Query psy15126
Match_columns 300
No_of_seqs 195 out of 1605
Neff 3.5
Searched_HMMs 29240
Date Fri Aug 16 21:15:41 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy15126.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/15126hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1h7n_A 5-aminolaevulinic acid 100.0 1E-106 4E-111 766.4 21.0 245 3-299 97-341 (342)
2 1pv8_A Delta-aminolevulinic ac 100.0 5E-107 2E-111 765.8 17.3 243 3-298 86-329 (330)
3 1w1z_A Delta-aminolevulinic ac 100.0 2E-106 6E-111 761.0 20.9 241 2-297 88-328 (328)
4 1w5q_A Delta-aminolevulinic ac 100.0 3E-106 1E-110 761.7 18.8 242 3-299 93-336 (337)
5 3obk_A Delta-aminolevulinic ac 100.0 8E-106 3E-110 762.6 19.2 244 2-299 99-344 (356)
6 1l6s_A Porphobilinogen synthas 100.0 1E-104 4E-109 747.4 19.4 240 2-297 82-321 (323)
7 1w5q_A Delta-aminolevulinic ac 100.0 9.8E-52 3.3E-56 390.6 6.4 189 59-299 60-272 (337)
8 1w1z_A Delta-aminolevulinic ac 100.0 8.1E-52 2.8E-56 390.0 5.1 188 59-299 58-265 (328)
9 1pv8_A Delta-aminolevulinic ac 100.0 1.1E-51 3.7E-56 389.7 5.1 189 59-299 53-264 (330)
10 1h7n_A 5-aminolaevulinic acid 100.0 2.7E-51 9.1E-56 388.4 7.0 189 59-299 63-275 (342)
11 3obk_A Delta-aminolevulinic ac 100.0 4.6E-51 1.6E-55 387.9 6.5 189 59-299 67-279 (356)
12 1l6s_A Porphobilinogen synthas 100.0 2.8E-51 9.5E-56 385.8 2.7 188 59-299 52-258 (323)
13 1zlp_A PSR132, petal death pro 95.7 0.22 7.6E-06 46.9 14.1 160 18-280 88-279 (318)
14 2qiw_A PEP phosphonomutase; st 95.4 0.075 2.6E-06 48.3 9.5 81 180-281 165-255 (255)
15 3f4w_A Putative hexulose 6 pho 94.5 0.092 3.2E-06 44.1 7.0 63 19-104 41-104 (211)
16 2ze3_A DFA0005; organic waste 94.0 1 3.6E-05 41.3 13.5 168 18-280 64-254 (275)
17 3fa4_A 2,3-dimethylmalate lyas 94.0 1 3.4E-05 42.2 13.6 70 211-281 180-262 (302)
18 4e38_A Keto-hydroxyglutarate-a 93.8 0.068 2.3E-06 48.2 5.2 35 211-245 144-180 (232)
19 3lye_A Oxaloacetate acetyl hyd 93.4 1.3 4.3E-05 41.6 13.3 70 211-281 188-270 (307)
20 3lab_A Putative KDPG (2-keto-3 93.2 0.16 5.5E-06 45.6 6.5 35 211-245 129-165 (217)
21 3dz1_A Dihydrodipicolinate syn 92.6 0.8 2.7E-05 42.0 10.4 82 170-288 20-110 (313)
22 1vhc_A Putative KHG/KDPG aldol 92.5 1.1 3.6E-05 39.7 10.7 35 211-245 127-163 (224)
23 3nav_A Tryptophan synthase alp 92.4 0.12 4E-06 47.4 4.6 19 227-245 85-105 (271)
24 3eb2_A Putative dihydrodipicol 92.4 0.58 2E-05 42.7 9.2 81 170-287 16-106 (300)
25 3qze_A DHDPS, dihydrodipicolin 91.7 1.2 4E-05 41.1 10.5 82 170-288 35-126 (314)
26 1xky_A Dihydrodipicolinate syn 91.7 1.4 4.7E-05 40.2 10.8 81 170-287 24-114 (301)
27 3na8_A Putative dihydrodipicol 91.5 1.5 5.3E-05 40.3 11.0 82 170-288 36-127 (315)
28 4af0_A Inosine-5'-monophosphat 91.4 0.41 1.4E-05 48.5 7.6 58 211-288 290-351 (556)
29 2wkj_A N-acetylneuraminate lya 91.3 1.3 4.6E-05 40.4 10.3 80 170-286 23-112 (303)
30 3i4e_A Isocitrate lyase; struc 91.3 1.8 6.1E-05 42.8 11.8 40 211-252 281-324 (439)
31 1f6k_A N-acetylneuraminate lya 91.1 1.5 5.2E-05 39.6 10.4 81 170-287 15-106 (293)
32 3fkr_A L-2-keto-3-deoxyarabona 91.0 1.7 5.7E-05 39.9 10.6 81 170-287 20-110 (309)
33 2r8w_A AGR_C_1641P; APC7498, d 90.9 1.2 4.2E-05 41.3 9.9 81 170-287 46-136 (332)
34 3flu_A DHDPS, dihydrodipicolin 90.9 2 7E-05 39.0 11.1 82 170-288 19-110 (297)
35 3b4u_A Dihydrodipicolinate syn 90.9 1.3 4.5E-05 40.2 9.8 81 170-287 15-105 (294)
36 3tak_A DHDPS, dihydrodipicolin 90.8 1.8 6.2E-05 39.1 10.6 82 170-288 13-104 (291)
37 3cpr_A Dihydrodipicolinate syn 90.8 1.9 6.6E-05 39.3 10.9 81 170-287 28-118 (304)
38 2ojp_A DHDPS, dihydrodipicolin 90.6 1.3 4.3E-05 40.2 9.4 81 170-287 13-103 (292)
39 3si9_A DHDPS, dihydrodipicolin 90.4 2.2 7.4E-05 39.4 10.9 81 170-287 34-124 (315)
40 3s5o_A 4-hydroxy-2-oxoglutarat 90.3 2.3 7.9E-05 38.9 10.9 80 170-286 26-115 (307)
41 3hzh_A Chemotaxis response reg 90.2 3.1 0.00011 32.1 10.1 78 201-297 68-152 (157)
42 3l21_A DHDPS, dihydrodipicolin 90.0 2.1 7.3E-05 39.1 10.5 82 170-288 27-118 (304)
43 3qfe_A Putative dihydrodipicol 90.0 2.1 7.2E-05 39.4 10.5 81 170-287 22-113 (318)
44 2v9d_A YAGE; dihydrodipicolini 89.9 2 6.7E-05 40.2 10.3 81 170-287 43-133 (343)
45 3d0c_A Dihydrodipicolinate syn 89.5 1.9 6.5E-05 39.6 9.7 79 171-287 25-113 (314)
46 3eol_A Isocitrate lyase; seatt 89.5 4.2 0.00014 40.0 12.6 71 211-290 276-350 (433)
47 3a5f_A Dihydrodipicolinate syn 89.3 2.9 0.0001 37.7 10.7 62 211-287 32-103 (291)
48 1mxs_A KDPG aldolase; 2-keto-3 89.0 2.5 8.5E-05 37.3 9.8 35 211-245 136-172 (225)
49 1xg4_A Probable methylisocitra 89.0 2.9 9.8E-05 38.8 10.5 43 182-244 166-208 (295)
50 1wbh_A KHG/KDPG aldolase; lyas 89.0 3.1 0.00011 36.3 10.2 35 211-245 126-162 (214)
51 3ovp_A Ribulose-phosphate 3-ep 88.8 1.9 6.5E-05 38.0 8.9 42 226-287 156-197 (228)
52 3ih1_A Methylisocitrate lyase; 88.7 3.2 0.00011 38.8 10.7 78 182-281 174-266 (305)
53 1rqb_A Transcarboxylase 5S sub 88.5 12 0.00042 37.5 15.4 47 181-245 173-226 (539)
54 1o5k_A DHDPS, dihydrodipicolin 88.4 2.8 9.7E-05 38.2 10.0 80 170-287 25-114 (306)
55 3m5v_A DHDPS, dihydrodipicolin 88.3 2.6 9.1E-05 38.3 9.7 79 172-287 21-110 (301)
56 3inp_A D-ribulose-phosphate 3- 88.2 4.9 0.00017 36.2 11.3 61 20-104 75-135 (246)
57 2ehh_A DHDPS, dihydrodipicolin 88.0 3 0.0001 37.7 9.8 62 211-287 31-102 (294)
58 1m3u_A 3-methyl-2-oxobutanoate 87.8 7.3 0.00025 35.9 12.4 137 19-247 66-204 (264)
59 3lg3_A Isocitrate lyase; conse 87.8 10 0.00035 37.4 14.1 69 211-288 281-353 (435)
60 2yxg_A DHDPS, dihydrodipicolin 87.6 3.1 0.00011 37.5 9.6 80 170-287 13-102 (289)
61 3vnd_A TSA, tryptophan synthas 87.3 1.2 4.2E-05 40.5 6.9 34 211-244 42-100 (267)
62 4fo4_A Inosine 5'-monophosphat 87.2 1.3 4.6E-05 42.0 7.3 56 211-286 117-176 (366)
63 3b4u_A Dihydrodipicolinate syn 87.1 6.6 0.00023 35.5 11.6 37 211-247 95-141 (294)
64 2wkj_A N-acetylneuraminate lya 87.0 4.5 0.00015 36.9 10.5 37 211-247 103-146 (303)
65 2nx9_A Oxaloacetate decarboxyl 87.0 22 0.00076 34.8 15.9 46 181-245 156-207 (464)
66 1xky_A Dihydrodipicolinate syn 86.9 6.9 0.00024 35.6 11.6 36 211-247 104-146 (301)
67 1f8m_A Isocitrate lyase, ICL; 86.8 7.3 0.00025 38.3 12.4 40 211-252 277-320 (429)
68 1oy0_A Ketopantoate hydroxymet 86.6 20 0.00067 33.3 14.6 166 19-276 83-265 (281)
69 3h5d_A DHDPS, dihydrodipicolin 86.6 5.5 0.00019 36.5 10.9 81 170-287 19-110 (311)
70 2vc6_A MOSA, dihydrodipicolina 86.6 4 0.00014 36.9 9.8 79 172-287 14-102 (292)
71 1qop_A Tryptophan synthase alp 86.5 1.9 6.6E-05 38.3 7.6 35 211-245 41-102 (268)
72 2rfg_A Dihydrodipicolinate syn 86.4 3.9 0.00013 37.2 9.7 79 172-287 14-102 (297)
73 2ekc_A AQ_1548, tryptophan syn 86.3 3.7 0.00013 36.5 9.3 34 211-244 41-99 (262)
74 3eb2_A Putative dihydrodipicol 86.1 6 0.0002 36.0 10.7 36 211-247 96-138 (300)
75 4fxs_A Inosine-5'-monophosphat 86.0 1.3 4.5E-05 43.2 6.7 56 211-286 240-299 (496)
76 3na8_A Putative dihydrodipicol 85.9 8.8 0.0003 35.2 11.9 79 14-111 11-97 (315)
77 3e96_A Dihydrodipicolinate syn 85.7 4.8 0.00016 36.9 10.0 80 170-287 23-113 (316)
78 4avf_A Inosine-5'-monophosphat 85.5 2.8 9.4E-05 40.9 8.7 56 211-286 238-297 (490)
79 3flu_A DHDPS, dihydrodipicolin 85.4 8.9 0.0003 34.7 11.5 36 211-247 99-141 (297)
80 3qze_A DHDPS, dihydrodipicolin 85.3 7.9 0.00027 35.5 11.2 36 211-247 115-157 (314)
81 1o66_A 3-methyl-2-oxobutanoate 85.3 16 0.00054 33.9 13.2 65 19-104 66-132 (275)
82 2v9d_A YAGE; dihydrodipicolini 85.3 7.6 0.00026 36.2 11.3 36 211-247 123-165 (343)
83 3f6c_A Positive transcription 85.2 3.6 0.00012 30.2 7.4 48 200-247 32-82 (134)
84 4e7p_A Response regulator; DNA 84.9 4.7 0.00016 30.6 8.1 37 211-247 63-102 (150)
85 3fkr_A L-2-keto-3-deoxyarabona 84.7 9.8 0.00033 34.8 11.5 36 211-247 100-145 (309)
86 3l21_A DHDPS, dihydrodipicolin 84.7 7.6 0.00026 35.4 10.8 36 211-247 107-149 (304)
87 3tak_A DHDPS, dihydrodipicolin 84.7 8.5 0.00029 34.7 11.0 36 211-247 93-135 (291)
88 3si9_A DHDPS, dihydrodipicolin 84.5 10 0.00035 34.8 11.7 36 211-247 114-156 (315)
89 3dz1_A Dihydrodipicolinate syn 84.4 9.1 0.00031 35.0 11.2 52 53-111 21-80 (313)
90 3cpr_A Dihydrodipicolinate syn 84.3 11 0.00037 34.3 11.6 36 211-247 108-150 (304)
91 2ojp_A DHDPS, dihydrodipicolin 84.3 8 0.00027 34.9 10.6 36 211-247 93-135 (292)
92 2nuw_A 2-keto-3-deoxygluconate 84.1 6.8 0.00023 35.3 10.1 78 170-286 11-97 (288)
93 4dpp_A DHDPS 2, dihydrodipicol 84.0 8 0.00027 36.8 10.9 81 170-287 71-161 (360)
94 3s5o_A 4-hydroxy-2-oxoglutarat 84.0 8 0.00027 35.3 10.6 47 53-103 27-81 (307)
95 3eod_A Protein HNR; response r 83.6 4.1 0.00014 29.8 7.1 59 212-289 49-110 (130)
96 3d0c_A Dihydrodipicolinate syn 83.4 13 0.00044 34.0 11.8 38 211-249 103-147 (314)
97 3jte_A Response regulator rece 83.4 9.5 0.00033 28.3 9.1 58 212-288 47-107 (143)
98 1f6k_A N-acetylneuraminate lya 83.0 9 0.00031 34.5 10.4 36 211-247 96-138 (293)
99 4e38_A Keto-hydroxyglutarate-a 82.9 6.4 0.00022 35.3 9.3 55 211-290 103-157 (232)
100 3vav_A 3-methyl-2-oxobutanoate 82.9 24 0.00081 32.7 13.3 139 19-247 78-216 (275)
101 3eul_A Possible nitrate/nitrit 82.7 5.4 0.00019 30.2 7.6 60 201-260 48-110 (152)
102 1w3i_A EDA, 2-keto-3-deoxy glu 82.6 7.9 0.00027 35.0 9.9 78 170-286 11-97 (293)
103 2r8w_A AGR_C_1641P; APC7498, d 82.6 11 0.00038 34.9 11.0 36 211-247 126-168 (332)
104 3daq_A DHDPS, dihydrodipicolin 82.5 8.6 0.00029 34.7 10.1 63 211-288 33-105 (292)
105 2gzm_A Glutamate racemase; enz 82.3 26 0.00088 31.0 13.4 67 21-99 18-88 (267)
106 3eqz_A Response regulator; str 82.2 3.1 0.00011 30.3 5.9 33 215-247 47-82 (135)
107 2hmc_A AGR_L_411P, dihydrodipi 82.2 6.3 0.00022 36.9 9.3 78 170-286 38-124 (344)
108 1wa3_A 2-keto-3-deoxy-6-phosph 82.1 5.9 0.0002 32.8 8.3 36 210-245 120-156 (205)
109 3usb_A Inosine-5'-monophosphat 81.7 4.7 0.00016 39.5 8.6 56 211-286 265-324 (511)
110 3hdg_A Uncharacterized protein 81.6 4.9 0.00017 29.7 6.8 59 211-288 48-109 (137)
111 3lua_A Response regulator rece 81.5 9.4 0.00032 28.3 8.4 57 213-288 49-111 (140)
112 1o5k_A DHDPS, dihydrodipicolin 80.5 14 0.00048 33.6 10.8 36 211-247 104-146 (306)
113 3r2g_A Inosine 5'-monophosphat 80.4 3.6 0.00012 39.2 7.1 56 211-286 109-168 (361)
114 3lab_A Putative KDPG (2-keto-3 80.4 5.7 0.0002 35.5 8.0 56 211-291 82-143 (217)
115 2rfg_A Dihydrodipicolinate syn 80.2 17 0.00057 33.0 11.2 36 211-247 92-134 (297)
116 2pl1_A Transcriptional regulat 80.0 14 0.00047 26.3 9.8 58 213-289 43-103 (121)
117 2qr3_A Two-component system re 80.0 11 0.00037 27.6 8.3 36 212-247 45-88 (140)
118 3hdv_A Response regulator; PSI 79.9 7.3 0.00025 28.6 7.3 58 212-288 49-111 (136)
119 2hjp_A Phosphonopyruvate hydro 79.8 3 0.0001 38.6 6.1 81 182-281 165-258 (290)
120 2qxy_A Response regulator; reg 79.6 4.7 0.00016 29.9 6.2 36 212-247 46-83 (142)
121 3tsm_A IGPS, indole-3-glycerol 79.5 23 0.00079 32.3 11.9 183 31-287 58-249 (272)
122 3snk_A Response regulator CHEY 79.1 6.2 0.00021 29.2 6.7 60 211-289 56-118 (135)
123 3qfw_A Ribulose-1,5-bisphospha 79.1 8.5 0.00029 37.2 9.2 134 61-286 142-283 (378)
124 2r91_A 2-keto-3-deoxy-(6-phosp 79.0 13 0.00044 33.4 9.9 77 170-286 11-96 (286)
125 3gl9_A Response regulator; bet 78.7 17 0.00057 26.6 8.9 59 212-289 44-107 (122)
126 2rjn_A Response regulator rece 78.6 17 0.0006 27.3 9.3 37 212-248 49-88 (154)
127 3fk4_A Rubisco-like protein; s 78.6 7.6 0.00026 37.9 8.8 141 61-287 152-301 (414)
128 1q7z_A 5-methyltetrahydrofolat 78.3 27 0.00092 34.9 12.9 182 19-289 155-362 (566)
129 3hv2_A Response regulator/HD d 78.2 15 0.00051 27.8 8.8 37 211-247 55-94 (153)
130 3m5v_A DHDPS, dihydrodipicolin 77.9 22 0.00074 32.2 11.2 36 211-247 100-142 (301)
131 3a5f_A Dihydrodipicolinate syn 77.3 12 0.00041 33.7 9.2 36 211-247 93-135 (291)
132 3b2n_A Uncharacterized protein 77.2 6.4 0.00022 29.1 6.3 36 212-247 47-85 (133)
133 3kto_A Response regulator rece 77.0 9.5 0.00033 28.3 7.2 57 213-288 49-110 (136)
134 3kht_A Response regulator; PSI 76.8 20 0.0007 26.5 9.5 59 212-289 49-112 (144)
135 3eoo_A Methylisocitrate lyase; 76.5 4.4 0.00015 37.7 6.3 67 211-281 181-262 (298)
136 3ctl_A D-allulose-6-phosphate 76.5 4.8 0.00017 35.6 6.3 34 71-104 73-107 (231)
137 3e96_A Dihydrodipicolinate syn 76.4 19 0.00066 32.9 10.4 36 211-247 103-145 (316)
138 3r0j_A Possible two component 76.2 16 0.00054 30.5 9.1 50 211-260 64-116 (250)
139 3gt7_A Sensor protein; structu 76.2 14 0.00047 28.2 8.1 59 212-289 49-112 (154)
140 1dbw_A Transcriptional regulat 76.1 9 0.00031 27.8 6.8 59 212-289 45-106 (126)
141 3h5d_A DHDPS, dihydrodipicolin 75.9 25 0.00084 32.2 11.0 53 53-111 20-80 (311)
142 3rqi_A Response regulator prot 75.9 10 0.00035 30.2 7.5 58 212-288 49-109 (184)
143 1tmy_A CHEY protein, TMY; chem 75.8 8.6 0.00029 27.5 6.5 59 212-289 45-106 (120)
144 3q58_A N-acetylmannosamine-6-p 75.8 18 0.00062 31.7 9.8 88 179-288 115-211 (229)
145 3b8i_A PA4872 oxaloacetate dec 75.8 7.6 0.00026 35.9 7.6 42 182-243 167-208 (287)
146 3qja_A IGPS, indole-3-glycerol 75.6 23 0.00078 32.0 10.6 92 178-289 147-244 (272)
147 2qf7_A Pyruvate carboxylase pr 75.4 74 0.0025 34.5 16.1 46 181-245 707-758 (1165)
148 1qkk_A DCTD, C4-dicarboxylate 75.1 8.4 0.00029 29.2 6.6 36 212-247 45-83 (155)
149 3out_A Glutamate racemase; str 75.0 21 0.00071 32.1 10.1 105 149-286 34-184 (268)
150 3khj_A Inosine-5-monophosphate 74.5 8.1 0.00028 36.3 7.6 55 211-286 114-172 (361)
151 1zuw_A Glutamate racemase 1; ( 74.2 47 0.0016 29.5 13.6 52 21-84 18-72 (272)
152 2pcq_A Putative dihydrodipicol 74.1 7.3 0.00025 35.1 6.9 77 170-287 10-95 (283)
153 2jfq_A Glutamate racemase; cel 74.0 30 0.001 31.0 11.0 53 20-84 36-90 (286)
154 3ffs_A Inosine-5-monophosphate 73.4 7.4 0.00025 37.5 7.1 55 211-286 153-211 (400)
155 1s2w_A Phosphoenolpyruvate pho 73.2 3.7 0.00013 38.0 4.8 79 182-280 169-260 (295)
156 1mvo_A PHOP response regulator 73.2 7.6 0.00026 28.4 5.7 40 212-251 45-87 (136)
157 2vvt_A Glutamate racemase; iso 73.1 37 0.0013 30.5 11.3 166 20-244 38-227 (290)
158 1srr_A SPO0F, sporulation resp 72.9 9.1 0.00031 27.6 6.0 35 213-247 46-83 (124)
159 2pln_A HP1043, response regula 72.6 10 0.00034 28.0 6.3 57 212-289 60-117 (137)
160 4dad_A Putative pilus assembly 72.5 27 0.00092 25.9 9.9 57 213-288 66-125 (146)
161 3kcn_A Adenylate cyclase homol 72.3 23 0.0008 26.6 8.5 33 215-247 49-84 (151)
162 3igs_A N-acetylmannosamine-6-p 72.1 30 0.001 30.3 10.2 89 178-288 114-211 (232)
163 3qfe_A Putative dihydrodipicol 71.5 31 0.0011 31.6 10.6 52 54-111 25-84 (318)
164 1eep_A Inosine 5'-monophosphat 71.5 15 0.00052 34.3 8.7 56 211-286 162-221 (404)
165 3crn_A Response regulator rece 71.4 28 0.00094 25.6 9.5 58 212-288 45-105 (132)
166 1vrd_A Inosine-5'-monophosphat 71.3 28 0.00094 33.2 10.5 56 211-286 246-305 (494)
167 3cnb_A DNA-binding response re 70.9 28 0.00094 25.4 9.2 58 212-288 52-114 (143)
168 3cz5_A Two-component response 70.5 14 0.00046 27.9 6.8 38 212-249 49-89 (153)
169 3t6k_A Response regulator rece 70.5 24 0.00081 26.3 8.1 38 212-249 46-88 (136)
170 1y0e_A Putative N-acetylmannos 70.5 14 0.00047 30.9 7.4 73 196-289 122-206 (223)
171 3f6p_A Transcriptional regulat 70.2 28 0.00096 25.2 8.5 58 212-289 44-104 (120)
172 3i42_A Response regulator rece 70.1 8.1 0.00028 28.0 5.2 46 202-247 35-85 (127)
173 1jcn_A Inosine monophosphate d 70.0 10 0.00034 36.6 7.2 56 211-286 264-323 (514)
174 1o66_A 3-methyl-2-oxobutanoate 70.0 15 0.00053 34.0 8.2 73 211-288 105-182 (275)
175 1ujp_A Tryptophan synthase alp 69.7 15 0.00051 33.2 7.9 18 226-244 79-96 (271)
176 3ist_A Glutamate racemase; str 69.7 41 0.0014 30.2 10.8 28 259-286 154-184 (269)
177 1jbe_A Chemotaxis protein CHEY 69.4 29 0.00098 25.0 9.1 57 213-288 48-109 (128)
178 2qjg_A Putative aldolase MJ040 69.0 22 0.00075 30.8 8.6 34 211-246 176-209 (273)
179 2hqr_A Putative transcriptiona 69.0 21 0.00071 28.9 8.0 36 212-249 42-78 (223)
180 3ist_A Glutamate racemase; str 68.8 66 0.0023 28.9 14.9 163 21-243 20-207 (269)
181 3cfy_A Putative LUXO repressor 68.5 32 0.0011 25.6 8.4 35 213-247 47-84 (137)
182 3kdn_A Rubisco, ribulose bisph 68.4 6.5 0.00022 38.7 5.6 141 61-288 167-317 (444)
183 3heb_A Response regulator rece 67.7 31 0.001 25.9 8.2 58 212-288 57-119 (152)
184 2qsj_A DNA-binding response re 67.7 20 0.0007 26.9 7.2 47 213-259 49-98 (154)
185 2zay_A Response regulator rece 67.6 25 0.00084 26.1 7.6 58 212-288 50-112 (147)
186 2qvg_A Two component response 67.6 18 0.00063 26.6 6.8 58 213-289 58-120 (143)
187 3grc_A Sensor protein, kinase; 67.6 15 0.0005 27.1 6.3 37 211-247 47-88 (140)
188 1tx2_A DHPS, dihydropteroate s 67.5 32 0.0011 31.8 9.8 71 211-287 73-166 (297)
189 3m6m_D Sensory/regulatory prot 67.4 31 0.0011 25.9 8.2 37 211-247 55-98 (143)
190 3q9s_A DNA-binding response re 67.4 21 0.00073 30.1 8.0 36 211-247 78-116 (249)
191 3t8y_A CHEB, chemotaxis respon 67.4 14 0.00048 28.7 6.4 61 211-289 68-131 (164)
192 1m3u_A 3-methyl-2-oxobutanoate 67.2 17 0.00058 33.4 7.8 74 211-288 104-182 (264)
193 3nhm_A Response regulator; pro 66.2 30 0.001 25.1 7.6 37 211-247 44-85 (133)
194 3vav_A 3-methyl-2-oxobutanoate 65.7 13 0.00045 34.4 6.8 72 211-287 116-193 (275)
195 1q6o_A Humps, 3-keto-L-gulonat 64.4 17 0.00057 30.8 6.7 62 20-104 45-107 (216)
196 1yio_A Response regulatory pro 63.9 27 0.00093 27.7 7.6 49 212-260 46-97 (208)
197 1rpx_A Protein (ribulose-phosp 63.8 17 0.00058 30.7 6.7 35 70-104 83-119 (230)
198 3cu2_A Ribulose-5-phosphate 3- 63.5 21 0.00072 31.7 7.5 59 211-289 145-219 (237)
199 3nwr_A A rubisco-like protein; 63.4 15 0.00053 36.0 7.1 42 61-102 173-222 (432)
200 1kgs_A DRRD, DNA binding respo 63.3 30 0.001 27.8 7.8 49 212-260 44-95 (225)
201 1zh2_A KDP operon transcriptio 63.1 37 0.0013 23.9 8.3 58 212-289 43-103 (121)
202 3f4w_A Putative hexulose 6 pho 62.6 29 0.001 28.6 7.8 33 213-245 24-59 (211)
203 1zgz_A Torcad operon transcrip 62.5 39 0.0013 24.0 8.4 56 213-288 45-103 (122)
204 1p6q_A CHEY2; chemotaxis, sign 62.1 23 0.00077 25.6 6.3 58 213-289 50-112 (129)
205 1f76_A Dihydroorotate dehydrog 61.8 43 0.0015 30.1 9.4 48 226-292 275-323 (336)
206 3mm4_A Histidine kinase homolo 61.3 35 0.0012 27.8 8.0 66 214-297 119-191 (206)
207 3s1x_A Probable transaldolase; 61.2 8.1 0.00028 34.7 4.4 42 68-111 115-164 (223)
208 2yci_X 5-methyltetrahydrofolat 60.9 70 0.0024 28.9 10.6 75 211-288 44-133 (271)
209 2rdm_A Response regulator rece 60.8 15 0.00053 26.5 5.2 38 214-251 50-91 (132)
210 1to3_A Putative aldolase YIHT; 60.8 82 0.0028 28.8 11.2 64 211-290 187-257 (304)
211 1p2f_A Response regulator; DRR 60.7 31 0.0011 27.8 7.5 38 213-250 42-82 (220)
212 3b0p_A TRNA-dihydrouridine syn 60.6 20 0.0007 33.1 7.1 59 211-289 154-227 (350)
213 3ajx_A 3-hexulose-6-phosphate 60.6 25 0.00084 29.0 7.0 62 20-104 42-104 (207)
214 2b7n_A Probable nicotinate-nuc 60.3 15 0.00053 33.1 6.1 58 211-288 199-258 (273)
215 1tv5_A Dhodehase, dihydroorota 59.9 28 0.00097 33.8 8.3 48 226-292 359-407 (443)
216 4dpp_A DHDPS 2, dihydrodipicol 59.7 54 0.0018 31.1 10.0 47 53-103 72-126 (360)
217 2e28_A Pyruvate kinase, PK; al 59.2 73 0.0025 32.2 11.3 119 72-286 180-312 (587)
218 1oy0_A Ketopantoate hydroxymet 59.2 25 0.00084 32.7 7.3 72 212-288 124-200 (281)
219 1h5y_A HISF; histidine biosynt 59.0 26 0.0009 29.0 6.9 34 211-245 43-83 (253)
220 3r8r_A Transaldolase; pentose 58.6 6.2 0.00021 35.2 3.2 42 68-111 113-162 (212)
221 3cg0_A Response regulator rece 57.3 52 0.0018 23.8 8.9 57 212-288 52-112 (140)
222 3h1g_A Chemotaxis protein CHEY 57.0 24 0.00082 25.8 5.7 57 214-289 51-112 (129)
223 2jba_A Phosphate regulon trans 56.7 30 0.001 24.7 6.1 35 213-247 45-84 (127)
224 3lte_A Response regulator; str 56.6 29 0.00098 25.1 6.1 57 212-288 48-109 (132)
225 2j48_A Two-component sensor ki 56.5 21 0.00072 24.7 5.1 55 212-288 43-102 (119)
226 1xhf_A DYE resistance, aerobic 56.5 51 0.0017 23.4 8.7 58 212-289 45-105 (123)
227 1vhc_A Putative KHG/KDPG aldol 56.2 22 0.00076 31.1 6.3 62 211-297 86-152 (224)
228 1y0e_A Putative N-acetylmannos 56.0 87 0.003 26.0 12.9 24 14-37 102-125 (223)
229 1k66_A Phytochrome response re 55.2 58 0.002 23.7 8.8 57 213-288 61-122 (149)
230 1x1o_A Nicotinate-nucleotide p 55.1 30 0.001 31.8 7.2 55 211-287 213-268 (286)
231 2jbm_A Nicotinate-nucleotide p 54.7 20 0.00067 33.0 5.9 58 211-288 214-273 (299)
232 3ble_A Citramalate synthase fr 54.4 31 0.001 31.9 7.2 59 29-98 16-80 (337)
233 3igs_A N-acetylmannosamine-6-p 54.3 28 0.00097 30.5 6.6 29 211-244 46-74 (232)
234 2vp8_A Dihydropteroate synthas 53.9 27 0.00092 32.8 6.8 73 211-288 75-168 (318)
235 1ka9_F Imidazole glycerol phos 53.7 33 0.0011 29.1 6.8 33 211-244 41-80 (252)
236 3exr_A RMPD (hexulose-6-phosph 53.0 25 0.00085 30.5 6.0 61 20-103 47-108 (221)
237 2oem_A 2,3-diketo-5-methylthio 52.7 49 0.0017 32.2 8.5 71 211-287 229-300 (413)
238 1k68_A Phytochrome response re 52.4 62 0.0021 23.2 9.0 58 213-289 54-116 (140)
239 1tqx_A D-ribulose-5-phosphate 52.4 65 0.0022 28.3 8.7 89 181-289 99-203 (227)
240 3q58_A N-acetylmannosamine-6-p 52.2 33 0.0011 30.1 6.7 29 211-244 46-74 (229)
241 1zfj_A Inosine monophosphate d 52.1 58 0.002 30.8 8.9 57 211-287 242-302 (491)
242 3qvq_A Phosphodiesterase OLEI0 51.4 60 0.0021 28.1 8.2 96 178-298 152-249 (252)
243 1w8s_A FBP aldolase, fructose- 51.3 56 0.0019 29.0 8.2 60 211-287 169-231 (263)
244 1bwv_A Rubisco, protein (ribul 51.0 40 0.0014 33.7 7.8 41 61-101 188-236 (493)
245 2y88_A Phosphoribosyl isomeras 50.9 63 0.0021 27.2 8.1 33 211-245 41-80 (244)
246 3jr2_A Hexulose-6-phosphate sy 50.7 25 0.00086 29.8 5.6 62 20-104 48-110 (218)
247 2a9o_A Response regulator; ess 50.6 62 0.0021 22.7 7.6 58 212-289 43-103 (120)
248 3c3w_A Two component transcrip 50.4 23 0.00078 29.1 5.1 52 212-263 45-99 (225)
249 2c6q_A GMP reductase 2; TIM ba 50.3 61 0.0021 30.1 8.6 54 214-287 132-189 (351)
250 3bg3_A Pyruvate carboxylase, m 50.0 29 0.00098 35.9 6.8 47 181-245 259-311 (718)
251 1a04_A Nitrate/nitrite respons 49.8 34 0.0012 27.4 6.0 50 212-261 49-101 (215)
252 1geq_A Tryptophan synthase alp 49.6 70 0.0024 27.1 8.2 35 70-104 100-134 (248)
253 1wbh_A KHG/KDPG aldolase; lyas 49.4 29 0.00099 30.1 5.8 62 211-297 85-151 (214)
254 1qwg_A PSL synthase;, (2R)-pho 49.2 23 0.0008 32.5 5.4 77 202-288 86-169 (251)
255 1ys7_A Transcriptional regulat 49.0 33 0.0011 27.6 5.8 48 212-259 49-99 (233)
256 1wa3_A 2-keto-3-deoxy-6-phosph 49.0 34 0.0012 28.2 6.0 34 211-244 32-67 (205)
257 2jk1_A HUPR, hydrogenase trans 48.8 37 0.0013 25.0 5.7 38 212-249 42-82 (139)
258 1rd5_A Tryptophan synthase alp 48.7 29 0.001 30.1 5.8 18 226-244 82-99 (262)
259 3ilh_A Two component response 48.7 52 0.0018 24.0 6.4 35 213-247 59-100 (146)
260 2zvi_A 2,3-diketo-5-methylthio 48.4 15 0.00052 36.0 4.2 70 211-287 243-314 (425)
261 1vzw_A Phosphoribosyl isomeras 48.2 72 0.0025 26.9 8.1 33 211-245 42-81 (244)
