BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy15126
(300 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2Z1B|A Chain A, Crystal Structure Of 5-Aminolevulinic Acid Dehydratase
(Alad) From Mus Musculs
pdb|2Z1B|B Chain B, Crystal Structure Of 5-Aminolevulinic Acid Dehydratase
(Alad) From Mus Musculs
pdb|2Z1B|C Chain C, Crystal Structure Of 5-Aminolevulinic Acid Dehydratase
(Alad) From Mus Musculs
pdb|2Z1B|D Chain D, Crystal Structure Of 5-Aminolevulinic Acid Dehydratase
(Alad) From Mus Musculs
Length = 330
Score = 266 bits (680), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 128/296 (43%), Positives = 177/296 (59%), Gaps = 52/296 (17%)
Query: 4 RDETASFADTPDNPLFQVIPMIRKQFPSLTIACDVCLCGYTSHGHCAIFNEDGSIHYEKT 63
+DE S AD+ D+P + + ++RK FPSL +ACDVCLC YTSHGHC + +E+G+ E++
Sbjct: 87 KDEQGSAADSEDSPTIEAVRLLRKTFPSLLVACDVCLCPYTSHGHCGLLSENGAFLSEES 146
Query: 64 LKRLADISKAFSDAGAHIVAPSDMMDNRIHAIKQSLFTSRQSSTTGLLSYSAKFCSAFYG 123
+RLA+++ A++ AG +VAPSDMMD R+ AIK +L + ++SYSAKF S FYG
Sbjct: 147 RQRLAEVALAYAKAGCQVVAPSDMMDGRVEAIKAALLKHGLGNRVSVMSYSAKFASCFYG 206
Query: 124 PFREAAGSAPTFGDRSCYQLPCGSKGLAIRAAVCLCGYTSHGHCAIFNEDGSIHYEKTLK 183
PFR+AA S+P FGDR CYQLP G++GLA+RA
Sbjct: 207 PFRDAAQSSPAFGDRRCYQLPPGARGLALRAV---------------------------- 238
Query: 184 RLADISKAFSDAVYVPNHNTDRFQARDVSQGADFLMVKPALPYLDIISEVKSRHPAYPLF 243
ARD+ +GAD LMVKP LPYLD++ EVK +HP PL
Sbjct: 239 ------------------------ARDIQEGADMLMVKPGLPYLDMVREVKDKHPELPLA 274
Query: 244 VYQVSGEYXXXXXXXXXXXXXXKRALMETLTCLRRGGADVIISYYTPRVLEWLRED 299
VYQVSGE+ + A++ET+T RR GAD+II+Y+ P++L+WL+E+
Sbjct: 275 VYQVSGEFAMLWHGAQAGAFDLRTAVLETMTAFRRAGADIIITYFAPQLLKWLKEE 330
>pdb|1PV8|A Chain A, Crystal Structure Of A Low Activity F12l Mutant Of Human
Porphobilinogen Synthase
pdb|1PV8|B Chain B, Crystal Structure Of A Low Activity F12l Mutant Of Human
Porphobilinogen Synthase
Length = 330
Score = 263 bits (671), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 129/296 (43%), Positives = 177/296 (59%), Gaps = 52/296 (17%)
Query: 4 RDETASFADTPDNPLFQVIPMIRKQFPSLTIACDVCLCGYTSHGHCAIFNEDGSIHYEKT 63
+DE S AD+ ++P + I ++RK FP+L +ACDVCLC YTSHGHC + +E+G+ E++
Sbjct: 87 KDERGSAADSEESPAIEAIHLLRKTFPNLLVACDVCLCPYTSHGHCGLLSENGAFRAEES 146
Query: 64 LKRLADISKAFSDAGAHIVAPSDMMDNRIHAIKQSLFTSRQSSTTGLLSYSAKFCSAFYG 123
+RLA+++ A++ AG +VAPSDMMD R+ AIK++L + ++SYSAKF S FYG
Sbjct: 147 RQRLAEVALAYAKAGCQVVAPSDMMDGRVEAIKEALMAHGLGNRVSVMSYSAKFASCFYG 206
Query: 124 PFREAAGSAPTFGDRSCYQLPCGSKGLAIRAAVCLCGYTSHGHCAIFNEDGSIHYEKTLK 183
PFR+AA S+P FGDR CYQLP G++GLA+RA
Sbjct: 207 PFRDAAKSSPAFGDRRCYQLPPGARGLALRA----------------------------- 237
Query: 184 RLADISKAFSDAVYVPNHNTDRFQARDVSQGADFLMVKPALPYLDIISEVKSRHPAYPLF 243
DR DV +GAD LMVKP +PYLDI+ EVK +HP PL
Sbjct: 238 -------------------VDR----DVREGADMLMVKPGMPYLDIVREVKDKHPDLPLA 274
Query: 244 VYQVSGEYXXXXXXXXXXXXXXKRALMETLTCLRRGGADVIISYYTPRVLEWLRED 299
VY VSGE+ K A++E +T RR GAD+II+YYTP++L+WL+E+
Sbjct: 275 VYHVSGEFAMLWHGAQAGAFDLKAAVLEAMTAFRRAGADIIITYYTPQLLQWLKEE 330
>pdb|1E51|A Chain A, Crystal Structure Of Native Human Erythrocyte 5-
Aminolaevulinic Acid Dehydratase
pdb|1E51|B Chain B, Crystal Structure Of Native Human Erythrocyte 5-
Aminolaevulinic Acid Dehydratase
Length = 330
Score = 262 bits (670), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 129/296 (43%), Positives = 177/296 (59%), Gaps = 52/296 (17%)
Query: 4 RDETASFADTPDNPLFQVIPMIRKQFPSLTIACDVCLCGYTSHGHCAIFNEDGSIHYEKT 63
+DE S AD+ ++P + I ++RK FP+L +ACDVCLC YTSHGHC + +E+G+ E++
Sbjct: 87 KDERGSAADSEESPAIEAIHLLRKTFPNLLVACDVCLCPYTSHGHCGLLSENGAFRAEES 146
Query: 64 LKRLADISKAFSDAGAHIVAPSDMMDNRIHAIKQSLFTSRQSSTTGLLSYSAKFCSAFYG 123
+RLA+++ A++ AG +VAPSDMMD R+ AIK++L + ++SYSAKF S FYG
Sbjct: 147 RQRLAEVALAYAKAGCQVVAPSDMMDGRVEAIKEALMAHGLGNRVSVMSYSAKFASCFYG 206
Query: 124 PFREAAGSAPTFGDRSCYQLPCGSKGLAIRAAVCLCGYTSHGHCAIFNEDGSIHYEKTLK 183
PFR+AA S+P FGDR CYQLP G++GLA+RA
Sbjct: 207 PFRDAAKSSPAFGDRRCYQLPPGARGLALRA----------------------------- 237
Query: 184 RLADISKAFSDAVYVPNHNTDRFQARDVSQGADFLMVKPALPYLDIISEVKSRHPAYPLF 243
DR DV +GAD LMVKP +PYLDI+ EVK +HP PL
Sbjct: 238 -------------------VDR----DVREGADMLMVKPGMPYLDIVREVKDKHPDLPLA 274
Query: 244 VYQVSGEYXXXXXXXXXXXXXXKRALMETLTCLRRGGADVIISYYTPRVLEWLRED 299
VY VSGE+ K A++E +T RR GAD+II+YYTP++L+WL+E+
Sbjct: 275 VYHVSGEFAMLWHGAQAGAFDLKAAVLEAMTAFRRAGADIIITYYTPQLLQWLKEE 330
>pdb|2Z0I|A Chain A, Crystal Structure Of 5-Aminolevulinic Acid Dehydratase
(Alad) From Mus Musculus
pdb|2Z0I|B Chain B, Crystal Structure Of 5-Aminolevulinic Acid Dehydratase
(Alad) From Mus Musculus
Length = 330
Score = 253 bits (646), Expect = 1e-67, Method: Compositional matrix adjust.
