Query psy15126
Match_columns 300
No_of_seqs 195 out of 1605
Neff 3.5
Searched_HMMs 46136
Date Fri Aug 16 21:15:25 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy15126.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/15126hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd04824 eu_ALAD_PBGS_cysteine_ 100.0 9E-106 2E-110 756.0 21.1 243 2-296 77-320 (320)
2 cd00384 ALAD_PBGS Porphobilino 100.0 3E-105 7E-110 751.2 20.8 240 2-296 75-314 (314)
3 cd04823 ALAD_PBGS_aspartate_ri 100.0 1E-104 3E-109 748.9 20.9 241 2-297 80-320 (320)
4 COG0113 HemB Delta-aminolevuli 100.0 1E-104 3E-109 747.0 20.4 244 2-299 87-330 (330)
5 PRK09283 delta-aminolevulinic 100.0 2E-104 3E-109 749.3 21.0 241 2-297 83-323 (323)
6 PF00490 ALAD: Delta-aminolevu 100.0 8E-105 2E-109 751.4 17.7 241 2-296 83-324 (324)
7 PRK13384 delta-aminolevulinic 100.0 2E-103 5E-108 740.5 19.9 238 2-295 85-322 (322)
8 KOG2794|consensus 100.0 1.6E-94 3.5E-99 672.5 19.2 246 2-300 95-340 (340)
9 COG0113 HemB Delta-aminolevuli 100.0 7.7E-52 1.7E-56 390.0 10.7 189 59-299 55-265 (330)
10 cd04824 eu_ALAD_PBGS_cysteine_ 100.0 5.9E-51 1.3E-55 384.7 10.0 189 59-299 45-257 (320)
11 cd00384 ALAD_PBGS Porphobilino 100.0 9.2E-51 2E-55 382.8 10.3 188 59-299 45-252 (314)
12 PRK09283 delta-aminolevulinic 100.0 1.4E-50 3E-55 382.9 11.1 188 59-299 53-260 (323)
13 PRK13384 delta-aminolevulinic 100.0 1.6E-50 3.4E-55 382.1 10.2 189 59-300 55-262 (322)
14 PF00490 ALAD: Delta-aminolevu 100.0 1.3E-50 2.7E-55 383.4 7.0 189 59-299 51-262 (324)
15 cd04823 ALAD_PBGS_aspartate_ri 100.0 9.9E-50 2.1E-54 376.6 10.6 188 59-299 48-257 (320)
16 KOG2794|consensus 100.0 1.4E-39 3.1E-44 304.4 12.1 187 80-299 52-273 (340)
17 TIGR03128 RuMP_HxlA 3-hexulose 96.6 0.021 4.6E-07 49.6 10.0 68 12-104 35-103 (206)
18 cd08148 RuBisCO_large Ribulose 96.4 0.018 3.9E-07 56.8 9.2 138 62-286 140-286 (366)
19 cd08205 RuBisCO_IV_RLP Ribulos 96.4 0.014 3.1E-07 57.0 8.4 137 61-285 142-286 (367)
20 TIGR03326 rubisco_III ribulose 96.0 0.03 6.4E-07 56.1 8.5 140 61-287 156-305 (412)
21 cd08210 RLP_RrRLP Ribulose bis 96.0 0.07 1.5E-06 52.4 10.9 137 61-285 137-282 (364)
22 cd08209 RLP_DK-MTP-1-P-enolase 95.8 0.039 8.4E-07 54.9 8.6 139 62-286 137-284 (391)
23 cd08207 RLP_NonPhot Ribulose b 95.6 0.062 1.3E-06 53.7 9.0 138 61-286 155-300 (406)
24 PRK04208 rbcL ribulose bisopho 95.6 0.048 1E-06 55.5 8.2 140 61-286 172-321 (468)
25 cd08206 RuBisCO_large_I_II_III 95.6 0.055 1.2E-06 54.2 8.5 140 61-286 144-293 (414)
26 cd04726 KGPDC_HPS 3-Keto-L-gul 95.5 0.29 6.2E-06 42.2 11.6 63 19-104 41-104 (202)
27 TIGR00222 panB 3-methyl-2-oxob 95.3 0.74 1.6E-05 43.9 14.7 140 18-247 63-203 (263)
28 PRK05718 keto-hydroxyglutarate 95.3 0.058 1.3E-06 49.3 7.1 35 211-245 125-161 (212)
29 cd08213 RuBisCO_large_III Ribu 95.1 0.11 2.3E-06 52.2 8.7 139 61-286 143-291 (412)
30 cd06556 ICL_KPHMT Members of t 95.0 0.45 9.7E-06 44.3 12.2 138 18-247 60-199 (240)
31 PRK09549 mtnW 2,3-diketo-5-met 95.0 0.12 2.6E-06 51.8 8.8 140 61-286 146-294 (407)
32 cd06557 KPHMT-like Ketopantoat 94.8 1.4 3E-05 41.6 14.8 139 18-247 60-201 (254)
33 TIGR03332 salvage_mtnW 2,3-dik 94.5 0.14 3.1E-06 51.3 7.9 140 61-286 151-299 (407)
34 PF00478 IMPDH: IMP dehydrogen 94.1 0.16 3.5E-06 50.1 7.3 58 211-288 117-178 (352)
35 PRK00311 panB 3-methyl-2-oxobu 94.1 2.3 5.1E-05 40.3 14.7 141 18-247 63-204 (264)
36 cd00377 ICL_PEPM Members of th 93.8 0.99 2.1E-05 41.6 11.5 60 211-290 170-229 (243)
37 PF00016 RuBisCO_large: Ribulo 93.0 0.14 3E-06 49.7 4.7 138 62-286 27-175 (309)
38 cd08212 RuBisCO_large_I Ribulo 92.8 0.4 8.7E-06 48.7 7.9 140 61-287 157-306 (450)
39 PRK05096 guanosine 5'-monophos 92.8 0.41 8.8E-06 47.4 7.7 55 212-286 120-178 (346)
40 PRK05718 keto-hydroxyglutarate 92.7 2 4.4E-05 39.3 11.7 126 58-297 20-147 (212)
41 CHL00040 rbcL ribulose-1,5-bis 92.6 0.1 2.3E-06 53.2 3.5 138 61-284 179-326 (475)
42 cd08208 RLP_Photo Ribulose bis 92.5 0.69 1.5E-05 46.8 9.0 138 61-286 172-317 (424)
43 TIGR00683 nanA N-acetylneurami 92.4 1.3 2.8E-05 41.6 10.2 82 170-288 12-104 (290)
44 TIGR03249 KdgD 5-dehydro-4-deo 92.2 1.3 2.9E-05 41.3 10.0 81 170-288 17-107 (296)
45 TIGR01182 eda Entner-Doudoroff 92.1 3.5 7.6E-05 37.8 12.3 121 58-292 13-133 (204)
46 TIGR02320 PEP_mutase phosphoen 91.9 2.8 6.1E-05 40.1 11.9 68 211-281 179-263 (285)
47 cd03174 DRE_TIM_metallolyase D 91.7 8.9 0.00019 34.1 14.2 42 211-253 156-203 (265)
48 PRK07028 bifunctional hexulose 91.5 3.1 6.7E-05 41.0 12.1 63 19-104 45-108 (430)
49 cd00945 Aldolase_Class_I Class 91.3 2.9 6.3E-05 34.8 10.1 38 211-248 75-122 (201)
50 cd00452 KDPG_aldolase KDPG and 91.1 3.6 7.9E-05 36.0 10.9 60 211-290 114-174 (190)
51 PF00701 DHDPS: Dihydrodipicol 90.9 2.1 4.5E-05 39.6 9.7 82 170-288 13-104 (289)
52 PRK13307 bifunctional formalde 90.8 4.8 0.0001 40.3 12.7 63 19-104 214-277 (391)
53 PRK07534 methionine synthase I 90.6 15 0.00032 35.9 15.6 82 16-104 85-171 (336)
54 TIGR00674 dapA dihydrodipicoli 90.4 2.8 6.1E-05 38.9 10.1 82 170-288 10-101 (285)
55 TIGR02319 CPEP_Pphonmut carbox 90.4 1 2.3E-05 43.3 7.5 69 211-281 175-256 (294)
56 PRK04147 N-acetylneuraminate l 90.2 3 6.6E-05 38.9 10.2 82 170-288 15-107 (293)
57 PRK00278 trpC indole-3-glycero 90.0 11 0.00023 35.3 13.5 158 67-289 72-242 (260)
58 PRK06843 inosine 5-monophospha 89.8 1.1 2.3E-05 45.2 7.2 58 211-288 162-223 (404)
59 cd00954 NAL N-Acetylneuraminic 89.8 3.2 7E-05 38.6 10.0 81 170-287 12-103 (288)
60 TIGR02313 HpaI-NOT-DapA 2,4-di 89.7 3.4 7.3E-05 38.9 10.2 82 170-288 12-103 (294)
61 cd00951 KDGDH 5-dehydro-4-deox 89.7 3.3 7.3E-05 38.7 10.1 81 170-288 12-102 (289)
62 cd00408 DHDPS-like Dihydrodipi 89.3 4.4 9.5E-05 37.0 10.3 82 170-288 9-100 (281)
63 PRK03620 5-dehydro-4-deoxygluc 89.3 3.9 8.4E-05 38.6 10.2 81 170-288 19-109 (303)
64 PRK06015 keto-hydroxyglutarate 88.7 7 0.00015 35.8 11.1 120 59-292 10-129 (201)
65 cd08211 RuBisCO_large_II Ribul 88.7 0.55 1.2E-05 47.7 4.4 139 61-286 169-321 (439)
66 TIGR01302 IMP_dehydrog inosine 88.6 1.7 3.6E-05 43.5 7.7 57 211-287 233-293 (450)
67 PLN02417 dihydrodipicolinate s 88.4 5.4 0.00012 37.2 10.4 82 170-288 13-104 (280)
68 PTZ00314 inosine-5'-monophosph 88.0 1.8 3.8E-05 44.2 7.5 56 211-286 250-309 (495)
69 TIGR01182 eda Entner-Doudoroff 87.7 5.2 0.00011 36.7 9.7 35 211-245 118-154 (204)
70 PRK06552 keto-hydroxyglutarate 87.5 23 0.00049 32.5 13.8 39 62-100 22-60 (213)
71 PRK13111 trpA tryptophan synth 87.5 2.1 4.4E-05 40.3 7.1 63 227-290 77-153 (258)
72 COG0329 DapA Dihydrodipicolina 87.5 5.9 0.00013 37.7 10.3 82 170-288 16-107 (299)
73 cd00950 DHDPS Dihydrodipicolin 87.0 6.7 0.00014 36.1 10.1 82 170-288 12-103 (284)
74 PF00072 Response_reg: Respons 86.6 5.4 0.00012 29.8 7.7 93 178-289 6-102 (112)
75 TIGR02313 HpaI-NOT-DapA 2,4-di 86.3 11 0.00023 35.6 11.2 38 211-248 92-136 (294)
76 PRK12999 pyruvate carboxylase; 86.3 22 0.00048 40.2 15.2 46 181-245 689-740 (1146)
77 PRK15063 isocitrate lyase; Pro 86.0 4.5 9.7E-05 41.3 9.0 41 211-252 275-318 (428)
78 cd00423 Pterin_binding Pterin 85.9 29 0.00063 32.0 13.7 70 62-135 21-106 (258)
79 PLN02274 inosine-5'-monophosph 85.6 2.6 5.6E-05 43.2 7.3 56 211-286 257-316 (505)
80 cd00408 DHDPS-like Dihydrodipi 85.5 14 0.0003 33.8 11.3 36 211-247 89-131 (281)
81 TIGR01303 IMP_DH_rel_1 IMP deh 85.2 2.4 5.2E-05 43.2 6.7 55 211-285 234-292 (475)
82 cd00951 KDGDH 5-dehydro-4-deox 85.2 13 0.00028 34.8 11.1 38 211-249 91-135 (289)
83 TIGR00683 nanA N-acetylneurami 84.9 14 0.00031 34.7 11.3 38 211-248 93-137 (290)
84 PRK03170 dihydrodipicolinate s 84.9 10 0.00022 35.2 10.2 82 170-288 13-104 (292)
85 PRK07807 inosine 5-monophospha 84.2 2.9 6.2E-05 42.7 6.8 55 211-285 236-294 (479)
86 TIGR01305 GMP_reduct_1 guanosi 84.0 4.1 8.8E-05 40.5 7.5 57 211-287 116-178 (343)
87 PF02548 Pantoate_transf: Keto 83.8 0.91 2E-05 43.4 2.9 70 212-297 34-125 (261)
88 PRK05458 guanosine 5'-monophos 83.8 4.1 8.9E-05 39.8 7.4 57 211-287 106-168 (326)
89 PTZ00314 inosine-5'-monophosph 82.6 8.6 0.00019 39.3 9.5 58 211-288 300-374 (495)
90 COG0646 MetH Methionine syntha 82.5 6.3 0.00014 38.8 8.1 174 24-247 7-196 (311)
91 PRK08645 bifunctional homocyst 82.4 68 0.0015 33.6 16.4 79 16-102 83-163 (612)
92 TIGR00262 trpA tryptophan synt 82.1 9.1 0.0002 35.7 8.7 64 227-291 75-152 (256)
93 PRK13475 ribulose bisphosphate 81.3 12 0.00026 38.4 9.8 139 61-286 170-322 (443)
94 cd00945 Aldolase_Class_I Class 80.7 15 0.00033 30.5 8.9 62 211-288 23-86 (201)
95 PRK03620 5-dehydro-4-deoxygluc 80.6 22 0.00048 33.6 10.8 38 211-249 98-142 (303)
96 PRK08444 hypothetical protein; 80.5 9.6 0.00021 37.3 8.6 79 179-284 79-165 (353)
97 cd00381 IMPDH IMPDH: The catal 80.4 6 0.00013 38.1 7.1 56 211-286 103-162 (325)
98 cd00959 DeoC 2-deoxyribose-5-p 80.4 41 0.00089 29.9 11.9 64 211-287 79-151 (203)
99 PRK11320 prpB 2-methylisocitra 80.3 7.4 0.00016 37.5 7.7 67 211-281 176-257 (292)
100 COG0413 PanB Ketopantoate hydr 80.2 6.4 0.00014 38.1 7.1 71 212-298 33-125 (268)
101 PRK07188 nicotinate phosphorib 79.2 7.7 0.00017 38.4 7.6 70 16-111 187-284 (352)
102 TIGR01302 IMP_dehydrog inosine 79.0 29 0.00062 34.9 11.6 59 211-288 283-357 (450)
103 TIGR01306 GMP_reduct_2 guanosi 78.9 15 0.00032 36.0 9.3 65 203-287 147-227 (321)
104 TIGR01306 GMP_reduct_2 guanosi 78.7 7.9 0.00017 37.9 7.4 57 211-287 103-165 (321)
105 TIGR02321 Pphn_pyruv_hyd phosp 78.2 11 0.00023 36.3 8.0 68 211-281 176-258 (290)
106 TIGR02317 prpB methylisocitrat 78.1 9.1 0.0002 36.8 7.5 69 211-281 171-252 (285)
107 PRK09206 pyruvate kinase; Prov 78.0 36 0.00079 35.1 12.2 117 74-286 181-311 (470)
108 PRK12581 oxaloacetate decarbox 78.0 78 0.0017 32.8 14.5 179 61-293 159-356 (468)
109 PLN02424 ketopantoate hydroxym 77.7 73 0.0016 31.8 13.7 142 18-247 83-225 (332)
110 PRK07114 keto-hydroxyglutarate 77.6 61 0.0013 30.2 12.7 130 58-297 20-153 (222)
111 cd00952 CHBPH_aldolase Trans-o 77.4 25 0.00053 33.5 10.1 52 173-246 23-84 (309)
112 PRK12999 pyruvate carboxylase; 77.4 39 0.00085 38.3 13.1 68 226-293 806-881 (1146)
113 PF13714 PEP_mutase: Phosphoen 76.7 14 0.0003 34.5 8.1 34 211-246 165-198 (238)
114 PRK09490 metH B12-dependent me 75.7 25 0.00055 40.3 11.1 181 59-288 286-488 (1229)
115 cd00958 DhnA Class I fructose- 75.1 57 0.0012 29.1 11.3 64 211-289 153-216 (235)
116 cd08205 RuBisCO_IV_RLP Ribulos 74.8 15 0.00033 36.2 8.2 65 211-292 156-235 (367)
117 cd00423 Pterin_binding Pterin 74.7 32 0.00069 31.8 9.9 71 211-287 34-127 (258)
118 TIGR03249 KdgD 5-dehydro-4-deo 74.5 35 0.00076 32.0 10.2 38 211-249 96-140 (296)
119 PF01081 Aldolase: KDPG and KH 73.4 25 0.00054 32.1 8.7 62 211-297 77-143 (196)
120 cd00739 DHPS DHPS subgroup of 73.3 49 0.0011 31.0 10.8 72 211-288 34-128 (257)
121 CHL00200 trpA tryptophan synth 72.6 13 0.00028 35.2 6.9 57 227-285 80-149 (263)
122 PRK09485 mmuM homocysteine met 72.4 86 0.0019 29.8 12.4 83 16-100 87-176 (304)
123 PRK07807 inosine 5-monophospha 71.9 7.5 0.00016 39.7 5.5 42 15-83 252-294 (479)
124 PRK01130 N-acetylmannosamine-6 71.9 16 0.00035 32.4 7.1 88 180-288 105-203 (221)
125 cd04724 Tryptophan_synthase_al 70.9 27 0.00059 32.0 8.5 62 227-290 65-140 (242)
126 TIGR01769 GGGP geranylgeranylg 70.7 8.6 0.00019 35.3 5.1 50 175-244 4-58 (205)
127 cd00331 IGPS Indole-3-glycerol 70.5 31 0.00066 30.5 8.4 90 180-289 108-203 (217)
128 PLN02424 ketopantoate hydroxym 70.4 9.1 0.0002 38.0 5.5 70 211-296 52-144 (332)
129 PRK07107 inosine 5-monophospha 70.0 14 0.00031 37.9 7.1 56 211-286 251-311 (502)
130 PRK05567 inosine 5'-monophosph 69.5 16 0.00034 37.0 7.2 56 211-286 237-296 (486)
131 PLN02591 tryptophan synthase 69.5 21 0.00045 33.6 7.5 62 227-290 67-142 (250)
132 COG0269 SgbH 3-hexulose-6-phos 69.0 6.8 0.00015 36.8 4.2 57 20-101 45-101 (217)
133 PRK00043 thiE thiamine-phospha 69.0 23 0.00049 30.6 7.2 56 211-286 121-187 (212)
134 PRK06552 keto-hydroxyglutarate 68.8 9.9 0.00021 34.8 5.1 60 185-245 101-161 (213)
135 PLN02417 dihydrodipicolinate s 68.8 62 0.0014 30.2 10.5 34 211-247 93-133 (280)
136 cd06556 ICL_KPHMT Members of t 68.8 34 0.00074 32.0 8.7 72 211-287 99-176 (240)
137 PRK00311 panB 3-methyl-2-oxobu 68.7 23 0.0005 33.7 7.7 72 211-287 103-181 (264)
138 cd02803 OYE_like_FMN_family Ol 68.0 9.6 0.00021 35.5 5.0 69 5-87 181-250 (327)
139 PRK05927 hypothetical protein; 67.5 9.7 0.00021 37.2 5.0 96 164-285 59-162 (350)
140 COG0159 TrpA Tryptophan syntha 67.4 29 0.00064 33.4 8.1 18 227-244 82-99 (265)
141 PRK07565 dihydroorotate dehydr 67.0 32 0.00069 32.9 8.3 61 211-288 124-198 (334)
142 cd06557 KPHMT-like Ketopantoat 66.7 27 0.00059 33.0 7.7 72 211-287 100-178 (254)
143 COG1794 RacX Aspartate racemas 66.2 40 0.00086 32.1 8.6 91 179-287 58-195 (230)
144 PRK11613 folP dihydropteroate 65.5 26 0.00057 33.6 7.5 70 211-287 48-140 (282)
145 PLN02489 homocysteine S-methyl 65.4 1.4E+02 0.003 29.1 16.0 71 31-103 132-206 (335)
146 PRK05926 hypothetical protein; 65.3 25 0.00054 34.7 7.5 52 226-285 133-184 (370)
147 PRK12330 oxaloacetate decarbox 64.6 27 0.00058 36.3 7.8 47 181-245 153-206 (499)
148 COG0320 LipA Lipoate synthase 64.5 8.3 0.00018 37.9 3.9 49 226-286 199-247 (306)
149 cd01572 QPRTase Quinolinate ph 64.4 34 0.00074 32.3 7.9 66 198-286 187-253 (268)
150 cd01573 modD_like ModD; Quinol 64.1 36 0.00078 32.2 8.0 70 197-287 187-258 (272)
151 PF02574 S-methyl_trans: Homoc 63.8 13 0.00028 34.8 5.0 85 15-101 81-172 (305)
152 PF09587 PGA_cap: Bacterial ca 63.5 87 0.0019 28.4 10.1 36 69-104 66-106 (250)
153 PRK09140 2-dehydro-3-deoxy-6-p 63.2 93 0.002 28.2 10.2 137 60-245 17-157 (206)
154 PRK09836 DNA-binding transcrip 62.0 35 0.00076 28.7 6.8 35 213-247 43-80 (227)
155 TIGR00736 nifR3_rel_arch TIM-b 61.7 37 0.00081 31.7 7.5 115 151-288 94-221 (231)
156 COG1646 Predicted phosphate-bi 61.6 11 0.00024 36.0 4.0 34 211-245 38-76 (240)
157 cd00452 KDPG_aldolase KDPG and 60.7 65 0.0014 28.2 8.5 82 211-297 26-138 (190)
158 TIGR00742 yjbN tRNA dihydrouri 60.6 50 0.0011 32.0 8.4 34 211-244 151-200 (318)
159 TIGR03551 F420_cofH 7,8-dideme 60.0 68 0.0015 30.8 9.2 81 179-285 69-156 (343)
160 PRK12376 putative translaldola 60.0 6.7 0.00015 36.8 2.3 68 10-84 66-143 (236)
161 PLN02591 tryptophan synthase 59.9 60 0.0013 30.6 8.6 31 62-92 13-48 (250)
162 PF02548 Pantoate_transf: Keto 59.8 25 0.00054 33.8 6.1 82 211-297 104-193 (261)
163 TIGR00284 dihydropteroate synt 59.6 39 0.00085 35.1 7.9 91 176-287 158-258 (499)
164 PRK07226 fructose-bisphosphate 59.6 55 0.0012 30.4 8.2 32 211-245 170-202 (267)
165 cd00953 KDG_aldolase KDG (2-ke 59.5 66 0.0014 30.0 8.8 59 211-286 30-97 (279)
166 TIGR00693 thiE thiamine-phosph 59.3 37 0.00081 29.2 6.7 57 211-287 113-180 (196)
167 PRK05692 hydroxymethylglutaryl 59.1 43 0.00093 31.8 7.6 27 58-84 19-45 (287)
168 COG1060 ThiH Thiamine biosynth 59.1 25 0.00055 35.0 6.3 98 167-293 76-184 (370)
169 cd00954 NAL N-Acetylneuraminic 59.0 25 0.00055 32.7 6.0 37 211-247 93-136 (288)
170 PRK13306 ulaD 3-keto-L-gulonat 58.8 40 0.00086 30.7 7.0 61 20-103 45-106 (216)
171 KOG2335|consensus 58.6 31 0.00067 34.7 6.8 179 81-289 22-235 (358)
172 PRK09234 fbiC FO synthase; Rev 58.2 43 0.00093 36.9 8.3 80 180-285 557-643 (843)
173 PRK10840 transcriptional regul 57.9 63 0.0014 27.7 7.8 65 213-277 48-124 (216)
174 PRK09490 metH B12-dependent me 57.6 38 0.00083 38.9 8.1 230 32-289 130-406 (1229)
175 TIGR00875 fsa_talC_mipB fructo 57.1 14 0.00031 33.9 3.9 92 11-111 60-161 (213)
176 PF09370 TIM-br_sig_trns: TIM- 56.9 17 0.00037 35.2 4.5 67 211-288 105-178 (268)
177 PRK06354 pyruvate kinase; Prov 56.4 1.7E+02 0.0038 31.1 12.1 80 175-287 226-318 (590)
178 TIGR01496 DHPS dihydropteroate 56.3 60 0.0013 30.4 7.9 73 211-287 33-125 (257)
179 COG2513 PrpB PEP phosphonomuta 56.0 19 0.00041 35.2 4.7 78 166-245 120-208 (289)
180 cd00377 ICL_PEPM Members of th 55.9 69 0.0015 29.6 8.2 106 174-289 50-182 (243)
181 TIGR02082 metH 5-methyltetrahy 55.8 3.8E+02 0.0082 31.0 16.6 71 19-91 93-174 (1178)
182 cd07938 DRE_TIM_HMGL 3-hydroxy 55.7 64 0.0014 30.4 8.1 27 58-84 13-39 (274)
183 KOG0369|consensus 55.4 1.3E+02 0.0028 33.7 11.0 157 39-247 586-770 (1176)
184 PRK10816 DNA-binding transcrip 55.3 1.2E+02 0.0027 25.3 9.0 49 212-260 42-93 (223)
185 PRK05458 guanosine 5'-monophos 54.4 19 0.00042 35.3 4.5 50 15-92 124-174 (326)
186 TIGR02082 metH 5-methyltetrahy 54.3 77 0.0017 36.3 9.7 42 59-100 270-313 (1178)
187 cd08556 GDPD Glycerophosphodie 53.9 63 0.0014 26.8 7.0 55 209-287 132-188 (189)
188 PRK13352 thiamine biosynthesis 53.8 34 0.00075 35.2 6.3 84 211-298 87-176 (431)
189 PF00290 Trp_syntA: Tryptophan 53.6 48 0.001 31.5 6.9 19 227-245 75-93 (259)
190 cd01945 ribokinase_group_B Rib 53.5 1.6E+02 0.0036 26.1 12.3 37 68-104 40-77 (284)
191 PTZ00300 pyruvate kinase; Prov 53.4 77 0.0017 32.6 8.8 90 175-297 194-303 (454)
192 PRK07428 nicotinate-nucleotide 53.2 69 0.0015 31.0 8.0 72 196-288 199-272 (288)
193 PRK07360 FO synthase subunit 2 53.0 31 0.00067 33.7 5.7 52 226-285 127-178 (371)
194 PRK01130 N-acetylmannosamine-6 52.7 50 0.0011 29.3 6.5 54 211-286 85-145 (221)
195 PRK01362 putative translaldola 52.6 18 0.0004 33.3 3.9 92 11-111 60-161 (214)
196 KOG2550|consensus 52.6 22 0.00049 36.9 4.8 59 208-286 257-319 (503)
197 PRK09282 pyruvate carboxylase 51.8 3.2E+02 0.0069 29.0 16.1 68 226-293 269-344 (592)
198 PRK12331 oxaloacetate decarbox 51.6 58 0.0013 33.2 7.6 46 181-245 152-203 (448)
199 cd08210 RLP_RrRLP Ribulose bis 51.6 91 0.002 31.0 8.7 79 181-294 139-232 (364)
200 PRK07695 transcriptional regul 51.3 69 0.0015 28.1 7.1 56 211-287 112-177 (201)
201 PRK10336 DNA-binding transcrip 51.3 74 0.0016 26.2 7.0 49 213-261 43-94 (219)
202 PRK12656 fructose-6-phosphate 51.1 20 0.00044 33.3 4.0 93 11-111 63-165 (222)
203 PRK14042 pyruvate carboxylase 50.4 65 0.0014 34.2 7.9 46 181-245 152-203 (596)
204 PRK08649 inosine 5-monophospha 50.4 31 0.00068 34.2 5.3 64 202-287 142-215 (368)
205 PRK00230 orotidine 5'-phosphat 50.3 1.2E+02 0.0025 27.8 8.7 108 180-290 44-158 (230)
206 PF09505 Dimeth_Pyl: Dimethyla 50.1 10 0.00023 38.3 2.0 72 5-84 211-285 (466)
207 PRK04180 pyridoxal biosynthesi 50.1 33 0.00072 33.7 5.3 53 211-287 93-148 (293)
208 cd00381 IMPDH IMPDH: The catal 50.0 64 0.0014 31.2 7.2 60 208-286 150-225 (325)
209 cd07940 DRE_TIM_IPMS 2-isoprop 49.8 97 0.0021 28.6 8.2 43 211-254 153-203 (268)
210 TIGR03332 salvage_mtnW 2,3-dik 49.7 1.1E+02 0.0025 31.0 9.2 84 180-298 152-253 (407)
211 COG2040 MHT1 Homocysteine/sele 49.6 15 0.00032 36.2 2.9 26 262-287 38-63 (300)
212 PF04898 Glu_syn_central: Glut 49.6 31 0.00068 33.5 5.1 55 57-111 134-198 (287)
213 PRK08385 nicotinate-nucleotide 49.5 59 0.0013 31.3 6.8 61 18-105 169-229 (278)
214 PRK09468 ompR osmolarity respo 49.3 1.6E+02 0.0035 25.0 8.9 49 212-260 47-98 (239)
215 cd00952 CHBPH_aldolase Trans-o 49.2 43 0.00092 31.9 5.9 37 211-247 100-143 (309)
216 PRK14041 oxaloacetate decarbox 49.1 67 0.0015 33.1 7.6 46 181-245 151-202 (467)
217 TIGR00343 pyridoxal 5'-phospha 48.9 38 0.00083 33.1 5.5 53 211-287 86-141 (287)
218 cd04727 pdxS PdxS is a subunit 48.8 45 0.00098 32.6 6.0 54 211-284 25-91 (283)
219 TIGR00222 panB 3-methyl-2-oxob 48.6 20 0.00044 34.3 3.6 41 60-100 155-195 (263)
220 cd02072 Glm_B12_BD B12 binding 48.4 24 0.00053 30.3 3.7 48 60-111 35-85 (128)
221 KOG1579|consensus 48.2 18 0.00038 35.9 3.2 22 266-287 52-73 (317)
222 PF00682 HMGL-like: HMGL-like 47.7 95 0.0021 27.6 7.5 59 211-285 147-211 (237)
223 PRK12581 oxaloacetate decarbox 47.2 82 0.0018 32.6 7.9 46 181-245 161-212 (468)
224 PRK11475 DNA-binding transcrip 46.9 58 0.0013 29.3 6.1 34 214-247 37-76 (207)
225 cd00564 TMP_TenI Thiamine mono 46.3 92 0.002 25.9 6.8 58 211-289 112-180 (196)
226 cd04729 NanE N-acetylmannosami 46.0 1.3E+02 0.0028 26.8 8.1 88 181-289 110-208 (219)
227 PRK11815 tRNA-dihydrouridine s 45.8 1E+02 0.0022 29.9 7.9 34 211-244 161-210 (333)
228 PRK10499 PTS system N,N'-diace 45.3 68 0.0015 26.3 5.7 57 213-282 49-106 (106)
229 COG5016 Pyruvate/oxaloacetate 45.2 69 0.0015 33.3 6.9 51 181-250 154-212 (472)
230 KOG0564|consensus 45.0 30 0.00065 36.6 4.4 76 155-259 149-230 (590)
231 PRK09958 DNA-binding transcrip 44.9 1.7E+02 0.0037 23.9 8.2 50 212-261 43-95 (204)
232 cd00950 DHDPS Dihydrodipicolin 44.8 58 0.0013 30.0 5.9 36 211-247 92-134 (284)
233 TIGR00696 wecB_tagA_cpsF bacte 44.8 61 0.0013 28.9 5.8 68 212-294 46-114 (177)
234 PRK11083 DNA-binding response 44.6 94 0.002 25.7 6.6 50 212-261 45-97 (228)
235 TIGR00078 nadC nicotinate-nucl 44.5 1.2E+02 0.0025 28.8 7.9 54 211-286 195-249 (265)
236 cd04722 TIM_phosphate_binding 44.4 85 0.0019 25.4 6.2 37 211-247 81-122 (200)
237 PRK04147 N-acetylneuraminate l 44.1 55 0.0012 30.6 5.7 36 211-247 96-138 (293)
238 PRK14040 oxaloacetate decarbox 43.9 98 0.0021 32.8 8.0 46 181-245 153-204 (593)
239 PRK09390 fixJ response regulat 43.6 1.1E+02 0.0025 24.2 6.7 48 213-260 46-96 (202)
240 PRK10200 putative racemase; Pr 43.5 88 0.0019 28.6 6.8 48 239-286 34-81 (230)
241 TIGR03699 mena_SCO4550 menaqui 43.5 1.2E+02 0.0026 28.8 8.0 51 226-285 107-158 (340)
242 PRK12330 oxaloacetate decarbox 43.3 3.8E+02 0.0083 28.1 12.0 83 211-293 257-347 (499)
243 cd04729 NanE N-acetylmannosami 43.0 1.3E+02 0.0029 26.7 7.7 55 211-287 89-150 (219)
244 COG0626 MetC Cystathionine bet 42.9 73 0.0016 32.2 6.6 37 182-218 168-204 (396)
245 PF01791 DeoC: DeoC/LacD famil 42.7 1.6E+02 0.0035 26.5 8.3 63 211-292 156-233 (236)
246 TIGR01387 cztR_silR_copR heavy 42.6 1.1E+02 0.0024 25.1 6.7 49 213-261 41-92 (218)
247 PRK12653 fructose-6-phosphate 42.5 33 0.00071 31.8 3.9 92 11-111 62-163 (220)
248 TIGR01108 oadA oxaloacetate de 42.4 95 0.0021 32.8 7.6 46 181-245 147-198 (582)
249 cd02810 DHOD_DHPD_FMN Dihydroo 42.3 93 0.002 28.6 6.8 45 227-290 230-275 (289)
250 cd01568 QPRTase_NadC Quinolina 42.3 1.3E+02 0.0027 28.5 7.8 54 211-286 198-254 (269)
251 PRK14042 pyruvate carboxylase 41.7 66 0.0014 34.2 6.4 80 212-291 255-342 (596)
252 TIGR03700 mena_SCO4494 putativ 41.6 1.1E+02 0.0023 29.7 7.3 52 226-285 114-165 (351)
253 cd02803 OYE_like_FMN_family Ol 41.5 2.5E+02 0.0054 26.2 9.6 61 17-82 31-94 (327)
254 cd07945 DRE_TIM_CMS Leptospira 41.3 1.5E+02 0.0032 28.1 8.1 42 211-253 157-204 (280)
255 PRK09483 response regulator; P 41.1 2.1E+02 0.0045 23.7 8.2 50 212-261 45-97 (217)
256 TIGR00640 acid_CoA_mut_C methy 41.1 37 0.00081 28.8 3.7 47 61-111 39-88 (132)
257 cd07943 DRE_TIM_HOA 4-hydroxy- 41.1 1.6E+02 0.0036 27.0 8.2 27 58-84 15-41 (263)
258 TIGR01305 GMP_reduct_1 guanosi 41.1 97 0.0021 31.1 7.1 58 211-287 168-241 (343)
259 TIGR00674 dapA dihydrodipicoli 41.0 73 0.0016 29.6 6.0 36 211-247 90-132 (285)
260 PRK07535 methyltetrahydrofolat 41.0 82 0.0018 29.6 6.3 71 211-287 35-123 (261)
261 PRK13669 hypothetical protein; 41.0 56 0.0012 26.4 4.5 53 18-77 16-74 (78)
262 cd02810 DHOD_DHPD_FMN Dihydroo 41.0 1.7E+02 0.0036 26.9 8.2 62 211-287 121-196 (289)
263 PRK09282 pyruvate carboxylase 40.9 99 0.0021 32.7 7.5 46 181-245 152-203 (592)
264 PRK08195 4-hyroxy-2-oxovalerat 40.7 1.5E+02 0.0032 29.0 8.2 28 57-84 17-44 (337)
265 PF04131 NanE: Putative N-acet 40.6 65 0.0014 29.9 5.4 47 8-84 72-118 (192)
266 COG2197 CitB Response regulato 40.4 1.8E+02 0.0038 26.1 8.1 69 212-281 44-121 (211)
267 cd04733 OYE_like_2_FMN Old yel 40.3 45 0.00097 31.9 4.5 68 5-86 189-257 (338)
268 PLN02334 ribulose-phosphate 3- 40.2 1.7E+02 0.0038 26.3 8.1 26 65-91 20-45 (229)
269 TIGR00035 asp_race aspartate r 40.1 1.1E+02 0.0024 27.6 6.8 60 239-298 34-95 (229)
270 PF02679 ComA: (2R)-phospho-3- 40.0 26 0.00057 33.3 2.9 78 201-288 84-168 (244)
271 PRK08185 hypothetical protein; 40.0 1.4E+02 0.0031 28.8 7.8 65 211-277 158-243 (283)
272 TIGR01303 IMP_DH_rel_1 IMP deh 40.0 54 0.0012 33.6 5.3 42 16-83 251-292 (475)
273 PRK07259 dihydroorotate dehydr 39.9 1.9E+02 0.0042 26.9 8.6 44 227-290 223-266 (301)
274 PRK00865 glutamate racemase; P 39.8 3.1E+02 0.0068 25.4 12.2 22 266-287 163-184 (261)
275 PTZ00170 D-ribulose-5-phosphat 39.3 27 0.00059 31.9 2.8 22 19-42 53-74 (228)
276 TIGR01501 MthylAspMutase methy 39.3 38 0.00083 29.3 3.6 48 60-111 37-87 (134)
277 cd02809 alpha_hydroxyacid_oxid 39.2 1.4E+02 0.0031 28.1 7.7 62 208-288 187-257 (299)
278 PF04551 GcpE: GcpE protein; 39.1 1.8E+02 0.004 29.4 8.7 73 211-285 41-136 (359)
279 TIGR01108 oadA oxaloacetate de 38.9 72 0.0016 33.6 6.1 56 238-293 282-339 (582)
280 PRK10643 DNA-binding transcrip 38.7 1.6E+02 0.0034 24.3 7.0 49 213-261 43-94 (222)
281 COG0413 PanB Ketopantoate hydr 38.7 2.6E+02 0.0056 27.4 9.3 135 22-245 67-202 (268)
282 PLN02540 methylenetetrahydrofo 38.2 5.3E+02 0.011 27.6 13.9 78 211-288 166-269 (565)
283 PRK12655 fructose-6-phosphate 38.1 40 0.00087 31.3 3.8 91 12-111 63-163 (220)
284 PF06080 DUF938: Protein of un 37.9 4.4 9.6E-05 37.4 -2.5 73 90-203 122-198 (204)
285 PRK00115 hemE uroporphyrinogen 37.8 42 0.00091 32.1 4.0 68 17-87 122-208 (346)
286 COG1570 XseA Exonuclease VII, 37.8 1.4E+02 0.0031 30.9 7.9 54 226-290 149-203 (440)
287 PRK05848 nicotinate-nucleotide 37.6 1.4E+02 0.003 28.7 7.3 55 16-97 166-221 (273)
288 PLN02433 uroporphyrinogen deca 37.5 38 0.00082 32.5 3.6 73 17-90 115-204 (345)
289 PRK09549 mtnW 2,3-diketo-5-met 37.3 2.8E+02 0.006 28.3 9.8 83 181-298 148-248 (407)
290 TIGR00190 thiC thiamine biosyn 37.0 72 0.0016 32.9 5.6 82 211-298 87-173 (423)
291 TIGR01235 pyruv_carbox pyruvat 36.9 1.1E+02 0.0024 34.9 7.6 46 181-245 687-738 (1143)
292 TIGR02320 PEP_mutase phosphoen 36.8 1.4E+02 0.0029 28.8 7.2 99 174-287 59-189 (285)
293 TIGR01949 AroFGH_arch predicte 36.6 2E+02 0.0043 26.4 8.0 31 211-244 166-197 (258)
294 PRK10046 dpiA two-component re 36.4 1.4E+02 0.0031 26.0 6.7 51 211-261 47-100 (225)
295 PRK15479 transcriptional regul 36.2 1.9E+02 0.004 23.8 7.1 49 213-261 43-94 (221)
296 PF02574 S-methyl_trans: Homoc 35.8 37 0.00079 31.8 3.2 23 265-287 39-61 (305)
297 PF06838 Met_gamma_lyase: Meth 35.6 44 0.00095 34.2 3.8 30 17-46 176-205 (403)
298 PRK05742 nicotinate-nucleotide 35.5 1.8E+02 0.0039 27.9 7.8 68 198-288 194-262 (277)
299 PRK08508 biotin synthase; Prov 35.5 2.1E+02 0.0046 26.8 8.1 41 226-285 77-117 (279)
300 PF12010 DUF3502: Domain of un 35.4 67 0.0015 27.1 4.4 74 226-299 48-133 (134)
301 TIGR00737 nifR3_yhdG putative 35.3 1.5E+02 0.0032 28.1 7.1 48 227-287 120-167 (319)
302 PRK06015 keto-hydroxyglutarate 35.2 90 0.002 28.7 5.5 60 185-245 89-150 (201)
303 PF03808 Glyco_tran_WecB: Glyc 35.1 1E+02 0.0022 26.8 5.5 68 212-293 46-114 (172)
304 TIGR02154 PhoB phosphate regul 35.0 1.7E+02 0.0037 24.1 6.7 50 212-261 44-98 (226)
305 cd07941 DRE_TIM_LeuA3 Desulfob 34.7 2E+02 0.0043 26.8 7.8 27 58-84 13-39 (273)
306 cd04727 pdxS PdxS is a subunit 34.4 91 0.002 30.5 5.6 54 211-288 84-140 (283)
307 cd01571 NAPRTase_B Nicotinate 33.8 90 0.002 30.0 5.5 68 18-111 170-249 (302)
308 cd00957 Transaldolase_TalAB Tr 33.7 42 0.00092 32.8 3.3 47 63-111 154-221 (313)
309 cd00959 DeoC 2-deoxyribose-5-p 33.7 2.8E+02 0.0062 24.6 8.3 63 212-288 28-90 (203)
310 cd07939 DRE_TIM_NifV Streptomy 33.6 2.4E+02 0.0051 25.9 8.0 26 59-84 14-39 (259)
311 PRK00881 purH bifunctional pho 33.5 24 0.00052 36.9 1.7 71 70-148 37-130 (513)
312 cd08209 RLP_DK-MTP-1-P-enolase 33.5 3.2E+02 0.0069 27.7 9.4 83 181-298 138-238 (391)
313 PRK08255 salicylyl-CoA 5-hydro 33.2 6.3E+02 0.014 27.2 12.1 24 61-84 547-570 (765)
314 TIGR03128 RuMP_HxlA 3-hexulose 33.0 1E+02 0.0022 26.8 5.2 32 211-244 73-107 (206)
315 PF00701 DHDPS: Dihydrodipicol 32.8 88 0.0019 28.9 5.1 36 211-247 93-135 (289)
316 TIGR01163 rpe ribulose-phospha 32.6 2.3E+02 0.0049 24.3 7.3 35 211-246 21-67 (210)
317 PF01136 Peptidase_U32: Peptid 32.6 1.4E+02 0.0031 26.4 6.3 59 21-104 26-85 (233)
318 PLN02746 hydroxymethylglutaryl 32.6 2.2E+02 0.0048 28.2 8.1 70 181-284 195-270 (347)
319 PF01964 ThiC: ThiC family; I 32.5 3.3E+02 0.0071 28.3 9.3 79 211-297 86-171 (420)
320 PRK06739 pyruvate kinase; Vali 32.5 5.2E+02 0.011 25.9 13.2 129 74-298 174-323 (352)
321 KOG1606|consensus 32.1 87 0.0019 30.3 5.0 76 211-288 38-153 (296)
322 TIGR01334 modD putative molybd 31.9 1.1E+02 0.0024 29.5 5.7 58 17-101 174-231 (277)
323 cd07937 DRE_TIM_PC_TC_5S Pyruv 31.9 2.4E+02 0.0052 26.4 7.8 69 181-284 147-221 (275)
324 PRK06096 molybdenum transport 31.6 1.1E+02 0.0024 29.6 5.7 57 17-100 175-231 (284)
325 TIGR03217 4OH_2_O_val_ald 4-hy 31.5 2.4E+02 0.0051 27.6 8.0 28 57-84 16-43 (333)
326 cd00956 Transaldolase_FSA Tran 31.4 65 0.0014 29.3 3.9 86 12-104 61-156 (211)
327 PRK05848 nicotinate-nucleotide 31.4 55 0.0012 31.3 3.6 59 212-291 148-214 (273)
328 PRK03170 dihydrodipicolinate s 31.3 1.3E+02 0.0029 27.8 6.1 36 211-247 93-135 (292)
329 PF06506 PrpR_N: Propionate ca 31.2 59 0.0013 28.2 3.5 69 218-287 57-132 (176)
330 PRK00865 glutamate racemase; P 31.2 1.3E+02 0.0029 27.8 6.0 52 21-84 20-73 (261)
331 TIGR00874 talAB transaldolase. 31.2 55 0.0012 32.2 3.6 23 62-84 153-175 (317)
332 PLN02274 inosine-5'-monophosph 31.2 2.1E+02 0.0045 29.7 7.9 58 211-288 307-381 (505)
333 PRK07455 keto-hydroxyglutarate 31.2 66 0.0014 28.6 3.9 70 197-286 108-179 (187)
334 PRK12346 transaldolase A; Prov 30.9 51 0.0011 32.4 3.4 23 62-84 154-176 (316)
335 PLN02489 homocysteine S-methyl 30.8 44 0.00096 32.5 2.9 24 264-287 52-75 (335)
336 cd07944 DRE_TIM_HOA_like 4-hyd 30.7 3.2E+02 0.0069 25.6 8.4 26 59-84 14-39 (266)
337 PRK13558 bacterio-opsin activa 30.7 1.4E+02 0.003 30.4 6.6 50 212-261 49-101 (665)
338 PRK00507 deoxyribose-phosphate 30.6 2.7E+02 0.0059 25.7 7.9 66 211-297 146-218 (221)
339 cd02931 ER_like_FMN Enoate red 30.6 1.1E+02 0.0023 30.2 5.5 84 4-87 190-274 (382)
340 PRK11173 two-component respons 30.3 2.1E+02 0.0045 24.4 6.7 34 213-247 46-82 (237)
341 PRK09485 mmuM homocysteine met 30.3 45 0.00099 31.7 2.9 25 263-287 42-66 (304)
342 cd08601 GDPD_SaGlpQ_like Glyce 30.2 2.1E+02 0.0046 25.8 7.0 61 212-296 193-255 (256)
343 TIGR02990 ectoine_eutA ectoine 30.2 2E+02 0.0044 26.8 7.0 45 212-257 179-224 (239)
344 cd07409 MPP_CD73_N CD73 ecto-5 30.1 60 0.0013 30.2 3.6 26 262-287 164-189 (281)
345 TIGR00612 ispG_gcpE 1-hydroxy- 30.1 5.1E+02 0.011 26.3 10.0 71 211-283 44-124 (346)
346 cd04734 OYE_like_3_FMN Old yel 29.8 1.1E+02 0.0023 29.7 5.4 69 4-86 180-250 (343)
347 COG2204 AtoC Response regulato 29.6 3.6E+02 0.0079 28.1 9.3 101 176-276 10-120 (464)
348 TIGR00725 conserved hypothetic 29.4 1.2E+02 0.0026 26.5 5.0 43 212-256 89-132 (159)
349 PRK08445 hypothetical protein; 29.2 3.9E+02 0.0084 26.1 9.0 52 226-285 108-159 (348)
350 PRK09240 thiH thiamine biosynt 28.8 2.9E+02 0.0062 27.1 8.1 56 211-287 117-180 (371)
351 PF04481 DUF561: Protein of un 28.6 1.5E+02 0.0033 28.5 5.9 62 211-288 78-153 (242)
352 PF03641 Lysine_decarbox: Poss 28.5 1.9E+02 0.0041 24.1 6.0 52 215-266 54-115 (133)
353 PF10881 DUF2726: Protein of u 28.5 1.7E+02 0.0036 23.8 5.6 54 38-101 71-124 (126)
354 TIGR00587 nfo apurinic endonuc 28.5 1.3E+02 0.0029 27.7 5.5 38 67-104 13-60 (274)
355 PF10686 DUF2493: Protein of u 28.4 62 0.0014 25.0 2.8 30 7-36 9-38 (71)
356 COG0821 gcpE 1-hydroxy-2-methy 28.3 4.2E+02 0.009 27.1 9.1 86 176-285 33-128 (361)
357 TIGR01304 IMP_DH_rel_2 IMP deh 28.1 1.5E+02 0.0032 29.7 6.0 41 202-244 143-193 (369)
358 PRK07534 methionine synthase I 28.1 53 0.0012 32.1 3.0 25 263-287 41-65 (336)
359 COG0284 PyrF Orotidine-5'-phos 28.1 2.2E+02 0.0047 26.9 6.8 104 181-289 54-165 (240)
360 COG0176 MipB Transaldolase [Ca 28.0 64 0.0014 30.8 3.4 89 11-104 72-170 (239)
361 PTZ00411 transaldolase-like pr 28.0 67 0.0015 31.8 3.6 22 63-84 166-187 (333)
362 TIGR00343 pyridoxal 5'-phospha 27.9 1.7E+02 0.0038 28.7 6.3 54 211-284 27-93 (287)
363 cd00288 Pyruvate_Kinase Pyruva 27.9 4E+02 0.0087 27.7 9.3 91 175-298 221-331 (480)
364 cd08148 RuBisCO_large Ribulose 27.8 4.5E+02 0.0098 26.4 9.4 83 181-298 141-241 (366)
365 PRK07896 nicotinate-nucleotide 27.6 1.4E+02 0.0031 28.9 5.7 60 16-102 184-243 (289)
366 PRK12656 fructose-6-phosphate 27.4 2.1E+02 0.0047 26.7 6.6 56 211-288 123-190 (222)
367 cd03465 URO-D_like The URO-D _ 27.3 42 0.00091 31.1 2.0 68 18-88 111-191 (330)
368 PF13714 PEP_mutase: Phosphoen 27.2 92 0.002 29.1 4.2 40 60-99 150-190 (238)
369 PRK12309 transaldolase/EF-hand 27.0 72 0.0016 32.1 3.7 47 63-111 160-227 (391)
370 TIGR03849 arch_ComA phosphosul 27.0 87 0.0019 29.8 4.0 71 208-288 78-155 (237)
371 PRK14041 oxaloacetate decarbox 26.9 1.2E+02 0.0027 31.2 5.4 68 226-293 268-343 (467)
372 cd04740 DHOD_1B_like Dihydroor 26.9 3.7E+02 0.0079 24.9 8.1 45 226-290 219-263 (296)
373 PF14606 Lipase_GDSL_3: GDSL-l 26.8 48 0.001 30.1 2.2 65 226-290 80-145 (178)
374 PRK00278 trpC indole-3-glycero 26.8 5.3E+02 0.011 24.1 10.5 47 211-259 80-131 (260)
375 TIGR01235 pyruv_carbox pyruvat 26.5 9.3E+02 0.02 27.9 12.5 82 212-293 790-879 (1143)
376 COG5016 Pyruvate/oxaloacetate 26.5 1.3E+02 0.0029 31.4 5.5 60 11-88 120-179 (472)
377 PRK08444 hypothetical protein; 26.3 1.5E+02 0.0031 29.3 5.6 88 17-111 114-210 (353)
378 KOG0067|consensus 26.2 16 0.00035 37.4 -0.9 140 66-258 161-305 (435)
379 PRK02412 aroD 3-dehydroquinate 26.2 4.2E+02 0.0091 24.6 8.3 23 266-288 121-143 (253)
380 COG3010 NanE Putative N-acetyl 26.2 1.4E+02 0.0031 28.5 5.2 55 67-122 87-142 (229)
381 cd00953 KDG_aldolase KDG (2-ke 26.0 1.6E+02 0.0034 27.6 5.6 34 211-247 88-129 (279)
382 PLN02623 pyruvate kinase 26.0 2.7E+02 0.0059 29.8 7.8 14 211-224 338-351 (581)
383 PRK09432 metF 5,10-methylenete 25.9 6E+02 0.013 24.4 12.3 78 211-288 173-276 (296)
384 PLN02765 pyruvate kinase 25.8 8.2E+02 0.018 26.0 12.8 118 74-287 216-346 (526)
385 PRK07896 nicotinate-nucleotide 25.8 2.8E+02 0.0061 27.0 7.3 65 200-287 206-274 (289)
386 TIGR02841 spore_YyaC putative 25.6 96 0.0021 27.6 3.8 31 18-48 49-80 (140)
387 PRK05567 inosine 5'-monophosph 25.6 2.6E+02 0.0056 28.5 7.4 59 211-288 287-361 (486)
388 cd08213 RuBisCO_large_III Ribu 25.5 4.8E+02 0.01 26.7 9.2 83 181-298 145-245 (412)
389 cd08207 RLP_NonPhot Ribulose b 25.3 5.1E+02 0.011 26.4 9.3 83 181-298 157-257 (406)
390 PRK09140 2-dehydro-3-deoxy-6-p 25.2 5.2E+02 0.011 23.4 8.7 67 211-297 32-101 (206)
391 TIGR00730 conserved hypothetic 25.1 4.8E+02 0.01 23.3 8.2 54 213-266 95-157 (178)
392 COG0157 NadC Nicotinate-nucleo 24.8 1.3E+02 0.0028 29.5 4.8 50 216-285 159-213 (280)
393 PRK10161 transcriptional regul 24.8 3.1E+02 0.0068 23.0 6.7 49 213-261 45-98 (229)
394 PRK10550 tRNA-dihydrouridine s 24.8 4E+02 0.0088 25.7 8.2 72 174-286 143-223 (312)
395 cd02932 OYE_YqiM_FMN Old yello 24.7 1.8E+02 0.004 27.7 5.8 67 5-85 194-261 (336)
396 CHL00148 orf27 Ycf27; Reviewed 24.6 4.2E+02 0.0091 22.2 8.4 49 212-261 48-99 (240)
397 TIGR03884 sel_bind_Methan sele 24.4 1E+02 0.0023 24.8 3.4 22 264-285 26-47 (74)
398 PRK08072 nicotinate-nucleotide 24.3 3.8E+02 0.0082 25.8 7.8 68 198-287 193-260 (277)
399 TIGR00737 nifR3_yhdG putative 24.0 3.4E+02 0.0074 25.7 7.5 60 211-289 157-224 (319)
400 TIGR00423 radical SAM domain p 24.0 3.7E+02 0.0081 25.3 7.7 51 226-284 71-121 (309)
401 PRK10200 putative racemase; Pr 23.8 1.5E+02 0.0034 27.0 5.0 67 61-128 58-141 (230)
402 PRK12331 oxaloacetate decarbox 23.8 2E+02 0.0043 29.5 6.2 55 239-293 291-347 (448)
403 PF04551 GcpE: GcpE protein; 23.8 68 0.0015 32.4 2.8 181 64-288 30-272 (359)
404 PRK15394 4-deoxy-4-formamido-L 23.7 64 0.0014 31.1 2.6 88 41-146 101-196 (296)
405 PRK05437 isopentenyl pyrophosp 23.7 5.7E+02 0.012 25.0 9.1 69 202-289 198-292 (352)
406 cd02801 DUS_like_FMN Dihydrour 23.6 1.9E+02 0.0042 25.3 5.4 62 4-85 97-158 (231)
407 cd06844 STAS Sulphate Transpor 23.6 1.6E+02 0.0035 22.7 4.4 34 266-299 57-90 (100)
408 cd08208 RLP_Photo Ribulose bis 23.6 5.6E+02 0.012 26.4 9.3 83 181-298 174-274 (424)
409 PRK00694 4-hydroxy-3-methylbut 23.5 78 0.0017 34.0 3.4 47 64-112 44-93 (606)
410 TIGR02709 branched_ptb branche 23.4 4.1E+02 0.0089 25.7 7.9 87 58-193 47-137 (271)
411 cd07408 MPP_SA0022_N Staphyloc 23.3 87 0.0019 28.5 3.3 27 262-288 152-179 (257)
412 TIGR03572 WbuZ glycosyl amidat 23.1 2.7E+02 0.0059 24.8 6.3 61 211-290 163-230 (232)
413 PF07293 DUF1450: Protein of u 23.1 1.5E+02 0.0033 23.7 4.2 52 18-76 16-73 (78)
414 PRK15424 propionate catabolism 23.0 2E+02 0.0044 30.1 6.2 69 217-286 86-161 (538)
415 cd07412 MPP_YhcR_N Bacillus su 23.0 95 0.0021 29.0 3.5 27 262-288 173-199 (288)
416 PRK10955 DNA-binding transcrip 23.0 3.7E+02 0.0079 22.4 6.7 48 213-261 43-93 (232)
417 cd07406 MPP_CG11883_N Drosophi 22.9 95 0.0021 28.4 3.5 27 262-288 153-179 (257)
418 COG0269 SgbH 3-hexulose-6-phos 22.7 3.5E+02 0.0076 25.6 7.1 61 211-290 25-90 (217)
419 PRK14040 oxaloacetate decarbox 22.7 9.5E+02 0.021 25.6 12.5 68 226-293 270-345 (593)
420 PF06866 DUF1256: Protein of u 22.4 1.1E+02 0.0025 27.6 3.8 31 18-48 73-104 (163)
421 PLN02925 4-hydroxy-3-methylbut 22.4 85 0.0018 34.5 3.4 161 63-260 108-322 (733)
422 PRK15115 response regulator Gl 22.4 2.8E+02 0.006 26.9 6.7 49 213-261 48-99 (444)
423 COG0274 DeoC Deoxyribose-phosp 22.4 3.7E+02 0.008 25.7 7.2 65 211-288 87-161 (228)
424 TIGR03326 rubisco_III ribulose 22.3 6.3E+02 0.014 25.8 9.3 83 181-298 158-258 (412)
425 COG1038 PycA Pyruvate carboxyl 22.1 2.3E+02 0.005 32.3 6.6 67 181-284 692-766 (1149)
426 cd07410 MPP_CpdB_N Escherichia 21.9 1E+02 0.0023 28.1 3.5 27 262-288 165-191 (277)
427 PRK09016 quinolinate phosphori 21.9 2.3E+02 0.005 27.7 6.0 55 18-99 195-249 (296)
428 cd04731 HisF The cyclase subun 21.8 4.3E+02 0.0092 23.7 7.3 34 211-245 159-199 (243)
429 PTZ00372 endonuclease 4-like p 21.8 4.1E+02 0.0088 27.2 7.9 36 69-104 145-190 (413)
430 PRK06252 methylcobalamin:coenz 21.8 59 0.0013 30.6 1.9 69 17-88 122-203 (339)
431 PRK05337 beta-hexosaminidase; 21.7 4.2E+02 0.0092 25.9 7.8 19 70-88 106-125 (337)
432 cd04735 OYE_like_4_FMN Old yel 21.6 1.3E+02 0.0028 29.2 4.2 70 4-87 183-257 (353)
433 PRK05286 dihydroorotate dehydr 21.6 2.8E+02 0.0061 26.9 6.5 49 226-288 194-246 (344)
434 TIGR02855 spore_yabG sporulati 21.5 79 0.0017 31.0 2.7 28 19-56 143-170 (283)
435 PRK00366 ispG 4-hydroxy-3-meth 21.4 8.8E+02 0.019 24.8 10.2 73 211-285 52-135 (360)
436 cd00439 Transaldolase Transald 21.4 96 0.0021 29.1 3.2 67 11-84 96-166 (252)
437 PRK07315 fructose-bisphosphate 21.3 1.5E+02 0.0034 28.4 4.6 51 211-261 163-225 (293)
438 PRK08255 salicylyl-CoA 5-hydro 21.3 1.9E+02 0.0042 31.0 5.8 69 4-86 590-659 (765)
439 COG1794 RacX Aspartate racemas 21.2 2.8E+02 0.0061 26.6 6.2 57 227-286 23-81 (230)
440 cd07577 Ph0642_like Pyrococcus 21.2 1.1E+02 0.0023 27.4 3.4 70 13-85 13-82 (259)
441 KOG2804|consensus 21.2 85 0.0018 31.5 2.9 27 19-45 80-106 (348)
442 PF01053 Cys_Met_Meta_PP: Cys/ 21.2 1.3E+02 0.0028 29.9 4.2 39 182-220 159-198 (386)
443 cd00717 URO-D Uroporphyrinogen 21.1 53 0.0012 31.0 1.5 67 18-87 114-199 (335)
444 PRK02048 4-hydroxy-3-methylbut 21.1 96 0.0021 33.4 3.4 160 64-260 40-253 (611)
445 PF13653 GDPD_2: Glycerophosph 21.1 97 0.0021 20.7 2.3 16 273-288 13-28 (30)
446 PF05582 Peptidase_U57: YabG p 21.0 82 0.0018 31.0 2.7 26 20-55 145-170 (287)
447 COG1879 RbsB ABC-type sugar tr 21.0 2.6E+02 0.0055 25.6 5.8 35 211-247 88-124 (322)
448 COG0329 DapA Dihydrodipicolina 20.9 2.6E+02 0.0057 26.7 6.1 41 211-252 96-143 (299)
449 PF00218 IGPS: Indole-3-glycer 20.9 3.3E+02 0.0073 25.9 6.7 188 24-288 40-239 (254)
450 PF01136 Peptidase_U32: Peptid 20.8 5.1E+02 0.011 22.9 7.5 60 211-291 12-71 (233)
451 PRK00286 xseA exodeoxyribonucl 20.7 6.3E+02 0.014 25.1 8.8 28 25-52 19-46 (438)
452 PF01076 Mob_Pre: Plasmid reco 20.6 1.5E+02 0.0032 26.5 4.1 37 17-53 103-140 (196)
453 PF00016 RuBisCO_large: Ribulo 20.6 4.3E+02 0.0093 26.0 7.5 75 180-288 27-116 (309)
454 cd07405 MPP_UshA_N Escherichia 20.5 1.1E+02 0.0025 28.5 3.5 27 262-288 155-181 (285)
455 TIGR00237 xseA exodeoxyribonuc 20.5 6.1E+02 0.013 25.6 8.8 28 25-52 13-40 (432)
456 cd02930 DCR_FMN 2,4-dienoyl-Co 20.3 2.2E+02 0.0047 27.5 5.4 70 4-87 176-246 (353)
457 PF01729 QRPTase_C: Quinolinat 20.2 2E+02 0.0043 25.5 4.8 60 18-104 66-126 (169)
458 COG0151 PurD Phosphoribosylami 20.2 5.2E+02 0.011 26.9 8.3 48 211-259 60-135 (428)
459 COG0407 HemE Uroporphyrinogen- 20.1 2E+02 0.0043 28.8 5.3 40 208-247 196-250 (352)
460 cd08206 RuBisCO_large_I_II_III 20.1 7.5E+02 0.016 25.3 9.4 84 181-298 146-247 (414)
No 1
>cd04824 eu_ALAD_PBGS_cysteine_rich Porphobilinogen synthase (PBGS), which is also called delta-aminolevulinic acid dehydratase (ALAD), catalyzes the condensation of two 5-aminolevulinic acid (ALA) molecules to form the pyrrole porphobilinogen (PBG), which is the second step in the biosynthesis of tetrapyrroles, such as heme, vitamin B12 and chlorophyll. This reaction involves the formation of a Schiff base link between the substrate and the enzyme. PBGSs are metalloenzymes, some of which have a second, allosteric metal binding site, beside the metal ion binding site in their active site. Although PBGS is a family of homologous enzymes, its metal ion utilization at catalytic site varies between zinc and magnesium and/or potassium. PBGS can be classified into two groups based on differences in their active site metal binding site. The eukaryotic PBGSs represented by this model, which contain a cysteine-rich zinc binding motif (DXCXCX(Y/F)X3G(H/Q)CG), require zinc for their activity, they
Probab=100.00 E-value=9.4e-106 Score=756.03 Aligned_cols=243 Identities=60% Similarity=1.063 Sum_probs=239.1
Q ss_pred CCCCcc-cccCCCCCChHHHHHHHHHHhCCCcEEEeeecCCCCCCCCcceeeCCCCceecHHhHHHHHHHHHHHHHcCCC
Q psy15126 2 DLRDET-ASFADTPDNPLFQVIPMIRKQFPSLTIACDVCLCGYTSHGHCAIFNEDGSIHYEKTLKRLADISKAFSDAGAH 80 (300)
Q Consensus 2 ~~kd~~-~s~a~~~~~~~~~~i~~ik~~~p~l~i~~Dvclc~yt~hGHcgi~~~~g~i~nd~Tl~~l~~~A~~~A~aGad 80 (300)
+.||+. ||+||+|||++||+||.||++||+++|||||||||||+||||||++++|.|+||+||++|++||+++|+||||
T Consensus 77 ~~Kd~~~gs~a~~~~g~v~~air~iK~~~pdl~vi~Dvclc~YT~hGHcGil~~~g~vdND~Tl~~L~k~Avs~A~AGAD 156 (320)
T cd04824 77 PGKDDRSGSAADDEDGPVIQAIKLIREEFPELLIACDVCLCEYTSHGHCGILYEDGTINNEASVKRLAEVALAYAKAGAH 156 (320)
T ss_pred ccCCcCccccccCCCChHHHHHHHHHHhCCCcEEEEeeeccCCCCCCcceeECCCCcCcCHHHHHHHHHHHHHHHHhCCC
Confidence 359999 9999999999999999999999999999999999999999999998789999999999999999999999999
Q ss_pred ccccCCCCcchHHHHHHHHhhCCCCCCcccccchhhhhcccchhhhhhhcCCCCCCCcceeeCCCCCCceEEEEeecccC
Q psy15126 81 IVAPSDMMDNRIHAIKQSLFTSRQSSTTGLLSYSAKFCSAFYGPFREAAGSAPTFGDRSCYQLPCGSKGLAIRAAVCLCG 160 (300)
Q Consensus 81 ~vAPSdmMDgrv~air~aLd~~g~~~~v~ImsysaK~aS~~YGPfRda~gS~~~~gdr~~yQ~~~~~~~~ai~~dvclc~ 160 (300)
+|||||||||||++||++||.+||+.+|+|||||+||||+||||||||++|+|+||||++|||||+|.++|+|+.
T Consensus 157 iVAPSdMMDGrV~aIR~aLD~~G~~~~v~ImSYsaKyaS~fYGPFRdAa~Sap~~gDRksYQmdp~n~~eAlre~----- 231 (320)
T cd04824 157 IVAPSDMMDGRVRAIKQALIQAGLGNKVSVMSYSAKFASCLYGPFRDAACSAPSFGDRRCYQLPPGARGLALRAV----- 231 (320)
T ss_pred EEecccccccHHHHHHHHHHHCCCccCCeeeehHHHhhhhccchHHHHhcCCCCCCCccccCCCCcCHHHHHHHH-----
Confidence 999999999999999999999999779999999999999999999999999999999999999999999999997
Q ss_pred CCCCCccccccCCCcccchHhHHHHHHHHHhhhcccccCCCCCccccchhhhcCCceeeccCcchHHHHHHHHHhhCCCC
Q psy15126 161 YTSHGHCAIFNEDGSIHYEKTLKRLADISKAFSDAVYVPNHNTDRFQARDVSQGADFLMVKPALPYLDIISEVKSRHPAY 240 (300)
Q Consensus 161 yt~hGHcgi~~~~g~i~nd~tl~~l~~~a~~~a~~~~~~~~n~~~~~~~Da~~GADivmVkPsmm~ld~Ir~~~d~~~~v 240 (300)
++|++||||||||||+++|||+||++|++||++
T Consensus 232 -----------------------------------------------~~D~~EGAD~lMVKPal~YLDIi~~~k~~~~~~ 264 (320)
T cd04824 232 -----------------------------------------------ERDVSEGADMIMVKPGTPYLDIVREAKDKHPDL 264 (320)
T ss_pred -----------------------------------------------HhhHHhCCCEEEEcCCchHHHHHHHHHHhccCC
Confidence 899999999999999999999999999999999
Q ss_pred CEEeEecccccHHHHHHHhCCCCCHHHHHHHHHHHHHHcCCCEEEecchHHHHHHH
Q psy15126 241 PLFVYQVSGEYAMLAFAAQAGALDLKRALMETLTCLRRGGADVIISYYTPRVLEWL 296 (300)
Q Consensus 241 pi~aY~vSgeY~~~r~Aa~~~~~n~~eal~E~~~~~~r~GAD~Ii~y~A~~~ld~l 296 (300)
||.+|||||||+|+|+|+++||+|++++++|+|++|||+|||+||||||+++++||
T Consensus 265 PvaaYqVSGEYaMikaAa~~G~iDe~~~~~Esl~~ikRAGAd~IiTYfA~~~a~wL 320 (320)
T cd04824 265 PLAVYHVSGEYAMLHAAAEAGAFDLKRAVLEAMTGFRRAGADIIITYFTPELLDWL 320 (320)
T ss_pred CEEEEEccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhcCCCEEEeecHHHHHhhC
Confidence 99999999999999999999999999999999999999999999999999999997
No 2
>cd00384 ALAD_PBGS Porphobilinogen synthase (PBGS), which is also called delta-aminolevulinic acid dehydratase (ALAD), catalyzes the condensation of two 5-aminolevulinic acid (ALA) molecules to form the pyrrole porphobilinogen (PBG), which is the second step in the biosynthesis of tetrapyrroles, such as heme, vitamin B12 and chlorophyll. This reaction involves the formation of a Schiff base link between the substrate and the enzyme. PBGSs are metalloenzymes, some of which have a second, allosteric metal binding site, beside the metal ion binding site in their active site. Although PBGS is a family of homologous enzymes, its metal ion utilization at catalytic site varies between zinc and magnesium and/or potassium. PBGS can be classified into two groups based on differences in their active site metal binding site. They either contain a cysteine-rich zinc binding site (consensus DXCXCX(Y/F)X3G(H/Q)CG) or an aspartate-rich magnesium binding site (consensus DXALDX(Y/F)X3G(H/Q)DG). The cyste
Probab=100.00 E-value=3.3e-105 Score=751.24 Aligned_cols=240 Identities=48% Similarity=0.827 Sum_probs=236.4
Q ss_pred CCCCcccccCCCCCChHHHHHHHHHHhCCCcEEEeeecCCCCCCCCcceeeCCCCceecHHhHHHHHHHHHHHHHcCCCc
Q psy15126 2 DLRDETASFADTPDNPLFQVIPMIRKQFPSLTIACDVCLCGYTSHGHCAIFNEDGSIHYEKTLKRLADISKAFSDAGAHI 81 (300)
Q Consensus 2 ~~kd~~~s~a~~~~~~~~~~i~~ik~~~p~l~i~~Dvclc~yt~hGHcgi~~~~g~i~nd~Tl~~l~~~A~~~A~aGad~ 81 (300)
+.||+.||+||+|||++||+||.||++||+|+|||||||||||+||||||++ +|.|+||+||++|++||++||+||||+
T Consensus 75 ~~Kd~~gs~A~~~~g~v~~air~iK~~~p~l~vi~DvcLc~YT~hGHcGil~-~~~idND~Tl~~L~k~Als~A~AGADi 153 (314)
T cd00384 75 EHKDEIGSEAYDPDGIVQRAIRAIKEAVPELVVITDVCLCEYTDHGHCGILK-DDYVDNDATLELLAKIAVSHAEAGADI 153 (314)
T ss_pred CCCCCCcccccCCCChHHHHHHHHHHhCCCcEEEEeeeccCCCCCCcceecc-CCcCccHHHHHHHHHHHHHHHHcCCCe
Confidence 4699999999999999999999999999999999999999999999999996 579999999999999999999999999
Q ss_pred cccCCCCcchHHHHHHHHhhCCCCCCcccccchhhhhcccchhhhhhhcCCCCCCCcceeeCCCCCCceEEEEeecccCC
Q psy15126 82 VAPSDMMDNRIHAIKQSLFTSRQSSTTGLLSYSAKFCSAFYGPFREAAGSAPTFGDRSCYQLPCGSKGLAIRAAVCLCGY 161 (300)
Q Consensus 82 vAPSdmMDgrv~air~aLd~~g~~~~v~ImsysaK~aS~~YGPfRda~gS~~~~gdr~~yQ~~~~~~~~ai~~dvclc~y 161 (300)
|||||||||||++||++||++|| .+|+|||||+||||+||||||||++|+|+||||++|||||+|.++|+|+.
T Consensus 154 VAPSdMMDGrV~aIR~aLd~~g~-~~v~ImsYsaKyaSafYGPFRdAa~Sap~~gDRktYQmdpan~~eAlre~------ 226 (314)
T cd00384 154 VAPSDMMDGRVAAIREALDEAGF-SDVPIMSYSAKYASAFYGPFRDAADSAPSFGDRKTYQMDPANRREALREV------ 226 (314)
T ss_pred eecccccccHHHHHHHHHHHCCC-CCCceeecHHHhhhhccchHHHHhhcCCCCCCccccCCCCCCHHHHHHHH------
Confidence 99999999999999999999999 89999999999999999999999999999999999999999999999997
Q ss_pred CCCCccccccCCCcccchHhHHHHHHHHHhhhcccccCCCCCccccchhhhcCCceeeccCcchHHHHHHHHHhhCCCCC
Q psy15126 162 TSHGHCAIFNEDGSIHYEKTLKRLADISKAFSDAVYVPNHNTDRFQARDVSQGADFLMVKPALPYLDIISEVKSRHPAYP 241 (300)
Q Consensus 162 t~hGHcgi~~~~g~i~nd~tl~~l~~~a~~~a~~~~~~~~n~~~~~~~Da~~GADivmVkPsmm~ld~Ir~~~d~~~~vp 241 (300)
++|++||||||||||+|+|||+||++|++| ++|
T Consensus 227 ----------------------------------------------~~D~~EGAD~lMVKPal~YLDIi~~~k~~~-~~P 259 (314)
T cd00384 227 ----------------------------------------------ELDIEEGADILMVKPALAYLDIIRDVRERF-DLP 259 (314)
T ss_pred ----------------------------------------------HhhHHhCCCEEEEcCCchHHHHHHHHHHhc-CCC
Confidence 899999999999999999999999999998 899
Q ss_pred EEeEecccccHHHHHHHhCCCCCHHHHHHHHHHHHHHcCCCEEEecchHHHHHHH
Q psy15126 242 LFVYQVSGEYAMLAFAAQAGALDLKRALMETLTCLRRGGADVIISYYTPRVLEWL 296 (300)
Q Consensus 242 i~aY~vSgeY~~~r~Aa~~~~~n~~eal~E~~~~~~r~GAD~Ii~y~A~~~ld~l 296 (300)
+++|||||||+|+|+|+++||+|++++++|+|+++||+|||+||||||+++++||
T Consensus 260 vaaYqVSGEYaMikaAa~~G~id~~~~~~Esl~~~kRAGAd~IiTYfA~~~a~~l 314 (314)
T cd00384 260 VAAYNVSGEYAMIKAAAKNGWIDEERVVLESLTSIKRAGADLIITYFAKDAARWL 314 (314)
T ss_pred EEEEEccHHHHHHHHHHHcCCccHHHHHHHHHHHHHhcCCCEEEeecHHHHHhhC
Confidence 9999999999999999999999999999999999999999999999999999997
No 3
>cd04823 ALAD_PBGS_aspartate_rich Porphobilinogen synthase (PBGS), which is also called delta-aminolevulinic acid dehydratase (ALAD), catalyzes the condensation of two 5-aminolevulinic acid (ALA) molecules to form the pyrrole porphobilinogen (PBG), which is the second step in the biosynthesis of tetrapyrroles, such as heme, vitamin B12 and chlorophyll. This reaction involves the formation of a Schiff base link between the substrate and the enzyme. PBGSs are metalloenzymes, some of which have a second, allosteric metal binding site, beside the metal ion binding site in their active site. Although PBGS is a family of homologous enzymes, its metal ion utilization at catalytic site varies between zinc and magnesium and/or potassium. PBGS can be classified into two groups based on differences in their active site metal binding site. All of PBGS_aspartate_rich contain an aspartate rich metal binding site with the general sequence DXALDX(Y/F)X3G(H/Q)DG. They also contain an allosteric magnesiu
Probab=100.00 E-value=1.2e-104 Score=748.87 Aligned_cols=241 Identities=48% Similarity=0.772 Sum_probs=236.3
Q ss_pred CCCCcccccCCCCCChHHHHHHHHHHhCCCcEEEeeecCCCCCCCCcceeeCCCCceecHHhHHHHHHHHHHHHHcCCCc
Q psy15126 2 DLRDETASFADTPDNPLFQVIPMIRKQFPSLTIACDVCLCGYTSHGHCAIFNEDGSIHYEKTLKRLADISKAFSDAGAHI 81 (300)
Q Consensus 2 ~~kd~~~s~a~~~~~~~~~~i~~ik~~~p~l~i~~Dvclc~yt~hGHcgi~~~~g~i~nd~Tl~~l~~~A~~~A~aGad~ 81 (300)
++||+.||+|++|||++||+|+.||++||+++|||||||||||+||||||+++ |.|+||+|+++|+++|+++|+||||+
T Consensus 80 ~~KD~~gs~A~~~~g~v~~air~iK~~~p~l~vi~DVclc~YT~hGHcGil~~-~~idND~Tl~~L~~~Avs~A~AGADi 158 (320)
T cd04823 80 ELKSEDGSEAYNPDNLVCRAIRAIKEAFPELGIITDVALDPYTSHGHDGIVRD-GGILNDETVEVLCKQALVQAEAGADI 158 (320)
T ss_pred ccCCcccccccCCCChHHHHHHHHHHhCCCcEEEEeeeccCCCCCCcceeccC-CcCcCHHHHHHHHHHHHHHHHhCCCE
Confidence 36999999999999999999999999999999999999999999999999974 66999999999999999999999999
Q ss_pred cccCCCCcchHHHHHHHHhhCCCCCCcccccchhhhhcccchhhhhhhcCCCCCCCcceeeCCCCCCceEEEEeecccCC
Q psy15126 82 VAPSDMMDNRIHAIKQSLFTSRQSSTTGLLSYSAKFCSAFYGPFREAAGSAPTFGDRSCYQLPCGSKGLAIRAAVCLCGY 161 (300)
Q Consensus 82 vAPSdmMDgrv~air~aLd~~g~~~~v~ImsysaK~aS~~YGPfRda~gS~~~~gdr~~yQ~~~~~~~~ai~~dvclc~y 161 (300)
|||||||||||++||++||++|| .+|+|||||+||||+||||||||++|+|+||||++|||||+|.++|+++.
T Consensus 159 VAPSdMMDGrV~aIR~aLd~~g~-~~v~ImSYsaKyaS~fYGPFRdAa~Sap~fgDRksYQmdp~n~~eAlre~------ 231 (320)
T cd04823 159 VAPSDMMDGRIGAIREALDAEGF-TNVSILSYAAKYASAFYGPFRDALGSAPRKGDKKTYQMDPANSREALREV------ 231 (320)
T ss_pred EEcccchhhHHHHHHHHHHHCCC-CCCceeechHHhhhhccchhHHHhcCCCCCCCccccCCCCCCHHHHHHHH------
Confidence 99999999999999999999999 89999999999999999999999999999999999999999999999997
Q ss_pred CCCCccccccCCCcccchHhHHHHHHHHHhhhcccccCCCCCccccchhhhcCCceeeccCcchHHHHHHHHHhhCCCCC
Q psy15126 162 TSHGHCAIFNEDGSIHYEKTLKRLADISKAFSDAVYVPNHNTDRFQARDVSQGADFLMVKPALPYLDIISEVKSRHPAYP 241 (300)
Q Consensus 162 t~hGHcgi~~~~g~i~nd~tl~~l~~~a~~~a~~~~~~~~n~~~~~~~Da~~GADivmVkPsmm~ld~Ir~~~d~~~~vp 241 (300)
.+|++||||||||||+|+|||+||++|++| ++|
T Consensus 232 ----------------------------------------------~~Di~EGAD~lMVKPal~YLDIi~~~k~~~-~lP 264 (320)
T cd04823 232 ----------------------------------------------ALDIAEGADMVMVKPGMPYLDIIRRVKDEF-GVP 264 (320)
T ss_pred ----------------------------------------------HhhHHhCCCEEEEcCCchHHHHHHHHHHhc-CCC
Confidence 899999999999999999999999999998 899
Q ss_pred EEeEecccccHHHHHHHhCCCCCHHHHHHHHHHHHHHcCCCEEEecchHHHHHHHh
Q psy15126 242 LFVYQVSGEYAMLAFAAQAGALDLKRALMETLTCLRRGGADVIISYYTPRVLEWLR 297 (300)
Q Consensus 242 i~aY~vSgeY~~~r~Aa~~~~~n~~eal~E~~~~~~r~GAD~Ii~y~A~~~ld~l~ 297 (300)
|.+|||||||+|+|+|+++||+|++++++|+++++||+|||+||||||+++++||+
T Consensus 265 vaaYqVSGEYaMikaAa~~G~~d~~~~~~Esl~~ikRAGAd~IiTY~A~~~a~wl~ 320 (320)
T cd04823 265 TFAYQVSGEYAMLKAAAQNGWLDEDKVMLESLLAFKRAGADGILTYFAKEAAEWLR 320 (320)
T ss_pred EEEEEccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhcCCCEEeeccHHHHHHhhC
Confidence 99999999999999999999999999999999999999999999999999999984
No 4
>COG0113 HemB Delta-aminolevulinic acid dehydratase [Coenzyme metabolism]
Probab=100.00 E-value=1.2e-104 Score=746.98 Aligned_cols=244 Identities=49% Similarity=0.843 Sum_probs=239.5
Q ss_pred CCCCcccccCCCCCChHHHHHHHHHHhCCCcEEEeeecCCCCCCCCcceeeCCCCceecHHhHHHHHHHHHHHHHcCCCc
Q psy15126 2 DLRDETASFADTPDNPLFQVIPMIRKQFPSLTIACDVCLCGYTSHGHCAIFNEDGSIHYEKTLKRLADISKAFSDAGAHI 81 (300)
Q Consensus 2 ~~kd~~~s~a~~~~~~~~~~i~~ik~~~p~l~i~~Dvclc~yt~hGHcgi~~~~g~i~nd~Tl~~l~~~A~~~A~aGad~ 81 (300)
+.||++||+|++|+|++||++|.||+.||+++|||||||||||+||||||++++|.|+||+||+.|+++|++||+||||+
T Consensus 87 ~~Kd~~gs~A~~~~givqravr~ik~~~p~l~iitDvcLceyT~HGHcGil~~~~~V~ND~Tle~l~k~Avs~AeAGAdi 166 (330)
T COG0113 87 SKKDETGSEAYDPDGIVQRAVRAIKEAFPELVVITDVCLCEYTDHGHCGILDDGGYVDNDETLEILAKQAVSQAEAGADI 166 (330)
T ss_pred cccCcccccccCCCChHHHHHHHHHHhCCCeEEEeeecccCCcCCCccccccCCCeecchHHHHHHHHHHHHHHHcCCCe
Confidence 46999999999999999999999999999999999999999999999999987779999999999999999999999999
Q ss_pred cccCCCCcchHHHHHHHHhhCCCCCCcccccchhhhhcccchhhhhhhcCCCCCCCcceeeCCCCCCceEEEEeecccCC
Q psy15126 82 VAPSDMMDNRIHAIKQSLFTSRQSSTTGLLSYSAKFCSAFYGPFREAAGSAPTFGDRSCYQLPCGSKGLAIRAAVCLCGY 161 (300)
Q Consensus 82 vAPSdmMDgrv~air~aLd~~g~~~~v~ImsysaK~aS~~YGPfRda~gS~~~~gdr~~yQ~~~~~~~~ai~~dvclc~y 161 (300)
||||+||||||++||++||.+|| .+|+|||||+||||+||||||||++|+|.||||++|||||+|.++|+|+.
T Consensus 167 vAPSdMMDGrV~aIR~aLd~ag~-~~v~IMsYsaKyASafYGPFRdAa~Sap~~gdrktYQmDpaN~~EAlrE~------ 239 (330)
T COG0113 167 VAPSDMMDGRVGAIREALDEAGF-IDVPIMSYSAKYASAFYGPFRDAAGSAPKFGDRKTYQMDPANRREALREI------ 239 (330)
T ss_pred ecccccccchHHHHHHHHHHcCC-CcceeeehhHHHhhhccccHHHHhhcccccCCcceeccCCcCHHHHHHHH------
Confidence 99999999999999999999999 89999999999999999999999999999999999999999999999997
Q ss_pred CCCCccccccCCCcccchHhHHHHHHHHHhhhcccccCCCCCccccchhhhcCCceeeccCcchHHHHHHHHHhhCCCCC
Q psy15126 162 TSHGHCAIFNEDGSIHYEKTLKRLADISKAFSDAVYVPNHNTDRFQARDVSQGADFLMVKPALPYLDIISEVKSRHPAYP 241 (300)
Q Consensus 162 t~hGHcgi~~~~g~i~nd~tl~~l~~~a~~~a~~~~~~~~n~~~~~~~Da~~GADivmVkPsmm~ld~Ir~~~d~~~~vp 241 (300)
++|++||||||||||+|+|||+||+++++| ++|
T Consensus 240 ----------------------------------------------~lD~~EGAD~lMVKPal~YLDIi~~vk~~~-~lP 272 (330)
T COG0113 240 ----------------------------------------------ELDIEEGADILMVKPALPYLDIIRRVKEEF-NLP 272 (330)
T ss_pred ----------------------------------------------HhhHhcCCcEEEEcCCchHHHHHHHHHHhc-CCC
Confidence 899999999999999999999999999998 699
Q ss_pred EEeEecccccHHHHHHHhCCCCCHHHHHHHHHHHHHHcCCCEEEecchHHHHHHHhhC
Q psy15126 242 LFVYQVSGEYAMLAFAAQAGALDLKRALMETLTCLRRGGADVIISYYTPRVLEWLRED 299 (300)
Q Consensus 242 i~aY~vSgeY~~~r~Aa~~~~~n~~eal~E~~~~~~r~GAD~Ii~y~A~~~ld~l~~~ 299 (300)
+++|||||||+|+|+|+++||+|++++++|+|+++||+|||+||||||+++++||++.
T Consensus 273 ~~AYqVSGEYaMikAAa~nGwide~~~vlEsL~~~kRAGAd~IiTYfA~e~a~~L~~~ 330 (330)
T COG0113 273 VAAYQVSGEYAMIKAAAQNGWIDEEKVVLESLTSIKRAGADLIITYFAKEVAEWLKEG 330 (330)
T ss_pred eEEEecchHHHHHHHHHHcCCcchHHHHHHHHHHHHhcCCCEEEeecHHHHHHHhhcC
Confidence 9999999999999999999999999999999999999999999999999999999863
No 5
>PRK09283 delta-aminolevulinic acid dehydratase; Validated
Probab=100.00 E-value=1.6e-104 Score=749.26 Aligned_cols=241 Identities=49% Similarity=0.828 Sum_probs=237.3
Q ss_pred CCCCcccccCCCCCChHHHHHHHHHHhCCCcEEEeeecCCCCCCCCcceeeCCCCceecHHhHHHHHHHHHHHHHcCCCc
Q psy15126 2 DLRDETASFADTPDNPLFQVIPMIRKQFPSLTIACDVCLCGYTSHGHCAIFNEDGSIHYEKTLKRLADISKAFSDAGAHI 81 (300)
Q Consensus 2 ~~kd~~~s~a~~~~~~~~~~i~~ik~~~p~l~i~~Dvclc~yt~hGHcgi~~~~g~i~nd~Tl~~l~~~A~~~A~aGad~ 81 (300)
+.||+.||+||+|||+++||||.||++||+++|||||||||||+||||||+++ |.|+||+|+++|++||+++|+||||+
T Consensus 83 ~~Kd~~gs~A~~~~g~v~rair~iK~~~p~l~vi~DVcLc~YT~hGHcGil~~-g~idND~Tl~~L~~~Al~~A~AGaDi 161 (323)
T PRK09283 83 ELKDEDGSEAYNPDGLVQRAIRAIKKAFPELGVITDVCLDEYTSHGHCGILED-GYVDNDETLELLAKQALSQAEAGADI 161 (323)
T ss_pred CCCCcccccccCCCCHHHHHHHHHHHhCCCcEEEEeeeccCCCCCCceecccC-CcCcCHHHHHHHHHHHHHHHHhCCCE
Confidence 46999999999999999999999999999999999999999999999999975 99999999999999999999999999
Q ss_pred cccCCCCcchHHHHHHHHhhCCCCCCcccccchhhhhcccchhhhhhhcCCCCCCCcceeeCCCCCCceEEEEeecccCC
Q psy15126 82 VAPSDMMDNRIHAIKQSLFTSRQSSTTGLLSYSAKFCSAFYGPFREAAGSAPTFGDRSCYQLPCGSKGLAIRAAVCLCGY 161 (300)
Q Consensus 82 vAPSdmMDgrv~air~aLd~~g~~~~v~ImsysaK~aS~~YGPfRda~gS~~~~gdr~~yQ~~~~~~~~ai~~dvclc~y 161 (300)
|||||||||||++||++||.+|| .+|+|||||+||||+||||||||++|+|.||||++|||||+|.++|+++.
T Consensus 162 VAPSdMMDGrV~aIR~aLd~~g~-~~v~ImSYsaKyaS~fYGPFRdA~~Sap~~gDrktYQmdp~n~~eAlre~------ 234 (323)
T PRK09283 162 VAPSDMMDGRVGAIREALDEAGF-TDVPIMSYSAKYASAFYGPFRDAAGSAPQFGDRKTYQMDPANRREALREV------ 234 (323)
T ss_pred EEcccccccHHHHHHHHHHHCCC-CCCceeecHHHHHHhhhHHHHHHHhcCCCCCCccccCCCCCCHHHHHHHH------
Confidence 99999999999999999999999 89999999999999999999999999999999999999999999999997
Q ss_pred CCCCccccccCCCcccchHhHHHHHHHHHhhhcccccCCCCCccccchhhhcCCceeeccCcchHHHHHHHHHhhCCCCC
Q psy15126 162 TSHGHCAIFNEDGSIHYEKTLKRLADISKAFSDAVYVPNHNTDRFQARDVSQGADFLMVKPALPYLDIISEVKSRHPAYP 241 (300)
Q Consensus 162 t~hGHcgi~~~~g~i~nd~tl~~l~~~a~~~a~~~~~~~~n~~~~~~~Da~~GADivmVkPsmm~ld~Ir~~~d~~~~vp 241 (300)
++|++||||||||||+|+|||+||++|++| ++|
T Consensus 235 ----------------------------------------------~~D~~EGAD~lMVKPal~YLDIi~~~k~~~-~~P 267 (323)
T PRK09283 235 ----------------------------------------------ALDIEEGADMVMVKPALPYLDIIRRVKDEF-NLP 267 (323)
T ss_pred ----------------------------------------------HhhHHhCCCEEEEcCCchHHHHHHHHHhcC-CCC
Confidence 899999999999999999999999999998 799
Q ss_pred EEeEecccccHHHHHHHhCCCCCHHHHHHHHHHHHHHcCCCEEEecchHHHHHHHh
Q psy15126 242 LFVYQVSGEYAMLAFAAQAGALDLKRALMETLTCLRRGGADVIISYYTPRVLEWLR 297 (300)
Q Consensus 242 i~aY~vSgeY~~~r~Aa~~~~~n~~eal~E~~~~~~r~GAD~Ii~y~A~~~ld~l~ 297 (300)
|++|||||||+|+|+|+++||+|++++++|+++++||+|||+||||||+++++||+
T Consensus 268 vaaYqVSGEYaMikaAa~~G~~D~~~~~~Esl~~~kRAGAd~IiTYfA~~~a~~L~ 323 (323)
T PRK09283 268 VAAYQVSGEYAMIKAAAQNGWIDEERVVLESLLSIKRAGADGILTYFAKDAARWLR 323 (323)
T ss_pred EEEEEccHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCCEEEecCHHHHHHhhC
Confidence 99999999999999999999999999999999999999999999999999999985
No 6
>PF00490 ALAD: Delta-aminolevulinic acid dehydratase; InterPro: IPR001731 Tetrapyrroles are large macrocyclic compounds derived from a common biosynthetic pathway []. The end-product, uroporphyrinogen III, is used to synthesise a number of important molecules, including vitamin B12, haem, sirohaem, chlorophyll, coenzyme F430 and phytochromobilin []. The first stage in tetrapyrrole synthesis is the synthesis of 5-aminoaevulinic acid ALA via two possible routes: (1) condensation of succinyl CoA and glycine (C4 pathway) using ALA synthase (2.3.1.37 from EC), or (2) decarboxylation of glutamate (C5 pathway) via three different enzymes, glutamyl-tRNA synthetase (6.1.1.17 from EC) to charge a tRNA with glutamate, glutamyl-tRNA reductase (1.2.1.70 from EC) to reduce glutamyl-tRNA to glutamate-1-semialdehyde (GSA), and GSA aminotransferase (5.4.3.8 from EC) to catalyse a transamination reaction to produce ALA. The second stage is to convert ALA to uroporphyrinogen III, the first macrocyclic tetrapyrrolic structure in the pathway. This is achieved by the action of three enzymes in one common pathway: porphobilinogen (PBG) synthase (or ALA dehydratase, 4.2.1.24 from EC) to condense two ALA molecules to generate porphobilinogen; hydroxymethylbilane synthase (or PBG deaminase, 2.5.1.61 from EC) to polymerise four PBG molecules into preuroporphyrinogen (tetrapyrrole structure); and uroporphyrinogen III synthase (4.2.1.75 from EC) to link two pyrrole units together (rings A and D) to yield uroporphyrinogen III. Uroporphyrinogen III is the first branch point of the pathway. To synthesise cobalamin (vitamin B12), sirohaem, and coenzyme F430, uroporphyrinogen III needs to be converted into precorrin-2 by the action of uroporphyrinogen III methyltransferase (2.1.1.107 from EC). To synthesise haem and chlorophyll, uroporphyrinogen III needs to be decarboxylated into coproporphyrinogen III by the action of uroporphyrinogen III decarboxylase (4.1.1.37 from EC) []. This entry represents porphobilinogen (PBG) synthase (PBGS, or 5-aminoaevulinic acid dehydratase, or ALAD, 4.2.1.24 from EC), which functions during the second stage of tetrapyrrole biosynthesis. This enzyme catalyses a Knorr-type condensation reaction between two molecules of ALA to generate porphobilinogen, the pyrrolic building block used in later steps []. The structure of the enzyme is based on a TIM barrel topology made up of eight identical subunits, where each subunit binds to a metal ion that is essential for activity, usually zinc (in yeast, mammals and certain bacteria) or magnesium (in plants and other bacteria). A lysine has been implicated in the catalytic mechanism []. The lack of PBGS enzyme causes a rare porphyric disorder known as ALAD porphyria, which appears to involve conformational changes in the enzyme [.; GO: 0004655 porphobilinogen synthase activity, 0046872 metal ion binding, 0033014 tetrapyrrole biosynthetic process; PDB: 2C1H_A 1W1Z_A 1GZG_B 1W5O_B 1W5Q_B 2C18_A 1B4K_A 2C19_B 1W56_B 2C13_B ....
Probab=100.00 E-value=8e-105 Score=751.45 Aligned_cols=241 Identities=53% Similarity=0.881 Sum_probs=223.1
Q ss_pred CCCCcccccCCCCCChHHHHHHHHHHhCCCcEEEeeecCCCCCCCCcceee-CCCCceecHHhHHHHHHHHHHHHHcCCC
Q psy15126 2 DLRDETASFADTPDNPLFQVIPMIRKQFPSLTIACDVCLCGYTSHGHCAIF-NEDGSIHYEKTLKRLADISKAFSDAGAH 80 (300)
Q Consensus 2 ~~kd~~~s~a~~~~~~~~~~i~~ik~~~p~l~i~~Dvclc~yt~hGHcgi~-~~~g~i~nd~Tl~~l~~~A~~~A~aGad 80 (300)
+.||+.||+||+|||++||||+.||++||+++|||||||||||+||||||+ +++|.|+||+||++|++||++||+||||
T Consensus 83 ~~Kd~~gs~a~~~~g~v~~air~iK~~~pdl~vi~Dvclc~YT~hGHcGil~~~~g~idND~Tl~~Lak~Al~~A~AGAD 162 (324)
T PF00490_consen 83 SKKDEEGSEAYNPDGLVQRAIRAIKKAFPDLLVITDVCLCEYTSHGHCGILDDEDGEIDNDETLERLAKQALSHAEAGAD 162 (324)
T ss_dssp SC-BSS-GGGGSTTSHHHHHHHHHHHHSTTSEEEEEE-STTTBTSSSSSEB-CTTSSBEHHHHHHHHHHHHHHHHHHT-S
T ss_pred ccCCcchhcccCCCChHHHHHHHHHHhCCCcEEEEecccccccCCCceEEEECCCCeEecHHHHHHHHHHHHHHHHhCCC
Confidence 579999999999999999999999999999999999999999999999999 6899999999999999999999999999
Q ss_pred ccccCCCCcchHHHHHHHHhhCCCCCCcccccchhhhhcccchhhhhhhcCCCCCCCcceeeCCCCCCceEEEEeecccC
Q psy15126 81 IVAPSDMMDNRIHAIKQSLFTSRQSSTTGLLSYSAKFCSAFYGPFREAAGSAPTFGDRSCYQLPCGSKGLAIRAAVCLCG 160 (300)
Q Consensus 81 ~vAPSdmMDgrv~air~aLd~~g~~~~v~ImsysaK~aS~~YGPfRda~gS~~~~gdr~~yQ~~~~~~~~ai~~dvclc~ 160 (300)
+|||||||||||++||++||++|| .+|+|||||+||||+||||||||++|+|.||||++|||||+|.++|+++.
T Consensus 163 iVAPSdMMDGrV~aIR~aLd~~g~-~~v~ImSYsaKyaS~fYGPFRdAa~Sap~fgDrktYQmdp~N~~EAlre~----- 236 (324)
T PF00490_consen 163 IVAPSDMMDGRVGAIREALDEAGF-SDVPIMSYSAKYASAFYGPFRDAAGSAPKFGDRKTYQMDPANRREALREA----- 236 (324)
T ss_dssp EEEE-S--TTHHHHHHHHHHHTTC-TTSEEEEEEEEB-SSTGHHHHHHHT-HHSSSTSTTTSB-TT-HHHHHHHH-----
T ss_pred eeccccccCCHHHHHHHHHHhCCC-CCccEEechHHHhhhhhHhHHHHhcCCccccCcccccCCCccHHHHHHHh-----
Confidence 999999999999999999999999 89999999999999999999999999999999999999999999999997
Q ss_pred CCCCCccccccCCCcccchHhHHHHHHHHHhhhcccccCCCCCccccchhhhcCCceeeccCcchHHHHHHHHHhhCCCC
Q psy15126 161 YTSHGHCAIFNEDGSIHYEKTLKRLADISKAFSDAVYVPNHNTDRFQARDVSQGADFLMVKPALPYLDIISEVKSRHPAY 240 (300)
Q Consensus 161 yt~hGHcgi~~~~g~i~nd~tl~~l~~~a~~~a~~~~~~~~n~~~~~~~Da~~GADivmVkPsmm~ld~Ir~~~d~~~~v 240 (300)
.+|++||||||||||+|+|||+||++|++| ++
T Consensus 237 -----------------------------------------------~~D~~EGAD~lMVKPal~YLDIi~~~k~~~-~~ 268 (324)
T PF00490_consen 237 -----------------------------------------------ELDIEEGADILMVKPALPYLDIIRRVKERF-DL 268 (324)
T ss_dssp -----------------------------------------------HHHHHTT-SEEEEESSGGGHHHHHHHHHHC-TS
T ss_pred -----------------------------------------------hhhHhhCCCEEEeecchhHHHHHHHHHHhc-CC
Confidence 899999999999999999999999999998 89
Q ss_pred CEEeEecccccHHHHHHHhCCCCCHHHHHHHHHHHHHHcCCCEEEecchHHHHHHH
Q psy15126 241 PLFVYQVSGEYAMLAFAAQAGALDLKRALMETLTCLRRGGADVIISYYTPRVLEWL 296 (300)
Q Consensus 241 pi~aY~vSgeY~~~r~Aa~~~~~n~~eal~E~~~~~~r~GAD~Ii~y~A~~~ld~l 296 (300)
|+++|||||||+|+|+|+++||+|++++++|+|+++||+|||+||||||+++++||
T Consensus 269 P~~aYqVSGEYaMikaAa~~G~~d~~~~~~Esl~~~kRAGAd~IiTYfA~~~a~~L 324 (324)
T PF00490_consen 269 PVAAYQVSGEYAMIKAAAQNGWIDEKRVVLESLLSIKRAGADIIITYFAKEAAKWL 324 (324)
T ss_dssp -EEEEETHHHHHHHHHHHHTTSS-HHHHHHHHHHHHHHHT-SEEEETTHHHHHHHT
T ss_pred CEEEEEehHHHHHHHHHHHCCCcchhhHHHHHHHHHHHcCCCEEEeecHHHHHhhC
Confidence 99999999999999999999999999999999999999999999999999999997
No 7
>PRK13384 delta-aminolevulinic acid dehydratase; Provisional
Probab=100.00 E-value=2.2e-103 Score=740.48 Aligned_cols=238 Identities=40% Similarity=0.707 Sum_probs=233.9
Q ss_pred CCCCcccccCCCCCChHHHHHHHHHHhCCCcEEEeeecCCCCCCCCcceeeCCCCceecHHhHHHHHHHHHHHHHcCCCc
Q psy15126 2 DLRDETASFADTPDNPLFQVIPMIRKQFPSLTIACDVCLCGYTSHGHCAIFNEDGSIHYEKTLKRLADISKAFSDAGAHI 81 (300)
Q Consensus 2 ~~kd~~~s~a~~~~~~~~~~i~~ik~~~p~l~i~~Dvclc~yt~hGHcgi~~~~g~i~nd~Tl~~l~~~A~~~A~aGad~ 81 (300)
+.||+.||+|++|||++|||||.||++||+++|||||||||||+||||||++ +|.|+||+|+++|++||++||+||||+
T Consensus 85 ~~Kd~~gs~A~~~~g~v~~air~iK~~~pdl~vi~DVcLc~YT~hGHcGil~-~g~i~ND~Tl~~L~~~Als~A~AGADi 163 (322)
T PRK13384 85 HHKDAKGSDTWDDNGLLARMVRTIKAAVPEMMVIPDICFCEYTDHGHCGVLH-NDEVDNDATVENLVKQSVTAAKAGADM 163 (322)
T ss_pred CCCCCCcccccCCCChHHHHHHHHHHHCCCeEEEeeeecccCCCCCceeecc-CCcCccHHHHHHHHHHHHHHHHcCCCe
Confidence 4699999999999999999999999999999999999999999999999997 589999999999999999999999999
Q ss_pred cccCCCCcchHHHHHHHHhhCCCCCCcccccchhhhhcccchhhhhhhcCCCCCCCcceeeCCCCCCceEEEEeecccCC
Q psy15126 82 VAPSDMMDNRIHAIKQSLFTSRQSSTTGLLSYSAKFCSAFYGPFREAAGSAPTFGDRSCYQLPCGSKGLAIRAAVCLCGY 161 (300)
Q Consensus 82 vAPSdmMDgrv~air~aLd~~g~~~~v~ImsysaK~aS~~YGPfRda~gS~~~~gdr~~yQ~~~~~~~~ai~~dvclc~y 161 (300)
|||||||||||++||++||++|| .+|+|||||+||||+||||||||++|+|+ |||++|||||+|.++|+++.
T Consensus 164 VAPSdMMDGrV~aIR~aLd~~g~-~~v~ImSYsaKyaS~fYGPFRdAa~Sap~-gDrksYQmdp~n~~eAlre~------ 235 (322)
T PRK13384 164 LAPSAMMDGQVKAIRQGLDAAGF-EHVAILAHSAKFASSFYGPFRAAVDCELS-GDRKSYQLDYANGRQALLEA------ 235 (322)
T ss_pred EecccccccHHHHHHHHHHHCCC-CCCceeehhHhhhhhhcchHHHHhcCCCC-CCcccccCCCCCHHHHHHHH------
Confidence 99999999999999999999999 89999999999999999999999999997 99999999999999999997
Q ss_pred CCCCccccccCCCcccchHhHHHHHHHHHhhhcccccCCCCCccccchhhhcCCceeeccCcchHHHHHHHHHhhCCCCC
Q psy15126 162 TSHGHCAIFNEDGSIHYEKTLKRLADISKAFSDAVYVPNHNTDRFQARDVSQGADFLMVKPALPYLDIISEVKSRHPAYP 241 (300)
Q Consensus 162 t~hGHcgi~~~~g~i~nd~tl~~l~~~a~~~a~~~~~~~~n~~~~~~~Da~~GADivmVkPsmm~ld~Ir~~~d~~~~vp 241 (300)
++|++||||||||||+|+|||+||++|++| ++|
T Consensus 236 ----------------------------------------------~~D~~EGAD~lMVKPal~YLDIi~~~k~~~-~lP 268 (322)
T PRK13384 236 ----------------------------------------------LLDEAEGADILMVKPGTPYLDVLSRLRQET-HLP 268 (322)
T ss_pred ----------------------------------------------HhhHhhCCCEEEEcCCchHHHHHHHHHhcc-CCC
Confidence 899999999999999999999999999987 899
Q ss_pred EEeEecccccHHHHHHHhCCCCCHHHHHHHHHHHHHHcCCCEEEecchHHHHHH
Q psy15126 242 LFVYQVSGEYAMLAFAAQAGALDLKRALMETLTCLRRGGADVIISYYTPRVLEW 295 (300)
Q Consensus 242 i~aY~vSgeY~~~r~Aa~~~~~n~~eal~E~~~~~~r~GAD~Ii~y~A~~~ld~ 295 (300)
+++|||||||+|+|+|+++||+|++++++|+|+++||+|||+||||||+++++|
T Consensus 269 vaaYqVSGEYaMikaAa~~G~~d~~~~~~Esl~~~kRAGAd~IiTYfA~~~a~w 322 (322)
T PRK13384 269 LAAYQVGGEYAMIKFAALAGALDERAVVTETLGGLKRAGADLIVSYYAKQYAQW 322 (322)
T ss_pred EEEEEchHHHHHHHHHHHcCCccHHHHHHHHHHHHHHcCCCEEeehhHHHHhhC
Confidence 999999999999999999999999999999999999999999999999999998
No 8
>KOG2794|consensus
Probab=100.00 E-value=1.6e-94 Score=672.52 Aligned_cols=246 Identities=54% Similarity=0.997 Sum_probs=240.4
Q ss_pred CCCCcccccCCCCCChHHHHHHHHHHhCCCcEEEeeecCCCCCCCCcceeeCCCCceecHHhHHHHHHHHHHHHHcCCCc
Q psy15126 2 DLRDETASFADTPDNPLFQVIPMIRKQFPSLTIACDVCLCGYTSHGHCAIFNEDGSIHYEKTLKRLADISKAFSDAGAHI 81 (300)
Q Consensus 2 ~~kd~~~s~a~~~~~~~~~~i~~ik~~~p~l~i~~Dvclc~yt~hGHcgi~~~~g~i~nd~Tl~~l~~~A~~~A~aGad~ 81 (300)
..||++||+|++++||+.|+|+.||+.||||+|+||||||||||||||||+-|||.|.|++|+++|+++|+++|+||||+
T Consensus 95 ~~Kd~~gs~Ads~~gpvi~ai~~lr~~fPdL~i~cDVclc~YsshGHcGll~EdG~i~~~esv~rlaevAv~yAkAGa~v 174 (340)
T KOG2794|consen 95 ALKDPTGSEADSDNGPVIRAIRLLRDRFPDLVIACDVCLCEYSSHGHCGLLGEDGVINNDESVHRLAEVAVSYAKAGADV 174 (340)
T ss_pred cccCcccccccCCCCcHHHHHHHHHHhCcceEEEeeeeeccccCCCccceecccccccCHHHHHHHHHHHHHHHhcCCce
Confidence 47999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCCcchHHHHHHHHhhCCCCCCcccccchhhhhcccchhhhhhhcCCCCCCCcceeeCCCCCCceEEEEeecccCC
Q psy15126 82 VAPSDMMDNRIHAIKQSLFTSRQSSTTGLLSYSAKFCSAFYGPFREAAGSAPTFGDRSCYQLPCGSKGLAIRAAVCLCGY 161 (300)
Q Consensus 82 vAPSdmMDgrv~air~aLd~~g~~~~v~ImsysaK~aS~~YGPfRda~gS~~~~gdr~~yQ~~~~~~~~ai~~dvclc~y 161 (300)
|||||||||||++||++|+++|| .+|+|||||+||+|+||||||+|+.|+|.||||+||||+++.+++++|+-
T Consensus 175 VapSDmmDgRV~aIk~aL~~~~l-~~vsvmSYsaKfas~fyGpFR~aa~saP~fgDrkcYQlP~~~R~la~rA~------ 247 (340)
T KOG2794|consen 175 VAPSDMMDGRVGAIKQALDAEGL-QKVSVMSYSAKFASSFYGPFREAACSAPKFGDRKCYQLPANSRGLALRAR------ 247 (340)
T ss_pred ecchHhhcchHHHHHHHHHHhcc-cceEEEeehhhhhhccccchHHHhhcCcccCCcceeeCCCchHHHHHHHH------
Confidence 99999999999999999999999 69999999999999999999999999999999999999888888888886
Q ss_pred CCCCccccccCCCcccchHhHHHHHHHHHhhhcccccCCCCCccccchhhhcCCceeeccCcchHHHHHHHHHhhCCCCC
Q psy15126 162 TSHGHCAIFNEDGSIHYEKTLKRLADISKAFSDAVYVPNHNTDRFQARDVSQGADFLMVKPALPYLDIISEVKSRHPAYP 241 (300)
Q Consensus 162 t~hGHcgi~~~~g~i~nd~tl~~l~~~a~~~a~~~~~~~~n~~~~~~~Da~~GADivmVkPsmm~ld~Ir~~~d~~~~vp 241 (300)
++|+.||||++||||+|+|||+||.+++.++++|
T Consensus 248 ----------------------------------------------erD~aEGAD~lmVKPg~pyLDIir~~kd~~~dlp 281 (340)
T KOG2794|consen 248 ----------------------------------------------ERDVAEGADILMVKPGLPYLDIIRLLKDKTPDLP 281 (340)
T ss_pred ----------------------------------------------HhhhhccCceEEecCCCcHHHHHHHHHhcCCCCc
Confidence 8899999999999999999999999999999999
Q ss_pred EEeEecccccHHHHHHHhCCCCCHHHHHHHHHHHHHHcCCCEEEecchHHHHHHHhhCC
Q psy15126 242 LFVYQVSGEYAMLAFAAQAGALDLKRALMETLTCLRRGGADVIISYYTPRVLEWLREDK 300 (300)
Q Consensus 242 i~aY~vSgeY~~~r~Aa~~~~~n~~eal~E~~~~~~r~GAD~Ii~y~A~~~ld~l~~~~ 300 (300)
|.+|||||||+|+++|++.|.+|++.+++|++++++|+|||+|+|||+++.|+||.+.+
T Consensus 282 i~ayqVSGEyaMi~aaa~~g~~Dlk~~vmEsm~~frRAGAdiIlTYfapq~l~~L~~e~ 340 (340)
T KOG2794|consen 282 IAAYQVSGEYAMIKAAALAGMFDLKKVVMESMLGFRRAGADIILTYFAPQLLTWLCGEN 340 (340)
T ss_pred eEEEEecchHHHHHHHHhcccccHHHHHHHHHHHHHhcCCcEEEeeccHHHHHHhhcCC
Confidence 99999999999999999999999999999999999999999999999999999997653
No 9
>COG0113 HemB Delta-aminolevulinic acid dehydratase [Coenzyme metabolism]
Probab=100.00 E-value=7.7e-52 Score=390.01 Aligned_cols=189 Identities=24% Similarity=0.363 Sum_probs=177.1
Q ss_pred ecHHhHHHHHHHHHHHHHcCCCccccCCCC--cchHHHHHHHHhhCCCCCCcccccchhhhhcccchhhhhhhcCCCCCC
Q psy15126 59 HYEKTLKRLADISKAFSDAGAHIVAPSDMM--DNRIHAIKQSLFTSRQSSTTGLLSYSAKFCSAFYGPFREAAGSAPTFG 136 (300)
Q Consensus 59 ~nd~Tl~~l~~~A~~~A~aGad~vAPSdmM--Dgrv~air~aLd~~g~~~~v~ImsysaK~aS~~YGPfRda~gS~~~~g 136 (300)
.++.|+++|.+.+...+++|+..|..=... .-+.....++++++|+ .+
T Consensus 55 v~r~s~d~l~~~~~~~~~lGi~av~LFgvp~~~~Kd~~gs~A~~~~gi-vq----------------------------- 104 (330)
T COG0113 55 VYRYSLDRLVEEAEELVDLGIPAVILFGVPDDSKKDETGSEAYDPDGI-VQ----------------------------- 104 (330)
T ss_pred ceeccHHHHHHHHHHHHhcCCCEEEEeCCCcccccCcccccccCCCCh-HH-----------------------------
Confidence 478999999999999999999999885555 4488888899999998 55
Q ss_pred CcceeeCCCCCCceEEEEeecccCCCCCCccccccCCCcccchHhHHHHHHHHHhhhcccccCCCCCccccchhhhcCCc
Q psy15126 137 DRSCYQLPCGSKGLAIRAAVCLCGYTSHGHCAIFNEDGSIHYEKTLKRLADISKAFSDAVYVPNHNTDRFQARDVSQGAD 216 (300)
Q Consensus 137 dr~~yQ~~~~~~~~ai~~dvclc~yt~hGHcgi~~~~g~i~nd~tl~~l~~~a~~~a~~~~~~~~n~~~~~~~Da~~GAD 216 (300)
|.+..++..+|++.|++||||||||+||||||++++|.|+||+||++|+++|++| +++|||
T Consensus 105 -ravr~ik~~~p~l~iitDvcLceyT~HGHcGil~~~~~V~ND~Tle~l~k~Avs~------------------AeAGAd 165 (330)
T COG0113 105 -RAVRAIKEAFPELVVITDVCLCEYTDHGHCGILDDGGYVDNDETLEILAKQAVSQ------------------AEAGAD 165 (330)
T ss_pred -HHHHHHHHhCCCeEEEeeecccCCcCCCccccccCCCeecchHHHHHHHHHHHHH------------------HHcCCC
Confidence 8899999999999999999999999999999999999999999999999999999 699999
Q ss_pred eeeccCc-ch--HHHHHHHHHhh--CCCCCEEeEec---ccccHHHHHHH------------hCCCCCHHHHHHHHHHHH
Q psy15126 217 FLMVKPA-LP--YLDIISEVKSR--HPAYPLFVYQV---SGEYAMLAFAA------------QAGALDLKRALMETLTCL 276 (300)
Q Consensus 217 ivmVkPs-mm--~ld~Ir~~~d~--~~~vpi~aY~v---SgeY~~~r~Aa------------~~~~~n~~eal~E~~~~~ 276 (300)
|| +|| || ++++||++||. |.++|||||++ |++|||||+|+ ||++.|.+||++|+++|+
T Consensus 166 iv--APSdMMDGrV~aIR~aLd~ag~~~v~IMsYsaKyASafYGPFRdAa~Sap~~gdrktYQmDpaN~~EAlrE~~lD~ 243 (330)
T COG0113 166 IV--APSDMMDGRVGAIREALDEAGFIDVPIMSYSAKYASAFYGPFRDAAGSAPKFGDRKTYQMDPANRREALREIELDI 243 (330)
T ss_pred ee--cccccccchHHHHHHHHHHcCCCcceeeehhHHHhhhccccHHHHhhcccccCCcceeccCCcCHHHHHHHHHhhH
Confidence 99 999 77 99999999998 89999999999 99999999998 689999999999999999
Q ss_pred HHcCCCEEEecchHHHHHHHhhC
Q psy15126 277 RRGGADVIISYYTPRVLEWLRED 299 (300)
Q Consensus 277 ~r~GAD~Ii~y~A~~~ld~l~~~ 299 (300)
+||||+||||||++|||++++.
T Consensus 244 -~EGAD~lMVKPal~YLDIi~~v 265 (330)
T COG0113 244 -EEGADILMVKPALPYLDIIRRV 265 (330)
T ss_pred -hcCCcEEEEcCCchHHHHHHHH
Confidence 7999999999999999999875
No 10
>cd04824 eu_ALAD_PBGS_cysteine_rich Porphobilinogen synthase (PBGS), which is also called delta-aminolevulinic acid dehydratase (ALAD), catalyzes the condensation of two 5-aminolevulinic acid (ALA) molecules to form the pyrrole porphobilinogen (PBG), which is the second step in the biosynthesis of tetrapyrroles, such as heme, vitamin B12 and chlorophyll. This reaction involves the formation of a Schiff base link between the substrate and the enzyme. PBGSs are metalloenzymes, some of which have a second, allosteric metal binding site, beside the metal ion binding site in their active site. Although PBGS is a family of homologous enzymes, its metal ion utilization at catalytic site varies between zinc and magnesium and/or potassium. PBGS can be classified into two groups based on differences in their active site metal binding site. The eukaryotic PBGSs represented by this model, which contain a cysteine-rich zinc binding motif (DXCXCX(Y/F)X3G(H/Q)CG), require zinc for their activity, they
Probab=100.00 E-value=5.9e-51 Score=384.72 Aligned_cols=189 Identities=25% Similarity=0.310 Sum_probs=173.1
Q ss_pred ecHHhHHHHHHHHHHHHHcCCCccccCCCC--cchHHH-HHHHHhhCCCCCCcccccchhhhhcccchhhhhhhcCCCCC
Q psy15126 59 HYEKTLKRLADISKAFSDAGAHIVAPSDMM--DNRIHA-IKQSLFTSRQSSTTGLLSYSAKFCSAFYGPFREAAGSAPTF 135 (300)
Q Consensus 59 ~nd~Tl~~l~~~A~~~A~aGad~vAPSdmM--Dgrv~a-ir~aLd~~g~~~~v~ImsysaK~aS~~YGPfRda~gS~~~~ 135 (300)
.++.|++.|++.+..+.++|+..|..=... ..+... ..++++++|+ .+
T Consensus 45 ~~r~s~d~l~~~~~~~~~~Gi~~v~LFgv~~~~~Kd~~~gs~a~~~~g~-v~---------------------------- 95 (320)
T cd04824 45 INRYGVNRLEEFLRPLVAKGLRSVILFGVPLKPGKDDRSGSAADDEDGP-VI---------------------------- 95 (320)
T ss_pred ceeeCHHHHHHHHHHHHHCCCCEEEEeCCCccccCCcCccccccCCCCh-HH----------------------------
Confidence 478899999999999999999988774444 336666 7888888888 44
Q ss_pred CCcceeeCCCCCCceEEEEeecccCCCCCCccccccCCCcccchHhHHHHHHHHHhhhcccccCCCCCccccchhhhcCC
Q psy15126 136 GDRSCYQLPCGSKGLAIRAAVCLCGYTSHGHCAIFNEDGSIHYEKTLKRLADISKAFSDAVYVPNHNTDRFQARDVSQGA 215 (300)
Q Consensus 136 gdr~~yQ~~~~~~~~ai~~dvclc~yt~hGHcgi~~~~g~i~nd~tl~~l~~~a~~~a~~~~~~~~n~~~~~~~Da~~GA 215 (300)
|.+.+++..+|++.|++||||||||+||||||++++|.|+||+||++|++||++| +++||
T Consensus 96 --~air~iK~~~pdl~vi~Dvclc~YT~hGHcGil~~~g~vdND~Tl~~L~k~Avs~------------------A~AGA 155 (320)
T cd04824 96 --QAIKLIREEFPELLIACDVCLCEYTSHGHCGILYEDGTINNEASVKRLAEVALAY------------------AKAGA 155 (320)
T ss_pred --HHHHHHHHhCCCcEEEEeeeccCCCCCCcceeECCCCcCcCHHHHHHHHHHHHHH------------------HHhCC
Confidence 8899999999999999999999999999999998889999999999999999999 69999
Q ss_pred ceeeccCc-ch--HHHHHHHHHhh--C-CCCCEEeEec---ccccHHHHHHH------------hCCCCCHHHHHHHHHH
Q psy15126 216 DFLMVKPA-LP--YLDIISEVKSR--H-PAYPLFVYQV---SGEYAMLAFAA------------QAGALDLKRALMETLT 274 (300)
Q Consensus 216 DivmVkPs-mm--~ld~Ir~~~d~--~-~~vpi~aY~v---SgeY~~~r~Aa------------~~~~~n~~eal~E~~~ 274 (300)
||| +|| || ++.+||++||. | .++|||||++ |++|||||+|+ |+++.|.+||++|+.+
T Consensus 156 DiV--APSdMMDGrV~aIR~aLD~~G~~~~v~ImSYsaKyaS~fYGPFRdAa~Sap~~gDRksYQmdp~n~~eAlre~~~ 233 (320)
T cd04824 156 HIV--APSDMMDGRVRAIKQALIQAGLGNKVSVMSYSAKFASCLYGPFRDAACSAPSFGDRRCYQLPPGARGLALRAVER 233 (320)
T ss_pred CEE--ecccccccHHHHHHHHHHHCCCccCCeeeehHHHhhhhccchHHHHhcCCCCCCCccccCCCCcCHHHHHHHHHh
Confidence 999 999 77 99999999998 8 8999999999 99999999998 6899999999999999
Q ss_pred HHHHcCCCEEEecchHHHHHHHhhC
Q psy15126 275 CLRRGGADVIISYYTPRVLEWLRED 299 (300)
Q Consensus 275 ~~~r~GAD~Ii~y~A~~~ld~l~~~ 299 (300)
|+ +|||||||||||++|||++++.
T Consensus 234 D~-~EGAD~lMVKPal~YLDIi~~~ 257 (320)
T cd04824 234 DV-SEGADMIMVKPGTPYLDIVREA 257 (320)
T ss_pred hH-HhCCCEEEEcCCchHHHHHHHH
Confidence 99 7999999999999999999875
No 11
>cd00384 ALAD_PBGS Porphobilinogen synthase (PBGS), which is also called delta-aminolevulinic acid dehydratase (ALAD), catalyzes the condensation of two 5-aminolevulinic acid (ALA) molecules to form the pyrrole porphobilinogen (PBG), which is the second step in the biosynthesis of tetrapyrroles, such as heme, vitamin B12 and chlorophyll. This reaction involves the formation of a Schiff base link between the substrate and the enzyme. PBGSs are metalloenzymes, some of which have a second, allosteric metal binding site, beside the metal ion binding site in their active site. Although PBGS is a family of homologous enzymes, its metal ion utilization at catalytic site varies between zinc and magnesium and/or potassium. PBGS can be classified into two groups based on differences in their active site metal binding site. They either contain a cysteine-rich zinc binding site (consensus DXCXCX(Y/F)X3G(H/Q)CG) or an aspartate-rich magnesium binding site (consensus DXALDX(Y/F)X3G(H/Q)DG). The cyste
Probab=100.00 E-value=9.2e-51 Score=382.85 Aligned_cols=188 Identities=23% Similarity=0.372 Sum_probs=172.8
Q ss_pred ecHHhHHHHHHHHHHHHHcCCCccccCCCCcchHHHHHHHHhhCCCCCCcccccchhhhhcccchhhhhhhcCCCCCCCc
Q psy15126 59 HYEKTLKRLADISKAFSDAGAHIVAPSDMMDNRIHAIKQSLFTSRQSSTTGLLSYSAKFCSAFYGPFREAAGSAPTFGDR 138 (300)
Q Consensus 59 ~nd~Tl~~l~~~A~~~A~aGad~vAPSdmMDgrv~air~aLd~~g~~~~v~ImsysaK~aS~~YGPfRda~gS~~~~gdr 138 (300)
.++.|++.|.+.+..+.++|+..|..=...+.+.....++++++|+ .+ |
T Consensus 45 ~~r~s~d~l~~~~~~~~~~Gi~~v~LFgv~~~Kd~~gs~A~~~~g~-v~------------------------------~ 93 (314)
T cd00384 45 VYRLSVDSLVEEAEELADLGIRAVILFGIPEHKDEIGSEAYDPDGI-VQ------------------------------R 93 (314)
T ss_pred ceeeCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCcccccCCCCh-HH------------------------------H
Confidence 4678999999999999999999888744445677778888888888 54 8
Q ss_pred ceeeCCCCCCceEEEEeecccCCCCCCccccccCCCcccchHhHHHHHHHHHhhhcccccCCCCCccccchhhhcCCcee
Q psy15126 139 SCYQLPCGSKGLAIRAAVCLCGYTSHGHCAIFNEDGSIHYEKTLKRLADISKAFSDAVYVPNHNTDRFQARDVSQGADFL 218 (300)
Q Consensus 139 ~~yQ~~~~~~~~ai~~dvclc~yt~hGHcgi~~~~g~i~nd~tl~~l~~~a~~~a~~~~~~~~n~~~~~~~Da~~GADiv 218 (300)
.+..++..+|++.|++||||||||+||||||+++ |.|+||+||++|+++|++| +++|||||
T Consensus 94 air~iK~~~p~l~vi~DvcLc~YT~hGHcGil~~-~~idND~Tl~~L~k~Als~------------------A~AGADiV 154 (314)
T cd00384 94 AIRAIKEAVPELVVITDVCLCEYTDHGHCGILKD-DYVDNDATLELLAKIAVSH------------------AEAGADIV 154 (314)
T ss_pred HHHHHHHhCCCcEEEEeeeccCCCCCCcceeccC-CcCccHHHHHHHHHHHHHH------------------HHcCCCee
Confidence 8889999999999999999999999999999975 6999999999999999999 69999999
Q ss_pred eccCc-ch--HHHHHHHHHhh--CCCCCEEeEec---ccccHHHHHHH------------hCCCCCHHHHHHHHHHHHHH
Q psy15126 219 MVKPA-LP--YLDIISEVKSR--HPAYPLFVYQV---SGEYAMLAFAA------------QAGALDLKRALMETLTCLRR 278 (300)
Q Consensus 219 mVkPs-mm--~ld~Ir~~~d~--~~~vpi~aY~v---SgeY~~~r~Aa------------~~~~~n~~eal~E~~~~~~r 278 (300)
+|| || ++.+||++||. |.++|||||++ |++|||||+|+ |+++.|.+||++|+.+|+ +
T Consensus 155 --APSdMMDGrV~aIR~aLd~~g~~~v~ImsYsaKyaSafYGPFRdAa~Sap~~gDRktYQmdpan~~eAlre~~~D~-~ 231 (314)
T cd00384 155 --APSDMMDGRVAAIREALDEAGFSDVPIMSYSAKYASAFYGPFRDAADSAPSFGDRKTYQMDPANRREALREVELDI-E 231 (314)
T ss_pred --ecccccccHHHHHHHHHHHCCCCCCceeecHHHhhhhccchHHHHhhcCCCCCCccccCCCCCCHHHHHHHHHhhH-H
Confidence 999 77 99999999998 88999999999 99999999998 689999999999999999 7
Q ss_pred cCCCEEEecchHHHHHHHhhC
Q psy15126 279 GGADVIISYYTPRVLEWLRED 299 (300)
Q Consensus 279 ~GAD~Ii~y~A~~~ld~l~~~ 299 (300)
||||||||||+++|||++++.
T Consensus 232 EGAD~lMVKPal~YLDIi~~~ 252 (314)
T cd00384 232 EGADILMVKPALAYLDIIRDV 252 (314)
T ss_pred hCCCEEEEcCCchHHHHHHHH
Confidence 999999999999999999875
No 12
>PRK09283 delta-aminolevulinic acid dehydratase; Validated
Probab=100.00 E-value=1.4e-50 Score=382.95 Aligned_cols=188 Identities=23% Similarity=0.320 Sum_probs=175.8
Q ss_pred ecHHhHHHHHHHHHHHHHcCCCccccCCCCcchHHHHHHHHhhCCCCCCcccccchhhhhcccchhhhhhhcCCCCCCCc
Q psy15126 59 HYEKTLKRLADISKAFSDAGAHIVAPSDMMDNRIHAIKQSLFTSRQSSTTGLLSYSAKFCSAFYGPFREAAGSAPTFGDR 138 (300)
Q Consensus 59 ~nd~Tl~~l~~~A~~~A~aGad~vAPSdmMDgrv~air~aLd~~g~~~~v~ImsysaK~aS~~YGPfRda~gS~~~~gdr 138 (300)
.++.|++.|.+.+..+.++|+..|..=...+.+.....++++++|+ .+ |
T Consensus 53 ~~r~s~d~l~~~v~~~~~~Gi~av~LFgv~~~Kd~~gs~A~~~~g~-v~------------------------------r 101 (323)
T PRK09283 53 VYRLSIDLLVKEAEEAVELGIPAVALFGVPELKDEDGSEAYNPDGL-VQ------------------------------R 101 (323)
T ss_pred ceeeCHHHHHHHHHHHHHCCCCEEEEeCcCCCCCcccccccCCCCH-HH------------------------------H
Confidence 4778999999999999999999998844466688889999999998 55 8
Q ss_pred ceeeCCCCCCceEEEEeecccCCCCCCccccccCCCcccchHhHHHHHHHHHhhhcccccCCCCCccccchhhhcCCcee
Q psy15126 139 SCYQLPCGSKGLAIRAAVCLCGYTSHGHCAIFNEDGSIHYEKTLKRLADISKAFSDAVYVPNHNTDRFQARDVSQGADFL 218 (300)
Q Consensus 139 ~~yQ~~~~~~~~ai~~dvclc~yt~hGHcgi~~~~g~i~nd~tl~~l~~~a~~~a~~~~~~~~n~~~~~~~Da~~GADiv 218 (300)
.+.+++..+|++.|++||||||||+||||||+++ |.|+||+||++|++||++| +++|||+|
T Consensus 102 air~iK~~~p~l~vi~DVcLc~YT~hGHcGil~~-g~idND~Tl~~L~~~Al~~------------------A~AGaDiV 162 (323)
T PRK09283 102 AIRAIKKAFPELGVITDVCLDEYTSHGHCGILED-GYVDNDETLELLAKQALSQ------------------AEAGADIV 162 (323)
T ss_pred HHHHHHHhCCCcEEEEeeeccCCCCCCceecccC-CcCcCHHHHHHHHHHHHHH------------------HHhCCCEE
Confidence 8999999999999999999999999999999987 9999999999999999999 69999999
Q ss_pred eccCc-ch--HHHHHHHHHhh--CCCCCEEeEec---ccccHHHHHHH------------hCCCCCHHHHHHHHHHHHHH
Q psy15126 219 MVKPA-LP--YLDIISEVKSR--HPAYPLFVYQV---SGEYAMLAFAA------------QAGALDLKRALMETLTCLRR 278 (300)
Q Consensus 219 mVkPs-mm--~ld~Ir~~~d~--~~~vpi~aY~v---SgeY~~~r~Aa------------~~~~~n~~eal~E~~~~~~r 278 (300)
+|| || ++.+||++||. |.++|||||++ |++|||||+|+ |+++.|.+||++|+.+|+ +
T Consensus 163 --APSdMMDGrV~aIR~aLd~~g~~~v~ImSYsaKyaS~fYGPFRdA~~Sap~~gDrktYQmdp~n~~eAlre~~~D~-~ 239 (323)
T PRK09283 163 --APSDMMDGRVGAIREALDEAGFTDVPIMSYSAKYASAFYGPFRDAAGSAPQFGDRKTYQMDPANRREALREVALDI-E 239 (323)
T ss_pred --EcccccccHHHHHHHHHHHCCCCCCceeecHHHHHHhhhHHHHHHHhcCCCCCCccccCCCCCCHHHHHHHHHhhH-H
Confidence 999 77 99999999988 89999999999 99999999998 679999999999999999 7
Q ss_pred cCCCEEEecchHHHHHHHhhC
Q psy15126 279 GGADVIISYYTPRVLEWLRED 299 (300)
Q Consensus 279 ~GAD~Ii~y~A~~~ld~l~~~ 299 (300)
|||||||||||++|||++++.
T Consensus 240 EGAD~lMVKPal~YLDIi~~~ 260 (323)
T PRK09283 240 EGADMVMVKPALPYLDIIRRV 260 (323)
T ss_pred hCCCEEEEcCCchHHHHHHHH
Confidence 999999999999999999875
No 13
>PRK13384 delta-aminolevulinic acid dehydratase; Provisional
Probab=100.00 E-value=1.6e-50 Score=382.12 Aligned_cols=189 Identities=20% Similarity=0.278 Sum_probs=173.1
Q ss_pred ecHHhHHHHHHHHHHHHHcCCCccccCCCCcchHHHHHHHHhhCCCCCCcccccchhhhhcccchhhhhhhcCCCCCCCc
Q psy15126 59 HYEKTLKRLADISKAFSDAGAHIVAPSDMMDNRIHAIKQSLFTSRQSSTTGLLSYSAKFCSAFYGPFREAAGSAPTFGDR 138 (300)
Q Consensus 59 ~nd~Tl~~l~~~A~~~A~aGad~vAPSdmMDgrv~air~aLd~~g~~~~v~ImsysaK~aS~~YGPfRda~gS~~~~gdr 138 (300)
.++.|++.|++.+..+.++|+..|..=...+-+.....++++++|+ .+ |
T Consensus 55 ~~r~sid~l~~~~~~~~~~Gi~~v~lFgv~~~Kd~~gs~A~~~~g~-v~------------------------------~ 103 (322)
T PRK13384 55 ISRLPESALADEIERLYALGIRYVMPFGISHHKDAKGSDTWDDNGL-LA------------------------------R 103 (322)
T ss_pred cceECHHHHHHHHHHHHHcCCCEEEEeCCCCCCCCCcccccCCCCh-HH------------------------------H
Confidence 4688999999999999999999888633345577778888888888 54 8
Q ss_pred ceeeCCCCCCceEEEEeecccCCCCCCccccccCCCcccchHhHHHHHHHHHhhhcccccCCCCCccccchhhhcCCcee
Q psy15126 139 SCYQLPCGSKGLAIRAAVCLCGYTSHGHCAIFNEDGSIHYEKTLKRLADISKAFSDAVYVPNHNTDRFQARDVSQGADFL 218 (300)
Q Consensus 139 ~~yQ~~~~~~~~ai~~dvclc~yt~hGHcgi~~~~g~i~nd~tl~~l~~~a~~~a~~~~~~~~n~~~~~~~Da~~GADiv 218 (300)
.+..++..+|++.|++||||||||+||||||+++ |.|+||+||++|+++|++| +++|||||
T Consensus 104 air~iK~~~pdl~vi~DVcLc~YT~hGHcGil~~-g~i~ND~Tl~~L~~~Als~------------------A~AGADiV 164 (322)
T PRK13384 104 MVRTIKAAVPEMMVIPDICFCEYTDHGHCGVLHN-DEVDNDATVENLVKQSVTA------------------AKAGADML 164 (322)
T ss_pred HHHHHHHHCCCeEEEeeeecccCCCCCceeeccC-CcCccHHHHHHHHHHHHHH------------------HHcCCCeE
Confidence 8889999999999999999999999999999974 8899999999999999999 69999999
Q ss_pred eccCc-ch--HHHHHHHHHhh--CCCCCEEeEec---ccccHHHHHHH-----------hCCCCCHHHHHHHHHHHHHHc
Q psy15126 219 MVKPA-LP--YLDIISEVKSR--HPAYPLFVYQV---SGEYAMLAFAA-----------QAGALDLKRALMETLTCLRRG 279 (300)
Q Consensus 219 mVkPs-mm--~ld~Ir~~~d~--~~~vpi~aY~v---SgeY~~~r~Aa-----------~~~~~n~~eal~E~~~~~~r~ 279 (300)
+|| || ++.+||++||. |.++|||||++ |++|||||+|+ |+++.|.+||++|+.+|+ +|
T Consensus 165 --APSdMMDGrV~aIR~aLd~~g~~~v~ImSYsaKyaS~fYGPFRdAa~Sap~gDrksYQmdp~n~~eAlre~~~D~-~E 241 (322)
T PRK13384 165 --APSAMMDGQVKAIRQGLDAAGFEHVAILAHSAKFASSFYGPFRAAVDCELSGDRKSYQLDYANGRQALLEALLDE-AE 241 (322)
T ss_pred --ecccccccHHHHHHHHHHHCCCCCCceeehhHhhhhhhcchHHHHhcCCCCCCcccccCCCCCHHHHHHHHHhhH-hh
Confidence 999 77 99999999998 88999999999 99999999998 689999999999999999 79
Q ss_pred CCCEEEecchHHHHHHHhhCC
Q psy15126 280 GADVIISYYTPRVLEWLREDK 300 (300)
Q Consensus 280 GAD~Ii~y~A~~~ld~l~~~~ 300 (300)
|||||||||+++|||++++.|
T Consensus 242 GAD~lMVKPal~YLDIi~~~k 262 (322)
T PRK13384 242 GADILMVKPGTPYLDVLSRLR 262 (322)
T ss_pred CCCEEEEcCCchHHHHHHHHH
Confidence 999999999999999998753
No 14
>PF00490 ALAD: Delta-aminolevulinic acid dehydratase; InterPro: IPR001731 Tetrapyrroles are large macrocyclic compounds derived from a common biosynthetic pathway []. The end-product, uroporphyrinogen III, is used to synthesise a number of important molecules, including vitamin B12, haem, sirohaem, chlorophyll, coenzyme F430 and phytochromobilin []. The first stage in tetrapyrrole synthesis is the synthesis of 5-aminoaevulinic acid ALA via two possible routes: (1) condensation of succinyl CoA and glycine (C4 pathway) using ALA synthase (2.3.1.37 from EC), or (2) decarboxylation of glutamate (C5 pathway) via three different enzymes, glutamyl-tRNA synthetase (6.1.1.17 from EC) to charge a tRNA with glutamate, glutamyl-tRNA reductase (1.2.1.70 from EC) to reduce glutamyl-tRNA to glutamate-1-semialdehyde (GSA), and GSA aminotransferase (5.4.3.8 from EC) to catalyse a transamination reaction to produce ALA. The second stage is to convert ALA to uroporphyrinogen III, the first macrocyclic tetrapyrrolic structure in the pathway. This is achieved by the action of three enzymes in one common pathway: porphobilinogen (PBG) synthase (or ALA dehydratase, 4.2.1.24 from EC) to condense two ALA molecules to generate porphobilinogen; hydroxymethylbilane synthase (or PBG deaminase, 2.5.1.61 from EC) to polymerise four PBG molecules into preuroporphyrinogen (tetrapyrrole structure); and uroporphyrinogen III synthase (4.2.1.75 from EC) to link two pyrrole units together (rings A and D) to yield uroporphyrinogen III. Uroporphyrinogen III is the first branch point of the pathway. To synthesise cobalamin (vitamin B12), sirohaem, and coenzyme F430, uroporphyrinogen III needs to be converted into precorrin-2 by the action of uroporphyrinogen III methyltransferase (2.1.1.107 from EC). To synthesise haem and chlorophyll, uroporphyrinogen III needs to be decarboxylated into coproporphyrinogen III by the action of uroporphyrinogen III decarboxylase (4.1.1.37 from EC) []. This entry represents porphobilinogen (PBG) synthase (PBGS, or 5-aminoaevulinic acid dehydratase, or ALAD, 4.2.1.24 from EC), which functions during the second stage of tetrapyrrole biosynthesis. This enzyme catalyses a Knorr-type condensation reaction between two molecules of ALA to generate porphobilinogen, the pyrrolic building block used in later steps []. The structure of the enzyme is based on a TIM barrel topology made up of eight identical subunits, where each subunit binds to a metal ion that is essential for activity, usually zinc (in yeast, mammals and certain bacteria) or magnesium (in plants and other bacteria). A lysine has been implicated in the catalytic mechanism []. The lack of PBGS enzyme causes a rare porphyric disorder known as ALAD porphyria, which appears to involve conformational changes in the enzyme [.; GO: 0004655 porphobilinogen synthase activity, 0046872 metal ion binding, 0033014 tetrapyrrole biosynthetic process; PDB: 2C1H_A 1W1Z_A 1GZG_B 1W5O_B 1W5Q_B 2C18_A 1B4K_A 2C19_B 1W56_B 2C13_B ....
