
Query: 1 MNFTGKVILVTGASSGIGAATALHLAKLDAKLAITGRNVEQLNKVSESCQSVSKNKPLVI 60
T KV++++G +G A A+ A L + R VE+L V++ + + L +
Sbjct: 7 GLLTDKVVVISGVGPALGTTLARRCAEQGADLVLAARTVERLEDVAKQVTDTGR-RALSV 65
Query: 61 QADLTSEEDTKRIIDTVVKHYQKLNVLVNNAVTGASSGIGAATALHLAKLDAKLAITGRN 120
D+T + ++D +K Y +++V++NNA
Sbjct: 66 GTDITDDAQVAHLVDETMKAYGRVDVVINNA------FR--------------------- 98
Query: 121 VEQLNKVSESCQSVSKNKPLVIQADLTSEEDTKRIIDTVVK------HYQKLNVLVNNAG 174
V KP A+ T E + I+ V L + G
Sbjct: 99 -------------VPSMKPF---ANTT-FEHMRDAIELTVFGALRLIQGF-TPALEESKG 140
Query: 175 NIVNVSSVNGLRSFPGVLAYCVSKAAVDQFTSCTALELASKGVRVNSVNPGVTLT----- 229
+VNV+S+ S AY ++K+A+ + A EL KG+RVNSV PG
Sbjct: 141 AVVNVNSMVVRHSQAKYGAYKMAKSALLAMSQTLATELGEKGIRVNSVLPGYIWGGTLKS 200
Query: 230 NLHKNSGIDQQAYQNFLERSKETHALGRVGNPEEVAKAIAFLASDDASFTTGEHLTVDGG 289
+G + ++ + L R+ +EVA AI F+ASD AS TG+ L V+ G
Sbjct: 201 YFEHQAGKYGTSVEDIYNAAAAGSDLKRLPTEDEVASAILFMASDLASGITGQALDVNCG 260
Query: 290 RHA 292
+
Sbjct: 261 EYK 263
>4fgs_A Probable dehydrogenase protein; PSI-biology, nysgrc, structural
genomics, NEW YORK structura genomics research
consortium, three layer; 1.76A {Rhizobium etli}
Length = 273
Score = 221 bits (565), Expect = 1e-71
Identities = 85/297 (28%), Positives = 118/297 (39%), Gaps = 54/297 (18%)
Query: 1 MNFTGKVILVTGASSGIGAATALHLAKLDAKLAITGRNVEQLNKVSESCQSVSKNKPLVI 60
K+ ++TGA+SGIG A A A++ ITGR + L+ + I
Sbjct: 25 QRLNAKIAVITGATSGIGLAAAKRFVAEGARVFITGRRKDVLDAAIAEI----GGGAVGI 80
Query: 61 QADLTSEEDTKRIIDTVVKHYQKLNVLVNNAVTGASSGIGAATALHLAKLDAKLAITGRN 120
QAD + + R+ + V +++VL NA G G+ L
Sbjct: 81 QADSANLAELDRLYEKVKAEAGRIDVLFVNA------GGGSMLPLGE------------- 121
Query: 121 VEQLNKVSESCQSVSKNKPLVIQADLTSEEDTKRIIDTVVKHY----QKLNVLVNNAGNI 176
+EE D VK QK L+ ++
Sbjct: 122 --------------------------VTEEQYDDTFDRNVKGVLFTVQKALPLLARGSSV 155
Query: 177 VNVSSVNGLRSFPGVLAYCVSKAAVDQFTSCTALELASKGVRVNSVNPGVTLTN-LHKNS 235
V S G P Y SKAA+ F L+L +G+R+N+++PG T T L + +
Sbjct: 156 VLTGSTAGSTGTPAFSVYAASKAALRSFARNWILDLKDRGIRINTLSPGPTETTGLVELA 215
Query: 236 GIDQQAYQNFLERSKETHALGRVGNPEEVAKAIAFLASDDASFTTGEHLTVDGGRHA 292
G D Q L +GRVG EEVA A FLASDD+SF TG L VDGG
Sbjct: 216 GKDPVQQQGLLNALAAQVPMGRVGRAEEVAAAALFLASDDSSFVTGAELFVDGGSAQ 272
>3svt_A Short-chain type dehydrogenase/reductase; ssgcid, seattle
structural genomics center for infectious DI
oxidoreductase; 2.00A {Mycobacterium ulcerans}
Length = 281
Score = 220 bits (562), Expect = 5e-71
Identities = 75/300 (25%), Positives = 117/300 (39%), Gaps = 56/300 (18%)
Query: 1 MNFTGKVILVTGASSGIGAATALHLAKLDAKLAITGRNVEQLNKVSESCQSVSKN--KPL 58
++F + LVTG SGIG A L A + I GRN ++L + +++ N
Sbjct: 7 LSFQDRTYLVTGGGSGIGKGVAAGLVAAGASVMIVGRNPDKLAGAVQELEALGANGGAIR 66
Query: 59 VIQADLTSEEDTKRIIDTVVKHYQKLNVLVNNAVTGASSGIGAATALHLAKLDAKLAITG 118
D+T+E++T R +D V + +L+ +V+ A G
Sbjct: 67 YEPTDITNEDETARAVDAVTAWHGRLHGVVHCA------GGSENIGP------------- 107
Query: 119 RNVEQLNKVSESCQSVSKNKPLVIQADLTSEEDTKRIIDTVVK------HYQKLNVLVNN 172
E +R +D V + ++
Sbjct: 108 -------------------------ITQVDSEAWRRTVDLNVNGTMYVLKHAAREMVRGG 142
Query: 173 AGNIVNVSSVNGLRSFPGVLAYCVSKAAVDQFTSCTALELASKGVRVNSVNPGVTLTNLH 232
G+ V +SS+ + AY V+K+AVD A EL + VRVNS+ PG+ T+L
Sbjct: 143 GGSFVGISSIAASNTHRWFGAYGVTKSAVDHLMQLAADELGASWVRVNSIRPGLIRTDLV 202
Query: 233 KNSGIDQQAYQNFLERSKETHALGRVGNPEEVAKAIAFLASDDASFTTGEHLTVDGGRHA 292
+ ++ L R G E+VA FL SD ASF TG+ + VDGG+
Sbjct: 203 AAITESAELSSDYAMC----TPLPRQGEVEDVANMAMFLLSDAASFVTGQVINVDGGQML 258
>2cfc_A 2-(R)-hydroxypropyl-COM dehydrogenase; NAD, oxidoreductase; HET:
NAD KPC; 1.8A {Xanthobacter autotrophicus}
Length = 250
Score = 216 bits (552), Expect = 5e-70
Identities = 77/295 (26%), Positives = 124/295 (42%), Gaps = 52/295 (17%)
Query: 5 GKVILVTGASSGIGAATALHLAKLDAKLAITGRNVEQLNKVSESCQSVSKNKPLVIQADL 64
+V +VTGASSG G A A ++A + E L + + + +K L ++AD+
Sbjct: 2 SRVAIVTGASSGNGLAIATRFLARGDRVAALDLSAETLEETARTHWHAYADKVLRVRADV 61
Query: 65 TSEEDTKRIIDTVVKHYQKLNVLVNNAVTGASSGIGAATALHLAKLDAKLAITGRNVEQL 124
E D I ++ + ++VLVNNA GI +++ +
Sbjct: 62 ADEGDVNAAIAATMEQFGAIDVLVNNA------GITG---------NSEAGVLHT----- 101
Query: 125 NKVSESCQSVSKNKPLVIQADLTSEEDTKRIIDTVVK------HYQKLNVLVNNAGNIVN 178
T E +++ V+ ++L+ AG IVN
Sbjct: 102 ----------------------TPVEQFDKVMAVNVRGIFLGCRAVLPHMLLQGAGVIVN 139
Query: 179 VSSVNGLRSFPGVLAYCVSKAAVDQFTSCTALELASKGVRVNSVNPGVTLTNLHKNSGID 238
++SV L +FPG AY SK AV Q T A++ A G+R N+V PG+ T + +
Sbjct: 140 IASVASLVAFPGRSAYTTSKGAVLQLTKSVAVDYAGSGIRCNAVCPGMIETPMTQWRLDQ 199
Query: 239 QQAYQNFLERSKETHALGRVGNPEEVAKAIAFLASDDASFTTGEHLTVDGGRHAM 293
+ L R +G +VA A+ FLA +DA++ G L +DG A+
Sbjct: 200 PELRDQVLAR----IPQKEIGTAAQVADAVMFLAGEDATYVNGAALVMDGAYTAI 250
>4dqx_A Probable oxidoreductase protein; structural genomics, PSI-biology,
NEW YORK structural genomi research consortium, nysgrc;
2.00A {Rhizobium etli}
Length = 277
Score = 217 bits (554), Expect = 6e-70
Identities = 77/296 (26%), Positives = 120/296 (40%), Gaps = 55/296 (18%)
Query: 1 MNFTGKVILVTGASSGIGAATALHLAKLDAKLAITGRNVEQLNKVSESCQSVSKNKPLVI 60
M+ +V +VTG SGIG ATA AK A + + N + +V+ S K +
Sbjct: 23 MDLNQRVCIVTGGGSGIGRATAELFAKNGAYVVVADVNEDAAVRVANEIGS----KAFGV 78
Query: 61 QADLTSEEDTKRIIDTVVKHYQKLNVLVNNAVTGASSGIGAATALHLAKLDAKLAITGRN 120
+ D++S +D + +++ + +++VLVNNA G G +
Sbjct: 79 RVDVSSAKDAESMVEKTTAKWGRVDVLVNNA------GFGTTGNVVT------------- 119
Query: 121 VEQLNKVSESCQSVSKNKPLVIQADLTSEEDTKRIIDTVVK------HYQKLNVLVNNAG 174
EE RI+ VK Y + N G
Sbjct: 120 --------------------------IPEETWDRIMSVNVKGIFLCSKYVIPVMRRNGGG 153
Query: 175 NIVNVSSVNGLRSFPGVLAYCVSKAAVDQFTSCTALELASKGVRVNSVNPGVTLTNLHKN 234
+I+N +S + AY SK A+ T A++ A +G+RVN+V PG +
Sbjct: 154 SIINTTSYTATSAIADRTAYVASKGAISSLTRAMAMDHAKEGIRVNAVAPGTIDSPYFTK 213
Query: 235 SGIDQQAYQNFLERSKETHALGRVGNPEEVAKAIAFLASDDASFTTGEHLTVDGGR 290
+ + + R+G EE+A+A+ FLASD + F TG LTVDGG
Sbjct: 214 IFAEAKDPAKLRSDFNARAVMDRMGTAEEIAEAMLFLASDRSRFATGSILTVDGGS 269
>1yde_A Retinal dehydrogenase/reductase 3; oxidoreductase, structural
genomics, structural genomics CON SGC; 2.40A {Homo
sapiens} SCOP: c.2.1.2
Length = 270
Score = 215 bits (549), Expect = 3e-69
Identities = 70/298 (23%), Positives = 116/298 (38%), Gaps = 57/298 (19%)
Query: 1 MNFTGKVILVTGASSGIGAATALHLAKLDAKLAITGRNVEQLNKVSESCQSVSKNKPLVI 60
+ GKV++VTG GIGA A++ I ++ + + + I
Sbjct: 5 TRYAGKVVVVTGGGRGIGAGIVRAFVNSGARVVICDKDESGGRALEQELPGA-----VFI 59
Query: 61 QADLTSEEDTKRIIDTVVKHYQKLNVLVNNAVTGASSGIGAATALHLAKLDAKLAITGRN 120
D+T E+D K ++ ++ + +L+ +VNNA G
Sbjct: 60 LCDVTQEDDVKTLVSETIRRFGRLDCVVNNA------GHHP------------------- 94
Query: 121 VEQLNKVSESCQSVSKNKPLVIQADLTSEEDTKRIIDTVVK------HYQKLNVLVNNAG 174
+ + TS + +++++ + L L + G
Sbjct: 95 ---------------PPQRP----EETSAQGFRQLLELNLLGTYTLTKLA-LPYLRKSQG 134
Query: 175 NIVNVSSVNGLRSFPGVLAYCVSKAAVDQFTSCTALELASKGVRVNSVNPGVTLTNLHKN 234
N++N+SS+ G + Y +K AV T AL+ + GVRVN ++PG T L +
Sbjct: 135 NVINISSLVGAIGQAQAVPYVATKGAVTAMTKALALDESPYGVRVNCISPGNIWTPLWEE 194
Query: 235 SGIDQQAYQNFLERSKETHALGRVGNPEEVAKAIAFLASDDASFTTGEHLTVDGGRHA 292
+ + LGR+G P EV A FLAS +A+F TG L V GG
Sbjct: 195 LAALMPDPRASIREGMLAQPLGRMGQPAEVGAAAVFLAS-EANFCTGIELLVTGGAEL 251
>1iy8_A Levodione reductase; oxidoreductase; HET: NAD; 1.60A {Leifsonia
aquatica} SCOP: c.2.1.2
Length = 267
Score = 214 bits (548), Expect = 3e-69
Identities = 66/299 (22%), Positives = 120/299 (40%), Gaps = 53/299 (17%)
Query: 3 FTGKVILVTGASSGIGAATALHLAKLDAKLAITGRNVEQLNKVSESCQSVSKN-KPLVIQ 61
FT +V+L+TG SG+G ATA+ LA AKL++ + E L + + + + L
Sbjct: 11 FTDRVVLITGGGSGLGRATAVRLAAEGAKLSLVDVSSEGLEASKAAVLETAPDAEVLTTV 70
Query: 62 ADLTSEEDTKRIIDTVVKHYQKLNVLVNNAVTGASSGIGAATALHLAKLDAKLAITGRNV 121
AD++ E + + + + +++ NNA GI
Sbjct: 71 ADVSDEAQVEAYVTATTERFGRIDGFFNNA------GIEGKQNP---------------- 108
Query: 122 EQLNKVSESCQSVSKNKPLVIQADLTSEEDTKRIIDTVVK------HYQKLNVLVNNAGN 175
+ + + +++ ++ + +G
Sbjct: 109 ----------------------TESFTAAEFDKVVSINLRGVFLGLEKVLKIMREQGSGM 146
Query: 176 IVNVSSVNGLRSFPGVLAYCVSKAAVDQFTSCTALELASKGVRVNSVNPGVTLTNLHKN- 234
+VN +SV G+R Y +K V T +A+E G+R+N++ PG T + +N
Sbjct: 147 VVNTASVGGIRGIGNQSGYAAAKHGVVGLTRNSAVEYGRYGIRINAIAPGAIWTPMVENS 206
Query: 235 -SGIDQQAYQNFLERSKETHALGRVGNPEEVAKAIAFLASDDASFTTGEHLTVDGGRHA 292
+D + + E + + R G E+A +AFL SDDAS+ + +DGG+ A
Sbjct: 207 MKQLDPENPRKAAEEFIQVNPSKRYGEAPEIAAVVAFLLSDDASYVNATVVPIDGGQSA 265
>3vtz_A Glucose 1-dehydrogenase; rossmann fold, oxidoreductase, NAD
binding; 2.30A {Thermoplasma volcanium}
Length = 269
Score = 213 bits (546), Expect = 6e-69
Identities = 93/301 (30%), Positives = 132/301 (43%), Gaps = 69/301 (22%)
Query: 1 MN-FTGKVILVTGASSGIGAATALHLAKLDAKLAITGRNVEQLNKVSESCQSVSKNKPLV 59
M FT KV +VTG SSGIG A L + AK+ + + VS+
Sbjct: 9 MEEFTDKVAIVTGGSSGIGLAVVDALVRYGAKVVSVSLDEKSDVNVSDH----------- 57
Query: 60 IQADLTSEEDTKRIIDTVVKHYQKLNVLVNNAVTGASSGIGAATALHLAKLDAKLAITGR 119
+ D+T+EE+ K ++ K Y ++++LVNNA GI + LHL
Sbjct: 58 FKIDVTNEEEVKEAVEKTTKKYGRIDILVNNA------GIEQYSPLHL------------ 99
Query: 120 NVEQLNKVSESCQSVSKNKPLVIQADLTSEEDTKRIIDTVVK------HYQKLNVLVNNA 173
T E +RIID V Y +L
Sbjct: 100 ---------------------------TPTEIWRRIIDVNVNGSYLMAKYTIPVMLAIGH 132
Query: 174 GNIVNVSSVNGLRSFPGVLAYCVSKAAVDQFTSCTALELASKGVRVNSVNPGVTLTNL-- 231
G+I+N++SV + AY SK A+ T A++ A +R N+V PG +T +
Sbjct: 133 GSIINIASVQSYAATKNAAAYVTSKHALLGLTRSVAIDYA-PKIRCNAVCPGTIMTPMVI 191
Query: 232 ---HKNSGIDQQAYQNFLERSKETHALGRVGNPEEVAKAIAFLASDDASFTTGEHLTVDG 288
G D+ A + +E H +GR+G PEEVA+ +AFLASD +SF TG LTVDG
Sbjct: 192 KAAKMEVGEDENAVERKIEEWGRQHPMGRIGRPEEVAEVVAFLASDRSSFITGACLTVDG 251
Query: 289 G 289
G
Sbjct: 252 G 252
>4fn4_A Short chain dehydrogenase; NADH-binding, rossmann fold,
oxidoreductase; HET: NAD; 1.75A {Sulfolobus
acidocaldarius}
Length = 254
Score = 213 bits (544), Expect = 9e-69
Identities = 72/299 (24%), Positives = 123/299 (41%), Gaps = 53/299 (17%)
Query: 1 MNFTGKVILVTGASSGIGAATALHLAKLDAKLAITGRNVEQLNKVSESCQSVSKNKPLVI 60
+ KV++VTGA SGIG A A A D+ + ++LN++ + + + L +
Sbjct: 3 QSLKNKVVIVTGAGSGIGRAIAKKFALNDSIVVAVELLEDRLNQIVQELRG-MGKEVLGV 61
Query: 61 QADLTSEEDTKRIIDTVVKHYQKLNVLVNNAVTGASSGIGAATALHLAKLDAKLAITGRN 120
+AD++ ++D + + + Y +++VL NNA GI +A+
Sbjct: 62 KADVSKKKDVEEFVRRTFETYSRIDVLCNNA------GIMDGVTP-VAE----------- 103
Query: 121 VEQLNKVSESCQSVSKNKPLVIQADLTSEEDTKRIIDTVVK------HYQKLNVLVNNAG 174
S+E +R++ + +L G
Sbjct: 104 --------------------------VSDELWERVLAVNLYSAFYSSRAVIPIMLKQGKG 137
Query: 175 NIVNVSSVNGLRSFPGVLAYCVSKAAVDQFTSCTALELASKGVRVNSVNPGVTLTNLHKN 234
IVN +S+ G+R Y V+K + T A +G+R +V PG TN+
Sbjct: 138 VIVNTASIAGIRGGFAGAPYTVAKHGLIGLTRSIAAHYGDQGIRAVAVLPGTVKTNI--G 195
Query: 235 SGIDQQAYQNFLERSKETHALGRVGNPEEVAKAIAFLASDDASFTTGEHLTVDGGRHAM 293
G + + +K R+ PE++A I FLASD+ASF G+ + VDGG +
Sbjct: 196 LGSSKPSELGMRTLTKLMSLSSRLAEPEDIANVIVFLASDEASFVNGDAVVVDGGLTVL 254
>3kzv_A Uncharacterized oxidoreductase YIR035C; cytoplasmic protein,
unknown function, structural genomics, MCSG, protein
structure initiative; 2.00A {Saccharomyces cerevisiae}
Length = 254
Score = 212 bits (543), Expect = 1e-68
Identities = 66/303 (21%), Positives = 107/303 (35%), Gaps = 73/303 (24%)
Query: 5 GKVILVTGASSGIGAATALHLAKLDAKLAITG--RNVEQLNKVSESCQSVSKNKPLVIQA 62
GKVILVTG S GIG + L LD + G R+ L K+ E + +
Sbjct: 2 GKVILVTGVSRGIGKSIVDVLFSLDKDTVVYGVARSEAPLKKLKEKYGD----RFFYVVG 57
Query: 63 DLTSEEDTKRIIDTVVKHYQKLNVLVNNAVTGASSGIGAATALHLAKLDAKLAITGRNVE 122
D+T + K++++ VK + K++ LV NA G+ +E
Sbjct: 58 DITEDSVLKQLVNAAVKGHGKIDSLVANA------GV---------------------LE 90
Query: 123 QLNKVSESCQSVSKNKPLVIQADLTSEEDTKRIIDT-----------VVKHYQKLNVLVN 171
+ V+E K++ D + L
Sbjct: 91 PVQNVNE-----------------IDVNAWKKLYDINFFSIVSLVGIALPE------LKK 127
Query: 172 NAGNIVNVSSVNGLRSFPGVLAYCVSKAAVDQFTSCTALELASKGVRVNSVNPGVTLTNL 231
GN+V VSS F AY SKAA++ F A E + V+ +V PG+ T++
Sbjct: 128 TNGNVVFVSSDACNMYFSSWGAYGSSKAALNHFAMTLANE--ERQVKAIAVAPGIVDTDM 185
Query: 232 HKN---SGIDQQAYQNFLERSKETHALGRVGNPEEVAKAIAFLASDD-ASFTTGEHLTVD 287
N + L+ + ++ + A A LA G++L+ +
Sbjct: 186 QVNIRENVGPSSMSAEQLKMFRGLKENNQLLDSSVPATVYAKLALHGIPDGVNGQYLSYN 245
Query: 288 GGR 290
Sbjct: 246 DPA 248
>2d1y_A Hypothetical protein TT0321; strucrtural genomics, thermus
thermophilus HB8, structural genomics, NPPSFA; HET: NAD;
1.65A {Thermus thermophilus} SCOP: c.2.1.2
Length = 256
Score = 212 bits (543), Expect = 1e-68
Identities = 83/304 (27%), Positives = 116/304 (38%), Gaps = 69/304 (22%)
Query: 1 MN-FTGKVILVTGASSGIGAATALHLAKLDAKLAITGRNVEQLNKVSESCQSVSKNKPLV 59
M F GK +LVTG + GIG A A A+ A +A+ E
Sbjct: 1 MGLFAGKGVLVTGGARGIGRAIAQAFAREGALVALCDLRPEGKEVAEAI-------GGAF 53
Query: 60 IQADLTSEEDTKRIIDTVVKHYQKLNVLVNNAVTGASSGIGAATALHLAKLDAKLAITGR 119
Q DL E + R ++ +++VLVNNA I A +
Sbjct: 54 FQVDLEDERERVRFVEEAAYALGRVDVLVNNA------AIAAPGSALT------------ 95
Query: 120 NVEQLNKVSESCQSVSKNKPLVIQADLTSEEDTKRIIDT-----------VVKHYQKLNV 168
+ +R+++ + +K
Sbjct: 96 ---------------------------VRLPEWRRVLEVNLTAPMHLSALAAREMRK--- 125
Query: 169 LVNNAGNIVNVSSVNGLRSFPGVLAYCVSKAAVDQFTSCTALELASKGVRVNSVNPGVTL 228
G IVNV+SV GL + AY SK + T AL+LA +RVN+V PG
Sbjct: 126 --VGGGAIVNVASVQGLFAEQENAAYNASKGGLVNLTRSLALDLAPLRIRVNAVAPGAIA 183
Query: 229 TNLHKNSGIDQQAYQNFLERSKETHALGRVGNPEEVAKAIAFLASDDASFTTGEHLTVDG 288
T + + ++ HAL R+G PEEVA+A+ FLAS+ ASF TG L VDG
Sbjct: 184 TEAVLEAIALSPDPERTRRDWEDLHALRRLGKPEEVAEAVLFLASEKASFITGAILPVDG 243
Query: 289 GRHA 292
G A
Sbjct: 244 GMTA 247
>4eso_A Putative oxidoreductase; NADP, structural genomics, PSI-biology,
NEW structural genomics research consortium, nysgrc;
HET: MSE NAP; 1.91A {Sinorhizobium meliloti} PDB: 3vc7_A
Length = 255
Score = 212 bits (542), Expect = 2e-68
Identities = 78/294 (26%), Positives = 117/294 (39%), Gaps = 55/294 (18%)
Query: 1 MN-FTGKVILVTGASSGIGAATALHLAKLDAKLAITGRNVEQLNKVSESCQSVSKNKPLV 59
M + GK +V G + G+G AT L + A++ +TGRN + ++ E +
Sbjct: 3 MGNYQGKKAIVIGGTHGMGLATVRRLVEGGAEVLLTGRNESNIARIREEFGP----RVHA 58
Query: 60 IQADLTSEEDTKRIIDTVVKHYQKLNVLVNNAVTGASSGIGAATALHLAKLDAKLAITGR 119
+++D+ + + + +++L NA G+
Sbjct: 59 LRSDIADLNEIAVLGAAAGQTLGAIDLLHINA------GVSELEPF-------------- 98
Query: 120 NVEQLNKVSESCQSVSKNKPLVIQADLTSEEDTKRIIDTVVK----HYQKLNVLVNNAGN 175
D SE R K Q+L L+ G+
Sbjct: 99 -------------------------DQVSEASYDRQFAVNTKGAFFTVQRLTPLIREGGS 133
Query: 176 IVNVSSVNGLRSFPGVLAYCVSKAAVDQFTSCTALELASKGVRVNSVNPGVTLTNLHKNS 235
IV SSV PG+ Y SKAA+ F S A EL +G+RVNSV+PG T +
Sbjct: 134 IVFTSSVADEGGHPGMSVYSASKAALVSFASVLAAELLPRGIRVNSVSPGFIDTPTKGVA 193
Query: 236 GIDQQAYQNFLERSKETHALGRVGNPEEVAKAIAFLASDDASFTTGEHLTVDGG 289
GI + F + R G +EVA+A+ FLA +A+FTTG L VDGG
Sbjct: 194 GITEAERAEFKTLGDNITPMKRNGTADEVARAVLFLAF-EATFTTGAKLAVDGG 246
>3n74_A 3-ketoacyl-(acyl-carrier-protein) reductase; seattle structural
genomics center for infectious disease, S brucellosis;
2.20A {Brucella melitensis biovar abortus}
Length = 261
Score = 212 bits (542), Expect = 2e-68
Identities = 79/303 (26%), Positives = 127/303 (41%), Gaps = 62/303 (20%)
Query: 1 MNFTGKVILVTGASSGIGAATALHLAKLDAKLAITGRNVEQLNKVSESCQSVSKNKPLVI 60
M+ GKV L+TGA SG G A AK AK+ I R+ +V+ + L +
Sbjct: 5 MSLEGKVALITGAGSGFGEGMAKRFAKGGAKVVIVDRDKAGAERVAGEI----GDAALAV 60
Query: 61 QADLTSEEDTKRIIDTVVKHYQKLNVLVNNAVTGASSGIGAATALHLAKLDAKLAITGRN 120
AD++ E D ++ + + K+++LVNNA GIG
Sbjct: 61 AADISKEADVDAAVEAALSKFGKVDILVNNA------GIG-------------------- 94
Query: 121 VEQLNKVSESCQSVSKNKPLVIQADLTSEEDTKRIIDT-----------VVKHYQKLNVL 169
K + +L E+ RI+ ++ H+++ N
Sbjct: 95 --------------HKPQNA----ELVEPEEFDRIVGVNVRGVYLMTSKLIPHFKE-NGA 135
Query: 170 VNNAGNIVNVSSVNGLRSFPGVLAYCVSKAAVDQFTSCTALELASKGVRVNSVNPGVTLT 229
I+NV+S R P + Y +K V T A+ELA +RV ++NP T
Sbjct: 136 KGQECVILNVASTGAGRPRPNLAWYNATKGWVVSVTKALAIELAPAKIRVVALNPVAGET 195
Query: 230 NLHKNSGIDQQAYQNFLERSKETHALGRVGNPEEVAKAIAFLASDDASFTTGEHLTVDGG 289
L + + + ++ +++ +GR+ P+++A+A AFL S AS TG L VDGG
Sbjct: 196 PL--LTTFMGEDSEEIRKKFRDSIPMGRLLKPDDLAEAAAFLCSPQASMITGVALDVDGG 253
Query: 290 RHA 292
R
Sbjct: 254 RSI 256
>3tzq_B Short-chain type dehydrogenase/reductase; ssgcid, structural
genomics, seattle structural genomics CEN infectious
disease, oxidoreductase; 2.50A {Mycobacterium marinum}
Length = 271
Score = 212 bits (542), Expect = 3e-68
Identities = 66/301 (21%), Positives = 113/301 (37%), Gaps = 58/301 (19%)
Query: 1 MNFTGKVILVTGASSGIGAATALHLAKLDAKLAITGRNVEQLNKVSESCQSVSKNKPLVI 60
KV ++TGA GIG T+ LA+ A++ + L + S +
Sbjct: 7 AELENKVAIITGACGGIGLETSRVLARAGARVVLADLPETDLAGAAASVGR----GAVHH 62
Query: 61 QADLTSEEDTKRIIDTVVKHYQKLNVLVNNAVTGASSGIGAATALHLAKLDAKLAITGRN 120
DLT+E + +ID + + +L+++ NNA + + +
Sbjct: 63 VVDLTNEVSVRALIDFTIDTFGRLDIVDNNA------AHSDPADMLVTQ----------- 105
Query: 121 VEQLNKVSESCQSVSKNKPLVIQADLTSEEDTKRIIDTVVK------HYQKLNVLVNNAG 174
+ + + Y ++ G
Sbjct: 106 --------------------------MTVDVWDDTFTVNARGTMLMCKYAIPRLISAGGG 139
Query: 175 NIVNVSSVNGLRSFPGVLAYCVSKAAVDQFTSCTALELASKGVRVNSVNPGVTLTNLHKN 234
IVN+SS ++ AY +KAA++ T A + GVR N++ PG+ T
Sbjct: 140 AIVNISSATAHAAYDMSTAYACTKAAIETLTRYVATQYGRHGVRCNAIAPGLVRTPR--- 196
Query: 235 SGIDQQAYQNFLERSKETHALGRVGNPEEVAKAIAFLASDDASFTTGEHLTVDGGRHAMC 294
++ Q ++ H GR+G P E+A+ + FLASD A+F TG+ + D G A
Sbjct: 197 --LEVGLPQPIVDIFATHHLAGRIGEPHEIAELVCFLASDRAAFITGQVIAADSGLLAHL 254
Query: 295 P 295
P
Sbjct: 255 P 255
>1gee_A Glucose 1-dehydrogenase; short-chain dehydrogenase/reductase,
oxidoreductase; HET: NAD; 1.60A {Bacillus megaterium}
SCOP: c.2.1.2 PDB: 1rwb_A* 1gco_A* 1g6k_A* 3aus_A
3aut_A* 3auu_A*
Length = 261
Score = 210 bits (538), Expect = 8e-68
Identities = 77/301 (25%), Positives = 133/301 (44%), Gaps = 66/301 (21%)
Query: 1 MNFTGKVILVTGASSGIGAATALHLAKLDAKLAITGR-NVEQLNKVSESCQSVSKNKPLV 59
+ GKV+++TG+S+G+G + A+ A AK+ + R ++ N V E + V + +
Sbjct: 3 KDLEGKVVVITGSSTGLGKSMAIRFATEKAKVVVNYRSKEDEANSVLEEIKKVG-GEAIA 61
Query: 60 IQADLTSEEDTKRIIDTVVKHYQKLNVLVNNAVTGASSGIGAATALHLAKLDAKLAITGR 119
++ D+T E D ++ + +K + KL+V++NNA G+ + H
Sbjct: 62 VKGDVTVESDVINLVQSAIKEFGKLDVMINNA------GLENPVSSHE------------ 103
Query: 120 NVEQLNKVSESCQSVSKNKPLVIQADLTSEEDTKRIIDT-----------VVKHYQKLNV 168
S D ++IDT +K++ +
Sbjct: 104 ---------------------------MSLSDWNKVIDTNLTGAFLGSREAIKYFVE--- 133
Query: 169 LVNNAGNIVNVSSVNGLRSFPGVLAYCVSKAAVDQFTSCTALELASKGVRVNSVNPGVTL 228
+ G ++N+SSV+ +P + Y SK + T ALE A KG+RVN++ PG
Sbjct: 134 -NDIKGTVINMSSVHEKIPWPLFVHYAASKGGMKLMTETLALEYAPKGIRVNNIGPGAIN 192
Query: 229 TNLHKNSGIDQQAYQNFLERSKETHALGRVGNPEEVAKAIAFLASDDASFTTGEHLTVDG 288
T ++ D + + +G +G PEE+A A+LAS +AS+ TG L DG
Sbjct: 193 TPINAEKFADPEQRADVESM----IPMGYIGEPEEIAAVAAWLASSEASYVTGITLFADG 248
Query: 289 G 289
G
Sbjct: 249 G 249
>2dtx_A Glucose 1-dehydrogenase related protein; rossmann fold,
oxidoreductase; HET: BMA; 1.60A {Thermoplasma
acidophilum} PDB: 2dtd_A* 2dte_A* 2zk7_A
Length = 264
Score = 209 bits (534), Expect = 3e-67
Identities = 83/310 (26%), Positives = 116/310 (37%), Gaps = 79/310 (25%)
Query: 2 NFTGKVILVTGASSGIGAATALHLAKLDAKLAITGRNVEQLNKVSESCQSVSKNKPLVIQ 61
+ KV++VTGAS GIG A A +K+ + K I+
Sbjct: 5 DLRDKVVIVTGASMGIGRAIAERFVDEGSKVIDLSIHDPGEAKYDH------------IE 52
Query: 62 ADLTSEEDTKRIIDTVVKHYQKLNVLVNNAVTGASSGIGAATALHLAKLDAKLAITGRNV 121
D+T+ + K ID + K Y ++VLVNNA GI + +
Sbjct: 53 CDVTNPDQVKASIDHIFKEYGSISVLVNNA------GIESYGKIES-------------- 92
Query: 122 EQLNKVSESCQSVSKNKPLVIQADLTSEEDTKRIIDT-----------VVKHYQKLNVLV 170
S + +RIID + + +
Sbjct: 93 -------------------------MSMGEWRRIIDVNLFGYYYASKFAIPYMIR----- 122
Query: 171 NNAGNIVNVSSVNGLRSFPGVLAYCVSKAAVDQFTSCTALELASKGVRVNSVNPGVTLTN 230
+ +IVN+SSV AY SK AV T AL+ A +R N+V P T
Sbjct: 123 SRDPSIVNISSVQASIITKNASAYVTSKHAVIGLTKSIALDYA-PLLRCNAVCPATIDTP 181
Query: 231 L-----HKNSGIDQQAYQNFLERSKETHALGRVGNPEEVAKAIAFLASDDASFTTGEHLT 285
L G D + + H + R+G P+EVA A+AFLAS +ASF TG L
Sbjct: 182 LVRKAAELEVGSDPMRIEKKISEWGHEHPMQRIGKPQEVASAVAFLASREASFITGTCLY 241
Query: 286 VDGGRHAMCP 295
VDGG P
Sbjct: 242 VDGGLSIRAP 251
>3v8b_A Putative dehydrogenase, possibly 3-oxoacyl-[acyl- protein]
reductase; PSI-biology, structural genomics, protein
structure initiati nysgrc; 2.70A {Sinorhizobium
meliloti}
Length = 283
Score = 209 bits (534), Expect = 7e-67
Identities = 80/304 (26%), Positives = 124/304 (40%), Gaps = 56/304 (18%)
Query: 1 MNFTGKVILVTGASSGIGAATALHLAKLDAKLAITGRNVEQLNKVSESCQSVSKNKPLVI 60
MN V L+TGA SGIG ATAL LA + GR ++ +V++ + + + +
Sbjct: 24 MNQPSPVALITGAGSGIGRATALALAADGVTVGALGRTRTEVEEVADEIVG-AGGQAIAL 82
Query: 61 QADLTSEEDTKRIIDTVVKHYQKLNVLVNNAVTGASSGIGAATALHLAKLDAKLAITGRN 120
+AD++ E + + +V + L+++V NA GI A + L
Sbjct: 83 EADVSDELQMRNAVRDLVLKFGHLDIVVANA------GINGVWAP-IDDL---------- 125
Query: 121 VEQLNKVSESCQSVSKNKPLVIQADLTSEEDTKRIIDTVVK------HYQKLNVLVNNAG 174
+ I ++ H + G
Sbjct: 126 ---------------------------KPFEWDETIAVNLRGTFLTLHLTVPYLKQRGGG 158
Query: 175 NIVNVSSVNGLRSF--PGVLAYCVSKAAVDQFTSCTALELASKGVRVNSVNPGVTLTNL- 231
IV VSS+NG R+F PG AY +KAA ALEL +RVN+V PG TN+
Sbjct: 159 AIVVVSSINGTRTFTTPGATAYTATKAAQVAIVQQLALELGKHHIRVNAVCPGAIETNIS 218
Query: 232 --HKNSGIDQQAYQNFLERSKETHALGRVGNPEEVAKAIAFLASDDASFTTGEHLTVDGG 289
K ++ A + + G+ G E+VA+ I FL S+ A TG + +DGG
Sbjct: 219 DNTKLRHEEETAIPVEWPKGQVPITDGQPGRSEDVAELIRFLVSERARHVTGSPVWIDGG 278
Query: 290 RHAM 293
+ +
Sbjct: 279 QGLL 282
>3tox_A Short chain dehydrogenase; structural genomics, PSI-biology, NEW
YORK structural genomi research consortium, nysgrc,
oxidoreductase; HET: NAP; 1.93A {Sinorhizobium meliloti}
Length = 280
Score = 208 bits (533), Expect = 9e-67
Identities = 80/297 (26%), Positives = 119/297 (40%), Gaps = 54/297 (18%)
Query: 3 FTGKVILVTGASSGIGAATALHLAKLDAKLAITGRNVEQLNKVSESCQSVSKNKPLVIQA 62
GK+ +VTGASSGIG A AL A+ AK+ +T RN L ++++ + +
Sbjct: 6 LEGKIAIVTGASSGIGRAAALLFAREGAKVVVTARNGNALAELTDEIAG-GGGEAAALAG 64
Query: 63 DLTSEEDTKRIIDTVVKHYQKLNVLVNNAVTGASSGIGAATALHLAKLDAKLAITGRNVE 122
D+ E + +++ V+ + L+ NNA G A
Sbjct: 65 DVGDEALHEALVELAVRRFGGLDTAFNNA------GALGAMGE----------------- 101
Query: 123 QLNKVSESCQSVSKNKPLVIQADLTSEEDTKRIIDTVVK------HYQKLNVLVNNAGNI 176
S E + +DT + YQ + G++
Sbjct: 102 ---------------------ISSLSVEGWRETLDTNLTSAFLAAKYQVPAIAALGGGSL 140
Query: 177 VNVSSVNG-LRSFPGVLAYCVSKAAVDQFTSCTALELASKGVRVNSVNPGVTLTNLHKNS 235
SS G F GV Y SKA + A+EL ++G+RVN++ PG T T + +
Sbjct: 141 TFTSSFVGHTAGFAGVAPYAASKAGLIGLVQALAVELGARGIRVNALLPGGTDTPANFAN 200
Query: 236 GIDQQAYQNFLERSKETHALGRVGNPEEVAKAIAFLASDDASFTTGEHLTVDGGRHA 292
+ HAL R+ PEE+A+A +LASD ASF TG L DGG
Sbjct: 201 LPGAAP--ETRGFVEGLHALKRIARPEEIAEAALYLASDGASFVTGAALLADGGASV 255
>4e4y_A Short chain dehydrogenase family protein; structural genomics, the
center for structural genomics of I diseases, csgid,
niaid; 1.80A {Francisella tularensis subsp}
Length = 244
Score = 206 bits (528), Expect = 2e-66
Identities = 66/307 (21%), Positives = 108/307 (35%), Gaps = 80/307 (26%)
Query: 2 NFTGKVILVTGASSGIGAATALHLAKLDAKLAITGRNVEQLNKVSESCQSVSKNKPLVIQ 61
+ LVTG S GIG A L + I + S I+
Sbjct: 1 SNAMANYLVTGGSKGIGKAVVELLLQNKNHTVINIDIQQSF----------SAENLKFIK 50
Query: 62 ADLTSEEDTKRIIDTVVKHYQKLNVLVNNAVTGASSGIGAATALHLAKLDAKLAITGRNV 121
ADLT ++D ++D + + + NA GI ++
Sbjct: 51 ADLTKQQDITNVLDIIK--NVSFDGIFLNA------GILIKGSIFD-------------- 88
Query: 122 EQLNKVSESCQSVSKNKPLVIQADLTSEEDTKRIIDT-----------VVKHYQKLNVLV 170
E K+++D + + +
Sbjct: 89 -------------------------IDIESIKKVLDLNVWSSIYFIKGLENNLKV----- 118
Query: 171 NNAGNIVNVSSVNGLRSFPGVLAYCVSKAAVDQFTSCTALELASKGVRVNSVNPGVTLTN 230
+IV S + P AY +SK A+ Q T AL+LA +RVN+V PG T+
Sbjct: 119 --GASIVFNGSDQCFIAKPNSFAYTLSKGAIAQMTKSLALDLAKYQIRVNTVCPGTVDTD 176
Query: 231 L-----HKNSGIDQQAYQNFLERSKETHALGRVGNPEEVAKAIAFLASDDASFTTGEHLT 285
L K + ++ ++ ++ L R+ P+E+A+ + FL SD + F TG +
Sbjct: 177 LYRNLIQKYANNVGISFDEAQKQEEKEFPLNRIAQPQEIAELVIFLLSDKSKFMTGGLIP 236
Query: 286 VDGGRHA 292
+DGG A
Sbjct: 237 IDGGYTA 243
>1zem_A Xylitol dehydrogenase; rossmann fold, dinucleotide-binding domain,
oxidoreductase; HET: NAD; 1.90A {Gluconobacter oxydans}
SCOP: c.2.1.2
Length = 262
Score = 206 bits (527), Expect = 4e-66
Identities = 82/310 (26%), Positives = 123/310 (39%), Gaps = 71/310 (22%)
Query: 1 MNFTGKVILVTGASSGIGAATALHLAKLDAKLAITGRNVEQLNKVSESCQSVSKNKPLVI 60
F GKV LVTGA IG ATAL LA+ +A+ N E L K S + +
Sbjct: 3 KKFNGKVCLVTGAGGNIGLATALRLAEEGTAIALLDMNREALEKAEASVREKGV-EARSY 61
Query: 61 QADLTSEEDTKRIIDTVVKHYQKLNVLVNNAVTGASSGIGAATALHLAKLDAKLAITGRN 120
D+TSEE +D+VV+ + K++ L NNA G A A +
Sbjct: 62 VCDVTSEEAVIGTVDSVVRDFGKIDFLFNNA------GYQGAFAP-VQD----------- 103
Query: 121 VEQLNKVSESCQSVSKNKPLVIQADLTSEEDTKRIIDT-----------VVKHYQKLNVL 169
+D R++ V +
Sbjct: 104 --------------------------YPSDDFARVLTINVTGAFHVLKAVSRQMIT---- 133
Query: 170 VNNAGNIVNVSSVNGLRSFPGVLAYCVSKAAVDQFTSCTALELASKGVRVNSVNPGVTLT 229
N G IVN +S+ G++ P + AY SK A+ T AL+LA +RVN+++PG
Sbjct: 134 -QNYGRIVNTASMAGVKGPPNMAAYGTSKGAIIALTETAALDLAPYNIRVNAISPGYMGP 192
Query: 230 NLHKNSGIDQQAY----------QNFLERSKETHALGRVGNPEEVAKAIAFLASDDASFT 279
++ QA + ++ + + R G+ E+ +AFL DD+SF
Sbjct: 193 GFMWERQVELQAKVGSQYFSTDPKVVAQQMIGSVPMRRYGDINEIPGVVAFLLGDDSSFM 252
Query: 280 TGEHLTVDGG 289
TG +L + GG
Sbjct: 253 TGVNLPIAGG 262
>4egf_A L-xylulose reductase; structural genomics, ssgcid, seattle
structural genomics CEN infectious disease,
oxidoreductase; 2.30A {Mycobacterium smegmatis}
Length = 266
Score = 206 bits (527), Expect = 4e-66
Identities = 79/303 (26%), Positives = 110/303 (36%), Gaps = 64/303 (21%)
Query: 1 MNFTGKVILVTGASSGIGAATALHLAKLDAKLAITGRNVEQLNKVSESCQSVSKNKPLVI 60
+ GK L+TGA+ GIGA A A A+L ++GR+V +L+ + +
Sbjct: 16 LRLDGKRALITGATKGIGADIARAFAAAGARLVLSGRDVSELDAARRALGEQFGTDVHTV 75
Query: 61 QADLTSEEDTKRIIDTVVKHYQKLNVLVNNAVTGASSGIGAATALHLAKLDAKLAITGRN 120
DL + + + + L+VLVNNA GI + +D
Sbjct: 76 AIDLAEPDAPAELARRAAEAFGGLDVLVNNA------GISHPQPV----VD--------- 116
Query: 121 VEQLNKVSESCQSVSKNKPLVIQADLTSEEDTKRIIDT-----------VVKHYQKLNVL 169
T + I V K
Sbjct: 117 --------------------------TDPQLFDATIAVNLRAPALLASAVGKAMVA---- 146
Query: 170 VNNAGNIVNVSSVNGLRSFPGVLAYCVSKAAVDQFTSCTALELASKGVRVNSVNPGVTLT 229
G I+ V+S L P AYC SKA + T A EL G+R NSV P V LT
Sbjct: 147 AGEGGAIITVASAAALAPLPDHYAYCTSKAGLVMATKVLARELGPHGIRANSVCPTVVLT 206
Query: 230 NLHKNSGIDQQAYQNFLERSKETHALGRVGNPEEVAKAIAFLASDDASFTTGEHLTVDGG 289
+ + D+ + R LGR P EV+ A+ +LASD AS G + VDGG
Sbjct: 207 EMGQRVWGDEAKSAPMIAR----IPLGRFAVPHEVSDAVVWLASDAASMINGVDIPVDGG 262
Query: 290 RHA 292
Sbjct: 263 YTM 265
>1hxh_A 3BETA/17BETA-hydroxysteroid dehydrogenase; alpha-beta, rossmann
fold, short-chain dehydrogenase, oxidoreductase; 1.22A
{Comamonas testosteroni} SCOP: c.2.1.2
Length = 253
Score = 205 bits (525), Expect = 7e-66
Identities = 70/299 (23%), Positives = 115/299 (38%), Gaps = 59/299 (19%)
Query: 3 FTGKVILVTGASSGIGAATALHLAKLDAKLAITGRNVEQLNKVSESCQSVSKNKPLVIQA 62
GKV LVTG +SG+G L AK+A + N +++ + + ++
Sbjct: 4 LQGKVALVTGGASGVGLEVVKLLLGEGAKVAFSDINEAAGQQLAAEL----GERSMFVRH 59
Query: 63 DLTSEEDTKRIIDTVVKHYQKLNVLVNNAVTGASSGIGAATALHLAKLDAKLAITGRNVE 122
D++SE D ++ V + LNVLVNNA GI +
Sbjct: 60 DVSSEADWTLVMAAVQRRLGTLNVLVNNA------GILLPGDMET--------------- 98
Query: 123 QLNKVSESCQSVSKNKPLVIQADLTSEEDTKRIIDTVVK------HYQKLNVLVNNAGNI 176
ED R++ + + + G+I
Sbjct: 99 ------------------------GRLEDFSRLLKINTESVFIGCQQG-IAAMKETGGSI 133
Query: 177 VNVSSVNGLRSFPGVLAYCVSKAAVDQFTSCTALELASKG--VRVNSVNPGVTLTNLHKN 234
+N++SV+ Y SKAAV T AL +G +RVNS++P T + +
Sbjct: 134 INMASVSSWLPIEQYAGYSASKAAVSALTRAAALSCRKQGYAIRVNSIHPDGIYTPMMQA 193
Query: 235 SGIDQQAYQNFLERSKETHALGRVGNPEEVAKAIAFLASDDASFTTGEHLTVDGGRHAM 293
S + + + + + + GR PE +A+ + FLASD++S +G L D M
Sbjct: 194 S-LPKGVSKEMVLHDPKLNRAGRAYMPERIAQLVLFLASDESSVMSGSELHADNSILGM 251
>2zat_A Dehydrogenase/reductase SDR family member 4; alpha/beta,
oxidoreductase; HET: NAP; 1.50A {Sus scrofa} PDB:
3o4r_A*
Length = 260
Score = 205 bits (525), Expect = 8e-66
Identities = 74/302 (24%), Positives = 122/302 (40%), Gaps = 65/302 (21%)
Query: 2 NFTGKVILVTGASSGIGAATALHLAKLDAKLAITGRNVEQLNKVSESCQSVSKNKPLVIQ 61
KV LVT ++ GIG A A LA+ A + ++ R E +++ + Q
Sbjct: 11 PLENKVALVTASTDGIGLAIARRLAQDGAHVVVSSRKQENVDRTVATLQG-EGLSVTGTV 69
Query: 62 ADLTSEEDTKRIIDTVVKHYQKLNVLVNNAVTGASSGIGAATALHLAKLDAKLAITGRNV 121
+ ED +R++ V + +++LV+NA + +
Sbjct: 70 CHVGKAEDRERLVAMAVNLHGGVDILVSNA------AVNPFFGNIID------------- 110
Query: 122 EQLNKVSESCQSVSKNKPLVIQADLTSEEDTKRIIDT-----------VVKHYQKLNVLV 170
+EE +I+ VV +K
Sbjct: 111 -------------------------ATEEVWDKILHVNVKATVLMTKAVVPEMEK----- 140
Query: 171 NNAGNIVNVSSVNGLRSFPGVLAYCVSKAAVDQFTSCTALELASKGVRVNSVNPGVTLTN 230
G+++ VSSV FP + Y VSK A+ T A+ELA + +RVN + PG+ TN
Sbjct: 141 RGGGSVLIVSSVGAYHPFPNLGPYNVSKTALLGLTKNLAVELAPRNIRVNCLAPGLIKTN 200
Query: 231 LHKNSGIDQQAYQNFLERSKETHALGRVGNPEEVAKAIAFLASDDASFTTGEHLTVDGGR 290
+ +D+ + E + R+GNPE+ A ++FL S+DAS+ TGE + V GG
Sbjct: 201 FSQVLWMDKARKEYMKES----LRIRRLGNPEDCAGIVSFLCSEDASYITGETVVVGGGT 256
Query: 291 HA 292
+
Sbjct: 257 AS 258
>1ae1_A Tropinone reductase-I; oxidoreductase, tropane alkaloid
biosynthesis, reduction of tropinone to tropine,
short-chain dehydrogenase; HET: NAP; 2.40A {Datura
stramonium} SCOP: c.2.1.2
Length = 273
Score = 206 bits (526), Expect = 9e-66
Identities = 84/303 (27%), Positives = 123/303 (40%), Gaps = 63/303 (20%)
Query: 2 NFTGKVILVTGASSGIGAATALHLAKLDAKLAITGRNVEQLNKVSESCQSVSKNKPLVIQ 61
+ G LVTG S GIG A LA L A++ RN ++L++ E +
Sbjct: 18 SLKGTTALVTGGSKGIGYAIVEELAGLGARVYTCSRNEKELDECLEIWRE-KGLNVEGSV 76
Query: 62 ADLTSEEDTKRIIDTVVKHYQ-KLNVLVNNAVTGASSGIGAATALHLAKLDAKLAITGRN 120
DL S + +++ TV + KLN+LVNNA G+
Sbjct: 77 CDLLSRTERDKLMQTVAHVFDGKLNILVNNA------GV--------------------- 109
Query: 121 VEQLNKVSESCQSVSKNKPLVIQADLTSEEDTKRIIDT-----------VVKHYQKLNVL 169
+K D T E+D I+ T +
Sbjct: 110 --------------VIHKEAK---DFT-EKDYNIIMGTNFEAAYHLSQIAYPLLKA---- 147
Query: 170 VNNAGNIVNVSSVNGLRSFPGVLAYCVSKAAVDQFTSCTALELASKGVRVNSVNPGVTLT 229
+ GN++ +SS+ G + P V Y SK A++Q T A E A +RVNSV PGV LT
Sbjct: 148 -SQNGNVIFLSSIAGFSALPSVSLYSASKGAINQMTKSLACEWAKDNIRVNSVAPGVILT 206
Query: 230 NLHKNSGIDQQAYQNFLERSKETHALGRVGNPEEVAKAIAFLASDDASFTTGEHLTVDGG 289
L + + + ++ +GR G P+EV+ IAFL AS+ TG+ + DGG
Sbjct: 207 PLVETAIKKNPHQKEEIDNFIVKTPMGRAGKPQEVSALIAFLCFPAASYITGQIIWADGG 266
Query: 290 RHA 292
A
Sbjct: 267 FTA 269
>3gvc_A Oxidoreductase, probable short-chain type dehydrogenase/reductase;
ssgcid, decode, niaid, UWPPG, SBRI, structural genomics;
2.45A {Mycobacterium tuberculosis}
Length = 277
Score = 203 bits (520), Expect = 7e-65
Identities = 75/302 (24%), Positives = 110/302 (36%), Gaps = 66/302 (21%)
Query: 3 FTGKVILVTGASSGIGAATALHLAKLDAKLAITGRNVEQLNKVSESCQSVSKNKPLVIQA 62
GKV +VTGA +GIG A A LA + + + + + +
Sbjct: 27 LAGKVAIVTGAGAGIGLAVARRLADEGCHVLCADIDGDAADAAATKI----GCGAAACRV 82
Query: 63 DLTSEEDTKRIIDTVVKHYQKLNVLVNNAVTGASSGIGAATALHLAKLDAKLAITGRNVE 122
D++ E+ ++D V + ++ LV NA G+ +L
Sbjct: 83 DVSDEQQIIAMVDACVAAFGGVDKLVANA------GVVHLASLID--------------- 121
Query: 123 QLNKVSESCQSVSKNKPLVIQADLTSEEDTKRIIDT-----------VVKHYQKLNVLVN 171
T+ ED R+I +
Sbjct: 122 ------------------------TTVEDFDRVIAINLRGAWLCTKHAAPRMIE-----R 152
Query: 172 NAGNIVNVSSVNGLRSFPGVLAYCVSKAAVDQFTSCTALELASKGVRVNSVNPGVTLTNL 231
G IVN+SS+ G + G AY +SKA + Q + TA EL S G+R N++ P T +
Sbjct: 153 GGGAIVNLSSLAGQVAVGGTGAYGMSKAGIIQLSRITAAELRSSGIRSNTLLPAFVDTPM 212
Query: 232 -HKNSGIDQQAYQNFLERSKETHALGRVGNPEEVAKAIAFLASDDASFTTGEHLTVDGGR 290
+ A RS GR+ PEE+A + FL SDDAS TG DGG
Sbjct: 213 QQTAMAMFDGALGAGGARSMIARLQGRMAAPEEMAGIVVFLLSDDASMITGTTQIADGGT 272
Query: 291 HA 292
A
Sbjct: 273 IA 274
>2ae2_A Protein (tropinone reductase-II); oxidoreductase, tropane alkaloid
biosynthesis, reduction of tropinone to pseudotropine;
HET: NAP PTO; 1.90A {Datura stramonium} SCOP: c.2.1.2
PDB: 2ae1_A* 1ipe_A* 1ipf_A*
Length = 260
Score = 203 bits (518), Expect = 8e-65
Identities = 91/305 (29%), Positives = 125/305 (40%), Gaps = 64/305 (20%)
Query: 2 NFTGKVILVTGASSGIGAATALHLAKLDAKLAITGRNVEQLNKVSESCQSVSKNKPLVIQ 61
N G LVTG S GIG LA L A + RN ++LN +S K
Sbjct: 6 NLEGCTALVTGGSRGIGYGIVEELASLGASVYTCSRNQKELNDCLTQWRS-KGFKVEASV 64
Query: 62 ADLTSEEDTKRIIDTVVKHYQ-KLNVLVNNAVTGASSGIGAATALHLAKLDAKLAITGRN 120
DL+S + + +++TV H+ KLN+LVNNA GI
Sbjct: 65 CDLSSRSERQELMNTVANHFHGKLNILVNNA------GI--------------------- 97
Query: 121 VEQLNKVSESCQSVSKNKPLVIQADLTSEEDTKRIIDT-----------VVKHYQKLNVL 169
K D T ED I+ +
Sbjct: 98 --------------VIYKEAK---DYT-VEDYSLIMSINFEAAYHLSVLAHPFLKA---- 135
Query: 170 VNNAGNIVNVSSVNGLRSFPGVLAYCVSKAAVDQFTSCTALELASKGVRVNSVNPGVTLT 229
+ GN+V +SSV+G + P Y +K A+DQ T C A E A +RVN V PGV T
Sbjct: 136 -SERGNVVFISSVSGALAVPYEAVYGATKGAMDQLTRCLAFEWAKDNIRVNGVGPGVIAT 194
Query: 230 NLHKNSGIDQQAYQNFLERSKETHALGRVGNPEEVAKAIAFLASDDASFTTGEHLTVDGG 289
+L + I + L + + AL R+G P+E+A +AFL AS+ TG+ + VDGG
Sbjct: 195 SLVE-MTIQDPEQKENLNKLIDRCALRRMGEPKELAAMVAFLCFPAASYVTGQIIYVDGG 253
Query: 290 RHAMC 294
A C
Sbjct: 254 LMANC 258
>1fmc_A 7 alpha-hydroxysteroid dehydrogenase; short-chain
dehydrogenase/reductase, bIle acid catabolism,
oxidoreductase; HET: CHO NAD; 1.80A {Escherichia coli}
SCOP: c.2.1.2 PDB: 1ahi_A* 1ahh_A*
Length = 255
Score = 202 bits (516), Expect = 2e-64
Identities = 71/300 (23%), Positives = 116/300 (38%), Gaps = 68/300 (22%)
Query: 1 MNFTGKVILVTGASSGIGAATALHLAKLDAKLAITGRNVEQLNKVSESCQSVSKNKPLVI 60
+ GK ++TGA +GIG A+ A A + ++ N + N V + Q + +
Sbjct: 7 LRLDGKCAIITGAGAGIGKEIAITFATAGASVVVSDINADAANHVVDEIQQLG-GQAFAC 65
Query: 61 QADLTSEEDTKRIIDTVVKHYQKLNVLVNNAVTGASSGIGAATALHLAKLDAKLAITGRN 120
+ D+TSE++ + D + K+++LVNNA G
Sbjct: 66 RCDITSEQELSALADFAISKLGKVDILVNNA-----------------------GGGGPK 102
Query: 121 VEQLNKVSESCQSVSKNKPLVIQADLTSEEDTKRIIDT-----------VVKHYQKLNVL 169
+ D +R + V +K
Sbjct: 103 PFDM-----------------------PMADFRRAYELNVFSFFHLSQLVAPEMEK---- 135
Query: 170 VNNAGNIVNVSSVNGLRSFPGVLAYCVSKAAVDQFTSCTALELASKGVRVNSVNPGVTLT 229
N G I+ ++S+ + +Y SKAA A +L K +RVN + PG LT
Sbjct: 136 -NGGGVILTITSMAAENKNINMTSYASSKAAASHLVRNMAFDLGEKNIRVNGIAPGAILT 194
Query: 230 NLHKNSGIDQQAYQNFLERSKETHALGRVGNPEEVAKAIAFLASDDASFTTGEHLTVDGG 289
+ K S I + Q L+ + R+G P+++A A FL S AS+ +G+ LTV GG
Sbjct: 195 DALK-SVITPEIEQKMLQH----TPIRRLGQPQDIANAALFLCSPAASWVSGQILTVSGG 249
>3d3w_A L-xylulose reductase; uronate cycle, short-chain
dehydrogenase/reductase(SDR) superfamily, glucose
metabolism, acetylation, carbohydrate metabolism; HET:
NAP; 1.87A {Homo sapiens} PDB: 1wnt_A* 1pr9_A*
Length = 244
Score = 201 bits (514), Expect = 2e-64
Identities = 75/300 (25%), Positives = 109/300 (36%), Gaps = 73/300 (24%)
Query: 1 MNFTGKVILVTGASSGIGAATALHLAKLDAKLAITGRNVEQLNKVSESCQSVSKNKPLVI 60
+ G+ +LVTGA GIG T L A++ R L+ + C + +
Sbjct: 3 LFLAGRRVLVTGAGKGIGRGTVQALHATGARVVAVSRTQADLDSLVRECPGI-----EPV 57
Query: 61 QADLTSEEDTKRIIDTVVKHYQKLNVLVNNAVTGASSGIGAATALHLAKLDAKLAITGRN 120
DL E T+R + +++LVNNA + L+
Sbjct: 58 CVDLGDWEATERALG----SVGPVDLLVNNA------AVALLQPF----LE--------- 94
Query: 121 VEQLNKVSESCQSVSKNKPLVIQADLTSEEDTKRIIDT-----------VVKHYQKLNVL 169
++E R + V +
Sbjct: 95 --------------------------VTKEAFDRSFEVNLRAVIQVSQIVARGLIA---- 124
Query: 170 VNNAGNIVNVSSVNGLRSFPGVLAYCVSKAAVDQFTSCTALELASKGVRVNSVNPGVTLT 229
G IVNVSS R+ YC +K A+D T ALEL +RVN+VNP V +T
Sbjct: 125 RGVPGAIVNVSSQCSQRAVTNHSVYCSTKGALDMLTKVMALELGPHKIRVNAVNPTVVMT 184
Query: 230 NLHKNSGIDQQAYQNFLERSKETHALGRVGNPEEVAKAIAFLASDDASFTTGEHLTVDGG 289
++ + + D + L R LG+ E V AI FL SD + TTG L V+GG
Sbjct: 185 SMGQATWSDPHKAKTMLNR----IPLGKFAEVEHVVNAILFLLSDRSGMTTGSTLPVEGG 240
>1cyd_A Carbonyl reductase; short-chain dehydrogenase, oxidoreductase; HET:
NAP; 1.80A {Mus musculus} SCOP: c.2.1.2
Length = 244
Score = 201 bits (514), Expect = 3e-64
Identities = 75/303 (24%), Positives = 115/303 (37%), Gaps = 73/303 (24%)
Query: 1 MNFTGKVILVTGASSGIGAATALHLAKLDAKLAITGRNVEQLNKVSESCQSVSKNKPLVI 60
+NF+G LVTGA GIG T L AK+ R L +++ C + +
Sbjct: 3 LNFSGLRALVTGAGKGIGRDTVKALHASGAKVVAVTRTNSDLVSLAKECPGI-----EPV 57
Query: 61 QADLTSEEDTKRIIDTVVKHYQKLNVLVNNAVTGASSGIGAATALHLAKLDAKLAITGRN 120
DL + T++ + +++LVNNA + L+
Sbjct: 58 CVDLGDWDATEKALG----GIGPVDLLVNNA------ALVIMQPF----LE--------- 94
Query: 121 VEQLNKVSESCQSVSKNKPLVIQADLTSEEDTKRIIDT-----------VVKHYQKLNVL 169
++E R V +
Sbjct: 95 --------------------------VTKEAFDRSFSVNLRSVFQVSQMVARDMIN---- 124
Query: 170 VNNAGNIVNVSSVNGLRSFPGVLAYCVSKAAVDQFTSCTALELASKGVRVNSVNPGVTLT 229
G+IVNVSS+ +FP ++ Y +K A+ T A+EL +RVNSVNP V LT
Sbjct: 125 RGVPGSIVNVSSMVAHVTFPNLITYSSTKGAMTMLTKAMAMELGPHKIRVNSVNPTVVLT 184
Query: 230 NLHKNSGIDQQAYQNFLERSKETHALGRVGNPEEVAKAIAFLASDDASFTTGEHLTVDGG 289
++ K D + + ER H L + E+V +I FL SD ++ T+G + VD G
Sbjct: 185 DMGKKVSADPEFARKLKER----HPLRKFAEVEDVVNSILFLLSDRSASTSGGGILVDAG 240
Query: 290 RHA 292
A
Sbjct: 241 YLA 243
>3ai3_A NADPH-sorbose reductase; rossmann-fold, NADPH-dependent reductase,
short chain dehydrogenase/reductase, oxidoreductase;
HET: NAP SOL SOE; 1.80A {Gluconobacter frateurii} PDB:
3ai2_A* 3ai1_A*
Length = 263
Score = 201 bits (514), Expect = 4e-64
Identities = 73/297 (24%), Positives = 129/297 (43%), Gaps = 49/297 (16%)
Query: 1 MNFTGKVILVTGASSGIGAATALHLAKLDAKLAITGRNVEQLNKVSESCQSVSKNKPLVI 60
M +GKV ++TG+SSGIG A A AK A + + R V++L++ + S + + L +
Sbjct: 3 MGISGKVAVITGSSSGIGLAIAEGFAKEGAHIVLVARQVDRLHEAARSLKEKFGVRVLEV 62
Query: 61 QADLTSEEDTKRIIDTVVKHYQKLNVLVNNAVTGASSGIGAATALHLAKLDAKLAITGRN 120
D+ + E ++++V + ++LVNNA G G+ + A +
Sbjct: 63 AVDVATPEGVDAVVESVRSSFGGADILVNNA------GTGSNETIMEAADEKWQF----- 111
Query: 121 VEQLNKVSESCQSVSKNKPLVIQADLTSEEDTKRIIDTVVKHYQKLNVLVNNAGNIVNVS 180
+ + + R+ +V + G I++ +
Sbjct: 112 --------------------YWELLVMA---AVRLARGLVPGMRA-----RGGGAIIHNA 143
Query: 181 SVNGLRSFPGVLAYCVSKAAVDQFTSCTALELASKGVRVNSVNPGVTLT--------NLH 232
S+ ++ Y V+KAA+ F+ A E+ +RVN +NPG+ LT L
Sbjct: 144 SICAVQPLWYEPIYNVTKAALMMFSKTLATEVIKDNIRVNCINPGLILTPDWIKTAKELT 203
Query: 233 KNSGIDQQAYQNFLERSKETHALGRVGNPEEVAKAIAFLASDDASFTTGEHLTVDGG 289
K++G D + Y + E + R +PEE+A FL S+ A+++ G VDGG
Sbjct: 204 KDNGGDWKGYLQ--SVADEHAPIKRFASPEELANFFVFLCSERATYSVGSAYFVDGG 258
>1zk4_A R-specific alcohol dehydrogenase; short chain
reductases/dehydrogenases, magnesium dependence,
oxidoreductase; HET: NAP; 1.00A {Lactobacillus brevis}
SCOP: c.2.1.2 PDB: 1nxq_A* 1zjy_A* 1zjz_A* 1zk0_A*
1zk1_A* 1zk2_A 1zk3_A
Length = 251
Score = 200 bits (512), Expect = 6e-64
Identities = 71/296 (23%), Positives = 121/296 (40%), Gaps = 61/296 (20%)
Query: 3 FTGKVILVTGASSGIGAATALHLAKLDAKLAITGRNVEQLNKVSESCQSVSKNKPLVIQA 62
GKV ++TG + GIG A A + AK+ ITGR+ + K ++S + ++ Q
Sbjct: 4 LDGKVAIITGGTLGIGLAIATKFVEEGAKVMITGRHSDVGEKAAKSVGT--PDQIQFFQH 61
Query: 63 DLTSEEDTKRIIDTVVKHYQKLNVLVNNAVTGASSGIGAATALHLAKLDAKLAITGRNVE 122
D + E+ ++ D K + ++ LVNNA GI ++
Sbjct: 62 DSSDEDGWTKLFDATEKAFGPVSTLVNNA------GIAVNKSVEE--------------- 100
Query: 123 QLNKVSESCQSVSKNKPLVIQADLTSEEDTKRIIDT-------VVKHYQKLNVLVNNAGN 175
T+ + ++++ + + +
Sbjct: 101 ------------------------TTTAEWRKLLAVNLDGVFFGTRLGIQRMKNKGLGAS 136
Query: 176 IVNVSSVNGLRSFPGVLAYCVSKAAVDQFTSCTALELASK--GVRVNSVNPGVTLTNLHK 233
I+N+SS+ G P + AY SK AV + AL+ A K VRVN+V+PG T L
Sbjct: 137 IINMSSIEGFVGDPSLGAYNASKGAVRIMSKSAALDCALKDYDVRVNTVHPGYIKTPLVD 196
Query: 234 NSGIDQQAYQNFLERSKETHALGRVGNPEEVAKAIAFLASDDASFTTGEHLTVDGG 289
+ ++A + +G +G P ++A +LAS+++ F TG VDGG
Sbjct: 197 DLPGAEEA-----MSQRTKTPMGHIGEPNDIAYICVYLASNESKFATGSEFVVDGG 247
>3o38_A Short chain dehydrogenase; tuberculosis, ortholog from A
non-pathogenic dehydrogenase, structural genomics; 1.95A
{Mycobacterium smegmatis}
Length = 266
Score = 200 bits (512), Expect = 1e-63