262 1mzh_A Deoxyribose-phosphate a 48.2 1.1E+02 0.0037 26.4 9.3 66 211-297 142-214 (225)
263 2dwu_A Glutamate racemase; iso 48.1 1.4E+02 0.0047 26.5 10.2 100 147-285 32-185 (276)
264 4f0h_A Ribulose bisphosphate c 47.8 29 0.00098 34.7 6.2 42 61-102 188-237 (493)
265 3zwt_A Dihydroorotate dehydrog 47.7 66 0.0023 30.2 8.4 45 227-290 285-330 (367)
266 2gkg_A Response regulator homo 47.7 44 0.0015 23.6 5.7 58 212-289 47-110 (127)
267 4adt_A Pyridoxine biosynthetic 47.2 45 0.0015 30.8 7.1 34 211-245 38-84 (297)
268 2r91_A 2-keto-3-deoxy-(6-phosp 47.2 38 0.0013 30.3 6.4 36 211-247 87-130 (286)
269 3cg4_A Response regulator rece 47.1 23 0.0008 25.9 4.3 35 213-247 50-89 (142)
270 1mxs_A KDPG aldolase; 2-keto-3 47.0 27 0.00093 30.6 5.3 57 211-292 95-151 (225)
271 1yxy_A Putative N-acetylmannos 47.0 65 0.0022 27.1 7.6 34 211-244 98-138 (234)
272 2nuw_A 2-keto-3-deoxygluconate 46.8 39 0.0013 30.4 6.4 36 211-247 88-131 (288)
273 2ehh_A DHDPS, dihydrodipicolin 46.7 39 0.0013 30.3 6.5 36 211-247 92-134 (294)
274 3n53_A Response regulator rece 46.6 26 0.00087 25.8 4.4 46 202-247 34-84 (140)
275 1ykw_A Rubisco-like protein; b 46.3 57 0.0019 32.0 7.9 69 211-287 254-322 (435)
276 1mb3_A Cell division response 46.1 30 0.001 24.6 4.6 36 212-247 43-83 (124)
277 2pz0_A Glycerophosphoryl diest 45.7 57 0.002 28.1 7.2 96 178-298 153-250 (252)
278 1geq_A Tryptophan synthase alp 45.7 61 0.0021 27.5 7.2 17 227-244 69-85 (248)
279 1w3i_A EDA, 2-keto-3-deoxy glu 45.7 41 0.0014 30.3 6.4 36 211-247 88-131 (293)
280 2vc6_A MOSA, dihydrodipicolina 45.6 40 0.0014 30.3 6.3 36 211-247 92-134 (292)
281 3a10_A Response regulator; pho 45.6 52 0.0018 23.1 5.8 57 212-289 43-102 (116)
282 2yw3_A 4-hydroxy-2-oxoglutarat 45.6 48 0.0017 28.3 6.6 54 211-289 80-133 (207)
283 2yxg_A DHDPS, dihydrodipicolin 45.6 37 0.0013 30.4 6.1 36 211-247 92-134 (289)
284 1qap_A Quinolinic acid phospho 45.0 70 0.0024 29.4 8.0 62 181-286 217-279 (296)
285 2yzr_A Pyridoxal biosynthesis 44.9 69 0.0024 30.5 8.1 76 211-288 34-149 (330)
286 3to5_A CHEY homolog; alpha(5)b 44.8 62 0.0021 25.7 6.7 57 214-289 57-118 (134)
287 3tdn_A FLR symmetric alpha-bet 44.8 54 0.0018 28.0 6.8 33 211-244 45-84 (247)
288 4avf_A Inosine-5'-monophosphat 44.3 75 0.0026 30.8 8.5 67 202-287 279-361 (490)
289 2ayx_A Sensor kinase protein R 44.2 1.3E+02 0.0046 25.3 9.2 59 212-289 171-232 (254)
290 2oqr_A Sensory transduction pr 44.2 42 0.0014 27.1 5.8 63 212-276 46-118 (230)
291 2ftp_A Hydroxymethylglutaryl-C 43.9 63 0.0022 29.0 7.4 36 211-246 169-210 (302)
292 1ub3_A Aldolase protein; schif 43.6 1.3E+02 0.0043 26.4 9.1 60 212-285 30-89 (220)
293 1dc7_A NTRC, nitrogen regulati 43.5 5.4 0.00018 28.5 0.2 35 213-247 46-83 (124)
294 3eq2_A Probable two-component 42.6 60 0.0021 29.1 7.0 48 200-247 35-85 (394)
295 3nav_A Tryptophan synthase alp 42.5 24 0.0008 32.1 4.3 43 68-111 115-157 (271)
296 2e6f_A Dihydroorotate dehydrog 42.3 64 0.0022 28.6 7.1 47 226-291 231-277 (314)
297 3noy_A 4-hydroxy-3-methylbut-2 41.8 1E+02 0.0035 29.8 8.8 73 211-285 56-138 (366)
298 2qzj_A Two-component response 41.8 1E+02 0.0035 22.7 9.2 58 212-289 46-106 (136)
299 3tha_A Tryptophan synthase alp 41.2 10 0.00034 34.5 1.6 70 179-286 24-122 (252)
300 3l12_A Putative glycerophospho 41.1 61 0.0021 28.9 6.8 64 212-299 243-308 (313)
301 3glc_A Aldolase LSRF; TIM barr 41.1 52 0.0018 30.3 6.5 30 211-244 199-228 (295)
302 2d69_A Ribulose bisphosphate c 41.0 58 0.002 31.9 7.1 69 211-287 242-313 (430)
303 1zcc_A Glycerophosphodiester p 40.8 46 0.0016 28.8 5.8 62 212-297 168-233 (248)
304 2yw3_A 4-hydroxy-2-oxoglutarat 40.8 24 0.00083 30.2 4.0 35 211-245 121-157 (207)
305 2ekc_A AQ_1548, tryptophan syn 40.6 34 0.0012 30.3 5.0 36 69-104 113-148 (262)
306 2qjg_A Putative aldolase MJ040 40.6 1.4E+02 0.0047 25.7 8.8 78 211-296 109-197 (273)
307 1ypf_A GMP reductase; GUAC, pu 40.5 78 0.0027 28.9 7.5 60 208-287 164-239 (336)
308 1ydo_A HMG-COA lyase; TIM-barr 40.5 36 0.0012 31.1 5.3 35 211-245 167-207 (307)
309 2qv0_A Protein MRKE; structura 39.9 70 0.0024 23.4 6.0 57 212-289 53-112 (143)
310 3i65_A Dihydroorotate dehydrog 39.8 65 0.0022 31.2 7.2 48 226-292 331-379 (415)
311 2cw6_A Hydroxymethylglutaryl-C 39.5 59 0.002 29.1 6.4 35 211-245 166-206 (298)
312 3ru6_A Orotidine 5'-phosphate 39.1 90 0.0031 29.0 7.8 104 182-289 68-180 (303)
313 1dz3_A Stage 0 sporulation pro 39.1 80 0.0027 22.7 6.1 58 212-288 46-107 (130)
314 1nvm_A HOA, 4-hydroxy-2-oxoval 39.1 60 0.0021 29.8 6.6 26 59-84 24-49 (345)
315 1q7z_A 5-methyltetrahydrofolat 39.0 1.1E+02 0.0038 30.4 8.9 46 56-101 243-289 (566)
316 1wdd_A Ribulose bisphosphate c 39.0 38 0.0013 33.7 5.5 41 61-101 179-227 (477)
317 2q5c_A NTRC family transcripti 38.5 36 0.0012 29.0 4.6 72 214-286 70-148 (196)
318 1thf_D HISF protein; thermophI 38.3 1.2E+02 0.0039 25.6 7.8 34 211-245 40-80 (253)
319 2p10_A MLL9387 protein; putati 38.2 28 0.00097 32.6 4.2 68 211-289 118-192 (286)
320 3o1n_A 3-dehydroquinate dehydr 38.0 50 0.0017 30.0 5.7 40 211-253 186-234 (276)
321 3daq_A DHDPS, dihydrodipicolin 37.7 44 0.0015 30.0 5.3 36 211-247 94-136 (292)
322 1jub_A Dihydroorotate dehydrog 37.7 1.1E+02 0.0037 27.0 7.8 46 227-291 229-275 (311)
323 2pju_A Propionate catabolism o 37.7 46 0.0016 29.4 5.3 71 215-286 83-160 (225)
324 4fo4_A Inosine 5'-monophosphat 37.6 88 0.003 29.5 7.6 59 210-287 166-240 (366)
325 2gwr_A DNA-binding response re 37.2 72 0.0025 26.1 6.2 49 212-261 47-98 (238)
326 3c2e_A Nicotinate-nucleotide p 36.8 28 0.00097 31.9 4.0 66 18-111 185-253 (294)
327 1u83_A Phosphosulfolactate syn 36.1 31 0.001 32.2 4.0 85 184-286 101-191 (276)
328 3uhf_A Glutamate racemase; str 36.1 89 0.003 28.3 7.1 89 21-122 39-149 (274)
329 3ks6_A Glycerophosphoryl diest 36.0 91 0.0031 26.9 6.9 63 212-298 179-243 (250)
330 4h3d_A 3-dehydroquinate dehydr 35.9 54 0.0018 29.3 5.5 30 61-90 28-58 (258)
331 1eye_A DHPS 1, dihydropteroate 35.9 2.5E+02 0.0086 25.5 10.3 71 211-288 39-132 (280)
332 2qyg_A Ribulose bisphosphate c 35.8 83 0.0028 31.1 7.3 69 211-287 274-342 (452)
333 1qpo_A Quinolinate acid phosph 35.7 80 0.0027 28.9 6.8 64 181-286 203-268 (284)
334 1tqj_A Ribulose-phosphate 3-ep 34.8 56 0.0019 28.3 5.3 88 181-288 100-202 (230)
335 3h5i_A Response regulator/sens 34.6 1E+02 0.0036 22.6 6.2 34 213-247 49-86 (140)
336 2i1o_A Nicotinate phosphoribos 34.6 79 0.0027 30.2 6.8 64 19-108 197-271 (398)
337 3gr7_A NADPH dehydrogenase; fl 34.5 88 0.003 28.8 6.9 68 181-286 227-306 (340)
338 2jfz_A Glutamate racemase; cel 34.5 55 0.0019 28.5 5.3 52 21-84 15-68 (255)
339 3kts_A Glycerol uptake operon 33.8 47 0.0016 29.1 4.7 54 214-288 127-180 (192)
340 3vk5_A MOEO5; TIM barrel, tran 33.7 46 0.0016 31.1 4.9 32 211-244 63-101 (286)
341 1ny5_A Transcriptional regulat 33.7 72 0.0025 29.4 6.2 50 212-261 42-94 (387)
342 1vcf_A Isopentenyl-diphosphate 33.3 1.2E+02 0.0042 27.3 7.6 44 226-288 243-286 (332)
343 1qop_A Tryptophan synthase alp 33.3 53 0.0018 28.9 5.0 36 68-104 112-148 (268)
344 1yxy_A Putative N-acetylmannos 33.2 70 0.0024 26.9 5.6 39 17-82 119-157 (234)
345 2c6q_A GMP reductase 2; TIM ba 33.0 1.2E+02 0.0041 28.1 7.6 56 211-286 179-251 (351)
346 3no3_A Glycerophosphodiester p 32.8 84 0.0029 27.0 6.1 63 212-298 169-235 (238)
347 2hmc_A AGR_L_411P, dihydrodipi 32.5 78 0.0027 29.5 6.2 38 211-248 115-160 (344)
348 3o07_A Pyridoxine biosynthesis 32.4 1.4E+02 0.0047 28.2 7.8 54 211-284 28-94 (291)
349 1n7k_A Deoxyribose-phosphate a 32.2 1.4E+02 0.0049 26.5 7.7 59 212-284 47-105 (234)
350 1l6w_A Fructose-6-phosphate al 32.2 33 0.0011 30.5 3.5 92 11-111 62-163 (220)
351 3klo_A Transcriptional regulat 32.0 1.2E+02 0.0042 24.5 6.7 48 213-260 53-104 (225)
352 2v82_A 2-dehydro-3-deoxy-6-pho 32.0 31 0.001 28.7 3.1 39 63-101 17-55 (212)
353 1gox_A (S)-2-hydroxy-acid oxid 32.0 1.8E+02 0.0063 26.8 8.7 72 200-290 232-312 (370)
354 3w01_A Heptaprenylglyceryl pho 31.7 45 0.0015 30.1 4.3 35 211-247 33-74 (235)
355 2eja_A URO-D, UPD, uroporphyri 31.7 1.4E+02 0.0047 26.8 7.5 38 208-246 186-238 (338)
356 2r25_B Osmosensing histidine p 31.7 1.5E+02 0.0051 21.6 7.1 56 214-288 52-111 (133)
357 1t35_A Hypothetical protein YV 31.4 88 0.003 26.7 6.0 51 214-265 97-157 (191)
358 2pcq_A Putative dihydrodipicol 31.3 61 0.0021 29.0 5.1 34 211-247 85-126 (283)
359 2nli_A Lactate oxidase; flavoe 30.8 1.5E+02 0.005 27.7 7.8 68 202-288 238-314 (368)
360 1p0k_A Isopentenyl-diphosphate 30.6 1.3E+02 0.0044 27.3 7.2 69 203-290 191-283 (349)
361 3l5l_A Xenobiotic reductase A; 30.5 1.5E+02 0.0052 27.4 7.8 33 211-244 256-300 (363)
362 2ze3_A DFA0005; organic waste 30.3 49 0.0017 30.1 4.4 38 62-99 165-203 (275)
363 2o55_A Putative glycerophospho 30.3 1.3E+02 0.0045 25.8 6.9 67 212-298 187-255 (258)
364 1lt8_A Betaine-homocysteine me 30.3 30 0.001 33.3 3.1 22 266-287 53-74 (406)
365 1ydn_A Hydroxymethylglutaryl-C 30.0 1.4E+02 0.0046 26.5 7.2 36 211-246 165-206 (295)
366 3cu5_A Two component transcrip 29.8 96 0.0033 23.0 5.3 35 213-247 48-85 (141)
367 1g8m_A Aicar transformylase-IM 29.7 1.8E+02 0.0061 29.9 8.7 44 211-263 121-164 (593)
368 2yr1_A 3-dehydroquinate dehydr 29.7 71 0.0024 28.5 5.3 43 211-257 166-217 (257)
369 3eeg_A 2-isopropylmalate synth 29.6 98 0.0034 28.5 6.3 70 181-284 149-227 (325)
370 3rmj_A 2-isopropylmalate synth 29.5 1E+02 0.0035 29.0 6.6 44 30-84 10-53 (370)
371 1wx0_A Transaldolase; structur 29.5 46 0.0016 29.5 3.9 92 11-111 69-170 (223)
372 3s99_A Basic membrane lipoprot 29.2 77 0.0026 29.3 5.6 65 178-243 43-114 (356)
373 3k13_A 5-methyltetrahydrofolat 29.2 1.6E+02 0.0055 27.1 7.7 75 211-288 47-141 (300)
374 1z41_A YQJM, probable NADH-dep 29.2 3.1E+02 0.011 24.8 9.6 81 179-286 140-248 (338)
375 1xg4_A Probable methylisocitra 29.0 52 0.0018 30.3 4.3 39 62-100 164-203 (295)
376 3fwz_A Inner membrane protein 29.0 1.9E+02 0.0066 22.1 8.0 35 213-247 70-106 (140)
377 1to3_A Putative aldolase YIHT; 28.7 2.2E+02 0.0076 25.9 8.5 66 211-289 118-199 (304)
378 3ffs_A Inosine-5-monophosphate 28.6 1.6E+02 0.0055 28.2 7.8 57 211-286 202-274 (400)
379 3qvl_A Putative hydantoin race 28.6 17 0.00059 32.1 1.0 66 217-286 4-75 (245)
380 3hgj_A Chromate reductase; TIM 28.5 49 0.0017 30.5 4.1 56 17-86 204-260 (349)
381 3oa3_A Aldolase; structural ge 28.4 3.6E+02 0.012 25.0 9.9 65 211-296 198-272 (288)
382 1zlp_A PSR132, petal death pro 28.3 46 0.0016 31.2 3.9 38 62-99 186-224 (318)
383 1s4d_A Uroporphyrin-III C-meth 28.3 2E+02 0.0067 25.4 7.9 90 8-104 21-121 (280)
384 3ngj_A Deoxyribose-phosphate a 28.3 3.3E+02 0.011 24.5 9.4 59 212-284 54-112 (239)
385 3paj_A Nicotinate-nucleotide p 28.3 1.4E+02 0.0047 28.1 7.2 63 180-286 239-302 (320)
386 1sfl_A 3-dehydroquinate dehydr 28.3 76 0.0026 27.8 5.1 27 62-88 14-41 (238)
387 3khj_A Inosine-5-monophosphate 28.1 1.4E+02 0.0049 27.8 7.2 68 200-287 152-236 (361)
388 3uhf_A Glutamate racemase; str 28.0 1.1E+02 0.0039 27.6 6.4 54 149-232 51-107 (274)
389 2zbt_A Pyridoxal biosynthesis 28.0 68 0.0023 28.3 4.8 16 68-83 31-46 (297)
390 2htm_A Thiazole biosynthesis p 27.8 2.1E+02 0.0072 26.5 8.1 92 175-288 107-208 (268)
391 2b7n_A Probable nicotinate-nuc 27.8 93 0.0032 27.9 5.7 65 18-111 168-233 (273)
392 3oa3_A Aldolase; structural ge 27.5 2.6E+02 0.0091 25.9 8.8 59 212-284 85-143 (288)
393 3luf_A Two-component system re 27.4 2.8E+02 0.0096 23.4 8.6 56 215-289 170-230 (259)
394 3cwo_X Beta/alpha-barrel prote 27.3 1.9E+02 0.0066 23.0 7.0 56 212-288 23-83 (237)
395 3c3m_A Response regulator rece 27.2 1.7E+02 0.0059 21.3 6.3 36 213-248 46-86 (138)
396 1rcu_A Conserved hypothetical 27.2 77 0.0026 27.5 4.9 41 212-254 116-157 (195)
397 3l5l_A Xenobiotic reductase A; 27.1 38 0.0013 31.4 3.1 57 17-86 210-267 (363)
398 3s1x_A Probable transaldolase; 27.1 1.6E+02 0.0055 26.3 7.1 56 211-288 122-189 (223)
399 2f6u_A GGGPS, (S)-3-O-geranylg 26.7 52 0.0018 29.4 3.8 34 211-246 30-70 (234)
400 1vpx_A Protein (transaldolase 26.7 42 0.0014 30.1 3.2 92 11-111 72-173 (230)
401 3lmz_A Putative sugar isomeras 26.6 1.7E+02 0.0059 24.3 6.9 71 211-295 40-117 (257)
402 3usb_A Inosine-5'-monophosphat 26.6 1.9E+02 0.0065 28.1 8.1 60 209-288 313-389 (511)
403 3sbx_A Putative uncharacterize 26.6 1.7E+02 0.006 25.2 7.0 53 214-266 108-169 (189)
404 1s8n_A Putative antiterminator 26.4 2.3E+02 0.0078 22.3 7.3 37 212-249 56-95 (205)
405 2eq5_A 228AA long hypothetical 26.4 1.9E+02 0.0065 24.1 7.1 70 22-99 27-96 (228)
406 2b4a_A BH3024; flavodoxin-like 26.3 94 0.0032 22.6 4.6 34 213-246 59-95 (138)
407 3ewb_X 2-isopropylmalate synth 25.9 2.3E+02 0.0079 25.5 8.0 71 181-284 148-226 (293)
408 2w6r_A Imidazole glycerol phos 25.8 1.2E+02 0.0042 25.8 5.9 33 211-244 40-79 (266)
409 3ndc_A Precorrin-4 C(11)-methy 25.7 1.5E+02 0.005 26.1 6.5 91 8-104 10-105 (264)
410 1i3c_A Response regulator RCP1 25.7 2.1E+02 0.007 21.2 6.8 56 214-288 61-121 (149)
411 3m47_A Orotidine 5'-phosphate 25.6 1.3E+02 0.0043 26.2 6.0 44 181-224 55-101 (228)
412 1vrd_A Inosine-5'-monophosphat 25.5 1.8E+02 0.006 27.6 7.5 57 211-287 296-369 (494)
413 2ocz_A 3-dehydroquinate dehydr 25.3 68 0.0023 28.1 4.3 35 211-247 138-181 (231)
414 3tqv_A Nicotinate-nucleotide p 25.1 98 0.0034 28.7 5.5 50 216-286 170-224 (287)
415 3i10_A Putative glycerophospho 25.0 1.9E+02 0.0063 26.0 7.2 63 226-298 207-273 (278)
416 3s81_A Putative aspartate race 24.8 1.5E+02 0.005 26.5 6.4 48 239-287 59-106 (268)
417 3vkj_A Isopentenyl-diphosphate 24.4 2E+02 0.0068 27.0 7.5 23 261-288 275-297 (368)
418 3tr9_A Dihydropteroate synthas 24.4 1.5E+02 0.005 27.9 6.5 47 211-260 59-124 (314)
419 3gve_A YFKN protein; alpha-bet 24.3 54 0.0018 30.2 3.5 27 262-288 189-215 (341)
420 1eep_A Inosine 5'-monophosphat 24.3 1.9E+02 0.0066 26.8 7.4 72 196-286 197-284 (404)
421 3r12_A Deoxyribose-phosphate a 24.1 4.1E+02 0.014 24.2 9.3 59 212-284 70-128 (260)
422 4fxs_A Inosine-5'-monophosphat 23.9 68 0.0023 31.2 4.4 16 69-84 284-299 (496)
423 3dzd_A Transcriptional regulat 23.8 2E+02 0.0069 26.3 7.3 47 213-259 43-92 (368)
424 2gou_A Oxidoreductase, FMN-bin 23.7 2.8E+02 0.0095 25.7 8.3 72 176-286 243-321 (365)
425 3jyf_A 2',3'-cyclic nucleotide 23.7 56 0.0019 30.2 3.5 27 262-288 183-209 (339)
426 3tr2_A Orotidine 5'-phosphate 23.7 2.4E+02 0.0083 24.9 7.6 96 191-289 62-166 (239)
427 3khd_A Pyruvate kinase; malari 23.7 5.1E+02 0.017 26.0 10.6 125 65-286 217-355 (520)
428 1jcn_A Inosine monophosphate d 23.4 2.2E+02 0.0077 27.2 7.8 61 208-288 311-388 (514)
429 1vyr_A Pentaerythritol tetrani 23.4 3.4E+02 0.011 25.1 8.8 34 211-245 261-300 (364)
430 2jbm_A Nicotinate-nucleotide p 23.3 1.3E+02 0.0044 27.5 5.9 65 18-111 183-248 (299)
431 1viz_A PCRB protein homolog; s 23.2 64 0.0022 28.8 3.7 31 211-243 30-65 (240)
432 2hjp_A Phosphonopyruvate hydro 23.1 65 0.0022 29.6 3.8 37 64-100 165-203 (290)
433 2oog_A Glycerophosphoryl diest 23.1 99 0.0034 27.2 4.9 64 212-299 216-281 (287)
434 4ef8_A Dihydroorotate dehydrog 22.9 2E+02 0.0067 27.0 7.1 47 226-291 264-310 (354)
435 1wv2_A Thiazole moeity, thiazo 22.4 2.6E+02 0.0088 25.9 7.6 92 176-289 119-218 (265)
436 1o4u_A Type II quinolic acid p 22.4 95 0.0033 28.5 4.8 43 180-244 201-245 (285)
437 2i14_A Nicotinate-nucleotide p 22.4 1.7E+02 0.0059 27.8 6.7 67 18-110 193-271 (395)
438 3ih1_A Methylisocitrate lyase; 22.3 65 0.0022 29.9 3.7 37 63-99 173-210 (305)
439 1ps9_A 2,4-dienoyl-COA reducta 22.3 2.2E+02 0.0074 27.9 7.6 18 226-244 268-285 (671)
440 2nx9_A Oxaloacetate decarboxyl 22.2 1.3E+02 0.0044 29.4 5.9 66 18-101 129-198 (464)
441 3ojc_A Putative aspartate/glut 22.2 1.8E+02 0.0061 25.1 6.3 46 240-287 37-83 (231)
442 1ydh_A AT5G11950; structural g 22.0 2.2E+02 0.0074 24.9 6.8 51 214-264 105-164 (216)
443 1vc4_A Indole-3-glycerol phosp 21.9 3.3E+02 0.011 23.9 8.1 33 211-244 75-111 (254)
444 1b73_A Glutamate racemase; iso 21.8 1.5E+02 0.0051 25.7 5.7 52 21-84 15-68 (254)
445 2otd_A Glycerophosphodiester p 21.7 68 0.0023 27.4 3.5 63 211-297 181-245 (247)
446 1aj0_A DHPS, dihydropteroate s 21.6 2.4E+02 0.0081 25.7 7.2 61 181-262 36-111 (282)
447 2qiw_A PEP phosphonomutase; st 21.6 44 0.0015 30.1 2.3 39 61-99 164-203 (255)
448 3bw2_A 2-nitropropane dioxygen 21.3 2.2E+02 0.0076 25.9 7.1 34 211-245 162-214 (369)
449 2nv1_A Pyridoxal biosynthesis 21.2 3.2E+02 0.011 24.2 7.9 33 211-244 38-83 (305)
450 4e16_A Precorrin-4 C(11)-methy 21.2 1.8E+02 0.0061 25.2 6.1 91 8-104 11-106 (253)
451 1jfl_A Aspartate racemase; alp 21.1 2.4E+02 0.0081 23.7 6.7 47 239-286 34-80 (228)
452 1me8_A Inosine-5'-monophosphat 21.0 89 0.0031 30.2 4.5 57 211-287 251-312 (503)
453 2gzm_A Glutamate racemase; enz 20.9 2.9E+02 0.01 24.1 7.5 28 260-287 153-183 (267)
454 3ldv_A Orotidine 5'-phosphate 20.8 3E+02 0.01 24.7 7.6 106 181-289 70-184 (255)
455 1a2o_A CHEB methylesterase; ba 20.8 2.9E+02 0.01 25.1 7.7 59 213-289 48-109 (349)
456 3bre_A Probable two-component 20.7 93 0.0032 27.0 4.2 50 212-261 61-115 (358)
457 3nbm_A PTS system, lactose-spe 20.3 92 0.0032 24.5 3.7 41 211-253 50-91 (108)
458 4g9p_A 4-hydroxy-3-methylbut-2 20.3 62 0.0021 31.7 3.2 46 64-111 37-85 (406)
459 3out_A Glutamate racemase; str 20.2 1.9E+02 0.0065 25.8 6.2 90 21-123 22-129 (268)
460 3ndo_A Deoxyribose-phosphate a 20.1 4.6E+02 0.016 23.3 9.1 78 178-294 141-226 (231)
461 2oho_A Glutamate racemase; iso 20.1 1.6E+02 0.0055 25.9 5.6 56 16-84 23-80 (273)
462 1vd6_A Glycerophosphoryl diest 20.1 1.4E+02 0.0047 25.2 5.0 59 212-294 161-221 (224)
463 3vzx_A Heptaprenylglyceryl pho 20.0 89 0.003 27.9 4.0 33 211-245 28-65 (228)
No 1
>1h7n_A 5-aminolaevulinic acid dehydratase; lyase, aldolase, TIM barrel, tetrapyrrole synthesis; HET: SHF; 1.6A {Saccharomyces cerevisiae} SCOP: c.1.10.3 PDB: 1h7p_A* 1h7r_A* 1ohl_A* 1qml_A 1qnv_A 1w31_A* 1h7o_A* 1eb3_A* 1gjp_A* 1ylv_A* 1aw5_A
Probab=100.00 E-value=1e-106 Score=766.40 Aligned_cols=245 Identities=49% Similarity=0.860 Sum_probs=240.7
Q ss_pred CCCcccccCCCCCChHHHHHHHHHHhCCCcEEEeeecCCCCCCCCcceeeCCCCceecHHhHHHHHHHHHHHHHcCCCcc
Q psy15126 3 LRDETASFADTPDNPLFQVIPMIRKQFPSLTIACDVCLCGYTSHGHCAIFNEDGSIHYEKTLKRLADISKAFSDAGAHIV 82 (300)
Q Consensus 3 ~kd~~~s~a~~~~~~~~~~i~~ik~~~p~l~i~~Dvclc~yt~hGHcgi~~~~g~i~nd~Tl~~l~~~A~~~A~aGad~v 82 (300)
.||+.||+||+|||++|||||.||++||+|+|||||||||||+||||||++++|.|+||+||++|+++|++||+||||+|
T Consensus 97 ~KD~~gs~A~~~~g~v~rair~iK~~~pdl~VitDvcLc~YT~HGHcGil~~~g~V~ND~Tl~~Lak~Als~A~AGAdiV 176 (342)
T 1h7n_A 97 TKDPVGTAADDPAGPVIQGIKFIREYFPELYIICDVCLCEYTSHGHCGVLYDDGTINRERSVSRLAAVAVNYAKAGAHCV 176 (342)
T ss_dssp CCBTTCGGGGCTTSHHHHHHHHHHHHCTTSEEEEEECSTTTBTTCCSSCBCTTSSBCHHHHHHHHHHHHHHHHHHTCSEE
T ss_pred CCCccccccCCCCChHHHHHHHHHHHCCCeEEEEeeecccccCCCceeEECCCCcCccHHHHHHHHHHHHHHHHcCCCee
Confidence 69999999999999999999999999999999999999999999999999778999999999999999999999999999
Q ss_pred ccCCCCcchHHHHHHHHhhCCCCCCcccccchhhhhcccchhhhhhhcCCCCCCCcceeeCCCCCCceEEEEeecccCCC
Q psy15126 83 APSDMMDNRIHAIKQSLFTSRQSSTTGLLSYSAKFCSAFYGPFREAAGSAPTFGDRSCYQLPCGSKGLAIRAAVCLCGYT 162 (300)
Q Consensus 83 APSdmMDgrv~air~aLd~~g~~~~v~ImsysaK~aS~~YGPfRda~gS~~~~gdr~~yQ~~~~~~~~ai~~dvclc~yt 162 (300)
||||||||||++||++||++||+.+|+|||||+||||+||||||||++|+|+||||++|||||+|.++|+|+.
T Consensus 177 APSdMMDGrV~aIR~aLd~~G~~~~v~ImsYsaKyASafYGPFRdAa~Sap~~GDRktYQmdpaN~~EAlre~------- 249 (342)
T 1h7n_A 177 APSDMIDGRIRDIKRGLINANLAHKTFVLSYAAKFSGNLYGPFRDAACSAPSNGDRKCYQLPPAGRGLARRAL------- 249 (342)
T ss_dssp EECCCCTTHHHHHHHHHHHTTCTTTCEEEEEEEEBCSSCCHHHHHHHTCCCSSSCSTTTSBCTTCHHHHHHHH-------
T ss_pred ecccccccHHHHHHHHHHHCCCccCceEeechHHHhHHhhHHHHHHHhcCCCCCCccccCCCCCCHHHHHHHH-------
Confidence 9999999999999999999999779999999999999999999999999999999999999999999999997
Q ss_pred CCCccccccCCCcccchHhHHHHHHHHHhhhcccccCCCCCccccchhhhcCCceeeccCcchHHHHHHHHHhhCCCCCE
Q psy15126 163 SHGHCAIFNEDGSIHYEKTLKRLADISKAFSDAVYVPNHNTDRFQARDVSQGADFLMVKPALPYLDIISEVKSRHPAYPL 242 (300)
Q Consensus 163 ~hGHcgi~~~~g~i~nd~tl~~l~~~a~~~a~~~~~~~~n~~~~~~~Da~~GADivmVkPsmm~ld~Ir~~~d~~~~vpi 242 (300)
++|++||||||||||+|+|||+||++|++||++|+
T Consensus 250 ---------------------------------------------~~Di~EGAD~vMVKPal~YLDIi~~vk~~~p~~P~ 284 (342)
T 1h7n_A 250 ---------------------------------------------ERDMSEGADGIIVKPSTFYLDIMRDASEICKDLPI 284 (342)
T ss_dssp ---------------------------------------------HHHHHTTCSEEEEESSGGGHHHHHHHHHHTTTSCE
T ss_pred ---------------------------------------------HhhHHhCCCeEEEecCccHHHHHHHHHHhccCCCe
Confidence 89999999999999999999999999999999999
Q ss_pred EeEecccccHHHHHHHhCCCCCHHHHHHHHHHHHHHcCCCEEEecchHHHHHHHhhC
Q psy15126 243 FVYQVSGEYAMLAFAAQAGALDLKRALMETLTCLRRGGADVIISYYTPRVLEWLRED 299 (300)
Q Consensus 243 ~aY~vSgeY~~~r~Aa~~~~~n~~eal~E~~~~~~r~GAD~Ii~y~A~~~ld~l~~~ 299 (300)
++|||||||+|+|+|+++||+|++++++|+|+++||+|||+||||||+++++||++.
T Consensus 285 aaYqVSGEYAMikaAa~~GwiD~~~~v~Esl~~~kRAGAd~IiTYfA~~~a~~L~~~ 341 (342)
T 1h7n_A 285 CAYHVSGEYAMLHAAAEKGVVDLKTIAFESHQGFLRAGARLIITYLAPEFLDWLDEE 341 (342)
T ss_dssp EEEECHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHTTCSEEEETTHHHHHHHTTC-
T ss_pred EEEEcCcHHHHHHHHHHcCCccHHHHHHHHHHHHHhcCCCEEEeecHHHHHHHhhcc
Confidence 999999999999999999999999999999999999999999999999999999864
No 2
>1pv8_A Delta-aminolevulinic acid dehydratase; porphobilinogen synthase, tetrapyrrole biosynthesis, reactio intermediate, lyase; HET: PB1; 2.20A {Homo sapiens} SCOP: c.1.10.3 PDB: 1e51_A* 2z0i_A 2z1b_A
Probab=100.00 E-value=4.9e-107 Score=765.80 Aligned_cols=243 Identities=57% Similarity=1.049 Sum_probs=199.9
Q ss_pred CCCcccccCCCCCChHHHHHHHHHHhCCCcEEEeeecCCCCCCCCcceeeCCCCceecHHhHHHHHHHHHHHHHcCCCcc
Q psy15126 3 LRDETASFADTPDNPLFQVIPMIRKQFPSLTIACDVCLCGYTSHGHCAIFNEDGSIHYEKTLKRLADISKAFSDAGAHIV 82 (300)
Q Consensus 3 ~kd~~~s~a~~~~~~~~~~i~~ik~~~p~l~i~~Dvclc~yt~hGHcgi~~~~g~i~nd~Tl~~l~~~A~~~A~aGad~v 82 (300)
.||+.||+||+|||++|||||.||++||+|+|||||||||||+||||||++++|.|+||+|+++|++||++||+||||+|
T Consensus 86 ~Kd~~gs~A~~~~g~v~~air~iK~~~pdl~vitDvcLc~YT~HGHcGil~~~g~v~ND~Tl~~La~~Als~A~AGAdiV 165 (330)
T 1pv8_A 86 PKDERGSAADSEESPAIEAIHLLRKTFPNLLVACDVCLCPYTSHGHCGLLSENGAFRAEESRQRLAEVALAYAKAGCQVV 165 (330)
T ss_dssp -----------CCSHHHHHHHHHHHHSTTSEEEEEECCC---------------CHHHHHHHHHHHHHHHHHHHHTCSEE
T ss_pred CCCccccccCCCCChHHHHHHHHHHHCCCeEEEEeeecccccCCCceeEECCCCcCccHHHHHHHHHHHHHHHHcCCCee
Confidence 39999999999999999999999999999999999999999999999999767999999999999999999999999999
Q ss_pred ccCCCCcchHHHHHHHHhhCCCCCC-cccccchhhhhcccchhhhhhhcCCCCCCCcceeeCCCCCCceEEEEeecccCC
Q psy15126 83 APSDMMDNRIHAIKQSLFTSRQSST-TGLLSYSAKFCSAFYGPFREAAGSAPTFGDRSCYQLPCGSKGLAIRAAVCLCGY 161 (300)
Q Consensus 83 APSdmMDgrv~air~aLd~~g~~~~-v~ImsysaK~aS~~YGPfRda~gS~~~~gdr~~yQ~~~~~~~~ai~~dvclc~y 161 (300)
||||||||||++||++||++|| .+ |+|||||+||||+||||||||++|+|.||||++|||||+|.++|+|+.