Probab=100.00 E-value=1.3e-50 Score=383.35 Aligned_cols=189 Identities=26% Similarity=0.369 Sum_probs=164.4
Q ss_pred ecHHhHHHHHHHHHHHHHcCCCcccc--CCCCcchHHHHHHHHhhCCCCCCcccccchhhhhcccchhhhhhhcCCCCCC
Q psy15126 59 HYEKTLKRLADISKAFSDAGAHIVAP--SDMMDNRIHAIKQSLFTSRQSSTTGLLSYSAKFCSAFYGPFREAAGSAPTFG 136 (300)
Q Consensus 59 ~nd~Tl~~l~~~A~~~A~aGad~vAP--SdmMDgrv~air~aLd~~g~~~~v~ImsysaK~aS~~YGPfRda~gS~~~~g 136 (300)
.++.|++.|.+.+..+.++|+.-|.. ....+.+.....++++++|+ .+
T Consensus 51 ~~r~sid~l~~~v~~~~~~GI~~v~lFgvi~~~~Kd~~gs~a~~~~g~-v~----------------------------- 100 (324)
T PF00490_consen 51 VYRYSIDSLVKEVEEAVDLGIRAVILFGVIDPSKKDEEGSEAYNPDGL-VQ----------------------------- 100 (324)
T ss_dssp EEEEEHHHHHHHHHHHHHTT--EEEEEEE-SCSC-BSS-GGGGSTTSH-HH-----------------------------
T ss_pred eeeeCHHHHHHHHHHHHHCCCCEEEEEeeCCcccCCcchhcccCCCCh-HH-----------------------------
Confidence 46789999999999999999998886 43467778888889999998 55
Q ss_pred CcceeeCCCCCCceEEEEeecccCCCCCCccccc-cCCCcccchHhHHHHHHHHHhhhcccccCCCCCccccchhhhcCC
Q psy15126 137 DRSCYQLPCGSKGLAIRAAVCLCGYTSHGHCAIF-NEDGSIHYEKTLKRLADISKAFSDAVYVPNHNTDRFQARDVSQGA 215 (300)
Q Consensus 137 dr~~yQ~~~~~~~~ai~~dvclc~yt~hGHcgi~-~~~g~i~nd~tl~~l~~~a~~~a~~~~~~~~n~~~~~~~Da~~GA 215 (300)
|.+.+++..+|++.|++||||||||+||||||+ +++|.|+||+||++|+++|++| +++||
T Consensus 101 -~air~iK~~~pdl~vi~Dvclc~YT~hGHcGil~~~~g~idND~Tl~~Lak~Al~~------------------A~AGA 161 (324)
T PF00490_consen 101 -RAIRAIKKAFPDLLVITDVCLCEYTSHGHCGILDDEDGEIDNDETLERLAKQALSH------------------AEAGA 161 (324)
T ss_dssp -HHHHHHHHHSTTSEEEEEE-STTTBTSSSSSEB-CTTSSBEHHHHHHHHHHHHHHH------------------HHHT-
T ss_pred -HHHHHHHHhCCCcEEEEecccccccCCCceEEEECCCCeEecHHHHHHHHHHHHHH------------------HHhCC
Confidence 888889999999999999999999999999999 7999999999999999999999 69999
Q ss_pred ceeeccCc-ch--HHHHHHHHHhh--CCCCCEEeEec---ccccHHHHHHH------------hCCCCCHHHHHHHHHHH
Q psy15126 216 DFLMVKPA-LP--YLDIISEVKSR--HPAYPLFVYQV---SGEYAMLAFAA------------QAGALDLKRALMETLTC 275 (300)
Q Consensus 216 DivmVkPs-mm--~ld~Ir~~~d~--~~~vpi~aY~v---SgeY~~~r~Aa------------~~~~~n~~eal~E~~~~ 275 (300)
||| +|| || ++.+||++||. |.++|||||++ |++|||||+|+ |+++.|.+||++|+.+|
T Consensus 162 DiV--APSdMMDGrV~aIR~aLd~~g~~~v~ImSYsaKyaS~fYGPFRdAa~Sap~fgDrktYQmdp~N~~EAlre~~~D 239 (324)
T PF00490_consen 162 DIV--APSDMMDGRVGAIREALDEAGFSDVPIMSYSAKYASAFYGPFRDAAGSAPKFGDRKTYQMDPANRREALREAELD 239 (324)
T ss_dssp SEE--EE-S--TTHHHHHHHHHHHTTCTTSEEEEEEEEB-SSTGHHHHHHHT-HHSSSTSTTTSB-TT-HHHHHHHHHHH
T ss_pred Cee--ccccccCCHHHHHHHHHHhCCCCCccEEechHHHhhhhhHhHHHHhcCCccccCcccccCCCccHHHHHHHhhhh
Confidence 999 999 77 99999999988 89999999999 99999999998 67999999999999999
Q ss_pred HHHcCCCEEEecchHHHHHHHhhC
Q psy15126 276 LRRGGADVIISYYTPRVLEWLRED 299 (300)
Q Consensus 276 ~~r~GAD~Ii~y~A~~~ld~l~~~ 299 (300)
+ .|||||||||||++|||++++.
T Consensus 240 ~-~EGAD~lMVKPal~YLDIi~~~ 262 (324)
T PF00490_consen 240 I-EEGADILMVKPALPYLDIIRRV 262 (324)
T ss_dssp H-HTT-SEEEEESSGGGHHHHHHH
T ss_pred H-hhCCCEEEeecchhHHHHHHHH
Confidence 9 7999999999999999999875
No 15
>cd04823 ALAD_PBGS_aspartate_rich Porphobilinogen synthase (PBGS), which is also called delta-aminolevulinic acid dehydratase (ALAD), catalyzes the condensation of two 5-aminolevulinic acid (ALA) molecules to form the pyrrole porphobilinogen (PBG), which is the second step in the biosynthesis of tetrapyrroles, such as heme, vitamin B12 and chlorophyll. This reaction involves the formation of a Schiff base link between the substrate and the enzyme. PBGSs are metalloenzymes, some of which have a second, allosteric metal binding site, beside the metal ion binding site in their active site. Although PBGS is a family of homologous enzymes, its metal ion utilization at catalytic site varies between zinc and magnesium and/or potassium. PBGS can be classified into two groups based on differences in their active site metal binding site. All of PBGS_aspartate_rich contain an aspartate rich metal binding site with the general sequence DXALDX(Y/F)X3G(H/Q)DG. They also contain an allosteric magnesiu
Probab=100.00 E-value=9.9e-50 Score=376.62 Aligned_cols=188 Identities=21% Similarity=0.243 Sum_probs=167.9
Q ss_pred ecHHhHHHHHHHHHHHHHcCCCccccCCC--CcchHHHHHHHHhhCCCCCCcccccchhhhhcccchhhhhhhcCCCCCC
Q psy15126 59 HYEKTLKRLADISKAFSDAGAHIVAPSDM--MDNRIHAIKQSLFTSRQSSTTGLLSYSAKFCSAFYGPFREAAGSAPTFG 136 (300)
Q Consensus 59 ~nd~Tl~~l~~~A~~~A~aGad~vAPSdm--MDgrv~air~aLd~~g~~~~v~ImsysaK~aS~~YGPfRda~gS~~~~g 136 (300)
.++.|++.|.+....+.++|+.-|..=.. -+-+.....++++++|+ .+
T Consensus 48 ~~r~s~d~l~~~v~~~~~~Gi~~v~lFgv~~~~~KD~~gs~A~~~~g~-v~----------------------------- 97 (320)
T cd04823 48 VFRLSIDELLKEAEEAVDLGIPAVALFPVTPPELKSEDGSEAYNPDNL-VC----------------------------- 97 (320)
T ss_pred ceeeCHHHHHHHHHHHHHcCCCEEEEecCCCcccCCcccccccCCCCh-HH-----------------------------
Confidence 46778888999888888888887766332 23466667777777777 44
Q ss_pred CcceeeCCCCCCceEEEEeecccCCCCCCccccccCCCcccchHhHHHHHHHHHhhhcccccCCCCCccccchhhhcCCc
Q psy15126 137 DRSCYQLPCGSKGLAIRAAVCLCGYTSHGHCAIFNEDGSIHYEKTLKRLADISKAFSDAVYVPNHNTDRFQARDVSQGAD 216 (300)
Q Consensus 137 dr~~yQ~~~~~~~~ai~~dvclc~yt~hGHcgi~~~~g~i~nd~tl~~l~~~a~~~a~~~~~~~~n~~~~~~~Da~~GAD 216 (300)
|.+.+++..+|++.|++||||||||+||||||+++ |.|+||+||++|+++|++| +++|||
T Consensus 98 -~air~iK~~~p~l~vi~DVclc~YT~hGHcGil~~-~~idND~Tl~~L~~~Avs~------------------A~AGAD 157 (320)
T cd04823 98 -RAIRAIKEAFPELGIITDVALDPYTSHGHDGIVRD-GGILNDETVEVLCKQALVQ------------------AEAGAD 157 (320)
T ss_pred -HHHHHHHHhCCCcEEEEeeeccCCCCCCcceeccC-CcCcCHHHHHHHHHHHHHH------------------HHhCCC
Confidence 88889999999999999999999999999999976 4599999999999999999 699999
Q ss_pred eeeccCc-ch--HHHHHHHHHhh--CCCCCEEeEec---ccccHHHHHHH------------hCCCCCHHHHHHHHHHHH
Q psy15126 217 FLMVKPA-LP--YLDIISEVKSR--HPAYPLFVYQV---SGEYAMLAFAA------------QAGALDLKRALMETLTCL 276 (300)
Q Consensus 217 ivmVkPs-mm--~ld~Ir~~~d~--~~~vpi~aY~v---SgeY~~~r~Aa------------~~~~~n~~eal~E~~~~~ 276 (300)
|| +|| || ++.+||++||. |.++|||||++ |++|||||+|+ |+++.|.+||++|+.+|+
T Consensus 158 iV--APSdMMDGrV~aIR~aLd~~g~~~v~ImSYsaKyaS~fYGPFRdAa~Sap~fgDRksYQmdp~n~~eAlre~~~Di 235 (320)
T cd04823 158 IV--APSDMMDGRIGAIREALDAEGFTNVSILSYAAKYASAFYGPFRDALGSAPRKGDKKTYQMDPANSREALREVALDI 235 (320)
T ss_pred EE--EcccchhhHHHHHHHHHHHCCCCCCceeechHHhhhhccchhHHHhcCCCCCCCccccCCCCCCHHHHHHHHHhhH
Confidence 99 999 77 99999999998 88999999999 99999999998 689999999999999999
Q ss_pred HHcCCCEEEecchHHHHHHHhhC
Q psy15126 277 RRGGADVIISYYTPRVLEWLRED 299 (300)
Q Consensus 277 ~r~GAD~Ii~y~A~~~ld~l~~~ 299 (300)
+|||||||||||++|||++++.
T Consensus 236 -~EGAD~lMVKPal~YLDIi~~~ 257 (320)
T cd04823 236 -AEGADMVMVKPGMPYLDIIRRV 257 (320)
T ss_pred -HhCCCEEEEcCCchHHHHHHHH
Confidence 6999999999999999999875
No 16
>KOG2794|consensus
Probab=100.00 E-value=1.4e-39 Score=304.39 Aligned_cols=187 Identities=24% Similarity=0.393 Sum_probs=158.6
Q ss_pred CccccCCCCcchHHHH----HH---HHhhCCCCCCcccccchhhhhcccch-h---hhhhhcCCCCC--C--CcceeeCC
Q psy15126 80 HIVAPSDMMDNRIHAI----KQ---SLFTSRQSSTTGLLSYSAKFCSAFYG-P---FREAAGSAPTF--G--DRSCYQLP 144 (300)
Q Consensus 80 d~vAPSdmMDgrv~ai----r~---aLd~~g~~~~v~ImsysaK~aS~~YG-P---fRda~gS~~~~--g--dr~~yQ~~ 144 (300)
|-+-|.++|+|+..-. .| .|.+.|++ . | .+|| | -+|..||.+.. | -|.+.-++
T Consensus 52 dd~~pI~SmPg~~r~G~~rL~e~l~plv~~Gl~-s--V---------iLfgvv~~~~Kd~~gs~Ads~~gpvi~ai~~lr 119 (340)
T KOG2794|consen 52 DDFTPIDSMPGIYRLGVNRLKEELAPLVAKGLR-S--V---------ILFGVVPEALKDPTGSEADSDNGPVIRAIRLLR 119 (340)
T ss_pred ccccccccCCchhHHHHHHHHHHHHHHHHhccc-e--E---------EEecCCCccccCcccccccCCCCcHHHHHHHHH
Confidence 4467888999875433 33 33447883 2 3 3788 3 27778887764 2 46677778
Q ss_pred CCCCceEEEEeecccCCCCCCccccccCCCcccchHhHHHHHHHHHhhhcccccCCCCCccccchhhhcCCceeeccCc-
Q psy15126 145 CGSKGLAIRAAVCLCGYTSHGHCAIFNEDGSIHYEKTLKRLADISKAFSDAVYVPNHNTDRFQARDVSQGADFLMVKPA- 223 (300)
Q Consensus 145 ~~~~~~ai~~dvclc~yt~hGHcgi~~~~g~i~nd~tl~~l~~~a~~~a~~~~~~~~n~~~~~~~Da~~GADivmVkPs- 223 (300)
..+|++.|.+||||||||||||||++.|||.|.||+|+++|+++|+++ +++|||+| +||
T Consensus 120 ~~fPdL~i~cDVclc~YsshGHcGll~EdG~i~~~esv~rlaevAv~y------------------AkAGa~vV--apSD 179 (340)
T KOG2794|consen 120 DRFPDLVIACDVCLCEYSSHGHCGLLGEDGVINNDESVHRLAEVAVSY------------------AKAGADVV--APSD 179 (340)
T ss_pred HhCcceEEEeeeeeccccCCCccceecccccccCHHHHHHHHHHHHHH------------------HhcCCcee--cchH
Confidence 999999999999999999999999999999999999999999999999 69999999 999
Q ss_pred ch--HHHHHHHHHhh--CCCCCEEeEec---ccccHHHHHHHhC-----------CCCCHHHHHHHHHH-HHHHcCCCEE
Q psy15126 224 LP--YLDIISEVKSR--HPAYPLFVYQV---SGEYAMLAFAAQA-----------GALDLKRALMETLT-CLRRGGADVI 284 (300)
Q Consensus 224 mm--~ld~Ir~~~d~--~~~vpi~aY~v---SgeY~~~r~Aa~~-----------~~~n~~eal~E~~~-~~~r~GAD~I 284 (300)
|| ++.+||++++. +.+|.||||++ |++|||||+|++. -+.|.+++.+|+.. |. +||||+|
T Consensus 180 mmDgRV~aIk~aL~~~~l~~vsvmSYsaKfas~fyGpFR~aa~saP~fgDrkcYQlP~~~R~la~rA~erD~-aEGAD~l 258 (340)
T KOG2794|consen 180 MMDGRVGAIKQALDAEGLQKVSVMSYSAKFASSFYGPFREAACSAPKFGDRKCYQLPANSRGLALRARERDV-AEGADIL 258 (340)
T ss_pred hhcchHHHHHHHHHHhcccceEEEeehhhhhhccccchHHHhhcCcccCCcceeeCCCchHHHHHHHHHhhh-hccCceE
Confidence 66 99999999977 78999999999 9999999999942 27799999999888 88 8999999
Q ss_pred EecchHHHHHHHhhC
Q psy15126 285 ISYYTPRVLEWLRED 299 (300)
Q Consensus 285 i~y~A~~~ld~l~~~ 299 (300)
||||+++|||++|..
T Consensus 259 mVKPg~pyLDIir~~ 273 (340)
T KOG2794|consen 259 MVKPGLPYLDIIRLL 273 (340)
T ss_pred EecCCCcHHHHHHHH
Confidence 999999999999854
No 17
>TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase. at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase.
Probab=96.60 E-value=0.021 Score=49.64 Aligned_cols=68 Identities=16% Similarity=0.244 Sum_probs=46.2
Q ss_pred CCCCChHHHHHHHHHHhCCCcEEEeeecCCCCCCCCcceeeCCCCceecHHhHHHHHHHHHHHHHcCCCccccCCCCcc-
Q psy15126 12 DTPDNPLFQVIPMIRKQFPSLTIACDVCLCGYTSHGHCAIFNEDGSIHYEKTLKRLADISKAFSDAGAHIVAPSDMMDN- 90 (300)
Q Consensus 12 ~~~~~~~~~~i~~ik~~~p~l~i~~Dvclc~yt~hGHcgi~~~~g~i~nd~Tl~~l~~~A~~~A~aGad~vAPSdmMDg- 90 (300)
..+.| .+.|+.||+.+|+..+++|+-+. + .|. .++..++++|||+|.-.-..++
T Consensus 35 ~~~~g--~~~i~~l~~~~~~~~i~~d~k~~-----------d-~~~-----------~~~~~~~~~Gad~i~vh~~~~~~ 89 (206)
T TIGR03128 35 IKNEG--IEAVKEMKEAFPDRKVLADLKTM-----------D-AGE-----------YEAEQAFAAGADIVTVLGVADDA 89 (206)
T ss_pred HHHhC--HHHHHHHHHHCCCCEEEEEEeec-----------c-chH-----------HHHHHHHHcCCCEEEEeccCCHH
Confidence 33444 47899999999999999998542 1 121 1567789999999975444333
Q ss_pred hHHHHHHHHhhCCC
Q psy15126 91 RIHAIKQSLFTSRQ 104 (300)
Q Consensus 91 rv~air~aLd~~g~ 104 (300)
.+..+.+...+.|.
T Consensus 90 ~~~~~i~~~~~~g~ 103 (206)
T TIGR03128 90 TIKGAVKAAKKHGK 103 (206)
T ss_pred HHHHHHHHHHHcCC
Confidence 45666666666676
No 18
>cd08148 RuBisCO_large Ribulose bisphosphate carboxylase large chain. Ribulose bisphosphate carboxylase (Rubisco) plays an important role in the Calvin reductive pentose phosphate pathway. It catalyzes the primary CO2 fixation step. Rubisco is activated by carbamylation of an active site lysine, stabilized by a divalent cation, which then catalyzes the proton abstraction from the substrate ribulose 1,5 bisphosphate (RuBP) and leads to the formation of two molecules of 3-phosphoglycerate. Members of the Rubisco family can be divided into 4 subgroups, Form I-IV, which differ in their taxonomic distribution and subunit composition. Form I-III have Rubisco activity, while Form IV, also called Rubisco-like proteins (RLP), are missing critical active site residues and therefore do not catalyze CO2 fixation. They are believed to utilize a related enzymatic mechanism, but have divergent functions.
Probab=96.40 E-value=0.018 Score=56.79 Aligned_cols=138 Identities=17% Similarity=0.256 Sum_probs=90.4
Q ss_pred HhHHHHHHHHHHHHHcCCCccc--------cCCCCcchHHHHHHHHhhCCCCCCcccccchhhhhcccchhhhhhhcCCC
Q psy15126 62 KTLKRLADISKAFSDAGAHIVA--------PSDMMDNRIHAIKQSLFTSRQSSTTGLLSYSAKFCSAFYGPFREAAGSAP 133 (300)
Q Consensus 62 ~Tl~~l~~~A~~~A~aGad~vA--------PSdmMDgrv~air~aLd~~g~~~~v~ImsysaK~aS~~YGPfRda~gS~~ 133 (300)
.|.+.+++++..++..|+|+|= |-.-+..||.+..+++++..-. .
T Consensus 140 lsp~~~a~~~y~~~~GG~D~IKDDE~l~~q~~~p~~eRv~~~~~a~~~a~~e-T-------------------------- 192 (366)
T cd08148 140 LNPKYTAEAAYAAALGGLDLIKDDETLTDQPFCPLRDRITEVAAALDRVQEE-T-------------------------- 192 (366)
T ss_pred CCHHHHHHHHHHHHhCCCCccccccccCCCCCCcHHHHHHHHHHHHHHHHHh-h--------------------------
Confidence 5889999999999999999873 3455677888877777776541 1
Q ss_pred CCCCcceeeCCCCCCceEEEEeecccCCCCCCccccccCCCcccchHhHHHHHHHHHhhhcccccCCCCCccccchhhhc
Q psy15126 134 TFGDRSCYQLPCGSKGLAIRAAVCLCGYTSHGHCAIFNEDGSIHYEKTLKRLADISKAFSDAVYVPNHNTDRFQARDVSQ 213 (300)
Q Consensus 134 ~~gdr~~yQ~~~~~~~~ai~~dvclc~yt~hGHcgi~~~~g~i~nd~tl~~l~~~a~~~a~~~~~~~~n~~~~~~~Da~~ 213 (300)
|.++.|..+-. +.. ++.++ .+.-. .++
T Consensus 193 --G~~~~y~~NiT---------------------------~~~--~em~~----ra~~~------------------~~~ 219 (366)
T cd08148 193 --GEKKLYAVNVT---------------------------AGT--FEIIE----RAERA------------------LEL 219 (366)
T ss_pred --CCcceEEEEcc---------------------------CCH--HHHHH----HHHHH------------------HHh
Confidence 55666665532 101 22222 22222 689
Q ss_pred CCceeeccCcchHHHHHHHHHhhC-CCCCEEeEecccccHHHHHHHhCCCCCHHHHHHHHHHHHHHcCCCEEEe
Q psy15126 214 GADFLMVKPALPYLDIISEVKSRH-PAYPLFVYQVSGEYAMLAFAAQAGALDLKRALMETLTCLRRGGADVIIS 286 (300)
Q Consensus 214 GADivmVkPsmm~ld~Ir~~~d~~-~~vpi~aY~vSgeY~~~r~Aa~~~~~n~~eal~E~~~~~~r~GAD~Ii~ 286 (300)
|+.++||.|-..=++.++.+.+.+ .++||+++-+ ..|++-...+.| +.. .++-.|..+ +|||.+++
T Consensus 220 G~~~~mv~~~~~G~~~l~~l~~~~~~~l~IhaHrA--~~ga~~~~~~~G-~~~--~~l~kl~RL--aGaD~~~~ 286 (366)
T cd08148 220 GANMLMVDVLTAGFSALQALAEDFEIDLPIHVHRA--MHGAVTRSKFHG-ISM--LVLAKLLRM--AGGDFIHT 286 (366)
T ss_pred CCCEEEEeccccchHHHHHHHHhCcCCcEEEeccc--cccccccCCCCC-cCH--HHHHHHHHH--cCCCcccc
Confidence 999999999866566677777642 3899999955 444433223345 343 445555555 79999875
No 19
>cd08205 RuBisCO_IV_RLP Ribulose bisphosphate carboxylase like proteins, Rubisco-Form IV. Ribulose bisphosphate carboxylase (Rubisco) plays an important role in the Calvin reductive pentose phosphate pathway. It catalyzes the primary CO2 fixation step. Rubisco is activated by carbamylation of an active site lysine, stabilized by a divalent cation, which then catalyzes the proton abstraction from the substrate ribulose 1,5 bisphosphate (RuBP) and leads to the formation of two molecules of 3-phosphoglycerate. Members of the Rubisco family can be divided into 4 subgroups, Form I-IV, which differ in their taxonomic distribution and subunit composition. Form I-III have Rubisco activity, while Form IV, also called Rubisco-like proteins (RLP), are missing critical active site residues and therefore do not catalyze CO2 fixation. They are believed to utilize a related enzymatic mechanism, but have divergent functions, like for example 2,3-diketo-5-methylthiopentyl-1-phosphate enolase or 5-methyl
Probab=96.38 E-value=0.014 Score=56.97 Aligned_cols=137 Identities=21% Similarity=0.375 Sum_probs=86.1
Q ss_pred HHhHHHHHHHHHHHHHcCCCcccc--------CCCCcchHHHHHHHHhhCCCCCCcccccchhhhhcccchhhhhhhcCC
Q psy15126 61 EKTLKRLADISKAFSDAGAHIVAP--------SDMMDNRIHAIKQSLFTSRQSSTTGLLSYSAKFCSAFYGPFREAAGSA 132 (300)
Q Consensus 61 d~Tl~~l~~~A~~~A~aGad~vAP--------SdmMDgrv~air~aLd~~g~~~~v~ImsysaK~aS~~YGPfRda~gS~ 132 (300)
..+.+.+++++..+++.|+|.|-. ...+.-|+..++++.+..+-. .
T Consensus 142 gld~~~la~~~~~l~~gGvD~Ikdde~~ge~~~~~~eER~~~v~~av~~a~~~-T------------------------- 195 (367)
T cd08205 142 GLSPEELAELAYELALGGIDLIKDDELLADQPYAPFEERVRACMEAVRRANEE-T------------------------- 195 (367)
T ss_pred CCCHHHHHHHHHHHHhcCCCeeeccccccCcccCCHHHHHHHHHHHHHHHHHh-h-------------------------
Confidence 467889999999999999999954 555667888888888776631 1
Q ss_pred CCCCCcceeeCCCCCCceEEEEeecccCCCCCCccccccCCCcccchHhHHHHHHHHHhhhcccccCCCCCccccchhhh
Q psy15126 133 PTFGDRSCYQLPCGSKGLAIRAAVCLCGYTSHGHCAIFNEDGSIHYEKTLKRLADISKAFSDAVYVPNHNTDRFQARDVS 212 (300)
Q Consensus 133 ~~~gdr~~yQ~~~~~~~~ai~~dvclc~yt~hGHcgi~~~~g~i~nd~tl~~l~~~a~~~a~~~~~~~~n~~~~~~~Da~ 212 (300)
|.++.|...-. +. .++++++ |.. -.+
T Consensus 196 ---G~~~~y~~nit---------------------------~~--~~e~i~~----a~~------------------a~~ 221 (367)
T cd08205 196 ---GRKTLYAPNIT---------------------------GD--PDELRRR----ADR------------------AVE 221 (367)
T ss_pred ---CCcceEEEEcC---------------------------CC--HHHHHHH----HHH------------------HHH
Confidence 33444433221 11 1233222 222 157
Q ss_pred cCCceeeccCcchHHHHHHHHHhhCCCCCEEeEecccccHHHHHHHhCCCCCHHHHHHHHHHHHHHcCCCEEE
Q psy15126 213 QGADFLMVKPALPYLDIISEVKSRHPAYPLFVYQVSGEYAMLAFAAQAGALDLKRALMETLTCLRRGGADVII 285 (300)
Q Consensus 213 ~GADivmVkPsmm~ld~Ir~~~d~~~~vpi~aY~vSgeY~~~r~Aa~~~~~n~~eal~E~~~~~~r~GAD~Ii 285 (300)
+|||.|||.|-......++++.+. +++||+++-. ..|++....+.|. .. .++-.+..+ +|||+++
T Consensus 222 ~Gad~vmv~~~~~g~~~~~~l~~~-~~lpi~~H~a--~~ga~~~~~~~g~-~~--~~~~kl~Rl--aGad~~~ 286 (367)
T cd08205 222 AGANALLINPNLVGLDALRALAED-PDLPIMAHPA--FAGALSRSPDYGS-HF--LLLGKLMRL--AGADAVI 286 (367)
T ss_pred cCCCEEEEecccccccHHHHHHhc-CCCeEEEccC--cccccccCCCCcC-CH--HHHHHHHHH--cCCCccc
Confidence 999999999997778888888776 4999999955 3333332222222 21 233333333 6888764
No 20
>TIGR03326 rubisco_III ribulose bisphosphate carboxylase, type III. Members of this protein family are the archaeal, single chain, type III form of ribulose bisphosphate carboxylase, or RuBisCO. Members act is a three-step pathway for conversion of the sugar moiety of AMP to two molecules of 3-phosphoglycerate. Many of these species use ADP-dependent sugar kinases, which form AMP, for glycolysis.
Probab=95.99 E-value=0.03 Score=56.06 Aligned_cols=140 Identities=13% Similarity=0.194 Sum_probs=91.7
Q ss_pred HHhHHHHHHHHHHHHHcCCCccc--------cCCCCcchHHHHHHHHhhCCCCCCcccccchhhhhcccchhhhhhhcCC
Q psy15126 61 EKTLKRLADISKAFSDAGAHIVA--------PSDMMDNRIHAIKQSLFTSRQSSTTGLLSYSAKFCSAFYGPFREAAGSA 132 (300)
Q Consensus 61 d~Tl~~l~~~A~~~A~aGad~vA--------PSdmMDgrv~air~aLd~~g~~~~v~ImsysaK~aS~~YGPfRda~gS~ 132 (300)
=.|.+.+++++..++..|+|+|= |-.-+..||.+..+++++..-. .
T Consensus 156 Glsp~~~a~~~~~~~~GGvD~IKDDE~l~~q~~~p~~eRv~~~~~a~~~a~~e-T------------------------- 209 (412)
T TIGR03326 156 GLSTEEHAKVAYELWSGGVDLLKDDENLTSQPFNRFEERVEKLYKVRDKVEAE-T------------------------- 209 (412)
T ss_pred cCChHHHHHHHHHHHhcCCceeecCCCCCCCCCccHHHHHHHHHHHHHHHHHH-h-------------------------
Confidence 36899999999999999999873 4566778888888888776542 1
Q ss_pred CCCCCcceeeCCCCCCceEEEEeecccCCCCCCccccccCCCcccchHhHHHHHHHHHhhhcccccCCCCCccccchhhh
Q psy15126 133 PTFGDRSCYQLPCGSKGLAIRAAVCLCGYTSHGHCAIFNEDGSIHYEKTLKRLADISKAFSDAVYVPNHNTDRFQARDVS 212 (300)
Q Consensus 133 ~~~gdr~~yQ~~~~~~~~ai~~dvclc~yt~hGHcgi~~~~g~i~nd~tl~~l~~~a~~~a~~~~~~~~n~~~~~~~Da~ 212 (300)
|.++.|..+-- + . -++ +.+.+.-. .+
T Consensus 210 ---G~~~~ya~NiT--------~-------------------~--~~e----m~~ra~~~------------------~~ 235 (412)
T TIGR03326 210 ---GERKEYLANIT--------A-------------------P--VRE----MERRAELV------------------AD 235 (412)
T ss_pred ---CCcceEEEEec--------C-------------------C--HHH----HHHHHHHH------------------HH
Confidence 45666665431 1 1 122 33333222 67
Q ss_pred cCCceeeccCcchHHHHHHHHHh--hCCCCCEEeEecccccHHHHHHHhCCCCCHHHHHHHHHHHHHHcCCCEEEec
Q psy15126 213 QGADFLMVKPALPYLDIISEVKS--RHPAYPLFVYQVSGEYAMLAFAAQAGALDLKRALMETLTCLRRGGADVIISY 287 (300)
Q Consensus 213 ~GADivmVkPsmm~ld~Ir~~~d--~~~~vpi~aY~vSgeY~~~r~Aa~~~~~n~~eal~E~~~~~~r~GAD~Ii~y 287 (300)
+|+..+||.|...=++.++.+.+ ++.++||+++-. ..|++-...+.|. .. -++-.|..+ +|||.+++-
T Consensus 236 ~G~~~~mv~~~~~G~~~l~~l~~~~~~~~l~ih~Hra--~~ga~~~~~~~Gi-s~--~vl~kl~RL--aGaD~~~~~ 305 (412)
T TIGR03326 236 LGGQYVMVDVVVCGWSALQYIRELTEDLGLAIHAHRA--MHAAFTRNPKHGI-SM--FALAKLYRL--IGVDQLHTG 305 (412)
T ss_pred hCCCeEEEEeeccchHHHHHHHHhhccCCeEEEEcCC--cccccccCCCCcC-cH--HHHHHHHHH--cCCCeeeeC
Confidence 99999999998665666777766 356899999855 4444332223444 22 224444444 899998764
No 21
>cd08210 RLP_RrRLP Ribulose bisphosphate carboxylase like proteins (RLPs) similar to R.rubrum RLP. RLP from Rhodospirillum rubrum plays a role in an uncharacterized sulfur salvage pathway and has been shown to catalyze a novel isomerization reaction that converts 5-methylthio-d-ribulose 1-phosphate to a 3:1 mixture of 1-methylthioxylulose 5-phosphate and 1-methylthioribulose 5-phosphate.
Probab=95.99 E-value=0.07 Score=52.40 Aligned_cols=137 Identities=24% Similarity=0.369 Sum_probs=88.4
Q ss_pred HHhHHHHHHHHHHHHHcCCCcccc--------CCCCcchHHHHHHHHhhCCCCCCcccccchhhhhcccchhhhhhhcCC
Q psy15126 61 EKTLKRLADISKAFSDAGAHIVAP--------SDMMDNRIHAIKQSLFTSRQSSTTGLLSYSAKFCSAFYGPFREAAGSA 132 (300)
Q Consensus 61 d~Tl~~l~~~A~~~A~aGad~vAP--------SdmMDgrv~air~aLd~~g~~~~v~ImsysaK~aS~~YGPfRda~gS~ 132 (300)
-.|.+.+++++..++..|+|.|-. ...+.-|+.+..+++++.+-. .
T Consensus 137 GL~~~~~a~~~~~~~~gGvD~IKdDe~l~~~~~~p~~eRv~~v~~av~~a~~e-T------------------------- 190 (364)
T cd08210 137 GLSAAELAELAYAFALGGIDIIKDDHGLADQPFAPFEERVKACQEAVAEANAE-T------------------------- 190 (364)
T ss_pred cCCHHHHHHHHHHHHhcCCCeeecCccccCccCCCHHHHHHHHHHHHHHHHhh-c-------------------------
Confidence 678999999999999999999843 566788888888888887652 1
Q ss_pred CCCCCcceeeCCCCCCceEEEEeecccCCCCCCccccccCCCcccchHhHHHHHHHHHhhhcccccCCCCCccccchhhh
Q psy15126 133 PTFGDRSCYQLPCGSKGLAIRAAVCLCGYTSHGHCAIFNEDGSIHYEKTLKRLADISKAFSDAVYVPNHNTDRFQARDVS 212 (300)
Q Consensus 133 ~~~gdr~~yQ~~~~~~~~ai~~dvclc~yt~hGHcgi~~~~g~i~nd~tl~~l~~~a~~~a~~~~~~~~n~~~~~~~Da~ 212 (300)
|.|+.|-.+-. + ..++.+++ ++.+ .+
T Consensus 191 ---G~~~~y~~Nit---------------------------a--~~~em~~r-a~~a---------------------~~ 216 (364)
T cd08210 191 ---GGRTLYAPNVT---------------------------G--PPTQLLER-ARFA---------------------KE 216 (364)
T ss_pred ---CCcceEEEecC---------------------------C--CHHHHHHH-HHHH---------------------HH
Confidence 44555554432 1 01122222 2221 57
Q ss_pred cCCceeeccCcchHHHHHHHHHhhCCC-CCEEeEecccccHHHHHHHhCCCCCHHHHHHHHHHHHHHcCCCEEE
Q psy15126 213 QGADFLMVKPALPYLDIISEVKSRHPA-YPLFVYQVSGEYAMLAFAAQAGALDLKRALMETLTCLRRGGADVII 285 (300)
Q Consensus 213 ~GADivmVkPsmm~ld~Ir~~~d~~~~-vpi~aY~vSgeY~~~r~Aa~~~~~n~~eal~E~~~~~~r~GAD~Ii 285 (300)
+||+.|||.|-...++.++.+.+.. . +||+++-. ..|++....+ + ++.. .+...+..+ +|||+++
T Consensus 217 ~Ga~~vMv~~~~~G~~~~~~l~~~~-~~l~i~aHra--~~ga~~~~~~-~-is~~-~~~~kl~Rl--aGad~~~ 282 (364)
T cd08210 217 AGAGGVLIAPGLTGLDTFRELAEDF-DFLPILAHPA--FAGAFVSSGD-G-ISHA-LLFGTLFRL--AGADAVI 282 (364)
T ss_pred cCCCEEEeecccchHHHHHHHHhcC-CCcEEEEccc--cccccccCCC-c-ccHH-HHHHHHHHH--hCCCEEE
Confidence 9999999999988888888887764 6 99999944 2222221111 1 2221 234444444 7999864
No 22
>cd08209 RLP_DK-MTP-1-P-enolase 2,3-diketo-5-methylthiopentyl-1-phosphate enolase. Ribulose bisphosphate carboxylase like proteins (RLPs) similar to B. subtilis YkrW protein, have been identified as 2,3-diketo-5-methylthiopentyl-1-phosphate enolases. They catalyze the tautomerization of 2,3-diketo-5-methylthiopentane 1-phosphate (DK-MTP 1-P). This is an important step in the methionine salvage pathway in which 5-methylthio-D-ribose (MTR) derived from 5'-methylthioadenosine is converted to methionine.
Probab=95.85 E-value=0.039 Score=54.90 Aligned_cols=139 Identities=23% Similarity=0.287 Sum_probs=87.2
Q ss_pred HhHHHHHHHHHHHHHcCCCccc--------cCCCCcchHHHHHHHHhhCCCCCCcccccchhhhhcccchhhhhhhcCCC
Q psy15126 62 KTLKRLADISKAFSDAGAHIVA--------PSDMMDNRIHAIKQSLFTSRQSSTTGLLSYSAKFCSAFYGPFREAAGSAP 133 (300)
Q Consensus 62 ~Tl~~l~~~A~~~A~aGad~vA--------PSdmMDgrv~air~aLd~~g~~~~v~ImsysaK~aS~~YGPfRda~gS~~ 133 (300)
.|.+.+++++..++..|+|+|= |-.-+.-||.++.+++++..-. .
T Consensus 137 lsp~~~a~~~y~~~~GGvD~IKDDE~l~~q~~~p~~eRv~a~~~a~~~a~~e-T-------------------------- 189 (391)
T cd08209 137 LDLDDLAEQLREQALGGVDLIKDDEILFDNPLAPALERIRACRPVLQEVYEQ-T-------------------------- 189 (391)
T ss_pred CCHHHHHHHHHHHHhCCCCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHh-h--------------------------
Confidence 6899999999999999999873 3555677888888777776541 1
Q ss_pred CCCCcceeeCCCCCCceEEEEeecccCCCCCCccccccCCCcccchHhHHHHHHHHHhhhcccccCCCCCccccchhhhc
Q psy15126 134 TFGDRSCYQLPCGSKGLAIRAAVCLCGYTSHGHCAIFNEDGSIHYEKTLKRLADISKAFSDAVYVPNHNTDRFQARDVSQ 213 (300)
Q Consensus 134 ~~gdr~~yQ~~~~~~~~ai~~dvclc~yt~hGHcgi~~~~g~i~nd~tl~~l~~~a~~~a~~~~~~~~n~~~~~~~Da~~ 213 (300)
|.|+.|..+-. |. -|+..++ +..- .++
T Consensus 190 --G~~~~ya~NiT---------------------------~~--~~em~~r----a~~~------------------~~~ 216 (391)
T cd08209 190 --GRRTLYAVNLT---------------------------GP--VFTLKEK----ARRL------------------VEA 216 (391)
T ss_pred --CCcceEEEEcC---------------------------CC--HHHHHHH----HHHH------------------HHh
Confidence 55777766532 11 1333333 2221 689
Q ss_pred CCceeeccCcchHHHHHHHHHhh-CCCCCEEeEecccccHHHHHHHhCCCCCHHHHHHHHHHHHHHcCCCEEEe
Q psy15126 214 GADFLMVKPALPYLDIISEVKSR-HPAYPLFVYQVSGEYAMLAFAAQAGALDLKRALMETLTCLRRGGADVIIS 286 (300)
Q Consensus 214 GADivmVkPsmm~ld~Ir~~~d~-~~~vpi~aY~vSgeY~~~r~Aa~~~~~n~~eal~E~~~~~~r~GAD~Ii~ 286 (300)
|++.+||.|...=++.++.+.+. ..++||+++-. ..|++-...+.|+ .. ..++-.|..+ +|||.+++
T Consensus 217 G~~~~mv~~~~~G~~~l~~l~~~~~~~lpIhaHra--~~ga~~~~~~~Gi-s~-~~~l~kl~RL--aGaD~~~~ 284 (391)
T cd08209 217 GANALLFNVFAYGLDVLEALASDPEINVPIFAHPA--FAGALYGSPDYGI-AA-SVLLGTLMRL--AGADAVLF 284 (391)
T ss_pred CCCEEEEeccccchHHHHHHHhcCcCCcEEEecCC--cccccccCCCCCC-cH-HHHHHHHHHH--cCCCcccc
Confidence 99999999975546666666653 34899998855 3333222222333 11 1234444444 78888765
No 23
>cd08207 RLP_NonPhot Ribulose bisphosphate carboxylase like proteins from nonphototrophic bacteria. Ribulose bisphosphate carboxylase (Rubisco) plays an important role in the Calvin reductive pentose phosphate pathway. It catalyzes the primary CO2 fixation step. Rubisco is activated by carbamylation of an active site lysine, stabilized by a divalent cation, which then catalyzes the proton abstraction from the substrate ribulose 1,5 bisphosphate (RuBP) and leads to the formation of two molecules of 3-phosphoglycerate. Members of the Rubisco family can be divided into 4 subgroups, Form I-IV, which differ in their taxonomic distribution and subunit composition. Form I-III have Rubisco activity, while Form IV, also called Rubisco-like proteins (RLP), are missing critical active site residues and therefore do not catalyze CO2 fixation. They are believed to utilize a related enzymatic mechanism, but have divergent functions. The specific function of this subgroup is unknown.
Probab=95.61 E-value=0.062 Score=53.74 Aligned_cols=138 Identities=19% Similarity=0.294 Sum_probs=89.4
Q ss_pred HHhHHHHHHHHHHHHHcCCCccc--------cCCCCcchHHHHHHHHhhCCCCCCcccccchhhhhcccchhhhhhhcCC
Q psy15126 61 EKTLKRLADISKAFSDAGAHIVA--------PSDMMDNRIHAIKQSLFTSRQSSTTGLLSYSAKFCSAFYGPFREAAGSA 132 (300)
Q Consensus 61 d~Tl~~l~~~A~~~A~aGad~vA--------PSdmMDgrv~air~aLd~~g~~~~v~ImsysaK~aS~~YGPfRda~gS~ 132 (300)
=.|.+.+++++..++..|+|+|= |-.-+..||.++.+++++..-. .
T Consensus 155 Glsp~~~a~~~y~~~~GGvD~IKDDE~l~~q~~~p~~eRv~~~~~a~~~a~~e-T------------------------- 208 (406)
T cd08207 155 GLTPEETAALVRQLAAAGIDFIKDDELLANPPYSPLDERVRAVMRVINDHAQR-T------------------------- 208 (406)
T ss_pred CCCHHHHHHHHHHHHhCCCCcccccccCCCCCCCcHHHHHHHHHHHHHHHHHh-h-------------------------
Confidence 36899999999999999999873 2455777888888888776542 1
Q ss_pred CCCCCcceeeCCCCCCceEEEEeecccCCCCCCccccccCCCcccchHhHHHHHHHHHhhhcccccCCCCCccccchhhh
Q psy15126 133 PTFGDRSCYQLPCGSKGLAIRAAVCLCGYTSHGHCAIFNEDGSIHYEKTLKRLADISKAFSDAVYVPNHNTDRFQARDVS 212 (300)
Q Consensus 133 ~~~gdr~~yQ~~~~~~~~ai~~dvclc~yt~hGHcgi~~~~g~i~nd~tl~~l~~~a~~~a~~~~~~~~n~~~~~~~Da~ 212 (300)
|.++.|..+-- + + .+.+.+.+.-. ++
T Consensus 209 ---G~~~~y~~NiT--------~---------------------~----~~em~~ra~~~------------------~~ 234 (406)
T cd08207 209 ---GRKVMYAFNIT--------D---------------------D----IDEMRRNHDLV------------------VE 234 (406)
T ss_pred ---CCcceEEEecC--------C---------------------C----HHHHHHHHHHH------------------HH
Confidence 55666665532 0 0 22233333332 68
Q ss_pred cCCceeeccCcchHHHHHHHHHhhCCCCCEEeEecccccHHHHHHHhCCCCCHHHHHHHHHHHHHHcCCCEEEe
Q psy15126 213 QGADFLMVKPALPYLDIISEVKSRHPAYPLFVYQVSGEYAMLAFAAQAGALDLKRALMETLTCLRRGGADVIIS 286 (300)
Q Consensus 213 ~GADivmVkPsmm~ld~Ir~~~d~~~~vpi~aY~vSgeY~~~r~Aa~~~~~n~~eal~E~~~~~~r~GAD~Ii~ 286 (300)
+|++++||.|...=++.++.+.+. +++||+++-. ..|++-...+.|. .. .+ +-.|..+ +|||.+++
T Consensus 235 ~G~~~~mv~~~~~G~~~l~~l~~~-~~l~IhaHra--~~ga~~r~p~~Gi-s~-~v-l~kl~RL--aGaD~~~~ 300 (406)
T cd08207 235 AGGTCVMVSLNSVGLSGLAALRRH-SQLPIHGHRN--GWGMLTRSPALGI-SF-QA-YQKLWRL--AGVDHLHV 300 (406)
T ss_pred hCCCeEEEeccccchHHHHHHHhc-CCceEEECCC--cceecccCCCCCC-cH-HH-HHHHHHH--cCCCcccc
Confidence 999999999986656667776664 6999998855 3333322223343 22 22 3344444 89999887
No 24
>PRK04208 rbcL ribulose bisophosphate carboxylase; Reviewed
Probab=95.58 E-value=0.048 Score=55.50 Aligned_cols=140 Identities=14% Similarity=0.187 Sum_probs=89.6
Q ss_pred HHhHHHHHHHHHHHHHcCCCccc--------cCCCCcchHHHHHHHHhhCCCCCCcccccchhhhhcccchhhhhhhcCC
Q psy15126 61 EKTLKRLADISKAFSDAGAHIVA--------PSDMMDNRIHAIKQSLFTSRQSSTTGLLSYSAKFCSAFYGPFREAAGSA 132 (300)
Q Consensus 61 d~Tl~~l~~~A~~~A~aGad~vA--------PSdmMDgrv~air~aLd~~g~~~~v~ImsysaK~aS~~YGPfRda~gS~ 132 (300)
=.|.+.+++++..++..|+|+|= |-.-+..||.+..+++++..-. .
T Consensus 172 GLsp~~~a~~~y~~~~GGvD~IKDDE~l~~q~f~p~~~Rv~~~~~a~~~a~~e-T------------------------- 225 (468)
T PRK04208 172 GLSAKNYGRVVYEALRGGLDFTKDDENLNSQPFNRWRDRFLFVMEAIDKAEAE-T------------------------- 225 (468)
T ss_pred CCCHHHHHHHHHHHHhcCCceeeCCCCCCCCCCccHHHHHHHHHHHHHHHHHh-h-------------------------
Confidence 36899999999999999999873 3455677777777777765441 1
Q ss_pred CCCCCcceeeCCCCCCceEEEEeecccCCCCCCccccccCCCcccchHhHHHHHHHHHhhhcccccCCCCCccccchhhh
Q psy15126 133 PTFGDRSCYQLPCGSKGLAIRAAVCLCGYTSHGHCAIFNEDGSIHYEKTLKRLADISKAFSDAVYVPNHNTDRFQARDVS 212 (300)
Q Consensus 133 ~~~gdr~~yQ~~~~~~~~ai~~dvclc~yt~hGHcgi~~~~g~i~nd~tl~~l~~~a~~~a~~~~~~~~n~~~~~~~Da~ 212 (300)
|.++.|.++-- ..|.+.+.+.+.-. .+
T Consensus 226 ---G~~k~y~~NiT--------------------------------~~~~~em~~ra~~~------------------~e 252 (468)
T PRK04208 226 ---GERKGHYLNVT--------------------------------APTMEEMYKRAEFA------------------KE 252 (468)
T ss_pred ---CCcceEEEecC--------------------------------CCCHHHHHHHHHHH------------------HH
Confidence 55666665421 01223333333332 67
Q ss_pred cCCceeeccCcchHHHHHHHHHh--hCCCCCEEeEecccccHHHHHHHhCCCCCHHHHHHHHHHHHHHcCCCEEEe
Q psy15126 213 QGADFLMVKPALPYLDIISEVKS--RHPAYPLFVYQVSGEYAMLAFAAQAGALDLKRALMETLTCLRRGGADVIIS 286 (300)
Q Consensus 213 ~GADivmVkPsmm~ld~Ir~~~d--~~~~vpi~aY~vSgeY~~~r~Aa~~~~~n~~eal~E~~~~~~r~GAD~Ii~ 286 (300)
+|+.++||.|-..=++.++.+.+ +++++||+++-+ ..|++-...+.|. .. .+ +-.|..+ +|||.|++
T Consensus 253 ~G~~~~mv~~~~~G~~~l~~l~~~~~~~~l~IhaHrA--~~ga~~r~~~~Gi-s~-~v-l~Kl~RL--aGaD~ih~ 321 (468)
T PRK04208 253 LGSPIVMIDVVTAGWTALQSLREWCRDNGLALHAHRA--MHAAFTRNPNHGI-SF-RV-LAKLLRL--IGVDHLHT 321 (468)
T ss_pred hCCCEEEEeccccccHHHHHHHHhhhcCCcEEEecCC--cccccccCcCCCC-CH-HH-HHHHHHH--cCCCcccc
Confidence 99999999998654555666665 356999999965 4444332223454 22 22 4444444 89999886
No 25
>cd08206 RuBisCO_large_I_II_III Ribulose bisphosphate carboxylase large chain, Form I,II,III. Ribulose bisphosphate carboxylase (Rubisco) plays an important role in the Calvin reductive pentose phosphate pathway. It catalyzes the primary CO2 fixation step. Rubisco is activated by carbamylation of an active site lysine, stabilized by a divalent cation, which then catalyzes the proton abstraction from the substrate ribulose 1,5 bisphosphate (RuBP) and leads to the formation of two molecules of 3-phosphoglycerate. Members of the Rubisco family can be divided into 4 subgroups, Form I-IV, which differ in their taxonomic distribution and subunit composition. Form I-III have Rubisco activity, while Form IV, also called Rubico-like proteins (RLP), are missing critical active site residues.
Probab=95.58 E-value=0.055 Score=54.24 Aligned_cols=140 Identities=17% Similarity=0.175 Sum_probs=90.7
Q ss_pred HHhHHHHHHHHHHHHHcCCCccc--------cCCCCcchHHHHHHHHhhCCCCCCcccccchhhhhcccchhhhhhhcCC
Q psy15126 61 EKTLKRLADISKAFSDAGAHIVA--------PSDMMDNRIHAIKQSLFTSRQSSTTGLLSYSAKFCSAFYGPFREAAGSA 132 (300)
Q Consensus 61 d~Tl~~l~~~A~~~A~aGad~vA--------PSdmMDgrv~air~aLd~~g~~~~v~ImsysaK~aS~~YGPfRda~gS~ 132 (300)
=.|.+.+++++..++..|+|+|= |-.-+.-||.+..+++++..-. .
T Consensus 144 Glsp~~~a~~~y~~~~GGiD~IKDDE~l~~q~~~p~~eRv~~~~~a~~~a~~e-T------------------------- 197 (414)
T cd08206 144 GLSPKEYARVVYEALRGGLDFVKDDENQNSQPFMRFEDRILFVAEAMDKAEAE-T------------------------- 197 (414)
T ss_pred CCCHHHHHHHHHHHHhcCCcccccCccCCCCCCCcHHHHHHHHHHHHHHHHHh-h-------------------------
Confidence 36899999999999999999873 3455667777777777775541 1
Q ss_pred CCCCCcceeeCCCCCCceEEEEeecccCCCCCCccccccCCCcccchHhHHHHHHHHHhhhcccccCCCCCccccchhhh
Q psy15126 133 PTFGDRSCYQLPCGSKGLAIRAAVCLCGYTSHGHCAIFNEDGSIHYEKTLKRLADISKAFSDAVYVPNHNTDRFQARDVS 212 (300)
Q Consensus 133 ~~~gdr~~yQ~~~~~~~~ai~~dvclc~yt~hGHcgi~~~~g~i~nd~tl~~l~~~a~~~a~~~~~~~~n~~~~~~~Da~ 212 (300)
|.++.|.++-.. .|.+.+.+.+... .+
T Consensus 198 ---G~~~~y~~NiT~--------------------------------~~~~em~~ra~~~------------------~~ 224 (414)
T cd08206 198 ---GEAKGHYLNITA--------------------------------DTPEEMIKRAEFA------------------KE 224 (414)
T ss_pred ---CCcceEEeccCC--------------------------------CcHHHHHHHHHHH------------------HH
Confidence 556777665321 1233334443332 68
Q ss_pred cCCceeeccCcchHHHHHHHHHhhC--CCCCEEeEecccccHHHHHHHhCCCCCHHHHHHHHHHHHHHcCCCEEEe
Q psy15126 213 QGADFLMVKPALPYLDIISEVKSRH--PAYPLFVYQVSGEYAMLAFAAQAGALDLKRALMETLTCLRRGGADVIIS 286 (300)
Q Consensus 213 ~GADivmVkPsmm~ld~Ir~~~d~~--~~vpi~aY~vSgeY~~~r~Aa~~~~~n~~eal~E~~~~~~r~GAD~Ii~ 286 (300)
+|+.++||.|...=++.++.+.+.+ .++||+++-+ ..|++-...+.|. +. .+ +-.|..+ +|||.|++
T Consensus 225 ~G~~~~mv~~~~~G~~~l~~l~~~~~~~~l~ih~HrA--~~ga~~~~~~~Gi-s~-~v-l~kl~RL--aGaD~ih~ 293 (414)
T cd08206 225 LGSVIVMVDGVTAGWTAIQSARRWCPDNGLALHAHRA--GHAAFTRQKNHGI-SM-RV-LAKLARL--IGVDHIHT 293 (414)
T ss_pred hCCcEEEEeeecccHHHHHHHHHhccccCeEEEEccc--cceecccCCCCcC-cH-HH-HHHHHHH--cCCCcccc
Confidence 9999999999866566677777653 3699999855 3333332233444 33 22 3344444 89999886
No 26
>cd04726 KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxylase (KGPDC) and D-arabino-3-hexulose-6-phosphate synthase (HPS). KGPDC catalyzes the formation of L-xylulose 5-phosphate and carbon dioxide from 3-keto-L-gulonate 6-phosphate as part of the anaerobic pathway for L-ascorbate utilization in some eubacteria. HPS catalyzes the formation of D-arabino-3-hexulose-6-phosphate from D-ribulose 5-phosphate and formaldehyde in microorganisms that can use formaldehyde as a carbon source. Both catalyze reactions that involve the Mg2+-assisted formation and stabilization of 1,2-enediolate reaction intermediates.
Probab=95.49 E-value=0.29 Score=42.19 Aligned_cols=63 Identities=19% Similarity=0.191 Sum_probs=41.9
Q ss_pred HHHHHHHHHhCCCcEEEeeecCCCCCCCCcceeeCCCCceecHHhHHHHHHHHHHHHHcCCCccccCCCC-cchHHHHHH
Q psy15126 19 FQVIPMIRKQFPSLTIACDVCLCGYTSHGHCAIFNEDGSIHYEKTLKRLADISKAFSDAGAHIVAPSDMM-DNRIHAIKQ 97 (300)
Q Consensus 19 ~~~i~~ik~~~p~l~i~~Dvclc~yt~hGHcgi~~~~g~i~nd~Tl~~l~~~A~~~A~aGad~vAPSdmM-Dgrv~air~ 97 (300)
.+.|+.+|+.+|++.|++|.-+..+ + | .++..++++|++.+...... +.....+.+
T Consensus 41 ~~~i~~i~~~~~~~~i~~~~~v~~~------------~---~--------~~~~~~~~aGad~i~~h~~~~~~~~~~~i~ 97 (202)
T cd04726 41 MEAVRALREAFPDKIIVADLKTADA------------G---A--------LEAEMAFKAGADIVTVLGAAPLSTIKKAVK 97 (202)
T ss_pred HHHHHHHHHHCCCCEEEEEEEeccc------------c---H--------HHHHHHHhcCCCEEEEEeeCCHHHHHHHHH
Confidence 5789999999999988877655311 1 1 24577889999999853322 233455555
Q ss_pred HHhhCCC
Q psy15126 98 SLFTSRQ 104 (300)
Q Consensus 98 aLd~~g~ 104 (300)
...+.|.
T Consensus 98 ~~~~~g~ 104 (202)
T cd04726 98 AAKKYGK 104 (202)
T ss_pred HHHHcCC
Confidence 5655666
No 27
>TIGR00222 panB 3-methyl-2-oxobutanoate hydroxymethyltransferase. Members of this family are 3-methyl-2-oxobutanoate hydroxymethyltransferase, the first enzyme of the pantothenate biosynthesis pathway. An alternate name is ketopantoate hydroxymethyltransferase.
Probab=95.33 E-value=0.74 Score=43.89 Aligned_cols=140 Identities=17% Similarity=0.207 Sum_probs=88.6
Q ss_pred HHHHHHHHHHhCCCcEEEeeecCCCCCCCCcceeeCCCCceecHHhHHHHHHHHHHHHH-cCCCccccCCCCcchHHHHH
Q psy15126 18 LFQVIPMIRKQFPSLTIACDVCLCGYTSHGHCAIFNEDGSIHYEKTLKRLADISKAFSD-AGAHIVAPSDMMDNRIHAIK 96 (300)
Q Consensus 18 ~~~~i~~ik~~~p~l~i~~Dvclc~yt~hGHcgi~~~~g~i~nd~Tl~~l~~~A~~~A~-aGad~vAPSdmMDgrv~air 96 (300)
+..-.+++++..|+-.|++|+ ||++.+ +.+..++-|..+.+ +||+.|=..+- ..+...-
T Consensus 63 m~~h~~aV~rg~~~~~vv~Dm---Pf~sy~---------------~~e~a~~na~rl~~eaGa~aVkiEgg--~~~~~~i 122 (263)
T TIGR00222 63 MIYHTAAVKRGAPNCLIVTDL---PFMSYA---------------TPEQALKNAARVMQETGANAVKLEGG--EWLVETV 122 (263)
T ss_pred HHHHHHHHHhhCCCceEEeCC---CcCCCC---------------CHHHHHHHHHHHHHHhCCeEEEEcCc--HhHHHHH
Confidence 345677888889999999998 554221 13344555556555 99999998764 2333445
Q ss_pred HHHhhCCCCCCcccccchhhhhcccchhhhhhhcCCCCCCCcceeeCCCCCCceEEEEeecccCCCCCCccccccCCCcc
Q psy15126 97 QSLFTSRQSSTTGLLSYSAKFCSAFYGPFREAAGSAPTFGDRSCYQLPCGSKGLAIRAAVCLCGYTSHGHCAIFNEDGSI 176 (300)
Q Consensus 97 ~aLd~~g~~~~v~ImsysaK~aS~~YGPfRda~gS~~~~gdr~~yQ~~~~~~~~ai~~dvclc~yt~hGHcgi~~~~g~i 176 (300)
+.|...|. ++|.+ +|=.|+.- +.+ -|+.-. |
T Consensus 123 ~~l~~~gI----pV~gH---------------iGltPq~a----------------~~~-----------ggy~~q-g-- 153 (263)
T TIGR00222 123 QMLTERGV----PVVGH---------------LGLTPQSV----------------NIL-----------GGYKVQ-G-- 153 (263)
T ss_pred HHHHHCCC----CEEEe---------------cCCCceeE----------------eec-----------CCeeec-C--
Confidence 88888888 35533 23333310 000 000000 1
Q ss_pred cchHhHHHHHHHHHhhhcccccCCCCCccccchhhhcCCceeeccCcchHHHHHHHHHhhCCCCCEEeEec
Q psy15126 177 HYEKTLKRLADISKAFSDAVYVPNHNTDRFQARDVSQGADFLMVKPALPYLDIISEVKSRHPAYPLFVYQV 247 (300)
Q Consensus 177 ~nd~tl~~l~~~a~~~a~~~~~~~~n~~~~~~~Da~~GADivmVkPsmm~ld~Ir~~~d~~~~vpi~aY~v 247 (300)
..+...+.+.+.|+++ .++|||.| |-|..+ -+.++++-++. ++|+....+
T Consensus 154 rt~~~a~~~i~~A~a~------------------e~AGA~~i-vlE~vp-~~~a~~It~~l-~iP~iGIGa 203 (263)
T TIGR00222 154 KDEEAAKKLLEDALAL------------------EEAGAQLL-VLECVP-VELAAKITEAL-AIPVIGIGA 203 (263)
T ss_pred CCHHHHHHHHHHHHHH------------------HHcCCCEE-EEcCCc-HHHHHHHHHhC-CCCEEeecc
Confidence 1234467888888888 79999998 667777 58899998886 699987644
No 28
>PRK05718 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=95.32 E-value=0.058 Score=49.26 Aligned_cols=35 Identities=11% Similarity=0.149 Sum_probs=28.5
Q ss_pred hhcCCceeeccCcc-hH-HHHHHHHHhhCCCCCEEeE
Q psy15126 211 VSQGADFLMVKPAL-PY-LDIISEVKSRHPAYPLFVY 245 (300)
Q Consensus 211 a~~GADivmVkPsm-m~-ld~Ir~~~d~~~~vpi~aY 245 (300)
.+.|||+|=+-|+. .- .+.|+.++.-||++|+|+=
T Consensus 125 ~~~Ga~~vKlFPa~~~gg~~~lk~l~~p~p~~~~~pt 161 (212)
T PRK05718 125 MELGLRTFKFFPAEASGGVKMLKALAGPFPDVRFCPT 161 (212)
T ss_pred HHCCCCEEEEccchhccCHHHHHHHhccCCCCeEEEe
Confidence 68999999999984 33 7788888877999999954
No 29
>cd08213 RuBisCO_large_III Ribulose bisphosphate carboxylase large chain, Form III. Ribulose bisphosphate carboxylase (Rubisco) plays an important role in the Calvin reductive pentose phosphate pathway. It catalyzes the primary CO2 fixation step. Rubisco is activated by carbamylation of an active site lysine, stabilized by a divalent cation, which then catalyzes the proton abstraction from the substrate ribulose 1,5 bisphosphate (RuBP) and leads to the formation of two molecules of 3-phosphoglycerate. Members of the Rubisco family can be divided into 4 subgroups, Form I-IV , which differ in their taxonomic distribution and subunit composition. Form III is only found in archaea and forms large subunit oligomers (dimers or decamers) that do not include small subunits.
Probab=95.07 E-value=0.11 Score=52.22 Aligned_cols=139 Identities=13% Similarity=0.199 Sum_probs=88.4
Q ss_pred HHhHHHHHHHHHHHHHcCCCccc--------cCCCCcchHHHHHHHHhhCCCCCCcccccchhhhhcccchhhhhhhcCC
Q psy15126 61 EKTLKRLADISKAFSDAGAHIVA--------PSDMMDNRIHAIKQSLFTSRQSSTTGLLSYSAKFCSAFYGPFREAAGSA 132 (300)
Q Consensus 61 d~Tl~~l~~~A~~~A~aGad~vA--------PSdmMDgrv~air~aLd~~g~~~~v~ImsysaK~aS~~YGPfRda~gS~ 132 (300)
=.|.+.+++++..++..|+|+|= |-.-+..|+.+..+++++..-. .
T Consensus 143 Glsp~~~a~~~y~~~~GGvD~iKDDE~l~~q~~~p~~~Rv~~~~~a~~~a~~e-T------------------------- 196 (412)
T cd08213 143 GLSPEEHAEVAYEALVGGVDLVKDDENLTSQPFNRFEERAKESLKARDKAEAE-T------------------------- 196 (412)
T ss_pred CCCHHHHHHHHHHHHhcCCcccccCccCCCCCCCCHHHHHHHHHHHHHHHHHh-h-------------------------
Confidence 36899999999999999999873 3555677888887777776542 1
Q ss_pred CCCCCcceeeCCCCCCceEEEEeecccCCCCCCccccccCCCcccchHhHHHHHHHHHhhhcccccCCCCCccccchhhh
Q psy15126 133 PTFGDRSCYQLPCGSKGLAIRAAVCLCGYTSHGHCAIFNEDGSIHYEKTLKRLADISKAFSDAVYVPNHNTDRFQARDVS 212 (300)
Q Consensus 133 ~~~gdr~~yQ~~~~~~~~ai~~dvclc~yt~hGHcgi~~~~g~i~nd~tl~~l~~~a~~~a~~~~~~~~n~~~~~~~Da~ 212 (300)
|.++.|.++-- + + .+.+.+.+.-- .+
T Consensus 197 ---G~~~~y~~NiT--------~---------------------~----~~em~~ra~~a------------------~e 222 (412)
T cd08213 197 ---GERKAYLANIT--------A---------------------P----VREMERRAELV------------------AD 222 (412)
T ss_pred ---CCcceEEEEec--------C---------------------C----HHHHHHHHHHH------------------HH
Confidence 55666665531 1 0 12223333222 68
Q ss_pred cCCceeeccCcchHHHHHHHHHhh--CCCCCEEeEecccccHHHHHHHhCCCCCHHHHHHHHHHHHHHcCCCEEEe
Q psy15126 213 QGADFLMVKPALPYLDIISEVKSR--HPAYPLFVYQVSGEYAMLAFAAQAGALDLKRALMETLTCLRRGGADVIIS 286 (300)
Q Consensus 213 ~GADivmVkPsmm~ld~Ir~~~d~--~~~vpi~aY~vSgeY~~~r~Aa~~~~~n~~eal~E~~~~~~r~GAD~Ii~ 286 (300)
+|++++||.|-..=++.++.+.+. ..++||+++-. ..|++-...+.|+ +.. ++-.+..+ +|||.|++
T Consensus 223 ~G~~~~mv~~~~~G~~~l~~l~~~~~~~~l~ihaHra--~~ga~~r~~~~Gi-s~~--~l~kl~RL--aGaD~ih~ 291 (412)
T cd08213 223 LGGKYVMIDVVVAGWSALQYLRDLAEDYGLAIHAHRA--MHAAFTRNPRHGI-SML--VLAKLYRL--IGVDQLHI 291 (412)
T ss_pred hCCCeEEeeccccChHHHHHHHHhccccCeEEEECCC--cceecccCCcCcC-cHH--HHHHHHHH--cCCCcccc
Confidence 999999999975545556666553 34699999855 4443332233444 331 44444444 89999886
No 30
>cd06556 ICL_KPHMT Members of the ICL/PEPM_KPHMT enzyme superfamily catalyze the formation and cleavage of either P-C or C-C bonds. Typical members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), 2-methylisocitrate lyase (MICL), and ketopantoate hydroxymethyltransferase (KPHMT).
Probab=95.05 E-value=0.45 Score=44.30 Aligned_cols=138 Identities=17% Similarity=0.197 Sum_probs=83.0
Q ss_pred HHHHHHHHHHhCCCcEEEeeecCCCCCCCCcceeeCCCCceecHHhHHHHHHHHHHHHHcCCCccccCCC--CcchHHHH
Q psy15126 18 LFQVIPMIRKQFPSLTIACDVCLCGYTSHGHCAIFNEDGSIHYEKTLKRLADISKAFSDAGAHIVAPSDM--MDNRIHAI 95 (300)
Q Consensus 18 ~~~~i~~ik~~~p~l~i~~Dvclc~yt~hGHcgi~~~~g~i~nd~Tl~~l~~~A~~~A~aGad~vAPSdm--MDgrv~ai 95 (300)
+...++.|.+..|.+-|++|.= .|.-. +.+...+.+..+.++|++.|-.-|. |-.++.++
T Consensus 60 m~~~~~~I~r~~~~~pviaD~~---------------~G~g~---~~~~~~~~~~~l~~aGa~gv~iED~~~~~~~i~ai 121 (240)
T cd06556 60 VPYHVRAVRRGAPLALIVADLP---------------FGAYG---APTAAFELAKTFMRAGAAGVKIEGGEWHIETLQML 121 (240)
T ss_pred HHHHHHHHHhhCCCCCEEEeCC---------------CCCCc---CHHHHHHHHHHHHHcCCcEEEEcCcHHHHHHHHHH
Confidence 4456777788888888888852 23222 3345677788888999999988775 33334443
Q ss_pred HHHHhhCCCCCCcccccchhhhhcccchhhhhhhcCCCCCCCcceeeCCCCCCceEEEEeecccCCCCCCccccccCCCc
Q psy15126 96 KQSLFTSRQSSTTGLLSYSAKFCSAFYGPFREAAGSAPTFGDRSCYQLPCGSKGLAIRAAVCLCGYTSHGHCAIFNEDGS 175 (300)
Q Consensus 96 r~aLd~~g~~~~v~ImsysaK~aS~~YGPfRda~gS~~~~gdr~~yQ~~~~~~~~ai~~dvclc~yt~hGHcgi~~~~g~ 175 (300)
+ +.++ .||++.- ..|+. --++.|+-+ .
T Consensus 122 ~----~a~i----~ViaRtd---------------~~pq~------------------------~~~~gg~~~------~ 148 (240)
T cd06556 122 T----AAAV----PVIAHTG---------------LTPQS------------------------VNTSGGDEG------Q 148 (240)
T ss_pred H----HcCC----eEEEEeC---------------Cchhh------------------------hhccCCcee------e
Confidence 3 3344 4553311 11110 000111111 1
Q ss_pred ccchHhHHHHHHHHHhhhcccccCCCCCccccchhhhcCCceeeccCcchHHHHHHHHHhhCCCCCEEeEec
Q psy15126 176 IHYEKTLKRLADISKAFSDAVYVPNHNTDRFQARDVSQGADFLMVKPALPYLDIISEVKSRHPAYPLFVYQV 247 (300)
Q Consensus 176 i~nd~tl~~l~~~a~~~a~~~~~~~~n~~~~~~~Da~~GADivmVkPsmm~ld~Ir~~~d~~~~vpi~aY~v 247 (300)
......++.+.+.++++ .++|||+|.+ |+. -.+.++++-++. ++|+.....
T Consensus 149 ~~~~~~~~~ai~Ra~ay------------------~~AGAd~i~~-e~~-~~e~~~~i~~~~-~~P~~~~ga 199 (240)
T cd06556 149 YRGDEAGEQLIADALAY------------------APAGADLIVM-ECV-PVELAKQITEAL-AIPLAGIGA 199 (240)
T ss_pred ccCHHHHHHHHHHHHHH------------------HHcCCCEEEE-cCC-CHHHHHHHHHhC-CCCEEEEec
Confidence 11233466677778888 7999999965 455 788888888874 799988755
No 31
>PRK09549 mtnW 2,3-diketo-5-methylthiopentyl-1-phosphate enolase; Reviewed
Probab=95.02 E-value=0.12 Score=51.83 Aligned_cols=140 Identities=19% Similarity=0.212 Sum_probs=89.1
Q ss_pred HHhHHHHHHHHHHHHHcCCCccc--------cCCCCcchHHHHHHHHhhCCCCCCcccccchhhhhcccchhhhhhhcCC
Q psy15126 61 EKTLKRLADISKAFSDAGAHIVA--------PSDMMDNRIHAIKQSLFTSRQSSTTGLLSYSAKFCSAFYGPFREAAGSA 132 (300)
Q Consensus 61 d~Tl~~l~~~A~~~A~aGad~vA--------PSdmMDgrv~air~aLd~~g~~~~v~ImsysaK~aS~~YGPfRda~gS~ 132 (300)
=.|.+.+++++..++..|+|+|= |..-+.-||.+..+++++..-. .
T Consensus 146 GLsp~~~a~~~y~~~~GGvD~IKDDE~l~~q~~~p~~eRv~~~~~a~~~a~~e-T------------------------- 199 (407)
T PRK09549 146 GRDLDYLKEQLRDQALGGVDLVKDDEILFENALTPFEKRIVAGKEVLQEVYET-T------------------------- 199 (407)
T ss_pred CCCHHHHHHHHHHHHhcCCcceecCcCCCCCCCcCHHHHHHHHHHHHHHHHHh-h-------------------------
Confidence 46899999999999999999873 4566777888888888776552 2
Q ss_pred CCCCCcceeeCCCCCCceEEEEeecccCCCCCCccccccCCCcccchHhHHHHHHHHHhhhcccccCCCCCccccchhhh
Q psy15126 133 PTFGDRSCYQLPCGSKGLAIRAAVCLCGYTSHGHCAIFNEDGSIHYEKTLKRLADISKAFSDAVYVPNHNTDRFQARDVS 212 (300)
Q Consensus 133 ~~~gdr~~yQ~~~~~~~~ai~~dvclc~yt~hGHcgi~~~~g~i~nd~tl~~l~~~a~~~a~~~~~~~~n~~~~~~~Da~ 212 (300)
|.++.|.++-. +. -++.. +.+... .+
T Consensus 200 ---G~~~~y~~NiT---------------------------~~--~~em~----~ra~~a------------------~~ 225 (407)
T PRK09549 200 ---GHKTLYAVNLT---------------------------GR--TFELK----EKAKRA------------------AE 225 (407)
T ss_pred ---CCcceEEEecC---------------------------CC--HHHHH----HHHHHH------------------HH
Confidence 56777776532 11 12222 222221 57
Q ss_pred cCCceeeccCcchHHHHHHHHHhh-CCCCCEEeEecccccHHHHHHHhCCCCCHHHHHHHHHHHHHHcCCCEEEe
Q psy15126 213 QGADFLMVKPALPYLDIISEVKSR-HPAYPLFVYQVSGEYAMLAFAAQAGALDLKRALMETLTCLRRGGADVIIS 286 (300)
Q Consensus 213 ~GADivmVkPsmm~ld~Ir~~~d~-~~~vpi~aY~vSgeY~~~r~Aa~~~~~n~~eal~E~~~~~~r~GAD~Ii~ 286 (300)
+|+..+||.|...=++.++.+.+. ..++||+++-. ..|++-...+.|. .. ..++-.+..+ +|||.+++
T Consensus 226 ~G~~~~m~~~~~~G~~al~~l~~~~~~~lpIhaHra--~~ga~~r~~~~Gi-s~-~~~l~kl~RL--aGaD~~~~ 294 (407)
T PRK09549 226 AGADALLFNVFAYGLDVLQSLAEDPEIPVPIMAHPA--VSGAYTPSPLYGI-SS-PLLLGKLLRY--AGADFSLF 294 (407)
T ss_pred cCCCeEEEeccccchHHHHHHHhcCCCCcEEEecCC--cccccccCCCCcC-cH-HHHHHHHHHH--cCCCcccc
Confidence 999999999975545666666553 34799998855 3333322223343 11 1234444455 79999876
No 32
>cd06557 KPHMT-like Ketopantoate hydroxymethyltransferase (KPHMT) is the first enzyme in the pantothenate biosynthesis pathway. Ketopantoate hydroxymethyltransferase (KPHMT) catalyzes the first committed step in the biosynthesis of pantothenate (vitamin B5), which is a precursor to coenzyme A and is required for penicillin biosynthesis.
Probab=94.78 E-value=1.4 Score=41.57 Aligned_cols=139 Identities=21% Similarity=0.275 Sum_probs=83.6
Q ss_pred HHHHHHHHHHhCCCcEEEeeecCCCCCCCCcceeeCCCCceecHHhHHHHHHHHHHHHH-cCCCccccCCC--CcchHHH
Q psy15126 18 LFQVIPMIRKQFPSLTIACDVCLCGYTSHGHCAIFNEDGSIHYEKTLKRLADISKAFSD-AGAHIVAPSDM--MDNRIHA 94 (300)
Q Consensus 18 ~~~~i~~ik~~~p~l~i~~Dvclc~yt~hGHcgi~~~~g~i~nd~Tl~~l~~~A~~~A~-aGad~vAPSdm--MDgrv~a 94 (300)
+...++.|.+..|.-.|++|. ||.+.+ .|.+..++.++..-+ +|++.|-..|- |-.+|.+
T Consensus 60 m~~~~~~V~r~~~~p~viaD~---~fg~y~--------------~~~~~av~~a~r~~~~aGa~aVkiEd~~~~~~~I~a 122 (254)
T cd06557 60 MIYHTRAVRRGAPRALVVADM---PFGSYQ--------------TSPEQALRNAARLMKEAGADAVKLEGGAEVAETIRA 122 (254)
T ss_pred HHHHHHHHHhcCCCCeEEEeC---CCCccc--------------CCHHHHHHHHHHHHHHhCCeEEEEcCcHHHHHHHHH
Confidence 445667777777777788998 654322 245667777777666 99999998775 3334443
Q ss_pred HHHHHhhCCCCCCcccccchhhhhcccchhhhhhhcCCCCCCCcceeeCCCCCCceEEEEeecccCCCCCCccccccCCC
Q psy15126 95 IKQSLFTSRQSSTTGLLSYSAKFCSAFYGPFREAAGSAPTFGDRSCYQLPCGSKGLAIRAAVCLCGYTSHGHCAIFNEDG 174 (300)
Q Consensus 95 ir~aLd~~g~~~~v~ImsysaK~aS~~YGPfRda~gS~~~~gdr~~yQ~~~~~~~~ai~~dvclc~yt~hGHcgi~~~~g 174 (300)
++ ++|. ++|.+ +|=+|+ +.-++ -+|..- |
T Consensus 123 l~----~agi----pV~gH---------------iGL~pq----~~~~~---------------gg~~~~---------g 151 (254)
T cd06557 123 LV----DAGI----PVMGH---------------IGLTPQ----SVNQL---------------GGYKVQ---------G 151 (254)
T ss_pred HH----HcCC----Ceecc---------------ccccce----eeecc---------------CCceec---------c
Confidence 33 5664 23321 111121 10000 000000 0
Q ss_pred cccchHhHHHHHHHHHhhhcccccCCCCCccccchhhhcCCceeeccCcchHHHHHHHHHhhCCCCCEEeEec
Q psy15126 175 SIHYEKTLKRLADISKAFSDAVYVPNHNTDRFQARDVSQGADFLMVKPALPYLDIISEVKSRHPAYPLFVYQV 247 (300)
Q Consensus 175 ~i~nd~tl~~l~~~a~~~a~~~~~~~~n~~~~~~~Da~~GADivmVkPsmm~ld~Ir~~~d~~~~vpi~aY~v 247 (300)
..|+..+.+.+.|+++ .++|||+| +-|..+- ..++++-++. ++|++....
T Consensus 152 --rt~~~a~~~i~ra~a~------------------~~AGA~~i-~lE~v~~-~~~~~i~~~v-~iP~igiGa 201 (254)
T cd06557 152 --KTEEEAERLLEDALAL------------------EEAGAFAL-VLECVPA-ELAKEITEAL-SIPTIGIGA 201 (254)
T ss_pred --CCHHHHHHHHHHHHHH------------------HHCCCCEE-EEcCCCH-HHHHHHHHhC-CCCEEEecc
Confidence 1344567888888888 79999998 4555553 7888888886 699998765
No 33
>TIGR03332 salvage_mtnW 2,3-diketo-5-methylthiopentyl-1-phosphate enolase. Members of this family are the methionine salvage pathway enzyme 2,3-diketo-5-methylthiopentyl-1-phosphate enolase, a homolog of RuBisCO. This protein family seems restricted to Bacillus subtilis and close relatives, where two separate proteins carry the enolase and phosphatase activities that in other species occur in a single protein, MtnC (TIGR01691).
Probab=94.49 E-value=0.14 Score=51.29 Aligned_cols=140 Identities=19% Similarity=0.204 Sum_probs=90.1
Q ss_pred HHhHHHHHHHHHHHHHcCCCccc--------cCCCCcchHHHHHHHHhhCCCCCCcccccchhhhhcccchhhhhhhcCC
Q psy15126 61 EKTLKRLADISKAFSDAGAHIVA--------PSDMMDNRIHAIKQSLFTSRQSSTTGLLSYSAKFCSAFYGPFREAAGSA 132 (300)
Q Consensus 61 d~Tl~~l~~~A~~~A~aGad~vA--------PSdmMDgrv~air~aLd~~g~~~~v~ImsysaK~aS~~YGPfRda~gS~ 132 (300)
-.|.+++++++..++..|+|+|= |..-+..||.++.++.++..-. .
T Consensus 151 Gl~~~~~A~~~y~~~~GGvD~IKDDE~l~dq~~~p~~~Rv~~~~~a~~~a~~e-T------------------------- 204 (407)
T TIGR03332 151 GRDLGYLKEQLRQQALGGVDLVKDDEILFETGLAPFEKRITEGKEVLQEVYEQ-T------------------------- 204 (407)
T ss_pred CCCHHHHHHHHHHHhccCcccccCCCCCCCCCCCCHHHHHHHHHHHHHHHHHH-H-------------------------
Confidence 57899999999999999999884 4667788888888888887652 2
Q ss_pred CCCCCcceeeCCCCCCceEEEEeecccCCCCCCccccccCCCcccchHhHHHHHHHHHhhhcccccCCCCCccccchhhh
Q psy15126 133 PTFGDRSCYQLPCGSKGLAIRAAVCLCGYTSHGHCAIFNEDGSIHYEKTLKRLADISKAFSDAVYVPNHNTDRFQARDVS 212 (300)
Q Consensus 133 ~~~gdr~~yQ~~~~~~~~ai~~dvclc~yt~hGHcgi~~~~g~i~nd~tl~~l~~~a~~~a~~~~~~~~n~~~~~~~Da~ 212 (300)
|.|+.|.++-.. . .++ +.+.+.-. .+
T Consensus 205 ---G~~~~y~~NiT~---------------------------~--~~e----m~~ra~~a------------------~~ 230 (407)
T TIGR03332 205 ---GHKTLYAVNLTG---------------------------R--TFD----LKDKAKRA------------------AE 230 (407)
T ss_pred ---CCcceEeecCCC---------------------------C--HHH----HHHHHHHH------------------HH
Confidence 667777766421 1 112 22222221 57
Q ss_pred cCCceeeccCcchHHHHHHHHHhh-CCCCCEEeEecccccHHHHHHHhCCCCCHHHHHHHHHHHHHHcCCCEEEe
Q psy15126 213 QGADFLMVKPALPYLDIISEVKSR-HPAYPLFVYQVSGEYAMLAFAAQAGALDLKRALMETLTCLRRGGADVIIS 286 (300)
Q Consensus 213 ~GADivmVkPsmm~ld~Ir~~~d~-~~~vpi~aY~vSgeY~~~r~Aa~~~~~n~~eal~E~~~~~~r~GAD~Ii~ 286 (300)
+|+..+||.|...=++.++.+.+. ..++||+++-. ..|++-...+.|+ +. ..++-.+..+ +|||.|++
T Consensus 231 ~G~~~~mv~~~~~G~~~~~~l~~~~~~~lpihaHra--~~ga~~r~~~~Gi-s~-~~~l~kl~RL--aGaD~~~~ 299 (407)
T TIGR03332 231 LGADVLLFNVFAYGLDVLQSLAEDDEIPVPIMAHPA--VSGAYTSSPFYGF-SH-SLLLGKLLRY--AGADFSLF 299 (407)
T ss_pred hCCCEEEEeccccChHHHHHHHhcCCCCcEEEEecC--cccccccCCCCcc-cH-HHHHHHHHHh--cCcCcccc
Confidence 999999999986645556666553 34799998855 3333221122333 11 1234444444 79998876
No 34
>PF00478 IMPDH: IMP dehydrogenase / GMP reductase domain; InterPro: IPR001093 Synonym(s): Inosine-5'-monophosphate dehydrogenase, Inosinic acid dehydrogenase; Synonym(s): Guanosine 5'-monophosphate oxidoreductase This entry contains two related enzymes IMP dehydrogenase and GMP reducatase. These enzymes adopt a TIM barrel structure. IMP dehydrogenase (1.1.1.205 from EC) (IMPDH) catalyzes the rate-limiting reaction of de novo GTP biosynthesis, the NAD-dependent reduction of IMP into XMP []. Inosine 5-phosphate + NAD+ + H2O = xanthosine 5-phosphate + NADH IMP dehydrogenase is associated with cell proliferation and is a possible target for cancer chemotherapy. Mammalian and bacterial IMPDHs are tetramers of identical chains. There are two IMP dehydrogenase isozymes in humans []. IMP dehydrogenase nearly always contains a long insertion that has two CBS domains within it. GMP reductase (1.7.1.7 from EC) catalyzes the irreversible and NADPH-dependent reductive deamination of GMP into IMP []. NADPH + guanosine 5-phosphate = NADP+ + inosine 5-phosphate + NH3 It converts nucleobase, nucleoside and nucleotide derivatives of G to A nucleotides, and maintains intracellular balance of A and G nucleotides.; GO: 0003824 catalytic activity, 0055114 oxidation-reduction process; PDB: 3FFS_D 1VRD_A 1JCN_B 1EEP_B 3TSB_B 3USB_B 3TSD_A 4FF0_A 4FEZ_A 3KHJ_D ....
Probab=94.10 E-value=0.16 Score=50.05 Aligned_cols=58 Identities=26% Similarity=0.406 Sum_probs=44.0
Q ss_pred hhcCCceeeccCc--c--hHHHHHHHHHhhCCCCCEEeEecccccHHHHHHHhCCCCCHHHHHHHHHHHHHHcCCCEEEe
Q psy15126 211 VSQGADFLMVKPA--L--PYLDIISEVKSRHPAYPLFVYQVSGEYAMLAFAAQAGALDLKRALMETLTCLRRGGADVIIS 286 (300)
Q Consensus 211 a~~GADivmVkPs--m--m~ld~Ir~~~d~~~~vpi~aY~vSgeY~~~r~Aa~~~~~n~~eal~E~~~~~~r~GAD~Ii~ 286 (300)
+++|+|+|.|-=+ . ..++.|+++|+.||++||++=+| +=.|..+++.++|||.|.+
T Consensus 117 ~~agvD~ivID~a~g~s~~~~~~ik~ik~~~~~~~viaGNV--------------------~T~e~a~~L~~aGad~vkV 176 (352)
T PF00478_consen 117 VEAGVDVIVIDSAHGHSEHVIDMIKKIKKKFPDVPVIAGNV--------------------VTYEGAKDLIDAGADAVKV 176 (352)
T ss_dssp HHTT-SEEEEE-SSTTSHHHHHHHHHHHHHSTTSEEEEEEE---------------------SHHHHHHHHHTT-SEEEE
T ss_pred HHcCCCEEEccccCccHHHHHHHHHHHHHhCCCceEEeccc--------------------CCHHHHHHHHHcCCCEEEE
Confidence 6899999988655 1 27999999999999999999988 2245556677899999987
Q ss_pred cc
Q psy15126 287 YY 288 (300)
Q Consensus 287 y~ 288 (300)
--
T Consensus 177 Gi 178 (352)
T PF00478_consen 177 GI 178 (352)
T ss_dssp SS
T ss_pred ec
Confidence 54
No 35
>PRK00311 panB 3-methyl-2-oxobutanoate hydroxymethyltransferase; Reviewed
Probab=94.06 E-value=2.3 Score=40.32 Aligned_cols=141 Identities=19% Similarity=0.265 Sum_probs=82.5
Q ss_pred HHHHHHHHHHhCCCcEEEeeecCCCCCCCCcceeeCCCCceecHHhHHHHHHHHHHHHH-cCCCccccCCCCcchHHHHH
Q psy15126 18 LFQVIPMIRKQFPSLTIACDVCLCGYTSHGHCAIFNEDGSIHYEKTLKRLADISKAFSD-AGAHIVAPSDMMDNRIHAIK 96 (300)
Q Consensus 18 ~~~~i~~ik~~~p~l~i~~Dvclc~yt~hGHcgi~~~~g~i~nd~Tl~~l~~~A~~~A~-aGad~vAPSdmMDgrv~air 96 (300)
+...++.|.+..|.-.|++|. ||.+ ...|.+..++.+....+ +|++.|-..|-- ..+..|
T Consensus 63 m~~h~~~V~r~~~~p~vvaD~---pfg~--------------y~~~~~~av~~a~r~~~~aGa~aVkiEdg~-~~~~~I- 123 (264)
T PRK00311 63 MIYHTKAVARGAPRALVVADM---PFGS--------------YQASPEQALRNAGRLMKEAGAHAVKLEGGE-EVAETI- 123 (264)
T ss_pred HHHHHHHHHhcCCCCcEEEeC---CCCC--------------ccCCHHHHHHHHHHHHHHhCCeEEEEcCcH-HHHHHH-
Confidence 345567777777776677998 6622 22355666666666666 999999987641 122223
Q ss_pred HHHhhCCCCCCcccccchhhhhcccchhhhhhhcCCCCCCCcceeeCCCCCCceEEEEeecccCCCCCCccccccCCCcc
Q psy15126 97 QSLFTSRQSSTTGLLSYSAKFCSAFYGPFREAAGSAPTFGDRSCYQLPCGSKGLAIRAAVCLCGYTSHGHCAIFNEDGSI 176 (300)
Q Consensus 97 ~aLd~~g~~~~v~ImsysaK~aS~~YGPfRda~gS~~~~gdr~~yQ~~~~~~~~ai~~dvclc~yt~hGHcgi~~~~g~i 176 (300)
++|..+|. ++|.+ +|=+|+. .-++ ...-+. |
T Consensus 124 ~al~~agI----pV~gH---------------iGL~pq~----~~~~----gg~~i~--------------------g-- 154 (264)
T PRK00311 124 KRLVERGI----PVMGH---------------LGLTPQS----VNVL----GGYKVQ--------------------G-- 154 (264)
T ss_pred HHHHHCCC----CEeee---------------eccccee----eccc----CCeeee--------------------c--
Confidence 33445665 34433 1222221 0000 000000 1
Q ss_pred cchHhHHHHHHHHHhhhcccccCCCCCccccchhhhcCCceeeccCcchHHHHHHHHHhhCCCCCEEeEec
Q psy15126 177 HYEKTLKRLADISKAFSDAVYVPNHNTDRFQARDVSQGADFLMVKPALPYLDIISEVKSRHPAYPLFVYQV 247 (300)
Q Consensus 177 ~nd~tl~~l~~~a~~~a~~~~~~~~n~~~~~~~Da~~GADivmVkPsmm~ld~Ir~~~d~~~~vpi~aY~v 247 (300)
..|+.++.+.+.|+.+ .++|||+| |-|..+- ..++++-++. ++|+....+
T Consensus 155 rt~~~a~~~i~ra~a~------------------~eAGA~~i-~lE~v~~-~~~~~i~~~l-~iP~igiGa 204 (264)
T PRK00311 155 RDEEAAEKLLEDAKAL------------------EEAGAFAL-VLECVPA-ELAKEITEAL-SIPTIGIGA 204 (264)
T ss_pred CCHHHHHHHHHHHHHH------------------HHCCCCEE-EEcCCCH-HHHHHHHHhC-CCCEEEecc
Confidence 1344567888888888 79999998 4455544 7888888876 699987754
No 36
>cd00377 ICL_PEPM Members of the ICL/PEPM enzyme family catalyze either P-C or C-C bond formation/cleavage. Known members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), and 2-methylisocitrate lyase (MICL). Isocitrate lyase (ICL) catalyzes the conversion of isocitrate to succinate and glyoxylate, the first committed step in the glyoxylate pathway. This carbon-conserving pathway is present in most prokaryotes, lower eukaryotes and plants, but has not been observed in vertebrates. PEP mutase (PEPM) turns phosphoenolpyruvate (PEP) into phosphonopyruvate (P-pyr), an important intermediate in the formation of organophosphonates, which function as antibiotics or play a role in pathogenesis or signaling. P-pyr can be hydrolyzed by phosphonopyruvate hydrolase (PPH) to from pyruvate and phosphate. Oxaloacetate acetylhydrolase (OAH) catalyzes the hydrolytic cleavage of oxaloacetate to
Probab=93.84 E-value=0.99 Score=41.61 Aligned_cols=60 Identities=22% Similarity=0.174 Sum_probs=40.4
Q ss_pred hhcCCceeeccCcchHHHHHHHHHhhCCCCCEEeEecccccHHHHHHHhCCCCCHHHHHHHHHHHHHHcCCCEEEecchH
Q psy15126 211 VSQGADFLMVKPALPYLDIISEVKSRHPAYPLFVYQVSGEYAMLAFAAQAGALDLKRALMETLTCLRRGGADVIISYYTP 290 (300)
Q Consensus 211 a~~GADivmVkPsmm~ld~Ir~~~d~~~~vpi~aY~vSgeY~~~r~Aa~~~~~n~~eal~E~~~~~~r~GAD~Ii~y~A~ 290 (300)
.++|||+|+|-|-. -.+-++++.++ .+.|++.|...+.- +.+ ..++.+.|..+++.-+.+
T Consensus 170 ~~AGAD~v~v~~~~-~~~~~~~~~~~-~~~Pl~~~~~~~~~----------~~~--------~~~l~~lG~~~v~~~~~~ 229 (243)
T cd00377 170 AEAGADGIFVEGLK-DPEEIRAFAEA-PDVPLNVNMTPGGN----------LLT--------VAELAELGVRRVSYGLAL 229 (243)
T ss_pred HHcCCCEEEeCCCC-CHHHHHHHHhc-CCCCEEEEecCCCC----------CCC--------HHHHHHCCCeEEEEChHH
Confidence 79999999985432 55777777776 47999999763321 122 234556788887765544
No 37
>PF00016 RuBisCO_large: Ribulose bisphosphate carboxylase large chain, catalytic domain; InterPro: IPR000685 Ribulose bisphosphate carboxylase (RuBisCO) [, ] catalyses the initial step in Calvin's reductive pentose phosphate cycle in plants as well as purple and green bacteria. It consists of a large catalytic unit and a small subunit of undetermined function. In plants, the large subunit is coded by the chloroplastic genome while the small subunit is encoded in the nuclear genome. Molecular activation of RuBisCO by CO2 involves the formation of a carbamate with the epsilon-amino group of a conserved lysine residue. This carbamate is stabilised by a magnesium ion. One of the ligands of the magnesium ion is an aspartic acid residue close to the active site lysine [].; GO: 0000287 magnesium ion binding, 0016984 ribulose-bisphosphate carboxylase activity, 0015977 carbon fixation, 0009536 plastid; PDB: 3AXM_A 1WDD_A 3AXK_A 1SVD_A 1RXO_B 1UPP_C 1UPM_R 1RCO_L 8RUC_G 1RCX_B ....
Probab=93.03 E-value=0.14 Score=49.69 Aligned_cols=138 Identities=18% Similarity=0.280 Sum_probs=81.5
Q ss_pred HhHHHHHHHHHHHHHcCCCccc--------cCCCCcchHHHHHHHHhhCCCCCCcccccchhhhhcccchhhhhhhcCCC
Q psy15126 62 KTLKRLADISKAFSDAGAHIVA--------PSDMMDNRIHAIKQSLFTSRQSSTTGLLSYSAKFCSAFYGPFREAAGSAP 133 (300)
Q Consensus 62 ~Tl~~l~~~A~~~A~aGad~vA--------PSdmMDgrv~air~aLd~~g~~~~v~ImsysaK~aS~~YGPfRda~gS~~ 133 (300)
.|.+.+++++.+++..|+|+|= |-.-+.-||.+..+++++..-. .
T Consensus 27 lsp~~~a~~~y~~a~GG~D~IKDDE~l~~q~f~p~~eRv~~~~~a~~~a~~e-T-------------------------- 79 (309)
T PF00016_consen 27 LSPEELAELAYEFALGGVDFIKDDENLANQPFCPFEERVPACMEAVDRAEEE-T-------------------------- 79 (309)
T ss_dssp S-HHHHHHHHHHHHHTTSSEEEE-TT-SSBTTBEHHHHHHHHHHHHHHHHHH-H--------------------------
T ss_pred ecccchhhHHHhhhhcccceecccccccCcccccHhHhHHhhhhhhhccccc-c--------------------------
Confidence 6899999999999999999883 3455677888877777765441 1
Q ss_pred CCCCcceeeCCCCCCceEEEEeecccCCCCCCccccccCCCcccchHhHHHHHHHHHhhhcccccCCCCCccccchhhhc
Q psy15126 134 TFGDRSCYQLPCGSKGLAIRAAVCLCGYTSHGHCAIFNEDGSIHYEKTLKRLADISKAFSDAVYVPNHNTDRFQARDVSQ 213 (300)
Q Consensus 134 ~~gdr~~yQ~~~~~~~~ai~~dvclc~yt~hGHcgi~~~~g~i~nd~tl~~l~~~a~~~a~~~~~~~~n~~~~~~~Da~~ 213 (300)
|.++.|..+-- ..|++.+.+.+.-- .++
T Consensus 80 --G~~~ly~~NiT--------------------------------~~~~~em~~ra~~a------------------~~~ 107 (309)
T PF00016_consen 80 --GEKKLYAANIT--------------------------------ADTPDEMIERAEYA------------------KEA 107 (309)
T ss_dssp --SS--EEEEEE---------------------------------SSSHHHHHHHHHHH------------------HHH
T ss_pred --ceecceecccc--------------------------------cccHHHHHHhhhhh------------------hhh
Confidence 44555554421 01233334443332 689
Q ss_pred CCceeeccCcch---HHHHHHHHHhhCCCCCEEeEecccccHHHHHHHhCCCCCHHHHHHHHHHHHHHcCCCEEEe
Q psy15126 214 GADFLMVKPALP---YLDIISEVKSRHPAYPLFVYQVSGEYAMLAFAAQAGALDLKRALMETLTCLRRGGADVIIS 286 (300)
Q Consensus 214 GADivmVkPsmm---~ld~Ir~~~d~~~~vpi~aY~vSgeY~~~r~Aa~~~~~n~~eal~E~~~~~~r~GAD~Ii~ 286 (300)
|++.|||.|... -+..+++..+.. .+||+++-+ ..|.+-.-.+.|+ .. .+ +-.+..+ +|||.|++
T Consensus 108 G~~~vmv~~~~~G~~~~~~l~~~~~~~-~~~ih~H~A--~~ga~~r~~~~Gi-s~-~v-l~kl~RL--aGaD~vh~ 175 (309)
T PF00016_consen 108 GANAVMVNVLTAGFSALQSLAEDARDN-GLPIHAHRA--GHGAFTRSPDHGI-SF-RV-LGKLMRL--AGADHVHF 175 (309)
T ss_dssp TGSEEEEEHHHHCHHHHHHHHHHHHHH-TSEEEEETT--THHHHHSSSSSEE-HH-HH-HHHHHHH--HT-SEEEE
T ss_pred ccchhhcccccccccccchhhhhhccc-ceeeeeccc--cchhhcccccCcc-ce-ee-eccceec--ceeeeecc
Confidence 999999988643 355555554443 488888744 4444432223344 22 23 3334444 79999985
No 38
>cd08212 RuBisCO_large_I Ribulose bisphosphate carboxylase large chain, Form I. Ribulose bisphosphate carboxylase (Rubisco) plays an important role in the Calvin reductive pentose phosphate pathway. It catalyzes the primary CO2 fixation step. Rubisco is activated by carbamylation of an active site lysine, stabilized by a divalent cation, which then catalyzes the proton abstraction from the substrate ribulose 1,5 bisphosphate (RuBP) and leads to the formation of two molecules of 3-phosphoglycerate. Members of the Rubisco family can be divided into 4 subgroups, Form I-IV , which differ in their taxonomic distribution and subunit composition. Form I is the most abundant class, present in plants, algae, and bacteria, and forms large complexes composed of 8 large and 8 small subunits.
Probab=92.81 E-value=0.4 Score=48.72 Aligned_cols=140 Identities=14% Similarity=0.145 Sum_probs=86.0
Q ss_pred HHhHHHHHHHHHHHHHcCCCccc--------cCCCCcchHHHHHHHHhhCCCCCCcccccchhhhhcccchhhhhhhcCC
Q psy15126 61 EKTLKRLADISKAFSDAGAHIVA--------PSDMMDNRIHAIKQSLFTSRQSSTTGLLSYSAKFCSAFYGPFREAAGSA 132 (300)
Q Consensus 61 d~Tl~~l~~~A~~~A~aGad~vA--------PSdmMDgrv~air~aLd~~g~~~~v~ImsysaK~aS~~YGPfRda~gS~ 132 (300)
=.|.+.+++++..++..|+|+|= |-.-+..||.++.+++++..-. .
T Consensus 157 Glsp~~~A~~~~~~~~GGvD~IKDDE~l~~~~~~p~~~Rv~~~~~a~~~a~~e-T------------------------- 210 (450)
T cd08212 157 GLSAKNYGRVVYECLRGGLDFTKDDENINSQPFMRWRDRFLFVAEAVNKAQAE-T------------------------- 210 (450)
T ss_pred CCCHHHHHHHHHHHHccCCcccccCccCCCCCCCCHHHHHHHHHHHHHHHHHh-h-------------------------
Confidence 36899999999999999999873 2555677888888877776542 1
Q ss_pred CCCCCcceeeCCCCCCceEEEEeecccCCCCCCccccccCCCcccchHhHHHHHHHHHhhhcccccCCCCCccccchhhh
Q psy15126 133 PTFGDRSCYQLPCGSKGLAIRAAVCLCGYTSHGHCAIFNEDGSIHYEKTLKRLADISKAFSDAVYVPNHNTDRFQARDVS 212 (300)
Q Consensus 133 ~~~gdr~~yQ~~~~~~~~ai~~dvclc~yt~hGHcgi~~~~g~i~nd~tl~~l~~~a~~~a~~~~~~~~n~~~~~~~Da~ 212 (300)
|.++.|.++--. + +.+.+.+.+.-. .+
T Consensus 211 ---G~~~~y~~NiTa-------~-------------------------~~~em~~ra~~a------------------~~ 237 (450)
T cd08212 211 ---GEVKGHYLNVTA-------G-------------------------TMEEMYKRAEFA------------------KE 237 (450)
T ss_pred ---CCcceeeccccC-------C-------------------------CHHHHHHHHHHH------------------HH
Confidence 556666665310 0 122333333332 67
Q ss_pred cCCceeeccCcchHHHHHHHHHh--hCCCCCEEeEecccccHHHHHHHhCCCCCHHHHHHHHHHHHHHcCCCEEEec
Q psy15126 213 QGADFLMVKPALPYLDIISEVKS--RHPAYPLFVYQVSGEYAMLAFAAQAGALDLKRALMETLTCLRRGGADVIISY 287 (300)
Q Consensus 213 ~GADivmVkPsmm~ld~Ir~~~d--~~~~vpi~aY~vSgeY~~~r~Aa~~~~~n~~eal~E~~~~~~r~GAD~Ii~y 287 (300)
+|+..+||.--- =++.++.+.+ +.+++||+++-+ ..|++-...+.|+ .. .+ +-.|..+ +|||.|++-
T Consensus 238 ~G~~~~mv~~~~-G~~~l~~l~~~a~~~~l~IhaHrA--~~ga~~r~~~~Gi-s~-~v-l~kl~RL--aGaD~ih~~ 306 (450)
T cd08212 238 LGSPIIMHDLLT-GFTAIQSLAKWCRDNGMLLHLHRA--GHATYDRQKNHGI-HF-RV-LAKWLRL--SGVDHIHAG 306 (450)
T ss_pred hCCCeEeeeccc-ccchHHHHHHHhhhcCceEEeccc--cceecccCccCCc-CH-HH-HHHHHHH--cCCCccccC
Confidence 899999998433 4455555554 235999999966 3333222223344 22 23 3444444 899998753
No 39
>PRK05096 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=92.81 E-value=0.41 Score=47.44 Aligned_cols=55 Identities=18% Similarity=0.319 Sum_probs=43.0
Q ss_pred hcCCceeeccCcc----hHHHHHHHHHhhCCCCCEEeEecccccHHHHHHHhCCCCCHHHHHHHHHHHHHHcCCCEEEe
Q psy15126 212 SQGADFLMVKPAL----PYLDIISEVKSRHPAYPLFVYQVSGEYAMLAFAAQAGALDLKRALMETLTCLRRGGADVIIS 286 (300)
Q Consensus 212 ~~GADivmVkPsm----m~ld~Ir~~~d~~~~vpi~aY~vSgeY~~~r~Aa~~~~~n~~eal~E~~~~~~r~GAD~Ii~ 286 (300)
.+|+|+|.|-.+- -.++.|+++|+.||+++|++=+| .. .|...++..+|||.|-|
T Consensus 120 ~~g~D~iviD~AhGhs~~~i~~ik~ik~~~P~~~vIaGNV---------------~T-----~e~a~~Li~aGAD~vKV 178 (346)
T PRK05096 120 SPALNFICIDVANGYSEHFVQFVAKAREAWPDKTICAGNV---------------VT-----GEMVEELILSGADIVKV 178 (346)
T ss_pred CCCCCEEEEECCCCcHHHHHHHHHHHHHhCCCCcEEEecc---------------cC-----HHHHHHHHHcCCCEEEE
Confidence 3699999888872 27999999999999999999877 22 34444566799999864
No 40
>PRK05718 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=92.75 E-value=2 Score=39.29 Aligned_cols=126 Identities=17% Similarity=0.263 Sum_probs=81.9
Q ss_pred eecHHhHHHHHHHHHHHHHcCCCccccCCCCcchHHHHHHHHhhCCCCCCcccccchhhhhcccchhhhhhhcCCCCCCC
Q psy15126 58 IHYEKTLKRLADISKAFSDAGAHIVAPSDMMDNRIHAIKQSLFTSRQSSTTGLLSYSAKFCSAFYGPFREAAGSAPTFGD 137 (300)
Q Consensus 58 i~nd~Tl~~l~~~A~~~A~aGad~vAPSdmMDgrv~air~aLd~~g~~~~v~ImsysaK~aS~~YGPfRda~gS~~~~gd 137 (300)
|....+.+...+.+..+.+.|+++|-..-.-++-...|++.-.+ | .+
T Consensus 20 V~r~~~~~~a~~i~~al~~~Gi~~iEitl~~~~~~~~I~~l~~~--~-p~------------------------------ 66 (212)
T PRK05718 20 VIVINKLEDAVPLAKALVAGGLPVLEVTLRTPAALEAIRLIAKE--V-PE------------------------------ 66 (212)
T ss_pred EEEcCCHHHHHHHHHHHHHcCCCEEEEecCCccHHHHHHHHHHH--C-CC------------------------------
Confidence 44556788999999999999999998875556655555544321 3 12
Q ss_pred cceeeCCCCCCceEEEEeecccCCCCCCccccccCCCcccchHhHHHHHHHHHhhhcccccCCCCCccccchhhhcCCce
Q psy15126 138 RSCYQLPCGSKGLAIRAAVCLCGYTSHGHCAIFNEDGSIHYEKTLKRLADISKAFSDAVYVPNHNTDRFQARDVSQGADF 217 (300)
Q Consensus 138 r~~yQ~~~~~~~~ai~~dvclc~yt~hGHcgi~~~~g~i~nd~tl~~l~~~a~~~a~~~~~~~~n~~~~~~~Da~~GADi 217 (300)
+.|=+ |.|.++++++. | +++|||+
T Consensus 67 ------------~~IGA-------------------GTVl~~~~a~~--------a-----------------~~aGA~F 90 (212)
T PRK05718 67 ------------ALIGA-------------------GTVLNPEQLAQ--------A-----------------IEAGAQF 90 (212)
T ss_pred ------------CEEEE-------------------eeccCHHHHHH--------H-----------------HHcCCCE
Confidence 11112 44555544322 1 7899999
Q ss_pred eeccCcchHHHHHHHHHhhCCCCCEEeEecccccHHHHHHHhCCCCCHHHHHHHHHHHHHHcCCCEEEecchHHH--HHH
Q psy15126 218 LMVKPALPYLDIISEVKSRHPAYPLFVYQVSGEYAMLAFAAQAGALDLKRALMETLTCLRRGGADVIISYYTPRV--LEW 295 (300)
Q Consensus 218 vmVkPsmm~ld~Ir~~~d~~~~vpi~aY~vSgeY~~~r~Aa~~~~~n~~eal~E~~~~~~r~GAD~Ii~y~A~~~--ld~ 295 (300)
+ |.|.+.- ++|+..++. ++|.+. |..+.. |+.... +.|||+|-++|+..+ .++
T Consensus 91 i-vsP~~~~-~vi~~a~~~--~i~~iP----------------G~~Tpt----Ei~~a~-~~Ga~~vKlFPa~~~gg~~~ 145 (212)
T PRK05718 91 I-VSPGLTP-PLLKAAQEG--PIPLIP----------------GVSTPS----ELMLGM-ELGLRTFKFFPAEASGGVKM 145 (212)
T ss_pred E-ECCCCCH-HHHHHHHHc--CCCEeC----------------CCCCHH----HHHHHH-HCCCCEEEEccchhccCHHH
Confidence 8 7898655 888888874 566553 334554 444455 799999999997643 344
Q ss_pred Hh
Q psy15126 296 LR 297 (300)
Q Consensus 296 l~ 297 (300)
++
T Consensus 146 lk 147 (212)
T PRK05718 146 LK 147 (212)
T ss_pred HH
Confidence 44
No 41
>CHL00040 rbcL ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit
Probab=92.65 E-value=0.1 Score=53.22 Aligned_cols=138 Identities=13% Similarity=0.124 Sum_probs=85.4
Q ss_pred HHhHHHHHHHHHHHHHcCCCccc--------cCCCCcchHHHHHHHHhhCCCCCCcccccchhhhhcccchhhhhhhcCC
Q psy15126 61 EKTLKRLADISKAFSDAGAHIVA--------PSDMMDNRIHAIKQSLFTSRQSSTTGLLSYSAKFCSAFYGPFREAAGSA 132 (300)
Q Consensus 61 d~Tl~~l~~~A~~~A~aGad~vA--------PSdmMDgrv~air~aLd~~g~~~~v~ImsysaK~aS~~YGPfRda~gS~ 132 (300)
=.|.+.+++++..++..|+|+|= |-.-+.-||.++.+++++..-. .
T Consensus 179 GLsp~~~A~~~y~~~~GGvD~IKDDE~l~dq~~~p~~eRv~~~~~a~~~a~~e-T------------------------- 232 (475)
T CHL00040 179 GLSAKNYGRAVYECLRGGLDFTKDDENVNSQPFMRWRDRFLFCAEAIYKAQAE-T------------------------- 232 (475)
T ss_pred CCCHHHHHHHHHHHHcCCCcccccCccCCCCCCCCHHHHHHHHHHHHHHHHHh-h-------------------------
Confidence 36899999999999999999873 3455677787777777776542 1
Q ss_pred CCCCCcceeeCCCCCCceEEEEeecccCCCCCCccccccCCCcccchHhHHHHHHHHHhhhcccccCCCCCccccchhhh
Q psy15126 133 PTFGDRSCYQLPCGSKGLAIRAAVCLCGYTSHGHCAIFNEDGSIHYEKTLKRLADISKAFSDAVYVPNHNTDRFQARDVS 212 (300)
Q Consensus 133 ~~~gdr~~yQ~~~~~~~~ai~~dvclc~yt~hGHcgi~~~~g~i~nd~tl~~l~~~a~~~a~~~~~~~~n~~~~~~~Da~ 212 (300)
|.++.|.++-- ++ +.+.+.+.+.-. .+
T Consensus 233 ---G~~~~y~~NiT-------a~-------------------------~~~em~~ra~~a------------------~e 259 (475)
T CHL00040 233 ---GEIKGHYLNAT-------AG-------------------------TCEEMYKRAVFA------------------RE 259 (475)
T ss_pred ---CCcceeeeccC-------CC-------------------------CHHHHHHHHHHH------------------HH
Confidence 55666655321 00 112222222221 67
Q ss_pred cCCceeeccCcchHHHHHHHHHh--hCCCCCEEeEecccccHHHHHHHhCCCCCHHHHHHHHHHHHHHcCCCEE
Q psy15126 213 QGADFLMVKPALPYLDIISEVKS--RHPAYPLFVYQVSGEYAMLAFAAQAGALDLKRALMETLTCLRRGGADVI 284 (300)
Q Consensus 213 ~GADivmVkPsmm~ld~Ir~~~d--~~~~vpi~aY~vSgeY~~~r~Aa~~~~~n~~eal~E~~~~~~r~GAD~I 284 (300)
+|+..+||.|-..=++.++.+.+ +..++||+++-+ ..|++-...+.|+ .. -++-.|..+ +|||.|
T Consensus 260 ~G~~~~mv~~~~~G~~al~~l~~~~~~~~l~IhaHrA--~~ga~~r~~~~Gi-s~--~vl~KL~RL--aGaD~i 326 (475)
T CHL00040 260 LGVPIVMHDYLTGGFTANTSLAHYCRDNGLLLHIHRA--MHAVIDRQKNHGI-HF--RVLAKALRM--SGGDHI 326 (475)
T ss_pred cCCceEEEeccccccchHHHHHHHhhhcCceEEeccc--cccccccCccCCC-cH--HHHHHHHHH--cCCCcc
Confidence 99999999997553444555553 235899999966 3333322223454 22 224444444 899999
No 42
>cd08208 RLP_Photo Ribulose bisphosphate carboxylase like proteins from phototrophic bacteria. Ribulose bisphosphate carboxylase (Rubisco) plays an important role in the Calvin reductive pentose phosphate pathway. It catalyzes the primary CO2 fixation step. Rubisco is activated by carbamylation of an active site lysine, stabilized by a divalent cation, which then catalyzes the proton abstraction from the substrate ribulose 1,5 bisphosphate (RuBP) and leads to the formation of two molecules of 3-phosphoglycerate. Members of the Rubisco family can be divided into 4 subgroups, Form I-IV, which differ in their taxonomic distribution and subunit composition. Form I-III have Rubisco activity, while Form IV, also called Rubisco-like proteins (RLP), are missing critical active site residues and therefore do not catalyze CO2 fixation. They are believed to utilize a related enzymatic mechanism, but have divergent functions. The specific function of this subgroup is unknown.
Probab=92.53 E-value=0.69 Score=46.78 Aligned_cols=138 Identities=17% Similarity=0.171 Sum_probs=85.4
Q ss_pred HHhHHHHHHHHHHHHHcCCCccc--------cCCCCcchHHHHHHHHhhCCCCCCcccccchhhhhcccchhhhhhhcCC
Q psy15126 61 EKTLKRLADISKAFSDAGAHIVA--------PSDMMDNRIHAIKQSLFTSRQSSTTGLLSYSAKFCSAFYGPFREAAGSA 132 (300)
Q Consensus 61 d~Tl~~l~~~A~~~A~aGad~vA--------PSdmMDgrv~air~aLd~~g~~~~v~ImsysaK~aS~~YGPfRda~gS~ 132 (300)
=.|.+.+++++..++..|+|+|= |-.-+.-|+.+..+++++..-. .
T Consensus 172 GLsp~~~a~~~y~~~~GGvD~IKDDE~l~~q~f~p~~eRv~~~~~ai~~a~~e-T------------------------- 225 (424)
T cd08208 172 GLPPGEFAELGYQSWLGGLDIAKDDEMLADVDWCPLEERAALLGKARRRAEAE-T------------------------- 225 (424)
T ss_pred cCCHHHHHHHHHHHHcCCcccccccccccCCCCCCHHHHHHHHHHHHHHHHHh-h-------------------------
Confidence 36899999999999999999873 2444566777777777665441 1
Q ss_pred CCCCCcceeeCCCCCCceEEEEeecccCCCCCCccccccCCCcccchHhHHHHHHHHHhhhcccccCCCCCccccchhhh
Q psy15126 133 PTFGDRSCYQLPCGSKGLAIRAAVCLCGYTSHGHCAIFNEDGSIHYEKTLKRLADISKAFSDAVYVPNHNTDRFQARDVS 212 (300)
Q Consensus 133 ~~~gdr~~yQ~~~~~~~~ai~~dvclc~yt~hGHcgi~~~~g~i~nd~tl~~l~~~a~~~a~~~~~~~~n~~~~~~~Da~ 212 (300)
|.++.|.++-- + +-|+..++ +.-- .+
T Consensus 226 ---G~~~~ya~NiT---------------------------~--~~~em~~r----a~~a------------------~~ 251 (424)
T cd08208 226 ---GVPKIYLANIT---------------------------D--EVDRLMEL----HDVA------------------VR 251 (424)
T ss_pred ---CCcceEEEEcc---------------------------C--CHHHHHHH----HHHH------------------HH
Confidence 55666765532 1 12333333 2221 67
Q ss_pred cCCceeeccCcchHHHHHHHHHhhCCCCCEEeEecccccHHHHHHHhCCCCCHHHHHHHHHHHHHHcCCCEEEe
Q psy15126 213 QGADFLMVKPALPYLDIISEVKSRHPAYPLFVYQVSGEYAMLAFAAQAGALDLKRALMETLTCLRRGGADVIIS 286 (300)
Q Consensus 213 ~GADivmVkPsmm~ld~Ir~~~d~~~~vpi~aY~vSgeY~~~r~Aa~~~~~n~~eal~E~~~~~~r~GAD~Ii~ 286 (300)
+|+.++||.|-..=++.++.+.+. .++||+++-. ..|++-.-.+.|+ .. -++-.+..+ +|||.|++
T Consensus 252 ~G~~~vmv~~~~~G~~al~~L~~~-~~l~ihaHra--~~ga~~r~~~~Gi-s~--~vl~Kl~RL--aGaD~ih~ 317 (424)
T cd08208 252 NGANALLINAMPVGLSAVRMLRKH-AQVPLIAHFP--FIASFSRLEKYGI-HS--RVMTKLQRL--AGLDVVIM 317 (424)
T ss_pred hCCCEEEEeeecccHHHHHHHHhc-CCCeEEeccC--ccccccCCCCCCC-cH--HHHHHHHHH--cCCCeeec
Confidence 999999999986545667776665 4899998855 2222211122343 22 223334444 79999886
No 43
>TIGR00683 nanA N-acetylneuraminate lyase. N-acetylneuraminate lyase is also known as N-acetylneuraminic acid aldolase, sialic acid aldolase, or sialate lyase. It is an intracellular enzyme. The structure of this homotetrameric enzyme related to dihydrodipicolinate synthase is known. In Clostridium tertium, the enzyme appears to be in an operon with a secreted sialidase that releases sialic acid from host sialoglycoconjugates. In several E. coli strains, however, this enzyme is responsible for N-acetyl-D-neuraminic acid synthesis for capsule production by condensing N-acetyl-D-mannosamine and pyruvate.
Probab=92.44 E-value=1.3 Score=41.63 Aligned_cols=82 Identities=26% Similarity=0.269 Sum_probs=52.8
Q ss_pred ccCCCcccchHhHHHHHHHHHhhhcccccCCCCCccccchhhhcC-Cceeecc------Ccch---HHHHHHHHHhhC-C
Q psy15126 170 FNEDGSIHYEKTLKRLADISKAFSDAVYVPNHNTDRFQARDVSQG-ADFLMVK------PALP---YLDIISEVKSRH-P 238 (300)
Q Consensus 170 ~~~~g~i~nd~tl~~l~~~a~~~a~~~~~~~~n~~~~~~~Da~~G-ADivmVk------Psmm---~ld~Ir~~~d~~-~ 238 (300)
|++||+|+.+.+-+.+-.. ++.| +|-|.|. ++|. +..+++.+.+.. .
T Consensus 12 f~~dg~iD~~~~~~~i~~~----------------------i~~G~v~gi~~~GstGE~~~Lt~eEr~~~~~~~~~~~~~ 69 (290)
T TIGR00683 12 FNEDGTINEKGLRQIIRHN----------------------IDKMKVDGLYVGGSTGENFMLSTEEKKEIFRIAKDEAKD 69 (290)
T ss_pred CCCCCCcCHHHHHHHHHHH----------------------HhCCCcCEEEECCcccccccCCHHHHHHHHHHHHHHhCC
Confidence 4677887777765444333 6789 9998776 4433 788888877762 3
Q ss_pred CCCEEeEecccccHHHHHHHhCCCCCHHHHHHHHHHHHHHcCCCEEEecc
Q psy15126 239 AYPLFVYQVSGEYAMLAFAAQAGALDLKRALMETLTCLRRGGADVIISYY 288 (300)
Q Consensus 239 ~vpi~aY~vSgeY~~~r~Aa~~~~~n~~eal~E~~~~~~r~GAD~Ii~y~ 288 (300)
++||++- | +-.+.++++ |..+..++.|||.||+.|
T Consensus 70 ~~pvi~g-v-------------~~~~t~~~i-~la~~a~~~Gad~v~v~~ 104 (290)
T TIGR00683 70 QIALIAQ-V-------------GSVNLKEAV-ELGKYATELGYDCLSAVT 104 (290)
T ss_pred CCcEEEe-c-------------CCCCHHHHH-HHHHHHHHhCCCEEEEeC
Confidence 5898865 2 123455553 444444578888888855
No 44
>TIGR03249 KdgD 5-dehydro-4-deoxyglucarate dehydratase. 5-dehydro-4-deoxyglucarate dehydratase not only catalyzes the dehydration of the substrate (diol to ketone + water), but causes the decarboxylation of the intermediate product to yield 2-oxoglutarate semialdehyde (2,5-dioxopentanoate). The gene for the enzyme is usually observed in the vicinity of transporters and dehydratases handling D-galactarate and D-gluconate as well as aldehyde dehydrogenases which convert the product to alpha-ketoglutarate.
Probab=92.15 E-value=1.3 Score=41.35 Aligned_cols=81 Identities=19% Similarity=0.264 Sum_probs=50.8
Q ss_pred ccCCCcccchHhHHHHHHHHHhhhcccccCCCCCccccchhhhcCCceeeccCc------ch---HHHHHHHHHhh-CCC
Q psy15126 170 FNEDGSIHYEKTLKRLADISKAFSDAVYVPNHNTDRFQARDVSQGADFLMVKPA------LP---YLDIISEVKSR-HPA 239 (300)
Q Consensus 170 ~~~~g~i~nd~tl~~l~~~a~~~a~~~~~~~~n~~~~~~~Da~~GADivmVkPs------mm---~ld~Ir~~~d~-~~~ 239 (300)
|++||+|+.+..-+.+... +++|+|-|.|.=+ |. +..+++.+.+. -.+
T Consensus 17 f~~dg~iD~~~l~~li~~l----------------------~~~Gv~gi~v~GstGE~~~Lt~eEr~~v~~~~~~~~~g~ 74 (296)
T TIGR03249 17 FDADGSFDEAAYRENIEWL----------------------LGYGLEALFAAGGTGEFFSLTPAEYEQVVEIAVSTAKGK 74 (296)
T ss_pred cCCCCCcCHHHHHHHHHHH----------------------HhcCCCEEEECCCCcCcccCCHHHHHHHHHHHHHHhCCC
Confidence 4788998887764443333 6789999977643 22 78888877776 346
Q ss_pred CCEEeEecccccHHHHHHHhCCCCCHHHHHHHHHHHHHHcCCCEEEecc
Q psy15126 240 YPLFVYQVSGEYAMLAFAAQAGALDLKRALMETLTCLRRGGADVIISYY 288 (300)
Q Consensus 240 vpi~aY~vSgeY~~~r~Aa~~~~~n~~eal~E~~~~~~r~GAD~Ii~y~ 288 (300)
+||++- |+ . +.++++.. .+..++.|||.+|+.|
T Consensus 75 ~pvi~g-v~-------------~-~t~~ai~~-a~~a~~~Gadav~~~p 107 (296)
T TIGR03249 75 VPVYTG-VG-------------G-NTSDAIEI-ARLAEKAGADGYLLLP 107 (296)
T ss_pred CcEEEe-cC-------------c-cHHHHHHH-HHHHHHhCCCEEEECC
Confidence 899876 21 1 33444433 3333467777777754
No 45
>TIGR01182 eda Entner-Doudoroff aldolase. 2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida
Probab=92.08 E-value=3.5 Score=37.78 Aligned_cols=121 Identities=17% Similarity=0.242 Sum_probs=82.2
Q ss_pred eecHHhHHHHHHHHHHHHHcCCCccccCCCCcchHHHHHHHHhhCCCCCCcccccchhhhhcccchhhhhhhcCCCCCCC
Q psy15126 58 IHYEKTLKRLADISKAFSDAGAHIVAPSDMMDNRIHAIKQSLFTSRQSSTTGLLSYSAKFCSAFYGPFREAAGSAPTFGD 137 (300)
Q Consensus 58 i~nd~Tl~~l~~~A~~~A~aGad~vAPSdmMDgrv~air~aLd~~g~~~~v~ImsysaK~aS~~YGPfRda~gS~~~~gd 137 (300)
|....+.+...+.+..+.+.|++++...---++-...|++.-.. + .++.
T Consensus 13 Vlr~~~~e~a~~~~~al~~~Gi~~iEit~~t~~a~~~i~~l~~~--~-~~~~---------------------------- 61 (204)
T TIGR01182 13 VIRIDDVDDALPLAKALIEGGLRVLEVTLRTPVALDAIRLLRKE--V-PDAL---------------------------- 61 (204)
T ss_pred EEecCCHHHHHHHHHHHHHcCCCEEEEeCCCccHHHHHHHHHHH--C-CCCE----------------------------
Confidence 34445788899999999999999999866667777777666432 2 1111
Q ss_pred cceeeCCCCCCceEEEEeecccCCCCCCccccccCCCcccchHhHHHHHHHHHhhhcccccCCCCCccccchhhhcCCce
Q psy15126 138 RSCYQLPCGSKGLAIRAAVCLCGYTSHGHCAIFNEDGSIHYEKTLKRLADISKAFSDAVYVPNHNTDRFQARDVSQGADF 217 (300)
Q Consensus 138 r~~yQ~~~~~~~~ai~~dvclc~yt~hGHcgi~~~~g~i~nd~tl~~l~~~a~~~a~~~~~~~~n~~~~~~~Da~~GADi 217 (300)
.-. |.|.+-++++. =+++||++
T Consensus 62 ---------------vGA------------------GTVl~~~~a~~-------------------------a~~aGA~F 83 (204)
T TIGR01182 62 ---------------IGA------------------GTVLNPEQLRQ-------------------------AVDAGAQF 83 (204)
T ss_pred ---------------EEE------------------EeCCCHHHHHH-------------------------HHHcCCCE
Confidence 111 45555555433 17899999
Q ss_pred eeccCcchHHHHHHHHHhhCCCCCEEeEecccccHHHHHHHhCCCCCHHHHHHHHHHHHHHcCCCEEEecchHHH
Q psy15126 218 LMVKPALPYLDIISEVKSRHPAYPLFVYQVSGEYAMLAFAAQAGALDLKRALMETLTCLRRGGADVIISYYTPRV 292 (300)
Q Consensus 218 vmVkPsmm~ld~Ir~~~d~~~~vpi~aY~vSgeY~~~r~Aa~~~~~n~~eal~E~~~~~~r~GAD~Ii~y~A~~~ 292 (300)
+ |.|.+ --++++..++. ++|.+. |.... -|....+ +.|||+|=++||..+
T Consensus 84 i-vsP~~-~~~v~~~~~~~--~i~~iP----------------G~~Tp----tEi~~A~-~~Ga~~vKlFPA~~~ 133 (204)
T TIGR01182 84 I-VSPGL-TPELAKHAQDH--GIPIIP----------------GVATP----SEIMLAL-ELGITALKLFPAEVS 133 (204)
T ss_pred E-ECCCC-CHHHHHHHHHc--CCcEEC----------------CCCCH----HHHHHHH-HCCCCEEEECCchhc
Confidence 8 89984 34666666653 677665 23344 5677788 799999999997644
No 46
>TIGR02320 PEP_mutase phosphoenolpyruvate phosphomutase. A closely related enzyme, phosphonopyruvate hydrolase from Variovorax sp. Pal2, is excluded from this model.
Probab=91.90 E-value=2.8 Score=40.05 Aligned_cols=68 Identities=19% Similarity=0.247 Sum_probs=36.8
Q ss_pred hhcCCceeeccCc-ch----HHHHHHHHHhhCCCCCEEeEecccccH--HHHHHHhCCC----------CCHHHHHHHHH
Q psy15126 211 VSQGADFLMVKPA-LP----YLDIISEVKSRHPAYPLFVYQVSGEYA--MLAFAAQAGA----------LDLKRALMETL 273 (300)
Q Consensus 211 a~~GADivmVkPs-mm----~ld~Ir~~~d~~~~vpi~aY~vSgeY~--~~r~Aa~~~~----------~n~~eal~E~~ 273 (300)
+++|||+|+|- + .. .....+++...||++|++.- .+.|+ ++..-.++|+ ...-.++.+++
T Consensus 179 ~eAGAD~ifv~-~~~~~~~ei~~~~~~~~~~~p~~pl~~~--~~~~~~~~~~eL~~lG~~~v~~~~~~~~aa~~a~~~~~ 255 (285)
T TIGR02320 179 AEAGADGIMIH-SRKKDPDEILEFARRFRNHYPRTPLVIV--PTSYYTTPTDEFRDAGISVVIYANHLLRAAYAAMQQVA 255 (285)
T ss_pred HHcCCCEEEec-CCCCCHHHHHHHHHHhhhhCCCCCEEEe--cCCCCCCCHHHHHHcCCCEEEEhHHHHHHHHHHHHHHH
Confidence 79999999985 2 22 23333333444778999853 23333 3444444441 12234555666
Q ss_pred HHHHHcCC
Q psy15126 274 TCLRRGGA 281 (300)
Q Consensus 274 ~~~~r~GA 281 (300)
..+++.|-
T Consensus 256 ~~~~~~g~ 263 (285)
T TIGR02320 256 ERILEHGR 263 (285)
T ss_pred HHHHHcCC
Confidence 66655553
No 47
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=91.72 E-value=8.9 Score=34.14 Aligned_cols=42 Identities=19% Similarity=0.353 Sum_probs=29.1
Q ss_pred hhcCCceeeccCc--ch----HHHHHHHHHhhCCCCCEEeEecccccHH
Q psy15126 211 VSQGADFLMVKPA--LP----YLDIISEVKSRHPAYPLFVYQVSGEYAM 253 (300)
Q Consensus 211 a~~GADivmVkPs--mm----~ld~Ir~~~d~~~~vpi~aY~vSgeY~~ 253 (300)
.+.|+|.|.++++ .+ .-..++.+++.++++|+- ++.---+|+
T Consensus 156 ~~~g~~~i~l~Dt~G~~~P~~v~~li~~l~~~~~~~~~~-~H~Hn~~gl 203 (265)
T cd03174 156 EEAGADEISLKDTVGLATPEEVAELVKALREALPDVPLG-LHTHNTLGL 203 (265)
T ss_pred HHcCCCEEEechhcCCcCHHHHHHHHHHHHHhCCCCeEE-EEeCCCCCh
Confidence 5789999999887 22 577788888888776665 444333333
No 48
>PRK07028 bifunctional hexulose-6-phosphate synthase/ribonuclease regulator; Validated
Probab=91.55 E-value=3.1 Score=41.00 Aligned_cols=63 Identities=27% Similarity=0.292 Sum_probs=41.4
Q ss_pred HHHHHHHHHhCCCcEEEeeecCCCCCCCCcceeeCCCCceecHHhHHHHHHHHHHHHHcCCCccc-cCCCCcchHHHHHH
Q psy15126 19 FQVIPMIRKQFPSLTIACDVCLCGYTSHGHCAIFNEDGSIHYEKTLKRLADISKAFSDAGAHIVA-PSDMMDNRIHAIKQ 97 (300)
Q Consensus 19 ~~~i~~ik~~~p~l~i~~Dvclc~yt~hGHcgi~~~~g~i~nd~Tl~~l~~~A~~~A~aGad~vA-PSdmMDgrv~air~ 97 (300)
.++|+.|++.+++..|+.|+-+.-- |.. .+..++++|++.|. |...-+..+...++
T Consensus 45 ~~~i~~l~~~~~~~~ii~D~kl~d~------------g~~-----------~v~~a~~aGAdgV~v~g~~~~~~~~~~i~ 101 (430)
T PRK07028 45 MNAIRTLRKNFPDHTIVADMKTMDT------------GAI-----------EVEMAAKAGADIVCILGLADDSTIEDAVR 101 (430)
T ss_pred HHHHHHHHHHCCCCEEEEEeeeccc------------hHH-----------HHHHHHHcCCCEEEEecCCChHHHHHHHH
Confidence 6889999999998889898766321 211 44557889999877 43322234555556
Q ss_pred HHhhCCC
Q psy15126 98 SLFTSRQ 104 (300)
Q Consensus 98 aLd~~g~ 104 (300)
...+.|.
T Consensus 102 ~a~~~G~ 108 (430)
T PRK07028 102 AARKYGV 108 (430)
T ss_pred HHHHcCC
Confidence 6656665
No 49
>cd00945 Aldolase_Class_I Class I aldolases. The class I aldolases use an active-site lysine which stablilzes a reaction intermediates via Schiff base formation, and have TIM beta/alpha barrel fold. The members of this family include 2-keto-3-deoxy-6-phosphogluconate (KDPG) and 2-keto-4-hydroxyglutarate (KHG) aldolases, transaldolase, dihydrodipicolinate synthase sub-family, Type I 3-dehydroquinate dehydratase, DeoC and DhnA proteins, and metal-independent fructose-1,6-bisphosphate aldolase. Although structurally similar, the class II aldolases use a different mechanism and are believed to have an independent evolutionary origin.