Identities = 126/296 (42%), Positives = 172/296 (58%), Gaps = 52/296 (17%)
Query: 4 RDETASFADTPDNPLFQVIPMIRKQFPSLTIACDVCLCGYTSHGHCAIFNEDGSIHYEKT 63
+DE S AD+ D+P + + ++RK FPSL +ACDVCLC YTSHGHC + +E+G+ E++
Sbjct: 87 KDEQGSAADSEDSPTIEAVRLLRKTFPSLLVACDVCLCPYTSHGHCGLLSENGAFLSEES 146
Query: 64 LKRLADISKAFSDAGAHIVAPSDMMDNRIHAIKQSLFTSRQSSTTGLLSYSAKFCSAFYG 123
+RLA+++ A++ AG +VAPSD D R+ AIK +L + + SYSAKF S FYG
Sbjct: 147 RQRLAEVALAYAKAGCQVVAPSDXXDGRVEAIKAALLKHGLGNRVSVXSYSAKFASCFYG 206
Query: 124 PFREAAGSAPTFGDRSCYQLPCGSKGLAIRAAVCLCGYTSHGHCAIFNEDGSIHYEKTLK 183
PFR+AA S+P FGDR CYQLP G++GLA+RA
Sbjct: 207 PFRDAAQSSPAFGDRRCYQLPPGARGLALRAV---------------------------- 238
Query: 184 RLADISKAFSDAVYVPNHNTDRFQARDVSQGADFLMVKPALPYLDIISEVKSRHPAYPLF 243
ARD+ +GAD L VKP LPYLD + EVK +HP PL
Sbjct: 239 ------------------------ARDIQEGADXLXVKPGLPYLDXVREVKDKHPELPLA 274
Query: 244 VYQVSGEYXXXXXXXXXXXXXXKRALMETLTCLRRGGADVIISYYTPRVLEWLRED 299
VYQVSGE+ + A++ET T RR GAD+II+Y+ P++L+WL+E+
Sbjct: 275 VYQVSGEFAXLWHGAQAGAFDLRTAVLETXTAFRRAGADIIITYFAPQLLKWLKEE 330
>pdb|1YLV|A Chain A, Schiff-Base Complex Of Yeast 5-Aminolaevulinic Acid
Dehydratase With Laevulinic Acid
Length = 342
Score = 202 bits (515), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 114/297 (38%), Positives = 153/297 (51%), Gaps = 52/297 (17%)
Query: 4 RDETASFADTPDNPLFQVIPMIRKQFPSLTIACDVCLCGYTSHGHCAIFNEDGSIHYEKT 63
+D + AD P P+ Q I IR++FP L I CDVCLC YTSHGHC + +DG+I+ E++
Sbjct: 98 KDPVGTAADDPAGPVIQGIKFIREKFPELYIICDVCLCEYTSHGHCGVLYDDGTINRERS 157
Query: 64 LKRLADISKAFSDAGAHIVAPSDMMDNRIHAIKQSLFTSRQSSTTGLLSYSAKFCSAFYG 123
+ RLA ++ ++ AGAH VAPSDM+D RI IK+ L + + T +LSY+AKF YG
Sbjct: 158 VSRLAAVAVNYAKAGAHCVAPSDMIDGRIRDIKRGLINANLAHKTFVLSYAAKFSGNLYG 217
Query: 124 PFREAAGSAPTFGDRSCYQLPCGSKGLAIRAAVCLCGYTSHGHCAIFNEDGSIHYEKTLK 183
PFR+AA SAP+ GDR CYQLP +GLA RA L+
Sbjct: 218 PFRDAACSAPSNGDRKCYQLPPAGRGLARRA---------------------------LE 250
Query: 184 RLADISKAFSDAVYVPNHNTDRFQARDVSQGADFLMVKPALPYLDIISEVKSRHPAYPLF 243
R D+S+GAD ++VKP+ YLDI+ + P+
Sbjct: 251 R-------------------------DMSEGADGIIVKPSTFYLDIMRDASEICKDLPIC 285
Query: 244 VYQVSGEYXXXXXXXXXXXXXXKRALMETLTCLRRGGADVIISYYTPRVLEWLREDK 300
Y VSGEY K E+ T R GA +II+Y P L+WL E+
Sbjct: 286 AYHVSGEYAMLHAAAEKGVVDLKTIAFESHTGFLRAGARLIITYLAPEFLDWLDEEN 342
>pdb|1QNV|A Chain A, Yeast 5-Aminolaevulinic Acid Dehydratase Lead (Pb) Complex
pdb|1QML|A Chain A, Hg Complex Of Yeast 5-Aminolaevulinic Acid Dehydratase
pdb|1H7P|A Chain A, Schiff-Base Complex Of Yeast 5-Aminolaevulinic Acid
Dehydratase With 4-Keto-5-Amino-Hexanoic (Kah) At 1.64 A
Resolution
pdb|1H7R|A Chain A, Schiff-Base Complex Of Yeast 5-Aminolaevulinic Acid
Dehydratase With Succinylacetone At 2.0 A Resolution.
pdb|1H7N|A Chain A, Schiff-Base Complex Of Yeast 5-Aminolaevulinic Acid
Dehydratase With Laevulinic Acid At 1.6 A Resolution
pdb|1OHL|A Chain A, Yeast 5-Aminolaevulinic Acid Dehydratase Putative Cyclic
Reaction Intermediate Complex
pdb|1W31|A Chain A, Yeast 5-Aminolaevulinic Acid Dehydratase
5-Hydroxylaevulinic Acid Complex
Length = 342
Score = 199 bits (506), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 113/297 (38%), Positives = 151/297 (50%), Gaps = 52/297 (17%)
Query: 4 RDETASFADTPDNPLFQVIPMIRKQFPSLTIACDVCLCGYTSHGHCAIFNEDGSIHYEKT 63
+D + AD P P+ Q I IR+ FP L I CDVCLC YTSHGHC + +DG+I+ E++
Sbjct: 98 KDPVGTAADDPAGPVIQGIKFIREYFPELYIICDVCLCEYTSHGHCGVLYDDGTINRERS 157
Query: 64 LKRLADISKAFSDAGAHIVAPSDMMDNRIHAIKQSLFTSRQSSTTGLLSYSAKFCSAFYG 123
+ RLA ++ ++ AGAH VAPSDM+D RI IK+ L + + T +LSY+AKF YG
Sbjct: 158 VSRLAAVAVNYAKAGAHCVAPSDMIDGRIRDIKRGLINANLAHKTFVLSYAAKFSGNLYG 217
Query: 124 PFREAAGSAPTFGDRSCYQLPCGSKGLAIRAAVCLCGYTSHGHCAIFNEDGSIHYEKTLK 183
PFR+AA SAP+ GDR CYQLP +GLA RA L+
Sbjct: 218 PFRDAACSAPSNGDRKCYQLPPAGRGLARRA---------------------------LE 250
Query: 184 RLADISKAFSDAVYVPNHNTDRFQARDVSQGADFLMVKPALPYLDIISEVKSRHPAYPLF 243
R D+S+GAD ++VKP+ YLDI+ + P+
Sbjct: 251 R-------------------------DMSEGADGIIVKPSTFYLDIMRDASEICKDLPIC 285
Query: 244 VYQVSGEYXXXXXXXXXXXXXXKRALMETLTCLRRGGADVIISYYTPRVLEWLREDK 300
Y VSGEY K E+ R GA +II+Y P L+WL E+
Sbjct: 286 AYHVSGEYAMLHAAAEKGVVDLKTIAFESHQGFLRAGARLIITYLAPEFLDWLDEEN 342
>pdb|1H7O|A Chain A, Schiff-Base Complex Of Yeast 5-Aminolaevulinic Acid
Dehydratase With 5-Aminolaevulinic Acid At 1.7 A
Resolution
Length = 341
Score = 199 bits (505), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 113/296 (38%), Positives = 151/296 (51%), Gaps = 52/296 (17%)
Query: 4 RDETASFADTPDNPLFQVIPMIRKQFPSLTIACDVCLCGYTSHGHCAIFNEDGSIHYEKT 63
+D + AD P P+ Q I IR+ FP L I CDVCLC YTSHGHC + +DG+I+ E++
Sbjct: 98 KDPVGTAADDPAGPVIQGIKFIREYFPELYIICDVCLCEYTSHGHCGVLYDDGTINRERS 157
Query: 64 LKRLADISKAFSDAGAHIVAPSDMMDNRIHAIKQSLFTSRQSSTTGLLSYSAKFCSAFYG 123
+ RLA ++ ++ AGAH VAPSDM+D RI IK+ L + + T +LSY+AKF YG
Sbjct: 158 VSRLAAVAVNYAKAGAHCVAPSDMIDGRIRDIKRGLINANLAHKTFVLSYAAKFSGNLYG 217
Query: 124 PFREAAGSAPTFGDRSCYQLPCGSKGLAIRAAVCLCGYTSHGHCAIFNEDGSIHYEKTLK 183
PFR+AA SAP+ GDR CYQLP +GLA RA L+
Sbjct: 218 PFRDAACSAPSNGDRKCYQLPPAGRGLARRA---------------------------LE 250
Query: 184 RLADISKAFSDAVYVPNHNTDRFQARDVSQGADFLMVKPALPYLDIISEVKSRHPAYPLF 243
R D+S+GAD ++VKP+ YLDI+ + P+
Sbjct: 251 R-------------------------DMSEGADGIIVKPSTFYLDIMRDASEICKDLPIC 285
Query: 244 VYQVSGEYXXXXXXXXXXXXXXKRALMETLTCLRRGGADVIISYYTPRVLEWLRED 299
Y VSGEY K E+ R GA +II+Y P L+WL E+
Sbjct: 286 AYHVSGEYAMLHAAAEKGVVDLKTIAFESHQGFLRAGARLIITYLAPEFLDWLDEE 341
>pdb|1EB3|A Chain A, Yeast 5-Aminolaevulinic Acid Dehydratase 4,7-Dioxosebacic
Acid Complex
pdb|1GJP|A Chain A, Schiff-Base Complex Of Yeast 5-Aminolaevulinic Acid