T Consensus 166 APSdMMDGrV~aIR~aLd~~G~-~~~v~ImsYsaKyASafYGPFRdAa~Sap~~GDRktYQmdpaN~~EAlre~------ 238 (330)
T 1pv8_A 166 APSDMMDGRVEAIKEALMAHGL-GNRVSVMSYSAKFASCFYGPFRDAAKSSPAFGDRRCYQLPPGARGLALRAV------ 238 (330)
T ss_dssp EECC--CCHHHHHHHHHHHTTC-TTTCEEBCCCEECCCGGGHHHHHCC-------------CCTTCHHHHHHHH------
T ss_pred ecccccccHHHHHHHHHHhCCC-cCCceEeehhHHHhHhhhhHHHHHHhcCCCCCCccccCCCCCCHHHHHHHH------
Confidence 9999999999999999999999 77 999999999999999999999999999999999999999999999997
Q ss_pred CCCCccccccCCCcccchHhHHHHHHHHHhhhcccccCCCCCccccchhhhcCCceeeccCcchHHHHHHHHHhhCCCCC
Q psy15126 162 TSHGHCAIFNEDGSIHYEKTLKRLADISKAFSDAVYVPNHNTDRFQARDVSQGADFLMVKPALPYLDIISEVKSRHPAYP 241 (300)
Q Consensus 162 t~hGHcgi~~~~g~i~nd~tl~~l~~~a~~~a~~~~~~~~n~~~~~~~Da~~GADivmVkPsmm~ld~Ir~~~d~~~~vp 241 (300)
++|++||||||||||+|+|||+||++|++||++|
T Consensus 239 ----------------------------------------------~~Di~EGAD~vMVKPal~YLDIi~~vk~~~p~~P 272 (330)
T 1pv8_A 239 ----------------------------------------------DRDVREGADMLMVKPGMPYLDIVREVKDKHPDLP 272 (330)
T ss_dssp ----------------------------------------------HHHHHTTCSBEEEESCGGGHHHHHHHHHHSTTSC
T ss_pred ----------------------------------------------HhhHHhCCceEEEecCccHHHHHHHHHHhcCCCC
Confidence 8999999999999999999999999999999999
Q ss_pred EEeEecccccHHHHHHHhCCCCCHHHHHHHHHHHHHHcCCCEEEecchHHHHHHHhh
Q psy15126 242 LFVYQVSGEYAMLAFAAQAGALDLKRALMETLTCLRRGGADVIISYYTPRVLEWLRE 298 (300)
Q Consensus 242 i~aY~vSgeY~~~r~Aa~~~~~n~~eal~E~~~~~~r~GAD~Ii~y~A~~~ld~l~~ 298 (300)
+++|||||||+|+|+|+++||+|++++++|+|+++||+|||+||||||+++++||++
T Consensus 273 ~aaYqVSGEYAMikaAa~~GwiD~~~~v~Esl~~~kRAGAd~IiTYfA~~~a~~L~~ 329 (330)
T 1pv8_A 273 LAVYHVSGEFAMLWHGAQAGAFDLKAAVLEAMTAFRRAGADIIITYYTPQLLQWLKE 329 (330)
T ss_dssp EEEEECHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHTCSEEEETTHHHHHHHTTT
T ss_pred eEEEEcCcHHHHHHHHHHcCCccHHHHHHHHHHHHHhcCCCEEeeecHHHHHHHhcc
Confidence 999999999999999999999999999999999999999999999999999999986
No 3
>1w1z_A Delta-aminolevulinic acid dehydratase; synthase, tetrapyrrole biosynthesis, ALAD, porphyrin biosynt heme biosynthesis, lyase; 2.6A {Prosthecochloris vibrioformis} SCOP: c.1.10.3 PDB: 2c1h_A*
Probab=100.00 E-value=1.8e-106 Score=760.99 Aligned_cols=241 Identities=43% Similarity=0.713 Sum_probs=237.3
Q ss_pred CCCCcccccCCCCCChHHHHHHHHHHhCCCcEEEeeecCCCCCCCCcceeeCCCCceecHHhHHHHHHHHHHHHHcCCCc
Q psy15126 2 DLRDETASFADTPDNPLFQVIPMIRKQFPSLTIACDVCLCGYTSHGHCAIFNEDGSIHYEKTLKRLADISKAFSDAGAHI 81 (300)
Q Consensus 2 ~~kd~~~s~a~~~~~~~~~~i~~ik~~~p~l~i~~Dvclc~yt~hGHcgi~~~~g~i~nd~Tl~~l~~~A~~~A~aGad~ 81 (300)
+.||+.||+||+|||++|||||.||++||+++|||||||||||+||||||++ +|.|+||+|+++|++||++||+||||+
T Consensus 88 ~~Kd~~gs~A~~~~g~v~rair~iK~~~p~l~vitDvcLc~YT~HGHcGil~-~g~V~ND~Tl~~L~k~Als~A~AGADi 166 (328)
T 1w1z_A 88 EQKTEDGSEAYNDNGILQQAIRAIKKAVPELCIMTDVALDPFTPFGHDGLVK-DGIILNDETVEVLQKMAVSHAEAGADF 166 (328)
T ss_dssp SSCCSSCGGGGCTTSHHHHHHHHHHHHSTTSEEEEEECSTTTSTTSCSSEES-SSCEEHHHHHHHHHHHHHHHHHHTCSE
T ss_pred CCCCccccccCCCCChHHHHHHHHHHHCCCeEEEEeeecccCCCCCceeecc-CCcCccHHHHHHHHHHHHHHHHcCCCe
Confidence 4699999999999999999999999999999999999999999999999996 799999999999999999999999999
Q ss_pred cccCCCCcchHHHHHHHHhhCCCCCCcccccchhhhhcccchhhhhhhcCCCCCCCcceeeCCCCCCceEEEEeecccCC
Q psy15126 82 VAPSDMMDNRIHAIKQSLFTSRQSSTTGLLSYSAKFCSAFYGPFREAAGSAPTFGDRSCYQLPCGSKGLAIRAAVCLCGY 161 (300)
Q Consensus 82 vAPSdmMDgrv~air~aLd~~g~~~~v~ImsysaK~aS~~YGPfRda~gS~~~~gdr~~yQ~~~~~~~~ai~~dvclc~y 161 (300)
|||||||||||++||++||++|| .+|+|||||+||||+||||||||+||+|+||||++|||||+|.+||+|+.
T Consensus 167 VAPSdMMDGrV~aIR~aLd~~G~-~~v~ImsYsaKyASafYGPFRdAa~Sap~fGDrktYQmdpaN~~EAlrE~------ 239 (328)
T 1w1z_A 167 VSPSDMMDGRIGAIREALDETDH-SDVGILSYAAKYASSFYGPFRDALHSAPQFGDKSTYQMNPANTEEAMKEV------ 239 (328)
T ss_dssp EEECSCCTTHHHHHHHHHHHTTC-TTSEEEEEEEEBCCTTCHHHHHHTTCCCCCSCSTTTSBCTTCSHHHHHHH------
T ss_pred EecccccccHHHHHHHHHHhCCC-CCceeeehhHHHhhhccchHHHHhccCCCCCCccccCCCCCCHHHHHHHH------
Confidence 99999999999999999999999 89999999999999999999999999999999999999999999999997
Q ss_pred CCCCccccccCCCcccchHhHHHHHHHHHhhhcccccCCCCCccccchhhhcCCceeeccCcchHHHHHHHHHhhCCCCC
Q psy15126 162 TSHGHCAIFNEDGSIHYEKTLKRLADISKAFSDAVYVPNHNTDRFQARDVSQGADFLMVKPALPYLDIISEVKSRHPAYP 241 (300)
Q Consensus 162 t~hGHcgi~~~~g~i~nd~tl~~l~~~a~~~a~~~~~~~~n~~~~~~~Da~~GADivmVkPsmm~ld~Ir~~~d~~~~vp 241 (300)
++|++||||||||||+|+|||+||++|++| ++|
T Consensus 240 ----------------------------------------------~~Di~EGAD~vMVKPal~YLDIir~vk~~~-~~P 272 (328)
T 1w1z_A 240 ----------------------------------------------ELDIVEGADIVMVKPGLAYLDIVWRTKERF-DVP 272 (328)
T ss_dssp ----------------------------------------------HHHHHHTCSEEEEESCGGGHHHHHHHHHHH-CSC
T ss_pred ----------------------------------------------HhhHHhCCCEEEEcCCCchHHHHHHHHHhc-CCC
Confidence 899999999999999999999999999998 899
Q ss_pred EEeEecccccHHHHHHHhCCCCCHHHHHHHHHHHHHHcCCCEEEecchHHHHHHHh
Q psy15126 242 LFVYQVSGEYAMLAFAAQAGALDLKRALMETLTCLRRGGADVIISYYTPRVLEWLR 297 (300)
Q Consensus 242 i~aY~vSgeY~~~r~Aa~~~~~n~~eal~E~~~~~~r~GAD~Ii~y~A~~~ld~l~ 297 (300)
+++|||||||+|+|+|+++||+|++++++|+++++||+|||+||||||+++++||+
T Consensus 273 ~aaYqVSGEYAMikaAa~~GwiD~~~~v~Esl~~~kRAGAd~IiTYfA~~~a~~L~ 328 (328)
T 1w1z_A 273 VAIYHVSGEYAMVKAAAAKGWIDEDRVMMESLLCMKRAGADIIFTYYAKEAAKKLR 328 (328)
T ss_dssp EEEEECHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHTCSEEEETTHHHHHHHHC
T ss_pred EEEEEccHHHHHHHHHHHcCCccHHHHHHHHHHHHHhcCCCEEeeecHHHHHHhhC
Confidence 99999999999999999999999999999999999999999999999999999995
No 4
>1w5q_A Delta-aminolevulinic acid dehydratase; synthase, evolution, metalloenzyme, porphobilinogen synthase, protein engineering,; 1.4A {Pseudomonas aeruginosa} PDB: 1w5p_A* 1w5o_A 1w5n_A 1w56_A 1w5m_A 1w54_A 1gzg_A* 1b4k_A 2woq_A* 2c14_A* 2c16_A* 2c19_A* 2c15_A* 2c18_A* 2c13_A*
Probab=100.00 E-value=2.9e-106 Score=761.73 Aligned_cols=242 Identities=42% Similarity=0.742 Sum_probs=229.8
Q ss_pred CCCcccccCCCCCChHHHHHHHHHHhCCCcEEEeeecCCCCCCCCcceeeCCCCceecHHhHHHHHHHHHHHHHcCCCcc
Q psy15126 3 LRDETASFADTPDNPLFQVIPMIRKQFPSLTIACDVCLCGYTSHGHCAIFNEDGSIHYEKTLKRLADISKAFSDAGAHIV 82 (300)
Q Consensus 3 ~kd~~~s~a~~~~~~~~~~i~~ik~~~p~l~i~~Dvclc~yt~hGHcgi~~~~g~i~nd~Tl~~l~~~A~~~A~aGad~v 82 (300)
+||+.||+||+|||++|||||.||++||+|+|||||||||||+||||||++++|.|+||+|+++|++||++||+||||+|
T Consensus 93 ~KD~~gs~A~~~~g~v~rair~iK~~~pdl~vitDvcLc~YT~HGHcGil~~~g~V~ND~Tl~~L~k~Als~A~AGADiV 172 (337)
T 1w5q_A 93 KKSLDAAEAYNPEGIAQRATRALRERFPELGIITDVCLCEFTTHGQCGILDDDGYVLNDVSIDVLVRQALSHAEAGAQVV 172 (337)
T ss_dssp GCBSSCGGGGCTTSHHHHHHHHHHHHCTTSEEEEEECSTTTBTTCCSSCBCTTSCBCHHHHHHHHHHHHHHHHHTTCSEE
T ss_pred cCCcccCccCCCCChHHHHHHHHHHHCCCeEEEEeeecccCCCCCcceeeCCCCcCccHHHHHHHHHHHHHHHHcCCCeE
Confidence 59999999999999999999999999999999999999999999999999878999999999999999999999999999
Q ss_pred ccCCCCcchHHHHHHHHhhCCCCCCcccccchhhhhcccchhhhhhhcCCCCC--CCcceeeCCCCCCceEEEEeecccC
Q psy15126 83 APSDMMDNRIHAIKQSLFTSRQSSTTGLLSYSAKFCSAFYGPFREAAGSAPTF--GDRSCYQLPCGSKGLAIRAAVCLCG 160 (300)
Q Consensus 83 APSdmMDgrv~air~aLd~~g~~~~v~ImsysaK~aS~~YGPfRda~gS~~~~--gdr~~yQ~~~~~~~~ai~~dvclc~ 160 (300)
||||||||||++||++||++|| .+|+|||||+||||+||||||||++|+|+| |||++|||||+|.+||+|+.
T Consensus 173 APSdMMDGrV~aIR~aLd~~G~-~~v~ImsYsaKyASafYGPFRdAa~Sap~f~~GDrktYQmdpaN~~EAlrE~----- 246 (337)
T 1w5q_A 173 APSDMMDGRIGAIREALESAGH-TNVRVMAYSAKYASAYYGPFRDAVGSASNLGKGNRATYQMDPANSDEALHEV----- 246 (337)
T ss_dssp EECSCCTTHHHHHHHHHHHTTC-TTCEEEEEEEEBCCGGGHHHHHC----------CGGGTSBCTTCSHHHHHHH-----
T ss_pred ecccccccHHHHHHHHHHHCCC-CCceeehhHHHHHHHHHHHHHHHhcCCcccCCCCccccCCCCCChHHHHHHH-----
Confidence 9999999999999999999999 899999999999999999999999999999 99999999999999999997
Q ss_pred CCCCCccccccCCCcccchHhHHHHHHHHHhhhcccccCCCCCccccchhhhcCCceeeccCcchHHHHHHHHHhhCCCC
Q psy15126 161 YTSHGHCAIFNEDGSIHYEKTLKRLADISKAFSDAVYVPNHNTDRFQARDVSQGADFLMVKPALPYLDIISEVKSRHPAY 240 (300)
Q Consensus 161 yt~hGHcgi~~~~g~i~nd~tl~~l~~~a~~~a~~~~~~~~n~~~~~~~Da~~GADivmVkPsmm~ld~Ir~~~d~~~~v 240 (300)
++|++||||||||||+|+|||+||++|++| ++
T Consensus 247 -----------------------------------------------~~Di~EGAD~vMVKPal~YLDIir~vk~~~-~~ 278 (337)
T 1w5q_A 247 -----------------------------------------------AADLAEGADMVMVKPGMPYLDIVRRVKDEF-RA 278 (337)
T ss_dssp -----------------------------------------------HHHHHTTCSEEEEESCGGGHHHHHHHHHHH-CS
T ss_pred -----------------------------------------------HhhHHhCCCEEEEcCCCchHHHHHHHHHhc-CC
Confidence 899999999999999999999999999998 89
Q ss_pred CEEeEecccccHHHHHHHhCCCCCHHHHHHHHHHHHHHcCCCEEEecchHHHHHHHhhC
Q psy15126 241 PLFVYQVSGEYAMLAFAAQAGALDLKRALMETLTCLRRGGADVIISYYTPRVLEWLRED 299 (300)
Q Consensus 241 pi~aY~vSgeY~~~r~Aa~~~~~n~~eal~E~~~~~~r~GAD~Ii~y~A~~~ld~l~~~ 299 (300)
|+++|||||||+|+|+|+++||+| +++++|+|+++||+|||+||||||+++++||++.
T Consensus 279 PvaaYqVSGEYAMikaAa~~GwiD-~~~v~Esl~~~kRAGAd~IiTYfA~~~a~~L~~~ 336 (337)
T 1w5q_A 279 PTFVYQVSGEYAMHMGAIQNGWLA-ESVILESLTAFKRAGADGILTYFAKQAAEQLRRG 336 (337)
T ss_dssp CEEEEECHHHHHHHHHHHHTTSSC-TTHHHHHHHHHHHHTCSEEEETTHHHHHHHHHC-
T ss_pred CEEEEEcCcHHHHHHHHHHcCCcc-HHHHHHHHHHHHhcCCCEEeeecHHHHHHHHhcC
Confidence 999999999999999999999999 9999999999999999999999999999999864
No 5
>3obk_A Delta-aminolevulinic acid dehydratase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, lyase; HET: PBG; 2.50A {Toxoplasma gondii ME49}
Probab=100.00 E-value=7.6e-106 Score=762.60 Aligned_cols=244 Identities=39% Similarity=0.673 Sum_probs=239.2
Q ss_pred CCCCcccccCCCCCChHHHHHHHHHHhCCCcEEEeeecCCCCCCCCcceeeCC-CCceecHHhHHHHHHHHHHHHHcCCC
Q psy15126 2 DLRDETASFADTPDNPLFQVIPMIRKQFPSLTIACDVCLCGYTSHGHCAIFNE-DGSIHYEKTLKRLADISKAFSDAGAH 80 (300)
Q Consensus 2 ~~kd~~~s~a~~~~~~~~~~i~~ik~~~p~l~i~~Dvclc~yt~hGHcgi~~~-~g~i~nd~Tl~~l~~~A~~~A~aGad 80 (300)
++||+.||+||+|||++|||||.||++||+|+|||||||||||+||||||+++ +|.|+||+||++|++||++||+||||
T Consensus 99 ~~KD~~gs~A~~~~g~v~rAir~iK~~~P~l~VitDVcLc~YT~HGHcGil~~~~g~V~ND~Tl~~Lak~Als~A~AGAD 178 (356)
T 3obk_A 99 ELKSVMAEESYNPDGLLPRAIMALKEAFPDVLLLADVALDPYSSMGHDGVVDEQSGKIVNDLTVHQLCKQAITLARAGAD 178 (356)
T ss_dssp GGCBSSCGGGGCTTSHHHHHHHHHHHHSTTCEEEEEECSGGGBTTCCSSCBCTTTCCBCHHHHHHHHHHHHHHHHHHTCS
T ss_pred ccCCcccccccCCCChHHHHHHHHHHHCCCCEEEEeeccccccCCCcceeeeCCCCCCCCHHHHHHHHHHHHHHHHcCCC
Confidence 47999999999999999999999999999999999999999999999999976 49999999999999999999999999
Q ss_pred ccccCCCCcchHHHHHHHHhhCCCCCCcccccchhhhhcccchhhhhhhcCC-CCCCCcceeeCCCCCCceEEEEeeccc
Q psy15126 81 IVAPSDMMDNRIHAIKQSLFTSRQSSTTGLLSYSAKFCSAFYGPFREAAGSA-PTFGDRSCYQLPCGSKGLAIRAAVCLC 159 (300)
Q Consensus 81 ~vAPSdmMDgrv~air~aLd~~g~~~~v~ImsysaK~aS~~YGPfRda~gS~-~~~gdr~~yQ~~~~~~~~ai~~dvclc 159 (300)
+|||||||||||++||++||++|| .+|+|||||+||||+||||||||+||+ |.||||++|||||+|.+||+|+.
T Consensus 179 iVAPSdMMDGrV~aIR~aLd~~G~-~~v~IMsYsaKyASafYGPFRdAa~Sa~p~~GDRktYQmdpaN~~EAlrE~---- 253 (356)
T 3obk_A 179 MVCPSDMMDGRVSAIRESLDMEGC-TDTSILAYSCKYASSFYGPFRDALDSHMVGGTDKKTYQMDPSNSREAEREA---- 253 (356)
T ss_dssp EEEECSCCTTHHHHHHHHHHHTTC-TTSEEEEEEEEBCCSTTHHHHHHHTCCCSTTCCSTTTSBCTTCSHHHHHHH----
T ss_pred eEeccccccCHHHHHHHHHHHCCC-CCcceehhHHHHhhhccchhhHHhcCCCCCCCCccccCCCCCCHHHHHHHH----
Confidence 999999999999999999999999 899999999999999999999999999 99999999999999999999997
Q ss_pred CCCCCCccccccCCCcccchHhHHHHHHHHHhhhcccccCCCCCccccchhhhcCCceeeccCcchHHHHHHHHHhhCCC
Q psy15126 160 GYTSHGHCAIFNEDGSIHYEKTLKRLADISKAFSDAVYVPNHNTDRFQARDVSQGADFLMVKPALPYLDIISEVKSRHPA 239 (300)
Q Consensus 160 ~yt~hGHcgi~~~~g~i~nd~tl~~l~~~a~~~a~~~~~~~~n~~~~~~~Da~~GADivmVkPsmm~ld~Ir~~~d~~~~ 239 (300)
++|++||||||||||+|+|||+||++|++| +
T Consensus 254 ------------------------------------------------~lDi~EGAD~vMVKPal~YLDIi~~vk~~~-~ 284 (356)
T 3obk_A 254 ------------------------------------------------EADASEGADMLMVKPGLPYLDVLAKIREKS-K 284 (356)
T ss_dssp ------------------------------------------------HHHHHTTCSEEEEESSGGGHHHHHHHHHHC-S
T ss_pred ------------------------------------------------HhhHhcCCCEEEecCCCcHHHHHHHHHhcC-C
Confidence 899999999999999999999999999997 8
Q ss_pred CCEEeEecccccHHHHHHHhCCCCCHHHHHHHHHHHHHHcCCCEEEecchHHHHHHHhhC
Q psy15126 240 YPLFVYQVSGEYAMLAFAAQAGALDLKRALMETLTCLRRGGADVIISYYTPRVLEWLRED 299 (300)
Q Consensus 240 vpi~aY~vSgeY~~~r~Aa~~~~~n~~eal~E~~~~~~r~GAD~Ii~y~A~~~ld~l~~~ 299 (300)
+|+++|||||||+|+|+|+++||+|++++++|+|+++||+|||+|+||||+++++||++.
T Consensus 285 ~PvaaYqVSGEYAMikAAa~~GwiD~~~~v~Esl~~~kRAGAd~IiTYfA~~~a~~L~~~ 344 (356)
T 3obk_A 285 LPMVAYHVSGEYAMLKAAAEKGYISEKDTVLEVLKSFRRAGADAVATYYAKEAAKWMVED 344 (356)
T ss_dssp SCEEEEECHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHTCSEEEETTHHHHHHHHHHH
T ss_pred CCEEEEEccHHHHHHHHHHHcCCccHHHHHHHHHHHHHHcCCCEEehhhHHHHHHHHHhc
Confidence 999999999999999999999999999999999999999999999999999999999864
No 6
>1l6s_A Porphobilinogen synthase; dehydratase, lyase; HET: CME DSB; 1.70A {Escherichia coli} SCOP: c.1.10.3 PDB: 1i8j_A* 1l6y_A* 1b4e_A
Probab=100.00 E-value=1.2e-104 Score=747.38 Aligned_cols=240 Identities=43% Similarity=0.695 Sum_probs=236.0
Q ss_pred CCCCcccccCCCCCChHHHHHHHHHHhCCCcEEEeeecCCCCCCCCcceeeCCCCceecHHhHHHHHHHHHHHHHcCCCc
Q psy15126 2 DLRDETASFADTPDNPLFQVIPMIRKQFPSLTIACDVCLCGYTSHGHCAIFNEDGSIHYEKTLKRLADISKAFSDAGAHI 81 (300)
Q Consensus 2 ~~kd~~~s~a~~~~~~~~~~i~~ik~~~p~l~i~~Dvclc~yt~hGHcgi~~~~g~i~nd~Tl~~l~~~A~~~A~aGad~ 81 (300)
+.||+.||+||+|||++|||||.||++||+++|||||||||||+||||||++ +|.|+||+|+++|++||++||+||||+
T Consensus 82 ~~Kd~~gs~A~~~~g~v~rair~iK~~~pdl~vitDvcLc~YT~HGHcGil~-~g~V~ND~Tl~~Lak~Als~A~AGAdi 160 (323)
T 1l6s_A 82 HHTDETGSDAWREDGLVARMSRICKQTVPEMIVMSDTCFCEYTSHGHCGVLC-EHGVDNDATLENLGKQAVVAAAAGADF 160 (323)
T ss_dssp SSCBSSCGGGGSTTSHHHHHHHHHHHHCTTSEEEEEECSTTTBSSCCSSCBC-SSSBCHHHHHHHHHHHHHHHHHHTCSE
T ss_pred CCCCccccccCCCCCcHHHHHHHHHHHCCCeEEEEeeeccccCCCCceEecc-CCcCccHHHHHHHHHHHHHHHHcCCCe
Confidence 4699999999999999999999999999999999999999999999999995 799999999999999999999999999
Q ss_pred cccCCCCcchHHHHHHHHhhCCCCCCcccccchhhhhcccchhhhhhhcCCCCCCCcceeeCCCCCCceEEEEeecccCC
Q psy15126 82 VAPSDMMDNRIHAIKQSLFTSRQSSTTGLLSYSAKFCSAFYGPFREAAGSAPTFGDRSCYQLPCGSKGLAIRAAVCLCGY 161 (300)
Q Consensus 82 vAPSdmMDgrv~air~aLd~~g~~~~v~ImsysaK~aS~~YGPfRda~gS~~~~gdr~~yQ~~~~~~~~ai~~dvclc~y 161 (300)
|||||||||||++||++||++|| .+|+|||||+||||+||||||||++|+|+ |||++|||||+|.+|++++.
T Consensus 161 VAPSdMMDGrV~aIR~aLd~~G~-~~v~ImsYsaKyASafYGPFRdAa~Sap~-GDRktYQmdpaN~~EAlre~------ 232 (323)
T 1l6s_A 161 IAPSAAMDGQVQAIRQALDAAGF-KDTAIMSYSTKFASSFYGPFREAAGSALK-GDRKSYQMNPMNRREAIRES------ 232 (323)
T ss_dssp EEECSCCTTHHHHHHHHHHHTTC-TTCEEBCCCEEBCCSCCHHHHHHHTCCCS-SCCTTTSBCTTCHHHHHHHH------
T ss_pred EecccccccHHHHHHHHHHhCCC-CCceeeehhHHHhHHhhHHHHHHhcCCCC-CCccccCCCCCCHHHHHHHH------
Confidence 99999999999999999999999 89999999999999999999999999999 99999999999999999997
Q ss_pred CCCCccccccCCCcccchHhHHHHHHHHHhhhcccccCCCCCccccchhhhcCCceeeccCcchHHHHHHHHHhhCCCCC
Q psy15126 162 TSHGHCAIFNEDGSIHYEKTLKRLADISKAFSDAVYVPNHNTDRFQARDVSQGADFLMVKPALPYLDIISEVKSRHPAYP 241 (300)
Q Consensus 162 t~hGHcgi~~~~g~i~nd~tl~~l~~~a~~~a~~~~~~~~n~~~~~~~Da~~GADivmVkPsmm~ld~Ir~~~d~~~~vp 241 (300)
++|++||||||||||+|+|||+||++|++| ++|
T Consensus 233 ----------------------------------------------~~Di~EGAD~vMVKPal~YLDIi~~vk~~~-~~P 265 (323)
T 1l6s_A 233 ----------------------------------------------LLDEAQGADCLMVKPAGAYLDIVRELRERT-ELP 265 (323)
T ss_dssp ----------------------------------------------HHHHHTTCSBEEEESCTTCHHHHHHHHTTC-SSC
T ss_pred ----------------------------------------------HhhHHhCCceEEEecCcchhHHHHHHHHhc-CCC
Confidence 899999999999999999999999999998 899
Q ss_pred EEeEecccccHHHHHHHhCCCCCHHHHHHHHHHHHHHcCCCEEEecchHHHHHHHh
Q psy15126 242 LFVYQVSGEYAMLAFAAQAGALDLKRALMETLTCLRRGGADVIISYYTPRVLEWLR 297 (300)
Q Consensus 242 i~aY~vSgeY~~~r~Aa~~~~~n~~eal~E~~~~~~r~GAD~Ii~y~A~~~ld~l~ 297 (300)
+++|||||||+|+|+|+++||+|++++++|+|+++||+|||+||||||+++++||.
T Consensus 266 ~aaYqVSGEYAMikaAa~~GwiD~~~~vlEsl~~~kRAGAd~IiTYfA~~~a~~~~ 321 (323)
T 1l6s_A 266 IGAYQVSGEYAMIKFAALAGAIDEEKVVLESLGSIKRAGADLIFSYFALDLAEKKI 321 (323)
T ss_dssp EEEEECHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHTTCSEEEETTHHHHHHTTS
T ss_pred eEEEEcCcHHHHHHHHHHcCCccHHHHHHHHHHHHHhcCCCEEeehhHHHHHHHhh
Confidence 99999999999999999999999999999999999999999999999999999985
No 7
>1w5q_A Delta-aminolevulinic acid dehydratase; synthase, evolution, metalloenzyme, porphobilinogen synthase, protein engineering,; 1.4A {Pseudomonas aeruginosa} PDB: 1w5p_A* 1w5o_A 1w5n_A 1w56_A 1w5m_A 1w54_A 1gzg_A* 1b4k_A 2woq_A* 2c14_A* 2c16_A* 2c19_A* 2c15_A* 2c18_A* 2c13_A*
Probab=100.00 E-value=9.8e-52 Score=390.56 Aligned_cols=189 Identities=21% Similarity=0.308 Sum_probs=171.5
Q ss_pred ecHHhHHHHHHHHHHHHHcCCCccccCCC--CcchHHHHHHHHhhCCCCCCcccccchhhhhcccchhhhhhhcCCCCCC
Q psy15126 59 HYEKTLKRLADISKAFSDAGAHIVAPSDM--MDNRIHAIKQSLFTSRQSSTTGLLSYSAKFCSAFYGPFREAAGSAPTFG 136 (300)
Q Consensus 59 ~nd~Tl~~l~~~A~~~A~aGad~vAPSdm--MDgrv~air~aLd~~g~~~~v~ImsysaK~aS~~YGPfRda~gS~~~~g 136 (300)
..+.|++.|.+.+..+.++|+..|..=.. -..+.....++++++|+ .+
T Consensus 60 v~r~sid~l~~~~~~~~~lGi~~v~LFgv~~~~~KD~~gs~A~~~~g~-v~----------------------------- 109 (337)
T 1w5q_A 60 VERLSIDQLLIEAEEWVALGIPALALFPVTPVEKKSLDAAEAYNPEGI-AQ----------------------------- 109 (337)
T ss_dssp CEEEEHHHHHHHHHHHHHTTCCEEEEEECCCGGGCBSSCGGGGCTTSH-HH-----------------------------
T ss_pred ceeeCHHHHHHHHHHHHHCCCCEEEEecCCCcccCCcccCccCCCCCh-HH-----------------------------
Confidence 47789999999999999999998887322 22366667788888888 44
Q ss_pred CcceeeCCCCCCceEEEEeecccCCCCCCccccccCCCcccchHhHHHHHHHHHhhhcccccCCCCCccccchhhhcCCc
Q psy15126 137 DRSCYQLPCGSKGLAIRAAVCLCGYTSHGHCAIFNEDGSIHYEKTLKRLADISKAFSDAVYVPNHNTDRFQARDVSQGAD 216 (300)
Q Consensus 137 dr~~yQ~~~~~~~~ai~~dvclc~yt~hGHcgi~~~~g~i~nd~tl~~l~~~a~~~a~~~~~~~~n~~~~~~~Da~~GAD 216 (300)
|.+..++..+|++.|++||||||||+||||||++++|.|+||+||++|+++|++| +++|||
T Consensus 110 -rair~iK~~~pdl~vitDvcLc~YT~HGHcGil~~~g~V~ND~Tl~~L~k~Als~------------------A~AGAD 170 (337)
T 1w5q_A 110 -RATRALRERFPELGIITDVCLCEFTTHGQCGILDDDGYVLNDVSIDVLVRQALSH------------------AEAGAQ 170 (337)
T ss_dssp -HHHHHHHHHCTTSEEEEEECSTTTBTTCCSSCBCTTSCBCHHHHHHHHHHHHHHH------------------HHTTCS
T ss_pred -HHHHHHHHHCCCeEEEEeeecccCCCCCcceeeCCCCcCccHHHHHHHHHHHHHH------------------HHcCCC
Confidence 8888999999999999999999999999999998889999999999999999999 699999
Q ss_pred eeeccCc-ch--HHHHHHHHHhh--CCCCCEEeEec---ccccHHHHHHH--------------hCCCCCHHHHHHHHHH
Q psy15126 217 FLMVKPA-LP--YLDIISEVKSR--HPAYPLFVYQV---SGEYAMLAFAA--------------QAGALDLKRALMETLT 274 (300)
Q Consensus 217 ivmVkPs-mm--~ld~Ir~~~d~--~~~vpi~aY~v---SgeY~~~r~Aa--------------~~~~~n~~eal~E~~~ 274 (300)
|| +|| || ++.+||++||. |.++|||||++ |++|||||+|+ |+++.|.+||++|+.+
T Consensus 171 iV--APSdMMDGrV~aIR~aLd~~G~~~v~ImsYsaKyASafYGPFRdAa~Sap~f~~GDrktYQmdpaN~~EAlrE~~~ 248 (337)
T 1w5q_A 171 VV--APSDMMDGRIGAIREALESAGHTNVRVMAYSAKYASAYYGPFRDAVGSASNLGKGNRATYQMDPANSDEALHEVAA 248 (337)
T ss_dssp EE--EECSCCTTHHHHHHHHHHHTTCTTCEEEEEEEEBCCGGGHHHHHC----------CGGGTSBCTTCSHHHHHHHHH
T ss_pred eE--ecccccccHHHHHHHHHHHCCCCCceeehhHHHHHHHHHHHHHHHhcCCcccCCCCccccCCCCCChHHHHHHHHh
Confidence 99 999 77 99999999988 89999999999 99999999998 5689999999999999
Q ss_pred HHHHcCCCEEEecchHHHHHHHhhC
Q psy15126 275 CLRRGGADVIISYYTPRVLEWLRED 299 (300)
Q Consensus 275 ~~~r~GAD~Ii~y~A~~~ld~l~~~ 299 (300)
|+ +||||||||||+++|||++++.
T Consensus 249 Di-~EGAD~vMVKPal~YLDIir~v 272 (337)
T 1w5q_A 249 DL-AEGADMVMVKPGMPYLDIVRRV 272 (337)
T ss_dssp HH-HTTCSEEEEESCGGGHHHHHHH
T ss_pred hH-HhCCCEEEEcCCCchHHHHHHH
Confidence 99 7999999999999999999875
No 8
>1w1z_A Delta-aminolevulinic acid dehydratase; synthase, tetrapyrrole biosynthesis, ALAD, porphyrin biosynt heme biosynthesis, lyase; 2.6A {Prosthecochloris vibrioformis} SCOP: c.1.10.3 PDB: 2c1h_A*
Probab=100.00 E-value=8.1e-52 Score=390.03 Aligned_cols=188 Identities=19% Similarity=0.260 Sum_probs=173.0
Q ss_pred ecHHhHHHHHHHHHHHHHcCCCccccCCCCcchHHHHHHHHhhCCCCCCcccccchhhhhcccchhhhhhhcCCCCCCCc
Q psy15126 59 HYEKTLKRLADISKAFSDAGAHIVAPSDMMDNRIHAIKQSLFTSRQSSTTGLLSYSAKFCSAFYGPFREAAGSAPTFGDR 138 (300)
Q Consensus 59 ~nd~Tl~~l~~~A~~~A~aGad~vAPSdmMDgrv~air~aLd~~g~~~~v~ImsysaK~aS~~YGPfRda~gS~~~~gdr 138 (300)
..+.|++.|.+.+..+.++|+..|..=..-+.+.....++++++|+ .+ |
T Consensus 58 v~r~sid~l~~~~~~~~~lGi~~v~LFgvp~~Kd~~gs~A~~~~g~-v~------------------------------r 106 (328)
T 1w1z_A 58 SFRFTIDRAVEECKELYDLGIQGIDLFGIPEQKTEDGSEAYNDNGI-LQ------------------------------Q 106 (328)
T ss_dssp EEEEEHHHHHHHHHHHHHHTCCEEEEEECCSSCCSSCGGGGCTTSH-HH------------------------------H
T ss_pred eeEeCHHHHHHHHHHHHHCCCCEEEEECCCCCCCccccccCCCCCh-HH------------------------------H
Confidence 4778999999999999999999888733334477778888888888 54 8
Q ss_pred ceeeCCCCCCceEEEEeecccCCCCCCccccccCCCcccchHhHHHHHHHHHhhhcccccCCCCCccccchhhhcCCcee
Q psy15126 139 SCYQLPCGSKGLAIRAAVCLCGYTSHGHCAIFNEDGSIHYEKTLKRLADISKAFSDAVYVPNHNTDRFQARDVSQGADFL 218 (300)
Q Consensus 139 ~~yQ~~~~~~~~ai~~dvclc~yt~hGHcgi~~~~g~i~nd~tl~~l~~~a~~~a~~~~~~~~n~~~~~~~Da~~GADiv 218 (300)
.+..++..+|++.|++||||||||+||||||++ +|.|+||+||++|+++|++| +++|||||
T Consensus 107 air~iK~~~p~l~vitDvcLc~YT~HGHcGil~-~g~V~ND~Tl~~L~k~Als~------------------A~AGADiV 167 (328)
T 1w1z_A 107 AIRAIKKAVPELCIMTDVALDPFTPFGHDGLVK-DGIILNDETVEVLQKMAVSH------------------AEAGADFV 167 (328)
T ss_dssp HHHHHHHHSTTSEEEEEECSTTTSTTSCSSEES-SSCEEHHHHHHHHHHHHHHH------------------HHHTCSEE
T ss_pred HHHHHHHHCCCeEEEEeeecccCCCCCceeecc-CCcCccHHHHHHHHHHHHHH------------------HHcCCCeE
Confidence 888999999999999999999999999999996 79999999999999999999 69999999
Q ss_pred eccCc-ch--HHHHHHHHHhh--CCCCCEEeEec---ccccHHHHHHH------------hCCCCCHHHHHHHHHHHHHH
Q psy15126 219 MVKPA-LP--YLDIISEVKSR--HPAYPLFVYQV---SGEYAMLAFAA------------QAGALDLKRALMETLTCLRR 278 (300)
Q Consensus 219 mVkPs-mm--~ld~Ir~~~d~--~~~vpi~aY~v---SgeY~~~r~Aa------------~~~~~n~~eal~E~~~~~~r 278 (300)
+|| || ++.+||++||. |.++|||||++ |++|||||+|+ |+++.|.+||++|+.+|+ +
T Consensus 168 --APSdMMDGrV~aIR~aLd~~G~~~v~ImsYsaKyASafYGPFRdAa~Sap~fGDrktYQmdpaN~~EAlrE~~~Di-~ 244 (328)
T 1w1z_A 168 --SPSDMMDGRIGAIREALDETDHSDVGILSYAAKYASSFYGPFRDALHSAPQFGDKSTYQMNPANTEEAMKEVELDI-V 244 (328)
T ss_dssp --EECSCCTTHHHHHHHHHHHTTCTTSEEEEEEEEBCCTTCHHHHHHTTCCCCCSCSTTTSBCTTCSHHHHHHHHHHH-H
T ss_pred --ecccccccHHHHHHHHHHhCCCCCceeeehhHHHhhhccchHHHHhccCCCCCCccccCCCCCCHHHHHHHHHhhH-H
Confidence 999 77 99999999988 89999999999 99999999998 678999999999999999 7
Q ss_pred cCCCEEEecchHHHHHHHhhC
Q psy15126 279 GGADVIISYYTPRVLEWLRED 299 (300)
Q Consensus 279 ~GAD~Ii~y~A~~~ld~l~~~ 299 (300)
||||||||||+++|||++++.