Probab=91.29 E-value=2.9 Score=34.84 Aligned_cols=38 Identities=26% Similarity=0.247 Sum_probs=28.0
Q ss_pred hhcCCceeeccCcch---------HHHHHHHHHhhC-CCCCEEeEecc
Q psy15126 211 VSQGADFLMVKPALP---------YLDIISEVKSRH-PAYPLFVYQVS 248 (300)
Q Consensus 211 a~~GADivmVkPsmm---------~ld~Ir~~~d~~-~~vpi~aY~vS 248 (300)
.+.|||.+++-|..- -++.++++.+.. .+.|++.|..-
T Consensus 75 ~~~Gad~i~v~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~pv~iy~~p 122 (201)
T cd00945 75 IDLGADEIDVVINIGSLKEGDWEEVLEEIAAVVEAADGGLPLKVILET 122 (201)
T ss_pred HHcCCCEEEEeccHHHHhCCCHHHHHHHHHHHHHHhcCCceEEEEEEC
Confidence 578999999876532 156777777763 47999999873
No 50
>cd00452 KDPG_aldolase KDPG and KHG aldolase. This family belongs to the class I adolases whose reaction mechanism involves Schiff base formation between a substrate carbonyl and lysine residue in the active site. 2-keto-3-deoxy-6-phosphogluconate (KDPG) aldolase, is best known for its role in the Entner-Doudoroff pathway of bacteria, where it catalyzes the reversible cleavage of KDPG to pyruvate and glyceraldehyde-3-phosphate. 2-keto-4-hydroxyglutarate (KHG) aldolase, which has enzymatic specificity toward glyoxylate, forming KHG in the presence of pyruvate, and is capable of regulating glyoxylate levels in the glyoxylate bypass, an alternate pathway when bacteria are grown on acetate carbon sources.
Probab=91.08 E-value=3.6 Score=35.98 Aligned_cols=60 Identities=18% Similarity=0.176 Sum_probs=42.9
Q ss_pred hhcCCceeeccCcch-HHHHHHHHHhhCCCCCEEeEecccccHHHHHHHhCCCCCHHHHHHHHHHHHHHcCCCEEEecch
Q psy15126 211 VSQGADFLMVKPALP-YLDIISEVKSRHPAYPLFVYQVSGEYAMLAFAAQAGALDLKRALMETLTCLRRGGADVIISYYT 289 (300)
Q Consensus 211 a~~GADivmVkPsmm-~ld~Ir~~~d~~~~vpi~aY~vSgeY~~~r~Aa~~~~~n~~eal~E~~~~~~r~GAD~Ii~y~A 289 (300)
.++|||+|.+-|.-+ -.+.+++++..+|++|+++= |-++. |-+..+...|||.|-+-.+
T Consensus 114 ~~~Gad~i~~~p~~~~g~~~~~~l~~~~~~~p~~a~---------------GGI~~-----~n~~~~~~~G~~~v~v~s~ 173 (190)
T cd00452 114 LELGADIVKLFPAEAVGPAYIKALKGPFPQVRFMPT---------------GGVSL-----DNAAEWLAAGVVAVGGGSL 173 (190)
T ss_pred HHCCCCEEEEcCCcccCHHHHHHHHhhCCCCeEEEe---------------CCCCH-----HHHHHHHHCCCEEEEEchh
Confidence 579999999988733 56778888777888998875 22444 3344555789999877655
Q ss_pred H
Q psy15126 290 P 290 (300)
Q Consensus 290 ~ 290 (300)
.
T Consensus 174 i 174 (190)
T cd00452 174 L 174 (190)
T ss_pred c
Confidence 3
No 51
>PF00701 DHDPS: Dihydrodipicolinate synthetase family; InterPro: IPR002220 Dihydropicolinate synthase (DHDPS) is the key enzyme in lysine biosynthesis via the diaminopimelate pathway of prokaryotes, some phycomycetes and higher plants. The enzyme catalyses the condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a ping-pong mechanism in which pyruvate binds to the enzyme by forming a Schiff-base with a lysine residue []. Three other proteins are structurally related to DHDPS and probably also act via a similar catalytic mechanism. These are Escherichia coli N-acetylneuraminate lyase (4.1.3.3 from EC) (gene nanA), which catalyzes the condensation of N-acetyl-D-mannosamine and pyruvate to form N-acetylneuraminate; Rhizobium meliloti (Sinorhizobium meliloti) protein mosA [], which is involved in the biosynthesis of the rhizopine 3-o-methyl-scyllo-inosamine; and E. coli hypothetical protein yjhH. The sequences of DHDPS from different sources are well-conserved. The structure takes the form of a homotetramer, in which 2 monomers are related by an approximate 2-fold symmetry []. Each monomer comprises 2 domains: an 8-fold alpha-/beta-barrel, and a C-terminal alpha-helical domain. The fold resembles that of N-acetylneuraminate lyase. The active site lysine is located in the barrel domain, and has access via 2 channels on the C-terminal side of the barrel.; GO: 0016829 lyase activity, 0008152 metabolic process; PDB: 3B4U_B 3S8H_A 3QZE_B 1XXX_F 3L21_F 3IRD_A 3A5F_B 3G0S_B 3DAQ_C 3UQN_A ....
Probab=90.93 E-value=2.1 Score=39.57 Aligned_cols=82 Identities=22% Similarity=0.273 Sum_probs=52.8
Q ss_pred ccCCCcccchHhHHHHHHHHHhhhcccccCCCCCccccchhhhcCCceeeccCc------ch---HHHHHHHHHhh-CCC
Q psy15126 170 FNEDGSIHYEKTLKRLADISKAFSDAVYVPNHNTDRFQARDVSQGADFLMVKPA------LP---YLDIISEVKSR-HPA 239 (300)
Q Consensus 170 ~~~~g~i~nd~tl~~l~~~a~~~a~~~~~~~~n~~~~~~~Da~~GADivmVkPs------mm---~ld~Ir~~~d~-~~~ 239 (300)
|++||+|+.+.+-+.+-.. +++|.|-|+|.-+ |. +..+++.+.+. -.+
T Consensus 13 f~~dg~id~~~~~~~i~~l----------------------~~~Gv~gl~~~GstGE~~~Lt~~Er~~l~~~~~~~~~~~ 70 (289)
T PF00701_consen 13 FNADGSIDEDALKRLIDFL----------------------IEAGVDGLVVLGSTGEFYSLTDEERKELLEIVVEAAAGR 70 (289)
T ss_dssp BETTSSB-HHHHHHHHHHH----------------------HHTTSSEEEESSTTTTGGGS-HHHHHHHHHHHHHHHTTS
T ss_pred CCCCcCcCHHHHHHHHHHH----------------------HHcCCCEEEECCCCcccccCCHHHHHHHHHHHHHHccCc
Confidence 4678998776665544333 6889999988654 11 78888888776 457
Q ss_pred CCEEeEecccccHHHHHHHhCCCCCHHHHHHHHHHHHHHcCCCEEEecc
Q psy15126 240 YPLFVYQVSGEYAMLAFAAQAGALDLKRALMETLTCLRRGGADVIISYY 288 (300)
Q Consensus 240 vpi~aY~vSgeY~~~r~Aa~~~~~n~~eal~E~~~~~~r~GAD~Ii~y~ 288 (300)
+||++= +++ .+.++++.. .+..++.|||.+|+-|
T Consensus 71 ~~vi~g-v~~-------------~st~~~i~~-a~~a~~~Gad~v~v~~ 104 (289)
T PF00701_consen 71 VPVIAG-VGA-------------NSTEEAIEL-ARHAQDAGADAVLVIP 104 (289)
T ss_dssp SEEEEE-EES-------------SSHHHHHHH-HHHHHHTT-SEEEEEE
T ss_pred eEEEec-Ccc-------------hhHHHHHHH-HHHHhhcCceEEEEec
Confidence 999984 532 255666444 4444578999887643
No 52
>PRK13307 bifunctional formaldehyde-activating enzyme/3-hexulose-6-phosphate synthase; Provisional
Probab=90.80 E-value=4.8 Score=40.33 Aligned_cols=63 Identities=22% Similarity=0.232 Sum_probs=44.9
Q ss_pred HHHHHHHHHhCCCcEEEeeecCCCCCCCCcceeeCCCCceecHHhHHHHHHHHHHHHHcCCCccccCCCCc-chHHHHHH
Q psy15126 19 FQVIPMIRKQFPSLTIACDVCLCGYTSHGHCAIFNEDGSIHYEKTLKRLADISKAFSDAGAHIVAPSDMMD-NRIHAIKQ 97 (300)
Q Consensus 19 ~~~i~~ik~~~p~l~i~~Dvclc~yt~hGHcgi~~~~g~i~nd~Tl~~l~~~A~~~A~aGad~vAPSdmMD-grv~air~ 97 (300)
.+.|+.||+.+|+..|.+|.-+. |. + .++ +..++++|+|++.-..... ..+....+
T Consensus 214 ~~iVk~Lr~~~~~~~I~~DLK~~-----------Di-~-----~~v------v~~~a~aGAD~vTVH~ea~~~ti~~ai~ 270 (391)
T PRK13307 214 LEVISKIREVRPDAFIVADLKTL-----------DT-G-----NLE------ARMAADATADAVVISGLAPISTIEKAIH 270 (391)
T ss_pred HHHHHHHHHhCCCCeEEEEeccc-----------Ch-h-----hHH------HHHHHhcCCCEEEEeccCCHHHHHHHHH
Confidence 46799999999999999998763 21 2 222 5568899999998865433 24666667
Q ss_pred HHhhCCC
Q psy15126 98 SLFTSRQ 104 (300)
Q Consensus 98 aLd~~g~ 104 (300)
...+.|.
T Consensus 271 ~akk~Gi 277 (391)
T PRK13307 271 EAQKTGI 277 (391)
T ss_pred HHHHcCC
Confidence 7767776
No 53
>PRK07534 methionine synthase I; Validated
Probab=90.61 E-value=15 Score=35.86 Aligned_cols=82 Identities=10% Similarity=0.062 Sum_probs=54.4
Q ss_pred ChHHHHHHHHHHhC----CCcEEEeeecCCCCCCCCcceeeCCCCceecHHhHHHHHHHHHHHHHcCCCccccCCCCcch
Q psy15126 16 NPLFQVIPMIRKQF----PSLTIACDVCLCGYTSHGHCAIFNEDGSIHYEKTLKRLADISKAFSDAGAHIVAPSDMMDNR 91 (300)
Q Consensus 16 ~~~~~~i~~ik~~~----p~l~i~~Dvclc~yt~hGHcgi~~~~g~i~nd~Tl~~l~~~A~~~A~aGad~vAPSdmMDgr 91 (300)
.+..++++..|+.. .+..|+.++ .||...-+ ..|.+..+.-.+...+|+..+.++|+|++.--.|.+-.
T Consensus 85 ~l~~~av~lAr~a~~~~~~~~~VaGsI--GP~g~~l~-----~~~~~~~~e~~~~~~~qi~~l~~~gvD~l~~ET~p~l~ 157 (336)
T PRK07534 85 ELNRAAAEIAREVADKAGRKVIVAGSV--GPTGEIME-----PMGALTHALAVEAFHEQAEGLKAGGADVLWVETISAPE 157 (336)
T ss_pred HHHHHHHHHHHHHHHhcCCccEEEEec--CCCccccC-----CCCCCCHHHHHHHHHHHHHHHHhCCCCEEEEeccCCHH
Confidence 35566777777664 247788875 46655422 23456667778888899999999999999997776633
Q ss_pred -HHHHHHHHhhCCC
Q psy15126 92 -IHAIKQSLFTSRQ 104 (300)
Q Consensus 92 -v~air~aLd~~g~ 104 (300)
..++.+++.+.+.
T Consensus 158 E~~a~~~~~~~~~~ 171 (336)
T PRK07534 158 EIRAAAEAAKLAGM 171 (336)
T ss_pred HHHHHHHHHHHcCC
Confidence 3445555544333
No 54
>TIGR00674 dapA dihydrodipicolinate synthase. Dihydrodipicolinate synthase is a homotetrameric enzyme of lysine biosynthesis. E. coli has several paralogs closely related to dihydrodipicoline synthase (DapA), as well as the more distant N-acetylneuraminate lyase. In Pyrococcus horikoshii, the bidirectional best hit with E. coli is to an uncharacterized paralog of DapA, not DapA itself, and it is omitted from the seed. The putative members from the Chlamydias (pathogens with a parasitic metabolism) are easily the most divergent members of the multiple alignment.
Probab=90.42 E-value=2.8 Score=38.88 Aligned_cols=82 Identities=24% Similarity=0.289 Sum_probs=51.5
Q ss_pred ccCCCcccchHhHHHHHHHHHhhhcccccCCCCCccccchhhhcCCceeecc------Ccch---HHHHHHHHHhh-CCC
Q psy15126 170 FNEDGSIHYEKTLKRLADISKAFSDAVYVPNHNTDRFQARDVSQGADFLMVK------PALP---YLDIISEVKSR-HPA 239 (300)
Q Consensus 170 ~~~~g~i~nd~tl~~l~~~a~~~a~~~~~~~~n~~~~~~~Da~~GADivmVk------Psmm---~ld~Ir~~~d~-~~~ 239 (300)
|++||+|+.+.+-+.+... ++.|+|-|.+. ++|. |..+++.+.+. -.+
T Consensus 10 f~~~g~iD~~~~~~~i~~l----------------------~~~Gv~Gi~~~GstGE~~~Ls~~Er~~~~~~~~~~~~~~ 67 (285)
T TIGR00674 10 FKEDGSVDFAALEKLIDFQ----------------------IENGTDAIVVVGTTGESPTLSHEEHKKVIEFVVDLVNGR 67 (285)
T ss_pred cCCCCCcCHHHHHHHHHHH----------------------HHcCCCEEEECccCcccccCCHHHHHHHHHHHHHHhCCC
Confidence 4677888887775555444 67899998764 3332 78888877776 345
Q ss_pred CCEEeEecccccHHHHHHHhCCCCCHHHHHHHHHHHHHHcCCCEEEecc
Q psy15126 240 YPLFVYQVSGEYAMLAFAAQAGALDLKRALMETLTCLRRGGADVIISYY 288 (300)
Q Consensus 240 vpi~aY~vSgeY~~~r~Aa~~~~~n~~eal~E~~~~~~r~GAD~Ii~y~ 288 (300)
+||++- | +..+.++++..+.... +.|||.||+-|
T Consensus 68 ~~vi~g-v-------------~~~s~~~~i~~a~~a~-~~Gad~v~v~p 101 (285)
T TIGR00674 68 VPVIAG-T-------------GSNATEEAISLTKFAE-DVGADGFLVVT 101 (285)
T ss_pred CeEEEe-C-------------CCccHHHHHHHHHHHH-HcCCCEEEEcC
Confidence 888865 2 2224455544444433 67777777654
No 55
>TIGR02319 CPEP_Pphonmut carboxyvinyl-carboxyphosphonate phosphorylmutase. This family consists of carboxyvinyl-carboxyphosphonate phosphorylmutase (CPEP phosphonomutase), an unusual enzyme involved in the biosynthesis of the antibiotic bialaphos. So far, it is known only in that pathway and only in Streptomyces hygroscopicus. Some related proteins annotated as being functionally equivalent are likely misannotated examples of methylisocitrate lyase, an enzyme of priopionate utilization.
Probab=90.37 E-value=1 Score=43.30 Aligned_cols=69 Identities=22% Similarity=0.313 Sum_probs=49.7
Q ss_pred hhcCCceeeccCcchHHHHHHHHHhhCCCCCEEe-EecccccH--HHHHHHhCCC----------CCHHHHHHHHHHHHH
Q psy15126 211 VSQGADFLMVKPALPYLDIISEVKSRHPAYPLFV-YQVSGEYA--MLAFAAQAGA----------LDLKRALMETLTCLR 277 (300)
Q Consensus 211 a~~GADivmVkPsmm~ld~Ir~~~d~~~~vpi~a-Y~vSgeY~--~~r~Aa~~~~----------~n~~eal~E~~~~~~ 277 (300)
+++|||+|+| |+..-.+.|+++.++. +.|++. .-..+.+. .++.-.++|+ ...-.++++.+..++
T Consensus 175 ~eAGAD~ifi-~~~~~~~ei~~~~~~~-~~P~~~nv~~~~~~p~~s~~eL~~lG~~~v~~~~~~~~aa~~a~~~~~~~l~ 252 (294)
T TIGR02319 175 VAAGADCIFL-EAMLDVEEMKRVRDEI-DAPLLANMVEGGKTPWLTTKELESIGYNLAIYPLSGWMAAASVLRKLFTELR 252 (294)
T ss_pred HHhCCCEEEe-cCCCCHHHHHHHHHhc-CCCeeEEEEecCCCCCCCHHHHHHcCCcEEEEcHHHHHHHHHHHHHHHHHHH
Confidence 7999999988 7777788899988886 578754 22244544 4666666652 345678889999998
Q ss_pred HcCC
Q psy15126 278 RGGA 281 (300)
Q Consensus 278 r~GA 281 (300)
+.|-
T Consensus 253 ~~G~ 256 (294)
T TIGR02319 253 EAGT 256 (294)
T ss_pred HcCC
Confidence 7775
No 56
>PRK04147 N-acetylneuraminate lyase; Provisional
Probab=90.19 E-value=3 Score=38.88 Aligned_cols=82 Identities=23% Similarity=0.215 Sum_probs=54.4
Q ss_pred ccCCCcccchHhHHHHHHHHHhhhcccccCCCCCccccchhhh-cCCceeeccCc------ch---HHHHHHHHHhhC-C
Q psy15126 170 FNEDGSIHYEKTLKRLADISKAFSDAVYVPNHNTDRFQARDVS-QGADFLMVKPA------LP---YLDIISEVKSRH-P 238 (300)
Q Consensus 170 ~~~~g~i~nd~tl~~l~~~a~~~a~~~~~~~~n~~~~~~~Da~-~GADivmVkPs------mm---~ld~Ir~~~d~~-~ 238 (300)
|++||+|+.+.+-+.+... ++ +|++-|+|.=+ |. +..+++.+.+.. .
T Consensus 15 f~~dg~iD~~~~~~li~~l----------------------~~~~Gv~gi~v~GstGE~~~Ls~eEr~~~~~~~~~~~~~ 72 (293)
T PRK04147 15 FDEDGQIDEQGLRRLVRFN----------------------IEKQGIDGLYVGGSTGEAFLLSTEEKKQVLEIVAEEAKG 72 (293)
T ss_pred CCCCCCcCHHHHHHHHHHH----------------------HhcCCCCEEEECCCccccccCCHHHHHHHHHHHHHHhCC
Confidence 5778998888775554443 67 89998877654 21 788888888763 3
Q ss_pred CCCEEeEecccccHHHHHHHhCCCCCHHHHHHHHHHHHHHcCCCEEEecc
Q psy15126 239 AYPLFVYQVSGEYAMLAFAAQAGALDLKRALMETLTCLRRGGADVIISYY 288 (300)
Q Consensus 239 ~vpi~aY~vSgeY~~~r~Aa~~~~~n~~eal~E~~~~~~r~GAD~Ii~y~ 288 (300)
++||++= + |..+.++++..+-... +.|||.|++-|
T Consensus 73 ~~~viag-v-------------g~~~t~~ai~~a~~a~-~~Gad~v~v~~ 107 (293)
T PRK04147 73 KVKLIAQ-V-------------GSVNTAEAQELAKYAT-ELGYDAISAVT 107 (293)
T ss_pred CCCEEec-C-------------CCCCHHHHHHHHHHHH-HcCCCEEEEeC
Confidence 5898874 3 2335666654444444 68888888765
No 57
>PRK00278 trpC indole-3-glycerol-phosphate synthase; Reviewed
Probab=89.98 E-value=11 Score=35.27 Aligned_cols=158 Identities=18% Similarity=0.264 Sum_probs=95.8
Q ss_pred HHHHHHHHHHcCCCccccCCC---CcchHHHHHHHHhhCCCCCCcccccchhhhhcccchhhhhhhcCCCCCCCcceeeC
Q psy15126 67 LADISKAFSDAGAHIVAPSDM---MDNRIHAIKQSLFTSRQSSTTGLLSYSAKFCSAFYGPFREAAGSAPTFGDRSCYQL 143 (300)
Q Consensus 67 l~~~A~~~A~aGad~vAPSdm---MDgrv~air~aLd~~g~~~~v~ImsysaK~aS~~YGPfRda~gS~~~~gdr~~yQ~ 143 (300)
.+++|..+.++||+.+....- -.|-...++..=.. .+++|+- |. |-= -.||+
T Consensus 72 ~~~~A~~~~~~GA~aisvlte~~~f~g~~~~l~~v~~~----v~iPvl~---kd---fi~---------------~~~qi 126 (260)
T PRK00278 72 PVEIAKAYEAGGAACLSVLTDERFFQGSLEYLRAARAA----VSLPVLR---KD---FII---------------DPYQI 126 (260)
T ss_pred HHHHHHHHHhCCCeEEEEecccccCCCCHHHHHHHHHh----cCCCEEe---ee---ecC---------------CHHHH
Confidence 468889999999999987333 33666666655332 3567772 22 111 11222
Q ss_pred C----CCCCceEEEEeecccCCCCCCccccccCCCcccchHhHHHHHHHHHhhhcccccCCCCCccccchhhhcCCceee
Q psy15126 144 P----CGSKGLAIRAAVCLCGYTSHGHCAIFNEDGSIHYEKTLKRLADISKAFSDAVYVPNHNTDRFQARDVSQGADFLM 219 (300)
Q Consensus 144 ~----~~~~~~ai~~dvclc~yt~hGHcgi~~~~g~i~nd~tl~~l~~~a~~~a~~~~~~~~n~~~~~~~Da~~GADivm 219 (300)
. .+..-+.+.. ....+++++.|.+.+..+---+.|+.||...... =.+.|||+|.
T Consensus 127 ~~a~~~GAD~VlLi~--------------------~~l~~~~l~~li~~a~~lGl~~lvevh~~~E~~~-A~~~gadiIg 185 (260)
T PRK00278 127 YEARAAGADAILLIV--------------------AALDDEQLKELLDYAHSLGLDVLVEVHDEEELER-ALKLGAPLIG 185 (260)
T ss_pred HHHHHcCCCEEEEEe--------------------ccCCHHHHHHHHHHHHHcCCeEEEEeCCHHHHHH-HHHcCCCEEE
Confidence 2 1112233332 2345689999999999987778888999876633 3568999998
Q ss_pred ccCcc-----hHHHHHHHHHhhCCC-CCEEeEecccccHHHHHHHhCCCCCHHHHHHHHHHHHHHcCCCEEEecch
Q psy15126 220 VKPAL-----PYLDIISEVKSRHPA-YPLFVYQVSGEYAMLAFAAQAGALDLKRALMETLTCLRRGGADVIISYYT 289 (300)
Q Consensus 220 VkPsm-----m~ld~Ir~~~d~~~~-vpi~aY~vSgeY~~~r~Aa~~~~~n~~eal~E~~~~~~r~GAD~Ii~y~A 289 (300)
|-|-. .-++..+++....|+ .|+.+ .|| ..+.+ -+..+++.|||.+++--+
T Consensus 186 in~rdl~~~~~d~~~~~~l~~~~p~~~~vIa--egG------------I~t~e-----d~~~~~~~Gad~vlVGsa 242 (260)
T PRK00278 186 INNRNLKTFEVDLETTERLAPLIPSDRLVVS--ESG------------IFTPE-----DLKRLAKAGADAVLVGES 242 (260)
T ss_pred ECCCCcccccCCHHHHHHHHHhCCCCCEEEE--EeC------------CCCHH-----HHHHHHHcCCCEEEECHH
Confidence 88721 146666777666554 35444 243 33332 223444679999887544
No 58
>PRK06843 inosine 5-monophosphate dehydrogenase; Validated
Probab=89.79 E-value=1.1 Score=45.15 Aligned_cols=58 Identities=19% Similarity=0.284 Sum_probs=41.5
Q ss_pred hhcCCceeeccCc----chHHHHHHHHHhhCCCCCEEeEecccccHHHHHHHhCCCCCHHHHHHHHHHHHHHcCCCEEEe
Q psy15126 211 VSQGADFLMVKPA----LPYLDIISEVKSRHPAYPLFVYQVSGEYAMLAFAAQAGALDLKRALMETLTCLRRGGADVIIS 286 (300)
Q Consensus 211 a~~GADivmVkPs----mm~ld~Ir~~~d~~~~vpi~aY~vSgeY~~~r~Aa~~~~~n~~eal~E~~~~~~r~GAD~Ii~ 286 (300)
+++|+|+|.|--+ ...++.|+++++.+|+++|++=.++ +.+ ..+.+.++|||.|.+
T Consensus 162 v~aGvDvI~iD~a~g~~~~~~~~v~~ik~~~p~~~vi~g~V~---------------T~e-----~a~~l~~aGaD~I~v 221 (404)
T PRK06843 162 VKAHVDILVIDSAHGHSTRIIELVKKIKTKYPNLDLIAGNIV---------------TKE-----AALDLISVGADCLKV 221 (404)
T ss_pred HhcCCCEEEEECCCCCChhHHHHHHHHHhhCCCCcEEEEecC---------------CHH-----HHHHHHHcCCCEEEE
Confidence 7899999964343 3367999999999999999887662 322 222333689999976
Q ss_pred cc
Q psy15126 287 YY 288 (300)
Q Consensus 287 y~ 288 (300)
-+
T Consensus 222 G~ 223 (404)
T PRK06843 222 GI 223 (404)
T ss_pred CC
Confidence 53
No 59
>cd00954 NAL N-Acetylneuraminic acid aldolase, also called N-acetylneuraminate lyase (NAL), which catalyses the reversible aldol reaction of N-acetyl-D-mannosamine and pyruvate to give N-acetyl-D-neuraminic acid (D-sialic acid). It has a widespread application as biocatalyst for the synthesis of sialic acid and its derivatives. This enzyme has been shown to be quite specific for pyruvate as the donor, but flexible to a variety of D- and, to some extent, L-hexoses and pentoses as acceptor substrates. NAL is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases.
Probab=89.77 E-value=3.2 Score=38.63 Aligned_cols=81 Identities=23% Similarity=0.264 Sum_probs=50.8
Q ss_pred ccCCCcccchHhHHHHHHHHHhhhcccccCCCCCccccchhhhc-CCceeeccCc------ch---HHHHHHHHHhh-CC
Q psy15126 170 FNEDGSIHYEKTLKRLADISKAFSDAVYVPNHNTDRFQARDVSQ-GADFLMVKPA------LP---YLDIISEVKSR-HP 238 (300)
Q Consensus 170 ~~~~g~i~nd~tl~~l~~~a~~~a~~~~~~~~n~~~~~~~Da~~-GADivmVkPs------mm---~ld~Ir~~~d~-~~ 238 (300)
|++||+|+.+..-+.+... ++. |++-|+|.=+ |. +..+++.+.+. -.
T Consensus 12 f~~dg~iD~~~~~~~i~~l----------------------~~~~Gv~gi~~~GstGE~~~Lt~~Er~~~~~~~~~~~~~ 69 (288)
T cd00954 12 FDENGEINEDVLRAIVDYL----------------------IEKQGVDGLYVNGSTGEGFLLSVEERKQIAEIVAEAAKG 69 (288)
T ss_pred CCCCCCCCHHHHHHHHHHH----------------------HhcCCCCEEEECcCCcCcccCCHHHHHHHHHHHHHHhCC
Confidence 4677887776664443333 567 9998866533 22 77888877776 23
Q ss_pred CCCEEeEecccccHHHHHHHhCCCCCHHHHHHHHHHHHHHcCCCEEEec
Q psy15126 239 AYPLFVYQVSGEYAMLAFAAQAGALDLKRALMETLTCLRRGGADVIISY 287 (300)
Q Consensus 239 ~vpi~aY~vSgeY~~~r~Aa~~~~~n~~eal~E~~~~~~r~GAD~Ii~y 287 (300)
++||++= +++ .+.++++..+... ++.|||.||+-
T Consensus 70 ~~~viag-v~~-------------~~~~~ai~~a~~a-~~~Gad~v~~~ 103 (288)
T cd00954 70 KVTLIAH-VGS-------------LNLKESQELAKHA-EELGYDAISAI 103 (288)
T ss_pred CCeEEec-cCC-------------CCHHHHHHHHHHH-HHcCCCEEEEe
Confidence 5888873 422 3556665444444 47888888863
No 60
>TIGR02313 HpaI-NOT-DapA 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase. This model represents a subset of the DapA (dihydrodipicolinate synthase) family which has apparently evolved a separate function. The product of DapA, dihydrodipicolinate, results from the non-enzymatic cyclization and dehydration of 6-amino-2,4-dihydroxyhept-2-ene-1,7-dioic acid, which is different from the substrate of this reaction only in the presence of the amino group. In the absence of this amino group, and running the reaction in the opposite direction, the reaction corresponds to the HpaI aldolase component of the 4-hydroxyphenylacetic acid catabolism pathway (see TIGR02311). At present, this variant of DapA is found only in Oceanobacillus iheyensis HTE831 and Thermus thermophilus HB27. In both of these cases, one or more other DapA genes can be found and the one identified by this model is part of an operon for 4-hydroxyphenylacetic acid catabolism.
Probab=89.75 E-value=3.4 Score=38.92 Aligned_cols=82 Identities=21% Similarity=0.225 Sum_probs=52.4
Q ss_pred ccCCCcccchHhHHHHHHHHHhhhcccccCCCCCccccchhhhcCCceeeccCc------ch---HHHHHHHHHhh-CCC
Q psy15126 170 FNEDGSIHYEKTLKRLADISKAFSDAVYVPNHNTDRFQARDVSQGADFLMVKPA------LP---YLDIISEVKSR-HPA 239 (300)
Q Consensus 170 ~~~~g~i~nd~tl~~l~~~a~~~a~~~~~~~~n~~~~~~~Da~~GADivmVkPs------mm---~ld~Ir~~~d~-~~~ 239 (300)
|++||+|+.+..-+.+-.+ ++.|+|-|.|.=+ |. +..+++.+.+. --+
T Consensus 12 f~~dg~iD~~~l~~lv~~~----------------------~~~Gv~gi~v~GstGE~~~Ls~~Er~~l~~~~~~~~~g~ 69 (294)
T TIGR02313 12 FKRNGDIDEEALRELIEFQ----------------------IEGGSHAISVGGTSGEPGSLTLEERKQAIENAIDQIAGR 69 (294)
T ss_pred cCCCCCcCHHHHHHHHHHH----------------------HHcCCCEEEECccCcccccCCHHHHHHHHHHHHHHhCCC
Confidence 5788998877765544333 6789988866433 21 78888888776 335
Q ss_pred CCEEeEecccccHHHHHHHhCCCCCHHHHHHHHHHHHHHcCCCEEEecc
Q psy15126 240 YPLFVYQVSGEYAMLAFAAQAGALDLKRALMETLTCLRRGGADVIISYY 288 (300)
Q Consensus 240 vpi~aY~vSgeY~~~r~Aa~~~~~n~~eal~E~~~~~~r~GAD~Ii~y~ 288 (300)
+||++- | +..+.++++..+-.. .+.|||.+|+-|
T Consensus 70 ~pvi~g-v-------------~~~~t~~ai~~a~~A-~~~Gad~v~v~p 103 (294)
T TIGR02313 70 IPFAPG-T-------------GALNHDETLELTKFA-EEAGADAAMVIV 103 (294)
T ss_pred CcEEEE-C-------------CcchHHHHHHHHHHH-HHcCCCEEEEcC
Confidence 899865 3 223556664444444 367888887755
No 61
>cd00951 KDGDH 5-dehydro-4-deoxyglucarate dehydratase, also called 5-keto-4-deoxy-glucarate dehydratase (KDGDH), which is member of dihydrodipicolinate synthase (DHDPS) family that comprises several pyruvate-dependent class I aldolases. The enzyme is involved in glucarate metabolism, and its mechanism presumbly involves a Schiff-base intermediate similar to members of DHDPS family. While in the case of Pseudomonas sp. 5-dehydro-4-deoxy-D-glucarate is degraded by KDGDH to 2,5-dioxopentanoate, in certain species of Enterobacteriaceae it is degraded instead to pyruvate and glycerate.
Probab=89.74 E-value=3.3 Score=38.69 Aligned_cols=81 Identities=21% Similarity=0.296 Sum_probs=52.6
Q ss_pred ccCCCcccchHhHHHHHHHHHhhhcccccCCCCCccccchhhhcCCceeeccCc------ch---HHHHHHHHHhh-CCC
Q psy15126 170 FNEDGSIHYEKTLKRLADISKAFSDAVYVPNHNTDRFQARDVSQGADFLMVKPA------LP---YLDIISEVKSR-HPA 239 (300)
Q Consensus 170 ~~~~g~i~nd~tl~~l~~~a~~~a~~~~~~~~n~~~~~~~Da~~GADivmVkPs------mm---~ld~Ir~~~d~-~~~ 239 (300)
|++||+|+-+..-+.+... ++.|+|-|.|.=| |. +..+++.+.+. -.+
T Consensus 12 f~~dg~iD~~~l~~l~~~l----------------------~~~Gv~gi~v~GstGE~~~Ls~eEr~~l~~~~~~~~~~~ 69 (289)
T cd00951 12 FDADGSFDEDAYRAHVEWL----------------------LSYGAAALFAAGGTGEFFSLTPDEYAQVVRAAVEETAGR 69 (289)
T ss_pred CCCCCCcCHHHHHHHHHHH----------------------HHcCCCEEEECcCCcCcccCCHHHHHHHHHHHHHHhCCC
Confidence 4778888887764443333 6789988866543 21 78888888876 346
Q ss_pred CCEEeEecccccHHHHHHHhCCCCCHHHHHHHHHHHHHHcCCCEEEecc
Q psy15126 240 YPLFVYQVSGEYAMLAFAAQAGALDLKRALMETLTCLRRGGADVIISYY 288 (300)
Q Consensus 240 vpi~aY~vSgeY~~~r~Aa~~~~~n~~eal~E~~~~~~r~GAD~Ii~y~ 288 (300)
+||++- + +. +.+++ .|..+..++.|||.+|+-|
T Consensus 70 ~pvi~g-v-------------~~-~t~~~-i~~a~~a~~~Gad~v~~~p 102 (289)
T cd00951 70 VPVLAG-A-------------GY-GTATA-IAYAQAAEKAGADGILLLP 102 (289)
T ss_pred CCEEEe-c-------------CC-CHHHH-HHHHHHHHHhCCCEEEECC
Confidence 999974 3 22 44555 3444455578888887754
No 62
>cd00408 DHDPS-like Dihydrodipicolinate synthase family. A member of the class I aldolases, which use an active-site lysine which stablilzes a reaction intermediate via Schiff base formation, and have TIM beta/alpha barrel fold. The dihydrodipicolinate synthase family comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways and includes such proteins as N-acetylneuraminate lyase, MosA protein, 5-keto-4-deoxy-glucarate dehydratase, trans-o-hydroxybenzylidenepyruvate hydratase-aldolase, trans-2'-carboxybenzalpyruvate hydratase-aldolase, and 2-keto-3-deoxy- gluconate aldolase. The family is also referred to as the N-acetylneuraminate lyase (NAL) family.
Probab=89.27 E-value=4.4 Score=37.04 Aligned_cols=82 Identities=22% Similarity=0.292 Sum_probs=53.0
Q ss_pred ccCCCcccchHhHHHHHHHHHhhhcccccCCCCCccccchhhhcCCceeeccCc------ch---HHHHHHHHHhh-CCC
Q psy15126 170 FNEDGSIHYEKTLKRLADISKAFSDAVYVPNHNTDRFQARDVSQGADFLMVKPA------LP---YLDIISEVKSR-HPA 239 (300)
Q Consensus 170 ~~~~g~i~nd~tl~~l~~~a~~~a~~~~~~~~n~~~~~~~Da~~GADivmVkPs------mm---~ld~Ir~~~d~-~~~ 239 (300)
|++||+|+.|..-+.+... ++.|+|-|.|.=+ +. +..+++.+.+. -.+
T Consensus 9 f~~dg~iD~~~~~~~i~~l----------------------~~~Gv~gi~~~GstGE~~~ls~~Er~~l~~~~~~~~~~~ 66 (281)
T cd00408 9 FTADGEVDLDALRRLVEFL----------------------IEAGVDGLVVLGTTGEAPTLTDEERKEVIEAVVEAVAGR 66 (281)
T ss_pred cCCCCCcCHHHHHHHHHHH----------------------HHcCCCEEEECCCCcccccCCHHHHHHHHHHHHHHhCCC
Confidence 5778888888876665544 6778888865433 11 77888888776 236
Q ss_pred CCEEeEecccccHHHHHHHhCCCCCHHHHHHHHHHHHHHcCCCEEEecc
Q psy15126 240 YPLFVYQVSGEYAMLAFAAQAGALDLKRALMETLTCLRRGGADVIISYY 288 (300)
Q Consensus 240 vpi~aY~vSgeY~~~r~Aa~~~~~n~~eal~E~~~~~~r~GAD~Ii~y~ 288 (300)
+||++- + +..+.++++..+- ..++.|||.||+-|
T Consensus 67 ~~vi~g-v-------------~~~~~~~~i~~a~-~a~~~Gad~v~v~p 100 (281)
T cd00408 67 VPVIAG-V-------------GANSTREAIELAR-HAEEAGADGVLVVP 100 (281)
T ss_pred CeEEEe-c-------------CCccHHHHHHHHH-HHHHcCCCEEEECC
Confidence 898865 3 2234455544444 44468888888765
No 63
>PRK03620 5-dehydro-4-deoxyglucarate dehydratase; Provisional
Probab=89.26 E-value=3.9 Score=38.59 Aligned_cols=81 Identities=21% Similarity=0.312 Sum_probs=49.4
Q ss_pred ccCCCcccchHhHHHHHHHHHhhhcccccCCCCCccccchhhhcCCceeeccCc------ch---HHHHHHHHHhh-CCC
Q psy15126 170 FNEDGSIHYEKTLKRLADISKAFSDAVYVPNHNTDRFQARDVSQGADFLMVKPA------LP---YLDIISEVKSR-HPA 239 (300)
Q Consensus 170 ~~~~g~i~nd~tl~~l~~~a~~~a~~~~~~~~n~~~~~~~Da~~GADivmVkPs------mm---~ld~Ir~~~d~-~~~ 239 (300)
|++||+|+.+.. +++.+- + ++.|+|-|.|.=+ |. +..+++.+.+. -.+
T Consensus 19 f~~dg~iD~~~l-~~li~~---l------------------~~~Gv~Gi~~~GstGE~~~Lt~eEr~~~~~~~~~~~~~~ 76 (303)
T PRK03620 19 FDADGSFDEAAY-REHLEW---L------------------APYGAAALFAAGGTGEFFSLTPDEYSQVVRAAVETTAGR 76 (303)
T ss_pred CCCCCCcCHHHH-HHHHHH---H------------------HHcCCCEEEECcCCcCcccCCHHHHHHHHHHHHHHhCCC
Confidence 467888888775 443332 1 5789998866433 21 78888888776 346
Q ss_pred CCEEeEecccccHHHHHHHhCCCCCHHHHHHHHHHHHHHcCCCEEEecc
Q psy15126 240 YPLFVYQVSGEYAMLAFAAQAGALDLKRALMETLTCLRRGGADVIISYY 288 (300)
Q Consensus 240 vpi~aY~vSgeY~~~r~Aa~~~~~n~~eal~E~~~~~~r~GAD~Ii~y~ 288 (300)
+||++ +|+ . +.++++ |..+..++.|||.+|+.|
T Consensus 77 ~pvi~-gv~-------------~-~t~~~i-~~~~~a~~~Gadav~~~p 109 (303)
T PRK03620 77 VPVIA-GAG-------------G-GTAQAI-EYAQAAERAGADGILLLP 109 (303)
T ss_pred CcEEE-ecC-------------C-CHHHHH-HHHHHHHHhCCCEEEECC
Confidence 99997 442 1 333433 333334467777777644
No 64
>PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=88.66 E-value=7 Score=35.83 Aligned_cols=120 Identities=16% Similarity=0.241 Sum_probs=81.0
Q ss_pred ecHHhHHHHHHHHHHHHHcCCCccccCCCCcchHHHHHHHHhhCCCCCCcccccchhhhhcccchhhhhhhcCCCCCCCc
Q psy15126 59 HYEKTLKRLADISKAFSDAGAHIVAPSDMMDNRIHAIKQSLFTSRQSSTTGLLSYSAKFCSAFYGPFREAAGSAPTFGDR 138 (300)
Q Consensus 59 ~nd~Tl~~l~~~A~~~A~aGad~vAPSdmMDgrv~air~aLd~~g~~~~v~ImsysaK~aS~~YGPfRda~gS~~~~gdr 138 (300)
..-.+.+...+++..+.+.|+.+|-..---++-.+.|++.-.. + .++
T Consensus 10 ir~~~~~~a~~ia~al~~gGi~~iEit~~tp~a~~~I~~l~~~--~-~~~------------------------------ 56 (201)
T PRK06015 10 LLIDDVEHAVPLARALAAGGLPAIEITLRTPAALDAIRAVAAE--V-EEA------------------------------ 56 (201)
T ss_pred EEcCCHHHHHHHHHHHHHCCCCEEEEeCCCccHHHHHHHHHHH--C-CCC------------------------------
Confidence 3345788899999999999999999877777777777664222 2 111
Q ss_pred ceeeCCCCCCceEEEEeecccCCCCCCccccccCCCcccchHhHHHHHHHHHhhhcccccCCCCCccccchhhhcCCcee
Q psy15126 139 SCYQLPCGSKGLAIRAAVCLCGYTSHGHCAIFNEDGSIHYEKTLKRLADISKAFSDAVYVPNHNTDRFQARDVSQGADFL 218 (300)
Q Consensus 139 ~~yQ~~~~~~~~ai~~dvclc~yt~hGHcgi~~~~g~i~nd~tl~~l~~~a~~~a~~~~~~~~n~~~~~~~Da~~GADiv 218 (300)
+.-. |.|.+-++++. =+++||+++
T Consensus 57 -------------~vGA------------------GTVl~~e~a~~-------------------------ai~aGA~Fi 80 (201)
T PRK06015 57 -------------IVGA------------------GTILNAKQFED-------------------------AAKAGSRFI 80 (201)
T ss_pred -------------EEee------------------EeCcCHHHHHH-------------------------HHHcCCCEE
Confidence 1112 55555555433 178999998
Q ss_pred eccCcchHHHHHHHHHhhCCCCCEEeEecccccHHHHHHHhCCCCCHHHHHHHHHHHHHHcCCCEEEecchHHH
Q psy15126 219 MVKPALPYLDIISEVKSRHPAYPLFVYQVSGEYAMLAFAAQAGALDLKRALMETLTCLRRGGADVIISYYTPRV 292 (300)
Q Consensus 219 mVkPsmm~ld~Ir~~~d~~~~vpi~aY~vSgeY~~~r~Aa~~~~~n~~eal~E~~~~~~r~GAD~Ii~y~A~~~ 292 (300)
|.|. .--++++..++. ++|.+.= .... -|+...+ +.|||+|=+.|+..+
T Consensus 81 -vSP~-~~~~vi~~a~~~--~i~~iPG----------------~~Tp----tEi~~A~-~~Ga~~vK~FPa~~~ 129 (201)
T PRK06015 81 -VSPG-TTQELLAAANDS--DVPLLPG----------------AATP----SEVMALR-EEGYTVLKFFPAEQA 129 (201)
T ss_pred -ECCC-CCHHHHHHHHHc--CCCEeCC----------------CCCH----HHHHHHH-HCCCCEEEECCchhh
Confidence 7897 345666666654 5666543 3444 6777788 799999999997443
No 65
>cd08211 RuBisCO_large_II Ribulose bisphosphate carboxylase large chain, Form II. Ribulose bisphosphate carboxylase (Rubisco) plays an important role in the Calvin reductive pentose phosphate pathway. It catalyzes the primary CO2 fixation step. Rubisco is activated by carbamylation of an active site lysine, stabilized by a divalent cation, which then catalyzes the proton abstraction from the substrate ribulose 1,5 bisphosphate (RuBP) and leads to the formation of two molecules of 3-phosphoglycerate. Members of the Rubisco family can be divided into 4 subgroups, Form I-IV , which differ in their taxonomic distribution and subunit composition. Form II is mainly found in bacteria, and forms large subunit oligomers (dimers, tetramers, etc.) that do not include small subunits.
Probab=88.66 E-value=0.55 Score=47.69 Aligned_cols=139 Identities=13% Similarity=0.145 Sum_probs=86.0
Q ss_pred HHhHHHHHHHHHHHHHcCCCccc--------cCCCCcchHHHHHHHHhhCCCCCCcccccchhhhhcccchhhhhhhcCC
Q psy15126 61 EKTLKRLADISKAFSDAGAHIVA--------PSDMMDNRIHAIKQSLFTSRQSSTTGLLSYSAKFCSAFYGPFREAAGSA 132 (300)
Q Consensus 61 d~Tl~~l~~~A~~~A~aGad~vA--------PSdmMDgrv~air~aLd~~g~~~~v~ImsysaK~aS~~YGPfRda~gS~ 132 (300)
=.|.+.+++++..++..| |+|= |-.-+..||.++.+++++..-. .
T Consensus 169 Glsp~~~a~~~y~~~~GG-D~IKDDE~l~dq~~~p~~eRv~~~~~a~~~a~~e-T------------------------- 221 (439)
T cd08211 169 GLRPKPFAEACYAFWLGG-DFIKNDEPQANQPFCPLKKVIPLVADAMRRAQDE-T------------------------- 221 (439)
T ss_pred cCCHHHHHHHHHHHHhcC-CccccccccCCCCCCCHHHHHHHHHHHHHHHHHh-h-------------------------
Confidence 368999999999999999 9873 2445677887777777776542 1
Q ss_pred CCCCCcceeeCCCCCCceEEEEeecccCCCCCCccccccCCCcccchHhHHHHHHHHHhhhcccccCCCCCccccchhhh
Q psy15126 133 PTFGDRSCYQLPCGSKGLAIRAAVCLCGYTSHGHCAIFNEDGSIHYEKTLKRLADISKAFSDAVYVPNHNTDRFQARDVS 212 (300)
Q Consensus 133 ~~~gdr~~yQ~~~~~~~~ai~~dvclc~yt~hGHcgi~~~~g~i~nd~tl~~l~~~a~~~a~~~~~~~~n~~~~~~~Da~ 212 (300)
|.++.|..+-.. | +.+.+.+.+.-. .+
T Consensus 222 ---G~~~~ya~NiTa-----------------~---------------~~~em~~ra~~a------------------~~ 248 (439)
T cd08211 222 ---GEAKLFSANITA-----------------D---------------DPDEMIARGEYI------------------LE 248 (439)
T ss_pred ---CCcceEEecCCC-----------------C---------------CHHHHHHHHHHH------------------HH
Confidence 556777665320 0 112222222221 34
Q ss_pred cCC-----ceeeccCcchHHHHHHHHHhhCCCCCEEeEecccccHHHHH-HHhCCCCCHHHHHHHHHHHHHHcCCCEEEe
Q psy15126 213 QGA-----DFLMVKPALPYLDIISEVKSRHPAYPLFVYQVSGEYAMLAF-AAQAGALDLKRALMETLTCLRRGGADVIIS 286 (300)
Q Consensus 213 ~GA-----DivmVkPsmm~ld~Ir~~~d~~~~vpi~aY~vSgeY~~~r~-Aa~~~~~n~~eal~E~~~~~~r~GAD~Ii~ 286 (300)
+|+ ..|||.|-..=++.++.+.+.++++||+++-+ ..|.+-. -.+.|+ ... ++-.+..+ +|||.+.+
T Consensus 249 ~gg~~~G~~~vMv~~~~~G~~al~~lr~~~~~l~IhaHrA--~~ga~~r~~~~~Gi-s~~--vl~kl~RL--aGaD~~h~ 321 (439)
T cd08211 249 AFGPNAGHVAFLVDGYVAGPAAVTTARRRFPDQFLHYHRA--GHGAVTSPQSKRGY-TAF--VLSKMARL--QGASGIHT 321 (439)
T ss_pred hcCcccCceEEEECcccchHHHHHHHHhhCCCcEEEeccc--ccccccccccCCCc-cHH--HHHHHHHh--cCCCcccc
Confidence 544 99999998665666777666567999999855 3333211 112344 332 44444444 89999965
No 66
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.
Probab=88.62 E-value=1.7 Score=43.49 Aligned_cols=57 Identities=25% Similarity=0.320 Sum_probs=42.4
Q ss_pred hhcCCceeeccCcc----hHHHHHHHHHhhCCCCCEEeEecccccHHHHHHHhCCCCCHHHHHHHHHHHHHHcCCCEEEe
Q psy15126 211 VSQGADFLMVKPAL----PYLDIISEVKSRHPAYPLFVYQVSGEYAMLAFAAQAGALDLKRALMETLTCLRRGGADVIIS 286 (300)
Q Consensus 211 a~~GADivmVkPsm----m~ld~Ir~~~d~~~~vpi~aY~vSgeY~~~r~Aa~~~~~n~~eal~E~~~~~~r~GAD~Ii~ 286 (300)
+++|+|+|.|-.+. -.++.|+++++.||++||++=.+ .+. |..+.+.++|||.|.|
T Consensus 233 ~~aG~d~I~vd~a~g~~~~~~~~i~~i~~~~~~~~vi~G~v---------------~t~-----~~a~~l~~aGad~i~v 292 (450)
T TIGR01302 233 VKAGVDVIVIDSSHGHSIYVIDSIKEIKKTYPDLDIIAGNV---------------ATA-----EQAKALIDAGADGLRV 292 (450)
T ss_pred HHhCCCEEEEECCCCcHhHHHHHHHHHHHhCCCCCEEEEeC---------------CCH-----HHHHHHHHhCCCEEEE
Confidence 78999999987752 26889999999999999999544 333 2333444789999954
Q ss_pred c
Q psy15126 287 Y 287 (300)
Q Consensus 287 y 287 (300)
-
T Consensus 293 g 293 (450)
T TIGR01302 293 G 293 (450)
T ss_pred C
Confidence 3
No 67
>PLN02417 dihydrodipicolinate synthase
Probab=88.35 E-value=5.4 Score=37.24 Aligned_cols=82 Identities=15% Similarity=0.148 Sum_probs=50.5
Q ss_pred ccCCCcccchHhHHHHHHHHHhhhcccccCCCCCccccchhhhcCCceeeccCc------ch---HHHHHHHHHhh-CCC
Q psy15126 170 FNEDGSIHYEKTLKRLADISKAFSDAVYVPNHNTDRFQARDVSQGADFLMVKPA------LP---YLDIISEVKSR-HPA 239 (300)
Q Consensus 170 ~~~~g~i~nd~tl~~l~~~a~~~a~~~~~~~~n~~~~~~~Da~~GADivmVkPs------mm---~ld~Ir~~~d~-~~~ 239 (300)
|++||+|+.+..-+.+-.. ++.|+|-|.|.=+ |. +..+++.+.+. -..
T Consensus 13 f~~~g~iD~~~~~~~i~~l----------------------~~~Gv~Gi~~~GstGE~~~ls~~Er~~~~~~~~~~~~~~ 70 (280)
T PLN02417 13 YLPDGRFDLEAYDSLVNMQ----------------------IENGAEGLIVGGTTGEGQLMSWDEHIMLIGHTVNCFGGK 70 (280)
T ss_pred cCCCCCcCHHHHHHHHHHH----------------------HHcCCCEEEECccCcchhhCCHHHHHHHHHHHHHHhCCC
Confidence 4677888877754443333 6789998876433 21 78888887776 335
Q ss_pred CCEEeEecccccHHHHHHHhCCCCCHHHHHHHHHHHHHHcCCCEEEecc
Q psy15126 240 YPLFVYQVSGEYAMLAFAAQAGALDLKRALMETLTCLRRGGADVIISYY 288 (300)
Q Consensus 240 vpi~aY~vSgeY~~~r~Aa~~~~~n~~eal~E~~~~~~r~GAD~Ii~y~ 288 (300)
+||++- + +-.+.++++..+.... +.|||.+|+-|
T Consensus 71 ~pvi~g-v-------------~~~~t~~~i~~a~~a~-~~Gadav~~~~ 104 (280)
T PLN02417 71 IKVIGN-T-------------GSNSTREAIHATEQGF-AVGMHAALHIN 104 (280)
T ss_pred CcEEEE-C-------------CCccHHHHHHHHHHHH-HcCCCEEEEcC
Confidence 898865 2 2235555544444443 67777776643
No 68
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=87.96 E-value=1.8 Score=44.19 Aligned_cols=56 Identities=25% Similarity=0.345 Sum_probs=41.8
Q ss_pred hhcCCceeeccCc---ch-HHHHHHHHHhhCCCCCEEeEecccccHHHHHHHhCCCCCHHHHHHHHHHHHHHcCCCEEEe
Q psy15126 211 VSQGADFLMVKPA---LP-YLDIISEVKSRHPAYPLFVYQVSGEYAMLAFAAQAGALDLKRALMETLTCLRRGGADVIIS 286 (300)
Q Consensus 211 a~~GADivmVkPs---mm-~ld~Ir~~~d~~~~vpi~aY~vSgeY~~~r~Aa~~~~~n~~eal~E~~~~~~r~GAD~Ii~ 286 (300)
+++|+|+|-|-++ .. .++.|+++++.||++||++=.| .+.+ ..+.+.++|||.|.+
T Consensus 250 ~~ag~d~i~id~a~G~s~~~~~~i~~ik~~~~~~~v~aG~V---------------~t~~-----~a~~~~~aGad~I~v 309 (495)
T PTZ00314 250 IEAGVDVLVVDSSQGNSIYQIDMIKKLKSNYPHVDIIAGNV---------------VTAD-----QAKNLIDAGADGLRI 309 (495)
T ss_pred HHCCCCEEEEecCCCCchHHHHHHHHHHhhCCCceEEECCc---------------CCHH-----HHHHHHHcCCCEEEE
Confidence 7899999988885 22 5889999999999999998444 3332 223444799999965
No 69
>TIGR01182 eda Entner-Doudoroff aldolase. 2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida
Probab=87.74 E-value=5.2 Score=36.65 Aligned_cols=35 Identities=14% Similarity=0.171 Sum_probs=27.6
Q ss_pred hhcCCceeeccCcch-H-HHHHHHHHhhCCCCCEEeE
Q psy15126 211 VSQGADFLMVKPALP-Y-LDIISEVKSRHPAYPLFVY 245 (300)
Q Consensus 211 a~~GADivmVkPsmm-~-ld~Ir~~~d~~~~vpi~aY 245 (300)
.+.|||+|=+=|+.. - ...|+.++.=||++|+|+=
T Consensus 118 ~~~Ga~~vKlFPA~~~GG~~yikal~~plp~i~~~pt 154 (204)
T TIGR01182 118 LELGITALKLFPAEVSGGVKMLKALAGPFPQVRFCPT 154 (204)
T ss_pred HHCCCCEEEECCchhcCCHHHHHHHhccCCCCcEEec
Confidence 689999998889843 2 6677777777899999964
No 70
>PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=87.55 E-value=23 Score=32.48 Aligned_cols=39 Identities=15% Similarity=0.070 Sum_probs=30.3
Q ss_pred HhHHHHHHHHHHHHHcCCCccccCCCCcchHHHHHHHHh
Q psy15126 62 KTLKRLADISKAFSDAGAHIVAPSDMMDNRIHAIKQSLF 100 (300)
Q Consensus 62 ~Tl~~l~~~A~~~A~aGad~vAPSdmMDgrv~air~aLd 100 (300)
.+.+...+.+..+.+.|+.++-..---++-...|++.-.
T Consensus 22 ~~~~~a~~~~~al~~~Gi~~iEit~~~~~a~~~i~~l~~ 60 (213)
T PRK06552 22 ESKEEALKISLAVIKGGIKAIEVTYTNPFASEVIKELVE 60 (213)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEECCCccHHHHHHHHHH
Confidence 478889999999999999999886666776666655543
No 71
>PRK13111 trpA tryptophan synthase subunit alpha; Provisional
Probab=87.53 E-value=2.1 Score=40.26 Aligned_cols=63 Identities=27% Similarity=0.424 Sum_probs=32.5
Q ss_pred HHHHHHHHhhCCCCC--EEeEec-ccccH---HHHHHHhCCC-------CCHHHHHHHHHHHHHHcCCCEEE-ecchH
Q psy15126 227 LDIISEVKSRHPAYP--LFVYQV-SGEYA---MLAFAAQAGA-------LDLKRALMETLTCLRRGGADVII-SYYTP 290 (300)
Q Consensus 227 ld~Ir~~~d~~~~vp--i~aY~v-SgeY~---~~r~Aa~~~~-------~n~~eal~E~~~~~~r~GAD~Ii-~y~A~ 290 (300)
++.+++++++.+++| +|+|-- --.|| -++.+.++|. +.. |-..|....+++-|=+.|. +-|..
T Consensus 77 ~~~~~~~r~~~~~~p~vlm~Y~N~i~~~G~e~f~~~~~~aGvdGviipDLp~-ee~~~~~~~~~~~gl~~I~lvap~t 153 (258)
T PRK13111 77 FELVREIREKDPTIPIVLMTYYNPIFQYGVERFAADAAEAGVDGLIIPDLPP-EEAEELRAAAKKHGLDLIFLVAPTT 153 (258)
T ss_pred HHHHHHHHhcCCCCCEEEEecccHHhhcCHHHHHHHHHHcCCcEEEECCCCH-HHHHHHHHHHHHcCCcEEEEeCCCC
Confidence 677788775556788 455521 11222 2333444442 222 2334555555566877766 55544
No 72
>COG0329 DapA Dihydrodipicolinate synthase/N-acetylneuraminate lyase [Amino acid transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=87.48 E-value=5.9 Score=37.70 Aligned_cols=82 Identities=23% Similarity=0.279 Sum_probs=55.3
Q ss_pred ccCCCcccchHhHHHHHHHHHhhhcccccCCCCCccccchhhhcCCceeeccCcc---h------HHHHHHHHHhh-CCC
Q psy15126 170 FNEDGSIHYEKTLKRLADISKAFSDAVYVPNHNTDRFQARDVSQGADFLMVKPAL---P------YLDIISEVKSR-HPA 239 (300)
Q Consensus 170 ~~~~g~i~nd~tl~~l~~~a~~~a~~~~~~~~n~~~~~~~Da~~GADivmVkPsm---m------~ld~Ir~~~d~-~~~ 239 (300)
|++||+|+.+.+-+.+..+ ++.|.|-|.+.-+. + +..+++.+.+. -..
T Consensus 16 F~~dg~vD~~a~~~lv~~l----------------------i~~Gv~gi~~~GttGE~~~Ls~eEr~~v~~~~v~~~~gr 73 (299)
T COG0329 16 FDEDGSVDEEALRRLVEFL----------------------IAAGVDGLVVLGTTGESPTLTLEERKEVLEAVVEAVGGR 73 (299)
T ss_pred CCCCCCcCHHHHHHHHHHH----------------------HHcCCCEEEECCCCccchhcCHHHHHHHHHHHHHHHCCC
Confidence 3557888877775544333 89999988877652 1 67888888877 446
Q ss_pred CCEEeEecccccHHHHHHHhCCCCCHHHHHHHHHHHHHHcCCCEEEecc
Q psy15126 240 YPLFVYQVSGEYAMLAFAAQAGALDLKRALMETLTCLRRGGADVIISYY 288 (300)
Q Consensus 240 vpi~aY~vSgeY~~~r~Aa~~~~~n~~eal~E~~~~~~r~GAD~Ii~y~ 288 (300)
+||.+=. |-.+.+|++.-+-. .++.|||-||+-|
T Consensus 74 vpviaG~--------------g~~~t~eai~lak~-a~~~Gad~il~v~ 107 (299)
T COG0329 74 VPVIAGV--------------GSNSTAEAIELAKH-AEKLGADGILVVP 107 (299)
T ss_pred CcEEEec--------------CCCcHHHHHHHHHH-HHhcCCCEEEEeC
Confidence 8887752 23466777544444 4478999888754
No 73
>cd00950 DHDPS Dihydrodipicolinate synthase (DHDPS) is a key enzyme in lysine biosynthesis. It catalyzes the aldol condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a Schiff base formation between pyruvate and a lysine residue. The functional enzyme is a homotetramer consisting of a dimer of dimers. DHDPS is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways.
Probab=87.03 E-value=6.7 Score=36.10 Aligned_cols=82 Identities=20% Similarity=0.253 Sum_probs=52.1
Q ss_pred ccCCCcccchHhHHHHHHHHHhhhcccccCCCCCccccchhhhcCCceeeccCcc-----h----HHHHHHHHHhhC-CC
Q psy15126 170 FNEDGSIHYEKTLKRLADISKAFSDAVYVPNHNTDRFQARDVSQGADFLMVKPAL-----P----YLDIISEVKSRH-PA 239 (300)
Q Consensus 170 ~~~~g~i~nd~tl~~l~~~a~~~a~~~~~~~~n~~~~~~~Da~~GADivmVkPsm-----m----~ld~Ir~~~d~~-~~ 239 (300)
|++||.|+.+.+.+.+... +++|+|-|.|.=+. + +..+++.+.+.. .+
T Consensus 12 f~~dg~iD~~~~~~~i~~l----------------------~~~Gv~gl~v~GstGE~~~lt~~Er~~l~~~~~~~~~~~ 69 (284)
T cd00950 12 FKDDGSVDFDALERLIEFQ----------------------IENGTDGLVVCGTTGESPTLSDEEHEAVIEAVVEAVNGR 69 (284)
T ss_pred cCCCCCcCHHHHHHHHHHH----------------------HHcCCCEEEECCCCcchhhCCHHHHHHHHHHHHHHhCCC
Confidence 4667888888776655444 67899998766332 1 677777777763 35
Q ss_pred CCEEeEecccccHHHHHHHhCCCCCHHHHHHHHHHHHHHcCCCEEEecc
Q psy15126 240 YPLFVYQVSGEYAMLAFAAQAGALDLKRALMETLTCLRRGGADVIISYY 288 (300)
Q Consensus 240 vpi~aY~vSgeY~~~r~Aa~~~~~n~~eal~E~~~~~~r~GAD~Ii~y~ 288 (300)
+||++= |+ ..+.+++ .|..+..++.|||.||+-|
T Consensus 70 ~~vi~g-v~-------------~~~~~~~-~~~a~~a~~~G~d~v~~~~ 103 (284)
T cd00950 70 VPVIAG-TG-------------SNNTAEA-IELTKRAEKAGADAALVVT 103 (284)
T ss_pred CcEEec-cC-------------CccHHHH-HHHHHHHHHcCCCEEEEcc
Confidence 888754 22 2244555 3444444578888777654
No 74
>PF00072 Response_reg: Response regulator receiver domain; InterPro: IPR001789 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Bipartite response regulator proteins are involved in a two-component signal transduction system in bacteria, and certain eukaryotes like protozoa, that functions to detect and respond to environmental changes []. These systems have been detected during host invasion, drug resistance, motility, phosphate uptake, osmoregulation, and nitrogen fixation, amongst others []. The two-component system consists of a histidine protein kinase environmental sensor that phosphorylates the receiver domain of a response regulator protein; phosphorylation induces a conformational change in the response regulator, which activates the effector domain, triggering the cellular response []. The domains of the two-component proteins are highly modular, but the core structures and activities are maintained. The response regulators act as phosphorylation-activated switches to affect a cellular response, usually by transcriptional regulation. Most of these proteins consist of two domains, an N-terminal response regulator receiver domain, and a variable C-terminal effector domain with DNA-binding activity. This entry represents the response regulator receiver domain, which belongs to the CheY family, and receives the signal from the sensor partner in the two-component system.; GO: 0000156 two-component response regulator activity, 0000160 two-component signal transduction system (phosphorelay), 0006355 regulation of transcription, DNA-dependent; PDB: 2QR3_A 2QXY_A 1I3C_A 1JLK_A 2PKX_A 2PL1_A 3H1F_A 3H1E_A 3GWG_A 3H1G_A ....
Probab=86.56 E-value=5.4 Score=29.85 Aligned_cols=93 Identities=14% Similarity=0.195 Sum_probs=57.3
Q ss_pred chHhHHHHHHHHHhhhcc-cccCCCCCccccchhhhcCCceeecc---CcchHHHHHHHHHhhCCCCCEEeEecccccHH
Q psy15126 178 YEKTLKRLADISKAFSDA-VYVPNHNTDRFQARDVSQGADFLMVK---PALPYLDIISEVKSRHPAYPLFVYQVSGEYAM 253 (300)
Q Consensus 178 nd~tl~~l~~~a~~~a~~-~~~~~~n~~~~~~~Da~~GADivmVk---Psmm~ld~Ir~~~d~~~~vpi~aY~vSgeY~~ 253 (300)
+++....+.+..+..... .....+|.+.+...-.+...|++++- |.+--++.+++++...+++|++.++.......
T Consensus 6 ~~~~~~~~l~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~d~iiid~~~~~~~~~~~~~~i~~~~~~~~ii~~t~~~~~~~ 85 (112)
T PF00072_consen 6 DDPEIRELLEKLLERAGYEEVTTASSGEEALELLKKHPPDLIIIDLELPDGDGLELLEQIRQINPSIPIIVVTDEDDSDE 85 (112)
T ss_dssp SSHHHHHHHHHHHHHTTEEEEEEESSHHHHHHHHHHSTESEEEEESSSSSSBHHHHHHHHHHHTTTSEEEEEESSTSHHH
T ss_pred CCHHHHHHHHHHHHhCCCCEEEEECCHHHHHHHhcccCceEEEEEeeeccccccccccccccccccccEEEecCCCCHHH
Confidence 344444444444443332 33344555555555566778999887 33447889999988878999999975333222
Q ss_pred HHHHHhCCCCCHHHHHHHHHHHHHHcCCCEEEecch
Q psy15126 254 LAFAAQAGALDLKRALMETLTCLRRGGADVIISYYT 289 (300)
Q Consensus 254 ~r~Aa~~~~~n~~eal~E~~~~~~r~GAD~Ii~y~A 289 (300)
....+ +.|++-.+.||.
T Consensus 86 ------------------~~~~~-~~g~~~~l~kp~ 102 (112)
T PF00072_consen 86 ------------------VQEAL-RAGADDYLSKPF 102 (112)
T ss_dssp ------------------HHHHH-HTTESEEEESSS
T ss_pred ------------------HHHHH-HCCCCEEEECCC
Confidence 22233 578888888873
No 75
>TIGR02313 HpaI-NOT-DapA 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase. This model represents a subset of the DapA (dihydrodipicolinate synthase) family which has apparently evolved a separate function. The product of DapA, dihydrodipicolinate, results from the non-enzymatic cyclization and dehydration of 6-amino-2,4-dihydroxyhept-2-ene-1,7-dioic acid, which is different from the substrate of this reaction only in the presence of the amino group. In the absence of this amino group, and running the reaction in the opposite direction, the reaction corresponds to the HpaI aldolase component of the 4-hydroxyphenylacetic acid catabolism pathway (see TIGR02311). At present, this variant of DapA is found only in Oceanobacillus iheyensis HTE831 and Thermus thermophilus HB27. In both of these cases, one or more other DapA genes can be found and the one identified by this model is part of an operon for 4-hydroxyphenylacetic acid catabolism.
Probab=86.32 E-value=11 Score=35.62 Aligned_cols=38 Identities=29% Similarity=0.525 Sum_probs=28.2
Q ss_pred hhcCCceeeccCcc--h-----HHHHHHHHHhhCCCCCEEeEecc
Q psy15126 211 VSQGADFLMVKPAL--P-----YLDIISEVKSRHPAYPLFVYQVS 248 (300)
Q Consensus 211 a~~GADivmVkPsm--m-----~ld~Ir~~~d~~~~vpi~aY~vS 248 (300)
.+.|||.|||-|-. . .++..+++.+..|++||+.|+.-
T Consensus 92 ~~~Gad~v~v~pP~y~~~~~~~l~~~f~~ia~a~~~lpv~iYn~P 136 (294)
T TIGR02313 92 EEAGADAAMVIVPYYNKPNQEALYDHFAEVADAVPDFPIIIYNIP 136 (294)
T ss_pred HHcCCCEEEEcCccCCCCCHHHHHHHHHHHHHhccCCCEEEEeCc
Confidence 46799999998851 1 46666667776558999999873
No 76
>PRK12999 pyruvate carboxylase; Reviewed
Probab=86.26 E-value=22 Score=40.22 Aligned_cols=46 Identities=24% Similarity=0.412 Sum_probs=32.6
Q ss_pred hHHHHHHHHHhhhcccccCCCCCccccchhhhcCCceeeccCc--ch----HHHHHHHHHhhCCCCCEEeE
Q psy15126 181 TLKRLADISKAFSDAVYVPNHNTDRFQARDVSQGADFLMVKPA--LP----YLDIISEVKSRHPAYPLFVY 245 (300)
Q Consensus 181 tl~~l~~~a~~~a~~~~~~~~n~~~~~~~Da~~GADivmVkPs--mm----~ld~Ir~~~d~~~~vpi~aY 245 (300)
|++.+.+.+... .+.|||+|-+|=. ++ .-+.|+.+++++ ++||-.+
T Consensus 689 ~~~~~~~~a~~l------------------~~~Ga~~i~ikDt~G~l~P~~~~~lv~~lk~~~-~ipi~~H 740 (1146)
T PRK12999 689 DLDYYVDLAKEL------------------EKAGAHILAIKDMAGLLKPAAAYELVSALKEEV-DLPIHLH 740 (1146)
T ss_pred CHHHHHHHHHHH------------------HHcCCCEEEECCccCCCCHHHHHHHHHHHHHHc-CCeEEEE
Confidence 577777777765 6789999976654 22 456777778777 7887544
No 77
>PRK15063 isocitrate lyase; Provisional
Probab=85.98 E-value=4.5 Score=41.31 Aligned_cols=41 Identities=20% Similarity=0.380 Sum_probs=29.6
Q ss_pred hhcCCceeeccCcchHHHHHHHHHhhC-CCCC--EEeEecccccH
Q psy15126 211 VSQGADFLMVKPALPYLDIISEVKSRH-PAYP--LFVYQVSGEYA 252 (300)
Q Consensus 211 a~~GADivmVkPsmm~ld~Ir~~~d~~-~~vp--i~aY~vSgeY~ 252 (300)
++ |||+|.+..+.+-++.+++..+.. ..+| +++|+.|-.+-
T Consensus 275 a~-GAD~iw~Et~~~d~ee~~~fa~~v~~~~P~~~layn~sPsfn 318 (428)
T PRK15063 275 AP-YADLIWCETSTPDLEEARRFAEAIHAKFPGKLLAYNCSPSFN 318 (428)
T ss_pred hc-CCCEEEeCCCCCCHHHHHHHHHhhcccCccceeecCCCCCcc
Confidence 46 999998876677788888887763 2247 89997654443
No 78
>cd00423 Pterin_binding Pterin binding enzymes. This family includes dihydropteroate synthase (DHPS) and cobalamin-dependent methyltransferases such as methyltetrahydrofolate, corrinoid iron-sulfur protein methyltransferase (MeTr) and methionine synthase (MetH). DHPS, a functional homodimer, catalyzes the condensation of p-aminobenzoic acid (pABA) in the de novo biosynthesis of folate, which is an essential cofactor in both nucleic acid and protein biosynthesis. Prokaryotes (and some lower eukaryotes) must synthesize folate de novo, while higher eukaryotes are able to utilize dietary folate and therefore lack DHPS. Sulfonamide drugs, which are substrate analogs of pABA, target DHPS. Cobalamin-dependent methyltransferases catalyze the transfer of a methyl group via a methyl- cob(III)amide intermediate. These include MeTr, a functional heterodimer, and the folate binding domain of MetH.
Probab=85.87 E-value=29 Score=32.04 Aligned_cols=70 Identities=13% Similarity=0.197 Sum_probs=44.9
Q ss_pred HhHHHHHHHHHHHHHcCCCccccCCCCc-------------chHHHHHHHHhhC-CCCCCcccccchhhhhccc--chhh
Q psy15126 62 KTLKRLADISKAFSDAGAHIVAPSDMMD-------------NRIHAIKQSLFTS-RQSSTTGLLSYSAKFCSAF--YGPF 125 (300)
Q Consensus 62 ~Tl~~l~~~A~~~A~aGad~vAPSdmMD-------------grv~air~aLd~~-g~~~~v~ImsysaK~aS~~--YGPf 125 (300)
.+.+.+.++|..+.++|||+|=...... .|+...-+.|.+. +. .++|-||..+-.-.= +|
T Consensus 21 ~~~~~~~~~a~~~~~~GAdiIDvG~~st~p~~~~~~~~~E~~rl~~~v~~l~~~~~~--piSIDT~~~~v~~aaL~~g-- 96 (258)
T cd00423 21 LSLDKALEHARRMVEEGADIIDIGGESTRPGAEPVSVEEELERVIPVLRALAGEPDV--PISVDTFNAEVAEAALKAG-- 96 (258)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEECCCcCCCCCCcCCHHHHHHHHHHHHHHHHhcCCC--eEEEeCCcHHHHHHHHHhC--
Confidence 4778999999999999999997633322 3555666666544 44 578888866543311 22
Q ss_pred hhhhcCCCCC
Q psy15126 126 REAAGSAPTF 135 (300)
Q Consensus 126 Rda~gS~~~~ 135 (300)
++-+.|.-.+
T Consensus 97 ~~iINdis~~ 106 (258)
T cd00423 97 ADIINDVSGG 106 (258)
T ss_pred CCEEEeCCCC
Confidence 5555555443
No 79
>PLN02274 inosine-5'-monophosphate dehydrogenase
Probab=85.64 E-value=2.6 Score=43.21 Aligned_cols=56 Identities=18% Similarity=0.326 Sum_probs=42.0
Q ss_pred hhcCCceeeccCcc--h--HHHHHHHHHhhCCCCCEEeEecccccHHHHHHHhCCCCCHHHHHHHHHHHHHHcCCCEEEe
Q psy15126 211 VSQGADFLMVKPAL--P--YLDIISEVKSRHPAYPLFVYQVSGEYAMLAFAAQAGALDLKRALMETLTCLRRGGADVIIS 286 (300)
Q Consensus 211 a~~GADivmVkPsm--m--~ld~Ir~~~d~~~~vpi~aY~vSgeY~~~r~Aa~~~~~n~~eal~E~~~~~~r~GAD~Ii~ 286 (300)
+++|+|+|.|-.+- . .++.|+++|+.||+++|++=.| .+.++ +...+ ++|||.|.+
T Consensus 257 ~~ag~d~i~iD~~~g~~~~~~~~i~~ik~~~p~~~vi~g~v---------------~t~e~----a~~a~-~aGaD~i~v 316 (505)
T PLN02274 257 VKAGVDVVVLDSSQGDSIYQLEMIKYIKKTYPELDVIGGNV---------------VTMYQ----AQNLI-QAGVDGLRV 316 (505)
T ss_pred HHcCCCEEEEeCCCCCcHHHHHHHHHHHHhCCCCcEEEecC---------------CCHHH----HHHHH-HcCcCEEEE
Confidence 78999999876662 2 5789999999999999988655 33332 33344 699999976
No 80
>cd00408 DHDPS-like Dihydrodipicolinate synthase family. A member of the class I aldolases, which use an active-site lysine which stablilzes a reaction intermediate via Schiff base formation, and have TIM beta/alpha barrel fold. The dihydrodipicolinate synthase family comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways and includes such proteins as N-acetylneuraminate lyase, MosA protein, 5-keto-4-deoxy-glucarate dehydratase, trans-o-hydroxybenzylidenepyruvate hydratase-aldolase, trans-2'-carboxybenzalpyruvate hydratase-aldolase, and 2-keto-3-deoxy- gluconate aldolase. The family is also referred to as the N-acetylneuraminate lyase (NAL) family.
Probab=85.53 E-value=14 Score=33.84 Aligned_cols=36 Identities=22% Similarity=0.410 Sum_probs=27.4
Q ss_pred hhcCCceeeccCcch-------HHHHHHHHHhhCCCCCEEeEec
Q psy15126 211 VSQGADFLMVKPALP-------YLDIISEVKSRHPAYPLFVYQV 247 (300)
Q Consensus 211 a~~GADivmVkPsmm-------~ld~Ir~~~d~~~~vpi~aY~v 247 (300)
.+.|||.|||-|-.. .++..+++.+. .++||+-|+.
T Consensus 89 ~~~Gad~v~v~pP~y~~~~~~~~~~~~~~ia~~-~~~pi~iYn~ 131 (281)
T cd00408 89 EEAGADGVLVVPPYYNKPSQEGIVAHFKAVADA-SDLPVILYNI 131 (281)
T ss_pred HHcCCCEEEECCCcCCCCCHHHHHHHHHHHHhc-CCCCEEEEEC
Confidence 467999999888421 46666777776 5899999988
No 81
>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.
Probab=85.24 E-value=2.4 Score=43.22 Aligned_cols=55 Identities=24% Similarity=0.382 Sum_probs=42.7
Q ss_pred hhcCCceeeccCcch----HHHHHHHHHhhCCCCCEEeEecccccHHHHHHHhCCCCCHHHHHHHHHHHHHHcCCCEEE
Q psy15126 211 VSQGADFLMVKPALP----YLDIISEVKSRHPAYPLFVYQVSGEYAMLAFAAQAGALDLKRALMETLTCLRRGGADVII 285 (300)
Q Consensus 211 a~~GADivmVkPsmm----~ld~Ir~~~d~~~~vpi~aY~vSgeY~~~r~Aa~~~~~n~~eal~E~~~~~~r~GAD~Ii 285 (300)
+++|+|+|.+-.+.. .++.|+++++.||++||++=++ .. .|..+.+.++|||.|-
T Consensus 234 v~aGVd~i~~D~a~g~~~~~~~~i~~i~~~~~~~~vi~g~~---------------~t-----~~~~~~l~~~G~d~i~ 292 (475)
T TIGR01303 234 LDAGVDVLVIDTAHGHQVKMISAIKAVRALDLGVPIVAGNV---------------VS-----AEGVRDLLEAGANIIK 292 (475)
T ss_pred HHhCCCEEEEeCCCCCcHHHHHHHHHHHHHCCCCeEEEecc---------------CC-----HHHHHHHHHhCCCEEE
Confidence 679999998877733 7999999999999999999433 22 3444556678999986
No 82
>cd00951 KDGDH 5-dehydro-4-deoxyglucarate dehydratase, also called 5-keto-4-deoxy-glucarate dehydratase (KDGDH), which is member of dihydrodipicolinate synthase (DHDPS) family that comprises several pyruvate-dependent class I aldolases. The enzyme is involved in glucarate metabolism, and its mechanism presumbly involves a Schiff-base intermediate similar to members of DHDPS family. While in the case of Pseudomonas sp. 5-dehydro-4-deoxy-D-glucarate is degraded by KDGDH to 2,5-dioxopentanoate, in certain species of Enterobacteriaceae it is degraded instead to pyruvate and glycerate.
Probab=85.17 E-value=13 Score=34.81 Aligned_cols=38 Identities=18% Similarity=0.271 Sum_probs=28.0
Q ss_pred hhcCCceeeccCcch-------HHHHHHHHHhhCCCCCEEeEeccc
Q psy15126 211 VSQGADFLMVKPALP-------YLDIISEVKSRHPAYPLFVYQVSG 249 (300)
Q Consensus 211 a~~GADivmVkPsmm-------~ld~Ir~~~d~~~~vpi~aY~vSg 249 (300)
.+.|||.+||-|-.. .++..+++.+.. ++||+.|+-+|
T Consensus 91 ~~~Gad~v~~~pP~y~~~~~~~i~~~f~~v~~~~-~~pi~lYn~~g 135 (289)
T cd00951 91 EKAGADGILLLPPYLTEAPQEGLYAHVEAVCKST-DLGVIVYNRAN 135 (289)
T ss_pred HHhCCCEEEECCCCCCCCCHHHHHHHHHHHHhcC-CCCEEEEeCCC
Confidence 578999999987622 356666676764 79999998644
No 83
>TIGR00683 nanA N-acetylneuraminate lyase. N-acetylneuraminate lyase is also known as N-acetylneuraminic acid aldolase, sialic acid aldolase, or sialate lyase. It is an intracellular enzyme. The structure of this homotetrameric enzyme related to dihydrodipicolinate synthase is known. In Clostridium tertium, the enzyme appears to be in an operon with a secreted sialidase that releases sialic acid from host sialoglycoconjugates. In several E. coli strains, however, this enzyme is responsible for N-acetyl-D-neuraminic acid synthesis for capsule production by condensing N-acetyl-D-mannosamine and pyruvate.
Probab=84.90 E-value=14 Score=34.70 Aligned_cols=38 Identities=13% Similarity=0.201 Sum_probs=27.8
Q ss_pred hhcCCceeeccCcch-------HHHHHHHHHhhCCCCCEEeEecc
Q psy15126 211 VSQGADFLMVKPALP-------YLDIISEVKSRHPAYPLFVYQVS 248 (300)
Q Consensus 211 a~~GADivmVkPsmm-------~ld~Ir~~~d~~~~vpi~aY~vS 248 (300)
.+.|||.|||-|-.- -++..+++.+..+++||+.|+.-
T Consensus 93 ~~~Gad~v~v~~P~y~~~~~~~i~~yf~~v~~~~~~lpv~lYn~P 137 (290)
T TIGR00683 93 TELGYDCLSAVTPFYYKFSFPEIKHYYDTIIAETGGLNMIVYSIP 137 (290)
T ss_pred HHhCCCEEEEeCCcCCCCCHHHHHHHHHHHHhhCCCCCEEEEeCc
Confidence 578999999966411 45666667666557999999973
No 84
>PRK03170 dihydrodipicolinate synthase; Provisional
Probab=84.88 E-value=10 Score=35.24 Aligned_cols=82 Identities=21% Similarity=0.241 Sum_probs=51.3
Q ss_pred ccCCCcccchHhHHHHHHHHHhhhcccccCCCCCccccchhhhcCCceeeccCcc------h---HHHHHHHHHhhC-CC
Q psy15126 170 FNEDGSIHYEKTLKRLADISKAFSDAVYVPNHNTDRFQARDVSQGADFLMVKPAL------P---YLDIISEVKSRH-PA 239 (300)
Q Consensus 170 ~~~~g~i~nd~tl~~l~~~a~~~a~~~~~~~~n~~~~~~~Da~~GADivmVkPsm------m---~ld~Ir~~~d~~-~~ 239 (300)
|++||+|+.+..-+.+... ++.|.|-|.|.=+. . |..+++.+.+.. .+
T Consensus 13 f~~dg~iD~~~l~~~i~~l----------------------~~~Gv~gi~~~Gs~GE~~~ls~~Er~~~~~~~~~~~~~~ 70 (292)
T PRK03170 13 FKEDGSVDFAALRKLVDYL----------------------IANGTDGLVVVGTTGESPTLTHEEHEELIRAVVEAVNGR 70 (292)
T ss_pred cCCCCCcCHHHHHHHHHHH----------------------HHcCCCEEEECCcCCccccCCHHHHHHHHHHHHHHhCCC
Confidence 4677888888775554444 67888888654331 1 778888777763 35
Q ss_pred CCEEeEecccccHHHHHHHhCCCCCHHHHHHHHHHHHHHcCCCEEEecc
Q psy15126 240 YPLFVYQVSGEYAMLAFAAQAGALDLKRALMETLTCLRRGGADVIISYY 288 (300)
Q Consensus 240 vpi~aY~vSgeY~~~r~Aa~~~~~n~~eal~E~~~~~~r~GAD~Ii~y~ 288 (300)
+||++-.. ..+.++++.. .+..++.|||.||+-|
T Consensus 71 ~~vi~gv~--------------~~~~~~~i~~-a~~a~~~G~d~v~~~p 104 (292)
T PRK03170 71 VPVIAGTG--------------SNSTAEAIEL-TKFAEKAGADGALVVT 104 (292)
T ss_pred CcEEeecC--------------CchHHHHHHH-HHHHHHcCCCEEEECC
Confidence 89886522 2244555443 3444468888888743
No 85
>PRK07807 inosine 5-monophosphate dehydrogenase; Validated
Probab=84.15 E-value=2.9 Score=42.69 Aligned_cols=55 Identities=27% Similarity=0.426 Sum_probs=42.1
Q ss_pred hhcCCceeeccCc----chHHHHHHHHHhhCCCCCEEeEecccccHHHHHHHhCCCCCHHHHHHHHHHHHHHcCCCEEE
Q psy15126 211 VSQGADFLMVKPA----LPYLDIISEVKSRHPAYPLFVYQVSGEYAMLAFAAQAGALDLKRALMETLTCLRRGGADVII 285 (300)
Q Consensus 211 a~~GADivmVkPs----mm~ld~Ir~~~d~~~~vpi~aY~vSgeY~~~r~Aa~~~~~n~~eal~E~~~~~~r~GAD~Ii 285 (300)
+++|+|+|.|-.+ .-.++.|+++|+.||+++||+=+|+ + .|..+++.++|||.|-
T Consensus 236 v~aGvd~i~~D~a~~~~~~~~~~i~~ik~~~p~~~v~agnv~---------------t-----~~~a~~l~~aGad~v~ 294 (479)
T PRK07807 236 LEAGVDVLVVDTAHGHQEKMLEALRAVRALDPGVPIVAGNVV---------------T-----AEGTRDLVEAGADIVK 294 (479)
T ss_pred HHhCCCEEEEeccCCccHHHHHHHHHHHHHCCCCeEEeeccC---------------C-----HHHHHHHHHcCCCEEE
Confidence 6799999988766 2279999999999999999997762 2 2333344468999986
No 86
>TIGR01305 GMP_reduct_1 guanosine monophosphate reductase, eukaryotic. A deep split separates two families of GMP reductase. This family includes both eukaryotic and some proteobacterial sequences, while the other family contains other bacterial sequences.
Probab=84.00 E-value=4.1 Score=40.54 Aligned_cols=57 Identities=16% Similarity=0.258 Sum_probs=42.8
Q ss_pred hhc--CCceeeccCcc----hHHHHHHHHHhhCCCCCEEeEecccccHHHHHHHhCCCCCHHHHHHHHHHHHHHcCCCEE
Q psy15126 211 VSQ--GADFLMVKPAL----PYLDIISEVKSRHPAYPLFVYQVSGEYAMLAFAAQAGALDLKRALMETLTCLRRGGADVI 284 (300)
Q Consensus 211 a~~--GADivmVkPsm----m~ld~Ir~~~d~~~~vpi~aY~vSgeY~~~r~Aa~~~~~n~~eal~E~~~~~~r~GAD~I 284 (300)
+++ |+|+|.|-.+- -.++.|+.+++.||+.+|++=+| ...+ ..+.+.++|||.|
T Consensus 116 ~~a~~~~d~iviD~AhGhs~~~i~~ik~ir~~~p~~~viaGNV---------------~T~e-----~a~~Li~aGAD~i 175 (343)
T TIGR01305 116 LEAVPQLKFICLDVANGYSEHFVEFVKLVREAFPEHTIMAGNV---------------VTGE-----MVEELILSGADIV 175 (343)
T ss_pred HhcCCCCCEEEEECCCCcHHHHHHHHHHHHhhCCCCeEEEecc---------------cCHH-----HHHHHHHcCCCEE
Confidence 455 58999888772 27999999999999999998766 3332 3334557899999
Q ss_pred Eec
Q psy15126 285 ISY 287 (300)
Q Consensus 285 i~y 287 (300)
.|-
T Consensus 176 kVg 178 (343)
T TIGR01305 176 KVG 178 (343)
T ss_pred EEc
Confidence 876
No 87
>PF02548 Pantoate_transf: Ketopantoate hydroxymethyltransferase; InterPro: IPR003700 The panB gene from Escherichia coli encodes the first enzyme of the pantothenate biosynthesis pathway, ketopantoate hydroxymethyltransferase (KPHMT) 2.1.2.11 from EC. Fungal ketopantoate hydroxymethyltransferase is essential for the biosynthesis of coenzyme A, while the pathway intermediate 4'-phosphopantetheine is required for penicillin production [].; GO: 0003864 3-methyl-2-oxobutanoate hydroxymethyltransferase activity, 0015940 pantothenate biosynthetic process; PDB: 3VAV_G 1M3U_A 3EZ4_J 1O68_C 1O66_A 1OY0_D.
Probab=83.81 E-value=0.91 Score=43.39 Aligned_cols=70 Identities=17% Similarity=0.235 Sum_probs=46.8
Q ss_pred hcCCceeeccCcc-h------------------HHHHHHHHHhh---CCCCCEEeEecccccHHHHHHHhCCCCCHHHHH
Q psy15126 212 SQGADFLMVKPAL-P------------------YLDIISEVKSR---HPAYPLFVYQVSGEYAMLAFAAQAGALDLKRAL 269 (300)
Q Consensus 212 ~~GADivmVkPsm-m------------------~ld~Ir~~~d~---~~~vpi~aY~vSgeY~~~r~Aa~~~~~n~~eal 269 (300)
++|.|+|.|.=|+ | ...++|+...+ --+.|.++||. +.++|+
T Consensus 34 ~agvD~iLVGDSlgmv~~G~~sT~~vtld~mi~h~~aV~Rga~~~~vv~DmPf~sy~~----------------s~e~av 97 (261)
T PF02548_consen 34 EAGVDIILVGDSLGMVVLGYDSTLPVTLDEMIYHTKAVRRGAPNAFVVADMPFGSYQA----------------SPEQAV 97 (261)
T ss_dssp HTT-SEEEE-TTHHHHTT--SSSTT--HHHHHHHHHHHHHH-TSSEEEEE--TTSSTS----------------SHHHHH
T ss_pred HcCCCEEEeCCcHHHheeCCCCCcCcCHHHHHHHHHHHHhcCCCceEEecCCcccccC----------------CHHHHH
Confidence 6899999998772 2 13445555444 24677777765 778999
Q ss_pred HHHHHHHHHcCCCEEEecchHHHHHHHh
Q psy15126 270 METLTCLRRGGADVIISYYTPRVLEWLR 297 (300)
Q Consensus 270 ~E~~~~~~r~GAD~Ii~y~A~~~ld~l~ 297 (300)
+-+.+-++++|||.|-.-.+.+.++.++
T Consensus 98 ~nA~rl~ke~GadaVKlEGg~~~~~~i~ 125 (261)
T PF02548_consen 98 RNAGRLMKEAGADAVKLEGGAEIAETIK 125 (261)
T ss_dssp HHHHHHHHTTT-SEEEEEBSGGGHHHHH
T ss_pred HHHHHHHHhcCCCEEEeccchhHHHHHH
Confidence 9999999889999999988776666554
No 88
>PRK05458 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=83.77 E-value=4.1 Score=39.84 Aligned_cols=57 Identities=19% Similarity=0.302 Sum_probs=41.2
Q ss_pred hhcCC--ceeeccCcch----HHHHHHHHHhhCCCCCEEeEecccccHHHHHHHhCCCCCHHHHHHHHHHHHHHcCCCEE
Q psy15126 211 VSQGA--DFLMVKPALP----YLDIISEVKSRHPAYPLFVYQVSGEYAMLAFAAQAGALDLKRALMETLTCLRRGGADVI 284 (300)
Q Consensus 211 a~~GA--DivmVkPsmm----~ld~Ir~~~d~~~~vpi~aY~vSgeY~~~r~Aa~~~~~n~~eal~E~~~~~~r~GAD~I 284 (300)
+++|+ |+|.|-.+.. -.+.|+++++.+|++||++=.|. +. |..+.+.++|||+|
T Consensus 106 v~ag~~~d~i~iD~a~gh~~~~~e~I~~ir~~~p~~~vi~g~V~---------------t~-----e~a~~l~~aGad~i 165 (326)
T PRK05458 106 AAEGLTPEYITIDIAHGHSDSVINMIQHIKKHLPETFVIAGNVG---------------TP-----EAVRELENAGADAT 165 (326)
T ss_pred HhcCCCCCEEEEECCCCchHHHHHHHHHHHhhCCCCeEEEEecC---------------CH-----HHHHHHHHcCcCEE
Confidence 67854 9998855533 57789999999999999997662 22 23334557899998
Q ss_pred Eec
Q psy15126 285 ISY 287 (300)
Q Consensus 285 i~y 287 (300)
++-
T Consensus 166 ~vg 168 (326)
T PRK05458 166 KVG 168 (326)
T ss_pred EEC
Confidence 754
No 89
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=82.63 E-value=8.6 Score=39.33 Aligned_cols=58 Identities=21% Similarity=0.236 Sum_probs=37.3
Q ss_pred hhcCCceeec--cCc------------chHHHHHHHHHh---hCCCCCEEeEecccccHHHHHHHhCCCCCHHHHHHHHH
Q psy15126 211 VSQGADFLMV--KPA------------LPYLDIISEVKS---RHPAYPLFVYQVSGEYAMLAFAAQAGALDLKRALMETL 273 (300)
Q Consensus 211 a~~GADivmV--kPs------------mm~ld~Ir~~~d---~~~~vpi~aY~vSgeY~~~r~Aa~~~~~n~~eal~E~~ 273 (300)
+++|||+|.| .|+ .+.+..|.++.+ ++ ++||++= =|..+. .|+.
T Consensus 300 ~~aGad~I~vg~g~Gs~~~t~~~~~~g~p~~~ai~~~~~~~~~~-~v~vIad--------------GGi~~~----~di~ 360 (495)
T PTZ00314 300 IDAGADGLRIGMGSGSICITQEVCAVGRPQASAVYHVARYARER-GVPCIAD--------------GGIKNS----GDIC 360 (495)
T ss_pred HHcCCCEEEECCcCCcccccchhccCCCChHHHHHHHHHHHhhc-CCeEEec--------------CCCCCH----HHHH
Confidence 6899999975 354 245556555543 34 6787762 133455 4566
Q ss_pred HHHHHcCCCEEEecc
Q psy15126 274 TCLRRGGADVIISYY 288 (300)
Q Consensus 274 ~~~~r~GAD~Ii~y~ 288 (300)
+.+ ..|||.+|+--
T Consensus 361 kAl-a~GA~~Vm~G~ 374 (495)
T PTZ00314 361 KAL-ALGADCVMLGS 374 (495)
T ss_pred HHH-HcCCCEEEECc
Confidence 778 69999999744
No 90
>COG0646 MetH Methionine synthase I (cobalamin-dependent), methyltransferase domain [Amino acid transport and metabolism]
Probab=82.51 E-value=6.3 Score=38.81 Aligned_cols=174 Identities=15% Similarity=0.208 Sum_probs=99.3
Q ss_pred HHHHhCCCcEEEeeecC----CCCCCCC-c-ceeeCCCCceecHHhHHHHHHHHHHHHHcCCCccccCCCCcchHHHHHH
Q psy15126 24 MIRKQFPSLTIACDVCL----CGYTSHG-H-CAIFNEDGSIHYEKTLKRLADISKAFSDAGAHIVAPSDMMDNRIHAIKQ 97 (300)
Q Consensus 24 ~ik~~~p~l~i~~Dvcl----c~yt~hG-H-cgi~~~~g~i~nd~Tl~~l~~~A~~~A~aGad~vAPSdmMDgrv~air~ 97 (300)
.+++..++=+++.|=++ -.|.-+= | -| +..+.++.|.--.+.+.++=..+.+||||+|--+.---.++..-
T Consensus 7 ~l~~~l~~rVLv~DGAmGT~lq~~~l~~~df~g-~~g~nE~LnlT~Pd~I~~IH~aY~eAGADiIeTNTFgat~i~la-- 83 (311)
T COG0646 7 QLREALKERVLVLDGAMGTMLQSYGLDEADFRG-LKGNNELLNLTKPDVIEAIHRAYIEAGADIIETNTFGATTIKLA-- 83 (311)
T ss_pred HHHHHHHcCEEEeechhhhhHHhcCCcHHhhcc-ccCChHHHhcCCcHHHHHHHHHHHhccCcEEEecCCCcchhhHh--
Confidence 44555555566677433 2232110 0 01 33346788888899999999999999999999876655555433
Q ss_pred HHhhCCCCCCcccccchhhhhcccchhhhhhhcCCCCCCCcceeeC---CCCCCceEEEEeecccCCCCCCccccccCCC
Q psy15126 98 SLFTSRQSSTTGLLSYSAKFCSAFYGPFREAAGSAPTFGDRSCYQL---PCGSKGLAIRAAVCLCGYTSHGHCAIFNEDG 174 (300)
Q Consensus 98 aLd~~g~~~~v~ImsysaK~aS~~YGPfRda~gS~~~~gdr~~yQ~---~~~~~~~ai~~dvclc~yt~hGHcgi~~~~g 174 (300)
..++. + .+|---+..+ -==|++++-.. .+|+.|-. -|-|+-+.+.- +.
T Consensus 84 ---dy~le-d---~v~~in~~aa--~iAR~aA~~~~--~~k~rfVaGsiGPt~k~~~~~~------------------~~ 134 (311)
T COG0646 84 ---DYGLE-D---KVYEINQKAA--RIARRAADEAG--DPKPRFVAGSIGPTNKTLSISP------------------DF 134 (311)
T ss_pred ---hhChH-H---HHHHHHHHHH--HHHHHHHhhcC--CCCceEEEEeccCcCCcCCcCC------------------cc
Confidence 33331 1 0010000000 01256665433 11344432 23332221111 01
Q ss_pred cccchHhHHHHHHHHHhhhcccccCCCCCccccchhhhcCCceeeccCc-ch-----HHHHHHHHHhh-CCCCCEEeEec
Q psy15126 175 SIHYEKTLKRLADISKAFSDAVYVPNHNTDRFQARDVSQGADFLMVKPA-LP-----YLDIISEVKSR-HPAYPLFVYQV 247 (300)
Q Consensus 175 ~i~nd~tl~~l~~~a~~~a~~~~~~~~n~~~~~~~Da~~GADivmVkPs-mm-----~ld~Ir~~~d~-~~~vpi~aY~v 247 (300)
.+..|.-.+...+|...+ ++.|||++++.-- .. -+-++|++-++ ...+|||.-..
T Consensus 135 ~v~fd~l~~ay~eq~~~L------------------i~gG~D~iLiET~~D~l~~KaA~~a~~~~~~~~~~~LPv~~s~T 196 (311)
T COG0646 135 AVTFDELVEAYREQVEGL------------------IDGGADLILIETIFDTLNAKAAVFAAREVFEELGVRLPVMISGT 196 (311)
T ss_pred cccHHHHHHHHHHHHHHH------------------HhCCCcEEEEehhccHHHHHHHHHHHHHHHHhcCCcccEEEEEE
Confidence 467788888889998888 8999999988875 22 35566666654 45799998765
No 91
>PRK08645 bifunctional homocysteine S-methyltransferase/5,10-methylenetetrahydrofolate reductase protein; Reviewed
Probab=82.44 E-value=68 Score=33.62 Aligned_cols=79 Identities=11% Similarity=0.109 Sum_probs=53.5
Q ss_pred ChHHHHHHHHHHhC-CCcEEEeeecCCCCCCCCcceeeCCCCceecHHhHHHHHHHHHHHHHcCCCccccCCCCcc-hHH
Q psy15126 16 NPLFQVIPMIRKQF-PSLTIACDVCLCGYTSHGHCAIFNEDGSIHYEKTLKRLADISKAFSDAGAHIVAPSDMMDN-RIH 93 (300)
Q Consensus 16 ~~~~~~i~~ik~~~-p~l~i~~Dvclc~yt~hGHcgi~~~~g~i~nd~Tl~~l~~~A~~~A~aGad~vAPSdmMDg-rv~ 93 (300)
.+..++++.-|+.. ....|+.++ .||...| ..|.+..+.-.+...+|+..++++|+|+++--.|.+- -..
T Consensus 83 ~l~~~av~lAr~a~~~~~~Vagsi--GP~g~~~------~~~~~~~~~~~~~~~~~~~~l~~~gvD~l~~ET~~~~~Ea~ 154 (612)
T PRK08645 83 EINRAAVRLAREAAGDDVYVAGTI--GPIGGRG------PLGDISLEEIRREFREQIDALLEEGVDGLLLETFYDLEELL 154 (612)
T ss_pred HHHHHHHHHHHHHhcCCCeEEEeC--CCCCCCC------CCCCCCHHHHHHHHHHHHHHHHhcCCCEEEEEccCCHHHHH
Confidence 35566777777766 347777774 4665542 2344666777778888999999999999999777653 244
Q ss_pred HHHHHHhhC
Q psy15126 94 AIKQSLFTS 102 (300)
Q Consensus 94 air~aLd~~ 102 (300)
++.+++.+.
T Consensus 155 a~~~a~~~~ 163 (612)
T PRK08645 155 LALEAAREK 163 (612)
T ss_pred HHHHHHHHh
Confidence 555555443
No 92
>TIGR00262 trpA tryptophan synthase, alpha subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.
Probab=82.08 E-value=9.1 Score=35.72 Aligned_cols=64 Identities=17% Similarity=0.347 Sum_probs=36.6
Q ss_pred HHHHHHHHhhCCCCCE--EeEec-ccccHH---HHHHHhCCC-------CCHHHHHHHHHHHHHHcCCCEE-EecchHH
Q psy15126 227 LDIISEVKSRHPAYPL--FVYQV-SGEYAM---LAFAAQAGA-------LDLKRALMETLTCLRRGGADVI-ISYYTPR 291 (300)
Q Consensus 227 ld~Ir~~~d~~~~vpi--~aY~v-SgeY~~---~r~Aa~~~~-------~n~~eal~E~~~~~~r~GAD~I-i~y~A~~ 291 (300)
++.++++++.++++|+ |.|.- --.||. ++.+++.|. ...+ -..|.+..+++.|.+.| ++.|..+
T Consensus 75 ~~~v~~ir~~~~~~plv~m~Y~Npi~~~G~e~f~~~~~~aGvdgviipDlp~e-e~~~~~~~~~~~gl~~i~lv~P~T~ 152 (256)
T TIGR00262 75 FELLKKVRQKHPNIPIGLLTYYNLIFRKGVEEFYAKCKEVGVDGVLVADLPLE-ESGDLVEAAKKHGVKPIFLVAPNAD 152 (256)
T ss_pred HHHHHHHHhcCCCCCEEEEEeccHHhhhhHHHHHHHHHHcCCCEEEECCCChH-HHHHHHHHHHHCCCcEEEEECCCCC
Confidence 5667787765456774 44421 112333 334555552 2223 34677777878898855 7777554
No 93
>PRK13475 ribulose bisphosphate carboxylase; Provisional
Probab=81.35 E-value=12 Score=38.38 Aligned_cols=139 Identities=10% Similarity=0.151 Sum_probs=84.5
Q ss_pred HHhHHHHHHHHHHHHHcCCCccc--------cCCCCcchHHHHHHHHhhCCCCCCcccccchhhhhcccchhhhhhhcCC
Q psy15126 61 EKTLKRLADISKAFSDAGAHIVA--------PSDMMDNRIHAIKQSLFTSRQSSTTGLLSYSAKFCSAFYGPFREAAGSA 132 (300)
Q Consensus 61 d~Tl~~l~~~A~~~A~aGad~vA--------PSdmMDgrv~air~aLd~~g~~~~v~ImsysaK~aS~~YGPfRda~gS~ 132 (300)
=.|.+.+++++..++..| |+|= |-.-+.-|+.++.+++++..-. .
T Consensus 170 GLsp~~~a~~~ye~~~Gg-D~IKDDE~l~~q~f~p~~eRv~~~~~ai~~a~~e-T------------------------- 222 (443)
T PRK13475 170 GLRPEPFAEACYDFWLGG-DFIKNDEPQGNQVFAPLKKTVPLVADAMKRAQDE-T------------------------- 222 (443)
T ss_pred cCCHHHHHHHHHHHHhcC-CcccccccccCCCCCCHHHHHHHHHHHHHHHHHh-h-------------------------
Confidence 368899999999999986 9873 2445667777777777766542 1
Q ss_pred CCCCCcceeeCCCCCCceEEEEeecccCCCCCCccccccCCCcccchHhHHHHHHHHHhhhcccccCCCCCccccchhhh
Q psy15126 133 PTFGDRSCYQLPCGSKGLAIRAAVCLCGYTSHGHCAIFNEDGSIHYEKTLKRLADISKAFSDAVYVPNHNTDRFQARDVS 212 (300)
Q Consensus 133 ~~~gdr~~yQ~~~~~~~~ai~~dvclc~yt~hGHcgi~~~~g~i~nd~tl~~l~~~a~~~a~~~~~~~~n~~~~~~~Da~ 212 (300)
|.++.|.++-..+ +.+.+.+.+..- .+
T Consensus 223 ---G~~~~y~~NiTa~--------------------------------~~~em~~ra~~a------------------~e 249 (443)
T PRK13475 223 ---GEAKLFSANITAD--------------------------------DHYEMIARGEYI------------------LE 249 (443)
T ss_pred ---CCceeEeccCCCC--------------------------------CHHHHHHHHHHH------------------HH
Confidence 5566676553200 112222222221 46
Q ss_pred c-CCc----eeeccCcchHHHHHHHHHhhCCCCCEEeEecccccHHHHH-HHhCCCCCHHHHHHHHHHHHHHcCCCEEEe
Q psy15126 213 Q-GAD----FLMVKPALPYLDIISEVKSRHPAYPLFVYQVSGEYAMLAF-AAQAGALDLKRALMETLTCLRRGGADVIIS 286 (300)
Q Consensus 213 ~-GAD----ivmVkPsmm~ld~Ir~~~d~~~~vpi~aY~vSgeY~~~r~-Aa~~~~~n~~eal~E~~~~~~r~GAD~Ii~ 286 (300)
+ |++ .+||.+-..=++.++.+.+.++++||+++-+ ..|.+-. --+.|+ .. .++-.+..+ +|||.|.+
T Consensus 250 ~~G~~~~~~~vmv~~~~~G~~al~~lr~~~~~l~ihaHrA--~~ga~~r~~~~~Gi-s~--~vl~Kl~RL--aGaD~ih~ 322 (443)
T PRK13475 250 TFGENADHVAFLVDGYVAGPGAVTTARRQYPDQYLHYHRA--GHGAVTSPSSKRGY-TA--FVLSKMARL--QGASGIHT 322 (443)
T ss_pred hcCCCccceEEEEcCccchHHHHHHHHhcCCCcEEEeccc--cchhhhcCCCCCCE-eH--HHHHHHHHH--cCCCcccc
Confidence 6 888 7888887555677777766567999999855 3333211 112343 22 334444444 79999864
No 94
>cd00945 Aldolase_Class_I Class I aldolases. The class I aldolases use an active-site lysine which stablilzes a reaction intermediates via Schiff base formation, and have TIM beta/alpha barrel fold. The members of this family include 2-keto-3-deoxy-6-phosphogluconate (KDPG) and 2-keto-4-hydroxyglutarate (KHG) aldolases, transaldolase, dihydrodipicolinate synthase sub-family, Type I 3-dehydroquinate dehydratase, DeoC and DhnA proteins, and metal-independent fructose-1,6-bisphosphate aldolase. Although structurally similar, the class II aldolases use a different mechanism and are believed to have an independent evolutionary origin.
Probab=80.73 E-value=15 Score=30.51 Aligned_cols=62 Identities=19% Similarity=0.188 Sum_probs=38.7
Q ss_pred hhcCCceeeccCcchHHHHHHHHHhhCC--CCCEEeEecccccHHHHHHHhCCCCCHHHHHHHHHHHHHHcCCCEEEecc
Q psy15126 211 VSQGADFLMVKPALPYLDIISEVKSRHP--AYPLFVYQVSGEYAMLAFAAQAGALDLKRALMETLTCLRRGGADVIISYY 288 (300)
Q Consensus 211 a~~GADivmVkPsmm~ld~Ir~~~d~~~--~vpi~aY~vSgeY~~~r~Aa~~~~~n~~eal~E~~~~~~r~GAD~Ii~y~ 288 (300)
++.|+|.|.+-+ ..++.+.+..+ ++|+++= ++.. .++...++++.++.... +.|||.|++.+
T Consensus 23 ~~~gv~gi~~~g-----~~i~~~~~~~~~~~~~v~~~-v~~~---------~~~~~~~~~~~~a~~a~-~~Gad~i~v~~ 86 (201)
T cd00945 23 IEYGFAAVCVNP-----GYVRLAADALAGSDVPVIVV-VGFP---------TGLTTTEVKVAEVEEAI-DLGADEIDVVI 86 (201)
T ss_pred HHhCCcEEEECH-----HHHHHHHHHhCCCCCeEEEE-ecCC---------CCCCcHHHHHHHHHHHH-HcCCCEEEEec
Confidence 578999997776 66666666544 4887753 3111 01123556666555555 79999998854
No 95
>PRK03620 5-dehydro-4-deoxyglucarate dehydratase; Provisional
Probab=80.60 E-value=22 Score=33.58 Aligned_cols=38 Identities=18% Similarity=0.274 Sum_probs=27.9
Q ss_pred hhcCCceeeccCcc-h------HHHHHHHHHhhCCCCCEEeEeccc
Q psy15126 211 VSQGADFLMVKPAL-P------YLDIISEVKSRHPAYPLFVYQVSG 249 (300)
Q Consensus 211 a~~GADivmVkPsm-m------~ld~Ir~~~d~~~~vpi~aY~vSg 249 (300)
.+.|||.|||-|-. . .++..+++.+.. ++||+.|+-+|
T Consensus 98 ~~~Gadav~~~pP~y~~~~~~~i~~~f~~va~~~-~lpi~lYn~~g 142 (303)
T PRK03620 98 ERAGADGILLLPPYLTEAPQEGLAAHVEAVCKST-DLGVIVYNRDN 142 (303)
T ss_pred HHhCCCEEEECCCCCCCCCHHHHHHHHHHHHHhC-CCCEEEEcCCC
Confidence 56899999988862 1 356666666665 79999998654
No 96
>PRK08444 hypothetical protein; Provisional
Probab=80.47 E-value=9.6 Score=37.34 Aligned_cols=79 Identities=23% Similarity=0.369 Sum_probs=53.4
Q ss_pred hHhHHHHHHHHHhhhcccccCCCCCccccchhhhcCC-ceeecc---Ccch---HHHHHHHHHhhCCCCCEEeEeccccc
Q psy15126 179 EKTLKRLADISKAFSDAVYVPNHNTDRFQARDVSQGA-DFLMVK---PALP---YLDIISEVKSRHPAYPLFVYQVSGEY 251 (300)
Q Consensus 179 d~tl~~l~~~a~~~a~~~~~~~~n~~~~~~~Da~~GA-DivmVk---Psmm---~ld~Ir~~~d~~~~vpi~aY~vSgeY 251 (300)
.-|.+.+.+.+... .+.|+ -+.||. |... |.++||.+|+.+|++-|-+++.
T Consensus 79 ~ls~eeI~~~a~~a------------------~~~G~~ei~iv~G~~p~~~~e~y~e~ir~Ik~~~p~i~i~a~s~---- 136 (353)
T PRK08444 79 TMSHEEILEIVKNS------------------VKRGIKEVHIVSAHNPNYGYEWYLEIFKKIKEAYPNLHVKAMTA---- 136 (353)
T ss_pred cCCHHHHHHHHHHH------------------HHCCCCEEEEeccCCCCCCHHHHHHHHHHHHHHCCCceEeeCCH----
Confidence 34666666666654 56788 455554 4432 8999999999999999988854
Q ss_pred HHHHHHH-hCCCCCHHHHHHHHHHHHHHcCCCEE
Q psy15126 252 AMLAFAA-QAGALDLKRALMETLTCLRRGGADVI 284 (300)
Q Consensus 252 ~~~r~Aa-~~~~~n~~eal~E~~~~~~r~GAD~I 284 (300)
+-+.+.+ ..|. -+.|++..+|++|.|-+
T Consensus 137 ~Ei~~~a~~~g~-----~~~e~l~~LkeAGl~~~ 165 (353)
T PRK08444 137 AEVDFLSRKFGK-----SYEEVLEDMLEYGVDSM 165 (353)
T ss_pred HHHHHHHHHcCC-----CHHHHHHHHHHhCcccC
Confidence 2333333 2444 24678888989999853
No 97
>cd00381 IMPDH IMPDH: The catalytic domain of the inosine monophosphate dehydrogenase. IMPDH catalyzes the NAD-dependent oxidation of inosine 5'-monophosphate (IMP) to xanthosine 5' monophosphate (XMP). It is a rate-limiting step in the de novo synthesis of the guanine nucleotides. There is often a CBS domain inserted in the middle of this domain, which is proposed to play a regulatory role. IMPDH is a key enzyme in the regulation of cell proliferation and differentiation. It has been identified as an attractive target for developing chemotherapeutic agents.
Probab=80.38 E-value=6 Score=38.09 Aligned_cols=56 Identities=23% Similarity=0.354 Sum_probs=39.1
Q ss_pred hhcCCceeeccCc----chHHHHHHHHHhhCCCCCEEeEecccccHHHHHHHhCCCCCHHHHHHHHHHHHHHcCCCEEEe
Q psy15126 211 VSQGADFLMVKPA----LPYLDIISEVKSRHPAYPLFVYQVSGEYAMLAFAAQAGALDLKRALMETLTCLRRGGADVIIS 286 (300)
Q Consensus 211 a~~GADivmVkPs----mm~ld~Ir~~~d~~~~vpi~aY~vSgeY~~~r~Aa~~~~~n~~eal~E~~~~~~r~GAD~Ii~ 286 (300)
+++|+|+|.|-.+ ...++.|+++++.+|++||++=++ .+.++| ..+.++|||+|++
T Consensus 103 ~eagv~~I~vd~~~G~~~~~~~~i~~ik~~~p~v~Vi~G~v---------------~t~~~A-----~~l~~aGaD~I~v 162 (325)
T cd00381 103 VEAGVDVIVIDSAHGHSVYVIEMIKFIKKKYPNVDVIAGNV---------------VTAEAA-----RDLIDAGADGVKV 162 (325)
T ss_pred HhcCCCEEEEECCCCCcHHHHHHHHHHHHHCCCceEEECCC---------------CCHHHH-----HHHHhcCCCEEEE
Confidence 7899999877543 226888999999888899997333 232222 2333689999986
No 98
>cd00959 DeoC 2-deoxyribose-5-phosphate aldolase (DERA) of the DeoC family. DERA belongs to the class I aldolases and catalyzes a reversible aldol reaction between acetaldehyde and glyceraldehyde 3-phosphate to generate 2-deoxyribose 5-phosphate. DERA is unique in catalyzing the aldol reaction between two aldehydes, and its broad substrate specificity confers considerable utility as a biocatalyst, offering an environmentally benign alternative to chiral transition metal catalysis of the asymmetric aldol reaction.
Probab=80.37 E-value=41 Score=29.86 Aligned_cols=64 Identities=22% Similarity=0.261 Sum_probs=38.8
Q ss_pred hhcCCceeeccCcc------h---HHHHHHHHHhhCCCCCEEeEecccccHHHHHHHhCCCCCHHHHHHHHHHHHHHcCC
Q psy15126 211 VSQGADFLMVKPAL------P---YLDIISEVKSRHPAYPLFVYQVSGEYAMLAFAAQAGALDLKRALMETLTCLRRGGA 281 (300)
Q Consensus 211 a~~GADivmVkPsm------m---~ld~Ir~~~d~~~~vpi~aY~vSgeY~~~r~Aa~~~~~n~~eal~E~~~~~~r~GA 281 (300)
++.|||-|-|-+.. . ...-|+++.+...+.|+..- .+.+.++.++...=+..++ ++||
T Consensus 79 ~~~GAdevdvv~~~g~~~~~~~~~~~~ei~~v~~~~~g~~lkvI------------~e~~~l~~~~i~~a~ria~-e~Ga 145 (203)
T cd00959 79 IADGADEIDMVINIGALKSGDYEAVYEEIAAVVEACGGAPLKVI------------LETGLLTDEEIIKACEIAI-EAGA 145 (203)
T ss_pred HHcCCCEEEEeecHHHHhCCCHHHHHHHHHHHHHhcCCCeEEEE------------EecCCCCHHHHHHHHHHHH-HhCC
Confidence 67899887554431 1 45566666666447887762 1333445444434444455 7999
Q ss_pred CEEEec
Q psy15126 282 DVIISY 287 (300)
Q Consensus 282 D~Ii~y 287 (300)
|+|=|.
T Consensus 146 D~IKTs 151 (203)
T cd00959 146 DFIKTS 151 (203)
T ss_pred CEEEcC
Confidence 999997
No 99
>PRK11320 prpB 2-methylisocitrate lyase; Provisional
Probab=80.31 E-value=7.4 Score=37.50 Aligned_cols=67 Identities=22% Similarity=0.375 Sum_probs=45.6
Q ss_pred hhcCCceeeccCcchHHHHHHHHHhhCCCCCEEeEecccccH-----HHHHHHhCCC----------CCHHHHHHHHHHH
Q psy15126 211 VSQGADFLMVKPALPYLDIISEVKSRHPAYPLFVYQVSGEYA-----MLAFAAQAGA----------LDLKRALMETLTC 275 (300)
Q Consensus 211 a~~GADivmVkPsmm~ld~Ir~~~d~~~~vpi~aY~vSgeY~-----~~r~Aa~~~~----------~n~~eal~E~~~~ 275 (300)
+++|||+|+| |++--++-|+++.+.. ++|++.=-+ +|+ .++.-.++|+ ...-.++.+.+..
T Consensus 176 ~eAGAD~ifi-~~~~~~~~i~~~~~~~-~~Pl~~n~~--~~~~~p~~s~~~L~~lGv~~v~~~~~~~~aa~~a~~~~~~~ 251 (292)
T PRK11320 176 VEAGADMIFP-EAMTELEMYRRFADAV-KVPILANIT--EFGATPLFTTEELASAGVAMVLYPLSAFRAMNKAAENVYEA 251 (292)
T ss_pred HHcCCCEEEe-cCCCCHHHHHHHHHhc-CCCEEEEec--cCCCCCCCCHHHHHHcCCcEEEEChHHHHHHHHHHHHHHHH
Confidence 7999999976 6766799999988876 589865322 222 3555555552 2345677777888
Q ss_pred HHHcCC
Q psy15126 276 LRRGGA 281 (300)
Q Consensus 276 ~~r~GA 281 (300)
+++.|-
T Consensus 252 l~~~g~ 257 (292)
T PRK11320 252 IRRDGT 257 (292)
T ss_pred HHHcCC
Confidence 877665
No 100
>COG0413 PanB Ketopantoate hydroxymethyltransferase [Coenzyme metabolism]
Probab=80.18 E-value=6.4 Score=38.08 Aligned_cols=71 Identities=20% Similarity=0.291 Sum_probs=52.1
Q ss_pred hcCCceeeccCcc-h---------------HH---HHHHHHHhh---CCCCCEEeEecccccHHHHHHHhCCCCCHHHHH
Q psy15126 212 SQGADFLMVKPAL-P---------------YL---DIISEVKSR---HPAYPLFVYQVSGEYAMLAFAAQAGALDLKRAL 269 (300)
Q Consensus 212 ~~GADivmVkPsm-m---------------~l---d~Ir~~~d~---~~~vpi~aY~vSgeY~~~r~Aa~~~~~n~~eal 269 (300)
++|.|+|.|.=|+ | ++ ..+|+.-.+ ..+.|.++|++ ..++++
T Consensus 33 ~agvd~lLVGDSlgmvv~G~~sTl~Vsl~~mi~ht~aV~Rga~~~~vv~DmPF~sy~~----------------s~~~a~ 96 (268)
T COG0413 33 QAGVDVLLVGDSLGMVVLGYDSTLPVTLEDMIYHTKAVRRGAPNAFVVADLPFGSYEV----------------SPEQAL 96 (268)
T ss_pred hcCCcEEEEeccHHHHHcCCCCcceecHHHHHHHHHHHHhcCCCeeEEeCCCCcccCC----------------CHHHHH
Confidence 5789999998873 3 11 222222222 47899999987 557888
Q ss_pred HHHHHHHHHcCCCEEEecchHHHHHHHhh
Q psy15126 270 METLTCLRRGGADVIISYYTPRVLEWLRE 298 (300)
Q Consensus 270 ~E~~~~~~r~GAD~Ii~y~A~~~ld~l~~ 298 (300)
.-+.+=+|+.|||.|=.--+.++++.+++
T Consensus 97 ~nA~r~~ke~gA~aVKlEGG~~~~~~i~~ 125 (268)
T COG0413 97 KNAARLMKEAGADAVKLEGGEEMAETIKR 125 (268)
T ss_pred HHHHHHHHHhCCCEEEEcCCHHHHHHHHH
Confidence 88888887799999999999888887653
No 101
>PRK07188 nicotinate phosphoribosyltransferase; Provisional
Probab=79.21 E-value=7.7 Score=38.36 Aligned_cols=70 Identities=16% Similarity=0.225 Sum_probs=50.1
Q ss_pred ChHHHHHHHHHHhCCC--cEEEeeecCCCCCCCCcceeeCCCCceecHHhHHHHHHHHHHHHHc-CCCc--ccc-C--C-
Q psy15126 16 NPLFQVIPMIRKQFPS--LTIACDVCLCGYTSHGHCAIFNEDGSIHYEKTLKRLADISKAFSDA-GAHI--VAP-S--D- 86 (300)
Q Consensus 16 ~~~~~~i~~ik~~~p~--l~i~~Dvclc~yt~hGHcgi~~~~g~i~nd~Tl~~l~~~A~~~A~a-Gad~--vAP-S--d- 86 (300)
|-..+|+++.++.||+ +++-.|.-. | + .+.|+..+++ |.++ |-+ | |
T Consensus 187 g~~~~A~~a~~~~~Pe~~~ivlVD~~~------------d---------~----~~~al~~a~~~g~~l~gVRlDs~gdl 241 (352)
T PRK07188 187 GDVVEACKAYHKTFPEDELIALVDYNN------------D---------V----ITDSLKVAREFGDKLKGVRVDTSKNM 241 (352)
T ss_pred CcHHHHHHHHHHHCCCCCeEEEEecCc------------c---------c----HHHHHHHHHHhCCCccEEEeCCcchH
Confidence 4567899999999997 666666210 1 1 1456677777 9999 533 2 2
Q ss_pred -------------------CCcchHHHHHHHHhhCCCCCCcccc
Q psy15126 87 -------------------MMDNRIHAIKQSLFTSRQSSTTGLL 111 (300)
Q Consensus 87 -------------------mMDgrv~air~aLd~~g~~~~v~Im 111 (300)
++.-.+..+|+.||..|+ .+|.|+
T Consensus 242 ~DK~~~~~~~~~~~~~~~G~~~~l~~~vr~~Ld~~g~-~~vkI~ 284 (352)
T PRK07188 242 IDKYFIRHPEVLGTFDPRGVNPELIKALRKALDENGG-KHVKII 284 (352)
T ss_pred hhhhcccccccccccccccccHHHHHHHHHHHhhCCC-CCcEEE
Confidence 456678899999999999 788886
No 102
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.
Probab=79.02 E-value=29 Score=34.89 Aligned_cols=59 Identities=24% Similarity=0.364 Sum_probs=38.2
Q ss_pred hhcCCceeecc--Cc------------chHHHHHHHHHhh--CCCCCEEeEecccccHHHHHHHhCCCCCHHHHHHHHHH
Q psy15126 211 VSQGADFLMVK--PA------------LPYLDIISEVKSR--HPAYPLFVYQVSGEYAMLAFAAQAGALDLKRALMETLT 274 (300)
Q Consensus 211 a~~GADivmVk--Ps------------mm~ld~Ir~~~d~--~~~vpi~aY~vSgeY~~~r~Aa~~~~~n~~eal~E~~~ 274 (300)
+++|||+|-|. |+ .+.+..|+++.+. -.++||++= =|..+. .++.+
T Consensus 283 ~~aGad~i~vg~g~G~~~~t~~~~~~g~p~~~~i~~~~~~~~~~~vpviad--------------GGi~~~----~di~k 344 (450)
T TIGR01302 283 IDAGADGLRVGIGPGSICTTRIVAGVGVPQITAVYDVAEYAAQSGIPVIAD--------------GGIRYS----GDIVK 344 (450)
T ss_pred HHhCCCEEEECCCCCcCCccceecCCCccHHHHHHHHHHHHhhcCCeEEEe--------------CCCCCH----HHHHH
Confidence 67999999765 43 1356776666543 136888762 133344 45566
Q ss_pred HHHHcCCCEEEecc
Q psy15126 275 CLRRGGADVIISYY 288 (300)
Q Consensus 275 ~~~r~GAD~Ii~y~ 288 (300)
.+ ..|||.+|+--
T Consensus 345 Al-a~GA~~V~~G~ 357 (450)
T TIGR01302 345 AL-AAGADAVMLGS 357 (450)
T ss_pred HH-HcCCCEEEECc
Confidence 77 69999999754
No 103
>TIGR01306 GMP_reduct_2 guanosine monophosphate reductase, bacterial. A deep split separates two families of GMP reductase. The other (TIGR01305) is found in eukaryotic and some proteobacterial lineages, including E. coli, while this family is found in a variety of bacterial lineages.
Probab=78.88 E-value=15 Score=36.03 Aligned_cols=65 Identities=18% Similarity=0.106 Sum_probs=43.3
Q ss_pred CccccchhhhcCCceeecc--Ccc--------------hHHHHHHHHHhhCCCCCEEeEecccccHHHHHHHhCCCCCHH
Q psy15126 203 TDRFQARDVSQGADFLMVK--PAL--------------PYLDIISEVKSRHPAYPLFVYQVSGEYAMLAFAAQAGALDLK 266 (300)
Q Consensus 203 ~~~~~~~Da~~GADivmVk--Psm--------------m~ld~Ir~~~d~~~~vpi~aY~vSgeY~~~r~Aa~~~~~n~~ 266 (300)
|-.....=+++|||.|.|. |+. +.+.+|.++.+.. ++||++=. |..+.
T Consensus 147 t~e~a~~l~~aGad~I~V~~G~G~~~~tr~~~g~g~~~~~l~ai~ev~~a~-~~pVIadG--------------GIr~~- 210 (321)
T TIGR01306 147 TPEAVRELENAGADATKVGIGPGKVCITKIKTGFGTGGWQLAALRWCAKAA-RKPIIADG--------------GIRTH- 210 (321)
T ss_pred CHHHHHHHHHcCcCEEEECCCCCccccceeeeccCCCchHHHHHHHHHHhc-CCeEEEEC--------------CcCcH-
Confidence 3344444467999999877 332 2577888888875 68887642 34444
Q ss_pred HHHHHHHHHHHHcCCCEEEec
Q psy15126 267 RALMETLTCLRRGGADVIISY 287 (300)
Q Consensus 267 eal~E~~~~~~r~GAD~Ii~y 287 (300)
..+.+.+ ..|||.+|+-
T Consensus 211 ---~Di~KAL-a~GAd~Vmig 227 (321)
T TIGR01306 211 ---GDIAKSI-RFGASMVMIG 227 (321)
T ss_pred ---HHHHHHH-HcCCCEEeec
Confidence 3445667 5899999974
No 104
>TIGR01306 GMP_reduct_2 guanosine monophosphate reductase, bacterial. A deep split separates two families of GMP reductase. The other (TIGR01305) is found in eukaryotic and some proteobacterial lineages, including E. coli, while this family is found in a variety of bacterial lineages.
Probab=78.67 E-value=7.9 Score=37.91 Aligned_cols=57 Identities=18% Similarity=0.251 Sum_probs=42.5
Q ss_pred hhcC--CceeeccCcc----hHHHHHHHHHhhCCCCCEEeEecccccHHHHHHHhCCCCCHHHHHHHHHHHHHHcCCCEE
Q psy15126 211 VSQG--ADFLMVKPAL----PYLDIISEVKSRHPAYPLFVYQVSGEYAMLAFAAQAGALDLKRALMETLTCLRRGGADVI 284 (300)
Q Consensus 211 a~~G--ADivmVkPsm----m~ld~Ir~~~d~~~~vpi~aY~vSgeY~~~r~Aa~~~~~n~~eal~E~~~~~~r~GAD~I 284 (300)
+++| +|+|.+-++- ..++.|+++++.+|..+|++=+| . -.|..+.+.++|||.|
T Consensus 103 v~a~~~~d~i~~D~ahg~s~~~~~~i~~i~~~~p~~~vi~GnV---------------~-----t~e~a~~l~~aGad~I 162 (321)
T TIGR01306 103 AEEALTPEYITIDIAHGHSNSVINMIKHIKTHLPDSFVIAGNV---------------G-----TPEAVRELENAGADAT 162 (321)
T ss_pred HhcCCCCCEEEEeCccCchHHHHHHHHHHHHhCCCCEEEEecC---------------C-----CHHHHHHHHHcCcCEE
Confidence 6778 7999888862 37899999999997666877655 1 1444556668999999
Q ss_pred Eec
Q psy15126 285 ISY 287 (300)
Q Consensus 285 i~y 287 (300)
.+-
T Consensus 163 ~V~ 165 (321)
T TIGR01306 163 KVG 165 (321)
T ss_pred EEC
Confidence 876
No 105
>TIGR02321 Pphn_pyruv_hyd phosphonopyruvate hydrolase. This family consists of phosphonopyruvate hydrolase, an enzyme closely related to phosphoenolpyruvate phosphomutase. It cleaves the direct C-P bond of phosphonopyruvate. The characterized example is from Variovorax sp. Pal2.
Probab=78.16 E-value=11 Score=36.34 Aligned_cols=68 Identities=24% Similarity=0.258 Sum_probs=39.9
Q ss_pred hhcCCceeeccCc-chHHHHHHHHHhhCC-CCCEEeEecccccH--HHHHHHhCC-----------CCCHHHHHHHHHHH
Q psy15126 211 VSQGADFLMVKPA-LPYLDIISEVKSRHP-AYPLFVYQVSGEYA--MLAFAAQAG-----------ALDLKRALMETLTC 275 (300)
Q Consensus 211 a~~GADivmVkPs-mm~ld~Ir~~~d~~~-~vpi~aY~vSgeY~--~~r~Aa~~~-----------~~n~~eal~E~~~~ 275 (300)
+++|||+|+| |+ ..-.+-|+++.++++ .+|++.-. +.+. +.....+.| +...-.++.+++..
T Consensus 176 ~eAGAD~ifv-~~~~~~~~ei~~~~~~~~~p~pv~~~~--~~~p~~~~~~l~~lg~~~~v~~g~~~~~aa~~a~~~~~~~ 252 (290)
T TIGR02321 176 EEAGADAILI-HSRQKTPDEILAFVKSWPGKVPLVLVP--TAYPQLTEADIAALSKVGIVIYGNHAIRAAVGAVREVFAR 252 (290)
T ss_pred HHcCCCEEEe-cCCCCCHHHHHHHHHhcCCCCCeEEec--CCCCCCCHHHHHHhcCCcEEEEChHHHHHHHHHHHHHHHH
Confidence 7999999988 66 346777777777753 26776321 2222 222333333 12334567777777
Q ss_pred HHHcCC
Q psy15126 276 LRRGGA 281 (300)
Q Consensus 276 ~~r~GA 281 (300)
+++.|-
T Consensus 253 i~~~g~ 258 (290)
T TIGR02321 253 IRRDGG 258 (290)
T ss_pred HHHcCC
Confidence 766553
No 106
>TIGR02317 prpB methylisocitrate lyase. Members of this family are methylisocitrate lyase, also called (2S,3R)-3-hydroxybutane-1,2,3-tricarboxylate pyruvate-lyase. This enzyme acts in propionate metabolism. It cleaves a carbon-carbon bond to convert 2-methylisocitrate to pyruvate plus succinate. Some members of this family have been annotated, incorrectly it seems, as the related protein carboxyphosphoenolpyruvate phosphomutase, which is involved in synthesizing the antibiotic bialaphos in Streptomyces hygroscopicus.
Probab=78.14 E-value=9.1 Score=36.75 Aligned_cols=69 Identities=20% Similarity=0.279 Sum_probs=45.2
Q ss_pred hhcCCceeeccCcchHHHHHHHHHhhCCCCCEEeEecc-cc--cHHHHHHHhCCC----------CCHHHHHHHHHHHHH
Q psy15126 211 VSQGADFLMVKPALPYLDIISEVKSRHPAYPLFVYQVS-GE--YAMLAFAAQAGA----------LDLKRALMETLTCLR 277 (300)
Q Consensus 211 a~~GADivmVkPsmm~ld~Ir~~~d~~~~vpi~aY~vS-ge--Y~~~r~Aa~~~~----------~n~~eal~E~~~~~~ 277 (300)
+++|||+|+| |++.-.+-|+++.++. +.|++.=-++ |. .=.++...++|+ ...-.++++.+..++
T Consensus 171 ~~AGAD~vfi-~g~~~~e~i~~~~~~i-~~Pl~~n~~~~~~~p~~s~~eL~~lGv~~v~~~~~~~~aa~~a~~~~~~~l~ 248 (285)
T TIGR02317 171 VEAGADMIFP-EALTSLEEFRQFAKAV-KVPLLANMTEFGKTPLFTADELREAGYKMVIYPVTAFRAMNKAAEAVYNEIK 248 (285)
T ss_pred HHcCCCEEEe-CCCCCHHHHHHHHHhc-CCCEEEEeccCCCCCCCCHHHHHHcCCcEEEEchHHHHHHHHHHHHHHHHHH
Confidence 7999999977 6766788888888876 4888543221 11 113555555552 244567778888887
Q ss_pred HcCC
Q psy15126 278 RGGA 281 (300)
Q Consensus 278 r~GA 281 (300)
+.|-
T Consensus 249 ~~g~ 252 (285)
T TIGR02317 249 EHGT 252 (285)
T ss_pred HcCC
Confidence 7774
No 107
>PRK09206 pyruvate kinase; Provisional
Probab=78.05 E-value=36 Score=35.07 Aligned_cols=117 Identities=15% Similarity=0.181 Sum_probs=73.5
Q ss_pred HHHcCCCccccCCCCcch-HHHHHHHHhhCCCCCCcccccchhhhhcccchhhhhhhcCCCCCCCcceeeCCCCCCceEE
Q psy15126 74 FSDAGAHIVAPSDMMDNR-IHAIKQSLFTSRQSSTTGLLSYSAKFCSAFYGPFREAAGSAPTFGDRSCYQLPCGSKGLAI 152 (300)
Q Consensus 74 ~A~aGad~vAPSdmMDgr-v~air~aLd~~g~~~~v~ImsysaK~aS~~YGPfRda~gS~~~~gdr~~yQ~~~~~~~~ai 152 (300)
..+.|+|+||.|--=... |..+|+.|...|. .++.|+
T Consensus 181 ~~~~~vD~ia~SFVr~~~Dv~~~r~~l~~~~~-~~~~ii----------------------------------------- 218 (470)
T PRK09206 181 GCEQGVDFVAASFIRKRSDVLEIREHLKAHGG-ENIQII----------------------------------------- 218 (470)
T ss_pred HHHcCCCEEEEcCCCCHHHHHHHHHHHHHcCC-CCceEE-----------------------------------------
Confidence 457888888887765555 7777888877664 233332
Q ss_pred EEeecccCCCCCCccccccCCCcccchHhHHHHHHHHHhhhcccccCCCCCccccchhhhcCCceeeccCcch-------
Q psy15126 153 RAAVCLCGYTSHGHCAIFNEDGSIHYEKTLKRLADISKAFSDAVYVPNHNTDRFQARDVSQGADFLMVKPALP------- 225 (300)
Q Consensus 153 ~~dvclc~yt~hGHcgi~~~~g~i~nd~tl~~l~~~a~~~a~~~~~~~~n~~~~~~~Da~~GADivmVkPsmm------- 225 (300)
+ +|++-+-++.|-+| ++. +|.|||+|+..
T Consensus 219 -a--------------------KIEt~eav~nldeI----------------------l~~-~DgImVaRGDLgvelg~e 254 (470)
T PRK09206 219 -S--------------------KIENQEGLNNFDEI----------------------LEA-SDGIMVARGDLGVEIPVE 254 (470)
T ss_pred -E--------------------EECCHHHHHhHHHH----------------------HHh-CCEEEECcchhhhhcCHH
Confidence 2 36677777777776 334 89999999843
Q ss_pred -----HHHHHHHHHhhCCCCCE-EeEecccccHHHHHHHhCCCCCHHHHHHHHHHHHHHcCCCEEEe
Q psy15126 226 -----YLDIISEVKSRHPAYPL-FVYQVSGEYAMLAFAAQAGALDLKRALMETLTCLRRGGADVIIS 286 (300)
Q Consensus 226 -----~ld~Ir~~~d~~~~vpi-~aY~vSgeY~~~r~Aa~~~~~n~~eal~E~~~~~~r~GAD~Ii~ 286 (300)
+=.+|+..++. +.|+ .|=|+ .-+|. .++...+.=+-.+...+ .-|+|.||.
T Consensus 255 ~vp~~qk~ii~~~~~~--gkpvI~ATqm--LeSM~-----~np~PTRAEvsDVanav-~dG~DavML 311 (470)
T PRK09206 255 EVIFAQKMMIEKCNRA--RKVVITATQM--LDSMI-----KNPRPTRAEAGDVANAI-LDGTDAVML 311 (470)
T ss_pred HHHHHHHHHHHHHHHc--CCCEEEEchh--HHHHh-----hCCCCCchhhHHHHHHh-hhCCcEEEE
Confidence 23444554543 3444 44544 22222 24555555556777777 589999998
No 108
>PRK12581 oxaloacetate decarboxylase; Provisional
Probab=78.03 E-value=78 Score=32.78 Aligned_cols=179 Identities=13% Similarity=0.101 Sum_probs=100.1
Q ss_pred HHhHHHHHHHHHHHHHcCCCccccCCCC----cchHHHHHHHHhhCCCCCCcccccchhhhhcccch----hhhhhhcCC
Q psy15126 61 EKTLKRLADISKAFSDAGAHIVAPSDMM----DNRIHAIKQSLFTSRQSSTTGLLSYSAKFCSAFYG----PFREAAGSA 132 (300)
Q Consensus 61 d~Tl~~l~~~A~~~A~aGad~vAPSdmM----Dgrv~air~aLd~~g~~~~v~ImsysaK~aS~~YG----PfRda~gS~ 132 (300)
..|++-+++.+..+.++|+|.|+..||. +.++..+-++|.+. ....+.+=++. =+| -.-.|+...