Dehydratase With 4-Oxosebacic Acid
Length = 340
Score = 198 bits (503), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 113/295 (38%), Positives = 150/295 (50%), Gaps = 52/295 (17%)
Query: 4 RDETASFADTPDNPLFQVIPMIRKQFPSLTIACDVCLCGYTSHGHCAIFNEDGSIHYEKT 63
+D + AD P P+ Q I IR+ FP L I CDVCLC YTSHGHC + +DG+I+ E++
Sbjct: 98 KDPVGTAADDPAGPVIQGIKFIREYFPELYIICDVCLCEYTSHGHCGVLYDDGTINRERS 157
Query: 64 LKRLADISKAFSDAGAHIVAPSDMMDNRIHAIKQSLFTSRQSSTTGLLSYSAKFCSAFYG 123
+ RLA ++ ++ AGAH VAPSDM+D RI IK+ L + + T +LSY+AKF YG
Sbjct: 158 VSRLAAVAVNYAKAGAHCVAPSDMIDGRIRDIKRGLINANLAHKTFVLSYAAKFSGNLYG 217
Query: 124 PFREAAGSAPTFGDRSCYQLPCGSKGLAIRAAVCLCGYTSHGHCAIFNEDGSIHYEKTLK 183
PFR+AA SAP+ GDR CYQLP +GLA RA L+
Sbjct: 218 PFRDAACSAPSNGDRKCYQLPPAGRGLARRA---------------------------LE 250
Query: 184 RLADISKAFSDAVYVPNHNTDRFQARDVSQGADFLMVKPALPYLDIISEVKSRHPAYPLF 243
R D+S+GAD ++VKP+ YLDI+ + P+
Sbjct: 251 R-------------------------DMSEGADGIIVKPSTFYLDIMRDASEICKDLPIC 285
Query: 244 VYQVSGEYXXXXXXXXXXXXXXKRALMETLTCLRRGGADVIISYYTPRVLEWLRE 298
Y VSGEY K E+ R GA +II+Y P L+WL E
Sbjct: 286 AYHVSGEYAMLHAAAEKGVVDLKTIAFESHQGFLRAGARLIITYLAPEFLDWLDE 340
>pdb|1AW5|A Chain A, 5-Aminolevulinate Dehydratase From Saccharomyces
Cerevisiae
Length = 340
Score = 193 bits (490), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 112/295 (37%), Positives = 149/295 (50%), Gaps = 52/295 (17%)
Query: 4 RDETASFADTPDNPLFQVIPMIRKQFPSLTIACDVCLCGYTSHGHCAIFNEDGSIHYEKT 63
+D + AD P P+ Q I IR++FP L I CDVCLC YTSHGHC + +DG+I+ E++
Sbjct: 98 KDPVGTAADDPAGPVIQGIRFIREKFPELYIICDVCLCEYTSHGHCGVLYDDGTINRERS 157
Query: 64 LKRLADISKAFSDAGAHIVAPSDMMDNRIHAIKQSLFTSRQSSTTGLLSYSAKFCSAFYG 123
+ RLA ++ ++ AGAH VAPSD +D RI IK+ L + + T +LSY+AKF YG
Sbjct: 158 VSRLAAVAVNYAKAGAHCVAPSDXIDGRIRDIKRGLINANLAHKTFVLSYAAKFSGNLYG 217
Query: 124 PFREAAGSAPTFGDRSCYQLPCGSKGLAIRAAVCLCGYTSHGHCAIFNEDGSIHYEKTLK 183
P R+AA SAP+ GDR CYQLP +GLA RA L+
Sbjct: 218 PARDAACSAPSNGDRKCYQLPPAGRGLARRA---------------------------LE 250
Query: 184 RLADISKAFSDAVYVPNHNTDRFQARDVSQGADFLMVKPALPYLDIISEVKSRHPAYPLF 243
R D S+GAD ++VKP+ YLDI+ + P+
Sbjct: 251 R-------------------------DXSEGADGIIVKPSTFYLDIVRDASEICKDLPIC 285
Query: 244 VYQVSGEYXXXXXXXXXXXXXXKRALMETLTCLRRGGADVIISYYTPRVLEWLRE 298
Y VSGEY K E+ R GA +II+Y P L+WL E
Sbjct: 286 AYHVSGEYAXLHAAAEKGVVDLKTIAFESHQGFLRAGARLIITYLAPEFLDWLDE 340
>pdb|1W5Q|A Chain A, Stepwise Introduction Of Zinc Binding Site Into
Porphobilinogen Synthase Of Pseudomonas Aeruginosa
(Mutations A129c, D131c, D139c, P132e, K229r)
pdb|1W5Q|B Chain B, Stepwise Introduction Of Zinc Binding Site Into
Porphobilinogen Synthase Of Pseudomonas Aeruginosa
(Mutations A129c, D131c, D139c, P132e, K229r)
Length = 337
Score = 164 bits (415), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 95/278 (34%), Positives = 145/278 (52%), Gaps = 57/278 (20%)
Query: 25 IRKQFPSLTIACDVCLCGYTSHGHCAIFNEDGSIHYEKTLKRLADISKAFSDAGAHIVAP 84
+R++FP L I DVCLC +T+HG C I ++DG + + ++ L + + ++AGA +VAP
Sbjct: 115 LRERFPELGIITDVCLCEFTTHGQCGILDDDGYVLNDVSIDVLVRQALSHAEAGAQVVAP 174
Query: 85 SDMMDNRIHAIKQSLFTSRQSSTTGLLSYSAKFCSAFYGPFREAAGSAPTF--GDRSCYQ 142
SDMMD RI AI+++L ++ ++ +++YSAK+ SA+YGPFR+A GSA G+R+ YQ
Sbjct: 175 SDMMDGRIGAIREALESAGHTNVR-VMAYSAKYASAYYGPFRDAVGSASNLGKGNRATYQ 233
Query: 143 LPCGSKGLAIRAAVCLCGYTSHGHCAIFNEDGSIHYEKTLKRLADISKAFSDAVYVPNHN 202
+ N D ++H
Sbjct: 234 MDPA------------------------NSDEALHE------------------------ 245
Query: 203 TDRFQARDVSQGADFLMVKPALPYLDIISEVKSRHPAYPLFVYQVSGEYXXXXXXXXXXX 262
A D+++GAD +MVKP +PYLDI+ VK A P FVYQVSGEY
Sbjct: 246 ----VAADLAEGADMVMVKPGMPYLDIVRRVKDEFRA-PTFVYQVSGEY-AMHMGAIQNG 299
Query: 263 XXXKRALMETLTCLRRGGADVIISYYTPRVLEWLREDK 300
+ ++E+LT +R GAD I++Y+ + E LR +
Sbjct: 300 WLAESVILESLTAFKRAGADGILTYFAKQAAEQLRRGR 337
>pdb|1W5P|A Chain A, Stepwise Introduction Of Zinc Binding Site Into
Porphobilinogen Synthase Of Pseudomonas Aeruginosa
(Mutations A129c, D131c, D139c, P132e)
pdb|1W5P|B Chain B, Stepwise Introduction Of Zinc Binding Site Into
Porphobilinogen Synthase Of Pseudomonas Aeruginosa
(Mutations A129c, D131c, D139c, P132e)
Length = 337
Score = 162 bits (411), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 94/278 (33%), Positives = 145/278 (52%), Gaps = 57/278 (20%)
Query: 25 IRKQFPSLTIACDVCLCGYTSHGHCAIFNEDGSIHYEKTLKRLADISKAFSDAGAHIVAP 84
+R++FP L I DVCLC +T+HG C I ++DG + + ++ L + + ++AGA +VAP
Sbjct: 115 LRERFPELGIITDVCLCEFTTHGQCGILDDDGYVLNDVSIDVLVRQALSHAEAGAQVVAP 174
Query: 85 SDMMDNRIHAIKQSLFTSRQSSTTGLLSYSAKFCSAFYGPFREAAGSAPTF--GDRSCYQ 142
SDMMD RI AI+++L ++ ++ +++YSAK+ SA+YGPFR+A GSA G+++ YQ
Sbjct: 175 SDMMDGRIGAIREALESAGHTNVR-VMAYSAKYASAYYGPFRDAVGSASNLGKGNKATYQ 233
Query: 143 LPCGSKGLAIRAAVCLCGYTSHGHCAIFNEDGSIHYEKTLKRLADISKAFSDAVYVPNHN 202
+ N D ++H
Sbjct: 234 MDPA------------------------NSDEALHE------------------------ 245
Query: 203 TDRFQARDVSQGADFLMVKPALPYLDIISEVKSRHPAYPLFVYQVSGEYXXXXXXXXXXX 262
A D+++GAD +MVKP +PYLDI+ VK A P FVYQVSGEY
Sbjct: 246 ----VAADLAEGADMVMVKPGMPYLDIVRRVKDEFRA-PTFVYQVSGEY-AMHMGAIQNG 299
Query: 263 XXXKRALMETLTCLRRGGADVIISYYTPRVLEWLREDK 300
+ ++E+LT +R GAD I++Y+ + E LR +
Sbjct: 300 WLAESVILESLTAFKRAGADGILTYFAKQAAEQLRRGR 337
>pdb|1W5O|A Chain A, Stepwise Introduction Of Zinc Binding Site Into
Porphobilinogen Synthase Of Pseudomonas Aeruginosa
(Mutations A129c, D131c And D139c)
pdb|1W5O|B Chain B, Stepwise Introduction Of Zinc Binding Site Into
Porphobilinogen Synthase Of Pseudomonas Aeruginosa
(Mutations A129c, D131c And D139c)
Length = 337
Score = 162 bits (410), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 94/278 (33%), Positives = 145/278 (52%), Gaps = 57/278 (20%)