T Consensus 245 EGAD~vMVKPal~YLDIir~v 265 (328)
T 1w1z_A 245 EGADIVMVKPGLAYLDIVWRT 265 (328)
T ss_dssp HTCSEEEEESCGGGHHHHHHH
T ss_pred hCCCEEEEcCCCchHHHHHHH
Confidence 999999999999999999875
No 9
>1pv8_A Delta-aminolevulinic acid dehydratase; porphobilinogen synthase, tetrapyrrole biosynthesis, reactio intermediate, lyase; HET: PB1; 2.20A {Homo sapiens} SCOP: c.1.10.3 PDB: 1e51_A* 2z0i_A 2z1b_A
Probab=100.00 E-value=1.1e-51 Score=389.66 Aligned_cols=189 Identities=23% Similarity=0.306 Sum_probs=148.7
Q ss_pred ecHHhHHHHHHHHHHHHHcCCCccccCCCCcc--hHHHHHHHHhhCCCCCCcccccchhhhhcccchhhhhhhcCCCCCC
Q psy15126 59 HYEKTLKRLADISKAFSDAGAHIVAPSDMMDN--RIHAIKQSLFTSRQSSTTGLLSYSAKFCSAFYGPFREAAGSAPTFG 136 (300)
Q Consensus 59 ~nd~Tl~~l~~~A~~~A~aGad~vAPSdmMDg--rv~air~aLd~~g~~~~v~ImsysaK~aS~~YGPfRda~gS~~~~g 136 (300)
..+.|++.|.+.+..+.++|+..|..=..-+. +.....++++++|+ .+
T Consensus 53 v~r~sid~l~~~~~~~~~~Gi~~v~LFgvp~~~~Kd~~gs~A~~~~g~-v~----------------------------- 102 (330)
T 1pv8_A 53 VARYGVKRLEEMLRPLVEEGLRCVLIFGVPSRVPKDERGSAADSEESP-AI----------------------------- 102 (330)
T ss_dssp CEEECHHHHHHHHHHHHHHTCCEEEEEECC--------------CCSH-HH-----------------------------
T ss_pred ceeecHHHHHHHHHHHHHCCCCEEEEecCCcccCCCccccccCCCCCh-HH-----------------------------
Confidence 46789999999999999999999987333333 88889999999998 55
Q ss_pred CcceeeCCCCCCceEEEEeecccCCCCCCccccccCCCcccchHhHHHHHHHHHhhhcccccCCCCCccccchhhhcCCc
Q psy15126 137 DRSCYQLPCGSKGLAIRAAVCLCGYTSHGHCAIFNEDGSIHYEKTLKRLADISKAFSDAVYVPNHNTDRFQARDVSQGAD 216 (300)
Q Consensus 137 dr~~yQ~~~~~~~~ai~~dvclc~yt~hGHcgi~~~~g~i~nd~tl~~l~~~a~~~a~~~~~~~~n~~~~~~~Da~~GAD 216 (300)
|.+..++..+|++.|++||||||||+||||||++++|.|+||+||++|+++|++| +++|||
T Consensus 103 -~air~iK~~~pdl~vitDvcLc~YT~HGHcGil~~~g~v~ND~Tl~~La~~Als~------------------A~AGAd 163 (330)
T 1pv8_A 103 -EAIHLLRKTFPNLLVACDVCLCPYTSHGHCGLLSENGAFRAEESRQRLAEVALAY------------------AKAGCQ 163 (330)
T ss_dssp -HHHHHHHHHSTTSEEEEEECCC---------------CHHHHHHHHHHHHHHHHH------------------HHHTCS
T ss_pred -HHHHHHHHHCCCeEEEEeeecccccCCCceeEECCCCcCccHHHHHHHHHHHHHH------------------HHcCCC
Confidence 8888999999999999999999999999999998889999999999999999999 699999
Q ss_pred eeeccCc-ch--HHHHHHHHHhh--CCC-CCEEeEec---ccccHHHHHHH------------hCCCCCHHHHHHHHHHH
Q psy15126 217 FLMVKPA-LP--YLDIISEVKSR--HPA-YPLFVYQV---SGEYAMLAFAA------------QAGALDLKRALMETLTC 275 (300)
Q Consensus 217 ivmVkPs-mm--~ld~Ir~~~d~--~~~-vpi~aY~v---SgeY~~~r~Aa------------~~~~~n~~eal~E~~~~ 275 (300)
|| +|| || ++.+||++|+. |.+ +|||||++ |++|||||+|+ |+++.|.+||++|+.+|
T Consensus 164 iV--APSdMMDGrV~aIR~aLd~~G~~~~v~ImsYsaKyASafYGPFRdAa~Sap~~GDRktYQmdpaN~~EAlre~~~D 241 (330)
T 1pv8_A 164 VV--APSDMMDGRVEAIKEALMAHGLGNRVSVMSYSAKFASCFYGPFRDAAKSSPAFGDRRCYQLPPGARGLALRAVDRD 241 (330)
T ss_dssp EE--EECC--CCHHHHHHHHHHHTTCTTTCEEBCCCEECCCGGGHHHHHCC-------------CCTTCHHHHHHHHHHH
T ss_pred ee--ecccccccHHHHHHHHHHhCCCcCCceEeehhHHHhHhhhhHHHHHHhcCCCCCCccccCCCCCCHHHHHHHHHhh
Confidence 99 999 77 99999999988 888 99999999 99999999997 68999999999999999
Q ss_pred HHHcCCCEEEecchHHHHHHHhhC
Q psy15126 276 LRRGGADVIISYYTPRVLEWLRED 299 (300)
Q Consensus 276 ~~r~GAD~Ii~y~A~~~ld~l~~~ 299 (300)
+ +||||||||||+++|||++++.
T Consensus 242 i-~EGAD~vMVKPal~YLDIi~~v 264 (330)
T 1pv8_A 242 V-REGADMLMVKPGMPYLDIVREV 264 (330)
T ss_dssp H-HTTCSBEEEESCGGGHHHHHHH
T ss_pred H-HhCCceEEEecCccHHHHHHHH
Confidence 9 7999999999999999999875
No 10
>1h7n_A 5-aminolaevulinic acid dehydratase; lyase, aldolase, TIM barrel, tetrapyrrole synthesis; HET: SHF; 1.6A {Saccharomyces cerevisiae} SCOP: c.1.10.3 PDB: 1h7p_A* 1h7r_A* 1ohl_A* 1qml_A 1qnv_A 1w31_A* 1h7o_A* 1eb3_A* 1gjp_A* 1ylv_A* 1aw5_A
Probab=100.00 E-value=2.7e-51 Score=388.40 Aligned_cols=189 Identities=23% Similarity=0.252 Sum_probs=171.7
Q ss_pred ecHHhHHHHHHHHHHHHHcCCCccccCCC-Cc--chHHHHHHHHhhCCCCCCcccccchhhhhcccchhhhhhhcCCCCC
Q psy15126 59 HYEKTLKRLADISKAFSDAGAHIVAPSDM-MD--NRIHAIKQSLFTSRQSSTTGLLSYSAKFCSAFYGPFREAAGSAPTF 135 (300)
Q Consensus 59 ~nd~Tl~~l~~~A~~~A~aGad~vAPSdm-MD--grv~air~aLd~~g~~~~v~ImsysaK~aS~~YGPfRda~gS~~~~ 135 (300)
..+.|++.|.+.+..+.++|+..|..=.. .+ -+.....++++++|+ .+
T Consensus 63 v~r~sid~l~~~~~~~~~lGi~~v~LFgv~~~~~~KD~~gs~A~~~~g~-v~---------------------------- 113 (342)
T 1h7n_A 63 INRIGVNRLKDYLKPLVAKGLRSVILFGVPLIPGTKDPVGTAADDPAGP-VI---------------------------- 113 (342)
T ss_dssp CEEECHHHHHHHHHHHHHTTCCEEEEEEECCSTTCCBTTCGGGGCTTSH-HH----------------------------
T ss_pred ceeeCHHHHHHHHHHHHHCCCCEEEEecccCccCCCCccccccCCCCCh-HH----------------------------
Confidence 46789999999999999999998876222 11 366777788888888 44
Q ss_pred CCcceeeCCCCCCceEEEEeecccCCCCCCccccccCCCcccchHhHHHHHHHHHhhhcccccCCCCCccccchhhhcCC
Q psy15126 136 GDRSCYQLPCGSKGLAIRAAVCLCGYTSHGHCAIFNEDGSIHYEKTLKRLADISKAFSDAVYVPNHNTDRFQARDVSQGA 215 (300)
Q Consensus 136 gdr~~yQ~~~~~~~~ai~~dvclc~yt~hGHcgi~~~~g~i~nd~tl~~l~~~a~~~a~~~~~~~~n~~~~~~~Da~~GA 215 (300)
|.+..++..+|++.|++||||||||+||||||++++|.|+||+||++|+++|++| +++||
T Consensus 114 --rair~iK~~~pdl~VitDvcLc~YT~HGHcGil~~~g~V~ND~Tl~~Lak~Als~------------------A~AGA 173 (342)
T 1h7n_A 114 --QGIKFIREYFPELYIICDVCLCEYTSHGHCGVLYDDGTINRERSVSRLAAVAVNY------------------AKAGA 173 (342)
T ss_dssp --HHHHHHHHHCTTSEEEEEECSTTTBTTCCSSCBCTTSSBCHHHHHHHHHHHHHHH------------------HHHTC
T ss_pred --HHHHHHHHHCCCeEEEEeeecccccCCCceeEECCCCcCccHHHHHHHHHHHHHH------------------HHcCC
Confidence 8888999999999999999999999999999998889999999999999999999 69999
Q ss_pred ceeeccCc-ch--HHHHHHHHHhh--C-CCCCEEeEec---ccccHHHHHHH------------hCCCCCHHHHHHHHHH
Q psy15126 216 DFLMVKPA-LP--YLDIISEVKSR--H-PAYPLFVYQV---SGEYAMLAFAA------------QAGALDLKRALMETLT 274 (300)
Q Consensus 216 DivmVkPs-mm--~ld~Ir~~~d~--~-~~vpi~aY~v---SgeY~~~r~Aa------------~~~~~n~~eal~E~~~ 274 (300)
||| +|| || ++.+||++|+. | .++|||||++ |++|||||+|+ |+++.|.+||++|+.+
T Consensus 174 diV--APSdMMDGrV~aIR~aLd~~G~~~~v~ImsYsaKyASafYGPFRdAa~Sap~~GDRktYQmdpaN~~EAlre~~~ 251 (342)
T 1h7n_A 174 HCV--APSDMIDGRIRDIKRGLINANLAHKTFVLSYAAKFSGNLYGPFRDAACSAPSNGDRKCYQLPPAGRGLARRALER 251 (342)
T ss_dssp SEE--EECCCCTTHHHHHHHHHHHTTCTTTCEEEEEEEEBCSSCCHHHHHHHTCCCSSSCSTTTSBCTTCHHHHHHHHHH
T ss_pred Cee--ecccccccHHHHHHHHHHHCCCccCceEeechHHHhHHhhHHHHHHHhcCCCCCCccccCCCCCCHHHHHHHHHh
Confidence 999 999 77 99999999988 8 8999999999 99999999998 5789999999999999
Q ss_pred HHHHcCCCEEEecchHHHHHHHhhC
Q psy15126 275 CLRRGGADVIISYYTPRVLEWLRED 299 (300)
Q Consensus 275 ~~~r~GAD~Ii~y~A~~~ld~l~~~ 299 (300)
|+ +||||||||||+++|||++++.
T Consensus 252 Di-~EGAD~vMVKPal~YLDIi~~v 275 (342)
T 1h7n_A 252 DM-SEGADGIIVKPSTFYLDIMRDA 275 (342)
T ss_dssp HH-HTTCSEEEEESSGGGHHHHHHH
T ss_pred hH-HhCCCeEEEecCccHHHHHHHH
Confidence 99 7999999999999999999875
No 11
>3obk_A Delta-aminolevulinic acid dehydratase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, lyase; HET: PBG; 2.50A {Toxoplasma gondii ME49}
Probab=100.00 E-value=4.6e-51 Score=387.87 Aligned_cols=189 Identities=19% Similarity=0.167 Sum_probs=170.8
Q ss_pred ecHHhHHHHHHHHHHHHHcCCCcccc--CCCCcchHHHHHHHHhhCCCCCCcccccchhhhhcccchhhhhhhcCCCCCC
Q psy15126 59 HYEKTLKRLADISKAFSDAGAHIVAP--SDMMDNRIHAIKQSLFTSRQSSTTGLLSYSAKFCSAFYGPFREAAGSAPTFG 136 (300)
Q Consensus 59 ~nd~Tl~~l~~~A~~~A~aGad~vAP--SdmMDgrv~air~aLd~~g~~~~v~ImsysaK~aS~~YGPfRda~gS~~~~g 136 (300)
..+.|++.|.+.+..+.++|+..|.. ...-.-+.....++++++|+ .+
T Consensus 67 v~r~sid~l~~~~~~~~~lGi~av~LFgv~~p~~KD~~gs~A~~~~g~-v~----------------------------- 116 (356)
T 3obk_A 67 QSRLSMEDLLKEVGEARSYGIKAFMLFPKVDDELKSVMAEESYNPDGL-LP----------------------------- 116 (356)
T ss_dssp CEEECHHHHHHHHHHHHHTTCCEEEEEEECCGGGCBSSCGGGGCTTSH-HH-----------------------------
T ss_pred ceEECHHHHHHHHHHHHHCCCCEEEEecCCCcccCCcccccccCCCCh-HH-----------------------------
Confidence 46779999999999999999998866 22235566667778888877 44
Q ss_pred CcceeeCCCCCCceEEEEeecccCCCCCCccccccC-CCcccchHhHHHHHHHHHhhhcccccCCCCCccccchhhhcCC
Q psy15126 137 DRSCYQLPCGSKGLAIRAAVCLCGYTSHGHCAIFNE-DGSIHYEKTLKRLADISKAFSDAVYVPNHNTDRFQARDVSQGA 215 (300)
Q Consensus 137 dr~~yQ~~~~~~~~ai~~dvclc~yt~hGHcgi~~~-~g~i~nd~tl~~l~~~a~~~a~~~~~~~~n~~~~~~~Da~~GA 215 (300)
|.+..++..+|++.|++||||||||+||||||+++ +|.|+||+||++|+++|++| +++||
T Consensus 117 -rAir~iK~~~P~l~VitDVcLc~YT~HGHcGil~~~~g~V~ND~Tl~~Lak~Als~------------------A~AGA 177 (356)
T 3obk_A 117 -RAIMALKEAFPDVLLLADVALDPYSSMGHDGVVDEQSGKIVNDLTVHQLCKQAITL------------------ARAGA 177 (356)
T ss_dssp -HHHHHHHHHSTTCEEEEEECSGGGBTTCCSSCBCTTTCCBCHHHHHHHHHHHHHHH------------------HHHTC
T ss_pred -HHHHHHHHHCCCCEEEEeeccccccCCCcceeeeCCCCCCCCHHHHHHHHHHHHHH------------------HHcCC
Confidence 78888898999999999999999999999999987 59999999999999999999 69999
Q ss_pred ceeeccCc-ch--HHHHHHHHHhh--CCCCCEEeEec---ccccHHHHHHH-------------hCCCCCHHHHHHHHHH
Q psy15126 216 DFLMVKPA-LP--YLDIISEVKSR--HPAYPLFVYQV---SGEYAMLAFAA-------------QAGALDLKRALMETLT 274 (300)
Q Consensus 216 DivmVkPs-mm--~ld~Ir~~~d~--~~~vpi~aY~v---SgeY~~~r~Aa-------------~~~~~n~~eal~E~~~ 274 (300)
||| +|| || ++.+||++||. |.++|||||++ |++|||||+|+ |+++.|.+||++|+.+
T Consensus 178 DiV--APSdMMDGrV~aIR~aLd~~G~~~v~IMsYsaKyASafYGPFRdAa~Sa~p~~GDRktYQmdpaN~~EAlrE~~l 255 (356)
T 3obk_A 178 DMV--CPSDMMDGRVSAIRESLDMEGCTDTSILAYSCKYASSFYGPFRDALDSHMVGGTDKKTYQMDPSNSREAEREAEA 255 (356)
T ss_dssp SEE--EECSCCTTHHHHHHHHHHHTTCTTSEEEEEEEEBCCSTTHHHHHHHTCCCSTTCCSTTTSBCTTCSHHHHHHHHH
T ss_pred CeE--eccccccCHHHHHHHHHHHCCCCCcceehhHHHHhhhccchhhHHhcCCCCCCCCccccCCCCCCHHHHHHHHHh
Confidence 999 999 77 99999999997 89999999999 99999999998 5689999999999999
Q ss_pred HHHHcCCCEEEecchHHHHHHHhhC
Q psy15126 275 CLRRGGADVIISYYTPRVLEWLRED 299 (300)
Q Consensus 275 ~~~r~GAD~Ii~y~A~~~ld~l~~~ 299 (300)
|+ +||||||||||+++|||++++.
T Consensus 256 Di-~EGAD~vMVKPal~YLDIi~~v 279 (356)
T 3obk_A 256 DA-SEGADMLMVKPGLPYLDVLAKI 279 (356)
T ss_dssp HH-HTTCSEEEEESSGGGHHHHHHH
T ss_pred hH-hcCCCEEEecCCCcHHHHHHHH
Confidence 99 7999999999999999999875
No 12
>1l6s_A Porphobilinogen synthase; dehydratase, lyase; HET: CME DSB; 1.70A {Escherichia coli} SCOP: c.1.10.3 PDB: 1i8j_A* 1l6y_A* 1b4e_A
Probab=100.00 E-value=2.8e-51 Score=385.76 Aligned_cols=188 Identities=21% Similarity=0.293 Sum_probs=170.5
Q ss_pred ecHHhHHHHHHHHHHHHHcCCCccccCCCCcchHHHHHHHHhhCCCCCCcccccchhhhhcccchhhhhhhcCCCCCCCc
Q psy15126 59 HYEKTLKRLADISKAFSDAGAHIVAPSDMMDNRIHAIKQSLFTSRQSSTTGLLSYSAKFCSAFYGPFREAAGSAPTFGDR 138 (300)
Q Consensus 59 ~nd~Tl~~l~~~A~~~A~aGad~vAPSdmMDgrv~air~aLd~~g~~~~v~ImsysaK~aS~~YGPfRda~gS~~~~gdr 138 (300)
..+.|++.|.+.+..+.++|+..|..=..-+.+.....++++++|+ .+ |
T Consensus 52 v~r~sid~l~~~~~~~~~lGi~~v~LFgvp~~Kd~~gs~A~~~~g~-v~------------------------------r 100 (323)
T 1l6s_A 52 VMRIPEKHLAREIERIANAGIRSVMTFGISHHTDETGSDAWREDGL-VA------------------------------R 100 (323)
T ss_dssp CEEEEGGGHHHHHHHHHHHTCCEEEEEEECSSCBSSCGGGGSTTSH-HH------------------------------H
T ss_pred ceeeCHHHHHHHHHHHHHCCCCEEEEeCCCCCCCccccccCCCCCc-HH------------------------------H
Confidence 4677899999999999999999887622224466777788888888 44 8
Q ss_pred ceeeCCCCCCceEEEEeecccCCCCCCccccccCCCcccchHhHHHHHHHHHhhhcccccCCCCCccccchhhhcCCcee
Q psy15126 139 SCYQLPCGSKGLAIRAAVCLCGYTSHGHCAIFNEDGSIHYEKTLKRLADISKAFSDAVYVPNHNTDRFQARDVSQGADFL 218 (300)
Q Consensus 139 ~~yQ~~~~~~~~ai~~dvclc~yt~hGHcgi~~~~g~i~nd~tl~~l~~~a~~~a~~~~~~~~n~~~~~~~Da~~GADiv 218 (300)
.+..++..+|++.|++||||||||+||||||++ +|.|+||+||++|+++|++| +++|||||
T Consensus 101 air~iK~~~pdl~vitDvcLc~YT~HGHcGil~-~g~V~ND~Tl~~Lak~Als~------------------A~AGAdiV 161 (323)
T 1l6s_A 101 MSRICKQTVPEMIVMSDTCFCEYTSHGHCGVLC-EHGVDNDATLENLGKQAVVA------------------AAAGADFI 161 (323)
T ss_dssp HHHHHHHHCTTSEEEEEECSTTTBSSCCSSCBC-SSSBCHHHHHHHHHHHHHHH------------------HHHTCSEE
T ss_pred HHHHHHHHCCCeEEEEeeeccccCCCCceEecc-CCcCccHHHHHHHHHHHHHH------------------HHcCCCeE
Confidence 888999999999999999999999999999995 79999999999999999999 69999999
Q ss_pred eccCc-ch--HHHHHHHHHhh--CCCCCEEeEec---ccccHHHHHHH-----------hCCCCCHHHHHHHHHHHHHHc
Q psy15126 219 MVKPA-LP--YLDIISEVKSR--HPAYPLFVYQV---SGEYAMLAFAA-----------QAGALDLKRALMETLTCLRRG 279 (300)
Q Consensus 219 mVkPs-mm--~ld~Ir~~~d~--~~~vpi~aY~v---SgeY~~~r~Aa-----------~~~~~n~~eal~E~~~~~~r~ 279 (300)
+|| || ++.+||++|+. |.++|||||++ |++|||||+|+ |+++.|.+||++|+.+|+ +|
T Consensus 162 --APSdMMDGrV~aIR~aLd~~G~~~v~ImsYsaKyASafYGPFRdAa~Sap~GDRktYQmdpaN~~EAlre~~~Di-~E 238 (323)
T 1l6s_A 162 --APSAAMDGQVQAIRQALDAAGFKDTAIMSYSTKFASSFYGPFREAAGSALKGDRKSYQMNPMNRREAIRESLLDE-AQ 238 (323)
T ss_dssp --EECSCCTTHHHHHHHHHHHTTCTTCEEBCCCEEBCCSCCHHHHHHHTCCCSSCCTTTSBCTTCHHHHHHHHHHHH-HT
T ss_pred --ecccccccHHHHHHHHHHhCCCCCceeeehhHHHhHHhhHHHHHHhcCCCCCCccccCCCCCCHHHHHHHHHhhH-Hh
Confidence 999 77 99999999988 88999999999 99999999998 578999999999999999 79
Q ss_pred CCCEEEecchHHHHHHHhhC
Q psy15126 280 GADVIISYYTPRVLEWLRED 299 (300)
Q Consensus 280 GAD~Ii~y~A~~~ld~l~~~ 299 (300)
|||||||||+++|||++++.
T Consensus 239 GAD~vMVKPal~YLDIi~~v 258 (323)
T 1l6s_A 239 GADCLMVKPAGAYLDIVREL 258 (323)
T ss_dssp TCSBEEEESCTTCHHHHHHH
T ss_pred CCceEEEecCcchhHHHHHH
Confidence 99999999999999999875
No 13
>1zlp_A PSR132, petal death protein; TIM-barrel, helix swapping,2-ethyl-3-methylmalate lyase, 2-P methylmalate lyase, lyase/PEP mutase superfamily; 2.70A {Dianthus caryophyllus}
Probab=95.67 E-value=0.22 Score=46.89 Aligned_cols=160 Identities=19% Similarity=0.189 Sum_probs=98.7
Q ss_pred HHHHHHHHHHhCCCcEEEeeecCCCCCCCCcceeeCCCCceecHHhHHHHHHHHHHHHHcCCCccccCCCC---------
Q psy15126 18 LFQVIPMIRKQFPSLTIACDVCLCGYTSHGHCAIFNEDGSIHYEKTLKRLADISKAFSDAGAHIVAPSDMM--------- 88 (300)
Q Consensus 18 ~~~~i~~ik~~~p~l~i~~Dvclc~yt~hGHcgi~~~~g~i~nd~Tl~~l~~~A~~~A~aGad~vAPSdmM--------- 88 (300)
+...++.|.+..|++-|++|.= .|. - +.....+.+..+.++|+..|-.-|-.
T Consensus 88 m~~~~~~I~r~~~~~PviaD~d---------------~Gy-g---~~~~v~~tv~~l~~aGaagv~iED~~~~k~cgH~~ 148 (318)
T 1zlp_A 88 VVEATRRITAAAPNLCVVVDGD---------------TGG-G---GPLNVQRFIRELISAGAKGVFLEDQVWPKKCGHMR 148 (318)
T ss_dssp HHHHHHHHHHHSSSSEEEEECT---------------TCS-S---SHHHHHHHHHHHHHTTCCEEEEECBCSSCCCSSSS
T ss_pred HHHHHHHHHhhccCCCEEEeCC---------------CCC-C---CHHHHHHHHHHHHHcCCcEEEECCCCCCccccCCC
Confidence 4556788888888999999962 341 1 34556677777788999988775432
Q ss_pred ----------cchHHHHHHHHhhCCCCCCcccccchhhhhcccchhhhhhhcCCCCCCCcceeeCCCCCCceEEEEeecc
Q psy15126 89 ----------DNRIHAIKQSLFTSRQSSTTGLLSYSAKFCSAFYGPFREAAGSAPTFGDRSCYQLPCGSKGLAIRAAVCL 158 (300)
Q Consensus 89 ----------Dgrv~air~aLd~~g~~~~v~ImsysaK~aS~~YGPfRda~gS~~~~gdr~~yQ~~~~~~~~ai~~dvcl 158 (300)
-.||.+++++.+.-+| -|+ -|+|
T Consensus 149 gk~L~p~~e~~~rI~Aa~~A~~~~~~----~I~----------------------------------------ARtd--- 181 (318)
T 1zlp_A 149 GKAVVPAEEHALKIAAAREAIGDSDF----FLV----------------------------------------ARTD--- 181 (318)
T ss_dssp CCCBCCHHHHHHHHHHHHHHHTTSCC----EEE----------------------------------------EEEC---
T ss_pred CCccCCHHHHHHHHHHHHHhcccCCc----EEE----------------------------------------EeeH---
Confidence 2255555555543333 111 1333
Q ss_pred cCCCCCCccccccCCCcccchHhHHHHHHHHHhhhcccccCCCCCccccchhhhcCCceeeccCcchHHHHHHHHHhhCC
Q psy15126 159 CGYTSHGHCAIFNEDGSIHYEKTLKRLADISKAFSDAVYVPNHNTDRFQARDVSQGADFLMVKPALPYLDIISEVKSRHP 238 (300)
Q Consensus 159 c~yt~hGHcgi~~~~g~i~nd~tl~~l~~~a~~~a~~~~~~~~n~~~~~~~Da~~GADivmVkPsmm~ld~Ir~~~d~~~ 238 (300)
-. -..-++.+.+-++++ .++|||+|++ |+.+-.+.++++-+..
T Consensus 182 ---------------a~--a~~gl~~ai~Ra~Ay------------------~eAGAd~i~~-e~~~~~e~~~~i~~~l- 224 (318)
T 1zlp_A 182 ---------------AR--APHGLEEGIRRANLY------------------KEAGADATFV-EAPANVDELKEVSAKT- 224 (318)
T ss_dssp ---------------TH--HHHHHHHHHHHHHHH------------------HHTTCSEEEE-CCCCSHHHHHHHHHHS-
T ss_pred ---------------Hh--hhcCHHHHHHHHHHH------------------HHcCCCEEEE-cCCCCHHHHHHHHHhc-
Confidence 00 012356667777887 7999999954 5667788999999887
Q ss_pred CCCEEeEeccc---ccHHHHHHHhCCCC----------CHHHHHHHHHHHHHHcC
Q psy15126 239 AYPLFVYQVSG---EYAMLAFAAQAGAL----------DLKRALMETLTCLRRGG 280 (300)
Q Consensus 239 ~vpi~aY~vSg---eY~~~r~Aa~~~~~----------n~~eal~E~~~~~~r~G 280 (300)
++|+++--+.+ ..-..+.-.++|+. -.-.++++.+..+++.|
T Consensus 225 ~~P~lan~~~~g~~~~~~~~eL~~lGv~~v~~~~~~~raa~~a~~~~~~~l~~~g 279 (318)
T 1zlp_A 225 KGLRIANMIEGGKTPLHTPEEFKEMGFHLIAHSLTAVYATARALVNIMKILKEKG 279 (318)
T ss_dssp CSEEEEEECTTSSSCCCCHHHHHHHTCCEEEECSHHHHHHHHHHHHHHHHHHHHS
T ss_pred CCCEEEEeccCCCCCCCCHHHHHHcCCeEEEEchHHHHHHHHHHHHHHHHHHHcC
Confidence 59998843321 11124444454421 22456777788887666
No 14
>2qiw_A PEP phosphonomutase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: P6G; 1.80A {Corynebacterium glutamicum atcc 13032}
Probab=95.38 E-value=0.075 Score=48.30 Aligned_cols=81 Identities=17% Similarity=0.104 Sum_probs=51.1
Q ss_pred HhHHHHHHHHHhhhcccccCCCCCccccchhhhcCCceeeccCcchHHHHHHHHHhhCCCCCEEeEeccccc---HHHHH
Q psy15126 180 KTLKRLADISKAFSDAVYVPNHNTDRFQARDVSQGADFLMVKPALPYLDIISEVKSRHPAYPLFVYQVSGEY---AMLAF 256 (300)
Q Consensus 180 ~tl~~l~~~a~~~a~~~~~~~~n~~~~~~~Da~~GADivmVkPsmm~ld~Ir~~~d~~~~vpi~aY~vSgeY---~~~r~ 256 (300)
+.++.+.+-+.++ .++|||+|++ |+.+-.+.++++-++. ++|+..-...+.+ -.+..
T Consensus 165 ~~~~~ai~ra~a~------------------~eAGAd~i~~-e~~~~~~~~~~i~~~~-~~P~n~~~~~~~~~p~~~~~e 224 (255)
T 2qiw_A 165 DPMVEAIKRIKLM------------------EQAGARSVYP-VGLSTAEQVERLVDAV-SVPVNITAHPVDGHGAGDLAT 224 (255)
T ss_dssp SHHHHHHHHHHHH------------------HHHTCSEEEE-CCCCSHHHHHHHHTTC-SSCBEEECBTTTBBTTBCHHH
T ss_pred HHHHHHHHHHHHH------------------HHcCCcEEEE-cCCCCHHHHHHHHHhC-CCCEEEEecCCCCCCCCCHHH
Confidence 3467777778887 7999999965 7777788999999887 5888543222211 12333
Q ss_pred HHhCC-------CCCHHHHHHHHHHHHHHcCC
Q psy15126 257 AAQAG-------ALDLKRALMETLTCLRRGGA 281 (300)
Q Consensus 257 Aa~~~-------~~n~~eal~E~~~~~~r~GA 281 (300)
-.++| .. .-.++.+++..+++.||
T Consensus 225 L~~lGv~~v~~~~~-a~~a~~~~~~~i~~~g~ 255 (255)
T 2qiw_A 225 LAGLGVRRVTFGPL-WQKWLAATSAQQLKGWA 255 (255)
T ss_dssp HHHTTCCEEECTTH-HHHHHHHHHHHHHGGGC
T ss_pred HHHcCCCEEEEHHH-HHHHHHHHHHHHHhcCC
Confidence 34443 21 34566666666655554
No 15
>3f4w_A Putative hexulose 6 phosphate synthase; humps, malonate, lyase; 1.65A {Salmonella typhimurium} SCOP: c.1.2.0
Probab=94.46 E-value=0.092 Score=44.05 Aligned_cols=63 Identities=22% Similarity=0.294 Sum_probs=41.5
Q ss_pred HHHHHHHHHhCCCcEEEeeecCCCCCCCCcceeeCCCCceecHHhHHHHHHHHHHHHHcCCCccccCCCCc-chHHHHHH
Q psy15126 19 FQVIPMIRKQFPSLTIACDVCLCGYTSHGHCAIFNEDGSIHYEKTLKRLADISKAFSDAGAHIVAPSDMMD-NRIHAIKQ 97 (300)
Q Consensus 19 ~~~i~~ik~~~p~l~i~~Dvclc~yt~hGHcgi~~~~g~i~nd~Tl~~l~~~A~~~A~aGad~vAPSdmMD-grv~air~ 97 (300)
.+.|+.||+.+|++-|.+|.-+ .++ .. ..+..++++|+|.|...+... ..+....+
T Consensus 41 ~~~i~~ir~~~~~~~i~~~~~~-------------~~~----~~------~~~~~~~~~Gad~v~v~~~~~~~~~~~~~~ 97 (211)
T 3f4w_A 41 VNAIKAIKEKYPHKEVLADAKI-------------MDG----GH------FESQLLFDAGADYVTVLGVTDVLTIQSCIR 97 (211)
T ss_dssp THHHHHHHHHCTTSEEEEEEEE-------------CSC----HH------HHHHHHHHTTCSEEEEETTSCHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCEEEEEEEe-------------ccc----hH------HHHHHHHhcCCCEEEEeCCCChhHHHHHHH
Confidence 3679999999999888555333 112 11 125667889999987755443 45567777
Q ss_pred HHhhCCC
Q psy15126 98 SLFTSRQ 104 (300)
Q Consensus 98 aLd~~g~ 104 (300)
.+.+.|.