Identities = 78/296 (26%), Positives = 126/296 (42%), Gaps = 58/296 (19%)
Query: 3 FTGKVILVTGAS-SGIGAATALHLAKLDAKLAITGRNVEQLNKVSESCQSVSKNKPLVIQ 61
GKV+LVT A+ +GIG+ TA A + I+ + +L + + + + +
Sbjct: 20 LKGKVVLVTAAAGTGIGSTTARRALLEGADVVISDYHERRLGETRDQLADLGLGRVEAVV 79
Query: 62 ADLTSEEDTKRIIDTVVKHYQKLNVLVNNAVTGASSGIGAATALHLAKLDAKLAITGRNV 121
D+TS E +I V+ +L+VLVNNA G+G T +
Sbjct: 80 CDVTSTEAVDALITQTVEKAGRLDVLVNNA------GLGGQTPVVD-------------- 119
Query: 122 EQLNKVSESCQSVSKNKPLVIQADLTSEEDTKRIIDT-------VVKHYQKLNVLVNNAG 174
++E+ R+++ + + V++ G
Sbjct: 120 -------------------------MTDEEWDRVLNVTLTSVMRATRAALRYFRGVDHGG 154
Query: 175 NIVNVSSVNGLRSFPGVLAYCVSKAAVDQFTSCTALELASKGVRVNSVNPGVTLTNLHKN 234
IVN +SV G R+ Y +KA V T C+A+E GVR+N+V+P +
Sbjct: 155 VIVNNASVLGWRAQHSQSHYAAAKAGVMALTRCSAIEAVEFGVRINAVSPSIARHKF--- 211
Query: 235 SGIDQQAYQNFLERSKETHALGRVGNPEEVAKAIAFLASDDASFTTGEHLTVDGGR 290
+++ + L+R A GR P EVA IAFLASD +S+ TGE ++V R
Sbjct: 212 --LEKTSSSELLDRLASDEAFGRAAEPWEVAATIAFLASDYSSYMTGEVVSVSSQR 265
>3awd_A GOX2181, putative polyol dehydrogenase; oxidoreductase; 1.80A
{Gluconobacter oxydans}
Length = 260
Score = 200 bits (511), Expect = 1e-63
Identities = 69/302 (22%), Positives = 112/302 (37%), Gaps = 67/302 (22%)
Query: 1 MNFTGKVILVTGASSGIGAATALHLAKLDAKLAITGRNVEQLNKVSESCQSVSKNKPLVI 60
+ +V +VTG + IG A LA+ A++ I + K E + + +
Sbjct: 9 LRLDNRVAIVTGGAQNIGLACVTALAEAGARVIIADLDEAMATKAVEDLRM-EGHDVSSV 67
Query: 61 QADLTSEEDTKRIIDTVVKHYQKLNVLVNNAVTGASSGIGAATALHLAKLDAKLAITGRN 120
D+T+ E + + +V + ++++LV A GI +
Sbjct: 68 VMDVTNTESVQNAVRSVHEQEGRVDILVACA------GICISEVK--------------- 106
Query: 121 VEQLNKVSESCQSVSKNKPLVIQADLTSEEDTKRIIDT-----------VVKHYQKLNVL 169
A+ ++ + +D V + +
Sbjct: 107 -----------------------AEDMTDGQWLKQVDINLNGMFRSCQAVGRIMLE---- 139
Query: 170 VNNAGNIVNVSSVNGL--RSFPGVLAYCVSKAAVDQFTSCTALELASKGVRVNSVNPGVT 227
G IV + S++GL AY SKA V Q+ A E A G+R N+V P
Sbjct: 140 -QKQGVIVAIGSMSGLIVNRPQQQAAYNASKAGVHQYIRSLAAEWAPHGIRANAVAPTYI 198
Query: 228 LTNLHKNSGIDQQAYQNFLERSKETHALGRVGNPEEVAKAIAFLASDDASFTTGEHLTVD 287
T L + + Y ++ +GRVG P+EVA + FLASD AS TG + VD
Sbjct: 199 ETTLTRFGMEKPELYDAWIAG----TPMGRVGQPDEVASVVQFLASDAASLMTGAIVNVD 254
Query: 288 GG 289
G
Sbjct: 255 AG 256
>3uxy_A Short-chain dehydrogenase/reductase SDR; structural genomics,
PSI-biology, NEW YORK structural genomi research
consortium, nysgrc; HET: NAD; 2.10A {Rhodobacter
sphaeroides}
Length = 266
Score = 199 bits (508), Expect = 3e-63
Identities = 72/302 (23%), Positives = 110/302 (36%), Gaps = 74/302 (24%)
Query: 3 FTGKVILVTGASSGIGAATALHLAKLDAKLAITGRNVEQLNKVSESCQSVSKNKPLVIQA 62
F GKV LVTGA+ GIG A L A++A+ R V + L +
Sbjct: 26 FEGKVALVTGAAGGIGGAVVTALRAAGARVAVADRAVAGIAAD------------LHLPG 73
Query: 63 DLTSEEDTKRIIDTVVKHYQKLNVLVNNAVTGASSGIGAATALHLAKLDAKLAITGRNVE 122
DL + V +L+++VNNA G+ + +
Sbjct: 74 DLREAAYADGLPGAVAAGLGRLDIVVNNA------GVISRGRITE--------------- 112
Query: 123 QLNKVSESCQSVSKNKPLVIQADLTSEEDTKRIIDT-----------VVKHYQKLNVLVN 171
T++ D + +
Sbjct: 113 ------------------------TTDADWSLSLGVNVEAPFRICRAAIPLMAA-----A 143
Query: 172 NAGNIVNVSSVNGLRSFPGVLAYCVSKAAVDQFTSCTALELASKGVRVNSVNPGVTLTNL 231
G IVNV+S GLR PG YC++KAA+ T C ++ A +G+R+N+V P T +
Sbjct: 144 GGGAIVNVASCWGLRPGPGHALYCLTKAALASLTQCMGMDHAPQGIRINAVCPNEVNTPM 203
Query: 232 -HKNSGIDQQAYQNFLERSKETHALGRVGNPEEVAKAIAFLASDDASFTTGEHLTVDGGR 290
+ T LGR+ PE++A + FLASD A + G + V+GG+
Sbjct: 204 LRTGFAKRGFDPDRAVAELGRTVPLGRIAEPEDIADVVLFLASDAARYLCGSLVEVNGGK 263
Query: 291 HA 292
Sbjct: 264 AV 265
>1hdc_A 3-alpha, 20 beta-hydroxysteroid dehydrogenase; oxidoreductase; HET:
CBO; 2.20A {Streptomyces exfoliatus} SCOP: c.2.1.2 PDB:
2hsd_A*
Length = 254
Score = 198 bits (507), Expect = 4e-63
Identities = 75/299 (25%), Positives = 119/299 (39%), Gaps = 72/299 (24%)
Query: 3 FTGKVILVTGASSGIGAATALHLAKLDAKLAITGRNVEQLNKVSESCQSVSKNKPLVIQA 62
+GK +++TG + G+GA A A++ + E+ + +
Sbjct: 3 LSGKTVIITGGARGLGAEAARQAVAAGARVVLADVLDEEGAATAREL----GDAARYQHL 58
Query: 63 DLTSEEDTKRIIDTVVKHYQKLNVLVNNAVTGASSGIGAATALHLAKLDAKLAITGRNVE 122
D+T EED +R++ + + ++ LVNNA GI L
Sbjct: 59 DVTIEEDWQRVVAYAREEFGSVDGLVNNA------GISTGMFLET--------------- 97
Query: 123 QLNKVSESCQSVSKNKPLVIQADLTSEEDTKRIIDT-----------VVKHYQKLNVLVN 171
S E +++++ V+ +
Sbjct: 98 ------------------------ESVERFRKVVEINLTGVFIGMKTVIPAMKD-----A 128
Query: 172 NAGNIVNVSSVNGLRSFPGVLAYCVSKAAVDQFTSCTALELASKGVRVNSVNPGVTLTNL 231
G+IVN+SS GL +Y SK V + A+EL + +RVNSV+PG+T T +
Sbjct: 129 GGGSIVNISSAAGLMGLALTSSYGASKWGVRGLSKLAAVELGTDRIRVNSVHPGMTYTPM 188
Query: 232 HKNSGIDQQAYQNFLERSKETHALGRVGN-PEEVAKAIAFLASDDASFTTGEHLTVDGG 289
+GI Q E + +GRVGN P E+A A+ L SD +S+ TG L VDGG
Sbjct: 189 TAETGIRQG------EGNYPNTPMGRVGNEPGEIAGAVVKLLSDTSSYVTGAELAVDGG 241
>1mxh_A Pteridine reductase 2; SDR topology, protein-substrate complex,
oxidoreductase; HET: NAP DHF; 2.20A {Trypanosoma cruzi}
SCOP: c.2.1.2 PDB: 1mxf_A*
Length = 276
Score = 199 bits (508), Expect = 5e-63
Identities = 62/294 (21%), Positives = 111/294 (37%), Gaps = 37/294 (12%)
Query: 4 TGKVILVTGASSGIGAATALHLAKLDAKLAITGR-NVEQLNKVSESCQSVSKNKPLVIQA 62
++TG + IG + A+ L + ++ + R + ++ + ++ +
Sbjct: 10 ECPAAVITGGARRIGHSIAVRLHQQGFRVVVHYRHSEGAAQRLVAELNAARAGSAVLCKG 69
Query: 63 DLTSEED----TKRIIDTVVKHYQKLNVLVNNAVTGASSGIGAATALHLAKLDAKLAITG 118
DL+ + IID + + + +VLVNNA T L A
Sbjct: 70 DLSLSSSLLDCCEDIIDCSFRAFGRCDVLVNNA------SAYYPTPLLPGDDTNGAADAK 123
Query: 119 RNVEQLNKVSESCQSVSKNKPLVIQADLTSEEDTKRIIDTVVKHYQKLNVLVNNAGNIVN 178
Q+ + + ++ + +I + + + ++VN
Sbjct: 124 PIDAQVAE--------------LFGSNAVA---PLFLIRAFARRQGEGGAWRSRNLSVVN 166
Query: 179 VSSVNGLRSFPGVLAYCVSKAAVDQFTSCTALELASKGVRVNSVNPGVTLTNLHKNSGID 238
+ PG Y ++K A+ T ALELA + +RVN+V PG++L
Sbjct: 167 LCDAMTDLPLPGFCVYTMAKHALGGLTRAAALELAPRHIRVNAVAPGLSLLPPAMPQET- 225
Query: 239 QQAYQNFLERSKETHALGR-VGNPEEVAKAIAFLASDDASFTTGEHLTVDGGRH 291
E + LG+ + ++A AIAFL S DA + TG L VDGG
Sbjct: 226 -------QEEYRRKVPLGQSEASAAQIADAIAFLVSKDAGYITGTTLKVDGGLI 272
>3lf2_A Short chain oxidoreductase Q9HYA2; SDR, SCOR, rossmann fold; HET:
NAP; 2.30A {Pseudomonas aeruginosa} PDB: 3lf1_A*
Length = 265
Score = 198 bits (505), Expect = 9e-63
Identities = 70/300 (23%), Positives = 112/300 (37%), Gaps = 48/300 (16%)
Query: 2 NFTGKVILVTGASSGIGAATALHLAKLDAKLAITGRNVEQLNKVSESCQSVSK-NKPLVI 60
+ + V +VTG SSGIG AT L + A +A R+ E+L + + +
Sbjct: 5 DLSEAVAVVTGGSSGIGLATVELLLEAGAAVAFCARDGERLRAAESALRQRFPGARLFAS 64
Query: 61 QADLTSEEDTKRIIDTVVKHYQKLNVLVNNAVTGASSGIGAATALHLAKLDAKLAITGRN 120
D+ + + + ++LVNNA G G + +
Sbjct: 65 VCDVLDALQVRAFAEACERTLGCASILVNNA------GQGRVSTF----AETTD------ 108
Query: 121 VEQLNKVSESCQSVSKNKPLVIQADLTSEEDTKRIIDTVVKHYQKLNVLVNNAGNIVNVS 180
E ++ +Q S + + + IV V+
Sbjct: 109 -EAWSEE--------------LQLKFFS---VIHPVRAFLPQLES-----RADAAIVCVN 145
Query: 181 SVNGLRSFPGVLAYCVSKAAVDQFTSCTALELASKGVRVNSVNPGVTLTNL------HKN 234
S+ + P ++A ++A V A E A KGVRVN + G+ + +
Sbjct: 146 SLLASQPEPHMVATSAARAGVKNLVRSMAFEFAPKGVRVNGILIGLVESGQWRRRFEARE 205
Query: 235 SGIDQQAYQNFLERSKETHALGRVGNPEEVAKAIAFLASDDASFTTGEHLTVDGG--RHA 292
A + LGR+G P E A+AI FLAS +++TTG H+ V GG RHA
Sbjct: 206 ERELDWAQWTAQLARNKQIPLGRLGKPIEAARAILFLASPLSAYTTGSHIDVSGGLSRHA 265
>3zv4_A CIS-2,3-dihydrobiphenyl-2,3-DIOL dehydrogenase; oxidoreductase,
short chain dehydrogenase/oxidoreductase, SD comamonas
testosteroni; 1.80A {Pandoraea pnomenusa} PDB: 2y99_A*
3zv3_A 2y93_A 3zv5_A* 3zv6_A* 1bdb_A*
Length = 281
Score = 198 bits (505), Expect = 1e-62
Identities = 72/299 (24%), Positives = 110/299 (36%), Gaps = 55/299 (18%)
Query: 1 MNFTGKVILVTGASSGIGAATALHLAKLDAKLAITGRNVEQLNKVSESCQSVSKNKPLVI 60
M TG+V L+TG +SG+G A A++A+ ++ E+L ++ + + +
Sbjct: 1 MKLTGEVALITGGASGLGRALVDRFVAEGARVAVLDKSAERLRELEVAHGG----NAVGV 56
Query: 61 QADLTSEEDTKRIIDTVVKHYQKLNVLVNNAVTGASSGIGAATALHLAKLDAKLAITGRN 120
D+ S +D KR + + + K++ L+ NA GI
Sbjct: 57 VGDVRSLQDQKRAAERCLAAFGKIDTLIPNA------GIW-------------------- 90
Query: 121 VEQLNKVSESCQSVSKNKPLVIQADLTSEEDTKRIIDTVVKHY----QK-LNVLVNNAGN 175
+ L + + I VK Y + L LV++ G+
Sbjct: 91 --------------DYSTALADLPEDKIDAAFDDIFHVNVKGYIHAVKACLPALVSSRGS 136
Query: 176 IVNVSSVNGLRSFPGVLAYCVSKAAVDQFTSCTALELASKGVRVNSVNPGVTLTNLHKNS 235
+V S G G Y +K AV A ELA VRVN V PG T+L S
Sbjct: 137 VVFTISNAGFYPNGGGPLYTATKHAVVGLVRQMAFELAPH-VRVNGVAPGGMNTDLRGPS 195
Query: 236 GIDQQAYQN----FLERSKETHALGRVGNPEEVAKAIAFLASDDASF-TTGEHLTVDGG 289
+ + K +GR+ EE A F A+ S TG L DGG
Sbjct: 196 SLGLSEQSISSVPLADMLKSVLPIGRMPALEEYTGAYVFFATRGDSLPATGALLNYDGG 254
>1w6u_A 2,4-dienoyl-COA reductase, mitochondrial precursor; short chain
dehydrogenase, beta- oxidation, NADP, oxidoreductase;
HET: HXC NAP; 1.75A {Homo sapiens} SCOP: c.2.1.2 PDB:
1w73_A* 1w8d_A*
Length = 302
Score = 198 bits (505), Expect = 3e-62
Identities = 64/305 (20%), Positives = 104/305 (34%), Gaps = 67/305 (21%)
Query: 2 NFTGKVILVTGASSGIGAATALHLAKLDAKLAITGRNVEQLNKVSESCQSVSKNKPLVIQ 61
+F GKV +TG +G+G L+ L A+ I R ++ L +E S + NK IQ
Sbjct: 23 SFQGKVAFITGGGTGLGKGMTTLLSSLGAQCVIASRKMDVLKATAEQISSQTGNKVHAIQ 82
Query: 62 ADLTSEEDTKRIIDTVVKHYQKLNVLVNNAVTGASSGIG-AATALHLAKLDAKLAITGRN 120
D+ + + + ++K N+++NNA + L
Sbjct: 83 CDVRDPDMVQNTVSELIKVAGHPNIVINNA------AGNFISPTERL------------- 123
Query: 121 VEQLNKVSESCQSVSKNKPLVIQADLTSEEDTKRIIDTVV-----------KHYQKLNVL 169
S K I D V+ K K
Sbjct: 124 ---------------------------SPNAWKTITDIVLNGTAFVTLEIGKQLIK---- 152
Query: 170 VNNAGNIVNVSSVNGLRSFPGVLAYCVSKAAVDQFTSCTALELASKGVRVNSVNPGVTLT 229
++++++ V+ +KA V+ + A E G+R N + PG T
Sbjct: 153 AQKGAAFLSITTIYAETGSGFVVPSASAKAGVEAMSKSLAAEWGKYGMRFNVIQPGPIKT 212
Query: 230 NL-HKNSGIDQQAYQNFLERSKETHALGRVGNPEEVAKAIAFLASDDASFTTGEHLTVDG 288
+ + R GR+G EE+A AFL SD AS+ G + DG
Sbjct: 213 KGAFSRLDPTGTFEKEMIGRI----PCGRLGTVEELANLAAFLCSDYASWINGAVIKFDG 268
Query: 289 GRHAM 293
G +
Sbjct: 269 GEEVL 273
>3oid_A Enoyl-[acyl-carrier-protein] reductase [NADPH]; fatty acid
synthesis, enoyl-ACP reductases, FABL, rossmann-L NADPH
binding, oxidoreductase; HET: TCL NDP; 1.80A {Bacillus
subtilis} PDB: 3oic_A*
Length = 258
Score = 196 bits (500), Expect = 4e-62
Identities = 65/299 (21%), Positives = 118/299 (39%), Gaps = 67/299 (22%)
Query: 3 FTGKVILVTGASSGIGAATALHLAKLDAKLAIT-GRNVEQLNKVSESCQSVSKNKPLVIQ 61
K LVTG+S G+G A A+ LA+ + I R+ + + +E + + K LV++
Sbjct: 2 EQNKCALVTGSSRGVGKAAAIRLAENGYNIVINYARSKKAALETAEEIEKLGV-KVLVVK 60
Query: 62 ADLTSEEDTKRIIDTVVKHYQKLNVLVNNAVTGASSGIGAATALHLAKLDAKLAITGRNV 121
A++ K + + + + +L+V VNNA G
Sbjct: 61 ANVGQPAKIKEMFQQIDETFGRLDVFVNNA------ASG--------------------- 93
Query: 122 EQLNKVSESCQSVSKNKPLVIQADLTSEEDTKRIIDT-----------VVKHYQKLNVLV 170
+P++ E ++ K +K
Sbjct: 94 --------------VLRPVM----ELEETHWDWTMNINAKALLFCAQEAAKLMEK----- 130
Query: 171 NNAGNIVNVSSVNGLRSFPGVLAYCVSKAAVDQFTSCTALELASKGVRVNSVNPGVTLTN 230
N G+IV++SS+ +R VSKAA++ T A+EL+ K + VN+V+ G T+
Sbjct: 131 NGGGHIVSISSLGSIRYLENYTTVGVSKAALEALTRYLAVELSPKQIIVNAVSGGAIDTD 190
Query: 231 LHKNSGIDQQAYQNFLERSKETHALGRVGNPEEVAKAIAFLASDDASFTTGEHLTVDGG 289
K+ + ++ + + GR+ +++ + FL S A G+ + VDGG
Sbjct: 191 ALKHFPNREDLLEDARQNT----PAGRMVEIKDMVDTVEFLVSSKADMIRGQTIIVDGG 245
>3f1l_A Uncharacterized oxidoreductase YCIK; E. coli, NADP+,; 0.95A
{Escherichia coli K12} PDB: 3f1k_A 3e9q_A* 3f5q_A
3gz4_A* 3f5s_A 3gy0_A* 3iah_A* 3g1t_A
Length = 252
Score = 196 bits (500), Expect = 4e-62
Identities = 65/292 (22%), Positives = 116/292 (39%), Gaps = 55/292 (18%)
Query: 3 FTGKVILVTGASSGIGAATALHLAKLDAKLAITGRNVEQLNKVSESCQSVSKNKPLVIQA 62
++ILVTGAS GIG A+ A+ A + + GRN E+L +V+ + +P
Sbjct: 10 LNDRIILVTGASDGIGREAAMTYARYGATVILLGRNEEKLRQVASHINEETGRQPQWFIL 69
Query: 63 DL--TSEEDTKRIIDTVVKHYQKLNVLVNNAVTGASSGIGAATALHLAKLDAKLAITGRN 120
DL + E+ +++ + +Y +L+ +++NA G+ L ++ +N
Sbjct: 70 DLLTCTSENCQQLAQRIAVNYPRLDGVLHNA------GL----------LGDVCPMSEQN 113
Query: 121 VEQLNKVSESCQSVSKNKPLVIQADLTSEEDTKRIIDTVVKHYQKLNVLVNNAGNIVNVS 180
+ V +Q ++ + T + ++ K ++AG++V S
Sbjct: 114 PQVWQDV--------------MQVNVNA---TFMLTQALLPLLLK-----SDAGSLVFTS 151
Query: 181 SVNGLRSFPGVLAYCVSKAAVDQFTSCTALELASKGVRVNSVNPGVTLTNLHKNSGIDQQ 240
S G + AY SK A + A E +RVN +NPG T T +
Sbjct: 152 SSVGRQGRANWGAYAASKFATEGMMQVLADEYQQ-RLRVNCINPGGTRTAMRA------S 204
Query: 241 AYQNFLERSKETHALGRVGNPEEVAKAIAFLASDDASFTTGEHLTVDGGRHA 292
A+ T ++ P ++ +L DD+ TG GR
Sbjct: 205 AF--------PTEDPQKLKTPADIMPLYLWLMGDDSRRKTGMTFDAQPGRKP 248
>1e7w_A Pteridine reductase; dihydrofolate reductase, shortchain
dehydrogenase, methotrexate resistance, oxidoreductase;
HET: NDP MTX; 1.75A {Leishmania major} SCOP: c.2.1.2
PDB: 1w0c_A* 1e92_A* 2bf7_A* 2bfa_A* 2bfm_A* 2bfo_A*
2bfp_A* 2p8k_A* 3h4v_A* 2xox_A 1p33_A*
Length = 291
Score = 197 bits (502), Expect = 6e-62
Identities = 59/310 (19%), Positives = 107/310 (34%), Gaps = 46/310 (14%)
Query: 1 MNFTGKVILVTGASSGIGAATALHLAKLDAKLAIT-GRNVEQLNKVSESCQSVSKNKPLV 59
T V LVTGA+ +G + A L + + R+ + N +S + + N +
Sbjct: 5 TAPTVPVALVTGAAKRLGRSIAEGLHAEGYAVCLHYHRSAAEANALSATLNARRPNSAIT 64
Query: 60 IQADLTSEEDT-----------------KRIIDTVVKHYQKLNVLVNNAVTGASSGIGAA 102
+QADL++ ++ H+ + +VLVNNA
Sbjct: 65 VQADLSNVATAPVSGADGSAPVTLFTRCAELVAACYTHWGRCDVLVNNA------SSFYP 118
Query: 103 TALHLAKLDAKLAITGRNVEQLNKVSESCQSVSKNKPLVIQADLTSEEDTKRIIDTVVKH 162
T L + +++ + ++ + +I
Sbjct: 119 TPLLRNDE-----------DGHEPCVGDREAMETATADLFGSNAIA---PYFLIKAFAHR 164
Query: 163 YQKLNVLV-NNAGNIVNVSSVNGLRSFPGVLAYCVSKAAVDQFTSCTALELASKGVRVNS 221
+I+N+ + G Y ++K A++ T ALELA +RVN
Sbjct: 165 VAGTPAKHRGTNYSIINMVDAMTNQPLLGYTIYTMAKGALEGLTRSAALELAPLQIRVNG 224
Query: 222 VNPGVTLTNLHKNSGIDQQAYQNFLERSKETHALGRVGNPEEVAKAIAFLASDDASFTTG 281
V PG+++ + + + R + EV+ + FL S A + TG
Sbjct: 225 VGPGLSVLVDDMPPAVWEGH-------RSKVPLYQRDSSAAEVSDVVIFLCSSKAKYITG 277
Query: 282 EHLTVDGGRH 291
+ VDGG
Sbjct: 278 TCVKVDGGYS 287
>3gaf_A 7-alpha-hydroxysteroid dehydrogenase; seattle structural genomics
center for infectious disease, ssgcid, oxidoreductase,
structural genomics; 2.20A {Brucella melitensis}
Length = 256
Score = 195 bits (498), Expect = 7e-62
Identities = 70/300 (23%), Positives = 115/300 (38%), Gaps = 68/300 (22%)
Query: 1 MNFTGKVILVTGASSGIGAATALHLAKLDAKLAITGRNVEQLNKVSESCQSVSKNKPLVI 60
+ V +VTGA++GIG A A AK A + +T E V+ + + K + +
Sbjct: 8 FHLNDAVAIVTGAAAGIGRAIAGTFAKAGASVVVTDLKSEGAEAVAAAIRQAG-GKAIGL 66
Query: 61 QADLTSEEDTKRIIDTVVKHYQKLNVLVNNAVTGASSGIGAATALHLAKLDAKLAITGRN 120
+ ++T E+ + +I + + K+ VLVNNA G G +
Sbjct: 67 ECNVTDEQHREAVIKAALDQFGKITVLVNNA------GGGGPKPFDM------------- 107
Query: 121 VEQLNKVSESCQSVSKNKPLVIQADLTSEEDTKRIIDT-----------VVKHYQKLNVL 169
D + H QK
Sbjct: 108 ---------------------------PMSDFEWAFKLNLFSLFRLSQLAAPHMQK---- 136
Query: 170 VNNAGNIVNVSSVNGLRSFPGVLAYCVSKAAVDQFTSCTALELASKGVRVNSVNPGVTLT 229
G I+N+SS+ G + + +Y SKAAV+ T A ++ G+RVN++ PG T
Sbjct: 137 -AGGGAILNISSMAGENTNVRMASYGSSKAAVNHLTRNIAFDVGPMGIRVNAIAPGAIKT 195
Query: 230 NLHKNSGIDQQAYQNFLERSKETHALGRVGNPEEVAKAIAFLASDDASFTTGEHLTVDGG 289
+ + + LGR+G +++A A FL S A++ +G+ LTV GG
Sbjct: 196 DALATVLTPEI-----ERAMLKHTPLGRLGEAQDIANAALFLCSPAAAWISGQVLTVSGG 250
>3imf_A Short chain dehydrogenase; structural genomics, infectious D center
for structural genomics of infectious diseases,
oxidoreductase, csgid; HET: MSE; 1.99A {Bacillus
anthracis str}
Length = 257
Score = 195 bits (498), Expect = 1e-61
Identities = 72/298 (24%), Positives = 126/298 (42%), Gaps = 59/298 (19%)
Query: 3 FTGKVILVTGASSGIGAATALHLAKLDAKLAITGRNVEQLNKVSESCQSVSKNKPLVIQA 62
KV+++TG SSG+G A AK A++ ITGR E+L + + + L +Q
Sbjct: 4 MKEKVVIITGGSSGMGKGMATRFAKEGARVVITGRTKEKLEEAKLEIEQ-FPGQILTVQM 62
Query: 63 DLTSEEDTKRIIDTVVKHYQKLNVLVNNAVTGASSGIGAATALHLAKLDAKLAITGRNVE 122
D+ + +D +++I+ + + + ++++L+NNA
Sbjct: 63 DVRNTDDIQKMIEQIDEKFGRIDILINNA------AGNFICPAE---------------- 100
Query: 123 QLNKVSESCQSVSKNKPLVIQADLTSEEDTKRIIDTVVK-------HYQKLNVLVNNAGN 175
DL S +I+ V+ K + GN
Sbjct: 101 ----------------------DL-SVNGWNSVINIVLNGTFYCSQAIGKYWIEKGIKGN 137
Query: 176 IVNVSSVNGLRSFPGVLAYCVSKAAVDQFTSCTALELASK-GVRVNSVNPGVTLTNL-HK 233
I+N+ + + PGV+ +KA V T A+E K G+RVN++ PG
Sbjct: 138 IINMVATYAWDAGPGVIHSAAAKAGVLAMTKTLAVEWGRKYGIRVNAIAPGPIERTGGAD 197
Query: 234 NSGIDQQAYQNFLERSKETHALGRVGNPEEVAKAIAFLASDDASFTTGEHLTVDGGRH 291
I ++ + ++ LGR+G PEE+A +L SD+A++ G +T+DGG+H
Sbjct: 198 KLWISEEMAKRTIQSV----PLGRLGTPEEIAGLAYYLCSDEAAYINGTCMTMDGGQH 251
>4e6p_A Probable sorbitol dehydrogenase (L-iditol 2-dehyd; NAD(P)-binding,
structural genomics, PSI-biology; HET: MSE; 2.10A
{Sinorhizobium meliloti} PDB: 1k2w_A
Length = 259
Score = 195 bits (497), Expect = 1e-61
Identities = 61/304 (20%), Positives = 105/304 (34%), Gaps = 69/304 (22%)
Query: 2 NFTGKVILVTGASSGIGAATALHLAKLDAKLAITGRNVEQLNKVSESCQSVSKNKPLVIQ 61
GK L+TG++ GIG A A + A +AI ++E+ + + +Q
Sbjct: 5 RLEGKSALITGSARGIGRAFAEAYVREGATVAIADIDIERARQAAAEI----GPAAYAVQ 60
Query: 62 ADLTSEEDTKRIIDTVVKHYQKLNVLVNNAVTGASSGIGAATALHLAKLDAKLAITGRNV 121
D+T ++ I V+H L++LVNNA + + ++
Sbjct: 61 MDVTRQDSIDAAIAATVEHAGGLDILVNNA------ALFDLAPI----VE---------- 100
Query: 122 EQLNKVSESCQSVSKNKPLVIQADLTSEEDTKRIIDT-----------VVKHYQKLNVLV 170
+ E +++ +
Sbjct: 101 -------------------------ITRESYEKLFAINVAGTLFTLQAAARQMIAQG--- 132
Query: 171 NNAGNIVNVSSVNGLRSFPGVLAYCVSKAAVDQFTSCTALELASKGVRVNSVNPGVTLTN 230
G I+N++S G R V YC +KAAV T L+L + VN++ PGV
Sbjct: 133 -RGGKIINMASQAGRRGEALVAIYCATKAAVISLTQSAGLDLIKHRINVNAIAPGVVDGE 191
Query: 231 L-----HKNSGIDQQAYQNFLERSKETHALGRVGNPEEVAKAIAFLASDDASFTTGEHLT 285
+ + + E GR+G E++ FLAS ++ + +
Sbjct: 192 HWDGVDALFARYENRPRGEKKRLVGEAVPFGRMGTAEDLTGMAIFLASAESDYIVSQTYN 251
Query: 286 VDGG 289
VDGG
Sbjct: 252 VDGG 255
>4e3z_A Putative oxidoreductase protein; PSI-biology, structural genomics,
protein structure initiati nysgrc,oxidoreductase; 2.00A
{Rhizobium etli}
Length = 272
Score = 195 bits (497), Expect = 2e-61
Identities = 82/289 (28%), Positives = 128/289 (44%), Gaps = 43/289 (14%)
Query: 4 TGKVILVTGASSGIGAATALHLAKLDAKLAIT-GRNVEQLNKVSESCQSVSKNKPLVIQA 62
V+LVTG S GIGAA A+ ++ + N E + V + S + + I
Sbjct: 25 DTPVVLVTGGSRGIGAAVCRLAARQGWRVGVNYAANREAADAVVAAITE-SGGEAVAIPG 83
Query: 63 DLTSEEDTKRIIDTVVKHYQKLNVLVNNAVTGASSGIGAATALHLAKLDAKLAITGRNVE 122
D+ + D + V + + +L+ LVNNA GI + ++ E
Sbjct: 84 DVGNAADIAAMFSAVDRQFGRLDGLVNNA------GIVDYPQR-VDEMSV---------E 127
Query: 123 QLNKVSESCQSVSKNKPLVIQADLTSEEDTKRIIDTVVKHYQKLNVLVNNAGNIVNVSSV 182
++ ++ ++ ++T V+ +L G IVNVSS+
Sbjct: 128 RIERM--------------LRVNVTGSILCAA---EAVRRMSRLYS--GQGGAIVNVSSM 168
Query: 183 NGLRSFPGVLA-YCVSKAAVDQFTSCTALELASKGVRVNSVNPGVTLTNLHKNSGIDQQA 241
+ Y SKAA+D FT A E+A++G+RVN+V PG+ T+LH + G+ +A
Sbjct: 169 AAILGSATQYVDYAASKAAIDTFTIGLAREVAAEGIRVNAVRPGIIETDLHASGGLPDRA 228
Query: 242 YQNFLERSKETHALGRVGNPEEVAKAIAFLASDDASFTTGEHLTVDGGR 290
+ + R G PEEVA AI +L S AS+ TG L V GGR
Sbjct: 229 -----REMAPSVPMQRAGMPEEVADAILYLLSPSASYVTGSILNVSGGR 272
>2qhx_A Pteridine reductase 1; oxidoreductase, short-chain
dehydrogenase/reductase, trypanosomatid, pterin salvage,
drug resistance; HET: NAP FE1; 2.61A {Leishmania major}
SCOP: c.2.1.2
Length = 328
Score = 196 bits (500), Expect = 3e-61
Identities = 59/310 (19%), Positives = 107/310 (34%), Gaps = 46/310 (14%)
Query: 1 MNFTGKVILVTGASSGIGAATALHLAKLDAKLAIT-GRNVEQLNKVSESCQSVSKNKPLV 59
T V LVTGA+ +G + A L + + R+ + N +S + + N +
Sbjct: 42 TAPTVPVALVTGAAKRLGRSIAEGLHAEGYAVCLHYHRSAAEANALSATLNARRPNSAIT 101
Query: 60 IQADLTSEEDT-----------------KRIIDTVVKHYQKLNVLVNNAVTGASSGIGAA 102
+QADL++ ++ H+ + +VLVNNA
Sbjct: 102 VQADLSNVATAPVSGADGSAPVTLFTRCAELVAACYTHWGRCDVLVNNA------SSFYP 155
Query: 103 TALHLAKLDAKLAITGRNVEQLNKVSESCQSVSKNKPLVIQADLTSEEDTKRIIDTVVKH 162
T L + +++ + ++ + +I
Sbjct: 156 TPLLRNDE-----------DGHEPCVGDREAMETATADLFGSNAIA---PYFLIKAFAHR 201
Query: 163 YQKLNVLV-NNAGNIVNVSSVNGLRSFPGVLAYCVSKAAVDQFTSCTALELASKGVRVNS 221
+I+N+ + G Y ++K A++ T ALELA +RVN
Sbjct: 202 VAGTPAKHRGTNYSIINMVDAMTNQPLLGYTIYTMAKGALEGLTRSAALELAPLQIRVNG 261
Query: 222 VNPGVTLTNLHKNSGIDQQAYQNFLERSKETHALGRVGNPEEVAKAIAFLASDDASFTTG 281
V PG+++ + + + R + EV+ + FL S A + TG
Sbjct: 262 VGPGLSVLVDDMPPAVWEGH-------RSKVPLYQRDSSAAEVSDVVIFLCSSKAKYITG 314
Query: 282 EHLTVDGGRH 291
+ VDGG
Sbjct: 315 TCVKVDGGYS 324
>1nff_A Putative oxidoreductase RV2002; directed evolution, GFP, SDR,
hydroxysteroid dehydrogenase, structural genomics, PSI;
HET: NAD; 1.80A {Mycobacterium tuberculosis} SCOP:
c.2.1.2 PDB: 1nfq_A* 1nfr_A*
Length = 260
Score = 194 bits (495), Expect = 3e-61
Identities = 77/298 (25%), Positives = 117/298 (39%), Gaps = 76/298 (25%)
Query: 3 FTGKVILVTGASSGIGAATALHLAKLDAKLAITGRNVEQLNKVSESCQSVSKNKPLVIQA 62
TGKV LV+G + G+GA+ + AK+ E+ ++ + +
Sbjct: 5 LTGKVALVSGGARGMGASHVRAMVAEGAKVVFGDILDEEGKAMAAEL----ADAARYVHL 60
Query: 63 DLTSEEDTKRIIDTVVKHYQKLNVLVNNAVTGASSGIGAATALHLAKLDAKLAITGRNVE 122
D+T K +DT V + L+VLVNNA GI +
Sbjct: 61 DVTQPAQWKAAVDTAVTAFGGLHVLVNNA------GILNIGTIED--------------- 99
Query: 123 QLNKVSESCQSVSKNKPLVIQADLTSEEDTKRIIDT-----------VVKHYQKLNVLVN 171
+ + +RI+D VVK ++
Sbjct: 100 ------------------------YALTEWQRILDVNLTGVFLGIRAVVKPMKE-----A 130
Query: 172 NAGNIVNVSSVNGLRSFPGVLAYCVSKAAVDQFTSCTALELASKGVRVNSVNPGVTLTNL 231
G+I+N+SS+ GL Y +K AV T TALEL G+RVNS++PG+ T +
Sbjct: 131 GRGSIINISSIEGLAGTVACHGYTATKFAVRGLTKSTALELGPSGIRVNSIHPGLVKTPM 190
Query: 232 HKNSGIDQQAYQNFLERSKETHALGRVGNPEEVAKAIAFLASDDASFTTGEHLTVDGG 289
+ ALGR P EV+ + +LASD++S++TG VDGG
Sbjct: 191 TDW-----------VPEDIFQTALGRAAEPVEVSNLVVYLASDESSYSTGAEFVVDGG 237
>2bgk_A Rhizome secoisolariciresinol dehydrogenase; oxidoreductase; 1.6A
{Podophyllum peltatum} SCOP: c.2.1.2 PDB: 2bgl_A*
2bgm_A*
Length = 278
Score = 194 bits (496), Expect = 3e-61
Identities = 67/294 (22%), Positives = 119/294 (40%), Gaps = 53/294 (18%)
Query: 3 FTGKVILVTGASSGIGAATALHLAKLDAKLAITGRNVEQLNKVSESCQSVSKNKPLVIQA 62
KV ++TG + GIG TA + AK+ I + KV + S + +
Sbjct: 14 LQDKVAIITGGAGGIGETTAKLFVRYGAKVVIADIADDHGQKVCNNIGS--PDVISFVHC 71
Query: 63 DLTSEEDTKRIIDTVVKHYQKLNVLVNNAVTGASSGIGAATALHLAKLDAKLAITGRNVE 122
D+T +ED + ++DT + + KL+++ N G+ + T + +
Sbjct: 72 DVTKDEDVRNLVDTTIAKHGKLDIMFGNV------GVLSTTPYSILEAG----------- 114
Query: 123 QLNKVSESCQSVSKNKPLVIQADLTSEEDTKRIIDTVVK------HYQKLNVLVNNAGNI 176
ED KR++D V + ++ G+I
Sbjct: 115 --------------------------NEDFKRVMDINVYGAFLVAKHAARVMIPAKKGSI 148
Query: 177 VNVSSVNGLRSFPGV-LAYCVSKAAVDQFTSCTALELASKGVRVNSVNPGVTLTNLHKNS 235
V +S++ + GV Y +K AV T+ EL G+RVN V+P + + L +
Sbjct: 149 VFTASISSFTAGEGVSHVYTATKHAVLGLTTSLCTELGEYGIRVNCVSPYIVASPLLTDV 208
Query: 236 GIDQQAYQNFLERSKETHALGRVGNPEEVAKAIAFLASDDASFTTGEHLTVDGG 289
+ L + G + E+VA A+A+LA D++ + +G +L +DGG
Sbjct: 209 FGVDSSRVEELAHQA-ANLKGTLLRAEDVADAVAYLAGDESKYVSGLNLVIDGG 261
>1yxm_A Pecra, peroxisomal trans 2-enoyl COA reductase; perioxisomes, fatty
acid synthesis, short-chain dehydrogenases/reductases,
structural genomics; HET: ADE; 1.90A {Homo sapiens}
SCOP: c.2.1.2
Length = 303
Score = 195 bits (497), Expect = 4e-61
Identities = 73/304 (24%), Positives = 118/304 (38%), Gaps = 68/304 (22%)
Query: 3 FTGKVILVTGASSGIGAATALHLAKLDAKLAITGRNVEQLNKV----SESCQSVSKNKPL 58
G+V +VTG ++GIG A L +L + + I R +E+L + + + +
Sbjct: 16 LQGQVAIVTGGATGIGKAIVKELLELGSNVVIASRKLERLKSAADELQANLPPTKQARVI 75
Query: 59 VIQADLTSEEDTKRIIDTVVKHYQKLNVLVNNAVTGASSGIGAATALHLAKLDAKLAITG 118
IQ ++ +EE+ ++ + + + K+N LVNN
Sbjct: 76 PIQCNIRNEEEVNNLVKSTLDTFGKINFLVNNG-----------------------GGQ- 111
Query: 119 RNVEQLNKVSESCQSVSKNKPLVIQADLTSEEDTKRIIDT-----------VVKHYQKLN 167
P + S + +++T V + K
Sbjct: 112 -----------------FLSPA---EHI-SSKGWHAVLETNLTGTFYMCKAVYSSWMK-- 148
Query: 168 VLVNNAGNIVNVSSVNGLRSFPGVLAYCVSKAAVDQFTSCTALELASKGVRVNSVNPGVT 227
+ G+IVN+ FP + ++A V T ALE A G+R+N V PGV
Sbjct: 149 ---EHGGSIVNIIVP-TKAGFPLAVHSGAARAGVYNLTKSLALEWACSGIRINCVAPGVI 204
Query: 228 LTNLHKNSGIDQQAYQNFLERSKETHALGRVGNPEEVAKAIAFLASDDASFTTGEHLTVD 287
+ Q+F E S + R+G PEEV+ + FL S ASF TG+ + VD
Sbjct: 205 YSQT--AVENYGSWGQSFFEGSFQKIPAKRIGVPEEVSSVVCFLLSPAASFITGQSVDVD 262
Query: 288 GGRH 291
GGR
Sbjct: 263 GGRS 266
>3u5t_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics,
PSI-biology, NEW YORK structural genomi research
consortium, nysgrc; 2.40A {Sinorhizobium meliloti}
Length = 267
Score = 193 bits (494), Expect = 4e-61
Identities = 75/301 (24%), Positives = 117/301 (38%), Gaps = 70/301 (23%)
Query: 1 MNFTGKVILVTGASSGIGAATALHLAKLDAKLAIT-GRNVEQLNKVSESCQSVSKNKPLV 59
M T KV +VTGAS GIGAA A LA + I +V+ ++ + K L
Sbjct: 23 MMETNKVAIVTGASRGIGAAIAARLASDGFTVVINYAGKAAAAEEVAGKIEA-AGGKALT 81
Query: 60 IQADLTSEEDTKRIIDTVVKHYQKLNVLVNNAVTGASSGIGAATALHLAKLDAKLAITGR 119
QAD++ +R+ T + + ++VLVNNA GI T +
Sbjct: 82 AQADVSDPAAVRRLFATAEEAFGGVDVLVNNA------GIMPLTTI-------------- 121
Query: 120 NVEQLNKVSESCQSVSKNKPLVIQADLTSEEDTKRIIDT-----------VVKHYQKLNV 168
T + R+I + +
Sbjct: 122 -------------------------AETGDAVFDRVIAVNLKGTFNTLREAAQRLRV--- 153
Query: 169 LVNNAGNIVNVSSVNGLRSFPGVLAYCVSKAAVDQFTSCTALELASKGVRVNSVNPGVTL 228
G I+N+S+ P Y +KA V+ T + EL + + VN+V PG T
Sbjct: 154 ----GGRIINMSTSQVGLLHPSYGIYAAAKAGVEAMTHVLSKELRGRDITVNAVAPGPTA 209
Query: 229 TNLHKNSGIDQQAYQNFLERSKETHALGRVGNPEEVAKAIAFLASDDASFTTGEHLTVDG 288
T+L D+ +R + L R+G P+++A A+AFLA D ++ G+ L +G
Sbjct: 210 TDLFLEGKSDEVR-----DRFAKLAPLERLGTPQDIAGAVAFLAGPDGAWVNGQVLRANG 264
Query: 289 G 289
G
Sbjct: 265 G 265
>3edm_A Short chain dehydrogenase; structural genomics, oxidoreductase,
PSI-2, P structure initiative; 2.30A {Agrobacterium
tumefaciens str}
Length = 259
Score = 193 bits (492), Expect = 6e-61
Identities = 81/289 (28%), Positives = 120/289 (41%), Gaps = 49/289 (16%)
Query: 3 FTGKVILVTGASSGIGAATALHLAKLDAKLAIT-GRNVEQLNKVSESCQSVSKNKPLVIQ 61
FT + I+V GA IG A A+ A+ A + +T E + + + L I+
Sbjct: 6 FTNRTIVVAGAGRDIGRACAIRFAQEGANVVLTYNGAAEGAATAVAEIEKLGR-SALAIK 64
Query: 62 ADLTSEEDTKRIIDTVVKHYQKLNVLVNNAVTGASSGIGAATALHLAKLDAKLAITGRNV 121
ADLT+ + + I + +++ LV+ A G A +A++D
Sbjct: 65 ADLTNAAEVEAAISAAADKFGEIHGLVHVA------GGLIARKT-IAEMDE--------- 108
Query: 122 EQLNKVSESCQSVSKNKPLVIQADLTSEEDTKRIIDTVVKHYQKLNVLVNNAGNIVNVSS 181
++V + +LTS T + K G IV SS
Sbjct: 109 AFWHQV--------------LDVNLTS---LFLTAKTALPKMAK-------GGAIVTFSS 144
Query: 182 VNGLR-SFPGVLAYCVSKAAVDQFTSCTALELASKGVRVNSVNPGVTLTNLHKNSGIDQQ 240
G PG LAY SK AV FT A E+ +RVN+V PG+ T H +
Sbjct: 145 QAGRDGGGPGALAYATSKGAVMTFTRGLAKEVGP-KIRVNAVCPGMISTTFHDTFTKPEV 203
Query: 241 AYQNFLERSKETHALGRVGNPEEVAKAIAFLASDDASFTTGEHLTVDGG 289
ER +L R G+ E+VA +AFLASDDA++ TG ++GG
Sbjct: 204 R-----ERVAGATSLKREGSSEDVAGLVAFLASDDAAYVTGACYDINGG 247
>2ag5_A DHRS6, dehydrogenase/reductase (SDR family) member 6;
protein-CO-factor complex, structural genomics,
structural G consortium, SGC, oxidoreductase; HET: NAD;
1.84A {Homo sapiens} SCOP: c.2.1.2
Length = 246
Score = 192 bits (491), Expect = 7e-61
Identities = 73/301 (24%), Positives = 116/301 (38%), Gaps = 71/301 (23%)
Query: 1 MN-FTGKVILVTGASSGIGAATALHLAKLDAKLAITGRNVEQLNKVSESCQSVSKNKPLV 59
M GKVI++T A+ GIG A AL A+ AK+ T N +L ++ +
Sbjct: 1 MGRLDGKVIILTAAAQGIGQAAALAFAREGAKVIATDINESKLQELEKY------PGIQT 54
Query: 60 IQADLTSEEDTKRIIDTVVKHYQKLNVLVNNAVTGASSGIGAATALHLAKLDAKLAITGR 119
D+T ++ ID ++L+VL N A G +
Sbjct: 55 RVLDVTKKKQ----IDQFANEVERLDVLFNVA------GFVHHGTVLD------------ 92
Query: 120 NVEQLNKVSESCQSVSKNKPLVIQADLTSEEDTKRIIDTVVK------HYQKLNVLVNNA 173
E+D ++ V+ +L +
Sbjct: 93 ---------------------------CEEKDWDFSMNLNVRSMYLMIKAFLPKMLAQKS 125
Query: 174 GNIVNVSSVNG-LRSFPGVLAYCVSKAAVDQFTSCTALELASKGVRVNSVNPGVTLT--- 229
GNI+N+SSV ++ Y +KAAV T A + +G+R N V PG T
Sbjct: 126 GNIINMSSVASSVKGVVNRCVYSTTKAAVIGLTKSVAADFIQQGIRCNCVCPGTVDTPSL 185
Query: 230 -NLHKNSGIDQQAYQNFLERSKETHALGRVGNPEEVAKAIAFLASDDASFTTGEHLTVDG 288
+ G ++A +FL+R GR EE+A +LASD++++ TG + +DG
Sbjct: 186 QERIQARGNPEEARNDFLKR----QKTGRFATAEEIAMLCVYLASDESAYVTGNPVIIDG 241
Query: 289 G 289
G
Sbjct: 242 G 242
>4fc7_A Peroxisomal 2,4-dienoyl-COA reductase; SDR/rossmann fold,
peroxisomal beta-oxidation, oxidoreductas; HET: NAP COA;
1.84A {Homo sapiens} PDB: 4fc6_A*
Length = 277
Score = 193 bits (492), Expect = 1e-60
Identities = 67/305 (21%), Positives = 115/305 (37%), Gaps = 66/305 (21%)
Query: 3 FTGKVILVTGASSGIGAATALHLAKLDAKLAITGRNVEQLNKVSESCQSVSKNKPLVIQA 62
KV +TG SGIG A + I R++ ++ + + + L +
Sbjct: 25 LRDKVAFITGGGSGIGFRIAEIFMRHGCHTVIASRSLPRVLTAARKLAGATGRRCLPLSM 84
Query: 63 DLTSEEDTKRIIDTVVKHYQKLNVLVNNAVTGASSGIGAATALHLAKLDAKLAITGRNVE 122
D+ + +D +K + ++++L+N A A L A
Sbjct: 85 DVRAPPAVMAAVDQALKEFGRIDILINCA---------AGNFLCPA-------------G 122
Query: 123 QLNKVSESCQSVSKNKPLVIQADLTSEEDTKRIIDT-----------VVKHYQKLNVLVN 171
L S K ++D + + + + +
Sbjct: 123 AL-----------------------SFNAFKTVMDIDTSGTFNVSRVLYEKFFR-----D 154
Query: 172 NAGNIVNVSSVNGLRSFPGVLAYCVSKAAVDQFTSCTALELASKGVRVNSVNPG-VTLTN 230
+ G IVN+++ G R + +KAAVD T A+E + +RVNS+ PG ++ T
Sbjct: 155 HGGVIVNITATLGNRGQALQVHAGSAKAAVDAMTRHLAVEWGPQNIRVNSLAPGPISGTE 214
Query: 231 LHKNSGIDQQAYQNFLERSKETHALGRVGNPEEVAKAIAFLASDDASFTTGEHLTVDGGR 290
+ G Q + + S L R+GN E+A ++ +LAS AS+ TG L DGG
Sbjct: 215 GLRRLGGPQASLSTKVTAS----PLQRLGNKTEIAHSVLYLASPLASYVTGAVLVADGGA 270
Query: 291 HAMCP 295
P
Sbjct: 271 WLTFP 275
>1oaa_A Sepiapterin reductase; tetrahydrobiopterin, oxidoreductase; HET:
NAP; 1.25A {Mus musculus} SCOP: c.2.1.2 PDB: 1nas_A*
1sep_A* 1z6z_A*
Length = 259
Score = 192 bits (490), Expect = 1e-60
Identities = 65/296 (21%), Positives = 116/296 (39%), Gaps = 52/296 (17%)
Query: 3 FTGKVILVTGASSGIGAATALHLAKL---DAKLAITGRNVEQLNKVSESCQSVSKN-KPL 58
V ++TGAS G G A A LA+L + + ++ R+ L ++ E + + K +
Sbjct: 4 LGCAVCVLTGASRGFGRALAPQLARLLSPGSVMLVSARSESMLRQLKEELGAQQPDLKVV 63
Query: 59 VIQADLTSEEDTKRIIDTVVK----HYQKLNVLVNNAVTGASSGIGAATALHLAKLDAKL 114
+ ADL +E +R++ V + + +L+NNA T G LA+++
Sbjct: 64 LAAADLGTEAGVQRLLSAVRELPRPEGLQRLLLINNAATLGDVSKGFLNVNDLAEVNNYW 123
Query: 115 AITGRNVEQLNKVSESCQSVSKNKPLVIQADLTSEEDTKRIIDTVVKHYQKLNVLVNNAG 174
A+ N+ S+ LTS + +Q +
Sbjct: 124 AL---NLT----------SM---------LCLTSG---------TLNAFQDSP---GLSK 149
Query: 175 NIVNVSSVNGLRSFPGVLAYCVSKAAVDQFTSCTALELASKGVRVNSVNPGVTLTNLHK- 233
+VN+SS+ L+ + G YC KAA D A E VRV S PG ++ +
Sbjct: 150 TVVNISSLCALQPYKGWGLYCAGKAARDMLYQVLAAE--EPSVRVLSYAPGPLDNDMQQL 207
Query: 234 --NSGIDQQAYQNFLERSKETHALGRVGNPEEVAKAIAFLASDDASFTTGEHLTVD 287
+ D + ++ + G + + A+ + L D +F +G H+
Sbjct: 208 ARETSKDPELRSKL----QKLKSDGALVDCGTSAQKLLGLLQKD-TFQSGAHVDFY 258
>3ak4_A NADH-dependent quinuclidinone reductase; SDR, (R)-3-quinuclidinol,
chiral alcohol, oxidoreductase; HET: NAD; 2.00A
{Agrobacterium tumefaciens}
Length = 263
Score = 191 bits (488), Expect = 3e-60
Identities = 77/305 (25%), Positives = 113/305 (37%), Gaps = 69/305 (22%)
Query: 1 MNFTGKVILVTGASSGIGAATALHLAKLDAKLAITGRNVEQLNKVSESCQSVSKNKPLVI 60
+ +G+ +VTG S GIGAA A L K A +AI +V V +N +
Sbjct: 8 FDLSGRKAIVTGGSKGIGAAIARALDKAGATVAIADLDVMAAQAVVAGL----ENGGFAV 63
Query: 61 QADLTSEEDTKRIIDTVVKHYQKLNVLVNNAVTGASSGIGAATALHLAKLDAKLAITGRN 120
+ D+T + + ++L NA G+
Sbjct: 64 EVDVTKRASVDAAMQKAIDALGGFDLLCANA------GV--------------------- 96
Query: 121 VEQLNKVSESCQSVSKNKPLVIQADLTSEEDTKRIIDT-----------VVKHYQKLNVL 169
S +P V D+T +E+ D +H+ N
Sbjct: 97 --------------STMRPAV---DIT-DEEWDFNFDVNARGVFLANQIACRHFLASN-- 136
Query: 170 VNNAGNIVNVSSVNGLRSFPGVLAYCVSKAAVDQFTSCTALELASKGVRVNSVNPGVTLT 229
G IVN +S+ P + Y SK AV +T A E+A K +RVN V PG T
Sbjct: 137 --TKGVIVNTASLAAKVGAPLLAHYSASKFAVFGWTQALAREMAPKNIRVNCVCPGFVKT 194
Query: 230 NLHKNSGIDQQAYQNFL-----ERSKETHALGRVGNPEEVAKAIAFLASDDASFTTGEHL 284
+ + I + + LGR+ PE+VA + FLASD A F TG+ +
Sbjct: 195 AMQEREIIWEAELRGMTPEAVRAEYVSLTPLGRIEEPEDVADVVVFLASDAARFMTGQGI 254
Query: 285 TVDGG 289
V GG
Sbjct: 255 NVTGG 259
>3v2g_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics,
PSI-biology, protein structure initiati nysgrc; 2.30A
{Sinorhizobium meliloti}
Length = 271
Score = 191 bits (488), Expect = 5e-60
Identities = 81/297 (27%), Positives = 128/297 (43%), Gaps = 57/297 (19%)
Query: 1 MNFTGKVILVTGASSGIGAATALHLAKLDAKLAIT-GRNVEQLNKVSESCQSVSKNKPLV 59
++ GK VTG S GIGAA A LA A +A+T E+ V + + + +
Sbjct: 27 ISLAGKTAFVTGGSRGIGAAIAKRLALEGAAVALTYVNAAERAQAVVSEIEQ-AGGRAVA 85
Query: 60 IQADLTSEEDTKRIIDTVVKHYQKLNVLVNNAVTGASSGIGAATALH---LAKLDAKLAI 116
I+AD E ++ I V+ L++LVN+A GI + L +A D +A+
Sbjct: 86 IRADNRDAEAIEQAIRETVEALGGLDILVNSA------GIWHSAPLEETTVADFDEVMAV 139
Query: 117 TGRNVEQLNKVSESCQSVSKNKPLVIQADLTSEEDTKRIIDTVVKHYQKLNVLVNNAGNI 176
N + + I++ +H G I
Sbjct: 140 ---NF--------------RAPFVAIRS--------------ASRHLGD-------GGRI 161
Query: 177 VNVSS-VNGLRSFPGVLAYCVSKAAVDQFTSCTALELASKGVRVNSVNPGVTLTNLHKNS 235
+ + S + L +PG+ Y SKAA+ T A +L +G+ VN V+PG T T+++
Sbjct: 162 ITIGSNLAELVPWPGISLYSASKAALAGLTKGLARDLGPRGITVNIVHPGSTDTDMNPAD 221
Query: 236 GIDQQAYQNFLERSKETHALGRVGNPEEVAKAIAFLASDDASFTTGEHLTVDGGRHA 292
G + E +E A G G P+++A +A+LA F TG LT+DGG +A
Sbjct: 222 G-------DHAEAQRERIATGSYGEPQDIAGLVAWLAGPQGKFVTGASLTIDGGANA 271
>3r3s_A Oxidoreductase; structural genomics, csgid, center for structural
genomics O infectious diseases, 3-layer(ABA) sandwich,
rossmann fold; HET: NAD; 1.25A {Salmonella enterica
subsp}
Length = 294
Score = 191 bits (488), Expect = 7e-60
Identities = 67/301 (22%), Positives = 113/301 (37%), Gaps = 69/301 (22%)
Query: 4 TGKVILVTGASSGIGAATALHLAKLDAKLAITGRNVEQL--NKVSESCQSVSKNKPLVIQ 61
+ LVTG SGIG A A+ A+ A +AI E+ +V + + K +++
Sbjct: 48 KDRKALVTGGDSGIGRAAAIAYAREGADVAINYLPAEEEDAQQVKALIEECGR-KAVLLP 106
Query: 62 ADLTSEEDTKRIIDTVVKHYQKLNVLVNNAVTGASSGIGAATALHLAKLDAKLAITGRNV 121
DL+ E + ++ + L++L A G A +
Sbjct: 107 GDLSDESFARSLVHKAREALGGLDILALVA------GKQTAIP---------------EI 145
Query: 122 EQLNKVSESCQSVSKNKPLVIQADLTSEEDTKRIIDT-----------VVKHYQKLNVLV 170
+ L + E ++ + K
Sbjct: 146 KDL-----------------------TSEQFQQTFAVNVFALFWITQEAIPLLPK----- 177
Query: 171 NNAGNIVNVSSVNGLRSFPGVLAYCVSKAAVDQFTSCTALELASKGVRVNSVNPGVTLTN 230
+I+ SS+ + P +L Y +KAA+ ++ A ++A KG+RVN V PG T
Sbjct: 178 --GASIITTSSIQAYQPSPHLLDYAATKAAILNYSRGLAKQVAEKGIRVNIVAPGPIWTA 235
Query: 231 LHKNSGIDQQAYQNFLERSKETHALGRVGNPEEVAKAIAFLASDDASFTTGEHLTVDGGR 290
L + G Q F +++ + R G P E+A +LAS ++S+ T E V GG
Sbjct: 236 LQISGGQTQDKIPQFGQQT----PMKRAGQPAELAPVYVYLASQESSYVTAEVHGVCGGE 291
Query: 291 H 291
H
Sbjct: 292 H 292
>2fwm_X 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase; enterobactin,
rossman fold, chorismate metabolism, short-CHA
oxidoreductase, tetramer; 2.00A {Escherichia coli}
Length = 250
Score = 190 bits (484), Expect = 7e-60
Identities = 79/304 (25%), Positives = 115/304 (37%), Gaps = 76/304 (25%)
Query: 1 MNFTGKVILVTGASSGIGAATALHLAKLDAKLAITGRNVEQLNKVSESCQSVSKNKPLVI 60
M+F+GK + VTGA GIG ATAL + AK+ + Q
Sbjct: 3 MDFSGKNVWVTGAGKGIGYATALAFVEAGAKVTGFDQAFTQEQY-----------PFATE 51
Query: 61 QADLTSEEDTKRIIDTVVKHYQKLNVLVNNAVTGASSGIGAATALHLAKLDAKLAITGRN 120
D+ ++ ++ ++L+ LVN A GI A
Sbjct: 52 VMDVADAAQVAQVCQRLLAETERLDALVNAA------GILRMGAT--------------- 90
Query: 121 VEQLNKVSESCQSVSKNKPLVIQADLTSEEDTKRIIDT-----------VVKHYQKLNVL 169
D S+ED ++ + +++
Sbjct: 91 ------------------------DQLSKEDWQQTFAVNVGGAFNLFQQTMNQFRR---- 122
Query: 170 VNNAGNIVNVSSVNGLRSFPGVLAYCVSKAAVDQFTSCTALELASKGVRVNSVNPGVTLT 229
G IV V+S G+ AY SKAA+ LELA GVR N V+PG T T
Sbjct: 123 -QRGGAIVTVASDAAHTPRIGMSAYGASKAALKSLALSVGLELAGSGVRCNVVSPGSTDT 181
Query: 230 ----NLHKNSGIDQQAYQNFLERSKETHALGRVGNPEEVAKAIAFLASDDASFTTGEHLT 285
L + ++Q + F E+ K LG++ P+E+A I FLASD AS T + +
Sbjct: 182 DMQRTLWVSDDAEEQRIRGFGEQFKLGIPLGKIARPQEIANTILFLASDLASHITLQDIV 241
Query: 286 VDGG 289
VDGG
Sbjct: 242 VDGG 245
>3afn_B Carbonyl reductase; alpha/beta/alpha, rossmann-fold,
oxidoreductase; HET: NAP; 1.63A {Sphingomonas SP} PDB:
3afm_A*
Length = 258
Score = 190 bits (485), Expect = 9e-60
Identities = 69/291 (23%), Positives = 112/291 (38%), Gaps = 43/291 (14%)
Query: 2 NFTGKVILVTGASSGIGAATALHLAKLDAKLAITGRNVEQ-LNKVSESCQSVSKNKPLVI 60
+ GK +L+TG+S GIG ATA A+ AK+ + GR +++ S ++
Sbjct: 4 DLKGKRVLITGSSQGIGLATARLFARAGAKVGLHGRKAPANIDETIASMRADGG-DAAFF 62
Query: 61 QADLTSEEDTKRIIDTVVKHYQKLNVLVNNAVTGASSGIGAATALHLAKLDAKLAITGRN 120
ADL + E ++++D V + ++VL+NNA G +
Sbjct: 63 AADLATSEACQQLVDEFVAKFGGIDVLINNA--------GGLVGRKPL-PEIDD------ 107
Query: 121 VEQLNKVSESCQSVSKNKPLVIQADLTSEEDTKRIIDTVVKHYQKLNVLVNNAGNIVNVS 180
+ V + A++ S + H +++
Sbjct: 108 -TFYDAV--------------MDANIRS---VVMTTKFALPHLAAAAKASGQTSAVISTG 149
Query: 181 SVNGLRS-FPGVLAYCVSKAAVDQFTSCTALELASKGVRVNSVNPGVTLTNLHKNSGIDQ 239
S+ G PG Y +KA + GVR N V+PG T H + D
Sbjct: 150 SIAGHTGGGPGAGLYGAAKAFLHNVHKNWVDFHTKDGVRFNIVSPGTVDTAFHADKTQDV 209
Query: 240 QAYQNFLERSKETHALGRVGNPEEVAKAIAFLASDDAS-FTTGEHLTVDGG 289
+ +R +GR G EE+A A F AS AS + TG+ L ++GG
Sbjct: 210 R------DRISNGIPMGRFGTAEEMAPAFLFFASHLASGYITGQVLDINGG 254
>1xq1_A Putative tropinone reducatse; structural genomics, protein
structure initiative, CESG, AT1 reductively methylated
protein; 2.10A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB:
2q45_A
Length = 266
Score = 189 bits (483), Expect = 2e-59
Identities = 77/304 (25%), Positives = 116/304 (38%), Gaps = 68/304 (22%)
Query: 1 MNFTGKVILVTGASSGIGAATALHLAKLDAKLAITGRNVEQLNKVSESCQSVSKNKPLVI 60
+ K +LVTG + GIG A A A + RN +LN+ Q +
Sbjct: 10 WSLKAKTVLVTGGTKGIGHAIVEEFAGFGAVIHTCARNEYELNECLSKWQK-KGFQVTGS 68
Query: 61 QADLTSEEDTKRIIDTVVKHY-QKLNVLVNNAVTGASSGIGAATALHLAKLDAKLAITGR 119
D + + ++++ TV + KL++L+NN G
Sbjct: 69 VCDASLRPEREKLMQTVSSMFGGKLDILINNL------GA-------------------- 102
Query: 120 NVEQLNKVSESCQSVSKNKPLVIQADLTSEEDTKRIIDT-----------VVKHYQKLNV 168
++KP + D T ED I T +
Sbjct: 103 ---------------IRSKPTL---DYT-AEDFSFHISTNLESAYHLSQLAHPLLKA--- 140
Query: 169 LVNNAGNIVNVSSVNGLRSFPGVLAYCVSKAAVDQFTSCTALELASKGVRVNSVNPGVTL 228
+ GNI+ +SS+ G+ S Y +K A++Q A E AS G+R N+V P V
Sbjct: 141 --SGCGNIIFMSSIAGVVSASVGSIYSATKGALNQLARNLACEWASDGIRANAVAPAVIA 198
Query: 229 TNLHKNSGIDQQAYQNFLERSKETHALGRVGNPEEVAKAIAFLASDDASFTTGEHLTVDG 288
T L + D+ F + LGR G PEEV+ +AFL AS+ TG+ + VDG
Sbjct: 199 TPLAEAVYDDE-----FKKVVISRKPLGRFGEPEEVSSLVAFLCMPAASYITGQTICVDG 253
Query: 289 GRHA 292
G
Sbjct: 254 GLTV 257
>1zmo_A Halohydrin dehalogenase; haloalcohol dehalogenase, short- chain
dehydrogenase/reductase family, lyase; 2.00A
{Arthrobacter SP}
Length = 244
Score = 188 bits (480), Expect = 3e-59
Identities = 45/296 (15%), Positives = 93/296 (31%), Gaps = 68/296 (22%)
Query: 6 KVILVTGASSGIGAATALHLAKLDAKLAITGRNVEQL-NKVSESCQSVSKNKPLVIQADL 64
+ LVT A G A L + + + + ++
Sbjct: 2 VIALVTHARHFAGPAAVEALTQDGYTVVCHDASFADAAERQRFESENP--------GTIA 53
Query: 65 TSEEDTKRIIDTVVKHYQKLNVLVNNAVTGASSGIGAATALHLAKLDAKLAITGRNVEQL 124
+E+ +R++D ++H + ++ +V+N I
Sbjct: 54 LAEQKPERLVDATLQHGEAIDTIVSND------YIPRPM--------------------- 86
Query: 125 NKVSESCQSVSKNKPLVIQADLTSEEDTKRIIDT-----------VVKHYQKLNVLVNNA 173
+ + TSE D +++ + + +
Sbjct: 87 ---------------NRLPLEGTSEADIRQMFEALSIFPILLLQSAIAPLRA-----AGG 126
Query: 174 GNIVNVSSVNGLRSFPGVLAYCVSKAAVDQFTSCTALELASKGVRVNSVNPGVTLTNLHK 233
+++ ++S G + Y ++AA A L+ G+ + ++ P +
Sbjct: 127 ASVIFITSSVGKKPLAYNPLYGPARAATVALVESAAKTLSRDGILLYAIGPNFFNNPTYF 186
Query: 234 NSGIDQQAYQNFLERSKETHALGRVGNPEEVAKAIAFLASDDASFTTGEHLTVDGG 289
+ D + ER LGR+G P+E+ I FLAS A+ G+ GG
Sbjct: 187 PTS-DWENNPELRERVDRDVPLGRLGRPDEMGALITFLASRRAAPIVGQFFAFTGG 241
>2x9g_A PTR1, pteridine reductase; short chain dehydrogenase,
oxidoreductase; HET: NAP LYA; 1.10A {Trypanosoma brucei
brucei} PDB: 2x9n_A* 2x9v_A* 3bmc_A* 3bmd_A* 3bme_A*
3bmf_A* 3bmg_A* 3bmh_A* 3bmi_A* 3bmj_A* 3bmk_A* 3bml_A*
3bmm_A* 3bmn_A* 3bmo_A* 3bmq_A* 3bmr_A* 3gn1_A* 3gn2_A*
3jq6_A* ...