Query: 25 IRKQFPSLTIACDVCLCGYTSHGHCAIFNEDGSIHYEKTLKRLADISKAFSDAGAHIVAP 84
+R++FP L I DVCLC +T+HG C I ++DG + + ++ L + + ++AGA +VAP
Sbjct: 115 LRERFPELGIITDVCLCPFTTHGQCGILDDDGYVLNDVSIDVLVRQALSHAEAGAQVVAP 174
Query: 85 SDMMDNRIHAIKQSLFTSRQSSTTGLLSYSAKFCSAFYGPFREAAGSAPTF--GDRSCYQ 142
SDMMD RI AI+++L ++ ++ +++YSAK+ SA+YGPFR+A GSA G+++ YQ
Sbjct: 175 SDMMDGRIGAIREALESAGHTNVR-VMAYSAKYASAYYGPFRDAVGSASNLGKGNKATYQ 233
Query: 143 LPCGSKGLAIRAAVCLCGYTSHGHCAIFNEDGSIHYEKTLKRLADISKAFSDAVYVPNHN 202
+ N D ++H
Sbjct: 234 MDPA------------------------NSDEALHE------------------------ 245
Query: 203 TDRFQARDVSQGADFLMVKPALPYLDIISEVKSRHPAYPLFVYQVSGEYXXXXXXXXXXX 262
A D+++GAD +MVKP +PYLDI+ VK A P FVYQVSGEY
Sbjct: 246 ----VAADLAEGADMVMVKPGMPYLDIVRRVKDEFRA-PTFVYQVSGEY-AMHMGAIQNG 299
Query: 263 XXXKRALMETLTCLRRGGADVIISYYTPRVLEWLREDK 300
+ ++E+LT +R GAD I++Y+ + E LR +
Sbjct: 300 WLAESVILESLTAFKRAGADGILTYFAKQAAEQLRRGR 337
>pdb|1W5N|A Chain A, Stepwise Introduction Of Zinc Binding Site Into
Porphobilinogen Synthase Of Pseudomonas Aeruginosa
(Mutations D131c And D139c)
pdb|1W5N|B Chain B, Stepwise Introduction Of Zinc Binding Site Into
Porphobilinogen Synthase Of Pseudomonas Aeruginosa
(Mutations D131c And D139c)
Length = 337
Score = 159 bits (403), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 93/278 (33%), Positives = 144/278 (51%), Gaps = 57/278 (20%)
Query: 25 IRKQFPSLTIACDVCLCGYTSHGHCAIFNEDGSIHYEKTLKRLADISKAFSDAGAHIVAP 84
+R++FP L I DV LC +T+HG C I ++DG + + ++ L + + ++AGA +VAP
Sbjct: 115 LRERFPELGIITDVALCPFTTHGQCGILDDDGYVLNDVSIDVLVRQALSHAEAGAQVVAP 174
Query: 85 SDMMDNRIHAIKQSLFTSRQSSTTGLLSYSAKFCSAFYGPFREAAGSAPTF--GDRSCYQ 142
SDMMD RI AI+++L ++ ++ +++YSAK+ SA+YGPFR+A GSA G+++ YQ
Sbjct: 175 SDMMDGRIGAIREALESAGHTNVR-VMAYSAKYASAYYGPFRDAVGSASNLGKGNKATYQ 233
Query: 143 LPCGSKGLAIRAAVCLCGYTSHGHCAIFNEDGSIHYEKTLKRLADISKAFSDAVYVPNHN 202
+ N D ++H
Sbjct: 234 MDPA------------------------NSDEALHE------------------------ 245
Query: 203 TDRFQARDVSQGADFLMVKPALPYLDIISEVKSRHPAYPLFVYQVSGEYXXXXXXXXXXX 262
A D+++GAD +MVKP +PYLDI+ VK A P FVYQVSGEY
Sbjct: 246 ----VAADLAEGADMVMVKPGMPYLDIVRRVKDEFRA-PTFVYQVSGEY-AMHMGAIQNG 299
Query: 263 XXXKRALMETLTCLRRGGADVIISYYTPRVLEWLREDK 300
+ ++E+LT +R GAD I++Y+ + E LR +
Sbjct: 300 WLAESVILESLTAFKRAGADGILTYFAKQAAEQLRRGR 337
>pdb|1W56|A Chain A, Stepwise Introduction Of Zinc Binding Site Into
Porphobilinogen Synthase Of Pseudomonas Aeruginosa
(Mutations A129c And D131c)
pdb|1W56|B Chain B, Stepwise Introduction Of Zinc Binding Site Into
Porphobilinogen Synthase Of Pseudomonas Aeruginosa
(Mutations A129c And D131c)
Length = 337
Score = 158 bits (399), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 93/278 (33%), Positives = 144/278 (51%), Gaps = 57/278 (20%)
Query: 25 IRKQFPSLTIACDVCLCGYTSHGHCAIFNEDGSIHYEKTLKRLADISKAFSDAGAHIVAP 84
+R++FP L I DVCLC +T+HG I ++DG + + ++ L + + ++AGA +VAP
Sbjct: 115 LRERFPELGIITDVCLCPFTTHGQDGILDDDGYVLNDVSIDVLVRQALSHAEAGAQVVAP 174
Query: 85 SDMMDNRIHAIKQSLFTSRQSSTTGLLSYSAKFCSAFYGPFREAAGSAPTF--GDRSCYQ 142
SDMMD RI AI+++L ++ ++ +++YSAK+ SA+YGPFR+A GSA G+++ YQ
Sbjct: 175 SDMMDGRIGAIREALESAGHTNVR-VMAYSAKYASAYYGPFRDAVGSASNLGKGNKATYQ 233
Query: 143 LPCGSKGLAIRAAVCLCGYTSHGHCAIFNEDGSIHYEKTLKRLADISKAFSDAVYVPNHN 202
+ N D ++H
Sbjct: 234 MDPA------------------------NSDEALHE------------------------ 245
Query: 203 TDRFQARDVSQGADFLMVKPALPYLDIISEVKSRHPAYPLFVYQVSGEYXXXXXXXXXXX 262
A D+++GAD +MVKP +PYLDI+ VK A P FVYQVSGEY
Sbjct: 246 ----VAADLAEGADMVMVKPGMPYLDIVRRVKDEFRA-PTFVYQVSGEY-AMHMGAIQNG 299
Query: 263 XXXKRALMETLTCLRRGGADVIISYYTPRVLEWLREDK 300
+ ++E+LT +R GAD I++Y+ + E LR +
Sbjct: 300 WLAESVILESLTAFKRAGADGILTYFAKQAAEQLRRGR 337
>pdb|1W5M|A Chain A, Stepwise Introduction Of Zinc Binding Site Into
Porphobilinogen Synthase Of Pseudomonas Aeruginosa
(Mutations A129c And D139c)
pdb|1W5M|B Chain B, Stepwise Introduction Of Zinc Binding Site Into
Porphobilinogen Synthase Of Pseudomonas Aeruginosa
(Mutations A129c And D139c)
Length = 337
Score = 158 bits (399), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 93/278 (33%), Positives = 144/278 (51%), Gaps = 57/278 (20%)
Query: 25 IRKQFPSLTIACDVCLCGYTSHGHCAIFNEDGSIHYEKTLKRLADISKAFSDAGAHIVAP 84
+R++FP L I DVCL +T+HG C I ++DG + + ++ L + + ++AGA +VAP
Sbjct: 115 LRERFPELGIITDVCLDPFTTHGQCGILDDDGYVLNDVSIDVLVRQALSHAEAGAQVVAP 174
Query: 85 SDMMDNRIHAIKQSLFTSRQSSTTGLLSYSAKFCSAFYGPFREAAGSAPTF--GDRSCYQ 142
SDMMD RI AI+++L ++ ++ +++YSAK+ SA+YGPFR+A GSA G+++ YQ
Sbjct: 175 SDMMDGRIGAIREALESAGHTNVR-VMAYSAKYASAYYGPFRDAVGSASNLGKGNKATYQ 233
Query: 143 LPCGSKGLAIRAAVCLCGYTSHGHCAIFNEDGSIHYEKTLKRLADISKAFSDAVYVPNHN 202
+ N D ++H
Sbjct: 234 MDPA------------------------NSDEALHE------------------------ 245
Query: 203 TDRFQARDVSQGADFLMVKPALPYLDIISEVKSRHPAYPLFVYQVSGEYXXXXXXXXXXX 262
A D+++GAD +MVKP +PYLDI+ VK A P FVYQVSGEY
Sbjct: 246 ----VAADLAEGADMVMVKPGMPYLDIVRRVKDEFRA-PTFVYQVSGEY-AMHMGAIQNG 299
Query: 263 XXXKRALMETLTCLRRGGADVIISYYTPRVLEWLREDK 300
+ ++E+LT +R GAD I++Y+ + E LR +
Sbjct: 300 WLAESVILESLTAFKRAGADGILTYFAKQAAEQLRRGR 337
>pdb|1W1Z|A Chain A, Structure Of The Plant Like 5-Amino Laevulinic Acid
Dehydratase From Chlorobium Vibrioforme
pdb|1W1Z|B Chain B, Structure Of The Plant Like 5-Amino Laevulinic Acid
Dehydratase From Chlorobium Vibrioforme
pdb|2C1H|A Chain A, The X-Ray Structure Of Chlorobium Vibrioforme 5-
Aminolaevulinic Acid Dehydratase Complexed With A Diacid
Inhibitor
pdb|2C1H|B Chain B, The X-Ray Structure Of Chlorobium Vibrioforme 5-
Aminolaevulinic Acid Dehydratase Complexed With A Diacid
Inhibitor
Length = 328