T Consensus 98 ~~~~~g~ 104 (211)
T 3f4w_A 98 AAKEAGK 104 (211)
T ss_dssp HHHHHTC
T ss_pred HHHHcCC
Confidence 7777676
No 16
>2ze3_A DFA0005; organic waste LEFT-OVER decomposition, alkaliphilic, ICL/PEPM superfamily, alpha-ketoglutarate LIG isomerase; HET: AKG; 1.65A {Deinococcus ficus}
Probab=93.99 E-value=1 Score=41.26 Aligned_cols=168 Identities=18% Similarity=0.156 Sum_probs=101.6
Q ss_pred HHHHHHHHHHhCCCcEEEeeecCCCCCCCCcceeeCCCCceecHHhHHHHHHHHHHHHHcCCCccccCCC----------
Q psy15126 18 LFQVIPMIRKQFPSLTIACDVCLCGYTSHGHCAIFNEDGSIHYEKTLKRLADISKAFSDAGAHIVAPSDM---------- 87 (300)
Q Consensus 18 ~~~~i~~ik~~~p~l~i~~Dvclc~yt~hGHcgi~~~~g~i~nd~Tl~~l~~~A~~~A~aGad~vAPSdm---------- 87 (300)
+...++.|.+..+ +-|++|.= .|. -.+.+...+.+..+.++|+..|-.-|-
T Consensus 64 m~~~~~~I~~~~~-~pviaD~d---------------~Gy---g~~~~~~~~~v~~l~~aGaagv~iED~~~~~~k~l~~ 124 (275)
T 2ze3_A 64 MGREVEAIVRAVA-IPVNADIE---------------AGY---GHAPEDVRRTVEHFAALGVAGVNLEDATGLTPTELYD 124 (275)
T ss_dssp HHHHHHHHHHHCS-SCEEEECT---------------TCS---SSSHHHHHHHHHHHHHTTCSEEEEECBCSSSSSCBCC
T ss_pred HHHHHHHHHhhcC-CCEEeecC---------------CCC---CCCHHHHHHHHHHHHHcCCcEEEECCCcCCCCCccCC
Confidence 3445666666665 56777752 231 114555667777788899999888554
Q ss_pred ---CcchHHHHHHHHhhCCCCCCcccccchhhhhcccchhhhhhhcCCCCCCCcceeeCCCCCCceEEEEeecccCCCCC
Q psy15126 88 ---MDNRIHAIKQSLFTSRQSSTTGLLSYSAKFCSAFYGPFREAAGSAPTFGDRSCYQLPCGSKGLAIRAAVCLCGYTSH 164 (300)
Q Consensus 88 ---MDgrv~air~aLd~~g~~~~v~ImsysaK~aS~~YGPfRda~gS~~~~gdr~~yQ~~~~~~~~ai~~dvclc~yt~h 164 (300)
|-.||.+++++.+..|. +.-|+ -|+|.-+ .
T Consensus 125 ~~e~~~~I~aa~~a~~~~g~--~~~i~----------------------------------------aRtda~~-----~ 157 (275)
T 2ze3_A 125 LDSQLRRIEAARAAIDASGV--PVFLN----------------------------------------ARTDTFL-----K 157 (275)
T ss_dssp HHHHHHHHHHHHHHHHHHTS--CCEEE----------------------------------------EECCTTT-----T
T ss_pred HHHHHHHHHHHHHhHhhcCC--CeEEE----------------------------------------Eechhhh-----c
Confidence 45778888887776665 11121 1232000 0
Q ss_pred CccccccCCCcccchHhHHHHHHHHHhhhcccccCCCCCccccchhhhcCCceeeccCcchHHHHHHHHHhhCCCCCEEe
Q psy15126 165 GHCAIFNEDGSIHYEKTLKRLADISKAFSDAVYVPNHNTDRFQARDVSQGADFLMVKPALPYLDIISEVKSRHPAYPLFV 244 (300)
Q Consensus 165 GHcgi~~~~g~i~nd~tl~~l~~~a~~~a~~~~~~~~n~~~~~~~Da~~GADivmVkPsmm~ld~Ir~~~d~~~~vpi~a 244 (300)
| .|.= .+..++.+.+-++++ .++|||+|+ -|+.+-.+.++++.++. ++|+.
T Consensus 158 ~-------~g~~-~~~~~~~ai~Ra~ay------------------~eAGAd~i~-~e~~~~~~~~~~i~~~~-~~P~n- 208 (275)
T 2ze3_A 158 G-------HGAT-DEERLAETVRRGQAY------------------ADAGADGIF-VPLALQSQDIRALADAL-RVPLN- 208 (275)
T ss_dssp T-------CSSS-HHHHHHHHHHHHHHH------------------HHTTCSEEE-CTTCCCHHHHHHHHHHC-SSCEE-
T ss_pred c-------cccc-chhhHHHHHHHHHHH------------------HHCCCCEEE-ECCCCCHHHHHHHHHhc-CCCEE-
Confidence 0 0000 013466777778887 799999994 46666788899998887 58984
Q ss_pred EecccccHHHHHHHhCCCC----------CHHHHHHHHHHHHHHcC
Q psy15126 245 YQVSGEYAMLAFAAQAGAL----------DLKRALMETLTCLRRGG 280 (300)
Q Consensus 245 Y~vSgeY~~~r~Aa~~~~~----------n~~eal~E~~~~~~r~G 280 (300)
+..+...-.++.-.++|+. -.-.++.+.+..+++.|
T Consensus 209 ~~~~~~~~~~~eL~~lGv~~v~~~~~~~raa~~a~~~~~~~i~~~g 254 (275)
T 2ze3_A 209 VMAFPGSPVPRALLDAGAARVSFGQSLMLATLGLVQRMAAELHAAE 254 (275)
T ss_dssp EECCTTSCCHHHHHHTTCSEEECTTHHHHHHHHHHHHHHHHHHHHS
T ss_pred EecCCCCCCHHHHHHcCCcEEEEChHHHHHHHHHHHHHHHHHHHhC
Confidence 4333333345555666521 23457788888887777
No 17
>3fa4_A 2,3-dimethylmalate lyase; alpha/beta barrel, helix swapping; 2.18A {Aspergillus niger} PDB: 3fa3_A
Probab=93.98 E-value=1 Score=42.20 Aligned_cols=70 Identities=23% Similarity=0.308 Sum_probs=45.8
Q ss_pred hhcCCceeeccCcchHHHHHHHHHhhCCCCCEEeEec-ccccH--HHHHHHhCC-------CCC---HHHHHHHHHHHHH
Q psy15126 211 VSQGADFLMVKPALPYLDIISEVKSRHPAYPLFVYQV-SGEYA--MLAFAAQAG-------ALD---LKRALMETLTCLR 277 (300)
Q Consensus 211 a~~GADivmVkPsmm~ld~Ir~~~d~~~~vpi~aY~v-SgeY~--~~r~Aa~~~-------~~n---~~eal~E~~~~~~ 277 (300)
+++|||+|+| |++.-.+-|+++.+.++.+|+++=.+ .|.+. ....-.+.| ..- .-.++++++..|+
T Consensus 180 ~eAGAD~ifi-~g~~~~~ei~~~~~~~~~~Pl~~n~~~~g~~p~~~~~eL~~lGv~~v~~~~~~~raa~~A~~~~~~~i~ 258 (302)
T 3fa4_A 180 RDAGADVGFL-EGITSREMARQVIQDLAGWPLLLNMVEHGATPSISAAEAKEMGFRIIIFPFAALGPAVAAMREAMEKLK 258 (302)
T ss_dssp HTTTCSEEEE-TTCCCHHHHHHHHHHTTTSCEEEECCTTSSSCCCCHHHHHHHTCSEEEETTTTHHHHHHHHHHHHHHHH
T ss_pred HHcCCCEEee-cCCCCHHHHHHHHHHhcCCceeEEEecCCCCCCCCHHHHHHcCCCEEEEchHHHHHHHHHHHHHHHHHH
Confidence 7999999976 66656788888888876689876433 23332 233444443 112 2467888888887
Q ss_pred HcCC
Q psy15126 278 RGGA 281 (300)
Q Consensus 278 r~GA 281 (300)
+.|-
T Consensus 259 ~~g~ 262 (302)
T 3fa4_A 259 RDGI 262 (302)
T ss_dssp HHSS
T ss_pred HcCC
Confidence 7764
No 18
>4e38_A Keto-hydroxyglutarate-aldolase/keto-deoxy-phospho aldolase; lyase; 1.64A {Vibrionales bacterium swat-3}
Probab=93.84 E-value=0.068 Score=48.20 Aligned_cols=35 Identities=14% Similarity=0.117 Sum_probs=29.3
Q ss_pred hhcCCceeeccCcch--HHHHHHHHHhhCCCCCEEeE
Q psy15126 211 VSQGADFLMVKPALP--YLDIISEVKSRHPAYPLFVY 245 (300)
Q Consensus 211 a~~GADivmVkPsmm--~ld~Ir~~~d~~~~vpi~aY 245 (300)
.+.|||+|-+=|+-. =++.|++++.-+|++|+++=
T Consensus 144 ~~~Gad~vK~FPa~~~gG~~~lkal~~p~p~ip~~pt 180 (232)
T 4e38_A 144 LEMGLTTLKFFPAEASGGISMVKSLVGPYGDIRLMPT 180 (232)
T ss_dssp HHTTCCEEEECSTTTTTHHHHHHHHHTTCTTCEEEEB
T ss_pred HHcCCCEEEECcCccccCHHHHHHHHHHhcCCCeeeE
Confidence 689999999999743 37888888888899999974
No 19
>3lye_A Oxaloacetate acetyl hydrolase; (alpha/beta)8 barrel; 1.30A {Cryphonectria parasitica} PDB: 3m0j_A* 3m0k_A
Probab=93.44 E-value=1.3 Score=41.55 Aligned_cols=70 Identities=23% Similarity=0.287 Sum_probs=44.3
Q ss_pred hhcCCceeeccCcchHHHHHHHHHhhCCCCCEEeEec-ccccH--HHHHHHhCCC-------C---CHHHHHHHHHHHHH
Q psy15126 211 VSQGADFLMVKPALPYLDIISEVKSRHPAYPLFVYQV-SGEYA--MLAFAAQAGA-------L---DLKRALMETLTCLR 277 (300)
Q Consensus 211 a~~GADivmVkPsmm~ld~Ir~~~d~~~~vpi~aY~v-SgeY~--~~r~Aa~~~~-------~---n~~eal~E~~~~~~ 277 (300)
+++|||+|++ |+..-.+.|+++.+.++.+|++.=.+ .|.+. +...-.+.|+ . -.-.++++++..++
T Consensus 188 ~eAGAD~ifi-~~~~~~~~~~~i~~~~~~~Pv~~n~~~~g~~p~~t~~eL~~lGv~~v~~~~~~~raa~~a~~~~~~~l~ 266 (307)
T 3lye_A 188 RDEGADVGLL-EGFRSKEQAAAAVAALAPWPLLLNSVENGHSPLITVEEAKAMGFRIMIFSFATLAPAYAAIRETLVRLR 266 (307)
T ss_dssp HHTTCSEEEE-CCCSCHHHHHHHHHHHTTSCBEEEEETTSSSCCCCHHHHHHHTCSEEEEETTTHHHHHHHHHHHHHHHH
T ss_pred HHCCCCEEEe-cCCCCHHHHHHHHHHccCCceeEEeecCCCCCCCCHHHHHHcCCeEEEEChHHHHHHHHHHHHHHHHHH
Confidence 7999999976 57666778888887765688865323 23322 2334444441 1 13467788888887
Q ss_pred HcCC
Q psy15126 278 RGGA 281 (300)
Q Consensus 278 r~GA 281 (300)
+.|-
T Consensus 267 ~~g~ 270 (307)
T 3lye_A 267 DHGV 270 (307)
T ss_dssp HHSC
T ss_pred HhCC
Confidence 7664
No 20
>3lab_A Putative KDPG (2-keto-3-deoxy-6-phosphogluconate) aldolase; unknown function, aldolase superfamily, class I aldolase, KDPG aldolase domain; 1.84A {Oleispira antarctica} PDB: 3vcr_A
Probab=93.18 E-value=0.16 Score=45.62 Aligned_cols=35 Identities=14% Similarity=0.122 Sum_probs=29.0
Q ss_pred hhcCCceeeccCcch--HHHHHHHHHhhCCCCCEEeE
Q psy15126 211 VSQGADFLMVKPALP--YLDIISEVKSRHPAYPLFVY 245 (300)
Q Consensus 211 a~~GADivmVkPsmm--~ld~Ir~~~d~~~~vpi~aY 245 (300)
.++|+|+|-+-|+-. =.+.|+.++.-+|++|+++=
T Consensus 129 ~~~Gad~vK~FPa~~~gG~~~lkal~~p~p~i~~~pt 165 (217)
T 3lab_A 129 AQAGITQLKCFPASAIGGAKLLKAWSGPFPDIQFCPT 165 (217)
T ss_dssp HHTTCCEEEETTTTTTTHHHHHHHHHTTCTTCEEEEB
T ss_pred HHcCCCEEEECccccccCHHHHHHHHhhhcCceEEEe
Confidence 689999998889743 27888888888999999964
No 21
>3dz1_A Dihydrodipicolinate synthase; lysine biosynthesis, pyruvate, TIM barrel, NYSGXRC, PSI2, structural genomics; 1.87A {Rhodopseudomonas palustris} SCOP: c.1.10.0
Probab=92.56 E-value=0.8 Score=42.01 Aligned_cols=82 Identities=16% Similarity=0.107 Sum_probs=55.1
Q ss_pred ccCCCcccchHhHHHHHHHHHhhhcccccCCCCCccccchhhhcCCceeeccCc------ch---HHHHHHHHHhhCCCC
Q psy15126 170 FNEDGSIHYEKTLKRLADISKAFSDAVYVPNHNTDRFQARDVSQGADFLMVKPA------LP---YLDIISEVKSRHPAY 240 (300)
Q Consensus 170 ~~~~g~i~nd~tl~~l~~~a~~~a~~~~~~~~n~~~~~~~Da~~GADivmVkPs------mm---~ld~Ir~~~d~~~~v 240 (300)
|++||+|+.+..-+.+-.. ++.|+|-|.|.=+ +. +..+++.+.+.-..+
T Consensus 20 f~~dg~iD~~~l~~lv~~l----------------------i~~Gv~Gl~v~GtTGE~~~Lt~~Er~~v~~~~v~~~grv 77 (313)
T 3dz1_A 20 FHDDGKIDDVSIDRLTDFY----------------------AEVGCEGVTVLGILGEAPKLDAAEAEAVATRFIKRAKSM 77 (313)
T ss_dssp BCTTSCBCHHHHHHHHHHH----------------------HHTTCSEEEESTGGGTGGGSCHHHHHHHHHHHHHHCTTS
T ss_pred CCCCCCcCHHHHHHHHHHH----------------------HHCCCCEEEeCccCcChhhCCHHHHHHHHHHHHHHcCCC
Confidence 4667888877664443333 7899998877533 22 788888887764579
Q ss_pred CEEeEecccccHHHHHHHhCCCCCHHHHHHHHHHHHHHcCCCEEEecc
Q psy15126 241 PLFVYQVSGEYAMLAFAAQAGALDLKRALMETLTCLRRGGADVIISYY 288 (300)
Q Consensus 241 pi~aY~vSgeY~~~r~Aa~~~~~n~~eal~E~~~~~~r~GAD~Ii~y~ 288 (300)
||++ ++ |-.+.++++..+-... +.|||.+++-|
T Consensus 78 pVia-Gv-------------g~~~t~~ai~la~~A~-~~Gadavlv~~ 110 (313)
T 3dz1_A 78 QVIV-GV-------------SAPGFAAMRRLARLSM-DAGAAGVMIAP 110 (313)
T ss_dssp EEEE-EC-------------CCSSHHHHHHHHHHHH-HHTCSEEEECC
T ss_pred cEEE-ec-------------CCCCHHHHHHHHHHHH-HcCCCEEEECC
Confidence 9998 44 2346677765544444 78999988853
No 22
>1vhc_A Putative KHG/KDPG aldolase; structural genomics, unknown function; HET: MSE; 1.89A {Haemophilus influenzae} SCOP: c.1.10.1
Probab=92.48 E-value=1.1 Score=39.65 Aligned_cols=35 Identities=11% Similarity=0.118 Sum_probs=28.3
Q ss_pred hhcCCceeeccCcch--HHHHHHHHHhhCCCCCEEeE
Q psy15126 211 VSQGADFLMVKPALP--YLDIISEVKSRHPAYPLFVY 245 (300)
Q Consensus 211 a~~GADivmVkPsmm--~ld~Ir~~~d~~~~vpi~aY 245 (300)
.+.|||+|.+=|+-. =++.+++++..+|++|+++=
T Consensus 127 ~~~Gad~vk~Fpa~~~gG~~~lk~l~~~~~~ipvvai 163 (224)
T 1vhc_A 127 LEMGISAVKFFPAEASGGVKMIKALLGPYAQLQIMPT 163 (224)
T ss_dssp HHTTCCEEEETTTTTTTHHHHHHHHHTTTTTCEEEEB
T ss_pred HHCCCCEEEEeeCccccCHHHHHHHHhhCCCCeEEEE
Confidence 578999999999633 37888888888888999765
No 23
>3nav_A Tryptophan synthase alpha chain; alpha subunit, structural genomics, CSG center for structural genomics of infectious diseases; 2.10A {Vibrio cholerae o1 biovar el tor} SCOP: c.1.2.4
Probab=92.39 E-value=0.12 Score=47.38 Aligned_cols=19 Identities=26% Similarity=0.957 Sum_probs=15.2
Q ss_pred HHHHHHHHhhCCCCCE--EeE
Q psy15126 227 LDIISEVKSRHPAYPL--FVY 245 (300)
Q Consensus 227 ld~Ir~~~d~~~~vpi--~aY 245 (300)
++.+++++++++++|| |.|
T Consensus 85 ~~~v~~~r~~~~~~Pivlm~Y 105 (271)
T 3nav_A 85 FELIAQIRARNPETPIGLLMY 105 (271)
T ss_dssp HHHHHHHHHHCTTSCEEEEEC
T ss_pred HHHHHHHHhcCCCCCEEEEec
Confidence 5788898887778998 556
No 24
>3eb2_A Putative dihydrodipicolinate synthetase; lysine biosynthesis, pyruvate, TIM barrel, NYSGXRC, PSI2., structural genomics; HET: PGE; 2.04A {Rhodopseudomonas palustris} SCOP: c.1.10.0
Probab=92.38 E-value=0.58 Score=42.68 Aligned_cols=81 Identities=15% Similarity=0.212 Sum_probs=54.0
Q ss_pred ccCCCcccchHhHHHHHHHHHhhhcccccCCCCCccccchhhhcCCceeeccCc------ch---HHHHHHHHHhh-CCC
Q psy15126 170 FNEDGSIHYEKTLKRLADISKAFSDAVYVPNHNTDRFQARDVSQGADFLMVKPA------LP---YLDIISEVKSR-HPA 239 (300)
Q Consensus 170 ~~~~g~i~nd~tl~~l~~~a~~~a~~~~~~~~n~~~~~~~Da~~GADivmVkPs------mm---~ld~Ir~~~d~-~~~ 239 (300)
|++||+|+.+..-+.+... ++.|+|-|.|.=+ +. +..+++.+.+. -..
T Consensus 16 f~~dg~iD~~~l~~lv~~l----------------------i~~Gv~gl~v~GttGE~~~Ls~~Er~~v~~~~~~~~~gr 73 (300)
T 3eb2_A 16 VDAEGRVRADVMGRLCDDL----------------------IQAGVHGLTPLGSTGEFAYLGTAQREAVVRATIEAAQRR 73 (300)
T ss_dssp BCTTSCBCHHHHHHHHHHH----------------------HHTTCSCBBTTSGGGTGGGCCHHHHHHHHHHHHHHHTTS
T ss_pred CCCCCCcCHHHHHHHHHHH----------------------HHcCCCEEEECccccCccccCHHHHHHHHHHHHHHhCCC
Confidence 4677888877764444333 7899999876533 22 78888888876 447
Q ss_pred CCEEeEecccccHHHHHHHhCCCCCHHHHHHHHHHHHHHcCCCEEEec
Q psy15126 240 YPLFVYQVSGEYAMLAFAAQAGALDLKRALMETLTCLRRGGADVIISY 287 (300)
Q Consensus 240 vpi~aY~vSgeY~~~r~Aa~~~~~n~~eal~E~~~~~~r~GAD~Ii~y 287 (300)
+||++ ++++ .+.++++..+- ...+.|||.+++-
T Consensus 74 vpvia-Gvg~-------------~~t~~ai~la~-~a~~~Gadavlv~ 106 (300)
T 3eb2_A 74 VPVVA-GVAS-------------TSVADAVAQAK-LYEKLGADGILAI 106 (300)
T ss_dssp SCBEE-EEEE-------------SSHHHHHHHHH-HHHHHTCSEEEEE
T ss_pred CcEEE-eCCC-------------CCHHHHHHHHH-HHHHcCCCEEEEc
Confidence 99998 4422 35667755444 4447899988874
No 25
>3qze_A DHDPS, dihydrodipicolinate synthase; alpha beta barrel, cytoplasmic; 1.59A {Pseudomonas aeruginosa} PDB: 3puo_A* 3noe_A 3ps7_A* 3s8h_A
Probab=91.70 E-value=1.2 Score=41.06 Aligned_cols=82 Identities=18% Similarity=0.325 Sum_probs=53.9
Q ss_pred ccCCCcccchHhHHHHHHHHHhhhcccccCCCCCccccchhhhcCCceeeccC------cch---HHHHHHHHHhh-CCC
Q psy15126 170 FNEDGSIHYEKTLKRLADISKAFSDAVYVPNHNTDRFQARDVSQGADFLMVKP------ALP---YLDIISEVKSR-HPA 239 (300)
Q Consensus 170 ~~~~g~i~nd~tl~~l~~~a~~~a~~~~~~~~n~~~~~~~Da~~GADivmVkP------smm---~ld~Ir~~~d~-~~~ 239 (300)
|++||+|+.+..-+.+..+ ++.|+|-|.|.= ++. +..+++.+.+. -..
T Consensus 35 f~~dg~iD~~~l~~lv~~l----------------------i~~Gv~Gl~v~GtTGE~~~Ls~~Er~~v~~~~v~~~~gr 92 (314)
T 3qze_A 35 FDAQGRLDWDSLAKLVDFH----------------------LQEGTNAIVAVGTTGESATLDVEEHIQVIRRVVDQVKGR 92 (314)
T ss_dssp BCTTSCBCHHHHHHHHHHH----------------------HHHTCCEEEESSGGGTGGGCCHHHHHHHHHHHHHHHTTS
T ss_pred CCCCCCcCHHHHHHHHHHH----------------------HHcCCCEEEECccccChhhCCHHHHHHHHHHHHHHhCCC
Confidence 4677888877664443333 788999887753 322 77888888776 346
Q ss_pred CCEEeEecccccHHHHHHHhCCCCCHHHHHHHHHHHHHHcCCCEEEecc
Q psy15126 240 YPLFVYQVSGEYAMLAFAAQAGALDLKRALMETLTCLRRGGADVIISYY 288 (300)
Q Consensus 240 vpi~aY~vSgeY~~~r~Aa~~~~~n~~eal~E~~~~~~r~GAD~Ii~y~ 288 (300)
+||++ +++ -.+.+|++.-+ +..++.|||.+++-|
T Consensus 93 vpVia-Gvg-------------~~st~eai~la-~~A~~~Gadavlv~~ 126 (314)
T 3qze_A 93 IPVIA-GTG-------------ANSTREAVALT-EAAKSGGADACLLVT 126 (314)
T ss_dssp SCEEE-ECC-------------CSSHHHHHHHH-HHHHHTTCSEEEEEC
T ss_pred CcEEE-eCC-------------CcCHHHHHHHH-HHHHHcCCCEEEEcC
Confidence 99998 442 23566665444 444478999888743
No 26
>1xky_A Dihydrodipicolinate synthase; TIM barrel, , lysine biosynthesis;spine, lyase; 1.94A {Bacillus anthracis} SCOP: c.1.10.1 PDB: 1xl9_A 3hij_A*
Probab=91.68 E-value=1.4 Score=40.20 Aligned_cols=81 Identities=20% Similarity=0.311 Sum_probs=53.1
Q ss_pred ccCCCcccchHhHHHHHHHHHhhhcccccCCCCCccccchhhhcCCceeeccCc------ch---HHHHHHHHHhh-CCC
Q psy15126 170 FNEDGSIHYEKTLKRLADISKAFSDAVYVPNHNTDRFQARDVSQGADFLMVKPA------LP---YLDIISEVKSR-HPA 239 (300)
Q Consensus 170 ~~~~g~i~nd~tl~~l~~~a~~~a~~~~~~~~n~~~~~~~Da~~GADivmVkPs------mm---~ld~Ir~~~d~-~~~ 239 (300)
|++||+||.+..-+.+-.+ ++.|+|-|.|.=+ +. +..+++.+.+. -.+
T Consensus 24 f~~dg~iD~~~l~~lv~~l----------------------i~~Gv~gl~v~GtTGE~~~Ls~eEr~~v~~~~~~~~~gr 81 (301)
T 1xky_A 24 FDINGNIDFAKTTKLVNYL----------------------IDNGTTAIVVGGTTGESPTLTSEEKVALYRHVVSVVDKR 81 (301)
T ss_dssp BCTTSSBCHHHHHHHHHHH----------------------HHTTCCEEEESSTTTTGGGSCHHHHHHHHHHHHHHHTTS
T ss_pred CCCCCCcCHHHHHHHHHHH----------------------HHcCCCEEEECccccChhhCCHHHHHHHHHHHHHHhCCC
Confidence 4678898877764443333 7889999877432 22 78888888776 347
Q ss_pred CCEEeEecccccHHHHHHHhCCCCCHHHHHHHHHHHHHHcCCCEEEec
Q psy15126 240 YPLFVYQVSGEYAMLAFAAQAGALDLKRALMETLTCLRRGGADVIISY 287 (300)
Q Consensus 240 vpi~aY~vSgeY~~~r~Aa~~~~~n~~eal~E~~~~~~r~GAD~Ii~y 287 (300)
+||++= + |-.+.++++..+-.. ++.|||.+++-
T Consensus 82 vpViaG-v-------------g~~~t~~ai~la~~A-~~~Gadavlv~ 114 (301)
T 1xky_A 82 VPVIAG-T-------------GSNNTHASIDLTKKA-TEVGVDAVMLV 114 (301)
T ss_dssp SCEEEE-C-------------CCSCHHHHHHHHHHH-HHTTCSEEEEE
T ss_pred ceEEeC-C-------------CCCCHHHHHHHHHHH-HhcCCCEEEEc
Confidence 999865 3 223566765544444 46899988773
No 27
>3na8_A Putative dihydrodipicolinate synthetase; lyase; HET: MSE; 1.85A {Pseudomonas aeruginosa}
Probab=91.52 E-value=1.5 Score=40.30 Aligned_cols=82 Identities=13% Similarity=0.226 Sum_probs=54.3
Q ss_pred ccCCCcccchHhHHHHHHHHHhhhcccccCCCCCccccchhhhcCCceeeccCc------ch---HHHHHHHHHhh-CCC
Q psy15126 170 FNEDGSIHYEKTLKRLADISKAFSDAVYVPNHNTDRFQARDVSQGADFLMVKPA------LP---YLDIISEVKSR-HPA 239 (300)
Q Consensus 170 ~~~~g~i~nd~tl~~l~~~a~~~a~~~~~~~~n~~~~~~~Da~~GADivmVkPs------mm---~ld~Ir~~~d~-~~~ 239 (300)
|++||+|+.+..-+.+... ++.|+|-|.|.=+ +. +..+++.+.+. -.+
T Consensus 36 f~~dg~iD~~~l~~lv~~l----------------------i~~Gv~Gi~v~GtTGE~~~Ls~~Er~~v~~~~v~~~~gr 93 (315)
T 3na8_A 36 FAADGGLDLPALGRSIERL----------------------IDGGVHAIAPLGSTGEGAYLSDPEWDEVVDFTLKTVAHR 93 (315)
T ss_dssp BCTTSSBCHHHHHHHHHHH----------------------HHTTCSEEECSSGGGTGGGSCHHHHHHHHHHHHHHHTTS
T ss_pred CCCCCCcCHHHHHHHHHHH----------------------HHcCCCEEEECccccChhhCCHHHHHHHHHHHHHHhCCC
Confidence 3577888877765444333 7899998866543 21 78888888876 447
Q ss_pred CCEEeEecccccHHHHHHHhCCCCCHHHHHHHHHHHHHHcCCCEEEecc
Q psy15126 240 YPLFVYQVSGEYAMLAFAAQAGALDLKRALMETLTCLRRGGADVIISYY 288 (300)
Q Consensus 240 vpi~aY~vSgeY~~~r~Aa~~~~~n~~eal~E~~~~~~r~GAD~Ii~y~ 288 (300)
+||++- + |-.+.++++..+-. ..+.|||.+++-+
T Consensus 94 vpViaG-v-------------g~~~t~~ai~la~~-A~~~Gadavlv~~ 127 (315)
T 3na8_A 94 VPTIVS-V-------------SDLTTAKTVRRAQF-AESLGAEAVMVLP 127 (315)
T ss_dssp SCBEEE-C-------------CCSSHHHHHHHHHH-HHHTTCSEEEECC
T ss_pred CcEEEe-c-------------CCCCHHHHHHHHHH-HHhcCCCEEEECC
Confidence 999984 4 22356666554444 4468999888743
No 28
>4af0_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase, GTP biosynthesis, drug resistance; HET: MOA IMP; 2.20A {Cryptococcus neoformans} PDB: 4af0_B*
Probab=91.43 E-value=0.41 Score=48.54 Aligned_cols=58 Identities=19% Similarity=0.216 Sum_probs=46.0
Q ss_pred hhcCCceeeccCcc----hHHHHHHHHHhhCCCCCEEeEecccccHHHHHHHhCCCCCHHHHHHHHHHHHHHcCCCEEEe
Q psy15126 211 VSQGADFLMVKPAL----PYLDIISEVKSRHPAYPLFVYQVSGEYAMLAFAAQAGALDLKRALMETLTCLRRGGADVIIS 286 (300)
Q Consensus 211 a~~GADivmVkPsm----m~ld~Ir~~~d~~~~vpi~aY~vSgeY~~~r~Aa~~~~~n~~eal~E~~~~~~r~GAD~Ii~ 286 (300)
+++|+|+|.|--+- ..++.|+.+++.||++||++=+| .. .|..+.+.++|||.|.|
T Consensus 290 v~AGvD~iviD~ahGhs~~v~~~i~~ik~~~p~~~viaGNV---------------aT-----~e~a~~Li~aGAD~vkV 349 (556)
T 4af0_A 290 AEAGLDVVVLDSSQGNSVYQIEFIKWIKQTYPKIDVIAGNV---------------VT-----REQAAQLIAAGADGLRI 349 (556)
T ss_dssp HHTTCCEEEECCSCCCSHHHHHHHHHHHHHCTTSEEEEEEE---------------CS-----HHHHHHHHHHTCSEEEE
T ss_pred HhcCCcEEEEeccccccHHHHHHHHHHHhhCCcceEEeccc---------------cC-----HHHHHHHHHcCCCEEee
Confidence 78999999887662 27999999999999999999988 22 34445666799999976
Q ss_pred cc
Q psy15126 287 YY 288 (300)
Q Consensus 287 y~ 288 (300)
--
T Consensus 350 Gi 351 (556)
T 4af0_A 350 GM 351 (556)
T ss_dssp CS
T ss_pred cC
Confidence 43
No 29
>2wkj_A N-acetylneuraminate lyase; directed evolution, sialic acid mimetics, aldolase, S base, carbohydrate metabolism, N-acetylneuraminic acid LYAS; HET: KPI PYR; 1.45A {Escherichia coli} PDB: 2wnq_A 2xfw_A* 2wpb_A* 2wnz_A* 2ygy_A* 2wo5_A* 2wnn_A* 3lbm_A 3lbc_A 3lcf_A 3lcl_A 3lcg_A 3lch_A 3lci_A 1hl2_A 1fdy_A 1fdz_A 1nal_1 3lcx_A 3lcw_A
Probab=91.33 E-value=1.3 Score=40.36 Aligned_cols=80 Identities=16% Similarity=0.198 Sum_probs=53.1
Q ss_pred ccCCCcccchHhHHHHHHHHHhhhcccccCCCCCccccchhhhcCCceeeccCc------ch---HHHHHHHHHhh-CCC
Q psy15126 170 FNEDGSIHYEKTLKRLADISKAFSDAVYVPNHNTDRFQARDVSQGADFLMVKPA------LP---YLDIISEVKSR-HPA 239 (300)
Q Consensus 170 ~~~~g~i~nd~tl~~l~~~a~~~a~~~~~~~~n~~~~~~~Da~~GADivmVkPs------mm---~ld~Ir~~~d~-~~~ 239 (300)
|++||+|+.+..-+.+-.. ++.|+|-|.|.=+ +. +..+++.+.+. -.+
T Consensus 23 F~~dg~iD~~~l~~lv~~l----------------------i~~Gv~Gl~v~GtTGE~~~Ls~eEr~~v~~~~~~~~~gr 80 (303)
T 2wkj_A 23 FDQQQALDKASLRRLVQFN----------------------IQQGIDGLYVGGSTGEAFVQSLSEREQVLEIVAEEAKGK 80 (303)
T ss_dssp BCTTSSBCHHHHHHHHHHH----------------------HHTTCSEEEESSTTTTGGGSCHHHHHHHHHHHHHHHTTT
T ss_pred CCCCCCcCHHHHHHHHHHH----------------------HHcCCCEEEECeeccChhhCCHHHHHHHHHHHHHHhCCC
Confidence 4678999877764443333 7889999877533 22 78888888876 347
Q ss_pred CCEEeEecccccHHHHHHHhCCCCCHHHHHHHHHHHHHHcCCCEEEe
Q psy15126 240 YPLFVYQVSGEYAMLAFAAQAGALDLKRALMETLTCLRRGGADVIIS 286 (300)
Q Consensus 240 vpi~aY~vSgeY~~~r~Aa~~~~~n~~eal~E~~~~~~r~GAD~Ii~ 286 (300)
+||++- + |-.+.++++..+-.. ++.|||.+++
T Consensus 81 vpViaG-v-------------g~~~t~~ai~la~~A-~~~Gadavlv 112 (303)
T 2wkj_A 81 IKLIAH-V-------------GCVSTAESQQLAASA-KRYGFDAVSA 112 (303)
T ss_dssp SEEEEE-C-------------CCSSHHHHHHHHHHH-HHHTCSEEEE
T ss_pred CcEEEe-c-------------CCCCHHHHHHHHHHH-HhCCCCEEEe
Confidence 999985 3 223566665444444 4689988877
No 30
>3i4e_A Isocitrate lyase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.69A {Burkholderia pseudomallei}
Probab=91.32 E-value=1.8 Score=42.76 Aligned_cols=40 Identities=20% Similarity=0.332 Sum_probs=27.8
Q ss_pred hhcCCceeeccCcchHHHHHHHHHhh----CCCCCEEeEecccccH
Q psy15126 211 VSQGADFLMVKPALPYLDIISEVKSR----HPAYPLFVYQVSGEYA 252 (300)
Q Consensus 211 a~~GADivmVkPsmm~ld~Ir~~~d~----~~~vpi~aY~vSgeY~ 252 (300)
++ |||+|++.|..+-++.|++..+. +| +++++|..|-.|.
T Consensus 281 ~~-GAD~if~E~~~~~~eei~~f~~~v~~~~P-~~~l~~~~sPsfn 324 (439)
T 3i4e_A 281 AP-YADLIWCETGKPDLEYAKKFAEAIHKQFP-GKLLSYNCSPSFN 324 (439)
T ss_dssp TT-TCSEEEECCSSCCHHHHHHHHHHHHHHST-TCEEEEECCSSSC
T ss_pred Hh-hCCEEEecCCCCCHHHHHHHHHHhcccCC-ceEEeeCCCCCCc
Confidence 45 99999998876655555555443 65 7888998765443
No 31
>1f6k_A N-acetylneuraminate lyase; beta barrel; 1.60A {Haemophilus influenzae} SCOP: c.1.10.1 PDB: 1f5z_A 1f6p_A 1f73_A* 1f74_A* 1f7b_A*
Probab=91.07 E-value=1.5 Score=39.62 Aligned_cols=81 Identities=25% Similarity=0.262 Sum_probs=53.6
Q ss_pred ccCCCcccchHhHHHHHHHHHhhhcccccCCCCCccccchhhh-cCCceeecc------Ccch---HHHHHHHHHhh-CC
Q psy15126 170 FNEDGSIHYEKTLKRLADISKAFSDAVYVPNHNTDRFQARDVS-QGADFLMVK------PALP---YLDIISEVKSR-HP 238 (300)
Q Consensus 170 ~~~~g~i~nd~tl~~l~~~a~~~a~~~~~~~~n~~~~~~~Da~-~GADivmVk------Psmm---~ld~Ir~~~d~-~~ 238 (300)
|++||+||.+..-+.+-.+ ++ .|.|-|.|. |++. +..+++.+.+. -.