T Consensus 159 ~~t~~y~~~~a~~l~~~Gad~I~IkDtaG~l~P~~v~~Lv~alk~~-~~~pi~~H~Hn------t~GlA~An~laAieAG 231 (468)
T PRK12581 159 VHTLNYYLSLVKELVEMGADSICIKDMAGILTPKAAKELVSGIKAM-TNLPLIVHTHA------TSGISQMTYLAAVEAG 231 (468)
T ss_pred cCcHHHHHHHHHHHHHcCCCEEEECCCCCCcCHHHHHHHHHHHHhc-cCCeEEEEeCC------CCccHHHHHHHHHHcC
Confidence 4489999999999999999999998864 56666666666542 11111121110 000 001122111
Q ss_pred CCCCCcceeeCCCCCCceEEEEeecccCCCCCCccccccCCCcccchHhHHHHHHHHHhhhcccccCCCCCccccchhhh
Q psy15126 133 PTFGDRSCYQLPCGSKGLAIRAAVCLCGYTSHGHCAIFNEDGSIHYEKTLKRLADISKAFSDAVYVPNHNTDRFQARDVS 212 (300)
Q Consensus 133 ~~~gdr~~yQ~~~~~~~~ai~~dvclc~yt~hGHcgi~~~~g~i~nd~tl~~l~~~a~~~a~~~~~~~~n~~~~~~~Da~ 212 (300)
.. +-|+|++|+.-- -| |= .++.++. ++. ....+
T Consensus 232 ad------------------~vD~ai~g~g~g--------ag---N~-~tE~lv~-~L~----------------~~g~~ 264 (468)
T PRK12581 232 AD------------------RIDTALSPFSEG--------TS---QP-ATESMYL-ALK----------------EAGYD 264 (468)
T ss_pred CC------------------EEEeeccccCCC--------cC---Ch-hHHHHHH-HHH----------------hcCCC
Confidence 11 346666655321 01 11 2222221 111 11244
Q ss_pred cCCceeeccCcchHHHHHHHHHhh---------CCCCCEEeEec-ccccHHHHHHH-hCCCCCHHHHHHHHHHHHHHcCC
Q psy15126 213 QGADFLMVKPALPYLDIISEVKSR---------HPAYPLFVYQV-SGEYAMLAFAA-QAGALDLKRALMETLTCLRRGGA 281 (300)
Q Consensus 213 ~GADivmVkPsmm~ld~Ir~~~d~---------~~~vpi~aY~v-SgeY~~~r~Aa-~~~~~n~~eal~E~~~~~~r~GA 281 (300)
-|-|+-.+...-.|+..||+.-.. -++.-+.-||+ -|-|+-++.=+ ++|..|+=+.++|-.-..++..-
T Consensus 265 tgiDl~~L~~~a~~~~~vr~~y~~~~~~~~~~~~~d~~v~~hqiPGGm~snl~~Ql~~~g~~dr~~ev~~e~~~V~~~lG 344 (468)
T PRK12581 265 ITLDETLLEQAANHLRQARQKYLADGILDPSLLFPDPRTLQYQVPGGMLSNMLSQLKQANAESKLEEVLAEVPRVRKDLG 344 (468)
T ss_pred CCcCHHHHHHHHHHHHHHHHHhcccccCCCccCCCCcceeeCCCCcchHHHHHHHHHHCCcHhhHHHHHHHHHHHHHHcC
Confidence 565553222223366666665431 24666777888 67777666543 67888886666666666767889
Q ss_pred CEEEecchHHHH
Q psy15126 282 DVIISYYTPRVL 293 (300)
Q Consensus 282 D~Ii~y~A~~~l 293 (300)
+.++|-|..++.
T Consensus 345 ~p~~VTP~Sqiv 356 (468)
T PRK12581 345 YPPLVTPLSQMV 356 (468)
T ss_pred CCCEECChhHHH
Confidence 999999987764
No 109
>PLN02424 ketopantoate hydroxymethyltransferase
Probab=77.66 E-value=73 Score=31.81 Aligned_cols=142 Identities=14% Similarity=0.216 Sum_probs=90.9
Q ss_pred HHHHHHHHHHhCCCcEEEeeecCCCCCCCCcceeeCCCCceecHHhHHHHHHHHHHH-HHcCCCccccCCCCcchHHHHH
Q psy15126 18 LFQVIPMIRKQFPSLTIACDVCLCGYTSHGHCAIFNEDGSIHYEKTLKRLADISKAF-SDAGAHIVAPSDMMDNRIHAIK 96 (300)
Q Consensus 18 ~~~~i~~ik~~~p~l~i~~Dvclc~yt~hGHcgi~~~~g~i~nd~Tl~~l~~~A~~~-A~aGad~vAPSdmMDgrv~air 96 (300)
+..-.+.+++..|.-++++|.=.-+| ..|.++.++-|..+ .++||+.|=..+-...++..||
T Consensus 83 mi~H~~aV~Rga~~a~vVaDmPfgSY-----------------~~s~e~av~nA~rl~~eaGa~aVKlEGg~~~~~~~I~ 145 (332)
T PLN02424 83 MLVHCRAVARGANRPLLVGDLPFGSY-----------------ESSTDQAVESAVRMLKEGGMDAVKLEGGSPSRVTAAK 145 (332)
T ss_pred HHHHHHHHhccCCCCEEEeCCCCCCC-----------------CCCHHHHHHHHHHHHHHhCCcEEEECCCcHHHHHHHH
Confidence 34456777888899999999865554 23567777778877 5699999998776544666666
Q ss_pred HHHhhCCCCCCcccccchhhhhcccchhhhhhhcCCCCCCCcceeeCCCCCCceEEEEeecccCCCCCCccccccCCCcc
Q psy15126 97 QSLFTSRQSSTTGLLSYSAKFCSAFYGPFREAAGSAPTFGDRSCYQLPCGSKGLAIRAAVCLCGYTSHGHCAIFNEDGSI 176 (300)
Q Consensus 97 ~aLd~~g~~~~v~ImsysaK~aS~~YGPfRda~gS~~~~gdr~~yQ~~~~~~~~ai~~dvclc~yt~hGHcgi~~~~g~i 176 (300)
... ..|. ++|.+ +|=+|+ ++.-+=+|.-.|
T Consensus 146 ~l~-~~GI----PV~gH---------------iGLtPQ-------------------s~~~lGGykvqG----------- 175 (332)
T PLN02424 146 AIV-EAGI----AVMGH---------------VGLTPQ-------------------AISVLGGFRPQG----------- 175 (332)
T ss_pred HHH-HcCC----CEEEe---------------ecccce-------------------eehhhcCccccC-----------
Confidence 555 7777 35533 222222 010011111111
Q ss_pred cchHhHHHHHHHHHhhhcccccCCCCCccccchhhhcCCceeeccCcchHHHHHHHHHhhCCCCCEEeEec
Q psy15126 177 HYEKTLKRLADISKAFSDAVYVPNHNTDRFQARDVSQGADFLMVKPALPYLDIISEVKSRHPAYPLFVYQV 247 (300)
Q Consensus 177 ~nd~tl~~l~~~a~~~a~~~~~~~~n~~~~~~~Da~~GADivmVkPsmm~ld~Ir~~~d~~~~vpi~aY~v 247 (300)
..++..+.|.+.|+.+ .++||+.| |=|..+-- .++++-++. .+|++...+
T Consensus 176 r~~~~a~~li~dA~al------------------e~AGAf~i-vLE~Vp~~-la~~It~~l-~IPtIGIGA 225 (332)
T PLN02424 176 RTAESAVKVVETALAL------------------QEAGCFAV-VLECVPAP-VAAAITSAL-QIPTIGIGA 225 (332)
T ss_pred CCHHHHHHHHHHHHHH------------------HHcCCcEE-EEcCCcHH-HHHHHHHhC-CCCEEeecC
Confidence 1245677888889888 69999998 55666544 777777775 688886643
No 110
>PRK07114 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=77.63 E-value=61 Score=30.17 Aligned_cols=130 Identities=19% Similarity=0.224 Sum_probs=0.0
Q ss_pred eecHHhHHHHHHHHHHHHHcCCCccccCCCCcchHHHHHHHHhhCCCCCCcccccchhhhhcccchhhhhhhcCCCCCCC
Q psy15126 58 IHYEKTLKRLADISKAFSDAGAHIVAPSDMMDNRIHAIKQSLFTSRQSSTTGLLSYSAKFCSAFYGPFREAAGSAPTFGD 137 (300)
Q Consensus 58 i~nd~Tl~~l~~~A~~~A~aGad~vAPSdmMDgrv~air~aLd~~g~~~~v~ImsysaK~aS~~YGPfRda~gS~~~~gd 137 (300)
|....+.+...+++..+.+.|+.++-..---++-...|++....-+-.
T Consensus 20 Vvr~~~~~~a~~~~~al~~gGi~~iEiT~~tp~a~~~i~~l~~~~~~~-------------------------------- 67 (222)
T PRK07114 20 VFYHADVEVAKKVIKACYDGGARVFEFTNRGDFAHEVFAELVKYAAKE-------------------------------- 67 (222)
T ss_pred EEEcCCHHHHHHHHHHHHHCCCCEEEEeCCCCcHHHHHHHHHHHHHhh--------------------------------
Q ss_pred cceeeCCCCCCceEEEEeecccCCCCCCccccccCCCcccchHhHHHHHHHHHhhhcccccCCCCCccccchhhhcCCce
Q psy15126 138 RSCYQLPCGSKGLAIRAAVCLCGYTSHGHCAIFNEDGSIHYEKTLKRLADISKAFSDAVYVPNHNTDRFQARDVSQGADF 217 (300)
Q Consensus 138 r~~yQ~~~~~~~~ai~~dvclc~yt~hGHcgi~~~~g~i~nd~tl~~l~~~a~~~a~~~~~~~~n~~~~~~~Da~~GADi 217 (300)
.|++.|=+ |.|.+-++++.. +++||++
T Consensus 68 ---------~p~~~vGa-------------------GTVl~~e~a~~a-------------------------~~aGA~F 94 (222)
T PRK07114 68 ---------LPGMILGV-------------------GSIVDAATAALY-------------------------IQLGANF 94 (222)
T ss_pred ---------CCCeEEee-------------------EeCcCHHHHHHH-------------------------HHcCCCE
Q ss_pred eeccCcchHHHHHHHHHhhCCCCCEEeEecccccHHHHHHHhCCCCCHHHHHHHHHHHHHHcCCCEEEecch----HHHH
Q psy15126 218 LMVKPALPYLDIISEVKSRHPAYPLFVYQVSGEYAMLAFAAQAGALDLKRALMETLTCLRRGGADVIISYYT----PRVL 293 (300)
Q Consensus 218 vmVkPsmm~ld~Ir~~~d~~~~vpi~aY~vSgeY~~~r~Aa~~~~~n~~eal~E~~~~~~r~GAD~Ii~y~A----~~~l 293 (300)
+ |.|. .--++++..++. ++|++.=.. -.-|.+..+ +.|||+|=++|| +.|+
T Consensus 95 i-VsP~-~~~~v~~~~~~~--~i~~iPG~~--------------------TpsEi~~A~-~~Ga~~vKlFPA~~~G~~~i 149 (222)
T PRK07114 95 I-VTPL-FNPDIAKVCNRR--KVPYSPGCG--------------------SLSEIGYAE-ELGCEIVKLFPGSVYGPGFV 149 (222)
T ss_pred E-ECCC-CCHHHHHHHHHc--CCCEeCCCC--------------------CHHHHHHHH-HCCCCEEEECcccccCHHHH
Q ss_pred HHHh
Q psy15126 294 EWLR 297 (300)
Q Consensus 294 d~l~ 297 (300)
+-|+
T Consensus 150 kal~ 153 (222)
T PRK07114 150 KAIK 153 (222)
T ss_pred HHHh
No 111
>cd00952 CHBPH_aldolase Trans-o-hydroxybenzylidenepyruvate hydratase-aldolase (HBPHA) and trans-2'-carboxybenzalpyruvate hydratase-aldolase (CBPHA). HBPHA catalyzes HBP to salicyaldehyde and pyruvate. This reaction is part of the degradative pathways for naphthalene and naphthalenesulfonates by bacteria. CBPHA is homologous to HBPHA and catalyzes the cleavage of CBP to 2-carboxylbenzaldehyde and pyruvate during the degradation of phenanthrene. They are member of the DHDPS family of Schiff-base-dependent class I aldolases.
Probab=77.39 E-value=25 Score=33.49 Aligned_cols=52 Identities=15% Similarity=0.302 Sum_probs=36.4
Q ss_pred CCcccchHhHHHHHHHHHhhhcccccCCCCCccccchhhhcCCceeeccCc------ch---HHHHHHHHHhh-CCCCCE
Q psy15126 173 DGSIHYEKTLKRLADISKAFSDAVYVPNHNTDRFQARDVSQGADFLMVKPA------LP---YLDIISEVKSR-HPAYPL 242 (300)
Q Consensus 173 ~g~i~nd~tl~~l~~~a~~~a~~~~~~~~n~~~~~~~Da~~GADivmVkPs------mm---~ld~Ir~~~d~-~~~vpi 242 (300)
+|+|+.+..-+.+... +++|+|-|+|.=| |. +..+++.+.+. --++||
T Consensus 23 ~g~iD~~~l~~lv~~l----------------------i~~Gv~Gi~v~GstGE~~~Lt~eEr~~v~~~~~~~~~grvpv 80 (309)
T cd00952 23 TDTVDLDETARLVERL----------------------IAAGVDGILTMGTFGECATLTWEEKQAFVATVVETVAGRVPV 80 (309)
T ss_pred CCCcCHHHHHHHHHHH----------------------HHcCCCEEEECcccccchhCCHHHHHHHHHHHHHHhCCCCCE
Confidence 4888887765554444 6889999877543 21 78888888876 335999
Q ss_pred EeEe
Q psy15126 243 FVYQ 246 (300)
Q Consensus 243 ~aY~ 246 (300)
++--
T Consensus 81 i~Gv 84 (309)
T cd00952 81 FVGA 84 (309)
T ss_pred EEEe
Confidence 9763
No 112
>PRK12999 pyruvate carboxylase; Reviewed
Probab=77.37 E-value=39 Score=38.30 Aligned_cols=68 Identities=18% Similarity=0.283 Sum_probs=48.1
Q ss_pred HHHHHHHHHhhC------CCCCEEeEec-ccccHHHHHHH-hCCCCCHHHHHHHHHHHHHHcCCCEEEecchHHHH
Q psy15126 226 YLDIISEVKSRH------PAYPLFVYQV-SGEYAMLAFAA-QAGALDLKRALMETLTCLRRGGADVIISYYTPRVL 293 (300)
Q Consensus 226 ~ld~Ir~~~d~~------~~vpi~aY~v-SgeY~~~r~Aa-~~~~~n~~eal~E~~~~~~r~GAD~Ii~y~A~~~l 293 (300)
|+..+|+.-..| ++.-|.-|+. -|-|+-++.=+ ++|..|+=+.++|.....++..-|+++|-|.-++.
T Consensus 806 ~~~~~r~~y~~~~~~~~~~~~~v~~~~~PGG~~snl~~q~~~~g~~~~~~~v~~~~~~v~~~~G~~~~VTP~Sq~v 881 (1146)
T PRK12999 806 YWEAVRPYYAPFESGLKSPTTEVYLHEMPGGQYSNLKQQARALGLGDRFEEVKEMYAAVNRMFGDIVKVTPSSKVV 881 (1146)
T ss_pred HHHHHHhHhhccCCCCCCCCcCeEEecCCCcccchHHHHHHHCChHhHHHHHHHHHHHHHHHcCCCceeCccchhh
Confidence 666666655332 3444666777 77788777544 67999986667777777778899999999976653
No 113
>PF13714 PEP_mutase: Phosphoenolpyruvate phosphomutase; PDB: 1ZLP_A 3EOO_C 1UJQ_D 1O5Q_A 2DUA_A 2HJP_A 2HRW_A 2QIW_A 3KZ2_B 3IH1_B ....
Probab=76.71 E-value=14 Score=34.48 Aligned_cols=34 Identities=26% Similarity=0.390 Sum_probs=25.0
Q ss_pred hhcCCceeeccCcchHHHHHHHHHhhCCCCCEEeEe
Q psy15126 211 VSQGADFLMVKPALPYLDIISEVKSRHPAYPLFVYQ 246 (300)
Q Consensus 211 a~~GADivmVkPsmm~ld~Ir~~~d~~~~vpi~aY~ 246 (300)
.++|||+|+| |+..-.+-|+++.++. ++|+..-.
T Consensus 165 ~eAGAD~ifi-~~~~~~~~i~~~~~~~-~~Pl~v~~ 198 (238)
T PF13714_consen 165 AEAGADMIFI-PGLQSEEEIERIVKAV-DGPLNVNP 198 (238)
T ss_dssp HHTT-SEEEE-TTSSSHHHHHHHHHHH-SSEEEEET
T ss_pred HHcCCCEEEe-CCCCCHHHHHHHHHhc-CCCEEEEc
Confidence 7999999964 5656566688888877 69987764
No 114
>PRK09490 metH B12-dependent methionine synthase; Provisional
Probab=75.70 E-value=25 Score=40.27 Aligned_cols=181 Identities=18% Similarity=0.292 Sum_probs=98.6
Q ss_pred ecHHhHHHHHHHHHHHHHcC-CCcccc-CCCCcchHHHHHHHHhhCCCCCCcccccchhhhhcccchhhhhhhcCCCCCC
Q psy15126 59 HYEKTLKRLADISKAFSDAG-AHIVAP-SDMMDNRIHAIKQSLFTSRQSSTTGLLSYSAKFCSAFYGPFREAAGSAPTFG 136 (300)
Q Consensus 59 ~nd~Tl~~l~~~A~~~A~aG-ad~vAP-SdmMDgrv~air~aLd~~g~~~~v~ImsysaK~aS~~YGPfRda~gS~~~~g 136 (300)
..+.|.+.+++.+..+++.| +.+|.= ...-+-.|.++++++...--+ . +-...-...++.+-|+
T Consensus 286 ~yd~tPe~~a~~~~~~~~~G~v~IIGGCCGTtPeHI~ala~~l~~~~p~-~--~~~~~~~~~~S~~~~~----------- 351 (1229)
T PRK09490 286 EYDETPEEMAAQIGEFAESGFLNIVGGCCGTTPEHIAAIAEAVAGLPPR-K--LPEIPVACRLSGLEPL----------- 351 (1229)
T ss_pred CCCCCHHHHHHHHHHHHHcCCCCEEEecCCCCHHHHHHHHHHHhcCCCC-C--CCCcCcceeeecceEE-----------
Confidence 46678899999999999999 898877 677778999999999642221 1 1000000112222211
Q ss_pred CcceeeCCCCCCceEEEEeecccCCCCCCccccccCCCcccchHhHHHHHHHHHhhhcccccCCCCCccccchhhhcCCc
Q psy15126 137 DRSCYQLPCGSKGLAIRAAVCLCGYTSHGHCAIFNEDGSIHYEKTLKRLADISKAFSDAVYVPNHNTDRFQARDVSQGAD 216 (300)
Q Consensus 137 dr~~yQ~~~~~~~~ai~~dvclc~yt~hGHcgi~~~~g~i~nd~tl~~l~~~a~~~a~~~~~~~~n~~~~~~~Da~~GAD 216 (300)
.+++..+-+.|=+- | +..|---+- .-..+...+...++|..+ +++|||
T Consensus 352 -----~~~~~~~~~~IGER-~----N~~G~k~~~----~~i~~~d~~~al~~A~~q------------------ve~GA~ 399 (1229)
T PRK09490 352 -----NIDDDSLFVNVGER-T----NVTGSAKFA----RLIKEEDYDEALDVARQQ------------------VENGAQ 399 (1229)
T ss_pred -----eecCCCcccccccc-c----chhccHHHH----HHHHcCCHHHHHHHHHHH------------------HHCCCC
Confidence 11211111111000 0 000000000 011123334445555555 899999
Q ss_pred eeeccCcch----------HHHHHHHHHhhCCCCCEEeEecccccHHHHHHHhC--C-----CCCHH---HHHHHHHHHH
Q psy15126 217 FLMVKPALP----------YLDIISEVKSRHPAYPLFVYQVSGEYAMLAFAAQA--G-----ALDLK---RALMETLTCL 276 (300)
Q Consensus 217 ivmVkPsmm----------~ld~Ir~~~d~~~~vpi~aY~vSgeY~~~r~Aa~~--~-----~~n~~---eal~E~~~~~ 276 (300)
+|=|.|+.. .+..|+...+ ..++||+.= |....-+..|.+. | -++.+ +-+.+.+.-+
T Consensus 400 iIDVn~g~~~id~~eem~rvv~~i~~~~~-~~~vPlsID--S~~~~ViEaaLk~~~G~~IINSIs~~~~~~~~~~~~~l~ 476 (1229)
T PRK09490 400 IIDINMDEGMLDSEAAMVRFLNLIASEPD-IARVPIMID--SSKWEVIEAGLKCIQGKGIVNSISLKEGEEKFIEHARLV 476 (1229)
T ss_pred EEEECCCCCCCCHHHHHHHHHHHHHhhhc-cCCceEEEe--CCcHHHHHHHHhhcCCCCEEEeCCCCCCCccHHHHHHHH
Confidence 999988743 2333433333 247898765 6688888888763 2 22222 2344566666
Q ss_pred HHcCCCEEEecc
Q psy15126 277 RRGGADVIISYY 288 (300)
Q Consensus 277 ~r~GAD~Ii~y~ 288 (300)
++-||-+|+...
T Consensus 477 ~kyga~vV~m~~ 488 (1229)
T PRK09490 477 RRYGAAVVVMAF 488 (1229)
T ss_pred HHhCCCEEEEec
Confidence 678999988765
No 115
>cd00958 DhnA Class I fructose-1,6-bisphosphate (FBP) aldolases of the archaeal type (DhnA homologs) found in bacteria and archaea. Catalysis of the enzymes proceeds via a Schiff-base mechanism like other class I aldolases, although this subfamily is clearly divergent based on sequence similarity to other class I and class II (metal dependent) aldolase subfamilies.
Probab=75.12 E-value=57 Score=29.10 Aligned_cols=64 Identities=16% Similarity=0.134 Sum_probs=39.0
Q ss_pred hhcCCceeeccCcchHHHHHHHHHhhCCCCCEEeEecccccHHHHHHHhCCCCCHHHHHHHHHHHHHHcCCCEEEecch
Q psy15126 211 VSQGADFLMVKPALPYLDIISEVKSRHPAYPLFVYQVSGEYAMLAFAAQAGALDLKRALMETLTCLRRGGADVIISYYT 289 (300)
Q Consensus 211 a~~GADivmVkPsmm~ld~Ir~~~d~~~~vpi~aY~vSgeY~~~r~Aa~~~~~n~~eal~E~~~~~~r~GAD~Ii~y~A 289 (300)
.+.|||+|-+.+. .-++.++++.+.. .+|+.+ || | .+..+.+++ .|.+..+.+.||+-|.+-.+
T Consensus 153 ~~~GaD~Ik~~~~-~~~~~~~~i~~~~-~~pvv~---~G--G-------~~~~~~~~~-l~~~~~~~~~Ga~gv~vg~~ 216 (235)
T cd00958 153 AELGADIVKTKYT-GDAESFKEVVEGC-PVPVVI---AG--G-------PKKDSEEEF-LKMVYDAMEAGAAGVAVGRN 216 (235)
T ss_pred HHHCCCEEEecCC-CCHHHHHHHHhcC-CCCEEE---eC--C-------CCCCCHHHH-HHHHHHHHHcCCcEEEechh
Confidence 5789999944322 2478888888875 588743 22 1 122344444 45555555789998876443
No 116
>cd08205 RuBisCO_IV_RLP Ribulose bisphosphate carboxylase like proteins, Rubisco-Form IV. Ribulose bisphosphate carboxylase (Rubisco) plays an important role in the Calvin reductive pentose phosphate pathway. It catalyzes the primary CO2 fixation step. Rubisco is activated by carbamylation of an active site lysine, stabilized by a divalent cation, which then catalyzes the proton abstraction from the substrate ribulose 1,5 bisphosphate (RuBP) and leads to the formation of two molecules of 3-phosphoglycerate. Members of the Rubisco family can be divided into 4 subgroups, Form I-IV, which differ in their taxonomic distribution and subunit composition. Form I-III have Rubisco activity, while Form IV, also called Rubisco-like proteins (RLP), are missing critical active site residues and therefore do not catalyze CO2 fixation. They are believed to utilize a related enzymatic mechanism, but have divergent functions, like for example 2,3-diketo-5-methylthiopentyl-1-phosphate enolase or 5-methyl
Probab=74.76 E-value=15 Score=36.16 Aligned_cols=65 Identities=17% Similarity=0.185 Sum_probs=40.3
Q ss_pred hhcCCceeeccCc--------ch---HHHHHHHHHhhCC----CCCEEeEecccccHHHHHHHhCCCCCHHHHHHHHHHH
Q psy15126 211 VSQGADFLMVKPA--------LP---YLDIISEVKSRHP----AYPLFVYQVSGEYAMLAFAAQAGALDLKRALMETLTC 275 (300)
Q Consensus 211 a~~GADivmVkPs--------mm---~ld~Ir~~~d~~~----~vpi~aY~vSgeY~~~r~Aa~~~~~n~~eal~E~~~~ 275 (300)
++.|.|+| |.- ++ ++.+++++.++.. ..++.+=++++ +.+|++..+ ..
T Consensus 156 ~~gGvD~I--kdde~~ge~~~~~~eER~~~v~~av~~a~~~TG~~~~y~~nit~--------------~~~e~i~~a-~~ 218 (367)
T cd08205 156 ALGGIDLI--KDDELLADQPYAPFEERVRACMEAVRRANEETGRKTLYAPNITG--------------DPDELRRRA-DR 218 (367)
T ss_pred HhcCCCee--eccccccCcccCCHHHHHHHHHHHHHHHHHhhCCcceEEEEcCC--------------CHHHHHHHH-HH
Confidence 68999998 542 22 6777777765532 55665555543 233444444 44
Q ss_pred HHHcCCCEEEecchHHH
Q psy15126 276 LRRGGADVIISYYTPRV 292 (300)
Q Consensus 276 ~~r~GAD~Ii~y~A~~~ 292 (300)
.+++|||.+|+-|-...
T Consensus 219 a~~~Gad~vmv~~~~~g 235 (367)
T cd08205 219 AVEAGANALLINPNLVG 235 (367)
T ss_pred HHHcCCCEEEEeccccc
Confidence 45799999999875443
No 117
>cd00423 Pterin_binding Pterin binding enzymes. This family includes dihydropteroate synthase (DHPS) and cobalamin-dependent methyltransferases such as methyltetrahydrofolate, corrinoid iron-sulfur protein methyltransferase (MeTr) and methionine synthase (MetH). DHPS, a functional homodimer, catalyzes the condensation of p-aminobenzoic acid (pABA) in the de novo biosynthesis of folate, which is an essential cofactor in both nucleic acid and protein biosynthesis. Prokaryotes (and some lower eukaryotes) must synthesize folate de novo, while higher eukaryotes are able to utilize dietary folate and therefore lack DHPS. Sulfonamide drugs, which are substrate analogs of pABA, target DHPS. Cobalamin-dependent methyltransferases catalyze the transfer of a methyl group via a methyl- cob(III)amide intermediate. These include MeTr, a functional heterodimer, and the folate binding domain of MetH.
Probab=74.74 E-value=32 Score=31.78 Aligned_cols=71 Identities=17% Similarity=0.212 Sum_probs=43.5
Q ss_pred hhcCCceeeccCc-c-------------h-HHHHHHHHHhhCCCCCEEeEecccccHHHHHHHhCC--CC------CHHH
Q psy15126 211 VSQGADFLMVKPA-L-------------P-YLDIISEVKSRHPAYPLFVYQVSGEYAMLAFAAQAG--AL------DLKR 267 (300)
Q Consensus 211 a~~GADivmVkPs-m-------------m-~ld~Ir~~~d~~~~vpi~aY~vSgeY~~~r~Aa~~~--~~------n~~e 267 (300)
+++|||||=|... . . ...+|+.+++.+ ++||..= |-...-+++|.+.| ++ +.++
T Consensus 34 ~~~GAdiIDvG~~st~p~~~~~~~~~E~~rl~~~v~~l~~~~-~~piSID--T~~~~v~~aaL~~g~~iINdis~~~~~~ 110 (258)
T cd00423 34 VEEGADIIDIGGESTRPGAEPVSVEEELERVIPVLRALAGEP-DVPISVD--TFNAEVAEAALKAGADIINDVSGGRGDP 110 (258)
T ss_pred HHCCCCEEEECCCcCCCCCCcCCHHHHHHHHHHHHHHHHhcC-CCeEEEe--CCcHHHHHHHHHhCCCEEEeCCCCCCCh
Confidence 8999999988753 2 1 455666666554 6776322 56777778787653 11 2224
Q ss_pred HHHHHHHHHHHcCCCEEEec
Q psy15126 268 ALMETLTCLRRGGADVIISY 287 (300)
Q Consensus 268 al~E~~~~~~r~GAD~Ii~y 287 (300)
.+.+... +.|+-+|+..
T Consensus 111 ~~~~l~~---~~~~~vV~m~ 127 (258)
T cd00423 111 EMAPLAA---EYGAPVVLMH 127 (258)
T ss_pred HHHHHHH---HcCCCEEEEC
Confidence 4455444 4588888765
No 118
>TIGR03249 KdgD 5-dehydro-4-deoxyglucarate dehydratase. 5-dehydro-4-deoxyglucarate dehydratase not only catalyzes the dehydration of the substrate (diol to ketone + water), but causes the decarboxylation of the intermediate product to yield 2-oxoglutarate semialdehyde (2,5-dioxopentanoate). The gene for the enzyme is usually observed in the vicinity of transporters and dehydratases handling D-galactarate and D-gluconate as well as aldehyde dehydrogenases which convert the product to alpha-ketoglutarate.
Probab=74.46 E-value=35 Score=32.01 Aligned_cols=38 Identities=24% Similarity=0.292 Sum_probs=27.2
Q ss_pred hhcCCceeeccCc-ch------HHHHHHHHHhhCCCCCEEeEeccc
Q psy15126 211 VSQGADFLMVKPA-LP------YLDIISEVKSRHPAYPLFVYQVSG 249 (300)
Q Consensus 211 a~~GADivmVkPs-mm------~ld~Ir~~~d~~~~vpi~aY~vSg 249 (300)
.+.|||.+||-|- .. .++..+++.+.. ++||+-|+-+|
T Consensus 96 ~~~Gadav~~~pP~y~~~s~~~i~~~f~~v~~a~-~~pvilYn~~g 140 (296)
T TIGR03249 96 EKAGADGYLLLPPYLINGEQEGLYAHVEAVCEST-DLGVIVYQRDN 140 (296)
T ss_pred HHhCCCEEEECCCCCCCCCHHHHHHHHHHHHhcc-CCCEEEEeCCC
Confidence 5789999988775 21 356666666664 79999998543
No 119
>PF01081 Aldolase: KDPG and KHG aldolase; InterPro: IPR000887 4-Hydroxy-2-oxoglutarate aldolase (4.1.3.16 from EC) (KHG-aldolase) catalyzes the interconversion of 4-hydroxy-2-oxoglutarate into pyruvate and glyoxylate. Phospho-2-dehydro-3-deoxygluconate aldolase (4.1.2.14 from EC) (KDPG-aldolase) catalyzes the interconversion of 6-phospho-2-dehydro-3-deoxy-D-gluconate into pyruvate and glyceraldehyde 3-phosphate. These two enzymes are structurally and functionally related []. They are both homotrimeric proteins of approximately 220 amino-acid residues. They are class I aldolases whose catalytic mechanism involves the formation of a Schiff-base intermediate between the substrate and the epsilon-amino group of a lysine residue. In both enzymes, an arginine is required for catalytic activity.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VCR_A 1FQ0_A 1EUN_A 1EUA_B 1FWR_A 2C0A_B 1WBH_A 1WAU_A 2YW3_B 2YW4_A ....
Probab=73.40 E-value=25 Score=32.12 Aligned_cols=62 Identities=24% Similarity=0.435 Sum_probs=41.8
Q ss_pred hhcCCceeeccCcchHHHHHHHHHhhCCCCCEEeEecccccHHHHHHHhCCCCCHHHHHHHHHHHHHHcCCCEEEecch-
Q psy15126 211 VSQGADFLMVKPALPYLDIISEVKSRHPAYPLFVYQVSGEYAMLAFAAQAGALDLKRALMETLTCLRRGGADVIISYYT- 289 (300)
Q Consensus 211 a~~GADivmVkPsmm~ld~Ir~~~d~~~~vpi~aY~vSgeY~~~r~Aa~~~~~n~~eal~E~~~~~~r~GAD~Ii~y~A- 289 (300)
+++||+++ |.|. .--++++..++. ++|.+.=- ... -|....+ +.||++|=.+||
T Consensus 77 ~~aGA~Fi-vSP~-~~~~v~~~~~~~--~i~~iPG~----------------~Tp----tEi~~A~-~~G~~~vK~FPA~ 131 (196)
T PF01081_consen 77 IAAGAQFI-VSPG-FDPEVIEYAREY--GIPYIPGV----------------MTP----TEIMQAL-EAGADIVKLFPAG 131 (196)
T ss_dssp HHHT-SEE-EESS---HHHHHHHHHH--TSEEEEEE----------------SSH----HHHHHHH-HTT-SEEEETTTT
T ss_pred HHcCCCEE-ECCC-CCHHHHHHHHHc--CCcccCCc----------------CCH----HHHHHHH-HCCCCEEEEecch
Confidence 78999998 8997 345667777765 67777642 233 6777778 799999999996
Q ss_pred ----HHHHHHHh
Q psy15126 290 ----PRVLEWLR 297 (300)
Q Consensus 290 ----~~~ld~l~ 297 (300)
+.|++-|+
T Consensus 132 ~~GG~~~ik~l~ 143 (196)
T PF01081_consen 132 ALGGPSYIKALR 143 (196)
T ss_dssp TTTHHHHHHHHH
T ss_pred hcCcHHHHHHHh
Confidence 45666554
No 120
>cd00739 DHPS DHPS subgroup of Pterin binding enzymes. DHPS (dihydropteroate synthase), a functional homodimer, catalyzes the condensation of p-aminobenzoic acid (pABA) in the de novo biosynthesis of folate, which is an essential cofactor in both nucleic acid and protein biosynthesis. Prokaryotes (and some lower eukaryotes) must synthesize folate de novo, while higher eukaryotes are able to utilize dietary folate and therefore lack DHPS. Sulfonamide drugs, which are substrate analogs of pABA, target DHPS.
Probab=73.29 E-value=49 Score=31.00 Aligned_cols=72 Identities=17% Similarity=0.271 Sum_probs=44.8
Q ss_pred hhcCCceeecc-----Ccch----------HHHHHHHHHhhCCCCCEEeEecccccHHHHHHHhCC--CCC------HHH
Q psy15126 211 VSQGADFLMVK-----PALP----------YLDIISEVKSRHPAYPLFVYQVSGEYAMLAFAAQAG--ALD------LKR 267 (300)
Q Consensus 211 a~~GADivmVk-----Psmm----------~ld~Ir~~~d~~~~vpi~aY~vSgeY~~~r~Aa~~~--~~n------~~e 267 (300)
+++|||+|=|. |... .+.+|+.+++.+ ++||..= |....-+++|.+.| ++| .++
T Consensus 34 ~~~GAdiIDIG~~st~p~~~~i~~~~E~~rl~~~v~~i~~~~-~~plSID--T~~~~v~e~al~~G~~iINdisg~~~~~ 110 (257)
T cd00739 34 IAEGADIIDIGGESTRPGADPVSVEEELERVIPVLEALRGEL-DVLISVD--TFRAEVARAALEAGADIINDVSGGSDDP 110 (257)
T ss_pred HHCCCCEEEECCCcCCCCCCCCCHHHHHHHHHHHHHHHHhcC-CCcEEEe--CCCHHHHHHHHHhCCCEEEeCCCCCCCh
Confidence 89999999884 4321 234566666655 7887332 66778888888754 222 123
Q ss_pred HHHHHHHHHHHcCCCEEEecc
Q psy15126 268 ALMETLTCLRRGGADVIISYY 288 (300)
Q Consensus 268 al~E~~~~~~r~GAD~Ii~y~ 288 (300)
.+.+. +++-|+-+|+..-
T Consensus 111 ~~~~l---~~~~~~~vV~m~~ 128 (257)
T cd00739 111 AMLEV---AAEYGAPLVLMHM 128 (257)
T ss_pred HHHHH---HHHcCCCEEEECC
Confidence 44443 3345899888753
No 121
>CHL00200 trpA tryptophan synthase alpha subunit; Provisional
Probab=72.65 E-value=13 Score=35.17 Aligned_cols=57 Identities=25% Similarity=0.343 Sum_probs=28.6
Q ss_pred HHHHHHHHhhCCCCC--EEeEec-ccccHH---HHHHHhCC-------CCCHHHHHHHHHHHHHHcCCCEEE
Q psy15126 227 LDIISEVKSRHPAYP--LFVYQV-SGEYAM---LAFAAQAG-------ALDLKRALMETLTCLRRGGADVII 285 (300)
Q Consensus 227 ld~Ir~~~d~~~~vp--i~aY~v-SgeY~~---~r~Aa~~~-------~~n~~eal~E~~~~~~r~GAD~Ii 285 (300)
++.+++++++ +++| +|+|-- --.||. ++.+++.| -+..+| ..|....+++.|-+.|.
T Consensus 80 ~~~~~~~r~~-~~~p~vlm~Y~N~i~~~G~e~F~~~~~~aGvdgviipDLP~ee-~~~~~~~~~~~gi~~I~ 149 (263)
T CHL00200 80 LSILSEVNGE-IKAPIVIFTYYNPVLHYGINKFIKKISQAGVKGLIIPDLPYEE-SDYLISVCNLYNIELIL 149 (263)
T ss_pred HHHHHHHhcC-CCCCEEEEecccHHHHhCHHHHHHHHHHcCCeEEEecCCCHHH-HHHHHHHHHHcCCCEEE
Confidence 5666666654 4677 566631 112332 33334443 112222 35666666677777664
No 122
>PRK09485 mmuM homocysteine methyltransferase; Provisional
Probab=72.44 E-value=86 Score=29.83 Aligned_cols=83 Identities=14% Similarity=0.100 Sum_probs=48.5
Q ss_pred ChHHHHHHHHHHhCC-----CcEEEeeecCCCCCCCCccee-eCCCCceecHHhHHHHHHHHHHHHHcCCCccccCCCCc
Q psy15126 16 NPLFQVIPMIRKQFP-----SLTIACDVCLCGYTSHGHCAI-FNEDGSIHYEKTLKRLADISKAFSDAGAHIVAPSDMMD 89 (300)
Q Consensus 16 ~~~~~~i~~ik~~~p-----~l~i~~Dvclc~yt~hGHcgi-~~~~g~i~nd~Tl~~l~~~A~~~A~aGad~vAPSdmMD 89 (300)
.+..++++..|+... +..|+.++ -||...=+.|- ...+..+..+.-.+...+|+..+.++|+|++.--.+.+
T Consensus 87 ~l~~~av~lA~~a~~~~~~~~~~VaGsi--GP~g~~l~~~~~y~g~~~~~~~~~~~~~~~q~~~l~~~gvD~i~~ET~~~ 164 (304)
T PRK09485 87 ELIRRSVELAKEARDEFWAEKPLVAGSV--GPYGAYLADGSEYRGDYGLSEEELQDFHRPRIEALAEAGADLLACETIPN 164 (304)
T ss_pred HHHHHHHHHHHHHHHhhccCCceEEEec--CCcccccCCCCCCCCCCCCCHHHHHHHHHHHHHHHhhCCCCEEEEeccCC
Confidence 355667777676653 37788875 34432211110 00011256666677777889999999999999966655
Q ss_pred ch-HHHHHHHHh
Q psy15126 90 NR-IHAIKQSLF 100 (300)
Q Consensus 90 gr-v~air~aLd 100 (300)
-. ...+.+++.
T Consensus 165 ~~E~~~~~~~~~ 176 (304)
T PRK09485 165 LDEAEALVELLK 176 (304)
T ss_pred HHHHHHHHHHHH
Confidence 32 233444444
No 123
>PRK07807 inosine 5-monophosphate dehydrogenase; Validated
Probab=71.93 E-value=7.5 Score=39.75 Aligned_cols=42 Identities=24% Similarity=0.446 Sum_probs=33.0
Q ss_pred CChHHHHHHHHHHhCCCcEEEe-eecCCCCCCCCcceeeCCCCceecHHhHHHHHHHHHHHHHcCCCccc
Q psy15126 15 DNPLFQVIPMIRKQFPSLTIAC-DVCLCGYTSHGHCAIFNEDGSIHYEKTLKRLADISKAFSDAGAHIVA 83 (300)
Q Consensus 15 ~~~~~~~i~~ik~~~p~l~i~~-Dvclc~yt~hGHcgi~~~~g~i~nd~Tl~~l~~~A~~~A~aGad~vA 83 (300)
.-.+.+.|+.||++||++.||+ ||.- .+.|..+.++|||.|-
T Consensus 252 ~~~~~~~i~~ik~~~p~~~v~agnv~t---------------------------~~~a~~l~~aGad~v~ 294 (479)
T PRK07807 252 QEKMLEALRAVRALDPGVPIVAGNVVT---------------------------AEGTRDLVEAGADIVK 294 (479)
T ss_pred cHHHHHHHHHHHHHCCCCeEEeeccCC---------------------------HHHHHHHHHcCCCEEE
Confidence 4566778888889999888887 6542 3578888899999987
No 124
>PRK01130 N-acetylmannosamine-6-phosphate 2-epimerase; Provisional
Probab=71.92 E-value=16 Score=32.38 Aligned_cols=88 Identities=14% Similarity=0.069 Sum_probs=50.1
Q ss_pred HhHHHHHHHHHh-hhcccccCCCCCccccchhhhcCCceeeccC----------cchHHHHHHHHHhhCCCCCEEeEecc
Q psy15126 180 KTLKRLADISKA-FSDAVYVPNHNTDRFQARDVSQGADFLMVKP----------ALPYLDIISEVKSRHPAYPLFVYQVS 248 (300)
Q Consensus 180 ~tl~~l~~~a~~-~a~~~~~~~~n~~~~~~~Da~~GADivmVkP----------smm~ld~Ir~~~d~~~~vpi~aY~vS 248 (300)
++++.+.+.+.. .---+.++.+|.++. .+-.++|+|+|.+.. .-..++.++++++.. ++|+++= +
T Consensus 105 ~~~~~~i~~~~~~~~i~vi~~v~t~ee~-~~a~~~G~d~i~~~~~g~t~~~~~~~~~~~~~i~~i~~~~-~iPvia~--G 180 (221)
T PRK01130 105 ETLAELVKRIKEYPGQLLMADCSTLEEG-LAAQKLGFDFIGTTLSGYTEETKKPEEPDFALLKELLKAV-GCPVIAE--G 180 (221)
T ss_pred CCHHHHHHHHHhCCCCeEEEeCCCHHHH-HHHHHcCCCEEEcCCceeecCCCCCCCcCHHHHHHHHHhC-CCCEEEE--C
Confidence 344455555444 222233455555554 445679999996632 122478888888876 7998863 2
Q ss_pred cccHHHHHHHhCCCCCHHHHHHHHHHHHHHcCCCEEEecc
Q psy15126 249 GEYAMLAFAAQAGALDLKRALMETLTCLRRGGADVIISYY 288 (300)
Q Consensus 249 geY~~~r~Aa~~~~~n~~eal~E~~~~~~r~GAD~Ii~y~ 288 (300)
|- .+.+ .+..+.+.|||.+++--
T Consensus 181 GI------------~t~~-----~~~~~l~~GadgV~iGs 203 (221)
T PRK01130 181 RI------------NTPE-----QAKKALELGAHAVVVGG 203 (221)
T ss_pred CC------------CCHH-----HHHHHHHCCCCEEEEch
Confidence 22 1222 22233357999998754
No 125
>cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA). TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are both strongly stimulated by the formation of the complex. The alpha subunit catalyzes the cleavage of indole 3-glycerol phosphate (IGP) to indole and d-glyceraldehyde 3-phosphate (G3P). Indole is then channeled to the active site of the beta subunit, a PLP-dependent enzyme that catalyzes a replacement reaction to convert L-serine into L-tryptophan.
Probab=70.94 E-value=27 Score=32.03 Aligned_cols=62 Identities=24% Similarity=0.321 Sum_probs=36.0
Q ss_pred HHHHHHHHhhCCCCC--EEeE-eccccc---HHHHHHHhCCCC-------CHHHHHHHHHHHHHHcCCCEEE-ecchH
Q psy15126 227 LDIISEVKSRHPAYP--LFVY-QVSGEY---AMLAFAAQAGAL-------DLKRALMETLTCLRRGGADVII-SYYTP 290 (300)
Q Consensus 227 ld~Ir~~~d~~~~vp--i~aY-~vSgeY---~~~r~Aa~~~~~-------n~~eal~E~~~~~~r~GAD~Ii-~y~A~ 290 (300)
++.++++++.. ++| +|+| +.--.| ..++.+.+.|.- .. |-+.+.+..+++.|.+.++ +.|..
T Consensus 65 ~~~~~~vr~~~-~~pv~lm~y~n~~~~~G~~~fi~~~~~aG~~giiipDl~~-ee~~~~~~~~~~~g~~~i~~i~P~T 140 (242)
T cd04724 65 LELVKEIRKKN-TIPIVLMGYYNPILQYGLERFLRDAKEAGVDGLIIPDLPP-EEAEEFREAAKEYGLDLIFLVAPTT 140 (242)
T ss_pred HHHHHHHhhcC-CCCEEEEEecCHHHHhCHHHHHHHHHHCCCcEEEECCCCH-HHHHHHHHHHHHcCCcEEEEeCCCC
Confidence 66788887764 566 4557 431122 224445555531 33 4557777888888887765 55543
No 126
>TIGR01769 GGGP geranylgeranylglyceryl phosphate synthase. This model represents geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The active enzyme is reported to be a homopentamer in Methanobacterium thermoautotrophicum but is reported to be a homodimer in Thermoplasma acidophilum.
Probab=70.72 E-value=8.6 Score=35.29 Aligned_cols=50 Identities=24% Similarity=0.349 Sum_probs=34.7
Q ss_pred cccchHhHHHHHHHHHhhhcccccCCCCCccccchhhhcCCceeeccCcc-h----HHHHHHHHHhhCCCCCEEe
Q psy15126 175 SIHYEKTLKRLADISKAFSDAVYVPNHNTDRFQARDVSQGADFLMVKPAL-P----YLDIISEVKSRHPAYPLFV 244 (300)
Q Consensus 175 ~i~nd~tl~~l~~~a~~~a~~~~~~~~n~~~~~~~Da~~GADivmVkPsm-m----~ld~Ir~~~d~~~~vpi~a 244 (300)
.||-||. +.+.+++... .+.|+|.+||..|. . ..+.++.+|+.+ ++||+-
T Consensus 4 ~iDP~k~-e~~~~ia~~v------------------~~~gtDaI~VGGS~gvt~~~~~~~v~~ik~~~-~lPvil 58 (205)
T TIGR01769 4 LIDPEKS-DEIEKIAKNA------------------KDAGTDAIMVGGSLGIVESNLDQTVKKIKKIT-NLPVIL 58 (205)
T ss_pred ccCCCcH-HHHHHHHHHH------------------HhcCCCEEEEcCcCCCCHHHHHHHHHHHHhhc-CCCEEE
Confidence 3566666 6666665554 68999999999994 2 344667777654 788874
No 127
>cd00331 IGPS Indole-3-glycerol phosphate synthase (IGPS); an enzyme in the tryptophan biosynthetic pathway, catalyzing the ring closure reaction of 1-(o-carboxyphenylamino)-1-deoxyribulose-5-phosphate (CdRP) to indole-3-glycerol phosphate (IGP), accompanied by the release of carbon dioxide and water. IGPS is active as a separate monomer in most organisms, but is also found fused to other enzymes as part of a bifunctional or multifunctional enzyme involved in tryptophan biosynthesis.
Probab=70.49 E-value=31 Score=30.50 Aligned_cols=90 Identities=20% Similarity=0.262 Sum_probs=55.2
Q ss_pred HhHHHHHHHHHhhhcccccCCCCCccccchhhhcCCceeeccCcc-----hHHHHHHHHHhhC-CCCCEEeEecccccHH
Q psy15126 180 KTLKRLADISKAFSDAVYVPNHNTDRFQARDVSQGADFLMVKPAL-----PYLDIISEVKSRH-PAYPLFVYQVSGEYAM 253 (300)
Q Consensus 180 ~tl~~l~~~a~~~a~~~~~~~~n~~~~~~~Da~~GADivmVkPsm-----m~ld~Ir~~~d~~-~~vpi~aY~vSgeY~~ 253 (300)
++++.+.+.+..+.--+.+..||..+.. +=.+.|+|++.+-|.. +-++.++++++.+ +++|+.+= +
T Consensus 108 ~~~~~~~~~~~~~g~~~~v~v~~~~e~~-~~~~~g~~~i~~t~~~~~~~~~~~~~~~~l~~~~~~~~pvia~--g----- 179 (217)
T cd00331 108 EQLKELYELARELGMEVLVEVHDEEELE-RALALGAKIIGINNRDLKTFEVDLNTTERLAPLIPKDVILVSE--S----- 179 (217)
T ss_pred HHHHHHHHHHHHcCCeEEEEECCHHHHH-HHHHcCCCEEEEeCCCccccCcCHHHHHHHHHhCCCCCEEEEE--c-----
Confidence 6777777777665433334456655533 2356899999888642 1467888888775 36777643 1
Q ss_pred HHHHHhCCCCCHHHHHHHHHHHHHHcCCCEEEecch
Q psy15126 254 LAFAAQAGALDLKRALMETLTCLRRGGADVIISYYT 289 (300)
Q Consensus 254 ~r~Aa~~~~~n~~eal~E~~~~~~r~GAD~Ii~y~A 289 (300)
|..+. |-+..+++.|||.+++--+
T Consensus 180 -------GI~s~-----edi~~~~~~Ga~gvivGsa 203 (217)
T cd00331 180 -------GISTP-----EDVKRLAEAGADAVLIGES 203 (217)
T ss_pred -------CCCCH-----HHHHHHHHcCCCEEEECHH
Confidence 22222 2233445679999987554
No 128
>PLN02424 ketopantoate hydroxymethyltransferase
Probab=70.39 E-value=9.1 Score=37.96 Aligned_cols=70 Identities=21% Similarity=0.220 Sum_probs=42.1
Q ss_pred hhcCCceeeccCcc-h---------------HHHHHHHHHh---h-C--CCCCEEeEecccccHHHHHHHhCCCCCHHHH
Q psy15126 211 VSQGADFLMVKPAL-P---------------YLDIISEVKS---R-H--PAYPLFVYQVSGEYAMLAFAAQAGALDLKRA 268 (300)
Q Consensus 211 a~~GADivmVkPsm-m---------------~ld~Ir~~~d---~-~--~~vpi~aY~vSgeY~~~r~Aa~~~~~n~~ea 268 (300)
-++|.|+|.|.-|+ | ++-..+.+.. . + .+.|.++|+. +.+++
T Consensus 52 d~aGvD~ILVGDSlgmv~lG~~~T~~Vtld~mi~H~~aV~Rga~~a~vVaDmPfgSY~~----------------s~e~a 115 (332)
T PLN02424 52 DSAGIDVCLVGDSAAMVVHGHDTTLPITLDEMLVHCRAVARGANRPLLVGDLPFGSYES----------------STDQA 115 (332)
T ss_pred HHcCCCEEEECCcHHHHhcCCCCCCCcCHHHHHHHHHHHhccCCCCEEEeCCCCCCCCC----------------CHHHH
Confidence 36899999999884 2 2333444333 3 2 3677788876 45566
Q ss_pred HHHHHHHHHHcCCCEEEecch-HHHHHHH
Q psy15126 269 LMETLTCLRRGGADVIISYYT-PRVLEWL 296 (300)
Q Consensus 269 l~E~~~~~~r~GAD~Ii~y~A-~~~ld~l 296 (300)
++-+.+=++++||+.|=.--+ ...++.+
T Consensus 116 v~nA~rl~~eaGa~aVKlEGg~~~~~~~I 144 (332)
T PLN02424 116 VESAVRMLKEGGMDAVKLEGGSPSRVTAA 144 (332)
T ss_pred HHHHHHHHHHhCCcEEEECCCcHHHHHHH
Confidence 665555555667776665555 3444444
No 129
>PRK07107 inosine 5-monophosphate dehydrogenase; Validated
Probab=69.96 E-value=14 Score=37.95 Aligned_cols=56 Identities=21% Similarity=0.246 Sum_probs=39.8
Q ss_pred hhcCCceeeccCc--c--hHHHHHHHHHhhCCC-CCEEeEecccccHHHHHHHhCCCCCHHHHHHHHHHHHHHcCCCEEE
Q psy15126 211 VSQGADFLMVKPA--L--PYLDIISEVKSRHPA-YPLFVYQVSGEYAMLAFAAQAGALDLKRALMETLTCLRRGGADVII 285 (300)
Q Consensus 211 a~~GADivmVkPs--m--m~ld~Ir~~~d~~~~-vpi~aY~vSgeY~~~r~Aa~~~~~n~~eal~E~~~~~~r~GAD~Ii 285 (300)
+++|+|+|.|--+ - ..++.|+++++.|+. ++|.+=+| .. .|..+++.++|||.|.
T Consensus 251 v~aGvd~i~vd~a~g~~~~~~~~i~~ir~~~~~~~~V~aGnV---------------~t-----~e~a~~li~aGAd~I~ 310 (502)
T PRK07107 251 VEAGADVLCIDSSEGYSEWQKRTLDWIREKYGDSVKVGAGNV---------------VD-----REGFRYLAEAGADFVK 310 (502)
T ss_pred HHhCCCeEeecCcccccHHHHHHHHHHHHhCCCCceEEeccc---------------cC-----HHHHHHHHHcCCCEEE
Confidence 7899999976422 1 259999999999874 88888655 22 2333445578999997
Q ss_pred e
Q psy15126 286 S 286 (300)
Q Consensus 286 ~ 286 (300)
+
T Consensus 311 v 311 (502)
T PRK07107 311 V 311 (502)
T ss_pred E
Confidence 6
No 130
>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed
Probab=69.54 E-value=16 Score=36.99 Aligned_cols=56 Identities=30% Similarity=0.414 Sum_probs=40.4
Q ss_pred hhcCCceeeccCc----chHHHHHHHHHhhCCCCCEEeEecccccHHHHHHHhCCCCCHHHHHHHHHHHHHHcCCCEEEe
Q psy15126 211 VSQGADFLMVKPA----LPYLDIISEVKSRHPAYPLFVYQVSGEYAMLAFAAQAGALDLKRALMETLTCLRRGGADVIIS 286 (300)
Q Consensus 211 a~~GADivmVkPs----mm~ld~Ir~~~d~~~~vpi~aY~vSgeY~~~r~Aa~~~~~n~~eal~E~~~~~~r~GAD~Ii~ 286 (300)
+++|+|+|.|--+ .-.++.|+.+++++|++||++=.+ .+. |..+.+.++|||+|.+
T Consensus 237 ~~agvdvivvD~a~g~~~~vl~~i~~i~~~~p~~~vi~g~v---------------~t~-----e~a~~l~~aGad~i~v 296 (486)
T PRK05567 237 VEAGVDVLVVDTAHGHSEGVLDRVREIKAKYPDVQIIAGNV---------------ATA-----EAARALIEAGADAVKV 296 (486)
T ss_pred HHhCCCEEEEECCCCcchhHHHHHHHHHhhCCCCCEEEecc---------------CCH-----HHHHHHHHcCCCEEEE
Confidence 6889999977543 227888999988898999888433 333 3334555789999976
No 131
>PLN02591 tryptophan synthase
Probab=69.47 E-value=21 Score=33.65 Aligned_cols=62 Identities=21% Similarity=0.315 Sum_probs=30.3
Q ss_pred HHHHHHHHhhCCCCC--EEeEec-ccccHH---HHHHHhCCC-------CCHHHHHHHHHHHHHHcCCCEEEec-chH
Q psy15126 227 LDIISEVKSRHPAYP--LFVYQV-SGEYAM---LAFAAQAGA-------LDLKRALMETLTCLRRGGADVIISY-YTP 290 (300)
Q Consensus 227 ld~Ir~~~d~~~~vp--i~aY~v-SgeY~~---~r~Aa~~~~-------~n~~eal~E~~~~~~r~GAD~Ii~y-~A~ 290 (300)
++.+++++++ +++| +|+|-- --.||. ++.+.++|. +.. |-..|....+++.|-+.|..- |+.
T Consensus 67 ~~~~~~~r~~-~~~p~ilm~Y~N~i~~~G~~~F~~~~~~aGv~GviipDLP~-ee~~~~~~~~~~~gl~~I~lv~Ptt 142 (250)
T PLN02591 67 ISMLKEVAPQ-LSCPIVLFTYYNPILKRGIDKFMATIKEAGVHGLVVPDLPL-EETEALRAEAAKNGIELVLLTTPTT 142 (250)
T ss_pred HHHHHHHhcC-CCCCEEEEecccHHHHhHHHHHHHHHHHcCCCEEEeCCCCH-HHHHHHHHHHHHcCCeEEEEeCCCC
Confidence 5566666644 4677 556522 112333 223334442 223 233455556666787776544 544
No 132
>COG0269 SgbH 3-hexulose-6-phosphate synthase and related proteins [Carbohydrate transport and metabolism]
Probab=69.04 E-value=6.8 Score=36.78 Aligned_cols=57 Identities=25% Similarity=0.355 Sum_probs=42.5
Q ss_pred HHHHHHHHhCCCcEEEeeecCCCCCCCCcceeeCCCCceecHHhHHHHHHHHHHHHHcCCCccccCCCCcchHHHHHHHH
Q psy15126 20 QVIPMIRKQFPSLTIACDVCLCGYTSHGHCAIFNEDGSIHYEKTLKRLADISKAFSDAGAHIVAPSDMMDNRIHAIKQSL 99 (300)
Q Consensus 20 ~~i~~ik~~~p~l~i~~Dvclc~yt~hGHcgi~~~~g~i~nd~Tl~~l~~~A~~~A~aGad~vAPSdmMDgrv~air~aL 99 (300)
++|+.||+.||+-.|.+|.-.+ | .|.+ .+..++++|||++.-+...+ +..|.+++
T Consensus 45 ~aV~~lr~~~pd~~IvAD~Kt~-----------D-~G~~-----------e~~ma~~aGAd~~tV~g~A~--~~TI~~~i 99 (217)
T COG0269 45 RAVRALRELFPDKIIVADLKTA-----------D-AGAI-----------EARMAFEAGADWVTVLGAAD--DATIKKAI 99 (217)
T ss_pred HHHHHHHHHCCCCeEEeeeeec-----------c-hhHH-----------HHHHHHHcCCCEEEEEecCC--HHHHHHHH
Confidence 8999999999999999998642 3 3533 24456899999999987776 44555555
Q ss_pred hh
Q psy15126 100 FT 101 (300)
Q Consensus 100 d~ 101 (300)
..
T Consensus 100 ~~ 101 (217)
T COG0269 100 KV 101 (217)
T ss_pred HH
Confidence 44
No 133
>PRK00043 thiE thiamine-phosphate pyrophosphorylase; Reviewed
Probab=69.03 E-value=23 Score=30.57 Aligned_cols=56 Identities=23% Similarity=0.398 Sum_probs=37.9
Q ss_pred hhcCCceeeccCcch-----------HHHHHHHHHhhCCCCCEEeEecccccHHHHHHHhCCCCCHHHHHHHHHHHHHHc
Q psy15126 211 VSQGADFLMVKPALP-----------YLDIISEVKSRHPAYPLFVYQVSGEYAMLAFAAQAGALDLKRALMETLTCLRRG 279 (300)
Q Consensus 211 a~~GADivmVkPsmm-----------~ld~Ir~~~d~~~~vpi~aY~vSgeY~~~r~Aa~~~~~n~~eal~E~~~~~~r~ 279 (300)
.+.|||+|.+.|-.+ -++.++++++.++++||++=. -+|. |.+..+.+.
T Consensus 121 ~~~gaD~v~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~v~a~G---------------GI~~-----~~i~~~~~~ 180 (212)
T PRK00043 121 LAAGADYVGVGPIFPTPTKKDAKAPQGLEGLREIRAAVGDIPIVAIG---------------GITP-----ENAPEVLEA 180 (212)
T ss_pred hHcCCCEEEECCccCCCCCCCCCCCCCHHHHHHHHHhcCCCCEEEEC---------------CcCH-----HHHHHHHHc
Confidence 478999998654321 178899998887569988763 2343 334455567
Q ss_pred CCCEEEe
Q psy15126 280 GADVIIS 286 (300)
Q Consensus 280 GAD~Ii~ 286 (300)
|||.|.+
T Consensus 181 Ga~gv~~ 187 (212)
T PRK00043 181 GADGVAV 187 (212)
T ss_pred CCCEEEE
Confidence 8888876
No 134
>PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=68.84 E-value=9.9 Score=34.80 Aligned_cols=60 Identities=18% Similarity=0.215 Sum_probs=44.4
Q ss_pred HHHHHHhhhcccccCCCCCccccchhhhcCCceeeccCcc-hHHHHHHHHHhhCCCCCEEeE
Q psy15126 185 LADISKAFSDAVYVPNHNTDRFQARDVSQGADFLMVKPAL-PYLDIISEVKSRHPAYPLFVY 245 (300)
Q Consensus 185 l~~~a~~~a~~~~~~~~n~~~~~~~Da~~GADivmVkPsm-m~ld~Ir~~~d~~~~vpi~aY 245 (300)
+.+.+.. .+..|+|--.|..=...=.++|||+|-+=|+. .=++.|+.++..||++|+++=
T Consensus 101 v~~~~~~-~~i~~iPG~~T~~E~~~A~~~Gad~vklFPa~~~G~~~ik~l~~~~p~ip~~at 161 (213)
T PRK06552 101 TAKICNL-YQIPYLPGCMTVTEIVTALEAGSEIVKLFPGSTLGPSFIKAIKGPLPQVNVMVT 161 (213)
T ss_pred HHHHHHH-cCCCEECCcCCHHHHHHHHHcCCCEEEECCcccCCHHHHHHHhhhCCCCEEEEE
Confidence 3344443 47789998777766566678999999998873 347778888888989999864
No 135
>PLN02417 dihydrodipicolinate synthase
Probab=68.82 E-value=62 Score=30.23 Aligned_cols=34 Identities=15% Similarity=0.223 Sum_probs=23.0
Q ss_pred hhcCCceeeccCcch-------HHHHHHHHHhhCCCCCEEeEec
Q psy15126 211 VSQGADFLMVKPALP-------YLDIISEVKSRHPAYPLFVYQV 247 (300)
Q Consensus 211 a~~GADivmVkPsmm-------~ld~Ir~~~d~~~~vpi~aY~v 247 (300)
.+.|||.|||-|-.. -++..+++.+. . ||+-|+.
T Consensus 93 ~~~Gadav~~~~P~y~~~~~~~i~~~f~~va~~--~-pi~lYn~ 133 (280)
T PLN02417 93 FAVGMHAALHINPYYGKTSQEGLIKHFETVLDM--G-PTIIYNV 133 (280)
T ss_pred HHcCCCEEEEcCCccCCCCHHHHHHHHHHHHhh--C-CEEEEEC
Confidence 579999999887532 23444444443 3 9999987
No 136
>cd06556 ICL_KPHMT Members of the ICL/PEPM_KPHMT enzyme superfamily catalyze the formation and cleavage of either P-C or C-C bonds. Typical members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), 2-methylisocitrate lyase (MICL), and ketopantoate hydroxymethyltransferase (KPHMT).
Probab=68.77 E-value=34 Score=31.98 Aligned_cols=72 Identities=14% Similarity=0.128 Sum_probs=43.9
Q ss_pred hhcCCceeeccCcchHHHHHHHHHhhCCCCCEEeEecccccHHHHHH-----HhCCCCC-HHHHHHHHHHHHHHcCCCEE
Q psy15126 211 VSQGADFLMVKPALPYLDIISEVKSRHPAYPLFVYQVSGEYAMLAFA-----AQAGALD-LKRALMETLTCLRRGGADVI 284 (300)
Q Consensus 211 a~~GADivmVkPsmm~ld~Ir~~~d~~~~vpi~aY~vSgeY~~~r~A-----a~~~~~n-~~eal~E~~~~~~r~GAD~I 284 (300)
+++||+.|-+.-+..+++.|+.+++. .+||++.. +-+.-.... .+--..+ .+++ .|-.+.+.++|||+|
T Consensus 99 ~~aGa~gv~iED~~~~~~~i~ai~~a--~i~ViaRt--d~~pq~~~~~gg~~~~~~~~~~~~~a-i~Ra~ay~~AGAd~i 173 (240)
T cd06556 99 MRAGAAGVKIEGGEWHIETLQMLTAA--AVPVIAHT--GLTPQSVNTSGGDEGQYRGDEAGEQL-IADALAYAPAGADLI 173 (240)
T ss_pred HHcCCcEEEEcCcHHHHHHHHHHHHc--CCeEEEEe--CCchhhhhccCCceeeccCHHHHHHH-HHHHHHHHHcCCCEE
Confidence 78999999777776677888888876 37898872 222110000 0000112 2444 444556668999999
Q ss_pred Eec
Q psy15126 285 ISY 287 (300)
Q Consensus 285 i~y 287 (300)
.+-
T Consensus 174 ~~e 176 (240)
T cd06556 174 VME 176 (240)
T ss_pred EEc
Confidence 874
No 137
>PRK00311 panB 3-methyl-2-oxobutanoate hydroxymethyltransferase; Reviewed
Probab=68.73 E-value=23 Score=33.71 Aligned_cols=72 Identities=15% Similarity=0.165 Sum_probs=43.7
Q ss_pred hh-cCCceeeccCcchHHHHHHHHHhhCCCCCEEeEec-----ccccHHHHHHHhCCCC-CHHHHHHHHHHHHHHcCCCE
Q psy15126 211 VS-QGADFLMVKPALPYLDIISEVKSRHPAYPLFVYQV-----SGEYAMLAFAAQAGAL-DLKRALMETLTCLRRGGADV 283 (300)
Q Consensus 211 a~-~GADivmVkPsmm~ld~Ir~~~d~~~~vpi~aY~v-----SgeY~~~r~Aa~~~~~-n~~eal~E~~~~~~r~GAD~ 283 (300)
++ +||+.|-+.=+.-..+.||.+.+. .+|+|++=- ....+-||- .|-- +..+.+.|-.+.+.++|||+
T Consensus 103 ~~~aGa~aVkiEdg~~~~~~I~al~~a--gIpV~gHiGL~pq~~~~~gg~~i---~grt~~~a~~~i~ra~a~~eAGA~~ 177 (264)
T PRK00311 103 MKEAGAHAVKLEGGEEVAETIKRLVER--GIPVMGHLGLTPQSVNVLGGYKV---QGRDEEAAEKLLEDAKALEEAGAFA 177 (264)
T ss_pred HHHhCCeEEEEcCcHHHHHHHHHHHHC--CCCEeeeecccceeecccCCeee---ecCCHHHHHHHHHHHHHHHHCCCCE
Confidence 45 899999665554577888888876 799985411 101111111 1111 11345666677777899999
Q ss_pred EEec
Q psy15126 284 IISY 287 (300)
Q Consensus 284 Ii~y 287 (300)
|..-
T Consensus 178 i~lE 181 (264)
T PRK00311 178 LVLE 181 (264)
T ss_pred EEEc
Confidence 9874
No 138
>cd02803 OYE_like_FMN_family Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=67.97 E-value=9.6 Score=35.54 Aligned_cols=69 Identities=20% Similarity=0.364 Sum_probs=49.8
Q ss_pred CcccccCCCCCChHHHHHHHHHHhC-CCcEEEeeecCCCCCCCCcceeeCCCCceecHHhHHHHHHHHHHHHHcCCCccc
Q psy15126 5 DETASFADTPDNPLFQVIPMIRKQF-PSLTIACDVCLCGYTSHGHCAIFNEDGSIHYEKTLKRLADISKAFSDAGAHIVA 83 (300)
Q Consensus 5 d~~~s~a~~~~~~~~~~i~~ik~~~-p~l~i~~Dvclc~yt~hGHcgi~~~~g~i~nd~Tl~~l~~~A~~~A~aGad~vA 83 (300)
|+.|..-.+.-..+.+.++.||+.+ |++.|..++....+... | .|.+...+.+..+.++|+|.|.
T Consensus 181 d~yGgs~enr~r~~~eii~avr~~~g~d~~i~vris~~~~~~~---------g-----~~~~e~~~la~~l~~~G~d~i~ 246 (327)
T cd02803 181 DEYGGSLENRARFLLEIVAAVREAVGPDFPVGVRLSADDFVPG---------G-----LTLEEAIEIAKALEEAGVDALH 246 (327)
T ss_pred cccCCCHHHHHHHHHHHHHHHHHHcCCCceEEEEechhccCCC---------C-----CCHHHHHHHHHHHHHcCCCEEE
Confidence 4444443333345678999999999 57999999987665322 2 4567778888889999999998
Q ss_pred cCCC
Q psy15126 84 PSDM 87 (300)
Q Consensus 84 PSdm 87 (300)
.+..
T Consensus 247 vs~g 250 (327)
T cd02803 247 VSGG 250 (327)
T ss_pred eCCC
Confidence 7653
No 139
>PRK05927 hypothetical protein; Provisional
Probab=67.48 E-value=9.7 Score=37.23 Aligned_cols=96 Identities=20% Similarity=0.328 Sum_probs=56.6
Q ss_pred CCccccccCCCccc-chHhHHHHHHHHHhhhcccccCCCCCccccchhhhcCCc-eeec---cCcch---HHHHHHHHHh
Q psy15126 164 HGHCAIFNEDGSIH-YEKTLKRLADISKAFSDAVYVPNHNTDRFQARDVSQGAD-FLMV---KPALP---YLDIISEVKS 235 (300)
Q Consensus 164 hGHcgi~~~~g~i~-nd~tl~~l~~~a~~~a~~~~~~~~n~~~~~~~Da~~GAD-ivmV---kPsmm---~ld~Ir~~~d 235 (300)
=+||++-...+... +.-|.+.+.+.+... .+.|+. ++++ .|... |.++||.+|+
T Consensus 59 C~fCaf~~~~~~~~~y~ls~eei~~~a~~~------------------~~~G~~~i~i~gG~~p~~~~e~~~~~i~~ik~ 120 (350)
T PRK05927 59 CTFCAFYRKPHSSDAYLLSFDEFRSLMQRY------------------VSAGVKTVLLQGGVHPQLGIDYLEELVRITVK 120 (350)
T ss_pred CccCCccCCCCCccccccCHHHHHHHHHHH------------------HHCCCCEEEEeCCCCCCCCHHHHHHHHHHHHH
Confidence 45677765433222 234555555555443 456773 3333 24422 7899999999
Q ss_pred hCCCCCEEeEecccccHHHHHHHhCCCCCHHHHHHHHHHHHHHcCCCEEE
Q psy15126 236 RHPAYPLFVYQVSGEYAMLAFAAQAGALDLKRALMETLTCLRRGGADVII 285 (300)
Q Consensus 236 ~~~~vpi~aY~vSgeY~~~r~Aa~~~~~n~~eal~E~~~~~~r~GAD~Ii 285 (300)
.+|++-+-+|+. .|..-+ +...|. -..|.+..++++|+|-++
T Consensus 121 ~~p~l~~~~~s~-~ei~~~--~~~~G~-----~~~e~l~~Lk~aGl~~l~ 162 (350)
T PRK05927 121 EFPSLHPHFFSA-VEIAHA--AQVSGI-----STEQALERLWDAGQRTIP 162 (350)
T ss_pred HCCCCcccCCCH-HHHHHH--HHhcCC-----CHHHHHHHHHHcCcccCC
Confidence 988887777754 222222 233455 346788889899998555
No 140
>COG0159 TrpA Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=67.42 E-value=29 Score=33.42 Aligned_cols=18 Identities=17% Similarity=0.623 Sum_probs=11.8
Q ss_pred HHHHHHHHhhCCCCCEEe
Q psy15126 227 LDIISEVKSRHPAYPLFV 244 (300)
Q Consensus 227 ld~Ir~~~d~~~~vpi~a 244 (300)
+..++++++.++++||.-
T Consensus 82 lel~~~~r~~~~~~Pivl 99 (265)
T COG0159 82 LELVEEIRAKGVKVPIVL 99 (265)
T ss_pred HHHHHHHHhcCCCCCEEE
Confidence 556666776677877643
No 141
>PRK07565 dihydroorotate dehydrogenase 2; Reviewed
Probab=66.96 E-value=32 Score=32.90 Aligned_cols=61 Identities=30% Similarity=0.322 Sum_probs=39.6
Q ss_pred hhcCCceeeccCcc--------------hHHHHHHHHHhhCCCCCEEeEecccccHHHHHHHhCCCCCHHHHHHHHHHHH
Q psy15126 211 VSQGADFLMVKPAL--------------PYLDIISEVKSRHPAYPLFVYQVSGEYAMLAFAAQAGALDLKRALMETLTCL 276 (300)
Q Consensus 211 a~~GADivmVkPsm--------------m~ld~Ir~~~d~~~~vpi~aY~vSgeY~~~r~Aa~~~~~n~~eal~E~~~~~ 276 (300)
.++|||.|.+-.|+ .+.++++++++.. ++||++.-. .. + .-+.+....+
T Consensus 124 ~~agad~ielN~scpp~~~~~~g~~~~~~~~eil~~v~~~~-~iPV~vKl~-p~-----------~----~~~~~~a~~l 186 (334)
T PRK07565 124 EQAGADALELNIYYLPTDPDISGAEVEQRYLDILRAVKSAV-SIPVAVKLS-PY-----------F----SNLANMAKRL 186 (334)
T ss_pred HHcCCCEEEEeCCCCCCCCCCccccHHHHHHHHHHHHHhcc-CCcEEEEeC-CC-----------c----hhHHHHHHHH
Confidence 35688888872221 2568888888864 799999843 11 1 1234556666
Q ss_pred HHcCCCEEEecc
Q psy15126 277 RRGGADVIISYY 288 (300)
Q Consensus 277 ~r~GAD~Ii~y~ 288 (300)
+++|+|.|.+.-
T Consensus 187 ~~~G~dgI~~~n 198 (334)
T PRK07565 187 DAAGADGLVLFN 198 (334)
T ss_pred HHcCCCeEEEEC
Confidence 678999887643
No 142
>cd06557 KPHMT-like Ketopantoate hydroxymethyltransferase (KPHMT) is the first enzyme in the pantothenate biosynthesis pathway. Ketopantoate hydroxymethyltransferase (KPHMT) catalyzes the first committed step in the biosynthesis of pantothenate (vitamin B5), which is a precursor to coenzyme A and is required for penicillin biosynthesis.
Probab=66.66 E-value=27 Score=33.03 Aligned_cols=72 Identities=15% Similarity=0.180 Sum_probs=44.9
Q ss_pred hh-cCCceeeccCcchHHHHHHHHHhhCCCCCEEeEec-----ccccHHHHHHHhCCCCC-HHHHHHHHHHHHHHcCCCE
Q psy15126 211 VS-QGADFLMVKPALPYLDIISEVKSRHPAYPLFVYQV-----SGEYAMLAFAAQAGALD-LKRALMETLTCLRRGGADV 283 (300)
Q Consensus 211 a~-~GADivmVkPsmm~ld~Ir~~~d~~~~vpi~aY~v-----SgeY~~~r~Aa~~~~~n-~~eal~E~~~~~~r~GAD~ 283 (300)
.+ +||+.|.+.-+.-..+.||.+.+. .+|++.+=- ....+-+|- .|--+ ..+.++|-.+.+.++|||+
T Consensus 100 ~~~aGa~aVkiEd~~~~~~~I~al~~a--gipV~gHiGL~pq~~~~~gg~~~---~grt~~~a~~~i~ra~a~~~AGA~~ 174 (254)
T cd06557 100 MKEAGADAVKLEGGAEVAETIRALVDA--GIPVMGHIGLTPQSVNQLGGYKV---QGKTEEEAERLLEDALALEEAGAFA 174 (254)
T ss_pred HHHhCCeEEEEcCcHHHHHHHHHHHHc--CCCeeccccccceeeeccCCcee---ccCCHHHHHHHHHHHHHHHHCCCCE
Confidence 55 999999666666688999998886 588774411 111111110 01001 1356677777777899999
Q ss_pred EEec
Q psy15126 284 IISY 287 (300)
Q Consensus 284 Ii~y 287 (300)
|..-
T Consensus 175 i~lE 178 (254)
T cd06557 175 LVLE 178 (254)
T ss_pred EEEc
Confidence 9874
No 143
>COG1794 RacX Aspartate racemase [Cell envelope biogenesis, outer membrane]
Probab=66.20 E-value=40 Score=32.12 Aligned_cols=91 Identities=20% Similarity=0.206 Sum_probs=59.3
Q ss_pred hHhHHHHHHHHHhhhcccccCCCCCccccchhhhcCCceeeccCcch--HHHHHHHHH----------------hh-CCC
Q psy15126 179 EKTLKRLADISKAFSDAVYVPNHNTDRFQARDVSQGADFLMVKPALP--YLDIISEVK----------------SR-HPA 239 (300)
Q Consensus 179 d~tl~~l~~~a~~~a~~~~~~~~n~~~~~~~Da~~GADivmVkPsmm--~ld~Ir~~~----------------d~-~~~ 239 (300)
|+.=+.|.+.|+.+ .+.|||++.+.-..| +.|-|++.. .. ...
T Consensus 58 ~~~~~~L~~~a~~L------------------e~~GAd~i~l~~NT~H~~~d~iq~~~~iPllhIidaTa~~ik~~g~kk 119 (230)
T COG1794 58 DEAGEILIDAAKKL------------------ERAGADFIVLPTNTMHKVADDIQKAVGIPLLHIIDATAKAIKAAGAKK 119 (230)
T ss_pred ccHHHHHHHHHHHH------------------HhcCCCEEEEeCCcHHHHHHHHHHhcCCCeehHHHHHHHHHHhcCCce
Confidence 45567899999998 689999997766655 666666432 11 334
Q ss_pred CCEEeEec---ccccHHHHHHH-----------------------hCC-CCC-HHHHHHHHHHHHHHcCCCEEEec
Q psy15126 240 YPLFVYQV---SGEYAMLAFAA-----------------------QAG-ALD-LKRALMETLTCLRRGGADVIISY 287 (300)
Q Consensus 240 vpi~aY~v---SgeY~~~r~Aa-----------------------~~~-~~n-~~eal~E~~~~~~r~GAD~Ii~y 287 (300)
+-+++=.- +|+|---...- ..| ..| .++++++...++++.|||.||.-
T Consensus 120 vgLLgT~~Tm~~~fY~~~l~~~gievvvPdd~~q~~v~~iIy~El~~G~~~~~sr~~~~~ii~~l~~~Gae~vIlG 195 (230)
T COG1794 120 VGLLGTRFTMEQGFYRKRLEEKGIEVVVPDDDEQAEVNRIIYEELCQGIVKDASRELYLAVIERLAERGAEGVILG 195 (230)
T ss_pred eEEeeccchHHhHHHHHHHHHCCceEecCCHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHcCCCEEEEe
Confidence 44444322 67774322211 123 332 48999999999999999999853
No 144
>PRK11613 folP dihydropteroate synthase; Provisional
Probab=65.50 E-value=26 Score=33.64 Aligned_cols=70 Identities=19% Similarity=0.330 Sum_probs=43.6
Q ss_pred hhcCCceeecc-----Ccch----------HHHHHHHHHhhCCCCCEEeEec-ccccHHHHHHHhCC--CC----CH-HH
Q psy15126 211 VSQGADFLMVK-----PALP----------YLDIISEVKSRHPAYPLFVYQV-SGEYAMLAFAAQAG--AL----DL-KR 267 (300)
Q Consensus 211 a~~GADivmVk-----Psmm----------~ld~Ir~~~d~~~~vpi~aY~v-SgeY~~~r~Aa~~~--~~----n~-~e 267 (300)
+++|||||=|. |... -+.+|+.+++.+ ++|| |+ |-...-++.|.+.| ++ .. ++
T Consensus 48 ~~~GAdIIDIGgeSTrPg~~~v~~eeE~~Rv~pvI~~l~~~~-~~~I---SIDT~~~~va~~AL~~GadiINDI~g~~d~ 123 (282)
T PRK11613 48 INAGATIIDVGGESTRPGAAEVSVEEELDRVIPVVEAIAQRF-EVWI---SVDTSKPEVIRESAKAGAHIINDIRSLSEP 123 (282)
T ss_pred HHCCCcEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcC-CCeE---EEECCCHHHHHHHHHcCCCEEEECCCCCCH
Confidence 89999999998 8632 233666666555 6776 44 55667777777653 11 10 23
Q ss_pred HHHHHHHHHHHcCCCEEEec
Q psy15126 268 ALMETLTCLRRGGADVIISY 287 (300)
Q Consensus 268 al~E~~~~~~r~GAD~Ii~y 287 (300)
.+.|.+ ++.|+-+|+..
T Consensus 124 ~~~~~~---a~~~~~vVlmh 140 (282)
T PRK11613 124 GALEAA---AETGLPVCLMH 140 (282)
T ss_pred HHHHHH---HHcCCCEEEEc
Confidence 444543 45688888764
No 145
>PLN02489 homocysteine S-methyltransferase
Probab=65.41 E-value=1.4e+02 Score=29.11 Aligned_cols=71 Identities=15% Similarity=0.147 Sum_probs=42.5
Q ss_pred CcEEEeeecCCCCCCCCcceee-C-CCC-ceecHHhHHHHHHHHHHHHHcCCCccccCCCCcch-HHHHHHHHhhCC
Q psy15126 31 SLTIACDVCLCGYTSHGHCAIF-N-EDG-SIHYEKTLKRLADISKAFSDAGAHIVAPSDMMDNR-IHAIKQSLFTSR 103 (300)
Q Consensus 31 ~l~i~~Dvclc~yt~hGHcgi~-~-~~g-~i~nd~Tl~~l~~~A~~~A~aGad~vAPSdmMDgr-v~air~aLd~~g 103 (300)
++.|+.++. ||...=+.|=- + .-| .+..+.=.+...+|+..+.++|+|+++--.|++-. ..++.+++.+.+
T Consensus 132 ~~~VaGsiG--P~g~~l~~g~ey~g~y~~~~~~~e~~~~~~~qi~~l~~~gvD~i~~ET~~~l~E~~a~~~~~~~~~ 206 (335)
T PLN02489 132 PILVAASIG--SYGAYLADGSEYSGDYGPSVTLEKLKDFHRRRLQVLAEAGPDLIAFETIPNKLEAQAYVELLEEEN 206 (335)
T ss_pred CcEEEEEcC--CccccccCCcccCCCCccCCCHHHHHHHHHHHHHHHHhCCCCEEEEeccCChHHHHHHHHHHHHcC
Confidence 577888753 55433222210 0 001 24555556666678888899999999997766543 446666666554
No 146
>PRK05926 hypothetical protein; Provisional
Probab=65.29 E-value=25 Score=34.72 Aligned_cols=52 Identities=27% Similarity=0.387 Sum_probs=34.9
Q ss_pred HHHHHHHHHhhCCCCCEEeEecccccHHHHHHHhCCCCCHHHHHHHHHHHHHHcCCCEEE
Q psy15126 226 YLDIISEVKSRHPAYPLFVYQVSGEYAMLAFAAQAGALDLKRALMETLTCLRRGGADVII 285 (300)
Q Consensus 226 ~ld~Ir~~~d~~~~vpi~aY~vSgeY~~~r~Aa~~~~~n~~eal~E~~~~~~r~GAD~Ii 285 (300)
|.+++|.+++.+|++-+-+.+ -.||.-++.-. +. -..|.+..+|++|.|.+-
T Consensus 133 ~~e~i~~Ik~~~p~i~i~a~s-~~Ei~~~~~~~--~~-----~~~e~l~~LkeAGl~~~~ 184 (370)
T PRK05926 133 YEELFSKIKQNFPDLHIKALT-AIEYAYLSKLD--NL-----PVKEVLQTLKIAGLDSIP 184 (370)
T ss_pred HHHHHHHHHHhCCCeeEEECC-HHHHHHHHhhc--CC-----CHHHHHHHHHHcCcCccC
Confidence 789999999998877766652 22565554321 21 236777788888888755
No 147
>PRK12330 oxaloacetate decarboxylase; Provisional
Probab=64.57 E-value=27 Score=36.31 Aligned_cols=47 Identities=21% Similarity=0.299 Sum_probs=34.2
Q ss_pred hHHHHHHHHHhhhcccccCCCCCccccchhhhcCCceeeccCc--ch----HHHHHHHHHhhCC-CCCEEeE
Q psy15126 181 TLKRLADISKAFSDAVYVPNHNTDRFQARDVSQGADFLMVKPA--LP----YLDIISEVKSRHP-AYPLFVY 245 (300)
Q Consensus 181 tl~~l~~~a~~~a~~~~~~~~n~~~~~~~Da~~GADivmVkPs--mm----~ld~Ir~~~d~~~-~vpi~aY 245 (300)
|++.+.+.+... .+.|||.|-+|=. ++ --+.|+.++++++ ++||-.+
T Consensus 153 t~e~~~~~a~~l------------------~~~Gad~I~IkDtaGll~P~~~~~LV~~Lk~~~~~~ipI~~H 206 (499)
T PRK12330 153 TVEGFVEQAKRL------------------LDMGADSICIKDMAALLKPQPAYDIVKGIKEACGEDTRINLH 206 (499)
T ss_pred CHHHHHHHHHHH------------------HHcCCCEEEeCCCccCCCHHHHHHHHHHHHHhCCCCCeEEEE
Confidence 677888887776 6899999977654 22 4567777788775 7887644
No 148
>COG0320 LipA Lipoate synthase [Coenzyme metabolism]
Probab=64.52 E-value=8.3 Score=37.88 Aligned_cols=49 Identities=20% Similarity=0.344 Sum_probs=39.0
Q ss_pred HHHHHHHHHhhCCCCCEEeEecccccHHHHHHHhCCCCCHHHHHHHHHHHHHHcCCCEEEe
Q psy15126 226 YLDIISEVKSRHPAYPLFVYQVSGEYAMLAFAAQAGALDLKRALMETLTCLRRGGADVIIS 286 (300)
Q Consensus 226 ~ld~Ir~~~d~~~~vpi~aY~vSgeY~~~r~Aa~~~~~n~~eal~E~~~~~~r~GAD~Ii~ 286 (300)
-|+.++.+|+..|++|.=| ..-.|.-..++=++|++.|+++.|.||+-.
T Consensus 199 SL~~L~~~k~~~P~i~TKS------------giMlGLGEt~~Ev~e~m~DLr~~gvdilTi 247 (306)
T COG0320 199 SLSLLERAKELGPDIPTKS------------GLMVGLGETDEEVIEVMDDLRSAGVDILTI 247 (306)
T ss_pred HHHHHHHHHHhCCCccccc------------ceeeecCCcHHHHHHHHHHHHHcCCCEEEe
Confidence 4899999999888776533 234566677888999999999999999754
No 149
>cd01572 QPRTase Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other.
Probab=64.41 E-value=34 Score=32.32 Aligned_cols=66 Identities=18% Similarity=0.254 Sum_probs=42.9
Q ss_pred cCCCCCccccchhhhcCCceeeccCcchHHHHHHHHHhhCC-CCCEEeEecccccHHHHHHHhCCCCCHHHHHHHHHHHH
Q psy15126 198 VPNHNTDRFQARDVSQGADFLMVKPALPYLDIISEVKSRHP-AYPLFVYQVSGEYAMLAFAAQAGALDLKRALMETLTCL 276 (300)
Q Consensus 198 ~~~~n~~~~~~~Da~~GADivmVkPsmm~ld~Ir~~~d~~~-~vpi~aY~vSgeY~~~r~Aa~~~~~n~~eal~E~~~~~ 276 (300)
|-.+|.+...+. +++|||+||+-| |+++.++++.+..+ ++|+.+= |-+|.+ -+..+
T Consensus 187 vev~s~eea~~A-~~~gaDyI~ld~--~~~e~l~~~~~~~~~~ipi~Ai---------------GGI~~~-----ni~~~ 243 (268)
T cd01572 187 VEVETLEQLKEA-LEAGADIIMLDN--MSPEELREAVALLKGRVLLEAS---------------GGITLE-----NIRAY 243 (268)
T ss_pred EEECCHHHHHHH-HHcCCCEEEECC--cCHHHHHHHHHHcCCCCcEEEE---------------CCCCHH-----HHHHH
Confidence 334454443332 579999999987 46788888877543 5787664 345653 33455
Q ss_pred HHcCCCEEEe
Q psy15126 277 RRGGADVIIS 286 (300)
Q Consensus 277 ~r~GAD~Ii~ 286 (300)
.+.|+|.|-+
T Consensus 244 a~~Gvd~Iav 253 (268)
T cd01572 244 AETGVDYISV 253 (268)
T ss_pred HHcCCCEEEE
Confidence 5789999865
No 150
>cd01573 modD_like ModD; Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase) present in some modABC operons in bacteria, which are involved in molybdate transport. In general, QPRTases are part of the de novo synthesis pathway of NAD in both prokaryotes and eukaryotes. They catalyse the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide.
Probab=64.05 E-value=36 Score=32.24 Aligned_cols=70 Identities=23% Similarity=0.397 Sum_probs=41.2
Q ss_pred ccCCCCCccccchhhhcCCceeeccCcch-HH-HHHHHHHhhCCCCCEEeEecccccHHHHHHHhCCCCCHHHHHHHHHH
Q psy15126 197 YVPNHNTDRFQARDVSQGADFLMVKPALP-YL-DIISEVKSRHPAYPLFVYQVSGEYAMLAFAAQAGALDLKRALMETLT 274 (300)
Q Consensus 197 ~~~~~n~~~~~~~Da~~GADivmVkPsmm-~l-d~Ir~~~d~~~~vpi~aY~vSgeY~~~r~Aa~~~~~n~~eal~E~~~ 274 (300)
=|--+|....... +++|||+||+.|=.+ -+ ..++.++..++++|+.+= |-+|. |.+.
T Consensus 187 gVev~t~eea~~A-~~~gaD~I~ld~~~p~~l~~~~~~~~~~~~~i~i~As---------------GGI~~-----~ni~ 245 (272)
T cd01573 187 VVEVDSLEEALAA-AEAGADILQLDKFSPEELAELVPKLRSLAPPVLLAAA---------------GGINI-----ENAA 245 (272)
T ss_pred EEEcCCHHHHHHH-HHcCCCEEEECCCCHHHHHHHHHHHhccCCCceEEEE---------------CCCCH-----HHHH
Confidence 3444555444332 579999999876422 22 233333333567888764 33454 3445
Q ss_pred HHHHcCCCEEEec
Q psy15126 275 CLRRGGADVIISY 287 (300)
Q Consensus 275 ~~~r~GAD~Ii~y 287 (300)
.+.+.|+|.|.+-
T Consensus 246 ~~~~~Gvd~I~vs 258 (272)
T cd01573 246 AYAAAGADILVTS 258 (272)
T ss_pred HHHHcCCcEEEEC
Confidence 5668999999553
No 151
>PF02574 S-methyl_trans: Homocysteine S-methyltransferase; InterPro: IPR003726 S-methylmethionine: homocysteine methyltransferase 2.1.1.10 from EC from Escherichia coli accepts selenohomocysteine as a substrate. S-methylmethionine is an abundant plant product that can be utilised for methionine biosynthesis []. Human methionine synthase (5-methyltetrahydrofolate:L-homocysteine S-transmethylase; 2.1.1.13 from EC) shares 53 and 63% identity with the E. coli and the presumptive Caenorhabditis elegans proteins, respectively, and contains all residues implicated in B12 binding to the E. coli protein []. Betaine--homocysteine S-methyltransferase (2.1.1.5 from EC) converts betaine and homocysteine to dimethylglycine and methionine, respectively. This reaction is also required for the irreversible oxidation of choline [].; GO: 0008898 homocysteine S-methyltransferase activity; PDB: 1UMY_A 1LT8_B 1LT7_B 3BOF_B 1Q7Q_B 1Q85_B 1Q7Z_A 1Q7M_A 1Q8A_B 1Q8J_B ....
Probab=63.81 E-value=13 Score=34.81 Aligned_cols=85 Identities=14% Similarity=0.175 Sum_probs=51.6
Q ss_pred CChHHHHHHHHHHhCCC------cEEEeeecCCCCCCCCcceeeCCCCceecHHhHHHHHHHHHHHHHcCCCccccCCCC
Q psy15126 15 DNPLFQVIPMIRKQFPS------LTIACDVCLCGYTSHGHCAIFNEDGSIHYEKTLKRLADISKAFSDAGAHIVAPSDMM 88 (300)
Q Consensus 15 ~~~~~~~i~~ik~~~p~------l~i~~Dvclc~yt~hGHcgi~~~~g~i~nd~Tl~~l~~~A~~~A~aGad~vAPSdmM 88 (300)
..+..++++.-|+...+ ..|+.++-=..=+-.|- -+..++.+..++=.+...+|+..++++|+|.+.--.|.
T Consensus 81 ~~l~~~av~lA~~a~~~~~~~~~~~VaGsiGP~ga~l~g~--~y~~~~~~~~~~~~~~~~~q~~~l~~~gvD~l~~ET~~ 158 (305)
T PF02574_consen 81 EELNRAAVELAREAADEYGSGRKVLVAGSIGPYGAYLSGS--EYPGDYGLSFEELRDFHREQAEALADAGVDLLLFETMP 158 (305)
T ss_dssp HHHHHHHHHHHHHHHTT---TT-SEEEEEEE--S----------CTTCTT-HHHHHHHHHHHHHHHHHTT-SEEEEEEEC
T ss_pred HHHHHHHHHHHHHHHhhccCCCccEEEEEcccccccchhh--hccccccccHHHHHHHHHHHHHHHHhcCCCEEEEecCc
Confidence 35667778777766544 78888775221000110 11223445556666777789999999999999996665
Q ss_pred c-chHHHHHHHHhh
Q psy15126 89 D-NRIHAIKQSLFT 101 (300)
Q Consensus 89 D-grv~air~aLd~ 101 (300)
+ ..+.++.+++.+
T Consensus 159 ~~~E~~aa~~a~~~ 172 (305)
T PF02574_consen 159 SLAEAKAALEAIKE 172 (305)
T ss_dssp -CSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh
Confidence 3 347778888877
No 152
>PF09587 PGA_cap: Bacterial capsule synthesis protein PGA_cap; InterPro: IPR019079 CapA is a putative poly-gamma-glutamate capsule biosynthesis protein found in bacteria. Poly-gamma-glutamate is a natural polymer that may be involved in virulence and may help bacteria survive in high salt concentrations. It is a surface-associated protein [].
Probab=63.49 E-value=87 Score=28.41 Aligned_cols=36 Identities=22% Similarity=0.255 Sum_probs=26.1
Q ss_pred HHHHHHHHcCCCcccc--CCCCcchH---HHHHHHHhhCCC
Q psy15126 69 DISKAFSDAGAHIVAP--SDMMDNRI---HAIKQSLFTSRQ 104 (300)
Q Consensus 69 ~~A~~~A~aGad~vAP--SdmMDgrv---~air~aLd~~g~ 104 (300)
+.+..+.++|.+++.. +=.||--. ....+.|+++|+
T Consensus 66 ~~~~~L~~~G~d~vslANNH~~D~G~~gl~~Tl~~L~~~gi 106 (250)
T PF09587_consen 66 EILDALKDAGFDVVSLANNHIFDYGEEGLLDTLEALDKAGI 106 (250)
T ss_pred HHHHHHHHcCCCEEEecCCCCccccHHHHHHHHHHHHHCCC
Confidence 4456678999999988 56777443 345667888888
No 153
>PRK09140 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; Reviewed
Probab=63.16 E-value=93 Score=28.21 Aligned_cols=137 Identities=15% Similarity=0.099 Sum_probs=76.1
Q ss_pred cHHhHHHHHHHHHHHHHcCCCccccCCCCcchHHHHHHHHhhCCCCCCcccccchhhhhcccchh--hhhhhcCCCCCCC
Q psy15126 60 YEKTLKRLADISKAFSDAGAHIVAPSDMMDNRIHAIKQSLFTSRQSSTTGLLSYSAKFCSAFYGP--FREAAGSAPTFGD 137 (300)
Q Consensus 60 nd~Tl~~l~~~A~~~A~aGad~vAPSdmMDgrv~air~aLd~~g~~~~v~ImsysaK~aS~~YGP--fRda~gS~~~~gd 137 (300)
-..+.+.+.+++..+.+.|+.++-....-++-.+.+++.-...+-...+|. -++.-+ .+.|......|
T Consensus 17 r~~~~~~~~~~~~a~~~gGi~~iEvt~~~~~~~~~i~~l~~~~~~~~~iGa--------GTV~~~~~~~~a~~aGA~f-- 86 (206)
T PRK09140 17 RGITPDEALAHVGALIEAGFRAIEIPLNSPDPFDSIAALVKALGDRALIGA--------GTVLSPEQVDRLADAGGRL-- 86 (206)
T ss_pred eCCCHHHHHHHHHHHHHCCCCEEEEeCCCccHHHHHHHHHHHcCCCcEEeE--------EecCCHHHHHHHHHcCCCE--
Confidence 344889999999999999999999976666655566665544331011111 001111 12222222211
Q ss_pred cceeeCCCCCCceEEEEeecccCCCCCCccccccCCCcccchHhHHHHHHHHHhhhcccccCCCCCccccchhhhcCCce
Q psy15126 138 RSCYQLPCGSKGLAIRAAVCLCGYTSHGHCAIFNEDGSIHYEKTLKRLADISKAFSDAVYVPNHNTDRFQARDVSQGADF 217 (300)
Q Consensus 138 r~~yQ~~~~~~~~ai~~dvclc~yt~hGHcgi~~~~g~i~nd~tl~~l~~~a~~~a~~~~~~~~n~~~~~~~Da~~GADi 217 (300)
- |.+-+ |. .+.+.+.. ....++|--+|..=...=.+.|||+
T Consensus 87 ----i-----------------------vsp~~--------~~---~v~~~~~~-~~~~~~~G~~t~~E~~~A~~~Gad~ 127 (206)
T PRK09140 87 ----I-----------------------VTPNT--------DP---EVIRRAVA-LGMVVMPGVATPTEAFAALRAGAQA 127 (206)
T ss_pred ----E-----------------------ECCCC--------CH---HHHHHHHH-CCCcEEcccCCHHHHHHHHHcCCCE
Confidence 1 11111 11 12222222 2344555555554344446799999
Q ss_pred eeccCc-chHHHHHHHHHhhCC-CCCEEeE
Q psy15126 218 LMVKPA-LPYLDIISEVKSRHP-AYPLFVY 245 (300)
Q Consensus 218 vmVkPs-mm~ld~Ir~~~d~~~-~vpi~aY 245 (300)
|.+=|+ ..=++.|++++..++ ++|+++-
T Consensus 128 vk~Fpa~~~G~~~l~~l~~~~~~~ipvvai 157 (206)
T PRK09140 128 LKLFPASQLGPAGIKALRAVLPPDVPVFAV 157 (206)
T ss_pred EEECCCCCCCHHHHHHHHhhcCCCCeEEEE
Confidence 988776 334777888887775 7999876
No 154
>PRK09836 DNA-binding transcriptional activator CusR; Provisional
Probab=61.95 E-value=35 Score=28.69 Aligned_cols=35 Identities=20% Similarity=0.436 Sum_probs=26.4
Q ss_pred cCCceeeccCcch---HHHHHHHHHhhCCCCCEEeEec
Q psy15126 213 QGADFLMVKPALP---YLDIISEVKSRHPAYPLFVYQV 247 (300)
Q Consensus 213 ~GADivmVkPsmm---~ld~Ir~~~d~~~~vpi~aY~v 247 (300)
...|+|++-..++ -++.+++++...+++||+..+.
T Consensus 43 ~~~dlvild~~~~~~~g~~~~~~lr~~~~~~pii~ls~ 80 (227)
T PRK09836 43 GDYDLIILDIMLPDVNGWDIVRMLRSANKGMPILLLTA 80 (227)
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCCCCEEEEEc
Confidence 4568888876544 6788888887767899998864
No 155
>TIGR00736 nifR3_rel_arch TIM-barrel protein, putative. Members of this family show a distant relationship by PSI-BLAST to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase. At least two closely related but well-separable families among the bacteria, the nifR3/yhdG family and the yjbN family, share a more distant relationship to this family of shorter, exclusively archaeal proteins.
Probab=61.70 E-value=37 Score=31.70 Aligned_cols=115 Identities=16% Similarity=0.122 Sum_probs=62.6
Q ss_pred EEEEeecccCC--CCCCccccccCCCcccchHhHHHHHHHHHhhhccccc------CCCCCccccchhhhcCCceeeccC
Q psy15126 151 AIRAAVCLCGY--TSHGHCAIFNEDGSIHYEKTLKRLADISKAFSDAVYV------PNHNTDRFQARDVSQGADFLMVKP 222 (300)
Q Consensus 151 ai~~dvclc~y--t~hGHcgi~~~~g~i~nd~tl~~l~~~a~~~a~~~~~------~~~n~~~~~~~Da~~GADivmVkP 222 (300)
.+.+--|-||- -..+++|-.- ..+-+.+..+.+.....-.-|.| +..++-.+...=.++|||.|.|..
T Consensus 94 d~IdiN~gCP~~~v~~~g~G~~L----l~dp~~l~~iv~av~~~~~PVsvKiR~~~~~~~~~~~a~~l~~aGad~i~Vd~ 169 (231)
T TIGR00736 94 DIIEINAHCRQPEITEIGIGQEL----LKNKELLKEFLTKMKELNKPIFVKIRGNCIPLDELIDALNLVDDGFDGIHVDA 169 (231)
T ss_pred CEEEEECCCCcHHHcCCCCchhh----cCCHHHHHHHHHHHHcCCCcEEEEeCCCCCcchHHHHHHHHHHcCCCEEEEee
Confidence 35666788877 3445554331 11222333333333321112222 111222444444689999998853
Q ss_pred cc-----hHHHHHHHHHhhCCCCCEEeEecccccHHHHHHHhCCCCCHHHHHHHHHHHHHHcCCCEEEecc
Q psy15126 223 AL-----PYLDIISEVKSRHPAYPLFVYQVSGEYAMLAFAAQAGALDLKRALMETLTCLRRGGADVIISYY 288 (300)
Q Consensus 223 sm-----m~ld~Ir~~~d~~~~vpi~aY~vSgeY~~~r~Aa~~~~~n~~eal~E~~~~~~r~GAD~Ii~y~ 288 (300)
-. .-++.|+++++..+++||.+= -|..+.+++ .|.+ +.|||.||+--
T Consensus 170 ~~~g~~~a~~~~I~~i~~~~~~ipIIgN--------------GgI~s~eda-~e~l----~~GAd~VmvgR 221 (231)
T TIGR00736 170 MYPGKPYADMDLLKILSEEFNDKIIIGN--------------NSIDDIESA-KEML----KAGADFVSVAR 221 (231)
T ss_pred CCCCCchhhHHHHHHHHHhcCCCcEEEE--------------CCcCCHHHH-HHHH----HhCCCeEEEcH
Confidence 22 138899999998655998873 234444333 4443 36999999854
No 156
>COG1646 Predicted phosphate-binding enzymes, TIM-barrel fold [General function prediction only]
Probab=61.60 E-value=11 Score=36.03 Aligned_cols=34 Identities=18% Similarity=0.433 Sum_probs=26.9
Q ss_pred hhcCCceeeccCcch-----HHHHHHHHHhhCCCCCEEeE
Q psy15126 211 VSQGADFLMVKPALP-----YLDIISEVKSRHPAYPLFVY 245 (300)
Q Consensus 211 a~~GADivmVkPsmm-----~ld~Ir~~~d~~~~vpi~aY 245 (300)
++.|.|.|||.=|.- ....++++|+++ ++|+.-.
T Consensus 38 ~~~GTDaImIGGS~gvt~~~~~~~v~~ik~~~-~lPvilf 76 (240)
T COG1646 38 AEAGTDAIMIGGSDGVTEENVDNVVEAIKERT-DLPVILF 76 (240)
T ss_pred HHcCCCEEEECCcccccHHHHHHHHHHHHhhc-CCCEEEe
Confidence 789999999999842 577888888775 7887643
No 157
>cd00452 KDPG_aldolase KDPG and KHG aldolase. This family belongs to the class I adolases whose reaction mechanism involves Schiff base formation between a substrate carbonyl and lysine residue in the active site. 2-keto-3-deoxy-6-phosphogluconate (KDPG) aldolase, is best known for its role in the Entner-Doudoroff pathway of bacteria, where it catalyzes the reversible cleavage of KDPG to pyruvate and glyceraldehyde-3-phosphate. 2-keto-4-hydroxyglutarate (KHG) aldolase, which has enzymatic specificity toward glyoxylate, forming KHG in the presence of pyruvate, and is capable of regulating glyoxylate levels in the glyoxylate bypass, an alternate pathway when bacteria are grown on acetate carbon sources.
Probab=60.71 E-value=65 Score=28.17 Aligned_cols=82 Identities=17% Similarity=0.182 Sum_probs=49.1
Q ss_pred hhcCCceeeccCc-chHHHHHHHHHhhCCCCCEEeEeccccc-------------------HHHHHHHh-------CCCC
Q psy15126 211 VSQGADFLMVKPA-LPYLDIISEVKSRHPAYPLFVYQVSGEY-------------------AMLAFAAQ-------AGAL 263 (300)
Q Consensus 211 a~~GADivmVkPs-mm~ld~Ir~~~d~~~~vpi~aY~vSgeY-------------------~~~r~Aa~-------~~~~ 263 (300)
++.|+++|=|.=+ ...+..|+++++.++++.|-+=.+.-.. ..+..+++ -|..
T Consensus 26 ~~~G~~~vev~~~~~~~~~~i~~l~~~~~~~~iGag~v~~~~~~~~a~~~Ga~~i~~p~~~~~~~~~~~~~~~~~i~gv~ 105 (190)
T cd00452 26 IEGGIRAIEITLRTPGALEAIRALRKEFPEALIGAGTVLTPEQADAAIAAGAQFIVSPGLDPEVVKAANRAGIPLLPGVA 105 (190)
T ss_pred HHCCCCEEEEeCCChhHHHHHHHHHHHCCCCEEEEEeCCCHHHHHHHHHcCCCEEEcCCCCHHHHHHHHHcCCcEECCcC
Confidence 6789999866433 2377899999998887866554442111 11111111 1455
Q ss_pred CHHHHHHHHHHHHHHcCCCEEEecchH----HHHHHHh
Q psy15126 264 DLKRALMETLTCLRRGGADVIISYYTP----RVLEWLR 297 (300)
Q Consensus 264 n~~eal~E~~~~~~r~GAD~Ii~y~A~----~~ld~l~ 297 (300)
+.+ |....+ ++|||+|..+|+. +++++++
T Consensus 106 t~~----e~~~A~-~~Gad~i~~~p~~~~g~~~~~~l~ 138 (190)
T cd00452 106 TPT----EIMQAL-ELGADIVKLFPAEAVGPAYIKALK 138 (190)
T ss_pred CHH----HHHHHH-HCCCCEEEEcCCcccCHHHHHHHH
Confidence 554 444555 6999999998754 4455544
No 158
>TIGR00742 yjbN tRNA dihydrouridine synthase A. Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.
Probab=60.63 E-value=50 Score=31.96 Aligned_cols=34 Identities=12% Similarity=0.268 Sum_probs=26.3
Q ss_pred hhcCCceeeccCcch----------------HHHHHHHHHhhCCCCCEEe
Q psy15126 211 VSQGADFLMVKPALP----------------YLDIISEVKSRHPAYPLFV 244 (300)
Q Consensus 211 a~~GADivmVkPsmm----------------~ld~Ir~~~d~~~~vpi~a 244 (300)
.++|+|.|.|-+-.. ..+.|+++++.++++||+.
T Consensus 151 ~~~G~~~itvHgRt~~~qg~sg~~~~~~~~~~~~~i~~vk~~~~~ipVi~ 200 (318)
T TIGR00742 151 SGKGCQNFIVHARKAWLSGLSPKENREIPPLRYERVYQLKKDFPHLTIEI 200 (318)
T ss_pred HHcCCCEEEEeCCchhhcCCCccccccCCchhHHHHHHHHHhCCCCcEEE
Confidence 479999998877521 3578999998877899875
No 159
>TIGR03551 F420_cofH 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, CofH subunit. This enzyme, together with CofG, complete the biosynthesis of 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, the chromophore of coenzyme F420. The chromophore is also used in cyanobacteria DNA photolyases.
Probab=60.03 E-value=68 Score=30.76 Aligned_cols=81 Identities=26% Similarity=0.334 Sum_probs=50.3
Q ss_pred hHhHHHHHHHHHhhhcccccCCCCCccccchhhhcCCc-eeec---cCcch---HHHHHHHHHhhCCCCCEEeEeccccc
Q psy15126 179 EKTLKRLADISKAFSDAVYVPNHNTDRFQARDVSQGAD-FLMV---KPALP---YLDIISEVKSRHPAYPLFVYQVSGEY 251 (300)
Q Consensus 179 d~tl~~l~~~a~~~a~~~~~~~~n~~~~~~~Da~~GAD-ivmV---kPsmm---~ld~Ir~~~d~~~~vpi~aY~vSgeY 251 (300)
..|.+.+.+.+... .+.|+. +.++ .|... +++++|.+++.++++.+.+|+. .|.
T Consensus 69 ~ls~eeI~e~~~~~------------------~~~G~~~i~l~gG~~p~~~~~~~~~i~~~Ik~~~~~i~~~~~t~-~ei 129 (343)
T TIGR03551 69 LLSLEEIAERAAEA------------------WKAGATEVCIQGGIHPDLDGDFYLDILRAVKEEVPGMHIHAFSP-MEV 129 (343)
T ss_pred cCCHHHHHHHHHHH------------------HHCCCCEEEEEeCCCCCCCHHHHHHHHHHHHHHCCCceEEecCH-HHH
Confidence 35677777666554 355763 4444 23321 6999999999888888888731 111
Q ss_pred HHHHHHHhCCCCCHHHHHHHHHHHHHHcCCCEEE
Q psy15126 252 AMLAFAAQAGALDLKRALMETLTCLRRGGADVII 285 (300)
Q Consensus 252 ~~~r~Aa~~~~~n~~eal~E~~~~~~r~GAD~Ii 285 (300)
...+...|..+ .|.+..+|++|.|.+.
T Consensus 130 --~~~~~~~g~~~-----~e~l~~LkeAGl~~i~ 156 (343)
T TIGR03551 130 --YYGARNSGLSV-----EEALKRLKEAGLDSMP 156 (343)
T ss_pred --HHHHHHcCCCH-----HHHHHHHHHhCccccc
Confidence 11122345433 5778888889999775
No 160
>PRK12376 putative translaldolase; Provisional
Probab=59.95 E-value=6.7 Score=36.81 Aligned_cols=68 Identities=16% Similarity=0.036 Sum_probs=37.0
Q ss_pred cCCCCCChHHHHHHHHHHhCCCcEEEeeecCCCCCC-CCcce-----eeCCCCceecHHhHHHHHHHHHH--HHHc--CC
Q psy15126 10 FADTPDNPLFQVIPMIRKQFPSLTIACDVCLCGYTS-HGHCA-----IFNEDGSIHYEKTLKRLADISKA--FSDA--GA 79 (300)
Q Consensus 10 ~a~~~~~~~~~~i~~ik~~~p~l~i~~Dvclc~yt~-hGHcg-----i~~~~g~i~nd~Tl~~l~~~A~~--~A~a--Ga 79 (300)
.+.+.++.+.+|.+. .+..|+++| =-|-|. .|-.| .+...|--.| .|+=--+.||+. .|.+ |+
T Consensus 66 ~~~d~~~mv~eA~~l-~~~~~nv~V-----KIP~T~~~G~~gl~Ai~~L~~~GI~vn-~T~vfs~~Qa~~a~~A~ag~ga 138 (236)
T PRK12376 66 FADDLETMEKEAEKI-ASLGENVYV-----KIPITNTKGESTIPLIKKLSADGVKLN-VTAIFTIEQVKEVVDALTPGVP 138 (236)
T ss_pred ecCCHHHHHHHHHHH-HHhCCCeEE-----EECCcCccchhHHHHHHHHHHCCCeEE-EeeecCHHHHHHHHHHhcCCCC
Confidence 345667777777654 666788665 237774 55344 2333443233 233223345542 2333 69
Q ss_pred Ccccc
Q psy15126 80 HIVAP 84 (300)
Q Consensus 80 d~vAP 84 (300)
+.|+|
T Consensus 139 ~yisp 143 (236)
T PRK12376 139 AIVSV 143 (236)
T ss_pred eEEEE
Confidence 99999
No 161
>PLN02591 tryptophan synthase
Probab=59.89 E-value=60 Score=30.62 Aligned_cols=31 Identities=23% Similarity=0.414 Sum_probs=22.7
Q ss_pred HhHHHHHHHHHHHHHcCCCcccc----CC-CCcchH
Q psy15126 62 KTLKRLADISKAFSDAGAHIVAP----SD-MMDNRI 92 (300)
Q Consensus 62 ~Tl~~l~~~A~~~A~aGad~vAP----Sd-mMDgrv 92 (300)
.+++...+.+..+.++|+|++-. || +.||-+
T Consensus 13 P~~e~~~~~~~~l~~~Gad~iElGiPfSDP~aDGpv 48 (250)
T PLN02591 13 PDLDTTAEALRLLDACGADVIELGVPYSDPLADGPV 48 (250)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEECCCCCCCcccCHH
Confidence 34555566778899999999976 44 568865
No 162
>PF02548 Pantoate_transf: Ketopantoate hydroxymethyltransferase; InterPro: IPR003700 The panB gene from Escherichia coli encodes the first enzyme of the pantothenate biosynthesis pathway, ketopantoate hydroxymethyltransferase (KPHMT) 2.1.2.11 from EC. Fungal ketopantoate hydroxymethyltransferase is essential for the biosynthesis of coenzyme A, while the pathway intermediate 4'-phosphopantetheine is required for penicillin production [].; GO: 0003864 3-methyl-2-oxobutanoate hydroxymethyltransferase activity, 0015940 pantothenate biosynthetic process; PDB: 3VAV_G 1M3U_A 3EZ4_J 1O68_C 1O66_A 1OY0_D.
Probab=59.78 E-value=25 Score=33.82 Aligned_cols=82 Identities=16% Similarity=0.202 Sum_probs=48.2
Q ss_pred hh-cCCceeeccCcchHHHHHHHHHhhCCCCCEEeEec-----ccccHHHHHHHhCC-CCCHHHHHHHHHHHHHHcCCCE
Q psy15126 211 VS-QGADFLMVKPALPYLDIISEVKSRHPAYPLFVYQV-----SGEYAMLAFAAQAG-ALDLKRALMETLTCLRRGGADV 283 (300)
Q Consensus 211 a~-~GADivmVkPsmm~ld~Ir~~~d~~~~vpi~aY~v-----SgeY~~~r~Aa~~~-~~n~~eal~E~~~~~~r~GAD~ 283 (300)
++ .|||.|-+.-+.-.++.|+.+-+. .+|+|.+== ...+|-+|- .| -.+..+.|+|-.+.+.++||-.
T Consensus 104 ~ke~GadaVKlEGg~~~~~~i~~l~~~--GIPV~gHiGLtPQ~~~~~GGyr~---qGk~~~~a~~l~~~A~ale~AGaf~ 178 (261)
T PF02548_consen 104 MKEAGADAVKLEGGAEIAETIKALVDA--GIPVMGHIGLTPQSVHQLGGYRV---QGKTAEEAEKLLEDAKALEEAGAFA 178 (261)
T ss_dssp HHTTT-SEEEEEBSGGGHHHHHHHHHT--T--EEEEEES-GGGHHHHTSS-----CSTSHHHHHHHHHHHHHHHHHT-SE
T ss_pred HHhcCCCEEEeccchhHHHHHHHHHHC--CCcEEEEecCchhheeccCCceE---EecCHHHHHHHHHHHHHHHHcCccE
Confidence 45 999999444445689999998886 799999831 222222221 12 1234566778888888899998
Q ss_pred EEecchH-HHHHHHh
Q psy15126 284 IISYYTP-RVLEWLR 297 (300)
Q Consensus 284 Ii~y~A~-~~ld~l~ 297 (300)
|..---+ ++++++.
T Consensus 179 ivlE~vp~~la~~It 193 (261)
T PF02548_consen 179 IVLECVPAELAKAIT 193 (261)
T ss_dssp EEEESBBHHHHHHHH
T ss_pred EeeecCHHHHHHHHH
Confidence 8775433 3444443
No 163
>TIGR00284 dihydropteroate synthase-related protein. This protein has been found so far only in the Archaea, and in particular in those archaea that lack a bacterial-type dihydropteroate synthase. The central region of this protein shows considerable homology to the amino-terminal half of dihydropteroate synthases, while the carboxyl-terminal region shows homology to the small, uncharacterized protein slr0651 of Synechocystis PCC6803.
Probab=59.64 E-value=39 Score=35.06 Aligned_cols=91 Identities=11% Similarity=0.094 Sum_probs=53.9
Q ss_pred ccchHhHHHHHHHHHhhhcccccCCCCCccccchhhhcCCceeeccCcc--h----HHHHHHHHHhhCCCCCEEeEeccc
Q psy15126 176 IHYEKTLKRLADISKAFSDAVYVPNHNTDRFQARDVSQGADFLMVKPAL--P----YLDIISEVKSRHPAYPLFVYQVSG 249 (300)
Q Consensus 176 i~nd~tl~~l~~~a~~~a~~~~~~~~n~~~~~~~Da~~GADivmVkPsm--m----~ld~Ir~~~d~~~~vpi~aY~vSg 249 (300)
|.+-..|+.+.+.|..+ +++|||||=|.-.. + -..+|+.+++.+ ++||..= |.
T Consensus 158 I~~a~~l~~i~~~A~~~------------------~~~GADIIDIG~~st~p~~~~v~~~V~~l~~~~-~~pISID--T~ 216 (499)
T TIGR00284 158 IPPTVAEDGIEGLAARM------------------ERDGADMVALGTGSFDDDPDVVKEKVKTALDAL-DSPVIAD--TP 216 (499)
T ss_pred EcCCcchHHHHHHHHHH------------------HHCCCCEEEECCCcCCCcHHHHHHHHHHHHhhC-CCcEEEe--CC
Confidence 55555667777777777 89999999775431 2 456777777665 6787433 55
Q ss_pred ccHHHHHHHhCC--CCCH-H-HHHHHHHHHHHHcCCCEEEec
Q psy15126 250 EYAMLAFAAQAG--ALDL-K-RALMETLTCLRRGGADVIISY 287 (300)
Q Consensus 250 eY~~~r~Aa~~~--~~n~-~-eal~E~~~~~~r~GAD~Ii~y 287 (300)
.-.-++.|.+.| .+|. . .-+-|.+.-+++.|+-+|+..
T Consensus 217 ~~~v~eaAL~aGAdiINsVs~~~~d~~~~l~a~~g~~vVlm~ 258 (499)
T TIGR00284 217 TLDELYEALKAGASGVIMPDVENAVELASEKKLPEDAFVVVP 258 (499)
T ss_pred CHHHHHHHHHcCCCEEEECCccchhHHHHHHHHcCCeEEEEc
Confidence 666677777654 1221 0 011122222334588777764
No 164
>PRK07226 fructose-bisphosphate aldolase; Provisional
Probab=59.55 E-value=55 Score=30.38 Aligned_cols=32 Identities=22% Similarity=0.290 Sum_probs=24.1
Q ss_pred hhcCCceeeccCcch-HHHHHHHHHhhCCCCCEEeE
Q psy15126 211 VSQGADFLMVKPALP-YLDIISEVKSRHPAYPLFVY 245 (300)
Q Consensus 211 a~~GADivmVkPsmm-~ld~Ir~~~d~~~~vpi~aY 245 (300)
++.|||+| |++.. -++.++++.+.. .+||.+=
T Consensus 170 ~e~GAD~v--Kt~~~~~~~~l~~~~~~~-~ipV~a~ 202 (267)
T PRK07226 170 AELGADIV--KTNYTGDPESFREVVEGC-PVPVVIA 202 (267)
T ss_pred HHHCCCEE--eeCCCCCHHHHHHHHHhC-CCCEEEE
Confidence 57899999 98833 378888888764 5888554
No 165
>cd00953 KDG_aldolase KDG (2-keto-3-deoxygluconate) aldolases found in archaea. This subfamily of enzymes is adapted for high thermostability and shows specificity for non-phosphorylated substrates. The enzyme catalyses the reversible aldol cleavage of 2-keto-3-dexoygluconate to pyruvate and glyceraldehyde, the third step of a modified non-phosphorylated Entner-Doudoroff pathway of glucose oxidation. KDG aldolase shows no significant sequence similarity to microbial 2-keto-3-deoxyphosphogluconate (KDPG) aldolases, and the enzyme shows no activity with glyceraldehyde 3-phosphate as substrate. The enzyme is a tetramer and a member of the DHDPS family of Schiff-base-dependent class I aldolases.
Probab=59.52 E-value=66 Score=30.03 Aligned_cols=59 Identities=22% Similarity=0.379 Sum_probs=36.6
Q ss_pred hhcCCceeeccCc------ch---HHHHHHHHHhhCCCCCEEeEecccccHHHHHHHhCCCCCHHHHHHHHHHHHHHcCC
Q psy15126 211 VSQGADFLMVKPA------LP---YLDIISEVKSRHPAYPLFVYQVSGEYAMLAFAAQAGALDLKRALMETLTCLRRGGA 281 (300)
Q Consensus 211 a~~GADivmVkPs------mm---~ld~Ir~~~d~~~~vpi~aY~vSgeY~~~r~Aa~~~~~n~~eal~E~~~~~~r~GA 281 (300)
++.|+|-|.+.=+ |. +..+++.+.+.. + +|++- | |-.+.++++..+-.. ++.||
T Consensus 30 ~~~Gv~Gl~~~GstGE~~~Lt~eEr~~l~~~~~~~~-~-~vi~g-v-------------g~~~~~~ai~~a~~a-~~~Ga 92 (279)
T cd00953 30 ISKGIDYVFVAGTTGLGPSLSFQEKLELLKAYSDIT-D-KVIFQ-V-------------GSLNLEESIELARAA-KSFGI 92 (279)
T ss_pred HHcCCcEEEEcccCCCcccCCHHHHHHHHHHHHHHc-C-CEEEE-e-------------CcCCHHHHHHHHHHH-HHcCC
Confidence 6899999977533 22 788888877764 3 34322 3 223556665444444 47888
Q ss_pred CEEEe
Q psy15126 282 DVIIS 286 (300)
Q Consensus 282 D~Ii~ 286 (300)
|.||+
T Consensus 93 d~v~v 97 (279)
T cd00953 93 YAIAS 97 (279)
T ss_pred CEEEE
Confidence 88887
No 166
>TIGR00693 thiE thiamine-phosphate pyrophosphorylase. This model includes ThiE from Bacillus subtilis but excludes its paralog, the regulatory protein TenI, and neighbors of TenI.
Probab=59.26 E-value=37 Score=29.18 Aligned_cols=57 Identities=21% Similarity=0.413 Sum_probs=38.2
Q ss_pred hhcCCceeeccCcc---------h--HHHHHHHHHhhCCCCCEEeEecccccHHHHHHHhCCCCCHHHHHHHHHHHHHHc
Q psy15126 211 VSQGADFLMVKPAL---------P--YLDIISEVKSRHPAYPLFVYQVSGEYAMLAFAAQAGALDLKRALMETLTCLRRG 279 (300)
Q Consensus 211 a~~GADivmVkPsm---------m--~ld~Ir~~~d~~~~vpi~aY~vSgeY~~~r~Aa~~~~~n~~eal~E~~~~~~r~ 279 (300)
.+.|||+|++.|-. . -++.++++++.++++||++-. -++. |.+..+++.
T Consensus 113 ~~~g~dyi~~~~v~~t~~k~~~~~~~g~~~l~~~~~~~~~~pv~a~G---------------GI~~-----~~~~~~~~~ 172 (196)
T TIGR00693 113 EAEGADYIGFGPIFPTPTKKDPAPPAGVELLREIAATSIDIPIVAIG---------------GITL-----ENAAEVLAA 172 (196)
T ss_pred hHcCCCEEEECCccCCCCCCCCCCCCCHHHHHHHHHhcCCCCEEEEC---------------CcCH-----HHHHHHHHc
Confidence 46899999864421 1 378888888776679988763 2343 334455567
Q ss_pred CCCEEEec
Q psy15126 280 GADVIISY 287 (300)
Q Consensus 280 GAD~Ii~y 287 (300)
|+|.|.+-
T Consensus 173 G~~gva~~ 180 (196)
T TIGR00693 173 GADGVAVV 180 (196)
T ss_pred CCCEEEEh
Confidence 99988764
No 167
>PRK05692 hydroxymethylglutaryl-CoA lyase; Provisional
Probab=59.13 E-value=43 Score=31.81 Aligned_cols=27 Identities=11% Similarity=-0.022 Sum_probs=22.4
Q ss_pred eecHHhHHHHHHHHHHHHHcCCCcccc
Q psy15126 58 IHYEKTLKRLADISKAFSDAGAHIVAP 84 (300)
Q Consensus 58 i~nd~Tl~~l~~~A~~~A~aGad~vAP 84 (300)
.-...|.+.-.+++..+.++|++.|--
T Consensus 19 ~~~~~s~e~k~~ia~~L~~~Gv~~IEv 45 (287)
T PRK05692 19 EKRFIPTADKIALIDRLSAAGLSYIEV 45 (287)
T ss_pred cCCCcCHHHHHHHHHHHHHcCCCEEEe
Confidence 455678888999999999999998854
No 168
>COG1060 ThiH Thiamine biosynthesis enzyme ThiH and related uncharacterized enzymes [Coenzyme metabolism / General function prediction only]
Probab=59.06 E-value=25 Score=34.96 Aligned_cols=98 Identities=21% Similarity=0.360 Sum_probs=62.0
Q ss_pred cccccC----CCcccchHhHHHHHHHHHhhhcccccCCCCCccccchhhhcCC-ceeecc---Ccc---hHHHHHHHHHh
Q psy15126 167 CAIFNE----DGSIHYEKTLKRLADISKAFSDAVYVPNHNTDRFQARDVSQGA-DFLMVK---PAL---PYLDIISEVKS 235 (300)
Q Consensus 167 cgi~~~----~g~i~nd~tl~~l~~~a~~~a~~~~~~~~n~~~~~~~Da~~GA-DivmVk---Psm---m~ld~Ir~~~d 235 (300)
|+|..+ +++....+-+...++-+ .+.|+ -++||. |.. -|.+.+|.+|+
T Consensus 76 CaF~~~~~~~~~y~Ls~eeI~~~~~~~---------------------~~~G~~Evli~gG~~p~~~~~y~~~~~~~ik~ 134 (370)
T COG1060 76 CAFYRKPGDPKAYTLSPEEILEEVREA---------------------VKRGITEVLIVGGEHPELSLEYYEELFRTIKE 134 (370)
T ss_pred cccccCCCCccccccCHHHHHHHHHHH---------------------HHcCCeEEEEecCcCCCcchHHHHHHHHHHHH
Confidence 666644 55566555555544443 34466 455543 542 28999999999
Q ss_pred hCCCCCEEeEecccccHHHHHHHhCCCCCHHHHHHHHHHHHHHcCCCEEEecchHHHH
Q psy15126 236 RHPAYPLFVYQVSGEYAMLAFAAQAGALDLKRALMETLTCLRRGGADVIISYYTPRVL 293 (300)
Q Consensus 236 ~~~~vpi~aY~vSgeY~~~r~Aa~~~~~n~~eal~E~~~~~~r~GAD~Ii~y~A~~~l 293 (300)
.||++-|-+++. +|+-+ .+..+.... .|.+..+|++|.|.++..-|.-..
T Consensus 135 ~~p~~~i~a~s~-~ei~~---~~~~~~~s~----~E~l~~Lk~aGldsmpg~~aeil~ 184 (370)
T COG1060 135 EFPDLHIHALSA-GEILF---LAREGGLSY----EEVLKRLKEAGLDSMPGGGAEILS 184 (370)
T ss_pred hCcchhhcccCH-HHhHH---HHhccCCCH----HHHHHHHHHcCCCcCcCcceeech
Confidence 999999999853 33333 344444444 566667778999998876654433
No 169
>cd00954 NAL N-Acetylneuraminic acid aldolase, also called N-acetylneuraminate lyase (NAL), which catalyses the reversible aldol reaction of N-acetyl-D-mannosamine and pyruvate to give N-acetyl-D-neuraminic acid (D-sialic acid). It has a widespread application as biocatalyst for the synthesis of sialic acid and its derivatives. This enzyme has been shown to be quite specific for pyruvate as the donor, but flexible to a variety of D- and, to some extent, L-hexoses and pentoses as acceptor substrates. NAL is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases.
Probab=59.01 E-value=25 Score=32.73 Aligned_cols=37 Identities=16% Similarity=0.291 Sum_probs=27.2
Q ss_pred hhcCCceeeccCc-c--h----HHHHHHHHHhhCCCCCEEeEec
Q psy15126 211 VSQGADFLMVKPA-L--P----YLDIISEVKSRHPAYPLFVYQV 247 (300)
Q Consensus 211 a~~GADivmVkPs-m--m----~ld~Ir~~~d~~~~vpi~aY~v 247 (300)
.+.|||.||+-|- - + .++..+++.+..|++||+.|+.
T Consensus 93 ~~~Gad~v~~~~P~y~~~~~~~i~~~~~~v~~a~~~lpi~iYn~ 136 (288)
T cd00954 93 EELGYDAISAITPFYYKFSFEEIKDYYREIIAAAASLPMIIYHI 136 (288)
T ss_pred HHcCCCEEEEeCCCCCCCCHHHHHHHHHHHHHhcCCCCEEEEeC
Confidence 5799999997553 2 1 4566666667665899999987
No 170
>PRK13306 ulaD 3-keto-L-gulonate-6-phosphate decarboxylase; Provisional
Probab=58.78 E-value=40 Score=30.69 Aligned_cols=61 Identities=20% Similarity=0.245 Sum_probs=40.6
Q ss_pred HHHHHHHHhCCCcEEEeeecCCCCCCCCcceeeCCCCceecHHhHHHHHHHHHHHHHcCCCccccCCCCc-chHHHHHHH
Q psy15126 20 QVIPMIRKQFPSLTIACDVCLCGYTSHGHCAIFNEDGSIHYEKTLKRLADISKAFSDAGAHIVAPSDMMD-NRIHAIKQS 98 (300)
Q Consensus 20 ~~i~~ik~~~p~l~i~~Dvclc~yt~hGHcgi~~~~g~i~nd~Tl~~l~~~A~~~A~aGad~vAPSdmMD-grv~air~a 98 (300)
+.|+.||+.||+..|.+|.-+. |. ..|+... ++++|+|++-....-. ..+....++
T Consensus 45 ~~i~~lk~~~~~~~v~~DLK~~-----------Di------~~~v~~~------~~~~Gad~vTvH~~a~~~~i~~~~~~ 101 (216)
T PRK13306 45 KAVRVLRALYPDKIIVADTKIA-----------DA------GKILAKM------AFEAGADWVTVICAAHIPTIKAALKV 101 (216)
T ss_pred HHHHHHHHHCCCCEEEEEEeec-----------CC------cHHHHHH------HHHCCCCEEEEeCCCCHHHHHHHHHH
Confidence 6799999999999999999874 21 1333322 7799999988854322 224555555
Q ss_pred HhhCC
Q psy15126 99 LFTSR 103 (300)
Q Consensus 99 Ld~~g 103 (300)
+...|
T Consensus 102 ~~~~g 106 (216)
T PRK13306 102 AKEFN 106 (216)
T ss_pred HHHcC
Confidence 54445
No 171
>KOG2335|consensus
Probab=58.63 E-value=31 Score=34.72 Aligned_cols=179 Identities=21% Similarity=0.291 Sum_probs=95.2
Q ss_pred ccccCCCCcchHHHHHHHHhhCCCCCCcccccchhhhhcccch---hhhhhhcCCCCCCCcc-eeeCCCCCCceEEEEe-
Q psy15126 81 IVAPSDMMDNRIHAIKQSLFTSRQSSTTGLLSYSAKFCSAFYG---PFREAAGSAPTFGDRS-CYQLPCGSKGLAIRAA- 155 (300)
Q Consensus 81 ~vAPSdmMDgrv~air~aLd~~g~~~~v~ImsysaK~aS~~YG---PfRda~gS~~~~gdr~-~yQ~~~~~~~~ai~~d- 155 (300)
++|| |||-.-.+-|.--...|.. +.|+-=+.|-.|. |.|+--=|.-. +||. +-|+--.++...+.+.