Score = 157 bits (398), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 99/294 (33%), Positives = 143/294 (48%), Gaps = 55/294 (18%)
Query: 4 RDETASFADTPDNPLFQVIPMIRKQFPSLTIACDVCLCGYTSHGHCAIFNEDGSIHYEKT 63
+ E S A + L Q I I+K P L I DV L +T GH + +DG I ++T
Sbjct: 90 KTEDGSEAYNDNGILQQAIRAIKKAVPELCIMTDVALDPFTPFGHDGLV-KDGIILNDET 148
Query: 64 LKRLADISKAFSDAGAHIVAPSDMMDNRIHAIKQSLFTSRQSSTTGLLSYSAKFCSAFYG 123
++ L ++ + ++AGA V+PSDMMD RI AI+++L + S G+LSY+AK+ S+FYG
Sbjct: 149 VEVLQKMAVSHAEAGADFVSPSDMMDGRIGAIREALDETDHSDV-GILSYAAKYASSFYG 207
Query: 124 PFREAAGSAPTFGDRSCYQLPCGSKGLAIRAAVCLCGYTSHGHCAIFNEDGSIHYEKTLK 183
PFR+A SAP FGD+S YQ+ + E+ +K
Sbjct: 208 PFRDALHSAPQFGDKSTYQM------------------------------NPANTEEAMK 237
Query: 184 RLADISKAFSDAVYVPNHNTDRFQARDVSQGADFLMVKPALPYLDIISEVKSRHPAYPLF 243
+ D+ +GAD +MVKP L YLDI+ K R P+
Sbjct: 238 EV----------------------ELDIVEGADIVMVKPGLAYLDIVWRTKERFDV-PVA 274
Query: 244 VYQVSGEYXXXXXXXXXXXXXXKRALMETLTCLRRGGADVIISYYTPRVLEWLR 297
+Y VSGEY R +ME+L C++R GAD+I +YY + LR
Sbjct: 275 IYHVSGEYAMVKAAAAKGWIDEDRVMMESLLCMKRAGADIIFTYYAKEAAKKLR 328
>pdb|1W54|A Chain A, Stepwise Introduction Of A Zinc Binding Site Into
Porphobilinogen Synthase From Pseudomonas Aeruginosa
(mutation D139c)
pdb|1W54|B Chain B, Stepwise Introduction Of A Zinc Binding Site Into
Porphobilinogen Synthase From Pseudomonas Aeruginosa
(mutation D139c)
Length = 337
Score = 155 bits (393), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 92/278 (33%), Positives = 143/278 (51%), Gaps = 57/278 (20%)
Query: 25 IRKQFPSLTIACDVCLCGYTSHGHCAIFNEDGSIHYEKTLKRLADISKAFSDAGAHIVAP 84
+R++FP L I DV L +T+HG C I ++DG + + ++ L + + ++AGA +VAP
Sbjct: 115 LRERFPELGIITDVALDPFTTHGQCGILDDDGYVLNDVSIDVLVRQALSHAEAGAQVVAP 174
Query: 85 SDMMDNRIHAIKQSLFTSRQSSTTGLLSYSAKFCSAFYGPFREAAGSAPTF--GDRSCYQ 142
SDMMD RI AI+++L ++ ++ +++YSAK+ SA+YGPFR+A GSA G+++ YQ
Sbjct: 175 SDMMDGRIGAIREALESAGHTNVR-VMAYSAKYASAYYGPFRDAVGSASNLGKGNKATYQ 233
Query: 143 LPCGSKGLAIRAAVCLCGYTSHGHCAIFNEDGSIHYEKTLKRLADISKAFSDAVYVPNHN 202
+ N D ++H
Sbjct: 234 MDPA------------------------NSDEALHE------------------------ 245
Query: 203 TDRFQARDVSQGADFLMVKPALPYLDIISEVKSRHPAYPLFVYQVSGEYXXXXXXXXXXX 262
A D+++GAD +MVKP +PYLDI+ VK A P FVYQVSGEY
Sbjct: 246 ----VAADLAEGADMVMVKPGMPYLDIVRRVKDEFRA-PTFVYQVSGEY-AMHMGAIQNG 299
Query: 263 XXXKRALMETLTCLRRGGADVIISYYTPRVLEWLREDK 300
+ ++E+LT +R GAD I++Y+ + E LR +
Sbjct: 300 WLAESVILESLTAFKRAGADGILTYFAKQAAEQLRRGR 337
>pdb|1GZG|A Chain A, Complex Of A Mg2-Dependent Porphobilinogen Synthase From
Pseudomonas Aeruginosa (Mutant D139n) With
5-Fluorolevulinic Acid
pdb|1GZG|B Chain B, Complex Of A Mg2-Dependent Porphobilinogen Synthase From
Pseudomonas Aeruginosa (Mutant D139n) With
5-Fluorolevulinic Acid
Length = 337
Score = 152 bits (383), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 91/278 (32%), Positives = 142/278 (51%), Gaps = 57/278 (20%)
Query: 25 IRKQFPSLTIACDVCLCGYTSHGHCAIFNEDGSIHYEKTLKRLADISKAFSDAGAHIVAP 84
+R++FP L I DV L +T+HG I ++DG + + ++ L + + ++AGA +VAP
Sbjct: 115 LRERFPELGIITDVALDPFTTHGQNGILDDDGYVLNDVSIDVLVRQALSHAEAGAQVVAP 174
Query: 85 SDMMDNRIHAIKQSLFTSRQSSTTGLLSYSAKFCSAFYGPFREAAGSAPTF--GDRSCYQ 142
SDMMD RI AI+++L ++ ++ +++YSAK+ SA+YGPFR+A GSA G+++ YQ
Sbjct: 175 SDMMDGRIGAIREALESAGHTNVR-VMAYSAKYASAYYGPFRDAVGSASNLGKGNKATYQ 233
Query: 143 LPCGSKGLAIRAAVCLCGYTSHGHCAIFNEDGSIHYEKTLKRLADISKAFSDAVYVPNHN 202
+ N D ++H
Sbjct: 234 MDPA------------------------NSDEALHE------------------------ 245
Query: 203 TDRFQARDVSQGADFLMVKPALPYLDIISEVKSRHPAYPLFVYQVSGEYXXXXXXXXXXX 262
A D+++GAD +MVKP +PYLDI+ VK A P FVYQVSGEY
Sbjct: 246 ----VAADLAEGADMVMVKPGMPYLDIVRRVKDEFRA-PTFVYQVSGEY-AMHMGAIQNG 299
Query: 263 XXXKRALMETLTCLRRGGADVIISYYTPRVLEWLREDK 300
+ ++E+LT +R GAD I++Y+ + E LR +
Sbjct: 300 WLAESVILESLTAFKRAGADGILTYFAKQAAEQLRRGR 337
>pdb|1B4K|A Chain A, High Resolution Crystal Structure Of A Mg2-Dependent
5-Aminolevulinic Acid Dehydratase
pdb|1B4K|B Chain B, High Resolution Crystal Structure Of A Mg2-Dependent
5-Aminolevulinic Acid Dehydratase
pdb|2WOQ|A Chain A, Porphobilinogen Synthase (Hemb) In Complex With
5-Acetamido- 4-Oxohexanoic Acid (Alaremycin 2)
Length = 337
Score = 152 bits (383), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 91/278 (32%), Positives = 142/278 (51%), Gaps = 57/278 (20%)
Query: 25 IRKQFPSLTIACDVCLCGYTSHGHCAIFNEDGSIHYEKTLKRLADISKAFSDAGAHIVAP 84
+R++FP L I DV L +T+HG I ++DG + + ++ L + + ++AGA +VAP
Sbjct: 115 LRERFPELGIITDVALDPFTTHGQDGILDDDGYVLNDVSIDVLVRQALSHAEAGAQVVAP 174
Query: 85 SDMMDNRIHAIKQSLFTSRQSSTTGLLSYSAKFCSAFYGPFREAAGSAPTF--GDRSCYQ 142
SDMMD RI AI+++L ++ ++ +++YSAK+ SA+YGPFR+A GSA G+++ YQ
Sbjct: 175 SDMMDGRIGAIREALESAGHTNVR-IMAYSAKYASAYYGPFRDAVGSASNLGKGNKATYQ 233
Query: 143 LPCGSKGLAIRAAVCLCGYTSHGHCAIFNEDGSIHYEKTLKRLADISKAFSDAVYVPNHN 202
+ N D ++H
Sbjct: 234 MDPA------------------------NSDEALHE------------------------ 245
Query: 203 TDRFQARDVSQGADFLMVKPALPYLDIISEVKSRHPAYPLFVYQVSGEYXXXXXXXXXXX 262
A D+++GAD +MVKP +PYLDI+ VK A P FVYQVSGEY
Sbjct: 246 ----VAADLAEGADMVMVKPGMPYLDIVRRVKDEFRA-PTFVYQVSGEY-AMHMGAIQNG 299
Query: 263 XXXKRALMETLTCLRRGGADVIISYYTPRVLEWLREDK 300
+ ++E+LT +R GAD I++Y+ + E LR +
Sbjct: 300 WLAESVILESLTAFKRAGADGILTYFAKQAAEQLRRGR 337
>pdb|2C15|A Chain A, 5-(4-Carboxy-2-Oxo-Butoxy)-4-Oxo-Pentanoic Acid Acid Bound
To Porphobilinogen Synthase From Pseudomonas Aeruginosa
pdb|2C15|B Chain B, 5-(4-Carboxy-2-Oxo-Butoxy)-4-Oxo-Pentanoic Acid Acid Bound
To Porphobilinogen Synthase From Pseudomonas Aeruginosa
pdb|2C18|A Chain A, 5-(4-Carboxy-2-Oxo-Butane-1-Sulfonyl)-4-Oxo-Pentanoic Acid
Bound To Porphobilinogen Synthase From Pseudomonas