T Consensus 15 f~~dg~iD~~~l~~lv~~l----------------------i~~~Gv~gl~~~GttGE~~~Ls~~Er~~v~~~~~~~~~g 72 (293)
T 1f6k_A 15 FNEDGTINEKGLRQIIRHN----------------------IDKMKVDGLYVGGSTGENFMLSTEEKKEIFRIAKDEAKD 72 (293)
T ss_dssp BCTTSCBCHHHHHHHHHHH----------------------HHTSCCSEEEESSGGGTGGGSCHHHHHHHHHHHHHHHTT
T ss_pred CCCCCCcCHHHHHHHHHHH----------------------HhhCCCcEEEeCccccchhhCCHHHHHHHHHHHHHHhCC
Confidence 4668888877664443333 67 899998774 3332 78888888876 34
Q ss_pred CCCEEeEecccccHHHHHHHhCCCCCHHHHHHHHHHHHHHcCCCEEEec
Q psy15126 239 AYPLFVYQVSGEYAMLAFAAQAGALDLKRALMETLTCLRRGGADVIISY 287 (300)
Q Consensus 239 ~vpi~aY~vSgeY~~~r~Aa~~~~~n~~eal~E~~~~~~r~GAD~Ii~y 287 (300)
++||++- + |-.+.++++..+-.. ++.|||.+++-
T Consensus 73 rvpviaG-v-------------g~~~t~~ai~la~~a-~~~Gadavlv~ 106 (293)
T 1f6k_A 73 QIALIAQ-V-------------GSVNLKEAVELGKYA-TELGYDCLSAV 106 (293)
T ss_dssp SSEEEEE-C-------------CCSCHHHHHHHHHHH-HHHTCSEEEEE
T ss_pred CCeEEEe-c-------------CCCCHHHHHHHHHHH-HhcCCCEEEEC
Confidence 6999865 3 234667776544444 47899988873
No 32
>3fkr_A L-2-keto-3-deoxyarabonate dehydratase; DHDPS/NAL family, complex, pyruvate, lyase; HET: KPI; 1.80A {Azospirillum brasilense} PDB: 3fkk_A
Probab=90.96 E-value=1.7 Score=39.90 Aligned_cols=81 Identities=11% Similarity=0.204 Sum_probs=54.7
Q ss_pred ccCCCcccchHhHHHHHHHHHhhhcccccCCCCCccccchhhhcCCceeeccCc------ch---HHHHHHHHHhh-CCC
Q psy15126 170 FNEDGSIHYEKTLKRLADISKAFSDAVYVPNHNTDRFQARDVSQGADFLMVKPA------LP---YLDIISEVKSR-HPA 239 (300)
Q Consensus 170 ~~~~g~i~nd~tl~~l~~~a~~~a~~~~~~~~n~~~~~~~Da~~GADivmVkPs------mm---~ld~Ir~~~d~-~~~ 239 (300)
|++||+|+.+..-+.+-.+ ++.|+|-|.|.=+ +. +..+++.+.+. -.+
T Consensus 20 f~~dg~iD~~~l~~lv~~l----------------------i~~Gv~gl~v~GtTGE~~~Ls~~Er~~v~~~~~~~~~gr 77 (309)
T 3fkr_A 20 FADTGDLDLASQKRAVDFM----------------------IDAGSDGLCILANFSEQFAITDDERDVLTRTILEHVAGR 77 (309)
T ss_dssp BCTTSSBCHHHHHHHHHHH----------------------HHTTCSCEEESSGGGTGGGSCHHHHHHHHHHHHHHHTTS
T ss_pred CCcCCCcCHHHHHHHHHHH----------------------HHcCCCEEEECccccCcccCCHHHHHHHHHHHHHHhCCC
Confidence 4678888877664443332 7899998877533 22 78888888776 457
Q ss_pred CCEEeEecccccHHHHHHHhCCCCCHHHHHHHHHHHHHHcCCCEEEec
Q psy15126 240 YPLFVYQVSGEYAMLAFAAQAGALDLKRALMETLTCLRRGGADVIISY 287 (300)
Q Consensus 240 vpi~aY~vSgeY~~~r~Aa~~~~~n~~eal~E~~~~~~r~GAD~Ii~y 287 (300)
+||++-- |-.+.++++..+ +...+.|||.+++-
T Consensus 78 vpviaGv--------------g~~~t~~ai~la-~~A~~~Gadavlv~ 110 (309)
T 3fkr_A 78 VPVIVTT--------------SHYSTQVCAARS-LRAQQLGAAMVMAM 110 (309)
T ss_dssp SCEEEEC--------------CCSSHHHHHHHH-HHHHHTTCSEEEEC
T ss_pred CcEEEec--------------CCchHHHHHHHH-HHHHHcCCCEEEEc
Confidence 9999862 234677775444 44447999999874
No 33
>2r8w_A AGR_C_1641P; APC7498, dihydrodipicolinate synthase, agrobacterium tumefac C58, structural genomics, PSI-2; HET: MSE; 1.80A {Agrobacterium tumefaciens str}
Probab=90.95 E-value=1.2 Score=41.30 Aligned_cols=81 Identities=17% Similarity=0.163 Sum_probs=52.7
Q ss_pred ccCCCcccchHhHHHHHHHHHhhhcccccCCCCCccccchhhhcCCceeeccCc------ch---HHHHHHHHHhh-CCC
Q psy15126 170 FNEDGSIHYEKTLKRLADISKAFSDAVYVPNHNTDRFQARDVSQGADFLMVKPA------LP---YLDIISEVKSR-HPA 239 (300)
Q Consensus 170 ~~~~g~i~nd~tl~~l~~~a~~~a~~~~~~~~n~~~~~~~Da~~GADivmVkPs------mm---~ld~Ir~~~d~-~~~ 239 (300)
|++||+|+.+..-+.+-.. ++.|+|-|.|.=+ +. +..+++.+.+. -..
T Consensus 46 F~~dg~iD~~~l~~lv~~l----------------------i~~Gv~Gl~v~GtTGE~~~Ls~eEr~~vi~~~ve~~~gr 103 (332)
T 2r8w_A 46 ADEAGRVDIEAFSALIARL----------------------DAAEVDSVGILGSTGIYMYLTREERRRAIEAAATILRGR 103 (332)
T ss_dssp BCTTCCBCHHHHHHHHHHH----------------------HHHTCSEEEESSTTTTGGGSCHHHHHHHHHHHHHHHTTS
T ss_pred cCCCCCcCHHHHHHHHHHH----------------------HHcCCCEEEECccccChhhCCHHHHHHHHHHHHHHhCCC
Confidence 3667888877654443333 6889999876432 22 78888888876 346
Q ss_pred CCEEeEecccccHHHHHHHhCCCCCHHHHHHHHHHHHHHcCCCEEEec
Q psy15126 240 YPLFVYQVSGEYAMLAFAAQAGALDLKRALMETLTCLRRGGADVIISY 287 (300)
Q Consensus 240 vpi~aY~vSgeY~~~r~Aa~~~~~n~~eal~E~~~~~~r~GAD~Ii~y 287 (300)
+||++= ++ -.+.++++..+-.. ++.|||.+++-
T Consensus 104 vpViaG-vg-------------~~st~eai~la~~A-~~~Gadavlv~ 136 (332)
T 2r8w_A 104 RTLMAG-IG-------------ALRTDEAVALAKDA-EAAGADALLLA 136 (332)
T ss_dssp SEEEEE-EC-------------CSSHHHHHHHHHHH-HHHTCSEEEEC
T ss_pred CcEEEe-cC-------------CCCHHHHHHHHHHH-HhcCCCEEEEC
Confidence 999984 42 23566765444444 46899988873
No 34
>3flu_A DHDPS, dihydrodipicolinate synthase; TIM barrel, beta-alpha-barrel, amino-acid biosynthesis, diaminopimelate biosynthesis; 2.00A {Neisseria meningitidis serogroup B} SCOP: c.1.10.0
Probab=90.95 E-value=2 Score=38.95 Aligned_cols=82 Identities=23% Similarity=0.332 Sum_probs=53.7
Q ss_pred ccCCCcccchHhHHHHHHHHHhhhcccccCCCCCccccchhhhcCCceeeccCc------ch---HHHHHHHHHhh-CCC
Q psy15126 170 FNEDGSIHYEKTLKRLADISKAFSDAVYVPNHNTDRFQARDVSQGADFLMVKPA------LP---YLDIISEVKSR-HPA 239 (300)
Q Consensus 170 ~~~~g~i~nd~tl~~l~~~a~~~a~~~~~~~~n~~~~~~~Da~~GADivmVkPs------mm---~ld~Ir~~~d~-~~~ 239 (300)
|++||+|+.+..-+.+... ++.|+|-|.|.=+ +. +..+++.+.+. -.+
T Consensus 19 f~~dg~iD~~~l~~lv~~l----------------------i~~Gv~gl~~~GttGE~~~Ls~~Er~~v~~~~~~~~~gr 76 (297)
T 3flu_A 19 MNQDGSIHYEQLRDLIDWH----------------------IENGTDGIVAVGTTGESATLSVEEHTAVIEAVVKHVAKR 76 (297)
T ss_dssp BCTTSCBCHHHHHHHHHHH----------------------HHTTCCEEEESSTTTTGGGSCHHHHHHHHHHHHHHHTTS
T ss_pred CCCCCCcCHHHHHHHHHHH----------------------HHcCCCEEEeCccccCcccCCHHHHHHHHHHHHHHhCCC
Confidence 4677888877664443333 7899998876543 11 77888888776 347
Q ss_pred CCEEeEecccccHHHHHHHhCCCCCHHHHHHHHHHHHHHcCCCEEEecc
Q psy15126 240 YPLFVYQVSGEYAMLAFAAQAGALDLKRALMETLTCLRRGGADVIISYY 288 (300)
Q Consensus 240 vpi~aY~vSgeY~~~r~Aa~~~~~n~~eal~E~~~~~~r~GAD~Ii~y~ 288 (300)
+||++ ++++ .+.++++..+-.. ++.|||.+++-+
T Consensus 77 vpvia-Gvg~-------------~~t~~ai~la~~a-~~~Gadavlv~~ 110 (297)
T 3flu_A 77 VPVIA-GTGA-------------NNTVEAIALSQAA-EKAGADYTLSVV 110 (297)
T ss_dssp SCEEE-ECCC-------------SSHHHHHHHHHHH-HHTTCSEEEEEC
T ss_pred CcEEE-eCCC-------------cCHHHHHHHHHHH-HHcCCCEEEECC
Confidence 99998 4522 3566775555444 478999887643
No 35
>3b4u_A Dihydrodipicolinate synthase; structural genomics, PSI-2, MC protein structure initiative, midwest center for structural genomics; 1.20A {Agrobacterium tumefaciens str}
Probab=90.91 E-value=1.3 Score=40.15 Aligned_cols=81 Identities=16% Similarity=0.183 Sum_probs=53.7
Q ss_pred ccCCCcccchHhHHHHHHHHHhhhcccccCCCCCccccchhhhcCCceeeccC------cch---HHHHHHHHHhh-CCC
Q psy15126 170 FNEDGSIHYEKTLKRLADISKAFSDAVYVPNHNTDRFQARDVSQGADFLMVKP------ALP---YLDIISEVKSR-HPA 239 (300)
Q Consensus 170 ~~~~g~i~nd~tl~~l~~~a~~~a~~~~~~~~n~~~~~~~Da~~GADivmVkP------smm---~ld~Ir~~~d~-~~~ 239 (300)
|++||+||.+..-+.+-.. ++.|+|-|.|.= ++. +..+++.+.+. -.+
T Consensus 15 f~~dg~iD~~~l~~lv~~l----------------------i~~Gv~gl~~~GttGE~~~Ls~~Er~~v~~~~~~~~~gr 72 (294)
T 3b4u_A 15 FKTDGTVDIDAMIAHARRC----------------------LSNGCDSVTLFGTTGEGCSVGSRERQAILSSFIAAGIAP 72 (294)
T ss_dssp BCTTSSBCHHHHHHHHHHH----------------------HHTTCSEEEESSTTTTGGGSCHHHHHHHHHHHHHTTCCG
T ss_pred CCCCCCcCHHHHHHHHHHH----------------------HHcCCCEEEECccccChhhCCHHHHHHHHHHHHHHhCCC
Confidence 4678888877764443333 788999987743 322 78888888876 346
Q ss_pred CCEEeEecccccHHHHHHHhCCCCCHHHHHHHHHHHHHHcCCCEEEec
Q psy15126 240 YPLFVYQVSGEYAMLAFAAQAGALDLKRALMETLTCLRRGGADVIISY 287 (300)
Q Consensus 240 vpi~aY~vSgeY~~~r~Aa~~~~~n~~eal~E~~~~~~r~GAD~Ii~y 287 (300)
+||++= + |-.+.++++..+-.. .+.|||.+++-
T Consensus 73 ~pviaG-v-------------g~~~t~~ai~la~~A-~~~Gadavlv~ 105 (294)
T 3b4u_A 73 SRIVTG-V-------------LVDSIEDAADQSAEA-LNAGARNILLA 105 (294)
T ss_dssp GGEEEE-E-------------CCSSHHHHHHHHHHH-HHTTCSEEEEC
T ss_pred CcEEEe-C-------------CCccHHHHHHHHHHH-HhcCCCEEEEc
Confidence 899865 3 223566665544444 46899988873
No 36
>3tak_A DHDPS, dihydrodipicolinate synthase; TIM barrel, lysine biosynthesis, pyruvate, lyase; 1.42A {Acinetobacter baumannii} PDB: 3pud_A* 3pue_A* 3pul_A 3rk8_A 3tce_A* 3tdf_A 3u8g_A 3uqn_A 4dxv_A
Probab=90.81 E-value=1.8 Score=39.10 Aligned_cols=82 Identities=18% Similarity=0.214 Sum_probs=54.3
Q ss_pred ccCCCcccchHhHHHHHHHHHhhhcccccCCCCCccccchhhhcCCceeeccCc------ch---HHHHHHHHHhh-CCC
Q psy15126 170 FNEDGSIHYEKTLKRLADISKAFSDAVYVPNHNTDRFQARDVSQGADFLMVKPA------LP---YLDIISEVKSR-HPA 239 (300)
Q Consensus 170 ~~~~g~i~nd~tl~~l~~~a~~~a~~~~~~~~n~~~~~~~Da~~GADivmVkPs------mm---~ld~Ir~~~d~-~~~ 239 (300)
|++||+|+.+..-+.+... ++.|+|-|.|.=+ +. +..+++.+.+. -..
T Consensus 13 f~~dg~iD~~~l~~lv~~l----------------------i~~Gv~gl~~~GttGE~~~Ls~~Er~~v~~~~~~~~~gr 70 (291)
T 3tak_A 13 MLKDGGVDWKSLEKLVEWH----------------------IEQGTNSIVAVGTTGEASTLSMEEHTQVIKEIIRVANKR 70 (291)
T ss_dssp BCTTSCBCHHHHHHHHHHH----------------------HHHTCCEEEESSTTTTGGGSCHHHHHHHHHHHHHHHTTS
T ss_pred CCCCCCcCHHHHHHHHHHH----------------------HHCCCCEEEECccccccccCCHHHHHHHHHHHHHHhCCC
Confidence 4678888877764443333 6889998866543 11 78888888776 346
Q ss_pred CCEEeEecccccHHHHHHHhCCCCCHHHHHHHHHHHHHHcCCCEEEecc
Q psy15126 240 YPLFVYQVSGEYAMLAFAAQAGALDLKRALMETLTCLRRGGADVIISYY 288 (300)
Q Consensus 240 vpi~aY~vSgeY~~~r~Aa~~~~~n~~eal~E~~~~~~r~GAD~Ii~y~ 288 (300)
+||++- ++ -.+.++++..+-... +.|||.+++-+
T Consensus 71 ~pviaG-vg-------------~~~t~~ai~la~~a~-~~Gadavlv~~ 104 (291)
T 3tak_A 71 IPIIAG-TG-------------ANSTREAIELTKAAK-DLGADAALLVT 104 (291)
T ss_dssp SCEEEE-CC-------------CSSHHHHHHHHHHHH-HHTCSEEEEEC
T ss_pred CeEEEe-CC-------------CCCHHHHHHHHHHHH-hcCCCEEEEcC
Confidence 999984 42 246677765554444 78999888743
No 37
>3cpr_A Dihydrodipicolinate synthetase; (beta/alpha)8-barrel fold with A C-terminal alpha-helical segment, amino-acid biosynthesis, cytoplasm; HET: MCL; 2.20A {Corynebacterium glutamicum}
Probab=90.81 E-value=1.9 Score=39.31 Aligned_cols=81 Identities=21% Similarity=0.290 Sum_probs=53.1
Q ss_pred ccCCCcccchHhHHHHHHHHHhhhcccccCCCCCccccchhhhcCCceeeccC------cch---HHHHHHHHHhh-CCC
Q psy15126 170 FNEDGSIHYEKTLKRLADISKAFSDAVYVPNHNTDRFQARDVSQGADFLMVKP------ALP---YLDIISEVKSR-HPA 239 (300)
Q Consensus 170 ~~~~g~i~nd~tl~~l~~~a~~~a~~~~~~~~n~~~~~~~Da~~GADivmVkP------smm---~ld~Ir~~~d~-~~~ 239 (300)
|++||+||.+..-+.+..+ ++.|+|-|.|.= ++. +..+++.+.+. -.+
T Consensus 28 f~~dg~iD~~~l~~lv~~l----------------------i~~Gv~gl~v~GttGE~~~Ls~~Er~~v~~~~~~~~~gr 85 (304)
T 3cpr_A 28 FTESGDIDIAAGREVAAYL----------------------VDKGLDSLVLAGTTGESPTTTAAEKLELLKAVREEVGDR 85 (304)
T ss_dssp BCTTSCBCHHHHHHHHHHH----------------------HHTTCCEEEESSTTTTTTTSCHHHHHHHHHHHHHHHTTT
T ss_pred CCCCCCcCHHHHHHHHHHH----------------------HHcCCCEEEECccccChhhCCHHHHHHHHHHHHHHhCCC
Confidence 4667888777654333222 788999987743 322 78888888776 346
Q ss_pred CCEEeEecccccHHHHHHHhCCCCCHHHHHHHHHHHHHHcCCCEEEec
Q psy15126 240 YPLFVYQVSGEYAMLAFAAQAGALDLKRALMETLTCLRRGGADVIISY 287 (300)
Q Consensus 240 vpi~aY~vSgeY~~~r~Aa~~~~~n~~eal~E~~~~~~r~GAD~Ii~y 287 (300)
+||++= + |-.+.++++..+-... +.|||.+++-
T Consensus 86 vpviaG-v-------------g~~st~~ai~la~~A~-~~Gadavlv~ 118 (304)
T 3cpr_A 86 AKLIAG-V-------------GTNNTRTSVELAEAAA-SAGADGLLVV 118 (304)
T ss_dssp SEEEEE-C-------------CCSCHHHHHHHHHHHH-HTTCSEEEEE
T ss_pred CcEEec-C-------------CCCCHHHHHHHHHHHH-hcCCCEEEEC
Confidence 999865 3 2346677765555444 6899988773
No 38
>2ojp_A DHDPS, dihydrodipicolinate synthase; dimer, lysine biosynthe lyase; HET: KGC GOL; 1.70A {Escherichia coli} PDB: 1yxc_A 1dhp_A 1yxd_A* 2ats_A* 3du0_A* 3c0j_A* 3ubs_A* 4eou_A* 3i7q_A* 3i7r_A* 3i7s_A* 2pur_A* 1s5v_A 1s5w_A 1s5t_A 3den_A* 2a6l_A 2a6n_A 3g0s_A
Probab=90.64 E-value=1.3 Score=40.18 Aligned_cols=81 Identities=16% Similarity=0.151 Sum_probs=52.4
Q ss_pred ccCCCcccchHhHHHHHHHHHhhhcccccCCCCCccccchhhhcCCceeeccCc------ch---HHHHHHHHHhh-CCC
Q psy15126 170 FNEDGSIHYEKTLKRLADISKAFSDAVYVPNHNTDRFQARDVSQGADFLMVKPA------LP---YLDIISEVKSR-HPA 239 (300)
Q Consensus 170 ~~~~g~i~nd~tl~~l~~~a~~~a~~~~~~~~n~~~~~~~Da~~GADivmVkPs------mm---~ld~Ir~~~d~-~~~ 239 (300)
|++||+|+.+..-+.+-.. ++.|+|-|.|.=+ +. +..+++.+.+. -..
T Consensus 13 f~~dg~iD~~~l~~lv~~l----------------------i~~Gv~gl~~~GttGE~~~Ls~~Er~~v~~~~~~~~~gr 70 (292)
T 2ojp_A 13 MDEKGNVCRASLKKLIDYH----------------------VASGTSAIVSVGTTGESATLNHDEHADVVMMTLDLADGR 70 (292)
T ss_dssp BCTTSCBCHHHHHHHHHHH----------------------HHHTCCEEEESSTTTTGGGSCHHHHHHHHHHHHHHHTTS
T ss_pred CCCCCCcCHHHHHHHHHHH----------------------HHcCCCEEEECccccchhhCCHHHHHHHHHHHHHHhCCC
Confidence 4678888877664443333 6789999877433 22 78888888776 346
Q ss_pred CCEEeEecccccHHHHHHHhCCCCCHHHHHHHHHHHHHHcCCCEEEec
Q psy15126 240 YPLFVYQVSGEYAMLAFAAQAGALDLKRALMETLTCLRRGGADVIISY 287 (300)
Q Consensus 240 vpi~aY~vSgeY~~~r~Aa~~~~~n~~eal~E~~~~~~r~GAD~Ii~y 287 (300)
+||++- + |-.+.++++..+-.. .+.|||.+++-
T Consensus 71 ~pviaG-v-------------g~~~t~~ai~la~~a-~~~Gadavlv~ 103 (292)
T 2ojp_A 71 IPVIAG-T-------------GANATAEAISLTQRF-NDSGIVGCLTV 103 (292)
T ss_dssp SCEEEE-C-------------CCSSHHHHHHHHHHT-TTSSCSEEEEE
T ss_pred CcEEEe-c-------------CCccHHHHHHHHHHH-HhcCCCEEEEC
Confidence 999865 3 223566665444443 46888888773
No 39
>3si9_A DHDPS, dihydrodipicolinate synthase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, TIM barrel; 2.10A {Bartonella henselae}
Probab=90.43 E-value=2.2 Score=39.39 Aligned_cols=81 Identities=16% Similarity=0.184 Sum_probs=54.1
Q ss_pred ccCCCcccchHhHHHHHHHHHhhhcccccCCCCCccccchhhhcCCceeeccCc------ch---HHHHHHHHHhh-CCC
Q psy15126 170 FNEDGSIHYEKTLKRLADISKAFSDAVYVPNHNTDRFQARDVSQGADFLMVKPA------LP---YLDIISEVKSR-HPA 239 (300)
Q Consensus 170 ~~~~g~i~nd~tl~~l~~~a~~~a~~~~~~~~n~~~~~~~Da~~GADivmVkPs------mm---~ld~Ir~~~d~-~~~ 239 (300)
|++||+|+.+..-+.+-.. ++.|+|-|.|.=+ +. +..+++.+.+. -.+
T Consensus 34 f~~dg~iD~~~l~~li~~l----------------------i~~Gv~Gl~v~GtTGE~~~Ls~~Er~~v~~~~v~~~~gr 91 (315)
T 3si9_A 34 FDDNGAIDEKAFCNFVEWQ----------------------ITQGINGVSPVGTTGESPTLTHEEHKRIIELCVEQVAKR 91 (315)
T ss_dssp BCTTSCBCHHHHHHHHHHH----------------------HHTTCSEEECSSTTTTGGGSCHHHHHHHHHHHHHHHTTS
T ss_pred CCCCCCcCHHHHHHHHHHH----------------------HHcCCCEEEeCccccCccccCHHHHHHHHHHHHHHhCCC
Confidence 4678888887764443333 7899999876543 21 78888888776 347
Q ss_pred CCEEeEecccccHHHHHHHhCCCCCHHHHHHHHHHHHHHcCCCEEEec
Q psy15126 240 YPLFVYQVSGEYAMLAFAAQAGALDLKRALMETLTCLRRGGADVIISY 287 (300)
Q Consensus 240 vpi~aY~vSgeY~~~r~Aa~~~~~n~~eal~E~~~~~~r~GAD~Ii~y 287 (300)
+||++ +++ -.+.++++..+- ..++.|||.+++-
T Consensus 92 vpVia-Gvg-------------~~st~~ai~la~-~A~~~Gadavlv~ 124 (315)
T 3si9_A 92 VPVVA-GAG-------------SNSTSEAVELAK-HAEKAGADAVLVV 124 (315)
T ss_dssp SCBEE-ECC-------------CSSHHHHHHHHH-HHHHTTCSEEEEE
T ss_pred CcEEE-eCC-------------CCCHHHHHHHHH-HHHhcCCCEEEEC
Confidence 99998 452 235666654444 4447899988864
No 40
>3s5o_A 4-hydroxy-2-oxoglutarate aldolase, mitochondrial; beta barrel, schiff base, hydroxyproline metabolis; HET: KPI; 1.97A {Homo sapiens} SCOP: c.1.10.0 PDB: 3s5n_A
Probab=90.31 E-value=2.3 Score=38.86 Aligned_cols=80 Identities=18% Similarity=0.198 Sum_probs=54.0
Q ss_pred ccCCCcccchHhHHHHHHHHHhhhcccccCCCCCccccchhhhcCCceeeccCc------ch---HHHHHHHHHhh-CCC
Q psy15126 170 FNEDGSIHYEKTLKRLADISKAFSDAVYVPNHNTDRFQARDVSQGADFLMVKPA------LP---YLDIISEVKSR-HPA 239 (300)
Q Consensus 170 ~~~~g~i~nd~tl~~l~~~a~~~a~~~~~~~~n~~~~~~~Da~~GADivmVkPs------mm---~ld~Ir~~~d~-~~~ 239 (300)
|++||+|+.+.. ++|.+- -++.|.|-|.|.=+ +. +..+++.+.+. -.+
T Consensus 26 f~~dg~iD~~~l-~~lv~~---------------------li~~Gv~Gl~v~GtTGE~~~Ls~~Er~~v~~~~~~~~~gr 83 (307)
T 3s5o_A 26 FTATAEVDYGKL-EENLHK---------------------LGTFPFRGFVVQGSNGEFPFLTSSERLEVVSRVRQAMPKN 83 (307)
T ss_dssp BCTTSCBCHHHH-HHHHHH---------------------HTTSCCSEEEESSGGGTGGGSCHHHHHHHHHHHHHTSCTT
T ss_pred CCCCCCcCHHHH-HHHHHH---------------------HHHcCCCEEEECccccchhhCCHHHHHHHHHHHHHHcCCC
Confidence 467788887755 333332 27899998876543 22 78888888876 357
Q ss_pred CCEEeEecccccHHHHHHHhCCCCCHHHHHHHHHHHHHHcCCCEEEe
Q psy15126 240 YPLFVYQVSGEYAMLAFAAQAGALDLKRALMETLTCLRRGGADVIIS 286 (300)
Q Consensus 240 vpi~aY~vSgeY~~~r~Aa~~~~~n~~eal~E~~~~~~r~GAD~Ii~ 286 (300)
+||++- + |-.+.++++..+- ..++.|||.+++
T Consensus 84 ~pviaG-v-------------g~~~t~~ai~la~-~A~~~Gadavlv 115 (307)
T 3s5o_A 84 RLLLAG-S-------------GCESTQATVEMTV-SMAQVGADAAMV 115 (307)
T ss_dssp SEEEEE-C-------------CCSSHHHHHHHHH-HHHHTTCSEEEE
T ss_pred CcEEEe-c-------------CCCCHHHHHHHHH-HHHHcCCCEEEE
Confidence 999884 4 2246777765544 444799999988
No 41
>3hzh_A Chemotaxis response regulator (CHEY-3); phosphatase, complex, response regulator, receiver domain, two-component signal transduction; HET: BFD; 1.96A {Borrelia burgdorferi}
Probab=90.17 E-value=3.1 Score=32.05 Aligned_cols=78 Identities=14% Similarity=0.206 Sum_probs=49.0
Q ss_pred CCCccccchhhhc--CCceeeccCcch---HHHHHHHHHhhCCCCCEEeEecccccHHHHHHHhCCCCCHHHHHHHHHHH
Q psy15126 201 HNTDRFQARDVSQ--GADFLMVKPALP---YLDIISEVKSRHPAYPLFVYQVSGEYAMLAFAAQAGALDLKRALMETLTC 275 (300)
Q Consensus 201 ~n~~~~~~~Da~~--GADivmVkPsmm---~ld~Ir~~~d~~~~vpi~aY~vSgeY~~~r~Aa~~~~~n~~eal~E~~~~ 275 (300)
.|.......-.+. ..|+|++-..|+ -++.++++++.++++||+..+... +. +. ....
T Consensus 68 ~~~~~al~~l~~~~~~~dliilD~~l~~~~g~~~~~~lr~~~~~~~ii~ls~~~--------------~~-~~---~~~~ 129 (157)
T 3hzh_A 68 ADGEEAVIKYKNHYPNIDIVTLXITMPKMDGITCLSNIMEFDKNARVIMISALG--------------KE-QL---VKDC 129 (157)
T ss_dssp SSHHHHHHHHHHHGGGCCEEEECSSCSSSCHHHHHHHHHHHCTTCCEEEEESCC--------------CH-HH---HHHH
T ss_pred CCHHHHHHHHHhcCCCCCEEEEeccCCCccHHHHHHHHHhhCCCCcEEEEeccC--------------cH-HH---HHHH
Confidence 3433433333344 569998876544 689999999888999999985411 22 11 1123
Q ss_pred HHHcCCCEEEecch--HHHHHHHh
Q psy15126 276 LRRGGADVIISYYT--PRVLEWLR 297 (300)
Q Consensus 276 ~~r~GAD~Ii~y~A--~~~ld~l~ 297 (300)
+ +.||+-++.||- .++.+.|+
T Consensus 130 ~-~~g~~~~l~KP~~~~~l~~~i~ 152 (157)
T 3hzh_A 130 L-IKGAKTFIVKPLDRAKVLQRVM 152 (157)
T ss_dssp H-HTTCSEEEESSCCHHHHHHHHH
T ss_pred H-HcCCCEEEeCCCCHHHHHHHHH
Confidence 3 789999999983 33444443
No 42
>3l21_A DHDPS, dihydrodipicolinate synthase; DAPA, dimer, RV2753C, lysine biosynthesis, amino-acid biosynthesis, diaminopimelate biosynthesis; HET: KPI CME; 2.10A {Mycobacterium tuberculosis} SCOP: c.1.10.1 PDB: 1xxx_A
Probab=90.04 E-value=2.1 Score=39.10 Aligned_cols=82 Identities=20% Similarity=0.299 Sum_probs=54.3
Q ss_pred ccCCCcccchHhHHHHHHHHHhhhcccccCCCCCccccchhhhcCCceeeccCc------ch---HHHHHHHHHhh-CCC
Q psy15126 170 FNEDGSIHYEKTLKRLADISKAFSDAVYVPNHNTDRFQARDVSQGADFLMVKPA------LP---YLDIISEVKSR-HPA 239 (300)
Q Consensus 170 ~~~~g~i~nd~tl~~l~~~a~~~a~~~~~~~~n~~~~~~~Da~~GADivmVkPs------mm---~ld~Ir~~~d~-~~~ 239 (300)
|++||+|+.+..-+.+... ++.|+|-|.|.=+ +. +..+++.+.+. -.+
T Consensus 27 f~~dg~iD~~~l~~lv~~l----------------------i~~Gv~gi~v~GttGE~~~Lt~~Er~~v~~~~~~~~~gr 84 (304)
T 3l21_A 27 FSGDGSLDTATAARLANHL----------------------VDQGCDGLVVSGTTGESPTTTDGEKIELLRAVLEAVGDR 84 (304)
T ss_dssp BCTTSCBCHHHHHHHHHHH----------------------HHTTCSEEEESSTTTTGGGSCHHHHHHHHHHHHHHHTTT
T ss_pred CCCCCCcCHHHHHHHHHHH----------------------HHcCCCEEEeCccccchhhCCHHHHHHHHHHHHHHhCCC
Confidence 4677888877764443333 7889998877533 22 78888888776 347
Q ss_pred CCEEeEecccccHHHHHHHhCCCCCHHHHHHHHHHHHHHcCCCEEEecc
Q psy15126 240 YPLFVYQVSGEYAMLAFAAQAGALDLKRALMETLTCLRRGGADVIISYY 288 (300)
Q Consensus 240 vpi~aY~vSgeY~~~r~Aa~~~~~n~~eal~E~~~~~~r~GAD~Ii~y~ 288 (300)
+||++- + |-.+.++++..+-.. ++.|||.+++-+
T Consensus 85 vpviaG-v-------------g~~~t~~ai~la~~a-~~~Gadavlv~~ 118 (304)
T 3l21_A 85 ARVIAG-A-------------GTYDTAHSIRLAKAC-AAEGAHGLLVVT 118 (304)
T ss_dssp SEEEEE-C-------------CCSCHHHHHHHHHHH-HHHTCSEEEEEC
T ss_pred CeEEEe-C-------------CCCCHHHHHHHHHHH-HHcCCCEEEECC
Confidence 999985 4 223566665544444 468999888753
No 43
>3qfe_A Putative dihydrodipicolinate synthase family PROT; seattle structural genomics center for infectious disease, S coccidioides, valley fever; 2.35A {Coccidioides immitis}
Probab=90.04 E-value=2.1 Score=39.44 Aligned_cols=81 Identities=17% Similarity=0.321 Sum_probs=55.0
Q ss_pred cc-CCCcccchHhHHHHHHHHHhhhcccccCCCCCccccchhhhcCCceeeccCc------ch---HHHHHHHHHhh-CC
Q psy15126 170 FN-EDGSIHYEKTLKRLADISKAFSDAVYVPNHNTDRFQARDVSQGADFLMVKPA------LP---YLDIISEVKSR-HP 238 (300)
Q Consensus 170 ~~-~~g~i~nd~tl~~l~~~a~~~a~~~~~~~~n~~~~~~~Da~~GADivmVkPs------mm---~ld~Ir~~~d~-~~ 238 (300)
|+ +||+|+.+..-+.+... ++.|+|-|.|.=+ +. +..+++.+.+. ..
T Consensus 22 f~~~dg~iD~~~l~~lv~~l----------------------i~~Gv~gl~v~GtTGE~~~Ls~~Er~~v~~~~~~~~~g 79 (318)
T 3qfe_A 22 FDSKTDTLDLASQERYYAYL----------------------ARSGLTGLVILGTNAEAFLLTREERAQLIATARKAVGP 79 (318)
T ss_dssp EETTTTEECHHHHHHHHHHH----------------------HTTTCSEEEESSGGGTGGGSCHHHHHHHHHHHHHHHCT
T ss_pred ccCCCCCCCHHHHHHHHHHH----------------------HHcCCCEEEeCccccChhhCCHHHHHHHHHHHHHHhCC
Confidence 46 78888887764443333 7889998876543 21 78888888876 45
Q ss_pred CCCEEeEecccccHHHHHHHhCCCCCHHHHHHHHHHHHHHcCCCEEEec
Q psy15126 239 AYPLFVYQVSGEYAMLAFAAQAGALDLKRALMETLTCLRRGGADVIISY 287 (300)
Q Consensus 239 ~vpi~aY~vSgeY~~~r~Aa~~~~~n~~eal~E~~~~~~r~GAD~Ii~y 287 (300)
.+||++- + |-.+.++++..+-... +.|||.+++-
T Consensus 80 rvpviaG-v-------------g~~~t~~ai~la~~a~-~~Gadavlv~ 113 (318)
T 3qfe_A 80 DFPIMAG-V-------------GAHSTRQVLEHINDAS-VAGANYVLVL 113 (318)
T ss_dssp TSCEEEE-C-------------CCSSHHHHHHHHHHHH-HHTCSEEEEC
T ss_pred CCcEEEe-C-------------CCCCHHHHHHHHHHHH-HcCCCEEEEe
Confidence 7999984 4 2246677765554444 6899988874
No 44
>2v9d_A YAGE; dihydrodipicolinic acid synthase, N-acetyl neuraminate lyase, NAL, lyase, DHDPS, prophage; 2.15A {Escherichia coli} PDB: 2v8z_A 3nev_A* 3n2x_A*
Probab=89.91 E-value=2 Score=40.18 Aligned_cols=81 Identities=20% Similarity=0.280 Sum_probs=53.3
Q ss_pred ccCCCcccchHhHHHHHHHHHhhhcccccCCCCCccccchhhhcCCceeeccC------cch---HHHHHHHHHhh-CCC
Q psy15126 170 FNEDGSIHYEKTLKRLADISKAFSDAVYVPNHNTDRFQARDVSQGADFLMVKP------ALP---YLDIISEVKSR-HPA 239 (300)
Q Consensus 170 ~~~~g~i~nd~tl~~l~~~a~~~a~~~~~~~~n~~~~~~~Da~~GADivmVkP------smm---~ld~Ir~~~d~-~~~ 239 (300)
|++||+||.+..-+.+-.. ++.|+|-|.|.= ++. +..+++.+.+. -..