T Consensus 22 i~AP--Mvd~S~l~fR~L~R~y~~~-----l~yTpMi~a~~fv~~ek~r~~~~st~~-~D~PLIvQf~~ndp~~ll~Aa~ 93 (358)
T KOG2335|consen 22 IVAP--MVDYSELAFRRLVRLYGAD-----LLYTPMIHAKTFVHSEKYRDSELSTSP-EDRPLIVQFGGNDPENLLKAAR 93 (358)
T ss_pred ccCC--cccccHHHHHHHHHHhCCc-----eEechHHHHHHHhcCccchhhhcccCC-CCCceEEEEcCCCHHHHHHHHH
Confidence 5555 8888888888877776662 2233333333333 33433322221 4554 6666555554433222
Q ss_pred -----------ecccCCC--CCCccccccCCCcccchHhHHHHHHHHHh-hhc------ccccCCCCCccccchhhhcCC
Q psy15126 156 -----------VCLCGYT--SHGHCAIFNEDGSIHYEKTLKRLADISKA-FSD------AVYVPNHNTDRFQARDVSQGA 215 (300)
Q Consensus 156 -----------vclc~yt--~hGHcgi~~~~g~i~nd~tl~~l~~~a~~-~a~------~~~~~~~n~~~~~~~Da~~GA 215 (300)
-|=||=. -.||=|-+-- +|-+-+..+.+.-.+ ... -++.+++-|-++...=.++|+
T Consensus 94 lv~~y~D~idlNcGCPq~~a~~g~yGa~L~----~~~eLv~e~V~~v~~~l~~pVs~KIRI~~d~~kTvd~ak~~e~aG~ 169 (358)
T KOG2335|consen 94 LVQPYCDGIDLNCGCPQKVAKRGGYGAFLM----DNPELVGEMVSAVRANLNVPVSVKIRIFVDLEKTVDYAKMLEDAGV 169 (358)
T ss_pred HhhhhcCcccccCCCCHHHHhcCCccceec----cCHHHHHHHHHHHHhhcCCCeEEEEEecCcHHHHHHHHHHHHhCCC
Confidence 3555532 2344443321 111111111111000 000 123344444444444478999
Q ss_pred ceeeccCc--------c--hHHHHHHHHHhhCCCCCEEeEecccccHHHHHHHhCCCCCHHHHHHHHHHHHHHcCCCEEE
Q psy15126 216 DFLMVKPA--------L--PYLDIISEVKSRHPAYPLFVYQVSGEYAMLAFAAQAGALDLKRALMETLTCLRRGGADVII 285 (300)
Q Consensus 216 DivmVkPs--------m--m~ld~Ir~~~d~~~~vpi~aY~vSgeY~~~r~Aa~~~~~n~~eal~E~~~~~~r~GAD~Ii 285 (300)
+++.|-=- . .-.+.|+.+++.++++|+++=. -+ ..+.|...+++.-|||-||
T Consensus 170 ~~ltVHGRtr~~kg~~~~pad~~~i~~v~~~~~~ipviaNG---------------nI---~~~~d~~~~~~~tG~dGVM 231 (358)
T KOG2335|consen 170 SLLTVHGRTREQKGLKTGPADWEAIKAVRENVPDIPVIANG---------------NI---LSLEDVERCLKYTGADGVM 231 (358)
T ss_pred cEEEEecccHHhcCCCCCCcCHHHHHHHHHhCcCCcEEeeC---------------Cc---CcHHHHHHHHHHhCCceEE
Confidence 99988321 1 1578999999999889999752 12 2457888899779999999
Q ss_pred ecch
Q psy15126 286 SYYT 289 (300)
Q Consensus 286 ~y~A 289 (300)
+--+
T Consensus 232 ~arg 235 (358)
T KOG2335|consen 232 SARG 235 (358)
T ss_pred ecch
Confidence 8543
No 172
>PRK09234 fbiC FO synthase; Reviewed
Probab=58.23 E-value=43 Score=36.88 Aligned_cols=80 Identities=34% Similarity=0.440 Sum_probs=53.2
Q ss_pred HhHHHHHHHHHhhhcccccCCCCCccccchhhhcCC-ceeecc---Ccch---HHHHHHHHHhhCCCCCEEeEecccccH
Q psy15126 180 KTLKRLADISKAFSDAVYVPNHNTDRFQARDVSQGA-DFLMVK---PALP---YLDIISEVKSRHPAYPLFVYQVSGEYA 252 (300)
Q Consensus 180 ~tl~~l~~~a~~~a~~~~~~~~n~~~~~~~Da~~GA-DivmVk---Psmm---~ld~Ir~~~d~~~~vpi~aY~vSgeY~ 252 (300)
-|.+.+.+.+... .+.|+ .+.||. |... |++++|.+|+++|++.|-+|+. -|.-
T Consensus 557 Ls~eeI~~~a~ea------------------~~~G~tev~i~gG~~p~~~~~~y~~lir~IK~~~p~i~i~afsp-~Ei~ 617 (843)
T PRK09234 557 LSLDEVADRAWEA------------------WVAGATEVCMQGGIHPELPGTGYADLVRAVKARVPSMHVHAFSP-MEIV 617 (843)
T ss_pred CCHHHHHHHHHHH------------------HHCCCCEEEEecCCCCCcCHHHHHHHHHHHHHhCCCeeEEecCh-HHHH
Confidence 4666666666553 46777 455552 3221 8999999999999999999953 1221
Q ss_pred HHHHHHhCCCCCHHHHHHHHHHHHHHcCCCEEE
Q psy15126 253 MLAFAAQAGALDLKRALMETLTCLRRGGADVII 285 (300)
Q Consensus 253 ~~r~Aa~~~~~n~~eal~E~~~~~~r~GAD~Ii 285 (300)
..+...|.. ..|.+..+|++|.|-+-
T Consensus 618 --~~a~~~Gl~-----~~e~l~~LkeAGLds~p 643 (843)
T PRK09234 618 --NGAARLGLS-----IREWLTALREAGLDTIP 643 (843)
T ss_pred --HHHHHcCCC-----HHHHHHHHHHhCcCccC
Confidence 123345552 35888899999999773
No 173
>PRK10840 transcriptional regulator RcsB; Provisional
Probab=57.88 E-value=63 Score=27.66 Aligned_cols=65 Identities=17% Similarity=0.261 Sum_probs=44.1
Q ss_pred cCCceeeccCcc------hHHHHHHHHHhhCCCCCEEeEecccccHHHHHHHhCCCC------CHHHHHHHHHHHHH
Q psy15126 213 QGADFLMVKPAL------PYLDIISEVKSRHPAYPLFVYQVSGEYAMLAFAAQAGAL------DLKRALMETLTCLR 277 (300)
Q Consensus 213 ~GADivmVkPsm------m~ld~Ir~~~d~~~~vpi~aY~vSgeY~~~r~Aa~~~~~------n~~eal~E~~~~~~ 277 (300)
...|+|++--.+ .-++.+++++..+|.+||..++........+.+.+.|.. ...+.+.+++..+.
T Consensus 48 ~~~DlvllD~~l~~~~~~~g~~~~~~l~~~~~~~~iIvls~~~~~~~~~~a~~~Ga~~yl~K~~~~~~l~~ai~~v~ 124 (216)
T PRK10840 48 LDAHVLITDLSMPGDKYGDGITLIKYIKRHFPSLSIIVLTMNNNPAILSAVLDLDIEGIVLKQGAPTDLPKALAALQ 124 (216)
T ss_pred CCCCEEEEeCcCCCCCCCCHHHHHHHHHHHCCCCcEEEEEecCCHHHHHHHHHCCCeEEEECCCCHHHHHHHHHHHH
Confidence 347888776433 257888888877889999999776666666777776532 11355666666663
No 174
>PRK09490 metH B12-dependent methionine synthase; Provisional
Probab=57.64 E-value=38 Score=38.87 Aligned_cols=230 Identities=14% Similarity=0.130 Sum_probs=119.4
Q ss_pred cEEEeeecCCCCCCCCc--ceeeC-CCCceecHHhHHHHHHHHHHHHHcCCCccccCCCCcch-----HHHHHHHHhhCC
Q psy15126 32 LTIACDVCLCGYTSHGH--CAIFN-EDGSIHYEKTLKRLADISKAFSDAGAHIVAPSDMMDNR-----IHAIKQSLFTSR 103 (300)
Q Consensus 32 l~i~~Dvclc~yt~hGH--cgi~~-~~g~i~nd~Tl~~l~~~A~~~A~aGad~vAPSdmMDgr-----v~air~aLd~~g 103 (300)
..|+.++ .||+.... -++-+ .-+.+..+.=.+...+|+..+.++|+|++..-.|.|-. +.++++.+.+.|
T Consensus 130 ~~VAGSI--GP~g~~~sl~p~~e~pg~~~it~del~~~y~eQi~~L~e~GVDllliETi~d~~EakAal~a~~~~~~~~~ 207 (1229)
T PRK09490 130 RFVAGVL--GPTNRTASISPDVNDPGFRNVTFDELVAAYREQTRGLIEGGADLILIETIFDTLNAKAAIFAVEEVFEELG 207 (1229)
T ss_pred eEEEEec--CCCCcccccCCCcccccccCCCHHHHHHHHHHHHHHHHhCCCCEEEEeeeCCHHHHHHHHHHHHHHHhhcC
Confidence 6777774 56664332 11111 01246777888888889999999999999998888753 333444443444
Q ss_pred CCCCcccc-cchhh--hhcccch-hhhhhhcCCCCCCCcceeeCCCCC-CceE---EE--EeecccCCCCCCccccccCC
Q psy15126 104 QSSTTGLL-SYSAK--FCSAFYG-PFREAAGSAPTFGDRSCYQLPCGS-KGLA---IR--AAVCLCGYTSHGHCAIFNED 173 (300)
Q Consensus 104 ~~~~v~Im-sysaK--~aS~~YG-PfRda~gS~~~~gdr~~yQ~~~~~-~~~a---i~--~dvclc~yt~hGHcgi~~~~ 173 (300)
. +++|| |.+.. --..+-| +...++.+--..+ --.+-+++.. |+.. |+ ...+-++..-+---|.-+..
T Consensus 208 ~--~lPv~vS~T~~d~~Gr~lsG~~~ea~~~~l~~~~-~~avGlNCs~GP~~m~~~l~~l~~~~~~pi~vyPNAGlP~~~ 284 (1229)
T PRK09490 208 V--RLPVMISGTITDASGRTLSGQTTEAFWNSLRHAK-PLSIGLNCALGADELRPYVEELSRIADTYVSAHPNAGLPNAF 284 (1229)
T ss_pred C--CCeEEEEEEEECCCCccCCCCcHHHHHHHHhcCC-CCEEEEcCCCcHHHHHHHHHHHHHhcCCeEEEEeCCCCCCCC
Confidence 3 34444 44331 1134555 4433332211111 0123333331 1100 00 00111222222222333322
Q ss_pred CcccchHhHHHHHHHHHhhhcccccCCCCCccccchhhhcC-CceeeccCc-ch-HHHHHHHHHhhC-C-CCCEEeEe-c
Q psy15126 174 GSIHYEKTLKRLADISKAFSDAVYVPNHNTDRFQARDVSQG-ADFLMVKPA-LP-YLDIISEVKSRH-P-AYPLFVYQ-V 247 (300)
Q Consensus 174 g~i~nd~tl~~l~~~a~~~a~~~~~~~~n~~~~~~~Da~~G-ADivmVkPs-mm-~ld~Ir~~~d~~-~-~vpi~aY~-v 247 (300)
+ .+|.|-+.+++....+ ++.| +.||==+=+ .| ++..|++.++.. | ..|...-. +
T Consensus 285 ~--~yd~tPe~~a~~~~~~------------------~~~G~v~IIGGCCGTtPeHI~ala~~l~~~~p~~~~~~~~~~~ 344 (1229)
T PRK09490 285 G--EYDETPEEMAAQIGEF------------------AESGFLNIVGGCCGTTPEHIAAIAEAVAGLPPRKLPEIPVACR 344 (1229)
T ss_pred C--CCCCCHHHHHHHHHHH------------------HHcCCCCEEEecCCCCHHHHHHHHHHHhcCCCCCCCCcCccee
Confidence 3 4667778888888887 6889 899822222 23 899999987652 1 11111011 1
Q ss_pred cccc-----------------------HHHHHHHhCCCCCHHHHHHHHHHHHHHcCCCEEEecch
Q psy15126 248 SGEY-----------------------AMLAFAAQAGALDLKRALMETLTCLRRGGADVIISYYT 289 (300)
Q Consensus 248 SgeY-----------------------~~~r~Aa~~~~~n~~eal~E~~~~~~r~GAD~Ii~y~A 289 (300)
++-+ .-||.+.+. -|.++++..+...+ ++|||+|=+-++
T Consensus 345 ~S~~~~~~~~~~~~~~~IGER~N~~G~k~~~~~i~~--~d~~~al~~A~~qv-e~GA~iIDVn~g 406 (1229)
T PRK09490 345 LSGLEPLNIDDDSLFVNVGERTNVTGSAKFARLIKE--EDYDEALDVARQQV-ENGAQIIDINMD 406 (1229)
T ss_pred eecceEEeecCCCcccccccccchhccHHHHHHHHc--CCHHHHHHHHHHHH-HCCCCEEEECCC
Confidence 1111 334444444 36677777777777 799999977664
No 175
>TIGR00875 fsa_talC_mipB fructose-6-phosphate aldolase, TalC/MipB family. This model represents a family that includes the E. coli transaldolase homologs TalC and MipB, both shown to be fructose-6-phosphate aldolases rather than transaldolases as previously thought. It is related to but distinct from the transaldolase family of E. coli TalA and TalB. The member from Bacillus subtilis becomes phosphorylated during early stationary phase but not during exponential growth.
Probab=57.05 E-value=14 Score=33.90 Aligned_cols=92 Identities=23% Similarity=0.261 Sum_probs=55.7
Q ss_pred CCCCCChHHHHHHHHHHhCCCcEEEeeecCCCCCCCCccee--eCCCCceecHHhHHHHHHHHHHHHHcCCCcccc-C--
Q psy15126 11 ADTPDNPLFQVIPMIRKQFPSLTIACDVCLCGYTSHGHCAI--FNEDGSIHYEKTLKRLADISKAFSDAGAHIVAP-S-- 85 (300)
Q Consensus 11 a~~~~~~~~~~i~~ik~~~p~l~i~~Dvclc~yt~hGHcgi--~~~~g~i~nd~Tl~~l~~~A~~~A~aGad~vAP-S-- 85 (300)
+.+.++.+.+|-+ |.+.+|+++| =-|-|..|--.+ +...| |.--.|.---++||+..+++||+.|+| .
T Consensus 60 ~~~~~~mi~~a~~-l~~~~~~i~i-----KIP~T~~Gl~A~~~L~~~G-i~v~~T~vfs~~Qa~~Aa~aGa~yispyvgR 132 (213)
T TIGR00875 60 SLDAEGMVEEAKE-LAKLAPNIVV-----KIPMTSEGLKAVKILKKEG-IKTNVTLVFSAAQALLAAKAGATYVSPFVGR 132 (213)
T ss_pred eCCHHHHHHHHHH-HHHhCCCeEE-----EeCCCHHHHHHHHHHHHCC-CceeEEEecCHHHHHHHHHcCCCEEEeecch
Confidence 3456667777655 5667788665 237776663222 22223 222233334467999999999999999 1
Q ss_pred --CC-Ccc--hHHHHHHHHhhCCCCCCcccc
Q psy15126 86 --DM-MDN--RIHAIKQSLFTSRQSSTTGLL 111 (300)
Q Consensus 86 --dm-MDg--rv~air~aLd~~g~~~~v~Im 111 (300)
+. -|| .+..+++.++..|+ ++-||
T Consensus 133 i~d~g~dg~~~v~~~~~~~~~~~~--~tkIl 161 (213)
T TIGR00875 133 LDDIGGDGMKLIEEVKTIFENHAP--DTEVI 161 (213)
T ss_pred HHHcCCCHHHHHHHHHHHHHHcCC--CCEEE
Confidence 11 122 46677777877777 35576
No 176
>PF09370 TIM-br_sig_trns: TIM-barrel signal transduction protein; InterPro: IPR009215 Members of this family are predicted to have a TIM barrel fold, based on PSI-BLAST analysis (iteration 4) and on SCOP prediction (using SMART). Interestingly, this novel domain also exists as an N-terminal domain of sigma54-dependent transcriptional activators (enhancer-binding proteins). Because sigma54 dependent activators typically have a three-domain structure: the variable N-terminal regulatory (activation) domain involved in signal recognition/receiving, the central AAA-type ATPase domain, and the DNA-binding domain (see PIRSF003187 from PIRSF, PIRSF005263 from PIRSF, PIRSF003184 from PIRSF, PIRSF005263 from PIRSF, IPR014443 from INTERPRO for details), the proteins of the current entry may be predicted to play a role in signal recognition/receiving and signal transduction.; PDB: 2P10_C.
Probab=56.91 E-value=17 Score=35.16 Aligned_cols=67 Identities=18% Similarity=0.207 Sum_probs=42.7
Q ss_pred hhcCCceeeccCcc-hHHHHHHHHHhhCCCCCEEeEecccccHHHHHHHhCC------CCCHHHHHHHHHHHHHHcCCCE
Q psy15126 211 VSQGADFLMVKPAL-PYLDIISEVKSRHPAYPLFVYQVSGEYAMLAFAAQAG------ALDLKRALMETLTCLRRGGADV 283 (300)
Q Consensus 211 a~~GADivmVkPsm-m~ld~Ir~~~d~~~~vpi~aY~vSgeY~~~r~Aa~~~------~~n~~eal~E~~~~~~r~GAD~ 283 (300)
-+.|---|.==|.. ..-+..|+.+++.- |.| .-|.-|+|.|.++| ..|.+||. .+.++|||+
T Consensus 105 k~~Gf~GV~NfPTvgliDG~fR~~LEe~G----mgy--~~EVemi~~A~~~gl~T~~yvf~~e~A~-----~M~~AGaDi 173 (268)
T PF09370_consen 105 KELGFSGVQNFPTVGLIDGQFRQNLEETG----MGY--DREVEMIRKAHEKGLFTTAYVFNEEQAR-----AMAEAGADI 173 (268)
T ss_dssp HHHT-SEEEE-S-GGG--HHHHHHHHHTT------H--HHHHHHHHHHHHTT-EE--EE-SHHHHH-----HHHHHT-SE
T ss_pred HHhCCceEEECCcceeeccHHHHHHHhcC----CCH--HHHHHHHHHHHHCCCeeeeeecCHHHHH-----HHHHcCCCE
Confidence 45666666556874 46677899998842 567 56999999999988 45776653 444799999
Q ss_pred EEecc
Q psy15126 284 IISYY 288 (300)
Q Consensus 284 Ii~y~ 288 (300)
|..+.
T Consensus 174 iv~H~ 178 (268)
T PF09370_consen 174 IVAHM 178 (268)
T ss_dssp EEEE-
T ss_pred EEecC
Confidence 99877
No 177
>PRK06354 pyruvate kinase; Provisional
Probab=56.36 E-value=1.7e+02 Score=31.06 Aligned_cols=80 Identities=16% Similarity=0.207 Sum_probs=48.6
Q ss_pred cccchHhHHHHHHHHHhhhcccccCCCCCccccchhhhcCCceeeccCcch------------HHHHHHHHHhhCCCCCE
Q psy15126 175 SIHYEKTLKRLADISKAFSDAVYVPNHNTDRFQARDVSQGADFLMVKPALP------------YLDIISEVKSRHPAYPL 242 (300)
Q Consensus 175 ~i~nd~tl~~l~~~a~~~a~~~~~~~~n~~~~~~~Da~~GADivmVkPsmm------------~ld~Ir~~~d~~~~vpi 242 (300)
+|++-+-|+.|-+| ++. +|.|||+|+.. +-.+|+..++. ..|+
T Consensus 226 KIEt~eav~nldeI----------------------~~~-~DgImVaRGDLgve~g~e~v~~~qk~ii~~~~~~--gkpv 280 (590)
T PRK06354 226 KIEKQEAIDNIDAI----------------------LEL-CDGLMVARGDLGVEIPAEEVPLLQKRLIKKANRL--GKPV 280 (590)
T ss_pred EECCHHHHHhHHHH----------------------HHh-cCEEEEccchhhcccCcHHHHHHHHHHHHHHHHc--CCCE
Confidence 36667777777776 344 99999999832 33445555543 4565
Q ss_pred E-eEecccccHHHHHHHhCCCCCHHHHHHHHHHHHHHcCCCEEEec
Q psy15126 243 F-VYQVSGEYAMLAFAAQAGALDLKRALMETLTCLRRGGADVIISY 287 (300)
Q Consensus 243 ~-aY~vSgeY~~~r~Aa~~~~~n~~eal~E~~~~~~r~GAD~Ii~y 287 (300)
+ |=|. .=+| -.++...|.=+-.+...+ .-|+|.||..
T Consensus 281 I~ATqm--LeSM-----~~~p~PTRAEvsDVaNav-~DG~DavMLS 318 (590)
T PRK06354 281 ITATQM--LDSM-----QRNPRPTRAEASDVANAI-LDGTDAVMLS 318 (590)
T ss_pred EEEchh--HHHH-----hhCCCCCchhhHHHHHHh-hhCCcEEEec
Confidence 5 4444 1111 224555555556666677 5899999874
No 178
>TIGR01496 DHPS dihydropteroate synthase. This model represents dihydropteroate synthase, the enzyme that catalyzes the second to last step in folic acid biosynthesis. The gene is usually designated folP (folic acid biosynthsis) or sul (sulfanilamide resistance). This model represents one branch of the family of pterin-binding enzymes (pfam00809) and of a cluster of dihydropteroate synthase and related enzymes (COG0294). Other members of pfam00809 and COG0294 are represented by TIGR00284.
Probab=56.28 E-value=60 Score=30.37 Aligned_cols=73 Identities=18% Similarity=0.246 Sum_probs=45.8
Q ss_pred hhcCCceeecc-----Ccch----------HHHHHHHHHhhCCCCCEEeEecccccHHHHHHHhCC--CCCH---HHHHH
Q psy15126 211 VSQGADFLMVK-----PALP----------YLDIISEVKSRHPAYPLFVYQVSGEYAMLAFAAQAG--ALDL---KRALM 270 (300)
Q Consensus 211 a~~GADivmVk-----Psmm----------~ld~Ir~~~d~~~~vpi~aY~vSgeY~~~r~Aa~~~--~~n~---~eal~ 270 (300)
+++|||+|=|. |... -..+|+.+++.+ ++||..= |....-++.|.+.| ++|. .+ .-
T Consensus 33 ~~~GA~iIDIG~~st~p~~~~i~~~~E~~rl~~~v~~~~~~~-~~plsiD--T~~~~vi~~al~~G~~iINsis~~~-~~ 108 (257)
T TIGR01496 33 LEEGADIIDVGGESTRPGADRVSPEEELNRVVPVIKALRDQP-DVPISVD--TYRAEVARAALEAGADIINDVSGGQ-DP 108 (257)
T ss_pred HHCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcC-CCeEEEe--CCCHHHHHHHHHcCCCEEEECCCCC-Cc
Confidence 89999999885 4321 234555555554 7998766 66778888888764 2221 11 12
Q ss_pred HHHHHHHHcCCCEEEec
Q psy15126 271 ETLTCLRRGGADVIISY 287 (300)
Q Consensus 271 E~~~~~~r~GAD~Ii~y 287 (300)
|.+.-+++.|+.+|+..
T Consensus 109 ~~~~l~~~~~~~vV~m~ 125 (257)
T TIGR01496 109 AMLEVAAEYGVPLVLMH 125 (257)
T ss_pred hhHHHHHHcCCcEEEEe
Confidence 33333556799998865
No 179
>COG2513 PrpB PEP phosphonomutase and related enzymes [Carbohydrate transport and metabolism]
Probab=55.95 E-value=19 Score=35.19 Aligned_cols=78 Identities=23% Similarity=0.297 Sum_probs=45.2
Q ss_pred ccccccCCCcccchHhHHHHHHHHHhhhcccccCCCCCccccch-----------hhhcCCceeeccCcchHHHHHHHHH
Q psy15126 166 HCAIFNEDGSIHYEKTLKRLADISKAFSDAVYVPNHNTDRFQAR-----------DVSQGADFLMVKPALPYLDIISEVK 234 (300)
Q Consensus 166 Hcgi~~~~g~i~nd~tl~~l~~~a~~~a~~~~~~~~n~~~~~~~-----------Da~~GADivmVkPsmm~ld~Ir~~~ 234 (300)
-||-++..+-++-|+.++++.-+.-.--+.-+|=+--||-+..- =+++|||+| -.|++.-.+.||+..
T Consensus 120 ~cgh~~gk~l~~~~e~v~rIkAa~~a~~~~~fvi~ARTda~~~~~ld~AI~Ra~AY~eAGAD~i-f~~al~~~e~i~~f~ 198 (289)
T COG2513 120 RCGHLPGKELVSIDEMVDRIKAAVEARRDPDFVIIARTDALLVEGLDDAIERAQAYVEAGADAI-FPEALTDLEEIRAFA 198 (289)
T ss_pred hcCCCCCCCcCCHHHHHHHHHHHHHhccCCCeEEEeehHHHHhccHHHHHHHHHHHHHcCCcEE-ccccCCCHHHHHHHH
Confidence 35556555667777777776544322211122222222222111 168999998 456777899999999
Q ss_pred hhCCCCCEEeE
Q psy15126 235 SRHPAYPLFVY 245 (300)
Q Consensus 235 d~~~~vpi~aY 245 (300)
+..+ +|+.+=
T Consensus 199 ~av~-~pl~~N 208 (289)
T COG2513 199 EAVP-VPLPAN 208 (289)
T ss_pred HhcC-CCeeeE
Confidence 8863 777654
No 180
>cd00377 ICL_PEPM Members of the ICL/PEPM enzyme family catalyze either P-C or C-C bond formation/cleavage. Known members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), and 2-methylisocitrate lyase (MICL). Isocitrate lyase (ICL) catalyzes the conversion of isocitrate to succinate and glyoxylate, the first committed step in the glyoxylate pathway. This carbon-conserving pathway is present in most prokaryotes, lower eukaryotes and plants, but has not been observed in vertebrates. PEP mutase (PEPM) turns phosphoenolpyruvate (PEP) into phosphonopyruvate (P-pyr), an important intermediate in the formation of organophosphonates, which function as antibiotics or play a role in pathogenesis or signaling. P-pyr can be hydrolyzed by phosphonopyruvate hydrolase (PPH) to from pyruvate and phosphate. Oxaloacetate acetylhydrolase (OAH) catalyzes the hydrolytic cleavage of oxaloacetate to
Probab=55.88 E-value=69 Score=29.61 Aligned_cols=106 Identities=20% Similarity=0.254 Sum_probs=55.5
Q ss_pred CcccchHhHHHHHHHHHhhhcccccCCC-------CCccccchhhhcCCceeec--------c------Ccch---HHHH
Q psy15126 174 GSIHYEKTLKRLADISKAFSDAVYVPNH-------NTDRFQARDVSQGADFLMV--------K------PALP---YLDI 229 (300)
Q Consensus 174 g~i~nd~tl~~l~~~a~~~a~~~~~~~~-------n~~~~~~~Da~~GADivmV--------k------Psmm---~ld~ 229 (300)
+.+..++.+.....++...---|-+|.. |+.+.+.+=+++|++.|.+ . +-++ ++..
T Consensus 50 ~~~~~~e~~~~~~~I~~~~~~Pv~~D~~~G~g~~~~~~~~v~~~~~~G~~gv~iED~~~~k~~g~~~~~~~~~~ee~~~k 129 (243)
T cd00377 50 GLLTLDEVLAAVRRIARAVDLPVIADADTGYGNALNVARTVRELEEAGAAGIHIEDQVGPKKCGHHGGKVLVPIEEFVAK 129 (243)
T ss_pred CcCCHHHHHHHHHHHHhhccCCEEEEcCCCCCCHHHHHHHHHHHHHcCCEEEEEecCCCCccccCCCCCeecCHHHHHHH
Confidence 3444556655555554443111111111 2333344556799999977 1 2222 6777
Q ss_pred HHHHHhhC---CCCCEEeEecccccHHHHHHHhCCCCCHHHHHHHHHHHHHHcCCCEEEecch
Q psy15126 230 ISEVKSRH---PAYPLFVYQVSGEYAMLAFAAQAGALDLKRALMETLTCLRRGGADVIISYYT 289 (300)
Q Consensus 230 Ir~~~d~~---~~vpi~aY~vSgeY~~~r~Aa~~~~~n~~eal~E~~~~~~r~GAD~Ii~y~A 289 (300)
|+.+++.. ++++|.+=.=+ ...+....+|++ |-.+...++|||+|++-+.
T Consensus 130 i~aa~~a~~~~~~~~IiARTDa---------~~~~~~~~~eai-~Ra~ay~~AGAD~v~v~~~ 182 (243)
T cd00377 130 IKAARDARDDLPDFVIIARTDA---------LLAGEEGLDEAI-ERAKAYAEAGADGIFVEGL 182 (243)
T ss_pred HHHHHHHHhccCCeEEEEEcCc---------hhccCCCHHHHH-HHHHHHHHcCCCEEEeCCC
Confidence 77776652 35677664211 011112345554 4444555899999998653
No 181
>TIGR02082 metH 5-methyltetrahydrofolate--homocysteine methyltransferase. S-methyltransferase (MetE, EC 2.1.1.14, the cobalamin-independent methionine synthase) and betaine-homocysteine methyltransferase.
Probab=55.82 E-value=3.8e+02 Score=31.02 Aligned_cols=71 Identities=11% Similarity=0.163 Sum_probs=45.8
Q ss_pred HHHHHHHHHhCC--------CcEEEeeecCCCCCCCCcce--eeCC-CCceecHHhHHHHHHHHHHHHHcCCCccccCCC
Q psy15126 19 FQVIPMIRKQFP--------SLTIACDVCLCGYTSHGHCA--IFNE-DGSIHYEKTLKRLADISKAFSDAGAHIVAPSDM 87 (300)
Q Consensus 19 ~~~i~~ik~~~p--------~l~i~~Dvclc~yt~hGHcg--i~~~-~g~i~nd~Tl~~l~~~A~~~A~aGad~vAPSdm 87 (300)
.++++.-|+... ...|+.++ .||+..-..| .-+. -+.+..+.-.+...+|+..+.++|+|++..-.|
T Consensus 93 ~~av~lAr~Aa~~~~~~~~~~~~VAGsI--GP~g~~~~lgp~~~~~~~~~~t~del~~~y~eq~~~L~~~GvD~iliETi 170 (1178)
T TIGR02082 93 FKGAKLARAVADEFTLTPEKPRFVAGSM--GPTNKTATLSPDVERPGFRNVTYDELVDAYTEQAKGLLDGGVDLLLIETC 170 (1178)
T ss_pred HHHHHHHHHHHHhhcccCCCceEEEEEe--CCCCCCccCCCccccCccCCCCHHHHHHHHHHHHHHHHhCCCCEEEEecc
Confidence 355665555432 36788775 4665332111 1110 024667777888888999999999999999888
Q ss_pred Ccch
Q psy15126 88 MDNR 91 (300)
Q Consensus 88 MDgr 91 (300)
.|-.
T Consensus 171 ~d~~ 174 (1178)
T TIGR02082 171 FDTL 174 (1178)
T ss_pred CCHH
Confidence 8754
No 182
>cd07938 DRE_TIM_HMGL 3-hydroxy-3-methylglutaryl-CoA lyase, catalytic TIM barrel domain. 3-hydroxy-3-methylglutaryl-CoA lyase (HMGL) catalyzes the cleavage of HMG-CoA to acetyl-CoA and acetoacetate, one of the terminal steps in ketone body generation and leucine degradation, and is a key enzyme in the pathway that supplies metabolic fuel to extrahepatic tissues. Mutations in HMGL cause a human autosomal recessive disorder called primary metabolic aciduria that affects ketogenesis and leucine catabolism and can be fatal due to an inability to tolerate hypoglycemia. HMGL has a TIM barrel domain with a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. The cleavage of HMG-CoA requires the presence of a divalent cation like Mg2+ or Mn2+, and the reaction is thought to involve general acid/base catalysis. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropy
Probab=55.74 E-value=64 Score=30.36 Aligned_cols=27 Identities=15% Similarity=0.059 Sum_probs=21.5
Q ss_pred eecHHhHHHHHHHHHHHHHcCCCcccc
Q psy15126 58 IHYEKTLKRLADISKAFSDAGAHIVAP 84 (300)
Q Consensus 58 i~nd~Tl~~l~~~A~~~A~aGad~vAP 84 (300)
.....|.++-.+++..+.++|++.|-.
T Consensus 13 ~~~~~s~e~K~~i~~~L~~~Gv~~IEv 39 (274)
T cd07938 13 EKTFIPTEDKIELIDALSAAGLRRIEV 39 (274)
T ss_pred CCCCcCHHHHHHHHHHHHHcCCCEEEe
Confidence 456678888888888899999988744
No 183
>KOG0369|consensus
Probab=55.39 E-value=1.3e+02 Score=33.68 Aligned_cols=157 Identities=25% Similarity=0.381 Sum_probs=92.7
Q ss_pred cCCCCCCCCcceeeC-C-CCceecHHhHHHH--------HH-------HHHHHHHcCCCccccCCCCcchHHHHHHHHhh
Q psy15126 39 CLCGYTSHGHCAIFN-E-DGSIHYEKTLKRL--------AD-------ISKAFSDAGAHIVAPSDMMDNRIHAIKQSLFT 101 (300)
Q Consensus 39 clc~yt~hGHcgi~~-~-~g~i~nd~Tl~~l--------~~-------~A~~~A~aGad~vAPSdmMDgrv~air~aLd~ 101 (300)
.+.||++|--.|++. | =|--..|.+..-| -+ +-...---||..++=|.-.|+.|-..-+.-..
T Consensus 586 ~IaPyvah~f~~lfslE~WGGATFDVamRFLhEcPWeRL~~lRkliPNIPFQmLLRGANavgYssyPDNviykFce~Ak~ 665 (1176)
T KOG0369|consen 586 KIAPYVAHAFAGLFSLENWGGATFDVAMRFLHECPWERLRELRKLIPNIPFQMLLRGANAVGYSSYPDNVIYKFCEQAKK 665 (1176)
T ss_pred hcchHHHHHhhhhhhhhhcCCchhhHHHHHHhcChHHHHHHHHHhCCCCcHHHHhcccccccccCCChhHHHHHHHHHHh
Confidence 578999999999985 2 2434445444333 22 12223346999999999999999999988888
Q ss_pred CCCCCCcccccchhhhhcccchhh----hhhhcCCCCCCCcceeeCCCCCCceEEEEeecccCCCCCCccccccCCCccc
Q psy15126 102 SRQSSTTGLLSYSAKFCSAFYGPF----REAAGSAPTFGDRSCYQLPCGSKGLAIRAAVCLCGYTSHGHCAIFNEDGSIH 177 (300)
Q Consensus 102 ~g~~~~v~ImsysaK~aS~~YGPf----Rda~gS~~~~gdr~~yQ~~~~~~~~ai~~dvclc~yt~hGHcgi~~~~g~i~ 177 (300)
+|. .-.- -|-|.=|=|- -+|+|++.. .+.+.+| ||.. ++|. ++
T Consensus 666 nGm-DiFR------VFDsLN~lpnl~lGmeAagkAGG----------------VVEAai~---YtGD----v~dp-~r-- 712 (1176)
T KOG0369|consen 666 NGM-DIFR------VFDSLNYLPNLLLGMEAAGKAGG----------------VVEAAIC---YTGD----VLDP-SR-- 712 (1176)
T ss_pred cCc-ceee------ehhhhhhhhhhhhhHhhhhccCC----------------eEEEEEe---eccc----cCCc-cc--
Confidence 988 2111 2455555553 456665543 2333433 3221 1111 00
Q ss_pred chHhHHHHHHHHHhhhcccccCCCCCccccchhhhcCCceeecc-------CcchHHHHHHHHHhhCCCCCEEeEec
Q psy15126 178 YEKTLKRLADISKAFSDAVYVPNHNTDRFQARDVSQGADFLMVK-------PALPYLDIISEVKSRHPAYPLFVYQV 247 (300)
Q Consensus 178 nd~tl~~l~~~a~~~a~~~~~~~~n~~~~~~~Da~~GADivmVk-------Psmm~ld~Ir~~~d~~~~vpi~aY~v 247 (300)
..-.|++....+-.. +++|.+|+-+| |....| .|..++++||++||-...-
T Consensus 713 tKY~L~YY~nlad~l------------------V~agtHiL~IKDMAG~lKP~aa~l-Li~alRdk~PdlPiHvHtH 770 (1176)
T KOG0369|consen 713 TKYNLDYYLNLADKL------------------VKAGTHILGIKDMAGVLKPEAAKL-LIGALRDKFPDLPIHVHTH 770 (1176)
T ss_pred ccccHHHHHHHHHHH------------------HhccCeEEeehhhhcccCHHHHHH-HHHHHHhhCCCCceEEecc
Confidence 011255555554444 78999988544 432222 4566678999999998864
No 184
>PRK10816 DNA-binding transcriptional regulator PhoP; Provisional
Probab=55.31 E-value=1.2e+02 Score=25.29 Aligned_cols=49 Identities=20% Similarity=0.270 Sum_probs=31.7
Q ss_pred hcCCceeeccCcch---HHHHHHHHHhhCCCCCEEeEecccccHHHHHHHhC
Q psy15126 212 SQGADFLMVKPALP---YLDIISEVKSRHPAYPLFVYQVSGEYAMLAFAAQA 260 (300)
Q Consensus 212 ~~GADivmVkPsmm---~ld~Ir~~~d~~~~vpi~aY~vSgeY~~~r~Aa~~ 260 (300)
+...|+|++-..++ -++.++++++..+++|++..+......-...+.+.
T Consensus 42 ~~~~dlvild~~l~~~~g~~l~~~lr~~~~~~pii~ls~~~~~~~~~~~l~~ 93 (223)
T PRK10816 42 EHLPDIAIVDLGLPDEDGLSLIRRWRSNDVSLPILVLTARESWQDKVEVLSA 93 (223)
T ss_pred hCCCCEEEEECCCCCCCHHHHHHHHHhcCCCCCEEEEEcCCCHHHHHHHHHc
Confidence 34568888875543 67888888877678999988653333333333333
No 185
>PRK05458 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=54.38 E-value=19 Score=35.29 Aligned_cols=50 Identities=18% Similarity=0.398 Sum_probs=35.5
Q ss_pred CChHHHHHHHHHHhCCCcEEEe-eecCCCCCCCCcceeeCCCCceecHHhHHHHHHHHHHHHHcCCCccccCCCCcchH
Q psy15126 15 DNPLFQVIPMIRKQFPSLTIAC-DVCLCGYTSHGHCAIFNEDGSIHYEKTLKRLADISKAFSDAGAHIVAPSDMMDNRI 92 (300)
Q Consensus 15 ~~~~~~~i~~ik~~~p~l~i~~-Dvclc~yt~hGHcgi~~~~g~i~nd~Tl~~l~~~A~~~A~aGad~vAPSdmMDgrv 92 (300)
.+.+++.|+.||+++|++.|++ +|. | .+.|+.+.++|+|++- ...-.||+
T Consensus 124 ~~~~~e~I~~ir~~~p~~~vi~g~V~-----------------------t----~e~a~~l~~aGad~i~-vg~~~G~~ 174 (326)
T PRK05458 124 SDSVINMIQHIKKHLPETFVIAGNVG-----------------------T----PEAVRELENAGADATK-VGIGPGKV 174 (326)
T ss_pred hHHHHHHHHHHHhhCCCCeEEEEecC-----------------------C----HHHHHHHHHcCcCEEE-ECCCCCcc
Confidence 4677888999999999877776 654 1 3457778899999854 33444555
No 186
>TIGR02082 metH 5-methyltetrahydrofolate--homocysteine methyltransferase. S-methyltransferase (MetE, EC 2.1.1.14, the cobalamin-independent methionine synthase) and betaine-homocysteine methyltransferase.
Probab=54.32 E-value=77 Score=36.31 Aligned_cols=42 Identities=26% Similarity=0.373 Sum_probs=35.5
Q ss_pred ecHHhHHHHHHHHHHHHHc-CCCcccc-CCCCcchHHHHHHHHh
Q psy15126 59 HYEKTLKRLADISKAFSDA-GAHIVAP-SDMMDNRIHAIKQSLF 100 (300)
Q Consensus 59 ~nd~Tl~~l~~~A~~~A~a-Gad~vAP-SdmMDgrv~air~aLd 100 (300)
..+.|.+.++++...++++ |+.+|.= ...-+-.|.++++++.
T Consensus 270 ~yd~~p~~~a~~~~~~~~~ggv~IIGGCCGTtPeHI~ala~~l~ 313 (1178)
T TIGR02082 270 EYDLTPDELAKALADFAAEGGLNIVGGCCGTTPDHIRAIAEAVK 313 (1178)
T ss_pred cccCCHHHHHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHhh
Confidence 4667889999999999998 6999876 6666779999999996
No 187
>cd08556 GDPD Glycerophosphodiester phosphodiesterase domain as found in prokaryota and eukaryota, and similar proteins. The typical glycerophosphodiester phosphodiesterase domain (GDPD) consists of a TIM barrel and a small insertion domain named the GDPD-insertion (GDPD-I) domain, which is specific for GDPD proteins. This family corresponds to both typical GDPD domain and GDPD-like domain which lacks the GDPD-I region. Members in this family mainly consist of a large family of prokaryotic and eukaryotic glycerophosphodiester phosphodiesterases (GP-GDEs, EC 3.1.4.46), and a number of uncharacterized homologs. Sphingomyelinases D (SMases D) (sphingomyelin phosphodiesterase D, EC 3.1.4.41) from spider venom, SMases D-like proteins, and phospholipase D (PLD) from several pathogenic bacteria are also included in this family. GDPD plays an essential role in glycerol metabolism and catalyzes the hydrolysis of glycerophosphodiesters to sn-glycerol-3-phosphate (G3P) and the corresponding alcoho
Probab=53.89 E-value=63 Score=26.83 Aligned_cols=55 Identities=24% Similarity=0.303 Sum_probs=37.9
Q ss_pred hhhhcCCceeeccCc--chHHHHHHHHHhhCCCCCEEeEecccccHHHHHHHhCCCCCHHHHHHHHHHHHHHcCCCEEEe
Q psy15126 209 RDVSQGADFLMVKPA--LPYLDIISEVKSRHPAYPLFVYQVSGEYAMLAFAAQAGALDLKRALMETLTCLRRGGADVIIS 286 (300)
Q Consensus 209 ~Da~~GADivmVkPs--mm~ld~Ir~~~d~~~~vpi~aY~vSgeY~~~r~Aa~~~~~n~~eal~E~~~~~~r~GAD~Ii~ 286 (300)
...+.|++++ .|. ...-..++.+++. ++++++|.+ |.. |.+..+.+.|+|.|+|
T Consensus 132 ~~~~~~~~~v--~~~~~~~~~~~i~~~~~~--g~~v~~wtv----------------n~~----~~~~~~~~~GVdgI~T 187 (189)
T cd08556 132 LARALGADAV--NPHYKLLTPELVRAAHAA--GLKVYVWTV----------------NDP----EDARRLLALGVDGIIT 187 (189)
T ss_pred HHHhcCCeEE--ccChhhCCHHHHHHHHHc--CCEEEEEcC----------------CCH----HHHHHHHHCCCCEEec
Confidence 3567899988 555 3366778887774 799999976 322 2233334689999998
Q ss_pred c
Q psy15126 287 Y 287 (300)
Q Consensus 287 y 287 (300)
-
T Consensus 188 D 188 (189)
T cd08556 188 D 188 (189)
T ss_pred C
Confidence 4
No 188
>PRK13352 thiamine biosynthesis protein ThiC; Provisional
Probab=53.80 E-value=34 Score=35.20 Aligned_cols=84 Identities=21% Similarity=0.157 Sum_probs=52.2
Q ss_pred hhcCCceeeccCcchHHHHHHHHHhhCCCCCEEeEecccccHHHHHHHh--CC--CCCHHHHHHHHHHHHHHcCCCEEEe
Q psy15126 211 VSQGADFLMVKPALPYLDIISEVKSRHPAYPLFVYQVSGEYAMLAFAAQ--AG--ALDLKRALMETLTCLRRGGADVIIS 286 (300)
Q Consensus 211 a~~GADivmVkPsmm~ld~Ir~~~d~~~~vpi~aY~vSgeY~~~r~Aa~--~~--~~n~~eal~E~~~~~~r~GAD~Ii~ 286 (300)
++.|||-||==-.---++.||+..=+...+||-.-- -|-.+..+.. .+ -++.++.+..+.... +.|.|++-+
T Consensus 87 ~~~GADtiMDLStggdl~~iR~~il~~s~vpvGTVP---iYqa~~~~~~k~~~~~~mt~d~~~~~ie~qa-~~GVDfmTi 162 (431)
T PRK13352 87 VKYGADTIMDLSTGGDLDEIRRAIIEASPVPVGTVP---IYQAAVEAARKYGSVVDMTEDDLFDVIEKQA-KDGVDFMTI 162 (431)
T ss_pred HHcCCCeEeeccCCCCHHHHHHHHHHcCCCCCcChh---HHHHHHHHHhcCCChhhCCHHHHHHHHHHHH-HhCCCEEEE
Confidence 689999996322223688888876544457765421 2333333321 11 245677777777777 699999888
Q ss_pred cc--hHHHHHHHhh
Q psy15126 287 YY--TPRVLEWLRE 298 (300)
Q Consensus 287 y~--A~~~ld~l~~ 298 (300)
.- ..+.++.+++
T Consensus 163 HcGi~~~~~~~~~~ 176 (431)
T PRK13352 163 HCGVTRETLERLKK 176 (431)
T ss_pred ccchhHHHHHHHHh
Confidence 76 4666776653
No 189
>PF00290 Trp_syntA: Tryptophan synthase alpha chain; InterPro: IPR002028 Tryptophan synthase (4.2.1.20 from EC) catalyzes the last step in the biosynthesis of tryptophan [, ]: L-serine + 1-(indol-3-yl)glycerol 3-phosphate = L-tryptophan + glyceraldehyde 3-phosphate + H2O It has two functional domains, each found in bacteria and plants on a separate subunit. In Escherichia coli, the 2 subunits, A and B, are encoded by the trpA and trpB genes respectively. The alpha chain is for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate and the beta chain IPR006653 from INTERPRO is for the synthesis of tryptophan from indole and serine. In fungi the two domains are fused together in a single multifunctional protein, in the order: (NH2-A-B-COOH) [, ]. The two domains of the Neurospora crassa polypeptide are linked by a connector of 54-amino acid residues that has less than 25% identity to the 45-residue connector of the Saccharomyces cerevisiae (Baker's yeast) polypeptide. Two acidic residues are believed to serve as proton donors/acceptors in the enzyme's catalytic mechanism.; GO: 0004834 tryptophan synthase activity, 0006568 tryptophan metabolic process; PDB: 1TJR_B 1RD5_B 1K8X_A 1QOQ_A 1KFE_A 1KFB_A 2CLO_A 1TTP_A 2RH9_A 1K7F_A ....
Probab=53.64 E-value=48 Score=31.53 Aligned_cols=19 Identities=16% Similarity=0.737 Sum_probs=13.5
Q ss_pred HHHHHHHHhhCCCCCEEeE
Q psy15126 227 LDIISEVKSRHPAYPLFVY 245 (300)
Q Consensus 227 ld~Ir~~~d~~~~vpi~aY 245 (300)
++.+++++.+++++||.-.
T Consensus 75 ~~~~~~ir~~~~~~pivlm 93 (259)
T PF00290_consen 75 FELVKEIRKKEPDIPIVLM 93 (259)
T ss_dssp HHHHHHHHHHCTSSEEEEE
T ss_pred HHHHHHHhccCCCCCEEEE
Confidence 6777888856678887443
No 190
>cd01945 ribokinase_group_B Ribokinase-like subgroup B. Found in bacteria and plants, this subgroup is part of the ribokinase/pfkB superfamily. Its oligomerization state is unknown at this time. .
Probab=53.47 E-value=1.6e+02 Score=26.12 Aligned_cols=37 Identities=19% Similarity=0.112 Sum_probs=28.4
Q ss_pred HHHHHHHHHcCCCccccCCCCcchHH-HHHHHHhhCCC
Q psy15126 68 ADISKAFSDAGAHIVAPSDMMDNRIH-AIKQSLFTSRQ 104 (300)
Q Consensus 68 ~~~A~~~A~aGad~vAPSdmMDgrv~-air~aLd~~g~ 104 (300)
..+|..+++.|.++...+-.-+...+ .+++.|.+.|.
T Consensus 40 ~NvA~~l~~lG~~~~~~~~vG~D~~g~~i~~~l~~~gI 77 (284)
T cd01945 40 ANAAVAVARLGGQARLIGVVGDDAIGRLILAELAAEGV 77 (284)
T ss_pred HHHHHHHHHcCCCeEEEEEecCchHHHHHHHHHHHcCC
Confidence 45778889999998777666555544 58999999998
No 191
>PTZ00300 pyruvate kinase; Provisional
Probab=53.41 E-value=77 Score=32.63 Aligned_cols=90 Identities=17% Similarity=0.236 Sum_probs=55.6
Q ss_pred cccchHhHHHHHHHHHhhhcccccCCCCCccccchhhhcCCceeeccCcch------------HHHHHHHHHhhCCCCCE
Q psy15126 175 SIHYEKTLKRLADISKAFSDAVYVPNHNTDRFQARDVSQGADFLMVKPALP------------YLDIISEVKSRHPAYPL 242 (300)
Q Consensus 175 ~i~nd~tl~~l~~~a~~~a~~~~~~~~n~~~~~~~Da~~GADivmVkPsmm------------~ld~Ir~~~d~~~~vpi 242 (300)
+|++-+-++.|-+| -+|+|.|||+|+.. +=.+|+..++. +.|+
T Consensus 194 KIEt~eav~nldeI-----------------------~~~~DgImVaRGDLgvei~~e~vp~~Qk~Ii~~~~~~--gkpv 248 (454)
T PTZ00300 194 KIENHQGVQNIDSI-----------------------IEESDGIMVARGDLGVEIPAEKVVVAQKILISKCNVA--GKPV 248 (454)
T ss_pred EECCHHHHHhHHHH-----------------------HHhCCEEEEecchhhhhcChHHHHHHHHHHHHHHHHc--CCCE
Confidence 47777777777666 37899999999833 22344444443 4555
Q ss_pred E-eEecccccHHHHHHHhCCCCCHHHHHHHHHHHHHHcCCCEEEe-------cchHHHHHHHh
Q psy15126 243 F-VYQVSGEYAMLAFAAQAGALDLKRALMETLTCLRRGGADVIIS-------YYTPRVLEWLR 297 (300)
Q Consensus 243 ~-aY~vSgeY~~~r~Aa~~~~~n~~eal~E~~~~~~r~GAD~Ii~-------y~A~~~ld~l~ 297 (300)
+ |=|. .-+|.+ ++...|.=+-.+...+ ..|+|.||. +|-.+..+|++
T Consensus 249 I~ATQm--LeSM~~-----~p~PTRAEvsDVanAv-~dG~DavMLS~ETA~G~yP~eaV~~m~ 303 (454)
T PTZ00300 249 ICATQM--LESMTY-----NPRPTRAEVSDVANAV-FNGADCVMLSGETAKGKYPNEVVQYMA 303 (454)
T ss_pred EEECch--HHHHhh-----CCCCCchhHHHHHHHH-HhCCcEEEEechhcCCCCHHHHHHHHH
Confidence 4 4554 333332 4556655556677777 489999998 33344555554
No 192
>PRK07428 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=53.24 E-value=69 Score=30.96 Aligned_cols=72 Identities=21% Similarity=0.351 Sum_probs=42.6
Q ss_pred cccCCCCCccccchhhhcCCceeeccCcch-HHHH-HHHHHhhCCCCCEEeEecccccHHHHHHHhCCCCCHHHHHHHHH
Q psy15126 196 VYVPNHNTDRFQARDVSQGADFLMVKPALP-YLDI-ISEVKSRHPAYPLFVYQVSGEYAMLAFAAQAGALDLKRALMETL 273 (300)
Q Consensus 196 ~~~~~~n~~~~~~~Da~~GADivmVkPsmm-~ld~-Ir~~~d~~~~vpi~aY~vSgeY~~~r~Aa~~~~~n~~eal~E~~ 273 (300)
|=|--+|.+...+ =+++|||+||+-+-.+ .+.. ++.++...+++|+.+= |-+|. |.+
T Consensus 199 I~VEv~tleea~e-A~~~GaD~I~LDn~~~e~l~~av~~~~~~~~~i~leAs---------------GGIt~-----~ni 257 (288)
T PRK07428 199 IEVETETLEQVQE-ALEYGADIIMLDNMPVDLMQQAVQLIRQQNPRVKIEAS---------------GNITL-----ETI 257 (288)
T ss_pred EEEECCCHHHHHH-HHHcCCCEEEECCCCHHHHHHHHHHHHhcCCCeEEEEE---------------CCCCH-----HHH
Confidence 3344456555433 2589999999987533 3333 3333333677777653 34564 334
Q ss_pred HHHHHcCCCEEEecc
Q psy15126 274 TCLRRGGADVIISYY 288 (300)
Q Consensus 274 ~~~~r~GAD~Ii~y~ 288 (300)
..+...|+|.|-|-.
T Consensus 258 ~~ya~tGvD~Isvgs 272 (288)
T PRK07428 258 RAVAETGVDYISSSA 272 (288)
T ss_pred HHHHHcCCCEEEEch
Confidence 455578999998754
No 193
>PRK07360 FO synthase subunit 2; Reviewed
Probab=53.04 E-value=31 Score=33.66 Aligned_cols=52 Identities=27% Similarity=0.435 Sum_probs=35.7
Q ss_pred HHHHHHHHHhhCCCCCEEeEecccccHHHHHHHhCCCCCHHHHHHHHHHHHHHcCCCEEE
Q psy15126 226 YLDIISEVKSRHPAYPLFVYQVSGEYAMLAFAAQAGALDLKRALMETLTCLRRGGADVII 285 (300)
Q Consensus 226 ~ld~Ir~~~d~~~~vpi~aY~vSgeY~~~r~Aa~~~~~n~~eal~E~~~~~~r~GAD~Ii 285 (300)
+.++||++|+.+|++.|-+++. .|+..+.. ..|. ...|.++.++++|.|.+.
T Consensus 127 ~~~~i~~ik~~~~~i~i~a~s~-~ei~~~~~--~~G~-----~~~e~l~~LkeAGld~~~ 178 (371)
T PRK07360 127 YLEILEAIKEEFPDIHLHAFSP-MEVYFAAR--EDGL-----SYEEVLKALKDAGLDSMP 178 (371)
T ss_pred HHHHHHHHHHhCCCcceeeCCH-HHHHHHHh--hcCC-----CHHHHHHHHHHcCCCcCC
Confidence 7899999999888888887732 23333221 2332 236778888899999884
No 194
>PRK01130 N-acetylmannosamine-6-phosphate 2-epimerase; Provisional
Probab=52.73 E-value=50 Score=29.33 Aligned_cols=54 Identities=22% Similarity=0.380 Sum_probs=33.4
Q ss_pred hhcCCceeec------cCc-chHHHHHHHHHhhCCCCCEEeEecccccHHHHHHHhCCCCCHHHHHHHHHHHHHHcCCCE
Q psy15126 211 VSQGADFLMV------KPA-LPYLDIISEVKSRHPAYPLFVYQVSGEYAMLAFAAQAGALDLKRALMETLTCLRRGGADV 283 (300)
Q Consensus 211 a~~GADivmV------kPs-mm~ld~Ir~~~d~~~~vpi~aY~vSgeY~~~r~Aa~~~~~n~~eal~E~~~~~~r~GAD~ 283 (300)
.++|||+|.+ .|. ....+.++++++. +++|++.-. .+.+++ .. ..+.|+|+
T Consensus 85 ~~aGad~I~~d~~~~~~p~~~~~~~~i~~~~~~-~~i~vi~~v----------------~t~ee~----~~-a~~~G~d~ 142 (221)
T PRK01130 85 AAAGADIIALDATLRPRPDGETLAELVKRIKEY-PGQLLMADC----------------STLEEG----LA-AQKLGFDF 142 (221)
T ss_pred HHcCCCEEEEeCCCCCCCCCCCHHHHHHHHHhC-CCCeEEEeC----------------CCHHHH----HH-HHHcCCCE
Confidence 6899998754 232 2345667777665 578887631 244444 22 33689999
Q ss_pred EEe
Q psy15126 284 IIS 286 (300)
Q Consensus 284 Ii~ 286 (300)
|.+
T Consensus 143 i~~ 145 (221)
T PRK01130 143 IGT 145 (221)
T ss_pred EEc
Confidence 865
No 195
>PRK01362 putative translaldolase; Provisional
Probab=52.62 E-value=18 Score=33.30 Aligned_cols=92 Identities=22% Similarity=0.232 Sum_probs=56.4
Q ss_pred CCCCCChHHHHHHHHHHhCCCcEEEeeecCCCCCCCCccee--eCCCCceecHHhHHHHHHHHHHHHHcCCCcccc-CCC
Q psy15126 11 ADTPDNPLFQVIPMIRKQFPSLTIACDVCLCGYTSHGHCAI--FNEDGSIHYEKTLKRLADISKAFSDAGAHIVAP-SDM 87 (300)
Q Consensus 11 a~~~~~~~~~~i~~ik~~~p~l~i~~Dvclc~yt~hGHcgi--~~~~g~i~nd~Tl~~l~~~A~~~A~aGad~vAP-Sdm 87 (300)
+.+.++.+.+|.+ |++.+|+++| =-|-|..|--.+ +...| |.--.|.---++||+..+++|++.|+| ..=
T Consensus 60 ~~d~~~m~~~a~~-l~~~~~~i~i-----KIP~T~~G~~a~~~L~~~G-i~v~~T~vfs~~Qa~~Aa~aGa~yispyvgR 132 (214)
T PRK01362 60 ALDAEGMIKEGRE-LAKIAPNVVV-----KIPMTPEGLKAVKALSKEG-IKTNVTLIFSANQALLAAKAGATYVSPFVGR 132 (214)
T ss_pred eCCHHHHHHHHHH-HHHhCCCEEE-----EeCCCHHHHHHHHHHHHCC-CceEEeeecCHHHHHHHHhcCCcEEEeecch
Confidence 4456667776644 6667888654 237777663222 22233 232334444467999999999999999 111
Q ss_pred C-----c--chHHHHHHHHhhCCCCCCcccc
Q psy15126 88 M-----D--NRIHAIKQSLFTSRQSSTTGLL 111 (300)
Q Consensus 88 M-----D--grv~air~aLd~~g~~~~v~Im 111 (300)
| | ..+..+++.++..|+ ++-||
T Consensus 133 i~d~g~dg~~~i~~~~~~~~~~~~--~tkil 161 (214)
T PRK01362 133 LDDIGTDGMELIEDIREIYDNYGF--DTEII 161 (214)
T ss_pred HhhcCCCHHHHHHHHHHHHHHcCC--CcEEE
Confidence 1 2 236778888888887 35666
No 196
>KOG2550|consensus
Probab=52.61 E-value=22 Score=36.87 Aligned_cols=59 Identities=22% Similarity=0.260 Sum_probs=43.8
Q ss_pred chhhhcCCceeeccCcc----hHHHHHHHHHhhCCCCCEEeEecccccHHHHHHHhCCCCCHHHHHHHHHHHHHHcCCCE
Q psy15126 208 ARDVSQGADFLMVKPAL----PYLDIISEVKSRHPAYPLFVYQVSGEYAMLAFAAQAGALDLKRALMETLTCLRRGGADV 283 (300)
Q Consensus 208 ~~Da~~GADivmVkPsm----m~ld~Ir~~~d~~~~vpi~aY~vSgeY~~~r~Aa~~~~~n~~eal~E~~~~~~r~GAD~ 283 (300)
.+-+++|.|+|+.--|- .++..|+-+|+.||++.|++=+| .-+|....+..+|||.
T Consensus 257 ~ll~~aGvdvviLDSSqGnS~~qiemik~iK~~yP~l~ViaGNV--------------------VT~~qa~nLI~aGaDg 316 (503)
T KOG2550|consen 257 DLLVQAGVDVVILDSSQGNSIYQLEMIKYIKETYPDLQIIAGNV--------------------VTKEQAANLIAAGADG 316 (503)
T ss_pred HHhhhcCCcEEEEecCCCcchhHHHHHHHHHhhCCCceeeccce--------------------eeHHHHHHHHHccCce
Confidence 34478999999877762 27999999999999999999877 1233344455689987
Q ss_pred EEe
Q psy15126 284 IIS 286 (300)
Q Consensus 284 Ii~ 286 (300)
+=+
T Consensus 317 LrV 319 (503)
T KOG2550|consen 317 LRV 319 (503)
T ss_pred eEe
Confidence 643
No 197
>PRK09282 pyruvate carboxylase subunit B; Validated
Probab=51.84 E-value=3.2e+02 Score=28.99 Aligned_cols=68 Identities=16% Similarity=0.182 Sum_probs=46.4
Q ss_pred HHHHHHHHHhh------CCCCCEEeEecccc-cHHHHHH-HhCCCCCHHHHHHHHHHHHHHcCCCEEEecchHHHH
Q psy15126 226 YLDIISEVKSR------HPAYPLFVYQVSGE-YAMLAFA-AQAGALDLKRALMETLTCLRRGGADVIISYYTPRVL 293 (300)
Q Consensus 226 ~ld~Ir~~~d~------~~~vpi~aY~vSge-Y~~~r~A-a~~~~~n~~eal~E~~~~~~r~GAD~Ii~y~A~~~l 293 (300)
|+.-+|+.-.. -.+.-|+.++.+|- |+-++.= -++|..++=+.++|-....++..-+.++|-|..++.
T Consensus 269 ~~~~~~~~y~~~~~~~~~~~~~v~~~~~pGg~~snl~~q~~~~g~~d~~~~vl~e~~~v~~~lG~~~~VTP~Sq~v 344 (592)
T PRK09282 269 YFREVRKKYKQFESEFTIVDTRVLIHQVPGGMISNLVSQLKEQNALDKLDEVLEEIPRVREDLGYPPLVTPTSQIV 344 (592)
T ss_pred HHHHHHHHhhcCCCccccCCccEEEEcCCCcHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHcCCCCeECChhHhH
Confidence 55555544422 23556788888665 6655544 467888876667777777778999999999977654
No 198
>PRK12331 oxaloacetate decarboxylase; Provisional
Probab=51.61 E-value=58 Score=33.20 Aligned_cols=46 Identities=22% Similarity=0.366 Sum_probs=31.7
Q ss_pred hHHHHHHHHHhhhcccccCCCCCccccchhhhcCCceeeccCc--ch----HHHHHHHHHhhCCCCCEEeE
Q psy15126 181 TLKRLADISKAFSDAVYVPNHNTDRFQARDVSQGADFLMVKPA--LP----YLDIISEVKSRHPAYPLFVY 245 (300)
Q Consensus 181 tl~~l~~~a~~~a~~~~~~~~n~~~~~~~Da~~GADivmVkPs--mm----~ld~Ir~~~d~~~~vpi~aY 245 (300)
|++.+.+.+... .++|||.|-+|=. ++ --..|+.+++++ ++||-.+
T Consensus 152 ~~~~~~~~a~~l------------------~~~Gad~I~i~Dt~G~l~P~~v~~lv~alk~~~-~~pi~~H 203 (448)
T PRK12331 152 TIDYFVKLAKEM------------------QEMGADSICIKDMAGILTPYVAYELVKRIKEAV-TVPLEVH 203 (448)
T ss_pred CHHHHHHHHHHH------------------HHcCCCEEEEcCCCCCCCHHHHHHHHHHHHHhc-CCeEEEE
Confidence 566666666665 6889999977654 22 456777777777 4887554
No 199
>cd08210 RLP_RrRLP Ribulose bisphosphate carboxylase like proteins (RLPs) similar to R.rubrum RLP. RLP from Rhodospirillum rubrum plays a role in an uncharacterized sulfur salvage pathway and has been shown to catalyze a novel isomerization reaction that converts 5-methylthio-d-ribulose 1-phosphate to a 3:1 mixture of 1-methylthioxylulose 5-phosphate and 1-methylthioribulose 5-phosphate.
Probab=51.56 E-value=91 Score=31.00 Aligned_cols=79 Identities=22% Similarity=0.297 Sum_probs=47.9
Q ss_pred hHHHHHHHHHhhhcccccCCCCCccccchhhhcCCceeeccCc--------ch---HHHHHHHHHhhCC----CCCEEeE
Q psy15126 181 TLKRLADISKAFSDAVYVPNHNTDRFQARDVSQGADFLMVKPA--------LP---YLDIISEVKSRHP----AYPLFVY 245 (300)
Q Consensus 181 tl~~l~~~a~~~a~~~~~~~~n~~~~~~~Da~~GADivmVkPs--------mm---~ld~Ir~~~d~~~----~vpi~aY 245 (300)
+.+.+++++-.+ +..|.|+| |.. ++ ++.++.++.++.. ..-+.+=
T Consensus 139 ~~~~~a~~~~~~------------------~~gGvD~I--KdDe~l~~~~~~p~~eRv~~v~~av~~a~~eTG~~~~y~~ 198 (364)
T cd08210 139 SAAELAELAYAF------------------ALGGIDII--KDDHGLADQPFAPFEERVKACQEAVAEANAETGGRTLYAP 198 (364)
T ss_pred CHHHHHHHHHHH------------------HhcCCCee--ecCccccCccCCCHHHHHHHHHHHHHHHHhhcCCcceEEE
Confidence 456777777776 68999999 654 22 5666666665521 2233333
Q ss_pred ecccccHHHHHHHhCCCCCHHHHHHHHHHHHHHcCCCEEEecchHHHHH
Q psy15126 246 QVSGEYAMLAFAAQAGALDLKRALMETLTCLRRGGADVIISYYTPRVLE 294 (300)
Q Consensus 246 ~vSgeY~~~r~Aa~~~~~n~~eal~E~~~~~~r~GAD~Ii~y~A~~~ld 294 (300)
++|+. .. -++|-....+++||+.+|+-|-..-++
T Consensus 199 Nita~--------------~~-em~~ra~~a~~~Ga~~vMv~~~~~G~~ 232 (364)
T cd08210 199 NVTGP--------------PT-QLLERARFAKEAGAGGVLIAPGLTGLD 232 (364)
T ss_pred ecCCC--------------HH-HHHHHHHHHHHcCCCEEEeecccchHH
Confidence 44442 22 334444555589999999988655443
No 200
>PRK07695 transcriptional regulator TenI; Provisional
Probab=51.32 E-value=69 Score=28.07 Aligned_cols=56 Identities=14% Similarity=0.218 Sum_probs=36.4
Q ss_pred hhcCCceeeccC---c-------chHHHHHHHHHhhCCCCCEEeEecccccHHHHHHHhCCCCCHHHHHHHHHHHHHHcC
Q psy15126 211 VSQGADFLMVKP---A-------LPYLDIISEVKSRHPAYPLFVYQVSGEYAMLAFAAQAGALDLKRALMETLTCLRRGG 280 (300)
Q Consensus 211 a~~GADivmVkP---s-------mm~ld~Ir~~~d~~~~vpi~aY~vSgeY~~~r~Aa~~~~~n~~eal~E~~~~~~r~G 280 (300)
.+.|||+|++.| + ...++.++++++.. ++||++-. -+|.+. +..+.+.|
T Consensus 112 ~~~Gadyi~~g~v~~t~~k~~~~~~g~~~l~~~~~~~-~ipvia~G---------------GI~~~~-----~~~~~~~G 170 (201)
T PRK07695 112 EKNGADYVVYGHVFPTDCKKGVPARGLEELSDIARAL-SIPVIAIG---------------GITPEN-----TRDVLAAG 170 (201)
T ss_pred HHcCCCEEEECCCCCCCCCCCCCCCCHHHHHHHHHhC-CCCEEEEc---------------CCCHHH-----HHHHHHcC
Confidence 478999997655 1 12578888888875 69988762 235432 23333679
Q ss_pred CCEEEec
Q psy15126 281 ADVIISY 287 (300)
Q Consensus 281 AD~Ii~y 287 (300)
||.|.+-
T Consensus 171 a~gvav~ 177 (201)
T PRK07695 171 VSGIAVM 177 (201)
T ss_pred CCEEEEE
Confidence 9988653
No 201
>PRK10336 DNA-binding transcriptional regulator QseB; Provisional
Probab=51.31 E-value=74 Score=26.22 Aligned_cols=49 Identities=18% Similarity=0.252 Sum_probs=34.9
Q ss_pred cCCceeeccCcch---HHHHHHHHHhhCCCCCEEeEecccccHHHHHHHhCC
Q psy15126 213 QGADFLMVKPALP---YLDIISEVKSRHPAYPLFVYQVSGEYAMLAFAAQAG 261 (300)
Q Consensus 213 ~GADivmVkPsmm---~ld~Ir~~~d~~~~vpi~aY~vSgeY~~~r~Aa~~~ 261 (300)
...|+|++-..++ -++.+++++...+++|++..+..........+.+.|
T Consensus 43 ~~~dlvild~~l~~~~g~~~~~~i~~~~~~~~ii~lt~~~~~~~~~~~~~~g 94 (219)
T PRK10336 43 APYDAVILDLTLPGMDGRDILREWREKGQREPVLILTARDALAERVEGLRLG 94 (219)
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCCCcEEEEECCCCHHHHHHHHhCC
Confidence 4569998876543 678888888777889999987655555555555554
No 202
>PRK12656 fructose-6-phosphate aldolase; Reviewed
Probab=51.09 E-value=20 Score=33.30 Aligned_cols=93 Identities=20% Similarity=0.195 Sum_probs=52.8
Q ss_pred CCCCCChHHHHHHHHHHhCCCcEEEeeecCCCCCCCCccee--eCCCCceecHHhHHHHHHHHHHHHHcCCCccccC-CC
Q psy15126 11 ADTPDNPLFQVIPMIRKQFPSLTIACDVCLCGYTSHGHCAI--FNEDGSIHYEKTLKRLADISKAFSDAGAHIVAPS-DM 87 (300)
Q Consensus 11 a~~~~~~~~~~i~~ik~~~p~l~i~~Dvclc~yt~hGHcgi--~~~~g~i~nd~Tl~~l~~~A~~~A~aGad~vAPS-dm 87 (300)
+.+.+..+.+|-+..+..-|+++| =-|-|-.|--.+ +...| |.--.|+=--++||+..+++||+.|+|- .=
T Consensus 63 ~~~~~~mi~eA~~l~~~~~~nv~V-----KIP~T~~Gl~Ai~~L~~~G-i~vn~T~ifs~~Qa~~Aa~aGa~yvsPyvgR 136 (222)
T PRK12656 63 AQDYEGILKDAHEIRRQCGDDVYI-----KVPVTPAGLAAIKTLKAEG-YHITATAIYTVFQGLLAIEAGADYLAPYYNR 136 (222)
T ss_pred ECCHHHHHHHHHHHHHHhCCCEEE-----EeCCCHHHHHHHHHHHHCC-CceEEeeeCCHHHHHHHHHCCCCEEecccch
Confidence 344555555555433333345544 135555543332 22233 3333344444568999999999999991 11
Q ss_pred -----Ccc--hHHHHHHHHhhCCCCCCcccc
Q psy15126 88 -----MDN--RIHAIKQSLFTSRQSSTTGLL 111 (300)
Q Consensus 88 -----MDg--rv~air~aLd~~g~~~~v~Im 111 (300)
.|| .|..+++.++..++ ++-||
T Consensus 137 i~d~g~D~~~~i~~i~~~~~~~~~--~tkIL 165 (222)
T PRK12656 137 MENLNIDSNAVIGQLAEAIDRENS--DSKIL 165 (222)
T ss_pred hhhcCCCHHHHHHHHHHHHHhcCC--CCEEE
Confidence 233 47788888888887 35566
No 203
>PRK14042 pyruvate carboxylase subunit B; Provisional
Probab=50.41 E-value=65 Score=34.25 Aligned_cols=46 Identities=20% Similarity=0.396 Sum_probs=32.4
Q ss_pred hHHHHHHHHHhhhcccccCCCCCccccchhhhcCCceeeccCc--ch----HHHHHHHHHhhCCCCCEEeE
Q psy15126 181 TLKRLADISKAFSDAVYVPNHNTDRFQARDVSQGADFLMVKPA--LP----YLDIISEVKSRHPAYPLFVY 245 (300)
Q Consensus 181 tl~~l~~~a~~~a~~~~~~~~n~~~~~~~Da~~GADivmVkPs--mm----~ld~Ir~~~d~~~~vpi~aY 245 (300)
|++.+.+.+... .+.|||.|.+|=. ++ --..++.+++++ ++||-.+
T Consensus 152 t~e~~~~~ak~l------------------~~~Gad~I~IkDtaG~l~P~~v~~lv~alk~~~-~ipi~~H 203 (596)
T PRK14042 152 TLDNFLELGKKL------------------AEMGCDSIAIKDMAGLLTPTVTVELYAGLKQAT-GLPVHLH 203 (596)
T ss_pred CHHHHHHHHHHH------------------HHcCCCEEEeCCcccCCCHHHHHHHHHHHHhhc-CCEEEEE
Confidence 678888887776 6789999977754 22 356667777776 5887544
No 204
>PRK08649 inosine 5-monophosphate dehydrogenase; Validated
Probab=50.38 E-value=31 Score=34.22 Aligned_cols=64 Identities=19% Similarity=0.248 Sum_probs=36.9
Q ss_pred CCccccchhhhcCCceeeccCc---------c-hHHHHHHHHHhhCCCCCEEeEecccccHHHHHHHhCCCCCHHHHHHH
Q psy15126 202 NTDRFQARDVSQGADFLMVKPA---------L-PYLDIISEVKSRHPAYPLFVYQVSGEYAMLAFAAQAGALDLKRALME 271 (300)
Q Consensus 202 n~~~~~~~Da~~GADivmVkPs---------m-m~ld~Ir~~~d~~~~vpi~aY~vSgeY~~~r~Aa~~~~~n~~eal~E 271 (300)
|+.++...=+++|+|+|.|-.. - -..+ +.+.++++ ++||++=++ .+.+.|
T Consensus 142 ~~~e~a~~l~eaGvd~I~vhgrt~~~~h~~~~~~~~~-i~~~ik~~-~ipVIaG~V---------------~t~e~A--- 201 (368)
T PRK08649 142 RAQELAPTVVEAGVDLFVIQGTVVSAEHVSKEGEPLN-LKEFIYEL-DVPVIVGGC---------------VTYTTA--- 201 (368)
T ss_pred CHHHHHHHHHHCCCCEEEEeccchhhhccCCcCCHHH-HHHHHHHC-CCCEEEeCC---------------CCHHHH---
Confidence 3444444447999999998541 1 1344 44445455 799987323 232222
Q ss_pred HHHHHHHcCCCEEEec
Q psy15126 272 TLTCLRRGGADVIISY 287 (300)
Q Consensus 272 ~~~~~~r~GAD~Ii~y 287 (300)
+.+.++|||.||+-
T Consensus 202 --~~l~~aGAD~V~VG 215 (368)
T PRK08649 202 --LHLMRTGAAGVLVG 215 (368)
T ss_pred --HHHHHcCCCEEEEC
Confidence 22225899999875
No 205
>PRK00230 orotidine 5'-phosphate decarboxylase; Reviewed
Probab=50.29 E-value=1.2e+02 Score=27.80 Aligned_cols=108 Identities=17% Similarity=0.173 Sum_probs=61.5
Q ss_pred HhHHHHHHH-HHhhhcccc--cCCCCCccccchhhhcCCceeeccCcc--hHHHHHHHHHhhCCCCCEEeEec-ccccHH
Q psy15126 180 KTLKRLADI-SKAFSDAVY--VPNHNTDRFQARDVSQGADFLMVKPAL--PYLDIISEVKSRHPAYPLFVYQV-SGEYAM 253 (300)
Q Consensus 180 ~tl~~l~~~-a~~~a~~~~--~~~~n~~~~~~~Da~~GADivmVkPsm--m~ld~Ir~~~d~~~~vpi~aY~v-SgeY~~ 253 (300)
++++.|.+. ...++|.=. +|+++ .+....=.+.|||++.|-+.. ..+....++.+.+.+--++.=.+ +.. .
T Consensus 44 ~~i~~l~~~~~~i~~D~Kl~Di~~t~-~~~i~~~~~~gad~itvH~~ag~~~i~~~~~~~~~~~~~~~~~V~~lts~-~- 120 (230)
T PRK00230 44 QFVRELKQRGFKVFLDLKLHDIPNTV-AKAVRALAKLGVDMVNVHASGGPRMMKAAREALEPKSRPLLIAVTVLTSM-D- 120 (230)
T ss_pred HHHHHHHhcCCCEEEEeehhhccccH-HHHHHHHHHcCCCEEEEcccCCHHHHHHHHHHhhccCCCeEEEEEECCCC-C-
Confidence 456666665 445666666 44433 122222368999999999873 35666666544431111222222 221 2
Q ss_pred HHHHHhCCC-CCHHHHHHHHHHHHHHcCCCEEEecchH
Q psy15126 254 LAFAAQAGA-LDLKRALMETLTCLRRGGADVIISYYTP 290 (300)
Q Consensus 254 ~r~Aa~~~~-~n~~eal~E~~~~~~r~GAD~Ii~y~A~ 290 (300)
-+...+.+. .+.++.+....+...+.|+|.+.+.+..
T Consensus 121 ~~~l~~~~~~~~~~~~v~~~a~~a~~~g~dgvv~~~~~ 158 (230)
T PRK00230 121 EEDLAELGINLSLEEQVLRLAKLAQEAGLDGVVCSAQE 158 (230)
T ss_pred HHHHHhCcCCCCHHHHHHHHHHHHHHcCCeEEEeChHH
Confidence 233323332 2457788888888778999999887655
No 206
>PF09505 Dimeth_Pyl: Dimethylamine methyltransferase (Dimeth_PyL); InterPro: IPR012653 This family consists of dimethylamine methyltransferases from the genus Methanosarcina. It is found in three nearly identical copies in each of Methanosarcina acetivorans, Methanosarcina barkeri, and Methanosarcina mazei. It is one of a suite of three non-homologous enzymes with a critical UAG-encoded pyrrolysine residue in these species (along with trimethylamine methyltransferase and monomethylamine methyltransferase). It demethylates dimethylamine, leaving monomethylamine, and methylates the prosthetic group of the small corrinoid protein MtbC. The methyl group is then transferred by methylcorrinoid:coenzyme M methyltransferase to coenzyme M. Note that the pyrrolysine residue is variously translated as K or X, or as a stop codon that truncates the sequence.; GO: 0008168 methyltransferase activity, 0015948 methanogenesis
Probab=50.08 E-value=10 Score=38.28 Aligned_cols=72 Identities=25% Similarity=0.428 Sum_probs=41.3
Q ss_pred CcccccCCCCCChHHHHHHHHHHhCCCcEEEeeecCCCCCCCCcceeeCCCCceecH-HhHHHH--HHHHHHHHHcCCCc
Q psy15126 5 DETASFADTPDNPLFQVIPMIRKQFPSLTIACDVCLCGYTSHGHCAIFNEDGSIHYE-KTLKRL--ADISKAFSDAGAHI 81 (300)
Q Consensus 5 d~~~s~a~~~~~~~~~~i~~ik~~~p~l~i~~Dvclc~yt~hGHcgi~~~~g~i~nd-~Tl~~l--~~~A~~~A~aGad~ 81 (300)
|.+|+..+..==-.-+|+..+|++||++.|=.-.+ |-|-+= -.|.+.+| .||.-| -+|+.-.++||+++
T Consensus 211 DttgaaGd~Df~atL~AvE~Lr~~fP~m~IE~GMA-------gE~vLG-MHG~leYdg~~LAGL~PHqQa~l~~kAGanv 282 (466)
T PF09505_consen 211 DTTGAAGDGDFYATLKAVEALRKKFPNMYIEMGMA-------GEFVLG-MHGELEYDGVTLAGLWPHQQAPLAEKAGANV 282 (466)
T ss_pred cccccCCChhHHHHHHHHHHHHHhCcceeEecccc-------cceeee-cccceeECCEeeeccCcccccchHHhcCcce
Confidence 44444443332334579999999999998844322 222111 11222221 223322 25888899999999
Q ss_pred ccc
Q psy15126 82 VAP 84 (300)
Q Consensus 82 vAP 84 (300)
..|
T Consensus 283 FGP 285 (466)
T PF09505_consen 283 FGP 285 (466)
T ss_pred ecc
Confidence 999
No 207
>PRK04180 pyridoxal biosynthesis lyase PdxS; Provisional
Probab=50.07 E-value=33 Score=33.66 Aligned_cols=53 Identities=23% Similarity=0.244 Sum_probs=39.1
Q ss_pred hhcCCceeeccCcc---hHHHHHHHHHhhCCCCCEEeEecccccHHHHHHHhCCCCCHHHHHHHHHHHHHHcCCCEEEec
Q psy15126 211 VSQGADFLMVKPAL---PYLDIISEVKSRHPAYPLFVYQVSGEYAMLAFAAQAGALDLKRALMETLTCLRRGGADVIISY 287 (300)
Q Consensus 211 a~~GADivmVkPsm---m~ld~Ir~~~d~~~~vpi~aY~vSgeY~~~r~Aa~~~~~n~~eal~E~~~~~~r~GAD~Ii~y 287 (300)
.+.|+|+| .-|. |--+.++..|..| ++|+|+= ..|.. |.+..+ ++|||||-|+
T Consensus 93 ~~~GvDiI--D~Te~lrpad~~~~~~K~~f-~~~fmad----------------~~~l~----EAlrai-~~GadmI~Tt 148 (293)
T PRK04180 93 EALGVDYI--DESEVLTPADEEYHIDKWDF-TVPFVCG----------------ARNLG----EALRRI-AEGAAMIRTK 148 (293)
T ss_pred HHcCCCEE--eccCCCCchHHHHHHHHHHc-CCCEEcc----------------CCCHH----HHHHHH-HCCCCeeecc
Confidence 68999999 5442 2336777778888 8999975 34554 555677 6999999998
No 208
>cd00381 IMPDH IMPDH: The catalytic domain of the inosine monophosphate dehydrogenase. IMPDH catalyzes the NAD-dependent oxidation of inosine 5'-monophosphate (IMP) to xanthosine 5' monophosphate (XMP). It is a rate-limiting step in the de novo synthesis of the guanine nucleotides. There is often a CBS domain inserted in the middle of this domain, which is proposed to play a regulatory role. IMPDH is a key enzyme in the regulation of cell proliferation and differentiation. It has been identified as an attractive target for developing chemotherapeutic agents.
Probab=50.02 E-value=64 Score=31.17 Aligned_cols=60 Identities=22% Similarity=0.376 Sum_probs=36.5
Q ss_pred chhhhcCCceeec--cCc------------chHHHHHHHHHhhC--CCCCEEeEecccccHHHHHHHhCCCCCHHHHHHH
Q psy15126 208 ARDVSQGADFLMV--KPA------------LPYLDIISEVKSRH--PAYPLFVYQVSGEYAMLAFAAQAGALDLKRALME 271 (300)
Q Consensus 208 ~~Da~~GADivmV--kPs------------mm~ld~Ir~~~d~~--~~vpi~aY~vSgeY~~~r~Aa~~~~~n~~eal~E 271 (300)
..=+++|||+|.| .|+ .+.+..|.++.+.. .++||++ .=|..+.. +
T Consensus 150 ~~l~~aGaD~I~vg~g~G~~~~t~~~~g~g~p~~~~i~~v~~~~~~~~vpVIA--------------~GGI~~~~----d 211 (325)
T cd00381 150 RDLIDAGADGVKVGIGPGSICTTRIVTGVGVPQATAVADVAAAARDYGVPVIA--------------DGGIRTSG----D 211 (325)
T ss_pred HHHHhcCCCEEEECCCCCcCcccceeCCCCCCHHHHHHHHHHHHhhcCCcEEe--------------cCCCCCHH----H
Confidence 3336799999987 242 13556666665441 2688873 22444553 3
Q ss_pred HHHHHHHcCCCEEEe
Q psy15126 272 TLTCLRRGGADVIIS 286 (300)
Q Consensus 272 ~~~~~~r~GAD~Ii~ 286 (300)
..+.+ ..|||.+|+
T Consensus 212 i~kAl-a~GA~~Vmi 225 (325)
T cd00381 212 IVKAL-AAGADAVML 225 (325)
T ss_pred HHHHH-HcCCCEEEe
Confidence 34455 589999998
No 209
>cd07940 DRE_TIM_IPMS 2-isopropylmalate synthase (IPMS), N-terminal catalytic TIM barrel domain. 2-isopropylmalate synthase (IPMS) catalyzes an aldol-type condensation of acetyl-CoA and 2-oxoisovalerate yielding 2-isopropylmalate and CoA, the first committed step in leucine biosynthesis. This family includes the Arabidopsis thaliana IPMS1 and IPMS2 proteins, the Glycine max GmN56 protein, and the Brassica insularis BatIMS protein. This family also includes a group of archeal IPMS-like proteins represented by the Methanocaldococcus jannaschii AksA protein. AksA catalyzes the condensation of alpha-ketoglutarate and acetyl-CoA to form trans-homoaconitate, one of 13 steps in the conversion of alpha-ketoglutarate and acetylCoA to alpha-ketosuberate, a precursor to coenzyme B and biotin. AksA also catalyzes the condensation of alpha-ketoadipate or alpha-ketopimelate with acetylCoA to form, respectively, the (R)-homocitrate homologs (R)-2-hydroxy-1,2,5-pentanetricarboxylic acid and (R)-2-h
Probab=49.76 E-value=97 Score=28.59 Aligned_cols=43 Identities=14% Similarity=0.360 Sum_probs=28.8
Q ss_pred hhcCCceeeccCc--ch----HHHHHHHHHhhCCC--CCEEeEecccccHHH
Q psy15126 211 VSQGADFLMVKPA--LP----YLDIISEVKSRHPA--YPLFVYQVSGEYAML 254 (300)
Q Consensus 211 a~~GADivmVkPs--mm----~ld~Ir~~~d~~~~--vpi~aY~vSgeY~~~ 254 (300)
.+.|+|.|.++=+ .+ .-+.++.+++.+++ +|| .++.---+|+-
T Consensus 153 ~~~G~~~i~l~DT~G~~~P~~v~~lv~~l~~~~~~~~i~l-~~H~Hn~~GlA 203 (268)
T cd07940 153 IEAGATTINIPDTVGYLTPEEFGELIKKLKENVPNIKVPI-SVHCHNDLGLA 203 (268)
T ss_pred HHcCCCEEEECCCCCCCCHHHHHHHHHHHHHhCCCCceeE-EEEecCCcchH
Confidence 5689999977765 22 45677777777765 776 55565555543
No 210
>TIGR03332 salvage_mtnW 2,3-diketo-5-methylthiopentyl-1-phosphate enolase. Members of this family are the methionine salvage pathway enzyme 2,3-diketo-5-methylthiopentyl-1-phosphate enolase, a homolog of RuBisCO. This protein family seems restricted to Bacillus subtilis and close relatives, where two separate proteins carry the enolase and phosphatase activities that in other species occur in a single protein, MtnC (TIGR01691).
Probab=49.75 E-value=1.1e+02 Score=31.01 Aligned_cols=84 Identities=23% Similarity=0.235 Sum_probs=50.4
Q ss_pred HhHHHHHHHHHhhhcccccCCCCCccccchhhhcCCceeeccC--------cch---HHHHHHHHH----hhCCCCCEEe
Q psy15126 180 KTLKRLADISKAFSDAVYVPNHNTDRFQARDVSQGADFLMVKP--------ALP---YLDIISEVK----SRHPAYPLFV 244 (300)
Q Consensus 180 ~tl~~l~~~a~~~a~~~~~~~~n~~~~~~~Da~~GADivmVkP--------smm---~ld~Ir~~~----d~~~~vpi~a 244 (300)
.+.+.+++++..+ +.-|.|+| |= ..+ |+..+.++. ++.-...+.+
T Consensus 152 l~~~~~A~~~y~~------------------~~GGvD~I--KDDE~l~dq~~~p~~~Rv~~~~~a~~~a~~eTG~~~~y~ 211 (407)
T TIGR03332 152 RDLGYLKEQLRQQ------------------ALGGVDLV--KDDEILFETGLAPFEKRITEGKEVLQEVYEQTGHKTLYA 211 (407)
T ss_pred CCHHHHHHHHHHH------------------hccCcccc--cCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCcceEe
Confidence 4667888888887 68899999 73 233 444444443 3332334444
Q ss_pred EecccccHHHHHHHhCCCCCHHHHHHHHHHHHHHcCCCEEEecc---hHHHHHHHhh
Q psy15126 245 YQVSGEYAMLAFAAQAGALDLKRALMETLTCLRRGGADVIISYY---TPRVLEWLRE 298 (300)
Q Consensus 245 Y~vSgeY~~~r~Aa~~~~~n~~eal~E~~~~~~r~GAD~Ii~y~---A~~~ld~l~~ 298 (300)
-++|+. ..| ++|-..-.+++|+..+|+-+ +...++.|++
T Consensus 212 ~NiT~~--------------~~e-m~~ra~~a~~~G~~~~mv~~~~~G~~~~~~l~~ 253 (407)
T TIGR03332 212 VNLTGR--------------TFD-LKDKAKRAAELGADVLLFNVFAYGLDVLQSLAE 253 (407)
T ss_pred ecCCCC--------------HHH-HHHHHHHHHHhCCCEEEEeccccChHHHHHHHh
Confidence 444442 223 56666666678999998876 3445555554
No 211
>COG2040 MHT1 Homocysteine/selenocysteine methylase (S-methylmethionine-dependent) [Amino acid transport and metabolism]
Probab=49.63 E-value=15 Score=36.19 Aligned_cols=26 Identities=23% Similarity=0.290 Sum_probs=23.1
Q ss_pred CCCHHHHHHHHHHHHHHcCCCEEEec
Q psy15126 262 ALDLKRALMETLTCLRRGGADVIISY 287 (300)
Q Consensus 262 ~~n~~eal~E~~~~~~r~GAD~Ii~y 287 (300)
.++..|+++|...++.|+|||+|+|-
T Consensus 38 l~~~peiv~~vh~df~~aGa~ii~T~ 63 (300)
T COG2040 38 LVDEPEIVRNVHADFLRAGADIITTA 63 (300)
T ss_pred cccCHHHHHHHHHHHHHhcCcEEeeh
Confidence 45778999999999999999999974
No 212
>PF04898 Glu_syn_central: Glutamate synthase central domain; InterPro: IPR006982 Glutamate synthase (GltS)1 is a key enzyme in the early stages of the assimilation of ammonia in bacteria, yeasts, and plants. In bacteria, L-glutamate is involved in osmoregulation, is the precursor for other amino acids, and can be the precursor for haem biosynthesis. In plants, GltS is especially essential in the reassimilation of ammonia released by photorespiration. On the basis of the amino acid sequence and the nature of the electron donor, three different classes of GltS can de defined as follows: 1) ferredoxin-dependent GltS (Fd-GltS), 2) NADPH-dependent GltS (NADPH-GltS), and 3) NADH-dependent GltS (properties of the three classes have been reviewed extensively []). The enzyme is a complex iron-sulphur flavoprotein catalysing the reductive transfer of the amido nitrogen from L-glutamine to 2-oxoglutarate to form two molecules of L-glutamate via intramolecular channelling of ammonia from the amidotransferase domain to the FMN-binding domain. Reaction of amidotransferase domain: L-glutamine + H2O = L-glutamate + NH3 Reactions of FMN-binding domain: 2-oxoglutarate + NH3 = 2-iminoglutarate + H2O 2e + FMNox = FMNred 2-iminoglutarate + FMNred = L-glutamate + FMNox The central domain of glutamate synthase connects the N-terminal amidotransferase domain with the FMN-binding domain and has an alpha/beta overall topology [].; GO: 0015930 glutamate synthase activity, 0006807 nitrogen compound metabolic process, 0055114 oxidation-reduction process; PDB: 1EA0_A 2VDC_E 1OFE_A 1LLW_A 1OFD_A 1LLZ_A 1LM1_A.
Probab=49.58 E-value=31 Score=33.54 Aligned_cols=55 Identities=24% Similarity=0.300 Sum_probs=43.7
Q ss_pred ceecHHhHHHHHHHHHHHHHcCCCccccCCCCc----------chHHHHHHHHhhCCCCCCcccc
Q psy15126 57 SIHYEKTLKRLADISKAFSDAGAHIVAPSDMMD----------NRIHAIKQSLFTSRQSSTTGLL 111 (300)
Q Consensus 57 ~i~nd~Tl~~l~~~A~~~A~aGad~vAPSdmMD----------grv~air~aLd~~g~~~~v~Im 111 (300)
.-.-+..|++|.++|..+++.|+.++-.||--- --|+++.+.|.+.|++.+++|+
T Consensus 134 ~~~L~~aL~~l~~ea~~Av~~G~~ilILsDr~~~~~~~~IP~lLAv~avh~~Li~~glR~~~slI 198 (287)
T PF04898_consen 134 DEGLEEALDRLCEEAEAAVREGANILILSDRNASPDRAPIPSLLAVSAVHHHLIREGLRTRVSLI 198 (287)
T ss_dssp TTCHHHHHHHHHHHHHHHHHCT-SEEEEESTC-CTTEEE--HHHHHHHHHHHHHCTT-CCC-EEE
T ss_pred hhHHHHHHHHHHHHHHHHHHcCCcEEEECCCCCCcCcccccHHHHHHHHHHHHHHcCCcceeeEE
Confidence 344678899999999999999999999987654 2488999999999998887776
No 213
>PRK08385 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=49.50 E-value=59 Score=31.31 Aligned_cols=61 Identities=16% Similarity=0.153 Sum_probs=48.9
Q ss_pred HHHHHHHHHHhCCCcEEEeeecCCCCCCCCcceeeCCCCceecHHhHHHHHHHHHHHHHcCCCccccCCCCcchHHHHHH
Q psy15126 18 LFQVIPMIRKQFPSLTIACDVCLCGYTSHGHCAIFNEDGSIHYEKTLKRLADISKAFSDAGAHIVAPSDMMDNRIHAIKQ 97 (300)
Q Consensus 18 ~~~~i~~ik~~~p~l~i~~Dvclc~yt~hGHcgi~~~~g~i~nd~Tl~~l~~~A~~~A~aGad~vAPSdmMDgrv~air~ 97 (300)
+.++++.+|+..|+.-|...|. | .++++.++++|+|+|-.--|....+..+.+
T Consensus 169 i~~av~~~r~~~~~~kIeVEv~-----------------------~----leea~~a~~agaDiI~LDn~~~e~l~~~v~ 221 (278)
T PRK08385 169 LEEAIRRAKEFSVYKVVEVEVE-----------------------S----LEDALKAAKAGADIIMLDNMTPEEIREVIE 221 (278)
T ss_pred HHHHHHHHHHhCCCCcEEEEeC-----------------------C----HHHHHHHHHcCcCEEEECCCCHHHHHHHHH
Confidence 7789999999888755543332 2 457788899999999999999999999999
Q ss_pred HHhhCCCC
Q psy15126 98 SLFTSRQS 105 (300)
Q Consensus 98 aLd~~g~~ 105 (300)
.+++.|+.
T Consensus 222 ~l~~~~~~ 229 (278)
T PRK08385 222 ALKREGLR 229 (278)
T ss_pred HHHhcCcC
Confidence 99888873
No 214
>PRK09468 ompR osmolarity response regulator; Provisional
Probab=49.35 E-value=1.6e+02 Score=24.96 Aligned_cols=49 Identities=16% Similarity=0.293 Sum_probs=31.8
Q ss_pred hcCCceeeccCcch---HHHHHHHHHhhCCCCCEEeEecccccHHHHHHHhC
Q psy15126 212 SQGADFLMVKPALP---YLDIISEVKSRHPAYPLFVYQVSGEYAMLAFAAQA 260 (300)
Q Consensus 212 ~~GADivmVkPsmm---~ld~Ir~~~d~~~~vpi~aY~vSgeY~~~r~Aa~~ 260 (300)
+...|+|++-..++ -++.++.++...+++||+.-+....-.....+.+.
T Consensus 47 ~~~~dlvild~~l~~~~g~~~~~~lr~~~~~~pii~ls~~~~~~~~~~~l~~ 98 (239)
T PRK09468 47 RESFHLMVLDLMLPGEDGLSICRRLRSQNNPTPIIMLTAKGEEVDRIVGLEI 98 (239)
T ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHhcCCCCCEEEEECCCcHHHHHHHHhc
Confidence 35579998875543 67888888877778999987653333333333333
No 215
>cd00952 CHBPH_aldolase Trans-o-hydroxybenzylidenepyruvate hydratase-aldolase (HBPHA) and trans-2'-carboxybenzalpyruvate hydratase-aldolase (CBPHA). HBPHA catalyzes HBP to salicyaldehyde and pyruvate. This reaction is part of the degradative pathways for naphthalene and naphthalenesulfonates by bacteria. CBPHA is homologous to HBPHA and catalyzes the cleavage of CBP to 2-carboxylbenzaldehyde and pyruvate during the degradation of phenanthrene. They are member of the DHDPS family of Schiff-base-dependent class I aldolases.
Probab=49.24 E-value=43 Score=31.89 Aligned_cols=37 Identities=19% Similarity=0.302 Sum_probs=27.0
Q ss_pred hhcCCceeeccCcc-h------HHHHHHHHHhhCCCCCEEeEec
Q psy15126 211 VSQGADFLMVKPAL-P------YLDIISEVKSRHPAYPLFVYQV 247 (300)
Q Consensus 211 a~~GADivmVkPsm-m------~ld~Ir~~~d~~~~vpi~aY~v 247 (300)
.+.|||.|||-|-. . -++.-+++.+..+++||+.|+.
T Consensus 100 ~~~Gad~vlv~~P~y~~~~~~~l~~yf~~va~a~~~lPv~iYn~ 143 (309)
T cd00952 100 LDLGADGTMLGRPMWLPLDVDTAVQFYRDVAEAVPEMAIAIYAN 143 (309)
T ss_pred HHhCCCEEEECCCcCCCCCHHHHHHHHHHHHHhCCCCcEEEEcC
Confidence 56799998887642 1 3566666777654699999988
No 216
>PRK14041 oxaloacetate decarboxylase; Provisional
Probab=49.15 E-value=67 Score=33.06 Aligned_cols=46 Identities=22% Similarity=0.396 Sum_probs=31.7
Q ss_pred hHHHHHHHHHhhhcccccCCCCCccccchhhhcCCceeeccCc--ch----HHHHHHHHHhhCCCCCEEeE
Q psy15126 181 TLKRLADISKAFSDAVYVPNHNTDRFQARDVSQGADFLMVKPA--LP----YLDIISEVKSRHPAYPLFVY 245 (300)
Q Consensus 181 tl~~l~~~a~~~a~~~~~~~~n~~~~~~~Da~~GADivmVkPs--mm----~ld~Ir~~~d~~~~vpi~aY 245 (300)
|++.+.+.+... .++|||.|-+|=. ++ --..++.+++++ ++||-.+
T Consensus 151 t~e~~~~~a~~l------------------~~~Gad~I~i~Dt~G~l~P~~v~~Lv~~lk~~~-~vpI~~H 202 (467)
T PRK14041 151 TLEYYLEFAREL------------------VDMGVDSICIKDMAGLLTPKRAYELVKALKKKF-GVPVEVH 202 (467)
T ss_pred CHHHHHHHHHHH------------------HHcCCCEEEECCccCCcCHHHHHHHHHHHHHhc-CCceEEE
Confidence 577777777765 6789999966654 22 356677777777 4887544
No 217
>TIGR00343 pyridoxal 5'-phosphate synthase, synthase subunit Pdx1. This protein had been believed to be a singlet oxygen resistance protein. Subsequent work showed that it is a protein of pyridoxine (vitamin B6) biosynthesis, and that pyridoxine quenches the highly toxic singlet form of oxygen produced by light in the presence of certain chemicals.
Probab=48.86 E-value=38 Score=33.14 Aligned_cols=53 Identities=25% Similarity=0.274 Sum_probs=39.3
Q ss_pred hhcCCceeeccCcc---hHHHHHHHHHhhCCCCCEEeEecccccHHHHHHHhCCCCCHHHHHHHHHHHHHHcCCCEEEec
Q psy15126 211 VSQGADFLMVKPAL---PYLDIISEVKSRHPAYPLFVYQVSGEYAMLAFAAQAGALDLKRALMETLTCLRRGGADVIISY 287 (300)
Q Consensus 211 a~~GADivmVkPsm---m~ld~Ir~~~d~~~~vpi~aY~vSgeY~~~r~Aa~~~~~n~~eal~E~~~~~~r~GAD~Ii~y 287 (300)
.+.|+|+| .=|. |--+.++..|..| ++|+|+= ..|.. |.+..+ ++|||||=|+
T Consensus 86 ~~~GvDiI--DeTe~lrPade~~~~~K~~f-~vpfmad----------------~~~l~----EAlrai-~~GadmI~Tt 141 (287)
T TIGR00343 86 EALGVDYI--DESEVLTPADWTFHIDKKKF-KVPFVCG----------------ARDLG----EALRRI-NEGAAMIRTK 141 (287)
T ss_pred HHcCCCEE--EccCCCCcHHHHHHHHHHHc-CCCEEcc----------------CCCHH----HHHHHH-HCCCCEEecc
Confidence 58999999 5442 2346677778888 8999975 34664 455677 6999999999
No 218
>cd04727 pdxS PdxS is a subunit of the pyridoxal 5'-phosphate (PLP) synthase, an important enzyme in deoxyxylulose 5-phosphate (DXP)-independent pathway for de novo biosynthesis of PLP, present in some eubacteria, in archaea, fungi, plants, plasmodia, and some metazoa. Together with PdxT, PdxS forms the PLP synthase, a heteromeric glutamine amidotransferase (GATase), whereby PdxT produces ammonia from glutamine and PdxS combines ammonia with five- and three-carbon phosphosugars to form PLP. PLP is the biologically active form of vitamin B6, an essential cofactor in many biochemical processes. PdxS subunits form two hexameric rings.
Probab=48.75 E-value=45 Score=32.57 Aligned_cols=54 Identities=24% Similarity=0.265 Sum_probs=39.8
Q ss_pred hhcCCceeec---cCcch----------HHHHHHHHHhhCCCCCEEeEecccccHHHHHHHhCCCCCHHHHHHHHHHHHH
Q psy15126 211 VSQGADFLMV---KPALP----------YLDIISEVKSRHPAYPLFVYQVSGEYAMLAFAAQAGALDLKRALMETLTCLR 277 (300)
Q Consensus 211 a~~GADivmV---kPsmm----------~ld~Ir~~~d~~~~vpi~aY~vSgeY~~~r~Aa~~~~~n~~eal~E~~~~~~ 277 (300)
-++||=-||| -||.+ -..-|+++++.. ++||+.=- +.|+ +.|+..-.
T Consensus 25 e~aga~~v~~~~~~~~~~~~~~~v~R~~~~~~I~~Ik~~V-~iPVIGi~------------K~~~------~~Ea~~L~- 84 (283)
T cd04727 25 EEAGAVAVMALERVPADIRAAGGVARMADPKMIKEIMDAV-SIPVMAKV------------RIGH------FVEAQILE- 84 (283)
T ss_pred HHcCceEEeeeccCchhhhhcCCeeecCCHHHHHHHHHhC-CCCeEEee------------ehhH------HHHHHHHH-
Confidence 5799999999 56654 378899999985 89999851 1222 56666555
Q ss_pred HcCCCEE
Q psy15126 278 RGGADVI 284 (300)
Q Consensus 278 r~GAD~I 284 (300)
++|+|+|
T Consensus 85 eaGvDiI 91 (283)
T cd04727 85 ALGVDMI 91 (283)
T ss_pred HcCCCEE
Confidence 7999998
No 219
>TIGR00222 panB 3-methyl-2-oxobutanoate hydroxymethyltransferase. Members of this family are 3-methyl-2-oxobutanoate hydroxymethyltransferase, the first enzyme of the pantothenate biosynthesis pathway. An alternate name is ketopantoate hydroxymethyltransferase.
Probab=48.60 E-value=20 Score=34.31 Aligned_cols=41 Identities=22% Similarity=0.237 Sum_probs=31.6
Q ss_pred cHHhHHHHHHHHHHHHHcCCCccccCCCCcchHHHHHHHHh
Q psy15126 60 YEKTLKRLADISKAFSDAGAHIVAPSDMMDNRIHAIKQSLF 100 (300)
Q Consensus 60 nd~Tl~~l~~~A~~~A~aGad~vAPSdmMDgrv~air~aLd 100 (300)
.+...+++.+.|+.+.+|||+.+-+-..-..-.+.|.+.|.
T Consensus 155 t~~~a~~~i~~A~a~e~AGA~~ivlE~vp~~~a~~It~~l~ 195 (263)
T TIGR00222 155 DEEAAKKLLEDALALEEAGAQLLVLECVPVELAAKITEALA 195 (263)
T ss_pred CHHHHHHHHHHHHHHHHcCCCEEEEcCCcHHHHHHHHHhCC
Confidence 35567899999999999999999886666555555655554
No 220
>cd02072 Glm_B12_BD B12 binding domain of glutamate mutase (Glm). Glutamate mutase catalysis the conversion of (S)-glutamate with (2S,3S)-3-methylaspartate. The rearrangement reaction is initiated by the extraction of a hydrogen from the protein-bound substrate by a 5'-desoxyadenosyl radical, which is generated by the homolytic cleavage of the organometallic bond of the cofactor B12. Glm is a heterotetrameric molecule consisting of two alpha and two epsilon polypeptide chains.
Probab=48.36 E-value=24 Score=30.30 Aligned_cols=48 Identities=8% Similarity=0.025 Sum_probs=37.0
Q ss_pred cHHhHHHHHHHHHHHHHcCCCccccCCCCcchHH---HHHHHHhhCCCCCCcccc
Q psy15126 60 YEKTLKRLADISKAFSDAGAHIVAPSDMMDNRIH---AIKQSLFTSRQSSTTGLL 111 (300)
Q Consensus 60 nd~Tl~~l~~~A~~~A~aGad~vAPSdmMDgrv~---air~aLd~~g~~~~v~Im 111 (300)
.+.|.+.+++.|+. .++|+|+.|.+|-.... .+.+.|.++|+ .++.||
T Consensus 35 ~~v~~e~~v~aa~~---~~adiVglS~L~t~~~~~~~~~~~~l~~~gl-~~v~vi 85 (128)
T cd02072 35 VLSPQEEFIDAAIE---TDADAILVSSLYGHGEIDCKGLREKCDEAGL-KDILLY 85 (128)
T ss_pred CCCCHHHHHHHHHH---cCCCEEEEeccccCCHHHHHHHHHHHHHCCC-CCCeEE
Confidence 46678888887764 49999999999988754 45667888999 567776
No 221
>KOG1579|consensus
Probab=48.17 E-value=18 Score=35.89 Aligned_cols=22 Identities=27% Similarity=0.350 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHcCCCEEEec
Q psy15126 266 KRALMETLTCLRRGGADVIISY 287 (300)
Q Consensus 266 ~eal~E~~~~~~r~GAD~Ii~y 287 (300)
.|++.+..+++.|+|||+|+|-
T Consensus 52 Pe~V~~~H~efL~aGadIi~T~ 73 (317)
T KOG1579|consen 52 PEAVEQVHKEFLRAGADIISTN 73 (317)
T ss_pred hHHHHHHHHHHHHccCcEEEEe
Confidence 6899999999999999999873
No 222
>PF00682 HMGL-like: HMGL-like of this family is not conserved in other members. are a sub-families of this Pfam.; InterPro: IPR000891 Pyruvate carboxylase (6.4.1.1 from EC) (PC), a member of the biotin-dependent enzyme family, is involved in the gluconeogenesis by mediating the carboxylation of pyruvate to oxaloacetate. Biotin-dependent carboxylase enzymes perform a two step reaction. Enzyme-bound biotin is first carboxylated by bicarbonate and ATP and the carboxyl group temporarily bound to biotin is subsequently transferred to an acceptor substrate such as pyruvate []. PC has three functional domains: a biotin carboxylase (BC) domain, a carboxyltransferase (CT) domain which perform the second part of the reaction and a biotinyl domain [, ]. The mechanism by which the carboxyl group is transferred from the carboxybiotin to the pyruvate is not well understood. The pyruvate carboxyltransferase domain is also found in other pyruvate binding enzymes and acetyl-CoA dependent enzymes suggesting that this domain can be associated with different enzymatic activities. This domain is found towards the N-terminal region of various aldolase enzymes. This N-terminal TIM barrel domain [] interacts with the C-terminal domain. The C-terminal DmpG_comm domain (IPR012425 from INTERPRO) is thought to promote heterodimerisation with members of IPR003361 from INTERPRO to form a bifunctional aldolase-dehydrogenase []. ; GO: 0003824 catalytic activity; PDB: 3MP5_E 3MP3_E 2CW6_E 3MP4_D 3HBL_A 3HB9_C 3HO8_A 3BG5_C 1YDN_B 3RMJ_A ....
Probab=47.75 E-value=95 Score=27.59 Aligned_cols=59 Identities=24% Similarity=0.509 Sum_probs=36.8
Q ss_pred hhcCCceeeccCc--c--h--HHHHHHHHHhhCCCCCEEeEecccccHHHHHHHhCCCCCHHHHHHHHHHHHHHcCCCEE
Q psy15126 211 VSQGADFLMVKPA--L--P--YLDIISEVKSRHPAYPLFVYQVSGEYAMLAFAAQAGALDLKRALMETLTCLRRGGADVI 284 (300)
Q Consensus 211 a~~GADivmVkPs--m--m--~ld~Ir~~~d~~~~vpi~aY~vSgeY~~~r~Aa~~~~~n~~eal~E~~~~~~r~GAD~I 284 (300)
.+.|+|.|.++=+ . | .-+.++.+++.++++||- ++.-.-+|+ |+--++..+ ++|||.|
T Consensus 147 ~~~g~~~i~l~Dt~G~~~P~~v~~lv~~~~~~~~~~~l~-~H~Hnd~Gl--------------a~An~laA~-~aGa~~i 210 (237)
T PF00682_consen 147 AEAGADIIYLADTVGIMTPEDVAELVRALREALPDIPLG-FHAHNDLGL--------------AVANALAAL-EAGADRI 210 (237)
T ss_dssp HHHT-SEEEEEETTS-S-HHHHHHHHHHHHHHSTTSEEE-EEEBBTTS---------------HHHHHHHHH-HTT-SEE
T ss_pred HHcCCeEEEeeCccCCcCHHHHHHHHHHHHHhccCCeEE-EEecCCccc--------------hhHHHHHHH-HcCCCEE
Confidence 5679999977744 2 2 568888888888876554 455555554 334455666 6888886
Q ss_pred E
Q psy15126 285 I 285 (300)
Q Consensus 285 i 285 (300)
=
T Consensus 211 d 211 (237)
T PF00682_consen 211 D 211 (237)
T ss_dssp E
T ss_pred E
Confidence 3
No 223
>PRK12581 oxaloacetate decarboxylase; Provisional
Probab=47.18 E-value=82 Score=32.61 Aligned_cols=46 Identities=28% Similarity=0.421 Sum_probs=31.7
Q ss_pred hHHHHHHHHHhhhcccccCCCCCccccchhhhcCCceeeccCc--ch----HHHHHHHHHhhCCCCCEEeE
Q psy15126 181 TLKRLADISKAFSDAVYVPNHNTDRFQARDVSQGADFLMVKPA--LP----YLDIISEVKSRHPAYPLFVY 245 (300)
Q Consensus 181 tl~~l~~~a~~~a~~~~~~~~n~~~~~~~Da~~GADivmVkPs--mm----~ld~Ir~~~d~~~~vpi~aY 245 (300)
|++.+.+.+... .+.|||.|.+|=. ++ --+.++.+++ .+++||-.+
T Consensus 161 t~~y~~~~a~~l------------------~~~Gad~I~IkDtaG~l~P~~v~~Lv~alk~-~~~~pi~~H 212 (468)
T PRK12581 161 TLNYYLSLVKEL------------------VEMGADSICIKDMAGILTPKAAKELVSGIKA-MTNLPLIVH 212 (468)
T ss_pred cHHHHHHHHHHH------------------HHcCCCEEEECCCCCCcCHHHHHHHHHHHHh-ccCCeEEEE
Confidence 778888887775 6889999977754 22 3556666665 457887544
No 224
>PRK11475 DNA-binding transcriptional activator BglJ; Provisional
Probab=46.92 E-value=58 Score=29.26 Aligned_cols=34 Identities=12% Similarity=0.083 Sum_probs=26.1
Q ss_pred CCceee---ccCc---chHHHHHHHHHhhCCCCCEEeEec
Q psy15126 214 GADFLM---VKPA---LPYLDIISEVKSRHPAYPLFVYQV 247 (300)
Q Consensus 214 GADivm---VkPs---mm~ld~Ir~~~d~~~~vpi~aY~v 247 (300)
-.|+++ .-+. +.=++.+++++..+|++||..++.
T Consensus 37 ~pd~vl~dl~d~~mp~~~Gl~~~~~l~~~~p~~~iIvlt~ 76 (207)
T PRK11475 37 SFSAVIFSLSAMRSERREGLSCLTELAIKFPRMRRLVIAD 76 (207)
T ss_pred CCCEEEeeccccCCCCCCHHHHHHHHHHHCCCCCEEEEeC
Confidence 357775 3544 446899999999999999999954
No 225
>cd00564 TMP_TenI Thiamine monophosphate synthase (TMP synthase)/TenI. TMP synthase catalyzes an important step in the thiamine biosynthesis pathway, the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl) thiazole phosphate to yield thiamine phosphate. TenI is a enzymatically inactive regulatory protein involved in the regulation of several extracellular enzymes. This superfamily also contains other enzymatically inactive proteins with unknown functions.
Probab=46.25 E-value=92 Score=25.91 Aligned_cols=58 Identities=19% Similarity=0.257 Sum_probs=37.6
Q ss_pred hhcCCceeeccCc----------c-hHHHHHHHHHhhCCCCCEEeEecccccHHHHHHHhCCCCCHHHHHHHHHHHHHHc
Q psy15126 211 VSQGADFLMVKPA----------L-PYLDIISEVKSRHPAYPLFVYQVSGEYAMLAFAAQAGALDLKRALMETLTCLRRG 279 (300)
Q Consensus 211 a~~GADivmVkPs----------m-m~ld~Ir~~~d~~~~vpi~aY~vSgeY~~~r~Aa~~~~~n~~eal~E~~~~~~r~ 279 (300)
.+.|+|.|++.|- . .-++.++++++. .++||++-. -++. |.+..+++.
T Consensus 112 ~~~g~d~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~pv~a~G---------------Gi~~-----~~i~~~~~~ 170 (196)
T cd00564 112 EELGADYVGFGPVFPTPTKPGAGPPLGLELLREIAEL-VEIPVVAIG---------------GITP-----ENAAEVLAA 170 (196)
T ss_pred hhcCCCEEEECCccCCCCCCCCCCCCCHHHHHHHHHh-CCCCEEEEC---------------CCCH-----HHHHHHHHc
Confidence 4679999987542 1 146778888776 479988763 2343 234445567
Q ss_pred CCCEEEecch
Q psy15126 280 GADVIISYYT 289 (300)
Q Consensus 280 GAD~Ii~y~A 289 (300)
|||.|.+-.+
T Consensus 171 Ga~~i~~g~~ 180 (196)
T cd00564 171 GADGVAVISA 180 (196)
T ss_pred CCCEEEEehH
Confidence 9998876543
No 226
>cd04729 NanE N-acetylmannosamine-6-phosphate epimerase (NanE) converts N-acetylmannosamine-6-phosphate to N-acetylglucosamine-6-phosphate. This reaction is part of the pathway that allows the usage of sialic acid as a carbohydrate source. Sialic acids are a family of related sugars that are found as a component of glycoproteins, gangliosides, and other sialoglycoconjugates.
Probab=46.01 E-value=1.3e+02 Score=26.78 Aligned_cols=88 Identities=14% Similarity=0.123 Sum_probs=50.7
Q ss_pred hHHHHHHHHHhhhccc-ccCCCCCccccchhhhcCCceeeccCc----------chHHHHHHHHHhhCCCCCEEeEeccc
Q psy15126 181 TLKRLADISKAFSDAV-YVPNHNTDRFQARDVSQGADFLMVKPA----------LPYLDIISEVKSRHPAYPLFVYQVSG 249 (300)
Q Consensus 181 tl~~l~~~a~~~a~~~-~~~~~n~~~~~~~Da~~GADivmVkPs----------mm~ld~Ir~~~d~~~~vpi~aY~vSg 249 (300)
+++.+.+.+...-+.. -++.++.++. ..-.++|+|+|.+.+. ..-++.++++++.+ ++|+++= +|
T Consensus 110 ~~~~~i~~~~~~g~~~iiv~v~t~~ea-~~a~~~G~d~i~~~~~g~t~~~~~~~~~~~~~l~~i~~~~-~ipvia~--GG 185 (219)
T cd04729 110 TLAELIKRIHEEYNCLLMADISTLEEA-LNAAKLGFDIIGTTLSGYTEETAKTEDPDFELLKELRKAL-GIPVIAE--GR 185 (219)
T ss_pred CHHHHHHHHHHHhCCeEEEECCCHHHH-HHHHHcCCCEEEccCccccccccCCCCCCHHHHHHHHHhc-CCCEEEe--CC
Confidence 4555555544443223 3344554443 4456789999976532 12467888888776 7998863 22
Q ss_pred ccHHHHHHHhCCCCCHHHHHHHHHHHHHHcCCCEEEecch
Q psy15126 250 EYAMLAFAAQAGALDLKRALMETLTCLRRGGADVIISYYT 289 (300)
Q Consensus 250 eY~~~r~Aa~~~~~n~~eal~E~~~~~~r~GAD~Ii~y~A 289 (300)
..+. |.+..+.+.|||.+++--+
T Consensus 186 ------------I~~~-----~~~~~~l~~GadgV~vGsa 208 (219)
T cd04729 186 ------------INSP-----EQAAKALELGADAVVVGSA 208 (219)
T ss_pred ------------CCCH-----HHHHHHHHCCCCEEEEchH
Confidence 2233 2222333579999998654
No 227
>PRK11815 tRNA-dihydrouridine synthase A; Provisional
Probab=45.77 E-value=1e+02 Score=29.86 Aligned_cols=34 Identities=18% Similarity=0.275 Sum_probs=24.7
Q ss_pred hhcCCceeeccCcc----------------hHHHHHHHHHhhCCCCCEEe
Q psy15126 211 VSQGADFLMVKPAL----------------PYLDIISEVKSRHPAYPLFV 244 (300)
Q Consensus 211 a~~GADivmVkPsm----------------m~ld~Ir~~~d~~~~vpi~a 244 (300)
.++|+|.|.|-+.. ...+.|+++++.++++||++
T Consensus 161 ~~aG~d~i~vh~Rt~~~~g~~~~~~~~~~~~~~~~i~~v~~~~~~iPVI~ 210 (333)
T PRK11815 161 AEAGCDTFIVHARKAWLKGLSPKENREIPPLDYDRVYRLKRDFPHLTIEI 210 (333)
T ss_pred HHhCCCEEEEcCCchhhcCCCccccccCCCcCHHHHHHHHHhCCCCeEEE
Confidence 57899999875421 14788888888776899865
No 228
>PRK10499 PTS system N,N'-diacetylchitobiose-specific transporter subunit IIB; Provisional
Probab=45.26 E-value=68 Score=26.28 Aligned_cols=57 Identities=25% Similarity=0.394 Sum_probs=38.8
Q ss_pred cCCceeeccCcch-HHHHHHHHHhhCCCCCEEeEecccccHHHHHHHhCCCCCHHHHHHHHHHHHHHcCCC
Q psy15126 213 QGADFLMVKPALP-YLDIISEVKSRHPAYPLFVYQVSGEYAMLAFAAQAGALDLKRALMETLTCLRRGGAD 282 (300)
Q Consensus 213 ~GADivmVkPsmm-~ld~Ir~~~d~~~~vpi~aY~vSgeY~~~r~Aa~~~~~n~~eal~E~~~~~~r~GAD 282 (300)
..+|+|++.|-.. .++-+++. .++.||..=. +-.|| ..|.++.|..++..++.+|+.
T Consensus 49 ~~~DviLl~Pqi~~~~~~i~~~---~~~~pV~~I~-~~~Yg---------~~dg~~vl~~a~~~~~~~~~~ 106 (106)
T PRK10499 49 QNADVVLLGPQIAYMLPEIQRL---LPNKPVEVID-SLLYG---------KVDGLGVLKAAVAAIKKAAAN 106 (106)
T ss_pred cCCCEEEECHHHHHHHHHHHhh---cCCCCEEEEC-hHhhh---------cCCHHHHHHHHHHHHHHhccC
Confidence 4679999999854 45555543 3346777642 34444 568888888888888777763
No 229
>COG5016 Pyruvate/oxaloacetate carboxyltransferase [Energy production and conversion]
Probab=45.21 E-value=69 Score=33.35 Aligned_cols=51 Identities=24% Similarity=0.434 Sum_probs=38.7
Q ss_pred hHHHHHHHHHhhhcccccCCCCCccccchhhhcCCceeeccCc--c--h--HHHHHHHHHhhCCCCCEEeEec--ccc
Q psy15126 181 TLKRLADISKAFSDAVYVPNHNTDRFQARDVSQGADFLMVKPA--L--P--YLDIISEVKSRHPAYPLFVYQV--SGE 250 (300)
Q Consensus 181 tl~~l~~~a~~~a~~~~~~~~n~~~~~~~Da~~GADivmVkPs--m--m--~ld~Ir~~~d~~~~vpi~aY~v--Sge 250 (300)
|++...++|..+ ++.|+|.|-+|=- + | --+.|+.+|+++ .+||-.+.- ||.
T Consensus 154 t~e~yv~~akel------------------~~~g~DSIciKDmaGlltP~~ayelVk~iK~~~-~~pv~lHtH~TsG~ 212 (472)
T COG5016 154 TLEYYVELAKEL------------------LEMGVDSICIKDMAGLLTPYEAYELVKAIKKEL-PVPVELHTHATSGM 212 (472)
T ss_pred cHHHHHHHHHHH------------------HHcCCCEEEeecccccCChHHHHHHHHHHHHhc-CCeeEEecccccch
Confidence 688888888887 7999999977753 2 2 357899999998 499887754 554
No 230
>KOG0564|consensus
Probab=45.03 E-value=30 Score=36.62 Aligned_cols=76 Identities=24% Similarity=0.387 Sum_probs=49.3
Q ss_pred eecccCCCCCCccccccCCCcccchHhHHHHHHHHHhhhcccccCCCCCccccchhhhcCCceeeccCcch-----HHHH
Q psy15126 155 AVCLCGYTSHGHCAIFNEDGSIHYEKTLKRLADISKAFSDAVYVPNHNTDRFQARDVSQGADFLMVKPALP-----YLDI 229 (300)
Q Consensus 155 dvclc~yt~hGHcgi~~~~g~i~nd~tl~~l~~~a~~~a~~~~~~~~n~~~~~~~Da~~GADivmVkPsmm-----~ld~ 229 (300)
.+|.-+|- -||+-.-++| ..+.|+.|-+- +++|||+| .--|. ++.-
T Consensus 149 ~IgVAgYP-Eghpe~~~~~----~~~Dl~yLk~K----------------------vdaGaDFI--iTQlFYd~e~flkf 199 (590)
T KOG0564|consen 149 CIGVAGYP-EGHPEAPSHD----YLADLPYLKEK----------------------VDAGADFI--ITQLFYDVETFLKF 199 (590)
T ss_pred EEEeccCC-CCCcCCcccc----hhhhhHHHHHh----------------------hcccchhh--hhhhhcCHHHHHHH
Confidence 35555775 7999755443 66667776655 79999999 44465 4666
Q ss_pred HHHHHhhCCCCCEEeEec-ccccHHHHHHHh
Q psy15126 230 ISEVKSRHPAYPLFVYQV-SGEYAMLAFAAQ 259 (300)
Q Consensus 230 Ir~~~d~~~~vpi~aY~v-SgeY~~~r~Aa~ 259 (300)
++..++.-.++||+.==- ---|..|+..++
T Consensus 200 v~~cR~~gi~~PIvPGIMPI~~Y~sf~R~~k 230 (590)
T KOG0564|consen 200 VKDCRAAGINVPIVPGIMPIQSYRSFLRIAK 230 (590)
T ss_pred HHHHHHhCCCCCcccccccchhHHHHHHHHH
Confidence 777777645677643211 235777887775
No 231
>PRK09958 DNA-binding transcriptional activator EvgA; Provisional
Probab=44.86 E-value=1.7e+02 Score=23.89 Aligned_cols=50 Identities=12% Similarity=0.276 Sum_probs=32.3
Q ss_pred hcCCceeeccCcch---HHHHHHHHHhhCCCCCEEeEecccccHHHHHHHhCC
Q psy15126 212 SQGADFLMVKPALP---YLDIISEVKSRHPAYPLFVYQVSGEYAMLAFAAQAG 261 (300)
Q Consensus 212 ~~GADivmVkPsmm---~ld~Ir~~~d~~~~vpi~aY~vSgeY~~~r~Aa~~~ 261 (300)
+...|+|++--.++ -++.++++.+.+++.|+...+....-.....+.+.|
T Consensus 43 ~~~~dlvi~d~~~~~~~g~~~~~~l~~~~~~~~ii~ls~~~~~~~~~~~~~~g 95 (204)
T PRK09958 43 TLKPDIVIIDVDIPGVNGIQVLETLRKRQYSGIIIIVSAKNDHFYGKHCADAG 95 (204)
T ss_pred ccCCCEEEEeCCCCCCCHHHHHHHHHhhCCCCeEEEEeCCCCHHHHHHHHHCC
Confidence 34578888765443 578888888777788998886544333334444443
No 232
>cd00950 DHDPS Dihydrodipicolinate synthase (DHDPS) is a key enzyme in lysine biosynthesis. It catalyzes the aldol condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a Schiff base formation between pyruvate and a lysine residue. The functional enzyme is a homotetramer consisting of a dimer of dimers. DHDPS is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways.
Probab=44.79 E-value=58 Score=29.96 Aligned_cols=36 Identities=19% Similarity=0.324 Sum_probs=27.5
Q ss_pred hhcCCceeeccCcch-------HHHHHHHHHhhCCCCCEEeEec
Q psy15126 211 VSQGADFLMVKPALP-------YLDIISEVKSRHPAYPLFVYQV 247 (300)
Q Consensus 211 a~~GADivmVkPsmm-------~ld~Ir~~~d~~~~vpi~aY~v 247 (300)
.+.|||.||+-|-.. .++..+++.+. .+.||+-|+.
T Consensus 92 ~~~G~d~v~~~~P~~~~~~~~~l~~~~~~ia~~-~~~pi~lYn~ 134 (284)
T cd00950 92 EKAGADAALVVTPYYNKPSQEGLYAHFKAIAEA-TDLPVILYNV 134 (284)
T ss_pred HHcCCCEEEEcccccCCCCHHHHHHHHHHHHhc-CCCCEEEEEC
Confidence 578999988886522 46667777776 5899999987
No 233
>TIGR00696 wecB_tagA_cpsF bacterial polymer biosynthesis proteins, WecB/TagA/CpsF family. The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.
Probab=44.77 E-value=61 Score=28.89 Aligned_cols=68 Identities=12% Similarity=0.062 Sum_probs=41.1
Q ss_pred hcCCceeeccCcchHHHH-HHHHHhhCCCCCEEeEecccccHHHHHHHhCCCCCHHHHHHHHHHHHHHcCCCEEEecchH
Q psy15126 212 SQGADFLMVKPALPYLDI-ISEVKSRHPAYPLFVYQVSGEYAMLAFAAQAGALDLKRALMETLTCLRRGGADVIISYYTP 290 (300)
Q Consensus 212 ~~GADivmVkPsmm~ld~-Ir~~~d~~~~vpi~aY~vSgeY~~~r~Aa~~~~~n~~eal~E~~~~~~r~GAD~Ii~y~A~ 290 (300)
+.|.-+..+.-.---++. .+.++++||++-|..+ +|.|.+- .+ .+....|.+.|||+|++--+.
T Consensus 46 ~~~~~vfllG~~~~v~~~~~~~l~~~yP~l~i~g~--~g~f~~~----------~~---~~i~~~I~~s~~dil~VglG~ 110 (177)
T TIGR00696 46 KEKLPIFLYGGKPDVLQQLKVKLIKEYPKLKIVGA--FGPLEPE----------ER---KAALAKIARSGAGIVFVGLGC 110 (177)
T ss_pred HcCCeEEEECCCHHHHHHHHHHHHHHCCCCEEEEE--CCCCChH----------HH---HHHHHHHHHcCCCEEEEEcCC
Confidence 445444444444333444 4444556999998876 6666421 12 345667777899999997766
Q ss_pred HHHH
Q psy15126 291 RVLE 294 (300)
Q Consensus 291 ~~ld 294 (300)
+-.+
T Consensus 111 PkQE 114 (177)
T TIGR00696 111 PKQE 114 (177)
T ss_pred cHhH
Confidence 5443
No 234
>PRK11083 DNA-binding response regulator CreB; Provisional
Probab=44.65 E-value=94 Score=25.70 Aligned_cols=50 Identities=18% Similarity=0.362 Sum_probs=33.2
Q ss_pred hcCCceeeccCcch---HHHHHHHHHhhCCCCCEEeEecccccHHHHHHHhCC
Q psy15126 212 SQGADFLMVKPALP---YLDIISEVKSRHPAYPLFVYQVSGEYAMLAFAAQAG 261 (300)
Q Consensus 212 ~~GADivmVkPsmm---~ld~Ir~~~d~~~~vpi~aY~vSgeY~~~r~Aa~~~ 261 (300)
+...|++++-..++ -++.+++++..++++|++..+..........+.+.|
T Consensus 45 ~~~~dlvl~d~~~~~~~g~~~~~~l~~~~~~~~ii~ls~~~~~~~~~~a~~~G 97 (228)
T PRK11083 45 QQPPDLVILDVGLPDISGFELCRQLLAFHPALPVIFLTARSDEVDRLVGLEIG 97 (228)
T ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHhhCCCCCEEEEEcCCcHHHHHHHhhcC
Confidence 34579988876544 678888888777889999986543333334444443
No 235
>TIGR00078 nadC nicotinate-nucleotide pyrophosphorylase. Synonym: quinolinate phosphoribosyltransferase (decarboxylating)
Probab=44.46 E-value=1.2e+02 Score=28.81 Aligned_cols=54 Identities=28% Similarity=0.280 Sum_probs=36.4
Q ss_pred hhcCCceeeccCcchHHHHHHHHHhhC-CCCCEEeEecccccHHHHHHHhCCCCCHHHHHHHHHHHHHHcCCCEEEe
Q psy15126 211 VSQGADFLMVKPALPYLDIISEVKSRH-PAYPLFVYQVSGEYAMLAFAAQAGALDLKRALMETLTCLRRGGADVIIS 286 (300)
Q Consensus 211 a~~GADivmVkPsmm~ld~Ir~~~d~~-~~vpi~aY~vSgeY~~~r~Aa~~~~~n~~eal~E~~~~~~r~GAD~Ii~ 286 (300)
+++|||+||+-| |+.+-++++.+.. ..+||.+= |-+|.+ -+..+.+.|+|.|-+
T Consensus 195 ~~~gaDyI~ld~--~~~e~lk~~v~~~~~~ipi~As---------------GGI~~~-----ni~~~a~~Gvd~Isv 249 (265)
T TIGR00078 195 AEAGADIIMLDN--MKPEEIKEAVQLLKGRVLLEAS---------------GGITLD-----NLEEYAETGVDVISS 249 (265)
T ss_pred HHcCCCEEEECC--CCHHHHHHHHHHhcCCCcEEEE---------------CCCCHH-----HHHHHHHcCCCEEEe
Confidence 679999999988 4556666666542 23776652 335643 344556789999987
No 236
>cd04722 TIM_phosphate_binding TIM barrel proteins share a structurally conserved phosphate binding motif and in general share an eight beta/alpha closed barrel structure. Specific for this family is the conserved phosphate binding site at the edges of strands 7 and 8. The phosphate comes either from the substrate, as in the case of inosine monophosphate dehydrogenase (IMPDH), or from ribulose-5-phosphate 3-epimerase (RPE) or from cofactors, like FMN.
Probab=44.36 E-value=85 Score=25.44 Aligned_cols=37 Identities=24% Similarity=0.310 Sum_probs=28.1
Q ss_pred hhcCCceeeccCcch-----HHHHHHHHHhhCCCCCEEeEec
Q psy15126 211 VSQGADFLMVKPALP-----YLDIISEVKSRHPAYPLFVYQV 247 (300)
Q Consensus 211 a~~GADivmVkPsmm-----~ld~Ir~~~d~~~~vpi~aY~v 247 (300)
.++|+|+|.|..+.+ ..+.++++++.+++.|+...-.
T Consensus 81 ~~~g~d~v~l~~~~~~~~~~~~~~~~~i~~~~~~~~v~~~~~ 122 (200)
T cd04722 81 RAAGADGVEIHGAVGYLAREDLELIRELREAVPDVKVVVKLS 122 (200)
T ss_pred HHcCCCEEEEeccCCcHHHHHHHHHHHHHHhcCCceEEEEEC
Confidence 578999999988864 3567777777766788887754
No 237
>PRK04147 N-acetylneuraminate lyase; Provisional
Probab=44.11 E-value=55 Score=30.60 Aligned_cols=36 Identities=19% Similarity=0.318 Sum_probs=27.0
Q ss_pred hhcCCceeeccCcch-------HHHHHHHHHhhCCCCCEEeEec
Q psy15126 211 VSQGADFLMVKPALP-------YLDIISEVKSRHPAYPLFVYQV 247 (300)
Q Consensus 211 a~~GADivmVkPsmm-------~ld~Ir~~~d~~~~vpi~aY~v 247 (300)
.+.|||.|||-|-.- .++..+++.+.. +.||+.|+.
T Consensus 96 ~~~Gad~v~v~~P~y~~~~~~~l~~~f~~va~a~-~lPv~iYn~ 138 (293)
T PRK04147 96 TELGYDAISAVTPFYYPFSFEEICDYYREIIDSA-DNPMIVYNI 138 (293)
T ss_pred HHcCCCEEEEeCCcCCCCCHHHHHHHHHHHHHhC-CCCEEEEeC
Confidence 578999999988621 355666666664 699999987
No 238
>PRK14040 oxaloacetate decarboxylase; Provisional
Probab=43.95 E-value=98 Score=32.77 Aligned_cols=46 Identities=30% Similarity=0.468 Sum_probs=31.6
Q ss_pred hHHHHHHHHHhhhcccccCCCCCccccchhhhcCCceeeccCc--ch----HHHHHHHHHhhCCCCCEEeE
Q psy15126 181 TLKRLADISKAFSDAVYVPNHNTDRFQARDVSQGADFLMVKPA--LP----YLDIISEVKSRHPAYPLFVY 245 (300)
Q Consensus 181 tl~~l~~~a~~~a~~~~~~~~n~~~~~~~Da~~GADivmVkPs--mm----~ld~Ir~~~d~~~~vpi~aY 245 (300)
|++.+.+.+... .++|||.|-+|=. .+ --+.++.+++.+ ++||-.+
T Consensus 153 ~~~~~~~~a~~l------------------~~~Gad~i~i~Dt~G~l~P~~~~~lv~~lk~~~-~~pi~~H 204 (593)
T PRK14040 153 TLQTWVDLAKQL------------------EDMGVDSLCIKDMAGLLKPYAAYELVSRIKKRV-DVPLHLH 204 (593)
T ss_pred CHHHHHHHHHHH------------------HHcCCCEEEECCCCCCcCHHHHHHHHHHHHHhc-CCeEEEE
Confidence 577777777665 5789999966654 22 356777777776 6887543
No 239
>PRK09390 fixJ response regulator FixJ; Provisional
Probab=43.55 E-value=1.1e+02 Score=24.22 Aligned_cols=48 Identities=15% Similarity=0.294 Sum_probs=31.9
Q ss_pred cCCceeeccCcch---HHHHHHHHHhhCCCCCEEeEecccccHHHHHHHhC
Q psy15126 213 QGADFLMVKPALP---YLDIISEVKSRHPAYPLFVYQVSGEYAMLAFAAQA 260 (300)
Q Consensus 213 ~GADivmVkPsmm---~ld~Ir~~~d~~~~vpi~aY~vSgeY~~~r~Aa~~ 260 (300)
...|+|++-..++ -++.++.+++.++++|++..+....-.....+.+.
T Consensus 46 ~~~d~ii~d~~~~~~~~~~~~~~l~~~~~~~~ii~l~~~~~~~~~~~~~~~ 96 (202)
T PRK09390 46 LRFGCVVTDVRMPGIDGIELLRRLKARGSPLPVIVMTGHGDVPLAVEAMKL 96 (202)
T ss_pred CCCCEEEEeCCCCCCcHHHHHHHHHhcCCCCCEEEEECCCCHHHHHHHHHc
Confidence 4468888875543 67888888877788999988654443444444443
No 240
>PRK10200 putative racemase; Provisional
Probab=43.54 E-value=88 Score=28.63 Aligned_cols=48 Identities=15% Similarity=0.063 Sum_probs=34.4
Q ss_pred CCCEEeEecccccHHHHHHHhCCCCCHHHHHHHHHHHHHHcCCCEEEe
Q psy15126 239 AYPLFVYQVSGEYAMLAFAAQAGALDLKRALMETLTCLRRGGADVIIS 286 (300)
Q Consensus 239 ~vpi~aY~vSgeY~~~r~Aa~~~~~n~~eal~E~~~~~~r~GAD~Ii~ 286 (300)
+.|.+.++....--....-.+.+|-+..+.|.|....+.++|||+|+.
T Consensus 34 ~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~l~~~~~~L~~~g~~~ivi 81 (230)
T PRK10200 34 HSAQLLLHSVDFHEIEECQRRGEWDKTGDILAEAALGLQRAGAEGIVL 81 (230)
T ss_pred CCCeEEEeCCChHHHHHHHHCCCcchHHHHHHHHHHHHHHcCCCEEEE
Confidence 467777765443333222233578889999999999999999999875
No 241
>TIGR03699 mena_SCO4550 menaquinone biosynthesis protein, SCO4550 family. members of this protein family are involved in menaquinone biosynthesis by an alternate pathway via futalosine.