Aeruginosa
pdb|2C18|B Chain B, 5-(4-Carboxy-2-Oxo-Butane-1-Sulfonyl)-4-Oxo-Pentanoic Acid
Bound To Porphobilinogen Synthase From Pseudomonas
Aeruginosa
Length = 337
Score = 149 bits (376), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 90/278 (32%), Positives = 141/278 (50%), Gaps = 57/278 (20%)
Query: 25 IRKQFPSLTIACDVCLCGYTSHGHCAIFNEDGSIHYEKTLKRLADISKAFSDAGAHIVAP 84
+R++FP L I DV L +T+HG I ++DG + + ++ L + + ++AGA +VAP
Sbjct: 115 LRERFPELGIITDVALDPFTTHGQDGILDDDGYVLNDVSIDVLVRQALSHAEAGAQVVAP 174
Query: 85 SDMMDNRIHAIKQSLFTSRQSSTTGLLSYSAKFCSAFYGPFREAAGSAPTF--GDRSCYQ 142
SDMMD RI AI+++L ++ ++ +++YSAK+ SA+YGPFR+A GSA G+++ YQ
Sbjct: 175 SDMMDGRIGAIREALESAGHTNVR-VMAYSAKYASAYYGPFRDAVGSASNLGKGNKATYQ 233
Query: 143 LPCGSKGLAIRAAVCLCGYTSHGHCAIFNEDGSIHYEKTLKRLADISKAFSDAVYVPNHN 202
+ N D ++H
Sbjct: 234 MDPA------------------------NSDEALHE------------------------ 245
Query: 203 TDRFQARDVSQGADFLMVKPALPYLDIISEVKSRHPAYPLFVYQVSGEYXXXXXXXXXXX 262
A D+++GAD +MV P +PYLDI+ VK A P FVYQVSGEY
Sbjct: 246 ----VAADLAEGADMVMVXPGMPYLDIVRRVKDEFRA-PTFVYQVSGEY-AMHMGAIQNG 299
Query: 263 XXXKRALMETLTCLRRGGADVIISYYTPRVLEWLREDK 300
+ ++E+LT +R GAD I++Y+ + E LR +
Sbjct: 300 WLAESVILESLTAFKRAGADGILTYFAKQAAEQLRRGR 337
>pdb|1B4E|A Chain A, X-Ray Structure Of 5-Aminolevulinic Acid Dehydratase
Complexed With The Inhibitor Levulinic Acid
Length = 323
Score = 144 bits (364), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 95/284 (33%), Positives = 137/284 (48%), Gaps = 56/284 (19%)
Query: 5 DETASFADTPDNPLFQVIPMIRKQFPSLTIACDVCLCGYTSHGHCAIFNEDGSIHYEKTL 64
DET S A D + ++ + ++ P + + D C C YTSHGHC + E G + + TL
Sbjct: 85 DETGSDAWREDGLVARMSRICKQTVPEMIVMSDTCFCEYTSHGHCGVLKEHG-VDNDATL 143
Query: 65 KRLADISKAFSDAGAHIVAPSDMMDNRIHAIKQSLFTSRQSSTTGLLSYSAKFCSAFYGP 124
+ L + + AGA +APS MD ++ AI+Q+L + T ++SYS KF S+FYGP
Sbjct: 144 ENLGKQAVVAAAAGADFIAPSAAMDGQVQAIRQAL-DAAGFKDTAIMSYSTKFASSFYGP 202
Query: 125 FREAAGSAPTFGDRSCYQLPCGSKGLAIRAAVCLCGYTSHGHCAIFNEDGSIHYEKTLKR 184
FREAAGSA GDR YQ+ ++ AIR ++
Sbjct: 203 FREAAGSALK-GDRKSYQMNPMNRREAIRESLL--------------------------- 234
Query: 185 LADISKAFSDAVYVPNHNTDRFQARDVSQGADFLMVKPALPYLDIISEVKSRHPAYPLFV 244
D +QGAD LMVKPA YLDI+ E++ R P+
Sbjct: 235 -------------------------DEAQGADCLMVKPAGAYLDIVRELRER-TELPIGA 268
Query: 245 YQVSGEYXXXXXXXXXXXXXXKRALMETLTCLRRGGADVIISYY 288
YQVSGEY ++ ++E+L ++R GAD+I SY+
Sbjct: 269 YQVSGEYAMIKFAALAGAIDEEKVVLESLGSIKRAGADLIFSYF 312
>pdb|1L6S|A Chain A, Crystal Structure Of Porphobilinogen Synthase Complexed
With The Inhibitor 4,7-Dioxosebacic Acid
pdb|1L6S|B Chain B, Crystal Structure Of Porphobilinogen Synthase Complexed
With The Inhibitor 4,7-Dioxosebacic Acid
pdb|1L6Y|A Chain A, Crystal Structure Of Porphobilinogen Synthase Complexed
With The Inhibitor 4-Oxosebacic Acid
pdb|1L6Y|B Chain B, Crystal Structure Of Porphobilinogen Synthase Complexed
With The Inhibitor 4-Oxosebacic Acid
Length = 323
Score = 144 bits (362), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 95/284 (33%), Positives = 137/284 (48%), Gaps = 56/284 (19%)
Query: 5 DETASFADTPDNPLFQVIPMIRKQFPSLTIACDVCLCGYTSHGHCAIFNEDGSIHYEKTL 64
DET S A D + ++ + ++ P + + D C C YTSHGHC + E G + + TL
Sbjct: 85 DETGSDAWREDGLVARMSRICKQTVPEMIVMSDTCFCEYTSHGHCGVLXEHG-VDNDATL 143
Query: 65 KRLADISKAFSDAGAHIVAPSDMMDNRIHAIKQSLFTSRQSSTTGLLSYSAKFCSAFYGP 124
+ L + + AGA +APS MD ++ AI+Q+L + T ++SYS KF S+FYGP
Sbjct: 144 ENLGKQAVVAAAAGADFIAPSAAMDGQVQAIRQAL-DAAGFKDTAIMSYSTKFASSFYGP 202
Query: 125 FREAAGSAPTFGDRSCYQLPCGSKGLAIRAAVCLCGYTSHGHCAIFNEDGSIHYEKTLKR 184
FREAAGSA GDR YQ+ ++ AIR ++
Sbjct: 203 FREAAGSALK-GDRKSYQMNPMNRREAIRESLL--------------------------- 234
Query: 185 LADISKAFSDAVYVPNHNTDRFQARDVSQGADFLMVKPALPYLDIISEVKSRHPAYPLFV 244
D +QGAD LMVKPA YLDI+ E++ R P+
Sbjct: 235 -------------------------DEAQGADCLMVKPAGAYLDIVRELRER-TELPIGA 268
Query: 245 YQVSGEYXXXXXXXXXXXXXXKRALMETLTCLRRGGADVIISYY 288
YQVSGEY ++ ++E+L ++R GAD+I SY+
Sbjct: 269 YQVSGEYAMIKFAALAGAIDEEKVVLESLGSIKRAGADLIFSYF 312
>pdb|1I8J|A Chain A, Crystal Structure Of Porphobilinogen Synthase Complexed
With The Inhibitor 4,7-Dioxosebacic Acid
pdb|1I8J|B Chain B, Crystal Structure Of Porphobilinogen Synthase Complexed
With The Inhibitor 4,7-Dioxosebacic Acid
Length = 323
Score = 142 bits (359), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 95/284 (33%), Positives = 137/284 (48%), Gaps = 56/284 (19%)
Query: 5 DETASFADTPDNPLFQVIPMIRKQFPSLTIACDVCLCGYTSHGHCAIFNEDGSIHYEKTL 64
DET S A D + ++ + ++ P + + D C C YTSHGHC + E G + + TL
Sbjct: 85 DETGSDAWREDGLVARMSRICKQTVPEMIVMSDTCFCEYTSHGHCGVLCEHG-VDNDATL 143
Query: 65 KRLADISKAFSDAGAHIVAPSDMMDNRIHAIKQSLFTSRQSSTTGLLSYSAKFCSAFYGP 124
+ L + + AGA +APS MD ++ AI+Q+L + T ++SYS KF S+FYGP
Sbjct: 144 ENLGKQAVVAAAAGADFIAPSAAMDGQVQAIRQAL-DAAGFKDTAIMSYSTKFASSFYGP 202
Query: 125 FREAAGSAPTFGDRSCYQLPCGSKGLAIRAAVCLCGYTSHGHCAIFNEDGSIHYEKTLKR 184
FREAAGSA GDR YQ+ ++ AIR ++
Sbjct: 203 FREAAGSALK-GDRKSYQMNPMNRREAIRESLL--------------------------- 234
Query: 185 LADISKAFSDAVYVPNHNTDRFQARDVSQGADFLMVKPALPYLDIISEVKSRHPAYPLFV 244
D +QGAD LMVKPA YLDI+ E++ R P+
Sbjct: 235 -------------------------DEAQGADCLMVKPAGAYLDIVRELRER-TELPIGA 268
Query: 245 YQVSGEYXXXXXXXXXXXXXXKRALMETLTCLRRGGADVIISYY 288
YQVSGEY ++ ++E+L ++R GAD+I SY+
Sbjct: 269 YQVSGEYAMIKFAALAGAIDEEKVVLESLGSIKRAGADLIFSYF 312
>pdb|2C14|A Chain A, 5-(4-Carboxy-2-Oxo-Butylamino)-4-Oxo-Pentanoic Acid Acid
Bound To Porphobilinogen Synthase From Pseudomonas
Aeruginosa
pdb|2C14|B Chain B, 5-(4-Carboxy-2-Oxo-Butylamino)-4-Oxo-Pentanoic Acid Acid
Bound To Porphobilinogen Synthase From Pseudomonas
Aeruginosa