Length = 288
Score = 189 bits (483), Expect = 3e-59
Identities = 68/302 (22%), Positives = 119/302 (39%), Gaps = 40/302 (13%)
Query: 1 MNFTGKVILVTGASSGIGAATALHLAKLDAKLAITGR-NVEQLNKVSESCQSVSKNKPLV 59
+ +VTGA+ IG A A+ L + ++ I + E +++ N +V
Sbjct: 19 SHMEAPAAVVTGAAKRIGRAIAVKLHQTGYRVVIHYHNSAEAAVSLADELNKERSNTAVV 78
Query: 60 IQADLTSEE----DTKRIIDTVVKHYQKLNVLVNNAVTGASSGIGAATALHLAKLDAKLA 115
QADLT+ + II++ + + + +VLVNNA T L +
Sbjct: 79 CQADLTNSNVLPASCEEIINSCFRAFGRCDVLVNNA------SAFYPTPLVQGDHEDNSN 132
Query: 116 ITGRNVEQLNKVSESCQSVSKNKPLVIQADLTSEEDTKRIIDTVVKHYQKLNVLV-NNAG 174
Q+ ++ I + + + + + + N ++
Sbjct: 133 GKTVE-TQVAEL--------------IGTNAIA---PFLLTMSFAQRQKGTNPNCTSSNL 174
Query: 175 NIVNVSSVNGLRSFPGVLAYCVSKAAVDQFTSCTALELASKGVRVNSVNPGVTLTNLHKN 234
+IVN+ + Y + K A+ T ALELA G+RVN V PGV+L +
Sbjct: 175 SIVNLCDAMVDQPCMAFSLYNMGKHALVGLTQSAALELAPYGIRVNGVAPGVSLLPVAMG 234
Query: 235 SGIDQQAYQNFLERSKETHALGR-VGNPEEVAKAIAFLASDDASFTTGEHLTVDGGRHAM 293
+ ++ + LGR + E++A A+ FL S A + TG + VDGG +
Sbjct: 235 --------EEEKDKWRRKVPLGRREASAEQIADAVIFLVSGSAQYITGSIIKVDGGLS-L 285
Query: 294 CP 295
Sbjct: 286 VH 287
>3qiv_A Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR protein]
reductase; structural genomics; 2.25A {Mycobacterium
avium subsp}
Length = 253
Score = 188 bits (480), Expect = 4e-59
Identities = 67/301 (22%), Positives = 109/301 (36%), Gaps = 67/301 (22%)
Query: 1 MNFTGKVILVTGASSGIGAATALHLAKLDAKLAITGRNVEQLNKVSESCQSVSKNKPLVI 60
M F KV +VTG+ GIG A A LA+ A + + N E V++ + + +
Sbjct: 5 MRFENKVGIVTGSGGGIGQAYAEALAREGAAVVVADINAEAAEAVAKQIVADG-GTAISV 63
Query: 61 QADLTSEEDTKRIIDTVVKHYQKLNVLVNNAVTGASSGIGAATALHLAKLDAKLAITGRN 120
D++ E K + D + + ++ LVNNA I
Sbjct: 64 AVDVSDPESAKAMADRTLAEFGGIDYLVNNA------AIFGGM----------------- 100
Query: 121 VEQLNKVSESCQSVSKNKPLVIQADLTSEEDTKRIIDT-----------VVKHYQKLNVL 169
K L+ E K+ + V K K
Sbjct: 101 ---------------KLDFLL----TIDPEYYKKFMSVNLDGALWCTRAVYKKMTK---- 137
Query: 170 VNNAGNIVNVSSVNGLRSFPGVLAYCVSKAAVDQFTSCTALELASKGVRVNSVNPGVTLT 229
G IVN SS Y ++K ++ T + EL + +R+N++ PG T
Sbjct: 138 -RGGGAIVNQSSTAAWL---YSNYYGLAKVGINGLTQQLSRELGGRNIRINAIAPGPIDT 193
Query: 230 NLHKNSGIDQQAYQNFLERSKETHALGRVGNPEEVAKAIAFLASDDASFTTGEHLTVDGG 289
+ ++ + L R+G P+++ FL SD+AS+ TG+ VDGG
Sbjct: 194 EA-----NRTTTPKEMVDDIVKGLPLSRMGTPDDLVGMCLFLLSDEASWITGQIFNVDGG 248
Query: 290 R 290
+
Sbjct: 249 Q 249
>3is3_A 17BETA-hydroxysteroid dehydrogenase; short chain dehydrogenase/REDU
SDR, fungi, oxidoreductase; HET: GOL; 1.48A
{Cochliobolus lunatus} PDB: 3qwf_A* 3qwh_A* 3qwi_A*
3itd_A
Length = 270
Score = 187 bits (478), Expect = 1e-58
Identities = 72/297 (24%), Positives = 119/297 (40%), Gaps = 56/297 (18%)
Query: 4 TGKVILVTGASSGIGAATALHLAKLDAKLAIT-GRNVEQLNKVSESCQSVSKNKPLVIQA 62
GKV LVTG+ GIGAA A+HL +L AK+ + + + KV +++ + I+A
Sbjct: 17 DGKVALVTGSGRGIGAAVAVHLGRLGAKVVVNYANSTKDAEKVVSEIKALGS-DAIAIKA 75
Query: 63 DLTSEEDTKRIIDTVVKHYQKLNVLVNNAVTGASSGIGAATALH---LAKLDAKLAITGR 119
D+ + ++ D V H+ L++ V+N+ G+ + L + D ++
Sbjct: 76 DIRQVPEIVKLFDQAVAHFGHLDIAVSNS------GVVSFGHLKDVTEEEFDRVFSL--- 126
Query: 120 NVEQLNKVSESCQSVSKNKPLVIQADLTSEEDTKRIIDTVVKHYQKLNVLVNNAGNIVNV 179
N + + V + +H + G IV
Sbjct: 127 NT--------------RGQFFVARE--------------AYRHLTE-------GGRIVLT 151
Query: 180 SSVNGLR-SFPGVLAYCVSKAAVDQFTSCTALELASKGVRVNSVNPGVTLTNLHKNSGID 238
SS S P Y SK AVD F + + K + VN+V PG T+T++
Sbjct: 152 SSNTSKDFSVPKHSLYSGSKGAVDSFVRIFSKDCGDKKITVNAVAPGGTVTDMFHEVSHH 211
Query: 239 QQAYQN------FLERSKETHALGRVGNPEEVAKAIAFLASDDASFTTGEHLTVDGG 289
+ + L R G P++VA + FL S + + G+ LT+DGG
Sbjct: 212 YIPNGTSYTAEQRQQMAAHASPLHRNGWPQDVANVVGFLVSKEGEWVNGKVLTLDGG 268
>3a28_C L-2.3-butanediol dehydrogenase; chiral substrate recognition,
oxidoreductase; HET: NAD; 2.00A {Brevibacterium
saccharolyticum}
Length = 258
Score = 186 bits (476), Expect = 2e-58
Identities = 79/303 (26%), Positives = 130/303 (42%), Gaps = 68/303 (22%)
Query: 5 GKVILVTGASSGIGAATALHLAKLDAKLAIT--GRNVEQLNKVSESCQSVSKNKPLVIQA 62
KV +VTG + GIG + LA +A+ + EQ + + ++ K + +
Sbjct: 2 SKVAMVTGGAQGIGRGISEKLAADGFDIAVADLPQQEEQAAETIKLIEAAD-QKAVFVGL 60
Query: 63 DLTSEEDTKRIIDTVVKHYQKLNVLVNNAVTGASSGIGAATALHLAKLDAKLAITGRNVE 122
D+T + + ID + +VLVNNA GI
Sbjct: 61 DVTDKANFDSAIDEAAEKLGGFDVLVNNA------GI----------------------- 91
Query: 123 QLNKVSESCQSVSKNKPLVIQADLTSEEDTKRIIDT-----------VVKHYQKLNVLVN 171
++ KPL+ ++T EED K+I + + +L
Sbjct: 92 ------------AQIKPLL---EVT-EEDLKQIYSVNVFSVFFGIQAASRKFDELG---- 131
Query: 172 NAGNIVNVSSVNGLRSFPGVLAYCVSKAAVDQFTSCTALELASKGVRVNSVNPGVTLTNL 231
G I+N +S+ ++ FP + AY +K AV T A ELA KG VN+ PG+ T +
Sbjct: 132 VKGKIINAASIAAIQGFPILSAYSTTKFAVRGLTQAAAQELAPKGHTVNAYAPGIVGTGM 191
Query: 232 -----HKNSGIDQQAYQNFLERSKETHALGRVGNPEEVAKAIAFLASDDASFTTGEHLTV 286
+ S I+ + + + ALGR PE+VA ++FLAS+++++ TG+ + V
Sbjct: 192 WEQIDAELSKINGKPIGENFKEYSSSIALGRPSVPEDVAGLVSFLASENSNYVTGQVMLV 251
Query: 287 DGG 289
DGG
Sbjct: 252 DGG 254
>1geg_A Acetoin reductase; SDR family, oxidoreductase; HET: GLC NAD; 1.70A
{Klebsiella pneumoniae} SCOP: c.2.1.2
Length = 256
Score = 186 bits (476), Expect = 2e-58
Identities = 71/300 (23%), Positives = 113/300 (37%), Gaps = 66/300 (22%)
Query: 6 KVILVTGASSGIGAATALHLAKLDAKLAITGRNVEQLNKVSESCQSVSKNKPLVIQADLT 65
KV LVTGA GIG A AL L K +AI N V+ + ++ D++
Sbjct: 3 KVALVTGAGQGIGKAIALRLVKDGFAVAIADYNDATAKAVASEINQAG-GHAVAVKVDVS 61
Query: 66 SEEDTKRIIDTVVKHYQKLNVLVNNAVTGASSGIGAATALHLAKLDAKLAITGRNVEQLN 125
+ ++ K +V+VNNA G+
Sbjct: 62 DRDQVFAAVEQARKTLGGFDVIVNNA------GV-------------------------- 89
Query: 126 KVSESCQSVSKNKPLVIQADLTSEEDTKRIIDT-----------VVKHYQKLNVLVNNAG 174
+ + P+ +T E ++ + V+ ++K + G
Sbjct: 90 ---------APSTPIE---SIT-PEIVDKVYNINVKGVIWGIQAAVEAFKKEG----HGG 132
Query: 175 NIVNVSSVNGLRSFPGVLAYCVSKAAVDQFTSCTALELASKGVRVNSVNPGVTLTNL--- 231
I+N S G P + Y SK AV T A +LA G+ VN PG+ T +
Sbjct: 133 KIINACSQAGHVGNPELAVYSSSKFAVRGLTQTAARDLAPLGITVNGYCPGIVKTPMWAE 192
Query: 232 --HKNSGIDQQAYQNFLERSKETHALGRVGNPEEVAKAIAFLASDDASFTTGEHLTVDGG 289
+ S + + LGR+ PE+VA +++LAS D+ + TG+ L +DGG
Sbjct: 193 IDRQVSEAAGKPLGYGTAEFAKRITLGRLSEPEDVAACVSYLASPDSDYMTGQSLLIDGG 252
>1g0o_A Trihydroxynaphthalene reductase; protein-NADPH-active site
inhibitor complex, dinucleotide binding fold,
oxidoreductase; HET: NDP PYQ; 1.70A {Magnaporthe grisea}
SCOP: c.2.1.2 PDB: 1doh_A* 1g0n_A* 1ybv_A*
Length = 283
Score = 187 bits (478), Expect = 2e-58
Identities = 68/300 (22%), Positives = 122/300 (40%), Gaps = 57/300 (19%)
Query: 2 NFTGKVILVTGASSGIGAATALHLAKLDAKLAIT-GRNVEQLNKVSESCQSVSKNKPLVI 60
+ GKV LVTGA GIG A+ L + K+ + + E +V + + +
Sbjct: 26 SLEGKVALVTGAGRGIGREMAMELGRRGCKVIVNYANSTESAEEVVAAIKKNGS-DAACV 84
Query: 61 QADLTSEEDTKRIIDTVVKHYQKLNVLVNNAVTGASSGIGAATALH---LAKLDAKLAIT 117
+A++ ED R+ + VK + KL+++ +N+ G+ + + + D I
Sbjct: 85 KANVGVVEDIVRMFEEAVKIFGKLDIVCSNS------GVVSFGHVKDVTPEEFDRVFTI- 137
Query: 118 GRNVEQLNKVSESCQSVSKNKPLVIQADLTSEEDTKRIIDTVVKHYQKLNVLVNNAGNIV 177
N + + V + KH + G ++
Sbjct: 138 --NT--------------RGQFFVARE--------------AYKHLEI-------GGRLI 160
Query: 178 NVSSVNGLR-SFPGVLAYCVSKAAVDQFTSCTALELASKGVRVNSVNPGVTLTNLHKNSG 236
+ S+ G + P Y SK A++ F C A+++A K + VN V PG T+++
Sbjct: 161 LMGSITGQAKAVPKHAVYSGSKGAIETFARCMAIDMADKKITVNVVAPGGIKTDMYHAVC 220
Query: 237 IDQQAYQNFLERSKETH-------ALGRVGNPEEVAKAIAFLASDDASFTTGEHLTVDGG 289
+ L + L RVG P ++A+ + FLAS+D + TG+ + +DGG
Sbjct: 221 REYIPNGENLSNEEVDEYAAVQWSPLRRVGLPIDIARVVCFLASNDGGWVTGKVIGIDGG 280
>2z1n_A Dehydrogenase; reductase, SDR, oxidoreductase; 1.80A {Aeropyrum
pernix}
Length = 260
Score = 186 bits (474), Expect = 3e-58
Identities = 73/300 (24%), Positives = 116/300 (38%), Gaps = 52/300 (17%)
Query: 1 MNFTGKVILVTGASSGIGAATALHLAKLDAKLAITGRNVEQLNKVSESCQSVSKN-KPLV 59
+ GK+ +VT SSG+G A+AL LA+ A+L + RN E+L + S+ + +
Sbjct: 3 LGIQGKLAVVTAGSSGLGFASALELARNGARLLLFSRNREKLEAAASRIASLVSGAQVDI 62
Query: 60 IQADLTSEEDTKRIIDTVVKHYQKLNVLVNNAVTGASSGIGAATALHLAKLDAKLAITGR 119
+ D+ D R+ + + ++LV + G ++
Sbjct: 63 VAGDIREPGDIDRLFEKA-RDLGGADILVYST------GGPRPGRFMELGVEDWDE---- 111
Query: 120 NVEQLNKVSESCQSVSKNKPLVIQADLTSEEDTKRIIDTVVKHYQKLNVLVNNAGNIVNV 179
+ S + + + G +V +
Sbjct: 112 ---------------------SYRLLARS---AVWVGRRAAEQMVE-----KGWGRMVYI 142
Query: 180 SSVNGLRSFPGVLAYCVSKAAVDQFTSCTALELASKGVRVNSVNPGVTLT--------NL 231
SV LR + + + + V ALELA GV VN+V P + LT
Sbjct: 143 GSVTLLRPWQDLALSNIMRLPVIGVVRTLALELAPHGVTVNAVLPSLILTDRVRSLAEER 202
Query: 232 HKNSGIDQQAYQNFLERSKETHALGRVGNPEEVAKAIAFLASDDASFTTGEHLTVDGGRH 291
+ SGI + + +GRVG PEE+A +AFLAS+ ASF TG + VDGG H
Sbjct: 203 ARRSGITVEEAL---KSMASRIPMGRVGKPEELASVVAFLASEKASFITGAVIPVDGGAH 259
>1xu9_A Corticosteroid 11-beta-dehydrogenase, isozyme 1; hydroxysteroid,
SDR, oxidoreductase; HET: NDP CPS MES; 1.55A {Homo
sapiens} SCOP: c.2.1.2 PDB: 1xu7_A* 3bzu_A* 3czr_A*
3d3e_A* 3d4n_A* 3fco_A* 3frj_A* 3h6k_A* 3hfg_A* 3oq1_A*
3qqp_A* 3pdj_A* 3d5q_A* 2rbe_A* 3byz_A* 3ey4_A* 3tfq_A*
3ch6_A* 2irw_A* 2ilt_A* ...
Length = 286
Score = 186 bits (475), Expect = 6e-58
Identities = 58/280 (20%), Positives = 88/280 (31%), Gaps = 78/280 (27%)
Query: 2 NFTGKVILVTGASSGIGAATALHLAKLDAKLAITGRNVEQLNKVSESCQSVSKNKPLVIQ 61
GK ++VTGAS GIG A HLAK+ A + +T R+ E L KV C + I
Sbjct: 25 MLQGKKVIVTGASKGIGREMAYHLAKMGAHVVVTARSKETLQKVVSHCLELGAASAHYIA 84
Query: 62 ADLTSEEDTKRIIDTVVKHYQKLNVLVNNAVTGASSGIGAATALHLAKLDAKLAITGRNV 121
+ ++ + K L++L+ N T N+
Sbjct: 85 GTMEDMTFAEQFVAQAGKLMGGLDMLILNH------ITN----------------TSLNL 122
Query: 122 EQLNKVSESCQSVSKNKPLVIQADLTSEEDTKRIIDT-----------VVKHYQKLNVLV 170
++ ++ + L
Sbjct: 123 FH-----------------------DDIHHVRKSMEVNFLSYVVLTVAALPM------LK 153
Query: 171 NNAGNIVNVSSVNGLRSFPGVLAYCVSKAAVDQFTSCTALELASKG--VRVNSVNPGVTL 228
+ G+IV VSS+ G ++P V AY SK A+D F S E + V + G+
Sbjct: 154 QSNGSIVVVSSLAGKVAYPMVAAYSASKFALDGFFSSIRKEYSVSRVNVSITLCVLGLID 213
Query: 229 TNLHKNSGIDQQAYQNFLERSKETHALGRVGNPEEVAKAI 268
T + S H EE A I
Sbjct: 214 TETAMKA------------VSGIVHMQAA--PKEECALEI 239
>1ja9_A 4HNR, 1,3,6,8-tetrahydroxynaphthalene reductase;
protein-NADPH-active site inhibitor complex,
oxidoreductase, chain dehydrogenase; HET: NDP PYQ; 1.50A
{Magnaporthe grisea} SCOP: c.2.1.2
Length = 274
Score = 186 bits (474), Expect = 6e-58
Identities = 62/298 (20%), Positives = 116/298 (38%), Gaps = 57/298 (19%)
Query: 4 TGKVILVTGASSGIGAATALHLAKLDAKLAIT-GRNVEQLNKVSESCQSVSKNKPLVIQA 62
GKV L TGA GIG A+ L + A + + G + + +V + + + + IQA
Sbjct: 20 AGKVALTTGAGRGIGRGIAIELGRRGASVVVNYGSSSKAAEEVVAELKKLGA-QGVAIQA 78
Query: 63 DLTSEEDTKRIIDTVVKHYQKLNVLVNNAVTGASSGIGAATALH---LAKLDAKLAITGR 119
D++ + + D V H+ L+ +++N+ G+ D +
Sbjct: 79 DISKPSEVVALFDKAVSHFGGLDFVMSNS------GMEVWCDELEVTQELFDKVFNL--- 129
Query: 120 NVEQLNKVSESCQSVSKNKPLVIQADLTSEEDTKRIIDTVVKHYQKLNVLVNNAGNIVNV 179
N + + V Q +KH ++ G I+
Sbjct: 130 NT--------------RGQFFVAQQ--------------GLKHCRR-------GGRIILT 154
Query: 180 SSVNGLRS-FPGVLAYCVSKAAVDQFTSCTALELASKGVRVNSVNPGVTLTNLHKNSGID 238
SS+ + + P Y SKAAV+ F A++ +KGV VN + PG T++ +
Sbjct: 155 SSIAAVMTGIPNHALYAGSKAAVEGFCRAFAVDCGAKGVTVNCIAPGGVKTDMFDENSWH 214
Query: 239 QQAYQN-------FLERSKETHALGRVGNPEEVAKAIAFLASDDASFTTGEHLTVDGG 289
E + L R+G P ++ +A++ L +++ + G+ + + GG
Sbjct: 215 YAPGGYKGMPQEKIDEGLANMNPLKRIGYPADIGRAVSALCQEESEWINGQVIKLTGG 272
>2gdz_A NAD+-dependent 15-hydroxyprostaglandin dehydrogen; dehydrogenase,
structural genomics, SH dehydrogenase/reductase,
inflammation; HET: NAD; 1.65A {Homo sapiens} SCOP:
c.2.1.2
Length = 267
Score = 185 bits (473), Expect = 6e-58
Identities = 69/305 (22%), Positives = 115/305 (37%), Gaps = 73/305 (23%)
Query: 3 FTGKVILVTGASSGIGAATALHLAKLDAKLAITGRNVEQLNK-VSESCQSVSKNKPLVIQ 61
GKV LVTGA+ GIG A A L AK+A+ N+E + + + K L IQ
Sbjct: 5 VNGKVALVTGAAQGIGRAFAEALLLKGAKVALVDWNLEAGVQCKAALHEQFEPQKTLFIQ 64
Query: 62 ADLTSEEDTKRIIDTVVKHYQKLNVLVNNAVTGASSGIGAATALHLAKLDAKLAITGRNV 121
D+ ++ + VV H+ +L++LVNNA G+
Sbjct: 65 CDVADQQQLRDTFRKVVDHFGRLDILVNNA------GV---------------------- 96
Query: 122 EQLNKVSESCQSVSKNKPLVIQADLTSEEDTKRIIDT-----------VVKHYQKLNVLV 170
+E++ ++ + + + K N
Sbjct: 97 -------------------------NNEKNWEKTLQINLVSVISGTYLGLDYMSKQN--G 129
Query: 171 NNAGNIVNVSSVNGLRSFPGVLAYCVSKAAVDQFTSCTAL--ELASKGVRVNSVNPGVTL 228
G I+N+SS+ GL YC SK + FT AL L + GVR+N++ PG
Sbjct: 130 GEGGIIINMSSLAGLMPVAQQPVYCASKHGIVGFTRSAALAANLMNSGVRLNAICPGFVN 189
Query: 229 TNLHKN--SGIDQQAYQNFLERSKETHALGRVGNPEEVAKAIAFLASDDASFTTGEHLTV 286
T + ++ + Y + + K+ + +P +A + L DDA G + +
Sbjct: 190 TAILESIEKEENMGQYIEYKDHIKDMIKYYGILDPPLIANGLITLIEDDAL--NGAIMKI 247
Query: 287 DGGRH 291
+
Sbjct: 248 TTSKG 252
>3v2h_A D-beta-hydroxybutyrate dehydrogenase; structural genomics,
PSI-biology, NEW YORK structural genomi research
consortium, nysgrc; 3.00A {Sinorhizobium meliloti}
Length = 281
Score = 186 bits (474), Expect = 6e-58
Identities = 76/310 (24%), Positives = 121/310 (39%), Gaps = 68/310 (21%)
Query: 1 MNFTGKVILVTGASSGIGAATALHLAKLDAKLAITGRN-VEQLNKVSESCQSVSKNKPLV 59
+ K ++TG++SGIG A A LAK A + + G +++ V++ +S L
Sbjct: 21 QSMMTKTAVITGSTSGIGLAIARTLAKAGANIVLNGFGAPDEIRTVTDEVAGLSSGTVLH 80
Query: 60 IQADLTSEEDTKRIIDTVVKHYQKLNVLVNNAVTGASSGIGAATALHLAKLDAKLAITGR 119
AD+T + ++ V + ++LVNNA G+ + K++
Sbjct: 81 HPADMTKPSEIADMMAMVADRFGGADILVNNA------GVQ-----FVEKIED------- 122
Query: 120 NVEQLNKVSESCQSVSKNKPLVIQADLTSEEDTKRIIDT-----------VVKHYQKLNV 168
E RII + +K
Sbjct: 123 ---------------------------FPVEQWDRIIAVNLSSSFHTIRGAIPPMKK--- 152
Query: 169 LVNNAGNIVNVSSVNGLRSFPGVLAYCVSKAAVDQFTSCTALELASKGVRVNSVNPGVTL 228
G I+N++S +GL + P AY +K + T ALE+A GV VNS+ PG L
Sbjct: 153 --KGWGRIINIASAHGLVASPFKSAYVAAKHGIMGLTKTVALEVAESGVTVNSICPGYVL 210
Query: 229 TNLHKNSGIDQQAYQNFLERSK------ETHALGRVGNPEEVAKAIAFLASDDASFTTGE 282
T L + DQ + E + + E+VA +LA DDA+ TG
Sbjct: 211 TPLVEKQIPDQARTRGITEEQVINEVMLKGQPTKKFITVEQVASLALYLAGDDAAQITGT 270
Query: 283 HLTVDGGRHA 292
H+++DGG A
Sbjct: 271 HVSMDGGWTA 280
>3un1_A Probable oxidoreductase; structural genomics, PSI-biology, NEW YORK
structural genomi research consortium, nysgrc; 2.45A
{Sinorhizobium meliloti}
Length = 260
Score = 185 bits (472), Expect = 7e-58
Identities = 64/294 (21%), Positives = 115/294 (39%), Gaps = 62/294 (21%)
Query: 1 MNFTGKVILVTGASSGIGAATALHLAKLDAKLAITGRNVEQLNKVSESCQSVSKNKPLVI 60
M KV+++TGAS GIGA + ++ T R+++ +
Sbjct: 24 MRNQQKVVVITGASQGIGAGLVRAYRDRNYRVVATSRSIKPSADP----------DIHTV 73
Query: 61 QADLTSEEDTKRIIDTVVKHYQKLNVLVNNAVTGASSGIGAATALHLAKLDAKLAITGRN 120
D++ E RI+ ++ + +++ LVNNA G+ A
Sbjct: 74 AGDISKPETADRIVREGIERFGRIDSLVNNA------GVFLAKPFVEMTQ---------- 117
Query: 121 VEQLNKVSESCQSVSKNKPLVIQADLTSEEDTKRIIDTVVKHYQKLNVLVNNAGNIVNVS 180
E + + ++ I K +G+IV+++
Sbjct: 118 -EDYDHN--------------LGVNVAG---FFHITQRAAAEMLK-----QGSGHIVSIT 154
Query: 181 SVNGLRSFPGV--LAYCVSKAAVDQFTSCTALELASKGVRVNSVNPGVTLTNLHKNSGID 238
+ + G+ ++K ++ T A+E + GVRVN+V+PGV T +H
Sbjct: 155 TSLVDQPMVGMPSALASLTKGGLNAVTRSLAMEFSRSGVRVNAVSPGVIKTPMH-----P 209
Query: 239 QQAYQNFLERSKETHALGRVGNPEEVAKAIAFLASDDASFTTGEHLTVDGGRHA 292
+ + H +GR+G +V A+ +L + A F TGE L VDGG++A
Sbjct: 210 AETHSTLAGL----HPVGRMGEIRDVVDAVLYL--EHAGFITGEILHVDGGQNA 257
>3gem_A Short chain dehydrogenase; structural genomics, APC65077,
oxidoreductase, PSI-2, protein structure initiative;
1.83A {Pseudomonas syringae PV}
Length = 260
Score = 185 bits (471), Expect = 1e-57
Identities = 53/302 (17%), Positives = 96/302 (31%), Gaps = 79/302 (26%)
Query: 1 MNFTGKVILVTGASSGIGAATALHLAKLDAKLAITGRNVEQLNKVSESCQSVSKNKPLVI 60
M + IL+TGAS +G AL L + ++ I+ R S + + + +
Sbjct: 23 MTLSSAPILITGASQRVGLHCALRLLEHGHRVIISYRTEH------ASVTELRQAGAVAL 76
Query: 61 QADLTSEEDTKRIIDTVVKHYQKLNVLVNNAVTGASSGIGAATALHLAKLDAKLAITGRN 120
D + E ID + L +V+NA A
Sbjct: 77 YGDFSCETGIMAFIDLLKTQTSSLRAVVHNA------SEWLAETP--------------- 115
Query: 121 VEQLNKVSESCQSVSKNKPLVIQADLTSEEDTKRIIDT-----------VVKHYQKLNVL 169
++ R+
Sbjct: 116 -------------------------GEEADNFTRMFSVHMLAPYLINLHCEPLLTA---- 146
Query: 170 VNNAGNIVNVSSVNGLRSFPGVLAYCVSKAAVDQFTSCTALELASKGVRVNSVNPGVTLT 229
+ +IV++S + +AYC +KA ++ T A A V+VN + P + +
Sbjct: 147 -SEVADIVHISDDVTRKGSSKHIAYCATKAGLESLTLSFAARFAPL-VKVNGIAPALLMF 204
Query: 230 NLHKNSGIDQQAYQNFLERSKETHALGRVGNPEEVAKAIAFLASDDASFTTGEHLTVDGG 289
++ + ALG E + +++ +L +++ TG LTV+GG
Sbjct: 205 QPKDDAAY--------RANALAKSALGIEPGAEVIYQSLRYLLD--STYVTGTTLTVNGG 254
Query: 290 RH 291
RH
Sbjct: 255 RH 256
>1fjh_A 3alpha-hydroxysteroid dehydrogenase/carbonyl reductase; short chain
dehydrogenase, SDR, xenobiotic, metyrapone,
oligomerisation; 1.68A {Comamonas testosteroni} SCOP:
c.2.1.2 PDB: 1fk8_A*
Length = 257
Score = 183 bits (466), Expect = 4e-57
Identities = 64/290 (22%), Positives = 110/290 (37%), Gaps = 42/290 (14%)
Query: 6 KVILVTGASSGIGAATALHLAKLDAKLAITGRNVEQLNKVSESCQSVSKNKPLVIQADLT 65
+I+++G ++GIGAAT L ++ ++ ADL+
Sbjct: 2 SIIVISGCATGIGAATRKVLEAAGHQIVGIDIRDAEV------------------IADLS 43
Query: 66 SEEDTKR-IIDTVVKHYQKLNVLVNNAVTGASSGIGAATALHLAKLDAKLAITGRNVEQL 124
+ E K+ I D + K + ++ LV A G+G T + L +++ +L
Sbjct: 44 TAEGRKQAIADVLAKCSKGMDGLVLCA------GLGPQTKV----LGNVVSVNYFGATEL 93
Query: 125 NKVSESCQSVSKNKPLVIQADLTSEEDTKRIIDTVVKHYQKLNVLVNNAGNIVNVSSVNG 184
P + + + + + + L AG ++
Sbjct: 94 MDAF---------LPALKKGHQPAAVVISSVASAHLAFDKNPLALALEAGEEAKARAIVE 144
Query: 185 -LRSFPGVLAYCVSKAAVDQFTSCTALELASKGVRVNSVNPGVTLTNLHKNSGIDQQAYQ 243
G LAY SK A+ A GVR+N++ PG T T L + D + +
Sbjct: 145 HAGEQGGNLAYAGSKNALTVAVRKRAAAWGEAGVRLNTIAPGATETPLLQAGLQDPRYGE 204
Query: 244 NFLERSKETHALGRVGNPEEVAKAIAFLASDDASFTTGEHLTVDGGRHAM 293
+ + +GR P E+A IAFL S AS+ G + +DGG A+
Sbjct: 205 SIAKF---VPPMGRRAEPSEMASVIAFLMSPAASYVHGAQIVIDGGIDAV 251
>1sby_A Alcohol dehydrogenase; ternary complex, NAD, trifluoroethanol,
oxidoreductase; HET: NAD; 1.10A {Scaptodrosophila
lebanonensis} SCOP: c.2.1.2 PDB: 1b14_A* 1b15_A* 1a4u_A*
1b2l_A* 1b16_A* 3rj5_A* 3rj9_A* 1mg5_A*
Length = 254
Score = 182 bits (465), Expect = 6e-57
Identities = 57/302 (18%), Positives = 94/302 (31%), Gaps = 74/302 (24%)
Query: 1 MNFTGKVILVTGASSGIGAATALHLAKLDAKLAITGRNVEQLNKVSESCQSVSKNKPLVI 60
M+ T K ++ A GIG T+ L K + K + VE ++E K
Sbjct: 1 MDLTNKNVIFVAALGGIGLDTSRELVKRNLKNFVILDRVENPTALAELKAINPKVNITFH 60
Query: 61 QADLT-SEEDTKRIIDTVVKHYQKLNVLVNNAVTGASSGIGAATALHLAKLDAKLAITGR 119
D+T ++K+++ + + +++L+N A GI
Sbjct: 61 TYDVTVPVAESKKLLKKIFDQLKTVDILINGA------GI-------------------- 94
Query: 120 NVEQLNKVSESCQSVSKNKPLVIQADLTSEEDTKRIIDT-----------VVKHYQKLNV 168
+ +R I ++ + K
Sbjct: 95 ---------------------------LDDHQIERTIAINFTGLVNTTTAILDFWDKRKG 127
Query: 169 LVNNAGNIVNVSSVNGLRSFPGVLAYCVSKAAVDQFTSCTALELASKGVRVNSVNPGVTL 228
G I N+ SV G + V Y SKAAV FT+ A GV S+NPG+T
Sbjct: 128 --GPGGIIANICSVTGFNAIHQVPVYSASKAAVVSFTNSLAKLAPITGVTAYSINPGITR 185
Query: 229 TNLHKNSGIDQQAYQNFLERSKETHALGRVGNPEEVAKAIAFLASDDASFTTGEHLTVDG 288
T L ++ + R E E+ + + G +D
Sbjct: 186 TPLVHTFN----SWLDVEPRVAELLLSHPTQTSEQCGQNFVKAIEANK---NGAIWKLDL 238
Query: 289 GR 290
G
Sbjct: 239 GT 240
>3ksu_A 3-oxoacyl-acyl carrier protein reductase; structural genomics,
PSI-2, dehydrogenase, protein structure initiative;
2.30A {Oenococcus oeni psu-1}
Length = 262
Score = 183 bits (466), Expect = 7e-57
Identities = 55/302 (18%), Positives = 105/302 (34%), Gaps = 73/302 (24%)
Query: 2 NFTGKVILVTGASSGIGAATALHLAKLDAKLAIT---GRNVEQLNKVSESCQSVSKNKPL 58
+ KVI++ G +GA TA A L + ++ + NK+ + + K
Sbjct: 8 DLKNKVIVIAGGIKNLGALTAKTFALESVNLVLHYHQAKDSDTANKLKDELEDQGA-KVA 66
Query: 59 VIQADLTSEEDTKRIIDTVVKHYQKLNVLVNNAVTGASSGIGAATALHLAKLDAKLAITG 118
+ Q+DL++EE+ ++ D K + K+++ +N G
Sbjct: 67 LYQSDLSNEEEVAKLFDFAEKEFGKVDIAINTV------GKV------------------ 102
Query: 119 RNVEQLNKVSESCQSVSKNKPLVIQADLTSEEDTKRIIDT-----------VVKHYQKLN 167
KP+V TSE + + KH
Sbjct: 103 -----------------LKKPIV----ETSEAEFDAMDTINNKVAYFFIKQAAKHMNP-- 139
Query: 168 VLVNNAGNIVNVSSVNGLRSFPGVLAYCVSKAAVDQFTSCTALELASKGVRVNSVNPGVT 227
G+I+ +++ Y +KA V+ +T + EL + + VN++ PG
Sbjct: 140 -----NGHIITIATSLLAAYTGFYSTYAGNKAPVEHYTRAASKELMKQQISVNAIAPGPM 194
Query: 228 LTNLHKNSGIDQQAYQNFLERSKETHALGRVGNPEEVAKAIAFLASDDASFTTGEHLTVD 287
T+ + K ++ E++A I FL + D + G+ + +
Sbjct: 195 DTSFFYGQETKES-----TAFHKSQAMGNQLTKIEDIAPIIKFLTT-DGWWINGQTIFAN 248
Query: 288 GG 289
GG
Sbjct: 249 GG 250
>2a4k_A 3-oxoacyl-[acyl carrier protein] reductase;
reductase,hyperthermophIle, structural genomics, PSI,
protei structure initiative; 2.30A {Thermus
thermophilus} SCOP: c.2.1.2
Length = 263
Score = 182 bits (464), Expect = 1e-56
Identities = 77/294 (26%), Positives = 128/294 (43%), Gaps = 52/294 (17%)
Query: 2 NFTGKVILVTGASSGIGAATALHLAKLDAKLAITGRNVEQLNKVSESCQSVSKNKPLVIQ 61
+GK ILVTGA+SGIG A A+ A L R L + + ++ + + +
Sbjct: 3 RLSGKTILVTGAASGIGRAALDLFAREGASLVAVDREERLLAEAVAALEA----EAIAVV 58
Query: 62 ADLTSEEDTKRIIDTVVKHYQKLNVLVNNAVTGASSGIGAATALHLAKLDAKLAITGRNV 121
AD++ + + + ++ + +L+ + + A G+ + L
Sbjct: 59 ADVSDPKAVEAVFAEALEEFGRLHGVAHFA------GVAHSALSWNLPL----------- 101
Query: 122 EQLNKVSESCQSVSKNKPLVIQADLTSEEDTKRIIDTVVKHYQKLNVLVNNAGNIVNVSS 181
E KV ++ +LT + + + ++ G++V S
Sbjct: 102 EAWEKV--------------LRVNLTG---SFLVARKAGEVLEE-------GGSLVLTGS 137
Query: 182 VNGLRSFPGVLAYCVSKAAVDQFTSCTALELASKGVRVNSVNPGVTLTNLHKNSGIDQQA 241
V GL G+ Y K V ALELA KGVRVN + PG+ T + +G+ A
Sbjct: 138 VAGL-GAFGLAHYAAGKLGVVGLARTLALELARKGVRVNVLLPGLIQTPM--TAGLPPWA 194
Query: 242 YQNFLERSKETHALGRVGNPEEVAKAIAFLASDDASFTTGEHLTVDGGRHAMCP 295
++ + LGR G PEEVA+A FL S+++++ TG+ L VDGGR + P
Sbjct: 195 WEQEVGA----SPLGRAGRPEEVAQAALFLLSEESAYITGQALYVDGGRSIVGP 244
>2dkn_A 3-alpha-hydroxysteroid dehydrogenase; oxidoreductase, rossmann
fold; HET: NAI; 1.80A {Pseudomonas SP}
Length = 255
Score = 181 bits (462), Expect = 2e-56
Identities = 68/295 (23%), Positives = 102/295 (34%), Gaps = 54/295 (18%)
Query: 6 KVILVTGASSGIGAATALHLAKLDAKLAITGRNVEQLNKVSESCQSVSKNKPLVIQADLT 65
VI +TG++SGIGAA LA+ + R + +ADL+
Sbjct: 2 SVIAITGSASGIGAALKELLARAGHTVIGIDRGQADI------------------EADLS 43
Query: 66 SEEDTKRIIDTVVKHY-QKLNVLVNNAVTGASSGIGAATALHLAKLDAKLAITGRNVEQL 124
+ + + V+ L+ LV A G ++ ++ L
Sbjct: 44 TPGGRETAVAAVLDRCGGVLDGLVCCAGVGVTAANSGLVVAV------NYFGVSALLDGL 97
Query: 125 NKVSESCQSVSKNKPLVIQADLTSEEDTKRIIDTVVK------HYQKLNVLVNNAGNIVN 178
A+ S + + V AG+
Sbjct: 98 -------------------AEALSRGQQPAAVIVGSIAATQPGAAELPMVEAMLAGDEAR 138
Query: 179 VSSVNGLRSFPGVLAYCVSKAAVDQFTSCTALELASKGVRVNSVNPGVTLTNLHKNSGID 238
+ + + AY SK AV ++ A +GVR+N V PG T L + S D
Sbjct: 139 AIELAEQQGQTHL-AYAGSKYAVTCLARRNVVDWAGRGVRLNVVAPGAVETPLLQASKAD 197
Query: 239 QQAYQNFLERSKETHALGRVGNPEEVAKAIAFLASDDASFTTGEHLTVDGGRHAM 293
+ ++ LGR P EVA+AIAFL ASF G L VDGG A+
Sbjct: 198 PRYGESTRRF---VAPLGRGSEPREVAEAIAFLLGPQASFIHGSVLFVDGGMDAL 249
>3icc_A Putative 3-oxoacyl-(acyl carrier protein) reducta; structural
genomics, putative 3-oxoacyl-(acyl carrier protei
reductase, oxidoreductase; HET: NAP MES; 1.87A {Bacillus
anthracis str}
Length = 255
Score = 181 bits (461), Expect = 3e-56
Identities = 79/297 (26%), Positives = 123/297 (41%), Gaps = 61/297 (20%)
Query: 4 TGKVILVTGASSGIGAATALHLAKLDAKLAIT-GRNVEQLNKVSESCQSVSKNKPLVIQA 62
GKV LVTGAS GIG A A LA A +AI G E+ + QS + I A
Sbjct: 6 KGKVALVTGASRGIGRAIAKRLANDGALVAIHYGNRKEEAEETVYEIQS-NGGSAFSIGA 64
Query: 63 DLTSEEDTKRIIDTVVKHYQ------KLNVLVNNAVTGASSGIGAATALHLAKLDAKLAI 116
+L S + + ++ Q K ++L+NNA GIG +
Sbjct: 65 NLESLHGVEALYSSLDNELQNRTGSTKFDILINNA------GIGPGAFI----------- 107
Query: 117 TGRNVEQLNKVSESCQSVSKNKPLVIQADLTSEEDTKRIIDTVVKHY----QKLNVLVNN 172
+ T+E+ R++ K Q+ + +
Sbjct: 108 ----------------------------EETTEQFFDRMVSVNAKAPFFIIQQALSRLRD 139
Query: 173 AGNIVNVSSVNGLRSFPGVLAYCVSKAAVDQFTSCTALELASKGVRVNSVNPGVTLTNLH 232
I+N+SS S P +AY ++K A++ T A +L ++G+ VN++ PG T+++
Sbjct: 140 NSRIINISSAATRISLPDFIAYSMTKGAINTMTFTLAKQLGARGITVNAILPGFVKTDMN 199
Query: 233 KNSGIDQQAYQNFLERSKETHALGRVGNPEEVAKAIAFLASDDASFTTGEHLTVDGG 289
D Q S A R+G E++A AFLAS D+ + TG+ + V GG
Sbjct: 200 AELLSDPMMKQYATTIS----AFNRLGEVEDIADTAAFLASPDSRWVTGQLIDVSGG 252
>2ew8_A (S)-1-phenylethanol dehydrogenase; transferase; 2.10A {Azoarcus SP}
SCOP: c.2.1.2 PDB: 2ewm_A*
Length = 249
Score = 179 bits (456), Expect = 1e-55
Identities = 67/298 (22%), Positives = 111/298 (37%), Gaps = 68/298 (22%)
Query: 3 FTGKVILVTGASSGIGAATALHLAKLDAKLAITGRNVEQLNKVSESCQSVSKNKPLVIQA 62
K+ ++TG ++GIG A A A A +AI + + +++ + + L ++
Sbjct: 5 LKDKLAVITGGANGIGRAIAERFAVEGADIAIADLVPAP--EAEAAIRNLGR-RVLTVKC 61
Query: 63 DLTSEEDTKRIIDTVVKHYQKLNVLVNNAVTGASSGIGAATALHLAKLDAKLAITGRNVE 122
D++ D + V+ + + ++LVNNA GI
Sbjct: 62 DVSQPGDVEAFGKQVISTFGRCDILVNNA------GI----------------------- 92
Query: 123 QLNKVSESCQSVSKNKPLVIQADLTSEEDTKRIIDT-----------VVKHYQKLNVLVN 171
P + E K+ + V ++ N
Sbjct: 93 ------------YPLIPFD----ELTFEQWKKTFEINVDSGFLMAKAFVPGMKR-----N 131
Query: 172 NAGNIVNVSSVNGLRSFPGVLAYCVSKAAVDQFTSCTALELASKGVRVNSVNPGVTLTNL 231
G I+N++S Y +KAA FT A +L G+ VN++ P + T
Sbjct: 132 GWGRIINLTSTTYWLKIEAYTHYISTKAANIGFTRALASDLGKDGITVNAIAPSLVRTAT 191
Query: 232 HKNSGIDQQAYQNFLERSKETHALGRVGNPEEVAKAIAFLASDDASFTTGEHLTVDGG 289
+ S + A+ R+ P ++ A AFLASDDASF TG+ L VDGG
Sbjct: 192 TEASALSAMF----DVLPNMLQAIPRLQVPLDLTGAAAFLASDDASFITGQTLAVDGG 245
>1h5q_A NADP-dependent mannitol dehydrogenase; oxidoreductase, mannitol
metabolism; HET: NAP; 1.50A {Agaricus bisporus} SCOP:
c.2.1.2
Length = 265
Score = 179 bits (457), Expect = 1e-55
Identities = 69/303 (22%), Positives = 111/303 (36%), Gaps = 65/303 (21%)
Query: 1 MNFTGKVILVTGASSGIGAATALHLAKLDAKLAITGRNVEQLNKVSESCQSVSKNKPLVI 60
++F K I+VTG + GIG A +A A +A+ R+ +V+E K
Sbjct: 10 ISFVNKTIIVTGGNRGIGLAFTRAVAAAGANVAVIYRSAADAVEVTEKVGKEFGVKTKAY 69
Query: 61 QADLTSEEDTKRIIDTVVKHYQKLNVLVNNAVTGASSGIGAATALHLAKLDAKLAITGRN 120
Q D+++ + + I + ++ L+ NA G+
Sbjct: 70 QCDVSNTDIVTKTIQQIDADLGPISGLIANA------GV--------------------- 102
Query: 121 VEQLNKVSESCQSVSKNKPLVIQADLTSEEDTKRIIDT-------VVKHYQKLNVLVNNA 173
S KP + ED + D + KL +
Sbjct: 103 --------------SVVKPAT----ELTHEDFAFVYDVNVFGVFNTCRAVAKLWLQKQQK 144
Query: 174 GNIVNVSSVNG-------LRSFPGVLAYCVSKAAVDQFTSCTALELASKGVRVNSVNPGV 226
G+IV SS++ L + Y SKAA A E AS G+RVN+++PG
Sbjct: 145 GSIVVTSSMSSQIINQSSLNGSLTQVFYNSSKAACSNLVKGLAAEWASAGIRVNALSPGY 204
Query: 227 TLTNLHKNSGIDQQAYQNFLERSKETHALGRVGNPEEVAKAIAFLASDDASFTTGEHLTV 286
T+ + +D++ + L R PEE+ L SD A++ TG +
Sbjct: 205 VNTDQ--TAHMDKKIRDHQASNI----PLNRFAQPEEMTGQAILLLSDHATYMTGGEYFI 258
Query: 287 DGG 289
DGG
Sbjct: 259 DGG 261
>3t4x_A Oxidoreductase, short chain dehydrogenase/reducta; structural
genomics, center for structural genomics of infec
diseases, csgid; 2.80A {Bacillus anthracis}
Length = 267
Score = 179 bits (457), Expect = 2e-55
Identities = 66/299 (22%), Positives = 120/299 (40%), Gaps = 53/299 (17%)
Query: 1 MNFTGKVILVTGASSGIGAATALHLAKLDAKLAITGRNVEQLNKVSESCQS-VSKNKPLV 59
M GK LVTG+++GIG A A L A + I GR E +N+ + ++
Sbjct: 6 MQLKGKTALVTGSTAGIGKAIATSLVAEGANVLINGRREENVNETIKEIRAQYPDAILQP 65
Query: 60 IQADLTSEEDTKRIIDTVVKHYQKLNVLVNNAVTGASSGIGAATALHLAKLDAKLAITGR 119
+ ADL +E+ V++ Y K+++L+NN GI +
Sbjct: 66 VVADLGTEQG----CQDVIEKYPKVDILINNL------GIFEPVEYFDIPDEDWFK---- 111
Query: 120 NVEQLNKVSESCQSVSKNKPLVIQADLTSEEDTKRIIDTVVKHYQKLNVLVNNAGNIVNV 179
+ + ++ S R+ + +K + G ++ +
Sbjct: 112 ---------------------LFEVNIMS---GVRLTRSYLKKMIE-----RKEGRVIFI 142
Query: 180 SSVNGLRSFPGVLAYCVSKAAVDQFTSCTALELASKGVRVNSVNPGVTLT--------NL 231
+S + + Y +K + A V VN++ PG TLT +L
Sbjct: 143 ASEAAIMPSQEMAHYSATKTMQLSLSRSLAELTTGTNVTVNTIMPGSTLTEGVETMLNSL 202
Query: 232 HKNSGID-QQAYQNFLERSKETHALGRVGNPEEVAKAIAFLASDDASFTTGEHLTVDGG 289
+ N + ++A + F++ ++ T + R+ PEE+A + FL+S +S G L +DGG
Sbjct: 203 YPNEQLTIEEAEKRFMKENRPTSIIQRLIRPEEIAHLVTFLSSPLSSAINGSALRIDGG 261
>4da9_A Short-chain dehydrogenase/reductase; structural genomics, protein
structure initiative, PSI-biology; 2.50A {Sinorhizobium
meliloti}
Length = 280
Score = 180 bits (458), Expect = 2e-55
Identities = 68/300 (22%), Positives = 109/300 (36%), Gaps = 63/300 (21%)
Query: 2 NFTGKVILVTGASSGIGAATALHLAKLDAKLAITG-RNVEQLNKVSESCQSVSKNKPLVI 60
V +VTG GIG A LA +AITG + E + V + + + +
Sbjct: 26 QKARPVAIVTGGRRGIGLGIARALAASGFDIAITGIGDAEGVAPVIAELSGLGA-RVIFL 84
Query: 61 QADLTSEEDTKRIIDTVVKHYQKLNVLVNNAVTGASSGIGAATALHLAKLDAKLAITGRN 120
+ADL + +D VV + +++ LVNNA GI + L
Sbjct: 85 RADLADLSSHQATVDAVVAEFGRIDCLVNNA------GIASIVRDDFLDL---------- 128
Query: 121 VEQLNKVSESCQSVSKNKPLVIQADLTSEEDTKRIIDT-----------VVKHYQKLNVL 169
E+ I+ V+K +
Sbjct: 129 ---------------------------KPENFDTIVGVNLRGTVFFTQAVLKAMLASDA- 160
Query: 170 VNNAGNIVNVSSVNGLRSFPGVLAYCVSKAAVDQFTSCTALELASKGVRVNSVNPGVTLT 229
+ +I+N++SV+ + + P L YC+SKA + F+ AL LA G+ V V PG+ +
Sbjct: 161 -RASRSIINITSVSAVMTSPERLDYCMSKAGLAAFSQGLALRLAETGIAVFEVRPGIIRS 219
Query: 230 NLHKNSGIDQQAYQNFLERSKETHALGRVGNPEEVAKAIAFLASDDASFTTGEHLTVDGG 289
++ + R G PE++ +A LA F TG + DGG
Sbjct: 220 DMTAAVSGKYDG-----LIESGLVPMRRWGEPEDIGNIVAGLAGGQFGFATGSVIQADGG 274
>4dry_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics,
PSI-biology, NEW YORK structural genomi research
consortium, nysgrc; 2.50A {Sinorhizobium meliloti}
Length = 281
Score = 178 bits (455), Expect = 4e-55
Identities = 46/301 (15%), Positives = 91/301 (30%), Gaps = 66/301 (21%)
Query: 1 MNFTGKVILVTGASSGIGAATALHLAKLDAKLAITGRNVEQLNKVSESCQSVSKNKPLVI 60
+ G++ LVTG +G+G A L+ + ITGR + L+ + + N +
Sbjct: 29 GSGEGRIALVTGGGTGVGRGIAQALSAEGYSVVITGRRPDVLDAAAGEIGGRTGNIVRAV 88
Query: 61 QADLTSEEDTKRIIDTVVKHYQKLNVLVNNAVTGASSGIGAATALHLAKLDAKLAITGRN 120
D+ + + V + +L++LVNNA G
Sbjct: 89 VCDVGDPDQVAALFAAVRAEFARLDLLVNNA------GSNVPPVP--------------- 127
Query: 121 VEQLNKVSESCQSVSKNKPLVIQADLTSEEDTKRIIDT-----------VVKHYQKLNVL 169
+ + E I+ + +
Sbjct: 128 -----------------------LEEVTFEQWNGIVAANLTGAFLCTQHAFRMMKAQT-- 162
Query: 170 VNNAGNIVNVSSVNGLRSFPGVLAYCVSKAAVDQFTSCTALELASKGVRVNSVNPGVTLT 229
G I+N S++ P Y +K A+ T TAL+ + ++ G T
Sbjct: 163 -PRGGRIINNGSISAQTPRPNSAPYTATKHAITGLTKSTALDGRMHDIACGQIDIGNAAT 221
Query: 230 NLHKNSGIDQQAYQNFLERSKETHALGRVGNPEEVAKAIAFLASD-DASFTTGEHLTVDG 288
++ ++ A E +A+A+ ++AS ++ +
Sbjct: 222 DMTARMSTGV-------LQANGEVAAEPTIPIEHIAEAVVYMASLPLSANVLTMTVMATR 274
Query: 289 G 289
Sbjct: 275 M 275
>2q2v_A Beta-D-hydroxybutyrate dehydrogenase; SDR, oxidoreductase; HET:
NAD; 1.90A {Pseudomonas putida} PDB: 2q2q_A* 2q2w_A
Length = 255
Score = 178 bits (453), Expect = 4e-55
Identities = 68/295 (23%), Positives = 106/295 (35%), Gaps = 53/295 (17%)
Query: 3 FTGKVILVTGASSGIGAATALHLAKLDAKLAITGRNVEQLNKVSESCQSVSKNKPLVIQA 62
GK LVTG++SGIG A LA+ A + + G K + A
Sbjct: 2 LKGKTALVTGSTSGIGLGIAQVLARAGANIVLNGFGDPA--PALAEIARHG-VKAVHHPA 58
Query: 63 DLTSEEDTKRIIDTVVKHYQKLNVLVNNAVTGASSGIGAATALH---LAKLDAKLAITGR 119
DL+ + + + + +++LVNNA GI + L D
Sbjct: 59 DLSDVAQIEALFALAEREFGGVDILVNNA------GIQHVAPVEQFPLESWDK------- 105
Query: 120 NVEQLNKVSESCQSVSKNKPLVIQADLTSEEDTKRIIDTVVKHYQKLNVLVNNAGNIVNV 179
+I +L++ + + N G I+N+
Sbjct: 106 ---------------------IIALNLSA---VFHGTRLALPGMRA-----RNWGRIINI 136
Query: 180 SSVNGLRSFPGVLAYCVSKAAVDQFTSCTALELASKGVRVNSVNPGVTLTNLHKNSGIDQ 239
+SV+GL G AY +K V T LE A+ V N++ PG LT L + D+
Sbjct: 137 ASVHGLVGSTGKAAYVAAKHGVVGLTKVVGLETATSNVTCNAICPGWVLTPLVQKQIDDR 196
Query: 240 QAYQNFLERSK-----ETHALGRVGNPEEVAKAIAFLASDDASFTTGEHLTVDGG 289
A +++ E PE + + + FL S+ S G VDGG
Sbjct: 197 AANGGDPLQAQHDLLAEKQPSLAFVTPEHLGELVLFLCSEAGSQVRGAAWNVDGG 251
>3r1i_A Short-chain type dehydrogenase/reductase; structural genomics,
seattle structural genomics center for infectious
disease, ssgcid; 1.95A {Mycobacterium marinum}
Length = 276
Score = 178 bits (454), Expect = 5e-55
Identities = 80/302 (26%), Positives = 125/302 (41%), Gaps = 70/302 (23%)
Query: 1 MNFTGKVILVTGASSGIGAATALHLAKLDAKLAITGRNVEQLNKVSESCQSVSKNKPLVI 60
+ +GK L+TGAS+GIG AL A+ A++A+ R+ + L V++ V K L I
Sbjct: 28 FDLSGKRALITGASTGIGKKVALAYAEAGAQVAVAARHSDALQVVADEIAGVGG-KALPI 86
Query: 61 QADLTSEEDTKRIIDTVVKHYQKLNVLVNNAVTGASSGIGAATALHLAKLDAKLAITGRN 120
+ D+T + + ++D + +++ V NA GI + A+ LD
Sbjct: 87 RCDVTQPDQVRGMLDQMTGELGGIDIAVCNA------GIVSVQAM----LD--------- 127
Query: 121 VEQLNKVSESCQSVSKNKPLVIQADLTSEEDTKRIIDT-----------VVKHYQKLNVL 169
E+ +RI DT +
Sbjct: 128 --------------------------MPLEEFQRIQDTNVTGVFLTAQAAARAMVDQG-- 159
Query: 170 VNNAGNIVNVSSVNGLRSFPG--VLAYCVSKAAVDQFTSCTALELASKGVRVNSVNPGVT 227
G I+ +S++G V YC SKAAV T A+ELA +RVNSV+PG
Sbjct: 160 --LGGTIITTASMSGHIINIPQQVSHYCTSKAAVVHLTKAMAVELAPHQIRVNSVSPGYI 217
Query: 228 LTNLHKNSGIDQQAYQNFLERSKETHALGRVGNPEEVAKAIAFLASDDASFTTGEHLTVD 287
T L + ++ + LGR+G PEE+ +LAS +S+ TG + +D
Sbjct: 218 RTEL-------VEPLADYHALWEPKIPLGRMGRPEELTGLYLYLASAASSYMTGSDIVID 270
Query: 288 GG 289
GG
Sbjct: 271 GG 272
>1x1t_A D(-)-3-hydroxybutyrate dehydrogenase; NAD, NADH, SDR, short chain
dehydrogenase, ketone BODY, beta hydroxybutyrate,
oxidoreductase; HET: NAD; 1.52A {Pseudomonas fragi}
SCOP: c.2.1.2 PDB: 1wmb_A* 2ztl_A* 2ztv_A* 2ztm_A*
2ztu_A* 2yz7_A 2zea_A* 3eew_A* 3vdq_A* 3vdr_A*
Length = 260
Score = 177 bits (451), Expect = 1e-54
Identities = 76/297 (25%), Positives = 120/297 (40%), Gaps = 52/297 (17%)
Query: 3 FTGKVILVTGASSGIGAATALHLAKLDAKLAITGRN-VEQLNKVSESCQSVSKNKPLVIQ 61
GKV +VTG++SGIG A LA A + + G ++ KV + K L
Sbjct: 2 LKGKVAVVTGSTSGIGLGIATALAAQGADIVLNGFGDAAEIEKVRAGLAAQHGVKVLYDG 61
Query: 62 ADLTSEEDTKRIIDTVVKHYQKLNVLVNNAVTGASSGIGAATALH---LAKLDAKLAITG 118
ADL+ E + ++D V+ ++++LVNNA GI + K DA
Sbjct: 62 ADLSKGEAVRGLVDNAVRQMGRIDILVNNA------GIQHTALIEDFPTEKWDA------ 109
Query: 119 RNVEQLNKVSESCQSVSKNKPLVIQADLTSEEDTKRIIDTVVKHYQKLNVLVNNAGNIVN 178
++ +L++ + H +K G I+N
Sbjct: 110 ----------------------ILALNLSA---VFHGTAAALPHMKK-----QGFGRIIN 139
Query: 179 VSSVNGLRSFPGVLAYCVSKAAVDQFTSCTALELASKGVRVNSVNPGVTLTNLHKNSGID 238
++S +GL + AY +K V FT TALE A +G+ N++ PG T L +
Sbjct: 140 IASAHGLVASANKSAYVAAKHGVVGFTKVTALETAGQGITANAICPGWVRTPLVEKQISA 199
Query: 239 QQAYQNFLERSK------ETHALGRVGNPEEVAKAIAFLASDDASFTTGEHLTVDGG 289
+ + E + PE++ FLASD A+ TG ++VDGG
Sbjct: 200 LAEKNGVDQETAARELLSEKQPSLQFVTPEQLGGTAVFLASDAAAQITGTTVSVDGG 256
>3e03_A Short chain dehydrogenase; structural genomics, PSI-2, protein
structure initiative, NEW YORK structural genomix
research consortium; 1.69A {Xanthomonas campestris PV}
Length = 274
Score = 177 bits (451), Expect = 1e-54
Identities = 53/303 (17%), Positives = 99/303 (32%), Gaps = 67/303 (22%)
Query: 1 MNFTGKVILVTGASSGIGAATALHLAKLDAKLAITGRNVEQLNKVSESCQSVSKN----- 55
+ +GK + +TGAS GIG A AL A+ A +AI ++ K+ + S +
Sbjct: 2 LTLSGKTLFITGASRGIGLAIALRAARDGANVAIAAKSAVANPKLPGTIHSAAAAVNAAG 61
Query: 56 -KPLVIQADLTSEEDTKRIIDTVVKHYQKLNVLVNNAVTGASSGIGAATALH---LAKLD 111
+ L ++ D+ E+ + + V + +++LVNNA + + D
Sbjct: 62 GQGLALKCDIREEDQVRAAVAATVDTFGGIDILVNNA------SAIWLRGTLDTPMKRFD 115
Query: 112 AKLAITGRNVEQLNKVSESCQSVSKNKPLVIQADLTSEEDTKRIIDTVVKHYQKLNVLVN 171
+ R + QA + H +
Sbjct: 116 LMQQVNARGSF-----------------VCAQA--------------CLPHLLQ-----A 139
Query: 172 NAGNIVNVSSVNGLRS--FPGVLAYCVSKAAVDQFTSCTALELASKGVRVNSVNPGVTLT 229
+I+ ++ L + Y ++K + T A E +GV +N++ P
Sbjct: 140 PNPHILTLAPPPSLNPAWWGAHTGYTLAKMGMSLVTLGLAAEFGPQGVAINALWPRTV-- 197
Query: 230 NLHKNSGIDQQAYQNFLERSKETHALGRVGNPEEVAKAIAFLASDDASFTTGEHLTVDGG 289
I A PE +A A + + +A+ G+ L D
Sbjct: 198 -------IATDAINMLPG-----VDAAACRRPEIMADAAHAVLTREAAGFHGQFLIDDEV 245
Query: 290 RHA 292
Sbjct: 246 LAQ 248
>3ctm_A Carbonyl reductase; alcohol dehydrogenase, short-chain
dehydrogenases/reductases (SDR), X-RAY crystallography,
oxidoreductase; 2.69A {Candida parapsilosis}
Length = 279
Score = 177 bits (451), Expect = 2e-54
Identities = 64/302 (21%), Positives = 113/302 (37%), Gaps = 69/302 (22%)