Probab=43.45 E-value=1.2e+02 Score=28.77 Aligned_cols=51 Identities=27% Similarity=0.493 Sum_probs=31.3
Q ss_pred HHHHHHHHHhhCCCCCEEeEecccccHHHHHH-HhCCCCCHHHHHHHHHHHHHHcCCCEEE
Q psy15126 226 YLDIISEVKSRHPAYPLFVYQVSGEYAMLAFA-AQAGALDLKRALMETLTCLRRGGADVII 285 (300)
Q Consensus 226 ~ld~Ir~~~d~~~~vpi~aY~vSgeY~~~r~A-a~~~~~n~~eal~E~~~~~~r~GAD~Ii 285 (300)
+.+++|.+++.++++.+-+++ ..| +... ...|.. ..|.+..++++|.|.+-
T Consensus 107 ~~~li~~Ik~~~~~i~~~~~s-~~e---i~~~~~~~g~~-----~~e~l~~Lk~aG~~~~~ 158 (340)
T TIGR03699 107 YEDLFRAIKARFPHIHIHSFS-PVE---IVYIAKKEGLS-----LREVLERLKEAGLDSIP 158 (340)
T ss_pred HHHHHHHHHHHCCCcCCCCCC-HHH---HHHHhccCCCC-----HHHHHHHHHHcCCCcCC
Confidence 567999999887677665531 111 1111 133443 15788888889998663
No 242
>PRK12330 oxaloacetate decarboxylase; Provisional
Probab=43.30 E-value=3.8e+02 Score=28.07 Aligned_cols=83 Identities=12% Similarity=0.105 Sum_probs=52.6
Q ss_pred hhcCCceeeccCcchHHHHHHHHHhhC------CCCCEEeEec-ccccHHHHHHH-hCCCCCHHHHHHHHHHHHHHcCCC
Q psy15126 211 VSQGADFLMVKPALPYLDIISEVKSRH------PAYPLFVYQV-SGEYAMLAFAA-QAGALDLKRALMETLTCLRRGGAD 282 (300)
Q Consensus 211 a~~GADivmVkPsmm~ld~Ir~~~d~~------~~vpi~aY~v-SgeY~~~r~Aa-~~~~~n~~eal~E~~~~~~r~GAD 282 (300)
.+-|.|+-.+.+.--|+.-||+....| .++++.-||+ -|-|..++.-+ ++|..|+=+-++|-.-..++..-+
T Consensus 257 ~~tgiDl~~L~~i~~~~~~vr~~y~~~~~~~~~~d~~v~~~qiPGGm~snl~~Ql~~~g~~d~~~ev~~e~~~Vr~~lG~ 336 (499)
T PRK12330 257 YTTKLDMDRLLKIRDHFKKVRPKYKEFESKTTGVETEIFKSQIPGGMLSNMESQLKQQGAGDRMDEVLEEVPRVRKDAGY 336 (499)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHhcccccccCCCCccccCCCCCCchhhHHHHHHHcChhhHHHHHHHHHHHHHHHcCC
Confidence 344555542333333666666655332 5677888877 55566555544 578888755556666666678889
Q ss_pred EEEecchHHHH
Q psy15126 283 VIISYYTPRVL 293 (300)
Q Consensus 283 ~Ii~y~A~~~l 293 (300)
.++|-|..++.
T Consensus 337 ~~~VTP~Sqiv 347 (499)
T PRK12330 337 PPLVTPSSQIV 347 (499)
T ss_pred CCeeCChhHHH
Confidence 99999977654
No 243
>cd04729 NanE N-acetylmannosamine-6-phosphate epimerase (NanE) converts N-acetylmannosamine-6-phosphate to N-acetylglucosamine-6-phosphate. This reaction is part of the pathway that allows the usage of sialic acid as a carbohydrate source. Sialic acids are a family of related sugars that are found as a component of glycoproteins, gangliosides, and other sialoglycoconjugates.
Probab=43.01 E-value=1.3e+02 Score=26.69 Aligned_cols=55 Identities=22% Similarity=0.350 Sum_probs=34.4
Q ss_pred hhcCCceeecc------Cc-chHHHHHHHHHhhCCCCCEEeEecccccHHHHHHHhCCCCCHHHHHHHHHHHHHHcCCCE
Q psy15126 211 VSQGADFLMVK------PA-LPYLDIISEVKSRHPAYPLFVYQVSGEYAMLAFAAQAGALDLKRALMETLTCLRRGGADV 283 (300)
Q Consensus 211 a~~GADivmVk------Ps-mm~ld~Ir~~~d~~~~vpi~aY~vSgeY~~~r~Aa~~~~~n~~eal~E~~~~~~r~GAD~ 283 (300)
+++|||+|.+- |. ..-...++++++.. ++|++. . ..+.+++ .... ++|+|+
T Consensus 89 ~~aGad~I~~~~~~~~~p~~~~~~~~i~~~~~~g-~~~iiv-~---------------v~t~~ea----~~a~-~~G~d~ 146 (219)
T cd04729 89 AAAGADIIALDATDRPRPDGETLAELIKRIHEEY-NCLLMA-D---------------ISTLEEA----LNAA-KLGFDI 146 (219)
T ss_pred HHcCCCEEEEeCCCCCCCCCcCHHHHHHHHHHHh-CCeEEE-E---------------CCCHHHH----HHHH-HcCCCE
Confidence 68999988663 33 13456677777766 678775 1 2344443 2233 579999
Q ss_pred EEec
Q psy15126 284 IISY 287 (300)
Q Consensus 284 Ii~y 287 (300)
|.+.
T Consensus 147 i~~~ 150 (219)
T cd04729 147 IGTT 150 (219)
T ss_pred EEcc
Confidence 8764
No 244
>COG0626 MetC Cystathionine beta-lyases/cystathionine gamma-synthases [Amino acid transport and metabolism]
Probab=42.89 E-value=73 Score=32.23 Aligned_cols=37 Identities=27% Similarity=0.400 Sum_probs=30.3
Q ss_pred HHHHHHHHHhhhcccccCCCCCccccchhhhcCCcee
Q psy15126 182 LKRLADISKAFSDAVYVPNHNTDRFQARDVSQGADFL 218 (300)
Q Consensus 182 l~~l~~~a~~~a~~~~~~~~n~~~~~~~Da~~GADiv 218 (300)
++.+++.|..+--.|-|||.=-.-+..+=.+.|||||
T Consensus 168 I~~i~~~A~~~g~~vvVDNTfatP~~q~PL~~GaDIV 204 (396)
T COG0626 168 IPAIARLAKAYGALVVVDNTFATPVLQRPLELGADIV 204 (396)
T ss_pred HHHHHHHHHhcCCEEEEECCcccccccChhhcCCCEE
Confidence 6778888888765677888777778888899999999
No 245
>PF01791 DeoC: DeoC/LacD family aldolase; InterPro: IPR002915 This family includes the enzyme deoxyribose-phosphate aldolase, which is involved in nucleotide metabolism. 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde The family also includes a group of related bacterial proteins of unknown function, see examples Q57843 from SWISSPROT and P76143 from SWISSPROT.; GO: 0016829 lyase activity; PDB: 2A4A_A 1VCV_B 1P1X_A 1KTN_B 1JCL_A 1JCJ_A 1MZH_A 3GKF_D 3GLC_L 3GND_N ....
Probab=42.69 E-value=1.6e+02 Score=26.50 Aligned_cols=63 Identities=24% Similarity=0.391 Sum_probs=38.2
Q ss_pred hhcCCceeeccCcch--------HHHHHHHHHhhCCCCC----EEeEecccccHHHHHHHhCCCCCHH---HHHHHHHHH
Q psy15126 211 VSQGADFLMVKPALP--------YLDIISEVKSRHPAYP----LFVYQVSGEYAMLAFAAQAGALDLK---RALMETLTC 275 (300)
Q Consensus 211 a~~GADivmVkPsmm--------~ld~Ir~~~d~~~~vp----i~aY~vSgeY~~~r~Aa~~~~~n~~---eal~E~~~~ 275 (300)
++.|||+| |-+-. -+..++++.... .+| |..= .| .+.+ +.+.+++..
T Consensus 156 ~e~GaD~v--Kt~tg~~~~~t~~~~~~~~~~~~~~-~~p~~~~Vk~s--GG-------------i~~~~~~~~l~~a~~~ 217 (236)
T PF01791_consen 156 AELGADFV--KTSTGKPVGATPEDVELMRKAVEAA-PVPGKVGVKAS--GG-------------IDAEDFLRTLEDALEF 217 (236)
T ss_dssp HHTT-SEE--EEE-SSSSCSHHHHHHHHHHHHHTH-SSTTTSEEEEE--SS-------------SSHHHHHHSHHHHHHH
T ss_pred HHhCCCEE--EecCCccccccHHHHHHHHHHHHhc-CCCcceEEEEe--CC-------------CChHHHHHHHHHHHHH
Confidence 68999999 87643 577788887765 477 6653 12 1333 334444444
Q ss_pred HHHcCCCEEEecchHHH
Q psy15126 276 LRRGGADVIISYYTPRV 292 (300)
Q Consensus 276 ~~r~GAD~Ii~y~A~~~ 292 (300)
+ ++|||.+=+-.+..+
T Consensus 218 i-~aGa~~~G~~~Gr~i 233 (236)
T PF01791_consen 218 I-EAGADRIGTSSGRNI 233 (236)
T ss_dssp H-HTTHSEEEEEEHHHH
T ss_pred H-HcCChhHHHHHHHHH
Confidence 4 899988765555443
No 246
>TIGR01387 cztR_silR_copR heavy metal response regulator. Members of this family contain a response regulator receiver domain (Pfam:PF00072) and an associated transcriptional regulatory region (Pfam:PF00486). This group is separated phylogenetically from related proteins with similar architecture and contains a number of proteins associated with heavy metal resistance efflux systems for copper, silver, cadmium, and/or zinc. Most members encoded by genes adjacent to genes for encoding a member of the heavy metal sensor histidine kinase family (TIGRFAMs:TIGR01386), its partner in the two-component response regulator system.
Probab=42.58 E-value=1.1e+02 Score=25.07 Aligned_cols=49 Identities=12% Similarity=0.188 Sum_probs=33.9
Q ss_pred cCCceeeccCcc---hHHHHHHHHHhhCCCCCEEeEecccccHHHHHHHhCC
Q psy15126 213 QGADFLMVKPAL---PYLDIISEVKSRHPAYPLFVYQVSGEYAMLAFAAQAG 261 (300)
Q Consensus 213 ~GADivmVkPsm---m~ld~Ir~~~d~~~~vpi~aY~vSgeY~~~r~Aa~~~ 261 (300)
...|+|++-..+ .-++.+++++...+++||+..+....-.....+.+.|
T Consensus 41 ~~~dlvl~d~~~~~~~g~~~~~~l~~~~~~~~iivls~~~~~~~~~~~~~~G 92 (218)
T TIGR01387 41 DDYDLIILDVMLPGMDGWQILQTLRRSGKQTPVLFLTARDSVADKVKGLDLG 92 (218)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHccCCCCcEEEEEcCCCHHHHHHHHHcC
Confidence 446888876544 3688899888777789999986554444445555544
No 247
>PRK12653 fructose-6-phosphate aldolase; Reviewed
Probab=42.47 E-value=33 Score=31.81 Aligned_cols=92 Identities=22% Similarity=0.220 Sum_probs=53.2
Q ss_pred CCCCCChHHHHHHHHHHhCCCcEEEeeecCCCCCCCCccee--eCCCCceecHHhHHHHHHHHHHHHHcCCCcccc-CCC
Q psy15126 11 ADTPDNPLFQVIPMIRKQFPSLTIACDVCLCGYTSHGHCAI--FNEDGSIHYEKTLKRLADISKAFSDAGAHIVAP-SDM 87 (300)
Q Consensus 11 a~~~~~~~~~~i~~ik~~~p~l~i~~Dvclc~yt~hGHcgi--~~~~g~i~nd~Tl~~l~~~A~~~A~aGad~vAP-Sdm 87 (300)
+.+.++.+.+|.+ |.+..|+++| =-|-|-.|--.+ +...| |.--.|+---++||+..|++||+.|+| ..=
T Consensus 62 ~~d~e~mi~ea~~-l~~~~~ni~I-----KIP~T~~Gl~A~~~L~~~G-I~vn~T~vfs~~Qa~~Aa~aGa~yIspyvgR 134 (220)
T PRK12653 62 ATTAEGMVNDARK-LRSIIADIVV-----KVPVTAEGLAAIKMLKAEG-IPTLGTAVYGAAQGLLSALAGAEYVAPYVNR 134 (220)
T ss_pred cCCHHHHHHHHHH-HHHhCCCEEE-----EeCCCHHHHHHHHHHHHcC-CCeeEEEecCHHHHHHHHhcCCcEEEeecCh
Confidence 4455666666655 3455677544 136666653222 22233 222233333456889999999999999 111
Q ss_pred C-----c--chHHHHHHHHhhCCCCCCcccc
Q psy15126 88 M-----D--NRIHAIKQSLFTSRQSSTTGLL 111 (300)
Q Consensus 88 M-----D--grv~air~aLd~~g~~~~v~Im 111 (300)
| | ..+..+++.++..|+ ++-||
T Consensus 135 ~~~~g~dg~~~i~~i~~~~~~~~~--~tkIL 163 (220)
T PRK12653 135 IDAQGGSGIQTVTDLQQLLKMHAP--QAKVL 163 (220)
T ss_pred HhhcCCChHHHHHHHHHHHHhcCC--CcEEE
Confidence 1 1 246777777776666 45666
No 248
>TIGR01108 oadA oxaloacetate decarboxylase alpha subunit. This model describes the bacterial oxaloacetate decarboxylase alpha subunit and its equivalents in archaea. The oxaloacetate decarboxylase Na+ pump is the paradigm of the family of Na+ transport decarboxylases that present in bacteria and archaea. It a multi subunit enzyme consisting of a peripheral alpha-subunit and integral membrane subunits beta and gamma. The energy released by the decarboxylation reaction of oxaloacetate is coupled to Na+ ion pumping across the membrane.
Probab=42.35 E-value=95 Score=32.77 Aligned_cols=46 Identities=24% Similarity=0.512 Sum_probs=31.4
Q ss_pred hHHHHHHHHHhhhcccccCCCCCccccchhhhcCCceeeccCc--c--h--HHHHHHHHHhhCCCCCEEeE
Q psy15126 181 TLKRLADISKAFSDAVYVPNHNTDRFQARDVSQGADFLMVKPA--L--P--YLDIISEVKSRHPAYPLFVY 245 (300)
Q Consensus 181 tl~~l~~~a~~~a~~~~~~~~n~~~~~~~Da~~GADivmVkPs--m--m--~ld~Ir~~~d~~~~vpi~aY 245 (300)
|++.+.+.+... .++|||.|-+|=. . | --..++.++++++ +||-.+
T Consensus 147 ~~~~~~~~~~~~------------------~~~Gad~I~i~Dt~G~~~P~~v~~lv~~lk~~~~-~pi~~H 198 (582)
T TIGR01108 147 TLETYLDLAEEL------------------LEMGVDSICIKDMAGILTPKAAYELVSALKKRFG-LPVHLH 198 (582)
T ss_pred CHHHHHHHHHHH------------------HHcCCCEEEECCCCCCcCHHHHHHHHHHHHHhCC-CceEEE
Confidence 567777777665 6789999966643 1 2 3567777777774 887543
No 249
>cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of
Probab=42.34 E-value=93 Score=28.59 Aligned_cols=45 Identities=18% Similarity=0.208 Sum_probs=27.5
Q ss_pred HHHHHHHHhhCC-CCCEEeEecccccHHHHHHHhCCCCCHHHHHHHHHHHHHHcCCCEEEecchH
Q psy15126 227 LDIISEVKSRHP-AYPLFVYQVSGEYAMLAFAAQAGALDLKRALMETLTCLRRGGADVIISYYTP 290 (300)
Q Consensus 227 ld~Ir~~~d~~~-~vpi~aY~vSgeY~~~r~Aa~~~~~n~~eal~E~~~~~~r~GAD~Ii~y~A~ 290 (300)
++.++++++.++ ++||++=. |..+.+++ .| .+ ++|||.|++.-+.
T Consensus 230 ~~~v~~i~~~~~~~ipiia~G--------------GI~~~~da-~~---~l-~~GAd~V~vg~a~ 275 (289)
T cd02810 230 LRWVARLAARLQLDIPIIGVG--------------GIDSGEDV-LE---ML-MAGASAVQVATAL 275 (289)
T ss_pred HHHHHHHHHhcCCCCCEEEEC--------------CCCCHHHH-HH---HH-HcCccHheEcHHH
Confidence 566777777664 68887642 22333222 33 33 5799999987654
No 250
>cd01568 QPRTase_NadC Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other.
Probab=42.32 E-value=1.3e+02 Score=28.45 Aligned_cols=54 Identities=26% Similarity=0.379 Sum_probs=34.2
Q ss_pred hhcCCceeeccCcchHHHHHHHHHhh---CCCCCEEeEecccccHHHHHHHhCCCCCHHHHHHHHHHHHHHcCCCEEEe
Q psy15126 211 VSQGADFLMVKPALPYLDIISEVKSR---HPAYPLFVYQVSGEYAMLAFAAQAGALDLKRALMETLTCLRRGGADVIIS 286 (300)
Q Consensus 211 a~~GADivmVkPsmm~ld~Ir~~~d~---~~~vpi~aY~vSgeY~~~r~Aa~~~~~n~~eal~E~~~~~~r~GAD~Ii~ 286 (300)
+++|||+||+-|= +.+.++++.+. .+++||.+= |-+|. |.+..+...|||.|-+
T Consensus 198 ~~~gaD~I~ld~~--~~e~l~~~v~~i~~~~~i~i~as---------------GGIt~-----~ni~~~a~~Gad~Isv 254 (269)
T cd01568 198 LEAGADIIMLDNM--SPEELKEAVKLLKGLPRVLLEAS---------------GGITL-----ENIRAYAETGVDVIST 254 (269)
T ss_pred HHcCCCEEEECCC--CHHHHHHHHHHhccCCCeEEEEE---------------CCCCH-----HHHHHHHHcCCCEEEE
Confidence 5799999999773 33444443332 246776653 33564 3344566799999976
No 251
>PRK14042 pyruvate carboxylase subunit B; Provisional
Probab=41.67 E-value=66 Score=34.17 Aligned_cols=80 Identities=18% Similarity=0.142 Sum_probs=51.1
Q ss_pred hcCCceeeccCcchHHHHHHHHHhhC------CCCCEEeEec-ccccHHHHHHH-hCCCCCHHHHHHHHHHHHHHcCCCE
Q psy15126 212 SQGADFLMVKPALPYLDIISEVKSRH------PAYPLFVYQV-SGEYAMLAFAA-QAGALDLKRALMETLTCLRRGGADV 283 (300)
Q Consensus 212 ~~GADivmVkPsmm~ld~Ir~~~d~~------~~vpi~aY~v-SgeY~~~r~Aa-~~~~~n~~eal~E~~~~~~r~GAD~ 283 (300)
+-|-|+-.+.+--.|+..||+.-..| ++.-|.-||+ -|-|+-++.=+ ++|..|+=+.++|.....++..-+.
T Consensus 255 ~tgidl~~l~~~~~~~~~vr~~y~~~~~~~~~~~~~v~~hq~PGG~~snl~~Ql~~~g~~d~~~ev~~e~~~v~~~lG~~ 334 (596)
T PRK14042 255 DTELDLNILLEIDDYFKAVRKKYSQFESEAQNIDPRVQLYQVPGGMISNLYNQLKEQNALDKMDAVHKEIPRVRKDLGYP 334 (596)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHhhcCCccccCCcceeecCCCcchhhHHHHHHHHCCcHhHHHHHHHHHHHHHHHcCCC
Confidence 44555432233333677776655332 3555667777 67777666543 6788888666666677777888899
Q ss_pred EEecchHH
Q psy15126 284 IISYYTPR 291 (300)
Q Consensus 284 Ii~y~A~~ 291 (300)
++|-|..+
T Consensus 335 ~~VTP~Sq 342 (596)
T PRK14042 335 PLVTPTSQ 342 (596)
T ss_pred CeECCcCc
Confidence 99988654
No 252
>TIGR03700 mena_SCO4494 putative menaquinone biosynthesis protein, SCO4494 family. Members of this protein family appear to be involved in menaquinone biosynthesis by an alternate pathway via futalosine, based on close phylogenetic correlation with known markers of the futalosine pathway, gene clustering in many organisms, and paralogy with the SCO4550 protein.
Probab=41.61 E-value=1.1e+02 Score=29.68 Aligned_cols=52 Identities=25% Similarity=0.352 Sum_probs=34.8
Q ss_pred HHHHHHHHHhhCCCCCEEeEecccccHHHHHHHhCCCCCHHHHHHHHHHHHHHcCCCEEE
Q psy15126 226 YLDIISEVKSRHPAYPLFVYQVSGEYAMLAFAAQAGALDLKRALMETLTCLRRGGADVII 285 (300)
Q Consensus 226 ~ld~Ir~~~d~~~~vpi~aY~vSgeY~~~r~Aa~~~~~n~~eal~E~~~~~~r~GAD~Ii 285 (300)
+++++|.+++.+|++.+-++. ..|+..++.- .|.. ..|.+..++++|.|.+-
T Consensus 114 ~~e~i~~Ik~~~p~i~i~~~~-~~ei~~~~~~--~g~~-----~~e~l~~LkeAGld~~~ 165 (351)
T TIGR03700 114 YLDMIRTLKEAYPDLHVKAFT-AVEIHHFSKI--SGLP-----TEEVLDELKEAGLDSMP 165 (351)
T ss_pred HHHHHHHHHHHCCCceEEeCC-HHHHHHHHHH--cCCC-----HHHHHHHHHHcCCCcCC
Confidence 789999999999888888763 2344333321 2332 25667788888998764
No 253
>cd02803 OYE_like_FMN_family Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=41.49 E-value=2.5e+02 Score=26.22 Aligned_cols=61 Identities=18% Similarity=0.193 Sum_probs=33.3
Q ss_pred hHHHHHHHHHHhC---CCcEEEeeecCCCCCCCCcceeeCCCCceecHHhHHHHHHHHHHHHHcCCCcc
Q psy15126 17 PLFQVIPMIRKQF---PSLTIACDVCLCGYTSHGHCAIFNEDGSIHYEKTLKRLADISKAFSDAGAHIV 82 (300)
Q Consensus 17 ~~~~~i~~ik~~~---p~l~i~~Dvclc~yt~hGHcgi~~~~g~i~nd~Tl~~l~~~A~~~A~aGad~v 82 (300)
|-.+.+...++.- ..|+|.--+.+.+- ..+. ...-.+.+|..++.+-+.+-..-+.|+.++
T Consensus 31 ~~~~~~~~y~~ra~gg~glii~e~~~v~~~-~~~~----~~~~~~~~~~~~~~~~~~~~~vh~~g~~~~ 94 (327)
T cd02803 31 PTDELIEYYEERAKGGVGLIITEAAYVDPE-GKGY----PGQLGIYDDEQIPGLRKLTEAVHAHGAKIF 94 (327)
T ss_pred CCHHHHHHHHHHhCcCCcEEEECcEEEcCc-ccCC----CCCcCcCCHHHHHHHHHHHHHHHhCCCHhh
Confidence 5566666666554 23444433334332 1111 111235667778888887777777787654
No 254
>cd07945 DRE_TIM_CMS Leptospira interrogans citramalate synthase (CMS) and related proteins, N-terminal catalytic TIM barrel domain. Citramalate synthase (CMS) catalyzes the conversion of pyruvate and acetyl-CoA to (R)-citramalate in the first dedicated step of the citramalate pathway. Citramalate is only found in Leptospira interrogans and a few other microorganisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center con
Probab=41.33 E-value=1.5e+02 Score=28.12 Aligned_cols=42 Identities=17% Similarity=0.359 Sum_probs=28.1
Q ss_pred hhcCCceeeccCc--c--h--HHHHHHHHHhhCCCCCEEeEecccccHH
Q psy15126 211 VSQGADFLMVKPA--L--P--YLDIISEVKSRHPAYPLFVYQVSGEYAM 253 (300)
Q Consensus 211 a~~GADivmVkPs--m--m--~ld~Ir~~~d~~~~vpi~aY~vSgeY~~ 253 (300)
.++|+|.|-++=. . | .-+.++.+++.+|++|| .++.---+||
T Consensus 157 ~~~G~~~i~l~DT~G~~~P~~v~~l~~~l~~~~~~~~i-~~H~Hnd~Gl 204 (280)
T cd07945 157 SDLPIKRIMLPDTLGILSPFETYTYISDMVKRYPNLHF-DFHAHNDYDL 204 (280)
T ss_pred HHcCCCEEEecCCCCCCCHHHHHHHHHHHHhhCCCCeE-EEEeCCCCCH
Confidence 6789999866654 2 2 46777777777888886 4555444444
No 255
>PRK09483 response regulator; Provisional
Probab=41.12 E-value=2.1e+02 Score=23.70 Aligned_cols=50 Identities=20% Similarity=0.330 Sum_probs=33.9
Q ss_pred hcCCceeeccCcch---HHHHHHHHHhhCCCCCEEeEecccccHHHHHHHhCC
Q psy15126 212 SQGADFLMVKPALP---YLDIISEVKSRHPAYPLFVYQVSGEYAMLAFAAQAG 261 (300)
Q Consensus 212 ~~GADivmVkPsmm---~ld~Ir~~~d~~~~vpi~aY~vSgeY~~~r~Aa~~~ 261 (300)
+...|+|++-..++ -++.++.++..++++|+..++....-.....+.+.|
T Consensus 45 ~~~~dlvi~d~~~~~~~g~~~~~~l~~~~~~~~ii~ls~~~~~~~~~~~~~~g 97 (217)
T PRK09483 45 TNAVDVVLMDMNMPGIGGLEATRKILRYTPDVKIIMLTVHTENPLPAKVMQAG 97 (217)
T ss_pred hcCCCEEEEeCCCCCCCHHHHHHHHHHHCCCCeEEEEeCCCCHHHHHHHHHcC
Confidence 45679998876643 678888888778899999997643333334444443
No 256
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=41.08 E-value=37 Score=28.78 Aligned_cols=47 Identities=17% Similarity=0.232 Sum_probs=34.6
Q ss_pred HHhHHHHHHHHHHHHHcCCCccccCCCCcchH---HHHHHHHhhCCCCCCcccc
Q psy15126 61 EKTLKRLADISKAFSDAGAHIVAPSDMMDNRI---HAIKQSLFTSRQSSTTGLL 111 (300)
Q Consensus 61 d~Tl~~l~~~A~~~A~aGad~vAPSdmMDgrv---~air~aLd~~g~~~~v~Im 111 (300)
+.|.+..++.|+ +.++|+|..|.++.... ..+.+.|.+.|. .++.|+
T Consensus 39 ~~s~e~~v~aa~---e~~adii~iSsl~~~~~~~~~~~~~~L~~~g~-~~i~vi 88 (132)
T TIGR00640 39 FQTPEEIARQAV---EADVHVVGVSSLAGGHLTLVPALRKELDKLGR-PDILVV 88 (132)
T ss_pred CCCHHHHHHHHH---HcCCCEEEEcCchhhhHHHHHHHHHHHHhcCC-CCCEEE
Confidence 456777776665 67999999999887655 556667778888 566665
No 257
>cd07943 DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-terminal catalytic TIM barrel domain. 4-hydroxy 2-ketovalerate aldolase (Also known as 4-hydroxy-2-ketovalerate aldolase and 4-hydroxy-2-oxopentanoate aldolase (HOA)) converts 4-hydroxy-2-oxopentanoate to acetaldehyde and pyruvate, the penultimate step in the meta-cleavage pathway for the degradation of phenols, cresols and catechol. This family includes the Escherichia coli MhpE aldolase, the Pseudomonas DmpG aldolase, and the Burkholderia xenovorans BphI pyruvate aldolase. In Pseudomonas, the DmpG aldolase tightly associates with a dehydrogenase (DmpF ) and is inactive without it. HOA has a canonical TIM-barrel fold with a C-terminal extension that forms a funnel leading to the active site. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate
Probab=41.08 E-value=1.6e+02 Score=27.03 Aligned_cols=27 Identities=22% Similarity=0.427 Sum_probs=19.4
Q ss_pred eecHHhHHHHHHHHHHHHHcCCCcccc
Q psy15126 58 IHYEKTLKRLADISKAFSDAGAHIVAP 84 (300)
Q Consensus 58 i~nd~Tl~~l~~~A~~~A~aGad~vAP 84 (300)
.....|.+...+.+..+.++|++.|-.
T Consensus 15 ~~~~~~~~~k~~i~~~L~~~Gv~~iEv 41 (263)
T cd07943 15 VRHQFTLEQVRAIARALDAAGVPLIEV 41 (263)
T ss_pred CCeecCHHHHHHHHHHHHHcCCCEEEe
Confidence 344577777788888888888887644
No 258
>TIGR01305 GMP_reduct_1 guanosine monophosphate reductase, eukaryotic. A deep split separates two families of GMP reductase. This family includes both eukaryotic and some proteobacterial sequences, while the other family contains other bacterial sequences.
Probab=41.06 E-value=97 Score=31.13 Aligned_cols=58 Identities=22% Similarity=0.286 Sum_probs=39.4
Q ss_pred hhcCCceeecc--Ccc------------hHHHHHHHHHhh-C-CCCCEEeEecccccHHHHHHHhCCCCCHHHHHHHHHH
Q psy15126 211 VSQGADFLMVK--PAL------------PYLDIISEVKSR-H-PAYPLFVYQVSGEYAMLAFAAQAGALDLKRALMETLT 274 (300)
Q Consensus 211 a~~GADivmVk--Psm------------m~ld~Ir~~~d~-~-~~vpi~aY~vSgeY~~~r~Aa~~~~~n~~eal~E~~~ 274 (300)
+++|||.|.|. |+- +++.+|.++.+. . .++||++=. |..+. -.+.+
T Consensus 168 i~aGAD~ikVgiGpGSicttR~~~Gvg~pqltAv~~~a~aa~~~~v~VIaDG--------------GIr~~----gDI~K 229 (343)
T TIGR01305 168 ILSGADIVKVGIGPGSVCTTRTKTGVGYPQLSAVIECADAAHGLKGHIISDG--------------GCTCP----GDVAK 229 (343)
T ss_pred HHcCCCEEEEcccCCCcccCceeCCCCcCHHHHHHHHHHHhccCCCeEEEcC--------------CcCch----hHHHH
Confidence 67999999776 431 367777777765 2 378888752 33333 34556
Q ss_pred HHHHcCCCEEEec
Q psy15126 275 CLRRGGADVIISY 287 (300)
Q Consensus 275 ~~~r~GAD~Ii~y 287 (300)
.+ ..|||.+|.-
T Consensus 230 AL-A~GAd~VMlG 241 (343)
T TIGR01305 230 AF-GAGADFVMLG 241 (343)
T ss_pred HH-HcCCCEEEEC
Confidence 77 6999999975
No 259
>TIGR00674 dapA dihydrodipicolinate synthase. Dihydrodipicolinate synthase is a homotetrameric enzyme of lysine biosynthesis. E. coli has several paralogs closely related to dihydrodipicoline synthase (DapA), as well as the more distant N-acetylneuraminate lyase. In Pyrococcus horikoshii, the bidirectional best hit with E. coli is to an uncharacterized paralog of DapA, not DapA itself, and it is omitted from the seed. The putative members from the Chlamydias (pathogens with a parasitic metabolism) are easily the most divergent members of the multiple alignment.
Probab=41.03 E-value=73 Score=29.60 Aligned_cols=36 Identities=19% Similarity=0.328 Sum_probs=26.4
Q ss_pred hhcCCceeeccCcch-------HHHHHHHHHhhCCCCCEEeEec
Q psy15126 211 VSQGADFLMVKPALP-------YLDIISEVKSRHPAYPLFVYQV 247 (300)
Q Consensus 211 a~~GADivmVkPsmm-------~ld~Ir~~~d~~~~vpi~aY~v 247 (300)
.+.|||.|||-|-.. .++..+++.+.. ++||+-|+.
T Consensus 90 ~~~Gad~v~v~pP~y~~~~~~~i~~~~~~i~~~~-~~pi~lYn~ 132 (285)
T TIGR00674 90 EDVGADGFLVVTPYYNKPTQEGLYQHFKAIAEEV-DLPIILYNV 132 (285)
T ss_pred HHcCCCEEEEcCCcCCCCCHHHHHHHHHHHHhcC-CCCEEEEEC
Confidence 578999999986521 345556666665 799999987
No 260
>PRK07535 methyltetrahydrofolate:corrinoid/iron-sulfur protein methyltransferase; Validated
Probab=40.99 E-value=82 Score=29.64 Aligned_cols=71 Identities=18% Similarity=0.239 Sum_probs=41.1
Q ss_pred hhcCCceeeccCcch-------HHHHHHHHHhhCCCCCEEeEecccccHHHHHHHhC--C--CCCH-------HHHHHHH
Q psy15126 211 VSQGADFLMVKPALP-------YLDIISEVKSRHPAYPLFVYQVSGEYAMLAFAAQA--G--ALDL-------KRALMET 272 (300)
Q Consensus 211 a~~GADivmVkPsmm-------~ld~Ir~~~d~~~~vpi~aY~vSgeY~~~r~Aa~~--~--~~n~-------~eal~E~ 272 (300)
+++|||+|=|.-... ...+|+.+.+.+ ++||..= |..-.-++.|.+. | ++|. .+.+.+.
T Consensus 35 ~~~GAdiIDVg~~~~~~eE~~r~~~~v~~l~~~~-~~plsID--T~~~~v~eaaL~~~~G~~iINsIs~~~~~~~~~~~l 111 (261)
T PRK07535 35 AEAGADYLDVNAGTAVEEEPETMEWLVETVQEVV-DVPLCID--SPNPAAIEAGLKVAKGPPLINSVSAEGEKLEVVLPL 111 (261)
T ss_pred HHCCCCEEEECCCCCchhHHHHHHHHHHHHHHhC-CCCEEEe--CCCHHHHHHHHHhCCCCCEEEeCCCCCccCHHHHHH
Confidence 899999997665321 455666665554 6887433 5566666666654 3 2221 2334443
Q ss_pred HHHHHHcCCCEEEec
Q psy15126 273 LTCLRRGGADVIISY 287 (300)
Q Consensus 273 ~~~~~r~GAD~Ii~y 287 (300)
+ ++.|+.+|+..
T Consensus 112 ~---~~~g~~vv~m~ 123 (261)
T PRK07535 112 V---KKYNAPVVALT 123 (261)
T ss_pred H---HHhCCCEEEEe
Confidence 3 34588888643
No 261
>PRK13669 hypothetical protein; Provisional
Probab=40.99 E-value=56 Score=26.35 Aligned_cols=53 Identities=21% Similarity=0.319 Sum_probs=39.4
Q ss_pred HHHHHHHHHHhCCCcEEEeeecCCCCCCCCcceeeCC------CCceecHHhHHHHHHHHHHHHHc
Q psy15126 18 LFQVIPMIRKQFPSLTIACDVCLCGYTSHGHCAIFNE------DGSIHYEKTLKRLADISKAFSDA 77 (300)
Q Consensus 18 ~~~~i~~ik~~~p~l~i~~Dvclc~yt~hGHcgi~~~------~g~i~nd~Tl~~l~~~A~~~A~a 77 (300)
.+.+...+ +++|++-|+ +|.-.++||+-.. ||++..-.|-+.|.+....+-+.
T Consensus 16 ~~~~~~~L-e~dP~~dVi------e~gCls~CG~C~~~~FAlVng~~V~a~t~eeL~~kI~~~i~e 74 (78)
T PRK13669 16 SQAAFEKL-EKDPNLDVL------EYGCLGYCGICSEGLFALVNGEVVEGETPEELVENIYAHLEE 74 (78)
T ss_pred HHHHHHHH-HhCCCceEE------EcchhhhCcCcccCceEEECCeEeecCCHHHHHHHHHHHHhh
Confidence 35566656 579999886 5555667776432 68999999999999998887664
No 262
>cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of
Probab=40.96 E-value=1.7e+02 Score=26.92 Aligned_cols=62 Identities=27% Similarity=0.403 Sum_probs=37.8
Q ss_pred hhcCCceeec---cCcc-----------hHHHHHHHHHhhCCCCCEEeEecccccHHHHHHHhCCCCCHHHHHHHHHHHH
Q psy15126 211 VSQGADFLMV---KPAL-----------PYLDIISEVKSRHPAYPLFVYQVSGEYAMLAFAAQAGALDLKRALMETLTCL 276 (300)
Q Consensus 211 a~~GADivmV---kPsm-----------m~ld~Ir~~~d~~~~vpi~aY~vSgeY~~~r~Aa~~~~~n~~eal~E~~~~~ 276 (300)
.+.|+|+|-+ .|.. ...++++++++.. ++||+.= ++.. .+.+ -+.|....+
T Consensus 121 ~~~G~d~ielN~~cP~~~~~~~~~~~~~~~~eiv~~vr~~~-~~pv~vK-l~~~------------~~~~-~~~~~a~~l 185 (289)
T cd02810 121 ERAGAKALELNLSCPNVGGGRQLGQDPEAVANLLKAVKAAV-DIPLLVK-LSPY------------FDLE-DIVELAKAA 185 (289)
T ss_pred HHhCCCEEEEEcCCCCCCCCcccccCHHHHHHHHHHHHHcc-CCCEEEE-eCCC------------CCHH-HHHHHHHHH
Confidence 3568998865 3421 1346677777665 7887753 2221 2333 356666677
Q ss_pred HHcCCCEEEec
Q psy15126 277 RRGGADVIISY 287 (300)
Q Consensus 277 ~r~GAD~Ii~y 287 (300)
.++|||.|.+.
T Consensus 186 ~~~Gad~i~~~ 196 (289)
T cd02810 186 ERAGADGLTAI 196 (289)
T ss_pred HHcCCCEEEEE
Confidence 78999999874
No 263
>PRK09282 pyruvate carboxylase subunit B; Validated
Probab=40.88 E-value=99 Score=32.68 Aligned_cols=46 Identities=20% Similarity=0.450 Sum_probs=32.4
Q ss_pred hHHHHHHHHHhhhcccccCCCCCccccchhhhcCCceeeccCc--c--h--HHHHHHHHHhhCCCCCEEeE
Q psy15126 181 TLKRLADISKAFSDAVYVPNHNTDRFQARDVSQGADFLMVKPA--L--P--YLDIISEVKSRHPAYPLFVY 245 (300)
Q Consensus 181 tl~~l~~~a~~~a~~~~~~~~n~~~~~~~Da~~GADivmVkPs--m--m--~ld~Ir~~~d~~~~vpi~aY 245 (300)
|++.+.+.+... .++|||.|-+|=. . | --.+++.+++++ ++||-.+
T Consensus 152 t~~~~~~~a~~l------------------~~~Gad~I~i~Dt~G~~~P~~~~~lv~~lk~~~-~~pi~~H 203 (592)
T PRK09282 152 TIEKYVELAKEL------------------EEMGCDSICIKDMAGLLTPYAAYELVKALKEEV-DLPVQLH 203 (592)
T ss_pred CHHHHHHHHHHH------------------HHcCCCEEEECCcCCCcCHHHHHHHHHHHHHhC-CCeEEEE
Confidence 577788877775 6889999976653 2 2 456777777777 4887544
No 264
>PRK08195 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated
Probab=40.75 E-value=1.5e+02 Score=28.99 Aligned_cols=28 Identities=21% Similarity=0.443 Sum_probs=22.6
Q ss_pred ceecHHhHHHHHHHHHHHHHcCCCcccc
Q psy15126 57 SIHYEKTLKRLADISKAFSDAGAHIVAP 84 (300)
Q Consensus 57 ~i~nd~Tl~~l~~~A~~~A~aGad~vAP 84 (300)
......|.+...+++..+.++|++.|--
T Consensus 17 ~~~~~f~~~~~~~i~~~L~~aGv~~IEv 44 (337)
T PRK08195 17 AVRHQYTLEQVRAIARALDAAGVPVIEV 44 (337)
T ss_pred CCCCccCHHHHHHHHHHHHHcCCCEEEe
Confidence 3456788889999999999999998754
No 265
>PF04131 NanE: Putative N-acetylmannosamine-6-phosphate epimerase; InterPro: IPR007260 This family represents a putative ManNAc-6-P-to-GlcNAc-6P epimerase in the N-acetylmannosamine (ManNAc) utilization pathway found mainly in pathogenic bacteria for the reaction: N-acyl-D-glucosamine 6-phosphate = N-acyl-D-mannosamine 6-phosphate It is probably encoded by the yhcJ gene [].; GO: 0047465 N-acylglucosamine-6-phosphate 2-epimerase activity, 0006051 N-acetylmannosamine metabolic process; PDB: 1Y0E_B 3IGS_A 1YXY_A 3Q58_B.
Probab=40.56 E-value=65 Score=29.89 Aligned_cols=47 Identities=17% Similarity=0.303 Sum_probs=33.9
Q ss_pred cccCCCCCChHHHHHHHHHHhCCCcEEEeeecCCCCCCCCcceeeCCCCceecHHhHHHHHHHHHHHHHcCCCcccc
Q psy15126 8 ASFADTPDNPLFQVIPMIRKQFPSLTIACDVCLCGYTSHGHCAIFNEDGSIHYEKTLKRLADISKAFSDAGAHIVAP 84 (300)
Q Consensus 8 ~s~a~~~~~~~~~~i~~ik~~~p~l~i~~Dvclc~yt~hGHcgi~~~~g~i~nd~Tl~~l~~~A~~~A~aGad~vAP 84 (300)
++.-..| -.+.+.++.||++| ..+|+|+.- .+.++..+++|+|+|+.
T Consensus 72 aT~R~Rp-~~l~~li~~i~~~~--~l~MADist---------------------------~ee~~~A~~~G~D~I~T 118 (192)
T PF04131_consen 72 ATDRPRP-ETLEELIREIKEKY--QLVMADIST---------------------------LEEAINAAELGFDIIGT 118 (192)
T ss_dssp -SSSS-S-S-HHHHHHHHHHCT--SEEEEE-SS---------------------------HHHHHHHHHTT-SEEE-
T ss_pred cCCCCCC-cCHHHHHHHHHHhC--cEEeeecCC---------------------------HHHHHHHHHcCCCEEEc
Confidence 3444567 78999999999999 999999642 35678899999999987
No 266
>COG2197 CitB Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription]
Probab=40.37 E-value=1.8e+02 Score=26.11 Aligned_cols=69 Identities=20% Similarity=0.365 Sum_probs=50.0
Q ss_pred hcCCceeecc---CcchHHHHHHHHHhhCCCCCEEeEecccccHHHHHHHhCCCC------CHHHHHHHHHHHHHHcCC
Q psy15126 212 SQGADFLMVK---PALPYLDIISEVKSRHPAYPLFVYQVSGEYAMLAFAAQAGAL------DLKRALMETLTCLRRGGA 281 (300)
Q Consensus 212 ~~GADivmVk---Psmm~ld~Ir~~~d~~~~vpi~aY~vSgeY~~~r~Aa~~~~~------n~~eal~E~~~~~~r~GA 281 (300)
+...|++++- |.+.-++.++.+++++|+++|...+...+..-++.+.+.|.. -..+.+.|++.... .|-
T Consensus 44 ~~~pdvvl~Dl~mP~~~G~e~~~~l~~~~p~~~vvvlt~~~~~~~v~~al~~Ga~Gyl~K~~~~~~l~~ai~~v~-~G~ 121 (211)
T COG2197 44 ELKPDVVLLDLSMPGMDGLEALKQLRARGPDIKVVVLTAHDDPAYVIRALRAGADGYLLKDASPEELVEAIRAVA-AGG 121 (211)
T ss_pred hcCCCEEEEcCCCCCCChHHHHHHHHHHCCCCcEEEEeccCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHH-CCC
Confidence 4455666655 444589999999988999999999998888888888876521 12345777777774 554
No 267
>cd04733 OYE_like_2_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 2. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=40.27 E-value=45 Score=31.92 Aligned_cols=68 Identities=18% Similarity=0.286 Sum_probs=47.6
Q ss_pred CcccccCCCCCChHHHHHHHHHHhCC-CcEEEeeecCCCCCCCCcceeeCCCCceecHHhHHHHHHHHHHHHHcCCCccc
Q psy15126 5 DETASFADTPDNPLFQVIPMIRKQFP-SLTIACDVCLCGYTSHGHCAIFNEDGSIHYEKTLKRLADISKAFSDAGAHIVA 83 (300)
Q Consensus 5 d~~~s~a~~~~~~~~~~i~~ik~~~p-~l~i~~Dvclc~yt~hGHcgi~~~~g~i~nd~Tl~~l~~~A~~~A~aGad~vA 83 (300)
|+.|-.-.|---.+.+.|++||+..+ ++.|..+++..+|.- .| .|.+...+.+..+.++|+|.|.
T Consensus 189 D~yGGslenR~rf~~EiI~aIR~avG~d~~v~vris~~~~~~---------~g-----~~~eea~~ia~~Le~~Gvd~ie 254 (338)
T cd04733 189 DEYGGSLENRARLLLEIYDAIRAAVGPGFPVGIKLNSADFQR---------GG-----FTEEDALEVVEALEEAGVDLVE 254 (338)
T ss_pred ccCCCCHHHHHHHHHHHHHHHHHHcCCCCeEEEEEcHHHcCC---------CC-----CCHHHHHHHHHHHHHcCCCEEE
Confidence 55553333344456789999999995 799999998765532 22 2455667888888999999998
Q ss_pred cCC
Q psy15126 84 PSD 86 (300)
Q Consensus 84 PSd 86 (300)
.|.
T Consensus 255 v~~ 257 (338)
T cd04733 255 LSG 257 (338)
T ss_pred ecC
Confidence 653
No 268
>PLN02334 ribulose-phosphate 3-epimerase
Probab=40.23 E-value=1.7e+02 Score=26.28 Aligned_cols=26 Identities=38% Similarity=0.491 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHcCCCccccCCCCcch
Q psy15126 65 KRLADISKAFSDAGAHIVAPSDMMDNR 91 (300)
Q Consensus 65 ~~l~~~A~~~A~aGad~vAPSdmMDgr 91 (300)
..|.++...+.++|+++|-. +.|||.
T Consensus 20 ~~l~~~l~~~~~~g~~~ihl-d~~d~~ 45 (229)
T PLN02334 20 ANLAEEAKRVLDAGADWLHV-DVMDGH 45 (229)
T ss_pred HHHHHHHHHHHHcCCCEEEE-ecccCC
Confidence 35677777888889998887 788873
No 269
>TIGR00035 asp_race aspartate racemase.
Probab=40.12 E-value=1.1e+02 Score=27.57 Aligned_cols=60 Identities=17% Similarity=0.154 Sum_probs=41.2
Q ss_pred CCCEEeEecccccHHHHHHHhCCCCCHHHHHHHHHHHHHHcCCCEEEecc--hHHHHHHHhh
Q psy15126 239 AYPLFVYQVSGEYAMLAFAAQAGALDLKRALMETLTCLRRGGADVIISYY--TPRVLEWLRE 298 (300)
Q Consensus 239 ~vpi~aY~vSgeY~~~r~Aa~~~~~n~~eal~E~~~~~~r~GAD~Ii~y~--A~~~ld~l~~ 298 (300)
+.|.+.++........++-...+|-+..+.+.+....+.++|||+|+.-= +-.+++.|++
T Consensus 34 ~~~~i~~~~~~~~dr~~~~~~~~~~~~~~~l~~~~~~L~~~g~d~iviaCNTah~~~~~l~~ 95 (229)
T TIGR00035 34 HPAEVLFNNPNIPDRTAYILGRGEDRPRPILIDIAVKLENAGADFIIMPCNTAHKFAEDIQK 95 (229)
T ss_pred CCceeeeeCCCHHHHHHHHhcCCcchHHHHHHHHHHHHHHcCCCEEEECCccHHHHHHHHHH
Confidence 57888887655444434334456778899999999999999999987542 2223566653
No 270
>PF02679 ComA: (2R)-phospho-3-sulfolactate synthase (ComA); InterPro: IPR003830 Methanogenic archaea produce methane via the anaerobic reduction of acetate or single carbon compounds []. Coenzyme M (CoM; 2-mercaptoethanesulphonic acid) serves as the terminal methyl carrier for this process. Previously thought to be unique to methanogenic archaea, CoM has also been found in methylotrophic bacteria. Biosynthesis of CoM begins with the Michael addition of sulphite to phosphoenolpyruvate, forming 2-phospho-3-sulpholactate (PSL). This reaction is catalyzed by members of this family, PSL synthase (ComA) []. Subsequently, PSL is dephosphorylated by phosphosulpholactate phosphatase (ComB) to form 3-sulpholactate [], which is then converted to 3-sulphopyruvate by L-sulpholactate dehydrogenase (ComC; 1.1.1.272 from EC) []. Sulphopyruvate decarboxylase (ComDE; 4.1.1.79 from EC) converts 3-sulphopyruvate to sulphoacetaldehyde []. Reductive thiolation of sulphoacetaldehyde is the final step.; GO: 0019295 coenzyme M biosynthetic process; PDB: 1U83_A 1QWG_A.
Probab=40.05 E-value=26 Score=33.25 Aligned_cols=78 Identities=21% Similarity=0.195 Sum_probs=47.7
Q ss_pred CCCccccchhhhcCCceeeccCcc---h---HHHHHHHHHhh-CCCCCEEeEecccccHHHHHHHhCCCCCHHHHHHHHH
Q psy15126 201 HNTDRFQARDVSQGADFLMVKPAL---P---YLDIISEVKSR-HPAYPLFVYQVSGEYAMLAFAAQAGALDLKRALMETL 273 (300)
Q Consensus 201 ~n~~~~~~~Da~~GADivmVkPsm---m---~ld~Ir~~~d~-~~~vpi~aY~vSgeY~~~r~Aa~~~~~n~~eal~E~~ 273 (300)
+..++++..=-+-|-|.|=|.=+. + +...||+++++ |. |-.|+| -|........+..+.+.+..
T Consensus 84 ~~~~~yl~~~k~lGf~~IEiSdGti~l~~~~r~~~I~~~~~~Gf~--------v~~EvG-~K~~~~~~~~~~~~~i~~~~ 154 (244)
T PF02679_consen 84 GKFDEYLEECKELGFDAIEISDGTIDLPEEERLRLIRKAKEEGFK--------VLSEVG-KKDPESDFSLDPEELIEQAK 154 (244)
T ss_dssp T-HHHHHHHHHHCT-SEEEE--SSS---HHHHHHHHHHHCCTTSE--------EEEEES--SSHHHHTT--CCHHHHHHH
T ss_pred ChHHHHHHHHHHcCCCEEEecCCceeCCHHHHHHHHHHHHHCCCE--------Eeeccc-CCCchhcccCCHHHHHHHHH
Confidence 556667766677888888544431 2 78999999987 52 222555 22333334445677888888
Q ss_pred HHHHHcCCCEEEecc
Q psy15126 274 TCLRRGGADVIISYY 288 (300)
Q Consensus 274 ~~~~r~GAD~Ii~y~ 288 (300)
.++ ++||++||+-.
T Consensus 155 ~dL-eAGA~~ViiEa 168 (244)
T PF02679_consen 155 RDL-EAGADKVIIEA 168 (244)
T ss_dssp HHH-HHTECEEEE--
T ss_pred HHH-HCCCCEEEEee
Confidence 888 79999999853
No 271
>PRK08185 hypothetical protein; Provisional
Probab=40.02 E-value=1.4e+02 Score=28.78 Aligned_cols=65 Identities=34% Similarity=0.467 Sum_probs=46.2
Q ss_pred hhc-CCceeec-------------cCcchHHHHHHHHHhhCCCCCEEeEecccc-cHHHHHHHhCCC------CCHHHHH
Q psy15126 211 VSQ-GADFLMV-------------KPALPYLDIISEVKSRHPAYPLFVYQVSGE-YAMLAFAAQAGA------LDLKRAL 269 (300)
Q Consensus 211 a~~-GADivmV-------------kPsmm~ld~Ir~~~d~~~~vpi~aY~vSge-Y~~~r~Aa~~~~------~n~~eal 269 (300)
+++ |+|.|-| +|.+ .++.++++++.. ++|+.....||- --.+|.|++.|. .+.+.+.
T Consensus 158 ~~~TgvD~LAvaiGt~HG~y~~~~kp~L-~~e~l~~I~~~~-~iPLVlHGgsg~~~e~~~~ai~~GI~KiNi~T~l~~a~ 235 (283)
T PRK08185 158 VSRTGVDTLAVAIGTAHGIYPKDKKPEL-QMDLLKEINERV-DIPLVLHGGSANPDAEIAESVQLGVGKINISSDMKYAF 235 (283)
T ss_pred HHhhCCCEEEeccCcccCCcCCCCCCCc-CHHHHHHHHHhh-CCCEEEECCCCCCHHHHHHHHHCCCeEEEeChHHHHHH
Confidence 455 9999977 4543 388888888875 799999988653 456888888773 2446666
Q ss_pred HHHHHHHH
Q psy15126 270 METLTCLR 277 (300)
Q Consensus 270 ~E~~~~~~ 277 (300)
.+.++...
T Consensus 236 ~~~~~~~~ 243 (283)
T PRK08185 236 FKKVREIL 243 (283)
T ss_pred HHHHHHHH
Confidence 66666543
No 272
>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.
Probab=40.01 E-value=54 Score=33.62 Aligned_cols=42 Identities=19% Similarity=0.275 Sum_probs=31.4
Q ss_pred ChHHHHHHHHHHhCCCcEEEeeecCCCCCCCCcceeeCCCCceecHHhHHHHHHHHHHHHHcCCCccc
Q psy15126 16 NPLFQVIPMIRKQFPSLTIACDVCLCGYTSHGHCAIFNEDGSIHYEKTLKRLADISKAFSDAGAHIVA 83 (300)
Q Consensus 16 ~~~~~~i~~ik~~~p~l~i~~Dvclc~yt~hGHcgi~~~~g~i~nd~Tl~~l~~~A~~~A~aGad~vA 83 (300)
-.+.++|+.||+.||++.||++-|. + .+.+..+.++|+|.|-
T Consensus 251 ~~~~~~i~~i~~~~~~~~vi~g~~~------------t--------------~~~~~~l~~~G~d~i~ 292 (475)
T TIGR01303 251 VKMISAIKAVRALDLGVPIVAGNVV------------S--------------AEGVRDLLEAGANIIK 292 (475)
T ss_pred HHHHHHHHHHHHHCCCCeEEEeccC------------C--------------HHHHHHHHHhCCCEEE
Confidence 4567789999999999998884222 1 3467777889999875
No 273
>PRK07259 dihydroorotate dehydrogenase 1B; Reviewed
Probab=39.92 E-value=1.9e+02 Score=26.93 Aligned_cols=44 Identities=20% Similarity=0.281 Sum_probs=26.1
Q ss_pred HHHHHHHHhhCCCCCEEeEecccccHHHHHHHhCCCCCHHHHHHHHHHHHHHcCCCEEEecchH
Q psy15126 227 LDIISEVKSRHPAYPLFVYQVSGEYAMLAFAAQAGALDLKRALMETLTCLRRGGADVIISYYTP 290 (300)
Q Consensus 227 ld~Ir~~~d~~~~vpi~aY~vSgeY~~~r~Aa~~~~~n~~eal~E~~~~~~r~GAD~Ii~y~A~ 290 (300)
+..++++++.. ++||.+= | |..+.+++ .|. + ++|||+|++.-+.
T Consensus 223 l~~v~~i~~~~-~ipvi~~---G-----------GI~~~~da-~~~---l-~aGAd~V~igr~l 266 (301)
T PRK07259 223 LRMVYQVYQAV-DIPIIGM---G-----------GISSAEDA-IEF---I-MAGASAVQVGTAN 266 (301)
T ss_pred HHHHHHHHHhC-CCCEEEE---C-----------CCCCHHHH-HHH---H-HcCCCceeEcHHH
Confidence 56667766654 5776653 1 23344333 333 3 4899999987653
No 274
>PRK00865 glutamate racemase; Provisional
Probab=39.76 E-value=3.1e+02 Score=25.40 Aligned_cols=22 Identities=27% Similarity=0.243 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHcCCCEEEec
Q psy15126 266 KRALMETLTCLRRGGADVIISY 287 (300)
Q Consensus 266 ~eal~E~~~~~~r~GAD~Ii~y 287 (300)
++.+.+.+..+++.|+|.|+.-
T Consensus 163 ~~~l~~~l~~l~~~g~d~iILG 184 (261)
T PRK00865 163 LEVLREYLAPLLAAGIDTLVLG 184 (261)
T ss_pred HHHHHHHHHHHhcCCCCEEEEC
Confidence 4567777777767799988864
No 275
>PTZ00170 D-ribulose-5-phosphate 3-epimerase; Provisional
Probab=39.33 E-value=27 Score=31.89 Aligned_cols=22 Identities=27% Similarity=0.386 Sum_probs=16.5
Q ss_pred HHHHHHHHHhCCCcEEEeeecCCC
Q psy15126 19 FQVIPMIRKQFPSLTIACDVCLCG 42 (300)
Q Consensus 19 ~~~i~~ik~~~p~l~i~~Dvclc~ 42 (300)
.+.++.||+.+|++.+ |+-|=+
T Consensus 53 ~~~v~~lr~~~~~~~l--DvHLm~ 74 (228)
T PTZ00170 53 PPVVKSLRKHLPNTFL--DCHLMV 74 (228)
T ss_pred HHHHHHHHhcCCCCCE--EEEECC
Confidence 4789999998888765 666643
No 276
>TIGR01501 MthylAspMutase methylaspartate mutase, S subunit. This model represents the S (sigma) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=39.27 E-value=38 Score=29.25 Aligned_cols=48 Identities=8% Similarity=0.007 Sum_probs=35.7
Q ss_pred cHHhHHHHHHHHHHHHHcCCCccccCCCCcchH---HHHHHHHhhCCCCCCcccc
Q psy15126 60 YEKTLKRLADISKAFSDAGAHIVAPSDMMDNRI---HAIKQSLFTSRQSSTTGLL 111 (300)
Q Consensus 60 nd~Tl~~l~~~A~~~A~aGad~vAPSdmMDgrv---~air~aLd~~g~~~~v~Im 111 (300)
.+.|.+++++.|+. .++|+|+.|.+|-... ....+.|.++|+ .++.|+
T Consensus 37 ~~v~~e~~v~aa~~---~~adiVglS~l~~~~~~~~~~~~~~l~~~gl-~~~~vi 87 (134)
T TIGR01501 37 VLSPQEEFIKAAIE---TKADAILVSSLYGHGEIDCKGLRQKCDEAGL-EGILLY 87 (134)
T ss_pred CCCCHHHHHHHHHH---cCCCEEEEecccccCHHHHHHHHHHHHHCCC-CCCEEE
Confidence 46788888887754 5999999999987665 455667888999 454443
No 277
>cd02809 alpha_hydroxyacid_oxid_FMN Family of homologous FMN-dependent alpha-hydroxyacid oxidizing enzymes. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO). In green plants, glycolate oxidase is one of the key enzymes in photorespiration where it oxidizes glycolate to glyoxylate. LMO catalyzes the oxidation of L-lactate to acetate and carbon dioxide. MDH oxidizes (S)-mandelate to phenylglyoxalate. It is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate.
Probab=39.17 E-value=1.4e+02 Score=28.07 Aligned_cols=62 Identities=23% Similarity=0.254 Sum_probs=39.7
Q ss_pred chhhhcCCceeeccCc--------chHHHHHHHHHhhCC-CCCEEeEecccccHHHHHHHhCCCCCHHHHHHHHHHHHHH
Q psy15126 208 ARDVSQGADFLMVKPA--------LPYLDIISEVKSRHP-AYPLFVYQVSGEYAMLAFAAQAGALDLKRALMETLTCLRR 278 (300)
Q Consensus 208 ~~Da~~GADivmVkPs--------mm~ld~Ir~~~d~~~-~vpi~aY~vSgeY~~~r~Aa~~~~~n~~eal~E~~~~~~r 278 (300)
.+=.++|||.|.|.-. .+.+..++++++..+ ++||++-. |..+.+ ++.+.+ .
T Consensus 187 ~~a~~~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~~~~ipvia~G--------------GI~~~~----d~~kal-~ 247 (299)
T cd02809 187 LRAVDAGADGIVVSNHGGRQLDGAPATIDALPEIVAAVGGRIEVLLDG--------------GIRRGT----DVLKAL-A 247 (299)
T ss_pred HHHHHCCCCEEEEcCCCCCCCCCCcCHHHHHHHHHHHhcCCCeEEEeC--------------CCCCHH----HHHHHH-H
Confidence 3346789999988331 135777888877643 68987752 344553 333445 4
Q ss_pred cCCCEEEecc
Q psy15126 279 GGADVIISYY 288 (300)
Q Consensus 279 ~GAD~Ii~y~ 288 (300)
.|||.|++--
T Consensus 248 lGAd~V~ig~ 257 (299)
T cd02809 248 LGADAVLIGR 257 (299)
T ss_pred cCCCEEEEcH
Confidence 7999988754
No 278
>PF04551 GcpE: GcpE protein; InterPro: IPR004588 This protein previously of unknown biochemical function is essential in Escherichia coli. It has now been characterised as 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase, which converts 2C-methyl-D-erythritol 2,4-cyclodiphosphate (ME-2,4CPP) into 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate in the sixth step of nonmevalonate terpenoid biosynthesis. The family is largely restricted to bacteria, where it is widely but not universally distributed. No homology can be detected between this family and other proteins.; GO: 0046429 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase activity, 0016114 terpenoid biosynthetic process, 0055114 oxidation-reduction process; PDB: 2Y0F_C 3NOY_A.
Probab=39.13 E-value=1.8e+02 Score=29.44 Aligned_cols=73 Identities=19% Similarity=0.352 Sum_probs=45.8
Q ss_pred hhcCCceeecc-CcchHHHHHHHHHhh-----CCCCCEEeEecccccHHHHHHHhC------CCCCH-----------HH
Q psy15126 211 VSQGADFLMVK-PALPYLDIISEVKSR-----HPAYPLFVYQVSGEYAMLAFAAQA------GALDL-----------KR 267 (300)
Q Consensus 211 a~~GADivmVk-Psmm~ld~Ir~~~d~-----~~~vpi~aY~vSgeY~~~r~Aa~~------~~~n~-----------~e 267 (300)
.++|+|+|=|+ |++--...+++++++ . ++|+++= .=-.|...-.|++. ||-|. ++
T Consensus 41 ~~aGceivRvavp~~~~a~al~~I~~~l~~~g~-~iPlVAD-IHFd~~lAl~a~~~v~kiRINPGNi~~~~~~~~g~~~~ 118 (359)
T PF04551_consen 41 EEAGCEIVRVAVPDMEAAEALKEIKKRLRALGS-PIPLVAD-IHFDYRLALEAIEAVDKIRINPGNIVDEFQEELGSIRE 118 (359)
T ss_dssp HHCT-SEEEEEE-SHHHHHHHHHHHHHHHCTT--SS-EEEE-ESTTCHHHHHHHHC-SEEEE-TTTSS----SS-SS-HH
T ss_pred HHcCCCEEEEcCCCHHHHHHHHHHHHhhccCCC-CCCeeee-cCCCHHHHHHHHHHhCeEEECCCcccccccccccchHH
Confidence 79999999554 556566666666665 5 6999884 22356666666653 33333 88
Q ss_pred HHHHHHHHHHHcCCCEEE
Q psy15126 268 ALMETLTCLRRGGADVII 285 (300)
Q Consensus 268 al~E~~~~~~r~GAD~Ii 285 (300)
-+.|.....|+.|--|=|
T Consensus 119 ~~~~vv~~ake~~ipIRI 136 (359)
T PF04551_consen 119 KVKEVVEAAKERGIPIRI 136 (359)
T ss_dssp HHHHHHHHHHHHT-EEEE
T ss_pred HHHHHHHHHHHCCCCEEE
Confidence 899999988877765533
No 279
>TIGR01108 oadA oxaloacetate decarboxylase alpha subunit. This model describes the bacterial oxaloacetate decarboxylase alpha subunit and its equivalents in archaea. The oxaloacetate decarboxylase Na+ pump is the paradigm of the family of Na+ transport decarboxylases that present in bacteria and archaea. It a multi subunit enzyme consisting of a peripheral alpha-subunit and integral membrane subunits beta and gamma. The energy released by the decarboxylation reaction of oxaloacetate is coupled to Na+ ion pumping across the membrane.
Probab=38.87 E-value=72 Score=33.62 Aligned_cols=56 Identities=21% Similarity=0.249 Sum_probs=40.9
Q ss_pred CCCCEEeEecccc-cHHHHHH-HhCCCCCHHHHHHHHHHHHHHcCCCEEEecchHHHH
Q psy15126 238 PAYPLFVYQVSGE-YAMLAFA-AQAGALDLKRALMETLTCLRRGGADVIISYYTPRVL 293 (300)
Q Consensus 238 ~~vpi~aY~vSge-Y~~~r~A-a~~~~~n~~eal~E~~~~~~r~GAD~Ii~y~A~~~l 293 (300)
++.-|.-|+++|- |+-++.= -++|..++=+.++|-....++..-+.++|-|..++.
T Consensus 282 ~~~~v~~~e~pGG~~snl~~ql~~~g~~~~~~~vl~e~~~v~~~lG~~~~VTP~Sq~v 339 (582)
T TIGR01108 282 PDSRILVAQVPGGMLSNLESQLKEQNALDKLDEVLEEIPRVREDLGYPPLVTPTSQIV 339 (582)
T ss_pred CCccEEEEcCCCchHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCCCeECCccHHH
Confidence 3556788888665 5555544 467888876677777777878899999999876654
No 280
>PRK10643 DNA-binding transcriptional regulator BasR; Provisional
Probab=38.74 E-value=1.6e+02 Score=24.28 Aligned_cols=49 Identities=10% Similarity=0.237 Sum_probs=32.6
Q ss_pred cCCceeeccCcch---HHHHHHHHHhhCCCCCEEeEecccccHHHHHHHhCC
Q psy15126 213 QGADFLMVKPALP---YLDIISEVKSRHPAYPLFVYQVSGEYAMLAFAAQAG 261 (300)
Q Consensus 213 ~GADivmVkPsmm---~ld~Ir~~~d~~~~vpi~aY~vSgeY~~~r~Aa~~~ 261 (300)
...|+|++-..|+ -++.+++++...+..|++..+..........+.+.|
T Consensus 43 ~~~d~illd~~~~~~~g~~~~~~l~~~~~~~pii~ls~~~~~~~~~~~~~~g 94 (222)
T PRK10643 43 GHYSLVVLDLGLPDEDGLHLLRRWRQKKYTLPVLILTARDTLEDRVAGLDVG 94 (222)
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCCCcEEEEECCCCHHHHHHHHhcC
Confidence 4578888876544 678888888776789999886544444444444443
No 281
>COG0413 PanB Ketopantoate hydroxymethyltransferase [Coenzyme metabolism]
Probab=38.70 E-value=2.6e+02 Score=27.38 Aligned_cols=135 Identities=19% Similarity=0.252 Sum_probs=86.9
Q ss_pred HHHHHHhCCCcEEEeeecCCCCCCCCcceeeCCCCceecHHhHHHHHHHHHHHHH-cCCCccccCCCCcchHHHHHHHHh
Q psy15126 22 IPMIRKQFPSLTIACDVCLCGYTSHGHCAIFNEDGSIHYEKTLKRLADISKAFSD-AGAHIVAPSDMMDNRIHAIKQSLF 100 (300)
Q Consensus 22 i~~ik~~~p~l~i~~Dvclc~yt~hGHcgi~~~~g~i~nd~Tl~~l~~~A~~~A~-aGad~vAPSdmMDgrv~air~aLd 100 (300)
.+..++.-|+..|++|.-+-+| ..|.++..+-|..+-+ +||++|=...- ..+..+-+.|-
T Consensus 67 t~aV~Rga~~~~vv~DmPF~sy-----------------~~s~~~a~~nA~r~~ke~gA~aVKlEGG--~~~~~~i~~L~ 127 (268)
T COG0413 67 TKAVRRGAPNAFVVADLPFGSY-----------------EVSPEQALKNAARLMKEAGADAVKLEGG--EEMAETIKRLT 127 (268)
T ss_pred HHHHHhcCCCeeEEeCCCCccc-----------------CCCHHHHHHHHHHHHHHhCCCEEEEcCC--HHHHHHHHHHH
Confidence 4667788899999999855444 2466777777777777 99999988554 56677777888
Q ss_pred hCCCCCCcccccchhhhhcccchhhhhhhcCCCCCCCcceeeCCCCCCceEEEEeecccCCCCCCccccccCCCcccchH
Q psy15126 101 TSRQSSTTGLLSYSAKFCSAFYGPFREAAGSAPTFGDRSCYQLPCGSKGLAIRAAVCLCGYTSHGHCAIFNEDGSIHYEK 180 (300)
Q Consensus 101 ~~g~~~~v~ImsysaK~aS~~YGPfRda~gS~~~~gdr~~yQ~~~~~~~~ai~~dvclc~yt~hGHcgi~~~~g~i~nd~ 180 (300)
+.|. +||++ +|=.|+.-.. +=+|-..| ..++
T Consensus 128 ~~gI----PV~gH---------------iGLtPQ~v~~-------------------~GGykvqG-----------r~~~ 158 (268)
T COG0413 128 ERGI----PVMGH---------------IGLTPQSVNW-------------------LGGYKVQG-----------RTEE 158 (268)
T ss_pred HcCC----ceEEE---------------ecCChhhhhc-------------------cCCeeeec-----------CCHH
Confidence 8888 57755 4445542100 11122222 2467
Q ss_pred hHHHHHHHHHhhhcccccCCCCCccccchhhhcCCceeeccCcchHHHHHHHHHhhCCCCCEEeE
Q psy15126 181 TLKRLADISKAFSDAVYVPNHNTDRFQARDVSQGADFLMVKPALPYLDIISEVKSRHPAYPLFVY 245 (300)
Q Consensus 181 tl~~l~~~a~~~a~~~~~~~~n~~~~~~~Da~~GADivmVkPsmm~ld~Ir~~~d~~~~vpi~aY 245 (300)
+-++|.+.|++. .++||-.|.+. .---.+-+++-++. .+|...=
T Consensus 159 ~a~~l~~dA~al------------------e~AGaf~ivlE--~Vp~~lA~~IT~~l-siPtIGI 202 (268)
T COG0413 159 SAEKLLEDAKAL------------------EEAGAFALVLE--CVPAELAKEITEKL-SIPTIGI 202 (268)
T ss_pred HHHHHHHHHHHH------------------HhcCceEEEEe--ccHHHHHHHHHhcC-CCCEEee
Confidence 889999999998 68999877332 11334445555553 5665543
No 282
>PLN02540 methylenetetrahydrofolate reductase
Probab=38.16 E-value=5.3e+02 Score=27.59 Aligned_cols=78 Identities=14% Similarity=0.121 Sum_probs=47.9
Q ss_pred hhcCCceeeccCc-c--hHHHHHHHHHhhCCCCCEEeEec-ccccHHHHHHHhC--------------CCCCHH------
Q psy15126 211 VSQGADFLMVKPA-L--PYLDIISEVKSRHPAYPLFVYQV-SGEYAMLAFAAQA--------------GALDLK------ 266 (300)
Q Consensus 211 a~~GADivmVkPs-m--m~ld~Ir~~~d~~~~vpi~aY~v-SgeY~~~r~Aa~~--------------~~~n~~------ 266 (300)
+++|||+++--|= . .+++.+.++++.-.++||++==. -.-|++++..++. ..-|.+
T Consensus 166 vdAGAdFiITQlfFD~d~f~~f~~~~r~~Gi~vPIipGImPI~S~k~l~r~~~l~Gi~IP~~i~~rLe~~kddde~v~~~ 245 (565)
T PLN02540 166 VDAGADLIITQLFYDTDIFLKFVNDCRQIGITCPIVPGIMPINNYKGFLRMTGFCKTKIPAEITAALEPIKDNDEAVKAY 245 (565)
T ss_pred HHcCCCEEeeccccCHHHHHHHHHHHHhcCCCCCEEeeecccCCHHHHHHHHhccCCcCCHHHHHHHHhcCCCHHHHHHH
Confidence 7899999977765 2 26777777776644688876432 4456666654421 111222
Q ss_pred --HHHHHHHHHHHHcCCCEEEecc
Q psy15126 267 --RALMETLTCLRRGGADVIISYY 288 (300)
Q Consensus 267 --eal~E~~~~~~r~GAD~Ii~y~ 288 (300)
+...|....++..|++-|=.|.
T Consensus 246 Gieia~e~~~~L~~~Gv~GiHfYT 269 (565)
T PLN02540 246 GIHLGTEMCKKILAHGIKGLHLYT 269 (565)
T ss_pred HHHHHHHHHHHHHHcCCCEEEECc
Confidence 3356677777777888766554
No 283
>PRK12655 fructose-6-phosphate aldolase; Reviewed
Probab=38.13 E-value=40 Score=31.25 Aligned_cols=91 Identities=21% Similarity=0.237 Sum_probs=53.4
Q ss_pred CCCCChHHHHHHHHHHhCCCcEEEeeecCCCCCCCCccee--eCCCCceecHHhHHHHHHHHHHHHHcCCCcccc-CCCC
Q psy15126 12 DTPDNPLFQVIPMIRKQFPSLTIACDVCLCGYTSHGHCAI--FNEDGSIHYEKTLKRLADISKAFSDAGAHIVAP-SDMM 88 (300)
Q Consensus 12 ~~~~~~~~~~i~~ik~~~p~l~i~~Dvclc~yt~hGHcgi--~~~~g~i~nd~Tl~~l~~~A~~~A~aGad~vAP-SdmM 88 (300)
.+.++.+.+|.+ |.+.+|+++| =-|-|..|=-.+ +...| |.--.|.---++||+..|++||+.|+| -.-|
T Consensus 63 ~d~e~mi~eA~~-l~~~~~nv~I-----KIP~T~~Gl~Ai~~L~~~G-I~vn~T~vfs~~Qa~~Aa~aGa~yIspyvgR~ 135 (220)
T PRK12655 63 RDAQGMVEEAKR-LRNAIPGIVV-----KIPVTAEGLAAIKKLKKEG-IPTLGTAVYSAAQGLLAALAGAKYVAPYVNRV 135 (220)
T ss_pred CCHHHHHHHHHH-HHHhCCCEEE-----EeCCCHHHHHHHHHHHHCC-CceeEeEecCHHHHHHHHHcCCeEEEeecchH
Confidence 355566666544 4556677554 137776663322 22233 333334334456889999999999999 1111
Q ss_pred -----c--chHHHHHHHHhhCCCCCCcccc
Q psy15126 89 -----D--NRIHAIKQSLFTSRQSSTTGLL 111 (300)
Q Consensus 89 -----D--grv~air~aLd~~g~~~~v~Im 111 (300)
| ..+..+++.++..|+ ++-||
T Consensus 136 ~~~g~dg~~~i~~~~~~~~~~~~--~tkIL 163 (220)
T PRK12655 136 DAQGGDGIRMVQELQTLLEMHAP--ESMVL 163 (220)
T ss_pred hHcCCCHHHHHHHHHHHHHhcCC--CcEEE
Confidence 2 236677777777777 45666
No 284
>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes. The function of this family is unknown.
Probab=37.93 E-value=4.4 Score=37.42 Aligned_cols=73 Identities=19% Similarity=0.240 Sum_probs=42.6
Q ss_pred chHHHHHHHHhhCCCCCCcccccchhhhhcccchhhhhh-hcCCCCC--CCcceeeCCCCCCceEEEEeecccCCCCCCc
Q psy15126 90 NRIHAIKQSLFTSRQSSTTGLLSYSAKFCSAFYGPFREA-AGSAPTF--GDRSCYQLPCGSKGLAIRAAVCLCGYTSHGH 166 (300)
Q Consensus 90 grv~air~aLd~~g~~~~v~ImsysaK~aS~~YGPfRda-~gS~~~~--gdr~~yQ~~~~~~~~ai~~dvclc~yt~hGH 166 (300)
|-..-..+.|.+.|+ - ..||||+.- .-+++.. .|.. ++.+||..+||..
T Consensus 122 ~lf~~a~~~L~~gG~-L-------------~~YGPF~~~G~~ts~SN~~FD~s---Lr~rdp~~GiRD~----------- 173 (204)
T PF06080_consen 122 GLFAGAARLLKPGGL-L-------------FLYGPFNRDGKFTSESNAAFDAS---LRSRDPEWGIRDI----------- 173 (204)
T ss_pred HHHHHHHHhCCCCCE-E-------------EEeCCcccCCEeCCcHHHHHHHH---HhcCCCCcCccCH-----------
Confidence 344444577777777 2 389999543 2233331 2444 3445566666654
Q ss_pred cccccCCCcccchHhHHHHHHH-HHhhhcccccCCCCC
Q psy15126 167 CAIFNEDGSIHYEKTLKRLADI-SKAFSDAVYVPNHNT 203 (300)
Q Consensus 167 cgi~~~~g~i~nd~tl~~l~~~-a~~~a~~~~~~~~n~ 203 (300)
+-|+.|+.. -+.+-+.+-||-||-
T Consensus 174 -------------e~v~~lA~~~GL~l~~~~~MPANN~ 198 (204)
T PF06080_consen 174 -------------EDVEALAAAHGLELEEDIDMPANNL 198 (204)
T ss_pred -------------HHHHHHHHHCCCccCcccccCCCCe
Confidence 345555554 466667888898884
No 285
>PRK00115 hemE uroporphyrinogen decarboxylase; Validated
Probab=37.80 E-value=42 Score=32.06 Aligned_cols=68 Identities=15% Similarity=0.169 Sum_probs=42.6
Q ss_pred hHHHHHHHHHHhCCC-cEEEeeecCCCCCCCCcceeeCCCC----------ceecHHhHHH--------HHHHHHHHHHc
Q psy15126 17 PLFQVIPMIRKQFPS-LTIACDVCLCGYTSHGHCAIFNEDG----------SIHYEKTLKR--------LADISKAFSDA 77 (300)
Q Consensus 17 ~~~~~i~~ik~~~p~-l~i~~Dvclc~yt~hGHcgi~~~~g----------~i~nd~Tl~~--------l~~~A~~~A~a 77 (300)
.+.++++.+|+++++ +.|+. .+..|||.-++ ++...| -+.+-+-++. +.+-+..+.++
T Consensus 122 ~~leai~~l~~~~~~~~~vig-~v~gP~Tla~~--l~~~~~~~~~~~~~~~~~~~Pe~v~~ll~~~t~~~~~~~~~~~ea 198 (346)
T PRK00115 122 YVLEAVRLLRRELGGEVPLIG-FAGAPWTLATY--MVEGGGSKDYAKTKAMMYAEPELLHALLDKLADATIAYLNAQIEA 198 (346)
T ss_pred HHHHHHHHHHHHhCCCceEEe-eCCcHHHHHHH--HHcCCCCccHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 456789999999985 66665 57889998774 221011 1122233333 34455667789
Q ss_pred CCCccccCCC
Q psy15126 78 GAHIVAPSDM 87 (300)
Q Consensus 78 Gad~vAPSdm 87 (300)
|||+|...|.
T Consensus 199 Gad~i~i~d~ 208 (346)
T PRK00115 199 GAQAVQIFDS 208 (346)
T ss_pred CCCEEEEecC
Confidence 9999976654
No 286
>COG1570 XseA Exonuclease VII, large subunit [DNA replication, recombination, and repair]
Probab=37.79 E-value=1.4e+02 Score=30.90 Aligned_cols=54 Identities=22% Similarity=0.375 Sum_probs=33.1
Q ss_pred HHHHHHHHHhhCCCCCEEeEecccccHHHHHHHhCCCCCHHHHHHHHHHHHHHcC-CCEEEecchH
Q psy15126 226 YLDIISEVKSRHPAYPLFVYQVSGEYAMLAFAAQAGALDLKRALMETLTCLRRGG-ADVIISYYTP 290 (300)
Q Consensus 226 ~ld~Ir~~~d~~~~vpi~aY~vSgeY~~~r~Aa~~~~~n~~eal~E~~~~~~r~G-AD~Ii~y~A~ 290 (300)
-=|+|+.++++||.++|..|.++ =.|- +..+-|.|++..+.+-+ .|+||+--+.
T Consensus 149 irDIl~~~~rR~P~~~viv~pt~----------VQG~-~A~~eIv~aI~~an~~~~~DvlIVaRGG 203 (440)
T COG1570 149 LRDILHTLSRRFPSVEVIVYPTL----------VQGE-GAAEEIVEAIERANQRGDVDVLIVARGG 203 (440)
T ss_pred HHHHHHHHHhhCCCCeEEEEecc----------ccCC-CcHHHHHHHHHHhhccCCCCEEEEecCc
Confidence 45888999999999999999882 1121 22223333333333333 8888876543
No 287
>PRK05848 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=37.60 E-value=1.4e+02 Score=28.66 Aligned_cols=55 Identities=25% Similarity=0.294 Sum_probs=39.8
Q ss_pred ChHHHHHHHHHHhCCC-cEEEeeecCCCCCCCCcceeeCCCCceecHHhHHHHHHHHHHHHHcCCCccccCCCCcchHHH
Q psy15126 16 NPLFQVIPMIRKQFPS-LTIACDVCLCGYTSHGHCAIFNEDGSIHYEKTLKRLADISKAFSDAGAHIVAPSDMMDNRIHA 94 (300)
Q Consensus 16 ~~~~~~i~~ik~~~p~-l~i~~Dvclc~yt~hGHcgi~~~~g~i~nd~Tl~~l~~~A~~~A~aGad~vAPSdmMDgrv~a 94 (300)
|-+.++++.+|+++|. ..|..+|- | .++++.++++|+|+|-.-.|-.-.+..
T Consensus 166 g~i~~~v~~~k~~~p~~~~I~VEv~-----------------------t----leea~~A~~~GaDiI~LDn~~~e~l~~ 218 (273)
T PRK05848 166 KDLKEFIQHARKNIPFTAKIEIECE-----------------------S----LEEAKNAMNAGADIVMCDNMSVEEIKE 218 (273)
T ss_pred CcHHHHHHHHHHhCCCCceEEEEeC-----------------------C----HHHHHHHHHcCCCEEEECCCCHHHHHH
Confidence 4578899999999994 77777542 1 467888999999999876654444444
Q ss_pred HHH
Q psy15126 95 IKQ 97 (300)
Q Consensus 95 ir~ 97 (300)
+.+
T Consensus 219 ~v~ 221 (273)
T PRK05848 219 VVA 221 (273)
T ss_pred HHH
Confidence 444
No 288
>PLN02433 uroporphyrinogen decarboxylase
Probab=37.49 E-value=38 Score=32.50 Aligned_cols=73 Identities=15% Similarity=0.079 Sum_probs=44.6
Q ss_pred hHHHHHHHHHHhCCC-cEEEeeecCCCCCCCCcceeeCC--------CCceecHHhHHHHH--------HHHHHHHHcCC
Q psy15126 17 PLFQVIPMIRKQFPS-LTIACDVCLCGYTSHGHCAIFNE--------DGSIHYEKTLKRLA--------DISKAFSDAGA 79 (300)
Q Consensus 17 ~~~~~i~~ik~~~p~-l~i~~Dvclc~yt~hGHcgi~~~--------~g~i~nd~Tl~~l~--------~~A~~~A~aGa 79 (300)
.+.++|+.+|+++++ +.|+. .|..|||.-++----+. .--..+-+-++++. +-+..+.++||
T Consensus 115 ~~leai~~l~~~~~~~v~iig-~v~gP~Tla~~l~gg~~~~~~~~~~~~l~~~Pe~v~~ll~~it~~~~~~~~~~ieaGa 193 (345)
T PLN02433 115 FVGEALKILRKEVGNEAAVLG-FVGAPWTLATYIVEGGSSKNYKVIKKMAFTAPEVLHALLDKLTDAVIEYVDYQIDAGA 193 (345)
T ss_pred HHHHHHHHHHHHhCCCCceee-eCCcHHHHHHHHHcCCCCccHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 456789999999986 66666 77889998775421000 00112233333333 34556777999
Q ss_pred CccccCCCCcc
Q psy15126 80 HIVAPSDMMDN 90 (300)
Q Consensus 80 d~vAPSdmMDg 90 (300)
+++...|+..+
T Consensus 194 ~~i~i~d~~~~ 204 (345)
T PLN02433 194 QVVQIFDSWAG 204 (345)
T ss_pred CEEEEecCccc
Confidence 99988776544
No 289
>PRK09549 mtnW 2,3-diketo-5-methylthiopentyl-1-phosphate enolase; Reviewed
Probab=37.31 E-value=2.8e+02 Score=28.31 Aligned_cols=83 Identities=23% Similarity=0.233 Sum_probs=49.5
Q ss_pred hHHHHHHHHHhhhcccccCCCCCccccchhhhcCCceeeccCc--------ch---HHHHHHHHH----hhCCCCCEEeE
Q psy15126 181 TLKRLADISKAFSDAVYVPNHNTDRFQARDVSQGADFLMVKPA--------LP---YLDIISEVK----SRHPAYPLFVY 245 (300)
Q Consensus 181 tl~~l~~~a~~~a~~~~~~~~n~~~~~~~Da~~GADivmVkPs--------mm---~ld~Ir~~~----d~~~~vpi~aY 245 (300)
|-+.+++++..+ +..|.|+| |=. ++ ++.++.++. ++.-...+.+-
T Consensus 148 sp~~~a~~~y~~------------------~~GGvD~I--KDDE~l~~q~~~p~~eRv~~~~~a~~~a~~eTG~~~~y~~ 207 (407)
T PRK09549 148 DLDYLKEQLRDQ------------------ALGGVDLV--KDDEILFENALTPFEKRIVAGKEVLQEVYETTGHKTLYAV 207 (407)
T ss_pred CHHHHHHHHHHH------------------HhcCCcce--ecCcCCCCCCCcCHHHHHHHHHHHHHHHHHhhCCcceEEE
Confidence 557788888887 68899998 732 33 444444444 33323444444
Q ss_pred ecccccHHHHHHHhCCCCCHHHHHHHHHHHHHHcCCCEEEecch---HHHHHHHhh
Q psy15126 246 QVSGEYAMLAFAAQAGALDLKRALMETLTCLRRGGADVIISYYT---PRVLEWLRE 298 (300)
Q Consensus 246 ~vSgeY~~~r~Aa~~~~~n~~eal~E~~~~~~r~GAD~Ii~y~A---~~~ld~l~~ 298 (300)
++|+. ..| ++|-..-.+++|+..+|+-+. ...++.|++
T Consensus 208 NiT~~--------------~~e-m~~ra~~a~~~G~~~~m~~~~~~G~~al~~l~~ 248 (407)
T PRK09549 208 NLTGR--------------TFE-LKEKAKRAAEAGADALLFNVFAYGLDVLQSLAE 248 (407)
T ss_pred ecCCC--------------HHH-HHHHHHHHHHcCCCeEEEeccccchHHHHHHHh
Confidence 44442 223 556566666789999998763 344555554
No 290
>TIGR00190 thiC thiamine biosynthesis protein ThiC. The thiC ortholog is designated thiA in Bacillus subtilis.
Probab=37.00 E-value=72 Score=32.91 Aligned_cols=82 Identities=18% Similarity=0.149 Sum_probs=51.0
Q ss_pred hhcCCceeeccCcchHHHHHHHHHhhCCCCCEEe---EecccccHHHHHHHhCCCCCHHHHHHHHHHHHHHcCCCEEEec
Q psy15126 211 VSQGADFLMVKPALPYLDIISEVKSRHPAYPLFV---YQVSGEYAMLAFAAQAGALDLKRALMETLTCLRRGGADVIISY 287 (300)
Q Consensus 211 a~~GADivmVkPsmm~ld~Ir~~~d~~~~vpi~a---Y~vSgeY~~~r~Aa~~~~~n~~eal~E~~~~~~r~GAD~Ii~y 287 (300)
++.|||-||==-.---++.||+..=+...+||-. ||+-.++. +... -++.++.+....... +.|.|++-+.
T Consensus 87 ~~~GADtiMDLStGgdl~~iR~~il~~s~vpvGTVPiYqa~~~~~--~~~~---~mt~d~~~~~ie~qa-~dGVDfmTiH 160 (423)
T TIGR00190 87 IKYGADTVMDLSTGGDLDEIRKAILDAVPVPVGTVPIYQAAEKVH--GAVE---DMDEDDMFRAIEKQA-KDGVDFMTIH 160 (423)
T ss_pred HHcCCCeEeeccCCCCHHHHHHHHHHcCCCCccCccHHHHHHHhc--CChh---hCCHHHHHHHHHHHH-HhCCCEEEEc
Confidence 6899999963222336888888765444577653 55533332 1111 245666666666777 6999998887
Q ss_pred c--hHHHHHHHhh
Q psy15126 288 Y--TPRVLEWLRE 298 (300)
Q Consensus 288 ~--A~~~ld~l~~ 298 (300)
- ..+.++.+++
T Consensus 161 ~Gi~~~~~~~~~~ 173 (423)
T TIGR00190 161 AGVLLEYVERLKR 173 (423)
T ss_pred cchhHHHHHHHHh
Confidence 6 4566666654
No 291
>TIGR01235 pyruv_carbox pyruvate carboxylase. This enzyme plays a role in gluconeogensis but not glycolysis.
Probab=36.89 E-value=1.1e+02 Score=34.88 Aligned_cols=46 Identities=20% Similarity=0.302 Sum_probs=32.2
Q ss_pred hHHHHHHHHHhhhcccccCCCCCccccchhhhcCCceeeccCc--ch----HHHHHHHHHhhCCCCCEEeE
Q psy15126 181 TLKRLADISKAFSDAVYVPNHNTDRFQARDVSQGADFLMVKPA--LP----YLDIISEVKSRHPAYPLFVY 245 (300)
Q Consensus 181 tl~~l~~~a~~~a~~~~~~~~n~~~~~~~Da~~GADivmVkPs--mm----~ld~Ir~~~d~~~~vpi~aY 245 (300)
|++.+.+.+... .++|||.|.+|=. ++ --..++.+++++ ++||-.+
T Consensus 687 ~l~y~~~~ak~l------------------~~~Gad~I~ikDt~Gll~P~~~~~Lv~~lk~~~-~~pi~~H 738 (1143)
T TIGR01235 687 DLKYYTNLAVEL------------------EKAGAHILGIKDMAGLLKPAAAKLLIKALREKT-DLPIHFH 738 (1143)
T ss_pred CHHHHHHHHHHH------------------HHcCCCEEEECCCcCCcCHHHHHHHHHHHHHhc-CCeEEEE
Confidence 477777777765 6889999977653 22 356677777777 7888644
No 292
>TIGR02320 PEP_mutase phosphoenolpyruvate phosphomutase. A closely related enzyme, phosphonopyruvate hydrolase from Variovorax sp. Pal2, is excluded from this model.
Probab=36.75 E-value=1.4e+02 Score=28.79 Aligned_cols=99 Identities=14% Similarity=0.133 Sum_probs=57.9
Q ss_pred CcccchHhHHHHHHHHHhhhcccccC----------CCCCccccchhhhcCCceeec----c-------------Ccch-
Q psy15126 174 GSIHYEKTLKRLADISKAFSDAVYVP----------NHNTDRFQARDVSQGADFLMV----K-------------PALP- 225 (300)
Q Consensus 174 g~i~nd~tl~~l~~~a~~~a~~~~~~----------~~n~~~~~~~Da~~GADivmV----k-------------Psmm- 225 (300)
|.+.-++.+..+..|+-+ +=+| ..|..|.+.+=+++|+.-|.+ . +-+.
T Consensus 59 ~~~~~~e~~~~~~~I~~a----~~~Pv~~D~d~Gg~~~~v~r~V~~l~~aGvaGi~iEDq~~pk~cg~~~~~~~~~l~s~ 134 (285)
T TIGR02320 59 EEASWTQRLDVVEFMFDV----TTKPIILDGDTGGNFEHFRRLVRKLERRGVSAVCIEDKLGLKKNSLFGNDVAQPQASV 134 (285)
T ss_pred CcCCHHHHHHHHHHHHhh----cCCCEEEecCCCCCHHHHHHHHHHHHHcCCeEEEEeccCCCccccccCCCCcccccCH
Confidence 456666666666555433 2334 224555566668899988877 1 2112
Q ss_pred --HHHHHHHHHhh--CCCCCEEeEecccccHHHHHHHhCCCCCHHHHHHHHHHHHHHcCCCEEEec
Q psy15126 226 --YLDIISEVKSR--HPAYPLFVYQVSGEYAMLAFAAQAGALDLKRALMETLTCLRRGGADVIISY 287 (300)
Q Consensus 226 --~ld~Ir~~~d~--~~~vpi~aY~vSgeY~~~r~Aa~~~~~n~~eal~E~~~~~~r~GAD~Ii~y 287 (300)
+++.||.+++. -++++|.+=.=+-. . . ...+|+|.- .+..+++|||+|++-
T Consensus 135 ee~~~kI~Aa~~a~~~~~~~IiARTDa~~-~------~---~~~~eAi~R-a~ay~eAGAD~ifv~ 189 (285)
T TIGR02320 135 EEFCGKIRAGKDAQTTEDFMIIARVESLI-L------G---KGMEDALKR-AEAYAEAGADGIMIH 189 (285)
T ss_pred HHHHHHHHHHHHhccCCCeEEEEeccccc-c------c---CCHHHHHHH-HHHHHHcCCCEEEec
Confidence 67888887765 34677776521100 0 0 124566544 555558999999986
No 293
>TIGR01949 AroFGH_arch predicted phospho-2-dehydro-3-deoxyheptonate aldolase. Together these two genes appear to perform the synthesis of 3-dehydroquinate. It is presumed that the substrates and the chemical transformations involved are identical, but this has not yet been proven experimentally.
Probab=36.63 E-value=2e+02 Score=26.44 Aligned_cols=31 Identities=26% Similarity=0.386 Sum_probs=23.4
Q ss_pred hhcCCceeeccCcch-HHHHHHHHHhhCCCCCEEe
Q psy15126 211 VSQGADFLMVKPALP-YLDIISEVKSRHPAYPLFV 244 (300)
Q Consensus 211 a~~GADivmVkPsmm-~ld~Ir~~~d~~~~vpi~a 244 (300)
.++|||+| |.+.. -++.++++.+.. .+||.+
T Consensus 166 ~~~GADyi--kt~~~~~~~~l~~~~~~~-~iPVva 197 (258)
T TIGR01949 166 AELGADIV--KTPYTGDIDSFRDVVKGC-PAPVVV 197 (258)
T ss_pred HHHCCCEE--eccCCCCHHHHHHHHHhC-CCcEEE
Confidence 57999999 66633 478889888864 589865
No 294
>PRK10046 dpiA two-component response regulator DpiA; Provisional
Probab=36.36 E-value=1.4e+02 Score=25.97 Aligned_cols=51 Identities=12% Similarity=0.230 Sum_probs=36.9
Q ss_pred hhcCCceeeccCcch---HHHHHHHHHhhCCCCCEEeEecccccHHHHHHHhCC
Q psy15126 211 VSQGADFLMVKPALP---YLDIISEVKSRHPAYPLFVYQVSGEYAMLAFAAQAG 261 (300)
Q Consensus 211 a~~GADivmVkPsmm---~ld~Ir~~~d~~~~vpi~aY~vSgeY~~~r~Aa~~~ 261 (300)
.+...|+|++-..|+ -++.+++++..+++.||...+..........+.+.|
T Consensus 47 ~~~~pdlvllD~~mp~~~gle~~~~l~~~~~~~~iivls~~~~~~~~~~al~~G 100 (225)
T PRK10046 47 ERFKPGLILLDNYLPDGRGINLLHELVQAHYPGDVVFTTAASDMETVSEAVRCG 100 (225)
T ss_pred HhcCCCEEEEeCCCCCCcHHHHHHHHHhcCCCCCEEEEEcCCCHHHHHHHHHcC
Confidence 456689998876654 688999998876778999887655555555565554
No 295
>PRK15479 transcriptional regulatory protein TctD; Provisional
Probab=36.18 E-value=1.9e+02 Score=23.80 Aligned_cols=49 Identities=12% Similarity=0.263 Sum_probs=33.6
Q ss_pred cCCceeeccCcch---HHHHHHHHHhhCCCCCEEeEecccccHHHHHHHhCC
Q psy15126 213 QGADFLMVKPALP---YLDIISEVKSRHPAYPLFVYQVSGEYAMLAFAAQAG 261 (300)
Q Consensus 213 ~GADivmVkPsmm---~ld~Ir~~~d~~~~vpi~aY~vSgeY~~~r~Aa~~~ 261 (300)
...|+|++...++ -++.++.++...++.|++.-+....+.....+.+.|
T Consensus 43 ~~~d~vild~~~~~~~~~~~~~~i~~~~~~~~ii~lt~~~~~~~~~~~~~~g 94 (221)
T PRK15479 43 EMYALAVLDINMPGMDGLEVLQRLRKRGQTLPVLLLTARSAVADRVKGLNVG 94 (221)
T ss_pred CCCCEEEEeCCCCCCcHHHHHHHHHhcCCCCCEEEEECCCCHHHHHHHHHcC
Confidence 4579998876644 577888887776788988875555555555565554
No 296
>PF02574 S-methyl_trans: Homocysteine S-methyltransferase; InterPro: IPR003726 S-methylmethionine: homocysteine methyltransferase 2.1.1.10 from EC from Escherichia coli accepts selenohomocysteine as a substrate. S-methylmethionine is an abundant plant product that can be utilised for methionine biosynthesis []. Human methionine synthase (5-methyltetrahydrofolate:L-homocysteine S-transmethylase; 2.1.1.13 from EC) shares 53 and 63% identity with the E. coli and the presumptive Caenorhabditis elegans proteins, respectively, and contains all residues implicated in B12 binding to the E. coli protein []. Betaine--homocysteine S-methyltransferase (2.1.1.5 from EC) converts betaine and homocysteine to dimethylglycine and methionine, respectively. This reaction is also required for the irreversible oxidation of choline [].; GO: 0008898 homocysteine S-methyltransferase activity; PDB: 1UMY_A 1LT8_B 1LT7_B 3BOF_B 1Q7Q_B 1Q85_B 1Q7Z_A 1Q7M_A 1Q8A_B 1Q8J_B ....
Probab=35.79 E-value=37 Score=31.82 Aligned_cols=23 Identities=17% Similarity=0.154 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHcCCCEEEec
Q psy15126 265 LKRALMETLTCLRRGGADVIISY 287 (300)
Q Consensus 265 ~~eal~E~~~~~~r~GAD~Ii~y 287 (300)
..+.|+++.+++.++|||+|.|.
T Consensus 39 ~p~~v~~iH~~yl~AGAdiI~Tn 61 (305)
T PF02574_consen 39 NPELVRQIHRDYLEAGADIITTN 61 (305)
T ss_dssp -HHHHHHHHHHHHHHT-SEEEEC
T ss_pred CHHHHHHHHHHHHHCCCCeEEec
Confidence 47899999999999999999985
No 297
>PF06838 Met_gamma_lyase: Methionine gamma-lyase ; InterPro: IPR009651 This family represents the aluminium resistance protein, which confers resistance to aluminium in bacteria [].; PDB: 3JZL_A 3I16_C 3GWP_A 3FD0_B 3HT4_F.
Probab=35.56 E-value=44 Score=34.18 Aligned_cols=30 Identities=17% Similarity=0.423 Sum_probs=24.9
Q ss_pred hHHHHHHHHHHhCCCcEEEeeecCCCCCCC
Q psy15126 17 PLFQVIPMIRKQFPSLTIACDVCLCGYTSH 46 (300)
Q Consensus 17 ~~~~~i~~ik~~~p~l~i~~Dvclc~yt~h 46 (300)
-+.++|+.+|+..|+++|+.|=|--+|+-.
T Consensus 176 ~I~~~i~~vk~~~p~~iifVDNCYGEFvE~ 205 (403)
T PF06838_consen 176 EIKEIIKFVKEINPDVIIFVDNCYGEFVET 205 (403)
T ss_dssp HHHHHHHHHHHH-TTSEEEEE-TTTTTTSS
T ss_pred HHHHHHHHHHhhCCCeEEEEeCCcceeccc
Confidence 367899999999999999999999999754
No 298
>PRK05742 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=35.48 E-value=1.8e+02 Score=27.94 Aligned_cols=68 Identities=24% Similarity=0.254 Sum_probs=39.9
Q ss_pred cCCCCCccccchhhhcCCceeeccCcchHHHHHHHHHhhC-CCCCEEeEecccccHHHHHHHhCCCCCHHHHHHHHHHHH
Q psy15126 198 VPNHNTDRFQARDVSQGADFLMVKPALPYLDIISEVKSRH-PAYPLFVYQVSGEYAMLAFAAQAGALDLKRALMETLTCL 276 (300)
Q Consensus 198 ~~~~n~~~~~~~Da~~GADivmVkPsmm~ld~Ir~~~d~~-~~vpi~aY~vSgeY~~~r~Aa~~~~~n~~eal~E~~~~~ 276 (300)
|--+|.+...+ =+++|||+||.-+ |-.+.++++.+.. +++|+.+= |-+|.+ .+..+
T Consensus 194 VEv~tleea~e-A~~~gaD~I~LD~--~~~e~l~~~v~~~~~~i~leAs---------------GGIt~~-----ni~~~ 250 (277)
T PRK05742 194 VEVESLDELRQ-ALAAGADIVMLDE--LSLDDMREAVRLTAGRAKLEAS---------------GGINES-----TLRVI 250 (277)
T ss_pred EEeCCHHHHHH-HHHcCCCEEEECC--CCHHHHHHHHHHhCCCCcEEEE---------------CCCCHH-----HHHHH
Confidence 34455444322 2578999998844 3444555554432 46787653 335643 33455
Q ss_pred HHcCCCEEEecc
Q psy15126 277 RRGGADVIISYY 288 (300)
Q Consensus 277 ~r~GAD~Ii~y~ 288 (300)
...|+|.|-+-.
T Consensus 251 a~tGvD~Isvg~ 262 (277)
T PRK05742 251 AETGVDYISIGA 262 (277)
T ss_pred HHcCCCEEEECh
Confidence 578999997643
No 299
>PRK08508 biotin synthase; Provisional
Probab=35.45 E-value=2.1e+02 Score=26.78 Aligned_cols=41 Identities=22% Similarity=0.284 Sum_probs=27.7
Q ss_pred HHHHHHHHHhhCCCCCEEeEecccccHHHHHHHhCCCCCHHHHHHHHHHHHHHcCCCEEE
Q psy15126 226 YLDIISEVKSRHPAYPLFVYQVSGEYAMLAFAAQAGALDLKRALMETLTCLRRGGADVII 285 (300)
Q Consensus 226 ~ld~Ir~~~d~~~~vpi~aY~vSgeY~~~r~Aa~~~~~n~~eal~E~~~~~~r~GAD~Ii 285 (300)
+++++|.+++++|++.+.+- .|..+ .|.++.++++|+|.+-
T Consensus 77 ~~ei~~~ik~~~p~l~i~~s--------------~G~~~-----~e~l~~Lk~aGld~~~ 117 (279)
T PRK08508 77 VAEAAKAVKKEVPGLHLIAC--------------NGTAS-----VEQLKELKKAGIFSYN 117 (279)
T ss_pred HHHHHHHHHhhCCCcEEEec--------------CCCCC-----HHHHHHHHHcCCCEEc
Confidence 78999999988877776432 23333 5566667677777665
No 300
>PF12010 DUF3502: Domain of unknown function (DUF3502); InterPro: IPR022627 This domain is about 140 amino acids in length and is functionally uncharacterised. It is found in bacteria C-terminal to PF01547 from PFAM.
Probab=35.36 E-value=67 Score=27.15 Aligned_cols=74 Identities=20% Similarity=0.259 Sum_probs=54.9
Q ss_pred HHHHHHHHHhhCCCCCEEeEec-----ccccHHHH-------HHHhCCCCCHHHHHHHHHHHHHHcCCCEEEecchHHHH
Q psy15126 226 YLDIISEVKSRHPAYPLFVYQV-----SGEYAMLA-------FAAQAGALDLKRALMETLTCLRRGGADVIISYYTPRVL 293 (300)
Q Consensus 226 ~ld~Ir~~~d~~~~vpi~aY~v-----SgeY~~~r-------~Aa~~~~~n~~eal~E~~~~~~r~GAD~Ii~y~A~~~l 293 (300)
..+..++..+....-|++.+.. ..|.+-+. .+...|..|.++++-|....++.||-|=||.-.-.++-
T Consensus 48 ~~~~~~~~n~~~~~s~~~GF~fD~s~Vk~Eiaa~~~v~~~Y~~~L~~G~vd~e~~~~~~~~kLk~AGidkV~~E~QkQld 127 (134)
T PF12010_consen 48 KWEQYEEFNDNAKPSPLLGFTFDPSPVKNEIAACSNVWSEYYPPLETGLVDPEEALPEFNEKLKAAGIDKVIAELQKQLD 127 (134)
T ss_pred HHHHHHHHHhhCccCcccCeeECCchhHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHhChHHHHHHHHHHHH
Confidence 5666666666655567777654 34444433 33457999999999999999999999999988888888
Q ss_pred HHHhhC
Q psy15126 294 EWLRED 299 (300)
Q Consensus 294 d~l~~~ 299 (300)
.|+..-
T Consensus 128 a~~~~~ 133 (134)
T PF12010_consen 128 AFLAAN 133 (134)
T ss_pred HHHHhc
Confidence 887654
No 301
>TIGR00737 nifR3_yhdG putative TIM-barrel protein, nifR3 family. Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.
Probab=35.30 E-value=1.5e+02 Score=28.11 Aligned_cols=48 Identities=19% Similarity=0.099 Sum_probs=28.3
Q ss_pred HHHHHHHHhhCCCCCEEeEecccccHHHHHHHhCCCCCHHHHHHHHHHHHHHcCCCEEEec
Q psy15126 227 LDIISEVKSRHPAYPLFVYQVSGEYAMLAFAAQAGALDLKRALMETLTCLRRGGADVIISY 287 (300)
Q Consensus 227 ld~Ir~~~d~~~~vpi~aY~vSgeY~~~r~Aa~~~~~n~~eal~E~~~~~~r~GAD~Ii~y 287 (300)
.++++.+++.. ++||.+.- +. ||-+...-..|....+.+.|+|.|.+.
T Consensus 120 ~ei~~~vr~~~-~~pv~vKi-r~-----------g~~~~~~~~~~~a~~l~~~G~d~i~vh 167 (319)
T TIGR00737 120 GKIVKAVVDAV-DIPVTVKI-RI-----------GWDDAHINAVEAARIAEDAGAQAVTLH 167 (319)
T ss_pred HHHHHHHHhhc-CCCEEEEE-Ec-----------ccCCCcchHHHHHHHHHHhCCCEEEEE
Confidence 45666666654 68887663 21 222211223566666667899999764
No 302
>PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=35.25 E-value=90 Score=28.69 Aligned_cols=60 Identities=17% Similarity=0.075 Sum_probs=43.5
Q ss_pred HHHHHHhhhcccccCCCCCccccchhhhcCCceeeccCcchH--HHHHHHHHhhCCCCCEEeE
Q psy15126 185 LADISKAFSDAVYVPNHNTDRFQARDVSQGADFLMVKPALPY--LDIISEVKSRHPAYPLFVY 245 (300)
Q Consensus 185 l~~~a~~~a~~~~~~~~n~~~~~~~Da~~GADivmVkPsmm~--ld~Ir~~~d~~~~vpi~aY 245 (300)
+.+.+.. ....|+|---|-.=...=.+.|||+|=+=|+... ...|+.++.=||++|+|+=
T Consensus 89 vi~~a~~-~~i~~iPG~~TptEi~~A~~~Ga~~vK~FPa~~~GG~~yikal~~plp~~~l~pt 150 (201)
T PRK06015 89 LLAAAND-SDVPLLPGAATPSEVMALREEGYTVLKFFPAEQAGGAAFLKALSSPLAGTFFCPT 150 (201)
T ss_pred HHHHHHH-cCCCEeCCCCCHHHHHHHHHCCCCEEEECCchhhCCHHHHHHHHhhCCCCcEEec
Confidence 4444443 3678888877766666668999999988897332 5667777767899999964
No 303
>PF03808 Glyco_tran_WecB: Glycosyl transferase WecB/TagA/CpsF family; InterPro: IPR004629 The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in Enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.; GO: 0009058 biosynthetic process
Probab=35.11 E-value=1e+02 Score=26.85 Aligned_cols=68 Identities=13% Similarity=0.208 Sum_probs=41.1
Q ss_pred hcCCceeeccCcchHHHHHHHHH-hhCCCCCEEeEecccccHHHHHHHhCCCCCHHHHHHHHHHHHHHcCCCEEEecchH
Q psy15126 212 SQGADFLMVKPALPYLDIISEVK-SRHPAYPLFVYQVSGEYAMLAFAAQAGALDLKRALMETLTCLRRGGADVIISYYTP 290 (300)
Q Consensus 212 ~~GADivmVkPsmm~ld~Ir~~~-d~~~~vpi~aY~vSgeY~~~r~Aa~~~~~n~~eal~E~~~~~~r~GAD~Ii~y~A~ 290 (300)
+.|--+..+..+--.++.+.+.+ ++||++.|..+.. | +.+. +...+.+..|++.|+|+|++--+.
T Consensus 46 ~~~~~ifllG~~~~~~~~~~~~l~~~yP~l~ivg~~~-g------------~f~~-~~~~~i~~~I~~~~pdiv~vglG~ 111 (172)
T PF03808_consen 46 QRGKRIFLLGGSEEVLEKAAANLRRRYPGLRIVGYHH-G------------YFDE-EEEEAIINRINASGPDIVFVGLGA 111 (172)
T ss_pred HcCCeEEEEeCCHHHHHHHHHHHHHHCCCeEEEEecC-C------------CCCh-hhHHHHHHHHHHcCCCEEEEECCC
Confidence 34455555566544555444444 4488888887642 2 2232 334666778888999999997665
Q ss_pred HHH
Q psy15126 291 RVL 293 (300)
Q Consensus 291 ~~l 293 (300)
+-.
T Consensus 112 PkQ 114 (172)
T PF03808_consen 112 PKQ 114 (172)
T ss_pred CHH
Confidence 543
No 304
>TIGR02154 PhoB phosphate regulon transcriptional regulatory protein PhoB. PhoB is a DNA-binding response regulator protein acting with PhoR in a 2-component system responding to phosphate ion. PhoB acts as a positive regulator of gene expression for phosphate-related genes such as phoA, phoS, phoE and ugpAB as well as itself. It is often found proximal to genes for the high-affinity phosphate ABC transporter (pstSCAB; GenProp0190) and presumably regulates these as well.
Probab=35.03 E-value=1.7e+02 Score=24.05 Aligned_cols=50 Identities=20% Similarity=0.416 Sum_probs=32.6
Q ss_pred hcCCceeeccCcch---HHHHHHHHHhh--CCCCCEEeEecccccHHHHHHHhCC
Q psy15126 212 SQGADFLMVKPALP---YLDIISEVKSR--HPAYPLFVYQVSGEYAMLAFAAQAG 261 (300)
Q Consensus 212 ~~GADivmVkPsmm---~ld~Ir~~~d~--~~~vpi~aY~vSgeY~~~r~Aa~~~ 261 (300)
+...|+|++-..++ -++.+++++.. .+.+||+..+..........+.+.|
T Consensus 44 ~~~~d~vi~d~~~~~~~g~~~~~~l~~~~~~~~~~ii~ls~~~~~~~~~~~~~~G 98 (226)
T TIGR02154 44 ERGPDLILLDWMLPGTSGIELCRRLRRRPETRAIPIIMLTARGEEEDRVRGLETG 98 (226)
T ss_pred hcCCCEEEEECCCCCCcHHHHHHHHHccccCCCCCEEEEecCCCHHHHHHHHhcC
Confidence 34589998875543 67888888765 4679999886543344444555544
No 305
>cd07941 DRE_TIM_LeuA3 Desulfobacterium autotrophicum LeuA3 and related proteins, N-terminal catalytic TIM barrel domain. Desulfobacterium autotrophicum LeuA3 is sequence-similar to alpha-isopropylmalate synthase (LeuA) but its exact function is unknown. Members of this family have an N-terminal TIM barrel domain that belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of in
Probab=34.73 E-value=2e+02 Score=26.85 Aligned_cols=27 Identities=7% Similarity=0.150 Sum_probs=20.9
Q ss_pred eecHHhHHHHHHHHHHHHHcCCCcccc
Q psy15126 58 IHYEKTLKRLADISKAFSDAGAHIVAP 84 (300)
Q Consensus 58 i~nd~Tl~~l~~~A~~~A~aGad~vAP 84 (300)
.....|.+.-.+.+..+.++|++.|--
T Consensus 13 ~~~~~s~e~k~~i~~~L~~~Gv~~IE~ 39 (273)
T cd07941 13 EGISFSVEDKLRIARKLDELGVDYIEG 39 (273)
T ss_pred CCCCCCHHHHHHHHHHHHHcCCCEEEe
Confidence 445678888888888888888888754
No 306
>cd04727 pdxS PdxS is a subunit of the pyridoxal 5'-phosphate (PLP) synthase, an important enzyme in deoxyxylulose 5-phosphate (DXP)-independent pathway for de novo biosynthesis of PLP, present in some eubacteria, in archaea, fungi, plants, plasmodia, and some metazoa. Together with PdxT, PdxS forms the PLP synthase, a heteromeric glutamine amidotransferase (GATase), whereby PdxT produces ammonia from glutamine and PdxS combines ammonia with five- and three-carbon phosphosugars to form PLP. PLP is the biologically active form of vitamin B6, an essential cofactor in many biochemical processes. PdxS subunits form two hexameric rings.
Probab=34.36 E-value=91 Score=30.54 Aligned_cols=54 Identities=20% Similarity=0.202 Sum_probs=38.6
Q ss_pred hhcCCceeeccCcc---hHHHHHHHHHhhCCCCCEEeEecccccHHHHHHHhCCCCCHHHHHHHHHHHHHHcCCCEEEec
Q psy15126 211 VSQGADFLMVKPAL---PYLDIISEVKSRHPAYPLFVYQVSGEYAMLAFAAQAGALDLKRALMETLTCLRRGGADVIISY 287 (300)
Q Consensus 211 a~~GADivmVkPsm---m~ld~Ir~~~d~~~~vpi~aY~vSgeY~~~r~Aa~~~~~n~~eal~E~~~~~~r~GAD~Ii~y 287 (300)
+++|+||| .-+. +--+.++..|..| ++|+|+=- .+.. |.+..+ ++|||+|=|+
T Consensus 84 ~eaGvDiI--DaT~r~rP~~~~~~~iK~~~-~~l~MAD~----------------stle----Eal~a~-~~Gad~I~TT 139 (283)
T cd04727 84 EALGVDMI--DESEVLTPADEEHHIDKHKF-KVPFVCGA----------------RNLG----EALRRI-SEGAAMIRTK 139 (283)
T ss_pred HHcCCCEE--eccCCCCcHHHHHHHHHHHc-CCcEEccC----------------CCHH----HHHHHH-HCCCCEEEec
Confidence 68999999 4332 2235777888888 89999752 3554 455677 7999999887
Q ss_pred c
Q psy15126 288 Y 288 (300)
Q Consensus 288 ~ 288 (300)
-
T Consensus 140 l 140 (283)
T cd04727 140 G 140 (283)
T ss_pred C
Confidence 4
No 307
>cd01571 NAPRTase_B Nicotinate phosphoribosyltransferase (NAPRTase), subgroup B. Nicotinate phosphoribosyltransferase catalyses the formation of NAMN and PPi from 5-phosphoribosy -1-pyrophosphate (PRPP) and nicotinic acid, this is the first, and also rate limiting, reaction in the NAD salvage synthesis. This salvage pathway serves to recycle NAD degradation products.
Probab=33.76 E-value=90 Score=29.99 Aligned_cols=68 Identities=10% Similarity=0.062 Sum_probs=42.5
Q ss_pred HHHHHHHHHHhCC-Cc--EEEeeecCCCCCCCCcceeeCCCCceecHHhHHHHHHHHHHHHHcC---CCccccCCC----
Q psy15126 18 LFQVIPMIRKQFP-SL--TIACDVCLCGYTSHGHCAIFNEDGSIHYEKTLKRLADISKAFSDAG---AHIVAPSDM---- 87 (300)
Q Consensus 18 ~~~~i~~ik~~~p-~l--~i~~Dvclc~yt~hGHcgi~~~~g~i~nd~Tl~~l~~~A~~~A~aG---ad~vAPSdm---- 87 (300)
+.+|+++.|+.+| +. .|=+| |++..++.|+..+++| +|+|-.-.|
T Consensus 170 ~~~A~~~~~~~~p~~~~i~vevd-------------------------t~~~~v~eal~~~~~~~~~~d~I~lDn~~~~~ 224 (302)
T cd01571 170 QVEAWKAFDETYPEDVPRIALID-------------------------TFNDEKEEALKAAKALGDKLDGVRLDTPSSRR 224 (302)
T ss_pred HHHHHHHHHHHCCCcCCeEEEEe-------------------------ecCcchHHHHHHHHHhCCCCcEEEECCCCCCC
Confidence 6789999999999 32 33222 1111235677777775 676654322
Q ss_pred --CcchHHHHHHHHhhCCCCCCcccc
Q psy15126 88 --MDNRIHAIKQSLFTSRQSSTTGLL 111 (300)
Q Consensus 88 --MDgrv~air~aLd~~g~~~~v~Im 111 (300)
....+..+|++|+..|+ .++-|.
T Consensus 225 G~~~~~~~~~~~~l~~~g~-~~~~ie 249 (302)
T cd01571 225 GVFRYLIREVRWALDIRGY-KHVKIF 249 (302)
T ss_pred CCHHHHHHHHHHHHHhCCC-CCeEEE
Confidence 22238999999999887 454443
No 308
>cd00957 Transaldolase_TalAB Transaldolases including both TalA and TalB. The enzyme catalyses the reversible transfer of a dyhydroxyacetone moiety, derived from fructose-6-phosphate to erythrose-4-phosphate yielding sedoheptulose-7-phosphate and glyceraldehyde-3-phosphate. The catalytic mechanism is similar to other class I aldolases. The enzyme is found in the non-oxidative branch of the pentose phosphate pathway and forms a dimer in solution.
Probab=33.66 E-value=42 Score=32.81 Aligned_cols=47 Identities=19% Similarity=0.246 Sum_probs=31.0
Q ss_pred hHHHHHHHHHHHHHcCCCcccc--CCCCc------c-------------hHHHHHHHHhhCCCCCCcccc
Q psy15126 63 TLKRLADISKAFSDAGAHIVAP--SDMMD------N-------------RIHAIKQSLFTSRQSSTTGLL 111 (300)
Q Consensus 63 Tl~~l~~~A~~~A~aGad~vAP--SdmMD------g-------------rv~air~aLd~~g~~~~v~Im 111 (300)
|+--=..||+..|+||+..|+| +-+.| | .|..|.+.++..|+ ++-||
T Consensus 154 TlvFS~~Qa~~aa~AGa~~ISPfVgRi~d~~~~~~~~~~~~~~~d~Gv~~v~~i~~~~~~~~~--~T~vm 221 (313)
T cd00957 154 TLLFSFAQAVACAEAGVTLISPFVGRILDWYKKHSGDKAYTAEEDPGVASVKKIYNYYKKFGY--KTKVM 221 (313)
T ss_pred eeecCHHHHHHHHHcCCCEEEeecchHHHhhhhccccccCCccCCcHHHHHHHHHHHHHHcCC--CcEEE
Confidence 3333457999999999999999 22222 1 25666666666777 34566
No 309
>cd00959 DeoC 2-deoxyribose-5-phosphate aldolase (DERA) of the DeoC family. DERA belongs to the class I aldolases and catalyzes a reversible aldol reaction between acetaldehyde and glyceraldehyde 3-phosphate to generate 2-deoxyribose 5-phosphate. DERA is unique in catalyzing the aldol reaction between two aldehydes, and its broad substrate specificity confers considerable utility as a biocatalyst, offering an environmentally benign alternative to chiral transition metal catalysis of the asymmetric aldol reaction.
Probab=33.66 E-value=2.8e+02 Score=24.57 Aligned_cols=63 Identities=22% Similarity=0.219 Sum_probs=34.3
Q ss_pred hcCCceeeccCcchHHHHHHHHHhhCCCCCEEeEecccccHHHHHHHhCCCCCHHHHHHHHHHHHHHcCCCEEEecc
Q psy15126 212 SQGADFLMVKPALPYLDIISEVKSRHPAYPLFVYQVSGEYAMLAFAAQAGALDLKRALMETLTCLRRGGADVIISYY 288 (300)
Q Consensus 212 ~~GADivmVkPsmm~ld~Ir~~~d~~~~vpi~aY~vSgeY~~~r~Aa~~~~~n~~eal~E~~~~~~r~GAD~Ii~y~ 288 (300)
+.|+|-|+|-|.+ +...++.+. +.++..-.+-++ -.|....+.-+.|+...+ |.|||-|-+..
T Consensus 28 ~~~~~av~v~p~~--v~~~~~~l~---~~~~~v~~~~~f--------p~g~~~~~~k~~eve~A~-~~GAdevdvv~ 90 (203)
T cd00959 28 EYGFAAVCVNPCF--VPLAREALK---GSGVKVCTVIGF--------PLGATTTEVKVAEAREAI-ADGADEIDMVI 90 (203)
T ss_pred HcCCCEEEEcHHH--HHHHHHHcC---CCCcEEEEEEec--------CCCCCcHHHHHHHHHHHH-HcCCCEEEEee
Confidence 4589999888873 333444433 334444433111 112233455666666666 68888776644
No 310
>cd07939 DRE_TIM_NifV Streptomyces rubellomurinus FrbC and related proteins, catalytic TIM barrel domain. FrbC (NifV) of Streptomyces rubellomurinus catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate and CoA, a reaction similar to one catalyzed by homocitrate synthase. The gene encoding FrbC is one of several genes required for the biosynthesis of FR900098, a potent antimalarial antibiotic. This protein is also required for assembly of the nitrogenase MoFe complex but its exact role is unknown. This family also includes the NifV proteins of Heliobacterium chlorum and Gluconacetobacter diazotrophicus, which appear to be orthologous to FrbC. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarbox
Probab=33.62 E-value=2.4e+02 Score=25.94 Aligned_cols=26 Identities=15% Similarity=0.194 Sum_probs=20.2
Q ss_pred ecHHhHHHHHHHHHHHHHcCCCcccc
Q psy15126 59 HYEKTLKRLADISKAFSDAGAHIVAP 84 (300)
Q Consensus 59 ~nd~Tl~~l~~~A~~~A~aGad~vAP 84 (300)
....|.+...+.+..+.++|++.|--
T Consensus 14 ~~~~~~~~k~~i~~~L~~~Gv~~iE~ 39 (259)
T cd07939 14 GVAFSREEKLAIARALDEAGVDEIEV 39 (259)
T ss_pred CCCCCHHHHHHHHHHHHHcCCCEEEE
Confidence 34678888888888888888888754
No 311
>PRK00881 purH bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase; Provisional
Probab=33.51 E-value=24 Score=36.94 Aligned_cols=71 Identities=17% Similarity=0.343 Sum_probs=41.6
Q ss_pred HHHHHHHcCCCcccc------CCCCcchHHHH-----------------HHHHhhCCCCCCcccccchhhhhcccchhhh
Q psy15126 70 ISKAFSDAGAHIVAP------SDMMDNRIHAI-----------------KQSLFTSRQSSTTGLLSYSAKFCSAFYGPFR 126 (300)
Q Consensus 70 ~A~~~A~aGad~vAP------SdmMDgrv~ai-----------------r~aLd~~g~~~~v~ImsysaK~aS~~YGPfR 126 (300)
.+..+.+.|+++..- -.||||||..+ .+.|.+.|. ..+-++ .-.|| ||+
T Consensus 37 Tak~L~e~GI~v~~V~k~TgfpEil~GRVKTLHP~IhgGiLa~r~~~~h~~~l~~~~i-~~IDlV------vvNLY-PF~ 108 (513)
T PRK00881 37 TAKLLAEAGIPVTEVSDVTGFPEILDGRVKTLHPKIHGGILARRDNPEHVAALEEHGI-EPIDLV------VVNLY-PFE 108 (513)
T ss_pred HHHHHHHCCCeeEEeecccCCchhcCCccccCCchhhhhhccCCCCHHHHHHHHHcCC-CceeEE------EEeCc-ChH
Confidence 344455555554433 45999998643 456777777 444433 34677 999
Q ss_pred hhhcCCCCCCCcceeeCCCCCC
Q psy15126 127 EAAGSAPTFGDRSCYQLPCGSK 148 (300)
Q Consensus 127 da~gS~~~~gdr~~yQ~~~~~~ 148 (300)
+++.+....-+..+=++|-+.|
T Consensus 109 ~tv~~~~~~~~~~iEnIDIGGp 130 (513)
T PRK00881 109 ETVAKPGVTLEEAIENIDIGGP 130 (513)
T ss_pred HHhccCCCCHHHHHhcccCCcH
Confidence 9986632222455556664433
No 312
>cd08209 RLP_DK-MTP-1-P-enolase 2,3-diketo-5-methylthiopentyl-1-phosphate enolase. Ribulose bisphosphate carboxylase like proteins (RLPs) similar to B. subtilis YkrW protein, have been identified as 2,3-diketo-5-methylthiopentyl-1-phosphate enolases. They catalyze the tautomerization of 2,3-diketo-5-methylthiopentane 1-phosphate (DK-MTP 1-P). This is an important step in the methionine salvage pathway in which 5-methylthio-D-ribose (MTR) derived from 5'-methylthioadenosine is converted to methionine.
Probab=33.48 E-value=3.2e+02 Score=27.75 Aligned_cols=83 Identities=23% Similarity=0.267 Sum_probs=50.5
Q ss_pred hHHHHHHHHHhhhcccccCCCCCccccchhhhcCCceeeccCc--------ch---HHHHHHHHH----hhCCCCCEEeE
Q psy15126 181 TLKRLADISKAFSDAVYVPNHNTDRFQARDVSQGADFLMVKPA--------LP---YLDIISEVK----SRHPAYPLFVY 245 (300)
Q Consensus 181 tl~~l~~~a~~~a~~~~~~~~n~~~~~~~Da~~GADivmVkPs--------mm---~ld~Ir~~~----d~~~~vpi~aY 245 (300)
|.+.+++++..+ +..|.|+| |=. .+ ++.++.++. ++.-...+.+-
T Consensus 138 sp~~~a~~~y~~------------------~~GGvD~I--KDDE~l~~q~~~p~~eRv~a~~~a~~~a~~eTG~~~~ya~ 197 (391)
T cd08209 138 DLDDLAEQLREQ------------------ALGGVDLI--KDDEILFDNPLAPALERIRACRPVLQEVYEQTGRRTLYAV 197 (391)
T ss_pred CHHHHHHHHHHH------------------HhCCCCcc--cccccCCCCCCCCHHHHHHHHHHHHHHHHHhhCCcceEEE
Confidence 557788888887 68899998 743 22 444444444 33323445555
Q ss_pred ecccccHHHHHHHhCCCCCHHHHHHHHHHHHHHcCCCEEEecch---HHHHHHHhh
Q psy15126 246 QVSGEYAMLAFAAQAGALDLKRALMETLTCLRRGGADVIISYYT---PRVLEWLRE 298 (300)
Q Consensus 246 ~vSgeY~~~r~Aa~~~~~n~~eal~E~~~~~~r~GAD~Ii~y~A---~~~ld~l~~ 298 (300)
++|+.. +-++|-..-.+++|++.+|+-+. ...++.|++
T Consensus 198 NiT~~~---------------~em~~ra~~~~~~G~~~~mv~~~~~G~~~l~~l~~ 238 (391)
T cd08209 198 NLTGPV---------------FTLKEKARRLVEAGANALLFNVFAYGLDVLEALAS 238 (391)
T ss_pred EcCCCH---------------HHHHHHHHHHHHhCCCEEEEeccccchHHHHHHHh
Confidence 555432 33455555556789999998773 445555654
No 313
>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed
Probab=33.18 E-value=6.3e+02 Score=27.19 Aligned_cols=24 Identities=8% Similarity=0.195 Sum_probs=19.1
Q ss_pred HHhHHHHHHHHHHHHHcCCCcccc
Q psy15126 61 EKTLKRLADISKAFSDAGAHIVAP 84 (300)
Q Consensus 61 d~Tl~~l~~~A~~~A~aGad~vAP 84 (300)
+..++..++.|+.+.++|.|.|-.
T Consensus 547 ~~~i~~f~~aA~~a~~aGfDgvei 570 (765)
T PRK08255 547 DRVRDDFVAAARRAAEAGFDWLEL 570 (765)
T ss_pred HHHHHHHHHHHHHHHHcCCCEEEE
Confidence 346677778888899999999855
No 314
>TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase. at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase.
Probab=32.97 E-value=1e+02 Score=26.82 Aligned_cols=32 Identities=22% Similarity=0.243 Sum_probs=20.1
Q ss_pred hhcCCceeeccCcch--H-HHHHHHHHhhCCCCCEEe
Q psy15126 211 VSQGADFLMVKPALP--Y-LDIISEVKSRHPAYPLFV 244 (300)
Q Consensus 211 a~~GADivmVkPsmm--~-ld~Ir~~~d~~~~vpi~a 244 (300)
+++|||+|.+-.... . ...++.+++ + +.+++.
T Consensus 73 ~~~Gad~i~vh~~~~~~~~~~~i~~~~~-~-g~~~~~ 107 (206)
T TIGR03128 73 FAAGADIVTVLGVADDATIKGAVKAAKK-H-GKEVQV 107 (206)
T ss_pred HHcCCCEEEEeccCCHHHHHHHHHHHHH-c-CCEEEE
Confidence 689999996443322 2 455555555 3 678776
No 315
>PF00701 DHDPS: Dihydrodipicolinate synthetase family; InterPro: IPR002220 Dihydropicolinate synthase (DHDPS) is the key enzyme in lysine biosynthesis via the diaminopimelate pathway of prokaryotes, some phycomycetes and higher plants. The enzyme catalyses the condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a ping-pong mechanism in which pyruvate binds to the enzyme by forming a Schiff-base with a lysine residue []. Three other proteins are structurally related to DHDPS and probably also act via a similar catalytic mechanism. These are Escherichia coli N-acetylneuraminate lyase (4.1.3.3 from EC) (gene nanA), which catalyzes the condensation of N-acetyl-D-mannosamine and pyruvate to form N-acetylneuraminate; Rhizobium meliloti (Sinorhizobium meliloti) protein mosA [], which is involved in the biosynthesis of the rhizopine 3-o-methyl-scyllo-inosamine; and E. coli hypothetical protein yjhH. The sequences of DHDPS from different sources are well-conserved. The structure takes the form of a homotetramer, in which 2 monomers are related by an approximate 2-fold symmetry []. Each monomer comprises 2 domains: an 8-fold alpha-/beta-barrel, and a C-terminal alpha-helical domain. The fold resembles that of N-acetylneuraminate lyase. The active site lysine is located in the barrel domain, and has access via 2 channels on the C-terminal side of the barrel.; GO: 0016829 lyase activity, 0008152 metabolic process; PDB: 3B4U_B 3S8H_A 3QZE_B 1XXX_F 3L21_F 3IRD_A 3A5F_B 3G0S_B 3DAQ_C 3UQN_A ....
Probab=32.75 E-value=88 Score=28.95 Aligned_cols=36 Identities=22% Similarity=0.473 Sum_probs=26.4
Q ss_pred hhcCCceeeccCc-ch------HHHHHHHHHhhCCCCCEEeEec
Q psy15126 211 VSQGADFLMVKPA-LP------YLDIISEVKSRHPAYPLFVYQV 247 (300)
Q Consensus 211 a~~GADivmVkPs-mm------~ld~Ir~~~d~~~~vpi~aY~v 247 (300)
.+.|||.+||-|- .. .++..+++.+. ++.||+-|+.
T Consensus 93 ~~~Gad~v~v~~P~~~~~s~~~l~~y~~~ia~~-~~~pi~iYn~ 135 (289)
T PF00701_consen 93 QDAGADAVLVIPPYYFKPSQEELIDYFRAIADA-TDLPIIIYNN 135 (289)
T ss_dssp HHTT-SEEEEEESTSSSCCHHHHHHHHHHHHHH-SSSEEEEEEB
T ss_pred hhcCceEEEEeccccccchhhHHHHHHHHHHhh-cCCCEEEEEC
Confidence 4689999987643 11 47777888866 6899999997
No 316
>TIGR01163 rpe ribulose-phosphate 3-epimerase. This family consists of Ribulose-phosphate 3-epimerase, also known as pentose-5-phosphate 3-epimerase (PPE). PPE converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. It has been found in a wide range of bacteria, archebacteria, fungi and plants.
Probab=32.65 E-value=2.3e+02 Score=24.34 Aligned_cols=35 Identities=26% Similarity=0.405 Sum_probs=21.4
Q ss_pred hhcCCceeec-------cCcc-hHHHHHHHHHhhCCCCC----EEeEe
Q psy15126 211 VSQGADFLMV-------KPAL-PYLDIISEVKSRHPAYP----LFVYQ 246 (300)
Q Consensus 211 a~~GADivmV-------kPsm-m~ld~Ir~~~d~~~~vp----i~aY~ 246 (300)
.+.|||.|=+ -|.. .-++.+|++++. ++.| +|+|.
T Consensus 21 ~~~g~d~i~~~~~Dg~~~~~~~~~~~~v~~i~~~-~~~~v~v~lm~~~ 67 (210)
T TIGR01163 21 EEAGADWIHVDVMDGHFVPNLTFGPPVLEALRKY-TDLPIDVHLMVEN 67 (210)
T ss_pred HHcCCCEEEEcCCCCCCCCCcccCHHHHHHHHhc-CCCcEEEEeeeCC
Confidence 5678887633 2442 357788888865 4566 45554
No 317
>PF01136 Peptidase_U32: Peptidase family U32 This is family U32 in the peptidase classification. ; InterPro: IPR001539 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. The peptidases families associated with clan U- have an unknown catalytic mechanism as the protein fold of the active site domain and the active site residues have not been reported. This is a group of peptidases belonging to MEROPS peptidase family U32 (clan U-). The type example is collagenase (gene prtC) from Porphyromonas gingivalis (Bacteroides gingivalis) [], which is an enzyme that degrades type I collagen and that seems to require a metal cofactor. The product of PrtC is evolutionary related to a number of uncharacterised proteins with a well conserved region containing two cysteines.; GO: 0008233 peptidase activity, 0006508 proteolysis
Probab=32.58 E-value=1.4e+02 Score=26.36 Aligned_cols=59 Identities=20% Similarity=0.312 Sum_probs=43.5
Q ss_pred HHHHHHHhCCCcEEEeeecCCCCCCCCcceeeCCCCceecHHhHHHHHHHHHHHHHcCCCccccCCCCcchHHHHHHHHh
Q psy15126 21 VIPMIRKQFPSLTIACDVCLCGYTSHGHCAIFNEDGSIHYEKTLKRLADISKAFSDAGAHIVAPSDMMDNRIHAIKQSLF 100 (300)
Q Consensus 21 ~i~~ik~~~p~l~i~~Dvclc~yt~hGHcgi~~~~g~i~nd~Tl~~l~~~A~~~A~aGad~vAPSdmMDgrv~air~aLd 100 (300)
+++.+|+.+|++-|++|+.+ .|.|..|++.+ .+.|+.-|.+|.-+ ....|++...
T Consensus 26 ~~~~~k~~~~~~~i~~~~~~----------------nv~N~~s~~~~-------~~~G~~~i~ls~EL--~~~ei~~i~~ 80 (233)
T PF01136_consen 26 LLELLKELGPDLKIIADYSL----------------NVFNSESARFL-------KELGASRITLSPEL--SLEEIKEIAE 80 (233)
T ss_pred HHHHHHHhCCCCcEEEecCc----------------cCCCHHHHHHH-------HHcCCCEEEECccC--CHHHHHHHHH
Confidence 67888999999999998765 36777777665 45699988887766 5666666665
Q ss_pred hC-CC
Q psy15126 101 TS-RQ 104 (300)
Q Consensus 101 ~~-g~ 104 (300)
.. +.