pdb|2C16|A Chain A, 5-(4-Carboxy-2-Oxo-Butane-1-Sulfinyl)-4-Oxo-Pentanoic Acid
Acid Bound To Porphobilinogen Synthase From Pseudomonas
Aeruginosa
pdb|2C16|B Chain B, 5-(4-Carboxy-2-Oxo-Butane-1-Sulfinyl)-4-Oxo-Pentanoic Acid
Acid Bound To Porphobilinogen Synthase From Pseudomonas
Aeruginosa
pdb|2C19|A Chain A, 5-(4-Carboxy-2-Oxo-Butylsulfanyl)-4-Oxo-Pentanoic Acid
Acid Bound To Porphobilinogen Synthase From Pseudomonas
Aeruginosa
pdb|2C19|B Chain B, 5-(4-Carboxy-2-Oxo-Butylsulfanyl)-4-Oxo-Pentanoic Acid
Acid Bound To Porphobilinogen Synthase From Pseudomonas
Aeruginosa
Length = 337
Score = 132 bits (331), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 90/278 (32%), Positives = 141/278 (50%), Gaps = 57/278 (20%)
Query: 25 IRKQFPSLTIACDVCLCGYTSHGHCAIFNEDGSIHYEKTLKRLADISKAFSDAGAHIVAP 84
+R++FP L I DV L +T+HG I ++DG + + ++ L + + ++AGA +VAP
Sbjct: 115 LRERFPELGIITDVALDPFTTHGQDGILDDDGYVLNDVSIDVLVRQALSHAEAGAQVVAP 174
Query: 85 SDMMDNRIHAIKQSLFTSRQSSTTGLLSYSAKFCSAFYGPFREAAGSAPTF--GDRSCYQ 142
SDMMD RI AI+++L ++ ++ +++YSA + SA+YGPFR+A GSA G+++ YQ
Sbjct: 175 SDMMDGRIGAIREALESAGHTNVR-VMAYSAXYASAYYGPFRDAVGSASNLGKGNKATYQ 233
Query: 143 LPCGSKGLAIRAAVCLCGYTSHGHCAIFNEDGSIHYEKTLKRLADISKAFSDAVYVPNHN 202
+ N D ++H
Sbjct: 234 MDPA------------------------NSDEALHE------------------------ 245
Query: 203 TDRFQARDVSQGADFLMVKPALPYLDIISEVKSRHPAYPLFVYQVSGEYXXXXXXXXXXX 262
A D+++GAD +MVKP +PYLDI+ VK A P FVYQVSGEY
Sbjct: 246 ----VAADLAEGADMVMVKPGMPYLDIVRRVKDEFRA-PTFVYQVSGEY-AMHMGAIQNG 299
Query: 263 XXXKRALMETLTCLRRGGADVIISYYTPRVLEWLREDK 300
+ ++E+LT +R GAD I++Y+ + E LR +
Sbjct: 300 WLAESVILESLTAFKRAGADGILTYFAKQAAEQLRRGR 337
>pdb|2C13|A Chain A, 5-Hydroxy-Levulinic Acid Bound To Porphobilinogen Synthase
From Pseudomonas Aeruginosa
pdb|2C13|B Chain B, 5-Hydroxy-Levulinic Acid Bound To Porphobilinogen Synthase
From Pseudomonas Aeruginosa
Length = 337
Score = 129 bits (325), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 89/278 (32%), Positives = 140/278 (50%), Gaps = 57/278 (20%)
Query: 25 IRKQFPSLTIACDVCLCGYTSHGHCAIFNEDGSIHYEKTLKRLADISKAFSDAGAHIVAP 84
+R++FP L I DV L +T+HG I ++DG + + ++ L + + ++AGA +VAP
Sbjct: 115 LRERFPELGIITDVALDPFTTHGQDGILDDDGYVLNDVSIDVLVRQALSHAEAGAQVVAP 174
Query: 85 SDMMDNRIHAIKQSLFTSRQSSTTGLLSYSAKFCSAFYGPFREAAGSAPTF--GDRSCYQ 142
SDMMD RI AI+++L ++ ++ +++YSA + SA+YGPFR+A GSA G+++ YQ
Sbjct: 175 SDMMDGRIGAIREALESAGHTNVR-VMAYSAXYASAYYGPFRDAVGSASNLGKGNKATYQ 233
Query: 143 LPCGSKGLAIRAAVCLCGYTSHGHCAIFNEDGSIHYEKTLKRLADISKAFSDAVYVPNHN 202
+ N D ++H
Sbjct: 234 MDPA------------------------NSDEALHE------------------------ 245
Query: 203 TDRFQARDVSQGADFLMVKPALPYLDIISEVKSRHPAYPLFVYQVSGEYXXXXXXXXXXX 262
A D+++GAD +MV P +PYLDI+ VK A P FVYQVSGEY
Sbjct: 246 ----VAADLAEGADMVMVXPGMPYLDIVRRVKDEFRA-PTFVYQVSGEY-AMHMGAIQNG 299
Query: 263 XXXKRALMETLTCLRRGGADVIISYYTPRVLEWLREDK 300
+ ++E+LT +R GAD I++Y+ + E LR +
Sbjct: 300 WLAESVILESLTAFKRAGADGILTYFAKQAAEQLRRGR 337
>pdb|3OBK|A Chain A, Crystal Structure Of Delta-Aminolevulinic Acid Dehydratase
(Porphobilinogen Synthase) From Toxoplasma Gondii Me49
In Complex With The Reaction Product Porphobilinogen
pdb|3OBK|B Chain B, Crystal Structure Of Delta-Aminolevulinic Acid Dehydratase
(Porphobilinogen Synthase) From Toxoplasma Gondii Me49
In Complex With The Reaction Product Porphobilinogen
pdb|3OBK|C Chain C, Crystal Structure Of Delta-Aminolevulinic Acid Dehydratase
(Porphobilinogen Synthase) From Toxoplasma Gondii Me49
In Complex With The Reaction Product Porphobilinogen
pdb|3OBK|D Chain D, Crystal Structure Of Delta-Aminolevulinic Acid Dehydratase
(Porphobilinogen Synthase) From Toxoplasma Gondii Me49
In Complex With The Reaction Product Porphobilinogen
pdb|3OBK|E Chain E, Crystal Structure Of Delta-Aminolevulinic Acid Dehydratase
(Porphobilinogen Synthase) From Toxoplasma Gondii Me49
In Complex With The Reaction Product Porphobilinogen
pdb|3OBK|F Chain F, Crystal Structure Of Delta-Aminolevulinic Acid Dehydratase
(Porphobilinogen Synthase) From Toxoplasma Gondii Me49
In Complex With The Reaction Product Porphobilinogen
pdb|3OBK|G Chain G, Crystal Structure Of Delta-Aminolevulinic Acid Dehydratase
(Porphobilinogen Synthase) From Toxoplasma Gondii Me49
In Complex With The Reaction Product Porphobilinogen
pdb|3OBK|H Chain H, Crystal Structure Of Delta-Aminolevulinic Acid Dehydratase
(Porphobilinogen Synthase) From Toxoplasma Gondii Me49
In Complex With The Reaction Product Porphobilinogen
Length = 356
Score = 89.4 bits (220), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 53/144 (36%), Positives = 82/144 (56%), Gaps = 3/144 (2%)
Query: 2 DLRDETASFADTPDNPLFQVIPMIRKQFPSLTIACDVCLCGYTSHGHCAIFNED-GSIHY 60
+L+ A + PD L + I +++ FP + + DV L Y+S GH + +E G I
Sbjct: 99 ELKSVMAEESYNPDGLLPRAIMALKEAFPDVLLLADVALDPYSSMGHDGVVDEQSGKIVN 158
Query: 61 EKTLKRLADISKAFSDAGAHIVAPSDMMDNRIHAIKQSLFTSRQSSTTGLLSYSAKFCSA 120
+ T+ +L + + AGA +V PSDMMD R+ AI++SL + T +L+YS K+ S+
Sbjct: 159 DLTVHQLCKQAITLARAGADMVCPSDMMDGRVSAIRESL-DMEGCTDTSILAYSCKYASS 217
Query: 121 FYGPFREAAGSAPTFG-DRSCYQL 143
FYGPFR+A S G D+ YQ+
Sbjct: 218 FYGPFRDALDSHMVGGTDKKTYQM 241
Score = 74.3 bits (181), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 33/86 (38%), Positives = 47/86 (54%), Gaps = 1/86 (1%)
Query: 214 GADFLMVKPALPYLDIISEVKSRHPAYPLFVYQVSGEYXXXXXXXXXXXXXXKRALMETL 273
GAD LMVKP LPYLD++++++ + P+ Y VSGEY K ++E L
Sbjct: 260 GADMLMVKPGLPYLDVLAKIREKS-KLPMVAYHVSGEYAMLKAAAEKGYISEKDTVLEVL 318
Query: 274 TCLRRGGADVIISYYTPRVLEWLRED 299
RR GAD + +YY +W+ ED
Sbjct: 319 KSFRRAGADAVATYYAKEAAKWMVED 344
>pdb|2OFX|A Chain A, Crystal Structure Of The Apsk Domain Of Human Papss1 In