Query: 1 MNFTGKVILVTGASSGIGAATALHLAKLDAKLAITGRNVEQLNKVSESCQSVSKNKPLVI 60
+ GKV VTG+S GIG A A A+ A +AI + K ++
Sbjct: 30 FSLKGKVASVTGSSGGIGWAVAEAYAQAGADVAIWYNSHPADEKAEHLQKT-YGVHSKAY 88
Query: 61 QADLTSEEDTKRIIDTVVKHYQKLNVLVNNAVTGASSGIGAATALHLAKLDAKLAITGRN 120
+ +++ + + I K + ++V V NA G+
Sbjct: 89 KCNISDPKSVEETISQQEKDFGTIDVFVANA------GVTW------------------- 123
Query: 121 VEQLNKVSESCQSVSKNKPLVIQADLTSEEDTKRIIDT-----------VVKHYQKLNVL 169
P + D+ + + +II + K ++K
Sbjct: 124 ---------------TQGPEI---DVDNYDSWNKIISVDLNGVYYCSHNIGKIFKK---- 161
Query: 170 VNNAGNIVNVSSVNGLRSFPGVL--AYCVSKAAVDQFTSCTALELASKGVRVNSVNPGVT 227
N G+++ SS++G L Y +KAA A+E A RVN+++PG
Sbjct: 162 -NGKGSLIITSSISGKIVNIPQLQAPYNTAKAACTHLAKSLAIEWAPFA-RVNTISPGYI 219
Query: 228 LTNLHKNSGIDQQAYQNFLERSKETHALGRVGNPEEVAKAIAFLASDDASFTTGEHLTVD 287
T++ + + + + LGR G +E+ +LAS+ ++FTTG + +D
Sbjct: 220 DTDI--TDFASKDMKAKWWQLT----PLGREGLTQELVGGYLYLASNASTFTTGSDVVID 273
Query: 288 GG 289
GG
Sbjct: 274 GG 275
>3sc4_A Short chain dehydrogenase (A0QTM2 homolog); ssgcid, NIH, niaid,
SBRI, UW, emerald biostructures, structu genomics; 2.50A
{Mycobacterium thermoresistibile}
Length = 285
Score = 177 bits (450), Expect = 3e-54
Identities = 57/302 (18%), Positives = 103/302 (34%), Gaps = 64/302 (21%)
Query: 1 MNFTGKVILVTGASSGIGAATALHLAKLDAKLAITGRNVEQLNKVSESCQSVSKN----- 55
M+ GK + ++G S GIG A A +A A +A+ ++ E K+ + + +K
Sbjct: 5 MSLRGKTMFISGGSRGIGLAIAKRVAADGANVALVAKSAEPHPKLPGTIYTAAKEIEEAG 64
Query: 56 -KPLVIQADLTSEEDTKRIIDTVVKHYQKLNVLVNNAVTGASSGIGAATALH---LAKLD 111
+ L I D+ + + V+ + +++ VNNA ++ L + D
Sbjct: 65 GQALPIVGDIRDGDAVAAAVAKTVEQFGGIDICVNNA------SAINLGSIEEVPLKRFD 118
Query: 112 AKLAITGRNVEQLNKVSESCQSVSKNKPLVIQADLTSEEDTKRIIDTVVKHYQKLNVLVN 171
I R V Q+ + H +
Sbjct: 119 LMNGIQVRGTY-----------------AVSQS--------------CIPHMKG-----R 142
Query: 172 NAGNIVNVSSVNGLRS-FPGVLAYCVSKAAVDQFTSCTALELASKGVRVNSVNPGVTLTN 230
+ +I+ +S L + Y ++K + A EL G+ N++ P T
Sbjct: 143 DNPHILTLSPPIRLEPKWLRPTPYMMAKYGMTLCALGIAEELRDAGIASNTLWPRTT--- 199
Query: 231 LHKNSGIDQQAYQNFLERSKETHALGRVGNPEEVAKAIAFLASDDASFTTGEHLTVDGGR 290
+ A QN L A+ R PE A A + + +S+T L D
Sbjct: 200 ------VATAAVQNLLG---GDEAMARSRKPEVYADAAYVVLNKPSSYTGNTLLCEDVLL 250
Query: 291 HA 292
+
Sbjct: 251 ES 252
>3l6e_A Oxidoreductase, short-chain dehydrogenase/reducta; structural
genomics, PSI-2, protein structure initiative; 2.30A
{Aeromonas hydrophila subsp}
Length = 235
Score = 174 bits (444), Expect = 5e-54
Identities = 48/301 (15%), Positives = 91/301 (30%), Gaps = 82/301 (27%)
Query: 4 TGKVILVTGASSGIGAATALHLAKLDAKLAITGRNVEQLNKVSESCQSVSKNKPLVIQAD 63
+ I+VTGA SG+G A + L + ++++ GR ++L + N + I AD
Sbjct: 2 SLGHIIVTGAGSGLGRALTIGLVERGHQVSMMGRRYQRLQQQELLLG----NAVIGIVAD 57
Query: 64 LTSEEDTKRIIDTVVKHYQKLNVLVNNAVTGASSGIGAATALHLAKLDAKLAITGRNVEQ 123
L ED V+ ++++ A G G +
Sbjct: 58 LAHHEDVDVAFAAAVEWGGLPELVLHCA------GTGEFGPV------------------ 93
Query: 124 LNKVSESCQSVSKNKPLVIQADLTSEEDTKRIIDT-----------VVKHYQKLNVLVNN 172
+ + E +R++++ V+ +
Sbjct: 94 ---------------------GVYTAEQIRRVMESNLVSTILVAQQTVRL------IGER 126
Query: 173 AGNIVNVSSVNGLRSFPGVLAYCVSKAAVDQFTSCTALELASKGVRVNSVNPGVTLTNLH 232
G + NV S YC SK + F EL +R+ ++ P +
Sbjct: 127 GGVLANVLSSAAQVGKANESLYCASKWGMRGFLESLRAELKDSPLRLVNLYPSGIRS--- 183
Query: 233 KNSGIDQQAYQNFLERSKETHALGRVGNPEEVAKAIAF-LASDDASFTTGEHLTVDGGRH 291
F + + PE+ A + L + + T + + G H
Sbjct: 184 -----------EFWDNTDHVDP-SGFMTPEDAAAYMLDALEARSSCHVTDLFIGRNEGHH 231
Query: 292 A 292
Sbjct: 232 H 232
>2wsb_A Galactitol dehydrogenase; oxidoreductase, SDR, rossmann fold,
tagatose; HET: NAD; 1.25A {Rhodobacter sphaeroides} PDB:
2wdz_A* 3lqf_A*
Length = 254
Score = 175 bits (446), Expect = 6e-54
Identities = 71/299 (23%), Positives = 110/299 (36%), Gaps = 71/299 (23%)
Query: 4 TGKVILVTGASSGIGAATALHLAKLDAKLAITGRNVEQLNKVSESCQSVSKNKPLVIQAD 63
G VTGA SGIG A A+L + R L++ ++ + I AD
Sbjct: 10 DGACAAVTGAGSGIGLEICRAFAASGARLILIDREAAALDRAAQELGAA---VAARIVAD 66
Query: 64 LTSEEDTKRIIDTVVKHYQKLNVLVNNAVTGASSGIGAATALHLAKLDAKLAITGRNVEQ 123
+T E + +++LVN+A GI
Sbjct: 67 VTDAEAMTAAAAEA-EAVAPVSILVNSA------GIA----------------------- 96
Query: 124 LNKVSESCQSVSKNKPLVIQADLTSEEDTKRIIDT-----------VVKHYQKLNVLVNN 172
+ + + + ++++ +
Sbjct: 97 ------------RLHDAL---ETD-DATWRQVMAVNVDGMFWASRAFGRAMVA-----RG 135
Query: 173 AGNIVNVSSVNGLRSFPG--VLAYCVSKAAVDQFTSCTALELASKGVRVNSVNPGVTLTN 230
AG IVN+ S++G +Y SK AV Q T A E A +GVRVN++ PG T
Sbjct: 136 AGAIVNLGSMSGTIVNRPQFASSYMASKGAVHQLTRALAAEWAGRGVRVNALAPGYVATE 195
Query: 231 LHKNSGIDQQAYQNFLERSKETHALGRVGNPEEVAKAIAFLASDDASFTTGEHLTVDGG 289
+ + ++ +L+ + +GR G P E+A A FLAS AS+ TG L VDGG
Sbjct: 196 MTLKMRERPELFETWLDMT----PMGRCGEPSEIAAAALFLASPAASYVTGAILAVDGG 250
>3dii_A Short-chain dehydrogenase/reductase SDR; SCOR, rossmann fold,
oxidoreductase; 1.70A {Clostridium thermocellum atcc
27405} PDB: 3dij_A* 3ged_A 3geg_A*
Length = 247
Score = 174 bits (443), Expect = 1e-53
Identities = 59/296 (19%), Positives = 103/296 (34%), Gaps = 75/296 (25%)
Query: 1 MNFTGKVILVTGASSGIGAATALHLAKLDAKLAITGRNVEQLNKVSESCQSVSKNKPLVI 60
MN + ++VTG GIG L + K+ + ++ ++ ++
Sbjct: 1 MN---RGVIVTGGGHGIGKQICLDFLEAGDKVCFIDIDEKRSADFAKERPNL-----FYF 52
Query: 61 QADLTSEEDTKRIIDTVVKHYQKLNVLVNNAVTGASSGIGAATALHLAKLDAKLAITGRN 120
D+ K+ ++ ++ Q+++VLVNNA
Sbjct: 53 HGDVADPLTLKKFVEYAMEKLQRIDVLVNNA------CR--------------------- 85
Query: 121 VEQLNKVSESCQSVSKNKPLVIQADLTSEEDTKRIIDT-------VVKHYQKLNVLVNNA 173
L E+ I+ + + + L+ N
Sbjct: 86 --------------GSKGILS----SLLYEEFDYILSVGLKAPYELSRLCRD--ELIKNK 125
Query: 174 GNIVNVSSVNGLRSFPGVLAYCVSKAAVDQFTSCTALELASKGVRVNSVNPGVTLTNLHK 233
G I+N++S +S P AY +K + T A+ L V VN + PG
Sbjct: 126 GRIINIASTRAFQSEPDSEAYASAKGGIVALTHALAMSLGP-DVLVNCIAPGW------- 177
Query: 234 NSGIDQQAYQNFLERSKETHALGRVGNPEEVAKAIAFLASDDASFTTGEHLTVDGG 289
I+ Q F + G+VG P++++ + FL D F TGE + VDGG
Sbjct: 178 ---INVTEQQEFTQEDCAAIPAGKVGTPKDISNMVLFLCQQD--FITGETIIVDGG 228
>3nyw_A Putative oxidoreductase; fatty acid synthesis,3-oxoacyl-[ACP]
reductase, NADP+ bindin rossman fold, PSI-II, nysgxrc;
2.16A {Bacteroides thetaiotaomicron}
Length = 250
Score = 174 bits (443), Expect = 1e-53
Identities = 50/289 (17%), Positives = 96/289 (33%), Gaps = 78/289 (26%)
Query: 1 MNFTGKVILVTGASSGIGAATALHLAKLDAKLAITGRNVEQLNKVSESCQSVSKN--KPL 58
+ + ++TGAS GIGA A LA ++ + R+ + L KV + +K+ +P+
Sbjct: 3 LEKQKGLAIITGASQGIGAVIAAGLATDGYRVVLIARSKQNLEKVHDEIMRSNKHVQEPI 62
Query: 59 VIQADLTSEEDTKRIIDTVVKHYQKLNVLVNNAVTGASSGIGAATALHLAKLDAKLAITG 118
V+ D+T I + + Y +++LVN A + +L
Sbjct: 63 VLPLDITDCTKADTEIKDIHQKYGAVDILVNAA------AMFMDGSL------------- 103
Query: 119 RNVEQLNKVSESCQSVSKNKPLVIQADLTSEEDTKRIIDT-----------VVKHYQKLN 167
++ ++I++ V + +
Sbjct: 104 ---------------------------SEPVDNFRKIMEINVIAQYGILKTVTEIMKV-- 134
Query: 168 VLVNNAGNIVNVSSVNGLRSFPGVLAYCVSKAAVDQFTSCTALELASKGVRVNSVNPGVT 227
G I NV+S F Y +K A+ ELA G+RV ++ PG
Sbjct: 135 ---QKNGYIFNVASRAAKYGFADGGIYGSTKFALLGLAESLYRELAPLGIRVTTLCPGWV 191
Query: 228 LTNLHKNSGIDQQAYQNFLERSKETHALGRVGNPEEVAKAIAFLASDDA 276
T + +++ + P+++ I L +
Sbjct: 192 NT--------------DMAKKAGTPFKDEEMIQPDDLLNTIRCLLNLSE 226
>3i1j_A Oxidoreductase, short chain dehydrogenase/reducta; dimer, MIXE
beta, structural genomics, PSI-2; 1.90A {Pseudomonas
syringae PV}
Length = 247
Score = 174 bits (443), Expect = 1e-53
Identities = 66/285 (23%), Positives = 113/285 (39%), Gaps = 55/285 (19%)
Query: 3 FTGKVILVTGASSGIGAATALHLAKLDAKLAITGRNVEQLNKVSESCQSVSKNKPLVI-- 60
G+VILVTGA+ GIGAA A A A + + GR L +VS+ +S + +PL+I
Sbjct: 12 LKGRVILVTGAARGIGAAAARAYAAHGASVVLLGRTEASLAEVSDQIKSAGQPQPLIIAL 71
Query: 61 QADLTSEEDTKRIIDTVVKHYQKLNVLVNNAVTGASSGIGAATALHLAKLDAKLAITGRN 120
+ + + + + V + +L+ L++NA I + + +
Sbjct: 72 NLENATAQQYRELAARVEHEFGRLDGLLHNA------SI----------IGPRTPLEQLP 115
Query: 121 VEQLNKVSESCQSVSKNKPLVIQADLTSEEDTKRIIDTVVKHYQKLNVLVNNAGNIVNVS 180
E +V + ++ + T + ++ ++ + +I S
Sbjct: 116 DEDFMQV--------------MHVNVNA---TFMLTRALLPLLKR-----SEDASIAFTS 153
Query: 181 SVNGLRSFPGVLAYCVSKAAVDQFTSCTALEL-ASKGVRVNSVNPGVTLTNLHKNSGIDQ 239
S G + AY VSK A + A EL VR NS+NPG T T +
Sbjct: 154 SSVGRKGRANWGAYGVSKFATEGLMQTLADELEGVTAVRANSINPGATRTGMRA------ 207
Query: 240 QAYQNFLERSKETHALGRVGNPEEVAKAIAFLASDDASFTTGEHL 284
QAY + + L PE++ +L D++ G+ L
Sbjct: 208 QAY-------PDENPLNNPA-PEDIMPVYLYLMGPDSTGINGQAL 244
>1zmt_A Haloalcohol dehalogenase HHEC; halohydrin dehalogenase, epoxide
catalysis, enantioselectivity, lyase; HET: RNO; 1.70A
{Agrobacterium tumefaciens} SCOP: c.2.1.2 PDB: 1pwz_A
1px0_A* 1pwx_A* 1zo8_A*
Length = 254
Score = 173 bits (442), Expect = 2e-53
Identities = 47/286 (16%), Positives = 96/286 (33%), Gaps = 47/286 (16%)
Query: 6 KVILVTGASSGIGAATALHLAKLDAKLAITGRNVEQLNKVSESCQSVSKNKPLVIQADLT 65
+VT G +AL L++ +A + + + Q
Sbjct: 2 STAIVTNVKHFGGMGSALRLSEAGHTVACHDES-------FKQKDELEAFAETYPQLKPM 54
Query: 66 SEEDTKRIIDTVVKHYQKLNVLVNNAVTGASSGIGAATALHLAKLDAKLAITGRNVEQLN 125
SE++ +I+ V Y +++VLV+N + K E
Sbjct: 55 SEQEPAELIEAVTSAYGQVDVLVSND------IFAPEFQP-IDKYAV---------EDYR 98
Query: 126 KVSESCQSVSKNKPLVIQADLTSEEDTKRIIDTVVKHYQKLNVLVNNAGNIVNVSSVNGL 185
++A +++ V +K +G+I+ ++S
Sbjct: 99 GA--------------VEALQIR---PFALVNAVASQMKK-----RKSGHIIFITSATPF 136
Query: 186 RSFPGVLAYCVSKAAVDQFTSCTALELASKGVRVNSVNPGVTLTNLHKNSGIDQQAYQN- 244
+ + Y ++A + + EL + V ++ P + + N
Sbjct: 137 GPWKELSTYTSARAGACTLANALSKELGEYNIPVFAIGPNYLHSEDSPYFYPTEPWKTNP 196
Query: 245 -FLERSKETHALGRVGNPEEVAKAIAFLASDDASFTTGEHLTVDGG 289
+ K+ AL R+G +E+ + +AFLAS + TG+ + GG
Sbjct: 197 EHVAHVKKVTALQRLGTQKELGELVAFLASGSCDYLTGQVFWLAGG 242
>3tsc_A Putative oxidoreductase; structural genomics, seattle structural
genomics center for infectious disease, ssgcid,
nucleotide; HET: NAD; 2.05A {Mycobacterium avium subsp}
Length = 277
Score = 173 bits (442), Expect = 3e-53
Identities = 63/310 (20%), Positives = 103/310 (33%), Gaps = 68/310 (21%)
Query: 3 FTGKVILVTGASSGIGAATALHLAKLDAKLAITGRNVEQLNKVSESCQSVSKNKPLV--- 59
G+V +TGA+ G G A A+ +A A + + + V S V
Sbjct: 9 LEGRVAFITGAARGQGRAHAVRMAAEGADIIAVDIAGKLPSCVPYDPASPDDLSETVRLV 68
Query: 60 ---------IQADLTSEEDTKRIIDTVVKHYQKLNVLVNNAVTGASSGIGAATALHLAKL 110
D + ++++D V +L+++V NA G+ A A
Sbjct: 69 EAANRRIVAAVVDTRDFDRLRKVVDDGVAALGRLDIIVANA------GVAAPQAWDD--- 119
Query: 111 DAKLAITGRNVEQLNKVSESCQSVSKNKPLVIQADLTSEEDTKRIIDT-------VVKHY 163
+ ED + ++D V
Sbjct: 120 ------------------------------------ITPEDFRDVMDINVTGTWNTVMAG 143
Query: 164 QKLNVLVNNAGNIVNVSSVNGLRSFPGVLAYCVSKAAVDQFTSCTALELASKGVRVNSVN 223
+ G+I+ +SS G++ P ++ Y SK AV A EL +RVNSV+
Sbjct: 144 APRIIEGGRGGSIILISSAAGMKMQPFMIHYTASKHAVTGLARAFAAELGKHSIRVNSVH 203
Query: 224 PGVTLT----NLHKNSGIDQQAYQNFLERSKETHALGRVGNPEEVAKAIAFLASDDASFT 279
PG T + L V PE++A + +LASD++
Sbjct: 204 PGPVNTPMGSGDMVTAVGQAMETNPQLSHVLTPFLPDWVAEPEDIADTVCWLASDESRKV 263
Query: 280 TGEHLTVDGG 289
T + VD G
Sbjct: 264 TAAQIPVDQG 273
>4dyv_A Short-chain dehydrogenase/reductase SDR; structural genomics,
PSI-biology, NEW YORK structural genomi research
consortium, nysgrc; 1.80A {Xanthobacter autotrophicus}
Length = 272
Score = 172 bits (438), Expect = 1e-52
Identities = 50/287 (17%), Positives = 97/287 (33%), Gaps = 69/287 (24%)
Query: 2 NFTGKVILVTGASSGIGAATALHLAKLDAKLAITGRNVEQLNKVSESCQSVSKNKPLVIQ 61
K+ +VTGA SG+G A A+ LA +A+ GR ++ L + + L +
Sbjct: 25 KTGKKIAIVTGAGSGVGRAVAVALAGAGYGVALAGRRLDALQETAAEIGD----DALCVP 80
Query: 62 ADLTSEEDTKRIIDTVVKHYQKLNVLVNNAVTGASSGIGAATALHLAKLDAKLAITGRNV 121
D+T + + + V+ + +++VL NNA G GA
Sbjct: 81 TDVTDPDSVRALFTATVEKFGRVDVLFNNA------GTGAPAIP---------------- 118
Query: 122 EQLNKVSESCQSVSKNKPLVIQADLTSEEDTKRIIDT-----------VVKHYQKLNVLV 170
+ + K+++DT + +
Sbjct: 119 ----------------------MEDLTFAQWKQVVDTNLTGPFLCTQEAFRVMKAQE--- 153
Query: 171 NNAGNIVNVSSVNGLRSFPGVLAYCVSKAAVDQFTSCTALELASKGVRVNSVNPGVTLTN 230
G I+N S++ P Y +K A+ T T+L+ + ++ G T
Sbjct: 154 PRGGRIINNGSISATSPRPYSAPYTATKHAITGLTKSTSLDGRVHDIACGQIDIGNADTP 213
Query: 231 LHKNSGIDQQAYQNFLERSKETHALGRVGNPEEVAKAIAFLASDDAS 277
+ + ++ + + V + VA A+ ++AS
Sbjct: 214 MAQKMKAGV-------PQADLSIKVEPVMDVAHVASAVVYMASLPLD 253
>3ijr_A Oxidoreductase, short chain dehydrogenase/reducta; structural
genomics, infectious D center for structural genomics of
infectious diseases; HET: NAD; 2.05A {Bacillus anthracis
str} PDB: 3i3o_A*
Length = 291
Score = 172 bits (438), Expect = 2e-52
Identities = 74/299 (24%), Positives = 115/299 (38%), Gaps = 71/299 (23%)
Query: 4 TGKVILVTGASSGIGAATALHLAKLDAKLAITGRNVEQLNKVSESCQSVSKN--KPLVIQ 61
GK +L+TG SGIG A ++ AK A +AI + E +E+ Q V K K +++
Sbjct: 46 KGKNVLITGGDSGIGRAVSIAFAKEGANIAIAYLDEEG--DANETKQYVEKEGVKCVLLP 103
Query: 62 ADLTSEEDTKRIIDTVVKHYQKLNVLVNNAVTGASSGIGAATALHLAKLDAKLAITGRNV 121
DL+ E+ K I+ V+ LN+LVNN
Sbjct: 104 GDLSDEQHCKDIVQETVRQLGSLNILVNNV------AQQYPQQGLE-------------- 143
Query: 122 EQLNKVSESCQSVSKNKPLVIQADLTSEEDTKRIIDT-----------VVKHYQKLNVLV 170
+T E ++ + H ++
Sbjct: 144 -----------------------YIT-AEQLEKTFRINIFSYFHVTKAALSHLKQ----- 174
Query: 171 NNAGNIVNVSSVNGLRSFPGVLAYCVSKAAVDQFTSCTALELASKGVRVNSVNPGVTLTN 230
I+N +S+ ++ Y +K A+ FT + L KG+RVN V PG T
Sbjct: 175 --GDVIINTASIVAYEGNETLIDYSATKGAIVAFTRSLSQSLVQKGIRVNGVAPGPIWTP 232
Query: 231 LHKNSGIDQQAYQNFLERSKETHALGRVGNPEEVAKAIAFLASDDASFTTGEHLTVDGG 289
L S D++ F + R G P E+A A +LAS D+S+ TG+ + V+GG
Sbjct: 233 LIP-SSFDEKKVSQFGSNV----PMQRPGQPYELAPAYVYLASSDSSYVTGQMIHVNGG 286
>4g81_D Putative hexonate dehydrogenase; enzyme function initiative, EFI,
structural genomics, dehydr oxidoreductase; 1.90A
{Salmonella enterica subsp}
Length = 255
Score = 171 bits (435), Expect = 2e-52
Identities = 66/297 (22%), Positives = 111/297 (37%), Gaps = 65/297 (21%)
Query: 4 TGKVILVTGASSGIGAATALHLAKLDAKLAITGRNVEQLNKVSESCQSVSKNKPLVIQAD 63
TGK LVTG++ G+G A A LA A++ + L + ++ + D
Sbjct: 8 TGKTALVTGSARGLGFAYAEGLAAAGARVILNDIRATLLAESVDTLTRKGY-DAHGVAFD 66
Query: 64 LTSEEDTKRIIDTVVKHYQKLNVLVNNAVTGASSGIGAATALHLAKLDAKLAITGRNVEQ 123
+T E + + +++L+NNA GI
Sbjct: 67 VTDELAIEAAFSKLDAEGIHVDILINNA------GI------------------------ 96
Query: 124 LNKVSESCQSVSKNKPLVIQADLTSEEDTKRIIDT-----------VVKHYQKLNVLVNN 172
KP+V +L E+ +++IDT K N +
Sbjct: 97 -----------QYRKPMV---EL-ELENWQKVIDTNLTSAFLVSRSAAKRMIARN----S 137
Query: 173 AGNIVNVSSVNGLRSFPGVLAYCVSKAAVDQFTSCTALELASKGVRVNSVNPGVTLTNLH 232
G I+N+ S+ + P V Y +K + T A E A ++ N++ PG LT+++
Sbjct: 138 GGKIINIGSLTSQAARPTVAPYTAAKGGIKMLTCSMAAEWAQFNIQTNAIGPGYILTDMN 197
Query: 233 KNSGIDQQAYQNFLERSKETHALGRVGNPEEVAKAIAFLASDDASFTTGEHLTVDGG 289
D+Q + R G PEE+ FL+S + + G+ + VDGG
Sbjct: 198 TALIEDKQFDSWVKSST----PSQRWGRPEELIGTAIFLSSKASDYINGQIIYVDGG 250
>2rhc_B Actinorhodin polyketide ketoreductase; oxidoreductase,
combinatorial biosynthesis, short chain
dehydrogenase/reductase; HET: NAP EMO; 2.10A
{Streptomyces coelicolor} SCOP: c.2.1.2 PDB: 2rh4_A*
1w4z_A* 3csd_B* 3qrw_A* 3ri3_B* 2rhr_B* 1x7g_A* 1x7h_A*
1xr3_A*
Length = 277
Score = 171 bits (435), Expect = 3e-52
Identities = 76/294 (25%), Positives = 115/294 (39%), Gaps = 43/294 (14%)
Query: 1 MNFTGKVILVTGASSGIGAATALHLAKLDAKLAITGRNVEQLNKVSESCQSVSKNKPLVI 60
+V LVTGA+SGIG A L K ++ + R E L + + + +
Sbjct: 18 ATQDSEVALVTGATSGIGLEIARRLGKEGLRVFVCARGEEGLRTTLKELRE-AGVEADGR 76
Query: 61 QADLTSEEDTKRIIDTVVKHYQKLNVLVNNAVTGASSGIGAATALHLAKLDAKLAITGRN 120
D+ S + + ++ VV+ Y ++VLVNNA G A
Sbjct: 77 TCDVRSVPEIEALVAAVVERYGPVDVLVNNA------GRPGGGATAELAD---------- 120
Query: 121 VEQLNKVSESCQSVSKNKPLVIQADLTSEEDTKRIIDTVVKHYQKLNVLVNNAGNIVNVS 180
E V ++ +LT R+ V+K L G IVN++
Sbjct: 121 -ELWLDV--------------VETNLTG---VFRVTKQVLKAGGMLE---RGTGRIVNIA 159
Query: 181 SVNGLRSFPGVLAYCVSKAAVDQFTSCTALELASKGVRVNSVNPG-----VTLTNLHKNS 235
S G + Y SK V FT LELA G+ VN+V PG + + S
Sbjct: 160 STGGKQGVVHAAPYSASKHGVVGFTKALGLELARTGITVNAVCPGFVETPMAASVREHYS 219
Query: 236 GIDQQAYQNFLERSKETHALGRVGNPEEVAKAIAFLASDDASFTTGEHLTVDGG 289
I + + + +R +GR P EVA+ +A+L A+ T + L V GG
Sbjct: 220 DIWEVSTEEAFDRITARVPIGRYVQPSEVAEMVAYLIGPGAAAVTAQALNVCGG 273
>1vl8_A Gluconate 5-dehydrogenase; TM0441, structural genomics, JCSG
structure initiative, PSI, joint center for structural
GENO oxidoreductase; HET: NAP; 2.07A {Thermotoga
maritima} SCOP: c.2.1.2
Length = 267
Score = 170 bits (434), Expect = 4e-52
Identities = 67/298 (22%), Positives = 124/298 (41%), Gaps = 66/298 (22%)
Query: 4 TGKVILVTGASSGIGAATALHLAKLDAKLAITGRNVEQLNKVSESCQSVSKNKPLVIQAD 63
G+V LVTG S G+G A LA+ + + RN+E+ ++ ++ + + + D
Sbjct: 20 RGRVALVTGGSRGLGFGIAQGLAEAGCSVVVASRNLEEASEAAQKLTEKYGVETMAFRCD 79
Query: 64 LTSEEDTKRIIDTVVKHYQKLNVLVNNAVTGASSGIGAATALHLAKLDAKLAITGRNVEQ 123
+++ E+ K++++ V + + KL+ +VN A GI
Sbjct: 80 VSNYEEVKKLLEAVKEKFGKLDTVVNAA------GIN----------------------- 110
Query: 124 LNKVSESCQSVSKNKPLVIQADLTSEEDTKRIIDT-----------VVKHYQKLNVLVNN 172
+ P + ++ +++I+ ++ ++
Sbjct: 111 ------------RRHPAE---EFP-LDEFRQVIEVNLFGTYYVCREAFSLLRE-----SD 149
Query: 173 AGNIVNVSSVNGLR-SFPGVLAYCVSKAAVDQFTSCTALELASKGVRVNSVNPGVTLTNL 231
+I+N+ S+ + P + AY SK V T A E G+RVN + PG T +
Sbjct: 150 NPSIINIGSLTVEEVTMPNISAYAASKGGVASLTKALAKEWGRYGIRVNVIAPGWYRTKM 209
Query: 232 HKNSGIDQQAYQNFLERSKETHALGRVGNPEEVAKAIAFLASDDASFTTGEHLTVDGG 289
+ D + L+R LGR G PE++ FLAS++A + TG+ + VDGG
Sbjct: 210 TEAVFSDPEKLDYMLKRI----PLGRTGVPEDLKGVAVFLASEEAKYVTGQIIFVDGG 263
>2b4q_A Rhamnolipids biosynthesis 3-oxoacyl-[acyl- carrier-protein]
reductase; RHLG-NADP complex, oxidoreductase; HET: NAP;
2.30A {Pseudomonas aeruginosa}
Length = 276
Score = 170 bits (434), Expect = 6e-52
Identities = 66/300 (22%), Positives = 114/300 (38%), Gaps = 64/300 (21%)
Query: 2 NFTGKVILVTGASSGIGAATALHLAKLDAKLAITGRNVEQLNKVSESCQSVSKNKPLVIQ 61
+ G++ LVTG S GIG A L + A++ I R+ E + + I
Sbjct: 26 SLAGRIALVTGGSRGIGQMIAQGLLEAGARVFICARDAEACADTATRLSA--YGDCQAIP 83
Query: 62 ADLTSEEDTKRIIDTVVKHYQKLNVLVNNAVTGASSGIGAATALHLAKLDAKLAITGRNV 121
ADL+SE +R+ + + +L++LVNNA G
Sbjct: 84 ADLSSEAGARRLAQALGELSARLDILVNNA------GT---------------------- 115
Query: 122 EQLNKVSESCQSVSKNKPLVIQADLTSEEDTKRIIDT-----------VVKHYQKLNVLV 170
S + ++++ ++ ++ +
Sbjct: 116 -------------SWGAA----LESYPVSGWEKVMQLNVTSVFSCIQQLLPLLRR-SASA 157
Query: 171 NNAGNIVNVSSVNGLRSFPG-VLAYCVSKAAVDQFTSCTALELASKGVRVNSVNPGVTLT 229
N ++N+ SV G+ + AY SKAA+ Q + A EL + + VN + PG +
Sbjct: 158 ENPARVINIGSVAGISAMGEQAYAYGPSKAALHQLSRMLAKELVGEHINVNVIAPGRFPS 217
Query: 230 NLHKNSGIDQQAYQNFLERSKETHALGRVGNPEEVAKAIAFLASDDASFTTGEHLTVDGG 289
+ ++ D QA + +GR G PEE+A LA ++ TG + +DGG
Sbjct: 218 RMTRHIANDPQALEADSASI----PMGRWGRPEEMAALAISLAGTAGAYMTGNVIPIDGG 273
>3pk0_A Short-chain dehydrogenase/reductase SDR; ssgcid, structural
genomics, seattle structural genomics CEN infectious
disease; 1.75A {Mycobacterium smegmatis}
Length = 262
Score = 168 bits (429), Expect = 2e-51
Identities = 64/289 (22%), Positives = 115/289 (39%), Gaps = 46/289 (15%)
Query: 2 NFTGKVILVTGASSGIGAATALHLAKLDAKLAITGRNVEQLNKVSESCQSVSKNKPLVIQ 61
+ G+ ++VTG + GIG A A+ A +A+ GR+ ++ + K + +Q
Sbjct: 7 DLQGRSVVVTGGTKGIGRGIATVFARAGANVAVAGRSTADIDACVADLDQLGSGKVIGVQ 66
Query: 62 ADLTSEEDTKRIIDTVVKHYQKLNVLVNNAVTGASSGIGAATALHLAKLDAKLAITGRNV 121
D++ + V+ + ++V+ NA G+ L
Sbjct: 67 TDVSDRAQCDALAGRAVEEFGGIDVVCANA------GVFPDAPLATMTP----------- 109
Query: 122 EQLNKVSESCQSVSKNKPLVIQADLTSEEDTKRIIDTVVKHYQKLNVLVNNAGNIVNVSS 181
EQLN + ++ T + + + +G +V SS
Sbjct: 110 EQLNGI--------------FAVNVNG---TFYAVQACLDALIA-----SGSGRVVLTSS 147
Query: 182 VNGLRS-FPGVLAYCVSKAAVDQFTSCTALELASKGVRVNSVNPGVTLTNLHKNSGIDQQ 240
+ G + +PG Y +KAA F A+ELA + VN++ PG +T +G +
Sbjct: 148 ITGPITGYPGWSHYGATKAAQLGFMRTAAIELAPHKITVNAIMPGNIMTEGLLENGEEYI 207
Query: 241 AYQNFLERSKETHALGRVGNPEEVAKAIAFLASDDASFTTGEHLTVDGG 289
+ G +G PE++ AFLA+ +A + TG+ + VDGG
Sbjct: 208 ------ASMARSIPAGALGTPEDIGHLAAFLATKEAGYITGQAIAVDGG 250
>3rkr_A Short chain oxidoreductase; rossmann fold; HET: NAP; 2.42A
{Uncultured bacterium BIO5}
Length = 262
Score = 168 bits (428), Expect = 3e-51
Identities = 62/281 (22%), Positives = 103/281 (36%), Gaps = 53/281 (18%)
Query: 2 NFTGKVILVTGASSGIGAATALHLAKLDAKLAITGRNVEQLNKVSESCQSVSKNKPLVIQ 61
+ +G+V +VTGAS GIGAA A L L A++ +T R+VE+L V + + +
Sbjct: 26 SLSGQVAVVTGASRGIGAAIARKLGSLGARVVLTARDVEKLRAVEREIVA-AGGEAESHA 84
Query: 62 ADLTSEEDTKRIIDTVVKHYQKLNVLVNNAVTGASSGIGAATALHLAKLDAKLAITGRNV 121
DL+ + V+ + + +VLVNNA G+G L +
Sbjct: 85 CDLSHSDAIAAFATGVLAAHGRCDVLVNNA------GVGWFGGP-LHTMK---------P 128
Query: 122 EQLNKVSESCQSVSKNKPLVIQADLTSEEDTKRIIDTVVKHYQKLNVLVNNAGNIVNVSS 181
+ + + I +L + ++ G+I+N+SS
Sbjct: 129 AEWDAL--------------IAVNLKA---PYLLLRAFAPAMIA-----AKRGHIINISS 166
Query: 182 VNGLRSFPGVLAYCVSKAAVDQFTSCTALELASKGVRVNSVNPGVTLTNLHKNSGIDQQA 241
+ G AY SK ++ + A EL VRV+ V PG T
Sbjct: 167 LAGKNPVADGAAYTASKWGLNGLMTSAAEELRQHQVRVSLVAPGSVRTEF---------- 216
Query: 242 YQNFLERSKETHALGRVGNPEEVAKAIAFLASDDASFTTGE 282
+ P+++A +A LA+ E
Sbjct: 217 ----GVGLSAKKSALGAIEPDDIADVVALLATQADQSFISE 253
>3pgx_A Carveol dehydrogenase; structural genomics, seattle structural
genomics center for infectious disease, ssgcid; HET:
NAD; 1.85A {Mycobacterium avium}
Length = 280
Score = 168 bits (429), Expect = 3e-51
Identities = 59/310 (19%), Positives = 108/310 (34%), Gaps = 67/310 (21%)
Query: 2 NFTGKVILVTGASSGIGAATALHLAKLDAKLAITGRNVEQLNKVSESCQSVSKNKPLV-- 59
+ G+V +TGA+ G G + A+ LA A + V+ + S
Sbjct: 12 SLQGRVAFITGAARGQGRSHAVRLAAEGADIIACDICAPVSASVTYAPASPEDLDETARL 71
Query: 60 ----------IQADLTSEEDTKRIIDTVVKHYQKLNVLVNNAVTGASSGIGAATALHLAK 109
D+ + + ++ ++ + +L+V+V NA G+ + +
Sbjct: 72 VEDQGRKALTRVLDVRDDAALRELVADGMEQFGRLDVVVANA------GVLSWGRVWE-- 123
Query: 110 LDAKLAITGRNVEQLNKVSESCQSVSKNKPLVIQADLTSEEDTKRIIDT-------VVKH 162
++E +I ++
Sbjct: 124 -------------------------------------LTDEQWDTVIGVNLTGTWRTLRA 146
Query: 163 YQKLNVLVNNAGNIVNVSSVNGLRSFPGVLAYCVSKAAVDQFTSCTALELASKGVRVNSV 222
+ N G+IV VSS GL++ PG Y SK + T+ A+EL G+RVNS+
Sbjct: 147 TVPAMIEAGNGGSIVVVSSSAGLKATPGNGHYSASKHGLTALTNTLAIELGEYGIRVNSI 206
Query: 223 NPGVTLTNLHKNSGIDQQAYQN---FLERSKETHALGRVGNPEEVAKAIAFLASDDASFT 279
+P T + + + + ++ +EVA +A+LA D +
Sbjct: 207 HPYSVETPMIEPEAMMEIFARHPSFVHSFPPMPVQPNGFMTADEVADVVAWLAGDGSGTL 266
Query: 280 TGEHLTVDGG 289
TG + VD G
Sbjct: 267 TGTQIPVDKG 276
>3gdg_A Probable NADP-dependent mannitol dehydrogenase; rossmann fold,
beta-alpha-beta motifs, open twisted sheet, A NADP,
oxidoreductase; 2.30A {Cladosporium herbarum} PDB:
3gdf_A
Length = 267
Score = 168 bits (427), Expect = 4e-51
Identities = 71/301 (23%), Positives = 124/301 (41%), Gaps = 54/301 (17%)
Query: 1 MNFTGKVILVTGAS--SGIGAATALHLAKLDAKLAITG-RNVEQLNKVSESCQSVSKNKP 57
++ GKV++VTGAS G+G A A++ A +AIT + + + + K
Sbjct: 16 LSLKGKVVVVTGASGPKGMGIEAARGCAEMGAAVAITYASRAQGAEENVKELEKTYGIKA 75
Query: 58 LVIQADLTSEEDTKRIIDTVVKHYQKLNVLVNNAVTGASSGIGAATALHLAKLDAKLAIT 117
+ + S E ++++ VV + +++ + NA G A + + LD +
Sbjct: 76 KAYKCQVDSYESCEKLVKDVVADFGQIDAFIANA------GATADSGI----LDGSV--- 122
Query: 118 GRNVEQLNKVSESCQSVSKNKPLVIQADLTSEEDTKRIIDTVVKHYQKLNVLVNNAGNIV 177
E N V +Q DL T V H+++ G++V
Sbjct: 123 ----EAWNHV--------------VQVDLNG---TFHCAKAVGHHFKE-----RGTGSLV 156
Query: 178 NVSSVNGLRS--FPGVLAYCVSKAAVDQFTSCTALELASKGVRVNSVNPGVTLTNLHKNS 235
+S++G + +Y V+KA A E RVNS++PG T L +
Sbjct: 157 ITASMSGHIANFPQEQTSYNVAKAGCIHMARSLANEWRDFA-RVNSISPGYIDTGL--SD 213
Query: 236 GIDQQAYQNFLERSKETHALGRVGNPEEVAKAIAFLASDDASFTTGEHLTVDGGRHAMCP 295
+ ++ Q + +GR G +E+ A + ASD +++TTG L +DGG
Sbjct: 214 FVPKETQQLWHSMI----PMGRDGLAKELKGAYVYFASDASTYTTGADLLIDGG---YTT 266
Query: 296 R 296
R
Sbjct: 267 R 267
>3uve_A Carveol dehydrogenase ((+)-trans-carveol dehydrog; ssgcid,
structural genomics, seattle structural genomics CEN
infectious disease; HET: NAD PG4; 1.55A {Mycobacterium
avium} PDB: 3uwr_A*
Length = 286
Score = 168 bits (427), Expect = 9e-51
Identities = 72/318 (22%), Positives = 112/318 (35%), Gaps = 75/318 (23%)
Query: 3 FTGKVILVTGASSGIGAATALHLAKLDAKLAITGRNVEQLNKVSESCQSVSKNKPL---- 58
GKV VTGA+ G G + A+ LA+ A + V ++ S + L
Sbjct: 9 VEGKVAFVTGAARGQGRSHAVRLAQEGADIIAVDICKPIRAGVVDTAIPASTPEDLAETA 68
Query: 59 -----------VIQADLTSEEDTKRIIDTVVKHYQKLNVLVNNAVTGASSGIGAATALHL 107
+ D+ + K +D+ V+ +L+++V NA GIG
Sbjct: 69 DLVKGHNRRIVTAEVDVRDYDALKAAVDSGVEQLGRLDIIVANA------GIGNGGDT-- 120
Query: 108 AKLDAKLAITGRNVEQLNKVSESCQSVSKNKPLVIQADLTSEEDTKRIIDT-------VV 160
D TSEED +ID V
Sbjct: 121 ------------------------------------LDKTSEEDWTEMIDINLAGVWKTV 144
Query: 161 KHYQKLNVLVNNAGNIVNVSSVNGLRSFPGVLAYCVSKAAVDQFTSCTALELASKGVRVN 220
K + G+I+ SSV GL+++P Y +K V +EL +RVN
Sbjct: 145 KAGVPHMIAGGRGGSIILTSSVGGLKAYPHTGHYVAAKHGVVGLMRAFGVELGQHMIRVN 204
Query: 221 SVNPGVTLTNLHKNSGIDQQAYQNFLERSKETHALG---------RVGNPEEVAKAIAFL 271
SV+P T + N G + + + A P +++ A+ F
Sbjct: 205 SVHPTHVKTPMLHNEGTFKMFRPDLENPGPDDMAPICQMFHTLPIPWVEPIDISNAVLFF 264
Query: 272 ASDDASFTTGEHLTVDGG 289
ASD+A + TG L +D G
Sbjct: 265 ASDEARYITGVTLPIDAG 282
>2ekp_A 2-deoxy-D-gluconate 3-dehydrogenase; structural genomics, NPPSFA,
nation project on protein structural and functional
analyses; HET: NAD; 1.15A {Thermus thermophilus} PDB:
1x1e_A* 2ekq_A
Length = 239
Score = 166 bits (422), Expect = 1e-50
Identities = 67/297 (22%), Positives = 110/297 (37%), Gaps = 77/297 (25%)
Query: 6 KVILVTGASSGIGAATALHLAKLDAKLAITGRNVEQLNKVSESCQSVSKNKPLVIQADLT 65
+ LVTG S GIG A A L ++AI RN E+ + + + + DL
Sbjct: 3 RKALVTGGSRGIGRAIAEALVARGYRVAIASRNPEEAAQSLGA---------VPLPTDL- 52
Query: 66 SEEDTKRIIDTVVKHYQKLNVLVNNAVTGASSGIGAATALHLAKLDAKLAITGRNVEQLN 125
++D K ++ ++ L+VLV+ A +
Sbjct: 53 EKDDPKGLVKRALEALGGLHVLVHAA------AV-------------------------- 80
Query: 126 KVSESCQSVSKNKPLVIQADLTSEEDTKRIIDT-----------VVKHYQKLNVLVNNAG 174
+ KP + S E+ +R++ H + G
Sbjct: 81 ---------NVRKPAL----ELSYEEWRRVLYLHLDVAFLLAQAAAPHMAE-----AGWG 122
Query: 175 NIVNVSSVNGLRS--FPGVLAYCVSKAAVDQFTSCTALELASKGVRVNSVNPGVTLTNLH 232
++ + SV + + AY +K A+ T A E A G+RVN + PG T
Sbjct: 123 RVLFIGSVTTFTAGGPVPIPAYTTAKTALLGLTRALAKEWARLGIRVNLLCPGYVETEFT 182
Query: 233 KNSGIDQQAYQNFLERSKETHALGRVGNPEEVAKAIAFLASDDASFTTGEHLTVDGG 289
+ + Y+ R +GR PEE+A+ A L D+A + TG+ + VDGG
Sbjct: 183 LPLRQNPELYEPITARI----PMGRWARPEEIARVAAVLCGDEAEYLTGQAVAVDGG 235
>3rih_A Short chain dehydrogenase or reductase; structural genomics,
seattle structural genomics center for infectious
disease, ssgcid; HET: PG5; 2.15A {Mycobacterium
abscessus}
Length = 293
Score = 167 bits (425), Expect = 2e-50
Identities = 70/290 (24%), Positives = 121/290 (41%), Gaps = 46/290 (15%)
Query: 1 MNFTGKVILVTGASSGIGAATALHLAKLDAKLAITGRNVEQLNKVSESCQSVSKNKPLVI 60
+ + + +LVTG + GIG A A+ A +A+ R+ +L+ V+ + + +
Sbjct: 37 FDLSARSVLVTGGTKGIGRGIATVFARAGANVAVAARSPRELSSVTAELGELGAGNVIGV 96
Query: 61 QADLTSEEDTKRIIDTVVKHYQKLNVLVNNAVTGASSGIGAATALHLAKLDAKLAITGRN 120
+ D++ TVV + L+V+ NA GI L
Sbjct: 97 RLDVSDPGSCADAARTVVDAFGALDVVCANA------GIFPEARLDTMTP---------- 140
Query: 121 VEQLNKVSESCQSVSKNKPLVIQADLTSEEDTKRIIDTVVKHYQKLNVLVNNAGNIVNVS 180
EQL++V + ++ T + + + G ++ S
Sbjct: 141 -EQLSEV--------------LDVNVKG---TVYTVQACLAPLTA-----SGRGRVILTS 177
Query: 181 SVNGLRS-FPGVLAYCVSKAAVDQFTSCTALELASKGVRVNSVNPGVTLTNLHKNSGIDQ 239
S+ G + +PG Y SKAA F A+ELA +GV VN++ PG LT + G +
Sbjct: 178 SITGPVTGYPGWSHYGASKAAQLGFMRTAAIELAPRGVTVNAILPGNILTEGLVDMGEEY 237
Query: 240 QAYQNFLERSKETHALGRVGNPEEVAKAIAFLASDDASFTTGEHLTVDGG 289
+ +G +G+P ++ AFLA+D+A + TG+ + VDGG
Sbjct: 238 I------SGMARSIPMGMLGSPVDIGHLAAFLATDEAGYITGQAIVVDGG 281
>3t7c_A Carveol dehydrogenase; structural genomics, seattle structural
genomics center for infectious disease, ssgcid; HET:
NAD; 1.95A {Mycobacterium avium}
Length = 299
Score = 167 bits (425), Expect = 2e-50
Identities = 67/315 (21%), Positives = 116/315 (36%), Gaps = 73/315 (23%)
Query: 3 FTGKVILVTGASSGIGAATALHLAKLDAKLAIT------------GRNVEQLNKVSESCQ 50
GKV +TGA+ G G + A+ LA+ A + + L + +
Sbjct: 26 VEGKVAFITGAARGQGRSHAITLAREGADIIAIDVCKQLDGVKLPMSTPDDLAETVRQVE 85
Query: 51 SVSKNKPLVIQADLTSEEDTKRIIDTVVKHYQKLNVLVNNAVTGASSGIGAATALHLAKL 110
++ + + + Q D+ + + +D V +L++++ NA + A+ L ++
Sbjct: 86 ALGR-RIIASQVDVRDFDAMQAAVDDGVTQLGRLDIVLANA------AL-ASEGTRLNRM 137
Query: 111 DAKLAITGRNVEQLNKVSESCQSVSKNKPLVIQADLTSEEDTKRIIDT-------VVKHY 163
D + + +ID +
Sbjct: 138 D-------------------------------------PKTWRDMIDVNLNGAWITARVA 160
Query: 164 QKLNVLVNNAGNIVNVSSVNGLRSFPGVLAYCVSKAAVDQFTSCTALELASKGVRVNSVN 223
+ G+IV SS+ GLR + Y SK + ALEL + +RVN V
Sbjct: 161 IPHIMAGKRGGSIVFTSSIGGLRGAENIGNYIASKHGLHGLMRTMALELGPRNIRVNIVC 220
Query: 224 PGVTLTNLHKN--------SGIDQQAYQNFLERSKETHALG-RVGNPEEVAKAIAFLASD 274
P T + N ++ ++F S++ H L P +++ AI FL SD
Sbjct: 221 PSSVATPMLLNEPTYRMFRPDLENPTVEDFQVASRQMHVLPIPYVEPADISNAILFLVSD 280
Query: 275 DASFTTGEHLTVDGG 289
DA + TG L VDGG
Sbjct: 281 DARYITGVSLPVDGG 295
>3rwb_A TPLDH, pyridoxal 4-dehydrogenase; short chain
dehydrogenase/reductase, 4-pyridoxola NAD+,
oxidoreductase; HET: NAD 4PL; 1.70A {Mesorhizobium loti}
PDB: 3ndr_A* 3nug_A*
Length = 247
Score = 165 bits (420), Expect = 3e-50
Identities = 73/287 (25%), Positives = 111/287 (38%), Gaps = 47/287 (16%)
Query: 3 FTGKVILVTGASSGIGAATALHLAKLDAKLAITGRNVEQLNKVSESCQSVSKNKPLVIQA 62
GK LVTGA+ GIG A A LA A + ++ N E + S K I A
Sbjct: 4 LAGKTALVTGAAQGIGKAIAARLAADGATVIVSDINAEGAKAAAASIGK----KARAIAA 59
Query: 63 DLTSEEDTKRIIDTVVKHYQKLNVLVNNAVTGASSGIGAATALHLAKLDAKLAITGRNVE 122
D++ K + + +++LVNNA I A L +
Sbjct: 60 DISDPGSVKALFAEIQALTGGIDILVNNA------SIVPFVAWDDVDL-----------D 102
Query: 123 QLNKVSESCQSVSKNKPLVIQADLTSEEDTKRIIDTVVKHYQKLNVLVNNAGNIVNVSSV 182
K +I +LT T + + AG +++++S
Sbjct: 103 HWRK--------------IIDVNLTG---TFIVTRAGTDQMRA----AGKAGRVISIASN 141
Query: 183 NGLRSFPGVLAYCVSKAAVDQFTSCTALELASKGVRVNSVNPGVTLTNLHKNSGIDQQAY 242
P + AY +K V FT A EL + N+V PG+ ++ K S ++
Sbjct: 142 TFFAGTPNMAAYVAAKGGVIGFTRALATELGKYNITANAVTPGLIESDGVKASPHNEAF- 200
Query: 243 QNFLERSKETHALGRVGNPEEVAKAIAFLASDDASFTTGEHLTVDGG 289
+ A+ G PE +A ++FLASDDA + TG+ L VD G
Sbjct: 201 ----GFVEMLQAMKGKGQPEHIADVVSFLASDDARWITGQTLNVDAG 243
>3sju_A Keto reductase; short-chain dehydrogenase, oxidoreductase; HET:
NDP; 2.40A {Streptomyces griseoruber}
Length = 279
Score = 162 bits (413), Expect = 7e-49
Identities = 63/248 (25%), Positives = 94/248 (37%), Gaps = 51/248 (20%)
Query: 92 VTGASSGIGAATALHLAKLDAKLAITGRNVEQLNKVSESCQSVSKNKPLVIQADLTSEED 151
VTG SSGIG A A LA + R+ + ++ + ++ + + D+TS ++
Sbjct: 29 VTGVSSGIGLAVARTLAARGIAVYGCARDAKNVSAAVDGLRA-AGHDVDGSSCDVTSTDE 87
Query: 152 TKRIIDTVVKHYQKLNVLVNNAG---------------------N--------------- 175
+ V+ + + +LVN+AG N
Sbjct: 88 VHAAVAAAVERFGPIGILVNSAGRNGGGETADLDDALWADVLDTNLTGVFRVTREVLRAG 147
Query: 176 ---------IVNVSSVNGLRSFPGVLAYCVSKAAVDQFTSCTALELASKGVRVNSVNPGV 226
IVN++S G + Y SK V FT ELA G+ VN+V PG
Sbjct: 148 GMREAGWGRIVNIASTGGKQGVMYAAPYTASKHGVVGFTKSVGFELAKTGITVNAVCPGY 207
Query: 227 TLTNL-----HKNSGIDQQAYQNFLERSKETHALGRVGNPEEVAKAIAFLASDDASFTTG 281
T + + Q ER LGR PEEVA + +L +D A+ T
Sbjct: 208 VETPMAERVREGYARHWGVTEQEVHERFNAKIPLGRYSTPEEVAGLVGYLVTDAAASITA 267
Query: 282 EHLTVDGG 289
+ L V GG
Sbjct: 268 QALNVCGG 275
>3cxt_A Dehydrogenase with different specificities; rossman fold,
oxidoreductase; HET: NAP GKR; 1.90A {Streptococcus suis}
PDB: 3cxr_A* 3o03_A*
Length = 291
Score = 162 bits (413), Expect = 1e-48
Identities = 65/303 (21%), Positives = 108/303 (35%), Gaps = 72/303 (23%)
Query: 4 TGKVILVTGASSGIGAATALHLAKLDAKLAITGRNVEQLNKVSESCQSVSKNKPLVIQAD 63
GK+ LVTGAS GIG A A AK A + N E +++ + ++ D
Sbjct: 33 KGKIALVTGASYGIGFAIASAYAKAGATIVFNDINQELVDRGMAAYKAAGI-NAHGYVCD 91
Query: 64 LTSEEDTKRIIDTVVKHYQKLNVLVNNAVTGASSGIGAATALHLAKLDAKLAITGRNVEQ 123
+T E+ + ++ + +++LVNNA GI
Sbjct: 92 VTDEDGIQAMVAQIESEVGIIDILVNNA------GI------------------------ 121
Query: 124 LNKVSESCQSVSKNKPLVIQADLTSEEDTKRIIDT-----------VVKHYQKLNVLVNN 172
+ P++ ++ + +++ID V+ K
Sbjct: 122 -----------IRRVPMI---EM-TAAQFRQVIDIDLNAPFIVSKAVIPSMIK-----KG 161
Query: 173 AGNIVNVSSVNGLRSFPGVLAYCVSKAAVDQFTSCTALELASKGVRVNSVNPGVTLTNL- 231
G I+N+ S+ V AY +K + T A E ++ N + PG T
Sbjct: 162 HGKIINICSMMSELGRETVSAYAAAKGGLKMLTKNIASEYGEANIQCNGIGPGYIATPQT 221
Query: 232 -----HKNSGIDQQAYQNFLERSKETHALGRVGNPEEVAKAIAFLASDDASFTTGEHLTV 286
+ G Q + ++ R G E++ FLASD ++F G L V
Sbjct: 222 APLRELQKDGSRHPFDQFIIAKT----PAARWGEAEDLMGPAVFLASDASNFVNGHILYV 277
Query: 287 DGG 289
DGG
Sbjct: 278 DGG 280
>3orf_A Dihydropteridine reductase; alpha-beta-alpha sandwich, rossmann
fold, oxidoreductase (AC NADH), NADH binding,
oxidoreductase; HET: NAD; 2.16A {Dictyostelium
discoideum}
Length = 251
Score = 160 bits (408), Expect = 2e-48
Identities = 42/303 (13%), Positives = 70/303 (23%), Gaps = 92/303 (30%)
Query: 1 MNFTGKVILVTGASSGIGAATALHLAKLDAKLAITGRNVEQLNKVSESCQSVSKNKPLVI 60
+ K ILV G S +GA S
Sbjct: 18 GSHMSKNILVLGGSGALGAEVVKFFKSKSWNTISIDFRENPNADHS-------------F 64
Query: 61 QADLTSEEDTKRIIDTVVKHYQKLNVLVNNAVTGASSGIGAATALHLAKLDAKLAITGRN 120
+ EE+ K +I+ + K++ V A G +
Sbjct: 65 TIKDSGEEEIKSVIEKINSKSIKVDTFVCAA------GGWSGGNA--------------- 103
Query: 121 VEQLNKVSESCQSVSKNKPLVIQADLTSEEDTKRIIDT-----------VVKHYQKLNVL 169
+ + K +ID K +
Sbjct: 104 -----------------------SSDEFLKSVKGMIDMNLYSAFASAHIGAKLLNQ---- 136
Query: 170 VNNAGNIVNVSSVNGLRSFPGVLAYCVSKAAVDQFTSCTALELA--SKGVRVNSVNPGVT 227
G V + L G++AY +KAA A E G + P
Sbjct: 137 ---GGLFVLTGASAALNRTSGMIAYGATKAATHHIIKDLASENGGLPAGSTSLGILPVTL 193
Query: 228 LTNLHKNSGIDQQAYQNFLERSKETHALGRVGNPEEVAKAI-AFLASDDASFTTGEHLTV 286
T ++ D EVA+ + + + D+ T G +
Sbjct: 194 DTPTNRKYMSDAN--------------FDDWTPLSEVAEKLFEWSTNSDSRPTNGSLVKF 239
Query: 287 DGG 289
+
Sbjct: 240 ETK 242
>1uls_A Putative 3-oxoacyl-acyl carrier protein reductase; structural
genomics, riken structural genomics/proteomics
initiative, RSGI; 2.40A {Thermus thermophilus} SCOP:
c.2.1.2
Length = 245
Score = 159 bits (406), Expect = 3e-48
Identities = 75/289 (25%), Positives = 113/289 (39%), Gaps = 52/289 (17%)
Query: 1 MNFTGKVILVTGASSGIGAATALHLAKLDAKLAITGRNVEQLNKVSESCQSVSKNKPLVI 60
M K +L+TGA+ GIG AT AK A+L L + +E+ + +
Sbjct: 1 MRLKDKAVLITGAAHGIGRATLELFAKEGARLVACDIEEGPLREAAEAVGA------HPV 54
Query: 61 QADLTSEEDTKRIIDTVVKHYQKLNVLVNNAVTGASSGIGAATALHLAKLDAKLAITGRN 120
D+ +R + H +L+ +V+ A GI
Sbjct: 55 VMDVADPASVERGFAEALAHLGRLDGVVHYA------GITRDNFHWKMP----------- 97
Query: 121 VEQLNKVSESCQSVSKNKPLVIQADLTSEEDTKRIIDTVVKHYQKLNVLVNNAGNIVNVS 180
+E V ++ +LT + + + ++ N G+IV +
Sbjct: 98 LEDWELV--------------LRVNLTG---SFLVAKAASEAMRE-----KNPGSIVLTA 135
Query: 181 SVNGLRSFPGVLAYCVSKAAVDQFTSCTALELASKGVRVNSVNPGVTLTNLHKNSGIDQQ 240
S L + G Y S A V T ALEL G+RVN++ PG T + +
Sbjct: 136 SRVYLGN-LGQANYAASMAGVVGLTRTLALELGRWGIRVNTLAPGFIETRMTAKVPEKVR 194
Query: 241 AYQNFLERSKETHALGRVGNPEEVAKAIAFLASDDASFTTGEHLTVDGG 289
E++ LGR G P EVA A FL SD++SF TG+ L VDGG
Sbjct: 195 ------EKAIAATPLGRAGKPLEVAYAALFLLSDESSFITGQVLFVDGG 237
>3i4f_A 3-oxoacyl-[acyl-carrier protein] reductase; structural genomics,
3-oxoacyl-reductase, PSI-2; 2.39A {Bacillus
thuringiensis serovar kurstakorganism_taxid}
Length = 264
Score = 160 bits (407), Expect = 4e-48
Identities = 62/298 (20%), Positives = 115/298 (38%), Gaps = 59/298 (19%)
Query: 1 MNFTGKVILVTGASSGIGAATALHLAKLDAKLAITGR-NVEQLNKVSESCQSVSKNKPLV 59
+ + L+T + G+G L + +T + + + E+ + + +
Sbjct: 3 LGRFVRHALITAGTKGLGKQVTEKLLAKGYSVTVTYHSDTTAMETMKETYKD-VEERLQF 61
Query: 60 IQADLTSEEDTKRIIDTVVKHYQKLNVLVNNAVTGASSGIGAATALHLAKLDAKLAITGR 119
+QAD+T +ED +I++ + H+ K++ L+NNA G + R
Sbjct: 62 VQADVTKKEDLHKIVEEAMSHFGKIDFLINNA--GPY-------------------VFER 100
Query: 120 NV------EQLNKVSESCQSVSKNKPLVIQADLTSEEDTKRIIDTVVKHYQKLNVLVNNA 173
++ N++ IQ +LT+ ++ VV +K N