T Consensus 81 ~~~~~ 85 (233)
T PF01136_consen 81 NSPGV 85 (233)
T ss_pred hCCCC
Confidence 55 44
No 318
>PLN02746 hydroxymethylglutaryl-CoA lyase
Probab=32.56 E-value=2.2e+02 Score=28.25 Aligned_cols=70 Identities=17% Similarity=0.180 Sum_probs=0.0
Q ss_pred hHHHHHHHHHhhhcccccCCCCCccccchhhhcCCceeeccCc--ch----HHHHHHHHHhhCCCCCEEeEecccccHHH
Q psy15126 181 TLKRLADISKAFSDAVYVPNHNTDRFQARDVSQGADFLMVKPA--LP----YLDIISEVKSRHPAYPLFVYQVSGEYAML 254 (300)
Q Consensus 181 tl~~l~~~a~~~a~~~~~~~~n~~~~~~~Da~~GADivmVkPs--mm----~ld~Ir~~~d~~~~vpi~aY~vSgeY~~~ 254 (300)
+.+.|.+.+... .++|||.|.++=. ++ .-+.++.++++++..||-.+.=
T Consensus 195 ~~~~l~~~~~~~------------------~~~Gad~I~l~DT~G~a~P~~v~~lv~~l~~~~~~~~i~~H~H------- 249 (347)
T PLN02746 195 PPSKVAYVAKEL------------------YDMGCYEISLGDTIGVGTPGTVVPMLEAVMAVVPVDKLAVHFH------- 249 (347)
T ss_pred CHHHHHHHHHHH------------------HHcCCCEEEecCCcCCcCHHHHHHHHHHHHHhCCCCeEEEEEC-------
Q ss_pred HHHHhCCCCCHHHHHHHHHHHHHHcCCCEE
Q psy15126 255 AFAAQAGALDLKRALMETLTCLRRGGADVI 284 (300)
Q Consensus 255 r~Aa~~~~~n~~eal~E~~~~~~r~GAD~I 284 (300)
=|.--|+--++..+ ++||+.+
T Consensus 250 --------nd~GlA~AN~lAA~-~aGa~~v 270 (347)
T PLN02746 250 --------DTYGQALANILVSL-QMGISTV 270 (347)
T ss_pred --------CCCChHHHHHHHHH-HhCCCEE
No 319
>PF01964 ThiC: ThiC family; InterPro: IPR002817 ThiC is found within the thiamin biosynthesis operon. ThiC is involved in thiamin biosynthesis []. The precise catalytic function of ThiC is still not known. ThiC participates in the formation of 4-Amino-5-hydroxymethyl-2-methylpyrimidine from AIR, an intermediate in the de novo pyrimidine biosynthesis.; GO: 0009228 thiamine biosynthetic process; PDB: 3EPO_A 3EPN_B 3EPM_B.
Probab=32.55 E-value=3.3e+02 Score=28.30 Aligned_cols=79 Identities=19% Similarity=0.095 Sum_probs=42.3
Q ss_pred hhcCCceeeccCcchHHHHHHHHHhhCCCCCEEeEecccccHHHHHHH-hC----CCCCHHHHHHHHHHHHHHcCCCEEE
Q psy15126 211 VSQGADFLMVKPALPYLDIISEVKSRHPAYPLFVYQVSGEYAMLAFAA-QA----GALDLKRALMETLTCLRRGGADVII 285 (300)
Q Consensus 211 a~~GADivmVkPsmm~ld~Ir~~~d~~~~vpi~aY~vSgeY~~~r~Aa-~~----~~~n~~eal~E~~~~~~r~GAD~Ii 285 (300)
.+.|||-||==-.---++.||+..=+...+||-.- |+-.|+ +. --++.++.+....+.. +.|.|++-
T Consensus 86 ~~~GADtvMDLStggdl~~iR~~il~~~~vpvGTV-------PiYqa~~~~~~~~~~~t~d~~~~~ie~qa-~~GVDfmt 157 (420)
T PF01964_consen 86 EKAGADTVMDLSTGGDLDEIRRAILENSPVPVGTV-------PIYQAAIRKGGSIVDMTEDDFFDVIEKQA-KDGVDFMT 157 (420)
T ss_dssp HHTT-SEEEE---STTHHHHHHHHHHT-SS-EEE--------HHHHHHHHTTT-GGG--HHHHHHHHHHHH-HHT--EEE
T ss_pred HHhCCCEEEEcCCCCCHHHHHHHHHHhCCCccccc-------hHHHHHHHhCCChhhCCHHHHHHHHHHHH-HcCCCEEE
Confidence 68999999532222368889887655456887753 333333 22 1345666666666677 69999998
Q ss_pred ecch--HHHHHHHh
Q psy15126 286 SYYT--PRVLEWLR 297 (300)
Q Consensus 286 ~y~A--~~~ld~l~ 297 (300)
++.+ ++.++.++
T Consensus 158 iH~git~~~~~~~~ 171 (420)
T PF01964_consen 158 IHCGITRETLERLK 171 (420)
T ss_dssp E-TT--GGGGGGGT
T ss_pred EccchhHHHHHHHh
Confidence 8875 33444443
No 320
>PRK06739 pyruvate kinase; Validated
Probab=32.54 E-value=5.2e+02 Score=25.86 Aligned_cols=129 Identities=16% Similarity=0.202 Sum_probs=83.9
Q ss_pred HHHcCCCccccCCC-CcchHHHHHHHHhhCCCCCCcccccchhhhhcccchhhhhhhcCCCCCCCcceeeCCCCCCceEE
Q psy15126 74 FSDAGAHIVAPSDM-MDNRIHAIKQSLFTSRQSSTTGLLSYSAKFCSAFYGPFREAAGSAPTFGDRSCYQLPCGSKGLAI 152 (300)
Q Consensus 74 ~A~aGad~vAPSdm-MDgrv~air~aLd~~g~~~~v~ImsysaK~aS~~YGPfRda~gS~~~~gdr~~yQ~~~~~~~~ai 152 (300)
.++.|+|.||.|-- -..-|..+|+.|.+.|. .++.|+
T Consensus 174 ~~~~~vD~ia~SFVr~~~Dv~~~r~~l~~~g~-~~~~Ii----------------------------------------- 211 (352)
T PRK06739 174 LLEEDVDFIACSFVRKPSHIKEIRDFIQQYKE-TSPNLI----------------------------------------- 211 (352)
T ss_pred HHHcCCCEEEECCCCCHHHHHHHHHHHHHcCC-CCCcEE-----------------------------------------
Confidence 45679999998743 34557888888888776 444443
Q ss_pred EEeecccCCCCCCccccccCCCcccchHhHHHHHHHHHhhhcccccCCCCCccccchhhhcCCceeeccCcch-------
Q psy15126 153 RAAVCLCGYTSHGHCAIFNEDGSIHYEKTLKRLADISKAFSDAVYVPNHNTDRFQARDVSQGADFLMVKPALP------- 225 (300)
Q Consensus 153 ~~dvclc~yt~hGHcgi~~~~g~i~nd~tl~~l~~~a~~~a~~~~~~~~n~~~~~~~Da~~GADivmVkPsmm------- 225 (300)
+ +|++-+-++.|-+|... +|-|||+=+..
T Consensus 212 -a--------------------KIE~~~av~nl~eI~~~-----------------------sDgimVARGDLgve~~~e 247 (352)
T PRK06739 212 -A--------------------KIETMEAIENFQDICKE-----------------------ADGIMIARGDLGVELPYQ 247 (352)
T ss_pred -E--------------------EECCHHHHHHHHHHHHh-----------------------cCEEEEECcccccccCHH
Confidence 2 57788888888777333 58999987632
Q ss_pred -----HHHHHHHHHhhCCCCCEE-eEecccccHHHHHHHhCCCCCHHHHHHHHHHHHHHcCCCEEEec-------chHHH
Q psy15126 226 -----YLDIISEVKSRHPAYPLF-VYQVSGEYAMLAFAAQAGALDLKRALMETLTCLRRGGADVIISY-------YTPRV 292 (300)
Q Consensus 226 -----~ld~Ir~~~d~~~~vpi~-aY~vSgeY~~~r~Aa~~~~~n~~eal~E~~~~~~r~GAD~Ii~y-------~A~~~ 292 (300)
+=.+|+..+.. +.|++ |=|+ .-+| ..++...|.=+-.+...+ ..|||.||.. |-.+.
T Consensus 248 ~vp~~Qk~Ii~~c~~~--gkPvIvATqm--LeSM-----~~~p~PTRAEvsDVanaV-~dG~D~vMLS~ETA~G~yPvea 317 (352)
T PRK06739 248 FIPLLQKMMIQECNRT--NTYVITATQM--LQSM-----VDHSIPTRAEVTDVFQAV-LDGTNAVMLSAESASGEHPIES 317 (352)
T ss_pred HHHHHHHHHHHHHHHh--CCCEEEEcch--HHhh-----ccCCCCChHHHHHHHHHH-HhCCcEEEEcccccCCCCHHHH
Confidence 33456666554 56766 5554 2222 335666666667777778 5999999975 44455
Q ss_pred HHHHhh
Q psy15126 293 LEWLRE 298 (300)
Q Consensus 293 ld~l~~ 298 (300)
.+|+++
T Consensus 318 V~~m~~ 323 (352)
T PRK06739 318 VSTLRL 323 (352)
T ss_pred HHHHHH
Confidence 566553
No 321
>KOG1606|consensus
Probab=32.11 E-value=87 Score=30.34 Aligned_cols=76 Identities=26% Similarity=0.254 Sum_probs=49.2
Q ss_pred hhcCCceeecc---Ccch----------HHHHHHHHHhhCCCCCEEeEeccccc--HHHHHHHhCCCCCHHHH-------
Q psy15126 211 VSQGADFLMVK---PALP----------YLDIISEVKSRHPAYPLFVYQVSGEY--AMLAFAAQAGALDLKRA------- 268 (300)
Q Consensus 211 a~~GADivmVk---Psmm----------~ld~Ir~~~d~~~~vpi~aY~vSgeY--~~~r~Aa~~~~~n~~ea------- 268 (300)
-++||=.||+- |+.+ -=..|+++++.- .+|+|+-.--|-| +-+-.+.+-+++|+.|.
T Consensus 38 E~aGACaVmalervPadiR~~GgV~RMsDP~mIKei~~aV-siPVMAk~RiGHFVEAQIlE~l~vDYiDESEvlt~AD~~ 116 (296)
T KOG1606|consen 38 EEAGACAVMALERVPADIRAQGGVARMSDPRMIKEIKNAV-SIPVMAKVRIGHFVEAQILEALGVDYIDESEVLTPADWD 116 (296)
T ss_pred HhcCcceEeeeccCCHhHHhcCCeeecCCHHHHHHHHHhc-cchhhhhhhhhhhhHHHHHHHhccCccchhhhccccccc
Confidence 46899888765 5433 245788888875 6999987433333 22333333344444433
Q ss_pred ------------------HHHHHHHHHHcCCCEEEecc
Q psy15126 269 ------------------LMETLTCLRRGGADVIISYY 288 (300)
Q Consensus 269 ------------------l~E~~~~~~r~GAD~Ii~y~ 288 (300)
+=|+|+.| ||||-||=||-
T Consensus 117 hhI~KhnFkvPFvCG~rdlGEALRRI-~EGAAMIRtkG 153 (296)
T KOG1606|consen 117 HHIEKHNFKVPFVCGCRDLGEALRRI-REGAAMIRTKG 153 (296)
T ss_pred chhhhhcCcCceeeccccHHHHHHHH-hhchhhheecc
Confidence 35788899 79999999886
No 322
>TIGR01334 modD putative molybdenum utilization protein ModD. The gene modD for a member of this family is found with molybdenum transport genes modABC in Rhodobacter capsulatus. However, disruption of modD causes only a 4-fold (rather than 500-fold for modA, modB, modC) change in the external molybdenum concentration required to suppress an alternative nitrogenase. ModD proteins are highly similar to nicotinate-nucleotide pyrophosphorylase (also called quinolinate phosphoribosyltransferase). The function unknown.
Probab=31.90 E-value=1.1e+02 Score=29.50 Aligned_cols=58 Identities=12% Similarity=0.155 Sum_probs=46.3
Q ss_pred hHHHHHHHHHHhCCCcEEEeeecCCCCCCCCcceeeCCCCceecHHhHHHHHHHHHHHHHcCCCccccCCCCcchHHHHH
Q psy15126 17 PLFQVIPMIRKQFPSLTIACDVCLCGYTSHGHCAIFNEDGSIHYEKTLKRLADISKAFSDAGAHIVAPSDMMDNRIHAIK 96 (300)
Q Consensus 17 ~~~~~i~~ik~~~p~l~i~~Dvclc~yt~hGHcgi~~~~g~i~nd~Tl~~l~~~A~~~A~aGad~vAPSdmMDgrv~air 96 (300)
-+.++++.+|+.+|+..|..+|- -.++|+..+++|+|+|-.--|-...+...-
T Consensus 174 ~i~~av~~~r~~~~~~kIeVEv~---------------------------tleea~ea~~~GaDiI~lDn~~~e~l~~~v 226 (277)
T TIGR01334 174 DWGGAIGRLKQTAPERKITVEAD---------------------------TIEQALTVLQASPDILQLDKFTPQQLHHLH 226 (277)
T ss_pred cHHHHHHHHHHhCCCCCEEEECC---------------------------CHHHHHHHHHcCcCEEEECCCCHHHHHHHH
Confidence 58889999999999877776661 246788889999999988877777777777
Q ss_pred HHHhh
Q psy15126 97 QSLFT 101 (300)
Q Consensus 97 ~aLd~ 101 (300)
+.+..
T Consensus 227 ~~l~~ 231 (277)
T TIGR01334 227 ERLKF 231 (277)
T ss_pred HHHhc
Confidence 77753
No 323
>cd07937 DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcarboxylase 5S, carboxyltransferase domain. This family includes the carboxyltransferase domains of pyruvate carboxylase (PC) and the transcarboxylase (TC) 5S subunit. Transcarboxylase 5S is a cobalt-dependent metalloenzyme subunit of the biotin-dependent transcarboxylase multienzyme complex. Transcarboxylase 5S transfers carbon dioxide from the 1.3S biotin to pyruvate in the second of two carboxylation reactions catalyzed by TC. The first reaction involves the transfer of carbon dioxide from methylmalonyl-CoA to the 1.3S biotin, and is catalyzed by the 12S subunit. These two steps allow a carboxylate group to be transferred from oxaloacetate to propionyl-CoA to yield pyruvate and methylmalonyl-CoA. The catalytic domain of transcarboxylase 5S has a canonical TIM-barrel fold with a large C-terminal extension that forms a funnel leading to the active site. Transcarboxylase 5S forms a homodimer and there are six dimers per complex
Probab=31.89 E-value=2.4e+02 Score=26.43 Aligned_cols=69 Identities=20% Similarity=0.308 Sum_probs=0.0
Q ss_pred hHHHHHHHHHhhhcccccCCCCCccccchhhhcCCceeeccCc--ch----HHHHHHHHHhhCCCCCEEeEecccccHHH
Q psy15126 181 TLKRLADISKAFSDAVYVPNHNTDRFQARDVSQGADFLMVKPA--LP----YLDIISEVKSRHPAYPLFVYQVSGEYAML 254 (300)
Q Consensus 181 tl~~l~~~a~~~a~~~~~~~~n~~~~~~~Da~~GADivmVkPs--mm----~ld~Ir~~~d~~~~vpi~aY~vSgeY~~~ 254 (300)
+.+.+.+.+... .+.|||.|.++=+ .+ .-+.++.++++++ +||-.+.=
T Consensus 147 ~~~~~~~~~~~~------------------~~~Ga~~i~l~DT~G~~~P~~v~~lv~~l~~~~~-~~l~~H~H------- 200 (275)
T cd07937 147 TLEYYVKLAKEL------------------EDMGADSICIKDMAGLLTPYAAYELVKALKKEVG-LPIHLHTH------- 200 (275)
T ss_pred CHHHHHHHHHHH------------------HHcCCCEEEEcCCCCCCCHHHHHHHHHHHHHhCC-CeEEEEec-------
Q ss_pred HHHHhCCCCCHHHHHHHHHHHHHHcCCCEE
Q psy15126 255 AFAAQAGALDLKRALMETLTCLRRGGADVI 284 (300)
Q Consensus 255 r~Aa~~~~~n~~eal~E~~~~~~r~GAD~I 284 (300)
=|.--|+--++..+ ++||+.|
T Consensus 201 --------nd~GlA~aN~laA~-~aGa~~v 221 (275)
T cd07937 201 --------DTSGLAVATYLAAA-EAGVDIV 221 (275)
T ss_pred --------CCCChHHHHHHHHH-HhCCCEE
No 324
>PRK06096 molybdenum transport protein ModD; Provisional
Probab=31.63 E-value=1.1e+02 Score=29.61 Aligned_cols=57 Identities=16% Similarity=0.110 Sum_probs=43.8
Q ss_pred hHHHHHHHHHHhCCCcEEEeeecCCCCCCCCcceeeCCCCceecHHhHHHHHHHHHHHHHcCCCccccCCCCcchHHHHH
Q psy15126 17 PLFQVIPMIRKQFPSLTIACDVCLCGYTSHGHCAIFNEDGSIHYEKTLKRLADISKAFSDAGAHIVAPSDMMDNRIHAIK 96 (300)
Q Consensus 17 ~~~~~i~~ik~~~p~l~i~~Dvclc~yt~hGHcgi~~~~g~i~nd~Tl~~l~~~A~~~A~aGad~vAPSdmMDgrv~air 96 (300)
-+.++++.+|+..|+..|..+|- | .++++.++++|+|+|-.--|-.-.+..+.
T Consensus 175 ~i~~av~~~r~~~~~~kIeVEv~-----------------------t----leqa~ea~~agaDiI~LDn~~~e~l~~av 227 (284)
T PRK06096 175 DWSGAINQLRRHAPEKKIVVEAD-----------------------T----PKEAIAALRAQPDVLQLDKFSPQQATEIA 227 (284)
T ss_pred cHHHHHHHHHHhCCCCCEEEECC-----------------------C----HHHHHHHHHcCCCEEEECCCCHHHHHHHH
Confidence 47889999999999876766651 3 46777888999999988777777777776
Q ss_pred HHHh
Q psy15126 97 QSLF 100 (300)
Q Consensus 97 ~aLd 100 (300)
+.+.
T Consensus 228 ~~~~ 231 (284)
T PRK06096 228 QIAP 231 (284)
T ss_pred HHhh
Confidence 6654
No 325
>TIGR03217 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase. Members of this protein family are 4-hydroxy-2-oxovalerate aldolase, also called 4-hydroxy-2-ketovalerate aldolase and 2-oxo-4-hydroxypentanoate aldolase. This enzyme, part of the pathway for the meta-cleavage of catechol, produces pyruvate and acetaldehyde. Acetaldehyde is then converted by acetaldehyde dehydrogenase (acylating) (DmpF; EC 1.2.1.10) to acetyl-CoA. The two enzymes are tightly associated.
Probab=31.48 E-value=2.4e+02 Score=27.56 Aligned_cols=28 Identities=21% Similarity=0.395 Sum_probs=23.3
Q ss_pred ceecHHhHHHHHHHHHHHHHcCCCcccc
Q psy15126 57 SIHYEKTLKRLADISKAFSDAGAHIVAP 84 (300)
Q Consensus 57 ~i~nd~Tl~~l~~~A~~~A~aGad~vAP 84 (300)
.+....|.+...+++..+.++|++.|--
T Consensus 16 ~~~~~f~~~~~~~ia~~Ld~aGV~~IEv 43 (333)
T TIGR03217 16 AIRHQFTIEQVRAIAAALDEAGVDAIEV 43 (333)
T ss_pred CCCCcCCHHHHHHHHHHHHHcCCCEEEE
Confidence 3556789999999999999999998854
No 326
>cd00956 Transaldolase_FSA Transaldolase-like fructose-6-phosphate aldolases (FSA) found in bacteria and archaea, which are member of the MipB/TalC subfamily of class I aldolases. FSA catalyze an aldol cleavage of fructose 6-phosphate and do not utilize fructose, fructose 1-phosphate, fructose 1,6-phosphate, or dihydroxyacetone phosphate. The enzymes belong to the transaldolase family that serves in transfer reactions in the pentose phosphate cycle, and are more distantly related to fructose 1,6-bisphosphate aldolase.
Probab=31.41 E-value=65 Score=29.31 Aligned_cols=86 Identities=20% Similarity=0.143 Sum_probs=45.4
Q ss_pred CCCCChHHHHHHHHHHhCCCcEEEeeecCCCCCCCCccee--eCCCCceecHHhHHHHHHHHHHHHHcCCCccccCC-CC
Q psy15126 12 DTPDNPLFQVIPMIRKQFPSLTIACDVCLCGYTSHGHCAI--FNEDGSIHYEKTLKRLADISKAFSDAGAHIVAPSD-MM 88 (300)
Q Consensus 12 ~~~~~~~~~~i~~ik~~~p~l~i~~Dvclc~yt~hGHcgi--~~~~g~i~nd~Tl~~l~~~A~~~A~aGad~vAPSd-mM 88 (300)
.+.+..+.++.+ |.+.+|+++| =-|.|..|--.+ +.+.| |.--.|.=-=.+||...+++||+.|+|.- -|
T Consensus 61 ~~~e~~i~~a~~-l~~~~~~~~i-----KIP~T~~gl~ai~~L~~~g-i~v~~T~V~s~~Qa~~Aa~AGA~yvsP~vgR~ 133 (211)
T cd00956 61 TDAEGMVAEARK-LASLGGNVVV-----KIPVTEDGLKAIKKLSEEG-IKTNVTAIFSAAQALLAAKAGATYVSPFVGRI 133 (211)
T ss_pred CCHHHHHHHHHH-HHHhCCCEEE-----EEcCcHhHHHHHHHHHHcC-CceeeEEecCHHHHHHHHHcCCCEEEEecChH
Confidence 344455554433 4455565433 125555443322 11222 22222222335699999999999999921 11
Q ss_pred -----c--chHHHHHHHHhhCCC
Q psy15126 89 -----D--NRIHAIKQSLFTSRQ 104 (300)
Q Consensus 89 -----D--grv~air~aLd~~g~ 104 (300)
| ..+..+.+.+...|+
T Consensus 134 ~~~g~dg~~~i~~i~~~~~~~~~ 156 (211)
T cd00956 134 DDLGGDGMELIREIRTIFDNYGF 156 (211)
T ss_pred hhcCCCHHHHHHHHHHHHHHcCC
Confidence 1 235577777777776
No 327
>PRK05848 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=31.37 E-value=55 Score=31.33 Aligned_cols=59 Identities=20% Similarity=0.299 Sum_probs=37.6
Q ss_pred hcCC-ceeeccCcc--h---HHHHHHHHHhhCCC-CCEEeEecccccHHHHHHHhCCCCCHHHHHHHHHHHHHHcCCCEE
Q psy15126 212 SQGA-DFLMVKPAL--P---YLDIISEVKSRHPA-YPLFVYQVSGEYAMLAFAAQAGALDLKRALMETLTCLRRGGADVI 284 (300)
Q Consensus 212 ~~GA-DivmVkPsm--m---~ld~Ir~~~d~~~~-vpi~aY~vSgeY~~~r~Aa~~~~~n~~eal~E~~~~~~r~GAD~I 284 (300)
.-|. |+||+|+.- + --..|+++|.++|+ .+|++--- +. -|.+..+ ++|||+|
T Consensus 148 R~gL~d~vlikdnHi~~~g~i~~~v~~~k~~~p~~~~I~VEv~----------------tl----eea~~A~-~~GaDiI 206 (273)
T PRK05848 148 RLGLDDCLMLKDTHLKHIKDLKEFIQHARKNIPFTAKIEIECE----------------SL----EEAKNAM-NAGADIV 206 (273)
T ss_pred cCCchhhhCcCHHHHHHHCcHHHHHHHHHHhCCCCceEEEEeC----------------CH----HHHHHHH-HcCCCEE
Confidence 4455 689999982 2 35678888888874 88888621 33 3334445 5889988
Q ss_pred Ee-cchHH
Q psy15126 285 IS-YYTPR 291 (300)
Q Consensus 285 i~-y~A~~ 291 (300)
|. ++.++
T Consensus 207 ~LDn~~~e 214 (273)
T PRK05848 207 MCDNMSVE 214 (273)
T ss_pred EECCCCHH
Confidence 75 34443
No 328
>PRK03170 dihydrodipicolinate synthase; Provisional
Probab=31.32 E-value=1.3e+02 Score=27.85 Aligned_cols=36 Identities=19% Similarity=0.334 Sum_probs=26.0
Q ss_pred hhcCCceeeccCc-ch------HHHHHHHHHhhCCCCCEEeEec
Q psy15126 211 VSQGADFLMVKPA-LP------YLDIISEVKSRHPAYPLFVYQV 247 (300)
Q Consensus 211 a~~GADivmVkPs-mm------~ld~Ir~~~d~~~~vpi~aY~v 247 (300)
.+.|||.||+-|- .. .++..+++.+.. ++||+-|+.
T Consensus 93 ~~~G~d~v~~~pP~~~~~~~~~i~~~~~~ia~~~-~~pv~lYn~ 135 (292)
T PRK03170 93 EKAGADGALVVTPYYNKPTQEGLYQHFKAIAEAT-DLPIILYNV 135 (292)
T ss_pred HHcCCCEEEECCCcCCCCCHHHHHHHHHHHHhcC-CCCEEEEEC
Confidence 4689999998654 21 355666666665 799999986
No 329
>PF06506 PrpR_N: Propionate catabolism activator; InterPro: IPR010524 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. This entry represents a domain found at the N terminus of several sigma54- dependent transcriptional activators including PrpR, which activates catabolism of propionate. In Salmonella enterica subsp. enterica serovar Typhimurium, PrpR acts as a sensor of 2-methylcitrate (2-MC), an intermediate of the 2-methylcitric acid cycle used by this bacterium to convert propionate to pyruvate []. ; GO: 0000156 two-component response regulator activity, 0003677 DNA binding, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay); PDB: 2Q5C_A 2PJU_A.
Probab=31.23 E-value=59 Score=28.17 Aligned_cols=69 Identities=12% Similarity=0.058 Sum_probs=37.5
Q ss_pred eeccCcch-HHHHHHHHHhhCCCCCEEeEec-ccccHHHHHHHhC-----CCCCHHHHHHHHHHHHHHcCCCEEEec
Q psy15126 218 LMVKPALP-YLDIISEVKSRHPAYPLFVYQV-SGEYAMLAFAAQA-----GALDLKRALMETLTCLRRGGADVIISY 287 (300)
Q Consensus 218 vmVkPsmm-~ld~Ir~~~d~~~~vpi~aY~v-SgeY~~~r~Aa~~-----~~~n~~eal~E~~~~~~r~GAD~Ii~y 287 (300)
|-+.+|-. .+.++.+++...+++-++.|.- ...+.-+...... -+-+. +=+.+.+..+++.|.|+|+--
T Consensus 57 V~I~~s~~Dil~al~~a~~~~~~Iavv~~~~~~~~~~~~~~ll~~~i~~~~~~~~-~e~~~~i~~~~~~G~~viVGg 132 (176)
T PF06506_consen 57 VEIPISGFDILRALAKAKKYGPKIAVVGYPNIIPGLESIEELLGVDIKIYPYDSE-EEIEAAIKQAKAEGVDVIVGG 132 (176)
T ss_dssp EEE---HHHHHHHHHHCCCCTSEEEEEEESS-SCCHHHHHHHHT-EEEEEEESSH-HHHHHHHHHHHHTT--EEEES
T ss_pred EEECCCHhHHHHHHHHHHhcCCcEEEEecccccHHHHHHHHHhCCceEEEEECCH-HHHHHHHHHHHHcCCcEEECC
Confidence 33445422 5666666665456777888864 2223344443332 23344 456888888889999999864
No 330
>PRK00865 glutamate racemase; Provisional
Probab=31.20 E-value=1.3e+02 Score=27.79 Aligned_cols=52 Identities=19% Similarity=0.289 Sum_probs=40.5
Q ss_pred HHHHHHHhCCC--cEEEeeecCCCCCCCCcceeeCCCCceecHHhHHHHHHHHHHHHHcCCCcccc
Q psy15126 21 VIPMIRKQFPS--LTIACDVCLCGYTSHGHCAIFNEDGSIHYEKTLKRLADISKAFSDAGAHIVAP 84 (300)
Q Consensus 21 ~i~~ik~~~p~--l~i~~Dvclc~yt~hGHcgi~~~~g~i~nd~Tl~~l~~~A~~~A~aGad~vAP 84 (300)
.++.|++.+|+ ++-.+|-.-.||.. -..+.=.+++.+.+..+.+.|+|.|..
T Consensus 20 vl~~i~~~lp~~~~iY~~D~~~~PYG~------------ks~~~i~~~~~~~~~~L~~~g~d~iVI 73 (261)
T PRK00865 20 VLREIRRLLPDEHIIYVGDTARFPYGE------------KSEEEIRERTLEIVEFLLEYGVKMLVI 73 (261)
T ss_pred HHHHHHHHCCCCCEEEEecCCCCCCCC------------CCHHHHHHHHHHHHHHHHhCCCCEEEE
Confidence 67899999996 77889999999943 244445566667777888899998876
No 331
>TIGR00874 talAB transaldolase. This family includes the majority of known and predicted transaldolase sequences, including E. coli TalA and TalB. It excluded two other families. The first includes E. coli transaldolase-like protein TalC. The second family includes the putative transaldolases of Helicobacter pylori and Mycobacterium tuberculosis.
Probab=31.19 E-value=55 Score=32.17 Aligned_cols=23 Identities=22% Similarity=0.147 Sum_probs=18.5
Q ss_pred HhHHHHHHHHHHHHHcCCCcccc
Q psy15126 62 KTLKRLADISKAFSDAGAHIVAP 84 (300)
Q Consensus 62 ~Tl~~l~~~A~~~A~aGad~vAP 84 (300)
.|+=-=..||+..|+||+..|+|
T Consensus 153 ~TliFS~~Qa~aaa~AGa~~ISP 175 (317)
T TIGR00874 153 LTLLFSFVQAIACAEAKVTLISP 175 (317)
T ss_pred eeeecCHHHHHHHHHcCCCEEEe
Confidence 34444457999999999999999
No 332
>PLN02274 inosine-5'-monophosphate dehydrogenase
Probab=31.18 E-value=2.1e+02 Score=29.71 Aligned_cols=58 Identities=17% Similarity=0.224 Sum_probs=36.0
Q ss_pred hhcCCceeecc--Cc------------ch---HHHHHHHHHhhCCCCCEEeEecccccHHHHHHHhCCCCCHHHHHHHHH
Q psy15126 211 VSQGADFLMVK--PA------------LP---YLDIISEVKSRHPAYPLFVYQVSGEYAMLAFAAQAGALDLKRALMETL 273 (300)
Q Consensus 211 a~~GADivmVk--Ps------------mm---~ld~Ir~~~d~~~~vpi~aY~vSgeY~~~r~Aa~~~~~n~~eal~E~~ 273 (300)
+++|||+|.|. |+ .+ -+..++++.+.+ ++||++= =|..+. .++.
T Consensus 307 ~~aGaD~i~vg~g~G~~~~t~~~~~~g~~~~~~i~~~~~~~~~~-~vpVIad--------------GGI~~~----~di~ 367 (505)
T PLN02274 307 IQAGVDGLRVGMGSGSICTTQEVCAVGRGQATAVYKVASIAAQH-GVPVIAD--------------GGISNS----GHIV 367 (505)
T ss_pred HHcCcCEEEECCCCCccccCccccccCCCcccHHHHHHHHHHhc-CCeEEEe--------------CCCCCH----HHHH
Confidence 57999999774 32 11 244466666665 6888764 234444 3344
Q ss_pred HHHHHcCCCEEEecc
Q psy15126 274 TCLRRGGADVIISYY 288 (300)
Q Consensus 274 ~~~~r~GAD~Ii~y~ 288 (300)
+.+ ..|||.+|+--
T Consensus 368 kAl-a~GA~~V~vGs 381 (505)
T PLN02274 368 KAL-TLGASTVMMGS 381 (505)
T ss_pred HHH-HcCCCEEEEch
Confidence 566 68999998743
No 333
>PRK07455 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=31.15 E-value=66 Score=28.57 Aligned_cols=70 Identities=21% Similarity=0.214 Sum_probs=46.1
Q ss_pred ccCCCCCccccchhhhcCCceeeccCcch--HHHHHHHHHhhCCCCCEEeEecccccHHHHHHHhCCCCCHHHHHHHHHH
Q psy15126 197 YVPNHNTDRFQARDVSQGADFLMVKPALP--YLDIISEVKSRHPAYPLFVYQVSGEYAMLAFAAQAGALDLKRALMETLT 274 (300)
Q Consensus 197 ~~~~~n~~~~~~~Da~~GADivmVkPsmm--~ld~Ir~~~d~~~~vpi~aY~vSgeY~~~r~Aa~~~~~n~~eal~E~~~ 274 (300)
++|--+|..=...-.++|||.|=+=|+-. =++.+++++..+|++|+++= |=++. |-+.
T Consensus 108 ~i~G~~t~~e~~~A~~~Gadyv~~Fpt~~~~G~~~l~~~~~~~~~ipvvai---------------GGI~~-----~n~~ 167 (187)
T PRK07455 108 IIPGALTPTEIVTAWQAGASCVKVFPVQAVGGADYIKSLQGPLGHIPLIPT---------------GGVTL-----ENAQ 167 (187)
T ss_pred EEcCcCCHHHHHHHHHCCCCEEEECcCCcccCHHHHHHHHhhCCCCcEEEe---------------CCCCH-----HHHH
Confidence 34444443333444679999998888733 37888998888888999986 22454 3334
Q ss_pred HHHHcCCCEEEe
Q psy15126 275 CLRRGGADVIIS 286 (300)
Q Consensus 275 ~~~r~GAD~Ii~ 286 (300)
++.++||+.+-+
T Consensus 168 ~~l~aGa~~vav 179 (187)
T PRK07455 168 AFIQAGAIAVGL 179 (187)
T ss_pred HHHHCCCeEEEE
Confidence 555789887643
No 334
>PRK12346 transaldolase A; Provisional
Probab=30.91 E-value=51 Score=32.40 Aligned_cols=23 Identities=26% Similarity=0.368 Sum_probs=18.3
Q ss_pred HhHHHHHHHHHHHHHcCCCcccc
Q psy15126 62 KTLKRLADISKAFSDAGAHIVAP 84 (300)
Q Consensus 62 ~Tl~~l~~~A~~~A~aGad~vAP 84 (300)
.|+--=..|++..|+||+..|+|
T Consensus 154 ~TliFS~~Qa~~aa~AGa~~ISP 176 (316)
T PRK12346 154 LTLLFSFAQARACAEAGVFLISP 176 (316)
T ss_pred EEEecCHHHHHHHHHcCCCEEEe
Confidence 33333457999999999999999
No 335
>PLN02489 homocysteine S-methyltransferase
Probab=30.84 E-value=44 Score=32.47 Aligned_cols=24 Identities=21% Similarity=0.216 Sum_probs=20.7
Q ss_pred CHHHHHHHHHHHHHHcCCCEEEec
Q psy15126 264 DLKRALMETLTCLRRGGADVIISY 287 (300)
Q Consensus 264 n~~eal~E~~~~~~r~GAD~Ii~y 287 (300)
+..|.|+++.+++.++|||+|.|-
T Consensus 52 ~~Pe~V~~vH~~yl~AGAdvI~Tn 75 (335)
T PLN02489 52 TSPHLIRKVHLDYLEAGADIIITA 75 (335)
T ss_pred CCHHHHHHHHHHHHHhCCCEEEec
Confidence 455899999999999999988763
No 336
>cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain. This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t
Probab=30.74 E-value=3.2e+02 Score=25.60 Aligned_cols=26 Identities=19% Similarity=0.225 Sum_probs=21.9
Q ss_pred ecHHhHHHHHHHHHHHHHcCCCcccc
Q psy15126 59 HYEKTLKRLADISKAFSDAGAHIVAP 84 (300)
Q Consensus 59 ~nd~Tl~~l~~~A~~~A~aGad~vAP 84 (300)
.-..|.+...+++..+.++|+|+|--
T Consensus 14 ~~~f~~~~~~~ia~~L~~~GVd~IEv 39 (266)
T cd07944 14 NWDFGDEFVKAIYRALAAAGIDYVEI 39 (266)
T ss_pred CccCCHHHHHHHHHHHHHCCCCEEEe
Confidence 44688899999999999999999844
No 337
>PRK13558 bacterio-opsin activator; Provisional
Probab=30.73 E-value=1.4e+02 Score=30.41 Aligned_cols=50 Identities=18% Similarity=0.236 Sum_probs=34.8
Q ss_pred hcCCceeeccCcch---HHHHHHHHHhhCCCCCEEeEecccccHHHHHHHhCC
Q psy15126 212 SQGADFLMVKPALP---YLDIISEVKSRHPAYPLFVYQVSGEYAMLAFAAQAG 261 (300)
Q Consensus 212 ~~GADivmVkPsmm---~ld~Ir~~~d~~~~vpi~aY~vSgeY~~~r~Aa~~~ 261 (300)
+...|+|++-..|+ -++.+++++...+++||..++..........+.+.|
T Consensus 49 ~~~~Dlvl~d~~lp~~~g~~~l~~l~~~~~~~piI~lt~~~~~~~~~~al~~G 101 (665)
T PRK13558 49 AGEIDCVVADHEPDGFDGLALLEAVRQTTAVPPVVVVPTAGDEAVARRAVDAD 101 (665)
T ss_pred ccCCCEEEEeccCCCCcHHHHHHHHHhcCCCCCEEEEECCCCHHHHHHHHhcC
Confidence 45679988876654 578888888777899999997644444444444443
No 338
>PRK00507 deoxyribose-phosphate aldolase; Provisional
Probab=30.63 E-value=2.7e+02 Score=25.70 Aligned_cols=66 Identities=20% Similarity=0.219 Sum_probs=42.7
Q ss_pred hhcCCceeeccCcch------HHHHHHHHHhhC-CCCCEEeEecccccHHHHHHHhCCCCCHHHHHHHHHHHHHHcCCCE
Q psy15126 211 VSQGADFLMVKPALP------YLDIISEVKSRH-PAYPLFVYQVSGEYAMLAFAAQAGALDLKRALMETLTCLRRGGADV 283 (300)
Q Consensus 211 a~~GADivmVkPsmm------~ld~Ir~~~d~~-~~vpi~aY~vSgeY~~~r~Aa~~~~~n~~eal~E~~~~~~r~GAD~ 283 (300)
.++|||+| |-|.- .+..+|-.++.. ..++|-+.. |..+.++| ..+.++||+.
T Consensus 146 ~~agadfI--KTsTG~~~~gat~~~v~~m~~~~~~~~~IKasG--------------GIrt~~~a-----~~~i~aGA~r 204 (221)
T PRK00507 146 KEAGADFV--KTSTGFSTGGATVEDVKLMRETVGPRVGVKASG--------------GIRTLEDA-----LAMIEAGATR 204 (221)
T ss_pred HHhCCCEE--EcCCCCCCCCCCHHHHHHHHHHhCCCceEEeeC--------------CcCCHHHH-----HHHHHcCcce
Confidence 57899998 66521 467777666652 356776652 33444333 3455899999
Q ss_pred EEecchHHHHHHHh
Q psy15126 284 IISYYTPRVLEWLR 297 (300)
Q Consensus 284 Ii~y~A~~~ld~l~ 297 (300)
|=|..+..+++-++
T Consensus 205 iGtS~~~~i~~~~~ 218 (221)
T PRK00507 205 LGTSAGVAILKGLE 218 (221)
T ss_pred EccCcHHHHHhccc
Confidence 99988888776443
No 339
>cd02931 ER_like_FMN Enoate reductase (ER)-like FMN-binding domain. Enoate reductase catalyzes the NADH-dependent reduction of carbon-carbon double bonds of several molecules, including nonactivated 2-enoates, alpha,beta-unsaturated aldehydes, cyclic ketones, and methylketones. ERs are similar to 2,4-dienoyl-CoA reductase from E. coli and to the old yellow enzyme from Saccharomyces cerevisiae.
Probab=30.59 E-value=1.1e+02 Score=30.22 Aligned_cols=84 Identities=8% Similarity=0.079 Sum_probs=52.2
Q ss_pred CCcccccCCCCCChHHHHHHHHHHhCC-CcEEEeeecCCCCCCCCcceeeCCCCceecHHhHHHHHHHHHHHHHcCCCcc
Q psy15126 4 RDETASFADTPDNPLFQVIPMIRKQFP-SLTIACDVCLCGYTSHGHCAIFNEDGSIHYEKTLKRLADISKAFSDAGAHIV 82 (300)
Q Consensus 4 kd~~~s~a~~~~~~~~~~i~~ik~~~p-~l~i~~Dvclc~yt~hGHcgi~~~~g~i~nd~Tl~~l~~~A~~~A~aGad~v 82 (300)
.|+.|..-.|.--++.+.|+.||++.| +..|..=+..+.|..-...+=...+.....-.|++...+.+..+.++|+|.|
T Consensus 190 tDeyGGslenR~rf~~eii~~vr~~~g~~f~v~vri~~~~~~~~~~~~~~~~~~~~~~g~~~e~~~~~~~~l~~~gvD~l 269 (382)
T cd02931 190 TDKYGGSLENRLRFAIEIVEEIKARCGEDFPVSLRYSVKSYIKDLRQGALPGEEFQEKGRDLEEGLKAAKILEEAGYDAL 269 (382)
T ss_pred CCcCCCCHHHHhHHHHHHHHHHHHhcCCCceEEEEEechhhccccccccccccccccCCCCHHHHHHHHHHHHHhCCCEE
Confidence 366665545555678899999999996 5666665555444211111000000012234577888888889999999999
Q ss_pred ccCCC
Q psy15126 83 APSDM 87 (300)
Q Consensus 83 APSdm 87 (300)
..|.-
T Consensus 270 ~vs~g 274 (382)
T cd02931 270 DVDAG 274 (382)
T ss_pred EeCCC
Confidence 88754
No 340
>PRK11173 two-component response regulator; Provisional
Probab=30.33 E-value=2.1e+02 Score=24.40 Aligned_cols=34 Identities=15% Similarity=0.281 Sum_probs=24.3
Q ss_pred cCCceeeccCcch---HHHHHHHHHhhCCCCCEEeEec
Q psy15126 213 QGADFLMVKPALP---YLDIISEVKSRHPAYPLFVYQV 247 (300)
Q Consensus 213 ~GADivmVkPsmm---~ld~Ir~~~d~~~~vpi~aY~v 247 (300)
...|+|++-..|+ -++.++.+++. ++.|++..+.
T Consensus 46 ~~~dlvild~~l~~~~g~~~~~~lr~~-~~~pii~lt~ 82 (237)
T PRK11173 46 NDINLVIMDINLPGKNGLLLARELREQ-ANVALMFLTG 82 (237)
T ss_pred CCCCEEEEcCCCCCCCHHHHHHHHhcC-CCCCEEEEEC
Confidence 4568888876554 57888887765 5789888743
No 341
>PRK09485 mmuM homocysteine methyltransferase; Provisional
Probab=30.29 E-value=45 Score=31.69 Aligned_cols=25 Identities=24% Similarity=0.247 Sum_probs=21.2
Q ss_pred CCHHHHHHHHHHHHHHcCCCEEEec
Q psy15126 263 LDLKRALMETLTCLRRGGADVIISY 287 (300)
Q Consensus 263 ~n~~eal~E~~~~~~r~GAD~Ii~y 287 (300)
++..|.|+++.+++.++|||+|.|-
T Consensus 42 ~~~Pe~V~~vH~~yl~AGadiI~Tn 66 (304)
T PRK09485 42 LENPELIYQVHLDYFRAGADCAITA 66 (304)
T ss_pred ccChHHHHHHHHHHHHhCCCEEEee
Confidence 3556899999999999999998763
No 342
>cd08601 GDPD_SaGlpQ_like Glycerophosphodiester phosphodiesterase domain of Staphylococcus aureus and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in uncharacterized glycerophosphodiester phosphodiesterase (GP-GDE, EC 3.1.4.46) from Staphylococcus aureus, Bacillus subtilis and similar proteins. Members in this family show very high sequence similarity to Escherichia coli periplasmic phosphodiesterase GlpQ, which catalyzes the Ca2+-dependent degradation of periplasmic glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols.
Probab=30.23 E-value=2.1e+02 Score=25.84 Aligned_cols=61 Identities=18% Similarity=0.204 Sum_probs=39.7
Q ss_pred hcCCceeeccCcch--HHHHHHHHHhhCCCCCEEeEecccccHHHHHHHhCCCCCHHHHHHHHHHHHHHcCCCEEEecch
Q psy15126 212 SQGADFLMVKPALP--YLDIISEVKSRHPAYPLFVYQVSGEYAMLAFAAQAGALDLKRALMETLTCLRRGGADVIISYYT 289 (300)
Q Consensus 212 ~~GADivmVkPsmm--~ld~Ir~~~d~~~~vpi~aY~vSgeY~~~r~Aa~~~~~n~~eal~E~~~~~~r~GAD~Ii~y~A 289 (300)
+.++..+ .|... .-+.+..+++. ++++.+|.| |. .|.+..+.+.|+|.|||-+.
T Consensus 193 ~~~~~~~--~~~~~~~~~~~v~~~~~~--g~~v~~wTv----------------n~----~~~~~~l~~~Gvd~IiTD~p 248 (256)
T cd08601 193 KEYAIGI--GPSIADADPWMVHLIHKK--GLLVHPYTV----------------NE----KADMIRLINWGVDGMFTNYP 248 (256)
T ss_pred HhcCeEe--CCchhhcCHHHHHHHHHC--CCEEEEEec----------------CC----HHHHHHHHhcCCCEEEeCCH
Confidence 3466665 56522 34667777765 689999987 32 23333444679999999887
Q ss_pred HHHHHHH
Q psy15126 290 PRVLEWL 296 (300)
Q Consensus 290 ~~~ld~l 296 (300)
..+.++|
T Consensus 249 ~~~~~~~ 255 (256)
T cd08601 249 DRLKEVL 255 (256)
T ss_pred HHHHHhh
Confidence 7666655
No 343
>TIGR02990 ectoine_eutA ectoine utilization protein EutA. Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti and Silicibacter pomeroyi. It is missing from two other species with the other ectoine transport and utilization genes: Pseudomonas putida and Agrobacterium tumefaciens.
Probab=30.15 E-value=2e+02 Score=26.82 Aligned_cols=45 Identities=16% Similarity=0.193 Sum_probs=33.0
Q ss_pred hcCCceeeccC-cchHHHHHHHHHhhCCCCCEEeEecccccHHHHHH
Q psy15126 212 SQGADFLMVKP-ALPYLDIISEVKSRHPAYPLFVYQVSGEYAMLAFA 257 (300)
Q Consensus 212 ~~GADivmVkP-smm~ld~Ir~~~d~~~~vpi~aY~vSgeY~~~r~A 257 (300)
..+||.|.+.= .|.-+++|.++-.++ +.||.+=+....+.++|.+
T Consensus 179 ~~~aDAifisCTnLrt~~vi~~lE~~l-GkPVlsSNqat~W~~Lr~~ 224 (239)
T TIGR02990 179 DPDADALFLSCTALRAATCAQRIEQAI-GKPVVTSNQATAWRCLRLC 224 (239)
T ss_pred CCCCCEEEEeCCCchhHHHHHHHHHHH-CCCEEEHHHHHHHHHHHHc
Confidence 56888775543 366899999988876 8999877666666666654
No 344
>cd07409 MPP_CD73_N CD73 ecto-5'-nucleotidase and related proteins, N-terminal metallophosphatase domain. CD73 is a mammalian ecto-5'-nucleotidase expressed in endothelial cells and lymphocytes that catalyzes the conversion of 5'-AMP to adenosine in the final step of a pathway that generates adenosine from ATP. This pathway also includes a CD39 nucleoside triphosphate dephosphorylase that mediates the dephosphorylation of ATP to ADP and then to 5'-AMP. These enzymes all have an N-terminal metallophosphatase domain and a C-terminal 5'nucleotidase domain. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). MPPs are functionally diverse, but all share a conserved domain with an active si
Probab=30.11 E-value=60 Score=30.17 Aligned_cols=26 Identities=27% Similarity=0.266 Sum_probs=21.5
Q ss_pred CCCHHHHHHHHHHHHHHcCCCEEEec
Q psy15126 262 ALDLKRALMETLTCLRRGGADVIISY 287 (300)
Q Consensus 262 ~~n~~eal~E~~~~~~r~GAD~Ii~y 287 (300)
+.|..++++|....+|++|||+||+-
T Consensus 164 ~~d~~~~~~~~v~~lr~~~~D~II~l 189 (281)
T cd07409 164 FLDEIEAAQKEADKLKAQGVNKIIAL 189 (281)
T ss_pred ECCHHHHHHHHHHHHHhcCCCEEEEE
Confidence 34677889999999987899999874
No 345
>TIGR00612 ispG_gcpE 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase. Chlamydial members of the family have a long insert. The family is largely restricted to Bacteria, where it is widely but not universally distributed. No homology can be detected between the GcpE family and other proteins.
Probab=30.06 E-value=5.1e+02 Score=26.30 Aligned_cols=71 Identities=18% Similarity=0.290 Sum_probs=46.9
Q ss_pred hhcCCceeecc-CcchHHHHHHHHHhhCCCCCEEeEecccccHHHHHHHhC---------CCCCHHHHHHHHHHHHHHcC
Q psy15126 211 VSQGADFLMVK-PALPYLDIISEVKSRHPAYPLFVYQVSGEYAMLAFAAQA---------GALDLKRALMETLTCLRRGG 280 (300)
Q Consensus 211 a~~GADivmVk-Psmm~ld~Ir~~~d~~~~vpi~aY~vSgeY~~~r~Aa~~---------~~~n~~eal~E~~~~~~r~G 280 (300)
+++|+|+|=|+ |.+--...+.++++.. ++|+.+=== -.|-..-.|++. |-+..+|-+.+.....|+.|
T Consensus 44 ~~aGceiVRvavp~~~~A~al~~I~~~~-~iPlVADIH-Fd~~lAl~a~~~g~dkiRINPGNig~~e~v~~vv~~ak~~~ 121 (346)
T TIGR00612 44 EEAGCDIVRVTVPDRESAAAFEAIKEGT-NVPLVADIH-FDYRLAALAMAKGVAKVRINPGNIGFRERVRDVVEKARDHG 121 (346)
T ss_pred HHcCCCEEEEcCCCHHHHHhHHHHHhCC-CCCEEEeeC-CCcHHHHHHHHhccCeEEECCCCCCCHHHHHHHHHHHHHCC
Confidence 79999999665 4455788888888876 699998511 126555555543 23334677777777776666
Q ss_pred CCE
Q psy15126 281 ADV 283 (300)
Q Consensus 281 AD~ 283 (300)
.-|
T Consensus 122 ipI 124 (346)
T TIGR00612 122 KAM 124 (346)
T ss_pred CCE
Confidence 544
No 346
>cd04734 OYE_like_3_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 3. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. One member of this subgroup, the Sinorhizobium meliloti stachydrine utilization protein stcD, has been idenified as a putative N-methylproline demethylase.
Probab=29.81 E-value=1.1e+02 Score=29.68 Aligned_cols=69 Identities=17% Similarity=0.199 Sum_probs=47.1
Q ss_pred CCcccccCCCCCChHHHHHHHHHHhCC-CcEEEeeecCCCCCCCCcceeeCCCCceecHHhHHHHHHHHHHHHHcC-CCc
Q psy15126 4 RDETASFADTPDNPLFQVIPMIRKQFP-SLTIACDVCLCGYTSHGHCAIFNEDGSIHYEKTLKRLADISKAFSDAG-AHI 81 (300)
Q Consensus 4 kd~~~s~a~~~~~~~~~~i~~ik~~~p-~l~i~~Dvclc~yt~hGHcgi~~~~g~i~nd~Tl~~l~~~A~~~A~aG-ad~ 81 (300)
+|+.|..-.+.--.+...++.||++.+ ++.|..=+....|- ++| .|.+...+.+..+.++| +|.
T Consensus 180 tD~yGGslenR~r~~~eiv~~ir~~vg~~~~v~iRl~~~~~~---------~~G-----~~~~e~~~~~~~l~~~G~vd~ 245 (343)
T cd04734 180 TDEYGGSLENRMRFLLEVLAAVRAAVGPDFIVGIRISGDEDT---------EGG-----LSPDEALEIAARLAAEGLIDY 245 (343)
T ss_pred CCcCCCCHHHHhHHHHHHHHHHHHHcCCCCeEEEEeehhhcc---------CCC-----CCHHHHHHHHHHHHhcCCCCE
Confidence 377776544555677789999999984 67777666554442 122 24455567788888998 899
Q ss_pred cccCC
Q psy15126 82 VAPSD 86 (300)
Q Consensus 82 vAPSd 86 (300)
|..|.
T Consensus 246 i~vs~ 250 (343)
T cd04734 246 VNVSA 250 (343)
T ss_pred EEeCC
Confidence 98764
No 347
>COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]
Probab=29.63 E-value=3.6e+02 Score=28.06 Aligned_cols=101 Identities=20% Similarity=0.323 Sum_probs=58.4
Q ss_pred ccchHhHHHHHHHHHhhhcccccCCCCCccccchhhhcCCceeec---cCcchHHHHHHHHHhhCCCCCEEeEecccccH
Q psy15126 176 IHYEKTLKRLADISKAFSDAVYVPNHNTDRFQARDVSQGADFLMV---KPALPYLDIISEVKSRHPAYPLFVYQVSGEYA 252 (300)
Q Consensus 176 i~nd~tl~~l~~~a~~~a~~~~~~~~n~~~~~~~Da~~GADivmV---kPsmm~ld~Ir~~~d~~~~vpi~aY~vSgeY~ 252 (300)
|+.|..+..+..+++..+.---.--.|.......--+...|+|+. =|.|-=++.+.++++..|++|+.....-|---
T Consensus 10 VDDd~~ir~~l~~~L~~~G~~v~~a~~~~~al~~i~~~~~~lvl~Di~mp~~~Gl~ll~~i~~~~~~~pVI~~Tg~g~i~ 89 (464)
T COG2204 10 VDDDPDIRELLEQALELAGYEVVTAESAEEALEALSESPFDLVLLDIRMPGMDGLELLKEIKSRDPDLPVIVMTGHGDID 89 (464)
T ss_pred EeCCHHHHHHHHHHHHHcCCeEEEeCCHHHHHHHHhcCCCCEEEEecCCCCCchHHHHHHHHhhCCCCCEEEEeCCCCHH
Confidence 456777777777777764211111222222222111223566543 34444799999999999999999997655555
Q ss_pred HHHHHHhCC-------CCCHHHHHHHHHHHH
Q psy15126 253 MLAFAAQAG-------ALDLKRALMETLTCL 276 (300)
Q Consensus 253 ~~r~Aa~~~-------~~n~~eal~E~~~~~ 276 (300)
+.-.|.+.| |++.++.+.-+...+
T Consensus 90 ~AV~A~k~GA~Dfl~KP~~~~~L~~~v~ral 120 (464)
T COG2204 90 TAVEALRLGAFDFLEKPFDLDRLLAIVERAL 120 (464)
T ss_pred HHHHHHhcCcceeeeCCCCHHHHHHHHHHHH
Confidence 666666665 556655444433333
No 348
>TIGR00725 conserved hypothetical protein, DprA/Smf-related, family 1. This model represents one branch of a subfamily of uncharacterized proteins. Both PSI-BLAST and weak hits by this model show a low level of similarity and suggest an evolutionary relationship of the subfamily to the DprA/Smf family of DNA-processing proteins involved in chromosomal transformation with foreign DNA. Both Aquifex aeolicus and Mycobacterium leprae have one member in each of two branches of this subfamily, suggesting the branches may have distinct functions. This family is one of several families within the scope of PFAM model pfam03641, several members of which are annotated as lysine decarboxylases. That larger family, and the branch described by this model, have a well-conserved motif PGGXGTXXE.
Probab=29.38 E-value=1.2e+02 Score=26.46 Aligned_cols=43 Identities=14% Similarity=-0.003 Sum_probs=35.6
Q ss_pred hcCCceeeccCcch-HHHHHHHHHhhCCCCCEEeEecccccHHHHH
Q psy15126 212 SQGADFLMVKPALP-YLDIISEVKSRHPAYPLFVYQVSGEYAMLAF 256 (300)
Q Consensus 212 ~~GADivmVkPsmm-~ld~Ir~~~d~~~~vpi~aY~vSgeY~~~r~ 256 (300)
-+=+|.++|-|+-. .|+-+.+++. + +.||+.+..+|+|.++..
T Consensus 89 ~~~sda~IvlpGG~GTL~E~~~a~~-~-~kpv~~l~~~g~~~~~l~ 132 (159)
T TIGR00725 89 VRSADVVVSVGGGYGTAIEILGAYA-L-GGPVVVLRGTGGWTDRLS 132 (159)
T ss_pred HHHCCEEEEcCCchhHHHHHHHHHH-c-CCCEEEEECCCcchHHHH
Confidence 34468888889854 8999999888 4 799999999999999875
No 349
>PRK08445 hypothetical protein; Provisional
Probab=29.20 E-value=3.9e+02 Score=26.13 Aligned_cols=52 Identities=19% Similarity=0.397 Sum_probs=35.1
Q ss_pred HHHHHHHHHhhCCCCCEEeEecccccHHHHHHHhCCCCCHHHHHHHHHHHHHHcCCCEEE
Q psy15126 226 YLDIISEVKSRHPAYPLFVYQVSGEYAMLAFAAQAGALDLKRALMETLTCLRRGGADVII 285 (300)
Q Consensus 226 ~ld~Ir~~~d~~~~vpi~aY~vSgeY~~~r~Aa~~~~~n~~eal~E~~~~~~r~GAD~Ii 285 (300)
|.+++|.+++++|++-+.+|+. +| +...+..+-... .|.+..+|++|.|.+.
T Consensus 108 ~~~l~~~Ik~~~p~i~~~a~s~-~e---i~~~a~~~~~~~----~e~L~~LkeAGl~~~~ 159 (348)
T PRK08445 108 YENLVSHIAQKYPTITIHGFSA-VE---IDYIAKISKISI----KEVLERLQAKGLSSIP 159 (348)
T ss_pred HHHHHHHHHHHCCCcEEEEccH-HH---HHHHHHHhCCCH----HHHHHHHHHcCCCCCC
Confidence 7999999999999898888743 11 222223222222 5788889889999654
No 350
>PRK09240 thiH thiamine biosynthesis protein ThiH; Reviewed
Probab=28.78 E-value=2.9e+02 Score=27.12 Aligned_cols=56 Identities=16% Similarity=0.185 Sum_probs=35.2
Q ss_pred hhcCCcee-ec---cCc-ch---HHHHHHHHHhhCCCCCEEeEecccccHHHHHHHhCCCCCHHHHHHHHHHHHHHcCCC
Q psy15126 211 VSQGADFL-MV---KPA-LP---YLDIISEVKSRHPAYPLFVYQVSGEYAMLAFAAQAGALDLKRALMETLTCLRRGGAD 282 (300)
Q Consensus 211 a~~GADiv-mV---kPs-mm---~ld~Ir~~~d~~~~vpi~aY~vSgeY~~~r~Aa~~~~~n~~eal~E~~~~~~r~GAD 282 (300)
.+.|+.=| +| .|. .. ++++||.+++.+|.+.|-+ |+++. |.+..+|++|+|
T Consensus 117 ~~~Gv~~i~lvgGe~p~~~~~e~l~~~i~~Ik~~~p~i~i~~----------------g~lt~-----e~l~~Lk~aGv~ 175 (371)
T PRK09240 117 KKLGFEHILLLTGEHEAKVGVDYIRRALPIAREYFSSVSIEV----------------QPLSE-----EEYAELVELGLD 175 (371)
T ss_pred HhCCCCEEEEeeCCCCCCCCHHHHHHHHHHHHHhCCCceecc----------------CCCCH-----HHHHHHHHcCCC
Confidence 46788533 55 254 22 6889999998876554422 34443 334678888999
Q ss_pred EEEec
Q psy15126 283 VIISY 287 (300)
Q Consensus 283 ~Ii~y 287 (300)
-+...
T Consensus 176 r~~i~ 180 (371)
T PRK09240 176 GVTVY 180 (371)
T ss_pred EEEEE
Confidence 77643
No 351
>PF04481 DUF561: Protein of unknown function (DUF561); InterPro: IPR007570 Protein in this entry are of unknown function and are found in cyanobacteria and the chloroplasts of algae. As the family is exclusively found in phototrophic organisms it may play a role in photosynthesis.
Probab=28.58 E-value=1.5e+02 Score=28.55 Aligned_cols=62 Identities=31% Similarity=0.379 Sum_probs=40.0
Q ss_pred hhcCCceeeccCcc---hH-----------HHHHHHHHhhCCCCCEEeEecccccHHHHHHHhCCCCCHHHHHHHHHHHH
Q psy15126 211 VSQGADFLMVKPAL---PY-----------LDIISEVKSRHPAYPLFVYQVSGEYAMLAFAAQAGALDLKRALMETLTCL 276 (300)
Q Consensus 211 a~~GADivmVkPsm---m~-----------ld~Ir~~~d~~~~vpi~aY~vSgeY~~~r~Aa~~~~~n~~eal~E~~~~~ 276 (300)
+++|||+| .=+- +| |..-|+.++-.|++|+-+= | - - .++.++- .+...++
T Consensus 78 V~AGAdli--EIGNfDsFY~qGr~f~a~eVL~Lt~~tR~LLP~~~LsVT-V--P--------H--iL~ld~Q-v~LA~~L 141 (242)
T PF04481_consen 78 VKAGADLI--EIGNFDSFYAQGRRFSAEEVLALTRETRSLLPDITLSVT-V--P--------H--ILPLDQQ-VQLAEDL 141 (242)
T ss_pred HHhCCCEE--EecchHHHHhcCCeecHHHHHHHHHHHHHhCCCCceEEe-c--C--------c--cccHHHH-HHHHHHH
Confidence 79999999 5441 23 7778888888999998653 2 1 1 1233333 2334455
Q ss_pred HHcCCCEEEecc
Q psy15126 277 RRGGADVIISYY 288 (300)
Q Consensus 277 ~r~GAD~Ii~y~ 288 (300)
.++|||+|-|.-
T Consensus 142 ~~~GaDiIQTEG 153 (242)
T PF04481_consen 142 VKAGADIIQTEG 153 (242)
T ss_pred HHhCCcEEEcCC
Confidence 568999998754
No 352
>PF03641 Lysine_decarbox: Possible lysine decarboxylase; InterPro: IPR005269 This entry represents a cytokinin-activating enzyme working in the direct activation pathway. It is a phosphoribohydrolase that converts inactive cytokinin nucleotides to the biologically active free-base forms [, ]. The proteins in this entry belong to the LOG family of proteins.; PDB: 1YDH_B 2Q4D_A 1RCU_C 1WEH_B 3SBX_F 3BQ9_B 2PMB_D 3GH1_D 1WEK_C 3QUA_A ....
Probab=28.53 E-value=1.9e+02 Score=24.15 Aligned_cols=52 Identities=21% Similarity=0.303 Sum_probs=38.1
Q ss_pred CceeeccCcch-HHHHHHHHHh-----hCCCCCEEeEecccccHHHHHHH----hCCCCCHH
Q psy15126 215 ADFLMVKPALP-YLDIISEVKS-----RHPAYPLFVYQVSGEYAMLAFAA----QAGALDLK 266 (300)
Q Consensus 215 ADivmVkPsmm-~ld~Ir~~~d-----~~~~vpi~aY~vSgeY~~~r~Aa----~~~~~n~~ 266 (300)
+|.+++-|+-. .++-+-+++. .++.+||.-|...|+|.++..-. +.|.++.+
T Consensus 54 sda~I~lPGG~GTl~El~~~~~~~~l~~~~~~Piil~~~~g~w~~l~~~l~~~~~~g~i~~~ 115 (133)
T PF03641_consen 54 SDAFIALPGGIGTLDELFEALTLMQLGRHNKVPIILLNIDGFWDPLLEFLDRMIEEGFISPD 115 (133)
T ss_dssp ESEEEEES-SHHHHHHHHHHHHHHHTTSSTS-EEEEEECGGCCHHHHHHHHHHHHTTSSSHH
T ss_pred CCEEEEEecCCchHHHHHHHHHHHhhccccCCCEEEeCCcchHHHHHHHHHHHHHCCCCCHH
Confidence 68888899855 7888877765 25567999999999999988754 56666653
No 353
>PF10881 DUF2726: Protein of unknown function (DUF2726); InterPro: IPR024402 This domain found in bacterial proteins has no known function.
Probab=28.51 E-value=1.7e+02 Score=23.83 Aligned_cols=54 Identities=11% Similarity=0.187 Sum_probs=33.5
Q ss_pred ecCCCCCCCCcceeeCCCCceecHHhHHHHHHHHHHHHHcCCCccccCCCCcchHHHHHHHHhh
Q psy15126 38 VCLCGYTSHGHCAIFNEDGSIHYEKTLKRLADISKAFSDAGAHIVAPSDMMDNRIHAIKQSLFT 101 (300)
Q Consensus 38 vclc~yt~hGHcgi~~~~g~i~nd~Tl~~l~~~A~~~A~aGad~vAPSdmMDgrv~air~aLd~ 101 (300)
+|.-++.+.+|. ..+...+|.=. ...++.+|++.+-.+.--.-.+..+|+.|++
T Consensus 71 ~~vIEld~~~h~----~~~~~~rD~~k------~~~l~~agiplir~~~~~~~~~~~l~~~l~~ 124 (126)
T PF10881_consen 71 VAVIELDGSSHD----QEKRQERDEFK------DRVLKKAGIPLIRISPKDSYSVEELRRDLRE 124 (126)
T ss_pred EEEEEecCcccc----chhhHHHHHHH------HHHHHHCCCCEEEEeCCCCCCHHHHHHHHHH
Confidence 444456566665 12233333333 3345678999998876666778888888765
No 354
>TIGR00587 nfo apurinic endonuclease (APN1). All proteins in this family for which functions are known are 5' AP endonculeases that are used in base excision repair and the repair of abasic sites in DNA.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=28.45 E-value=1.3e+02 Score=27.72 Aligned_cols=38 Identities=21% Similarity=0.186 Sum_probs=27.3
Q ss_pred HHHHHHHHHHcCCCcccc---------CCC-CcchHHHHHHHHhhCCC
Q psy15126 67 LADISKAFSDAGAHIVAP---------SDM-MDNRIHAIKQSLFTSRQ 104 (300)
Q Consensus 67 l~~~A~~~A~aGad~vAP---------Sdm-MDgrv~air~aLd~~g~ 104 (300)
|.+.....++.|++.+-. ..+ -++.+..+|+.+.++|+
T Consensus 13 ~~~a~~~~~~~G~~~~qif~~~P~~w~~~~~~~~~~~~~~~~~~~~~~ 60 (274)
T TIGR00587 13 LQAAYNRAAEIGATAFMFFLKSPRWWRRPMLEEEVIDWFKAALETNKN 60 (274)
T ss_pred HHHHHHHHHHhCCCEEEEEecCccccCCCCCCHHHHHHHHHHHHHcCC
Confidence 445666778889888764 122 26788889999988877
No 355
>PF10686 DUF2493: Protein of unknown function (DUF2493); InterPro: IPR019627 This entry is represented by Mycobacteriophage D29, Gp61. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. Members of this family are mainly Proteobacteria. The function is not known.
Probab=28.41 E-value=62 Score=24.96 Aligned_cols=30 Identities=10% Similarity=0.221 Sum_probs=25.8
Q ss_pred ccccCCCCCChHHHHHHHHHHhCCCcEEEe
Q psy15126 7 TASFADTPDNPLFQVIPMIRKQFPSLTIAC 36 (300)
Q Consensus 7 ~~s~a~~~~~~~~~~i~~ik~~~p~l~i~~ 36 (300)
+|+--++.-..+.+++..+++++|+++|++
T Consensus 9 ~GgR~~~D~~~i~~~Ld~~~~~~~~~~lvh 38 (71)
T PF10686_consen 9 TGGRDWTDHELIWAALDKVHARHPDMVLVH 38 (71)
T ss_pred EECCccccHHHHHHHHHHHHHhCCCEEEEE
Confidence 466778888899999999999999988774
No 356
>COG0821 gcpE 1-hydroxy-2-methyl-2-(e)-butenyl 4-diphosphate synthase [Lipid metabolism]
Probab=28.27 E-value=4.2e+02 Score=27.06 Aligned_cols=86 Identities=22% Similarity=0.362 Sum_probs=58.1
Q ss_pred ccchHhHHHHHHHHHhhhcccccCCCCCccccchhhhcCCceeecc-CcchHHHHHHHHHhhCCCCCEEeEecccccHHH
Q psy15126 176 IHYEKTLKRLADISKAFSDAVYVPNHNTDRFQARDVSQGADFLMVK-PALPYLDIISEVKSRHPAYPLFVYQVSGEYAML 254 (300)
Q Consensus 176 i~nd~tl~~l~~~a~~~a~~~~~~~~n~~~~~~~Da~~GADivmVk-Psmm~ld~Ir~~~d~~~~vpi~aY~vSgeY~~~ 254 (300)
.|-|.|+.++.+. .++|+|||=|. |.+---.++.+++++. ++|+.+== --.|.-.
T Consensus 33 ~Dv~aTv~QI~~L----------------------~~aG~dIVRvtv~~~e~A~A~~~Ik~~~-~vPLVaDi-Hf~~rla 88 (361)
T COG0821 33 ADVEATVAQIKAL----------------------ERAGCDIVRVTVPDMEAAEALKEIKQRL-NVPLVADI-HFDYRLA 88 (361)
T ss_pred ccHHHHHHHHHHH----------------------HHcCCCEEEEecCCHHHHHHHHHHHHhC-CCCEEEEe-eccHHHH
Confidence 4677887777665 68999999665 4455788899999986 89998731 1135555
Q ss_pred HHHHhC---------CCCCHHHHHHHHHHHHHHcCCCEEE
Q psy15126 255 AFAAQA---------GALDLKRALMETLTCLRRGGADVII 285 (300)
Q Consensus 255 r~Aa~~---------~~~n~~eal~E~~~~~~r~GAD~Ii 285 (300)
..+++. |-+-.++-+.|.....++.|--+=|
T Consensus 89 ~~~~~~g~~k~RINPGNig~~~~v~~vVe~Ak~~g~piRI 128 (361)
T COG0821 89 LEAAECGVDKVRINPGNIGFKDRVREVVEAAKDKGIPIRI 128 (361)
T ss_pred HHhhhcCcceEEECCcccCcHHHHHHHHHHHHHcCCCEEE
Confidence 555543 3334466778888887777765544
No 357
>TIGR01304 IMP_DH_rel_2 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase. Most species with a member of this family belong to the high GC Gram-positive bacteria, and these also have the IMP dehydrogenase described by TIGRFAMs equivalog model TIGR01302.
Probab=28.15 E-value=1.5e+02 Score=29.74 Aligned_cols=41 Identities=22% Similarity=0.324 Sum_probs=24.9
Q ss_pred CCccccchhhhcCCceeeccC----------cchHHHHHHHHHhhCCCCCEEe
Q psy15126 202 NTDRFQARDVSQGADFLMVKP----------ALPYLDIISEVKSRHPAYPLFV 244 (300)
Q Consensus 202 n~~~~~~~Da~~GADivmVkP----------smm~ld~Ir~~~d~~~~vpi~a 244 (300)
|+.++...=+++|||+|.|-+ +-..++ |.+.+++. ++||++
T Consensus 143 ~~~e~a~~l~eAGad~I~ihgrt~~q~~~sg~~~p~~-l~~~i~~~-~IPVI~ 193 (369)
T TIGR01304 143 NAREIAPIVVKAGADLLVIQGTLVSAEHVSTSGEPLN-LKEFIGEL-DVPVIA 193 (369)
T ss_pred CHHHHHHHHHHCCCCEEEEeccchhhhccCCCCCHHH-HHHHHHHC-CCCEEE
Confidence 333444444799999998642 222343 55555555 799986
No 358
>PRK07534 methionine synthase I; Validated
Probab=28.12 E-value=53 Score=32.06 Aligned_cols=25 Identities=16% Similarity=0.247 Sum_probs=21.9
Q ss_pred CCHHHHHHHHHHHHHHcCCCEEEec
Q psy15126 263 LDLKRALMETLTCLRRGGADVIISY 287 (300)
Q Consensus 263 ~n~~eal~E~~~~~~r~GAD~Ii~y 287 (300)
++..|.|.++.+++.++|||+|+|-
T Consensus 41 i~~Pe~V~~vH~~Yl~AGAdiI~Tn 65 (336)
T PRK07534 41 EDHPDNITALHQGFVDAGSDIILTN 65 (336)
T ss_pred ccCHHHHHHHHHHHHHhcCCEEEec
Confidence 4557999999999999999999964
No 359
>COG0284 PyrF Orotidine-5'-phosphate decarboxylase [Nucleotide transport and metabolism]
Probab=28.09 E-value=2.2e+02 Score=26.91 Aligned_cols=104 Identities=21% Similarity=0.194 Sum_probs=58.6
Q ss_pred hHHHHHHHH-HhhhcccccCCCCCccccchh-hhcCCceeeccCcc--hHHHHHHHHHhhCCCCCEEeEec---ccccHH
Q psy15126 181 TLKRLADIS-KAFSDAVYVPNHNTDRFQARD-VSQGADFLMVKPAL--PYLDIISEVKSRHPAYPLFVYQV---SGEYAM 253 (300)
Q Consensus 181 tl~~l~~~a-~~~a~~~~~~~~n~~~~~~~D-a~~GADivmVkPsm--m~ld~Ir~~~d~~~~vpi~aY~v---SgeY~~ 253 (300)
.++.|.+.. ..|.|.=+-|..||-.....- .+.|+|++.|-|++ -.+...+++++.+.. ..+.| ++...-
T Consensus 54 ~~~el~~~~~~VflDlK~~DIpnT~~~~~~~~~~~g~d~vtvH~~~G~~~~~~~~e~~~~~~~---~vl~vT~lts~~~~ 130 (240)
T COG0284 54 ILEELKARGKKVFLDLKLADIPNTVALAAKAAADLGADAVTVHAFGGFDMLRAAKEALEAGGP---FVLAVTSLTSMGEL 130 (240)
T ss_pred HHHHHHHhCCceEEeeecccchHHHHHHHHHhhhcCCcEEEEeCcCCHHHHHHHHHHHhhcCc---eEEEEEeCCCchhh
Confidence 344444444 456666666677776554433 67899999999985 378888888887633 33333 222221
Q ss_pred HHHHHhCCCC-CHHHHHHHHHHHHHHcCCCEEEecch
Q psy15126 254 LAFAAQAGAL-DLKRALMETLTCLRRGGADVIISYYT 289 (300)
Q Consensus 254 ~r~Aa~~~~~-n~~eal~E~~~~~~r~GAD~Ii~y~A 289 (300)
- -.+++.. ..++.+.+.....+..|-|.+.+.+.
T Consensus 131 ~--~~~~~~~~~~~~~v~~~a~~~~~~G~dgvv~~~~ 165 (240)
T COG0284 131 Q--LAELGINSSLEEQVLRLAKLAGEAGLDGVVCSAE 165 (240)
T ss_pred h--hhhccccchHHHHHHHHHHHhccCCceEEEcCHH
Confidence 1 1122322 23455555555554456666666553
No 360
>COG0176 MipB Transaldolase [Carbohydrate transport and metabolism]
Probab=28.05 E-value=64 Score=30.75 Aligned_cols=89 Identities=20% Similarity=0.162 Sum_probs=55.8
Q ss_pred CCCCCChHHHHHHHHHHhCCCcEEEeeecCCCCCCCCcceee--CCCCceecHHhHHHHHHHHHHHHHcCCCcccc--CC
Q psy15126 11 ADTPDNPLFQVIPMIRKQFPSLTIACDVCLCGYTSHGHCAIF--NEDGSIHYEKTLKRLADISKAFSDAGAHIVAP--SD 86 (300)
Q Consensus 11 a~~~~~~~~~~i~~ik~~~p~l~i~~Dvclc~yt~hGHcgi~--~~~g~i~nd~Tl~~l~~~A~~~A~aGad~vAP--Sd 86 (300)
+++-++-+.+|.+ |.+.+|+..|.-=+ |-|..|-..+= ..+| |.--.|+=-=+.||+..|++|+..|+| +-
T Consensus 72 s~d~e~mi~eA~~-L~~~~~~~~i~IKI---P~T~eGl~Ai~~L~~eG-I~~NvTLiFS~~QAl~aa~aga~~iSpFvgR 146 (239)
T COG0176 72 SFDAEAMIEEARR-LAKLIDNVGIVIKI---PATWEGLKAIKALEAEG-IKTNVTLIFSAAQALLAAEAGATYISPFVGR 146 (239)
T ss_pred cccHHHHHHHHHH-HHHhcCcCCeEEEe---CCCHHHHHHHHHHHHCC-CeeeEEEEecHHHHHHHHHhCCeEEEeecch
Confidence 4455666666654 44566776433332 66666644432 2345 544455555566899999999999999 32
Q ss_pred CCc------chHHHHHHHHhhCCC
Q psy15126 87 MMD------NRIHAIKQSLFTSRQ 104 (300)
Q Consensus 87 mMD------grv~air~aLd~~g~ 104 (300)
|.| +-|..+|++++..+.
T Consensus 147 i~D~~~d~~~~I~~~~~iy~~y~~ 170 (239)
T COG0176 147 IDDWGIDGMLGIAEAREIYDYYKQ 170 (239)
T ss_pred HHhhccCchHHHHHHHHHHHHhcc
Confidence 222 247788888888776
No 361
>PTZ00411 transaldolase-like protein; Provisional
Probab=28.01 E-value=67 Score=31.79 Aligned_cols=22 Identities=27% Similarity=0.320 Sum_probs=17.8
Q ss_pred hHHHHHHHHHHHHHcCCCcccc
Q psy15126 63 TLKRLADISKAFSDAGAHIVAP 84 (300)
Q Consensus 63 Tl~~l~~~A~~~A~aGad~vAP 84 (300)
|+--=..||+..|+||+..|+|
T Consensus 166 TlvFS~~QA~aaaeAGa~~ISP 187 (333)
T PTZ00411 166 TLLFSFAQAVACAQAGVTLISP 187 (333)
T ss_pred eEecCHHHHHHHHHcCCCEEEe
Confidence 3333357999999999999999
No 362
>TIGR00343 pyridoxal 5'-phosphate synthase, synthase subunit Pdx1. This protein had been believed to be a singlet oxygen resistance protein. Subsequent work showed that it is a protein of pyridoxine (vitamin B6) biosynthesis, and that pyridoxine quenches the highly toxic singlet form of oxygen produced by light in the presence of certain chemicals.
Probab=27.93 E-value=1.7e+02 Score=28.73 Aligned_cols=54 Identities=24% Similarity=0.249 Sum_probs=38.0
Q ss_pred hhcCCceeec---cCcch----------HHHHHHHHHhhCCCCCEEeEecccccHHHHHHHhCCCCCHHHHHHHHHHHHH
Q psy15126 211 VSQGADFLMV---KPALP----------YLDIISEVKSRHPAYPLFVYQVSGEYAMLAFAAQAGALDLKRALMETLTCLR 277 (300)
Q Consensus 211 a~~GADivmV---kPsmm----------~ld~Ir~~~d~~~~vpi~aY~vSgeY~~~r~Aa~~~~~n~~eal~E~~~~~~ 277 (300)
-++||=.||. -|+.. -...|+++++.- ++|||+=- ..|. +.|+..-.
T Consensus 27 e~aga~avm~le~~p~d~r~~ggv~R~~~p~~I~~I~~~V-~iPVig~~------------kigh------~~Ea~~L~- 86 (287)
T TIGR00343 27 EEAGAVAVMALERVPADIRASGGVARMSDPKMIKEIMDAV-SIPVMAKV------------RIGH------FVEAQILE- 86 (287)
T ss_pred HHcCceEEEeeccCchhhHhcCCeeecCCHHHHHHHHHhC-CCCEEEEe------------eccH------HHHHHHHH-
Confidence 5799999988 45543 378899999985 89999862 2222 44444444
Q ss_pred HcCCCEE
Q psy15126 278 RGGADVI 284 (300)
Q Consensus 278 r~GAD~I 284 (300)
..|+|+|
T Consensus 87 ~~GvDiI 93 (287)
T TIGR00343 87 ALGVDYI 93 (287)
T ss_pred HcCCCEE
Confidence 6899988
No 363
>cd00288 Pyruvate_Kinase Pyruvate kinase (PK): Large allosteric enzyme that regulates glycolysis through binding of the substrate, phosphoenolpyruvate, and one or more allosteric effectors. Like other allosteric enzymes, PK has a high substrate affinity R state and a low affinity T state. PK exists as several different isozymes, depending on organism and tissue type. In mammals, there are four PK isozymes: R, found in red blood cells, L, found in liver, M1, found in skeletal muscle, and M2, found in kidney, adipose tissue, and lung. PK forms a homotetramer, with each subunit containing three domains. The T state to R state transition of PK is more complex than in most allosteric enzymes, involving a concerted rotation of all 3 domains of each monomer in the homotetramer.
Probab=27.85 E-value=4e+02 Score=27.65 Aligned_cols=91 Identities=13% Similarity=0.196 Sum_probs=52.5
Q ss_pred cccchHhHHHHHHHHHhhhcccccCCCCCccccchhhhcCCceeeccCcch------------HHHHHHHHHhhCCCCCE
Q psy15126 175 SIHYEKTLKRLADISKAFSDAVYVPNHNTDRFQARDVSQGADFLMVKPALP------------YLDIISEVKSRHPAYPL 242 (300)
Q Consensus 175 ~i~nd~tl~~l~~~a~~~a~~~~~~~~n~~~~~~~Da~~GADivmVkPsmm------------~ld~Ir~~~d~~~~vpi 242 (300)
+|++-+-++.|-+| ++. +|.|||+|+.. +=.+|+..++ + +.|+
T Consensus 221 kIEt~~av~nldeI----------------------~~~-~DgImIargDLg~e~g~~~v~~~qk~ii~~~~~-~-gkpv 275 (480)
T cd00288 221 KIENQEGVNNFDEI----------------------LEA-SDGIMVARGDLGVEIPAEEVFLAQKMLIAKCNL-A-GKPV 275 (480)
T ss_pred EECCHHHHHhHHHH----------------------HHh-cCEEEECcchhhhhcChHHHHHHHHHHHHHHHH-c-CCCE
Confidence 46666777777766 334 89999999832 1223333333 3 4555
Q ss_pred E-eEecccccHHHHHHHhCCCCCHHHHHHHHHHHHHHcCCCEEEe-------cchHHHHHHHhh
Q psy15126 243 F-VYQVSGEYAMLAFAAQAGALDLKRALMETLTCLRRGGADVIIS-------YYTPRVLEWLRE 298 (300)
Q Consensus 243 ~-aY~vSgeY~~~r~Aa~~~~~n~~eal~E~~~~~~r~GAD~Ii~-------y~A~~~ld~l~~ 298 (300)
+ |=|+ +.. .-.++...|.=+-.+...+ ..|+|.||. +|-.+..+||++
T Consensus 276 i~ATqm------LeS-M~~~p~PTRAEvtDVanav-~dG~D~vmLS~ETa~G~yPveaV~~m~~ 331 (480)
T cd00288 276 ITATQM------LES-MIYNPRPTRAEVSDVANAV-LDGTDCVMLSGETAKGKYPVEAVKAMAR 331 (480)
T ss_pred EEEchh------HHH-HhhCCCCCchhhHHHHHHH-HhCCcEEEEechhcCCCCHHHHHHHHHH
Confidence 5 4544 111 1224555555556666677 489999998 444455555543
No 364
>cd08148 RuBisCO_large Ribulose bisphosphate carboxylase large chain. Ribulose bisphosphate carboxylase (Rubisco) plays an important role in the Calvin reductive pentose phosphate pathway. It catalyzes the primary CO2 fixation step. Rubisco is activated by carbamylation of an active site lysine, stabilized by a divalent cation, which then catalyzes the proton abstraction from the substrate ribulose 1,5 bisphosphate (RuBP) and leads to the formation of two molecules of 3-phosphoglycerate. Members of the Rubisco family can be divided into 4 subgroups, Form I-IV, which differ in their taxonomic distribution and subunit composition. Form I-III have Rubisco activity, while Form IV, also called Rubisco-like proteins (RLP), are missing critical active site residues and therefore do not catalyze CO2 fixation. They are believed to utilize a related enzymatic mechanism, but have divergent functions.
Probab=27.79 E-value=4.5e+02 Score=26.43 Aligned_cols=83 Identities=19% Similarity=0.186 Sum_probs=49.9
Q ss_pred hHHHHHHHHHhhhcccccCCCCCccccchhhhcCCceeeccCc--------ch---H----HHHHHHHHhhCCCCCEEeE
Q psy15126 181 TLKRLADISKAFSDAVYVPNHNTDRFQARDVSQGADFLMVKPA--------LP---Y----LDIISEVKSRHPAYPLFVY 245 (300)
Q Consensus 181 tl~~l~~~a~~~a~~~~~~~~n~~~~~~~Da~~GADivmVkPs--------mm---~----ld~Ir~~~d~~~~vpi~aY 245 (300)
|-+.+++++..+ +.-|.|+| |=. ++ + +++++++.++.-...+.+-
T Consensus 141 sp~~~a~~~y~~------------------~~GG~D~I--KDDE~l~~q~~~p~~eRv~~~~~a~~~a~~eTG~~~~y~~ 200 (366)
T cd08148 141 NPKYTAEAAYAA------------------ALGGLDLI--KDDETLTDQPFCPLRDRITEVAAALDRVQEETGEKKLYAV 200 (366)
T ss_pred CHHHHHHHHHHH------------------HhCCCCcc--ccccccCCCCCCcHHHHHHHHHHHHHHHHHhhCCcceEEE
Confidence 557888888887 68999998 743 22 4 3444444444333445555
Q ss_pred ecccccHHHHHHHhCCCCCHHHHHHHHHHHHHHcCCCEEEecc---hHHHHHHHhh
Q psy15126 246 QVSGEYAMLAFAAQAGALDLKRALMETLTCLRRGGADVIISYY---TPRVLEWLRE 298 (300)
Q Consensus 246 ~vSgeY~~~r~Aa~~~~~n~~eal~E~~~~~~r~GAD~Ii~y~---A~~~ld~l~~ 298 (300)
++|+.. +-++|-..-.+++|+..+|+-+ +...++.|++
T Consensus 201 NiT~~~---------------~em~~ra~~~~~~G~~~~mv~~~~~G~~~l~~l~~ 241 (366)
T cd08148 201 NVTAGT---------------FEIIERAERALELGANMLMVDVLTAGFSALQALAE 241 (366)
T ss_pred EccCCH---------------HHHHHHHHHHHHhCCCEEEEeccccchHHHHHHHH
Confidence 555431 3344444455578999998876 3445555554
No 365
>PRK07896 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=27.57 E-value=1.4e+02 Score=28.92 Aligned_cols=60 Identities=15% Similarity=0.180 Sum_probs=42.2
Q ss_pred ChHHHHHHHHHHhCCCcEEEeeecCCCCCCCCcceeeCCCCceecHHhHHHHHHHHHHHHHcCCCccccCCCCcchHHHH
Q psy15126 16 NPLFQVIPMIRKQFPSLTIACDVCLCGYTSHGHCAIFNEDGSIHYEKTLKRLADISKAFSDAGAHIVAPSDMMDNRIHAI 95 (300)
Q Consensus 16 ~~~~~~i~~ik~~~p~l~i~~Dvclc~yt~hGHcgi~~~~g~i~nd~Tl~~l~~~A~~~A~aGad~vAPSdmMDgrv~ai 95 (300)
|-+.++++..|+..|+.-|..-| .|+ +++..++++|+|+|-.-.|-...+...
T Consensus 184 G~i~~ai~~~r~~~~~~kIeVEv-----------------------~tl----~ea~eal~~gaDiI~LDnm~~e~vk~a 236 (289)
T PRK07896 184 GSVVAALRAVRAAAPDLPCEVEV-----------------------DSL----EQLDEVLAEGAELVLLDNFPVWQTQEA 236 (289)
T ss_pred CcHHHHHHHHHHhCCCCCEEEEc-----------------------CCH----HHHHHHHHcCCCEEEeCCCCHHHHHHH
Confidence 46788999999999876665544 233 367777999999998877775555555
Q ss_pred HHHHhhC
Q psy15126 96 KQSLFTS 102 (300)
Q Consensus 96 r~aLd~~ 102 (300)
-+.++..
T Consensus 237 v~~~~~~ 243 (289)
T PRK07896 237 VQRRDAR 243 (289)
T ss_pred HHHHhcc
Confidence 5544433
No 366
>PRK12656 fructose-6-phosphate aldolase; Reviewed
Probab=27.35 E-value=2.1e+02 Score=26.65 Aligned_cols=56 Identities=16% Similarity=0.278 Sum_probs=33.6
Q ss_pred hhcCCceeeccCcch-----------HHHHHHHHHhh-CCCCCEEeEecccccHHHHHHHhCCCCCHHHHHHHHHHHHHH
Q psy15126 211 VSQGADFLMVKPALP-----------YLDIISEVKSR-HPAYPLFVYQVSGEYAMLAFAAQAGALDLKRALMETLTCLRR 278 (300)
Q Consensus 211 a~~GADivmVkPsmm-----------~ld~Ir~~~d~-~~~vpi~aY~vSgeY~~~r~Aa~~~~~n~~eal~E~~~~~~r 278 (300)
+++||++| +|=.- .+..|++..++ ..++-|++=|+ .|. .+++... +
T Consensus 123 a~aGa~yv--sPyvgRi~d~g~D~~~~i~~i~~~~~~~~~~tkILaAS~---------------r~~----~~v~~a~-~ 180 (222)
T PRK12656 123 IEAGADYL--APYYNRMENLNIDSNAVIGQLAEAIDRENSDSKILAASF---------------KNV----AQVNKAF-A 180 (222)
T ss_pred HHCCCCEE--ecccchhhhcCCCHHHHHHHHHHHHHhcCCCCEEEEEec---------------CCH----HHHHHHH-H
Confidence 68999998 88311 24444555554 34566666544 344 4445555 5
Q ss_pred cCCCEEEecc
Q psy15126 279 GGADVIISYY 288 (300)
Q Consensus 279 ~GAD~Ii~y~ 288 (300)
.|||.+-+-|
T Consensus 181 ~G~d~vTvp~ 190 (222)
T PRK12656 181 LGAQAVTAGP 190 (222)
T ss_pred cCCCEEecCH
Confidence 8999865544
No 367
>cd03465 URO-D_like The URO-D _like protein superfamily includes bacterial and eukaryotic uroporphyrinogen decarboxylases (URO-D), coenzyme M methyltransferases and other putative bacterial methyltransferases. Uroporphyrinogen decarboxylase (URO-D) decarboxylates the four acetate side chains of uroporphyrinogen III (uro-III) to create coproporphyrinogen III, an important branching point of the tetrapyrrole biosynthetic pathway. The methyltransferases represented here are important for ability of methanogenic organisms to use other compounds than carbon dioxide for reduction to methane.
Probab=27.35 E-value=42 Score=31.07 Aligned_cols=68 Identities=13% Similarity=0.158 Sum_probs=41.3
Q ss_pred HHHHHHHHHHhCCC-cEEEeeecCCCCCCCCcceeeCCCC----ceecHHh--------HHHHHHHHHHHHHcCCCcccc
Q psy15126 18 LFQVIPMIRKQFPS-LTIACDVCLCGYTSHGHCAIFNEDG----SIHYEKT--------LKRLADISKAFSDAGAHIVAP 84 (300)
Q Consensus 18 ~~~~i~~ik~~~p~-l~i~~Dvclc~yt~hGHcgi~~~~g----~i~nd~T--------l~~l~~~A~~~A~aGad~vAP 84 (300)
+.++++.+|+++++ +.++. .+..|||.-.| ++..++ -..+.+- .+.+.+.+..+.++|+++|..
T Consensus 111 ~l~a~~~l~~~~~~~~~v~g-~~~gP~t~a~~--l~g~~~~~~~~~~~pe~~~~~l~~i~~~~~~~~~~~~~~G~d~i~i 187 (330)
T cd03465 111 LLEAIRLLKEELGDRVPVIG-AVGGPFTLASL--LMGASKFLMLLYTDPELVHKLLEKCTEFIIRYADALIEAGADGIYI 187 (330)
T ss_pred HHHHHHHHHHHhCCCeeeec-cCCCHHHHHHH--HHhHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEE
Confidence 45678888889885 54444 56788887643 221111 2223322 333455667778889999988
Q ss_pred CCCC
Q psy15126 85 SDMM 88 (300)
Q Consensus 85 SdmM 88 (300)
.+..
T Consensus 188 ~d~~ 191 (330)
T cd03465 188 SDPW 191 (330)
T ss_pred eCCc
Confidence 7754
No 368
>PF13714 PEP_mutase: Phosphoenolpyruvate phosphomutase; PDB: 1ZLP_A 3EOO_C 1UJQ_D 1O5Q_A 2DUA_A 2HJP_A 2HRW_A 2QIW_A 3KZ2_B 3IH1_B ....
Probab=27.20 E-value=92 Score=29.06 Aligned_cols=40 Identities=23% Similarity=0.414 Sum_probs=30.9
Q ss_pred cHHhHHHHHHHHHHHHHcCCCccccCCCC-cchHHHHHHHH
Q psy15126 60 YEKTLKRLADISKAFSDAGAHIVAPSDMM-DNRIHAIKQSL 99 (300)
Q Consensus 60 nd~Tl~~l~~~A~~~A~aGad~vAPSdmM-Dgrv~air~aL 99 (300)
....++...+.+..+++||||+|-+-... ...+..+.+.+
T Consensus 150 ~~~~~deaI~R~~aY~eAGAD~ifi~~~~~~~~i~~~~~~~ 190 (238)
T PF13714_consen 150 AEEGLDEAIERAKAYAEAGADMIFIPGLQSEEEIERIVKAV 190 (238)
T ss_dssp HHHHHHHHHHHHHHHHHTT-SEEEETTSSSHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHcCCCEEEeCCCCCHHHHHHHHHhc
Confidence 67788999999999999999999874443 44567777777
No 369
>PRK12309 transaldolase/EF-hand domain-containing protein; Provisional
Probab=27.03 E-value=72 Score=32.13 Aligned_cols=47 Identities=19% Similarity=0.229 Sum_probs=31.8
Q ss_pred hHHHHHHHHHHHHHcCCCcccc--CCCCc------c-------------hHHHHHHHHhhCCCCCCcccc
Q psy15126 63 TLKRLADISKAFSDAGAHIVAP--SDMMD------N-------------RIHAIKQSLFTSRQSSTTGLL 111 (300)
Q Consensus 63 Tl~~l~~~A~~~A~aGad~vAP--SdmMD------g-------------rv~air~aLd~~g~~~~v~Im 111 (300)
|+--=..||+..|+||+..|+| +-+.| | .+..|.+.+...|+ +|-||
T Consensus 160 TlvFS~~QA~aaaeAGa~~ISPfVgRi~dw~~~~~g~~~~~~~~dpGv~~v~~i~~~~~~~~~--~T~Im 227 (391)
T PRK12309 160 TLLFGFHQAIACAEAGVTLISPFVGRILDWYKKETGRDSYPGAEDPGVQSVTQIYNYYKKFGY--KTEVM 227 (391)
T ss_pred eeecCHHHHHHHHHcCCCEEEeecchhhhhhhhccCCCccccccchHHHHHHHHHHHHHhcCC--CcEEE
Confidence 3333357999999999999999 33333 1 25666666666777 45666
No 370
>TIGR03849 arch_ComA phosphosulfolactate synthase. This model finds the ComA (Coenzyme M biosynthesis A) protein, phosphosulfolactate synthase, in methanogenic archaea. The ComABC pathway is one of at least two pathways to the intermediate sulfopyruvate. Coenzyme M occurs rarely and sporadically outside of the archaea, as for expoxide metabolism in Xanthobacter autotrophicus Py2, but candidate phosphosulfolactate synthases from that and other species occur fall below the cutoff and outside the scope of this model. This model deliberately is narrower in scope than pfam02679.
Probab=26.99 E-value=87 Score=29.79 Aligned_cols=71 Identities=13% Similarity=0.070 Sum_probs=44.4
Q ss_pred chhhhcCCceeeccCc---c---hHHHHHHHHHhh-CCCCCEEeEecccccHHHHHHHhCCCCCHHHHHHHHHHHHHHcC
Q psy15126 208 ARDVSQGADFLMVKPA---L---PYLDIISEVKSR-HPAYPLFVYQVSGEYAMLAFAAQAGALDLKRALMETLTCLRRGG 280 (300)
Q Consensus 208 ~~Da~~GADivmVkPs---m---m~ld~Ir~~~d~-~~~vpi~aY~vSgeY~~~r~Aa~~~~~n~~eal~E~~~~~~r~G 280 (300)
..=-+-|-|.|=|.=+ + .++..|+++++. |.-.|=+..+- .......+..+.+...-.++ ++|
T Consensus 78 ~~~k~lGf~~IEiS~G~~~i~~~~~~rlI~~~~~~g~~v~~EvG~K~---------~~~~~~~~~~~~i~~~~~~L-eAG 147 (237)
T TIGR03849 78 NECDELGFEAVEISDGSMEISLEERCNLIERAKDNGFMVLSEVGKKS---------PEKDSELTPDDRIKLINKDL-EAG 147 (237)
T ss_pred HHHHHcCCCEEEEcCCccCCCHHHHHHHHHHHHhCCCeEeccccccC---------CcccccCCHHHHHHHHHHHH-HCC
Confidence 3334567777744333 2 288999999987 42222222221 11122457788888888888 899
Q ss_pred CCEEEecc
Q psy15126 281 ADVIISYY 288 (300)
Q Consensus 281 AD~Ii~y~ 288 (300)
|+.||+-.
T Consensus 148 A~~ViiEa 155 (237)
T TIGR03849 148 ADYVIIEG 155 (237)
T ss_pred CcEEEEee
Confidence 99999865
No 371
>PRK14041 oxaloacetate decarboxylase; Provisional
Probab=26.89 E-value=1.2e+02 Score=31.19 Aligned_cols=68 Identities=19% Similarity=0.259 Sum_probs=46.9
Q ss_pred HHHHHHHHHhh------CCCCCEEeEec-ccccHHHHHH-HhCCCCCHHHHHHHHHHHHHHcCCCEEEecchHHHH
Q psy15126 226 YLDIISEVKSR------HPAYPLFVYQV-SGEYAMLAFA-AQAGALDLKRALMETLTCLRRGGADVIISYYTPRVL 293 (300)
Q Consensus 226 ~ld~Ir~~~d~------~~~vpi~aY~v-SgeY~~~r~A-a~~~~~n~~eal~E~~~~~~r~GAD~Ii~y~A~~~l 293 (300)
|+.-+|+.-.. -++.-+.-||+ -|-|+-++.= -++|..|+=+.++|-....++..-+.++|-|..++.
T Consensus 268 ~~~~vr~~y~~~~~~~~~~~~~v~~~q~PGG~~snl~~Ql~~~g~~~~~~~v~~e~~~v~~~lG~~~~VTP~Sq~v 343 (467)
T PRK14041 268 YFTKVREKYSEYDVGMKSPDSRILVSQIPGGMYSNLVKQLKEQKMLHKLDKVLEEVPRVRKDLGYPPLVTPTSQIV 343 (467)
T ss_pred HHHHHHHHHhhcCCCCCCCCcCeeeCCCCcchHHHHHHHHHHCCcHhHHHHHHHHHHHHHHHcCCCCcCCChhHHH
Confidence 66666655432 24556777777 6667666553 367988986666676777778899999999977654
No 372
>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=26.86 E-value=3.7e+02 Score=24.92 Aligned_cols=45 Identities=22% Similarity=0.258 Sum_probs=27.6
Q ss_pred HHHHHHHHHhhCCCCCEEeEecccccHHHHHHHhCCCCCHHHHHHHHHHHHHHcCCCEEEecchH
Q psy15126 226 YLDIISEVKSRHPAYPLFVYQVSGEYAMLAFAAQAGALDLKRALMETLTCLRRGGADVIISYYTP 290 (300)
Q Consensus 226 ~ld~Ir~~~d~~~~vpi~aY~vSgeY~~~r~Aa~~~~~n~~eal~E~~~~~~r~GAD~Ii~y~A~ 290 (300)
.+..++++++.. ++||++= | |..+.+++ .| .+ ++|||+|++.-+.
T Consensus 219 ~~~~i~~i~~~~-~ipii~~---G-----------GI~~~~da-~~---~l-~~GAd~V~igra~ 263 (296)
T cd04740 219 ALRMVYQVYKAV-EIPIIGV---G-----------GIASGEDA-LE---FL-MAGASAVQVGTAN 263 (296)
T ss_pred HHHHHHHHHHhc-CCCEEEE---C-----------CCCCHHHH-HH---HH-HcCCCEEEEchhh
Confidence 467777777765 6787753 1 23344322 23 33 5899999987654
No 373
>PF14606 Lipase_GDSL_3: GDSL-like Lipase/Acylhydrolase family; PDB: 3SKV_B.
Probab=26.84 E-value=48 Score=30.09 Aligned_cols=65 Identities=14% Similarity=0.226 Sum_probs=34.3
Q ss_pred HHHHHHHHHhhCCCCCEEeEec-ccccHHHHHHHhCCCCCHHHHHHHHHHHHHHcCCCEEEecchH
Q psy15126 226 YLDIISEVKSRHPAYPLFVYQV-SGEYAMLAFAAQAGALDLKRALMETLTCLRRGGADVIISYYTP 290 (300)
Q Consensus 226 ~ld~Ir~~~d~~~~vpi~aY~v-SgeY~~~r~Aa~~~~~n~~eal~E~~~~~~r~GAD~Ii~y~A~ 290 (300)
....++.+++.||++||..=+- -..-+-+....+......+++++|+...++.+|=.=|-.-.+.
T Consensus 80 ~~~fv~~iR~~hP~tPIllv~~~~~~~~~~~~~~~~~~~~~~~~~r~~v~~l~~~g~~nl~~l~g~ 145 (178)
T PF14606_consen 80 LDGFVKTIREAHPDTPILLVSPIPYPAGYFDNSRGETVEEFREALREAVEQLRKEGDKNLYYLDGE 145 (178)
T ss_dssp HHHHHHHHHTT-SSS-EEEEE----TTTTS--TTS--HHHHHHHHHHHHHHHHHTT-TTEEEE-HH
T ss_pred HHHHHHHHHHhCCCCCEEEEecCCccccccCchHHHHHHHHHHHHHHHHHHHHHcCCCcEEEeCch
Confidence 4666777778899999998763 1111112221222333457899999999877776544433333
No 374
>PRK00278 trpC indole-3-glycerol-phosphate synthase; Reviewed
Probab=26.82 E-value=5.3e+02 Score=24.09 Aligned_cols=47 Identities=17% Similarity=0.198 Sum_probs=30.1
Q ss_pred hhcCCceeecc--Ccch--HHHHHHHHHhhCCCCCEEeEec-ccccHHHHHHHh
Q psy15126 211 VSQGADFLMVK--PALP--YLDIISEVKSRHPAYPLFVYQV-SGEYAMLAFAAQ 259 (300)
Q Consensus 211 a~~GADivmVk--Psmm--~ld~Ir~~~d~~~~vpi~aY~v-SgeY~~~r~Aa~ 259 (300)
.+.||+.|-|- |... -++.|+++++. .++||+.--. .-+| .+..+..
T Consensus 80 ~~~GA~aisvlte~~~f~g~~~~l~~v~~~-v~iPvl~kdfi~~~~-qi~~a~~ 131 (260)
T PRK00278 80 EAGGAACLSVLTDERFFQGSLEYLRAARAA-VSLPVLRKDFIIDPY-QIYEARA 131 (260)
T ss_pred HhCCCeEEEEecccccCCCCHHHHHHHHHh-cCCCEEeeeecCCHH-HHHHHHH
Confidence 57899998552 2211 47888888876 4799996433 4455 5555543
No 375
>TIGR01235 pyruv_carbox pyruvate carboxylase. This enzyme plays a role in gluconeogensis but not glycolysis.
Probab=26.52 E-value=9.3e+02 Score=27.86 Aligned_cols=82 Identities=16% Similarity=0.288 Sum_probs=53.8
Q ss_pred hcCCceeeccCcchHHHHHHHHHhhC------CCCCEEeEec-ccccHHHHHHH-hCCCCCHHHHHHHHHHHHHHcCCCE
Q psy15126 212 SQGADFLMVKPALPYLDIISEVKSRH------PAYPLFVYQV-SGEYAMLAFAA-QAGALDLKRALMETLTCLRRGGADV 283 (300)
Q Consensus 212 ~~GADivmVkPsmm~ld~Ir~~~d~~------~~vpi~aY~v-SgeY~~~r~Aa-~~~~~n~~eal~E~~~~~~r~GAD~ 283 (300)
+-|.|+=.+.+---|+..+|+.-..| ++.-|.-|++ -|-|.-++.=+ ++|..|+=+.++|.....++..-|+
T Consensus 790 ~tgidl~~l~~is~~~~~vr~~y~~~~~~~~~~~~~v~~~~~PGG~~snl~~q~~~~g~~~~~~~v~~~~~~v~~~lG~~ 869 (1143)
T TIGR01235 790 DPGLNVAWIRELSAYWEAVRNLYAAFESDLKGPASEVYLHEMPGGQYTNLQFQARSLGLGDRWHEVKQAYREANQMFGDI 869 (1143)
T ss_pred CCCcCHHHHHHHHHHHHHHHHHhhcCCCCCcCCCcCeEEecCCCcccchHHHHHHHCCcHhhHHHHHHHHHHHHHHcCCC
Confidence 44555543333333777777665433 3445677777 77888777654 5788888556666666666777799
Q ss_pred EEecchHHHH
Q psy15126 284 IISYYTPRVL 293 (300)
Q Consensus 284 Ii~y~A~~~l 293 (300)
++|-|.-++.
T Consensus 870 ~~VTP~Sq~v 879 (1143)
T TIGR01235 870 VKVTPSSKVV 879 (1143)
T ss_pred ceECChhHhH
Confidence 9999987765
No 376
>COG5016 Pyruvate/oxaloacetate carboxyltransferase [Energy production and conversion]
Probab=26.50 E-value=1.3e+02 Score=31.35 Aligned_cols=60 Identities=20% Similarity=0.233 Sum_probs=44.0
Q ss_pred CCCCCChHHHHHHHHHHhCCCcEEEeeecCCCCCCCCcceeeCCCCceecHHhHHHHHHHHHHHHHcCCCccccCCCC
Q psy15126 11 ADTPDNPLFQVIPMIRKQFPSLTIACDVCLCGYTSHGHCAIFNEDGSIHYEKTLKRLADISKAFSDAGAHIVAPSDMM 88 (300)
Q Consensus 11 a~~~~~~~~~~i~~ik~~~p~l~i~~Dvclc~yt~hGHcgi~~~~g~i~nd~Tl~~l~~~A~~~A~aGad~vAPSdmM 88 (300)
|.|+-.-++++|+++|+.--.+... + .||..= --|++..++.|.++++.|+|-||.-||-
T Consensus 120 AlND~RNl~~ai~a~kk~G~h~q~~----i-~YT~sP-------------vHt~e~yv~~akel~~~g~DSIciKDma 179 (472)
T COG5016 120 ALNDVRNLKTAIKAAKKHGAHVQGT----I-SYTTSP-------------VHTLEYYVELAKELLEMGVDSICIKDMA 179 (472)
T ss_pred hccchhHHHHHHHHHHhcCceeEEE----E-EeccCC-------------cccHHHHHHHHHHHHHcCCCEEEeeccc
Confidence 5677777899999999875433322 2 243321 2378899999999999999999997763
No 377
>PRK08444 hypothetical protein; Provisional
Probab=26.29 E-value=1.5e+02 Score=29.28 Aligned_cols=88 Identities=15% Similarity=0.232 Sum_probs=51.3
Q ss_pred hHHHHHHHHHHhCCCcEEEeeecCCCCCCCCcceeeCCCCceecHHhHHHHHHHHHHHHHc-CC--------CccccCCC
Q psy15126 17 PLFQVIPMIRKQFPSLTIACDVCLCGYTSHGHCAIFNEDGSIHYEKTLKRLADISKAFSDA-GA--------HIVAPSDM 87 (300)
Q Consensus 17 ~~~~~i~~ik~~~p~l~i~~Dvclc~yt~hGHcgi~~~~g~i~nd~Tl~~l~~~A~~~A~a-Ga--------d~vAPSdm 87 (300)
.+.++++.||+.+|++.|- .||..==.- +-+.-.+..++++++|.+.-+.---- |+ +.|+|.-.
T Consensus 114 ~y~e~ir~Ik~~~p~i~i~------a~s~~Ei~~-~a~~~g~~~~e~l~~LkeAGl~~~~g~~aEi~~~~vr~~I~p~k~ 186 (353)
T PRK08444 114 WYLEIFKKIKEAYPNLHVK------AMTAAEVDF-LSRKFGKSYEEVLEDMLEYGVDSMPGGGAEIFDEEVRKKICKGKV 186 (353)
T ss_pred HHHHHHHHHHHHCCCceEe------eCCHHHHHH-HHHHcCCCHHHHHHHHHHhCcccCCCCCchhcCHHHHhhhCCCCC
Confidence 4678999999999987653 222110000 00011244555666665544432211 22 34588777
Q ss_pred CcchHHHHHHHHhhCCCCCCcccc
Q psy15126 88 MDNRIHAIKQSLFTSRQSSTTGLL 111 (300)
Q Consensus 88 MDgrv~air~aLd~~g~~~~v~Im 111 (300)
-.-|...+.+..-+.|+.++.++|
T Consensus 187 ~~~~~~~i~~~a~~~Gi~~~sg~l 210 (353)
T PRK08444 187 SSERWLEIHKYWHKKGKMSNATML 210 (353)
T ss_pred CHHHHHHHHHHHHHcCCCccceeE
Confidence 777888888888889997776654
No 378
>KOG0067|consensus
Probab=26.24 E-value=16 Score=37.36 Aligned_cols=140 Identities=18% Similarity=0.168 Sum_probs=76.4
Q ss_pred HHHHHHHHHHHcCCCccccCCCCcchHHHHHHHHhhCCCCCCcccccchhhhh---cccchhh-hhhhcCCCCCCCccee
Q psy15126 66 RLADISKAFSDAGAHIVAPSDMMDNRIHAIKQSLFTSRQSSTTGLLSYSAKFC---SAFYGPF-REAAGSAPTFGDRSCY 141 (300)
Q Consensus 66 ~l~~~A~~~A~aGad~vAPSdmMDgrv~air~aLd~~g~~~~v~ImsysaK~a---S~~YGPf-Rda~gS~~~~gdr~~y 141 (300)
++.++....+-..+.+..|--|.- |++.++.+++.+|||. =.||-|| +|-+.++ ||+.++|
T Consensus 161 q~~~q~~e~a~g~~~~~G~~~g~~-------------g~gr~g~av~~~A~afg~~~ifydp~~~~g~~~~--lg~~rVy 225 (435)
T KOG0067|consen 161 QGLEQVREAACGLARIRGPTLGLI-------------GFGRTGQAVALRAKAFGFVVIFYDPYLIDGIDKS--LGLQRVY 225 (435)
T ss_pred echhhhhhhhhccccccccceeee-------------ccccccceehhhhhcccceeeeecchhhhhhhhh--cccceec
Confidence 344455555555555555533332 3444444555555543 3699999 8888775 5788888
Q ss_pred eCCCCCCceEEEEeecccCCCCCCccccccCCCcccchHhHHHHHHHHHhhhcccccCCCCCccccchhhhcCCceeecc
Q psy15126 142 QLPCGSKGLAIRAAVCLCGYTSHGHCAIFNEDGSIHYEKTLKRLADISKAFSDAVYVPNHNTDRFQARDVSQGADFLMVK 221 (300)
Q Consensus 142 Q~~~~~~~~ai~~dvclc~yt~hGHcgi~~~~g~i~nd~tl~~l~~~a~~~a~~~~~~~~n~~~~~~~Da~~GADivmVk 221 (300)
.|.. +-..+| | -.=||..=.++..+.||-|+++ .++||-.|-.+
T Consensus 226 tlqd----~~~~sd-~-----~S~hc~~~~~~h~lin~~tikq--------------------------m~qGaflvnta 269 (435)
T KOG0067|consen 226 TLQD----LLYQSD-C-----VSLHCNLNEHNHELINDFTIKQ--------------------------MRQGAFLVNTA 269 (435)
T ss_pred ccch----hhhhcc-c-----eeeecccCccccccccccccee--------------------------ecccceEeeec
Confidence 8753 222222 2 2235655555566777777555 56777776555
Q ss_pred Cc-chHHHHHHHHHhhCCCCCEEeEecccccHHHHHHH
Q psy15126 222 PA-LPYLDIISEVKSRHPAYPLFVYQVSGEYAMLAFAA 258 (300)
Q Consensus 222 Ps-mm~ld~Ir~~~d~~~~vpi~aY~vSgeY~~~r~Aa 258 (300)
+. +--=..+.++++.- .+-..+ .-+-.|+|+++|.
T Consensus 270 ~gglvdekaLaqaLk~G-~i~~aa-~~~~~~~~l~d~p 305 (435)
T KOG0067|consen 270 RGGLVDEKALAQALKSG-RIRGAA-PRSFKQGPLKDAP 305 (435)
T ss_pred ccccCChHHHHhhhccC-ceeccc-CcccccccccCCC
Confidence 54 22334445555431 111111 1145788888875
No 379
>PRK02412 aroD 3-dehydroquinate dehydratase; Provisional
Probab=26.20 E-value=4.2e+02 Score=24.61 Aligned_cols=23 Identities=26% Similarity=0.446 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHcCCCEEEecc
Q psy15126 266 KRALMETLTCLRRGGADVIISYY 288 (300)
Q Consensus 266 ~eal~E~~~~~~r~GAD~Ii~y~ 288 (300)
++.+.+.....++.|.-+|++|.
T Consensus 121 ~~~~~~l~~~~~~~~~kvI~S~H 143 (253)
T PRK02412 121 KDVVKEMVAFAHEHGVKVVLSYH 143 (253)
T ss_pred hHHHHHHHHHHHHcCCEEEEeeC
Confidence 34556666666556777777775
No 380
>COG3010 NanE Putative N-acetylmannosamine-6-phosphate epimerase [Carbohydrate transport and metabolism]
Probab=26.19 E-value=1.4e+02 Score=28.53 Aligned_cols=55 Identities=15% Similarity=0.139 Sum_probs=33.2
Q ss_pred HHHHHHHHHHcCCCccccCCCCcchHH-HHHHHHhhCCCCCCcccccchhhhhcccc
Q psy15126 67 LADISKAFSDAGAHIVAPSDMMDNRIH-AIKQSLFTSRQSSTTGLLSYSAKFCSAFY 122 (300)
Q Consensus 67 l~~~A~~~A~aGad~vAPSdmMDgrv~-air~aLd~~g~~~~v~ImsysaK~aS~~Y 122 (300)
..+..-.++++|+++||--..---|-. .+.+.+....+ .+..+|+=-+-|--.+|
T Consensus 87 tlkeVd~L~~~Ga~IIA~DaT~R~RP~~~~~~~i~~~k~-~~~l~MAD~St~ee~l~ 142 (229)
T COG3010 87 TLKEVDALAEAGADIIAFDATDRPRPDGDLEELIARIKY-PGQLAMADCSTFEEGLN 142 (229)
T ss_pred cHHHHHHHHHCCCcEEEeecccCCCCcchHHHHHHHhhc-CCcEEEeccCCHHHHHH
Confidence 345567789999999998444333332 55555555666 66778855443333333
No 381
>cd00953 KDG_aldolase KDG (2-keto-3-deoxygluconate) aldolases found in archaea. This subfamily of enzymes is adapted for high thermostability and shows specificity for non-phosphorylated substrates. The enzyme catalyses the reversible aldol cleavage of 2-keto-3-dexoygluconate to pyruvate and glyceraldehyde, the third step of a modified non-phosphorylated Entner-Doudoroff pathway of glucose oxidation. KDG aldolase shows no significant sequence similarity to microbial 2-keto-3-deoxyphosphogluconate (KDPG) aldolases, and the enzyme shows no activity with glyceraldehyde 3-phosphate as substrate. The enzyme is a tetramer and a member of the DHDPS family of Schiff-base-dependent class I aldolases.
Probab=26.04 E-value=1.6e+02 Score=27.56 Aligned_cols=34 Identities=26% Similarity=0.571 Sum_probs=23.3
Q ss_pred hhcCCceeeccCcc--h------HHHHHHHHHhhCCCCCEEeEec
Q psy15126 211 VSQGADFLMVKPAL--P------YLDIISEVKSRHPAYPLFVYQV 247 (300)
Q Consensus 211 a~~GADivmVkPsm--m------~ld~Ir~~~d~~~~vpi~aY~v 247 (300)
.+.|||.|||-|-. . -.+..+++.+ ++||+.|+.
T Consensus 88 ~~~Gad~v~v~~P~y~~~~~~~~i~~yf~~v~~---~lpv~iYn~ 129 (279)
T cd00953 88 KSFGIYAIASLPPYYFPGIPEEWLIKYFTDISS---PYPTFIYNY 129 (279)
T ss_pred HHcCCCEEEEeCCcCCCCCCHHHHHHHHHHHHh---cCCEEEEeC
Confidence 57999999986542 1 1233444545 699999987
No 382
>PLN02623 pyruvate kinase
Probab=26.03 E-value=2.7e+02 Score=29.84 Aligned_cols=14 Identities=21% Similarity=0.100 Sum_probs=11.6
Q ss_pred hhcCCceeeccCcc
Q psy15126 211 VSQGADFLMVKPAL 224 (300)
Q Consensus 211 a~~GADivmVkPsm 224 (300)
+-+|+|.|||+|+.
T Consensus 338 Il~g~DgImIgrgD 351 (581)
T PLN02623 338 IITASDGAMVARGD 351 (581)
T ss_pred HHHhCCEEEECcch
Confidence 44599999999983
No 383
>PRK09432 metF 5,10-methylenetetrahydrofolate reductase; Provisional
Probab=25.87 E-value=6e+02 Score=24.40 Aligned_cols=78 Identities=19% Similarity=0.146 Sum_probs=43.4
Q ss_pred hhcCCceeeccCc-c--hHHHHHHHHHhhCCCCCEEeEec-ccccHHHHHHHhC--------------CCCCH-H-----
Q psy15126 211 VSQGADFLMVKPA-L--PYLDIISEVKSRHPAYPLFVYQV-SGEYAMLAFAAQA--------------GALDL-K----- 266 (300)
Q Consensus 211 a~~GADivmVkPs-m--m~ld~Ir~~~d~~~~vpi~aY~v-SgeY~~~r~Aa~~--------------~~~n~-~----- 266 (300)
+++|||+++--|- . .+.+.+.++...-.++||..==. -.-|.+++.-.+. .+-+. +
T Consensus 173 ~~aGA~~~iTQ~~Fd~~~~~~f~~~~~~~Gi~vPIi~GI~pi~s~~~~~~~~~~~Gv~vP~~l~~~l~~~~d~~~~~~~~ 252 (296)
T PRK09432 173 VDAGANRAITQFFFDVESYLRFRDRCVSAGIDVEIVPGILPVSNFKQLKKFADMTNVRIPAWMAKMFDGLDDDAETRKLV 252 (296)
T ss_pred HHcCCCeeecccccchHHHHHHHHHHHHcCCCCCEEeeccccCCHHHHHHHHHccCCCCCHHHHHHHHhcCCCHHHHHHH
Confidence 7899999977775 2 25666666655544677765311 1122222222211 12122 1
Q ss_pred --HHHHHHHHHHHHcCCCEEEecc
Q psy15126 267 --RALMETLTCLRRGGADVIISYY 288 (300)
Q Consensus 267 --eal~E~~~~~~r~GAD~Ii~y~ 288 (300)
+.-.|...+++++|++-|=.|.
T Consensus 253 Gi~~a~e~i~~L~~~gv~GvH~yt 276 (296)
T PRK09432 253 GASIAMDMVKILSREGVKDFHFYT 276 (296)
T ss_pred HHHHHHHHHHHHHHCCCCEEEEec
Confidence 2346777787778999776664
No 384
>PLN02765 pyruvate kinase
Probab=25.83 E-value=8.2e+02 Score=25.99 Aligned_cols=118 Identities=16% Similarity=0.116 Sum_probs=78.9
Q ss_pred HHHcCCCccccCCCCc-chHHHHHHHHhhCCCCCCcccccchhhhhcccchhhhhhhcCCCCCCCcceeeCCCCCCceEE
Q psy15126 74 FSDAGAHIVAPSDMMD-NRIHAIKQSLFTSRQSSTTGLLSYSAKFCSAFYGPFREAAGSAPTFGDRSCYQLPCGSKGLAI 152 (300)
Q Consensus 74 ~A~aGad~vAPSdmMD-grv~air~aLd~~g~~~~v~ImsysaK~aS~~YGPfRda~gS~~~~gdr~~yQ~~~~~~~~ai 152 (300)
..+.|+|.||.|--=. .-|..+|+.|.+.|. .++.|+
T Consensus 216 ~~~~~vD~ia~SFVr~a~DI~~~r~~l~~~g~-~~~~Ii----------------------------------------- 253 (526)
T PLN02765 216 GVPNKIDFLSLSYTRHAEDVREAREFLSSLGL-SQTQIF----------------------------------------- 253 (526)
T ss_pred HHHcCCCEEEECCCCCHHHHHHHHHHHHhcCC-CCCcEE-----------------------------------------
Confidence 3478999999976543 347888999988776 344444
Q ss_pred EEeecccCCCCCCccccccCCCcccchHhHHHHHHHHHhhhcccccCCCCCccccchhhhcCCceeeccCcch-------
Q psy15126 153 RAAVCLCGYTSHGHCAIFNEDGSIHYEKTLKRLADISKAFSDAVYVPNHNTDRFQARDVSQGADFLMVKPALP------- 225 (300)
Q Consensus 153 ~~dvclc~yt~hGHcgi~~~~g~i~nd~tl~~l~~~a~~~a~~~~~~~~n~~~~~~~Da~~GADivmVkPsmm------- 225 (300)
+ +|++-+-++.|-+|. +-+|-|||+=+..
T Consensus 254 -a--------------------KIE~~~av~nl~eIi-----------------------~~sDgIMVARGDLGvEip~e 289 (526)
T PLN02765 254 -A--------------------KIENVEGLTHFDEIL-----------------------QEADGIILSRGNLGIDLPPE 289 (526)
T ss_pred -E--------------------EECCHHHHHHHHHHH-----------------------HhcCEEEEecCccccccCHH
Confidence 2 577888888877773 3369999997732
Q ss_pred -----HHHHHHHHHhhCCCCCEEeEecccccHHHHHHHhCCCCCHHHHHHHHHHHHHHcCCCEEEec
Q psy15126 226 -----YLDIISEVKSRHPAYPLFVYQVSGEYAMLAFAAQAGALDLKRALMETLTCLRRGGADVIISY 287 (300)
Q Consensus 226 -----~ld~Ir~~~d~~~~vpi~aY~vSgeY~~~r~Aa~~~~~n~~eal~E~~~~~~r~GAD~Ii~y 287 (300)
+=.+|+..... ..|+++=|. .-+|. .++...|.=+-.+...+ -.|+|.||..
T Consensus 290 ~vp~~QK~iI~~c~~~--gKPVI~TQm--LeSMi-----~np~PTRAEvsDVaNAV-~DGaDavMLS 346 (526)
T PLN02765 290 KVFLFQKAALYKCNMA--GKPAVVTRV--VDSMT-----DNLRPTRAEATDVANAV-LDGADAILLG 346 (526)
T ss_pred HhHHHHHHHHHHHHHh--CCCeEEehh--hhHHh-----hCCCCChhhHHHHHHHH-HhCCCEEEec
Confidence 34556666553 688887444 33333 24566665566777777 4899999975
No 385
>PRK07896 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=25.81 E-value=2.8e+02 Score=26.96 Aligned_cols=65 Identities=20% Similarity=0.263 Sum_probs=37.6
Q ss_pred CCCCccccchhhhcCCceeeccCcchHHHHHHHHHhh----CCCCCEEeEecccccHHHHHHHhCCCCCHHHHHHHHHHH
Q psy15126 200 NHNTDRFQARDVSQGADFLMVKPALPYLDIISEVKSR----HPAYPLFVYQVSGEYAMLAFAAQAGALDLKRALMETLTC 275 (300)
Q Consensus 200 ~~n~~~~~~~Da~~GADivmVkPsmm~ld~Ir~~~d~----~~~vpi~aY~vSgeY~~~r~Aa~~~~~n~~eal~E~~~~ 275 (300)
..|.+...+. +++|||+||.- -|-.+-++++.+. ++++.|.+ | |-+|. |.+..
T Consensus 206 v~tl~ea~ea-l~~gaDiI~LD--nm~~e~vk~av~~~~~~~~~v~iea---S------------GGI~~-----~ni~~ 262 (289)
T PRK07896 206 VDSLEQLDEV-LAEGAELVLLD--NFPVWQTQEAVQRRDARAPTVLLES---S------------GGLTL-----DTAAA 262 (289)
T ss_pred cCCHHHHHHH-HHcCCCEEEeC--CCCHHHHHHHHHHHhccCCCEEEEE---E------------CCCCH-----HHHHH
Confidence 3444433332 68999999765 2345555555433 45554433 3 34565 34445
Q ss_pred HHHcCCCEEEec
Q psy15126 276 LRRGGADVIISY 287 (300)
Q Consensus 276 ~~r~GAD~Ii~y 287 (300)
+...|+|+|.+-
T Consensus 263 yA~tGvD~Is~g 274 (289)
T PRK07896 263 YAETGVDYLAVG 274 (289)
T ss_pred HHhcCCCEEEeC
Confidence 667899998764
No 386
>TIGR02841 spore_YyaC putative sporulation protein YyaC. A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, also called YyaC, is a member of that panel and is otherwise uncharacterized. The second round of PSI-BLAST shows many similarities to the germination protease GPR, which is found in exactly the same set of organisms and has a known role in the sporulation/germination process.
Probab=25.58 E-value=96 Score=27.59 Aligned_cols=31 Identities=39% Similarity=0.641 Sum_probs=25.9
Q ss_pred HHHHHHHHHHhCCC-cEEEeeecCCCCCCCCc
Q psy15126 18 LFQVIPMIRKQFPS-LTIACDVCLCGYTSHGH 48 (300)
Q Consensus 18 ~~~~i~~ik~~~p~-l~i~~Dvclc~yt~hGH 48 (300)
+.+.++.|++++|+ .+|+-|.||-.-.+-|+
T Consensus 49 L~e~l~~I~~~~~~~~iIAIDAcLG~~~~vG~ 80 (140)
T TIGR02841 49 LEEKLKIIKKKHPNPFIIAIDACLGRTKSVGH 80 (140)
T ss_pred HHHHHHHHHHhCCCCeEEEEECccCCcccccE
Confidence 56789999999998 88888999977666655
No 387
>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed
Probab=25.57 E-value=2.6e+02 Score=28.46 Aligned_cols=59 Identities=20% Similarity=0.314 Sum_probs=38.2
Q ss_pred hhcCCceeec--cCc------------chHHHHHHHHHhh--CCCCCEEeEecccccHHHHHHHhCCCCCHHHHHHHHHH
Q psy15126 211 VSQGADFLMV--KPA------------LPYLDIISEVKSR--HPAYPLFVYQVSGEYAMLAFAAQAGALDLKRALMETLT 274 (300)
Q Consensus 211 a~~GADivmV--kPs------------mm~ld~Ir~~~d~--~~~vpi~aY~vSgeY~~~r~Aa~~~~~n~~eal~E~~~ 274 (300)
+++|||+|-| .|. .+.+..+.++.+. -.++||++= =|..+. .++.+
T Consensus 287 ~~aGad~i~vg~g~gs~~~~r~~~~~g~p~~~~~~~~~~~~~~~~~~viad--------------GGi~~~----~di~k 348 (486)
T PRK05567 287 IEAGADAVKVGIGPGSICTTRIVAGVGVPQITAIADAAEAAKKYGIPVIAD--------------GGIRYS----GDIAK 348 (486)
T ss_pred HHcCCCEEEECCCCCccccceeecCCCcCHHHHHHHHHHHhccCCCeEEEc--------------CCCCCH----HHHHH
Confidence 5689999965 343 2466777666553 126787762 233444 45667
Q ss_pred HHHHcCCCEEEecc
Q psy15126 275 CLRRGGADVIISYY 288 (300)
Q Consensus 275 ~~~r~GAD~Ii~y~ 288 (300)
.+ ..|||.+|+--
T Consensus 349 Al-a~GA~~v~~G~ 361 (486)
T PRK05567 349 AL-AAGASAVMLGS 361 (486)
T ss_pred HH-HhCCCEEEECc
Confidence 88 69999999743
No 388
>cd08213 RuBisCO_large_III Ribulose bisphosphate carboxylase large chain, Form III. Ribulose bisphosphate carboxylase (Rubisco) plays an important role in the Calvin reductive pentose phosphate pathway. It catalyzes the primary CO2 fixation step. Rubisco is activated by carbamylation of an active site lysine, stabilized by a divalent cation, which then catalyzes the proton abstraction from the substrate ribulose 1,5 bisphosphate (RuBP) and leads to the formation of two molecules of 3-phosphoglycerate. Members of the Rubisco family can be divided into 4 subgroups, Form I-IV , which differ in their taxonomic distribution and subunit composition. Form III is only found in archaea and forms large subunit oligomers (dimers or decamers) that do not include small subunits.
Probab=25.52 E-value=4.8e+02 Score=26.68 Aligned_cols=83 Identities=11% Similarity=0.153 Sum_probs=48.6
Q ss_pred hHHHHHHHHHhhhcccccCCCCCccccchhhhcCCceeeccCc--------ch---HHHHHHHHH----hhCCCCCEEeE
Q psy15126 181 TLKRLADISKAFSDAVYVPNHNTDRFQARDVSQGADFLMVKPA--------LP---YLDIISEVK----SRHPAYPLFVY 245 (300)
Q Consensus 181 tl~~l~~~a~~~a~~~~~~~~n~~~~~~~Da~~GADivmVkPs--------mm---~ld~Ir~~~----d~~~~vpi~aY 245 (300)
|.+.+++++..+ +.-|.|+| |=. ++ ++..+.++. ++.-..-+.+-
T Consensus 145 sp~~~a~~~y~~------------------~~GGvD~i--KDDE~l~~q~~~p~~~Rv~~~~~a~~~a~~eTG~~~~y~~ 204 (412)
T cd08213 145 SPEEHAEVAYEA------------------LVGGVDLV--KDDENLTSQPFNRFEERAKESLKARDKAEAETGERKAYLA 204 (412)
T ss_pred CHHHHHHHHHHH------------------HhcCCccc--ccCccCCCCCCCCHHHHHHHHHHHHHHHHHhhCCcceEEE
Confidence 567888888887 68999998 732 23 444444443 33333445555
Q ss_pred ecccccHHHHHHHhCCCCCHHHHHHHHHHHHHHcCCCEEEecc---hHHHHHHHhh
Q psy15126 246 QVSGEYAMLAFAAQAGALDLKRALMETLTCLRRGGADVIISYY---TPRVLEWLRE 298 (300)
Q Consensus 246 ~vSgeY~~~r~Aa~~~~~n~~eal~E~~~~~~r~GAD~Ii~y~---A~~~ld~l~~ 298 (300)
++|+.. +-++|-..-.+++|++++|+-+ +...++.|++
T Consensus 205 NiT~~~---------------~em~~ra~~a~e~G~~~~mv~~~~~G~~~l~~l~~ 245 (412)
T cd08213 205 NITAPV---------------REMERRAELVADLGGKYVMIDVVVAGWSALQYLRD 245 (412)
T ss_pred EecCCH---------------HHHHHHHHHHHHhCCCeEEeeccccChHHHHHHHH
Confidence 555541 2334444444578999998765 3445555554
No 389
>cd08207 RLP_NonPhot Ribulose bisphosphate carboxylase like proteins from nonphototrophic bacteria. Ribulose bisphosphate carboxylase (Rubisco) plays an important role in the Calvin reductive pentose phosphate pathway. It catalyzes the primary CO2 fixation step. Rubisco is activated by carbamylation of an active site lysine, stabilized by a divalent cation, which then catalyzes the proton abstraction from the substrate ribulose 1,5 bisphosphate (RuBP) and leads to the formation of two molecules of 3-phosphoglycerate. Members of the Rubisco family can be divided into 4 subgroups, Form I-IV, which differ in their taxonomic distribution and subunit composition. Form I-III have Rubisco activity, while Form IV, also called Rubisco-like proteins (RLP), are missing critical active site residues and therefore do not catalyze CO2 fixation. They are believed to utilize a related enzymatic mechanism, but have divergent functions. The specific function of this subgroup is unknown.
Probab=25.28 E-value=5.1e+02 Score=26.41 Aligned_cols=83 Identities=16% Similarity=0.299 Sum_probs=49.3
Q ss_pred hHHHHHHHHHhhhcccccCCCCCccccchhhhcCCceeeccCc--------ch---HHHHHHHHH----hhCCCCCEEeE
Q psy15126 181 TLKRLADISKAFSDAVYVPNHNTDRFQARDVSQGADFLMVKPA--------LP---YLDIISEVK----SRHPAYPLFVY 245 (300)
Q Consensus 181 tl~~l~~~a~~~a~~~~~~~~n~~~~~~~Da~~GADivmVkPs--------mm---~ld~Ir~~~----d~~~~vpi~aY 245 (300)
|-+.+++++..+ +..|.|+| |=. ++ ++..+.++. ++.-..-+.+-
T Consensus 157 sp~~~a~~~y~~------------------~~GGvD~I--KDDE~l~~q~~~p~~eRv~~~~~a~~~a~~eTG~~~~y~~ 216 (406)
T cd08207 157 TPEETAALVRQL------------------AAAGIDFI--KDDELLANPPYSPLDERVRAVMRVINDHAQRTGRKVMYAF 216 (406)
T ss_pred CHHHHHHHHHHH------------------HhCCCCcc--cccccCCCCCCCcHHHHHHHHHHHHHHHHHhhCCcceEEE
Confidence 567888888887 68999998 633 22 444444443 33323344455
Q ss_pred ecccccHHHHHHHhCCCCCHHHHHHHHHHHHHHcCCCEEEecc---hHHHHHHHhh
Q psy15126 246 QVSGEYAMLAFAAQAGALDLKRALMETLTCLRRGGADVIISYY---TPRVLEWLRE 298 (300)
Q Consensus 246 ~vSgeY~~~r~Aa~~~~~n~~eal~E~~~~~~r~GAD~Ii~y~---A~~~ld~l~~ 298 (300)
++|+. . +-++|-..-.+++|++.+|+-+ +...++.|++
T Consensus 217 NiT~~--------------~-~em~~ra~~~~~~G~~~~mv~~~~~G~~~l~~l~~ 257 (406)
T cd08207 217 NITDD--------------I-DEMRRNHDLVVEAGGTCVMVSLNSVGLSGLAALRR 257 (406)
T ss_pred ecCCC--------------H-HHHHHHHHHHHHhCCCeEEEeccccchHHHHHHHh
Confidence 55543 1 2344444455578999999865 4455666654
No 390
>PRK09140 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; Reviewed
Probab=25.17 E-value=5.2e+02 Score=23.44 Aligned_cols=67 Identities=16% Similarity=0.176 Sum_probs=42.1
Q ss_pred hhcCCceeeccCcch-HHHHHHHHHhhCCC-CCEEeEecccccHHHHHHHhCCCCCHHHHHHHHHHHHHHcCCCEEEec-
Q psy15126 211 VSQGADFLMVKPALP-YLDIISEVKSRHPA-YPLFVYQVSGEYAMLAFAAQAGALDLKRALMETLTCLRRGGADVIISY- 287 (300)
Q Consensus 211 a~~GADivmVkPsmm-~ld~Ir~~~d~~~~-vpi~aY~vSgeY~~~r~Aa~~~~~n~~eal~E~~~~~~r~GAD~Ii~y- 287 (300)
++.|..+|=|-=..+ -.+.|++++++|++ +.|-+=.| ++.+ .+...+++|||+|++-
T Consensus 32 ~~gGi~~iEvt~~~~~~~~~i~~l~~~~~~~~~iGaGTV---------------~~~~-----~~~~a~~aGA~fivsp~ 91 (206)
T PRK09140 32 IEAGFRAIEIPLNSPDPFDSIAALVKALGDRALIGAGTV---------------LSPE-----QVDRLADAGGRLIVTPN 91 (206)
T ss_pred HHCCCCEEEEeCCCccHHHHHHHHHHHcCCCcEEeEEec---------------CCHH-----HHHHHHHcCCCEEECCC
Confidence 788999884432222 57789999988864 56666655 3433 2233447899998885
Q ss_pred chHHHHHHHh
Q psy15126 288 YTPRVLEWLR 297 (300)
Q Consensus 288 ~A~~~ld~l~ 297 (300)
.-+++.++.+
T Consensus 92 ~~~~v~~~~~ 101 (206)
T PRK09140 92 TDPEVIRRAV 101 (206)
T ss_pred CCHHHHHHHH
Confidence 3445555554
No 391
>TIGR00730 conserved hypothetical protein, DprA/Smf-related, family 2. This model represents one branch of a subfamily of proteins of unknown function. Both PSI-BLAST and weak hits by this model show a low level of similarity to and suggest an evolutionary relationship of the subfamily to the DprA/Smf family of DNA-processing proteins involved in chromosomal transformation with foreign DNA. Both Aquifex aeolicus and Mycobacterium leprae have one member in each of two branches of this subfamily, suggesting that the branches may have distinct functions.