T Consensus 43 F~~dg~ID~~~l~~lv~~l----------------------i~~Gv~Gl~v~GtTGE~~~Ls~eEr~~vi~~~ve~~~gr 100 (343)
T 2v9d_A 43 FTADGQLDKPGTAALIDDL----------------------IKAGVDGLFFLGSGGEFSQLGAEERKAIARFAIDHVDRR 100 (343)
T ss_dssp BCTTSSBCHHHHHHHHHHH----------------------HHTTCSCEEESSTTTTGGGSCHHHHHHHHHHHHHHHTTS
T ss_pred CCCCCCcCHHHHHHHHHHH----------------------HHcCCCEEEeCccccChhhCCHHHHHHHHHHHHHHhCCC
Confidence 4678888877764443333 788999887753 322 78888888776 347
Q ss_pred CCEEeEecccccHHHHHHHhCCCCCHHHHHHHHHHHHHHcCCCEEEec
Q psy15126 240 YPLFVYQVSGEYAMLAFAAQAGALDLKRALMETLTCLRRGGADVIISY 287 (300)
Q Consensus 240 vpi~aY~vSgeY~~~r~Aa~~~~~n~~eal~E~~~~~~r~GAD~Ii~y 287 (300)
+||++= + |-.+.++++..+-... +.|||.|++-
T Consensus 101 vpViaG-v-------------g~~st~eai~la~~A~-~~Gadavlv~ 133 (343)
T 2v9d_A 101 VPVLIG-T-------------GGTNARETIELSQHAQ-QAGADGIVVI 133 (343)
T ss_dssp SCEEEE-C-------------CSSCHHHHHHHHHHHH-HHTCSEEEEE
T ss_pred CcEEEe-c-------------CCCCHHHHHHHHHHHH-hcCCCEEEEC
Confidence 999865 3 2236677765444444 6899988773
No 45
>3d0c_A Dihydrodipicolinate synthase; lysine biosynthesis, pyruvate, TIM barrel, NYSGXRC, PSI-2, structural genomics; 1.90A {Oceanobacillus iheyensis HTE831}
Probab=89.50 E-value=1.9 Score=39.59 Aligned_cols=79 Identities=11% Similarity=0.167 Sum_probs=52.8
Q ss_pred cCCCcccchHhHHHHHHHHHhhhcccccCCCCCccccchhhhcCCceeeccCc------ch---HHHHHHHHHhh-CCCC
Q psy15126 171 NEDGSIHYEKTLKRLADISKAFSDAVYVPNHNTDRFQARDVSQGADFLMVKPA------LP---YLDIISEVKSR-HPAY 240 (300)
Q Consensus 171 ~~~g~i~nd~tl~~l~~~a~~~a~~~~~~~~n~~~~~~~Da~~GADivmVkPs------mm---~ld~Ir~~~d~-~~~v 240 (300)
++||+||.+..-+.+-.. ++.|+|-|.|.=+ +. +..+++.+.+. -.++
T Consensus 25 ~~dg~iD~~~l~~lv~~l----------------------i~~Gv~gl~v~GtTGE~~~Ls~eEr~~vi~~~~~~~~grv 82 (314)
T 3d0c_A 25 EGTREIDWKGLDDNVEFL----------------------LQNGIEVIVPNGNTGEFYALTIEEAKQVATRVTELVNGRA 82 (314)
T ss_dssp TTTCCBCHHHHHHHHHHH----------------------HHTTCSEECTTSGGGTGGGSCHHHHHHHHHHHHHHHTTSS
T ss_pred CCCCCCCHHHHHHHHHHH----------------------HHcCCCEEEECcccCChhhCCHHHHHHHHHHHHHHhCCCC
Confidence 677888877764443333 7889999876532 22 78888888876 3479
Q ss_pred CEEeEecccccHHHHHHHhCCCCCHHHHHHHHHHHHHHcCCCEEEec
Q psy15126 241 PLFVYQVSGEYAMLAFAAQAGALDLKRALMETLTCLRRGGADVIISY 287 (300)
Q Consensus 241 pi~aY~vSgeY~~~r~Aa~~~~~n~~eal~E~~~~~~r~GAD~Ii~y 287 (300)
||++= + |- +.++++..+ +..++.|||.+++-
T Consensus 83 pViaG-v-------------g~-st~~ai~la-~~A~~~Gadavlv~ 113 (314)
T 3d0c_A 83 TVVAG-I-------------GY-SVDTAIELG-KSAIDSGADCVMIH 113 (314)
T ss_dssp EEEEE-E-------------CS-SHHHHHHHH-HHHHHTTCSEEEEC
T ss_pred eEEec-C-------------Cc-CHHHHHHHH-HHHHHcCCCEEEEC
Confidence 99985 3 33 556665444 44447899998873
No 46
>3eol_A Isocitrate lyase; seattle structural center for infectious disease, ssgcid; 2.00A {Brucella melitensis} PDB: 3oq8_A 3e5b_A 3p0x_A*
Probab=89.45 E-value=4.2 Score=40.04 Aligned_cols=71 Identities=17% Similarity=0.164 Sum_probs=40.2
Q ss_pred hhcCCceeeccCcchHHHHHHHHHhh----CCCCCEEeEecccccHHHHHHHhCCCCCHHHHHHHHHHHHHHcCCCEEEe
Q psy15126 211 VSQGADFLMVKPALPYLDIISEVKSR----HPAYPLFVYQVSGEYAMLAFAAQAGALDLKRALMETLTCLRRGGADVIIS 286 (300)
Q Consensus 211 a~~GADivmVkPsmm~ld~Ir~~~d~----~~~vpi~aY~vSgeY~~~r~Aa~~~~~n~~eal~E~~~~~~r~GAD~Ii~ 286 (300)
++ |||+|++.|..+-++-|++..+. +| +++++|.-|-.|...+. ++. +-+.....++.+.|..+++.
T Consensus 276 ~~-GAD~If~e~~~~~~eei~~f~~~v~~~~P-~~~L~~~~sPsfnw~~~------~~~-~~~~~f~~eLa~lGv~~v~~ 346 (433)
T 3eol_A 276 AP-YCDLIWMETSKPDLAQARRFAEAVHKAHP-GKLLAYNCSPSFNWKKN------LDD-ATIAKFQRELGAMGYKFQFI 346 (433)
T ss_dssp GG-GCSEEEECCSSCCHHHHHHHHHHHHHHST-TCCEEEECCSSSCHHHH------SCH-HHHHHHHHHHHHHTEEEEEE
T ss_pred Hh-cCCEEEEeCCCCCHHHHHHHHHHhcccCC-CcccccCCCCCCccccc------CCh-hHHhHHHHHHHHcCCeEEEe
Confidence 46 99999997765545555554433 65 77889987654443221 122 22232234455567666665
Q ss_pred cchH
Q psy15126 287 YYTP 290 (300)
Q Consensus 287 y~A~ 290 (300)
-.+.
T Consensus 347 ~~a~ 350 (433)
T 3eol_A 347 TLAG 350 (433)
T ss_dssp TTHH
T ss_pred CcHH
Confidence 5433
No 47
>3a5f_A Dihydrodipicolinate synthase; TIM barrel, enzyme, amino-acid biosynthesis, cytoplasm, diaminopimelate biosynthesis, lyase; HET: KPI; 1.19A {Clostridium botulinum A} PDB: 3bi8_A* 3ird_A*
Probab=89.33 E-value=2.9 Score=37.74 Aligned_cols=62 Identities=13% Similarity=0.172 Sum_probs=42.5
Q ss_pred hhcCCceeeccCc------ch---HHHHHHHHHhh-CCCCCEEeEecccccHHHHHHHhCCCCCHHHHHHHHHHHHHHcC
Q psy15126 211 VSQGADFLMVKPA------LP---YLDIISEVKSR-HPAYPLFVYQVSGEYAMLAFAAQAGALDLKRALMETLTCLRRGG 280 (300)
Q Consensus 211 a~~GADivmVkPs------mm---~ld~Ir~~~d~-~~~vpi~aY~vSgeY~~~r~Aa~~~~~n~~eal~E~~~~~~r~G 280 (300)
++.|+|-|.|.=+ +. +..+++.+.+. -.++||++= + |-.+.++++..+-.. ++.|
T Consensus 32 i~~Gv~gl~~~GttGE~~~Ls~~Er~~v~~~~~~~~~gr~pvi~G-v-------------g~~~t~~ai~la~~a-~~~G 96 (291)
T 3a5f_A 32 IKSKTDAIIVCGTTGEATTMTETERKETIKFVIDKVNKRIPVIAG-T-------------GSNNTAASIAMSKWA-ESIG 96 (291)
T ss_dssp HHTTCCEEEESSGGGTGGGSCHHHHHHHHHHHHHHHTTSSCEEEE-C-------------CCSSHHHHHHHHHHH-HHTT
T ss_pred HHcCCCEEEECccccChhhCCHHHHHHHHHHHHHHhCCCCcEEEe-C-------------CcccHHHHHHHHHHH-HhcC
Confidence 6889999877433 22 78888888776 346999865 3 234667775555444 4799
Q ss_pred CCEEEec
Q psy15126 281 ADVIISY 287 (300)
Q Consensus 281 AD~Ii~y 287 (300)
||.+++-
T Consensus 97 adavlv~ 103 (291)
T 3a5f_A 97 VDGLLVI 103 (291)
T ss_dssp CSEEEEE
T ss_pred CCEEEEc
Confidence 9999873
No 48
>1mxs_A KDPG aldolase; 2-keto-3-deoxy-6-phosphogluconate aldolase, sulfate, beta-BA lyase; 2.20A {Pseudomonas putida} SCOP: c.1.10.1
Probab=89.01 E-value=2.5 Score=37.30 Aligned_cols=35 Identities=11% Similarity=-0.034 Sum_probs=28.4
Q ss_pred hhcCCceeeccCcch--HHHHHHHHHhhCCCCCEEeE
Q psy15126 211 VSQGADFLMVKPALP--YLDIISEVKSRHPAYPLFVY 245 (300)
Q Consensus 211 a~~GADivmVkPsmm--~ld~Ir~~~d~~~~vpi~aY 245 (300)
.+.|||+|.+=|+-. =++.+++++..+|++|+++=
T Consensus 136 ~~~Gad~vk~FPa~~~~G~~~lk~i~~~~~~ipvvai 172 (225)
T 1mxs_A 136 YALGYRRFKLFPAEISGGVAAIKAFGGPFGDIRFCPT 172 (225)
T ss_dssp HTTTCCEEEETTHHHHTHHHHHHHHHTTTTTCEEEEB
T ss_pred HHCCCCEEEEccCccccCHHHHHHHHhhCCCCeEEEE
Confidence 578999999989633 37888888888889999875
No 49
>1xg4_A Probable methylisocitrate lyase; 2-methylisocitrate lyase/inhibitor complex, isocitrate lyase superfamily; HET: ICT; 1.60A {Escherichia coli} PDB: 1xg3_A* 1mum_A 1oqf_A 1ujq_A 1o5q_A
Probab=88.98 E-value=2.9 Score=38.76 Aligned_cols=43 Identities=21% Similarity=0.394 Sum_probs=33.7
Q ss_pred HHHHHHHHHhhhcccccCCCCCccccchhhhcCCceeeccCcchHHHHHHHHHhhCCCCCEEe
Q psy15126 182 LKRLADISKAFSDAVYVPNHNTDRFQARDVSQGADFLMVKPALPYLDIISEVKSRHPAYPLFV 244 (300)
Q Consensus 182 l~~l~~~a~~~a~~~~~~~~n~~~~~~~Da~~GADivmVkPsmm~ld~Ir~~~d~~~~vpi~a 244 (300)
++.+.+-|+++ .++|||+|++ |+.+-.+.++++.+.. ++|+++
T Consensus 166 l~~ai~ra~ay------------------~eAGAd~i~~-e~~~~~~~~~~i~~~~-~iP~~~ 208 (295)
T 1xg4_A 166 LDAAIERAQAY------------------VEAGAEMLFP-EAITELAMYRQFADAV-QVPILA 208 (295)
T ss_dssp HHHHHHHHHHH------------------HHTTCSEEEE-TTCCSHHHHHHHHHHH-CSCBEE
T ss_pred HHHHHHHHHHH------------------HHcCCCEEEE-eCCCCHHHHHHHHHHc-CCCEEE
Confidence 56667777887 7999999955 4566688899988886 589876
No 50
>1wbh_A KHG/KDPG aldolase; lyase; 1.55A {Escherichia coli} SCOP: c.1.10.1 PDB: 2c0a_A 1wau_A 1eua_A 1eun_A 1fq0_A* 1fwr_A*
Probab=88.98 E-value=3.1 Score=36.30 Aligned_cols=35 Identities=9% Similarity=0.056 Sum_probs=28.7
Q ss_pred hhcCCceeeccCcch--HHHHHHHHHhhCCCCCEEeE
Q psy15126 211 VSQGADFLMVKPALP--YLDIISEVKSRHPAYPLFVY 245 (300)
Q Consensus 211 a~~GADivmVkPsmm--~ld~Ir~~~d~~~~vpi~aY 245 (300)
.+.|||.|.+=|+-. =++.+++++..+|++|+++=
T Consensus 126 ~~~Gad~v~~Fpa~~~gG~~~lk~i~~~~~~ipvvai 162 (214)
T 1wbh_A 126 MDYGLKEFKFFPAEANGGVKALQAIAGPFSQVRFCPT 162 (214)
T ss_dssp HHTTCCEEEETTTTTTTHHHHHHHHHTTCTTCEEEEB
T ss_pred HHCCCCEEEEecCccccCHHHHHHHhhhCCCCeEEEE
Confidence 578999999999633 37888888888888999875
No 51
>3ovp_A Ribulose-phosphate 3-epimerase; iron binding, isomerase; HET: XPE; 1.70A {Homo sapiens} SCOP: c.1.2.0 PDB: 3ovq_A* 3ovr_A* 3qc3_A
Probab=88.82 E-value=1.9 Score=37.99 Aligned_cols=42 Identities=19% Similarity=0.325 Sum_probs=26.6
Q ss_pred HHHHHHHHHhhCCCCCEEeEecccccHHHHHHHhCCCCCHHHHHHHHHHHHHHcCCCEEEec
Q psy15126 226 YLDIISEVKSRHPAYPLFVYQVSGEYAMLAFAAQAGALDLKRALMETLTCLRRGGADVIISY 287 (300)
Q Consensus 226 ~ld~Ir~~~d~~~~vpi~aY~vSgeY~~~r~Aa~~~~~n~~eal~E~~~~~~r~GAD~Ii~y 287 (300)
.++.|+++++..+++||.+= |-+|. |+...+.++|||++++-
T Consensus 156 ~l~ki~~lr~~~~~~~I~Vd---------------GGI~~-----~t~~~~~~aGAd~~VvG 197 (228)
T 3ovp_A 156 MMPKVHWLRTQFPSLDIEVD---------------GGVGP-----DTVHKCAEAGANMIVSG 197 (228)
T ss_dssp GHHHHHHHHHHCTTCEEEEE---------------SSCST-----TTHHHHHHHTCCEEEES
T ss_pred HHHHHHHHHHhcCCCCEEEe---------------CCcCH-----HHHHHHHHcCCCEEEEe
Confidence 46778888877666776432 11232 45555667899988875
No 52
>3ih1_A Methylisocitrate lyase; alpha-beta structure, TIM-barrel, center for structural GENO infectious diseases, csgid; 2.00A {Bacillus anthracis str} PDB: 3kz2_A
Probab=88.74 E-value=3.2 Score=38.77 Aligned_cols=78 Identities=22% Similarity=0.264 Sum_probs=51.3
Q ss_pred HHHHHHHHHhhhcccccCCCCCccccchhhhcCCceeeccCcchHHHHHHHHHhhCCCCCEEeEecccccH-----HHHH
Q psy15126 182 LKRLADISKAFSDAVYVPNHNTDRFQARDVSQGADFLMVKPALPYLDIISEVKSRHPAYPLFVYQVSGEYA-----MLAF 256 (300)
Q Consensus 182 l~~l~~~a~~~a~~~~~~~~n~~~~~~~Da~~GADivmVkPsmm~ld~Ir~~~d~~~~vpi~aY~vSgeY~-----~~r~ 256 (300)
++.+.+-+.++ .++|||+|++ |+.+-.+.++++.++. ++|+++=-+ +|+ ....
T Consensus 174 ~~~ai~Ra~ay------------------~eAGAD~i~~-e~~~~~~~~~~i~~~~-~~P~~~n~~--~~g~tp~~~~~e 231 (305)
T 3ih1_A 174 LDEAIERANAY------------------VKAGADAIFP-EALQSEEEFRLFNSKV-NAPLLANMT--EFGKTPYYSAEE 231 (305)
T ss_dssp HHHHHHHHHHH------------------HHHTCSEEEE-TTCCSHHHHHHHHHHS-CSCBEEECC--TTSSSCCCCHHH
T ss_pred HHHHHHHHHHH------------------HHcCCCEEEE-cCCCCHHHHHHHHHHc-CCCEEEeec--CCCCCCCCCHHH
Confidence 55566667777 7999999965 6666788899998887 589975322 222 2455
Q ss_pred HHhCCC----------CCHHHHHHHHHHHHHHcCC
Q psy15126 257 AAQAGA----------LDLKRALMETLTCLRRGGA 281 (300)
Q Consensus 257 Aa~~~~----------~n~~eal~E~~~~~~r~GA 281 (300)
-.++|+ .-.-.++++++..+++.|-
T Consensus 232 L~~lGv~~v~~~~~~~raa~~a~~~~~~~i~~~g~ 266 (305)
T 3ih1_A 232 FANMGFQMVIYPVTSLRVAAKAYENVFTLIKETGS 266 (305)
T ss_dssp HHHTTCSEEEECSHHHHHHHHHHHHHHHHHHHHSS
T ss_pred HHHcCCCEEEEchHHHHHHHHHHHHHHHHHHhcCC
Confidence 555552 1223567777777776663
No 53
>1rqb_A Transcarboxylase 5S subunit; TIM-barrel, carbamylated lysine, transfera; HET: KCX; 1.90A {Propionibacterium freudenreichii subspshermanii} SCOP: a.5.7.2 c.1.10.5 PDB: 1rqe_A 1rqh_A* 1rr2_A* 1u5j_A* 1s3h_A*
Probab=88.53 E-value=12 Score=37.47 Aligned_cols=47 Identities=21% Similarity=0.309 Sum_probs=31.9
Q ss_pred hHHHHHHHHHhhhcccccCCCCCccccchhhhcCCceeeccCc----ch--HHHHHHHHHhhCC-CCCEEeE
Q psy15126 181 TLKRLADISKAFSDAVYVPNHNTDRFQARDVSQGADFLMVKPA----LP--YLDIISEVKSRHP-AYPLFVY 245 (300)
Q Consensus 181 tl~~l~~~a~~~a~~~~~~~~n~~~~~~~Da~~GADivmVkPs----mm--~ld~Ir~~~d~~~-~vpi~aY 245 (300)
+++.+.+++... .++|||+|-++=. .| .-+.|+.+++.++ ++||-.+
T Consensus 173 ~~e~~~~~a~~l------------------~~~Gad~I~L~DT~G~~~P~~v~~lv~~l~~~~p~~i~I~~H 226 (539)
T 1rqb_A 173 TVEGYVKLAGQL------------------LDMGADSIALKDMAALLKPQPAYDIIKAIKDTYGQKTQINLH 226 (539)
T ss_dssp CHHHHHHHHHHH------------------HHTTCSEEEEEETTCCCCHHHHHHHHHHHHHHHCTTCCEEEE
T ss_pred CHHHHHHHHHHH------------------HHcCCCEEEeCCCCCCcCHHHHHHHHHHHHHhcCCCceEEEE
Confidence 456777776665 6789999855522 22 5677788877776 7887554
No 54
>1o5k_A DHDPS, dihydrodipicolinate synthase; TM1521, structural genomics, J protein structure initiative, joint center for structural G lyase; HET: MCL; 1.80A {Thermotoga maritima} SCOP: c.1.10.1 PDB: 3pb2_A 3pb0_A
Probab=88.36 E-value=2.8 Score=38.24 Aligned_cols=80 Identities=16% Similarity=0.227 Sum_probs=52.2
Q ss_pred ccCCCcccchHhHHHHHHHHHhhhcccccCCCCCccccchhhhcCCceeeccC------cch---HHHHHHHHHhh-CCC
Q psy15126 170 FNEDGSIHYEKTLKRLADISKAFSDAVYVPNHNTDRFQARDVSQGADFLMVKP------ALP---YLDIISEVKSR-HPA 239 (300)
Q Consensus 170 ~~~~g~i~nd~tl~~l~~~a~~~a~~~~~~~~n~~~~~~~Da~~GADivmVkP------smm---~ld~Ir~~~d~-~~~ 239 (300)
|+ ||+|+.+..-+.+-.+ ++.|+|-|.|.= ++. +..+++.+.+. -..
T Consensus 25 f~-dg~iD~~~l~~lv~~l----------------------i~~Gv~gl~v~GtTGE~~~Ls~eEr~~vi~~~~~~~~gr 81 (306)
T 1o5k_A 25 FK-NGELDLESYERLVRYQ----------------------LENGVNALIVLGTTGESPTVNEDEREKLVSRTLEIVDGK 81 (306)
T ss_dssp EE-TTEECHHHHHHHHHHH----------------------HHTTCCEEEESSGGGTGGGCCHHHHHHHHHHHHHHHTTS
T ss_pred cC-CCCcCHHHHHHHHHHH----------------------HHcCCCEEEeCccccchhhCCHHHHHHHHHHHHHHhCCC
Confidence 46 7888877664443333 788999987743 322 78888888776 346
Q ss_pred CCEEeEecccccHHHHHHHhCCCCCHHHHHHHHHHHHHHcCCCEEEec
Q psy15126 240 YPLFVYQVSGEYAMLAFAAQAGALDLKRALMETLTCLRRGGADVIISY 287 (300)
Q Consensus 240 vpi~aY~vSgeY~~~r~Aa~~~~~n~~eal~E~~~~~~r~GAD~Ii~y 287 (300)
+||++= + |-.+.++++..+-... +.|||.+++-
T Consensus 82 vpViaG-v-------------g~~st~~ai~la~~A~-~~Gadavlv~ 114 (306)
T 1o5k_A 82 IPVIVG-A-------------GTNSTEKTLKLVKQAE-KLGANGVLVV 114 (306)
T ss_dssp SCEEEE-C-------------CCSCHHHHHHHHHHHH-HHTCSEEEEE
T ss_pred CeEEEc-C-------------CCccHHHHHHHHHHHH-hcCCCEEEEC
Confidence 999865 3 2235667655444444 6888888773
No 55
>3m5v_A DHDPS, dihydrodipicolinate synthase; TIM barrel, csgid, amino-acid biosynthesis, diaminopimelate biosynthesis, lyase, lysine biosynthesis; HET: MSE; 1.80A {Campylobacter jejuni} SCOP: c.1.10.0 PDB: 3ler_A*
Probab=88.26 E-value=2.6 Score=38.27 Aligned_cols=79 Identities=15% Similarity=0.152 Sum_probs=52.3
Q ss_pred CCCcccchHhHHHHHHHHHhhhcccccCCCCCccccchhhhcCCceeeccCc------ch---HHHHHHHHHhh-CC-CC
Q psy15126 172 EDGSIHYEKTLKRLADISKAFSDAVYVPNHNTDRFQARDVSQGADFLMVKPA------LP---YLDIISEVKSR-HP-AY 240 (300)
Q Consensus 172 ~~g~i~nd~tl~~l~~~a~~~a~~~~~~~~n~~~~~~~Da~~GADivmVkPs------mm---~ld~Ir~~~d~-~~-~v 240 (300)
+||+|+.+..-+.+-.. ++.|+|-|.|.=+ +. +..+++.+.+. -. ++
T Consensus 21 ~dg~iD~~~l~~lv~~l----------------------i~~Gv~gl~v~GttGE~~~Ls~~Er~~v~~~~~~~~~g~rv 78 (301)
T 3m5v_A 21 KNGKVDEQSYARLIKRQ----------------------IENGIDAVVPVGTTGESATLTHEEHRTCIEIAVETCKGTKV 78 (301)
T ss_dssp ETTEECHHHHHHHHHHH----------------------HHTTCCEEECSSTTTTGGGSCHHHHHHHHHHHHHHHTTSSC
T ss_pred CCCCCCHHHHHHHHHHH----------------------HHcCCCEEEECccccChhhCCHHHHHHHHHHHHHHhCCCCC
Confidence 57888877664443333 7899999877533 22 78888888876 33 69
Q ss_pred CEEeEecccccHHHHHHHhCCCCCHHHHHHHHHHHHHHcCCCEEEec
Q psy15126 241 PLFVYQVSGEYAMLAFAAQAGALDLKRALMETLTCLRRGGADVIISY 287 (300)
Q Consensus 241 pi~aY~vSgeY~~~r~Aa~~~~~n~~eal~E~~~~~~r~GAD~Ii~y 287 (300)
||++- + |-.+.++++..+-.. ++.|||.+++-
T Consensus 79 pviaG-v-------------g~~~t~~ai~la~~a-~~~Gadavlv~ 110 (301)
T 3m5v_A 79 KVLAG-A-------------GSNATHEAVGLAKFA-KEHGADGILSV 110 (301)
T ss_dssp EEEEE-C-------------CCSSHHHHHHHHHHH-HHTTCSEEEEE
T ss_pred eEEEe-C-------------CCCCHHHHHHHHHHH-HHcCCCEEEEc
Confidence 99984 4 223667775554444 47899988874
No 56
>3inp_A D-ribulose-phosphate 3-epimerase; IDP02542, isomerase, struc genomics, center for structural genomics of infectious DISE csgid; 2.05A {Francisella tularensis subsp}
Probab=88.23 E-value=4.9 Score=36.20 Aligned_cols=61 Identities=13% Similarity=0.106 Sum_probs=36.4
Q ss_pred HHHHHHHHhCCCcEEEeeecCCCCCCCCcceeeCCCCceecHHhHHHHHHHHHHHHHcCCCccccCCCCcchHHHHHHHH
Q psy15126 20 QVIPMIRKQFPSLTIACDVCLCGYTSHGHCAIFNEDGSIHYEKTLKRLADISKAFSDAGAHIVAPSDMMDNRIHAIKQSL 99 (300)
Q Consensus 20 ~~i~~ik~~~p~l~i~~Dvclc~yt~hGHcgi~~~~g~i~nd~Tl~~l~~~A~~~A~aGad~vAPSdmMDgrv~air~aL 99 (300)
+.++.||+.+|++.+-++.-. .+. +. ....++++|||+|..-.-....+....+..
T Consensus 75 ~~v~~lr~~~p~~~ldvHLmv------------~~p---------~~---~i~~~~~aGAd~itvH~Ea~~~~~~~i~~i 130 (246)
T 3inp_A 75 MVLKALRDYGITAGMDVHLMV------------KPV---------DA---LIESFAKAGATSIVFHPEASEHIDRSLQLI 130 (246)
T ss_dssp HHHHHHHHHTCCSCEEEEEEC------------SSC---------HH---HHHHHHHHTCSEEEECGGGCSCHHHHHHHH
T ss_pred HHHHHHHHhCCCCeEEEEEee------------CCH---------HH---HHHHHHHcCCCEEEEccccchhHHHHHHHH
Confidence 678888888877665433331 111 22 234578999999987433333455555556
Q ss_pred hhCCC
Q psy15126 100 FTSRQ 104 (300)
Q Consensus 100 d~~g~ 104 (300)
.+.|.
T Consensus 131 r~~G~ 135 (246)
T 3inp_A 131 KSFGI 135 (246)
T ss_dssp HTTTS
T ss_pred HHcCC
Confidence 66676
No 57
>2ehh_A DHDPS, dihydrodipicolinate synthase; structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.90A {Aquifex aeolicus}
Probab=88.02 E-value=3 Score=37.75 Aligned_cols=62 Identities=21% Similarity=0.166 Sum_probs=41.9
Q ss_pred hhcCCceeeccC------cch---HHHHHHHHHhh-CCCCCEEeEecccccHHHHHHHhCCCCCHHHHHHHHHHHHHHcC
Q psy15126 211 VSQGADFLMVKP------ALP---YLDIISEVKSR-HPAYPLFVYQVSGEYAMLAFAAQAGALDLKRALMETLTCLRRGG 280 (300)
Q Consensus 211 a~~GADivmVkP------smm---~ld~Ir~~~d~-~~~vpi~aY~vSgeY~~~r~Aa~~~~~n~~eal~E~~~~~~r~G 280 (300)
++.|+|-|.|.= ++. +..+++.+.+. -..+||++= + |-.+.++++..+-... +.|
T Consensus 31 i~~Gv~gl~~~GttGE~~~Ls~~Er~~v~~~~~~~~~grvpviaG-v-------------g~~~t~~ai~la~~A~-~~G 95 (294)
T 2ehh_A 31 VDNGTDAILVCGTTGESPTLTFEEHEKVIEFAVKRAAGRIKVIAG-T-------------GGNATHEAVHLTAHAK-EVG 95 (294)
T ss_dssp HTTTCCEEEESSTTTTGGGSCHHHHHHHHHHHHHHHTTSSEEEEE-C-------------CCSCHHHHHHHHHHHH-HTT
T ss_pred HHCCCCEEEECccccChhhCCHHHHHHHHHHHHHHhCCCCcEEEe-c-------------CCCCHHHHHHHHHHHH-hcC
Confidence 788999887743 322 78888888876 346999865 3 2246677755554444 689
Q ss_pred CCEEEec
Q psy15126 281 ADVIISY 287 (300)
Q Consensus 281 AD~Ii~y 287 (300)
||.+++-
T Consensus 96 adavlv~ 102 (294)
T 2ehh_A 96 ADGALVV 102 (294)
T ss_dssp CSEEEEE
T ss_pred CCEEEEC
Confidence 9988873
No 58
>1m3u_A 3-methyl-2-oxobutanoate hydroxymethyltransferase; beta-alpha-barrel, TIM-barrel, ketopantoate, selenomethionin decamer; HET: KPL; 1.80A {Escherichia coli} SCOP: c.1.12.8
Probab=87.81 E-value=7.3 Score=35.86 Aligned_cols=137 Identities=15% Similarity=0.235 Sum_probs=82.2
Q ss_pred HHHHHHHHHhCCCcEEEeeecCCCCCCCCcceeeCCCCceecHHhHHHHHHHHHHHHHcCCCccccCCC--CcchHHHHH
Q psy15126 19 FQVIPMIRKQFPSLTIACDVCLCGYTSHGHCAIFNEDGSIHYEKTLKRLADISKAFSDAGAHIVAPSDM--MDNRIHAIK 96 (300)
Q Consensus 19 ~~~i~~ik~~~p~l~i~~Dvclc~yt~hGHcgi~~~~g~i~nd~Tl~~l~~~A~~~A~aGad~vAPSdm--MDgrv~air 96 (300)
..-.+.|++..+...|++|. ||-+ . . |.++.++-|..+.++||+.|-.-+- |-.+|.++
T Consensus 66 i~h~~aV~r~~~~~~vvaD~---pfgs------------y--~-~~~~a~~~a~rl~kaGa~aVklEgg~e~~~~I~al- 126 (264)
T 1m3u_A 66 AYHTAAVRRGAPNCLLLADL---PFMA------------Y--A-TPEQAFENAATVMRAGANMVKIEGGEWLVETVQML- 126 (264)
T ss_dssp HHHHHHHHHHCTTSEEEEEC---CTTS------------S--S-SHHHHHHHHHHHHHTTCSEEECCCSGGGHHHHHHH-
T ss_pred HHHHHHHHhhCCCCcEEEEC---CCCC------------c--C-CHHHHHHHHHHHHHcCCCEEEECCcHHHHHHHHHH-
Confidence 34467788888887777994 4421 1 1 5577888888899999999988654 33334333
Q ss_pred HHHhhCCCCCCcccccchhhhhcccchhhhhhhcCCCCCCCcceeeCCCCCCceEEEEeecccCCCCCCccccccCCCcc
Q psy15126 97 QSLFTSRQSSTTGLLSYSAKFCSAFYGPFREAAGSAPTFGDRSCYQLPCGSKGLAIRAAVCLCGYTSHGHCAIFNEDGSI 176 (300)
Q Consensus 97 ~aLd~~g~~~~v~ImsysaK~aS~~YGPfRda~gS~~~~gdr~~yQ~~~~~~~~ai~~dvclc~yt~hGHcgi~~~~g~i 176 (300)
.++|. ++|.+ +|=+|+. ..++. +|--- |
T Consensus 127 ---~~agi----pV~gH---------------iGLtPq~----v~~~g---------------gf~v~---------g-- 154 (264)
T 1m3u_A 127 ---TERAV----PVCGH---------------LGLTPQS----VNIFG---------------GYKVQ---------G-- 154 (264)
T ss_dssp ---HHTTC----CEEEE---------------EESCGGG----HHHHT---------------SSCCC---------C--
T ss_pred ---HHCCC----CeEee---------------ecCCcee----ecccC---------------CeEEE---------e--
Confidence 34565 34433 1222221 00000 00000 1
Q ss_pred cchHhHHHHHHHHHhhhcccccCCCCCccccchhhhcCCceeeccCcchHHHHHHHHHhhCCCCCEEeEec
Q psy15126 177 HYEKTLKRLADISKAFSDAVYVPNHNTDRFQARDVSQGADFLMVKPALPYLDIISEVKSRHPAYPLFVYQV 247 (300)
Q Consensus 177 ~nd~tl~~l~~~a~~~a~~~~~~~~n~~~~~~~Da~~GADivmVkPsmm~ld~Ir~~~d~~~~vpi~aY~v 247 (300)
..|...+.+.+-|+++ .++|||+|. -+..+ -+.++++-++. .+|+.....
T Consensus 155 rt~~~a~~~i~rA~a~------------------~eAGA~~iv-lE~vp-~~~a~~it~~l-~iP~igIGa 204 (264)
T 1m3u_A 155 RGDEAGDQLLSDALAL------------------EAAGAQLLV-LECVP-VELAKRITEAL-AIPVIGIGA 204 (264)
T ss_dssp CSHHHHHHHHHHHHHH------------------HHHTCCEEE-EESCC-HHHHHHHHHHC-SSCEEEESS
T ss_pred CCHHHHHHHHHHHHHH------------------HHCCCcEEE-EecCC-HHHHHHHHHhC-CCCEEEeCC
Confidence 1234457777888887 799999983 34444 36778888876 699998765
No 59
>3lg3_A Isocitrate lyase; conserved, CD, proteomics evidence (cytopl periplasmic), drug target functions; 1.40A {Yersinia pestis} SCOP: c.1.12.7 PDB: 1igw_A
Probab=87.80 E-value=10 Score=37.40 Aligned_cols=69 Identities=16% Similarity=0.170 Sum_probs=39.7
Q ss_pred hhcCCceeeccCcchHHHHHHHHHhh----CCCCCEEeEecccccHHHHHHHhCCCCCHHHHHHHHHHHHHHcCCCEEEe
Q psy15126 211 VSQGADFLMVKPALPYLDIISEVKSR----HPAYPLFVYQVSGEYAMLAFAAQAGALDLKRALMETLTCLRRGGADVIIS 286 (300)
Q Consensus 211 a~~GADivmVkPsmm~ld~Ir~~~d~----~~~vpi~aY~vSgeY~~~r~Aa~~~~~n~~eal~E~~~~~~r~GAD~Ii~ 286 (300)
++ |||+|++.|..+-++.|++..+. +| ..+++|.-|-.|.=-+. ++ ++-+.....++.+.|..+++.