Complex With Adpmg And Paps
pdb|2OFX|B Chain B, Crystal Structure Of The Apsk Domain Of Human Papss1 In
Complex With Adpmg And Paps
Length = 207
Score = 30.8 bits (68), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 15/57 (26%), Positives = 32/57 (56%), Gaps = 13/57 (22%)
Query: 179 EKTLKRLADISKAFSDA------VYVPNHNTDRFQARDVSQGADFLMVKPALPYLDI 229
E+ ++R+A+++K F+DA ++ + DR AR + +GA +LP+ ++
Sbjct: 87 EENVRRIAEVAKLFADAGLVCITSFISPYTQDRNNARQIHEGA-------SLPFFEV 136
>pdb|2OFW|A Chain A, Crystal Structure Of The Apsk Domain Of Human Papss1
Complexed With 2 Aps Molecules
pdb|2OFW|B Chain B, Crystal Structure Of The Apsk Domain Of Human Papss1
Complexed With 2 Aps Molecules
pdb|2OFW|C Chain C, Crystal Structure Of The Apsk Domain Of Human Papss1
Complexed With 2 Aps Molecules
pdb|2OFW|D Chain D, Crystal Structure Of The Apsk Domain Of Human Papss1
Complexed With 2 Aps Molecules
pdb|2OFW|E Chain E, Crystal Structure Of The Apsk Domain Of Human Papss1
Complexed With 2 Aps Molecules
pdb|2OFW|F Chain F, Crystal Structure Of The Apsk Domain Of Human Papss1
Complexed With 2 Aps Molecules
pdb|2OFW|G Chain G, Crystal Structure Of The Apsk Domain Of Human Papss1
Complexed With 2 Aps Molecules
pdb|2OFW|H Chain H, Crystal Structure Of The Apsk Domain Of Human Papss1
Complexed With 2 Aps Molecules
Length = 208
Score = 30.4 bits (67), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 15/57 (26%), Positives = 32/57 (56%), Gaps = 13/57 (22%)
Query: 179 EKTLKRLADISKAFSDA------VYVPNHNTDRFQARDVSQGADFLMVKPALPYLDI 229
E+ ++R+A+++K F+DA ++ + DR AR + +GA +LP+ ++
Sbjct: 88 EENVRRIAEVAKLFADAGLVCITSFISPYTQDRNNARQIHEGA-------SLPFFEV 137
>pdb|2PEY|A Chain A, Crystal Strucutre Of Deletion Mutant Of Aps-Kinase Domain
Of Human Paps-Synthetase 1
pdb|2PEY|B Chain B, Crystal Strucutre Of Deletion Mutant Of Aps-Kinase Domain
Of Human Paps-Synthetase 1
pdb|2PEZ|A Chain A, Crystal Structrue Of Deletion Mutant Of Aps-Kinase Domain
Of Human Paps-Synthetase 1 In Complex With Cyclic Paps
And Dadp
pdb|2PEZ|B Chain B, Crystal Structrue Of Deletion Mutant Of Aps-Kinase Domain
Of Human Paps-Synthetase 1 In Complex With Cyclic Paps
And Dadp
Length = 179
Score = 30.4 bits (67), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 15/57 (26%), Positives = 32/57 (56%), Gaps = 13/57 (22%)
Query: 179 EKTLKRLADISKAFSDA------VYVPNHNTDRFQARDVSQGADFLMVKPALPYLDI 229
E+ ++R+A+++K F+DA ++ + DR AR + +GA +LP+ ++
Sbjct: 60 EENVRRIAEVAKLFADAGLVCITSFISPYTQDRNNARQIHEGA-------SLPFFEV 109
>pdb|1X6V|B Chain B, The Crystal Structure Of Human 3'-Phosphoadenosine-5'-
Phosphosulfate Synthetase 1
pdb|1X6V|A Chain A, The Crystal Structure Of Human 3'-Phosphoadenosine-5'-
Phosphosulfate Synthetase 1
pdb|1XJQ|B Chain B, Adp Complex Of Human Paps Synthetase 1
pdb|1XJQ|A Chain A, Adp Complex Of Human Paps Synthetase 1
pdb|1XNJ|B Chain B, Aps Complex Of Human Paps Synthetase 1
pdb|1XNJ|A Chain A, Aps Complex Of Human Paps Synthetase 1
Length = 630
Score = 30.4 bits (67), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 15/57 (26%), Positives = 32/57 (56%), Gaps = 13/57 (22%)
Query: 179 EKTLKRLADISKAFSDA------VYVPNHNTDRFQARDVSQGADFLMVKPALPYLDI 229
E+ ++R+A+++K F+DA ++ + DR AR + +GA +LP+ ++
Sbjct: 107 EENVRRIAEVAKLFADAGLVCITSFISPYTQDRNNARQIHEGA-------SLPFFEV 156
>pdb|1WDK|C Chain C, Fatty Acid Beta-Oxidation Multienzyme Complex From
Pseudomonas Fragi, Form I (Native2)
pdb|1WDK|D Chain D, Fatty Acid Beta-Oxidation Multienzyme Complex From
Pseudomonas Fragi, Form I (Native2)
pdb|1WDL|C Chain C, Fatty Acid Beta-Oxidation Multienzyme Complex From
Pseudomonas Fragi, Form Ii (Native4)
pdb|1WDL|D Chain D, Fatty Acid Beta-Oxidation Multienzyme Complex From
Pseudomonas Fragi, Form Ii (Native4)
pdb|1WDM|C Chain C, Fatty Acid Beta-Oxidation Multienzyme Complex From
Pseudomonas Fragi, Form I (Native3)
pdb|1WDM|D Chain D, Fatty Acid Beta-Oxidation Multienzyme Complex From
Pseudomonas Fragi, Form I (Native3)
pdb|2D3T|C Chain C, Fatty Acid Beta-Oxidation Multienzyme Complex From
Pseudomonas Fragi, Form V
pdb|2D3T|D Chain D, Fatty Acid Beta-Oxidation Multienzyme Complex From
Pseudomonas Fragi, Form V
Length = 390
Score = 30.0 bits (66), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 25/46 (54%)
Query: 38 VCLCGYTSHGHCAIFNEDGSIHYEKTLKRLADISKAFSDAGAHIVA 83
+ + GY +G IF+ D +I + TL+ LA + AF+ G + A
Sbjct: 193 IPMQGYDENGFLKIFDYDETIRPDTTLESLAALKPAFNPKGGTVTA 238
Score = 29.6 bits (65), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 27/98 (27%), Positives = 46/98 (46%), Gaps = 9/98 (9%)
Query: 98 SLFTSRQSSTTGLLSYSAKFCSAFYGPFREAAGSAPTFGDRSCYQLP--CGSKGLAIRAA 155
SL+ ++ S G++ +A+ +G RE F RS +QL +G
Sbjct: 140 SLYAAKAS---GMMGLTAEMLGKMHGISRE---QQDAFAVRS-HQLAHKATVEGKFKDEI 192
Query: 156 VCLCGYTSHGHCAIFNEDGSIHYEKTLKRLADISKAFS 193
+ + GY +G IF+ D +I + TL+ LA + AF+
Sbjct: 193 IPMQGYDENGFLKIFDYDETIRPDTTLESLAALKPAFN 230
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.136 0.420
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,620,916
Number of Sequences: 62578
Number of extensions: 328627
Number of successful extensions: 814
Number of sequences better than 100.0: 32
Number of HSP's better than 100.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 685
Number of HSP's gapped (non-prelim): 88
length of query: 300
length of database: 14,973,337
effective HSP length: 98
effective length of query: 202
effective length of database: 8,840,693
effective search space: 1785819986
effective search space used: 1785819986
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 51 (24.3 bits)