Sbjct: 101 KKLVDYEEDEWNEM--------------IQGNLTA---VFHLLKLVVPVMRK-----QNF 138
Query: 174 GNIVNVS--SVNGLRSFPGVLAYCVSKAAVDQFTSCTALELASKGVRVNSVNPGVTLTNL 231
G I+N + + A+ +K + T A E A G+ N V PG + +
Sbjct: 139 GRIINYGFQGADSAPGWIYRSAFAAAKVGLVSLTKTVAYEEAEYGITANMVCPGDIIGEM 198
Query: 232 HKNSGIDQQAYQNFLERSKETHALGRVGNPEEVAKAIAFLASDDASFTTGEHLTVDGG 289
Q+A Q + +GR G E++A+ I+FL DD+ TG + V G
Sbjct: 199 --KEATIQEARQLKEHNT----PIGRSGTGEDIARTISFLCEDDSDMITGTIIEVTGA 250
>3pxx_A Carveol dehydrogenase; structural genomics, seattle structural
genomics center for infectious disease, ssgcid, NAD,
tuberculosis; HET: NAD; 2.00A {Mycobacterium avium}
Length = 287
Score = 160 bits (407), Expect = 8e-48
Identities = 58/330 (17%), Positives = 102/330 (30%), Gaps = 98/330 (29%)
Query: 3 FTGKVILVTGASSGIGAATALHLAKLDAKLAIT------------GRNVEQLNKVSESCQ 50
KV+LVTG + G G + A+ LA+ A + + L + +
Sbjct: 8 VQDKVVLVTGGARGQGRSHAVKLAEEGADIILFDICHDIETNEYPLATSRDLEEAGLEVE 67
Query: 51 SVSKNKPLVIQADLTSEEDTKRIIDTVVKHYQKLNVLVNNAVTGASSGIGAATALHLAKL 110
+ K + D+ R + V + KL+V+V NA GI
Sbjct: 68 KTGR-KAYTAEVDVRDRAAVSRELANAVAEFGKLDVVVANA------GICPL-------- 112
Query: 111 DAKLAITGRNVEQLNKVSESCQSVSKNKPLVIQADLTSEEDTKRIIDT-----------V 159
+ D
Sbjct: 113 ---------------------------------GAHLPVQAFADAFDVDFVGVINTVHAA 139
Query: 160 VKHYQKLNVLVNNAGNIVNVSSVNGLR-----------SFPGVLAYCVSKAAVDQFTSCT 208
+ + +I+ SV GL PG Y +K VD +T
Sbjct: 140 LPYLTS-------GASIITTGSVAGLIAAAQPPGAGGPQGPGGAGYSYAKQLVDSYTLQL 192
Query: 209 ALELASKGVRVNSVNPGVTLTNLHKNSGI--------DQQAYQNFLERSKETHALG-RVG 259
A +LA + +R N ++P T++ ++ + + + + L A+
Sbjct: 193 AAQLAPQSIRANVIHPTNVNTDMLNSAPMYRQFRPDLEAPSRADALLAFPAMQAMPTPYV 252
Query: 260 NPEEVAKAIAFLASDDASFTTGEHLTVDGG 289
+++ A+ FLASD++ + TG VD G
Sbjct: 253 EASDISNAVCFLASDESRYVTGLQFKVDAG 282
>1o5i_A 3-oxoacyl-(acyl carrier protein) reductase; TM1169, structur
genomics, JCSG, PSI, protein structure initiative, joint
CE structural genomics; HET: NAD; 2.50A {Thermotoga
maritima} SCOP: c.2.1.2
Length = 249
Score = 158 bits (402), Expect = 1e-47
Identities = 63/295 (21%), Positives = 114/295 (38%), Gaps = 61/295 (20%)
Query: 1 MNFTGKVILVTGASSGIGAATALHLAKLDAKLAITGRNVEQLNKVSESCQSVSKNKPLVI 60
+ K +LV AS GIG A A L++ A++ I RN E L + +
Sbjct: 15 LGIRDKGVLVLAASRGIGRAVADVLSQEGAEVTICARNEELLKRSGHR----------YV 64
Query: 61 QADLTSEEDTKRIIDTVVKHYQKLNVLVNNAVTGASSGIGAATALHLAKLDAKLAITGRN 120
DL + +D + + +++++LV NA G A +
Sbjct: 65 VCDLRKD------LDLLFEKVKEVDILVLNA------GGPKAGFFDELTNEDFKE----- 107
Query: 121 VEQLNKVSESCQSVSKNKPLVIQADLTSEEDTKRIIDTVVKHYQKLNVLVNNAGNIVNVS 180
I + + +I+ + ++ G IV ++
Sbjct: 108 --------------------AIDSLFLN---MIKIVRNYLPAMKE-----KGWGRIVAIT 139
Query: 181 SVNGLRSFPGVLAYCVSKAAVDQFTSCTALELASKGVRVNSVNPGVTLTNLHKNSGIDQQ 240
S + + + ++ A+ F + E+A G+ VN V PG T T K +++
Sbjct: 140 SFSVISPIENLYTSNSARMALTGFLKTLSFEVAPYGITVNCVAPGWTETERVKELLSEEK 199
Query: 241 AYQNFLERSKETHALGRVGNPEEVAKAIAFLASDDASFTTGEHLTVDGGRHAMCP 295
++ + + R+ PEE+A +AFL S+ AS+ TG+ + VDGG + P
Sbjct: 200 K-----KQVESQIPMRRMAKPEEIASVVAFLCSEKASYLTGQTIVVDGGL-SKFP 248
>2qq5_A DHRS1, dehydrogenase/reductase SDR family member 1; short-chain,
structura genomics consortium, SGC, oxidoreductase;
1.80A {Homo sapiens}
Length = 260
Score = 158 bits (401), Expect = 3e-47
Identities = 73/292 (25%), Positives = 122/292 (41%), Gaps = 51/292 (17%)
Query: 4 TGKVILVTGASSGIGAATALHLAKLDAKLAITGRNVEQLNKVSESCQSVSKNKPLVIQAD 63
G+V +VTGAS GIG AL L K A + ITGR+++ L V++ QS+ + + + D
Sbjct: 4 NGQVCVVTGASRGIGRGIALQLCKAGATVYITGRHLDTLRVVAQEAQSLG-GQCVPVVCD 62
Query: 64 LTSEEDTKRIIDTVVK-HYQKLNVLVNNAVTGASSGIGAATALHLAKLDAKLAITGRNVE 122
+ E + + + + V + +L+VLVNNA G T L+
Sbjct: 63 SSQESEVRSLFEQVDREQQGRLDVLVNNA------YAGVQTILN---------------- 100
Query: 123 QLNKVSESCQSVSKNKPLVIQADLTSEEDTKRIIDTVVK-HY------QKLNVLVNNAGN 175
++NK I + ++ HY +L ++ G
Sbjct: 101 ------------TRNKAFWET----PASMWDDINNVGLRGHYFCSVYGARL-MVPAGQGL 143
Query: 176 IVNVSSVNGLRSFPGVLAYCVSKAAVDQFTSCTALELASKGVRVNSVNPGVTLTNLHKNS 235
IV +SS L+ + + Y V KAA D+ + A EL GV S+ PG+ T L K
Sbjct: 144 IVVISSPGSLQ-YMFNVPYGVGKAACDKLAADCAHELRRHGVSCVSLWPGIVQTELLKEH 202
Query: 236 GIDQQAYQNFLERSKETHALGRVGNPEEVAKAIAFLASD-DASFTTGEHLTV 286
++ Q+ + + ++ E K + LA+D + +G+ L
Sbjct: 203 MAKEEVLQDPVLKQFKSA-FSSAETTELSGKCVVALATDPNILSLSGKVLPS 253
>3sx2_A Putative 3-ketoacyl-(acyl-carrier-protein) reduct; ssgcid,
3-ketoacyl-(acyl-carrier-protein) reductase, mycobac
paratuberculosis; HET: NAD; 1.50A {Mycobacterium avium
subsp}
Length = 278
Score = 158 bits (402), Expect = 3e-47
Identities = 69/315 (21%), Positives = 107/315 (33%), Gaps = 79/315 (25%)
Query: 3 FTGKVILVTGASSGIGAATALHLAKLDAKLAIT------------GRNVEQLNKVSESCQ 50
TGKV +TGA+ G G A A+ LA A + E+L + +
Sbjct: 11 LTGKVAFITGAARGQGRAHAVRLAADGADIIAVDLCDQIASVPYPLATPEELAATVKLVE 70
Query: 51 SVSKNKPLVIQADLTSEEDTKRIIDTVVKHYQKLNVLVNNAVTGASSGIGAATALHLAKL 110
+ + + QAD+ E + + +L+++V NA GI +
Sbjct: 71 DIGS-RIVARQADVRDRESLSAALQAGLDELGRLDIVVANA------GIAPMS------- 116
Query: 111 DAKLAITGRNVEQLNKVSESCQSVSKNKPLVIQADLTSEEDTKRIIDT-------VVKHY 163
++ +ID +K
Sbjct: 117 ------------------------------------AGDDGWHDVIDVNLTGVYHTIKVA 140
Query: 164 QKLNVLVNNAGNIVNVSSVNGLRSF----PGVLAYCVSKAAVDQFTSCTALELASKGVRV 219
V G+IV +SS GL PG + Y +K V A LA + +RV
Sbjct: 141 IPTLVKQGTGGSIVLISSSAGLAGVGSADPGSVGYVAAKHGVVGLMRVYANLLAGQMIRV 200
Query: 220 NSVNPGVTLTNLHKNSGI-----DQQAYQNFLERSKETHALGRVGNPEEVAKAIAFLASD 274
NS++P T + N A + + + PE+VA A+A+L SD
Sbjct: 201 NSIHPSGVETPMINNEFTREWLAKMAAATDTPGAMGNAMPVEVLA-PEDVANAVAWLVSD 259
Query: 275 DASFTTGEHLTVDGG 289
A + TG L VD G
Sbjct: 260 QARYITGVTLPVDAG 274
>3uf0_A Short-chain dehydrogenase/reductase SDR; gluconate, gluconate
5-dehydratase, NAD(P) dependent, enzyme initiative, EFI,
oxidoreductase; HET: NAP; 2.00A {Beutenbergia cavernae}
Length = 273
Score = 158 bits (402), Expect = 3e-47
Identities = 73/299 (24%), Positives = 107/299 (35%), Gaps = 72/299 (24%)
Query: 4 TGKVILVTGASSGIGAATALHLAKLDAKLAITGRNVEQLNKVSESCQSVSKN--KPLVIQ 61
G+ +VTGA SGIG A A A+ A + GR + V E ++ +
Sbjct: 30 AGRTAVVTGAGSGIGRAIAHGYARAGAHVLAWGRT----DGVKEVADEIADGGGSAEAVV 85
Query: 62 ADLTSEEDTKRIIDTVVKHYQKLNVLVNNAVTGASSGIGAATALHLAKLDAKLAITGRNV 121
ADL E + + + ++++VLVNNA GI
Sbjct: 86 ADLADLEGAANVAEEL-AATRRVDVLVNNA------GI---------------------- 116
Query: 122 EQLNKVSESCQSVSKNKPLVIQADLTSEEDTKRIIDT-----------VVKHYQKLNVLV 170
P A+ S + ++
Sbjct: 117 -------------IARAP----AEEVSLGRWREVLTVNLDAAWVLSRSFGTAMLA----- 154
Query: 171 NNAGNIVNVSSVNGLRSFPGVLAYCVSKAAVDQFTSCTALELASKGVRVNSVNPGVTLTN 230
+ +G IV ++S+ + V AY SK AV T A E A +GV VN++ PG +T
Sbjct: 155 HGSGRIVTIASMLSFQGGRNVAAYAASKHAVVGLTRALASEWAGRGVGVNALAPGYVVTA 214
Query: 231 LHKNSGIDQQAYQNFLERSKETHALGRVGNPEEVAKAIAFLASDDASFTTGEHLTVDGG 289
D + R GR PE++ FLASD AS+ G+ L VDGG
Sbjct: 215 NTAALRADDERAAEITARIP----AGRWATPEDMVGPAVFLASDAASYVHGQVLAVDGG 269
>2bd0_A Sepiapterin reductase; oxidoreductase; HET: NAP BIO; 1.70A
{Chlorobium tepidum} SCOP: c.2.1.2
Length = 244
Score = 155 bits (394), Expect = 2e-46
Identities = 58/289 (20%), Positives = 100/289 (34%), Gaps = 65/289 (22%)
Query: 1 MNFTGKVILVTGASSGIGAATALHLAKLDAK-------LAITGRNVEQLNKVSESCQSVS 53
M ++L+TGA GIG A AL A+ L ++ R L K+S C++
Sbjct: 1 MK---HILLITGAGKGIGRAIALEFARAARHHPDFEPVLVLSSRTAADLEKISLECRAEG 57
Query: 54 KNKPLVIQADLTSEEDTKRIIDTVVKHYQKLNVLVNNAVTGASSGIGAATALHLAKLDAK 113
I AD++ D +R+ +V+ Y ++ LVNNA G+G AL
Sbjct: 58 -ALTDTITADISDMADVRRLTTHIVERYGHIDCLVNNA------GVGRFGALSDLT---- 106
Query: 114 LAITGRNVEQLNKVSESCQSVSKNKPLVIQADLTSEEDTKRIIDTVVKHYQKLNVLVNNA 173
E + + +L T + + ++ ++
Sbjct: 107 -------EEDFDYT--------------MNTNLKG---TFFLTQALFALMER-----QHS 137
Query: 174 GNIVNVSSVNGLRSFPGVLAYCVSKAAVDQFTSCTALELASKGVRVNSVNPGVTLTNLHK 233
G+I ++SV ++F YC+SK L VR+ V PG T +
Sbjct: 138 GHIFFITSVAATKAFRHSSIYCMSKFGQRGLVETMRLYARKCNVRITDVQPGAVYTPM-- 195
Query: 234 NSGIDQQAYQNFLERSKETHALGRVGNPEEVAKAIAFLASDDASFTTGE 282
+D + + PE++A + + E
Sbjct: 196 WGKVDDEMQALMMM-------------PEDIAAPVVQAYLQPSRTVVEE 231
>3f9i_A 3-oxoacyl-[acyl-carrier-protein] reductase;
3-ketoacyl-(acyl-carrier-protein) reductase, FAT
biosynthesis, lipid synthesis, NADP; 2.25A {Rickettsia
prowazekii}
Length = 249
Score = 155 bits (394), Expect = 3e-46
Identities = 89/290 (30%), Positives = 140/290 (48%), Gaps = 55/290 (18%)
Query: 1 MNFTGKVILVTGASSGIGAATALHLAKLDAKLAITGRNVEQLNKVSESCQSVSKNKPLVI 60
++ TGK L+TGASSGIG+A A L KL +K+ I+G N E+L + + K+ +
Sbjct: 10 IDLTGKTSLITGASSGIGSAIARLLHKLGSKVIISGSNEEKLKSLGNAL----KDNYTIE 65
Query: 61 QADLTSEEDTKRIIDTVVKHYQKLNVLVNNAVTGASSGIGAATALHLAKLDAKLAITGR- 119
+L ++E+ ++ L++LV NA GI T+ D LAI R
Sbjct: 66 VCNLANKEE----CSNLISKTSNLDILVCNA------GI---TS------D-TLAI--RM 103
Query: 120 NVEQLNKVSESCQSVSKNKPLVIQADLTSEEDTKRIIDTVVKHYQKLNVLVNNAGNIVNV 179
+ +K VI +L + + +K + G I+N+
Sbjct: 104 KDQDFDK--------------VIDINLKA---NFILNREAIKKMIQ-----KRYGRIINI 141
Query: 180 SSVNGLRSFPGVLAYCVSKAAVDQFTSCTALELASKGVRVNSVNPGVTLTNLHKNSGIDQ 239
SS+ G+ PG YC SKA + T + E+A++G+ VN+V PG +++ Q
Sbjct: 142 SSIVGIAGNPGQANYCASKAGLIGMTKSLSYEVATRGITVNAVAPGFIKSDMTDKLNEKQ 201
Query: 240 QAYQNFLERSKETHALGRVGNPEEVAKAIAFLASDDASFTTGEHLTVDGG 289
+ E + LG G PE+VA A+AFLAS++AS+ TG+ L V+GG
Sbjct: 202 R------EAIVQKIPLGTYGIPEDVAYAVAFLASNNASYITGQTLHVNGG 245
>2nm0_A Probable 3-oxacyl-(acyl-carrier-protein) reductas; oxidoreductase;
1.99A {Streptomyces coelicolor}
Length = 253
Score = 153 bits (390), Expect = 1e-45
Identities = 76/295 (25%), Positives = 114/295 (38%), Gaps = 69/295 (23%)
Query: 1 MNFTGKVILVTGASSGIGAATALHLAKLDAKLAITGRNVEQLNKVSESCQSVSKNKPLVI 60
+ + +LVTG + GIG A A A K+AIT R+ E L +
Sbjct: 17 RSHMSRSVLVTGGNRGIGLAIARAFADAGDKVAITYRSGEPPEGF------------LAV 64
Query: 61 QADLTSEEDTKRIIDTVVKHYQKLNVLVNNAVTGASSGIGAATALHLAKLDAKLAITGRN 120
+ D+T E ++ + + + + VL+ NA +T
Sbjct: 65 KCDITDTEQVEQAYKEIEETHGPVEVLIANA-----------------------GVTKDQ 101
Query: 121 V------EQLNKVSESCQSVSKNKPLVIQADLTSEEDTKRIIDTVVKHYQKLNVLVNNAG 174
+ E V ++ +LT T R++ + + G
Sbjct: 102 LLMRMSEEDFTSV--------------VETNLTG---TFRVVKRANRAMLR-----AKKG 139
Query: 175 NIVNVSSVNGLRSFPGVLAYCVSKAAVDQFTSCTALELASKGVRVNSVNPGVTLTNLHKN 234
+V +SSV GL G Y SKA + F A EL S+ + N V PG T++ K
Sbjct: 140 RVVLISSVVGLLGSAGQANYAASKAGLVGFARSLARELGSRNITFNVVAPGFVDTDMTKV 199
Query: 235 SGIDQQAYQNFLERSKETHALGRVGNPEEVAKAIAFLASDDASFTTGEHLTVDGG 289
+Q+ LGR PEE+A + FLASDDAS+ TG + VDGG
Sbjct: 200 LTDEQR------ANIVSQVPLGRYARPEEIAATVRFLASDDASYITGAVIPVDGG 248
>2pd6_A Estradiol 17-beta-dehydrogenase 8; short-chain
dehydrogenase/reductase, steroid metabolism, LIP
metabolism, structural genomics; HET: NAD; 2.00A {Homo
sapiens}
Length = 264
Score = 153 bits (389), Expect = 2e-45
Identities = 64/249 (25%), Positives = 97/249 (38%), Gaps = 57/249 (22%)
Query: 92 VTGASSGIGAATALHLAKLDAKLAITGRNVEQLNKVSESCQS------VSKNKPLVIQAD 145
VTGA SGIG A ++ LA A +A + + + QAD
Sbjct: 12 VTGAGSGIGRAVSVRLAGEGATVAACDLDRAAAQETVRLLGGPGSKEGPPRGNHAAFQAD 71
Query: 146 LTSEEDTKRIIDTVVKHYQK-LNVLVNNAG---------------------N-------- 175
++ + +++ V + + +V+V+ AG N
Sbjct: 72 VSEARAARCLLEQVQACFSRPPSVVVSCAGITQDEFLLHMSEDDWDKVIAVNLKGTFLVT 131
Query: 176 ---------------IVNVSSVNGLRSFPGVLAYCVSKAAVDQFTSCTALELASKGVRVN 220
I+N+SS+ G G Y SKA V T A EL G+R N
Sbjct: 132 QAAAQALVSNGCRGSIINISSIVGKVGNVGQTNYAASKAGVIGLTQTAARELGRHGIRCN 191
Query: 221 SVNPGVTLTNLHKNSGIDQQAYQNFLERSKETHALGRVGNPEEVAKAIAFLASDDASFTT 280
SV PG T + + Q+ E +G +G+PE+VA +AFLAS+D+ + T
Sbjct: 192 SVLPGFIATPM--TQKVPQKVVDKITEMI----PMGHLGDPEDVADVVAFLASEDSGYIT 245
Query: 281 GEHLTVDGG 289
G + V GG
Sbjct: 246 GTSVEVTGG 254
Score = 83.4 bits (207), Expect = 5e-19
Identities = 21/96 (21%), Positives = 39/96 (40%), Gaps = 7/96 (7%)
Query: 3 FTGKVILVTGASSGIGAATALHLAKLDAKLAITGRNVEQLNKVSESCQS------VSKNK 56
+ LVTGA SGIG A ++ LA A +A + + +
Sbjct: 5 LRSALALVTGAGSGIGRAVSVRLAGEGATVAACDLDRAAAQETVRLLGGPGSKEGPPRGN 64
Query: 57 PLVIQADLTSEEDTKRIIDTVVKHYQK-LNVLVNNA 91
QAD++ + +++ V + + +V+V+ A
Sbjct: 65 HAAFQADVSEARAARCLLEQVQACFSRPPSVVVSCA 100
>2ph3_A 3-oxoacyl-[acyl carrier protein] reductase; TTHA0415, structural
genomics, southea collaboratory for structural genomics,
secsg; 1.91A {Thermus thermophilus HB8}
Length = 245
Score = 153 bits (388), Expect = 2e-45
Identities = 78/242 (32%), Positives = 108/242 (44%), Gaps = 50/242 (20%)
Query: 92 VTGASSGIGAATALHLAKLDAKLAI-TGRNVEQLNKVSESCQSVSKNKPLVIQADLTSEE 150
+TGAS GIG A AL LA+ LAI G+N E+ +V+E + V+ A+L E
Sbjct: 6 ITGASRGIGRAIALRLAEDGFALAIHYGQNREKAEEVAEEARRRGSPLVAVLGANLLEAE 65
Query: 151 DTKRIIDTVVKHYQKLNVLVNNAG---------------------N-------------- 175
++ + L+ LVNNAG N
Sbjct: 66 AATALVHQAAEVLGGLDTLVNNAGITRDTLLVRMKDEDWEAVLEANLSAVFRTTREAVKL 125
Query: 176 --------IVNVSSVNGLRSFPGVLAYCVSKAAVDQFTSCTALELASKGVRVNSVNPGVT 227
IVN++SV G+ PG Y SKA + FT A E A +G+ VN+V PG
Sbjct: 126 MMKARFGRIVNITSVVGILGNPGQANYVASKAGLIGFTRAVAKEYAQRGITVNAVAPGFI 185
Query: 228 LTNLHKNSGIDQQAYQNFLERSKETHALGRVGNPEEVAKAIAFLASDDASFTTGEHLTVD 287
T + + + + E + GR G PEEVA+A+AFL S+ A + TG+ L VD
Sbjct: 186 ETEMTERLPQEVK------EAYLKQIPAGRFGRPEEVAEAVAFLVSEKAGYITGQTLCVD 239
Query: 288 GG 289
GG
Sbjct: 240 GG 241
Score = 82.1 bits (204), Expect = 1e-18
Identities = 31/87 (35%), Positives = 45/87 (51%), Gaps = 1/87 (1%)
Query: 6 KVILVTGASSGIGAATALHLAKLDAKLAI-TGRNVEQLNKVSESCQSVSKNKPLVIQADL 64
+ L+TGAS GIG A AL LA+ LAI G+N E+ +V+E + V+ A+L
Sbjct: 2 RKALITGASRGIGRAIALRLAEDGFALAIHYGQNREKAEEVAEEARRRGSPLVAVLGANL 61
Query: 65 TSEEDTKRIIDTVVKHYQKLNVLVNNA 91
E ++ + L+ LVNNA
Sbjct: 62 LEAEAATALVHQAAEVLGGLDTLVNNA 88
>3ftp_A 3-oxoacyl-[acyl-carrier protein] reductase; ssgcid,
3-ketoacyl-(acyl-carrier- protein) reductase,
oxidoreductase, structural genomics; 2.05A {Burkholderia
pseudomallei}
Length = 270
Score = 153 bits (389), Expect = 2e-45
Identities = 73/241 (30%), Positives = 105/241 (43%), Gaps = 50/241 (20%)
Query: 92 VTGASSGIGAATALHLAKLDAKLAITGRNVEQLNKVSESCQSVSKNKPLVIQADLTSEED 151
VTGAS GIG A AL LA+ A + T + + + + + ++
Sbjct: 33 VTGASRGIGRAIALELARRGAMVIGTATTEAGAEGIGAAFKQ-AGLEGRGAVLNVNDATA 91
Query: 152 TKRIIDTVVKHYQKLNVLVNNAG---------------------N--------------- 175
++++ +K + LNVLVNNAG N
Sbjct: 92 VDALVESTLKEFGALNVLVNNAGITQDQLAMRMKDDEWDAVIDTNLKAVFRLSRAVLRPM 151
Query: 176 -------IVNVSSVNGLRSFPGVLAYCVSKAAVDQFTSCTALELASKGVRVNSVNPGVTL 228
IVN++SV G PG + Y +KA V T A E+ S+G+ VN V PG
Sbjct: 152 MKARGGRIVNITSVVGSAGNPGQVNYAAAKAGVAGMTRALAREIGSRGITVNCVAPGFID 211
Query: 229 TNLHKNSGIDQQAYQNFLERSKETHALGRVGNPEEVAKAIAFLASDDASFTTGEHLTVDG 288
T++ K +QQ K LGR+G+PE++A A+AFLAS A + TG L V+G
Sbjct: 212 TDMTKGLPQEQQ------TALKTQIPLGRLGSPEDIAHAVAFLASPQAGYITGTTLHVNG 265
Query: 289 G 289
G
Sbjct: 266 G 266
Score = 87.2 bits (217), Expect = 2e-20
Identities = 25/91 (27%), Positives = 42/91 (46%), Gaps = 1/91 (1%)
Query: 1 MNFTGKVILVTGASSGIGAATALHLAKLDAKLAITGRNVEQLNKVSESCQSVSKNKPLVI 60
+V +VTGAS GIG A AL LA+ A + T + + + + +
Sbjct: 24 KTLDKQVAIVTGASRGIGRAIALELARRGAMVIGTATTEAGAEGIGAAFKQ-AGLEGRGA 82
Query: 61 QADLTSEEDTKRIIDTVVKHYQKLNVLVNNA 91
++ ++++ +K + LNVLVNNA
Sbjct: 83 VLNVNDATAVDALVESTLKEFGALNVLVNNA 113
>3op4_A 3-oxoacyl-[acyl-carrier protein] reductase;
3-ketoacyl-(acyl-carrier-protein) reductase; HET: MSE
NAP; 1.60A {Vibrio cholerae o1 biovar el tor} PDB:
3rsh_A* 3rro_A* 3tzk_A 3tzc_A* 3u09_A 3tzh_A 1q7b_A*
1i01_A* 1q7c_A* 2cf2_E
Length = 248
Score = 152 bits (387), Expect = 3e-45
Identities = 72/241 (29%), Positives = 108/241 (44%), Gaps = 53/241 (21%)
Query: 92 VTGASSGIGAATALHLAKLDAKLAITGRNVEQLNKVSESCQSVSKNKPLVIQADLTSEED 151
VTGAS GIG A A LA+ AK+ T + +S+ + + ++T+ E
Sbjct: 14 VTGASRGIGKAIAELLAERGAKVIGTATSESGAQAISDYL----GDNGKGMALNVTNPES 69
Query: 152 TKRIIDTVVKHYQKLNVLVNNAG---------------------N--------------- 175
+ ++ + + +++LVNNAG N
Sbjct: 70 IEAVLKAITDEFGGVDILVNNAGITRDNLLMRMKEEEWSDIMETNLTSIFRLSKAVLRGM 129
Query: 176 -------IVNVSSVNGLRSFPGVLAYCVSKAAVDQFTSCTALELASKGVRVNSVNPGVTL 228
I+NV SV G G Y +KA V FT A E+AS+GV VN+V PG
Sbjct: 130 MKKRQGRIINVGSVVGTMGNAGQANYAAAKAGVIGFTKSMAREVASRGVTVNTVAPGFIE 189
Query: 229 TNLHKNSGIDQQAYQNFLERSKETHALGRVGNPEEVAKAIAFLASDDASFTTGEHLTVDG 288
T++ K +Q+ + GR+G+P E+A A+AFLAS +A++ TGE L V+G
Sbjct: 190 TDMTKALNDEQR------TATLAQVPAGRLGDPREIASAVAFLASPEAAYITGETLHVNG 243
Query: 289 G 289
G
Sbjct: 244 G 244
Score = 90.2 bits (225), Expect = 1e-21
Identities = 29/91 (31%), Positives = 47/91 (51%), Gaps = 4/91 (4%)
Query: 1 MNFTGKVILVTGASSGIGAATALHLAKLDAKLAITGRNVEQLNKVSESCQSVSKNKPLVI 60
MN GKV LVTGAS GIG A A LA+ AK+ T + +S+ + +
Sbjct: 5 MNLEGKVALVTGASRGIGKAIAELLAERGAKVIGTATSESGAQAISDYL----GDNGKGM 60
Query: 61 QADLTSEEDTKRIIDTVVKHYQKLNVLVNNA 91
++T+ E + ++ + + +++LVNNA
Sbjct: 61 ALNVTNPESIEAVLKAITDEFGGVDILVNNA 91
>1dhr_A Dihydropteridine reductase; oxidoreductase(acting on NADH or
NADPH); HET: NAD; 2.30A {Rattus norvegicus} SCOP:
c.2.1.2 PDB: 1dir_A* 1hdr_A*
Length = 241
Score = 152 bits (386), Expect = 3e-45
Identities = 37/297 (12%), Positives = 81/297 (27%), Gaps = 67/297 (22%)
Query: 3 FTGKVILVTGASSGIGAATALHLAKLDAKLAITGRNVEQLNKVSESCQSVSKNKPLVIQA 62
+ +LV G +G+ + +A + S + + +
Sbjct: 5 GEARRVLVYGGRGALGSRCVQAFRARNWWVASIDVVENEE---------ASASVIVKMTD 55
Query: 63 DLTSEEDTKRIIDTVVKHYQKLNVLVNNAVTGASSGIGAATALHLAKLDAKLAITGRNVE 122
T + D + QK++ ++ A G +G A + D ++
Sbjct: 56 SFTEQADQVTAEVGKLLGDQKVDAILCVA--GGWAGGNAKSKSLFKNCDLMWKQ---SIW 110
Query: 123 QLNKVSESCQSVSKNKPLVIQADLTSEEDTKRIIDTVVKHYQKLNVLVNNAGNIVNVSSV 182
+ + + KH ++ G + +
Sbjct: 111 ----------TST----ISSHL--------------ATKHLKE-------GGLLTLAGAK 135
Query: 183 NGLRSFPGVLAYCVSKAAVDQFTSCTALELAS--KGVRVNSVNPGVTLTNLHKNSGIDQQ 240
L PG++ Y ++K AV Q A + + G +V P T +
Sbjct: 136 AALDGTPGMIGYGMAKGAVHQLCQSLAGKNSGMPSGAAAIAVLPVTLDTPM--------- 186
Query: 241 AYQNFLERSKETHALGRVGNPEEVAKAIAFLASDDASFTTGEHLTV--DGGRHAMCP 295
+S E + + + + +G + V G+ + P
Sbjct: 187 -----NRKSMPEADFSSWTPLEFLVETFHDWITGNKRPNSGSLIQVVTTDGKTELTP 238
>2c07_A 3-oxoacyl-(acyl-carrier protein) reductase; oxidoreductase, FABG,
short-chain alcohol reductase, fatty acid biosynthesis,
apicoplast; 1.5A {Plasmodium falciparum} SCOP: c.2.1.2
Length = 285
Score = 153 bits (389), Expect = 3e-45
Identities = 64/247 (25%), Positives = 102/247 (41%), Gaps = 53/247 (21%)
Query: 92 VTGASSGIGAATALHLAKLDAKLAITGRNVEQLNKVSESCQSVSKNKPLVIQADLTSEED 151
VTGA GIG A LAK + + R + + V + +S + D++ +E+
Sbjct: 49 VTGAGRGIGREIAKMLAKSVSHVICISRTQKSCDSVVDEIKS-FGYESSGYAGDVSKKEE 107
Query: 152 TKRIIDTVVKHYQKLNVLVNNAG---------------------N--------------- 175
+I+ ++ ++ +++LVNNAG N
Sbjct: 108 ISEVINKILTEHKNVDILVNNAGITRDNLFLRMKNDEWEDVLRTNLNSLFYITQPISKRM 167
Query: 176 -------IVNVSSVNGLRSFPGVLAYCVSKAAVDQFTSCTALELASKGVRVNSVNPGVTL 228
I+N+SS+ GL G Y SKA V FT A ELAS+ + VN++ PG
Sbjct: 168 INNRYGRIINISSIVGLTGNVGQANYSSSKAGVIGFTKSLAKELASRNITVNAIAPGFIS 227
Query: 229 TNLHKNSGIDQQAYQNFLERSKETHALGRVGNPEEVAKAIAFLASDDASFTTGEHLTVDG 288
+++ + + GR+G PEEVA FL+SD + + G +DG
Sbjct: 228 SDMTDKISEQIK------KNIISNIPAGRMGTPEEVANLACFLSSDKSGYINGRVFVIDG 281
Query: 289 GRHAMCP 295
G + P
Sbjct: 282 G---LSP 285
Score = 89.6 bits (223), Expect = 5e-21
Identities = 25/91 (27%), Positives = 45/91 (49%), Gaps = 1/91 (1%)
Query: 1 MNFTGKVILVTGASSGIGAATALHLAKLDAKLAITGRNVEQLNKVSESCQSVSKNKPLVI 60
KV LVTGA GIG A LAK + + R + + V + +S +
Sbjct: 40 YCGENKVALVTGAGRGIGREIAKMLAKSVSHVICISRTQKSCDSVVDEIKS-FGYESSGY 98
Query: 61 QADLTSEEDTKRIIDTVVKHYQKLNVLVNNA 91
D++ +E+ +I+ ++ ++ +++LVNNA
Sbjct: 99 AGDVSKKEEISEVINKILTEHKNVDILVNNA 129
>3ppi_A 3-hydroxyacyl-COA dehydrogenase type-2; ssgcid, dehydrogenas
mycobacterium avium, structural genomics; 2.00A
{Mycobacterium avium}
Length = 281
Score = 153 bits (389), Expect = 3e-45
Identities = 58/299 (19%), Positives = 110/299 (36%), Gaps = 46/299 (15%)
Query: 1 MNFTGKVILVTGASSGIGAATALHLAKLDAKLAITGRNVEQLNKVSESCQSVSKNKPLVI 60
F G +V+G + G+G AT L + I E+ +++ + + +
Sbjct: 26 KQFEGASAIVSGGAGGLGEATVRRLHADGLGVVIADLAAEKGKALADELGN----RAEFV 81
Query: 61 QADLTSEEDTKRIIDTVVKHYQKLNVLVNNA-VTGASSGIGAATALH-LAKLDAKLAITG 118
++TSE+ I+ + + +V + A + + + + +
Sbjct: 82 STNVTSEDSVLAAIEAANQLGRLRYAVVAHGGFGVAQRIVQRDGSPADMGGFTKTIDLYL 141
Query: 119 RNVEQLNKVSESCQSVSKNKPLVIQADLTSEEDTKRIIDTVVKHYQKLNVLVNNAGNIVN 178
N S++ +P E+ +R G +V
Sbjct: 142 NGT--YNVARLVAASIAAAEP---------RENGER-------------------GALVL 171
Query: 179 VSSVNGLRSFPGVLAYCVSKAAVDQFTSCTALELASKGVRVNSVNPGVTLTNLHKNSGID 238
+S+ G G AY +KA V T A +L+S G+RVN++ PG T +
Sbjct: 172 TASIAGYEGQIGQTAYAAAKAGVIGLTIAAARDLSSAGIRVNTIAPGTMKTPIM------ 225
Query: 239 QQAYQNFLERSKETHAL-GRVGNPEEVAKAIAFLASDDASFTTGEHLTVDGGRHAMCPR 296
+ + L + R+G P+E A A AFL ++ + GE + +DG + P+
Sbjct: 226 ESVGEEALAKFAANIPFPKRLGTPDEFADAAAFLLTN--GYINGEVMRLDGAQR-FTPK 281
>2ehd_A Oxidoreductase, oxidoreductase, short-chain dehydrogenase/reducta;
rossman fold, structural genomics, NPPSFA; 2.40A
{Thermus thermophilus}
Length = 234
Score = 151 bits (385), Expect = 4e-45
Identities = 63/280 (22%), Positives = 101/280 (36%), Gaps = 75/280 (26%)
Query: 1 MNFTGKVILVTGASSGIGAATALHLAKLDAKLAITGRNVEQLNKVSESCQSVSKNKPLVI 60
M +L+TGAS GIG ATA L ++ + R+ ++L ++ + L +
Sbjct: 1 MEGMKGAVLITGASRGIGEATARLLHAKGYRVGLMARDEKRLQALAAELEGA-----LPL 55
Query: 61 QADLTSEEDTKRIIDTVVKHYQKLNVLVNNAVTGASSGIGAATALHLAKLDAKLAITGRN 120
D+ E D R + + + + +L+ LVNNA G+G +H L+
Sbjct: 56 PGDVREEGDWARAVAAMEEAFGELSALVNNA------GVGVMKPVHELTLE--------- 100
Query: 121 VEQLNKVSESCQSVSKNKPLVIQADLTSEEDTKRIIDTVVK------HYQKLNVLV-NNA 173
+ + ++DT + + + L+
Sbjct: 101 ------------------------------EWRLVLDTNLTGAFLGIRHA-VPALLRRGG 129
Query: 174 GNIVNVSSVNGLRSFPGVLAYCVSKAAVDQFTSCTALELASKGVRVNSVNPGVTLTNLHK 233
G IVNV S+ G F G AY SK + L+L VRV +V PG T
Sbjct: 130 GTIVNVGSLAGKNPFKGGAAYNASKFGLLGLAGAAMLDLREANVRVVNVLPGSVDTGFAG 189
Query: 234 NSGIDQQAYQNFLERSKETHALGRVGNPEEVAKAIAFLAS 273
N + L PE+VA+A+ F
Sbjct: 190 N-------------TPGQAWKL----KPEDVAQAVLFALE 212
>2hq1_A Glucose/ribitol dehydrogenase; CTH-1438, structural genomics,
southeast collaboratory for structural genomics, secsg,
PSI; 1.90A {Clostridium thermocellum}
Length = 247
Score = 152 bits (386), Expect = 4e-45
Identities = 66/242 (27%), Positives = 109/242 (45%), Gaps = 51/242 (21%)
Query: 92 VTGASSGIGAATALHLAKLDAKLAITG-RNVEQLNKVSESCQSVSKNKPLVIQADLTSEE 150
VTG+S G+G A A L + A + + G L+ +E ++ + +V + D+ + E
Sbjct: 10 VTGSSRGLGKAIAWKLGNMGANIVLNGSPASTSLDATAEEFKA-AGINVVVAKGDVKNPE 68
Query: 151 DTKRIIDTVVKHYQKLNVLVNNAG---------------------N-------------- 175
D + ++ T + + ++++LVNNAG N
Sbjct: 69 DVENMVKTAMDAFGRIDILVNNAGITRDTLMLKMSEKDWDDVLNTNLKSAYLCTKAVSKI 128
Query: 176 --------IVNVSSVNGLRSFPGVLAYCVSKAAVDQFTSCTALELASKGVRVNSVNPGVT 227
I+N++S+ G+ G Y SKA + FT A E A+KG+ N+V PG+
Sbjct: 129 MLKQKSGKIINITSIAGIIGNAGQANYAASKAGLIGFTKSIAKEFAAKGIYCNAVAPGII 188
Query: 228 LTNLHKNSGIDQQAYQNFLERSKETHALGRVGNPEEVAKAIAFLASDDASFTTGEHLTVD 287
T++ + E L R G PEEVA + FLASDD+++ TG+ + +D
Sbjct: 189 KTDMTDVLPDKVK------EMYLNNIPLKRFGTPEEVANVVGFLASDDSNYITGQVINID 242
Query: 288 GG 289
GG
Sbjct: 243 GG 244
Score = 88.7 bits (221), Expect = 5e-21
Identities = 26/92 (28%), Positives = 50/92 (54%), Gaps = 2/92 (2%)
Query: 1 MNFTGKVILVTGASSGIGAATALHLAKLDAKLAITG-RNVEQLNKVSESCQSVSKNKPLV 59
M GK +VTG+S G+G A A L + A + + G L+ +E ++ + +V
Sbjct: 1 MQLKGKTAIVTGSSRGLGKAIAWKLGNMGANIVLNGSPASTSLDATAEEFKA-AGINVVV 59
Query: 60 IQADLTSEEDTKRIIDTVVKHYQKLNVLVNNA 91
+ D+ + ED + ++ T + + ++++LVNNA
Sbjct: 60 AKGDVKNPEDVENMVKTAMDAFGRIDILVNNA 91
>3ezl_A Acetoacetyl-COA reductase; ssgcid, acetyacetyl-COA reductase,
oxidoreductase, structural genomics; HET: P4C; 2.25A
{Burkholderia pseudomallei 1710B}
Length = 256
Score = 152 bits (386), Expect = 5e-45
Identities = 66/242 (27%), Positives = 107/242 (44%), Gaps = 51/242 (21%)
Query: 92 VTGASSGIGAATALHLAKLDAKLAIT-GRNVEQLNKVSESCQSVSKNKPLVIQADLTSEE 150
VTG GIG + L K ++ G N + K E +++ + ++ +
Sbjct: 18 VTGGMGGIGTSICQRLHKDGFRVVAGCGPNSPRRVKWLEDQKALGF-DFYASEGNVGDWD 76
Query: 151 DTKRIIDTVVKHYQKLNVLVNNAG---------------------N-------------- 175
TK+ D V +++VLVNNAG N
Sbjct: 77 STKQAFDKVKAEVGEIDVLVNNAGITRDVVFRKMTREDWQAVIDTNLTSLFNVTKQVIDG 136
Query: 176 --------IVNVSSVNGLRSFPGVLAYCVSKAAVDQFTSCTALELASKGVRVNSVNPGVT 227
I+N+SSVNG + G Y +KA + FT A E+A+KGV VN+V+PG
Sbjct: 137 MVERGWGRIINISSVNGQKGQFGQTNYSTAKAGIHGFTMSLAQEVATKGVTVNTVSPGYI 196
Query: 228 LTNLHKNSGIDQQAYQNFLERSKETHALGRVGNPEEVAKAIAFLASDDASFTTGEHLTVD 287
T++ K D E+ T + R+G+P+E+ +A+LAS+++ F+TG +++
Sbjct: 197 GTDMVKAIRPDVL------EKIVATIPVRRLGSPDEIGSIVAWLASEESGFSTGADFSLN 250
Query: 288 GG 289
GG
Sbjct: 251 GG 252
Score = 81.8 bits (203), Expect = 2e-18
Identities = 23/92 (25%), Positives = 41/92 (44%), Gaps = 2/92 (2%)
Query: 1 MNFTGKVILVTGASSGIGAATALHLAKLDAKLAIT-GRNVEQLNKVSESCQSVSKNKPLV 59
M + ++ VTG GIG + L K ++ G N + K E +++
Sbjct: 9 MVMSQRIAYVTGGMGGIGTSICQRLHKDGFRVVAGCGPNSPRRVKWLEDQKALGF-DFYA 67
Query: 60 IQADLTSEEDTKRIIDTVVKHYQKLNVLVNNA 91
+ ++ + TK+ D V +++VLVNNA
Sbjct: 68 SEGNVGDWDSTKQAFDKVKAEVGEIDVLVNNA 99
>3oec_A Carveol dehydrogenase (mytha.01326.C, A0R518 HOMO; ssgcid,
structural genomics; 1.95A {Mycobacterium
thermoresistibile}
Length = 317
Score = 153 bits (389), Expect = 7e-45
Identities = 67/315 (21%), Positives = 114/315 (36%), Gaps = 74/315 (23%)
Query: 3 FTGKVILVTGASSGIGAATALHLAKLDAKLAIT------------GRNVEQLNKVSESCQ 50
GKV +TGA+ G G A+ LA+ A + + E+L + +
Sbjct: 44 LQGKVAFITGAARGQGRTHAVRLAQDGADIVAIDLCRQQPNLDYAQGSPEELKETVRLVE 103
Query: 51 SVSKNKPLVIQADLTSEEDTKRIIDTVVKHYQKLNVLVNNAVTGASSGIGAATALHLAKL 110
+ + + QAD+ + ++D + + +++LV+N GI +
Sbjct: 104 EQGR-RIIARQADVRDLASLQAVVDEALAEFGHIDILVSNV------GISNQGEVVS--- 153
Query: 111 DAKLAITGRNVEQLNKVSESCQSVSKNKPLVIQADLTSEEDTKRIIDT-------VVKHY 163
+++ I+ T +
Sbjct: 154 ------------------------------------LTDQQWSDILQTNLIGAWHACRAV 177
Query: 164 QKLNVLVNNAGNIVNVSSVNGLRSFPGVLAYCVSKAAVDQFTSCTALELASKGVRVNSVN 223
+ G+++ VSS GLR PG Y SK V A E+ +RVNSVN
Sbjct: 178 LPSMIERGQGGSVIFVSSTVGLRGAPGQSHYAASKHGVQGLMLSLANEVGRHNIRVNSVN 237
Query: 224 PGVTLTNLHKNSGI--------DQQAYQNFLERSKETHALG-RVGNPEEVAKAIAFLASD 274
PG T + N + + ++ E + L PE+V+ A+A+LASD
Sbjct: 238 PGAVNTEMALNEKLLKMFLPHLENPTREDAAELFSQLTLLPIPWVEPEDVSNAVAWLASD 297
Query: 275 DASFTTGEHLTVDGG 289
+A + G + VDGG
Sbjct: 298 EARYIHGAAIPVDGG 312
>2pnf_A 3-oxoacyl-[acyl-carrier-protein] reductase; short chain
oxidoreductase, rossmann fold, oxidoreductase; HET: 1PE
MES; 1.80A {Aquifex aeolicus} PDB: 2p68_A*
Length = 248
Score = 151 bits (384), Expect = 7e-45
Identities = 74/241 (30%), Positives = 111/241 (46%), Gaps = 49/241 (20%)
Query: 92 VTGASSGIGAATALHLAKLDAKLAITGRNVEQLNKVSESCQSVSKNKPLVIQADLTSEED 151
VTG++ GIG A A LA + + ITG + E+ V+E + K ++ +L SEE
Sbjct: 12 VTGSTRGIGRAIAEKLASAGSTVIITGTSGERAKAVAEEIANKYGVKAHGVEMNLLSEES 71
Query: 152 TKRIIDTVVKHYQKLNVLVNNAG---------------------N--------------- 175
+ + + +++LVNNAG N
Sbjct: 72 INKAFEEIYNLVDGIDILVNNAGITRDKLFLRMSLLDWEEVLKVNLTGTFLVTQNSLRKM 131
Query: 176 -------IVNVSSVNGLRSFPGVLAYCVSKAAVDQFTSCTALELASKGVRVNSVNPGVTL 228
IVN+SSV G G + Y +KA + FT A ELA + V VN+V PG
Sbjct: 132 IKQRWGRIVNISSVVGFTGNVGQVNYSTTKAGLIGFTKSLAKELAPRNVLVNAVAPGFIE 191
Query: 229 TNLHKNSGIDQQAYQNFLERSKETHALGRVGNPEEVAKAIAFLASDDASFTTGEHLTVDG 288
T++ + + ++ Q + E+ LGR G+PEEVA + FL S+ AS+ TGE + V+G
Sbjct: 192 TDM--TAVLSEEIKQKYKEQI----PLGRFGSPEEVANVVLFLCSELASYITGEVIHVNG 245
Query: 289 G 289
G
Sbjct: 246 G 246
Score = 91.4 bits (228), Expect = 5e-22
Identities = 30/91 (32%), Positives = 48/91 (52%)
Query: 1 MNFTGKVILVTGASSGIGAATALHLAKLDAKLAITGRNVEQLNKVSESCQSVSKNKPLVI 60
+ GKV LVTG++ GIG A A LA + + ITG + E+ V+E + K +
Sbjct: 3 IKLQGKVSLVTGSTRGIGRAIAEKLASAGSTVIITGTSGERAKAVAEEIANKYGVKAHGV 62
Query: 61 QADLTSEEDTKRIIDTVVKHYQKLNVLVNNA 91
+ +L SEE + + + +++LVNNA
Sbjct: 63 EMNLLSEESINKAFEEIYNLVDGIDILVNNA 93
>3s55_A Putative short-chain dehydrogenase/reductase; structural genomics,
seattle structural genomics center for infectious
disease, ssgcid; HET: NAD; 2.10A {Mycobacterium
abscessus}
Length = 281
Score = 151 bits (385), Expect = 1e-44
Identities = 68/309 (22%), Positives = 109/309 (35%), Gaps = 61/309 (19%)
Query: 2 NFTGKVILVTGASSGIGAATALHLAKLDAKLAITGR------------NVEQLNKVSESC 49
+F GK L+TG + G+G + A+ LA+ A +AI R + L +
Sbjct: 7 DFEGKTALITGGARGMGRSHAVALAEAGADIAICDRCENSDVVGYPLATADDLAETVALV 66
Query: 50 QSVSKNKPLVIQADLTSEEDTKRIIDTVVKHYQKLNVLVNNAVTGASSGIGAATALHLAK 109
+ + + + + D+ + + +++ + NA GI L +
Sbjct: 67 EKTGR-RCISAKVDVKDRAALESFVAEAEDTLGGIDIAITNA------GISTIALLPEVE 119
Query: 110 LDAKLAITGRNVEQLNKVSESCQSVSKNKPLVIQADLTSEEDTKRIIDTVVKHYQKLNVL 169
VI +LT T I V K
Sbjct: 120 SAQWDE-------------------------VIGTNLTG---TFNTIAAVAPGMIK---- 147
Query: 170 VNNAGNIVNVSSVNGLRSFPGVLAYCVSKAAVDQFTSCTALELASKGVRVNSVNPGVTLT 229
N G IV VSS+ G + +Y SK V T C A +L G+ VN+V PG T
Sbjct: 148 -RNYGRIVTVSSMLGHSANFAQASYVSSKWGVIGLTKCAAHDLVGYGITVNAVAPGNIET 206
Query: 230 NLHKNSG--------IDQQAYQNFLERSKETHA-LGRVGNPEEVAKAIAFLASDDASFTT 280
+ N +++ ++ H PEEV +A+ FL + +S T
Sbjct: 207 PMTHNDFVFGTMRPDLEKPTLKDVESVFASLHLQYAPFLKPEEVTRAVLFLVDEASSHIT 266
Query: 281 GEHLTVDGG 289
G L +D G
Sbjct: 267 GTVLPIDAG 275
>2uvd_A 3-oxoacyl-(acyl-carrier-protein) reductase; beta-ketoacyl- (acyl
carrier protein) reductase, short-chain
dehydrogenase/reductase (SDR); 2.4A {Bacillus anthracis}
Length = 246
Score = 150 bits (381), Expect = 2e-44
Identities = 66/242 (27%), Positives = 109/242 (45%), Gaps = 51/242 (21%)
Query: 92 VTGASSGIGAATALHLAKLDAKLAI-TGRNVEQLNKVSESCQSVSKNKPLVIQADLTSEE 150
VTGAS GIG A A+ LAK A + + N ++ N+V + + + + ++AD+ + E
Sbjct: 9 VTGASRGIGRAIAIDLAKQGANVVVNYAGNEQKANEVVDEIKK-LGSDAIAVRADVANAE 67
Query: 151 DTKRIIDTVVKHYQKLNVLVNNAG---------------------N-------------- 175
D ++ V + ++++LVNNAG N
Sbjct: 68 DVTNMVKQTVDVFGQVDILVNNAGVTKDNLLMRMKEEEWDTVINTNLKGVFLCTKAVSRF 127
Query: 176 --------IVNVSSVNGLRSFPGVLAYCVSKAAVDQFTSCTALELASKGVRVNSVNPGVT 227
IVN++SV G+ PG Y +KA V T +A ELAS+ + VN++ PG
Sbjct: 128 MMRQRHGRIVNIASVVGVTGNPGQANYVAAKAGVIGLTKTSAKELASRNITVNAIAPGFI 187
Query: 228 LTNLHKNSGIDQQAYQNFLERSKETHALGRVGNPEEVAKAIAFLASDDASFTTGEHLTVD 287
T++ + + + + G +++A A+ F ASD + + TG+ L VD
Sbjct: 188 ATDMTDVLDENIK------AEMLKLIPAAQFGEAQDIANAVTFFASDQSKYITGQTLNVD 241
Query: 288 GG 289
GG
Sbjct: 242 GG 243
Score = 82.9 bits (206), Expect = 5e-19
Identities = 31/90 (34%), Positives = 52/90 (57%), Gaps = 2/90 (2%)
Query: 3 FTGKVILVTGASSGIGAATALHLAKLDAKLAI-TGRNVEQLNKVSESCQSVSKNKPLVIQ 61
GKV LVTGAS GIG A A+ LAK A + + N ++ N+V + + + + ++
Sbjct: 2 LKGKVALVTGASRGIGRAIAIDLAKQGANVVVNYAGNEQKANEVVDEIKK-LGSDAIAVR 60
Query: 62 ADLTSEEDTKRIIDTVVKHYQKLNVLVNNA 91
AD+ + ED ++ V + ++++LVNNA
Sbjct: 61 ADVANAEDVTNMVKQTVDVFGQVDILVNNA 90
>3lyl_A 3-oxoacyl-(acyl-carrier-protein) reductase; alpha and beta protein,
NAD(P)-binding rossmann fold, csgid, oxidoreductase;
1.95A {Francisella tularensis subsp}
Length = 247
Score = 150 bits (381), Expect = 2e-44
Identities = 63/241 (26%), Positives = 99/241 (41%), Gaps = 50/241 (20%)
Query: 92 VTGASSGIGAATALHLAKLDAKLAITGRNVEQLNKVSESCQSVSKNKPLVIQADLTSEED 151
VTGAS GIG A LA A + T + K S + K + +++ E
Sbjct: 10 VTGASRGIGFEVAHALASKGATVVGTATSQASAEKFENSMKE-KGFKARGLVLNISDIES 68
Query: 152 TKRIIDTVVKHYQKLNVLVNNAG---------------------N--------------- 175
+ + +++LVNNAG N
Sbjct: 69 IQNFFAEIKAENLAIDILVNNAGITRDNLMMRMSEDEWQSVINTNLSSIFRMSKECVRGM 128
Query: 176 -------IVNVSSVNGLRSFPGVLAYCVSKAAVDQFTSCTALELASKGVRVNSVNPGVTL 228
I+++ SV G PG YC +KA V F+ A E+AS+ + VN V PG
Sbjct: 129 MKKRWGRIISIGSVVGSAGNPGQTNYCAAKAGVIGFSKSLAYEVASRNITVNVVAPGFIA 188
Query: 229 TNLHKNSGIDQQAYQNFLERSKETHALGRVGNPEEVAKAIAFLASDDASFTTGEHLTVDG 288
T++ + + + G++G P+++A A+AFLAS++A + TG+ L V+G
Sbjct: 189 TDM--TDKLTDEQKSFIATKI----PSGQIGEPKDIAAAVAFLASEEAKYITGQTLHVNG 242
Query: 289 G 289
G
Sbjct: 243 G 243
Score = 91.8 bits (229), Expect = 3e-22
Identities = 26/91 (28%), Positives = 39/91 (42%), Gaps = 1/91 (1%)
Query: 1 MNFTGKVILVTGASSGIGAATALHLAKLDAKLAITGRNVEQLNKVSESCQSVSKNKPLVI 60
M+ KV LVTGAS GIG A LA A + T + K S + K +
Sbjct: 1 MSLNEKVALVTGASRGIGFEVAHALASKGATVVGTATSQASAEKFENSMKE-KGFKARGL 59
Query: 61 QADLTSEEDTKRIIDTVVKHYQKLNVLVNNA 91
+++ E + + +++LVNNA
Sbjct: 60 VLNISDIESIQNFFAEIKAENLAIDILVNNA 90
>3osu_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics,
csgid, center for structural genomics O infectious
diseases; 1.90A {Staphylococcus aureus subsp} PDB:
3sj7_A*
Length = 246
Score = 149 bits (380), Expect = 3e-44
Identities = 73/242 (30%), Positives = 108/242 (44%), Gaps = 51/242 (21%)
Query: 92 VTGASSGIGAATALHLAKLDAKLAI-TGRNVEQLNKVSESCQSVSKNKPLVIQADLTSEE 150
VTGAS GIG + AL LA+ +A+ + E+ V E ++ IQA++ +
Sbjct: 9 VTGASRGIGRSIALQLAEEGYNVAVNYAGSKEKAEAVVEEIKA-KGVDSFAIQANVADAD 67
Query: 151 DTKRIIDTVVKHYQKLNVLVNNAG---------------------N-------------- 175
+ K +I VV + L+VLVNNAG N
Sbjct: 68 EVKAMIKEVVSQFGSLDVLVNNAGITRDNLLMRMKEQEWDDVIDTNLKGVFNCIQKATPQ 127
Query: 176 --------IVNVSSVNGLRSFPGVLAYCVSKAAVDQFTSCTALELASKGVRVNSVNPGVT 227
I+N+SSV G PG Y +KA V T A ELAS+G+ VN+V PG
Sbjct: 128 MLRQRSGAIINLSSVVGAVGNPGQANYVATKAGVIGLTKSAARELASRGITVNAVAPGFI 187
Query: 228 LTNLHKNSGIDQQAYQNFLERSKETHALGRVGNPEEVAKAIAFLASDDASFTTGEHLTVD 287
++++ + + E+ L R G ++A +AFLASD A + TG+ + V+
Sbjct: 188 VSDMTDALSDELK------EQMLTQIPLARFGQDTDIANTVAFLASDKAKYITGQTIHVN 241
Query: 288 GG 289
GG
Sbjct: 242 GG 243
Score = 82.9 bits (206), Expect = 7e-19
Identities = 32/89 (35%), Positives = 47/89 (52%), Gaps = 2/89 (2%)
Query: 4 TGKVILVTGASSGIGAATALHLAKLDAKLAI-TGRNVEQLNKVSESCQSVSKNKPLVIQA 62
K LVTGAS GIG + AL LA+ +A+ + E+ V E ++ IQA
Sbjct: 3 MTKSALVTGASRGIGRSIALQLAEEGYNVAVNYAGSKEKAEAVVEEIKA-KGVDSFAIQA 61
Query: 63 DLTSEEDTKRIIDTVVKHYQKLNVLVNNA 91
++ ++ K +I VV + L+VLVNNA
Sbjct: 62 NVADADEVKAMIKEVVSQFGSLDVLVNNA 90
>3h7a_A Short chain dehydrogenase; oxidoreductase, PSI-2, NYSGXRC,
structural genomics, protein structure initiative; 1.87A
{Rhodopseudomonas palustris}
Length = 252
Score = 149 bits (379), Expect = 4e-44
Identities = 42/289 (14%), Positives = 78/289 (26%), Gaps = 61/289 (21%)
Query: 1 MNFTGKVILVTGASSGIGAATALHLAKLDAKLAITGRNVEQLNKVSESCQSVSKNKPLVI 60
+ + V GA IGA A A + RN E+L + ++ + + +
Sbjct: 3 LTPRNATVAVIGAGDYIGAEIAKKFAAEGFTVFAGRRNGEKLAPLVAEIEA-AGGRIVAR 61
Query: 61 QADLTSEEDTKRIIDTVVKHYQKLNVLVNNAVTGASSGIGAATALHLAKLDAKLAITGRN 120
D +E++ ++ + L V + N G + L+
Sbjct: 62 SLDARNEDEVTAFLNAA-DAHAPLEVTIFNV------GANVNFPI----LE--------- 101
Query: 121 VEQLNKVSESCQSVSKNKPLVIQADLTSEEDTKRIIDTVVK------HYQKLNVLVNNAG 174
T++ +++ + +L + G
Sbjct: 102 --------------------------TTDRVFRKVWEMACWAGFVSGRESARLMLAHGQG 135
Query: 175 NIVNVSSVNGLRSFPGVLAYCVSKAAVDQFTSCTALELASKGVRV-NSVNPGVTLTNLHK 233
I + LR G A+ +K + A EL K + V + + T +
Sbjct: 136 KIFFTGATASLRGGSGFAAFASAKFGLRAVAQSMARELMPKNIHVAHLIIDSGVDTAWVR 195
Query: 234 NSGIDQQAYQNFLERSKETHALGRVGNPEEVAKAIAFLASDDASFTTGE 282
+ P VA A L S T E
Sbjct: 196 ERREQM-------FGKDALANPDLLMPPAAVAGAYWQLYQQPKSAWTFE 237
>1uzm_A 3-oxoacyl-[acyl-carrier protein] reductase; beta-ketoacyl
reductase, oxidoreductase; 1.49A {Mycobacterium
tuberculosis} SCOP: c.2.1.2 PDB: 1uzn_A* 2ntn_A 1uzl_A
Length = 247
Score = 149 bits (379), Expect = 4e-44
Identities = 75/295 (25%), Positives = 112/295 (37%), Gaps = 69/295 (23%)
Query: 1 MNFTGKVILVTGASSGIGAATALHLAKLDAKLAITGRNVEQLNKVSESCQSVSKNKPLVI 60
F + +LVTG + GIG A A LA K+A+T R + +
Sbjct: 11 PPFVSRSVLVTGGNRGIGLAIAQRLAADGHKVAVTHRGSGAPKGL------------FGV 58
Query: 61 QADLTSEEDTKRIIDTVVKHYQKLNVLVNNAVTGASSGIGAATALHLAKLDAKLAITGRN 120