Probab=25.13 E-value=4.8e+02 Score=23.26 Aligned_cols=54 Identities=22% Similarity=0.287 Sum_probs=40.2
Q ss_pred cCCceeeccCcch-HHHHHHHHHhh----CCCCCEEeEecccccHHHHH----HHhCCCCCHH
Q psy15126 213 QGADFLMVKPALP-YLDIISEVKSR----HPAYPLFVYQVSGEYAMLAF----AAQAGALDLK 266 (300)
Q Consensus 213 ~GADivmVkPsmm-~ld~Ir~~~d~----~~~vpi~aY~vSgeY~~~r~----Aa~~~~~n~~ 266 (300)
+-+|.+++-|+-. .|+-+-+++.- ..+.||..|...|+|.++.. .++.|.++.+
T Consensus 95 ~~sda~I~lPGG~GTL~El~e~~~~~qlg~~~kPiil~n~~g~~~~l~~~l~~~~~~gfi~~~ 157 (178)
T TIGR00730 95 ELADAFIAMPGGFGTLEELFEVLTWAQLGIHQKPIILFNVNGHFDGLVEWLKYSIQEGFISES 157 (178)
T ss_pred HhCCEEEEcCCCcchHHHHHHHHHHHHcCCCCCCEEEECCcchHHHHHHHHHHHHHCCCCCHH
Confidence 4579999999855 78887777642 23689999999999998765 4556766653
No 392
>COG0157 NadC Nicotinate-nucleotide pyrophosphorylase [Coenzyme metabolism]
Probab=24.79 E-value=1.3e+02 Score=29.51 Aligned_cols=50 Identities=22% Similarity=0.364 Sum_probs=0.0
Q ss_pred ceeeccCc-chHHH----HHHHHHhhCCCCCEEeEecccccHHHHHHHhCCCCCHHHHHHHHHHHHHHcCCCEEE
Q psy15126 216 DFLMVKPA-LPYLD----IISEVKSRHPAYPLFVYQVSGEYAMLAFAAQAGALDLKRALMETLTCLRRGGADVII 285 (300)
Q Consensus 216 DivmVkPs-mm~ld----~Ir~~~d~~~~vpi~aY~vSgeY~~~r~Aa~~~~~n~~eal~E~~~~~~r~GAD~Ii 285 (300)
|.||+|=- ...++ +|++++...|.++-.---| |-+-|....+ ++|||+||
T Consensus 159 DavliKDNHia~~g~i~~Av~~aR~~~~~~~kIEVEv-------------------esle~~~eAl-~agaDiIm 213 (280)
T COG0157 159 DAVLIKDNHIAAAGSITEAVRRARAAAPFTKKIEVEV-------------------ESLEEAEEAL-EAGADIIM 213 (280)
T ss_pred ceEEehhhHHHHhccHHHHHHHHHHhCCCCceEEEEc-------------------CCHHHHHHHH-HcCCCEEE
No 393
>PRK10161 transcriptional regulator PhoB; Provisional
Probab=24.78 E-value=3.1e+02 Score=22.97 Aligned_cols=49 Identities=18% Similarity=0.295 Sum_probs=32.4
Q ss_pred cCCceeeccCcch---HHHHHHHHHhh--CCCCCEEeEecccccHHHHHHHhCC
Q psy15126 213 QGADFLMVKPALP---YLDIISEVKSR--HPAYPLFVYQVSGEYAMLAFAAQAG 261 (300)
Q Consensus 213 ~GADivmVkPsmm---~ld~Ir~~~d~--~~~vpi~aY~vSgeY~~~r~Aa~~~ 261 (300)
...|+|++-..++ -++.++.++.. .+.+|++..+..........+.+.|
T Consensus 45 ~~~dlvild~~l~~~~g~~~~~~l~~~~~~~~~pvi~ls~~~~~~~~~~~~~~G 98 (229)
T PRK10161 45 PWPDLILLDWMLPGGSGIQFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETG 98 (229)
T ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHhccccCCCCEEEEECCCCHHHHHHHHHcC
Confidence 3469998876544 57788887764 4689999986544444445555544
No 394
>PRK10550 tRNA-dihydrouridine synthase C; Provisional
Probab=24.76 E-value=4e+02 Score=25.69 Aligned_cols=72 Identities=18% Similarity=0.231 Sum_probs=0.0
Q ss_pred CcccchHhHHHHHHHHHhhhcccccCCCCCccccchhhhcCCceeeccCcch---------HHHHHHHHHhhCCCCCEEe
Q psy15126 174 GSIHYEKTLKRLADISKAFSDAVYVPNHNTDRFQARDVSQGADFLMVKPALP---------YLDIISEVKSRHPAYPLFV 244 (300)
Q Consensus 174 g~i~nd~tl~~l~~~a~~~a~~~~~~~~n~~~~~~~Da~~GADivmVkPsmm---------~ld~Ir~~~d~~~~vpi~a 244 (300)
|.-+.+++++..... .++|+|+|.|-|-.. ..+.|+++++.. ++||++
T Consensus 143 g~~~~~~~~~~a~~l----------------------~~~Gvd~i~Vh~Rt~~~~y~g~~~~~~~i~~ik~~~-~iPVi~ 199 (312)
T PRK10550 143 GWDSGERKFEIADAV----------------------QQAGATELVVHGRTKEDGYRAEHINWQAIGEIRQRL-TIPVIA 199 (312)
T ss_pred CCCCchHHHHHHHHH----------------------HhcCCCEEEECCCCCccCCCCCcccHHHHHHHHhhc-CCcEEE
Q ss_pred EecccccHHHHHHHhCCCCCHHHHHHHHHHHHHHcCCCEEEe
Q psy15126 245 YQVSGEYAMLAFAAQAGALDLKRALMETLTCLRRGGADVIIS 286 (300)
Q Consensus 245 Y~vSgeY~~~r~Aa~~~~~n~~eal~E~~~~~~r~GAD~Ii~ 286 (300)
= |-+..-+-..+.+ .+.|||.||+
T Consensus 200 n---------------GdI~t~~da~~~l---~~~g~DgVmi 223 (312)
T PRK10550 200 N---------------GEIWDWQSAQQCM---AITGCDAVMI 223 (312)
T ss_pred e---------------CCcCCHHHHHHHH---hccCCCEEEE
No 395
>cd02932 OYE_YqiM_FMN Old yellow enzyme (OYE) YqjM-like FMN binding domain. YqjM is involved in the oxidative stress response of Bacillus subtilis. Like the other OYE members, each monomer of YqjM contains FMN as a non-covalently bound cofactor and uses NADPH as a reducing agent. The YqjM enzyme exists as a homotetramer that is assembled as a dimer of catalytically dependent dimers, while other OYE members exist only as monomers or dimers. Moreover, the protein displays a shared active site architecture where an arginine finger at the COOH terminus of one monomer extends into the active site of the adjacent monomer and is directly involved in substrate recognition. Another remarkable difference in the binding of the ligand in YqjM is represented by the contribution of the NH2-terminal tyrosine instead of a COOH-terminal tyrosine in OYE and its homologs.
Probab=24.68 E-value=1.8e+02 Score=27.72 Aligned_cols=67 Identities=19% Similarity=0.368 Sum_probs=45.3
Q ss_pred CcccccCCCCCChHHHHHHHHHHhCC-CcEEEeeecCCCCCCCCcceeeCCCCceecHHhHHHHHHHHHHHHHcCCCccc
Q psy15126 5 DETASFADTPDNPLFQVIPMIRKQFP-SLTIACDVCLCGYTSHGHCAIFNEDGSIHYEKTLKRLADISKAFSDAGAHIVA 83 (300)
Q Consensus 5 d~~~s~a~~~~~~~~~~i~~ik~~~p-~l~i~~Dvclc~yt~hGHcgi~~~~g~i~nd~Tl~~l~~~A~~~A~aGad~vA 83 (300)
|+.|..-.+.-..+.+.++.||+.++ +..|..++..-++. +.| . |++...+.+..+.++|+|.|.
T Consensus 194 D~yGgsl~nr~rf~~eiv~aIR~~vG~d~~v~vri~~~~~~---------~~g-~----~~~e~~~ia~~Le~~gvd~ie 259 (336)
T cd02932 194 DEYGGSLENRMRFLLEVVDAVRAVWPEDKPLFVRISATDWV---------EGG-W----DLEDSVELAKALKELGVDLID 259 (336)
T ss_pred cccCCCHHHHhHHHHHHHHHHHHHcCCCceEEEEEcccccC---------CCC-C----CHHHHHHHHHHHHHcCCCEEE
Confidence 44444333444566789999999994 78999998864431 112 2 355667777778889999997
Q ss_pred cC
Q psy15126 84 PS 85 (300)
Q Consensus 84 PS 85 (300)
.|
T Consensus 260 v~ 261 (336)
T cd02932 260 VS 261 (336)
T ss_pred EC
Confidence 65
No 396
>CHL00148 orf27 Ycf27; Reviewed
Probab=24.57 E-value=4.2e+02 Score=22.16 Aligned_cols=49 Identities=12% Similarity=0.328 Sum_probs=34.2
Q ss_pred hcCCceeeccCcch---HHHHHHHHHhhCCCCCEEeEecccccHHHHHHHhCC
Q psy15126 212 SQGADFLMVKPALP---YLDIISEVKSRHPAYPLFVYQVSGEYAMLAFAAQAG 261 (300)
Q Consensus 212 ~~GADivmVkPsmm---~ld~Ir~~~d~~~~vpi~aY~vSgeY~~~r~Aa~~~ 261 (300)
+...|+|++-..++ -++.++.++.. +++|++..+..........+.+.|
T Consensus 48 ~~~~d~illd~~~~~~~g~~~~~~l~~~-~~~~ii~ls~~~~~~~~~~~~~~G 99 (240)
T CHL00148 48 KEQPDLVILDVMMPKLDGYGVCQEIRKE-SDVPIIMLTALGDVSDRITGLELG 99 (240)
T ss_pred hcCCCEEEEeCCCCCCCHHHHHHHHHhc-CCCcEEEEECCCCHHhHHHHHHCC
Confidence 34579998875544 57777777765 689999887666666656666655
No 397
>TIGR03884 sel_bind_Methan selenium-binding protein. This model describes a homopentameric selenium-binding protein with a suggested role in selenium transport and delivery to selenophosphate synthase, the SelD protein. This protein family is closely related to pfam01906, but is shorter because of several deleted regions. It is restricted to the archaeal genus Methanococcus.
Probab=24.40 E-value=1e+02 Score=24.78 Aligned_cols=22 Identities=9% Similarity=0.135 Sum_probs=20.6
Q ss_pred CHHHHHHHHHHHHHHcCCCEEE
Q psy15126 264 DLKRALMETLTCLRRGGADVII 285 (300)
Q Consensus 264 n~~eal~E~~~~~~r~GAD~Ii 285 (300)
|.++|+.|....-++-|||.|+
T Consensus 26 d~d~Al~eM~e~A~~lGAnAVV 47 (74)
T TIGR03884 26 NVDEIVENLREKVKAKGGMGLI 47 (74)
T ss_pred CHHHHHHHHHHHHHHcCCCEEE
Confidence 8899999999999999999986
No 398
>PRK08072 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=24.27 E-value=3.8e+02 Score=25.75 Aligned_cols=68 Identities=22% Similarity=0.282 Sum_probs=40.6
Q ss_pred cCCCCCccccchhhhcCCceeeccCcchHHHHHHHHHhhCCCCCEEeEecccccHHHHHHHhCCCCCHHHHHHHHHHHHH
Q psy15126 198 VPNHNTDRFQARDVSQGADFLMVKPALPYLDIISEVKSRHPAYPLFVYQVSGEYAMLAFAAQAGALDLKRALMETLTCLR 277 (300)
Q Consensus 198 ~~~~n~~~~~~~Da~~GADivmVkPsmm~ld~Ir~~~d~~~~vpi~aY~vSgeY~~~r~Aa~~~~~n~~eal~E~~~~~~ 277 (300)
+-.||....... +++|||+|++.+ +-++.++++.+.. +.|+.... .|-+|.+ -+..+.
T Consensus 193 vsv~tleea~~A-~~~gaDyI~lD~--~~~e~l~~~~~~~-~~~i~i~A-------------iGGIt~~-----ni~~~a 250 (277)
T PRK08072 193 VETETEEQVREA-VAAGADIIMFDN--RTPDEIREFVKLV-PSAIVTEA-------------SGGITLE-----NLPAYG 250 (277)
T ss_pred EEeCCHHHHHHH-HHcCCCEEEECC--CCHHHHHHHHHhc-CCCceEEE-------------ECCCCHH-----HHHHHH
Confidence 444554443332 579999999965 5567777776653 23333221 2445653 344566
Q ss_pred HcCCCEEEec
Q psy15126 278 RGGADVIISY 287 (300)
Q Consensus 278 r~GAD~Ii~y 287 (300)
+.|+|.|-+-
T Consensus 251 ~~Gvd~IAvg 260 (277)
T PRK08072 251 GTGVDYISLG 260 (277)
T ss_pred HcCCCEEEEC
Confidence 7899998764
No 399
>TIGR00737 nifR3_yhdG putative TIM-barrel protein, nifR3 family. Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.
Probab=24.01 E-value=3.4e+02 Score=25.69 Aligned_cols=60 Identities=20% Similarity=0.212 Sum_probs=36.3
Q ss_pred hhcCCceeeccCc--------chHHHHHHHHHhhCCCCCEEeEecccccHHHHHHHhCCCCCHHHHHHHHHHHHHHcCCC
Q psy15126 211 VSQGADFLMVKPA--------LPYLDIISEVKSRHPAYPLFVYQVSGEYAMLAFAAQAGALDLKRALMETLTCLRRGGAD 282 (300)
Q Consensus 211 a~~GADivmVkPs--------mm~ld~Ir~~~d~~~~vpi~aY~vSgeY~~~r~Aa~~~~~n~~eal~E~~~~~~r~GAD 282 (300)
.+.|+|.|.|-+- ...++.++++++.. ++||++= | |..+.++ +.+.+ +..|||
T Consensus 157 ~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~-~ipvi~n---G-----------gI~~~~d-a~~~l---~~~gad 217 (319)
T TIGR00737 157 EDAGAQAVTLHGRTRAQGYSGEANWDIIARVKQAV-RIPVIGN---G-----------DIFSPED-AKAML---ETTGCD 217 (319)
T ss_pred HHhCCCEEEEEcccccccCCCchhHHHHHHHHHcC-CCcEEEe---C-----------CCCCHHH-HHHHH---HhhCCC
Confidence 4678888876431 12588899998875 5888753 2 2333322 23333 246899
Q ss_pred EEEecch
Q psy15126 283 VIISYYT 289 (300)
Q Consensus 283 ~Ii~y~A 289 (300)
.||+--+
T Consensus 218 ~VmigR~ 224 (319)
T TIGR00737 218 GVMIGRG 224 (319)
T ss_pred EEEEChh
Confidence 9887543
No 400
>TIGR00423 radical SAM domain protein, CofH subfamily. This protein family includes the CofH protein of coenzyme F(420) biosynthesis from Methanocaldococcus jannaschii, but appears to hit genomes more broadly than just the subset that make coenzyme F(420), so that narrower group is being built as a separate family.
Probab=23.97 E-value=3.7e+02 Score=25.32 Aligned_cols=51 Identities=24% Similarity=0.387 Sum_probs=34.1
Q ss_pred HHHHHHHHHhhCCCCCEEeEecccccHHHHHHHhCCCCCHHHHHHHHHHHHHHcCCCEE
Q psy15126 226 YLDIISEVKSRHPAYPLFVYQVSGEYAMLAFAAQAGALDLKRALMETLTCLRRGGADVI 284 (300)
Q Consensus 226 ~ld~Ir~~~d~~~~vpi~aY~vSgeY~~~r~Aa~~~~~n~~eal~E~~~~~~r~GAD~I 284 (300)
+.++++.++++++++.+.+++. +|.--+ +...|..+ .|.+..+|++|.|.+
T Consensus 71 ~~~i~~~Ik~~~~~i~~~~~s~-~e~~~~--~~~~g~~~-----~e~l~~LkeAGl~~i 121 (309)
T TIGR00423 71 YEELFRAIKQEFPDVHIHAFSP-MEVYFL--AKNEGLSI-----EEVLKRLKKAGLDSM 121 (309)
T ss_pred HHHHHHHHHHHCCCceEEecCH-HHHHHH--HHHcCCCH-----HHHHHHHHHcCCCcC
Confidence 6899999999988888887742 222111 11334322 577888888999877
No 401
>PRK10200 putative racemase; Provisional
Probab=23.85 E-value=1.5e+02 Score=27.04 Aligned_cols=67 Identities=21% Similarity=0.182 Sum_probs=49.4
Q ss_pred HHhHHHHHHHHHHHHHcCCCcccc----------------CCCCcchHHHHHHHHhhCCCCCCcccccchhhhhcccch-
Q psy15126 61 EKTLKRLADISKAFSDAGAHIVAP----------------SDMMDNRIHAIKQSLFTSRQSSTTGLLSYSAKFCSAFYG- 123 (300)
Q Consensus 61 d~Tl~~l~~~A~~~A~aGad~vAP----------------SdmMDgrv~air~aLd~~g~~~~v~ImsysaK~aS~~YG- 123 (300)
+.-...|++.+..+.++|++.|+. ...+=+-+..+.+++...|. .+|+||+=.+-..|.+|.
T Consensus 58 ~~~~~~l~~~~~~L~~~g~~~iviaCNTah~~~~~l~~~~~iPii~ii~~~~~~~~~~~~-~~VglLaT~~Ti~s~~Y~~ 136 (230)
T PRK10200 58 DKTGDILAEAALGLQRAGAEGIVLCTNTMHKVADAIESRCSLPFLHIADATGRAITGAGM-TRVALLGTRYTMEQDFYRG 136 (230)
T ss_pred chHHHHHHHHHHHHHHcCCCEEEECCchHHHHHHHHHHhCCCCEeehHHHHHHHHHHcCC-CeEEEeccHHHHHHhHHHH
Confidence 346788999999999999998865 11122335566667777788 799999999999999997
Q ss_pred hhhhh
Q psy15126 124 PFREA 128 (300)
Q Consensus 124 PfRda 128 (300)
.+.+.
T Consensus 137 ~l~~~ 141 (230)
T PRK10200 137 RLTEQ 141 (230)
T ss_pred HHHHh
Confidence 33433
No 402
>PRK12331 oxaloacetate decarboxylase; Provisional
Probab=23.80 E-value=2e+02 Score=29.47 Aligned_cols=55 Identities=16% Similarity=0.157 Sum_probs=40.8
Q ss_pred CCCEEeEec-ccccHHHHHHH-hCCCCCHHHHHHHHHHHHHHcCCCEEEecchHHHH
Q psy15126 239 AYPLFVYQV-SGEYAMLAFAA-QAGALDLKRALMETLTCLRRGGADVIISYYTPRVL 293 (300)
Q Consensus 239 ~vpi~aY~v-SgeY~~~r~Aa-~~~~~n~~eal~E~~~~~~r~GAD~Ii~y~A~~~l 293 (300)
+.-+.-||+ -|-|+-++.=+ ++|..++=+-++|-.-..++..-+.++|-|..++.
T Consensus 291 ~~~v~~~~~PGG~~snl~~ql~~~g~~~~~~~v~~e~~~v~~~lG~~~~VTP~Sq~v 347 (448)
T PRK12331 291 EPKTLIYQVPGGMLSNLLSQLKEQGAEDKYEEVLKEVPKVRADLGYPPLVTPLSQMV 347 (448)
T ss_pred CcCeeecCCCcchHhHHHHHHHHCCcHhHHHHHHHHHHHHHHHcCCCCeeCChhHHH
Confidence 566788888 77777666543 67888886666666666767888999999977654
No 403
>PF04551 GcpE: GcpE protein; InterPro: IPR004588 This protein previously of unknown biochemical function is essential in Escherichia coli. It has now been characterised as 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase, which converts 2C-methyl-D-erythritol 2,4-cyclodiphosphate (ME-2,4CPP) into 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate in the sixth step of nonmevalonate terpenoid biosynthesis. The family is largely restricted to bacteria, where it is widely but not universally distributed. No homology can be detected between this family and other proteins.; GO: 0046429 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase activity, 0016114 terpenoid biosynthetic process, 0055114 oxidation-reduction process; PDB: 2Y0F_C 3NOY_A.
Probab=23.76 E-value=68 Score=32.41 Aligned_cols=181 Identities=20% Similarity=0.286 Sum_probs=104.8
Q ss_pred HHHHHHHHHHHHHcCCCcccc---CCCCcchHHHHHHHHhhCCCCCCcccccchhhhhcccchhhhhhhcCCCCCCCcce
Q psy15126 64 LKRLADISKAFSDAGAHIVAP---SDMMDNRIHAIKQSLFTSRQSSTTGLLSYSAKFCSAFYGPFREAAGSAPTFGDRSC 140 (300)
Q Consensus 64 l~~l~~~A~~~A~aGad~vAP---SdmMDgrv~air~aLd~~g~~~~v~ImsysaK~aS~~YGPfRda~gS~~~~gdr~~ 140 (300)
++..++|...++++|+++|-- +.---.-+..|++.|++.|. ++++++ =.-|- +|=|+..... =..
T Consensus 30 v~atv~QI~~L~~aGceivRvavp~~~~a~al~~I~~~l~~~g~--~iPlVA------DIHFd-~~lAl~a~~~---v~k 97 (359)
T PF04551_consen 30 VEATVAQIKRLEEAGCEIVRVAVPDMEAAEALKEIKKRLRALGS--PIPLVA------DIHFD-YRLALEAIEA---VDK 97 (359)
T ss_dssp HHHHHHHHHHHHHCT-SEEEEEE-SHHHHHHHHHHHHHHHCTT---SS-EEE------EESTT-CHHHHHHHHC----SE
T ss_pred HHHHHHHHHHHHHcCCCEEEEcCCCHHHHHHHHHHHHhhccCCC--CCCeee------ecCCC-HHHHHHHHHH---hCe
Confidence 556678889999999999865 33334567889999999998 578873 22333 2322222111 113
Q ss_pred eeCCCCCC-------------------------ceEEEEeecccCCCCCCccccccCCCcccch------HhHHHHHHHH
Q psy15126 141 YQLPCGSK-------------------------GLAIRAAVCLCGYTSHGHCAIFNEDGSIHYE------KTLKRLADIS 189 (300)
Q Consensus 141 yQ~~~~~~-------------------------~~ai~~dvclc~yt~hGHcgi~~~~g~i~nd------~tl~~l~~~a 189 (300)
..++|+|- +.+||--| +.|++..+ .|-+.|++-|
T Consensus 98 iRINPGNi~~~~~~~~g~~~~~~~~vv~~ake~~ipIRIGv---------------N~GSL~~~~~~ky~~t~~amvesA 162 (359)
T PF04551_consen 98 IRINPGNIVDEFQEELGSIREKVKEVVEAAKERGIPIRIGV---------------NSGSLEKDILEKYGPTPEAMVESA 162 (359)
T ss_dssp EEE-TTTSS----SS-SS-HHHHHHHHHHHHHHT-EEEEEE---------------EGGGS-HHHHHHHCHHHHHHHHHH
T ss_pred EEECCCcccccccccccchHHHHHHHHHHHHHCCCCEEEec---------------ccccCcHHHHhhccchHHHHHHHH
Confidence 45666665 23444431 12566543 5777888888
Q ss_pred HhhhcccccCCCCCccccchhhhcCCc-ee-eccCcc--hHHHHHHHHHhhCCCCCEEeEec----ccccHHHHHHHh--
Q psy15126 190 KAFSDAVYVPNHNTDRFQARDVSQGAD-FL-MVKPAL--PYLDIISEVKSRHPAYPLFVYQV----SGEYAMLAFAAQ-- 259 (300)
Q Consensus 190 ~~~a~~~~~~~~n~~~~~~~Da~~GAD-iv-mVkPsm--m~ld~Ir~~~d~~~~vpi~aY~v----SgeY~~~r~Aa~-- 259 (300)
+.++ ..=-+.|-| ++ =+|-|. ..+.+-|.+-+++ ++|+-- .+ +++-|.+|.++.
T Consensus 163 ~~~~--------------~~le~~~f~~iviSlKsSdv~~~i~ayr~la~~~-dyPLHL-GvTEAG~~~~g~IkSsigiG 226 (359)
T PF04551_consen 163 LEHV--------------RILEELGFDDIVISLKSSDVPETIEAYRLLAERM-DYPLHL-GVTEAGTGEDGTIKSSIGIG 226 (359)
T ss_dssp HHHH--------------HHHHHCT-GGEEEEEEBSSHHHHHHHHHHHHHH---S-EEE-EBSSEESCHHHHHHHHHHHH
T ss_pred HHHH--------------HHHHHCCCCcEEEEEEeCChHHHHHHHHHHHHhc-CCCeEE-eecCCCCcccchhHHHHHHH
Confidence 8874 222345653 32 245553 3788888888886 688643 44 778899999984
Q ss_pred ----------------CCCCCHHHHHHHHHHHH--HHcCCCEEEecc
Q psy15126 260 ----------------AGALDLKRALMETLTCL--RRGGADVIISYY 288 (300)
Q Consensus 260 ----------------~~~~n~~eal~E~~~~~--~r~GAD~Ii~y~ 288 (300)
.++..+-.+-+|.|+++ ++.|.++| +-|
T Consensus 227 ~LL~~GIGDTIRVSLt~~p~~EV~va~~IL~al~lR~~g~~~I-SCP 272 (359)
T PF04551_consen 227 ALLLDGIGDTIRVSLTGDPVEEVKVAFEILQALGLRKRGPEII-SCP 272 (359)
T ss_dssp HHHHTT--SEEEE-ECSSCCCHHHHHHHHHHHTTSS-SS-EEE-E--
T ss_pred HHHHcCCCCEEEEECCCCchHHHHHHHHHHHHhCcCcCCceee-eCC
Confidence 35777777888888876 23566654 444
No 404
>PRK15394 4-deoxy-4-formamido-L-arabinose-phosphoundecaprenol deformylase ArnD; Provisional
Probab=23.74 E-value=64 Score=31.14 Aligned_cols=88 Identities=17% Similarity=0.163 Sum_probs=47.9
Q ss_pred CCCCCCCcceee--CCCCceecHHhHHHHHHHHHHHHH-cCCCc---cccCCCCcchHHHHHHHHhhCCCCCCcccccch
Q psy15126 41 CGYTSHGHCAIF--NEDGSIHYEKTLKRLADISKAFSD-AGAHI---VAPSDMMDNRIHAIKQSLFTSRQSSTTGLLSYS 114 (300)
Q Consensus 41 c~yt~hGHcgi~--~~~g~i~nd~Tl~~l~~~A~~~A~-aGad~---vAPSdmMDgrv~air~aLd~~g~~~~v~Imsys 114 (300)
.+.-.||+.=.- +.-+....++-.+.+.+....+.+ .|..+ -+|.-.++.++ .+.|.+.||.
T Consensus 101 HEIG~Hg~~H~~wq~~~~~ls~~e~~~eI~ra~~~Le~itG~~p~g~raPgw~~~~~t---l~ll~e~Gf~--------- 168 (296)
T PRK15394 101 HEVGLHAWDHHAWQAWSGVWSRQQLIEQIARGVDALEEIIGQPVTCSAAAGWRADQRV---VEAKEAFGFR--------- 168 (296)
T ss_pred CEehhcccCccchhcccccCCHHHHHHHHHHHHHHHHHHhCCCCCEEeCCCccCCHHH---HHHHHHcCCe---------
Confidence 456667654321 111233334433444333323332 35552 26766666444 6679999993
Q ss_pred hhhhcccch--hhhhhhcCCCCCCCcceeeCCCC
Q psy15126 115 AKFCSAFYG--PFREAAGSAPTFGDRSCYQLPCG 146 (300)
Q Consensus 115 aK~aS~~YG--PfRda~gS~~~~gdr~~yQ~~~~ 146 (300)
|+|+++| ||+-..++.+ -.+.|+|..
T Consensus 169 --Y~Ss~~~d~Py~~~~~~g~----~~~veIP~t 196 (296)
T PRK15394 169 --YNSDCRGTHPFRPLLPDGS----LGTVQIPVT 196 (296)
T ss_pred --eecCCCCCCceeeecCCCc----CCeEEEccc
Confidence 8899999 8876654321 246777755
No 405
>PRK05437 isopentenyl pyrophosphate isomerase; Provisional
Probab=23.68 E-value=5.7e+02 Score=25.05 Aligned_cols=69 Identities=20% Similarity=0.188 Sum_probs=39.8
Q ss_pred CCccccchhhhcCCceeeccCc--------------------------chHHHHHHHHHhhCCCCCEEeEecccccHHHH
Q psy15126 202 NTDRFQARDVSQGADFLMVKPA--------------------------LPYLDIISEVKSRHPAYPLFVYQVSGEYAMLA 255 (300)
Q Consensus 202 n~~~~~~~Da~~GADivmVkPs--------------------------mm~ld~Ir~~~d~~~~vpi~aY~vSgeY~~~r 255 (300)
++......=.+.|+|+|.|.=. .+.+..|+++++...++||++-.
T Consensus 198 ~s~~~a~~l~~~Gvd~I~Vsg~GGt~~~~ie~~R~~~~~~~~~~~~~g~pt~~~l~~i~~~~~~ipvia~G--------- 268 (352)
T PRK05437 198 ISKETAKRLADAGVKAIDVAGAGGTSWAAIENYRARDDRLASYFADWGIPTAQSLLEARSLLPDLPIIASG--------- 268 (352)
T ss_pred CcHHHHHHHHHcCCCEEEECCCCCCCccchhhhhhhccccccccccccCCHHHHHHHHHHhcCCCeEEEEC---------
Confidence 5544444456789999988321 22455666666653467777641
Q ss_pred HHHhCCCCCHHHHHHHHHHHHHHcCCCEEEecch
Q psy15126 256 FAAQAGALDLKRALMETLTCLRRGGADVIISYYT 289 (300)
Q Consensus 256 ~Aa~~~~~n~~eal~E~~~~~~r~GAD~Ii~y~A 289 (300)
|..+.. .+.+.+ ..|||.+.+--+
T Consensus 269 -----GI~~~~----dv~k~l-~~GAd~v~ig~~ 292 (352)
T PRK05437 269 -----GIRNGL----DIAKAL-ALGADAVGMAGP 292 (352)
T ss_pred -----CCCCHH----HHHHHH-HcCCCEEEEhHH
Confidence 344442 334455 478888877543
No 406
>cd02801 DUS_like_FMN Dihydrouridine synthase-like (DUS-like) FMN-binding domain. Members of this family catalyze the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archaea. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. 1VHN, a putative flavin oxidoreductase, has high sequence similarity to DUS. The enzymatic mechanism of 1VHN is not known at the present.
Probab=23.60 E-value=1.9e+02 Score=25.27 Aligned_cols=62 Identities=16% Similarity=0.366 Sum_probs=42.4
Q ss_pred CCcccccCCCCCChHHHHHHHHHHhCCCcEEEeeecCCCCCCCCcceeeCCCCceecHHhHHHHHHHHHHHHHcCCCccc
Q psy15126 4 RDETASFADTPDNPLFQVIPMIRKQFPSLTIACDVCLCGYTSHGHCAIFNEDGSIHYEKTLKRLADISKAFSDAGAHIVA 83 (300)
Q Consensus 4 kd~~~s~a~~~~~~~~~~i~~ik~~~p~l~i~~Dvclc~yt~hGHcgi~~~~g~i~nd~Tl~~l~~~A~~~A~aGad~vA 83 (300)
+|+.|+...+.-..+.+.++.+|+..+ +-|..++.+- + +. + +...+.+..+.++|++.|.
T Consensus 97 ~~~~G~~l~~~~~~~~eii~~v~~~~~-~~v~vk~r~~-~---------~~------~---~~~~~~~~~l~~~Gvd~i~ 156 (231)
T cd02801 97 KGGAGAALLKDPELVAEIVRAVREAVP-IPVTVKIRLG-W---------DD------E---EETLELAKALEDAGASALT 156 (231)
T ss_pred CCCeeehhcCCHHHHHHHHHHHHHhcC-CCEEEEEeec-c---------CC------c---hHHHHHHHHHHHhCCCEEE
Confidence 577777777666778899999999887 5566666431 1 11 1 4455666667788999987
Q ss_pred cC
Q psy15126 84 PS 85 (300)
Q Consensus 84 PS 85 (300)
.+
T Consensus 157 v~ 158 (231)
T cd02801 157 VH 158 (231)
T ss_pred EC
Confidence 64
No 407
>cd06844 STAS Sulphate Transporter and Anti-Sigma factor antagonist domain found in the C-terminal region of sulphate transporters as well as in bacterial and archaeal proteins involved in the regulation of sigma factors. The STAS (Sulphate Transporter and Anti-Sigma factor antagonist) domain is found in the C-terminal region of sulphate transporters as well as in bacterial and archaeal proteins involved in the regulation of sigma factors, like anti-anti-sigma factors and "stressosome" components. The sigma factor regulators are involved in protein-protein interaction which is regulated by phosphorylation.
Probab=23.57 E-value=1.6e+02 Score=22.72 Aligned_cols=34 Identities=21% Similarity=0.228 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHHcCCCEEEecchHHHHHHHhhC
Q psy15126 266 KRALMETLTCLRRGGADVIISYYTPRVLEWLRED 299 (300)
Q Consensus 266 ~eal~E~~~~~~r~GAD~Ii~y~A~~~ld~l~~~ 299 (300)
-.+|.+....+++.|..++++.+-+++.++++..
T Consensus 57 l~~L~~l~~~~~~~g~~l~l~~~~~~v~~~l~~~ 90 (100)
T cd06844 57 TGVLLERSRLAEAVGGQFVLTGISPAVRITLTES 90 (100)
T ss_pred HHHHHHHHHHHHHcCCEEEEECCCHHHHHHHHHh
Confidence 4678888889989999999999999999998753
No 408
>cd08208 RLP_Photo Ribulose bisphosphate carboxylase like proteins from phototrophic bacteria. Ribulose bisphosphate carboxylase (Rubisco) plays an important role in the Calvin reductive pentose phosphate pathway. It catalyzes the primary CO2 fixation step. Rubisco is activated by carbamylation of an active site lysine, stabilized by a divalent cation, which then catalyzes the proton abstraction from the substrate ribulose 1,5 bisphosphate (RuBP) and leads to the formation of two molecules of 3-phosphoglycerate. Members of the Rubisco family can be divided into 4 subgroups, Form I-IV, which differ in their taxonomic distribution and subunit composition. Form I-III have Rubisco activity, while Form IV, also called Rubisco-like proteins (RLP), are missing critical active site residues and therefore do not catalyze CO2 fixation. They are believed to utilize a related enzymatic mechanism, but have divergent functions. The specific function of this subgroup is unknown.
Probab=23.56 E-value=5.6e+02 Score=26.39 Aligned_cols=83 Identities=17% Similarity=0.203 Sum_probs=47.5
Q ss_pred hHHHHHHHHHhhhcccccCCCCCccccchhhhcCCceeeccCc--------ch---HHH----HHHHHHhhCCCCCEEeE
Q psy15126 181 TLKRLADISKAFSDAVYVPNHNTDRFQARDVSQGADFLMVKPA--------LP---YLD----IISEVKSRHPAYPLFVY 245 (300)
Q Consensus 181 tl~~l~~~a~~~a~~~~~~~~n~~~~~~~Da~~GADivmVkPs--------mm---~ld----~Ir~~~d~~~~vpi~aY 245 (300)
|-+.+++++..+ +..|.|+| |=. ++ ++. +|+++.++.-...+.+-
T Consensus 174 sp~~~a~~~y~~------------------~~GGvD~I--KDDE~l~~q~f~p~~eRv~~~~~ai~~a~~eTG~~~~ya~ 233 (424)
T cd08208 174 PPGEFAELGYQS------------------WLGGLDIA--KDDEMLADVDWCPLEERAALLGKARRRAEAETGVPKIYLA 233 (424)
T ss_pred CHHHHHHHHHHH------------------HcCCcccc--cccccccCCCCCCHHHHHHHHHHHHHHHHHhhCCcceEEE
Confidence 456788888777 68999998 632 22 444 44444444333444444
Q ss_pred ecccccHHHHHHHhCCCCCHHHHHHHHHHHHHHcCCCEEEecc---hHHHHHHHhh
Q psy15126 246 QVSGEYAMLAFAAQAGALDLKRALMETLTCLRRGGADVIISYY---TPRVLEWLRE 298 (300)
Q Consensus 246 ~vSgeY~~~r~Aa~~~~~n~~eal~E~~~~~~r~GAD~Ii~y~---A~~~ld~l~~ 298 (300)
++++.. +-++|-..-.+++|++++|+-+ +...++.|++
T Consensus 234 NiT~~~---------------~em~~ra~~a~~~G~~~vmv~~~~~G~~al~~L~~ 274 (424)
T cd08208 234 NITDEV---------------DRLMELHDVAVRNGANALLINAMPVGLSAVRMLRK 274 (424)
T ss_pred EccCCH---------------HHHHHHHHHHHHhCCCEEEEeeecccHHHHHHHHh
Confidence 555532 2233444444568888888766 3444555543
No 409
>PRK00694 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Validated
Probab=23.54 E-value=78 Score=34.00 Aligned_cols=47 Identities=17% Similarity=0.138 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHHHcCCCccccC---CCCcchHHHHHHHHhhCCCCCCccccc
Q psy15126 64 LKRLADISKAFSDAGAHIVAPS---DMMDNRIHAIKQSLFTSRQSSTTGLLS 112 (300)
Q Consensus 64 l~~l~~~A~~~A~aGad~vAPS---dmMDgrv~air~aLd~~g~~~~v~Ims 112 (300)
++.-++|...++++|+++|-.. .---.-+..|++.|...|+ ++++++
T Consensus 44 ~~atv~Qi~~L~~aGceiVRvtvp~~~~A~al~~I~~~L~~~g~--~iPLVA 93 (606)
T PRK00694 44 VDGTVRQICALQEWGCDIVRVTVQGLKEAQACEHIKERLIQQGI--SIPLVA 93 (606)
T ss_pred HHHHHHHHHHHHHcCCCEEEEcCCCHHHHHhHHHHHHHHhccCC--CCCEEe
Confidence 4556778899999999999762 2223457889999999998 478873
No 410
>TIGR02709 branched_ptb branched-chain phosphotransacylase. This model distinguishes branched-chain phosphotransacylases like that of Enterococcus faecalis from closely related subfamilies of phosphate butyryltransferase (EC 2.3.1.19) (TIGR02706) and phosphate acetyltransferase (EC 2.3.1.8) (TIGR00651). Members of this family and of TIGR02706 show considerable crossreactivity, and the occurrence of a member of either family near an apparent leucine dehydrogenase will suggest activity on branched chain-acyl-CoA compounds.
Probab=23.37 E-value=4.1e+02 Score=25.71 Aligned_cols=87 Identities=15% Similarity=0.124 Sum_probs=54.6
Q ss_pred eecHHhHHHHHHHHHHHHHcCCCccccCCCCcchHHHH---HHHHhhC-CCCCCcccccchhhhhcccchhhhhhhcCCC
Q psy15126 58 IHYEKTLKRLADISKAFSDAGAHIVAPSDMMDNRIHAI---KQSLFTS-RQSSTTGLLSYSAKFCSAFYGPFREAAGSAP 133 (300)
Q Consensus 58 i~nd~Tl~~l~~~A~~~A~aGad~vAPSdmMDgrv~ai---r~aLd~~-g~~~~v~ImsysaK~aS~~YGPfRda~gS~~ 133 (300)
|.+...-...++.|+...+.|-- ..+|.|.+... |..|+.. |+ ....++|+.+
T Consensus 47 ii~~~~~~~aa~~av~lv~~G~a----D~lmkG~i~T~~~lravl~~~~gl-~~~~~~S~v~------------------ 103 (271)
T TIGR02709 47 YVHCSDEAAVAQEAVSLVATGQA----QILLKGIIQTHTLLKEMLKSEHQL-KNKPILSHVA------------------ 103 (271)
T ss_pred EEECCChHHHHHHHHHHHHCCCC----CEEEcCCcCcHHHHHHHHHHHcCC-CCCCeeEEEE------------------
Confidence 33334556678889999999843 34577766544 8888775 55 3445555421
Q ss_pred CCCCcceeeCCCCCCceEEEEeecccCCCCCCccccccCCCcccchHhHHHHHHHHHhhh
Q psy15126 134 TFGDRSCYQLPCGSKGLAIRAAVCLCGYTSHGHCAIFNEDGSIHYEKTLKRLADISKAFS 193 (300)
Q Consensus 134 ~~gdr~~yQ~~~~~~~~ai~~dvclc~yt~hGHcgi~~~~g~i~nd~tl~~l~~~a~~~a 193 (300)
.++++ . .+..+.+| ..|.-.+|++.+++|+..-+
T Consensus 104 ------i~~~p-~-~~~l~~tD------------------~~vn~~P~~eqk~~I~~nA~ 137 (271)
T TIGR02709 104 ------MVELP-A-GKTFLLTD------------------CAMNIAPTQATLIEIVENAK 137 (271)
T ss_pred ------EEEec-C-CCEEEEEC------------------CCccCCcCHHHHHHHHHHHH
Confidence 33332 2 44556666 56677789999999876643
No 411
>cd07408 MPP_SA0022_N Staphylococcus aureus SA0022 and related proteins, N-terminal metallophosphatase domain. SA0022 is an uncharacterized Staphylococcus aureus UshA-like protein with two putative domains, an N-terminal metallophosphatase domain and a C-terminal nucleotidase domain. SA0022 also contains a putative C-terminal cell wall anchor domain. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The conserved domain is a double beta-sheet
Probab=23.27 E-value=87 Score=28.52 Aligned_cols=27 Identities=26% Similarity=0.290 Sum_probs=21.4
Q ss_pred CCCHHHHHHHH-HHHHHHcCCCEEEecc
Q psy15126 262 ALDLKRALMET-LTCLRRGGADVIISYY 288 (300)
Q Consensus 262 ~~n~~eal~E~-~~~~~r~GAD~Ii~y~ 288 (300)
+.|.-+++.+. ...++++|||+||+..
T Consensus 152 ~~d~~~~~~~~~v~~l~~~~~D~iIvl~ 179 (257)
T cd07408 152 FEDPIEEAKKVIVAALKAKGADVIVALG 179 (257)
T ss_pred EecHHHHHHHHHHHHHHhCCCCEEEEEe
Confidence 34677888888 7888789999999854
No 412
>TIGR03572 WbuZ glycosyl amidation-associated protein WbuZ. This clade of sequences is highly similar to the HisF protein, but generally represents the second HisF homolog in the genome where the other is an authentic HisF observed in the context of a complete histidine biosynthesis operon. The similarity between these WbuZ sequences and true HisFs is such that often the closest match by BLAST of a WbuZ is a HisF. Only by making a multiple sequence alignment is the homology relationship among the WbuZ sequences made apparent. WbuZ genes are invariably observed in the presence of a homolog of the HisH protein (designated WbuY) and a proposed N-acetyl sugar amidotransferase designated in WbuX in E. coli, IfnA in P. aeriginosa and PseA in C. jejuni. Similarly, this trio of genes is invariably found in the context of saccharide biosynthesis loci. It has been shown that the WbuYZ homologs are not essential components of the activity expressed by WbuX, leading to the proposal that these to pr
Probab=23.12 E-value=2.7e+02 Score=24.78 Aligned_cols=61 Identities=20% Similarity=0.225 Sum_probs=38.8
Q ss_pred hhcCCceeeccC---cc----hHHHHHHHHHhhCCCCCEEeEecccccHHHHHHHhCCCCCHHHHHHHHHHHHHHcCCCE
Q psy15126 211 VSQGADFLMVKP---AL----PYLDIISEVKSRHPAYPLFVYQVSGEYAMLAFAAQAGALDLKRALMETLTCLRRGGADV 283 (300)
Q Consensus 211 a~~GADivmVkP---sm----m~ld~Ir~~~d~~~~vpi~aY~vSgeY~~~r~Aa~~~~~n~~eal~E~~~~~~r~GAD~ 283 (300)
.+.|+|.|.+-. .. ..++.++++++.. ++||++-. |..+.++ +. ..+++.|||.
T Consensus 163 ~~~G~d~i~i~~i~~~g~~~g~~~~~~~~i~~~~-~ipvia~G--------------Gi~s~~d-i~---~~l~~~gadg 223 (232)
T TIGR03572 163 EQLGAGEILLNSIDRDGTMKGYDLELIKTVSDAV-SIPVIALG--------------GAGSLDD-LV---EVALEAGASA 223 (232)
T ss_pred HHcCCCEEEEeCCCccCCcCCCCHHHHHHHHhhC-CCCEEEEC--------------CCCCHHH-HH---HHHHHcCCCE
Confidence 478999887766 21 2589999999874 79987752 1222221 12 2245679999
Q ss_pred EEecchH
Q psy15126 284 IISYYTP 290 (300)
Q Consensus 284 Ii~y~A~ 290 (300)
|++--|.
T Consensus 224 V~vg~a~ 230 (232)
T TIGR03572 224 VAAASLF 230 (232)
T ss_pred EEEehhh
Confidence 9986543
No 413
>PF07293 DUF1450: Protein of unknown function (DUF1450); InterPro: IPR009910 This entry consists of several hypothetical bacterial proteins of around 80 residues in length representing two families. Members contain four highly conserved cysteine residues and their function is unknown.
Probab=23.07 E-value=1.5e+02 Score=23.69 Aligned_cols=52 Identities=21% Similarity=0.257 Sum_probs=38.8
Q ss_pred HHHHHHHHHHhCCCcEEEeeecCCCCCCCCcceeeCC------CCceecHHhHHHHHHHHHHHHH
Q psy15126 18 LFQVIPMIRKQFPSLTIACDVCLCGYTSHGHCAIFNE------DGSIHYEKTLKRLADISKAFSD 76 (300)
Q Consensus 18 ~~~~i~~ik~~~p~l~i~~Dvclc~yt~hGHcgi~~~------~g~i~nd~Tl~~l~~~A~~~A~ 76 (300)
.+++...+++ .|++-|+ +|.=.||||.-.. ||++.--.|-+.|.+....+.+
T Consensus 16 ~~~~~~~Le~-~p~~~Vi------e~gCl~~Cg~C~~~pFAlVnG~~V~A~t~eeL~~kI~~~i~ 73 (78)
T PF07293_consen 16 TDQVYEKLEK-DPDIDVI------EYGCLSYCGPCAKKPFALVNGEIVAAETAEELLEKIKEKIE 73 (78)
T ss_pred hHHHHHHHhc-CCCccEE------EcChhhhCcCCCCCccEEECCEEEecCCHHHHHHHHHHHHh
Confidence 4567777774 6998666 5666678876532 6999999999999998877655
No 414
>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional
Probab=23.03 E-value=2e+02 Score=30.12 Aligned_cols=69 Identities=9% Similarity=0.176 Sum_probs=41.8
Q ss_pred eeeccCcch-HHHHHHHHHhhCCCCCEEeEec-ccccHHHHHHHhCC-----CCCHHHHHHHHHHHHHHcCCCEEEe
Q psy15126 217 FLMVKPALP-YLDIISEVKSRHPAYPLFVYQV-SGEYAMLAFAAQAG-----ALDLKRALMETLTCLRRGGADVIIS 286 (300)
Q Consensus 217 ivmVkPsmm-~ld~Ir~~~d~~~~vpi~aY~v-SgeY~~~r~Aa~~~-----~~n~~eal~E~~~~~~r~GAD~Ii~ 286 (300)
+|.|++|-. .|.+|..+++....+-|..|+- .-....|....+.. +.+.+| +.+.+..+|++|.++||-
T Consensus 86 Vv~i~~s~~Dil~al~~a~~~~~~iavv~~~~~~~~~~~~~~~l~~~i~~~~~~~~~e-~~~~v~~lk~~G~~~vvG 161 (538)
T PRK15424 86 VILIKPSGFDVMQALARARKLTSSIGVVTYQETIPALVAFQKTFNLRIEQRSYVTEED-ARGQINELKANGIEAVVG 161 (538)
T ss_pred EEEecCCHhHHHHHHHHHHhcCCcEEEEecCcccHHHHHHHHHhCCceEEEEecCHHH-HHHHHHHHHHCCCCEEEc
Confidence 455566632 5566666655556777777754 22333344433332 344444 488889999999999884
No 415
>cd07412 MPP_YhcR_N Bacillus subtilis YhcR endonuclease and related proteins, N-terminal metallophosphatase domain. YhcR is a Bacillus subtilis sugar-nonspecific endonuclease. It cleaves endonucleolytically to yield nucleotide 3'-monophosphate products, similar to Staphylococcus aureus micrococcal nuclease. YhcR appears to be located in the cell wall, and is thought to be a substrate for a Bacillus subtilis sortase. YhcR is the major calcium-activated nuclease of B. subtilis. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated wi
Probab=22.98 E-value=95 Score=29.02 Aligned_cols=27 Identities=26% Similarity=0.298 Sum_probs=22.8
Q ss_pred CCCHHHHHHHHHHHHHHcCCCEEEecc
Q psy15126 262 ALDLKRALMETLTCLRRGGADVIISYY 288 (300)
Q Consensus 262 ~~n~~eal~E~~~~~~r~GAD~Ii~y~ 288 (300)
+.|..|++++....+|++|+|+||+..
T Consensus 173 f~d~~e~~~~~v~~lr~~~~D~IIvL~ 199 (288)
T cd07412 173 FTDEVEAINAVAPELKAGGVDAIVVLA 199 (288)
T ss_pred EcCHHHHHHHHHHHHHHCCCCEEEEEe
Confidence 467888999999999768999999754
No 416
>PRK10955 DNA-binding transcriptional regulator CpxR; Provisional
Probab=22.97 E-value=3.7e+02 Score=22.39 Aligned_cols=48 Identities=19% Similarity=0.418 Sum_probs=33.0
Q ss_pred cCCceeeccCcch---HHHHHHHHHhhCCCCCEEeEecccccHHHHHHHhCC
Q psy15126 213 QGADFLMVKPALP---YLDIISEVKSRHPAYPLFVYQVSGEYAMLAFAAQAG 261 (300)
Q Consensus 213 ~GADivmVkPsmm---~ld~Ir~~~d~~~~vpi~aY~vSgeY~~~r~Aa~~~ 261 (300)
...|+|++-..|+ -++.++++++.++ +|++..+..........+.+.|
T Consensus 43 ~~~d~vl~d~~~~~~~g~~~~~~l~~~~~-~~ii~lt~~~~~~~~~~~~~~g 93 (232)
T PRK10955 43 DSIDLLLLDVMMPKKNGIDTLKELRQTHQ-TPVIMLTARGSELDRVLGLELG 93 (232)
T ss_pred cCCCEEEEeCCCCCCcHHHHHHHHHhcCC-CcEEEEECCCCHHHHHHHHHcC
Confidence 3578988876554 6788888887765 9999886655555555555544
No 417
>cd07406 MPP_CG11883_N Drosophila melanogaster CG11883 and related proteins, N-terminal metallophosphatase domain. CG11883 is an uncharacterized Drosophila melanogaster UshA-like protein with two domains, an N-terminal metallophosphatase domain and a C-terminal nucleotidase domain. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at th
Probab=22.91 E-value=95 Score=28.40 Aligned_cols=27 Identities=33% Similarity=0.354 Sum_probs=22.6
Q ss_pred CCCHHHHHHHHHHHHHHcCCCEEEecc
Q psy15126 262 ALDLKRALMETLTCLRRGGADVIISYY 288 (300)
Q Consensus 262 ~~n~~eal~E~~~~~~r~GAD~Ii~y~ 288 (300)
+.|..+++.+....++++|||+|++--
T Consensus 153 ~~d~~~~~~~~v~~~~~~~~D~iVvl~ 179 (257)
T cd07406 153 YRDYVETARELVDELREQGADLIIALT 179 (257)
T ss_pred EcCHHHHHHHHHHHHHhCCCCEEEEEe
Confidence 457888999999889889999998754
No 418
>COG0269 SgbH 3-hexulose-6-phosphate synthase and related proteins [Carbohydrate transport and metabolism]
Probab=22.66 E-value=3.5e+02 Score=25.65 Aligned_cols=61 Identities=15% Similarity=0.211 Sum_probs=40.4
Q ss_pred hhcCCceeeccCcch-----HHHHHHHHHhhCCCCCEEeEecccccHHHHHHHhCCCCCHHHHHHHHHHHHHHcCCCEEE
Q psy15126 211 VSQGADFLMVKPALP-----YLDIISEVKSRHPAYPLFVYQVSGEYAMLAFAAQAGALDLKRALMETLTCLRRGGADVII 285 (300)
Q Consensus 211 a~~GADivmVkPsmm-----~ld~Ir~~~d~~~~vpi~aY~vSgeY~~~r~Aa~~~~~n~~eal~E~~~~~~r~GAD~Ii 285 (300)
+....|+| .=+.+ =+++||++++.||+.+|.+=-= -.| ..=.|+-+.+ ++|||.+.
T Consensus 25 v~~~~dii--EvGTpLik~eG~~aV~~lr~~~pd~~IvAD~K--------------t~D--~G~~e~~ma~-~aGAd~~t 85 (217)
T COG0269 25 VADYVDII--EVGTPLIKAEGMRAVRALRELFPDKIIVADLK--------------TAD--AGAIEARMAF-EAGADWVT 85 (217)
T ss_pred hhhcceEE--EeCcHHHHHhhHHHHHHHHHHCCCCeEEeeee--------------ecc--hhHHHHHHHH-HcCCCEEE
Confidence 45568998 55543 3899999999999999987521 111 2235666666 57777776
Q ss_pred ecchH
Q psy15126 286 SYYTP 290 (300)
Q Consensus 286 ~y~A~ 290 (300)
+--+-
T Consensus 86 V~g~A 90 (217)
T COG0269 86 VLGAA 90 (217)
T ss_pred EEecC
Confidence 65443
No 419
>PRK14040 oxaloacetate decarboxylase; Provisional
Probab=22.65 E-value=9.5e+02 Score=25.62 Aligned_cols=68 Identities=15% Similarity=0.197 Sum_probs=47.8
Q ss_pred HHHHHHHHHhh------CCCCCEEeEecccc-cHHHHHHH-hCCCCCHHHHHHHHHHHHHHcCCCEEEecchHHHH
Q psy15126 226 YLDIISEVKSR------HPAYPLFVYQVSGE-YAMLAFAA-QAGALDLKRALMETLTCLRRGGADVIISYYTPRVL 293 (300)
Q Consensus 226 ~ld~Ir~~~d~------~~~vpi~aY~vSge-Y~~~r~Aa-~~~~~n~~eal~E~~~~~~r~GAD~Ii~y~A~~~l 293 (300)
|+.-+|+.-.. -++.-|.-|+++|- |+-++.-+ ++|..++=+.++|-....++..-++++|-|..++.
T Consensus 270 ~~~~v~~~Y~~~~~~~~~~~~~v~~~e~PGG~~Snl~~ql~~~g~~~~~~evl~e~~~v~~~lG~~~~VTP~Sqiv 345 (593)
T PRK14040 270 YFREVRKKYAKFEGQLKGVDSRILVAQVPGGMLTNMESQLKEQGAADKLDEVLAEIPRVREDLGFIPLVTPTSQIV 345 (593)
T ss_pred HHHHHHHHhccCCcccccCcccEEEEcCCCchHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCCCeECChhHHH
Confidence 56656554432 23566888888655 66665544 67888876677777777878999999999987754
No 420
>PF06866 DUF1256: Protein of unknown function (DUF1256); InterPro: IPR009665 This family consists of several uncharacterised bacterial proteins, which seem to be specific to the orders Clostridia and Bacillales. Family members are typically around 180 residues in length. The function of this family is unknown.
Probab=22.45 E-value=1.1e+02 Score=27.58 Aligned_cols=31 Identities=32% Similarity=0.492 Sum_probs=25.5
Q ss_pred HHHHHHHHHHhCCC-cEEEeeecCCCCCCCCc
Q psy15126 18 LFQVIPMIRKQFPS-LTIACDVCLCGYTSHGH 48 (300)
Q Consensus 18 ~~~~i~~ik~~~p~-l~i~~Dvclc~yt~hGH 48 (300)
+.+.++.|++++|+ .+|+-|.||-.-.+-|+
T Consensus 73 L~e~l~~I~~~~~~~~IIAIDAcLG~~~~vG~ 104 (163)
T PF06866_consen 73 LEETLNEIKKKHPNPFIIAIDACLGRPDNVGY 104 (163)
T ss_pred HHHHHHHHHHHCCCCeEEEEECCCCCcccceE
Confidence 56789999999998 88889999977655554
No 421
>PLN02925 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase
Probab=22.43 E-value=85 Score=34.46 Aligned_cols=161 Identities=20% Similarity=0.277 Sum_probs=92.2
Q ss_pred hHHHHHHHHHHHHHcCCCccccC---CCCcchHHHHHHHHhhCCCCCCcccccchhhhhcccchhh--hhhhcCCCC---
Q psy15126 63 TLKRLADISKAFSDAGAHIVAPS---DMMDNRIHAIKQSLFTSRQSSTTGLLSYSAKFCSAFYGPF--REAAGSAPT--- 134 (300)
Q Consensus 63 Tl~~l~~~A~~~A~aGad~vAPS---dmMDgrv~air~aLd~~g~~~~v~ImsysaK~aS~~YGPf--Rda~gS~~~--- 134 (300)
-++.-++|...++++|+++|-.. .---.-+..|++.|.+.|+ ++++++ =.-|-|- =.|+.....
T Consensus 108 D~eatv~Qi~~l~~aGceiVRvtv~~~~~A~al~~I~~~L~~~g~--~iPLVA------DIHF~~~~Al~a~~~vdkiRI 179 (733)
T PLN02925 108 DVEATVDQVMRIADKGADIVRITVQGKKEADACFEIKNTLVQKGY--NIPLVA------DIHFAPSVALRVAECFDKIRV 179 (733)
T ss_pred cHHHHHHHHHHHHHcCCCEEEEcCCCHHHHHhHHHHHHHHhhcCC--CCCEEE------ecCCCHHHHHHHHHhcCCeEE
Confidence 35667789999999999999763 2233457789999999998 478873 2334331 123333221
Q ss_pred ----CCCcc-ee----------eC--------------CCCCCceEEEEeecccCCCCCCccccccCCCcccc------h
Q psy15126 135 ----FGDRS-CY----------QL--------------PCGSKGLAIRAAVCLCGYTSHGHCAIFNEDGSIHY------E 179 (300)
Q Consensus 135 ----~gdr~-~y----------Q~--------------~~~~~~~ai~~dvclc~yt~hGHcgi~~~~g~i~n------d 179 (300)
+|+++ .+ |- .+.-.+.+||-- +. .|++.. .
T Consensus 180 NPGN~~~~~k~F~~~eYtdeeY~~Ele~i~e~f~~~v~~ak~~~~~iRIG------vN---------~GSLs~ri~~~yG 244 (733)
T PLN02925 180 NPGNFADRRAQFEKLEYTEDDYQKELEHIEEVFTPLVEKCKKYGRAMRIG------TN---------HGSLSDRIMSYYG 244 (733)
T ss_pred CCcccCCccccccccccchhhhhhhHHHHHHHHHHHHHHHHHCCCCEEEe------cC---------CcCchHHHHHHhC
Confidence 23332 11 10 011223444443 11 233321 1
Q ss_pred HhHHHHHHHHHhhhcccccCCCCCccccchhhhcCC-ceee-ccCcch--HHHHHHHHHhh----CCCCCEEeEec---c
Q psy15126 180 KTLKRLADISKAFSDAVYVPNHNTDRFQARDVSQGA-DFLM-VKPALP--YLDIISEVKSR----HPAYPLFVYQV---S 248 (300)
Q Consensus 180 ~tl~~l~~~a~~~a~~~~~~~~n~~~~~~~Da~~GA-Divm-VkPsmm--~ld~Ir~~~d~----~~~vpi~aY~v---S 248 (300)
.|-+.+++-|+.|+ ..=.+.|= |||+ +|-|.. .+.+-|.+-.+ -.+.|+.-.-. +
T Consensus 245 dtp~gmVeSAle~~--------------~i~e~~~f~diviS~KsSn~~~~V~AyR~La~~L~~~g~~yPLhLgvTEAG~ 310 (733)
T PLN02925 245 DSPRGMVESAFEFA--------------RICRKLDYHNFVFSMKASNPVVMVQAYRLLVAEMYVLGWDYPLHLGVTEAGE 310 (733)
T ss_pred CChHHHHHHHHHHH--------------HHHHHCCCCcEEEEEEcCChHHHHHHHHHHHHHHHhcCCCCceEEEEecCCC
Confidence 26677888888875 33345565 4432 355533 67777766554 24789876544 7
Q ss_pred cccHHHHHHHhC
Q psy15126 249 GEYAMLAFAAQA 260 (300)
Q Consensus 249 geY~~~r~Aa~~ 260 (300)
++=+.+|.|++.
T Consensus 311 ~edg~IKSAigi 322 (733)
T PLN02925 311 GEDGRMKSAIGI 322 (733)
T ss_pred CcCceehhHHHH
Confidence 788899999864
No 422
>PRK15115 response regulator GlrR; Provisional
Probab=22.41 E-value=2.8e+02 Score=26.86 Aligned_cols=49 Identities=16% Similarity=0.381 Sum_probs=34.5
Q ss_pred cCCceeeccCcch---HHHHHHHHHhhCCCCCEEeEecccccHHHHHHHhCC
Q psy15126 213 QGADFLMVKPALP---YLDIISEVKSRHPAYPLFVYQVSGEYAMLAFAAQAG 261 (300)
Q Consensus 213 ~GADivmVkPsmm---~ld~Ir~~~d~~~~vpi~aY~vSgeY~~~r~Aa~~~ 261 (300)
...|+|++-..|+ -++.++.+++..+++||+.-+..+.......+.+.|
T Consensus 48 ~~~dlvilD~~lp~~~g~~ll~~l~~~~~~~pvIvlt~~~~~~~~~~a~~~G 99 (444)
T PRK15115 48 EKVDLVISDLRMDEMDGMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQG 99 (444)
T ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCCCCcEEEEECCCCHHHHHHHHhcC
Confidence 4569998886654 678888888778889999876555554455555544
No 423
>COG0274 DeoC Deoxyribose-phosphate aldolase [Nucleotide transport and metabolism]
Probab=22.35 E-value=3.7e+02 Score=25.70 Aligned_cols=65 Identities=23% Similarity=0.204 Sum_probs=39.8
Q ss_pred hhcCCcee-eccC-c-ch------HHHHHHHHHhhCCC-CCEEeEecccccHHHHHHHhCCCCCHHHHHHHHHHHHHHcC
Q psy15126 211 VSQGADFL-MVKP-A-LP------YLDIISEVKSRHPA-YPLFVYQVSGEYAMLAFAAQAGALDLKRALMETLTCLRRGG 280 (300)
Q Consensus 211 a~~GADiv-mVkP-s-mm------~ld~Ir~~~d~~~~-vpi~aY~vSgeY~~~r~Aa~~~~~n~~eal~E~~~~~~r~G 280 (300)
++.|||=| ||-| + .. ...-||.+++.-.+ +++=+= .+.+.++.+|-.+-...++ ++|
T Consensus 87 i~~GAdEiDmVinig~~k~g~~~~V~~eI~~v~~a~~~~~~lKVI------------lEt~~Lt~ee~~~A~~i~~-~aG 153 (228)
T COG0274 87 IENGADEIDMVINIGALKSGNWEAVEREIRAVVEACADAVVLKVI------------LETGLLTDEEKRKACEIAI-EAG 153 (228)
T ss_pred HHcCCCeeeeeeeHHHHhcCCHHHHHHHHHHHHHHhCCCceEEEE------------EeccccCHHHHHHHHHHHH-HhC
Confidence 78999422 2233 2 11 34556666666333 333322 4567788888766666666 899
Q ss_pred CCEEEecc
Q psy15126 281 ADVIISYY 288 (300)
Q Consensus 281 AD~Ii~y~ 288 (300)
||+|=|.-
T Consensus 154 AdFVKTST 161 (228)
T COG0274 154 ADFVKTST 161 (228)
T ss_pred CCEEEcCC
Confidence 99997754
No 424
>TIGR03326 rubisco_III ribulose bisphosphate carboxylase, type III. Members of this protein family are the archaeal, single chain, type III form of ribulose bisphosphate carboxylase, or RuBisCO. Members act is a three-step pathway for conversion of the sugar moiety of AMP to two molecules of 3-phosphoglycerate. Many of these species use ADP-dependent sugar kinases, which form AMP, for glycolysis.
Probab=22.26 E-value=6.3e+02 Score=25.83 Aligned_cols=83 Identities=14% Similarity=0.223 Sum_probs=50.2
Q ss_pred hHHHHHHHHHhhhcccccCCCCCccccchhhhcCCceeeccCc--------ch---HHHHHHHHH----hhCCCCCEEeE
Q psy15126 181 TLKRLADISKAFSDAVYVPNHNTDRFQARDVSQGADFLMVKPA--------LP---YLDIISEVK----SRHPAYPLFVY 245 (300)
Q Consensus 181 tl~~l~~~a~~~a~~~~~~~~n~~~~~~~Da~~GADivmVkPs--------mm---~ld~Ir~~~----d~~~~vpi~aY 245 (300)
|.+.+++++..+ +.-|.|+| |=. .+ ++..+.++. ++.-...+.+-
T Consensus 158 sp~~~a~~~~~~------------------~~GGvD~I--KDDE~l~~q~~~p~~eRv~~~~~a~~~a~~eTG~~~~ya~ 217 (412)
T TIGR03326 158 STEEHAKVAYEL------------------WSGGVDLL--KDDENLTSQPFNRFEERVEKLYKVRDKVEAETGERKEYLA 217 (412)
T ss_pred ChHHHHHHHHHH------------------HhcCCcee--ecCCCCCCCCCccHHHHHHHHHHHHHHHHHHhCCcceEEE
Confidence 567888888887 68999998 733 22 444444444 44333444455
Q ss_pred ecccccHHHHHHHhCCCCCHHHHHHHHHHHHHHcCCCEEEecc---hHHHHHHHhh
Q psy15126 246 QVSGEYAMLAFAAQAGALDLKRALMETLTCLRRGGADVIISYY---TPRVLEWLRE 298 (300)
Q Consensus 246 ~vSgeY~~~r~Aa~~~~~n~~eal~E~~~~~~r~GAD~Ii~y~---A~~~ld~l~~ 298 (300)
++|+.. +-++|-..-++++|++.+|+-+ +...++.|++
T Consensus 218 NiT~~~---------------~em~~ra~~~~~~G~~~~mv~~~~~G~~~l~~l~~ 258 (412)
T TIGR03326 218 NITAPV---------------REMERRAELVADLGGQYVMVDVVVCGWSALQYIRE 258 (412)
T ss_pred EecCCH---------------HHHHHHHHHHHHhCCCeEEEEeeccchHHHHHHHH
Confidence 555432 2334444445578999999766 4555666654
No 425
>COG1038 PycA Pyruvate carboxylase [Energy production and conversion]
Probab=22.11 E-value=2.3e+02 Score=32.28 Aligned_cols=67 Identities=24% Similarity=0.418 Sum_probs=0.0
Q ss_pred hHHHHHHHHHhhhcccccCCCCCccccchhhhcCCceeeccCc--ch----HHHHHHHHHhhCCCCCEEeEec--ccccH
Q psy15126 181 TLKRLADISKAFSDAVYVPNHNTDRFQARDVSQGADFLMVKPA--LP----YLDIISEVKSRHPAYPLFVYQV--SGEYA 252 (300)
Q Consensus 181 tl~~l~~~a~~~a~~~~~~~~n~~~~~~~Da~~GADivmVkPs--mm----~ld~Ir~~~d~~~~vpi~aY~v--SgeY~ 252 (300)
||++..++|... .++||+||-||-= ++ --..|+++++.+ ++||--+.- ||
T Consensus 692 ~L~YY~~lA~el------------------~~~GaHIlaIKDMAGLLKP~AA~~Li~aLr~~~-dlPIHlHTHDTsG--- 749 (1149)
T COG1038 692 TLDYYVKLAKEL------------------EKAGAHILAIKDMAGLLKPAAAYRLISALRETV-DLPIHLHTHDTSG--- 749 (1149)
T ss_pred cHHHHHHHHHHH------------------HhcCCcEEEehhhhhccCHHHHHHHHHHHHHhc-CCceEEeccCCCc---
Q ss_pred HHHHHHhCCCCCHHHHHHHHHHHHHHcCCCEE
Q psy15126 253 MLAFAAQAGALDLKRALMETLTCLRRGGADVI 284 (300)
Q Consensus 253 ~~r~Aa~~~~~n~~eal~E~~~~~~r~GAD~I 284 (300)
..+.-.+... .+|+|+|
T Consensus 750 --------------~~~at~~aA~-~AGvDiv 766 (1149)
T COG1038 750 --------------NGVATYLAAV-EAGVDIV 766 (1149)
T ss_pred --------------cHHHHHHHHH-HcCCchh
No 426
>cd07410 MPP_CpdB_N Escherichia coli CpdB and related proteins, N-terminal metallophosphatase domain. CpdB is a bacterial periplasmic protein with an N-terminal metallophosphatase domain and a C-terminal 3'-nucleotidase domain. This alignment model represents the N-terminal metallophosphatase domain, which has 2',3'-cyclic phosphodiesterase activity, hydrolyzing the 2',3'-cyclic phosphates of adenosine, guanosine, cytosine and uridine to yield nucleoside and phosphate. CpdB also hydrolyzes the chromogenic substrates p-nitrophenyl phosphate (PNPP), bis(PNPP) and p-nitrophenyl phosphorylcholine (NPPC). CpdB is thought to play a scavenging role during RNA hydrolysis by converting the non-transportable nucleotides produced by RNaseI to nucleosides which can easily enter a cell for use as a carbon source. This family also includes YfkN, a Bacillus subtilis nucleotide phosphoesterase with two copies of each of the metallophosphatase and 3'-nucleotidase domains. The N-terminal metallophos
Probab=21.94 E-value=1e+02 Score=28.15 Aligned_cols=27 Identities=26% Similarity=0.265 Sum_probs=21.5
Q ss_pred CCCHHHHHHHHHHHHHHcCCCEEEecc
Q psy15126 262 ALDLKRALMETLTCLRRGGADVIISYY 288 (300)
Q Consensus 262 ~~n~~eal~E~~~~~~r~GAD~Ii~y~ 288 (300)
+.+..+++++....+|.+|||+||+-.
T Consensus 165 ~~d~~~~~~~~v~~lr~~~~D~IIvl~ 191 (277)
T cd07410 165 FTDPVETAKKYVPKLRAEGADVVVVLA 191 (277)
T ss_pred EcCHHHHHHHHHHHHHHcCCCEEEEEe
Confidence 356777889999999766999998754
No 427
>PRK09016 quinolinate phosphoribosyltransferase; Validated
Probab=21.90 E-value=2.3e+02 Score=27.75 Aligned_cols=55 Identities=15% Similarity=0.176 Sum_probs=39.9
Q ss_pred HHHHHHHHHHhCCCcEEEeeecCCCCCCCCcceeeCCCCceecHHhHHHHHHHHHHHHHcCCCccccCCCCcchHHHHHH
Q psy15126 18 LFQVIPMIRKQFPSLTIACDVCLCGYTSHGHCAIFNEDGSIHYEKTLKRLADISKAFSDAGAHIVAPSDMMDNRIHAIKQ 97 (300)
Q Consensus 18 ~~~~i~~ik~~~p~l~i~~Dvclc~yt~hGHcgi~~~~g~i~nd~Tl~~l~~~A~~~A~aGad~vAPSdmMDgrv~air~ 97 (300)
+.++++.+|+..|+.-|..-|. | .++++.++++|+|+|-.--|-...+..+-+
T Consensus 195 i~~av~~~r~~~~~~kIeVEv~-----------------------s----leea~ea~~~gaDiI~LDn~s~e~~~~av~ 247 (296)
T PRK09016 195 IRQAVEKAFWLHPDVPVEVEVE-----------------------N----LDELDQALKAGADIIMLDNFTTEQMREAVK 247 (296)
T ss_pred HHHHHHHHHHhCCCCCEEEEeC-----------------------C----HHHHHHHHHcCCCEEEeCCCChHHHHHHHH
Confidence 7889999999988755443332 2 467888999999999887777655555555
Q ss_pred HH
Q psy15126 98 SL 99 (300)
Q Consensus 98 aL 99 (300)
.+
T Consensus 248 ~~ 249 (296)
T PRK09016 248 RT 249 (296)
T ss_pred hh
Confidence 43
No 428
>cd04731 HisF The cyclase subunit of imidazoleglycerol phosphate synthase (HisF). Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and plants, or peformed by a heterodimer (HisH-glutaminase and HisF-cyclase), like in bacteria.
Probab=21.83 E-value=4.3e+02 Score=23.73 Aligned_cols=34 Identities=21% Similarity=0.220 Sum_probs=24.6
Q ss_pred hhcCCceeec---cCc----chHHHHHHHHHhhCCCCCEEeE
Q psy15126 211 VSQGADFLMV---KPA----LPYLDIISEVKSRHPAYPLFVY 245 (300)
Q Consensus 211 a~~GADivmV---kPs----mm~ld~Ir~~~d~~~~vpi~aY 245 (300)
.+.|+|.|.| .+. ...++.++++++.. ++|+.+.
T Consensus 159 ~~~G~d~i~v~~i~~~g~~~g~~~~~i~~i~~~~-~~pvia~ 199 (243)
T cd04731 159 EELGAGEILLTSMDRDGTKKGYDLELIRAVSSAV-NIPVIAS 199 (243)
T ss_pred HHCCCCEEEEeccCCCCCCCCCCHHHHHHHHhhC-CCCEEEe
Confidence 4789998777 332 12688899998874 7998876
No 429
>PTZ00372 endonuclease 4-like protein; Provisional
Probab=21.78 E-value=4.1e+02 Score=27.24 Aligned_cols=36 Identities=11% Similarity=0.062 Sum_probs=27.0
Q ss_pred HHHHHHHHcCCCcccc----------CCCCcchHHHHHHHHhhCCC
Q psy15126 69 DISKAFSDAGAHIVAP----------SDMMDNRIHAIKQSLFTSRQ 104 (300)
Q Consensus 69 ~~A~~~A~aGad~vAP----------SdmMDgrv~air~aLd~~g~ 104 (300)
+......+.|+..+.. ..+-+..+...++.+...|+
T Consensus 145 ~a~~~a~~~g~~afqiF~~npr~w~~~~~~~~~~~~f~~~~~~~gi 190 (413)
T PTZ00372 145 NSPINAYNIAGQAFALFLKNQRTWNSPPLSDETIDKFKENCKKYNY 190 (413)
T ss_pred HHHHHHHHcCCCEEEEEcCCCccCCCCCCCHHHHHHHHHHHHHcCC
Confidence 3445566788888764 34667889999999999988
No 430
>PRK06252 methylcobalamin:coenzyme M methyltransferase; Validated
Probab=21.77 E-value=59 Score=30.56 Aligned_cols=69 Identities=13% Similarity=0.179 Sum_probs=42.4
Q ss_pred hHHHHHHHHHHhCCC-cEEEeeecCCCCCCCCcc-e---eeCCCCceecHHhHHH--------HHHHHHHHHHcCCCccc
Q psy15126 17 PLFQVIPMIRKQFPS-LTIACDVCLCGYTSHGHC-A---IFNEDGSIHYEKTLKR--------LADISKAFSDAGAHIVA 83 (300)
Q Consensus 17 ~~~~~i~~ik~~~p~-l~i~~Dvclc~yt~hGHc-g---i~~~~g~i~nd~Tl~~--------l~~~A~~~A~aGad~vA 83 (300)
.+.++|+.+|++.++ +.|+.- +..|||.-++- | ++. .-..+.+.+++ +.+.+..+.++|+|+|.
T Consensus 122 ~~leai~~l~~~~~~~~pv~g~-v~gP~Tla~~l~g~~~~~~--~l~~~pe~~~~ll~~i~~~~~~~~~~~~~aGad~I~ 198 (339)
T PRK06252 122 TVLEAIKILKEKVGEEVPIIAG-LTGPISLASSLMGPKNFLK--WLIKKPELAHEFLDFVTDFCIEYAKAQLEAGADVIC 198 (339)
T ss_pred HHHHHHHHHHHHcCCcCceeCc-cCChHHHHHHHHHHHHHHH--HHHHCHHHHHHHHHHHHHHHHHHHHHHHHcCCCEEE
Confidence 456788899999984 655544 57888876541 1 110 11123333333 34456668889999998
Q ss_pred cCCCC
Q psy15126 84 PSDMM 88 (300)
Q Consensus 84 PSdmM 88 (300)
..|..
T Consensus 199 i~d~~ 203 (339)
T PRK06252 199 IADPS 203 (339)
T ss_pred eCCCC
Confidence 87753
No 431
>PRK05337 beta-hexosaminidase; Provisional
Probab=21.68 E-value=4.2e+02 Score=25.93 Aligned_cols=19 Identities=16% Similarity=0.336 Sum_probs=14.4
Q ss_pred HHHHHHHcCCCc-cccCCCC
Q psy15126 70 ISKAFSDAGAHI-VAPSDMM 88 (300)
Q Consensus 70 ~A~~~A~aGad~-vAPSdmM 88 (300)
++.++...|+++ .+|.--.
T Consensus 106 ~a~Elra~Gin~~~aPvlDv 125 (337)
T PRK05337 106 MAAELRACGIDLSFAPVLDL 125 (337)
T ss_pred HHHHHHHhCCCccccCccCC
Confidence 477888999998 7884443
No 432
>cd04735 OYE_like_4_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 4. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=21.57 E-value=1.3e+02 Score=29.17 Aligned_cols=70 Identities=11% Similarity=0.097 Sum_probs=47.4
Q ss_pred CCcccccCCCCCChHHHHHHHHHHhCC-----CcEEEeeecCCCCCCCCcceeeCCCCceecHHhHHHHHHHHHHHHHcC
Q psy15126 4 RDETASFADTPDNPLFQVIPMIRKQFP-----SLTIACDVCLCGYTSHGHCAIFNEDGSIHYEKTLKRLADISKAFSDAG 78 (300)
Q Consensus 4 kd~~~s~a~~~~~~~~~~i~~ik~~~p-----~l~i~~Dvclc~yt~hGHcgi~~~~g~i~nd~Tl~~l~~~A~~~A~aG 78 (300)
.|+.|-.-.|---.+.+.|+.||++.+ ++.|..-+...+|. ++| .|.+...+.+..+.++|
T Consensus 183 ~D~yGGslenR~r~~~eii~~vr~~vg~~~~~~~~v~~R~s~~~~~---------~~g-----~~~ee~~~i~~~L~~~G 248 (353)
T cd04735 183 TDEWGGSLENRMRFPLAVVKAVQEVIDKHADKDFILGYRFSPEEPE---------EPG-----IRMEDTLALVDKLADKG 248 (353)
T ss_pred CcccCCcHHHHHHHHHHHHHHHHHHhccccCCCceEEEEECccccc---------CCC-----CCHHHHHHHHHHHHHcC
Confidence 355554434444567789999999985 78888777654432 112 23455677788888999
Q ss_pred CCccccCCC
Q psy15126 79 AHIVAPSDM 87 (300)
Q Consensus 79 ad~vAPSdm 87 (300)
+|.|..|..
T Consensus 249 vD~I~Vs~g 257 (353)
T cd04735 249 LDYLHISLW 257 (353)
T ss_pred CCEEEeccC
Confidence 999998764
No 433
>PRK05286 dihydroorotate dehydrogenase 2; Reviewed
Probab=21.57 E-value=2.8e+02 Score=26.86 Aligned_cols=49 Identities=18% Similarity=0.205 Sum_probs=31.1
Q ss_pred HHHHHHHHHhhCC----CCCEEeEecccccHHHHHHHhCCCCCHHHHHHHHHHHHHHcCCCEEEecc
Q psy15126 226 YLDIISEVKSRHP----AYPLFVYQVSGEYAMLAFAAQAGALDLKRALMETLTCLRRGGADVIISYY 288 (300)
Q Consensus 226 ~ld~Ir~~~d~~~----~vpi~aY~vSgeY~~~r~Aa~~~~~n~~eal~E~~~~~~r~GAD~Ii~y~ 288 (300)
..++++++++... ++||++=- |- + .+. +-+.|....+.++|||.|.+.-
T Consensus 194 ~~eiv~aVr~~~~~~~~~~PV~vKl-sp-----------~-~~~-~~~~~ia~~l~~~Gadgi~~~n 246 (344)
T PRK05286 194 LDELLAALKEAQAELHGYVPLLVKI-AP-----------D-LSD-EELDDIADLALEHGIDGVIATN 246 (344)
T ss_pred HHHHHHHHHHHHhccccCCceEEEe-CC-----------C-CCH-HHHHHHHHHHHHhCCcEEEEeC
Confidence 4577777777643 38887531 11 1 122 2367777777789999998754
No 434
>TIGR02855 spore_yabG sporulation peptidase YabG. Members of this family are the protein YabG, demonstrated for Bacillus subtilis to be an endopeptidase able to release N-terminal peptides from a number of sporulation proteins, including CotT, CotF, and SpoIVA. It appears to be expressed under control of sigma-K.
Probab=21.53 E-value=79 Score=31.03 Aligned_cols=28 Identities=25% Similarity=0.421 Sum_probs=21.9
Q ss_pred HHHHHHHHHhCCCcEEEeeecCCCCCCCCcceeeCCCC
Q psy15126 19 FQVIPMIRKQFPSLTIACDVCLCGYTSHGHCAIFNEDG 56 (300)
Q Consensus 19 ~~~i~~ik~~~p~l~i~~Dvclc~yt~hGHcgi~~~~g 56 (300)
.+..+.+++--||++|+| ||+|++.+.|
T Consensus 143 ~~i~~Ll~~~~PDIlViT----------GHD~~~K~~~ 170 (283)
T TIGR02855 143 EKVLDLIEEVRPDILVIT----------GHDAYSKNKG 170 (283)
T ss_pred HHHHHHHHHhCCCEEEEe----------CchhhhcCCC
Confidence 456677778789999997 9999996433
No 435
>PRK00366 ispG 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Reviewed
Probab=21.44 E-value=8.8e+02 Score=24.75 Aligned_cols=73 Identities=19% Similarity=0.293 Sum_probs=50.9
Q ss_pred hhcCCceeecc-CcchHHHHHHHHHhhCCCCCEEeEecccccHHHHHHHhC-------CCCC--H-HHHHHHHHHHHHHc
Q psy15126 211 VSQGADFLMVK-PALPYLDIISEVKSRHPAYPLFVYQVSGEYAMLAFAAQA-------GALD--L-KRALMETLTCLRRG 279 (300)
Q Consensus 211 a~~GADivmVk-Psmm~ld~Ir~~~d~~~~vpi~aY~vSgeY~~~r~Aa~~-------~~~n--~-~eal~E~~~~~~r~ 279 (300)
.++|+|+|=|+ |.+--...+++++++. ++|+++= .=-.|...-.|++. ||-| . +|-+.+.....|+.
T Consensus 52 ~~aGceiVRvav~~~~~a~al~~I~~~~-~iPlvAD-IHFd~~lAl~a~~~G~~~iRINPGNig~~~~~v~~vv~~ak~~ 129 (360)
T PRK00366 52 ARAGCEIVRVAVPDMEAAAALPEIKKQL-PVPLVAD-IHFDYRLALAAAEAGADALRINPGNIGKRDERVREVVEAAKDY 129 (360)
T ss_pred HHcCCCEEEEccCCHHHHHhHHHHHHcC-CCCEEEe-cCCCHHHHHHHHHhCCCEEEECCCCCCchHHHHHHHHHHHHHC
Confidence 79999999665 4455788899999886 6999884 23356666666654 2333 2 77888888887776
Q ss_pred CCCEEE
Q psy15126 280 GADVII 285 (300)
Q Consensus 280 GAD~Ii 285 (300)
|.-|=|
T Consensus 130 ~ipIRI 135 (360)
T PRK00366 130 GIPIRI 135 (360)
T ss_pred CCCEEE
Confidence 655433
No 436
>cd00439 Transaldolase Transaldolase. Enzymes found in the non-oxidative branch of the pentose phosphate pathway, that catalyze the reversible transfer of a dihydroxyacetone group from fructose-6-phosphate to erythrose-4-phosphate yielding sedoheptulose-7-phosphate and glyceraldehyde-3-phosphate. They are members of the class I aldolases, who are characterized by using a Schiff-base mechanism for stabilization of the reaction intermediates.
Probab=21.40 E-value=96 Score=29.15 Aligned_cols=67 Identities=25% Similarity=0.226 Sum_probs=36.6
Q ss_pred CCCCCChHHHHHHHHHHhCC--CcEEEeeecCCCCCCCCccee--eCCCCceecHHhHHHHHHHHHHHHHcCCCcccc
Q psy15126 11 ADTPDNPLFQVIPMIRKQFP--SLTIACDVCLCGYTSHGHCAI--FNEDGSIHYEKTLKRLADISKAFSDAGAHIVAP 84 (300)
Q Consensus 11 a~~~~~~~~~~i~~ik~~~p--~l~i~~Dvclc~yt~hGHcgi--~~~~g~i~nd~Tl~~l~~~A~~~A~aGad~vAP 84 (300)
+++.+..+.+|-+ |.+.+| +++| =-|-|-.|=-.+ +...| |.--.|+---.+|++..++||+++|+|
T Consensus 96 ~~d~~~mi~~A~~-l~~~~~~~nv~I-----KIPaT~~Gl~A~~~L~~~G-I~vn~T~vfs~~Qa~~aa~Aga~~isp 166 (252)
T cd00439 96 ADDTQGMVEAAKY-LSKVVNRRNIYI-----KIPATAEGIPAIKDLIAAG-ISVNVTLIFSIAQYEAVADAGTSVASP 166 (252)
T ss_pred cCCHHHHHHHHHH-HHHhcCcccEEE-----EeCCCHHHHHHHHHHHHCC-CceeeeeecCHHHHHHHHHcCCCEEEE
Confidence 3555666666554 344454 5444 125554443221 11222 222233333457999999999999999
No 437
>PRK07315 fructose-bisphosphate aldolase; Provisional
Probab=21.32 E-value=1.5e+02 Score=28.44 Aligned_cols=51 Identities=25% Similarity=0.372 Sum_probs=37.9
Q ss_pred hhcCCceeecc--Cc---c----h--HHHHHHHHHhhCCCCCEEeEecccc-cHHHHHHHhCC
Q psy15126 211 VSQGADFLMVK--PA---L----P--YLDIISEVKSRHPAYPLFVYQVSGE-YAMLAFAAQAG 261 (300)
Q Consensus 211 a~~GADivmVk--Ps---m----m--~ld~Ir~~~d~~~~vpi~aY~vSge-Y~~~r~Aa~~~ 261 (300)
++.|+|.|-|. |. - + .++.++++++..+++|+....-||- ---++.+.+.|
T Consensus 163 ~~tgvD~LAv~iG~vHG~y~t~~k~l~~e~L~~i~~~~~~iPlVlhGGSGi~~e~~~~~i~~G 225 (293)
T PRK07315 163 VETGIDFLAAGIGNIHGPYPENWEGLDLDHLEKLTEAVPGFPIVLHGGSGIPDDQIQEAIKLG 225 (293)
T ss_pred HHcCCCEEeeccccccccCCCCCCcCCHHHHHHHHHhccCCCEEEECCCCCCHHHHHHHHHcC
Confidence 47899999766 54 1 1 4788999988865699999988653 45677777766
No 438
>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed
Probab=21.32 E-value=1.9e+02 Score=31.00 Aligned_cols=69 Identities=22% Similarity=0.362 Sum_probs=47.1
Q ss_pred CCcccccCCCCCChHHHHHHHHHHhCC-CcEEEeeecCCCCCCCCcceeeCCCCceecHHhHHHHHHHHHHHHHcCCCcc
Q psy15126 4 RDETASFADTPDNPLFQVIPMIRKQFP-SLTIACDVCLCGYTSHGHCAIFNEDGSIHYEKTLKRLADISKAFSDAGAHIV 82 (300)
Q Consensus 4 kd~~~s~a~~~~~~~~~~i~~ik~~~p-~l~i~~Dvclc~yt~hGHcgi~~~~g~i~nd~Tl~~l~~~A~~~A~aGad~v 82 (300)
+|+-|..-.|---.+.+.+++||+..| ++.|..=+....|. ++| .|++...+.+..+.++|+|.|
T Consensus 590 tD~yGGslenR~r~~~eiv~~ir~~~~~~~~v~~ri~~~~~~---------~~g-----~~~~~~~~~~~~l~~~g~d~i 655 (765)
T PRK08255 590 TDEYGGSLENRLRYPLEVFRAVRAVWPAEKPMSVRISAHDWV---------EGG-----NTPDDAVEIARAFKAAGADLI 655 (765)
T ss_pred CCCCCCCHHHHhHHHHHHHHHHHHhcCCCCeeEEEEcccccc---------CCC-----CCHHHHHHHHHHHHhcCCcEE
Confidence 466665444455567789999999995 57776555554442 122 255566678888889999999
Q ss_pred ccCC
Q psy15126 83 APSD 86 (300)
Q Consensus 83 APSd 86 (300)
..|.
T Consensus 656 ~vs~ 659 (765)
T PRK08255 656 DVSS 659 (765)
T ss_pred EeCC
Confidence 8874
No 439
>COG1794 RacX Aspartate racemase [Cell envelope biogenesis, outer membrane]
Probab=21.24 E-value=2.8e+02 Score=26.57 Aligned_cols=57 Identities=19% Similarity=0.314 Sum_probs=37.9
Q ss_pred HHHHHHHHhh-CCCCCEEeEecccccHHHHHHHh-CCCCCHHHHHHHHHHHHHHcCCCEEEe
Q psy15126 227 LDIISEVKSR-HPAYPLFVYQVSGEYAMLAFAAQ-AGALDLKRALMETLTCLRRGGADVIIS 286 (300)
Q Consensus 227 ld~Ir~~~d~-~~~vpi~aY~vSgeY~~~r~Aa~-~~~~n~~eal~E~~~~~~r~GAD~Ii~ 286 (300)
...+|+-++. |+ -.|.-|++ .+.-+..+.. -+|-+..+.|....+.+.++|||+|+.
T Consensus 23 ne~~~~~~g~~h~-~~i~~~s~--~f~~~~~~q~~~~w~~~~~~L~~~a~~Le~~GAd~i~l 81 (230)
T COG1794 23 NEAVRAKLGGLHS-AELLLYSV--DFPEIETLQRAGEWDEAGEILIDAAKKLERAGADFIVL 81 (230)
T ss_pred HHHHHHHhCCcCc-chhheecC--CcccHHHHHccCccccHHHHHHHHHHHHHhcCCCEEEE
Confidence 4445555555 43 33444544 4444444433 368899999999999999999999875
No 440
>cd07577 Ph0642_like Pyrococcus horikoshii Ph0642 and related proteins, members of the nitrilase superfamily (putative class 13 nitrilases). Uncharacterized subgroup of the nitrilase superfamily. This superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. Pyrococcus horikoshii Ph0642 is a hypothetical protein belonging to this subgroup. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). This subgroup was classified as belonging to class 13, which represents proteins that at the time were difficult to place in a distinct similarity group. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.
Probab=21.20 E-value=1.1e+02 Score=27.43 Aligned_cols=70 Identities=21% Similarity=0.208 Sum_probs=45.0
Q ss_pred CCCChHHHHHHHHHHhCCCcEEEeeecCCCCCCCCcceeeCCCCceecHHhHHHHHHHHHHHHHcCCCccccC
Q psy15126 13 TPDNPLFQVIPMIRKQFPSLTIACDVCLCGYTSHGHCAIFNEDGSIHYEKTLKRLADISKAFSDAGAHIVAPS 85 (300)
Q Consensus 13 ~~~~~~~~~i~~ik~~~p~l~i~~Dvclc~yt~hGHcgi~~~~g~i~nd~Tl~~l~~~A~~~A~aGad~vAPS 85 (300)
+.+.-+.+..+.|+++-++|+|.--.++++|....+.-+..-......+.+++.|.+.|..+ |+.++...
T Consensus 13 d~~~N~~~~~~~i~~a~adlvvfPE~~l~gy~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~---~i~ii~G~ 82 (259)
T cd07577 13 EVEKNLKKVESLIKGVEADLIVLPELFNTGYAFTSKEEVASLAESIPDGPTTRFLQELARET---GAYIVAGL 82 (259)
T ss_pred CHHHHHHHHHHHHHHhCCCEEEcccccccCCCcCCHHHHHHhhcccCCChHHHHHHHHHHHh---CcEEEecc
Confidence 45566788888888776899999999999987533222211000111345677777777655 78777653
No 441
>KOG2804|consensus
Probab=21.17 E-value=85 Score=31.54 Aligned_cols=27 Identities=22% Similarity=0.385 Sum_probs=24.1
Q ss_pred HHHHHHHHHhCCCcEEEeeecCCCCCC
Q psy15126 19 FQVIPMIRKQFPSLTIACDVCLCGYTS 45 (300)
Q Consensus 19 ~~~i~~ik~~~p~l~i~~Dvclc~yt~ 45 (300)
.|.+...|+.||++++|.=||-++-|.
T Consensus 80 arqL~QaK~~FPNvyLiVGvc~De~Th 106 (348)
T KOG2804|consen 80 ARQLEQAKKLFPNVYLIVGVCSDELTH 106 (348)
T ss_pred HHHHHHHHHhCCCeEEEEeecCchhhh
Confidence 478899999999999999999998774
No 442
>PF01053 Cys_Met_Meta_PP: Cys/Met metabolism PLP-dependent enzyme; InterPro: IPR000277 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal). Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. A number of pyridoxal-dependent enzymes involved in the metabolism of cysteine, homocysteine and methionine have been shown [, ] to be evolutionary related. These enzymes are proteins of about 400 amino-acid residues. The pyridoxal-P group is attached to a lysine residue located in the central section of these enzymes.; GO: 0030170 pyridoxal phosphate binding, 0006520 cellular amino acid metabolic process; PDB: 1PFF_A 2NMP_A 3ELP_B 3COG_C 1CS1_A 1E5E_B 3RI6_A 1E5F_A 2FQ6_B 1CL2_B ....
Probab=21.17 E-value=1.3e+02 Score=29.91 Aligned_cols=39 Identities=23% Similarity=0.339 Sum_probs=27.5
Q ss_pred HHHHHHHHHhhh-cccccCCCCCccccchhhhcCCceeec
Q psy15126 182 LKRLADISKAFS-DAVYVPNHNTDRFQARDVSQGADFLMV 220 (300)
Q Consensus 182 l~~l~~~a~~~a-~~~~~~~~n~~~~~~~Da~~GADivmV 220 (300)
|++++++|..+- -.+-|||.=..-+...-.+-|||+|+.
T Consensus 159 l~~i~~~a~~~g~~~~vVDnT~atp~~~~pL~~GaDivv~ 198 (386)
T PF01053_consen 159 LEAIAKLAKEHGDILVVVDNTFATPYNQNPLELGADIVVH 198 (386)
T ss_dssp HHHHHHHHHHTTT-EEEEECTTTHTTTC-GGGGT-SEEEE
T ss_pred HHHHHHHHHHhCCceEEeeccccceeeeccCcCCceEEEe
Confidence 788899888875 566677776666666678999999953
No 443
>cd00717 URO-D Uroporphyrinogen decarboxylase (URO-D) is a dimeric cytosolic enzyme that decarboxylates the four acetate side chains of uroporphyrinogen III (uro-III) to create coproporphyrinogen III, without requiring any prosthetic groups or cofactors. This reaction is located at the branching point of the tetrapyrrole biosynthetic pathway, leading to the biosynthesis of heme, chlorophyll or bacteriochlorophyll. URO-D deficiency is responsible for the human genetic diseases familial porphyria cutanea tarda (fPCT) and hepatoerythropoietic porphyria (HEP).
Probab=21.14 E-value=53 Score=30.96 Aligned_cols=67 Identities=18% Similarity=0.196 Sum_probs=39.4
Q ss_pred HHHHHHHHHHhCCC-cEEEeeecCCCCCCCCcce----------eeCCCCceecHHhHHH--------HHHHHHHHHHcC
Q psy15126 18 LFQVIPMIRKQFPS-LTIACDVCLCGYTSHGHCA----------IFNEDGSIHYEKTLKR--------LADISKAFSDAG 78 (300)
Q Consensus 18 ~~~~i~~ik~~~p~-l~i~~Dvclc~yt~hGHcg----------i~~~~g~i~nd~Tl~~--------l~~~A~~~A~aG 78 (300)
+.++++.+|+++++ +.++ =.+..|||.-++-- ++. --+.+.+-+++ +.+.+..+.++|
T Consensus 114 ~leai~~l~~~~~~~~~i~-g~v~gP~Tla~~l~~~~~~~~~~~~~~--~l~~~Pe~v~~~l~~it~~~~~~~~~~ieaG 190 (335)
T cd00717 114 VYEAIKLTRKELPGEVPLI-GFAGAPWTLASYMIEGGGSKDFAKAKK--MMYTDPEAFHALLDKLTDATIEYLKAQIEAG 190 (335)
T ss_pred HHHHHHHHHHHcCCCceEE-eecCCHHHHHHHHHCCCCCccHHHHHH--HHHhCHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 45688899999986 4444 34688999776421 110 01112222222 344555667789
Q ss_pred CCccccCCC
Q psy15126 79 AHIVAPSDM 87 (300)
Q Consensus 79 ad~vAPSdm 87 (300)
+|+|...|.
T Consensus 191 ad~i~i~d~ 199 (335)
T cd00717 191 AQAVQIFDS 199 (335)
T ss_pred CCEEEEeCc
Confidence 999976664
No 444
>PRK02048 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Provisional
Probab=21.14 E-value=96 Score=33.41 Aligned_cols=160 Identities=19% Similarity=0.234 Sum_probs=90.5
Q ss_pred HHHHHHHHHHHHHcCCCccccC---CCCcchHHHHHHHHhhCCCCCCcccccchhhhhcccchhh--hhhhcC------C
Q psy15126 64 LKRLADISKAFSDAGAHIVAPS---DMMDNRIHAIKQSLFTSRQSSTTGLLSYSAKFCSAFYGPF--REAAGS------A 132 (300)
Q Consensus 64 l~~l~~~A~~~A~aGad~vAPS---dmMDgrv~air~aLd~~g~~~~v~ImsysaK~aS~~YGPf--Rda~gS------~ 132 (300)
++.-++|...++++|+++|-.. .---.-+..|++.|...|+ ++++++ =.-|-|- =.|+.. +
T Consensus 40 ~~atv~Qi~~l~~aGceiVRvtv~~~~~a~~l~~I~~~l~~~G~--~iPLVA------DIHF~~~~A~~a~~~v~kiRIN 111 (611)
T PRK02048 40 TEACVAQAKRIIDAGGEYVRLTTQGVREAENLMNINIGLRSQGY--MVPLVA------DVHFNPKVADVAAQYAEKVRIN 111 (611)
T ss_pred HHHHHHHHHHHHHcCCCEEEEcCCCHHHHHhHHHHHHHHhhcCC--CCCEEE------ecCCCcHHHHHHHHhhCCEEEC
Confidence 4566778899999999999762 2223457789999999999 478873 2333331 122222 1
Q ss_pred CC-CCCcc-eeeCC------------------------CCCCceEEEEeecccCCCCCCccccccCCCcccc------hH
Q psy15126 133 PT-FGDRS-CYQLP------------------------CGSKGLAIRAAVCLCGYTSHGHCAIFNEDGSIHY------EK 180 (300)
Q Consensus 133 ~~-~gdr~-~yQ~~------------------------~~~~~~ai~~dvclc~yt~hGHcgi~~~~g~i~n------d~ 180 (300)
|. +||++ .+... +.-.+.+||-- +.| |++.. ..
T Consensus 112 PGN~~~~~k~f~~~~Ytdeey~~el~~i~e~~~~~v~~ak~~~~~iRIG------vN~---------GSL~~~i~~~yg~ 176 (611)
T PRK02048 112 PGNYVDPGRTFKKLEYTDEEYAQEIQKIRDRFVPFLNICKENHTAIRIG------VNH---------GSLSDRIMSRYGD 176 (611)
T ss_pred CCcCCCccccccccccchhhhhhhhhhHHHHHHHHHHHHHHCCCCEEEe------cCC---------cCchHHHHHHhCC
Confidence 21 23321 11110 11223445543 122 33321 13
Q ss_pred hHHHHHHHHHhhhcccccCCCCCccccchhhhcCC-ceee-ccCcc--hHHHHHHHHHhhCC----CCCEEeEec---cc
Q psy15126 181 TLKRLADISKAFSDAVYVPNHNTDRFQARDVSQGA-DFLM-VKPAL--PYLDIISEVKSRHP----AYPLFVYQV---SG 249 (300)
Q Consensus 181 tl~~l~~~a~~~a~~~~~~~~n~~~~~~~Da~~GA-Divm-VkPsm--m~ld~Ir~~~d~~~----~vpi~aY~v---Sg 249 (300)
|-+.+++-|+.|+ ..=.+.|= |||+ +|-|. .++.+-|.+-.++. +.||.-.-. ++
T Consensus 177 tpe~mVeSAle~~--------------~i~e~~~f~diviS~KsS~~~~~V~AyRlLa~~l~~~g~dyPLHLGvTEAG~~ 242 (611)
T PRK02048 177 TPEGMVESCMEFL--------------RICVEEHFTDVVISIKASNTVVMVRTVRLLVAVMEAEGMHYPLHLGVTEAGDG 242 (611)
T ss_pred ChHHHHHHHHHHH--------------HHHHHCCCCcEEEEEEeCCcHHHHHHHHHHHHHHHhcCCCCceEEEEecCCCC
Confidence 6777888888874 33345555 4442 34442 26777777665532 688876544 77
Q ss_pred ccHHHHHHHhC
Q psy15126 250 EYAMLAFAAQA 260 (300)
Q Consensus 250 eY~~~r~Aa~~ 260 (300)
+=+.+|.|++.
T Consensus 243 edg~IKSAigi 253 (611)
T PRK02048 243 EDGRIKSAVGI 253 (611)
T ss_pred cCceehhHHHH
Confidence 77899999864
No 445
>PF13653 GDPD_2: Glycerophosphoryl diester phosphodiesterase family; PDB: 3RLG_A 2F9R_B 1XX1_A 3RLH_A.
Probab=21.13 E-value=97 Score=20.68 Aligned_cols=16 Identities=31% Similarity=0.299 Sum_probs=10.1
Q ss_pred HHHHHHcCCCEEEecc
Q psy15126 273 LTCLRRGGADVIISYY 288 (300)
Q Consensus 273 ~~~~~r~GAD~Ii~y~ 288 (300)
.+.+.++|+|-|||-+
T Consensus 13 ~~~~l~~GVDgI~Td~ 28 (30)
T PF13653_consen 13 WRELLDLGVDGIMTDY 28 (30)
T ss_dssp HHHHHHHT-SEEEES-
T ss_pred HHHHHHcCCCEeeCCC
Confidence 3444468999999954
No 446
>PF05582 Peptidase_U57: YabG peptidase U57; InterPro: IPR008764 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. The peptidases families associated with clan U- have an unknown catalytic mechanism as the protein fold of the active site domain and the active site residues have not been reported. This is a group of peptidases belong to MEROPS peptidase family U57 (clan U-). The type example is the YabG protein of Bacillus subtilis. This is a protease involved in the synthesis and maturation of the spore coat proteins SpoIVA and YrbA of B. subtilis [].
Probab=21.01 E-value=82 Score=30.97 Aligned_cols=26 Identities=12% Similarity=0.387 Sum_probs=20.1
Q ss_pred HHHHHHHHhCCCcEEEeeecCCCCCCCCcceeeCCC
Q psy15126 20 QVIPMIRKQFPSLTIACDVCLCGYTSHGHCAIFNED 55 (300)
Q Consensus 20 ~~i~~ik~~~p~l~i~~Dvclc~yt~hGHcgi~~~~ 55 (300)
+..+.+++--||++|+| ||+|++.+.
T Consensus 145 ~i~~Ll~~~~PDIlViT----------GHD~~~K~~ 170 (287)
T PF05582_consen 145 KIYRLLEEYRPDILVIT----------GHDGYLKNK 170 (287)
T ss_pred HHHHHHHHcCCCEEEEe----------CchhhhcCC
Confidence 45566667779999997 999999643
No 447
>COG1879 RbsB ABC-type sugar transport system, periplasmic component [Carbohydrate transport and metabolism]
Probab=20.97 E-value=2.6e+02 Score=25.62 Aligned_cols=35 Identities=20% Similarity=0.477 Sum_probs=30.3
Q ss_pred hhcCCceeeccCcch--HHHHHHHHHhhCCCCCEEeEec
Q psy15126 211 VSQGADFLMVKPALP--YLDIISEVKSRHPAYPLFVYQV 247 (300)
Q Consensus 211 a~~GADivmVkPsmm--~ld~Ir~~~d~~~~vpi~aY~v 247 (300)
+..|+|.|+|.|..+ ...+|+++.+. .+|++.+..
T Consensus 88 ia~~~daIiv~~~d~~~~~~~v~~a~~a--GIpVv~~d~ 124 (322)
T COG1879 88 IAQGVDAIIINPVDPDALTPAVKKAKAA--GIPVVTVDS 124 (322)
T ss_pred HHcCCCEEEEcCCChhhhHHHHHHHHHC--CCcEEEEec
Confidence 678999999999855 89999999997 688888876
No 448
>COG0329 DapA Dihydrodipicolinate synthase/N-acetylneuraminate lyase [Amino acid transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=20.89 E-value=2.6e+02 Score=26.67 Aligned_cols=41 Identities=17% Similarity=0.340 Sum_probs=29.8
Q ss_pred hhcCCceeeccCc-ch------HHHHHHHHHhhCCCCCEEeEecccccH
Q psy15126 211 VSQGADFLMVKPA-LP------YLDIISEVKSRHPAYPLFVYQVSGEYA 252 (300)
Q Consensus 211 a~~GADivmVkPs-mm------~ld~Ir~~~d~~~~vpi~aY~vSgeY~ 252 (300)
.+.|||-|||-|- .. .....+.+.+.- ++|++-|++-+.++
T Consensus 96 ~~~Gad~il~v~PyY~k~~~~gl~~hf~~ia~a~-~lPvilYN~P~~tg 143 (299)
T COG0329 96 EKLGADGILVVPPYYNKPSQEGLYAHFKAIAEAV-DLPVILYNIPSRTG 143 (299)
T ss_pred HhcCCCEEEEeCCCCcCCChHHHHHHHHHHHHhc-CCCEEEEeCccccC
Confidence 5789999998765 21 466677777775 89999999844333
No 449
>PF00218 IGPS: Indole-3-glycerol phosphate synthase; InterPro: IPR013798 Indole-3-glycerol phosphate synthase (4.1.1.48 from EC) (IGPS) catalyses the fourth step in the biosynthesis of tryptophan, the ring closure of 1-(2-carboxy-phenylamino)-1-deoxyribulose into indol-3-glycerol-phosphate. In some bacteria, IGPS is a single chain enzyme. In others, such as Escherichia coli, it is the N-terminal domain of a bifunctional enzyme that also catalyses N-(5'-phosphoribosyl)anthranilate isomerase (5.3.1.24 from EC) (PRAI) activity (see IPR001240 from INTERPRO), the third step of tryptophan biosynthesis. In fungi, IGPS is the central domain of a trifunctional enzyme that contains a PRAI C-terminal domain and a glutamine amidotransferase (2.4.2 from EC) (GATase) N-terminal domain (see IPR000991 from INTERPRO). A structure of the IGPS domain of the bifunctional enzyme from the mesophilic bacterium E. coli (eIGPS) has been compared with the monomeric indole-3-glycerol phosphate synthase from the hyperthermophilic archaeon Sulfolobus solfataricus (sIGPS). Both are single-domain (beta/alpha)8 barrel proteins, with one (eIGPS) or two (sIGPS) additional helices inserted before the first beta strand []. ; GO: 0004425 indole-3-glycerol-phosphate synthase activity; PDB: 1VC4_A 1PII_A 1JCM_P 1I4N_B 1J5T_A 3TSM_B 4FB7_A 3QJA_A 1JUL_A 2C3Z_A ....
Probab=20.85 E-value=3.3e+02 Score=25.86 Aligned_cols=188 Identities=19% Similarity=0.270 Sum_probs=104.4
Q ss_pred HHHHhCCCcEEEeeecCCCCCCCCcceeeCCCCceecHHhHHHHHHHHHHHHHcCCCcccc---CCCCcchHHHHHHHHh
Q psy15126 24 MIRKQFPSLTIACDVCLCGYTSHGHCAIFNEDGSIHYEKTLKRLADISKAFSDAGAHIVAP---SDMMDNRIHAIKQSLF 100 (300)
Q Consensus 24 ~ik~~~p~l~i~~Dvclc~yt~hGHcgi~~~~g~i~nd~Tl~~l~~~A~~~A~aGad~vAP---SdmMDgrv~air~aLd 100 (300)
+|++.-+.+.||+++--.+=+ -|.+.+ + -...++|..+.++||+.|+- .....|....+++.=.
T Consensus 40 aL~~~~~~~~vIAEiKraSPs----~G~i~~------~---~d~~~~a~~y~~~GA~aiSVlTe~~~F~Gs~~dL~~v~~ 106 (254)
T PF00218_consen 40 ALRQNEGRISVIAEIKRASPS----KGDIRE------D---FDPAEIAKAYEEAGAAAISVLTEPKFFGGSLEDLRAVRK 106 (254)
T ss_dssp HHHSHTSS-EEEEEE-SEETT----TEESBS------S----SHHHHHHHHHHTT-SEEEEE--SCCCHHHHHHHHHHHH
T ss_pred HHhcCCCCCeEEEEeecCCCC----CCccCc------c---CCHHHHHHHHHhcCCCEEEEECCCCCCCCCHHHHHHHHH
Confidence 344435679999998765522 244432 2 24578888999999999987 4567787777776654
Q ss_pred hCCCCCCcccccchhhhhcccchhhhhhhcCCCCCCCcceeeCC----CCCCceEEEEeecccCCCCCCccccccCCCcc
Q psy15126 101 TSRQSSTTGLLSYSAKFCSAFYGPFREAAGSAPTFGDRSCYQLP----CGSKGLAIRAAVCLCGYTSHGHCAIFNEDGSI 176 (300)
Q Consensus 101 ~~g~~~~v~ImsysaK~aS~~YGPfRda~gS~~~~gdr~~yQ~~----~~~~~~ai~~dvclc~yt~hGHcgi~~~~g~i 176 (300)
.-+ ++|+- +|=+ ---||+. .+..-+.++. .+
T Consensus 107 ~~~----~PvL~-------------KDFI--------id~~QI~eA~~~GADaVLLI~--------------------~~ 141 (254)
T PF00218_consen 107 AVD----LPVLR-------------KDFI--------IDPYQIYEARAAGADAVLLIA--------------------AI 141 (254)
T ss_dssp HSS----S-EEE-------------ES-----------SHHHHHHHHHTT-SEEEEEG--------------------GG
T ss_pred HhC----CCccc-------------ccCC--------CCHHHHHHHHHcCCCEeehhH--------------------Hh
Confidence 433 35651 0000 0123332 2222333343 36
Q ss_pred cchHhHHHHHHHHHhhhcccccCCCCCccccchhhhcCCceeeccCc---ch--HHHHHHHHHhhCCCCCEEeEeccccc
Q psy15126 177 HYEKTLKRLADISKAFSDAVYVPNHNTDRFQARDVSQGADFLMVKPA---LP--YLDIISEVKSRHPAYPLFVYQVSGEY 251 (300)
Q Consensus 177 ~nd~tl~~l~~~a~~~a~~~~~~~~n~~~~~~~Da~~GADivmVkPs---mm--~ld~Ir~~~d~~~~vpi~aY~vSgeY 251 (300)
..++.|+.|.+.|.++-=-+-|-.||...+.. -.+.||++|.|-=- .+ -+..-.++....|.- +..=+-||-
T Consensus 142 L~~~~l~~l~~~a~~lGle~lVEVh~~~El~~-al~~~a~iiGINnRdL~tf~vd~~~~~~l~~~ip~~-~~~iseSGI- 218 (254)
T PF00218_consen 142 LSDDQLEELLELAHSLGLEALVEVHNEEELER-ALEAGADIIGINNRDLKTFEVDLNRTEELAPLIPKD-VIVISESGI- 218 (254)
T ss_dssp SGHHHHHHHHHHHHHTT-EEEEEESSHHHHHH-HHHTT-SEEEEESBCTTTCCBHTHHHHHHHCHSHTT-SEEEEESS--
T ss_pred CCHHHHHHHHHHHHHcCCCeEEEECCHHHHHH-HHHcCCCEEEEeCccccCcccChHHHHHHHhhCccc-eeEEeecCC-
Confidence 78889999999999986666677777655433 24789999987653 12 344444444444322 222222443
Q ss_pred HHHHHHHhCCCCCHHHHHHHHHHHHHHcCCCEEEecc
Q psy15126 252 AMLAFAAQAGALDLKRALMETLTCLRRGGADVIISYY 288 (300)
Q Consensus 252 ~~~r~Aa~~~~~n~~eal~E~~~~~~r~GAD~Ii~y~ 288 (300)
-+. |-+..+++.|+|-+++--
T Consensus 219 -----------~~~-----~d~~~l~~~G~davLVGe 239 (254)
T PF00218_consen 219 -----------KTP-----EDARRLARAGADAVLVGE 239 (254)
T ss_dssp -----------SSH-----HHHHHHCTTT-SEEEESH
T ss_pred -----------CCH-----HHHHHHHHCCCCEEEECH
Confidence 333 334466778999988754
No 450
>PF01136 Peptidase_U32: Peptidase family U32 This is family U32 in the peptidase classification. ; InterPro: IPR001539 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. The peptidases families associated with clan U- have an unknown catalytic mechanism as the protein fold of the active site domain and the active site residues have not been reported. This is a group of peptidases belonging to MEROPS peptidase family U32 (clan U-). The type example is collagenase (gene prtC) from Porphyromonas gingivalis (Bacteroides gingivalis) [], which is an enzyme that degrades type I collagen and that seems to require a metal cofactor. The product of PrtC is evolutionary related to a number of uncharacterised proteins with a well conserved region containing two cysteines.; GO: 0008233 peptidase activity, 0006508 proteolysis
Probab=20.83 E-value=5.1e+02 Score=22.89 Aligned_cols=60 Identities=17% Similarity=0.156 Sum_probs=40.1
Q ss_pred hhcCCceeeccCcchHHHHHHHHHhhCCCCCEEeEecccccHHHHHHHhCCCCCHHHHHHHHHHHHHHcCCCEEEecchH
Q psy15126 211 VSQGADFLMVKPALPYLDIISEVKSRHPAYPLFVYQVSGEYAMLAFAAQAGALDLKRALMETLTCLRRGGADVIISYYTP 290 (300)
Q Consensus 211 a~~GADivmVkPsmm~ld~Ir~~~d~~~~vpi~aY~vSgeY~~~r~Aa~~~~~n~~eal~E~~~~~~r~GAD~Ii~y~A~ 290 (300)
.+.|.|-|||. -++.++-+++.+|+.+|.+=. ..+..|. +++.-+++.||+-|+.-+-+
T Consensus 12 ~~~g~dgi~v~----~~g~~~~~k~~~~~~~i~~~~------------~~nv~N~-----~s~~~~~~~G~~~i~ls~EL 70 (233)
T PF01136_consen 12 KELGVDGILVS----NPGLLELLKELGPDLKIIADY------------SLNVFNS-----ESARFLKELGASRITLSPEL 70 (233)
T ss_pred HhCCCCEEEEc----CHHHHHHHHHhCCCCcEEEec------------CccCCCH-----HHHHHHHHcCCCEEEECccC
Confidence 57899988775 677888888888889987653 3444554 33344445577777666654
Q ss_pred H
Q psy15126 291 R 291 (300)
Q Consensus 291 ~ 291 (300)
.
T Consensus 71 ~ 71 (233)
T PF01136_consen 71 S 71 (233)
T ss_pred C
Confidence 3
No 451
>PRK00286 xseA exodeoxyribonuclease VII large subunit; Reviewed
Probab=20.71 E-value=6.3e+02 Score=25.07 Aligned_cols=28 Identities=11% Similarity=0.184 Sum_probs=21.7
Q ss_pred HHHhCCCcEEEeeecCCCCCCCCcceee
Q psy15126 25 IRKQFPSLTIACDVCLCGYTSHGHCAIF 52 (300)
Q Consensus 25 ik~~~p~l~i~~Dvclc~yt~hGHcgi~ 52 (300)
|...|+++.|-..|.=+.+.+.|||-+-
T Consensus 19 le~~~~~v~v~gEis~~~~~~sGH~Yf~ 46 (438)
T PRK00286 19 LERDLGQVWVRGEISNFTRHSSGHWYFT 46 (438)
T ss_pred HHhhCCcEEEEEEeCCCeeCCCCeEEEE
Confidence 3344899999999887766678999854
No 452
>PF01076 Mob_Pre: Plasmid recombination enzyme; InterPro: IPR001668 With some plasmids, recombination can occur in a site specific manner that is independent of RecA. In such cases, the recombination event requires another protein called Pre. Pre is a plasmid recombination enzyme. This protein is also known as Mob (conjugative mobilisation) [].; GO: 0003677 DNA binding, 0006310 DNA recombination, 0005727 extrachromosomal circular DNA
Probab=20.65 E-value=1.5e+02 Score=26.54 Aligned_cols=37 Identities=14% Similarity=0.146 Sum_probs=32.8
Q ss_pred hHHHHHHHHHHhCC-CcEEEeeecCCCCCCCCcceeeC
Q psy15126 17 PLFQVIPMIRKQFP-SLTIACDVCLCGYTSHGHCAIFN 53 (300)
Q Consensus 17 ~~~~~i~~ik~~~p-~l~i~~Dvclc~yt~hGHcgi~~ 53 (300)
.+..++..++++|| +-++.+-|-++|=|-|=|..++-
T Consensus 103 ~~~~~~~~~~~r~g~~ni~~a~vH~DE~tPH~H~~~vP 140 (196)
T PF01076_consen 103 WFEDSLEWLQERYGNENIVSAVVHLDETTPHMHFDVVP 140 (196)
T ss_pred HHHHHHHHHHHHCCchhEEEEEEECCCCCcceEEEEee
Confidence 46678889999999 68888999999999999999983
No 453
>PF00016 RuBisCO_large: Ribulose bisphosphate carboxylase large chain, catalytic domain; InterPro: IPR000685 Ribulose bisphosphate carboxylase (RuBisCO) [, ] catalyses the initial step in Calvin's reductive pentose phosphate cycle in plants as well as purple and green bacteria. It consists of a large catalytic unit and a small subunit of undetermined function. In plants, the large subunit is coded by the chloroplastic genome while the small subunit is encoded in the nuclear genome. Molecular activation of RuBisCO by CO2 involves the formation of a carbamate with the epsilon-amino group of a conserved lysine residue. This carbamate is stabilised by a magnesium ion. One of the ligands of the magnesium ion is an aspartic acid residue close to the active site lysine [].; GO: 0000287 magnesium ion binding, 0016984 ribulose-bisphosphate carboxylase activity, 0015977 carbon fixation, 0009536 plastid; PDB: 3AXM_A 1WDD_A 3AXK_A 1SVD_A 1RXO_B 1UPP_C 1UPM_R 1RCO_L 8RUC_G 1RCX_B ....
Probab=20.61 E-value=4.3e+02 Score=26.00 Aligned_cols=75 Identities=17% Similarity=0.342 Sum_probs=41.2
Q ss_pred HhHHHHHHHHHhhhcccccCCCCCccccchhhhcCCceeecc-------Cc-ch---HHHHHHHH----HhhCCCCCEEe
Q psy15126 180 KTLKRLADISKAFSDAVYVPNHNTDRFQARDVSQGADFLMVK-------PA-LP---YLDIISEV----KSRHPAYPLFV 244 (300)
Q Consensus 180 ~tl~~l~~~a~~~a~~~~~~~~n~~~~~~~Da~~GADivmVk-------Ps-mm---~ld~Ir~~----~d~~~~vpi~a 244 (300)
-|.+.+++++..+ +..|.|+| | |. .+ ++..+.++ .++.-...+.+
T Consensus 27 lsp~~~a~~~y~~------------------a~GG~D~I--KDDE~l~~q~f~p~~eRv~~~~~a~~~a~~eTG~~~ly~ 86 (309)
T PF00016_consen 27 LSPEELAELAYEF------------------ALGGVDFI--KDDENLANQPFCPFEERVPACMEAVDRAEEETGEKKLYA 86 (309)
T ss_dssp S-HHHHHHHHHHH------------------HHTTSSEE--EE-TT-SSBTTBEHHHHHHHHHHHHHHHHHHHSS--EEE
T ss_pred ecccchhhHHHhh------------------hhccccee--cccccccCcccccHhHhHHhhhhhhhccccccceeccee
Confidence 3678899998888 68899998 7 33 33 44444444 44432233444
Q ss_pred EecccccHHHHHHHhCCCCCHHHHHHHHHHHHHHcCCCEEEecc
Q psy15126 245 YQVSGEYAMLAFAAQAGALDLKRALMETLTCLRRGGADVIISYY 288 (300)
Q Consensus 245 Y~vSgeY~~~r~Aa~~~~~n~~eal~E~~~~~~r~GAD~Ii~y~ 288 (300)
-++++- +. +-++|-..-.+++|++.+|+-+
T Consensus 87 ~NiT~~-------------~~-~em~~ra~~a~~~G~~~vmv~~ 116 (309)
T PF00016_consen 87 ANITAD-------------TP-DEMIERAEYAKEAGANAVMVNV 116 (309)
T ss_dssp EEE-SS-------------SH-HHHHHHHHHHHHHTGSEEEEEH
T ss_pred cccccc-------------cH-HHHHHhhhhhhhhccchhhccc
Confidence 444321 11 2233333444468999888865
No 454
>cd07405 MPP_UshA_N Escherichia coli UshA and related proteins, N-terminal metallophosphatase domain. UshA is a bacterial periplasmic enzyme with UDP-sugar hydrolase and dinucleoside-polyphosphate hydrolase activities associated with its N-terminal metallophosphatase domain, and 5'-nucleotidase activity associated with its C-terminal domain. UshA has been studied in Escherichia coli where it is expressed from the ushA gene as an immature precursor and proteolytically cleaved to form a mature product upon export to the periplasm. UshA hydrolyzes many different nucleotides and nucleotide derivitives and has been shown to degrade external UDP-glucose to uridine, glucose 1-phosphate and phosphate for utilization by the cell. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs
Probab=20.52 E-value=1.1e+02 Score=28.54 Aligned_cols=27 Identities=15% Similarity=0.118 Sum_probs=21.2
Q ss_pred CCCHHHHHHHHHHHHHHcCCCEEEecc
Q psy15126 262 ALDLKRALMETLTCLRRGGADVIISYY 288 (300)
Q Consensus 262 ~~n~~eal~E~~~~~~r~GAD~Ii~y~ 288 (300)
+.|.-+++.+....+|.+|||+||+-.
T Consensus 155 f~d~~~~~~~~v~~lk~~~~D~VI~ls 181 (285)
T cd07405 155 FRPPIHEAKEVVPELKQEKPDIVIAAT 181 (285)
T ss_pred EcCHHHHHHHHHHHHHHcCCCEEEEEe
Confidence 346777888888889667999999864
No 455
>TIGR00237 xseA exodeoxyribonuclease VII, large subunit. This family consist of exodeoxyribonuclease VII, large subunit XseA which catalyses exonucleolytic cleavage in either the 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. Exonuclease VII consists of one large subunit and four small subunits.
Probab=20.47 E-value=6.1e+02 Score=25.58 Aligned_cols=28 Identities=14% Similarity=0.171 Sum_probs=23.1
Q ss_pred HHHhCCCcEEEeeecCCCCCCCCcceee
Q psy15126 25 IRKQFPSLTIACDVCLCGYTSHGHCAIF 52 (300)
Q Consensus 25 ik~~~p~l~i~~Dvclc~yt~hGHcgi~ 52 (300)
|...||++.|-..|.=+.+.+.|||-+-
T Consensus 13 le~~~~~v~V~GEisn~~~~~sGH~YFt 40 (432)
T TIGR00237 13 LEATFLQVWIQGEISNFTQPVSGHWYFT 40 (432)
T ss_pred HHhhCCcEEEEEEecCCeeCCCceEEEE
Confidence 3445999999999998887788999865
No 456
>cd02930 DCR_FMN 2,4-dienoyl-CoA reductase (DCR) FMN-binding domain. DCR in E. coli is an iron-sulfur flavoenzyme which contains FMN, FAD, and a 4Fe-4S cluster. It is also a monomer, unlike that of its eukaryotic counterparts which form homotetramers and lack the flavin and iron-sulfur cofactors. Metabolism of unsaturated fatty acids requires auxiliary enzymes in addition to those used in b-oxidation. After a given number of cycles through the b-oxidation pathway, those unsaturated fatty acyl-CoAs with double bonds at even-numbered carbon positions contain 2-trans, 4-cis double bonds that can not be modified by enoyl-CoA hydratase. DCR utilizes NADPH to remove the C4-C5 double bond. DCR can catalyze the reduction of both natural fatty acids with cis double bonds, as well as substrates containing trans double bonds. The reaction is initiated by hybrid transfer from NADPH to FAD, which in turn transfers electrons, one at a time, to FMN via the 4Fe-4S cluster. The fully reduced FMN provi
Probab=20.29 E-value=2.2e+02 Score=27.55 Aligned_cols=70 Identities=19% Similarity=0.244 Sum_probs=45.3
Q ss_pred CCcccccCCCCCChHHHHHHHHHHhCC-CcEEEeeecCCCCCCCCcceeeCCCCceecHHhHHHHHHHHHHHHHcCCCcc
Q psy15126 4 RDETASFADTPDNPLFQVIPMIRKQFP-SLTIACDVCLCGYTSHGHCAIFNEDGSIHYEKTLKRLADISKAFSDAGAHIV 82 (300)
Q Consensus 4 kd~~~s~a~~~~~~~~~~i~~ik~~~p-~l~i~~Dvclc~yt~hGHcgi~~~~g~i~nd~Tl~~l~~~A~~~A~aGad~v 82 (300)
.|+.|-.-.|.--.+.+.++.||+.++ ++.|..=+....|. ++| .|++...+.+..+.++|+|.|
T Consensus 176 tD~yGGslenR~r~~~eiv~aIR~~vG~d~~v~iRi~~~D~~---------~~g-----~~~~e~~~i~~~Le~~G~d~i 241 (353)
T cd02930 176 TDEWGGSFENRMRFPVEIVRAVRAAVGEDFIIIYRLSMLDLV---------EGG-----STWEEVVALAKALEAAGADIL 241 (353)
T ss_pred cCccCCCHHHHhHHHHHHHHHHHHHcCCCceEEEEecccccC---------CCC-----CCHHHHHHHHHHHHHcCCCEE
Confidence 355554444455677789999999995 67766333322221 112 245666788888889999999
Q ss_pred ccCCC
Q psy15126 83 APSDM 87 (300)
Q Consensus 83 APSdm 87 (300)
..|..
T Consensus 242 ~vs~g 246 (353)
T cd02930 242 NTGIG 246 (353)
T ss_pred EeCCC
Confidence 87654
No 457
>PF01729 QRPTase_C: Quinolinate phosphoribosyl transferase, C-terminal domain; InterPro: IPR002638 Quinolinate phosphoribosyl transferase (QPRTase) or nicotinate-nucleotide pyrophosphorylase 2.4.2.19 from EC is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to give rise to nicotinic acid mononucleotide (NaMN), pyrophosphate and carbon dioxide [, ]. Unlike IPR004393 from INTERPRO, this domain also includes the molybdenum transport system protein ModD.; GO: 0004514 nicotinate-nucleotide diphosphorylase (carboxylating) activity, 0009435 NAD biosynthetic process; PDB: 3C2O_A 3C2F_A 3C2E_A 3C2R_A 3C2V_A 1QPN_E 1QPO_A 1QPQ_F 1QPR_E 2I14_D ....
Probab=20.18 E-value=2e+02 Score=25.54 Aligned_cols=60 Identities=17% Similarity=0.238 Sum_probs=45.5
Q ss_pred HHHHHHHHHHhCCCcE-EEeeecCCCCCCCCcceeeCCCCceecHHhHHHHHHHHHHHHHcCCCccccCCCCcchHHHHH
Q psy15126 18 LFQVIPMIRKQFPSLT-IACDVCLCGYTSHGHCAIFNEDGSIHYEKTLKRLADISKAFSDAGAHIVAPSDMMDNRIHAIK 96 (300)
Q Consensus 18 ~~~~i~~ik~~~p~l~-i~~Dvclc~yt~hGHcgi~~~~g~i~nd~Tl~~l~~~A~~~A~aGad~vAPSdmMDgrv~air 96 (300)
+.++++.+|+.+|... |..+| +| .+++.+++++|+|+|-.-.|-...+..+.
T Consensus 66 i~~av~~~~~~~~~~~~I~VEv--------------------~~-------~ee~~ea~~~g~d~I~lD~~~~~~~~~~v 118 (169)
T PF01729_consen 66 IEEAVKAARQAAPEKKKIEVEV--------------------EN-------LEEAEEALEAGADIIMLDNMSPEDLKEAV 118 (169)
T ss_dssp HHHHHHHHHHHSTTTSEEEEEE--------------------SS-------HHHHHHHHHTT-SEEEEES-CHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCceEEEEc--------------------CC-------HHHHHHHHHhCCCEEEecCcCHHHHHHHH
Confidence 7789999999998865 54443 12 25778888999999999888888888888
Q ss_pred HHHhhCCC
Q psy15126 97 QSLFTSRQ 104 (300)
Q Consensus 97 ~aLd~~g~ 104 (300)
+.|+..+-
T Consensus 119 ~~l~~~~~ 126 (169)
T PF01729_consen 119 EELRELNP 126 (169)
T ss_dssp HHHHHHTT
T ss_pred HHHhhcCC
Confidence 88866655
No 458
>COG0151 PurD Phosphoribosylamine-glycine ligase [Nucleotide transport and metabolism]
Probab=20.17 E-value=5.2e+02 Score=26.91 Aligned_cols=48 Identities=17% Similarity=0.251 Sum_probs=31.5
Q ss_pred hhcCCceeeccCcch----HHHHHHH------------------------HHhhCCCCCEEeEecccccHHHHHHHh
Q psy15126 211 VSQGADFLMVKPALP----YLDIISE------------------------VKSRHPAYPLFVYQVSGEYAMLAFAAQ 259 (300)
Q Consensus 211 a~~GADivmVkPsmm----~ld~Ir~------------------------~~d~~~~vpi~aY~vSgeY~~~r~Aa~ 259 (300)
.+.+.|+++|.|-.+ -+|..|+ ...+| ++|...|.+-......++.++
T Consensus 60 ~~~~idl~vVGPE~pL~~GvvD~l~~~Gi~vFGPsk~AA~lE~SK~faK~fm~k~-~IPta~y~~f~~~e~a~ayi~ 135 (428)
T COG0151 60 KEKNVDLVVVGPEAPLVAGVVDALRAAGIPVFGPTKAAAQLEGSKAFAKDFMKKY-GIPTAEYEVFTDPEEAKAYID 135 (428)
T ss_pred HHcCCCEEEECCcHHHhhhhHHHHHHCCCceeCcCHHHHHHHhhHHHHHHHHHHc-CCCcccccccCCHHHHHHHHH
Confidence 457888888888755 4555544 33346 788888888446666666653
No 459
>COG0407 HemE Uroporphyrinogen-III decarboxylase [Coenzyme metabolism]
Probab=20.15 E-value=2e+02 Score=28.76 Aligned_cols=40 Identities=20% Similarity=0.302 Sum_probs=27.4
Q ss_pred chhhhcCCceeeccCc------ch---------HHHHHHHHHhhCCCCCEEeEec
Q psy15126 208 ARDVSQGADFLMVKPA------LP---------YLDIISEVKSRHPAYPLFVYQV 247 (300)
Q Consensus 208 ~~Da~~GADivmVkPs------mm---------~ld~Ir~~~d~~~~vpi~aY~v 247 (300)
...+++|||.|.+-=| +. .-.++++++...+.+||+-...
T Consensus 196 ~~qi~aGAdavqifDsW~g~l~~~~~~~f~~~~~~~i~~~vk~~~~~~pii~f~~ 250 (352)
T COG0407 196 KAQIEAGADAVQIFDSWAGVLSMIDYDEFVLPYMKRIVREVKEVKGGVPVIHFCK 250 (352)
T ss_pred HHHHHhCCCEEEeeccccccCCcccHHHHhhhHHHHHHHHHHHhCCCCcEEEECC
Confidence 5569999999976433 21 2456677776666688887755
No 460
>cd08206 RuBisCO_large_I_II_III Ribulose bisphosphate carboxylase large chain, Form I,II,III. Ribulose bisphosphate carboxylase (Rubisco) plays an important role in the Calvin reductive pentose phosphate pathway. It catalyzes the primary CO2 fixation step. Rubisco is activated by carbamylation of an active site lysine, stabilized by a divalent cation, which then catalyzes the proton abstraction from the substrate ribulose 1,5 bisphosphate (RuBP) and leads to the formation of two molecules of 3-phosphoglycerate. Members of the Rubisco family can be divided into 4 subgroups, Form I-IV, which differ in their taxonomic distribution and subunit composition. Form I-III have Rubisco activity, while Form IV, also called Rubico-like proteins (RLP), are missing critical active site residues.
Probab=20.12 E-value=7.5e+02 Score=25.32 Aligned_cols=84 Identities=11% Similarity=0.140 Sum_probs=49.2
Q ss_pred hHHHHHHHHHhhhcccccCCCCCccccchhhhcCCceeeccCc--------ch---HHHHHHHHH----hhCCCCCEEeE
Q psy15126 181 TLKRLADISKAFSDAVYVPNHNTDRFQARDVSQGADFLMVKPA--------LP---YLDIISEVK----SRHPAYPLFVY 245 (300)
Q Consensus 181 tl~~l~~~a~~~a~~~~~~~~n~~~~~~~Da~~GADivmVkPs--------mm---~ld~Ir~~~----d~~~~vpi~aY 245 (300)
|-+.+++++..+ +.-|.|+| |=. ++ ++..+.++. ++.-...+.+-
T Consensus 146 sp~~~a~~~y~~------------------~~GGiD~I--KDDE~l~~q~~~p~~eRv~~~~~a~~~a~~eTG~~~~y~~ 205 (414)
T cd08206 146 SPKEYARVVYEA------------------LRGGLDFV--KDDENQNSQPFMRFEDRILFVAEAMDKAEAETGEAKGHYL 205 (414)
T ss_pred CHHHHHHHHHHH------------------HhcCCccc--ccCccCCCCCCCcHHHHHHHHHHHHHHHHHhhCCcceEEe
Confidence 567888888887 68999998 732 22 444444443 33323444444
Q ss_pred ecccccHHHHHHHhCCCCCHHHHHHHHHHHHHHcCCCEEEecc---hHHHHHHHhh
Q psy15126 246 QVSGEYAMLAFAAQAGALDLKRALMETLTCLRRGGADVIISYY---TPRVLEWLRE 298 (300)
Q Consensus 246 ~vSgeY~~~r~Aa~~~~~n~~eal~E~~~~~~r~GAD~Ii~y~---A~~~ld~l~~ 298 (300)
++|+. +. +-++|-..-.+++|+..+|+-+ +...++.|++
T Consensus 206 NiT~~-------------~~-~em~~ra~~~~~~G~~~~mv~~~~~G~~~l~~l~~ 247 (414)
T cd08206 206 NITAD-------------TP-EEMIKRAEFAKELGSVIVMVDGVTAGWTAIQSARR 247 (414)
T ss_pred ccCCC-------------cH-HHHHHHHHHHHHhCCcEEEEeeecccHHHHHHHHH
Confidence 45543 02 2334444444578999998875 4555666654
Done!