+ D+T + R V +H + VLV+NA ++
Sbjct: 59 EVDVTDSDAVDRAFTAVEEHQGPVEVLVSNA-----------------------GLSADA 95
Query: 121 V------EQLNKVSESCQSVSKNKPLVIQADLTSEEDTKRIIDTVVKHYQKLNVLVNNAG 174
E+ KV I A+LT R+ + Q+ N G
Sbjct: 96 FLMRMTEEKFEKV--------------INANLTG---AFRVAQRASRSMQR-----NKFG 133
Query: 175 NIVNVSSVNGLRSFPGVLAYCVSKAAVDQFTSCTALELASKGVRVNSVNPGVTLTNLHKN 234
++ + SV+GL Y SKA V A EL+ V N V PG T++ +
Sbjct: 134 RMIFIGSVSGLWGIGNQANYAASKAGVIGMARSIARELSKANVTANVVAPGYIDTDMTRA 193
Query: 235 SGIDQQAYQNFLERSKETHALGRVGNPEEVAKAIAFLASDDASFTTGEHLTVDGG 289
Q + + + RVG P EVA ++FLAS+DAS+ +G + VDGG
Sbjct: 194 LDERIQ------QGALQFIPAKRVGTPAEVAGVVSFLASEDASYISGAVIPVDGG 242
>3gk3_A Acetoacetyl-COA reductase; acetoacetyl-CO reductase,
oxidoreductase, structural genomics; 2.10A {Burkholderia
pseudomallei 1710B}
Length = 269
Score = 150 bits (380), Expect = 6e-44
Identities = 67/242 (27%), Positives = 101/242 (41%), Gaps = 50/242 (20%)
Query: 92 VTGASSGIGAATALHLAKLDAKLAITG-RNVEQLNKVSESCQSVSKNKPLVIQADLTSEE 150
VTG G+GAA + L +A++ + ++ + + D+ E
Sbjct: 30 VTGGMGGLGAAISRRLHDAGMAVAVSHSERNDHVSTWLMHERDAGR-DFKAYAVDVADFE 88
Query: 151 DTKRIIDTVVKHYQKLNVLVNNAG---------------------N-------------- 175
+R + V+ + K++VL+NNAG +
Sbjct: 89 SCERCAEKVLADFGKVDVLINNAGITRDATFMKMTKGDWDAVMRTDLDAMFNVTKQFIAG 148
Query: 176 --------IVNVSSVNGLRSFPGVLAYCVSKAAVDQFTSCTALELASKGVRVNSVNPGVT 227
IVN+ SVNG R G Y +KA + FT ALE A +G+ VN+V+PG
Sbjct: 149 MVERRFGRIVNIGSVNGSRGAFGQANYASAKAGIHGFTKTLALETAKRGITVNTVSPGYL 208
Query: 228 LTNLHKNSGIDQQAYQNFLERSKETHALGRVGNPEEVAKAIAFLASDDASFTTGEHLTVD 287
T + + D + +GR+G P+EVA IAFL SDDA F TG L ++
Sbjct: 209 ATAMVEAVPQDVLE-----AKILPQIPVGRLGRPDEVAALIAFLCSDDAGFVTGADLAIN 263
Query: 288 GG 289
GG
Sbjct: 264 GG 265
Score = 75.7 bits (187), Expect = 3e-16
Identities = 20/89 (22%), Positives = 39/89 (43%), Gaps = 2/89 (2%)
Query: 4 TGKVILVTGASSGIGAATALHLAKLDAKLAITG-RNVEQLNKVSESCQSVSKNKPLVIQA 62
+V VTG G+GAA + L +A++ + ++ + +
Sbjct: 24 AKRVAFVTGGMGGLGAAISRRLHDAGMAVAVSHSERNDHVSTWLMHERDAGR-DFKAYAV 82
Query: 63 DLTSEEDTKRIIDTVVKHYQKLNVLVNNA 91
D+ E +R + V+ + K++VL+NNA
Sbjct: 83 DVADFESCERCAEKVLADFGKVDVLINNA 111
>3grp_A 3-oxoacyl-(acyl carrierprotein) reductase; structural genomics,
oxidoreductase, S structural genomics center for
infectious disease, ssgcid; 2.09A {Bartonella henselae}
PDB: 3enn_A 3emk_A
Length = 266
Score = 148 bits (376), Expect = 2e-43
Identities = 60/241 (24%), Positives = 104/241 (43%), Gaps = 53/241 (21%)
Query: 92 VTGASSGIGAATALHLAKLDAKLAITGRNVEQLNKVSESCQSVSKNKPLVIQADLTSEED 151
VTGA+ GIG A A A + + G ++L +++ V A+L+ +
Sbjct: 32 VTGATGGIGEAIARCFHAQGAIVGLHGTREDKLKEIAADL----GKDVFVFSANLSDRKS 87
Query: 152 TKRIIDTVVKHYQKLNVLVNNAG---------------------N--------------- 175
K++ + + + +++LVNNAG N
Sbjct: 88 IKQLAEVAEREMEGIDILVNNAGITRDGLFVRMQDQDWDDVLAVNLTAASTLTRELIHSM 147
Query: 176 -------IVNVSSVNGLRSFPGVLAYCVSKAAVDQFTSCTALELASKGVRVNSVNPGVTL 228
I+N++S+ G+ PG YC +KA + F+ A E+AS+ + VN + PG
Sbjct: 148 MRRRYGRIINITSIVGVVGNPGQTNYCAAKAGLIGFSKALAQEIASRNITVNCIAPGFIK 207
Query: 229 TNLHKNSGIDQQAYQNFLERSKETHALGRVGNPEEVAKAIAFLASDDASFTTGEHLTVDG 288
+ + Q+ E + R+G EE+A A +LASD+A++ TG+ L ++G
Sbjct: 208 SAMTDKLNEKQK------EAIMAMIPMKRMGIGEEIAFATVYLASDEAAYLTGQTLHING 261
Query: 289 G 289
G
Sbjct: 262 G 262
Score = 89.5 bits (223), Expect = 4e-21
Identities = 24/91 (26%), Positives = 44/91 (48%), Gaps = 4/91 (4%)
Query: 1 MNFTGKVILVTGASSGIGAATALHLAKLDAKLAITGRNVEQLNKVSESCQSVSKNKPLVI 60
TG+ LVTGA+ GIG A A A + + G ++L +++ V
Sbjct: 23 FKLTGRKALVTGATGGIGEAIARCFHAQGAIVGLHGTREDKLKEIAADL----GKDVFVF 78
Query: 61 QADLTSEEDTKRIIDTVVKHYQKLNVLVNNA 91
A+L+ + K++ + + + +++LVNNA
Sbjct: 79 SANLSDRKSIKQLAEVAEREMEGIDILVNNA 109
>3ioy_A Short-chain dehydrogenase/reductase SDR; structural genomics,
oxidoreductase, PSI-2, protein structure initiative;
1.90A {Novosphingobium aromaticivorans DSM12444}
Length = 319
Score = 147 bits (374), Expect = 1e-42
Identities = 45/286 (15%), Positives = 97/286 (33%), Gaps = 64/286 (22%)
Query: 2 NFTGKVILVTGASSGIGAATALHLAKLDAKLAITGRNVEQLNKVSESCQSVSKNKP-LVI 60
+F G+ VTG ++G+G L K+AI + ++K + ++ + +
Sbjct: 5 DFAGRTAFVTGGANGVGIGLVRQLLNQGCKVAIADIRQDSIDKALATLEAEGSGPEVMGV 64
Query: 61 QADLTSEEDTKRIIDTVVKHYQKLNVLVNNAVTGASSGIGAATALHLAKLDAKLAITGRN 120
Q D+ S E K D V + +++L NNA G+ +
Sbjct: 65 QLDVASREGFKMAADEVEARFGPVSILCNNA------GVNLFQPI--------------- 103
Query: 121 VEQLNKVSESCQSVSKNKPLVIQADLTSEEDTKRIID-----------TVVKH-YQKLNV 168
+ +S +D ++ T V +++
Sbjct: 104 ------------------------EESSYDDWDWLLGVNLHGVVNGVTTFVPRMVERVKA 139
Query: 169 LVNNAGNIVNVSSVNGLRSFPGVLAYCVSKAAVDQFTSCTALELASKGVRVNSVNPGVTL 228
G++VN +S+ + Y +K AV + L + V+ + PG+
Sbjct: 140 GEQKGGHVVNTASMAAFLAAGSPGIYNTTKFAVRGLSESLHYSLLKYEIGVSVLCPGLVK 199
Query: 229 TNLHKNSGIDQQAYQNFLERSKET-----HALGRVG-NPEEVAKAI 268
+ ++ + I A + ++ +T + G P+ + +
Sbjct: 200 SYIYASDDIRPDALKGEVKPVDKTAVERLAGVHEFGMEPDVIGARV 245
>1edo_A Beta-keto acyl carrier protein reductase; nucleotide fold, rossmann
fold, oxidoreductase; HET: NAP; 2.30A {Brassica napus}
SCOP: c.2.1.2 PDB: 2cdh_G
Length = 244
Score = 145 bits (369), Expect = 1e-42
Identities = 72/243 (29%), Positives = 109/243 (44%), Gaps = 52/243 (21%)
Query: 92 VTGASSGIGAATALHLAKLDAKLAITG-RNVEQLNKVSESCQSVSKNKPLVIQADLTSEE 150
VTGAS GIG A AL L K K+ + R+ + +VS+ ++ + + D++ E
Sbjct: 6 VTGASRGIGKAIALSLGKAGCKVLVNYARSAKAAEEVSKQIEA-YGGQAITFGGDVSKEA 64
Query: 151 DTKRIIDTVVKHYQKLNVLVNNAG---------------------N-------------- 175
D + ++ T + + ++V+VNNAG N
Sbjct: 65 DVEAMMKTAIDAWGTIDVVVNNAGITRDTLLIRMKKSQWDEVIDLNLTGVFLCTQAATKI 124
Query: 176 --------IVNVSSVNGLRSFPGVLAYCVSKAAVDQFTSCTALELASKGVRVNSVNPGVT 227
I+N++SV GL G Y +KA V F+ A E AS+ + VN V PG
Sbjct: 125 MMKKRKGRIINIASVVGLIGNIGQANYAAAKAGVIGFSKTAAREGASRNINVNVVCPGFI 184
Query: 228 LTNLHKNSGIDQQAYQNFLERSKETHALGRVGNPEEVAKAIAFLA-SDDASFTTGEHLTV 286
+++ G D + ++ T LGR G PE VA + FLA S AS+ TG+ T+
Sbjct: 185 ASDMTAKLGEDME------KKILGTIPLGRTGQPENVAGLVEFLALSPAASYITGQAFTI 238
Query: 287 DGG 289
DGG
Sbjct: 239 DGG 241
Score = 78.7 bits (195), Expect = 2e-17
Identities = 27/87 (31%), Positives = 49/87 (56%), Gaps = 2/87 (2%)
Query: 6 KVILVTGASSGIGAATALHLAKLDAKLAITG-RNVEQLNKVSESCQSVSKNKPLVIQADL 64
V++VTGAS GIG A AL L K K+ + R+ + +VS+ ++ + + D+
Sbjct: 2 PVVVVTGASRGIGKAIALSLGKAGCKVLVNYARSAKAAEEVSKQIEA-YGGQAITFGGDV 60
Query: 65 TSEEDTKRIIDTVVKHYQKLNVLVNNA 91
+ E D + ++ T + + ++V+VNNA
Sbjct: 61 SKEADVEAMMKTAIDAWGTIDVVVNNA 87
>2jah_A Clavulanic acid dehydrogenase; short-chain dehydrogenase/reductase,
lactamase inhibitor, AN biosynthesis, NADPH,
oxidoreductase; HET: MSE NDP; 1.80A {Streptomyces
clavuligerus} PDB: 2jap_A*
Length = 247
Score = 145 bits (368), Expect = 2e-42
Identities = 66/281 (23%), Positives = 112/281 (39%), Gaps = 64/281 (22%)
Query: 2 NFTGKVILVTGASSGIGAATALHLAKLDAKLAITGRNVEQLNKVSESCQSVSKNKPLVIQ 61
GKV L+TGASSGIG ATA LA A +AI R VE+L + + + + K V++
Sbjct: 4 ALQGKVALITGASSGIGEATARALAAEGAAVAIAARRVEKLRALGDELTA-AGAKVHVLE 62
Query: 62 ADLTSEEDTKRIIDTVVKHYQKLNVLVNNAVTGASSGIGAATALHLAKLDAKLAITGRNV 121
D+ + + + V+ L++LVNNA GI + A
Sbjct: 63 LDVADRQGVDAAVASTVEALGGLDILVNNA------GIMLLGPVEDADTT---------- 106
Query: 122 EQLNKVSESCQSVSKNKPLVIQADLTSEEDTKRIIDTVVKHYQKLNV-------LVNNAG 174
D R+IDT + + + L+ + G
Sbjct: 107 -----------------------------DWTRMIDTNLLGL--MYMTRAALPHLLRSKG 135
Query: 175 NIVNVSSVNGLRSFPGVLAYCVSKAAVDQFTSCTALELASKGVRVNSVNPGVTLTNLHKN 234
+V +SS+ G + Y +K V+ F+ E+ +GVRV + PG T T L +
Sbjct: 136 TVVQMSSIAGRVNVRNAAVYQATKFGVNAFSETLRQEVTERGVRVVVIEPGTTDTELRGH 195
Query: 235 S--GIDQQAYQNFLERSKETHALGRVGNPEEVAKAIAFLAS 273
++ Y+ + + L +++A+A+ + +
Sbjct: 196 ITHTATKEMYEQRIS---QIRKL----QAQDIAEAVRYAVT 229
>3e9n_A Putative short-chain dehydrogenase/reductase; structural genomics,
unknown function, oxidoreductase, PSI- 2; 2.40A
{Corynebacterium glutamicum}
Length = 245
Score = 145 bits (367), Expect = 2e-42
Identities = 59/293 (20%), Positives = 102/293 (34%), Gaps = 74/293 (25%)
Query: 1 MNFTGKVILVTGASSGIGAATALHLAKLDAKLAITGRNVEQLNKVSESCQSVSKNKPLVI 60
M+ K+ +VTGA+ G+G L++ D + GRN E L ++E I
Sbjct: 1 MSLKKKIAVVTGATGGMGIEIVKDLSR-DHIVYALGRNPEHLAALAEIEGV------EPI 53
Query: 61 QADLTSEEDTKRIIDTVVKHYQKLNVLVNNAVTGASSGIGAATALHLAKLDAKLAITGRN 120
++D+ E + +D +K+ ++ LV+ A + T + +
Sbjct: 54 ESDIVKEVLEEGGVDK-LKNLDHVDTLVHAA------AVARDTTIEAGSVA--------- 97
Query: 121 VEQLNKVSESCQSVSKNKPLVIQADLTSEEDTKRIIDTVVK---HYQK--LNVLVNNAGN 175
+ +D V + L L +G
Sbjct: 98 ------------------------------EWHAHLDLNVIVPAELSRQLLPALRAASGC 127
Query: 176 IVNVSSVNGLRSFPGVLAYCVSKAAVDQFTSCTALELASKGVRVNSVNPGVTLTNLHKNS 235
++ ++S G PG Y SK A+ E A+ G+RV++V+PG T T +
Sbjct: 128 VIYINSGAGNGPHPGNTIYAASKHALRGLADAFRKEEANNGIRVSTVSPGPTNTPM--LQ 185
Query: 236 GIDQQAYQNFLERSKETHALGRVGNPEEVAKAIAFLASDDASFTTGEHLTVDG 288
G+ NF P+E+A AI F+ GE +
Sbjct: 186 GLMDSQGTNFRPE--------IYIEPKEIANAIRFVID------AGETTQITN 224
>4dmm_A 3-oxoacyl-[acyl-carrier-protein] reductase; rossmann fold,
oxoacyl-ACP reductase, NADP binding, fatty AC
biosynthsis, oxidoreductase; HET: NAP; 2.38A
{Synechococcus elongatus} PDB: 4dml_A*
Length = 269
Score = 143 bits (362), Expect = 2e-41
Identities = 73/243 (30%), Positives = 112/243 (46%), Gaps = 55/243 (22%)
Query: 92 VTGASSGIGAATALHLAKLDAKLAIT-GRNVEQLNKVSESCQSVSKNKPLVIQADLTSEE 150
VTGAS GIG A AL LA AK+A+ + ++V + + + + ++AD++ E
Sbjct: 33 VTGASRGIGRAIALELAAAGAKVAVNYASSAGAADEVVAAIAA-AGGEAFAVKADVSQES 91
Query: 151 DTKRIIDTVVKHYQKLNVLVNNAG---------------------N-------------- 175
+ + + V++ + +L+VLVNNAG N
Sbjct: 92 EVEALFAAVIERWGRLDVLVNNAGITRDTLLLRMKRDDWQSVLDLNLGGVFLCSRAAAKI 151
Query: 176 --------IVNVSSVNGLRSFPGVLAYCVSKAAVDQFTSCTALELASKGVRVNSVNPGVT 227
I+N++SV G PG Y +KA V T A ELAS+G+ VN+V PG
Sbjct: 152 MLKQRSGRIINIASVVGEMGNPGQANYSAAKAGVIGLTKTVAKELASRGITVNAVAPGFI 211
Query: 228 LTNLHKNSGIDQQAYQNFLERSKETHALGRVGNPEEVAKAIAFLASDD-ASFTTGEHLTV 286
T++ S + + E LGR G EVA + FLA+D A++ TG+ + +
Sbjct: 212 ATDM--TSELAAEKL-------LEVIPLGRYGEAAEVAGVVRFLAADPAAAYITGQVINI 262
Query: 287 DGG 289
DGG
Sbjct: 263 DGG 265
Score = 86.1 bits (214), Expect = 6e-20
Identities = 30/92 (32%), Positives = 54/92 (58%), Gaps = 2/92 (2%)
Query: 1 MNFTGKVILVTGASSGIGAATALHLAKLDAKLAIT-GRNVEQLNKVSESCQSVSKNKPLV 59
+ T ++ LVTGAS GIG A AL LA AK+A+ + ++V + + + +
Sbjct: 24 LPLTDRIALVTGASRGIGRAIALELAAAGAKVAVNYASSAGAADEVVAAIAA-AGGEAFA 82
Query: 60 IQADLTSEEDTKRIIDTVVKHYQKLNVLVNNA 91
++AD++ E + + + V++ + +L+VLVNNA
Sbjct: 83 VKADVSQESEVEALFAAVIERWGRLDVLVNNA 114
>3tpc_A Short chain alcohol dehydrogenase-related dehydro; structural
genomics, PSI-biology, NEW YORK structural genomi
research consortium; 2.34A {Sinorhizobium meliloti}
Length = 257
Score = 141 bits (357), Expect = 8e-41
Identities = 72/299 (24%), Positives = 115/299 (38%), Gaps = 47/299 (15%)
Query: 1 MNFTGKVILVTGASSGIGAATALHLAKLDAKLAITGRNVEQLNKVSESCQSVSKNKPLVI 60
M +V +VTGASSG+GAA LA+ A + + + +
Sbjct: 3 MQLKSRVFIVTGASSGLGAAVTRMLAQEGATVLGLDLKPPAGEEPAAELGA----AVRFR 58
Query: 61 QADLTSEEDTKRIIDTVVKHYQKLNVLVNNA-VTGASSGIGAATALHLAKLDAKLAI--T 117
AD+T+E D + + + ++ LVN A +G + L +A+
Sbjct: 59 NADVTNEADATAALAFAKQEFGHVHGLVNCAGTAPGEKILGRSGPHALDSFARTVAVNLI 118
Query: 118 GRNVEQLNKVSESCQSVSKNKPLVIQADLTSEEDTKRIIDTVVKHYQKLNVLVNNAGNIV 177
G N + + + +S+ +P + D +R G IV
Sbjct: 119 G----TFNMIRLAAEVMSQGEP---------DADGER-------------------GVIV 146
Query: 178 NVSSVNGLRSFPGVLAYCVSKAAVDQFTSCTALELASKGVRVNSVNPGVTLTNLHKNSGI 237
N +S+ G AY SK V T A ELA G+RV ++ PG+ T + +G+
Sbjct: 147 NTASIAAFDGQIGQAAYAASKGGVAALTLPAARELARFGIRVVTIAPGIFDTPMM--AGM 204
Query: 238 DQQAYQNFLERSKETHALGRVGNPEEVAKAIAFLASDDASFTTGEHLTVDGGRHAMCPR 296
Q Q+ L S R+G EE A + + + GE + +DG M PR
Sbjct: 205 PQDV-QDALAASVPF--PPRLGRAEEYAALVKHICENT--MLNGEVIRLDGALR-MAPR 257
>3guy_A Short-chain dehydrogenase/reductase SDR; structural genomics,
oxidoreductase, PSI-2, protein structur initiative;
1.90A {Vibrio parahaemolyticus}
Length = 230
Score = 140 bits (355), Expect = 8e-41
Identities = 46/273 (16%), Positives = 87/273 (31%), Gaps = 71/273 (26%)
Query: 6 KVILVTGASSGIGAATALHLAKLDAKLAITGRNVEQLNKVSESCQSVSKNKPLVIQADLT 65
+I++TGASSG+GA A +TGR+ +L+ V+ + DL
Sbjct: 2 SLIVITGASSGLGAELAKLYDAEGKATYLTGRSESKLSTVTNCLSN----NVGYRARDLA 57
Query: 66 SEEDTKRIIDTVVKHYQKLNVLVNNAVTGASSGIGAATALHLAKLDAKLAITGRNVEQLN 125
S ++ +++ + + + +V++A G G L +
Sbjct: 58 SHQEVEQLFEQL---DSIPSTVVHSA------GSGYFGLLQEQDPE-------------- 94
Query: 126 KVSESCQSVSKNKPLVIQADLTSEEDTKRIIDTVVK-----HYQKLNVLVNNAGNIVNVS 180
+ +I+ + + + + N+V +
Sbjct: 95 -------------------------QIQTLIENNLSSAINVLRELVKRYKDQPVNVVMIM 129
Query: 181 SVNGLRSFPGVLAYCVSKAAVDQFTSCTALELASKGVRVNSVNPGVTLTNLHKNSGIDQQ 240
S + YC K AV LEL K +++ +V PG T
Sbjct: 130 STAAQQPKAQESTYCAVKWAVKGLIESVRLELKGKPMKIIAVYPGGMAT----------- 178
Query: 241 AYQNFLERSKETHALGRVGNPEEVAKAIAFLAS 273
F E S ++ + E+ A I +
Sbjct: 179 ---EFWETSGKSLDTSSFMSAEDAALMIHGALA 208
>3tjr_A Short chain dehydrogenase; structural genomics, seattle structural
genomics center for infectious disease, ssgcid, SCD,
NAD; HET: UNL; 1.60A {Mycobacterium avium subsp}
Length = 301
Score = 142 bits (360), Expect = 9e-41
Identities = 54/278 (19%), Positives = 93/278 (33%), Gaps = 57/278 (20%)
Query: 2 NFTGKVILVTGASSGIGAATALHLAKLDAKLAITGRNVEQLNKVSESCQSVSKNKPLVIQ 61
F G+ +VTG +SGIG ATA A+ A+L ++ + L + + +
Sbjct: 28 GFDGRAAVVTGGASGIGLATATEFARRGARLVLSDVDQPALEQAVNGLRGQG-FDAHGVV 86
Query: 62 ADLTSEEDTKRIIDTVVKHYQKLNVLVNNAVTGASSGIGAATALHLAKLDAKLAITGRNV 121
D+ ++ R+ D + ++V+ +NA GI A L
Sbjct: 87 CDVRHLDEMVRLADEAFRLLGGVDVVFSNA------GIVVAGPL---------------- 124
Query: 122 EQLNKVSESCQSVSKNKPLVIQADLTSEEDTKRIIDT-------VVKHYQKLNVLVNNAG 174
+ +D + +ID V+ + + G
Sbjct: 125 -----------------------AQMNHDDWRWVIDIDLWGSIHAVEAFLPRLLEQGTGG 161
Query: 175 NIVNVSSVNGLRSFPGVLAYCVSKAAVDQFTSCTALELASKGVRVNSVNPGVTLTNLHKN 234
+I +S GL G+ Y V+K V A E+ G+ V+ + P V T L N
Sbjct: 162 HIAFTASFAGLVPNAGLGTYGVAKYGVVGLAETLAREVKPNGIGVSVLCPMVVETKLVSN 221
Query: 235 S----GIDQQAYQNFLERSKETHALGRVGNPEEVAKAI 268
S G D + ++VA+
Sbjct: 222 SERIRGADYGMSATPEGAFGPLPTQDESVSADDVARLT 259
>1ooe_A Dihydropteridine reductase; structural genomics, PSI, protein
structure initiative, southeast collaboratory for
structural genomics; HET: MES; 1.65A {Caenorhabditis
elegans} SCOP: c.2.1.2
Length = 236
Score = 140 bits (354), Expect = 1e-40
Identities = 30/296 (10%), Positives = 80/296 (27%), Gaps = 78/296 (26%)
Query: 4 TGKVILVTGASSGIGAATALHLAKLDAKLAITGRNVEQLNKVSESCQSVSKNKPLVIQAD 63
+ ++V G +G+A K + + ++S +++ +
Sbjct: 2 SSGKVIVYGGKGALGSAILEFFKKNGYTVLNIDLSANDQ---ADSN--------ILVDGN 50
Query: 64 LTSEEDTKRIIDTVVK--HYQKLNVLVNNAVTGASSGIGAATALHLAKLDAKLAITGRNV 121
E + I++ +++ + A G A +
Sbjct: 51 KNWTEQEQSILEQTASSLQGSQVDGVFCVA------GGWAGGSA---------------- 88
Query: 122 EQLNKVSESCQSVSKNKPLVIQADLTSEEDTKRIIDTVVKHYQKLNVLV----NNAGNIV 177
+ ++ +I V L G +
Sbjct: 89 ----------------------SSKDFVKNADLMIKQSVWSSAIAAKLATTHLKPGGLLQ 126
Query: 178 NVSSVNGLRSFPGVLAYCVSKAAVDQFTSCTALELAS--KGVRVNSVNPGVTLTNLHKNS 235
+ + P ++ Y ++KAAV TS A + + V ++ P T +++
Sbjct: 127 LTGAAAAMGPTPSMIGYGMAKAAVHHLTSSLAAKDSGLPDNSAVLTIMPVTLDTPMNRKW 186
Query: 236 GIDQQAYQNFLERSKETHALGRVGNPEEVAKAIAFLASDDASF-TTGEHLTVDGGR 290
+ +++ + ++ +S ++G L +
Sbjct: 187 MPNADH--------------SSWTPLSFISEHLLKWTTETSSRPSSGALLKITTEN 228
>2o23_A HADH2 protein; HSD17B10, schad, ERAB, type II HADH,
2-methyl-3-hydroxybuTyr dehydrogenase, MHBD, structural
genomics, structural genomi consortium; HET: NAD GOL;
1.20A {Homo sapiens} SCOP: c.2.1.2 PDB: 1so8_A 1u7t_A*
1e3s_A* 1e3w_B* 1e3w_A* 1e6w_A*
Length = 265
Score = 140 bits (355), Expect = 2e-40
Identities = 65/296 (21%), Positives = 114/296 (38%), Gaps = 52/296 (17%)
Query: 1 MNFTGKVILVTGASSGIGAATALHLAKLDAKLAITGRNVEQLNKVSESCQSVSKNKPLVI 60
+ G V ++TG +SG+G ATA L A + ++ + +
Sbjct: 8 RSVKGLVAVITGGASGLGLATAERLVGQGASAVLLDLPNSGGEAQAKKLGN----NCVFA 63
Query: 61 QADLTSEEDTKRIIDTVVKHYQKLNVLVNNAVTGASSGIGAATALHLAKLDAKLAITG-R 119
AD+TSE+D + + + +++V VN A GI A+ + K + +
Sbjct: 64 PADVTSEKDVQTALALAKGKFGRVDVAVNCA------GIAVASKTYNLKKGQTHTLEDFQ 117
Query: 120 NVEQLNKV------SESCQSVSKNKPLVIQADLTSEEDTKRIIDTVVKHYQKLNVLVNNA 173
V +N + + +N+P ++ +R
Sbjct: 118 RVLDVNLMGTFNVIRLVAGEMGQNEP---------DQGGQR------------------- 149
Query: 174 GNIVNVSSVNGLRSFPGVLAYCVSKAAVDQFTSCTALELASKGVRVNSVNPGVTLTNLHK 233
G I+N +SV G AY SK + T A +LA G+RV ++ PG+ T L
Sbjct: 150 GVIINTASVAAFEGQVGQAAYSASKGGIVGMTLPIARDLAPIGIRVMTIAPGLFGTPLL- 208
Query: 234 NSGIDQQAYQNFLERSKETHALGRVGNPEEVAKAIAFLASDDASFTTGEHLTVDGG 289
+ + ++ NFL R+G+P E A + + + F GE + +DG
Sbjct: 209 -TSLPEKV-CNFLASQVPF--PSRLGDPAEYAHLVQAII--ENPFLNGEVIRLDGA 258
>3tfo_A Putative 3-oxoacyl-(acyl-carrier-protein) reducta; structural
genomics, PSI-biology, NEW YORK structural genomi
research consortium; 2.08A {Sinorhizobium meliloti}
Length = 264
Score = 139 bits (354), Expect = 3e-40
Identities = 62/280 (22%), Positives = 97/280 (34%), Gaps = 69/280 (24%)
Query: 4 TGKVILVTGASSGIGAATALHLAKLDAKLAITGRNVEQLNKVSESCQSVSKNKPLVIQAD 63
KVIL+TGAS GIG A L AK+ + R ++ ++ + + L D
Sbjct: 3 MDKVILITGASGGIGEGIARELGVAGAKILLGARRQARIEAIATEIRD-AGGTALAQVLD 61
Query: 64 LTSEEDTKRIIDTVVKHYQKLNVLVNNAVTGASSGIGAATALHLAKLDAKLAITGRNVEQ 123
+T V + +++VLVNNA G+ + L K+D
Sbjct: 62 VTDRHSVAAFAQAAVDTWGRIDVLVNNA------GVMPLSPLAAVKVD------------ 103
Query: 124 LNKVSESCQSVSKNKPLVIQADLTSEEDTKRIIDTVVKHYQKLNV--------LVNNAGN 175
+ +R+ID +K L +G
Sbjct: 104 ---------------------------EWERMIDVNIKGV--LWGIGAVLPIMEAQRSGQ 134
Query: 176 IVNVSSVNGLRSFPGVLAYCVSKAAVDQFTSCTALELASKGVRVNSVNPGVTLTNL--HK 233
I+N+ S+ L P YC +K AV + L S +RV VNPGV + L
Sbjct: 135 IINIGSIGALSVVPTAAVYCATKFAVRAIS--DGLRQESTNIRVTCVNPGVVESELAGTI 192
Query: 234 NSGIDQQAYQNFLERSKETHALGRVGNPEEVAKAIAFLAS 273
A + AL P ++A+A+ +
Sbjct: 193 THEETMAAMDTY-----RAIAL----QPADIARAVRQVIE 223
>3p19_A BFPVVD8, putative blue fluorescent protein; rossmann-fold,
oxidoreductase; HET: NAP; 2.05A {Vibrio vulnificus}
Length = 266
Score = 138 bits (351), Expect = 9e-40
Identities = 65/282 (23%), Positives = 103/282 (36%), Gaps = 70/282 (24%)
Query: 2 NFTGKVILVTGASSGIGAATALHLAKLDAKLAITGRNVEQLNKVSESCQSVSKNKPLVIQ 61
K++++TGASSGIG A A ++ L + R VE+L ++ L Q
Sbjct: 13 GSMKKLVVITGASSGIGEAIARRFSEEGHPLLLLARRVERLKALNLP-------NTLCAQ 65
Query: 62 ADLTSEEDTKRIIDTVVKHYQKLNVLVNNAVTGASSGIGAATALHLAKLDAKLAITGRNV 121
D+T + I K Y + +VNNA G+ + + +
Sbjct: 66 VDVTDKYTFDTAITRAEKIYGPADAIVNNA------GMMLLGQIDTQEAN---------- 109
Query: 122 EQLNKVSESCQSVSKNKPLVIQADLTSEEDTKRIIDTVVKHYQKLNV--------LVNNA 173
+ +R+ D V LN N
Sbjct: 110 -----------------------------EWQRMFDVNVLGL--LNGMQAVLAPMKARNC 138
Query: 174 GNIVNVSSVNGLRSFPGVLAYCVSKAAVDQFTSCTALELASKGVRVNSVNPGVTLTNL-- 231
G I+N+SS+ G ++FP AYC +K AV + E+A+ VRV ++ P T L
Sbjct: 139 GTIINISSIAGKKTFPDHAAYCGTKFAVHAISENVREEVAASNVRVMTIAPSAVKTELLS 198
Query: 232 HKNSGIDQQAYQNFLERSKETHALGRVGNPEEVAKAIAFLAS 273
H S + Y + R L ++VA+A+ F
Sbjct: 199 HTTSQQIKDGYDAW--RVDMGGVL----AADDVARAVLFAYQ 234
>3l77_A Short-chain alcohol dehydrogenase; oxidoreductase; HET: NJP PG4;
1.60A {Thermococcus sibiricus}
Length = 235
Score = 136 bits (345), Expect = 3e-39
Identities = 49/277 (17%), Positives = 89/277 (32%), Gaps = 72/277 (25%)
Query: 5 GKVILVTGASSGIGAATALHLAKLDAKLAITGRNVEQLNKVSESCQSVSKNKPLVIQADL 64
KV ++TGAS GIG A A LA+ LA+ R+V++L K++ + D+
Sbjct: 2 MKVAVITGASRGIGEAIARALARDGYALALGARSVDRLEKIAHELMQEQGVEVFYHHLDV 61
Query: 65 TSEEDTKRIIDTVVKHYQKLNVLVNNAVTGASSGIGAATALHLAKLDAKLAITGRNVEQL 124
+ E + V++ + ++V+V NA G+G L +
Sbjct: 62 SKAESVEEFSKKVLERFGDVDVVVANA------GLGYFKRLEELSEE------------- 102
Query: 125 NKVSESCQSVSKNKPLVIQADLTSEEDTKRIIDTVVKHYQKLNV--------LVNNAGNI 176
+ +I+ + +
Sbjct: 103 --------------------------EFHEMIEVNLLGV--WRTLKAFLDSLKRTGGLAL 134
Query: 177 VNVSSVNGLRSFPGVLAYCVSKAAVDQFTSCTALELASKGVRVNSVNPGVTLTNLHKNSG 236
V S V R P Y +K A ++ + VR + PG T +
Sbjct: 135 VTTSDV-SARLIPYGGGYVSTKWAARALV--RTFQIENPDVRFFELRPGAVDTYFGGSKP 191
Query: 237 IDQQAYQNFLERSKETHALGRVGNPEEVAKAIAFLAS 273
+ + +L+ P+E+A+A+ L
Sbjct: 192 -GKPKEKGYLK-------------PDEIAEAVRCLLK 214
>3rku_A Oxidoreductase YMR226C; substrate fingerprint, short chain
oxidoreductase, rossmann oxidoreductase; HET: NAP; 2.60A
{Saccharomyces cerevisiae}
Length = 287
Score = 137 bits (348), Expect = 4e-39
Identities = 75/284 (26%), Positives = 119/284 (41%), Gaps = 64/284 (22%)
Query: 2 NFTGKVILVTGASSGIGAATALHLAKL---DAKLAITGRNVEQLNKVSESCQSVSKN-KP 57
K +L+TGAS+GIG ATAL + D KL + R +E+L ++ ++ N K
Sbjct: 30 RLAKKTVLITGASAGIGKATALEYLEASNGDMKLILAARRLEKLEELKKTIDQEFPNAKV 89
Query: 58 LVIQADLTSEEDTKRIIDTVVKHYQKLNVLVNNAVTGASSGIGAATALHLAKLDAKLAIT 117
V Q D+T E K I+ + + ++ +++LVNNA G AL ++
Sbjct: 90 HVAQLDITQAEKIKPFIENLPQEFKDIDILVNNA------GK----ALGSDRVGQ----- 134
Query: 118 GRNVEQLNKVSESCQSVSKNKPLVIQADLTSEEDTKRIIDTVVK-----HYQKLNVLV-N 171
+ ED + + DT V L +
Sbjct: 135 -----------------------------IATEDIQDVFDTNVTALINITQAVLPIFQAK 165
Query: 172 NAGNIVNVSSVNGLRSFPGVLAYCVSKAAVDQFTSCTALELASKGVRVNSVNPGVTLTNL 231
N+G+IVN+ S+ G ++P YC SK AV FT EL + +RV + PG+ T
Sbjct: 166 NSGDIVNLGSIAGRDAYPTGSIYCASKFAVGAFTDSLRKELINTKIRVILIAPGLVETEF 225
Query: 232 --HKNSGIDQQAYQNFLERSKETHALGRVGNPEEVAKAIAFLAS 273
+ G ++QA + K+T L ++VA I + S
Sbjct: 226 SLVRYRGNEEQAKNVY----KDTTPL----MADDVADLIVYATS 261
>1xg5_A ARPG836; short chain dehydrogenase, human, SGC, structural
genomics, structural genomics consortium,
oxidoreductase; HET: NAP; 1.53A {Homo sapiens} SCOP:
c.2.1.2
Length = 279
Score = 136 bits (346), Expect = 6e-39
Identities = 58/290 (20%), Positives = 107/290 (36%), Gaps = 74/290 (25%)
Query: 2 NFTGKVILVTGASSGIGAATALHLAKLDAKLAITGRNVEQLNKVSESCQSVSKN-KPLVI 60
+ ++ LVTGAS GIGAA A L + K+ R V + +++ C+S +
Sbjct: 29 RWRDRLALVTGASGGIGAAVARALVQQGLKVVGCARTVGNIEELAAECKSAGYPGTLIPY 88
Query: 61 QADLTSEEDTKRIIDTVVKHYQKLNVLVNNAVTGASSGIGAATALHLAKLDAKLAITGRN 120
+ DL++EED + + + +++ +NNA G+ L
Sbjct: 89 RCDLSNEEDILSMFSAIRSQHSGVDICINNA------GLARPDTLLSGSTS--------- 133
Query: 121 VEQLNKVSESCQSVSKNKPLVIQADLTSEEDTKRIIDT-----------VVKHYQKLNVL 169
K + + + ++ NV
Sbjct: 134 ------------------------------GWKDMFNVNVLALSICTREAYQSMKERNV- 162
Query: 170 VNNAGNIVNVSSVNGLRSFP--GVLAYCVSKAAVDQFTSCTALELASKG--VRVNSVNPG 225
+ G+I+N++S++G R P Y +K AV T EL +R ++PG
Sbjct: 163 --DDGHIININSMSGHRVLPLSVTHFYSATKYAVTALTEGLRQELREAQTHIRATCISPG 220
Query: 226 VTLTNL--HKNSGIDQQAYQNFLERSKETHALGRVGNPEEVAKAIAFLAS 273
V T + ++A + ++ L PE+VA+A+ ++ S
Sbjct: 221 VVETQFAFKLHDKDPEKAAATY----EQMKCL----KPEDVAEAVIYVLS 262
>2nwq_A Probable short-chain dehydrogenase; oxidoreductase; 2.30A
{Pseudomonas aeruginosa}
Length = 272
Score = 136 bits (345), Expect = 9e-39
Identities = 60/281 (21%), Positives = 107/281 (38%), Gaps = 63/281 (22%)
Query: 2 NFTGKVILVTGASSGIGAATALHLAKLDAKLAITGRNVEQLNKVSESCQSVSKNKPLVIQ 61
+ + +TGA+SG G A A A+ L +TGR E+L ++ +K + L +
Sbjct: 18 SHMSSTLFITGATSGFGEACARRFAEAGWSLVLTGRREERLQALAGELS--AKTRVLPLT 75
Query: 62 ADLTSEEDTKRIIDTVVKHYQKLNVLVNNAVTGASSGIGAATALHLAKLDAKLAITGRNV 121
D+ +D + + + L L+NNA G+ AL +
Sbjct: 76 LDVRDRAAMSAAVDNLPEEFATLRGLINNA------GL----ALGTDPAQS--------- 116
Query: 122 EQLNKVSESCQSVSKNKPLVIQADLTSEEDTKRIIDTVVK-----HYQKLNVLV--NNAG 174
+D ++DT +K L L+
Sbjct: 117 -------------------------CDLDDWDTMVDTNIKGLLYSTRLLLPRLIAHGAGA 151
Query: 175 NIVNVSSVNGLRSFPGVLAYCVSKAAVDQFTSCTALELASKGVRVNSVNPGVTLTNL--H 232
+IVN+ SV G +PG Y +KA V+QF+ +L GVRV ++ PG+ +
Sbjct: 152 SIVNLGSVAGKWPYPGSHVYGGTKAFVEQFSLNLRCDLQGTGVRVTNLEPGLCESEFSLV 211
Query: 233 KNSGIDQQAYQNFLERSKETHALGRVGNPEEVAKAIAFLAS 273
+ G + + + H + PE++A+ I ++ +
Sbjct: 212 RFGGDQARYDKTY----AGAHPI----QPEDIAETIFWIMN 244
>3kvo_A Hydroxysteroid dehydrogenase-like protein 2; HSDL2, human
hydroxysteroid dehydrogenase like 2, SDHL2, STR
genomics, structural genomics consortium; HET: NAP;
2.25A {Homo sapiens}
Length = 346
Score = 138 bits (348), Expect = 1e-38
Identities = 56/295 (18%), Positives = 100/295 (33%), Gaps = 62/295 (21%)
Query: 2 NFTGKVILVTGASSGIGAATALHLAKLDAKLAITGRNVEQLNKVSESCQSVSKN------ 55
G + +TGAS GIG A AL AK A + I + + K+ + + ++
Sbjct: 42 RLAGCTVFITGASRGIGKAIALKAAKDGANIVIAAKTAQPHPKLLGTIYTAAEEIEAVGG 101
Query: 56 KPLVIQADLTSEEDTKRIIDTVVKHYQKLNVLVNNAVTGASSGIGAATALHLAKLDAKLA 115
K L D+ E+ ++ +K + +++LVNNA A S + +LD +
Sbjct: 102 KALPCIVDVRDEQQISAAVEKAIKKFGGIDILVNNA--SAIS-LTNTLDTPTKRLDLMMN 158
Query: 116 ITGRNVEQLNKVSESCQSVSKNKPLVIQADLTSEEDTKRIIDTVVKHYQKLNVLVNNAGN 175
+ R L +A + + +K + +
Sbjct: 159 VNTRGTY-----------------LASKA--------------CIPYLKK-----SKVAH 182
Query: 176 IVNVSSVNGLRS--FPGVLAYCVSKAAVDQFTSCTALELASKGVRVNSVNPGVTLTNLHK 233
I+N+S L F AY ++K + + A E + VN++ P
Sbjct: 183 ILNISPPLNLNPVWFKQHCAYTIAKYGMSMYVLGMAEEFKG-EIAVNALWPKTA------ 235
Query: 234 NSGIDQQAYQNFLERSKETHALGRVGNPEEVAKAIAFLASDDASFTTGEHLTVDG 288
I A E+ + +A A + SF TG + +
Sbjct: 236 ---IHTAAMDMLGGPGIESQC----RKVDIIADAAYSIFQKPKSF-TGNFVIDEN 282
>3u0b_A Oxidoreductase, short chain dehydrogenase/reducta protein;
structural genomics, ssgcid; 1.70A {Mycobacterium
smegmatis} PDB: 3lls_A 3q6i_A* 3m1l_A
Length = 454
Score = 139 bits (352), Expect = 3e-38
Identities = 72/299 (24%), Positives = 122/299 (40%), Gaps = 72/299 (24%)
Query: 3 FTGKVILVTGASSGIGAATALHLAKLDAKLAITGRN--VEQLNKVSESCQSVSKNKPLVI 60
GKV +VTGA+ GIGA A A+ A + + E L +V++ K +
Sbjct: 211 LDGKVAVVTGAARGIGATIAEVFARDGATVVAIDVDGAAEDLKRVAD------KVGGTAL 264
Query: 61 QADLTSEEDTKRIIDTVVKHY-QKLNVLVNNAVTGASSGIGAAT--ALHLAKLDAKLAIT 117
D+T+++ +I V +H+ K+++LVNNA GI T L LA +D
Sbjct: 265 TLDVTADDAVDKITAHVTEHHGGKVDILVNNA------GI---TRDKL-LANMDE----- 309
Query: 118 GRNVEQLNKVSESCQSVSKNKPLVIQADLTSEEDTKRIIDTVVKHYQKLNVLVNNAGNIV 177
++ + V I +L + + R+ + +V + G ++
Sbjct: 310 ----KRWDAV--------------IAVNLLAPQ---RLTEGLVGNGTI-----GEGGRVI 343
Query: 178 NVSSVNGLRSFPGVLAYCVSKAAVDQFTSCTALELASKGVRVNSVNPG-------VTLTN 230
+SS+ G+ G Y +KA + A LA KG+ +N+V PG +
Sbjct: 344 GLSSMAGIAGNRGQTNYATTKAGMIGLAEALAPVLADKGITINAVAPGFIETKMTEAIPL 403
Query: 231 LHKNSGIDQQAYQNFLERSKETHALGRVGNPEEVAKAIAFLASDDASFTTGEHLTVDGG 289
+ G +L + G P +VA+ IA+ AS ++ TG + V G
Sbjct: 404 ATREVGRRLN-------------SLFQGGQPVDVAELIAYFASPASNAVTGNTIRVCGQ 449
>3asu_A Short-chain dehydrogenase/reductase SDR; SDR family, rossmann-fold,
short-chain dehydrogenase/reducta ALLO-threonine
dehydrogenase; 1.90A {Escherichia coli} PDB: 3asv_A*
Length = 248
Score = 133 bits (336), Expect = 8e-38
Identities = 62/276 (22%), Positives = 112/276 (40%), Gaps = 65/276 (23%)
Query: 7 VILVTGASSGIGAATALHLAKLDAKLAITGRNVEQLNKVSESCQSVSKNKPLVIQADLTS 66
++LVTGA++G G + K+ TGR E+L ++ + + Q D+ +
Sbjct: 2 IVLVTGATAGFGECITRRFIQQGHKVIATGRRQERLQELKDELGD----NLYIAQLDVRN 57
Query: 67 EEDTKRIIDTVVKHYQKLNVLVNNAVTGASSGIGAATALHLAKLDAKLAITGRNVEQLNK 126
+ ++ ++ + +++LVNNA G+ AL +
Sbjct: 58 RAAIEEMLASLPAEWCNIDILVNNA------GL----ALGMEPAHK-------------- 93
Query: 127 VSESCQSVSKNKPLVIQADLTSEEDTKRIIDTVVK-----HYQKLNVLV-NNAGNIVNVS 180
S ED + +IDT K L +V N G+I+N+
Sbjct: 94 --------------------ASVEDWETMIDTNNKGLVYMTRAVLPGMVERNHGHIINIG 133
Query: 181 SVNGLRSFPGVLAYCVSKAAVDQFTSCTALELASKGVRVNSVNPGV---TLTNLHKNSGI 237
S G + G Y +KA V QF+ +L VRV + PG+ T + + G
Sbjct: 134 STAGSWPYAGGNVYGATKAFVRQFSLNLRTDLHGTAVRVTDIEPGLVGGTEFSNVRFKGD 193
Query: 238 DQQAYQNFLERSKETHALGRVGNPEEVAKAIAFLAS 273
D +A + + + T AL PE+V++A+ ++++
Sbjct: 194 DGKAEKTY----QNTVAL----TPEDVSEAVWWVST 221
>1yb1_A 17-beta-hydroxysteroid dehydrogenase type XI; short chain
dehydrogenase, HUM structural genomics, structural
genomics consortium, SGC; HET: AE2; 1.95A {Homo sapiens}
SCOP: c.2.1.2
Length = 272
Score = 133 bits (338), Expect = 1e-37
Identities = 67/284 (23%), Positives = 99/284 (34%), Gaps = 87/284 (30%)
Query: 2 NFTGKVILVTGASSGIGAATALHLAKLDAKLAITGRNVEQLNKVSESCQSVSKNKPLVIQ 61
+ TG+++L+TGA GIG TA AKL +KL + N L + + C+ + K
Sbjct: 28 SVTGEIVLITGAGHGIGRLTAYEFAKLKSKLVLWDINKHGLEETAAKCKGLG-AKVHTFV 86
Query: 62 ADLTSEEDTKRIIDTVVKHYQKLNVLVNNAVTGASSGIGAATALHLAKLDAKLAITGRNV 121
D ++ ED V +++LVNNA G+ ++
Sbjct: 87 VDCSNREDIYSSAKKVKAEIGDVSILVNNA------GVV----------------YTSDL 124
Query: 122 EQLNKVSESCQSVSKNKPLVIQADLTSEEDTKRIIDTVVKHYQKLNVL------------ 169
T + ++ + NVL
Sbjct: 125 FA-----------------------TQDPQIEKTFEV--------NVLAHFWTTKAFLPA 153
Query: 170 --VNNAGNIVNVSSVNGLRSFPGVLAYCVSKAAVDQFTSCTALELAS---KGVRVNSVNP 224
NN G+IV V+S G S P +LAYC SK A F ELA+ GV+ + P
Sbjct: 154 MTKNNHGHIVTVASAAGHVSVPFLLAYCSSKFAAVGFHKTLTDELAALQITGVKTTCLCP 213
Query: 225 GVTLTNLHKNSGIDQQAYQNFLERSKETHALGRVGNPEEVAKAI 268
T KN + +LG PEEV +
Sbjct: 214 NFVNTGFIKNP----------------STSLGPTLEPEEVVNRL 241
>3tl3_A Short-chain type dehydrogenase/reductase; ssgcid, seattle
structural genomics center for infectious DI
oxidoreductase; 1.85A {Mycobacterium ulcerans}
Length = 257
Score = 130 bits (329), Expect = 1e-36
Identities = 68/312 (21%), Positives = 110/312 (35%), Gaps = 75/312 (24%)
Query: 1 MNFTGKVILVTGASSGIGAATALHLAKLDAKLAITGRNVEQLNK-VSESCQSVSKNKPLV 59
M V +VTG +SG+G AT L A++ + E + + + +
Sbjct: 5 MEIRDAVAVVTGGASGLGLATTKRLLDAGAQVVVLDIRGEDVVADLGDRARFA------- 57
Query: 60 IQADLTSEEDTKRIIDTVVKHYQKLNVLVNNAVTGASSGIGAATALHLAKLDAKLAITGR 119
AD+T E +D L ++VN A G G A +
Sbjct: 58 -AADVTDEAAVASALDLAETM-GTLRIVVNCA------GTGNAIRV-------------- 95
Query: 120 NVEQLNKVSESCQSVSKNKPLVIQADLTSEEDTKRIIDT-----------VVKHYQKLNV 168
+S++ S ++I+D + K
Sbjct: 96 --------------LSRDGVF-------SLAAFRKIVDINLVGSFNVLRLAAERIAKTEP 134
Query: 169 LVNNAGN---IVNVSSVNGLRSFPGVLAYCVSKAAVDQFTSCTALELASKGVRVNSVNPG 225
+ NA I+N +SV G AY SK V T A +LAS +RV ++ PG
Sbjct: 135 VGPNAEERGVIINTASVAAFDGQIGQAAYSASKGGVVGMTLPIARDLASHRIRVMTIAPG 194
Query: 226 VTLTNLHKNSGIDQQAYQNFLERSKETHALGRVGNPEEVAKAIAFLASDDASFTTGEHLT 285
+ T L + + ++A + L + R+GNP+E + + GE +
Sbjct: 195 LFDTPLL--ASLPEEA-RASLGKQVPH--PSRLGNPDEYGALAVHIIENP--MLNGEVIR 247
Query: 286 VDGG-RHAMCPR 296
+DG R M PR
Sbjct: 248 LDGAIR--MAPR 257
>3m1a_A Putative dehydrogenase; short, PSI, MCSG, structural genomics,
midwest center for structural genomics, protein
structure initiative; 2.00A {Streptomyces avermitilis}
Length = 281
Score = 126 bits (320), Expect = 5e-35
Identities = 69/290 (23%), Positives = 109/290 (37%), Gaps = 66/290 (22%)
Query: 1 MNFTGKVILVTGASSGIGAATALHLAKLDAKLAITGRNVEQLNKVSESCQSVSKNKPLVI 60
M+ + KV LVTGASSG G A A + T R E L+ + + ++ I
Sbjct: 1 MSESAKVWLVTGASSGFGRAIAEAAVAAGDTVIGTARRTEALDDLVAA----YPDRAEAI 56
Query: 61 QADLTSEEDTKRIIDTVVKHYQKLNVLVNNAVTGASSGIGAATALHLAKLDAKLAITGRN 120
D+T E + V+ Y +++VLVNNA G A
Sbjct: 57 SLDVTDGERIDVVAADVLARYGRVDVLVNNA------GRTQVGA---------------- 94
Query: 121 VEQLNKVSESCQSVSKNKPLVIQADLTSEEDTKRIIDTVVKHYQKLNVL--------VNN 172
E+ T+E + + + + V + +
Sbjct: 95 FEE-----------------------TTERELRDLFELHV--FGPARLTRALLPQMRERG 129
Query: 173 AGNIVNVSSVNGLRSFPGVLAYCVSKAAVDQFTSCTALELASKGVRVNSVNPGVTLTNLH 232
+G++VN+SS G SF G AY +KAA++Q + A E+A G++V V PG TNL
Sbjct: 130 SGSVVNISSFGGQLSFAGFSAYSATKAALEQLSEGLADEVAPFGIKVLIVEPGAFRTNLF 189
Query: 233 KNSGIDQQ----AYQNFLERSKETHALGR---VGNPEEVAKAIAFLASDD 275
AY + +++ G+P + A AI +
Sbjct: 190 GKGAAYFSEENPAYAEKVGPTRQLVQGSDGSQPGDPAKAAAAIRLALDTE 239
>2yut_A Putative short-chain oxidoreductase; alpha and beta proteins (A/B),
NAD(P)-binding rossmann-fold structural genomics,
NPPSFA; HET: NAP; 2.20A {Thermus thermophilus}
Length = 207
Score = 123 bits (312), Expect = 1e-34
Identities = 39/218 (17%), Positives = 67/218 (30%), Gaps = 67/218 (30%)
Query: 92 VTGASSGIGAATALHLAKLDAKLAITGRNVEQLNKVSESCQSVSKNKPLVIQADLTSEED 151
+TGA+ G+G A A L L ++GR L +++ + + ADL E +
Sbjct: 5 ITGATGGLGGAFARALK--GHDLLLSGRRAGALAELAREVGA------RALPADLADELE 56
Query: 152 TKRIIDTVVKHYQKLNVLVNNAG---------------------N--------------- 175
+++ L++LV+ G +
Sbjct: 57 ----AKALLEEAGPLDLLVHAVGKAGRASVREAGRDLVEEMLAAHLLTAAFVLKHARFQK 112
Query: 176 ---IVNVSSVNGLRSFPGVLAYCVSKAAVDQFTSCTALELASKGVRVNSVNPGVTLTNLH 232
V + PG AY +K A++ + EL +GV + V T L
Sbjct: 113 GARAVFFGAYPRYVQVPGFAAYAAAKGALEAYLEAARKELLREGVHLVLVRLPAVATGLW 172
Query: 233 KNSGIDQQAYQNFLERSKETHALGRVGNPEEVAKAIAF 270
G +PEE A+ +
Sbjct: 173 APLGGPP----------------KGALSPEEAARKVLE 194
Score = 72.2 bits (178), Expect = 2e-15
Identities = 23/105 (21%), Positives = 43/105 (40%), Gaps = 18/105 (17%)
Query: 8 ILVTGASSGIGAATALHLAKLDAKLAITGRNVEQLNKVSESCQSVSKNKPLVIQADLTSE 67
+L+TGA+ G+G A A L L ++GR L +++ + + ADL E
Sbjct: 3 VLITGATGGLGGAFARALK--GHDLLLSGRRAGALAELAREVGA------RALPADLADE 54
Query: 68 EDTKRIIDTVVKHYQKLNVLVNNAVTGASSGIGAATALHLAKLDA 112
+ +++ L++LV+ G ++ A D
Sbjct: 55 LE----AKALLEEAGPLDLLVHAV------GKAGRASVREAGRDL 89
>3u9l_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics,
PSI-biology, NEW YORK structural genomi research
consortium, nysgrc; 2.10A {Sinorhizobium meliloti}
Length = 324
Score = 126 bits (317), Expect = 3e-34
Identities = 59/309 (19%), Positives = 103/309 (33%), Gaps = 86/309 (27%)
Query: 1 MNFTGKVILVTGASSGIGAATALHLAKLDAKLAITGRNVEQLNK-VSESCQSVSKNKP-- 57
M + K+IL+TGASSG G TA LA ++ + R++ N E+ +++
Sbjct: 1 MVMSKKIILITGASSGFGRLTAEALAGAGHRVYASMRDIVGRNASNVEAIAGFARDNDVD 60
Query: 58 -LVIQADLTSEEDTKRIIDTVVKHYQKLNVLVNNAVTGASSGIGAATALHLAKLDAKLAI 116
++ D+ S+ R ID ++ +++VL++NA G
Sbjct: 61 LRTLELDVQSQVSVDRAIDQIIGEDGRIDVLIHNA------GHMVFGP------------ 102
Query: 117 TGRNVEQLNKVSESCQSVSKNKPLVIQADLTSEEDTKRIIDTVVKHYQKLNVL----VNN 172
E + E + D NVL VN
Sbjct: 103 ----AEA-----------------------FTPEQFAELYDI--------NVLSTQRVNR 127
Query: 173 A----------GNIVNVSSVNGLRSF-PGVLAYCVSKAAVDQFTSCTALELASKGVRVNS 221
A G ++ +SS + P + Y +KAA+D A EL+ G+ +
Sbjct: 128 AALPHMRRQKHGLLIWISSSSSAGGTPPYLAPYFAAKAAMDAIAVQYARELSRWGIETSI 187
Query: 222 VNPGVTLTNLHKNSGI------------DQQAYQNFLERSKETHALG--RVGNPEEVAKA 267
+ PG + + + + E K+ A + VA A
Sbjct: 188 IVPGAFTSGTNHFAHSGVPDDHARQAEYEAGPNAGLGEEIKKAFAAIVPPDADVSLVADA 247
Query: 268 IAFLASDDA 276
I + +
Sbjct: 248 IVRVVGTAS 256
>1uay_A Type II 3-hydroxyacyl-COA dehydrogenase; beta oxidation, fatty
acid, structural genomi structural genomics/proteomics
initiative, RSGI; HET: ADN; 1.40A {Thermus thermophilus}
SCOP: c.2.1.2
Length = 242
Score = 122 bits (309), Expect = 6e-34
Identities = 70/294 (23%), Positives = 109/294 (37%), Gaps = 57/294 (19%)
Query: 6 KVILVTGASSGIGAATALHLAKLDAKLAITGRNVEQLNKVSESCQSVSKNKPLVIQADLT 65
+ LVTG +SG+G A AL L ++ + E + + ++ D+T
Sbjct: 3 RSALVTGGASGLGRAAALALKARGYRVVVLDLRREGEDLI-------------YVEGDVT 49
Query: 66 SEEDTKRIIDTVVKHYQKLNVLVNNA-VTGASSGIGAATALHLAKLDAKLAI--TGRNVE 122
EED +R + + L +V+ A V A +G L L + G
Sbjct: 50 REEDVRRAVARAQEEAP-LFAVVSAAGVGLAEKILGKEGPHGLESFRRVLEVNLLG---- 104
Query: 123 QLNKVSESCQSVSKNKPLVIQADLTSEEDTKRIIDTVVKHYQKLNVLVNNAGNIVNVSSV 182
N + + ++ +N P + + +R G IVN +SV
Sbjct: 105 TFNVLRLAAWAMRENPP---------DAEGQR-------------------GVIVNTASV 136
Query: 183 NGLRSFPGVLAYCVSKAAVDQFTSCTALELASKGVRVNSVNPGVTLTNLHKNSGIDQQAY 242
G AY SK V T A ELA G+RV +V PG+ T L + +
Sbjct: 137 AAFEGQIGQAAYAASKGGVVALTLPAARELAGWGIRVVTVAPGLFDTPLLQGLP---EKA 193
Query: 243 QNFLERSKETHALGRVGNPEEVAKAIAFLASDDASFTTGEHLTVDGGRHAMCPR 296
+ L R+G PEE A + + + GE + +DG M PR
Sbjct: 194 KASLAAQVPFP--PRLGRPEEYAALVLHILENP--MLNGEVVRLDGAL-RMAPR 242
>1jtv_A 17 beta-hydroxysteroid dehydrogenase type 1; steroid hormones,
alternative binding mode, oxidoreductase; HET: TES;
1.54A {Homo sapiens} SCOP: c.2.1.2 PDB: 1dht_A* 1equ_A*
1bhs_A* 1i5r_A* 1qyv_A* 1qyw_A* 1qyx_A* 3dey_X* 3dhe_A*
3hb4_X* 3hb5_X* 3klp_X* 3km0_A* 1iol_A* 1fds_A* 1fdt_A*
3klm_X* 1fdw_A* 1fdu_A* 1fdv_A* ...
Length = 327
Score = 119 bits (299), Expect = 1e-31
Identities = 55/297 (18%), Positives = 102/297 (34%), Gaps = 79/297 (26%)
Query: 6 KVILVTGASSGIGAATALHLAKLDAK---LAITGRNVEQLNKVSESCQSVSKNKP--LVI 60
V+L+TG SSGIG A+ LA ++ + T R+++ ++ E+ ++++ +
Sbjct: 3 TVVLITGCSSGIGLHLAVRLASDPSQSFKVYATLRDLKTQGRLWEAARALACPPGSLETL 62
Query: 61 QADLTSEEDTKRIIDTVVKHYQKLNVLVNNAVTGASSGIGAATALHLAKLDAKLAITGRN 120
Q D+ + + V + +++VLV NA G+G
Sbjct: 63 QLDVRDSKSVAAARERVTE--GRVDVLVCNA------GLGLLGP---------------- 98
Query: 121 VEQLNKVSESCQSVSKNKPLVIQADLTSEEDTKRIIDT-------VVKHYQKLNVL---- 169
+E E+ ++D +++ L
Sbjct: 99 LEA-----------------------LGEDAVASVLDVNVVGTVRMLQA-----FLPDMK 130
Query: 170 VNNAGNIVNVSSVNGLRSFPGVLAYCVSKAAVDQFTSCTALELASKGVRVNSVNPGVTLT 229
+G ++ SV GL P YC SK A++ A+ L GV ++ + G T
Sbjct: 131 RRGSGRVLVTGSVGGLMGLPFNDVYCASKFALEGLCESLAVLLLPFGVHLSLIECGPVHT 190
Query: 230 NLHKNSGI---------DQQAYQNFLERSKETHALGR--VGNPEEVAKAIAFLASDD 275
+ D + F + + + R NPEEVA+
Sbjct: 191 AFMEKVLGSPEEVLDRTDIHTFHRFYQYLAHSKQVFREAAQNPEEVAEVFLTALRAP 247
>3d7l_A LIN1944 protein; APC89317, structural genomics, PS protein
structure initiative, midwest center for structural
genomics, MCSG; 2.06A {Listeria innocua}
Length = 202
Score = 112 bits (282), Expect = 3e-30
Identities = 47/290 (16%), Positives = 86/290 (29%), Gaps = 97/290 (33%)
Query: 4 TGKVILVTGASSGIGAATALHLAKLDAKLAITGRNVEQLNKVSESCQSVSKNKPLVIQAD 63
IL+ GAS +G+A L K A++ GR+ + D
Sbjct: 2 NAMKILLIGASGTLGSAVKERLEK-KAEVITAGRHSGD------------------VTVD 42
Query: 64 LTSEEDTKRIIDTVVKHYQKLNVLVNNAVTGASSGIGAATALHLAKLDAKLAITGRNVEQ 123
+T+ + I + + K++ +V+ G + L
Sbjct: 43 ITNIDS----IKKMYEQVGKVDAIVSAT------GSATFSPL------------------ 74
Query: 124 LNKVSESCQSVSKNKPLVIQADLTSEEDTKRIIDT-------VVKHYQKLNVLVNNAGNI 176
+LT E I + +V +N+ G+
Sbjct: 75 --------------------TELT-PEKNAVTISSKLGGQINLVLLGIDS---LNDKGSF 110
Query: 177 VNVSSVNGLRSFPGVLAYCVSKAAVDQFTSCTALELASKGVRVNSVNPGVTLTNLHKNSG 236
+ + + ++ AV F A+E+ +G+R+N+V+P V +
Sbjct: 111 TLTTGIMMEDPIVQGASAAMANGAVTAFAKSAAIEMP-RGIRINTVSPNVLEESW----- 164
Query: 237 IDQQAYQNFLERSKETHALGRVGNPEEVAKAIAFLASDDASFTTGEHLTV 286
+ F E A +VA+A TGE V
Sbjct: 165 ---DKLEPFFEGFLPVPA-------AKVARAFEKSVF---GAQTGESYQV 201
>3o26_A Salutaridine reductase; short chain dehydrogenase/reductases,
oxidoreductase; HET: NDP; 1.91A {Papaver somniferum}
Length = 311
Score = 111 bits (280), Expect = 4e-29
Identities = 55/329 (16%), Positives = 103/329 (31%), Gaps = 88/329 (26%)
Query: 4 TGKVILVTGASSGIGAATALHLAKLDAKLAITGRNVEQLNKVSESCQSVSKNKPLVIQAD 63
+ +VTG + GIG L+ + +T R+V + ++ E ++ + + Q D
Sbjct: 11 KRRCAVVTGGNKGIGFEICKQLSSNGIMVVLTCRDVTKGHEAVEKLKNSNHENVVFHQLD 70
Query: 64 LTSEEDTKR-IIDTVVKHYQKLNVLVNNAVTGASSGIGAATALHLAKLDAKLAITGRNVE 122
+T T + D + H+ KL++LVNNA G + A D
Sbjct: 71 VTDPIATMSSLADFIKTHFGKLDILVNNA--GVAGFSVDADRFKAMISDIGEDSEELVKI 128
Query: 123 QLNKVSESCQSVSKNKPLVIQADLTSEEDTKRIIDTVVKHYQKL------NVLVNNAGNI 176
++ S + E + + + + + ++++ I
Sbjct: 129 YEKPEAQELMS-------------ETYELAEECLKINYNGVKSVTEVLIPLLQLSDSPRI 175
Query: 177 VNVSSVNGLRSF-------------------------------------------PGVLA 193
VNVSS G + A
Sbjct: 176 VNVSSSTGSLKYVSNETALEILGDGDALTEERIDMVVNMLLKDFKENLIETNGWPSFGAA 235
Query: 194 YCVSKAAVDQFTSCTALELASKGVRVNSVNPGVTLTNLHKNSGIDQQAYQNFLERSKETH 253
Y SKA ++ +T A ++ +VN V PG+ T ++ G +
Sbjct: 236 YTTSKACLNAYTRVLANKI--PKFQVNCVCPGLVKTEMNYGIGN----------YT---- 279
Query: 254 ALGRVGNPEEVAKAIAFLASDDASFTTGE 282
EE A+ + +A +G
Sbjct: 280 -------AEEGAEHVVRIALFPDDGPSGF 301
>3qlj_A Short chain dehydrogenase; structural genomics, seattle structural
genomics center for infectious disease, ssgcid,
tuberculosis; 1.80A {Mycobacterium avium}
Length = 322
Score = 104 bits (262), Expect = 2e-26
Identities = 58/257 (22%), Positives = 88/257 (34%), Gaps = 68/257 (26%)
Query: 92 VTGASSGIGAATALHLAKLDAKLAI---TGRNVEQLNKVSESCQSVSKN------KPLVI 142
VTGA GIG A AL A A++ + + QSV + +
Sbjct: 32 VTGAGGGIGRAHALAFAAEGARVVVNDIGVGLDGSPASGGSAAQSVVDEITAAGGEAVAD 91
Query: 143 QADLTSEEDTKRIIDTVVKHYQKLNVLVNNAGN--------------------------- 175
+++ + +I T V+ + L+VLVNNAG
Sbjct: 92 GSNVADWDQAAGLIQTAVETFGGLDVLVNNAGIVRDRMIANTSEEEFDAVIAVHLKGHFA 151
Query: 176 ----------------------IVNVSSVNGLRSFPGVLAYCVSKAAVDQFTSCTALELA 213
I+N SS GL+ G Y +KA + T A E+
Sbjct: 152 TMRHAAAYWRGLSKAGKAVDGRIINTSSGAGLQGSVGQGNYSAAKAGIATLTLVGAAEMG 211
Query: 214 SKGVRVNSVNPGVTLTNLHKNSGIDQQAYQNFLERSKETHALGRVGNPEEVAKAIAFLAS 273
GV VN++ P T + + F E PE V+ + +L S
Sbjct: 212 RYGVTVNAIAPSAR-TRMTETV---------FAEMMATQDQDFDAMAPENVSPLVVWLGS 261
Query: 274 DDASFTTGEHLTVDGGR 290
+A TG+ V+GG+
Sbjct: 262 AEARDVTGKVFEVEGGK 278
Score = 61.2 bits (149), Expect = 6e-11
Identities = 27/98 (27%), Positives = 44/98 (44%), Gaps = 9/98 (9%)
Query: 3 FTGKVILVTGASSGIGAATALHLAKLDAKLAI---TGRNVEQLNKVSESCQSVSKN---- 55
G+V++VTGA GIG A AL A A++ + + QSV
Sbjct: 25 VDGRVVIVTGAGGGIGRAHALAFAAEGARVVVNDIGVGLDGSPASGGSAAQSVVDEITAA 84
Query: 56 --KPLVIQADLTSEEDTKRIIDTVVKHYQKLNVLVNNA 91
+ + +++ + +I T V+ + L+VLVNNA
Sbjct: 85 GGEAVADGSNVADWDQAAGLIQTAVETFGGLDVLVNNA 122
>1wma_A Carbonyl reductase [NADPH] 1; oxidoreductase; HET: AB3 NDP PE5 P33;
1.24A {Homo sapiens} SCOP: c.2.1.2 PDB: 3bhi_A* 3bhj_A*
3bhm_A* 2pfg_A* 1n5d_A* 2hrb_A*
Length = 276
Score = 99.0 bits (247), Expect = 1e-24
Identities = 52/253 (20%), Positives = 88/253 (34%), Gaps = 36/253 (14%)
Query: 4 TGKVILVTGASSGIGAATALHLAKL-DAKLAITGRNVEQLNKVSESCQSVSKNKPLVIQA 62
V LVTG + GIG A L +L + +T R+V + + Q+ P Q
Sbjct: 3 GIHVALVTGGNKGIGLAIVRDLCRLFSGDVVLTARDVTRGQAAVQQLQA-EGLSPRFHQL 61
Query: 63 DLTSEEDTKRIIDTVVKHYQKLNVLVNNA------VTGASSGIGAATAL---HLAKLDA- 112
D+ + + + D + K Y L+VLVNNA I A + D
Sbjct: 62 DIDDLQSIRALRDFLRKEYGGLDVLVNNAGIAFKVADPTPFHIQAEVTMKTNFFGTRDVC 121
Query: 113 -----KLAITGRNVEQLNKVSESCQSVSKNKPLVIQADLTSEEDTKRIIDTVVKHYQKLN 167
+ GR V N S K+ +Q SE T+ + ++ + +
Sbjct: 122 TELLPLIKPQGRVV---NVSSIMSVRALKSCSPELQQKFRSETITEEELVGLMNKFVE-- 176
Query: 168 VLVNNAGNIVNVSSVNGLRSFPGVLAYCVSKAAVDQFTSCTALELASK----GVRVNSVN 223
+ + AY V+K V + A +L+ + + +N+
Sbjct: 177 ----------DTKKGVHQKEGWPSSAYGVTKIGVTVLSRIHARKLSEQRKGDKILLNACC 226
Query: 224 PGVTLTNLHKNSG 236
PG T++
Sbjct: 227 PGWVRTDMAGPKA 239
>1gz6_A Estradiol 17 beta-dehydrogenase 4; 17BETA-HSD4, MFE-2,
beta-oxidation, peroxisome, SDR, steroid biosynthesis,
oxidoreductase, NADP; HET: NAI; 2.38A {Rattus
norvegicus} SCOP: c.2.1.2 PDB: 1zbq_A*
Length = 319
Score = 93.2 bits (232), Expect = 4e-22
Identities = 44/253 (17%), Positives = 84/253 (33%), Gaps = 77/253 (30%)
Query: 92 VTGASSGIGAATALHLAKLDAKLAI--TGRNVEQLNKVSESCQSVSKNKPLVIQ------ 143
VTGA G+G A AL A+ A + + G + + + K S + V + I+
Sbjct: 14 VTGAGGGLGRAYALAFAERGALVVVNDLGGDFKGVGKGSSAADKVVEE----IRRRGGKA 69
Query: 144 -ADLTSEEDTKRIIDTVVKHYQKLNVLVNNAGN--------------------------- 175
A+ S E ++++ T + + +++V+VNNAG
Sbjct: 70 VANYDSVEAGEKLVKTALDTFGRIDVVVNNAGILRDRSFSRISDEDWDIIQRVHLRGSFQ 129
Query: 176 ----------------IVNVSSVNGLRSFPGVLAYCVSKAAVDQFTSCTALELASKGVRV 219
I+ +S +G+ G Y +K + + +E +
Sbjct: 130 VTRAAWDHMKKQNYGRIIMTASASGIYGNFGQANYSAAKLGLLGLANTLVIEGRKNNIHC 189
Query: 220 NSVNPGVT--LTNLHKNSGIDQQAYQNFLERSKETHALGRVGNPEEVAKAIAFLASDDAS 277
N++ P +T + + + + PE VA + +L +
Sbjct: 190 NTIAPNAGSRMT----ETVMPEDLVEAL--------------KPEYVAPLVLWLCHESCE 231
Query: 278 FTTGEHLTVDGGR 290
G V G
Sbjct: 232 E-NGGLFEVGAGW 243
Score = 62.8 bits (153), Expect = 2e-11
Identities = 29/100 (29%), Positives = 53/100 (53%), Gaps = 13/100 (13%)
Query: 1 MNFTGKVILVTGASSGIGAATALHLAKLDAKLAI--TGRNVEQLNKVSESCQSVSKNKPL 58
+ F G+V+LVTGA G+G A AL A+ A + + G + + + K S + V +
Sbjct: 5 LRFDGRVVLVTGAGGGLGRAYALAFAERGALVVVNDLGGDFKGVGKGSSAADKVVEE--- 61
Query: 59 VIQ-------ADLTSEEDTKRIIDTVVKHYQKLNVLVNNA 91
I+ A+ S E ++++ T + + +++V+VNNA
Sbjct: 62 -IRRRGGKAVANYDSVEAGEKLVKTALDTFGRIDVVVNNA 100
>2et6_A (3R)-hydroxyacyl-COA dehydrogenase; MFE-2, beta-oxidation,
peroxisome, SDR, oxido; 2.22A {Candida tropicalis}
Length = 604
Score = 95.2 bits (237), Expect = 4e-22
Identities = 59/253 (23%), Positives = 93/253 (36%), Gaps = 73/253 (28%)
Query: 92 VTGASSGIGAATALHLAKLDAKLAI--TGRNVEQLNKVSESCQSVSKNKPLVIQ------ 143
+TGA G+G +L AKL AK+ + G + S++ V I
Sbjct: 13 ITGAGGGLGKYYSLEFAKLGAKVVVNDLGGALNGQGGNSKAADVVVDE----IVKNGGVA 68
Query: 144 -ADLTSEEDTKRIIDTVVKHYQKLNVLVNNAGN--------------------------- 175
AD + D +I++T VK++ ++V++NNAG
Sbjct: 69 VADYNNVLDGDKIVETAVKNFGTVHVIINNAGILRDASMKKMTEKDYKLVIDVHLNGAFA 128
Query: 176 ----------------IVNVSSVNGLRSFPGVLAYCVSKAAVDQFTSCTALELASKGVRV 219
IVN SS GL G Y +K+A+ F A E A ++
Sbjct: 129 VTKAAWPYFQKQKYGRIVNTSSPAGLYGNFGQANYASAKSALLGFAETLAKEGAKYNIKA 188
Query: 220 NSVNPGVTLTNLHKNSGIDQQAYQNFLERSKETHALGRVGNPEEVAKAIAFLASDDASFT 279
N++ P A E L ++G PE+VA + +L+S +
Sbjct: 189 NAIAPL---------------ARSRMTESIMPPPMLEKLG-PEKVAPLVLYLSSAENEL- 231
Query: 280 TGEHLTVDGGRHA 292
TG+ V G +A
Sbjct: 232 TGQFFEVAAGFYA 244
Score = 83.2 bits (206), Expect = 5e-18
Identities = 52/245 (21%), Positives = 90/245 (36%), Gaps = 69/245 (28%)
Query: 91 AVTGASSGIGAATALHLAKLDAKLAITGRNVEQLNKVSESCQSVSKN--KPLVIQADLTS 148
+TGA +G+G A AK AK+ V +++ + + Q D+
Sbjct: 326 LITGAGAGLGKEYAKWFAKYGAKVV-----VNDFKDATKTVDEIKAAGGEAWPDQHDVA- 379
Query: 149 EEDTKRIIDTVVKHYQKLNVLVNNAGN--------------------------------- 175
+D++ II V+ Y +++LVNNAG
Sbjct: 380 -KDSEAIIKNVIDKYGTIDILVNNAGILRDRSFAKMSKQEWDSVQQVHLIGTFNLSRLAW 438
Query: 176 ----------IVNVSSVNGLRSFPGVLAYCVSKAAVDQFTSCTALELASKGVRVNSVNPG 225
I+N++S +G+ G Y SKA + + A+E A ++VN V P
Sbjct: 439 PYFVEKQFGRIINITSTSGIYGNFGQANYSSSKAGILGLSKTMAIEGAKNNIKVNIVAP- 497
Query: 226 VTLTNLHKNSGIDQQAYQNFLERSKETHALGRVGNPEEVAKAIAFLASDDASFTTGEHLT 285
T + + +Q + + ++VA + +L +DD TGE
Sbjct: 498 HAETAMTLSIMREQ---------------DKNLYHADQVAPLLVYLGTDDVPV-TGETFE 541
Query: 286 VDGGR 290
+ GG
Sbjct: 542 IGGGW 546
Score = 62.8 bits (153), Expect = 3e-11
Identities = 29/100 (29%), Positives = 51/100 (51%), Gaps = 13/100 (13%)
Query: 1 MNFTGKVILVTGASSGIGAATALHLAKLDAKLAI--TGRNVEQLNKVSESCQSVSKNKPL 58
++F KV+++TGA G+G +L AKL AK+ + G + S++ V
Sbjct: 4 VDFKDKVVIITGAGGGLGKYYSLEFAKLGAKVVVNDLGGALNGQGGNSKAADVVVDE--- 60
Query: 59 VIQ-------ADLTSEEDTKRIIDTVVKHYQKLNVLVNNA 91
I AD + D +I++T VK++ ++V++NNA
Sbjct: 61 -IVKNGGVAVADYNNVLDGDKIVETAVKNFGTVHVIINNA 99
Score = 43.1 bits (102), Expect = 6e-05
Identities = 26/93 (27%), Positives = 46/93 (49%), Gaps = 9/93 (9%)
Query: 1 MNFTGKVILVTGASSGIGAATALHLAKLDAKLAITGRNVEQLNKVSESCQSVSKN--KPL 58
++ KV+L+TGA +G+G A AK AK+ V +++ + +
Sbjct: 318 VSLKDKVVLITGAGAGLGKEYAKWFAKYGAKVV-----VNDFKDATKTVDEIKAAGGEAW 372
Query: 59 VIQADLTSEEDTKRIIDTVVKHYQKLNVLVNNA 91
Q D+ +D++ II V+ Y +++LVNNA
Sbjct: 373 PDQHDVA--KDSEAIIKNVIDKYGTIDILVNNA 403
>1yo6_A Putative carbonyl reductase sniffer; tyrosine-dependent
oxidoreductase (SDR family), structural genomics, PSI;
2.60A {Caenorhabditis elegans} SCOP: c.2.1.2
Length = 250
Score = 89.3 bits (222), Expect = 3e-21
Identities = 54/239 (22%), Positives = 95/239 (39%), Gaps = 42/239 (17%)
Query: 4 TGKVILVTGASSGIGAATALHLAKLDAKLAI--TGRNVEQLNKVSESCQSVSKNKPLVIQ 61
+ ++VTGA+ GIG L K I T R+VE+ ++ +S+ ++ V+
Sbjct: 2 SPGSVVVTGANRGIGLGLVQQLVKDKNIRHIIATARDVEKATEL----KSIKDSRVHVLP 57
Query: 62 ADLTSEEDTKRIIDTVVKHY--QKLNVLVNNAVTGASSGIGAATALHLAKLDAKLAITGR 119
+T ++ + V + L++L+NNA G G T + A + +L +
Sbjct: 58 LTVTCDKSLDTFVSKVGEIVGSDGLSLLINNA--GVLLSYGTNTEPNRAVIAEQLDV--- 112
Query: 120 NVEQLNKVSESCQSVSKNKPLVIQADLTSEEDTKRIIDTVVKHYQKLNVLVNNAGNIVNV 179
N + +++ PL+ A D + ++ +
Sbjct: 113 NTTSVVLLTQKL------LPLLKNAASKESGDQLS----------------VSRAAVITI 150
Query: 180 SSVNG-------LRSFPGVLAYCVSKAAVDQFTSCTALELASKGVRVNSVNPGVTLTNL 231
SS G + VLAY +SKAA++ F A++L V V + PG TNL
Sbjct: 151 SSGLGSITDNTSGSAQFPVLAYRMSKAAINMFGRTLAVDLKDDNVLVVNFCPGWVQTNL 209
>1sny_A Sniffer CG10964-PA; alpha and beta protein, rossmann fold,
dinucleotide binding oxidoreductase; HET: NAP; 1.75A
{Drosophila melanogaster} SCOP: c.2.1.2
Length = 267
Score = 87.8 bits (218), Expect = 2e-20
Identities = 53/238 (22%), Positives = 100/238 (42%), Gaps = 45/238 (18%)
Query: 6 KVILVTGASSGIGAATALHLAKLDAKLAI---TGRNVEQ---LNKVSESCQSVSKNKPLV 59
IL+TG + G+G L L T RN EQ L ++++ ++ +
Sbjct: 22 NSILITGCNRGLGLGLVKALLNLPQPPQHLFTTCRNREQAKELEDLAKNHSNIH-----I 76
Query: 60 IQADLTSEEDTKRIIDTV--VKHYQKLNVLVNNA-VTGASSGIGAATALHLAKLDAKLAI 116
++ DL + + +++ + V Q LNVL NNA + S+ I A + +L L
Sbjct: 77 LEIDLRNFDAYDKLVADIEGVTKDQGLNVLFNNAGIAPKSARITAVRS---QELLDTLQT 133
Query: 117 TGRNVEQLNKVSESCQSVSKNKPLVIQADLTSEEDTKRIIDTVVKHYQKLNVLVNNAGNI 176
N ++++C PL+ +A +E + I
Sbjct: 134 ---NTVVPIMLAKACL------PLLKKAAKANESQP----------------MGVGRAAI 168
Query: 177 VNVSSVNG---LRSFPGVLAYCVSKAAVDQFTSCTALELASKGVRVNSVNPGVTLTNL 231
+N+SS+ G + G+ AY SK+A++ T +++L + + S++PG T++
Sbjct: 169 INMSSILGSIQGNTDGGMYAYRTSKSALNAATKSLSVDLYPQRIMCVSLHPGWVKTDM 226
>4alk_A ENR, enoyl-[acyl-carrier-protein] reductase [NADPH];
oxidoreductase, short-chain dehydrogenase/reductase
superfam fatty acid biosynthesis; HET: NAP E9P GLU;
1.90A {Staphylococcus aureus} PDB: 4alj_A* 4ali_A*
4alm_A 4aln_A 3gr6_A* 3gns_A* 3gnt_A 4all_A*
Length = 282
Score = 83.1 bits (206), Expect = 1e-18
Identities = 66/307 (21%), Positives = 116/307 (37%), Gaps = 67/307 (21%)
Query: 1 MNFTGKVILVTGASSG--IGAATALHLAKLDAKLAITGRNVEQLNKVSESCQSVSKNKPL 58
+N K ++ G ++ I A L +L AKL T R ++ + + +++ +
Sbjct: 28 VNLENKTYVIMGIANKRSIAFGVAKVLDQLGAKLVFTYRKERSRKELEKLLEQLNQPEAH 87
Query: 59 VIQADLTSEEDTKRIIDTVVKHYQKLNVLVNNAVTGASSGIGAATALHLAKLDAKLAITG 118
+ Q D+ S+E+ + + K ++ + H + G
Sbjct: 88 LYQIDVQSDEEVINGFEQIGKDVGNIDGVY-----------------HSIAFANMEDLRG 130
Query: 119 RNVEQLNKVSESCQSVSKNKPLVIQADLTSEEDTKRIIDT-------VVKHYQKLNVLVN 171
R E TS E D V +KL +
Sbjct: 131 RFSE------------------------TSREGFLLAQDISSYSLTIVAHEAKKL---MP 163
Query: 172 NAGNIVNVSSVNGLRSFPGVLAY---CVSKAAVDQFTSCTALELASKGVRVNSVNPG--V 226
G+IV + + G + Y V+KA+++ AL+L +RVN+++ G
Sbjct: 164 EGGSIVATTYLGGEFAVQN---YNVMGVAKASLEANVKYLALDLGPDNIRVNAISAGPIR 220
Query: 227 TLTNLHKNSGIDQQAYQNFLERSKETHALGRVGNPEEVAKAIAFLASDDASFTTGEHLTV 286
TL+ G+ + L+ +E L R + EV K A+L SD +S TGE++ V
Sbjct: 221 TLS----AKGVGG--FNTILKEIEERAPLKRNVDQVEVGKTAAYLLSDLSSGVTGENIHV 274
Query: 287 DGGRHAM 293
D G HA+
Sbjct: 275 DSGFHAI 281
>3nrc_A Enoyl-[acyl-carrier-protein] reductase (NADH); rossmann fold, NADH
BI oxidoreductase; HET: NAD TCL; 2.10A {Francisella
tularensis subsp} PDB: 2jjy_A*
Length = 280
Score = 81.9 bits (203), Expect = 2e-18
Identities = 70/308 (22%), Positives = 122/308 (39%), Gaps = 69/308 (22%)
Query: 1 MNF-TGKVILVTGASSG--IGAATALHLAKLDAKLAITGRNVEQLNKVSESCQSVSKNKP 57
M F GK IL+TG S I A + + A+LA T + ++V + C N
Sbjct: 21 MGFLAGKKILITGLLSNKSIAYGIAKAMHREGAELAFTYVG-QFKDRVEKLCAEF--NPA 77
Query: 58 LVIQADLTSEEDTKRIIDTVVKHYQKLNVLVNNAVTGASSGIGAATALHLAKLDAKLAIT 117
V+ D+ S+++ K + + K + L+ +V+ I A + +
Sbjct: 78 AVLPCDVISDQEIKDLFVELGKVWDGLDAIVH--------SIAFAP---------RDQLE 120
Query: 118 GRNVEQLNKVSESCQSVSKNKPLVIQADLTSEEDTKRIIDT-------VVKHYQKLNVLV 170
G + D + E D + K + + +
Sbjct: 121 GNFI-----------------------DCVTREGFSIAHDISAYSFAALAKEGRSM--MK 155
Query: 171 NNAGNIVNVSSVNGLRSFPGVLAY---CVSKAAVDQFTSCTALELASKGVRVNSVNPG-- 225
N ++V ++ + ++ P Y V+KA+++ TAL L G++VN+V+ G
Sbjct: 156 NRNASMVALTYIGAEKAMPS---YNTMGVAKASLEATVRYTALALGEDGIKVNAVSAGPI 212
Query: 226 VTLTNLHKNSGIDQQAYQNFLERSKETHALGRVGNPEEVAKAIAFLASDDASFTTGEHLT 285
TL SGI ++ L+ + L + + EV +AFL SD A+ TGE +
Sbjct: 213 KTLAA----SGISN--FKKMLDYNAMVSPLKKNVDIMEVGNTVAFLCSDMATGITGEVVH 266
Query: 286 VDGGRHAM 293
VD G H +
Sbjct: 267 VDAGYHCV 274
>3oml_A GH14720P, peroxisomal multifunctional enzyme type 2, CG3415;
rossmann fold, hot-DOG fold, hydratase 2 motif,
peroxisomes, oxidoreductase; 2.15A {Drosophila
melanogaster}
Length = 613
Score = 83.3 bits (206), Expect = 4e-18
Identities = 46/253 (18%), Positives = 83/253 (32%), Gaps = 73/253 (28%)
Query: 92 VTGASSGIGAATALHLAKLDAKLAI--TGRNVEQLNKVSESCQSVSKNKPLVIQ------ 143
VTGA +G+G AL A+ AK+ + G + V I+
Sbjct: 24 VTGAGAGLGREYALLFAERGAKVVVNDLGGTHSGDGASQRAADIVVDE----IRKAGGEA 79
Query: 144 -ADLTSEEDTKRIIDTVVKHYQKLNVLVNNAGN--------------------------- 175
AD S D ++I+T +K + ++++LVNNAG
Sbjct: 80 VADYNSVIDGAKVIETAIKAFGRVDILVNNAGILRDRSLVKTSEQDWNLVNDVHLKGSFK 139
Query: 176 ----------------IVNVSSVNGLRSFPGVLAYCVSKAAVDQFTSCTALELASKGVRV 219
I+ SS +G+ G + Y +K + + A+E A V
Sbjct: 140 CTQAAFPYMKKQNYGRIIMTSSNSGIYGNFGQVNYTAAKMGLIGLANTVAIEGARNNVLC 199
Query: 220 NSVNPGVTLTNLHKNSGIDQQAYQNFLERSKETHALGRVGNPEEVAKAIAFLASDDASFT 279
N + P + + + + + P+ +A +A+L +
Sbjct: 200 NVIVP-TAASRMTEGI-LPDILFNEL--------------KPKLIAPVVAYLCHESCE-D 242
Query: 280 TGEHLTVDGGRHA 292
G ++ G
Sbjct: 243 NGSYIESAAGWAT 255
Score = 59.8 bits (145), Expect = 2e-10
Identities = 28/100 (28%), Positives = 48/100 (48%), Gaps = 13/100 (13%)
Query: 1 MNFTGKVILVTGASSGIGAATALHLAKLDAKLAI--TGRNVEQLNKVSESCQSVSKNKPL 58
+ + G+V +VTGA +G+G AL A+ AK+ + G + V
Sbjct: 15 LRYDGRVAVVTGAGAGLGREYALLFAERGAKVVVNDLGGTHSGDGASQRAADIVVDE--- 71
Query: 59 VIQ-------ADLTSEEDTKRIIDTVVKHYQKLNVLVNNA 91
I+ AD S D ++I+T +K + ++++LVNNA
Sbjct: 72 -IRKAGGEAVADYNSVIDGAKVIETAIKAFGRVDILVNNA 110
>3oig_A Enoyl-[acyl-carrier-protein] reductase [NADH]; fatty acid
synthesis, rossmann-like fold, enoyl-ACP reductas
binding; HET: NAD IMJ; 1.25A {Bacillus subtilis} PDB:
3oif_A* 2qio_A* 3oje_A 3ojf_A*
Length = 266
Score = 79.5 bits (197), Expect = 1e-17
Identities = 64/307 (20%), Positives = 115/307 (37%), Gaps = 67/307 (21%)
Query: 1 MNFTGKVILVTGASSG--IGAATALHLAKLDAKLAITGRNVEQLNKVSESCQSVSKNKPL 58
+ G+ I+V G ++ I A L + A+L T V E ++ +N +
Sbjct: 3 FSLEGRNIVVMGVANKRSIAWGIARSLHEAGARLIFTYAGERLEKSVHELAGTLDRNDSI 62
Query: 59 VIQADLTSEEDTKRIIDTVVKHYQKLNVLVNNAVTGASSGIGAATALHLAKLDAKLAITG 118
++ D+T++ + + ++ + ++ + H K + G
Sbjct: 63 ILPCDVTNDAEIETCFASIKEQVGVIHGIA-----------------HCIAFANKEELVG 105
Query: 119 RNVEQLNKVSESCQSVSKNKPLVIQADLTSEEDTKRIIDT-------VVKHYQKLNVLVN 171
+ T+ + + VVK + + +
Sbjct: 106 EYLN------------------------TNRDGFLLAHNISSYSLTAVVKAARPM---MT 138
Query: 172 NAGNIVNVSSVNGLRSFPGVLAY---CVSKAAVDQFTSCTALELASKGVRVNSVNPG--V 226
G+IV ++ + G P Y V+KA++D A +L + +RVNS++ G
Sbjct: 139 EGGSIVTLTYLGGELVMPN---YNVMGVAKASLDASVKYLAADLGKENIRVNSISAGPIR 195
Query: 227 TLTNLHKNSGIDQQAYQNFLERSKETHALGRVGNPEEVAKAIAFLASDDASFTTGEHLTV 286
TL+ GI + + L+ +E L R PEEV AFL SD + TGE+L V
Sbjct: 196 TLS----AKGISD--FNSILKDIEERAPLRRTTTPEEVGDTAAFLFSDMSRGITGENLHV 249
Query: 287 DGGRHAM 293
D G H
Sbjct: 250 DSGFHIT 256
>3rd5_A Mypaa.01249.C; ssgcid, structural genomics, seattle structural
genomics CEN infectious disease, oxidoreductase; HET:
EPE; 1.50A {Mycobacterium paratuberculosis}
Length = 291
Score = 79.6 bits (197), Expect = 2e-17
Identities = 51/259 (19%), Positives = 81/259 (31%), Gaps = 76/259 (29%)
Query: 92 VTGASSGIGAATALHLAKLDAKLAITGRNVEQLNKVSESCQSVSKNKPLVIQADLTSEED 151
+TGA+SG+GA TA LA+ A + + R+ + + + + V + DL
Sbjct: 21 ITGANSGLGAVTARELARRGATVIMAVRDTRKGEAAARTM----AGQVEVRELDLQDLSS 76
Query: 152 TKRIIDTVVKHYQKLNVLVNNAG-------------------N----------------- 175
+ +VL+NNAG N
Sbjct: 77 ----VRRFADGVSGADVLINNAGIMAVPYALTVDGFESQIGTNHLGHFALTNLLLPRLTD 132
Query: 176 -IVNVSSVN-------------GLRSFPGVLAYCVSKAAVDQFTSCTALELASK------ 215
+V VSS+ R + LAY SK A FT EL +
Sbjct: 133 RVVTVSSMAHWPGRINLEDLNWRSRRYSPWLAYSQSKLANLLFT----SELQRRLTAAGS 188
Query: 216 GVRVNSVNPGVTLTNLHKNSGIDQQAYQNFLERSKETHALGRVGNPEEVAKAIAFLASDD 275
+R + +PG + TNL SG + + + + A+ + AS D
Sbjct: 189 PLRALAAHPGYSHTNLQGASG------RKLGDALMSAATRVVATDADFGARQTLYAASQD 242
Query: 276 ASFTTGEHLTVDGGRHAMC 294
+ G
Sbjct: 243 L--PGDSFVGPRFGYLGRT 259
Score = 65.7 bits (161), Expect = 2e-12
Identities = 21/88 (23%), Positives = 39/88 (44%), Gaps = 8/88 (9%)
Query: 4 TGKVILVTGASSGIGAATALHLAKLDAKLAITGRNVEQLNKVSESCQSVSKNKPLVIQAD 63
+ +++TGA+SG+GA TA LA+ A + + R+ + + + + V + D
Sbjct: 15 AQRTVVITGANSGLGAVTARELARRGATVIMAVRDTRKGEAAARTM----AGQVEVRELD 70
Query: 64 LTSEEDTKRIIDTVVKHYQKLNVLVNNA 91
L + +VL+NNA
Sbjct: 71 LQDLSS----VRRFADGVSGADVLINNA 94
>2wyu_A Enoyl-[acyl carrier protein] reductase; oxidoreductase, fatty acid
biosynthesis, oxidation reduction; 1.50A {Thermus
thermophilus} PDB: 1ulu_A 2wyv_A* 2wyw_A* 2yw9_A*
Length = 261
Score = 77.6 bits (192), Expect = 7e-17
Identities = 69/307 (22%), Positives = 119/307 (38%), Gaps = 69/307 (22%)
Query: 1 MNFTGKVILVTGASSG--IGAATALHLAKLDAKLAITGRNVEQLNKVSESCQSVSKNKPL 58
++ +GK LV G ++ +G A A L + A++A++ + + + +++ L
Sbjct: 4 VDLSGKKALVMGVTNQRSLGFAIAAKLKEAGAEVALSYQAERLRPEAEKLAEAL--GGAL 61
Query: 59 VIQADLTSEEDTKRIIDTVVKHYQKLNVLVNNAVTGASSGIGAATALHLAKLDAKLAITG 118
+ +AD+T +E+ + V + + L+ LV H + A+ G
Sbjct: 62 LFRADVTQDEELDALFAGVKEAFGGLDYLV-----------------HAIAFAPREAMEG 104
Query: 119 RNVEQLNKVSESCQSVSKNKPLVIQADLTSEEDTKRIIDT-------VVKHYQKLNVLVN 171
R ++ T +D ++ V + + L +
Sbjct: 105 RYID------------------------TRRQDWLLALEVSAYSLVAVARRAEPL---LR 137
Query: 172 NAGNIVNVSSVNGLRSFPGVLAYCV---SKAAVDQFTSCTALELASKGVRVNSVNPG--V 226
G IV ++ + P Y V +KAA++ A EL KGVRVN+++ G
Sbjct: 138 EGGGIVTLTYYASEKVVPK---YNVMAIAKAALEASVRYLAYELGPKGVRVNAISAGPVR 194
Query: 227 TLTNLHKNSGIDQQAYQNFLERSKETHALGRVGNPEEVAKAIAFLASDDASFTTGEHLTV 286
T+ I + +R +T L R EEV FL S AS TGE + V
Sbjct: 195 TVA----ARSIPG--FTKMYDRVAQTAPLRRNITQEEVGNLGLFLLSPLASGITGEVVYV 248
Query: 287 DGGRHAM 293
D G H M
Sbjct: 249 DAGYHIM 255
>3ek2_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid,
oxidoreductase, structural genomics; 1.90A {Burkholderia
pseudomallei 1710B}
Length = 271
Score = 76.9 bits (190), Expect = 1e-16
Identities = 71/308 (23%), Positives = 117/308 (37%), Gaps = 69/308 (22%)
Query: 1 MNF-TGKVILVTGASSG--IGAATALHLAKLDAKLAITGRNVEQLNKVSESCQSVSKNKP 57
M F GK IL+TG S I A + A+LA T ++++E
Sbjct: 9 MGFLDGKRILLTGLLSNRSIAYGIAKACKREGAELAFTYVGDRFKDRITEFAAEF--GSE 66
Query: 58 LVIQADLTSEEDTKRIIDTVVKHYQKLNVLVNNAVTGASSGIGAATALHLAKLDAKLAIT 117
LV D+ + + ++ H+ L+ LV H + AI
Sbjct: 67 LVFPCDVADDAQIDALFASLKTHWDSLDGLV-----------------HSIGFAPREAIA 109
Query: 118 GRNVEQLNKVSESCQSVSKNKPLVIQADLTSEEDTKRIIDT-------VVKHYQKLNVLV 170
G + D + E+ + D + K + +
Sbjct: 110 GDFL-----------------------DGLTRENFRIAHDISAYSFPALAKAALPM---L 143
Query: 171 NNAGNIVNVSSVNGLRSFPGVLAY---CVSKAAVDQFTSCTALELASKGVRVNSVNPG-- 225
++ +++ +S + R+ P Y ++KAA++ A+ L +KGVRVN+++ G
Sbjct: 144 SDDASLLTLSYLGAERAIPN---YNTMGLAKAALEASVRYLAVSLGAKGVRVNAISAGPI 200
Query: 226 VTLTNLHKNSGIDQQAYQNFLERSKETHALGRVGNPEEVAKAIAFLASDDASFTTGEHLT 285
TL SGI + L+ + L R E+V A AFL SD AS T E +
Sbjct: 201 KTLAA----SGIKS--FGKILDFVESNSPLKRNVTIEQVGNAGAFLLSDLASGVTAEVMH 254
Query: 286 VDGGRHAM 293
VD G +A+
Sbjct: 255 VDSGFNAV 262
>2p91_A Enoyl-[acyl-carrier-protein] reductase [NADH]; NADH-dependent
enoyl-ACP reductase, FABI, aquifex A VF5, structural
genomics, PSI; 2.00A {Aquifex aeolicus}
Length = 285
Score = 75.0 bits (185), Expect = 9e-16
Identities = 66/314 (21%), Positives = 115/314 (36%), Gaps = 81/314 (25%)
Query: 1 MNF-TGKVILVTGASSG--IGAATALHLAKLDAKLAIT------GRNVEQLNKVSESCQS 51
M GK L+TG ++ I A + A+LA T + V ++ ++ S
Sbjct: 16 MGLLEGKRALITGVANERSIAYGIAKSFHREGAQLAFTYATPKLEKRVREI---AKGFGS 72
Query: 52 VSKNKPLVIQADLTSEEDTKRIIDTVVKHYQKLNVLVNNAVTGASSGIGAATALHLAKLD 111
LV++ D++ +ED K + + +++ L+++V H
Sbjct: 73 -----DLVVKCDVSLDEDIKNLKKFLEENWGSLDIIV-----------------HSIAYA 110
Query: 112 AKLAITGRNVEQLNKVSESCQSVSKNKPLVIQADLTSEEDTKRIIDT-------VVKHYQ 164
K G ++ TS E K +D + +
Sbjct: 111 PKEEFKGGVID------------------------TSREGFKIAMDISVYSLIALTRELL 146
Query: 165 KLNVLVNNAGNIVNVSSVNGLRSFPGVLAY---CVSKAAVDQFTSCTALELASKGVRVNS 221
L + G IV +S + P Y ++KAA++ A ++A G R+N+
Sbjct: 147 PL--MEGRNGAIVTLSYYGAEKVVPH---YNVMGIAKAALESTVRYLAYDIAKHGHRINA 201
Query: 222 VNPG--VTLTNLHKNSGIDQQAYQNFLERSKETHALGRVGNPEEVAKAIAFLASDDASFT 279
++ G TL I + +E + + + G+ E+V FL SD A
Sbjct: 202 ISAGPVKTLAA----YSITG--FHLLMEHTTKVNPFGKPITIEDVGDTAVFLCSDWARAI 255
Query: 280 TGEHLTVDGGRHAM 293
TGE + VD G H M
Sbjct: 256 TGEVVHVDNGYHIM 269
>1qsg_A Enoyl-[acyl-carrier-protein] reductase; enoyl reductase,
oxidoreductase; HET: GLC NAD TCL; 1.75A {Escherichia
coli} SCOP: c.2.1.2 PDB: 1c14_A* 1i2z_A* 1i30_A* 1lx6_A*
1lxc_A* 1mfp_A* 2fhs_A 1qg6_A* 1dfg_A* 1dfh_A* 1d8a_A*
1dfi_A* 3pje_A* 3pjd_A* 3pjf_A*
Length = 265
Score = 71.8 bits (177), Expect = 8e-15
Identities = 52/249 (20%), Positives = 92/249 (36%), Gaps = 68/249 (27%)
Query: 99 IGAATALHLAKLDAKLAIT------GRNVEQLNKVSESCQSVSKNKPLVIQADLTSEEDT 152
I A + + A+LA T VE+ + S +V+Q D+ +
Sbjct: 23 IAYGIAQAMHREGAELAFTYQNDKLKGRVEEF---AAQLGS-----DIVLQCDVAEDASI 74
Query: 153 KRIIDTVVKHYQKLNVLVNN---------AGNIVNVSSVNGLR--------SFPGV---- 191
+ + K + K + V++ G+ VN + G + SF +
Sbjct: 75 DTMFAELGKVWPKFDGFVHSIGFAPGDQLDGDYVNAVTREGFKIAHDISSYSFVAMAKAC 134
Query: 192 ------------LAYC-------------VSKAAVDQFTSCTALELASKGVRVNSVNPG- 225
L+Y ++KA+++ A + +GVRVN+++ G
Sbjct: 135 RSMLNPGSALLTLSYLGAERAIPNYNVMGLAKASLEANVRYMANAMGPEGVRVNAISAGP 194
Query: 226 -VTLTNLHKNSGIDQQAYQNFLERSKETHALGRVGNPEEVAKAIAFLASDDASFTTGEHL 284
TL SGI ++ L + + R E+V + AFL SD ++ +GE +
Sbjct: 195 IRTLAA----SGIKD--FRKMLAHCEAVTPIRRTVTIEDVGNSAAFLCSDLSAGISGEVV 248
Query: 285 TVDGGRHAM 293
VDGG
Sbjct: 249 HVDGGFSIA 257
>2pd4_A Enoyl-[acyl-carrier-protein] reductase [NADH]; antibacterial
target, type II fatty acid biosynthesis,
enoyl-ACP-reductase, FABI; HET: NAD DCN; 2.30A
{Helicobacter pylori} SCOP: c.2.1.2 PDB: 2pd3_A*
Length = 275
Score = 71.1 bits (175), Expect = 2e-14
Identities = 55/242 (22%), Positives = 93/242 (38%), Gaps = 55/242 (22%)
Query: 99 IGAATALHLAKLDAKLAITGRNVEQLNKVSESCQSVSKNKPLVIQADLTSEEDTKRIIDT 158
I A A LA T N +V Q + N P V + D++ EE K + ++
Sbjct: 20 IAYGIAQSCFNQGATLAFTYLNESLEKRVRPIAQEL--NSPYVYELDVSKEEHFKSLYNS 77
Query: 159 VVKHYQKLNVLVNN---------AGNIVNVSSVNGLR-------SFPGV----------- 191
V K L+ +V++ G+++ S S +
Sbjct: 78 VKKDLGSLDFIVHSVAFAPKEALEGSLLETSKSAFNTAMEISVYSLIELTNTLKPLLNNG 137
Query: 192 -----LAYC-------------VSKAAVDQFTSCTALELASKGVRVNSVNPG--VTLTNL 231
L+Y ++KAA++ A++L +RVN+++ G TL +
Sbjct: 138 ASVLTLSYLGSTKYMAHYNVMGLAKAALESAVRYLAVDLGKHHIRVNALSAGPIRTLAS- 196
Query: 232 HKNSGIDQQAYQNFLERSKETHALGRVGNPEEVAKAIAFLASDDASFTTGEHLTVDGGRH 291
SGI ++ L+ ++ L + + EEV A +L S +S +GE VD G H
Sbjct: 197 ---SGIAD--FRMILKWNEINAPLRKNVSLEEVGNAGMYLLSSLSSGVSGEVHFVDAGYH 251
Query: 292 AM 293
M
Sbjct: 252 VM 253
>2h7i_A Enoyl-[acyl-carrier-protein] reductase [NADH]; oxidoreductase,
INHA, enoyl acyl carrier reductase, pyrrolid
carboxamide; HET: NAD 566; 1.62A {Mycobacterium
tuberculosis} SCOP: c.2.1.2 PDB: 1p44_A* 1p45_A* 2b35_A*
2b36_A* 2b37_A* 2aq8_A* 2h7l_A* 2h7m_A* 2h7n_A* 2h7p_A*
2nsd_A* 2pr2_A* 2x22_A* 2x23_A* 3fne_A* 3fnf_A* 3fng_A*
3fnh_A* 3oew_A* 2aqh_A* ...
Length = 269
Score = 69.9 bits (172), Expect = 3e-14
Identities = 45/251 (17%), Positives = 81/251 (32%), Gaps = 60/251 (23%)
Query: 99 IGAATALHLAKLDAKLAITGRNVEQL-NKVSESCQSVSKNKPLVIQADLTSEEDTKRIID 157
I A + A+L +TG + +L ++++ + K +++ D+ +EE +
Sbjct: 21 IAFHIARVAQEQGAQLVLTGFDRLRLIQRITDRLPA----KAPLLELDVQNEEHLASLAG 76
Query: 158 TVVKHY---QKLNVLVN----------NAGNIVNVSSVNGLR-------SFPGVLAYC-- 195
V + KL+ +V+ + + + S+ +
Sbjct: 77 RVTEAIGAGNKLDGVVHSIGFMPQTGMGINPFFDAPYADVSKGIHISAYSYASMAKALLP 136
Query: 196 --------------------------VSKAAVDQFTSCTALELASKGVRVNSVNPG--VT 227
V+K+A++ A E GVR N V G T
Sbjct: 137 IMNPGGSIVGMDFDPSRAMPAYNWMTVAKSALESVNRFVAREAGKYGVRSNLVAAGPIRT 196
Query: 228 LT----NLHKNSGIDQQAYQNFLERSKETHALGR-VGNPEEVAKAIAFLASDDASFTTGE 282
L Q E + +G + + VAK + L SD TTG+
Sbjct: 197 LAMSAIVGGALGEEAGAQIQLLEEGWDQRAPIGWNMKDATPVAKTVCALLSDWLPATTGD 256
Query: 283 HLTVDGGRHAM 293
+ DGG H
Sbjct: 257 IIYADGGAHTQ 267
Score = 37.2 bits (87), Expect = 0.003
Identities = 20/91 (21%), Positives = 39/91 (42%), Gaps = 8/91 (8%)
Query: 1 MNF-TGKVILVTGASSG--IGAATALHLAKLDAKLAITGRNVEQL-NKVSESCQSVSKNK 56
GK ILV+G + I A + A+L +TG + +L ++++ + K
Sbjct: 2 TGLLDGKRILVSGIITDSSIAFHIARVAQEQGAQLVLTGFDRLRLIQRITDRLPA----K 57
Query: 57 PLVIQADLTSEEDTKRIIDTVVKHYQKLNVL 87
+++ D+ +EE + V + N L
Sbjct: 58 APLLELDVQNEEHLASLAGRVTEAIGAGNKL 88
>3grk_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, niaid,
structural genomics, seattle structural genomics center
for infectious disease; 2.35A {Brucella melitensis} PDB:
4eit_A*
Length = 293
Score = 70.0 bits (172), Expect = 4e-14
Identities = 49/242 (20%), Positives = 84/242 (34%), Gaps = 55/242 (22%)
Query: 99 IGAATALHLAKLDAKLAITGRNVEQLNKVSESCQSVSKNKPLVIQADLTSEEDTKRIIDT 158
I A + A+LA T + +V + + + D+ + +T
Sbjct: 45 IAWGIAKAAREAGAELAFTYQGDALKKRVEPLAEEL--GAFVAGHCDVADAASIDAVFET 102
Query: 159 VVKHYQKLNVLVNN---------AGNIVNVSSVNGLR-------SFPGV----------- 191
+ K + KL+ LV+ G ++ S N S V
Sbjct: 103 LEKKWGKLDFLVHAIGFSDKDELTGRYIDTSEANFTNTMLISVYSLTAVSRRAEKLMADG 162
Query: 192 -----LAYC-------------VSKAAVDQFTSCTALELASKGVRVNSVNPG--VTLTNL 231
L Y V+KAA++ A++L + +RVN+++ G TL
Sbjct: 163 GSILTLTYYGAEKVMPNYNVMGVAKAALEASVKYLAVDLGPQNIRVNAISAGPIKTLAA- 221
Query: 232 HKNSGIDQQAYQNFLERSKETHALGRVGNPEEVAKAIAFLASDDASFTTGEHLTVDGGRH 291
SGI ++ L+ ++ L R +EV + SD + TGE D G H
Sbjct: 222 ---SGIGD--FRYILKWNEYNAPLRRTVTIDEVGDVGLYFLSDLSRSVTGEVHHADSGYH 276
Query: 292 AM 293
+
Sbjct: 277 VI 278
>3k31_A Enoyl-(acyl-carrier-protein) reductase; ssgcid, NIH, niaid, SBRI,
UW, decode, eonyl-(acyl-carrier-PR reductase, NAD,
oxidoreductase; HET: NAD; 1.80A {Anaplasma
phagocytophilum} PDB: 3k2e_A*
Length = 296
Score = 70.0 bits (172), Expect = 5e-14
Identities = 52/242 (21%), Positives = 91/242 (37%), Gaps = 55/242 (22%)
Query: 99 IGAATALHLAKLDAKLAITGRNVEQLNKVSESCQSVSKNKPLVIQADLTSEEDTKRIIDT 158
+ A + A++A+T + +V +S+ L + D++ E +
Sbjct: 44 LAWGIAKAVCAQGAEVALTYLSETFKKRVDPLAESL--GVKLTVPCDVSDAESVDNMFKV 101
Query: 159 VVKHYQKLNVLVNN---------AGNIVNVSSVNGLR-------SFPGV----------- 191
+ + + L+ +V+ G V+ S N L SF +
Sbjct: 102 LAEEWGSLDFVVHAVAFSDKNELKGRYVDTSLGNFLTSMHISCYSFTYIASKAEPLMTNG 161
Query: 192 -----LAYC-------------VSKAAVDQFTSCTALELASKGVRVNSVNPG--VTLTNL 231
L+Y V KAA++ A++L + +RVN+++ G TL +
Sbjct: 162 GSILTLSYYGAEKVVPHYNVMGVCKAALEASVKYLAVDLGKQQIRVNAISAGPVRTLAS- 220
Query: 232 HKNSGIDQQAYQNFLERSKETHALGRVGNPEEVAKAIAFLASDDASFTTGEHLTVDGGRH 291
SGI + L +K L R ++V A +L SD TTGE + VD G H
Sbjct: 221 ---SGISD--FHYILTWNKYNSPLRRNTTLDDVGGAALYLLSDLGRGTTGETVHVDCGYH 275
Query: 292 AM 293
+
Sbjct: 276 VV 277
Score = 39.9 bits (94), Expect = 5e-04
Identities = 15/90 (16%), Positives = 37/90 (41%), Gaps = 4/90 (4%)
Query: 1 MNFTGKVILVTGASSG--IGAATALHLAKLDAKLAITGRNVEQLNKVSESCQSVSKNKPL 58
M GK ++ G ++ + A + A++A+T + +V +S+ L
Sbjct: 26 MLMEGKKGVIIGVANDKSLAWGIAKAVCAQGAEVALTYLSETFKKRVDPLAESL--GVKL 83
Query: 59 VIQADLTSEEDTKRIIDTVVKHYQKLNVLV 88
+ D++ E + + + + L+ +V
Sbjct: 84 TVPCDVSDAESVDNMFKVLAEEWGSLDFVV 113
>2o2s_A Enoyl-acyl carrier reductase; enoyl reductase, triclosan, rossmann
fold, oxidoreductase; HET: NAD TCL; 2.60A {Toxoplasma
gondii} PDB: 2o50_A 3nj8_A*
Length = 315
Score = 66.0 bits (161), Expect = 1e-12
Identities = 67/326 (20%), Positives = 110/326 (33%), Gaps = 68/326 (20%)
Query: 1 MNFTGKVILVTGASS--GIGAATALHLAKLDAKLAITGRNVEQLNKVSESCQSVSKNKPL 58
++ G+ V G + G G A A HLA A++A+ L +S QS ++
Sbjct: 5 IDLRGQTAFVAGVADSHGYGWAIAKHLASAGARVALGTWP-PVLGLFQKSLQSGRLDEDR 63
Query: 59 VIQADLTSEEDTKRIIDTVV--KHYQKLNVLVNNAVTGASSGIGAATALHLAK----LDA 112
+ E +D ++ N G A+ + + +D
Sbjct: 64 KLPDGSLIEFAGVYPLDAAFDKPEDVPQDIKDNKRYAGVDGYTIKEVAVKVKQDLGNIDI 123
Query: 113 -------KLAITGRNVEQLNKVSESCQSVSKNKPLVIQADLTSEEDTKRIIDT------- 158
+T +E TS +
Sbjct: 124 LVHSLANGPEVTKPLLE------------------------TSRKGYLAASSNSAYSFVS 159
Query: 159 VVKHYQKLNVLVNNAGNIVNVSSVNGLRSFPGVLAYC----VSKAAVDQFTSCTALELAS 214
+++H+ + +N G+ V +S + R PG Y +KAA++ T A E
Sbjct: 160 LLQHFGPI---MNEGGSAVTLSYLAAERVVPG---YGGGMSSAKAALESDTRTLAWEAGQ 213
Query: 215 K-GVRVNSVNPG--VTLTNLHKNSGI-DQQAYQNF---LERSKETHALGRVGNPEEVAKA 267
K GVRVN+++ G + S I ++ S L R + ++V A
Sbjct: 214 KYGVRVNAISAGPLKSRAA----SAIGKSGEKSFIDYAIDYSYNNAPLRRDLHSDDVGGA 269
Query: 268 IAFLASDDASFTTGEHLTVDGGRHAM 293
FL S A +G L VD G HAM
Sbjct: 270 ALFLLSPLARAVSGVTLYVDNGLHAM 295
>2ptg_A Enoyl-acyl carrier reductase; apicomplexa, enoyl (acyl-carrier-P
reductase, oxidoreductase; 2.60A {Eimeria tenella}
Length = 319
Score = 65.2 bits (159), Expect = 3e-12
Identities = 61/326 (18%), Positives = 114/326 (34%), Gaps = 55/326 (16%)
Query: 1 MNFTGKVILVTGASS--GIGAATALHLAKLDAKLAIT--GRNVEQLNKVSESCQSVSKNK 56
++ GK V G + G G A L A++ + K ES + +
Sbjct: 5 VDLRGKTAFVAGVADSNGYGWAICKLLRAAGARVLVGTWPPVYSIFKKGLESSRFEQDSF 64
Query: 57 PLVIQADLTSEEDTKRIIDTVVKHYQKLNVLVNNAVTGASSGIGAATALHLAKLDAKLAI 116
+ + E ++ +D V L + + K
Sbjct: 65 YAQEPSSKVAAEAAEKPVDLVFDKIYPL-----------DAVFDTPQDVPPEVSSNK-RY 112
Query: 117 TGRNVEQLNKVSESCQSVSKNKPLVIQADLTSEEDTKRIIDT------------------ 158
G +++V+E+ ++ +++ + E TK ++ T
Sbjct: 113 AGVGGFTISEVAEAVRADVGQIDILVHSLANGPEVTKPLLQTSRKGYLAAVSSSSYSFVS 172
Query: 159 VVKHYQKLNVLVNNAGNIVNVSSVNGLRSFPGVLAYCVS----KAAVDQFTSCTALEL-A 213
+++H+ L + G+ + +S + + PG Y KAA++ A E
Sbjct: 173 LLQHFLPL---MKEGGSALALSYIASEKVIPG---YGGGMSSAKAALESDCRTLAFEAGR 226
Query: 214 SKGVRVNSVNPG--VTLTNLHKNSGI----DQQAYQNFLERSKETHALGRVGNPEEVAKA 267
++ VRVN ++ G + S I D+ ++ S+ L + ++V +A
Sbjct: 227 ARAVRVNCISAGPLKSRAA----SAIGKAGDKTFIDLAIDYSEANAPLQKELESDDVGRA 282
Query: 268 IAFLASDDASFTTGEHLTVDGGRHAM 293
FL S A TG L VD G HAM
Sbjct: 283 ALFLLSPLARAVTGATLYVDNGLHAM 308
>3s8m_A Enoyl-ACP reductase; rossmann fold, oxidoreductase, NADH binding,
fatty acid SYNT enoyl-ACP; 1.60A {Xanthomonas oryzae PV}
Length = 422
Score = 64.4 bits (156), Expect = 8e-12
Identities = 43/306 (14%), Positives = 94/306 (30%), Gaps = 33/306 (10%)
Query: 5 GKVILVTGASSGIGAATALHLA-KLDAKLAITGRNVEQLNKVSESCQSVSKN-------- 55
K +LV GASSG G A+ + A A + + +
Sbjct: 61 PKKVLVIGASSGYGLASRITAAFGFGADTLGVFFEKPGTASKAGTAGWYNSAAFDKHAKA 120
Query: 56 ---KPLVIQADLTSEEDTKRIIDTVVKHY-QKLNVLVNNAVTGASSGIGAATALHLAKLD 111
I D S+ ++I+ + +++++V + + G+ A
Sbjct: 121 AGLYSKSINGDAFSDAARAQVIELIKTEMGGQVDLVVYSLASPVRKLPGSGEVKRSALKP 180
Query: 112 AKLAITGRNVEQLN-KVSESCQSVSKNKPLVIQADLTSEEDTKRIIDTVVKHYQKLNVLV 170
T ++ + ++ + + + + +D + ID + ++
Sbjct: 181 IGQTYTATAIDTNKDTIIQASIEPASAQEIEDTITVMGGQDWELWIDALEGAG-----VL 235
Query: 171 NNAGNIVNVSSVNGLRSFP----GVLAYCVSKAAVDQFTSCTALELASKGVRVNSVNPGV 226
+ V S + ++P G L +K +D+ LA G N
Sbjct: 236 ADGARSVAFSYIGTEITWPIYWHGALG--KAKVDLDRTAQRLNARLAKHGGGANVAVLKS 293
Query: 227 TLTNLHKNSGIDQ-QAYQNFLERSKETHALGRVGNPEEVAKAIAFLASDDASFTTGEHLT 285
+T ++ I Y + + + + G E + + L + G+
Sbjct: 294 VVTQ--ASAAIPVMPLYISMVYK-----IMKEKGLHEGTIEQLDRLFRERLYRQDGQPAE 346
Query: 286 VDGGRH 291
VD
Sbjct: 347 VDEQNR 352
>1d7o_A Enoyl-[acyl-carrier protein] reductase (NADH) PRE; triclosan, enoyl
reductase, oxidoreductase; HET: NAD TCL; 1.90A {Brassica
napus} SCOP: c.2.1.2 PDB: 1eno_A* 1enp_A* 1cwu_A*
Length = 297
Score = 63.6 bits (155), Expect = 8e-12
Identities = 59/320 (18%), Positives = 113/320 (35%), Gaps = 62/320 (19%)
Query: 1 MNFTGKVILVTGASS--GIGAATALHLAKLDAKLAITGRNVEQLNKVSESCQSVSKNKPL 58
++ GK + G + G G A A LA A++ + LN S + ++
Sbjct: 4 IDLRGKRAFIAGIADDNGYGWAVAKSLAAAGAEILVGTWV-PALNIFETSLRRGKFDQSR 62
Query: 59 VIQADLTSEEDTKRIIDTVVKHYQKLNVLVNNAVTGASSGIGAATALHLAKLDAKLAITG 118
V+ E +K L+ + + + A G
Sbjct: 63 VLPDGSLME----------IKKVYPLDAVFD------------NPEDVPEDVKANKRYAG 100
Query: 119 RNVEQLNKVSESCQSVSKNKPLVIQADLTSEEDTKRIIDT------------------VV 160
+ + + +E + + +++ + E +K +++T ++
Sbjct: 101 SSNWTVQEAAECVRQDFGSIDILVHSLANGPEVSKPLLETSRKGYLAAISASSYSFVSLL 160
Query: 161 KHYQKLNVLVNNAGNIVNVSSVNGLRSFPGVLAYCVS----KAAVDQFTSCTALELASK- 215
H+ + +N G ++++ + R PG Y KAA++ T A E K
Sbjct: 161 SHFLPI---MNPGGASISLTYIASERIIPG---YGGGMSSAKAALESDTRVLAFEAGRKQ 214
Query: 216 GVRVNSVNPG--VTLTNLHKNSGIDQQAYQNFLERSKETHALGRVGNPEEVAKAIAFLAS 273
+RVN+++ G + I +E S + + +EV A AFL S
Sbjct: 215 NIRVNTISAGPLGSRAA----KAIGF--IDTMIEYSYNNAPIQKTLTADEVGNAAAFLVS 268
Query: 274 DDASFTTGEHLTVDGGRHAM 293
AS TG + VD G ++M
Sbjct: 269 PLASAITGATIYVDNGLNSM 288
>1lu9_A Methylene tetrahydromethanopterin dehydrogenase; alpha/beta twisted
open sheet structure, oxidoreductase; 1.90A
{Methylobacterium extorquens} SCOP: c.2.1.7 c.58.1.4
PDB: 1lua_A*
Length = 287
Score = 58.0 bits (140), Expect = 6e-10
Identities = 15/94 (15%), Positives = 33/94 (35%), Gaps = 9/94 (9%)
Query: 1 MNFTGKVILVTGASSGIGAATALHLAKLDAKLAITGRNVEQLNKVSESCQSVSKNKPLVI 60
+ GK +V + +G +A LA A++ + GR +++ ++S K V
Sbjct: 115 GSVKGKKAVVLAGTGPVGMRSAALLAGEGAEVVLCGRKLDKAQAAADSVNKRFKVN--VT 172
Query: 61 QADLTSEEDTKRIIDTVVKHYQKLNVLVNNAVTG 94
A+ + + + + G
Sbjct: 173 AAETADDASRAEAVKGA-------HFVFTAGAIG 199
Score = 51.0 bits (122), Expect = 1e-07
Identities = 12/96 (12%), Positives = 32/96 (33%), Gaps = 9/96 (9%)
Query: 92 VTGASSGIGAATALHLAKLDAKLAITGRNVEQLNKVSESCQSVSKNKPLVIQADLTSEED 151
V + +G +A LA A++ + GR +++ ++S K V A+ +
Sbjct: 124 VLAGTGPVGMRSAALLAGEGAEVVLCGRKLDKAQAAADSVNKRFKVN--VTAAETADDAS 181
Query: 152 TKRIIDTVVKHYQKLNVLVNNAGNIVNVSSVNGLRS 187
+ + + + + ++
Sbjct: 182 RAEAVKGA-------HFVFTAGAIGLELLPQAAWQN 210
>3lt0_A Enoyl-ACP reductase; triclosan, triclosan variant, oxidoredu
P.falciparum; HET: NAD FT1; 1.96A {Plasmodium
falciparum} PDB: 1v35_A* 3lsy_A* 1uh5_A* 3lt1_A* 3lt2_A*
3lt4_A* 3am4_A* 3am3_A* 3am5_A* 2o2y_A* 2oos_A* 2ol4_A*
2op0_A* 2op1_A* 1vrw_A* 1zsn_A* 1zw1_A* 1zxb_A* 1zxl_A*
2foi_A* ...
Length = 329
Score = 49.5 bits (118), Expect = 4e-07
Identities = 42/353 (11%), Positives = 101/353 (28%), Gaps = 93/353 (26%)
Query: 5 GKVILVTGASS--GIGAATALHLAKLDAKLAITGRNVEQLNKVSESCQSVSKNKPLVIQA 62
+ + G G G A L+K + K+ N ++ ++ + ++I
Sbjct: 2 EDICFIAGIGDTNGYGWGIAKELSKRNVKIIFGIWP-PVYNIFMKNYKNGKFDNDMIIDK 60
Query: 63 DLTSEEDTKRIIDTVVKHYQKLNVLVNNAVTGASSGIGAATALHLAKLDAKLAITGRNVE 122
D D ++ N
Sbjct: 61 DKKMNILDMLPFDASFDTANDIDEETKNNKRYNML----------------------QNY 98
Query: 123 QLNKVSESCQSVSKNKPLVIQADLTSEEDTKRIIDT------------------VVKHYQ 164
+ V+ +++ + ++E K +++T + K++
Sbjct: 99 TIEDVANLIHQKYGKINMLVHSLANAKEVQKDLLNTSRKGYLDALSKSSYSLISLCKYFV 158
Query: 165 KLNVLVNNAGNIVNVSSVNGLRSFPGVLAYC----VSKAAVDQFTSCTALELASK-GVRV 219
+ + +I++++ + PG Y +KAA++ T A L +R+
Sbjct: 159 NI---MKPQSSIISLTYHASQKVVPG---YGGGMSSAKAALESDTRVLAYHLGRNYNIRI 212
Query: 220 NSVNPG---------------------------------------VTLTNLHKNSGIDQQ 240
N+++ G ++ +
Sbjct: 213 NTISAGPLKSRAATAINKLNNTYENNTNQNKNRNRHDVHNIMNNSGEKEEKKISASQNYT 272
Query: 241 AYQNFLERSKETHALGRVGNPEEVAKAIAFLASDDASFTTGEHLTVDGGRHAM 293
+E S++ L + ++ +FL S ++ TG+ + VD G + M
Sbjct: 273 FIDYAIEYSEKYAPLRQKLLSTDIGSVASFLLSRESRAITGQTIYVDNGLNIM 325
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 43.5 bits (102), Expect = 6e-05
Identities = 50/240 (20%), Positives = 76/240 (31%), Gaps = 85/240 (35%)
Query: 91 AVTGASSGIGAATALHLAK-----LD-AKLAIT-----G-RNVEQLNKVS------ESCQ 132
TG S G+ A A+ + AIT G R E S E
Sbjct: 269 GATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSL 328
Query: 133 SVSKNKP---LVIQADLTSEEDTKRIIDTVVKHYQKLNVLVNNAGNIVNVSSVNGLRSFP 189
++ P L I +LT E+ V + K N + + +S VNG ++
Sbjct: 329 ENNEGVPSPMLSIS-NLTQEQ--------VQDYVNKTNSHLPAGKQV-EISLVNGAKNL- 377
Query: 190 GVLAYCVSKAAVDQFTSCTALELASKGVRVNSVNPGVTL----TNLHKN---SGIDQQAY 242
V++ G P +L L K SG+D Q+
Sbjct: 378 -VVS----------------------G-------PPQSLYGLNLTLRKAKAPSGLD-QSR 406
Query: 243 QNFLER-SKETHALGRVGNP------EEVAKAIAF-LASDDASFTTGEHL------TVDG 288
F ER K ++ V +P + I L ++ SF + + T DG
Sbjct: 407 IPFSERKLKFSNRFLPVASPFHSHLLVPASDLINKDLVKNNVSF-NAKDIQIPVYDTFDG 465
Score = 43.1 bits (101), Expect = 8e-05
Identities = 61/283 (21%), Positives = 98/283 (34%), Gaps = 82/283 (28%)
Query: 10 VTGASSGIGAATALHLAK-----LD-AKLAIT-----G-RNVEQLNKVS------ESCQS 51
TG S G+ A A+ + AIT G R E S E
Sbjct: 270 ATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLE 329
Query: 52 VSKNKP---LVIQADLTSEEDTKRIIDTVVKH---YQKLNV-LVNNA----VTG-ASSGI 99
++ P L I +LT E+ + ++ H +++ + LVN A V+G S
Sbjct: 330 NNEGVPSPMLSIS-NLTQEQ-VQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSLY 387
Query: 100 GAATALHLAKLDAKLAITGRNVEQLNKVSESCQSVSKNKP------LVIQADLTSE--ED 151
G L AK + L +Q +++ S+ K L + + S
Sbjct: 388 GLNLTLRKAKAPSGL-------DQ-SRI-----PFSERKLKFSNRFLPVASPFHSHLLVP 434
Query: 152 TKRIIDTVVKHYQKLNVLVNNAGNIVNV-SSVNG--LRSFPG----VLAYCVSKAAVDQF 204
D + K K NV N + V + +G LR G + C+ + V +
Sbjct: 435 AS---DLINKDLVKNNVSFNAKDIQIPVYDTFDGSDLRVLSGSISERIVDCIIRLPVK-W 490
Query: 205 TSCTALELASK----GVRVNSVNPGVT--LTNL-HKN---SGI 237
+ T + A+ G PG L L H+N +G+
Sbjct: 491 ETTTQFK-ATHILDFG-------PGGASGLGVLTHRNKDGTGV 525
>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR;
fatty acid synthase, acyl-carrier-protein, beta-ketoacyl
RED beta-ketoacyl synthase, dehydratase; 4.00A
{Saccharomyces cerevisiae}
Length = 1688
Score = 42.9 bits (101), Expect = 9e-05
Identities = 23/80 (28%), Positives = 41/80 (51%), Gaps = 9/80 (11%)
Query: 3 FTGKVILVTGASSG-IGAATALHLAKLDAKLAITGRNVEQLNKVSESCQSV-----SKNK 56
F K +L+TGA G IGA L + AK+ +T + +V++ QS+ +K
Sbjct: 474 FKDKYVLITGAGKGSIGAEVLQGLLQGGAKVVVTTSRFSK--QVTDYYQSIYAKYGAKGS 531
Query: 57 PL-VIQADLTSEEDTKRIID 75
L V+ + S++D + +I+
Sbjct: 532 TLIVVPFNQGSKQDVEALIE 551
>3zu3_A Putative reductase YPO4104/Y4119/YP_4011; oxidoreductase, fatty
acid biosynthesis II, short-chain dehydrogenase
reductase superfamily; HET: NAI; 1.80A {Yersinia pestis}
PDB: 3zu4_A* 3zu5_A* 3zu2_A*
Length = 405
Score = 39.7 bits (92), Expect = 8e-04
Identities = 37/244 (15%), Positives = 74/244 (30%), Gaps = 27/244 (11%)
Query: 5 GKVILVTGASSGIGAATALHLAKLDAKLAITGRNVE-------------QLNKVSESCQS 51
K +LV GAS+G G A + A G E + +
Sbjct: 47 PKRVLVIGASTGYGLAARITAA-FGCGADTLGVFFERPGEEGKPGTSGWYNSAAFHKFAA 105
Query: 52 VSKNKPLVIQADLTSEEDTKRIIDTVVKHYQKLNVLVNNAVTGASSGIGAATALHLAKLD 111
I D S+E + ID + + +++ ++ + + + + A
Sbjct: 106 QKGLYAKSINGDAFSDEIKQLTIDAIKQDLGQVDQVIYSLASPRRTHPKTGEVFNSALKP 165
Query: 112 AKLAITGRNVE-QLNKVSESCQSVSKNKPLVIQADLTSEEDTKRIIDTVVKHYQKLNVLV 170
A+ R ++ + ES + + + ED + ID ++ VL
Sbjct: 166 IGNAVNLRGLDTDKEVIKESVLQPATQSEIDSTVAVMGGEDWQMWIDALLDA----GVLA 221
Query: 171 NNAGNIVNVSSVNGLRSFP----GVLAYCVSKAAVDQFTSCTALELASK-GVRVNSVNPG 225
A + + + G + +K +DQ LA+ G
Sbjct: 222 EGA-QTTAFTYLGEKITHDIYWNGSIG--AAKKDLDQKVLAIRESLAAHGGGDARVSVLK 278
Query: 226 VTLT 229
++
Sbjct: 279 AVVS 282
>1xgk_A Nitrogen metabolite repression regulator NMRA; rossmann fold,
transcriptional regulation, short chain dehyd
reductase, NADP binding; 1.40A {Emericella nidulans}
SCOP: c.2.1.2 PDB: 1k6x_A* 1k6j_A 1k6i_A* 1ti7_A*
2vus_A 2vut_A* 2vuu_A*
Length = 352
Score = 39.4 bits (92), Expect = 8e-04
Identities = 12/72 (16%), Positives = 24/72 (33%), Gaps = 8/72 (11%)
Query: 1 MNFTGKVILVTGASSGIGAATALHLAKLDAKL-AITGRNVEQLNKVSESCQSVSKNKPL- 58
M K I V GA+ GA+ A + + A +++ + + +
Sbjct: 1 MAQQKKTIAVVGATGRQGASLIRVAAAVGHHVRAQV-HSLK-----GLIAEELQAIPNVT 54
Query: 59 VIQADLTSEEDT 70
+ Q L +
Sbjct: 55 LFQGPLLNNVPL 66
Score = 30.6 bits (69), Expect = 0.58
Identities = 10/64 (15%), Positives = 22/64 (34%), Gaps = 8/64 (12%)
Query: 91 AVTGASSGIGAATALHLAKLDAKL-AITGRNVEQLNKVSESCQSVSKNKPL-VIQADLTS 148
AV GA+ GA+ A + + A +++ + + + + Q L +
Sbjct: 9 AVVGATGRQGASLIRVAAAVGHHVRAQV-HSLK-----GLIAEELQAIPNVTLFQGPLLN 62
Query: 149 EEDT 152
Sbjct: 63 NVPL 66
>2x4g_A Nucleoside-diphosphate-sugar epimerase; isomerase; 2.65A
{Pseudomonas aeruginosa}
Length = 342
Score = 37.7 bits (88), Expect = 0.003
Identities = 33/179 (18%), Positives = 56/179 (31%), Gaps = 53/179 (29%)
Query: 92 VTGASSGIGAATALHLAKLDAKLAITGRNVEQLNKVSESCQSVSKNKPLVIQADLTSEED 151
V GA+ +G A + L + R S Q ++ +P A++
Sbjct: 18 VLGATGLLGHHAARAIRAAGHDLVLIHRP-------SSQIQRLAYLEPECRVAEMLDHAG 70
Query: 152 TKRI---IDTVV----------KHYQKL---------NVL--VNNAG--NIVNVSSVNGL 185
+R +D V+ + +Q+ A I+ V S +
Sbjct: 71 LERALRGLDGVIFSAGYYPSRPRRWQEEVASALGQTNPFYAACLQARVPRILYVGSAYAM 130
Query: 186 RSFP----------------GVLAYCVSKAAVDQFTSCTALELASKGVRVNSVNPGVTL 228
P G +Y + K A+D+ A E A G+ V PG+ L
Sbjct: 131 PRHPQGLPGHEGLFYDSLPSGKSSYVLCKWALDEQ----AREQARNGLPVVIGIPGMVL 185
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 34.1 bits (77), Expect = 0.063
Identities = 27/191 (14%), Positives = 50/191 (26%), Gaps = 63/191 (32%)
Query: 31 KLAITGRNV---EQL------NKVSESCQSVSK---NKPLV-------------IQADLT 65
+L++ + L + + V LV I +L
Sbjct: 377 RLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELK 436
Query: 66 SEEDT-----KRIIDTVVKHYQKLNVLVNNAVTGAS------SGIGAATALHLAK----- 109
+ + + I+D HY ++ + S IG HL
Sbjct: 437 VKLENEYALHRSIVD----HYNIPKTFDSDDLIPPYLDQYFYSHIG----HHLKNIEHPE 488
Query: 110 --------------LDAKLAITGRNVEQLNKVSESCQSVSKNKPLVIQADLTSEEDTKRI 155
L+ K+ + + Q + KP + D E I
Sbjct: 489 RMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAI 548
Query: 156 IDTVVKHYQKL 166
+D + K + L
Sbjct: 549 LDFLPKIEENL 559
Score = 29.4 bits (65), Expect = 1.8
Identities = 15/92 (16%), Positives = 28/92 (30%), Gaps = 5/92 (5%)
Query: 23 LHLAKLDAKLAITGRNVEQLNKVSESCQSVSKNKPLVIQADLTSEEDTKRIIDTVVKHYQ 82
L L+ K+ + + Q + KP + D E I+D + K +
Sbjct: 498 LDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEE 557
Query: 83 KLNV-----LVNNAVTGASSGIGAATALHLAK 109
L L+ A+ I + +
Sbjct: 558 NLICSKYTDLLRIALMAEDEAIFEEAHKQVQR 589
>1ff9_A Saccharopine reductase; lysine biosynthesis, alpha-aminoadipate
pathway, dehydrogenase, oxidoreductase; 2.00A
{Magnaporthe grisea} SCOP: c.2.1.3 d.81.1.2 PDB:
1e5l_A* 1e5q_A
Length = 450
Score = 33.4 bits (75), Expect = 0.089
Identities = 16/79 (20%), Positives = 29/79 (36%), Gaps = 11/79 (13%)
Query: 4 TGKVILVTGASSG-IGAATALHLAKLDAKLAITGRNVEQLNKVSESCQSVSKNKPLVIQA 62
K +L+ G+ G + T L K+ + R +E K+S Q + I
Sbjct: 2 ATKSVLMLGS--GFVTRPTLDVLTDSGIKVTVACRTLESAKKLSAGVQHST-----PISL 54
Query: 63 DLTSEEDTKRII---DTVV 78
D+ + + D V+
Sbjct: 55 DVNDDAALDAEVAKHDLVI 73
Score = 29.1 bits (64), Expect = 1.9
Identities = 12/66 (18%), Positives = 22/66 (33%), Gaps = 8/66 (12%)
Query: 98 GIGAATALHLAKLDAKLAITGRNVEQLNKVSESCQSVSKNKPLVIQADLTSEEDTKRII- 156
+ T L K+ + R +E K+S Q + I D+ + +
Sbjct: 13 FVTRPTLDVLTDSGIKVTVACRTLESAKKLSAGVQHST-----PISLDVNDDAALDAEVA 67
Query: 157 --DTVV 160
D V+
Sbjct: 68 KHDLVI 73
>2wm3_A NMRA-like family domain containing protein 1; unknown function;
HET: NAP NFL; 1.85A {Homo sapiens} PDB: 2wmd_A* 2exx_A*
3dxf_A 3e5m_A
Length = 299
Score = 32.7 bits (75), Expect = 0.10
Identities = 12/66 (18%), Positives = 25/66 (37%), Gaps = 8/66 (12%)
Query: 6 KVILVTGASSGIGAATALHLAKLDAK--LAITGRNVEQLNKVSESCQSVSKNKPLVIQAD 63
K+++V G + G + A L + +T RN ++ + + V+Q D
Sbjct: 6 KLVVVFGGTGAQGGSVARTLLEDGTFKVRVVT-RNPR-----KKAAKELRLQGAEVVQGD 59
Query: 64 LTSEED 69
+
Sbjct: 60 QDDQVI 65
Score = 28.5 bits (64), Expect = 2.4
Identities = 24/158 (15%), Positives = 45/158 (28%), Gaps = 23/158 (14%)
Query: 91 AVTGASSGIGAATALHLAKLDAK--LAITGRNVEQLNKVSESCQSVSKNKPLVIQADLTS 148
V G + G + A L + +T RN ++ + + V+Q D
Sbjct: 9 VVFGGTGAQGGSVARTLLEDGTFKVRVVT-RNPR-----KKAAKELRLQGAEVVQGDQDD 62
Query: 149 EEDTKRIID--------TVVKHYQKLNVLVNNAGNIVNVSSVNGLR-----SFPGVLAYC 195
+ + ++ T V + +++ GL +
Sbjct: 63 QVIMELALNGAYATFIVTNYWESCSQEQEVKQGKLLADLARRLGLHYVVYSGLENIKKLT 122
Query: 196 VSKAAVDQFTSCTALE--LASKGVRVNSVNPGVTLTNL 231
+ A F +E GV + SV NL
Sbjct: 123 AGRLAAAHFDGKGEVEEYFRDIGVPMTSVRLPCYFENL 160
>1zsy_A Mitochondrial 2-enoyl thioester reductase; medium-chain
dehydrogenase/reductase, oxidoreductase, 2-ENOY
thioester reductase; 1.75A {Homo sapiens} PDB: 2vcy_A
Length = 357
Score = 32.6 bits (75), Expect = 0.14
Identities = 11/48 (22%), Positives = 24/48 (50%), Gaps = 2/48 (4%)
Query: 5 GKVILVTGASSGIGAATALHLAK-LDAKLAITGRNVEQLNKVSESCQS 51
G ++ ++SG+G A + +A L + R+ + K+S+ +S
Sbjct: 168 GDSVIQNASNSGVGQA-VIQIAAALGLRTINVVRDRPDIQKLSDRLKS 214
Score = 28.0 bits (63), Expect = 3.7
Identities = 10/43 (23%), Positives = 21/43 (48%), Gaps = 2/43 (4%)
Query: 92 VTGASSGIGAATALHLAK-LDAKLAITGRNVEQLNKVSESCQS 133
++SG+G A + +A L + R+ + K+S+ +S
Sbjct: 173 QNASNSGVGQA-VIQIAAALGLRTINVVRDRPDIQKLSDRLKS 214
>3i6i_A Putative leucoanthocyanidin reductase 1; rossmann fold, short
chain dehydrogenase reductase, flavonoi oxidoreductase;
HET: NDP; 1.75A {Vitis vinifera} PDB: 3i5m_A 3i52_A*
3i6q_A*
Length = 346
Score = 32.3 bits (73), Expect = 0.17
Identities = 14/83 (16%), Positives = 31/83 (37%), Gaps = 5/83 (6%)
Query: 1 MNFTGKVILVTGASSGIGAATALHLAKLDAKLAITGRNVEQLNKVSESCQSVSKNKPLVI 60
+ +L+ GA+ IG A I R + ++ +++ +++
Sbjct: 6 VPSPKGRVLIAGATGFIGQFVATASLDAHRPTYILARPGPRSPSKAKIFKALEDKGAIIV 65
Query: 61 QADLTSEEDTKRI-----IDTVV 78
+ +E ++I ID VV
Sbjct: 66 YGLINEQEAMEKILKEHEIDIVV 88
Score = 28.8 bits (64), Expect = 2.1
Identities = 13/75 (17%), Positives = 28/75 (37%), Gaps = 5/75 (6%)
Query: 91 AVTGASSGIGAATALHLAKLDAKLAITGRNVEQLNKVSESCQSVSKNKPLVIQADLTSEE 150
+ GA+ IG A I R + ++ +++ +++ + +E
Sbjct: 14 LIAGATGFIGQFVATASLDAHRPTYILARPGPRSPSKAKIFKALEDKGAIIVYGLINEQE 73
Query: 151 DTKRI-----IDTVV 160
++I ID VV
Sbjct: 74 AMEKILKEHEIDIVV 88
>2v6g_A Progesterone 5-beta-reductase; tyrosine-dependent oxidoreductase,
oxidoreductase, SDR, cardenolides, cardiac glycosides;
HET: NAP; 2.3A {Digitalis lanata} PDB: 2v6f_A*
Length = 364
Score = 32.0 bits (72), Expect = 0.22
Identities = 8/25 (32%), Positives = 11/25 (44%)
Query: 6 KVILVTGASSGIGAATALHLAKLDA 30
V L+ G + IG + A L D
Sbjct: 2 SVALIVGVTGIIGNSLAEILPLADT 26
>2hk9_A Shikimate dehydrogenase; shikimate pathway, drug design,
oxidoreductase; HET: ATR SKM NAP; 2.20A {Aquifex
aeolicus} PDB: 2hk8_A 2hk7_A
Length = 275
Score = 31.3 bits (72), Expect = 0.26
Identities = 17/67 (25%), Positives = 31/67 (46%), Gaps = 7/67 (10%)
Query: 2 NFTGKVILVTGASSGIGAATA--LHLAKLDAKLAITGRNVEQLNKVSE--SCQSVSKNKP 57
K ILV GA GA+ A L K AK+ + R E+ K+++ + V+ +
Sbjct: 126 EVKEKSILVLGAG---GASRAVIYALVKEGAKVFLWNRTKEKAIKLAQKFPLEVVNSPEE 182
Query: 58 LVIQADL 64
++ + +
Sbjct: 183 VIDKVQV 189
>4dup_A Quinone oxidoreductase; PSI-biology, structural genomics, protein
structure initiati structural genomics research
consortium, nysgrc; 2.45A {Rhizobium etli}
Length = 353
Score = 31.4 bits (72), Expect = 0.30
Identities = 12/44 (27%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
Query: 5 GKVILVTGASSGIGAATALHLAK-LDAKLAITGRNVEQLNKVSE 47
G+ +L+ G +SGIG A+ LA+ A++ T + +
Sbjct: 168 GESVLIHGGTSGIGTT-AIQLARAFGAEVYATAGSTGKCEACER 210
>2j8z_A Quinone oxidoreductase; medium-chain dehydrogenase- reductases,
QUIN oxidoreductase, oxidative stress response; HET:
NAP; 2.50A {Homo sapiens} PDB: 2oby_A*
Length = 354
Score = 31.4 bits (72), Expect = 0.31
Identities = 11/44 (25%), Positives = 21/44 (47%), Gaps = 2/44 (4%)
Query: 5 GKVILVTGASSGIGAATALHLAK-LDAKLAITGRNVEQLNKVSE 47
G +L+ SG+G A A+ L + A +T + ++L +
Sbjct: 163 GDYVLIHAGLSGVGTA-AIQLTRMAGAIPLVTAGSQKKLQMAEK 205
>1y1p_A ARII, aldehyde reductase II; rossmann fold, short chain
dehydrogenase reductase, oxidoreductase; HET: NMN AMP;
1.60A {Sporidiobolus salmonicolor} SCOP: c.2.1.2 PDB:
1ujm_A* 1zze_A
Length = 342
Score = 31.1 bits (71), Expect = 0.39
Identities = 12/67 (17%), Positives = 28/67 (41%), Gaps = 5/67 (7%)
Query: 5 GKVILVTGASSGIGAATALHLAKLDAKLAITG--RNVEQLNKVSESCQSVSKNK-PLVIQ 61
G ++LVTGA+ + + L L+ + G R+ +L + + + + +
Sbjct: 11 GSLVLVTGANGFVASHVVEQL--LEHGYKVRGTARSASKLANLQKRWDAKYPGRFETAVV 68
Query: 62 ADLTSEE 68
D+ +
Sbjct: 69 EDMLKQG 75
>1iz0_A Quinone oxidoreductase; APO-enzyme, riken structural
genomics/proteomics initiative, RSGI, structural
genomics; 2.30A {Thermus thermophilus} SCOP: b.35.1.2
c.2.1.1 PDB: 1iyz_A 2cf2_D
Length = 302
Score = 31.0 bits (71), Expect = 0.43
Identities = 10/39 (25%), Positives = 21/39 (53%), Gaps = 2/39 (5%)
Query: 5 GKVILVTGASSGIGAATALHLAK-LDAKLAITGRNVEQL 42
G+ +LV A+ +G A A+ +A+ + ++ E+L
Sbjct: 126 GEKVLVQAAAGALGTA-AVQVARAMGLRVLAAASRPEKL 163
Score = 27.1 bits (61), Expect = 7.8
Identities = 8/34 (23%), Positives = 17/34 (50%), Gaps = 2/34 (5%)
Query: 92 VTGASSGIGAATALHLAK-LDAKLAITGRNVEQL 124
V A+ +G A A+ +A+ + ++ E+L
Sbjct: 131 VQAAAGALGTA-AVQVARAMGLRVLAAASRPEKL 163
>3ruf_A WBGU; rossmann fold, UDP-hexose 4-epimerase, isomerase; HET: NAD
UDP; 2.00A {Plesiomonas shigelloides} PDB: 3ru9_A*
3rud_A* 3rue_A* 3rua_A* 3ruh_A* 3ruc_A* 3ru7_A* 3lu1_A*
Length = 351
Score = 31.1 bits (71), Expect = 0.44
Identities = 18/86 (20%), Positives = 37/86 (43%), Gaps = 9/86 (10%)
Query: 1 MNFTGKVILVTGASSGIGAATALHLAKLDAKLAI-----TGRNVEQLNKVSESCQSVSKN 55
+ F+ K L+TG + IG+ L KL+ + TG L++V + +
Sbjct: 21 LIFSPKTWLITGVAGFIGSNLLEKLLKLNQVVIGLDNFSTGHQY-NLDEVKTLVSTEQWS 79
Query: 56 KPLVIQADLTSEEDTKRI---IDTVV 78
+ I+ D+ +++ +D V+
Sbjct: 80 RFCFIEGDIRDLTTCEQVMKGVDHVL 105
>3pi7_A NADH oxidoreductase; groes-like fold, NAD(P)-binding rossmann fold,
structural GE joint center for structural genomics,
JCSG; HET: MSE; 1.71A {Mesorhizobium loti}
Length = 349
Score = 31.1 bits (71), Expect = 0.45
Identities = 10/39 (25%), Positives = 18/39 (46%), Gaps = 2/39 (5%)
Query: 5 GKVILVTGASSGIGAATALHLAK-LDAKLAITGRNVEQL 42
K ++T +S + + LAK + +T R EQ+
Sbjct: 165 EKAFVMTAGASQLC-KLIIGLAKEEGFRPIVTVRRDEQI 202
>2fr1_A Erythromycin synthase, eryai; short chain dehydrogenase/reductase,
oxidoreductase; HET: NDP; 1.79A {Saccharopolyspora
erythraea} SCOP: c.2.1.2 c.2.1.2 PDB: 2fr0_A*
Length = 486
Score = 30.8 bits (70), Expect = 0.60
Identities = 12/30 (40%), Positives = 16/30 (53%), Gaps = 1/30 (3%)
Query: 9 LVTGASSGIGAATALHLAKLDAK-LAITGR 37
LVTG + G+G A LA+ A L + R
Sbjct: 230 LVTGGTGGVGGQIARWLARRGAPHLLLVSR 259
Score = 28.1 bits (63), Expect = 3.7
Identities = 11/29 (37%), Positives = 15/29 (51%), Gaps = 1/29 (3%)
Query: 92 VTGASSGIGAATALHLAKLDAK-LAITGR 119
VTG + G+G A LA+ A L + R
Sbjct: 231 VTGGTGGVGGQIARWLARRGAPHLLLVSR 259
>2gas_A Isoflavone reductase; NADPH-dependent reductase, oxidoreductase;
1.60A {Medicago sativa}
Length = 307
Score = 30.2 bits (68), Expect = 0.75
Identities = 12/77 (15%), Positives = 24/77 (31%), Gaps = 6/77 (7%)
Query: 8 ILVTGASSGIGAATALHLAKLDAKLAITGRNVEQLNKVSESCQSVSKNKPL---VIQADL 64
IL+ G + IG K R + + + L +++ D+
Sbjct: 5 ILILGPTGAIGRHIVWASIKAGNPTYALVRKTITAANPETKEELIDNYQSLGVILLEGDI 64
Query: 65 TSEEDTKRI---IDTVV 78
E + +D V+
Sbjct: 65 NDHETLVKAIKQVDIVI 81
>3dje_A Fructosyl amine: oxygen oxidoreductase; fructosyl-amino acid,
amadoriase, deglycation, fructosamine oxidase; HET: MSE
FAD FSA EPE; 1.60A {Aspergillus fumigatus} PDB: 3djd_A*
Length = 438
Score = 30.2 bits (68), Expect = 0.77
Identities = 11/25 (44%), Positives = 15/25 (60%), Gaps = 3/25 (12%)
Query: 8 ILVTGASSGI-GAATALHLAKLDAK 31
+L+ GA G G +TALHLA+
Sbjct: 9 LLIVGA--GTWGTSTALHLARRGYT 31
Score = 27.5 bits (61), Expect = 5.3
Identities = 8/18 (44%), Positives = 11/18 (61%), Gaps = 1/18 (5%)
Query: 97 SGI-GAATALHLAKLDAK 113
+G G +TALHLA+
Sbjct: 14 AGTWGTSTALHLARRGYT 31
>1qyd_A Pinoresinol-lariciresinol reductase; NADPH-dependent aromatic
alcohol reductases, pcber, PLR, IFR, lignans,
isoflavonoids, plant protein; 2.50A {Thuja plicata}
SCOP: c.2.1.2
Length = 313
Score = 30.3 bits (68), Expect = 0.78
Identities = 17/84 (20%), Positives = 29/84 (34%), Gaps = 9/84 (10%)
Query: 1 MNFTGKVILVTGASSGIGAATALHLAKLDAKLAITGRNVEQLNKVSESCQSVSKNKPL-- 58
M+ +V L+ G + IG L + R N + Q + K L
Sbjct: 1 MDKKSRV-LIVGGTGYIGKRIVNASISLGHPTYVLFRPEVVSN--IDKVQMLLYFKQLGA 57
Query: 59 -VIQADLTSEEDTKRI---IDTVV 78
+I+A L + +D V+
Sbjct: 58 KLIEASLDDHQRLVDALKQVDVVI 81
>2jl1_A Triphenylmethane reductase; oxidoreductase, bioremediation; HET:
NAP GOL; 1.96A {Citrobacter SP} PDB: 2vrb_A* 2vrc_A
2vrc_D
Length = 287
Score = 29.9 bits (68), Expect = 0.79
Identities = 13/42 (30%), Positives = 22/42 (52%), Gaps = 2/42 (4%)
Query: 8 ILVTGASSGIGAATALHLAKLDA--KLAITGRNVEQLNKVSE 47
I VTGA+ +G HL K ++ RNVE+ + +++
Sbjct: 3 IAVTGATGQLGGLVIQHLLKKVPASQIIAIVRNVEKASTLAD 44
>2z5l_A Tylkr1, tylactone synthase starter module and modules 1 & 2;
short-chain dehydrogenase/reductase, rossman fold; 1.95A
{Streptomyces fradiae}
Length = 511
Score = 30.2 bits (68), Expect = 0.84
Identities = 12/30 (40%), Positives = 15/30 (50%), Gaps = 1/30 (3%)
Query: 9 LVTGASSGIGAATALHLAKLDAK-LAITGR 37
L+TG IG A LA A+ L +T R
Sbjct: 263 LITGGMGAIGRRLARRLAAEGAERLVLTSR 292
Score = 27.9 bits (62), Expect = 5.2
Identities = 11/29 (37%), Positives = 14/29 (48%), Gaps = 1/29 (3%)
Query: 92 VTGASSGIGAATALHLAKLDAK-LAITGR 119
+TG IG A LA A+ L +T R
Sbjct: 264 ITGGMGAIGRRLARRLAAEGAERLVLTSR 292
>2hrz_A AGR_C_4963P, nucleoside-diphosphate-sugar epimerase;
agrobacterium tumefa structural genomics, PSI-2,
protein structure initiative; 1.85A {Agrobacterium
tumefaciens}
Length = 342
Score = 30.0 bits (68), Expect = 0.84
Identities = 13/83 (15%), Positives = 30/83 (36%), Gaps = 3/83 (3%)
Query: 1 MNFTGKVILVTGASSGIGAATALHLAKLDAKLAITGRNVEQLNKVSESCQSVSKNKPLVI 60
+ F G I + GA+ +G L K + ++ +
Sbjct: 10 LYFQGMHIAIIGAAGMVGRKLTQRLVKDGSLGGKPVEKFTLIDVFQPEAPAGFSGAVDAR 69
Query: 61 QADLTSEEDTKRIID---TVVKH 80
ADL++ + +++++ V+ H
Sbjct: 70 AADLSAPGEAEKLVEARPDVIFH 92
>3mje_A AMPHB; rossmann fold, oxidoreductase; HET: NDP; 1.36A {Streptomyces
nodosus} PDB: 3mjc_A* 3mjs_A* 3mjv_A* 3mjt_A*
Length = 496
Score = 30.1 bits (68), Expect = 0.84
Identities = 14/30 (46%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
Query: 9 LVTGASSGIGAATALHLAKLDAK-LAITGR 37
LVTG + GIG A LA+ A L +T R
Sbjct: 243 LVTGGTGGIGGRVARRLAEQGAAHLVLTSR 272
Score = 27.8 bits (62), Expect = 4.7
Identities = 13/29 (44%), Positives = 16/29 (55%), Gaps = 1/29 (3%)
Query: 92 VTGASSGIGAATALHLAKLDAK-LAITGR 119
VTG + GIG A LA+ A L +T R
Sbjct: 244 VTGGTGGIGGRVARRLAEQGAAHLVLTSR 272
>1sb8_A WBPP; epimerase, 4-epimerase, UDP-galnac, UDP-GLCNAC, SDR, G SYK,
UDP, N-acetylglucosamine, N- acetylgalactosamine,
UDP-GLC, isomerase; HET: NAD UD2; 2.10A {Pseudomonas
aeruginosa} SCOP: c.2.1.2 PDB: 1sb9_A*
Length = 352
Score = 29.9 bits (68), Expect = 0.89
Identities = 22/86 (25%), Positives = 35/86 (40%), Gaps = 9/86 (10%)
Query: 1 MNFTGKVILVTGASSGIGAATALHLAKLDAKLAI-----TGRNVEQLNKVSESCQSVSKN 55
+ KV L+TG + IG+ L KLD K+ TG L++V +
Sbjct: 23 LPAQPKVWLITGVAGFIGSNLLETLLKLDQKVVGLDNFATGHQ-RNLDEVRSLVSEKQWS 81
Query: 56 KPLVIQADLTSEEDTKRI---IDTVV 78
IQ D+ + +D +D V+
Sbjct: 82 NFKFIQGDIRNLDDCNNACAGVDYVL 107
>1xq6_A Unknown protein; structural genomics, protein structure
initiative, CESG, AT5G02240, NADP, center for
eukaryotic structural genomics; HET: NAP; 1.80A
{Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1ybm_A*
2q46_A* 2q4b_A*
Length = 253
Score = 29.8 bits (67), Expect = 0.95
Identities = 18/78 (23%), Positives = 26/78 (33%), Gaps = 13/78 (16%)
Query: 6 KVILVTGASSGIGAATALHLAKLDAKLAITG--RNVEQLNKVSESCQSVSKNKPLVIQAD 63
+LVTGAS G L + K G R+ + K+ V D
Sbjct: 5 PTVLVTGASGRTGQIVYKKLKEGSDKFVAKGLVRSAQGKEKIGGEAD--------VFIGD 56
Query: 64 LTSEEDTKRI---IDTVV 78
+T + ID +V
Sbjct: 57 ITDADSINPAFQGIDALV 74
>3fbt_A Chorismate mutase and shikimate 5-dehydrogenase fusion protein;
structural genomics, oxidoreductase, amino-acid
biosynthesis; 2.10A {Clostridium acetobutylicum}
Length = 282
Score = 29.8 bits (68), Expect = 1.00
Identities = 15/66 (22%), Positives = 32/66 (48%), Gaps = 6/66 (9%)
Query: 2 NFTGKVILVTGASSGIGAATALH--LAKLDAK-LAITGRNVEQLNKVSESCQSVSKNKPL 58
+ +V G+ G GAA A+ L AK + + RN E+ +++ + +S ++
Sbjct: 119 EIKNNICVVLGS--G-GAARAVLQYLKDNFAKDIYVVTRNPEKTSEIYGEFKVISYDELS 175
Query: 59 VIQADL 64
++ D+
Sbjct: 176 NLKGDV 181
>3eya_A Pyruvate dehydrogenase [cytochrome]; pyruvate oxidase,
membrane-associated flavoprotein dehydrogenase,
interactions with lipids cell membrane; HET: TDP FAD;
2.50A {Escherichia coli} PDB: 3ey9_A*
Length = 549
Score = 30.2 bits (69), Expect = 1.0
Identities = 11/34 (32%), Positives = 18/34 (52%), Gaps = 6/34 (17%)
Query: 260 NPEEVAKAIAFLASDDASFTTGEHLTVDGGRHAM 293
+P+ +A+ I+ A+DDA FT D G +
Sbjct: 358 HPQYLAQQISHFAADDAIFTC------DVGTPTV 385
>4eye_A Probable oxidoreductase; structural genomics, niaid, national
institute of allergy AN infectious diseases; 2.10A
{Mycobacterium abscessus}
Length = 342
Score = 29.9 bits (68), Expect = 1.0
Identities = 12/24 (50%), Positives = 17/24 (70%), Gaps = 1/24 (4%)
Query: 5 GKVILVTGASSGIGAATALHLAKL 28
G+ +LV GA+ GIG A A+ +AK
Sbjct: 160 GETVLVLGAAGGIGTA-AIQIAKG 182
>2uv9_A Fatty acid synthase alpha subunits; fungal, dehydratase, enoyl
reductase, ketoacyl synthase, ketoacyl reductase; 3.1A
{Thermomyces lanuginosus} PDB: 2uvb_A*
Length = 1878
Score = 30.3 bits (68), Expect = 1.0
Identities = 22/80 (27%), Positives = 40/80 (50%), Gaps = 9/80 (11%)
Query: 3 FTGKVILVTGASSG-IGAATALHLAKLDAKLAITGRNVEQLNKVSESCQSV-----SKNK 56
F GK L+TGA +G IGA L AK+ +T + +V+E Q + ++
Sbjct: 650 FQGKHALMTGAGAGSIGAEVLQGLLSGGAKVIVTTSRFSR--QVTEYYQGIYARCGARGS 707
Query: 57 PL-VIQADLTSEEDTKRIID 75
L V+ + S++D + +++
Sbjct: 708 QLVVVPFNQGSKQDVEALVN 727
>3dhn_A NAD-dependent epimerase/dehydratase; reductase, PF01370,
Q89Z24_bactn, NESG, BTR310, structural genomics, PSI-2;
2.00A {Bacteroides thetaiotaomicron}
Length = 227
Score = 29.3 bits (66), Expect = 1.2
Identities = 18/78 (23%), Positives = 36/78 (46%), Gaps = 15/78 (19%)
Query: 6 KVILVTGASSGIGAATALHLAKLDAKLAITG--RNVEQLNKVSESCQSVSKNKPLVIQAD 63
K I++ GAS +G+A L+ +T R+ E++ +E + V +AD
Sbjct: 5 KKIVLIGASGFVGSALLNEA--LNRGFEVTAVVRHPEKIKIENEHLK--------VKKAD 54
Query: 64 LTSEEDTKRII---DTVV 78
++S ++ + D V+
Sbjct: 55 VSSLDEVCEVCKGADAVI 72
Score = 27.7 bits (62), Expect = 3.7
Identities = 26/173 (15%), Positives = 54/173 (31%), Gaps = 49/173 (28%)
Query: 91 AVTGASSGIGAATALHLAKLDAKLAITG--RNVEQLNKVSESCQSVSKNKPLVIQADLTS 148
+ GAS +G+A L+ +T R+ E++ +E + V +AD++S
Sbjct: 8 VLIGASGFVGSALLNEA--LNRGFEVTAVVRHPEKIKIENEHLK--------VKKADVSS 57
Query: 149 EEDTKRII---DTVV-------KHYQKLNVLVNNAGNIVN------------VSSVNGLR 186
++ + D V+ + + + I++ V L
Sbjct: 58 LDEVCEVCKGADAVISAFNPGWNNPDIYDETIKVYLTIIDGVKKAGVNRFLMVGGAGSLF 117
Query: 187 SFPGVL----------AYCVSKAAVDQFTSCTALELAS-KGVRVNSVNPGVTL 228
PG+ KA + + L K + +P +
Sbjct: 118 IAPGLRLMDSGEVPENILPGVKALGEFY----LNFLMKEKEIDWVFFSPAADM 166
>3e48_A Putative nucleoside-diphosphate-sugar epimerase; alpha-beta
protein., structural genomics, PSI-2, protein STR
initiative; 1.60A {Staphylococcus aureus subsp}
Length = 289
Score = 29.6 bits (67), Expect = 1.2
Identities = 10/36 (27%), Positives = 16/36 (44%), Gaps = 1/36 (2%)
Query: 8 ILVTGASSGIGAATALHLAKLDA-KLAITGRNVEQL 42
I++TGA+ +G I RNVE++
Sbjct: 3 IMLTGATGHLGTHITNQAIANHIDHFHIGVRNVEKV 38
>3qp9_A Type I polyketide synthase pikaii; rossmann fold, ketoreductase,
epimerization, oxidoreductase; 1.88A {Streptomyces
venezuelae}
Length = 525
Score = 29.4 bits (66), Expect = 1.4
Identities = 11/30 (36%), Positives = 13/30 (43%), Gaps = 1/30 (3%)
Query: 9 LVTGASSGIGAATALHLAKLDAK-LAITGR 37
LVTGA A A LA+ A L +
Sbjct: 255 LVTGAEEPAAAEAARRLARDGAGHLLLHTT 284
Score = 27.1 bits (60), Expect = 8.8
Identities = 10/29 (34%), Positives = 12/29 (41%), Gaps = 1/29 (3%)
Query: 92 VTGASSGIGAATALHLAKLDAK-LAITGR 119
VTGA A A LA+ A L +
Sbjct: 256 VTGAEEPAAAEAARRLARDGAGHLLLHTT 284
>3rft_A Uronate dehydrogenase; apoenzyme, rossmann fold, NAD binding,
oxidoreductase; 1.90A {Agrobacterium tumefaciens} PDB:
3rfv_A* 3rfx_A*
Length = 267
Score = 29.2 bits (66), Expect = 1.5
Identities = 16/78 (20%), Positives = 29/78 (37%), Gaps = 13/78 (16%)
Query: 4 TGKVILVTGASSGIGAATALHLAKLDAKLAITGRNVEQLNKVSESCQSVSKNKPLVIQAD 63
K +LVTGA+ +G LA + L + ++ L+ + + +Q D
Sbjct: 2 AMKRLLVTGAAGQLGRVMRERLAPMAEILRLA--DLSPLDPAGPNEE--------CVQCD 51
Query: 64 LTSEEDTKRI---IDTVV 78
L + D +V
Sbjct: 52 LADANAVNAMVAGCDGIV 69
>4a27_A Synaptic vesicle membrane protein VAT-1 homolog-L; oxidoreductase;
2.10A {Homo sapiens}
Length = 349
Score = 29.1 bits (66), Expect = 1.6
Identities = 8/32 (25%), Positives = 11/32 (34%), Gaps = 2/32 (6%)
Query: 5 GKVILVTGASSGIGAATALHLAK-LDAKLAIT 35
G +LV A G+G A L +
Sbjct: 143 GMSVLVHSAGGGVGQA-VAQLCSTVPNVTVFG 173
>2uv8_A Fatty acid synthase subunit alpha (FAS2); fatty acid biosynthesis,
malonyl/palmitoyl transferase, phosphopantetheine,
transferase; HET: GVL FMN; 3.10A {Saccharomyces
cerevisiae} PDB: 2vkz_A* 3hmj_A*
Length = 1887
Score = 29.6 bits (66), Expect = 1.7
Identities = 23/80 (28%), Positives = 41/80 (51%), Gaps = 9/80 (11%)
Query: 3 FTGKVILVTGASSG-IGAATALHLAKLDAKLAITGRNVEQLNKVSESCQSV-----SKNK 56
F K +L+TGA G IGA L + AK+ +T + +V++ QS+ +K
Sbjct: 673 FKDKYVLITGAGKGSIGAEVLQGLLQGGAKVVVTTSRFSK--QVTDYYQSIYAKYGAKGS 730
Query: 57 PL-VIQADLTSEEDTKRIID 75
L V+ + S++D + +I+
Sbjct: 731 TLIVVPFNQGSKQDVEALIE 750
>2eih_A Alcohol dehydrogenase; zinc ION binding protein, structural
genomics, NPPSFA, natio project on protein structural
and functional analyses; 2.30A {Thermus thermophilus}
Length = 343
Score = 29.1 bits (66), Expect = 1.8
Identities = 13/44 (29%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
Query: 5 GKVILVTGASSGIGAATALHLAK-LDAKLAITGRNVEQLNKVSE 47
G +LV A SG+ A A+ +AK A++ T + ++L +
Sbjct: 167 GDDVLVMAAGSGVSVA-AIQIAKLFGARVIATAGSEDKLRRAKA 209
>3iup_A Putative NADPH:quinone oxidoreductase; YP_296108.1, structur
genomics, joint center for structural genomics, JCSG,
prote structure initiative; HET: MSE NDP; 1.70A
{Ralstonia eutropha}
Length = 379
Score = 28.7 bits (64), Expect = 2.1
Identities = 10/37 (27%), Positives = 14/37 (37%)
Query: 5 GKVILVTGASSGIGAATALHLAKLDAKLAITGRNVEQ 41
++ T A+S +G K KL R EQ
Sbjct: 172 HSALVHTAAASNLGQMLNQICLKDGIKLVNIVRKQEQ 208
>3nzo_A UDP-N-acetylglucosamine 4,6-dehydratase; structural genomics,
PSI-2, protein structure initiative, MI center for
structural genomics, MCSG, NAD; HET: MSE NAD; 2.10A
{Vibrio fischeri} PDB: 3pvz_A*
Length = 399
Score = 28.9 bits (65), Expect = 2.1
Identities = 7/30 (23%), Positives = 12/30 (40%)
Query: 2 NFTGKVILVTGASSGIGAATALHLAKLDAK 31
+ LV G + IG A + K + +
Sbjct: 32 VVSQSRFLVLGGAGSIGQAVTKEIFKRNPQ 61
>4a0s_A Octenoyl-COA reductase/carboxylase; oxidoreductase, transferase,
cinnabaramide PKS biosynthesis; HET: CO8 NAP; 1.90A
{Streptomyces SP} PDB: 4a10_A
Length = 447
Score = 29.0 bits (65), Expect = 2.1
Identities = 9/24 (37%), Positives = 15/24 (62%), Gaps = 1/24 (4%)
Query: 5 GKVILVTGASSGIGAATALHLAKL 28
G ++L+ GAS G+G+ A+ K
Sbjct: 221 GDIVLIWGASGGLGSY-AIQFVKN 243
>1qyc_A Phenylcoumaran benzylic ether reductase PT1; NADPH-dependent
aromatic alcohol reductases, pcber, PLR, IFR, lignans,
isoflavonoids, plant protein; 2.20A {Pinus taeda} SCOP:
c.2.1.2
Length = 308
Score = 28.7 bits (64), Expect = 2.3
Identities = 14/83 (16%), Positives = 25/83 (30%), Gaps = 19/83 (22%)
Query: 8 ILVTGASSGIGAATALHLAKLDAKLAITGRNVEQLNKVSESCQSVSKNKPL--------- 58
IL+ GA+ IG A G L + S + + K + L
Sbjct: 7 ILLIGATGYIGRHVAKASLD-------LGHPTFLLVRESTASSNSEKAQLLESFKASGAN 59
Query: 59 VIQADLTSEEDTKRI---IDTVV 78
++ + +D V+
Sbjct: 60 IVHGSIDDHASLVEAVKNVDVVI 82
>3vlv_A ALGQ1; sugar binding protein, alginate; HET: MAW LGU; 1.50A
{Sphingomonas SP} PDB: 3vlu_A* 3vlw_A* 1y3n_A* 1y3p_A*
1y3q_A 1j1n_A* 1kwh_A
Length = 502
Score = 28.7 bits (64), Expect = 2.3
Identities = 7/37 (18%), Positives = 10/37 (27%), Gaps = 5/37 (13%)
Query: 260 NPEEVAKAIAFLASDDASFTT-----GEHLTVDGGRH 291
NP E K F + G + G+
Sbjct: 325 NPVETIKLFDFYFGPKGRELSNFGVPGLTYDIKNGKP 361
>2r6j_A Eugenol synthase 1; phenylpropene, PIP reductase, short-chain
dehydrogenase/reductase, plant protein; HET: NDP; 1.50A
{Ocimum basilicum} PDB: 2qys_A 2qx7_A* 2qzz_A* 2r2g_A*
3c3x_A* 2qw8_A*
Length = 318
Score = 28.7 bits (64), Expect = 2.3
Identities = 12/74 (16%), Positives = 25/74 (33%), Gaps = 6/74 (8%)
Query: 8 ILVTGASSGIGAATALHLAKLDAKLAITGRNVEQLNKVSESCQSVSKNKPLVIQADLTSE 67
IL+ G + IG KL + R + + ++++ +L
Sbjct: 14 ILIFGGTGYIGNHMVKGSLKLGHPTYVFTRPN---SSKTTLLDEFQSLGAIIVKGELDEH 70
Query: 68 EDTKRI---IDTVV 78
E + +D V+
Sbjct: 71 EKLVELMKKVDVVI 84
>3krt_A Crotonyl COA reductase; structural genomics, protein structure
initiative, NYSGXRC, PSI-2; 2.19A {Streptomyces
coelicolor} PDB: 3hzz_A
Length = 456
Score = 28.6 bits (64), Expect = 2.4
Identities = 9/24 (37%), Positives = 13/24 (54%), Gaps = 1/24 (4%)
Query: 5 GKVILVTGASSGIGAATALHLAKL 28
G +L+ GAS G+G+ A A
Sbjct: 229 GDNVLIWGASGGLGSY-ATQFALA 251
>2c0c_A Zinc binding alcohol dehydrogenase, domain containing 2;
oxidoreductase, quinone oxidoreductase, medium-chain
dehydrogenase/reductase; HET: NAP; 1.45A {Homo sapiens}
PDB: 2x1h_A* 2x7h_A* 2wek_A*
Length = 362
Score = 28.8 bits (65), Expect = 2.5
Identities = 11/24 (45%), Positives = 15/24 (62%), Gaps = 1/24 (4%)
Query: 5 GKVILVTGASSGIGAATALHLAKL 28
GK +LVT A+ G G A+ L+K
Sbjct: 164 GKKVLVTAAAGGTG-QFAMQLSKK 186
>1ek6_A UDP-galactose 4-epimerase; short-chain dehydrogenase,
galactosemia, isomerase; HET: NAI UPG; 1.50A {Homo
sapiens} SCOP: c.2.1.2 PDB: 1ek5_A* 1hzj_A* 1i3k_A*
1i3l_A* 1i3m_A* 1i3n_A*
Length = 348
Score = 28.6 bits (65), Expect = 2.6
Identities = 14/85 (16%), Positives = 29/85 (34%), Gaps = 11/85 (12%)
Query: 5 GKVILVTGASSGIGAATALHLAKLDAKLAI--TGRNVEQLNKVSESC----QSVSKNKPL 58
+ +LVTG + IG+ T L L + + N + Q ++
Sbjct: 2 AEKVLVTGGAGYIGSHTVLELLEAGYLPVVIDNFHNAFRGGGSLPESLRRVQELTGRSVE 61
Query: 59 VIQADLTSEEDTKRI-----IDTVV 78
+ D+ + +R+ V+
Sbjct: 62 FEEMDILDQGALQRLFKKYSFMAVI 86
>2zcu_A Uncharacterized oxidoreductase YTFG; alpha-beta sandwich; 1.80A
{Escherichia coli} PDB: 2zcv_A*
Length = 286
Score = 28.4 bits (64), Expect = 2.9
Identities = 9/38 (23%), Positives = 17/38 (44%), Gaps = 2/38 (5%)
Query: 7 VILVTGASSGIGAATALHLAKL--DAKLAITGRNVEQL 42
+I +TGA+ +G L K +++ RN +
Sbjct: 1 MIAITGATGQLGHYVIESLMKTVPASQIVAIVRNPAKA 38
>3ay3_A NAD-dependent epimerase/dehydratase; glucuronic acid
dehydrogeanse, oxidoreductase; 2.10A {Chromohalobacter
salexigens}
Length = 267
Score = 28.1 bits (63), Expect = 3.3
Identities = 15/79 (18%), Positives = 30/79 (37%), Gaps = 23/79 (29%)
Query: 8 ILVTGASSGIGAATALHLAKLDAKLAI-----TGRNVEQLNKVSESCQSVSKNKPLVIQA 62
+LVTGA+ G+G+A HL L ++ + G ++ ++
Sbjct: 5 LLVTGAAGGVGSAIRPHLGTLAHEVRLSDIVDLGA---------------AEAHEEIVAC 49
Query: 63 DLTSEEDTKRI---IDTVV 78
DL + + D ++
Sbjct: 50 DLADAQAVHDLVKDCDGII 68
>3slk_A Polyketide synthase extender module 2; rossmann fold, NADPH,
oxidoreductase; HET: NDP; 3.00A {Saccharopolyspora
spinosa}
Length = 795
Score = 28.5 bits (64), Expect = 3.5
Identities = 16/91 (17%), Positives = 35/91 (38%), Gaps = 17/91 (18%)
Query: 4 TGKVI-------------LVTGASSGIGAATALHLA-KLDAK-LAITGRNVEQLNKVSES 48
GK++ LVTG + +GA A HL + + L + R + +E
Sbjct: 516 VGKLVLTMPPVWDAAGTVLVTGGTGALGAEVARHLVIERGVRNLVLVSRRGPAASGAAEL 575
Query: 49 CQSVSKN--KPLVIQADLTSEEDTKRIIDTV 77
++ + + D+ E +++ ++
Sbjct: 576 VAQLTAYGAEVSLQACDVADRETLAKVLASI 606
>2nn6_C Exosome complex exonuclease RRP43; RNA, exosome, PM/SCL,
phosphorolytic, hydrolase/transferase complex; 3.35A
{Homo sapiens} SCOP: d.14.1.4 d.101.1.1
Length = 278
Score = 28.0 bits (62), Expect = 3.5
Identities = 18/118 (15%), Positives = 44/118 (37%), Gaps = 15/118 (12%)
Query: 90 NAVTGASSGIGAA---TALHLAKLDAKLAITGRNVEQLNKVSES----CQSVSKNKPLVI 142
N + + + AA L ++ + A+ N+++ + ++ S + ++
Sbjct: 149 NILDACTFALLAALKNVQLPEVTINEETALAEVNLKKKSYLNIRTHPVATSFAVFDDTLL 208
Query: 143 QADLTSEEDTKRIIDTVVKHYQKLNVLVNNAGNIVNVSSVNGLRSFPGVLAYCVSKAA 200
D T EE+ + L ++++ G + + G L C+S+A
Sbjct: 209 IVDPTGEEE--HLATG------TLTIVMDEEGKLCCLHKPGGSGLTGAKLQDCMSRAV 258
>1yb5_A Quinone oxidoreductase; medium-chain dehydrogenase/reductase,
quinon reduction, structural genomics, structural
genomics consort; HET: NAP; 1.85A {Homo sapiens} SCOP:
b.35.1.2 c.2.1.1
Length = 351
Score = 27.9 bits (63), Expect = 3.7
Identities = 13/32 (40%), Positives = 19/32 (59%), Gaps = 2/32 (6%)
Query: 5 GKVILVTGASSGIGAATALHLAK-LDAKLAIT 35
G+ +LV GAS G+G A A +A+ K+ T
Sbjct: 171 GESVLVHGASGGVGLA-ACQIARAYGLKILGT 201
>1y56_B Sarcosine oxidase; dehydrogenase, protein-protein complex,
oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus
horikoshii}
Length = 382
Score = 27.9 bits (63), Expect = 4.1
Identities = 7/24 (29%), Positives = 8/24 (33%), Gaps = 7/24 (29%)
Query: 16 GIGAATALHLAKLDAKLAITGRNV 39
+G A LAK G V
Sbjct: 15 IVGVTIAHELAKR-------GEEV 31
Score = 27.9 bits (63), Expect = 4.1
Identities = 7/24 (29%), Positives = 8/24 (33%), Gaps = 7/24 (29%)
Query: 98 GIGAATALHLAKLDAKLAITGRNV 121
+G A LAK G V
Sbjct: 15 IVGVTIAHELAKR-------GEEV 31
>2uzz_A N-methyl-L-tryptophan oxidase; N-methyltryptophan oxidase (MTOX),
oxidative demethylation of N-methyl-L-tryptophan, FAD,
flavoenzyme; HET: FAD; 3.2A {Escherichia coli}
Length = 372
Score = 27.7 bits (62), Expect = 4.6
Identities = 5/22 (22%), Positives = 11/22 (50%), Gaps = 3/22 (13%)
Query: 8 ILVTGASSGI-GAATALHLAKL 28
+++ G+ G GAA + +
Sbjct: 5 LIIIGS--GSVGAAAGYYATRA 24
Score = 26.9 bits (60), Expect = 7.9
Identities = 5/21 (23%), Positives = 9/21 (42%), Gaps = 3/21 (14%)
Query: 91 AVTGASSGI-GAATALHLAKL 110
+ G+ G GAA + +
Sbjct: 6 IIIGS--GSVGAAAGYYATRA 24
>2oln_A NIKD protein; flavoprotein, rossmann fold, oxidoreductase; HET:
FAD; 1.15A {Streptomyces tendae} PDB: 2olo_A* 3hzl_A*
2q6u_A*
Length = 397
Score = 27.8 bits (62), Expect = 4.6
Identities = 8/21 (38%), Positives = 12/21 (57%), Gaps = 3/21 (14%)
Query: 8 ILVTGASSGI-GAATALHLAK 27
++V G G G ATA +A+
Sbjct: 7 VVVVGG--GPVGLATAWQVAE 25
Score = 27.0 bits (60), Expect = 7.2
Identities = 8/20 (40%), Positives = 10/20 (50%), Gaps = 3/20 (15%)
Query: 91 AVTGASSGI-GAATALHLAK 109
V G G G ATA +A+
Sbjct: 8 VVVGG--GPVGLATAWQVAE 25
>3c1o_A Eugenol synthase; phenylpropene, PIP reductase, short-chain
dehydrogenase/reductase, oxidoreductase; HET: NAP;
1.80A {Clarkia breweri}
Length = 321
Score = 27.6 bits (61), Expect = 5.0
Identities = 12/79 (15%), Positives = 27/79 (34%), Gaps = 7/79 (8%)
Query: 6 KVILVTGASSGIGAATALHLAKLDAKLAITGRNVEQLNKVSESCQSVSKNKPL---VIQA 62
+ I++ G + IG I R + S Q + + + +I+
Sbjct: 5 EKIIIYGGTGYIGKFMVRASLSFSHPTFIYARP-LTPDSTPSSVQLREEFRSMGVTIIEG 63
Query: 63 DLTSEEDTKRI---IDTVV 78
++ E + +D V+
Sbjct: 64 EMEEHEKMVSVLKQVDIVI 82
>2vz8_A Fatty acid synthase; transferase, phosphopantetheine, multienzyme,
megasynthase, fatty acid synthesis; 3.2A {Sus scrofa}
PDB: 2vz9_A*
Length = 2512
Score = 27.9 bits (62), Expect = 5.7
Identities = 11/34 (32%), Positives = 15/34 (44%), Gaps = 1/34 (2%)
Query: 5 GKVILVTGASSGIGAATALHLAKLDAK-LAITGR 37
K ++TG G G A L A+ L +T R
Sbjct: 1884 HKSYVITGGLGGFGLQLAQWLRLRGAQKLVLTSR 1917
>3gms_A Putative NADPH:quinone reductase; structural genomics, putative
quinone oxidoreductase, unknown function, PSI-2; 1.76A
{Bacillus thuringiensis}
Length = 340
Score = 27.5 bits (62), Expect = 6.0
Identities = 7/24 (29%), Positives = 11/24 (45%), Gaps = 1/24 (4%)
Query: 5 GKVILVTGASSGIGAATALHLAKL 28
V+LV S IG L+++
Sbjct: 145 NDVLLVNACGSAIGHL-FAQLSQI 167
>2c29_D Dihydroflavonol 4-reductase; flavonoids, short dehydrogenase
reductase, NADPH, dihydroquercetin, rossmann fold,
oxidoreductase; HET: NAP DQH; 1.81A {Vitis vinifera}
PDB: 2iod_A* 2nnl_D* 3bxx_A* 3c1t_A*
Length = 337
Score = 27.2 bits (61), Expect = 6.0
Identities = 17/73 (23%), Positives = 25/73 (34%), Gaps = 9/73 (12%)
Query: 1 MNFTGKVILVTGASSGIGAATALHLAK--LDAKLAITG--RNVEQLNKVSESCQSVSKNK 56
M + + VTGAS I L L+ + R+ + KV
Sbjct: 1 MGSQSETVCVTGASGFI----GSWLVMRLLERGYTVRATVRDPTNVKKVKHLLDLPKAET 56
Query: 57 PL-VIQADLTSEE 68
L + +ADL E
Sbjct: 57 HLTLWKADLADEG 69
>3cio_A ETK, tyrosine-protein kinase ETK; WZC, escherichia coli tyrosine
kinase domain, signaling protein, transferase, inner
membrane, membrane; 2.50A {Escherichia coli}
Length = 299
Score = 27.3 bits (61), Expect = 6.2
Identities = 9/35 (25%), Positives = 18/35 (51%), Gaps = 4/35 (11%)
Query: 6 KVILVTGASSGIGAAT-ALHLAKLDAKLAITGRNV 39
++++TGA+ G + LA A +A + + V
Sbjct: 105 NILMITGATPDSGKTFVSSTLA---AVIAQSDQKV 136
>3omb_A Extracellular solute-binding protein, family 1; PSI-2, midwest
center for structural genomics, protein struc
initiative, MCSG; 2.10A {Bifidobacterium longum subsp}
Length = 535
Score = 27.6 bits (61), Expect = 6.2
Identities = 8/35 (22%), Positives = 12/35 (34%), Gaps = 5/35 (14%)
Query: 260 NPEEVAKAIAFLASDDASFTT-----GEHLTVDGG 289
N + K L S+ S G+ +T G
Sbjct: 362 NKDAALKLANLLYSEKYSVQQFLGSFGKAITKTGE 396
>2rh8_A Anthocyanidin reductase; flavonoids, rossmann fold, short chain
dehydrogenase/reductase, oxidoreductase; 2.22A {Vitis
vinifera} PDB: 3hfs_A
Length = 338
Score = 27.2 bits (61), Expect = 6.3
Identities = 18/69 (26%), Positives = 26/69 (37%), Gaps = 8/69 (11%)
Query: 4 TGKVILVTGASSGIGAATALHLAK--LDAKLAI--TGRNVEQLNKVSESCQSVSKNKPLV 59
K V G + + A L K L A+ T R+ + KVS + +
Sbjct: 8 GKKTACVVGGTGFV----ASLLVKLLLQKGYAVNTTVRDPDNQKKVSHLLELQELGDLKI 63
Query: 60 IQADLTSEE 68
+ADLT E
Sbjct: 64 FRADLTDEL 72
>1ryi_A Glycine oxidase; flavoprotein, protein-inhibitor complex,
oxidoreductase; HET: FAD; 1.80A {Bacillus subtilis}
SCOP: c.3.1.2 d.16.1.3 PDB: 3if9_A* 1ng4_A* 1ng3_A*
Length = 382
Score = 27.2 bits (61), Expect = 6.4
Identities = 10/32 (31%), Positives = 14/32 (43%), Gaps = 8/32 (25%)
Query: 8 ILVTGASSGIGAATALHLAKLDAKLAITGRNV 39
+V G IG+A A +LAK +N
Sbjct: 20 AVVIGGG-IIGSAIAYYLAKE-------NKNT 43
Score = 27.2 bits (61), Expect = 7.9
Identities = 8/24 (33%), Positives = 11/24 (45%), Gaps = 7/24 (29%)
Query: 98 GIGAATALHLAKLDAKLAITGRNV 121
IG+A A +LAK +N
Sbjct: 27 IIGSAIAYYLAKE-------NKNT 43
>3gqv_A Enoyl reductase; medium-chain reductase (MDR superfamily), rossmann
fold, NAD binding, oxidoreductase; HET: NAP; 1.74A
{Aspergillus terreus} PDB: 3b6z_A* 3b70_A*
Length = 371
Score = 27.0 bits (60), Expect = 7.7
Identities = 5/25 (20%), Positives = 10/25 (40%), Gaps = 1/25 (4%)
Query: 4 TGKVILVTGASSGIGAATALHLAKL 28
+LV G S+ + + +L
Sbjct: 164 KPVYVLVYGGSTATATV-TMQMLRL 187
>3r6d_A NAD-dependent epimerase/dehydratase; structural genomics,
PSI-biology, midwest center for structu genomics, MCSG,
veillo parvula; HET: MLZ; 1.25A {Veillonella parvula
dsm 2008} PDB: 3r14_A*
Length = 221
Score = 26.9 bits (59), Expect = 8.0
Identities = 11/75 (14%), Positives = 26/75 (34%), Gaps = 8/75 (10%)
Query: 8 ILVTGASSGIGAATALHL-AKLDAKLAITGRNVEQLNKVSESCQSVSKNKPLVIQADLTS 66
I + GA+ I L D + + GR ++ + + + VI+ +
Sbjct: 8 ITILGAAGQIAQXLTATLLTYTDMHITLYGRQLKTRIPP----EIIDHERVTVIEGSFQN 63
Query: 67 EEDTKRII---DTVV 78
++ + + V
Sbjct: 64 PGXLEQAVTNAEVVF 78
>3qvo_A NMRA family protein; structural genomics, PSI-biology, midwest
center for structu genomics, MCSG, unknown function;
HET: MNB; 2.30A {Shigella flexneri 2A}
Length = 236
Score = 26.7 bits (59), Expect = 8.3
Identities = 14/75 (18%), Positives = 24/75 (32%), Gaps = 11/75 (14%)
Query: 8 ILVTGASSGIGAATALHLA-KLDAKLAITGRNVEQLNKVSESCQSVSKNKPLVIQADLTS 66
+L+ GA I LA K K + R ++ +I D+ +
Sbjct: 26 VLILGAGGQIARHVINQLADKQTIKQTLFARQPAKI-------HKPYPTNSQIIMGDVLN 78
Query: 67 EEDTKRII---DTVV 78
K+ + D V
Sbjct: 79 HAALKQAMQGQDIVY 93
>2nn6_A Polymyositis/scleroderma autoantigen 1; RNA, exosome, PM/SCL,
phosphorolytic, hydrolase/transferase complex; 3.35A
{Homo sapiens} SCOP: d.14.1.4 d.101.1.1
Length = 358
Score = 26.9 bits (59), Expect = 8.5
Identities = 14/75 (18%), Positives = 23/75 (30%), Gaps = 22/75 (29%)
Query: 144 ADLTSEEDTKRIIDTVVKHYQKLNVLVNNAGNIVNVSSVNGLRSFPGVLAYCVSKAAVDQ 203
D E+ R++D L + +N I + S +G DQ
Sbjct: 224 VDPNEREE--RVMDG------LLVIAMNKHREICTIQS-SGGIMLLK-----------DQ 263
Query: 204 FTSCTALELASKGVR 218
C ++A V
Sbjct: 264 VLRC--SKIAGVKVA 276
>3la6_A Tyrosine-protein kinase WZC; P-loop protein, nucleotide binding
domain, walker A motif, B protein kinase,
oligomerization; HET: ADP; 3.20A {Escherichia coli}
Length = 286
Score = 26.9 bits (60), Expect = 8.6
Identities = 11/35 (31%), Positives = 18/35 (51%), Gaps = 4/35 (11%)
Query: 6 KVILVTGASSGIGAAT-ALHLAKLDAKLAITGRNV 39
V+++TG S IG +LA A ++ T + V
Sbjct: 93 NVLMMTGVSPSIGMTFVCANLA---AVISQTNKRV 124
>2gf3_A MSOX, monomeric sarcosine oxidase; flavoprotein oxidase,
inhibitor 2-furoic acid, oxidoreductas; HET: FAD; 1.30A
{Bacillus SP} SCOP: c.3.1.2 d.16.1.3 PDB: 1el7_A*
1el8_A* 1el9_A* 1eli_A* 1l9e_A* 2a89_A* 2gb0_A* 1el5_A*
3qse_A* 3qsm_A* 3qss_A* 3bhk_A* 3bhf_A* 3m12_A* 3m13_A*
3m0o_A* 1l9c_A* 1l9d_A* 1zov_A*
Length = 389
Score = 26.9 bits (60), Expect = 9.6
Identities = 9/22 (40%), Positives = 11/22 (50%), Gaps = 3/22 (13%)
Query: 8 ILVTGASSGI-GAATALHLAKL 28
++V GA G G A LAK
Sbjct: 6 VIVVGA--GSMGMAAGYQLAKQ 25
>3gaz_A Alcohol dehydrogenase superfamily protein; oxidoreductase, PSI-II,
alcohol dehydrogenase superf structural genomics; 1.96A
{Novosphingobium aromaticivorans}
Length = 343
Score = 26.8 bits (60), Expect = 9.6
Identities = 10/34 (29%), Positives = 18/34 (52%), Gaps = 2/34 (5%)
Query: 5 GKVILVTGASSGIGAATALHLAK-LDAKLAITGR 37
G+ +L+ G G+G A+ +A A++ T R
Sbjct: 151 GQTVLIQGGGGGVG-HVAIQIALARGARVFATAR 183
>3bfv_A CAPA1, CAPB2, membrane protein CAPA1, protein tyrosine kinase;
chimerical protein, P-loop protein, capsule
biogenesis/degradation; HET: ADP; 1.80A {Staphylococcus
aureus} PDB: 2ved_A*
Length = 271
Score = 26.4 bits (59), Expect = 9.7
Identities = 9/35 (25%), Positives = 15/35 (42%), Gaps = 4/35 (11%)
Query: 6 KVILVTGASSGIG-AATALHLAKLDAKLAITGRNV 39
+ I++T + G G + A +LA A G
Sbjct: 83 QSIVITSEAPGAGKSTIAANLA---VAYAQAGYKT 114
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.313 0.127 0.346
Gapped
Lambda K H
0.267 0.0850 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,158,538
Number of extensions: 243824
Number of successful extensions: 2233
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1581
Number of HSP's successfully gapped: 711
Length of query: 296
Length of database: 6,701,793
Length adjustment: 93
Effective length of query: 203
Effective length of database: 4,105,140
Effective search space: 833343420
Effective search space used: 833343420
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 57 (25.5 bits)