T Consensus 281 ~~-GAD~if~E~~~~~~~ei~~f~~~v~~~~P-~~~La~~~sPsfnw~~~------~~-d~~~~~f~~eLa~lG~~~v~~ 351 (435)
T 3lg3_A 281 AP-YADLVWCETSTPDLALAKRFADAVHAQFP-GKLLAYNCSPSFNWKKN------LT-DQQIASFQDELSAMGYKYQFI 351 (435)
T ss_dssp GG-GCSEEEECCSSCCHHHHHHHHHHHHHHST-TCEEEEECCSSSCHHHH------SC-HHHHHHHHHHHHHTTEEEEEE
T ss_pred Hc-cCCEEEecCCCCCHHHHHHHHHHhccccC-CeEEEeCCCCCcccccc------CC-HHHHHHHHHHHHHcCCcEEEe
Confidence 46 99999997776555555554433 66 67888987644421110 11 233344445555667766655
Q ss_pred cc
Q psy15126 287 YY 288 (300)
Q Consensus 287 y~ 288 (300)
--
T Consensus 352 ~l 353 (435)
T 3lg3_A 352 TL 353 (435)
T ss_dssp TT
T ss_pred Cc
Confidence 43
No 60
>2yxg_A DHDPS, dihydrodipicolinate synthase; MJ0244, TIM beta/alpha-barrel fold, structural genomics, NPPSFA; 2.20A {Methanocaldococcus jannaschii DSM2661}
Probab=87.60 E-value=3.1 Score=37.53 Aligned_cols=80 Identities=14% Similarity=0.223 Sum_probs=52.0
Q ss_pred ccCCCcccchHhHHHHHHHHHhhhcccccCCCCCccccchhhhcCCceeeccCc------ch---HHHHHHHHHhh-CCC
Q psy15126 170 FNEDGSIHYEKTLKRLADISKAFSDAVYVPNHNTDRFQARDVSQGADFLMVKPA------LP---YLDIISEVKSR-HPA 239 (300)
Q Consensus 170 ~~~~g~i~nd~tl~~l~~~a~~~a~~~~~~~~n~~~~~~~Da~~GADivmVkPs------mm---~ld~Ir~~~d~-~~~ 239 (300)
|+ ||+||.+..-+.+-.. ++.|+|-|.|.=+ +. +..+++.+.+. -..
T Consensus 13 f~-dg~iD~~~l~~lv~~l----------------------i~~Gv~gl~~~GttGE~~~Ls~~Er~~v~~~~~~~~~gr 69 (289)
T 2yxg_A 13 FK-NKEVDFDGLEENINFL----------------------IENGVSGIVAVGTTGESPTLSHEEHKKVIEKVVDVVNGR 69 (289)
T ss_dssp EE-TTEECHHHHHHHHHHH----------------------HHTTCSEEEESSTTTTGGGSCHHHHHHHHHHHHHHHTTS
T ss_pred cC-CCCcCHHHHHHHHHHH----------------------HHCCCCEEEECccccChhhCCHHHHHHHHHHHHHHhCCC
Confidence 46 7888777664443333 7889999877533 22 78888888775 346
Q ss_pred CCEEeEecccccHHHHHHHhCCCCCHHHHHHHHHHHHHHcCCCEEEec
Q psy15126 240 YPLFVYQVSGEYAMLAFAAQAGALDLKRALMETLTCLRRGGADVIISY 287 (300)
Q Consensus 240 vpi~aY~vSgeY~~~r~Aa~~~~~n~~eal~E~~~~~~r~GAD~Ii~y 287 (300)
+||++- + |-.+.++++..+-.. ++.|||.+++-
T Consensus 70 ~pviaG-v-------------g~~~t~~ai~la~~a-~~~Gadavlv~ 102 (289)
T 2yxg_A 70 VQVIAG-A-------------GSNCTEEAIELSVFA-EDVGADAVLSI 102 (289)
T ss_dssp SEEEEE-C-------------CCSSHHHHHHHHHHH-HHHTCSEEEEE
T ss_pred CcEEEe-C-------------CCCCHHHHHHHHHHH-HhcCCCEEEEC
Confidence 999865 3 223566765544444 46899988873
No 61
>3vnd_A TSA, tryptophan synthase alpha chain; psychrophilic enzyme, cold adaptation; HET: PE8; 2.60A {Shewanella frigidimarina}
Probab=87.33 E-value=1.2 Score=40.47 Aligned_cols=34 Identities=41% Similarity=0.752 Sum_probs=23.7
Q ss_pred hhcCCceeecc-C-cch-----------------------HHHHHHHHHhhCCCCCEEe
Q psy15126 211 VSQGADFLMVK-P-ALP-----------------------YLDIISEVKSRHPAYPLFV 244 (300)
Q Consensus 211 a~~GADivmVk-P-smm-----------------------~ld~Ir~~~d~~~~vpi~a 244 (300)
.++|||+|-+. | |.| .++.++++++.++++||.-
T Consensus 42 ~~~GaD~iElgiPfSDP~aDGp~Iq~a~~~AL~~G~~~~~~~~~v~~ir~~~~~~Pivl 100 (267)
T 3vnd_A 42 VDNGADALELGFPFSDPLADGPVIQGANLRSLAAGTTSSDCFDIITKVRAQHPDMPIGL 100 (267)
T ss_dssp HHTTCSSEEEECCCSCCTTCCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCCEEE
T ss_pred HHcCCCEEEECCCCCCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCEEE
Confidence 68999998665 1 221 2688888888766888744
No 62
>4fo4_A Inosine 5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.03A {Vibrio cholerae o1 biovar el tor} PDB: 4ff0_A* 4hlv_A* 4fez_A
Probab=87.23 E-value=1.3 Score=42.00 Aligned_cols=56 Identities=21% Similarity=0.269 Sum_probs=40.7
Q ss_pred hhcCCceeec--cCc--chHHHHHHHHHhhCCCCCEEeEecccccHHHHHHHhCCCCCHHHHHHHHHHHHHHcCCCEEEe
Q psy15126 211 VSQGADFLMV--KPA--LPYLDIISEVKSRHPAYPLFVYQVSGEYAMLAFAAQAGALDLKRALMETLTCLRRGGADVIIS 286 (300)
Q Consensus 211 a~~GADivmV--kPs--mm~ld~Ir~~~d~~~~vpi~aY~vSgeY~~~r~Aa~~~~~n~~eal~E~~~~~~r~GAD~Ii~ 286 (300)
+++|+|+|.| ... -..++.|+++++.+|++||++-++ .+.++| . .+.++|||.|.+
T Consensus 117 ieaGvd~I~idta~G~~~~~~~~I~~ik~~~p~v~Vi~G~v---------------~t~e~A----~-~a~~aGAD~I~v 176 (366)
T 4fo4_A 117 VEAGVDVLLIDSSHGHSEGVLQRIRETRAAYPHLEIIGGNV---------------ATAEGA----R-ALIEAGVSAVKV 176 (366)
T ss_dssp HHTTCSEEEEECSCTTSHHHHHHHHHHHHHCTTCEEEEEEE---------------CSHHHH----H-HHHHHTCSEEEE
T ss_pred HhCCCCEEEEeCCCCCCHHHHHHHHHHHHhcCCCceEeeee---------------CCHHHH----H-HHHHcCCCEEEE
Confidence 7899999976 322 347899999999999999988655 233322 2 333689999998
No 63
>3b4u_A Dihydrodipicolinate synthase; structural genomics, PSI-2, MC protein structure initiative, midwest center for structural genomics; 1.20A {Agrobacterium tumefaciens str}
Probab=87.11 E-value=6.6 Score=35.53 Aligned_cols=37 Identities=24% Similarity=0.389 Sum_probs=26.8
Q ss_pred hhcCCceeeccCc---c-h----HHHHHHHHHhhCC--CCCEEeEec
Q psy15126 211 VSQGADFLMVKPA---L-P----YLDIISEVKSRHP--AYPLFVYQV 247 (300)
Q Consensus 211 a~~GADivmVkPs---m-m----~ld~Ir~~~d~~~--~vpi~aY~v 247 (300)
.+.|||.+||-|- - + .++..+++.+..| ++||+-|++
T Consensus 95 ~~~Gadavlv~~P~y~~~~s~~~l~~~f~~va~a~p~~~lPiilYn~ 141 (294)
T 3b4u_A 95 LNAGARNILLAPPSYFKNVSDDGLFAWFSAVFSKIGKDARDILVYNI 141 (294)
T ss_dssp HHTTCSEEEECCCCSSCSCCHHHHHHHHHHHHHHHCTTCCCEEEEEC
T ss_pred HhcCCCEEEEcCCcCCCCCCHHHHHHHHHHHHHhcCCCCCcEEEEEC
Confidence 4689999988543 1 2 4566667777655 799999997
No 64
>2wkj_A N-acetylneuraminate lyase; directed evolution, sialic acid mimetics, aldolase, S base, carbohydrate metabolism, N-acetylneuraminic acid LYAS; HET: KPI PYR; 1.45A {Escherichia coli} PDB: 2wnq_A 2xfw_A* 2wpb_A* 2wnz_A* 2ygy_A* 2wo5_A* 2wnn_A* 3lbm_A 3lbc_A 3lcf_A 3lcl_A 3lcg_A 3lch_A 3lci_A 1hl2_A 1fdy_A 1fdz_A 1nal_1 3lcx_A 3lcw_A
Probab=87.04 E-value=4.5 Score=36.87 Aligned_cols=37 Identities=16% Similarity=0.202 Sum_probs=25.8
Q ss_pred hhcCCceeeccCc-c--h----HHHHHHHHHhhCCCCCEEeEec
Q psy15126 211 VSQGADFLMVKPA-L--P----YLDIISEVKSRHPAYPLFVYQV 247 (300)
Q Consensus 211 a~~GADivmVkPs-m--m----~ld~Ir~~~d~~~~vpi~aY~v 247 (300)
.+.|||.+||-|- . + .+...+++.+..+++||+-|++
T Consensus 103 ~~~Gadavlv~~P~y~~~s~~~l~~~f~~va~a~~~lPiilYn~ 146 (303)
T 2wkj_A 103 KRYGFDAVSAVTPFYYPFSFEEHCDHYRAIIDSADGLPMVVYNI 146 (303)
T ss_dssp HHHTCSEEEEECCCSSCCCHHHHHHHHHHHHHHHTTCCEEEEEC
T ss_pred HhCCCCEEEecCCCCCCCCHHHHHHHHHHHHHhCCCCCEEEEeC
Confidence 4679999887543 1 1 4566666666653499999997
No 65
>2nx9_A Oxaloacetate decarboxylase 2, subunit alpha; carboxyltransferase structure, B enzymes, Zn2+ binding site, TIM-barrel fold, lyase; 1.70A {Vibrio cholerae}
Probab=86.98 E-value=22 Score=34.78 Aligned_cols=46 Identities=20% Similarity=0.353 Sum_probs=31.5
Q ss_pred hHHHHHHHHHhhhcccccCCCCCccccchhhhcCCceeeccCc----ch--HHHHHHHHHhhCCCCCEEeE
Q psy15126 181 TLKRLADISKAFSDAVYVPNHNTDRFQARDVSQGADFLMVKPA----LP--YLDIISEVKSRHPAYPLFVY 245 (300)
Q Consensus 181 tl~~l~~~a~~~a~~~~~~~~n~~~~~~~Da~~GADivmVkPs----mm--~ld~Ir~~~d~~~~vpi~aY 245 (300)
+++.+.+.+... .++|||.|-++=. .| .-+.|+.+++++ ++||-.+
T Consensus 156 ~~e~~~~~a~~l------------------~~~Gad~I~l~DT~G~~~P~~v~~lv~~l~~~~-~~~i~~H 207 (464)
T 2nx9_A 156 NLQTWVDVAQQL------------------AELGVDSIALKDMAGILTPYAAEELVSTLKKQV-DVELHLH 207 (464)
T ss_dssp CHHHHHHHHHHH------------------HHTTCSEEEEEETTSCCCHHHHHHHHHHHHHHC-CSCEEEE
T ss_pred CHHHHHHHHHHH------------------HHCCCCEEEEcCCCCCcCHHHHHHHHHHHHHhc-CCeEEEE
Confidence 456777777665 6899999966522 22 467778888777 6887554
No 66
>1xky_A Dihydrodipicolinate synthase; TIM barrel, , lysine biosynthesis;spine, lyase; 1.94A {Bacillus anthracis} SCOP: c.1.10.1 PDB: 1xl9_A 3hij_A*
Probab=86.87 E-value=6.9 Score=35.58 Aligned_cols=36 Identities=19% Similarity=0.457 Sum_probs=26.3
Q ss_pred hhcCCceeeccCc-c--h----HHHHHHHHHhhCCCCCEEeEec
Q psy15126 211 VSQGADFLMVKPA-L--P----YLDIISEVKSRHPAYPLFVYQV 247 (300)
Q Consensus 211 a~~GADivmVkPs-m--m----~ld~Ir~~~d~~~~vpi~aY~v 247 (300)
.+.|||.+||-|- . + .+...+++.+.. ++||+-|++
T Consensus 104 ~~~Gadavlv~~P~y~~~s~~~l~~~f~~va~a~-~lPiilYn~ 146 (301)
T 1xky_A 104 TEVGVDAVMLVAPYYNKPSQEGMYQHFKAIAEST-PLPVMLYNV 146 (301)
T ss_dssp HHTTCSEEEEECCCSSCCCHHHHHHHHHHHHHTC-SSCEEEEEC
T ss_pred HhcCCCEEEEcCCCCCCCCHHHHHHHHHHHHHhc-CCCEEEEeC
Confidence 4689999887543 1 1 466667777765 799999998
No 67
>1f8m_A Isocitrate lyase, ICL; alpha-beta barrel, helix-swapping, closed conformation, bromopyuvate modification, structural genomics; 1.80A {Mycobacterium tuberculosis H37RV} SCOP: c.1.12.7 PDB: 1f61_A 1f8i_A
Probab=86.82 E-value=7.3 Score=38.29 Aligned_cols=40 Identities=18% Similarity=0.350 Sum_probs=25.6
Q ss_pred hhcCCceeeccCcchHHHHHHHHHhh----CCCCCEEeEecccccH
Q psy15126 211 VSQGADFLMVKPALPYLDIISEVKSR----HPAYPLFVYQVSGEYA 252 (300)
Q Consensus 211 a~~GADivmVkPsmm~ld~Ir~~~d~----~~~vpi~aY~vSgeY~ 252 (300)
++ |||+|++.++.+-++.|++..+. +|.. +++|..|-.|.
T Consensus 277 a~-gAD~if~e~~~~~~eei~~f~~~v~~~~P~~-~La~n~sPsf~ 320 (429)
T 1f8m_A 277 AP-FADLIWMETGTPDLEAARQFSEAVKAEYPDQ-MLAYNCSPSFN 320 (429)
T ss_dssp GG-GCSEEEECCSSCCHHHHHHHHHHHHTTCTTC-EEEEECCTTSC
T ss_pred Hh-cCCEEEeCCCCCCHHHHHHHHHHhcccCCCc-eeecCCCCCCC
Confidence 45 99999987655655666665554 3432 67897754443
No 68
>1oy0_A Ketopantoate hydroxymethyltransferase; domain swapping, structural genomics, PSI, protein structure initiative; 2.80A {Mycobacterium tuberculosis} SCOP: c.1.12.8
Probab=86.65 E-value=20 Score=33.33 Aligned_cols=166 Identities=14% Similarity=0.197 Sum_probs=92.7
Q ss_pred HHHHHHHHHhCCCcEEEeeecCCCCCCCCcceeeCCCCceecHHhHHHHHHHHHHHHH-cCCCccccCCC--CcchHHHH
Q psy15126 19 FQVIPMIRKQFPSLTIACDVCLCGYTSHGHCAIFNEDGSIHYEKTLKRLADISKAFSD-AGAHIVAPSDM--MDNRIHAI 95 (300)
Q Consensus 19 ~~~i~~ik~~~p~l~i~~Dvclc~yt~hGHcgi~~~~g~i~nd~Tl~~l~~~A~~~A~-aGad~vAPSdm--MDgrv~ai 95 (300)
..-.+.|.+..+...|++|.=.-+|. .|.++.++-+....+ +||+.|-.-+- |-.+|.++
T Consensus 83 i~h~~aV~r~~~~~~vvaD~pfgsy~-----------------~s~~~a~~na~rl~~eaGa~aVklEdg~e~~~~I~al 145 (281)
T 1oy0_A 83 IPLVRGVVRGAPHALVVADLPFGSYE-----------------AGPTAALAAATRFLKDGGAHAVKLEGGERVAEQIACL 145 (281)
T ss_dssp HHHHHHHHHHCTTSEEEEECCTTSST-----------------TCHHHHHHHHHHHHHTTCCSEEEEEBSGGGHHHHHHH
T ss_pred HHHHHHHHhcCCCCeEEEECCCCccc-----------------CCHHHHHHHHHHHHHHhCCeEEEECCcHHHHHHHHHH
Confidence 34567788888887788997544441 245666666666666 99999988553 44444444
Q ss_pred HHHHhhCCCCCCcccccchhhhhcccchhhhhhhcCCCCCCCcceeeCCCCCCceEEEEeecccCCCCCCccccccCCCc
Q psy15126 96 KQSLFTSRQSSTTGLLSYSAKFCSAFYGPFREAAGSAPTFGDRSCYQLPCGSKGLAIRAAVCLCGYTSHGHCAIFNEDGS 175 (300)
Q Consensus 96 r~aLd~~g~~~~v~ImsysaK~aS~~YGPfRda~gS~~~~gdr~~yQ~~~~~~~~ai~~dvclc~yt~hGHcgi~~~~g~ 175 (300)
. ++|. ++|.+ +|=+|+. ..++ . +|.-- |+
T Consensus 146 ~----~agI----pV~gH---------------iGLtPqs----v~~~----g-----------gf~v~---------gr 174 (281)
T 1oy0_A 146 T----AAGI----PVMAH---------------IGFTPQS----VNTL----G-----------GFRVQ---------GR 174 (281)
T ss_dssp H----HHTC----CEEEE---------------EECCC------------------------------------------
T ss_pred H----HCCC----CEEee---------------ecCCcce----eccc----C-----------CeEEE---------eC
Confidence 3 3455 34433 2223321 0000 0 00000 11
Q ss_pred ccchHhHHHHHHHHHhhhcccccCCCCCccccchhhhcCCceeeccCcchHHHHHHHHHhhCCCCCEEeEec----cccc
Q psy15126 176 IHYEKTLKRLADISKAFSDAVYVPNHNTDRFQARDVSQGADFLMVKPALPYLDIISEVKSRHPAYPLFVYQV----SGEY 251 (300)
Q Consensus 176 i~nd~tl~~l~~~a~~~a~~~~~~~~n~~~~~~~Da~~GADivmVkPsmm~ld~Ir~~~d~~~~vpi~aY~v----SgeY 251 (300)
.| ..+.+.+-|+++ .++|||+|.+ +..+ -+.++++-++. .+|+..... +|-+
T Consensus 175 --t~-~a~~~i~rA~a~------------------~eAGA~~ivl-E~vp-~~~a~~it~~l-~iP~igIGaG~~~dgQv 230 (281)
T 1oy0_A 175 --GD-AAEQTIADAIAV------------------AEAGAFAVVM-EMVP-AELATQITGKL-TIPTVGIGAGPNCDGQV 230 (281)
T ss_dssp --CH-HHHHHHHHHHHH------------------HHHTCSEEEE-ESCC-HHHHHHHHHHC-SSCEEEESSCSCSSEEE
T ss_pred --cH-HHHHHHHHHHHH------------------HHcCCcEEEE-ecCC-HHHHHHHHHhC-CCCEEEeCCCCCCCcce
Confidence 12 456777778887 7999999843 4444 36778888876 699998765 3322
Q ss_pred HHHHHHH----------hCCCCCHHHHHHHHHHHH
Q psy15126 252 AMLAFAA----------QAGALDLKRALMETLTCL 276 (300)
Q Consensus 252 ~~~r~Aa----------~~~~~n~~eal~E~~~~~ 276 (300)
=-+.+.. -..+.|..+.+.+++...
T Consensus 231 LV~~D~lG~~~~~~pkf~k~y~~~~~~~~~a~~~y 265 (281)
T 1oy0_A 231 LVWQDMAGFSGAKTARFVKRYADVGGELRRAAMQY 265 (281)
T ss_dssp ECHHHHTTCSCSCCCTTCCCCCCHHHHHHHHHHHH
T ss_pred eeHhhhcCCCCCCCCCchhhhhhhHHHHHHHHHHH
Confidence 2222222 134677766666655544
No 69
>3h5d_A DHDPS, dihydrodipicolinate synthase; lysine biosynthesis, amino-ACI biosynthesis, schiff base, cytoplasm, diaminopimelate biosy lyase; HET: MES; 1.99A {Streptococcus pneumoniae}
Probab=86.62 E-value=5.5 Score=36.52 Aligned_cols=81 Identities=20% Similarity=0.332 Sum_probs=53.2
Q ss_pred ccCCCcccchHhHHHHHHHHHhhhcccccCCCCCccccchhhhcCCceeeccCc------ch---HHHHHHHHHhh-CCC
Q psy15126 170 FNEDGSIHYEKTLKRLADISKAFSDAVYVPNHNTDRFQARDVSQGADFLMVKPA------LP---YLDIISEVKSR-HPA 239 (300)
Q Consensus 170 ~~~~g~i~nd~tl~~l~~~a~~~a~~~~~~~~n~~~~~~~Da~~GADivmVkPs------mm---~ld~Ir~~~d~-~~~ 239 (300)
|++||+|+.+..-+.+-.. ++.|+|-|.|.=+ +. +..+++.+.+. -.+
T Consensus 19 f~~dg~iD~~~l~~lv~~l----------------------i~~Gv~Gl~v~GtTGE~~~Ls~~Er~~v~~~~~~~~~gr 76 (311)
T 3h5d_A 19 FHEDGSINFDAIPALIEHL----------------------LAHHTDGILLAGTTAESPTLTHDEELELFAAVQKVVNGR 76 (311)
T ss_dssp BCTTSSBCTTHHHHHHHHH----------------------HHTTCCCEEESSTTTTGGGSCHHHHHHHHHHHHHHSCSS
T ss_pred CCCCCCcCHHHHHHHHHHH----------------------HHcCCCEEEECccccChhhCCHHHHHHHHHHHHHHhCCC
Confidence 4677888887764443333 7899998866543 11 78888888876 457
Q ss_pred CCEEeEecccccHHHHHHHhCCCCCHHHHHHHHHHHHHHcCC-CEEEec
Q psy15126 240 YPLFVYQVSGEYAMLAFAAQAGALDLKRALMETLTCLRRGGA-DVIISY 287 (300)
Q Consensus 240 vpi~aY~vSgeY~~~r~Aa~~~~~n~~eal~E~~~~~~r~GA-D~Ii~y 287 (300)
+||++= + |-.+.++++..+ +..++.|| |.+|+-
T Consensus 77 vpViaG-v-------------g~~~t~~ai~la-~~A~~~Ga~davlv~ 110 (311)
T 3h5d_A 77 VPLIAG-V-------------GTNDTRDSIEFV-KEVAEFGGFAAGLAI 110 (311)
T ss_dssp SCEEEE-C-------------CCSSHHHHHHHH-HHHHHSCCCSEEEEE
T ss_pred CcEEEe-C-------------CCcCHHHHHHHH-HHHHhcCCCcEEEEc
Confidence 999984 4 223566665444 44446786 877764
No 70
>2vc6_A MOSA, dihydrodipicolinate synthase; DHDPS, TIM barrel, schiff base, lyase; HET: MCL; 1.95A {Sinorhizobium meliloti}
Probab=86.57 E-value=4 Score=36.86 Aligned_cols=79 Identities=14% Similarity=0.079 Sum_probs=51.3
Q ss_pred CCCcccchHhHHHHHHHHHhhhcccccCCCCCccccchhhhcCCceeeccCc------ch---HHHHHHHHHhh-CCCCC
Q psy15126 172 EDGSIHYEKTLKRLADISKAFSDAVYVPNHNTDRFQARDVSQGADFLMVKPA------LP---YLDIISEVKSR-HPAYP 241 (300)
Q Consensus 172 ~~g~i~nd~tl~~l~~~a~~~a~~~~~~~~n~~~~~~~Da~~GADivmVkPs------mm---~ld~Ir~~~d~-~~~vp 241 (300)
+||+||.+..-+.+-.+ ++.|+|-|.|.=+ +. +..+++.+.+. -..+|
T Consensus 14 ~dg~iD~~~l~~lv~~l----------------------i~~Gv~gl~~~GttGE~~~Ls~~Er~~v~~~~~~~~~gr~p 71 (292)
T 2vc6_A 14 ADDRIDEVALHDLVEWQ----------------------IEEGSFGLVPCGTTGESPTLSKSEHEQVVEITIKTANGRVP 71 (292)
T ss_dssp ETTEECHHHHHHHHHHH----------------------HHTTCSEEETTSGGGTGGGSCHHHHHHHHHHHHHHHTTSSC
T ss_pred CCCCcCHHHHHHHHHHH----------------------HHcCCCEEEECccccChhhCCHHHHHHHHHHHHHHhCCCCc
Confidence 57888877664443333 7889999877533 22 78888888776 34699
Q ss_pred EEeEecccccHHHHHHHhCCCCCHHHHHHHHHHHHHHcCCCEEEec
Q psy15126 242 LFVYQVSGEYAMLAFAAQAGALDLKRALMETLTCLRRGGADVIISY 287 (300)
Q Consensus 242 i~aY~vSgeY~~~r~Aa~~~~~n~~eal~E~~~~~~r~GAD~Ii~y 287 (300)
|++- + |-.+.++++..+-... +.|||.+++-
T Consensus 72 viaG-v-------------g~~~t~~ai~la~~A~-~~Gadavlv~ 102 (292)
T 2vc6_A 72 VIAG-A-------------GSNSTAEAIAFVRHAQ-NAGADGVLIV 102 (292)
T ss_dssp BEEE-C-------------CCSSHHHHHHHHHHHH-HTTCSEEEEE
T ss_pred EEEe-c-------------CCccHHHHHHHHHHHH-HcCCCEEEEc
Confidence 9965 3 2235566655444444 6899988774
No 71
>1qop_A Tryptophan synthase alpha chain; lyase, carbon-oxygen lyase, tryptophan biosynthesis, pyridoxal phosphate; HET: IPL PLP; 1.4A {Salmonella typhimurium} SCOP: c.1.2.4 PDB: 1k8x_A* 1wbj_A* 2clk_A* 2j9z_A* 3cep_A* 1k8y_A* 1a5s_A* 1a50_A* 1c29_A* 1c8v_A* 1c9d_A* 1bks_A* 1cx9_A* 1fuy_A* 1cw2_A* 1k7e_A* 1k7f_A* 1k7x_A* 1k3u_A* 1k8z_A* ...
Probab=86.46 E-value=1.9 Score=38.29 Aligned_cols=35 Identities=29% Similarity=0.778 Sum_probs=25.0
Q ss_pred hhcCCceeecc-C-cch-----------------------HHHHHHHHHhhCCCCCE--EeE
Q psy15126 211 VSQGADFLMVK-P-ALP-----------------------YLDIISEVKSRHPAYPL--FVY 245 (300)
Q Consensus 211 a~~GADivmVk-P-smm-----------------------~ld~Ir~~~d~~~~vpi--~aY 245 (300)
.+.|||+|.+. | |.+ .++.|+++++.++++|| |.|
T Consensus 41 ~~~GaD~ieig~P~sdp~~DG~~i~~a~~~al~~G~~~~~~~~~v~~ir~~~~~~Pv~lm~y 102 (268)
T 1qop_A 41 IDAGADALELGVPFSDPLADGPTIQNANLRAFAAGVTPAQCFEMLAIIREKHPTIPIGLLMY 102 (268)
T ss_dssp HHTTCSSEEEECCCSCCTTCCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSSSCEEEEEC
T ss_pred HHCCCCEEEECCCCCCccCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCEEEEEc
Confidence 57899999875 3 211 24779999988668998 545
No 72
>2rfg_A Dihydrodipicolinate synthase; beta barrel, amino-acid biosynthesis, diaminopimelate biosyn lyase, lysine biosynthesis, schiff base; 1.50A {Hahella chejuensis}
Probab=86.39 E-value=3.9 Score=37.17 Aligned_cols=79 Identities=15% Similarity=0.187 Sum_probs=51.8
Q ss_pred CCCcccchHhHHHHHHHHHhhhcccccCCCCCccccchhhhcCCceeeccCc------ch---HHHHHHHHHhh-CCCCC
Q psy15126 172 EDGSIHYEKTLKRLADISKAFSDAVYVPNHNTDRFQARDVSQGADFLMVKPA------LP---YLDIISEVKSR-HPAYP 241 (300)
Q Consensus 172 ~~g~i~nd~tl~~l~~~a~~~a~~~~~~~~n~~~~~~~Da~~GADivmVkPs------mm---~ld~Ir~~~d~-~~~vp 241 (300)
+||+|+.+..-+.+-.. ++.|+|-|.|.=+ +. +..+++.+.+. -..+|
T Consensus 14 ~dg~iD~~~l~~lv~~l----------------------i~~Gv~gi~v~GttGE~~~Ls~~Er~~v~~~~~~~~~grvp 71 (297)
T 2rfg_A 14 INGQVDEKALAGLVDWQ----------------------IKHGAHGLVPVGTTGESPTLTEEEHKRVVALVAEQAQGRVP 71 (297)
T ss_dssp ETTEECHHHHHHHHHHH----------------------HHTTCSEEECSSGGGTGGGSCHHHHHHHHHHHHHHHTTSSC
T ss_pred CCCCcCHHHHHHHHHHH----------------------HHcCCCEEEECccccchhhCCHHHHHHHHHHHHHHhCCCCe
Confidence 57888877664443333 7889999876543 22 78888888776 34699
Q ss_pred EEeEecccccHHHHHHHhCCCCCHHHHHHHHHHHHHHcCCCEEEec
Q psy15126 242 LFVYQVSGEYAMLAFAAQAGALDLKRALMETLTCLRRGGADVIISY 287 (300)
Q Consensus 242 i~aY~vSgeY~~~r~Aa~~~~~n~~eal~E~~~~~~r~GAD~Ii~y 287 (300)
|++= + |-.+.++++..+-.. ++.|||.+++-
T Consensus 72 viaG-v-------------g~~~t~~ai~la~~A-~~~Gadavlv~ 102 (297)
T 2rfg_A 72 VIAG-A-------------GSNNPVEAVRYAQHA-QQAGADAVLCV 102 (297)
T ss_dssp BEEE-C-------------CCSSHHHHHHHHHHH-HHHTCSEEEEC
T ss_pred EEEc-c-------------CCCCHHHHHHHHHHH-HhcCCCEEEEc
Confidence 9865 3 224566765544444 46899988874
No 73
>2ekc_A AQ_1548, tryptophan synthase alpha chain; structural genomics, lyase, NPPSFA, national project on PROT structural and functional analyses; 2.00A {Aquifex aeolicus}
Probab=86.27 E-value=3.7 Score=36.52 Aligned_cols=34 Identities=24% Similarity=0.589 Sum_probs=25.5
Q ss_pred hhcCCceeecc-Cc-ch-----------------------HHHHHHHHHhhCCCCCEEe
Q psy15126 211 VSQGADFLMVK-PA-LP-----------------------YLDIISEVKSRHPAYPLFV 244 (300)
Q Consensus 211 a~~GADivmVk-Ps-mm-----------------------~ld~Ir~~~d~~~~vpi~a 244 (300)
.+.|+|+|.+. |- .| .++.+|++++.+|++|+..
T Consensus 41 ~~~G~D~IElG~P~sdP~adgp~i~~a~~~al~~G~~~~~~~~~v~~ir~~~~~~Pi~~ 99 (262)
T 2ekc_A 41 LKNGTDILEIGFPFSDPVADGPTIQVAHEVALKNGIRFEDVLELSETLRKEFPDIPFLL 99 (262)
T ss_dssp HHTTCSEEEEECCCSCCTTSCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTSCEEE
T ss_pred HHcCCCEEEECCCCCCcccccHHHHHHHHHHHHcCCCHHHHHHHHHHHHhhcCCCCEEE
Confidence 68899999884 42 21 3577999998876899877
No 74
>3eb2_A Putative dihydrodipicolinate synthetase; lysine biosynthesis, pyruvate, TIM barrel, NYSGXRC, PSI2., structural genomics; HET: PGE; 2.04A {Rhodopseudomonas palustris} SCOP: c.1.10.0
Probab=86.06 E-value=6 Score=35.99 Aligned_cols=36 Identities=14% Similarity=0.169 Sum_probs=27.1
Q ss_pred hhcCCceeeccCcc---h----HHHHHHHHHhhCCCCCEEeEec
Q psy15126 211 VSQGADFLMVKPAL---P----YLDIISEVKSRHPAYPLFVYQV 247 (300)
Q Consensus 211 a~~GADivmVkPsm---m----~ld~Ir~~~d~~~~vpi~aY~v 247 (300)
.+.|||.+||-|-. + .++..+++.+.. ++||+-|++
T Consensus 96 ~~~Gadavlv~~P~y~~~~~~~l~~~f~~va~a~-~lPiilYn~ 138 (300)
T 3eb2_A 96 EKLGADGILAILEAYFPLKDAQIESYFRAIADAV-EIPVVIYTN 138 (300)
T ss_dssp HHHTCSEEEEEECCSSCCCHHHHHHHHHHHHHHC-SSCEEEEEC
T ss_pred HHcCCCEEEEcCCCCCCCCHHHHHHHHHHHHHHC-CCCEEEEEC
Confidence 46899999886531 1 466677777775 699999998
No 75
>4fxs_A Inosine-5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.24A {Vibrio cholerae o1 biovar el tor}
Probab=85.97 E-value=1.3 Score=43.24 Aligned_cols=56 Identities=20% Similarity=0.279 Sum_probs=41.6
Q ss_pred hhcCCceeeccCcch----HHHHHHHHHhhCCCCCEEeEecccccHHHHHHHhCCCCCHHHHHHHHHHHHHHcCCCEEEe
Q psy15126 211 VSQGADFLMVKPALP----YLDIISEVKSRHPAYPLFVYQVSGEYAMLAFAAQAGALDLKRALMETLTCLRRGGADVIIS 286 (300)
Q Consensus 211 a~~GADivmVkPsmm----~ld~Ir~~~d~~~~vpi~aY~vSgeY~~~r~Aa~~~~~n~~eal~E~~~~~~r~GAD~Ii~ 286 (300)
+++|+|+|.+-.+.. .++.|+++++.+|++||.+-++ .+.+ ..+.+.++|||.|.+
T Consensus 240 ~~aG~d~I~id~a~g~~~~~~~~i~~ir~~~p~~~Vi~g~v---------------~t~e-----~a~~l~~aGaD~I~V 299 (496)
T 4fxs_A 240 VEAGVDVLLIDSSHGHSEGVLQRIRETRAAYPHLEIIGGNV---------------ATAE-----GARALIEAGVSAVKV 299 (496)
T ss_dssp HHTTCSEEEEECSCTTSHHHHHHHHHHHHHCTTCCEEEEEE---------------CSHH-----HHHHHHHHTCSEEEE
T ss_pred HhccCceEEeccccccchHHHHHHHHHHHHCCCceEEEccc---------------CcHH-----HHHHHHHhCCCEEEE
Confidence 678999998765532 6899999999999999998554 2222 223444789999986
No 76
>3na8_A Putative dihydrodipicolinate synthetase; lyase; HET: MSE; 1.85A {Pseudomonas aeruginosa}
Probab=85.92 E-value=8.8 Score=35.23 Aligned_cols=79 Identities=13% Similarity=0.143 Sum_probs=40.5
Q ss_pred CCChHHHHHHHHHHhCCCcEEEeeecCCCCCCCCcceeeCCCCceecHHhHHHHHHHHHHHHHcCCCcccc--------C
Q psy15126 14 PDNPLFQVIPMIRKQFPSLTIACDVCLCGYTSHGHCAIFNEDGSIHYEKTLKRLADISKAFSDAGAHIVAP--------S 85 (300)
Q Consensus 14 ~~~~~~~~i~~ik~~~p~l~i~~Dvclc~yt~hGHcgi~~~~g~i~nd~Tl~~l~~~A~~~A~aGad~vAP--------S 85 (300)
..|++++ ++.++..|..++. .-+.||+ ++|+||.+ .+.+....+.+.|++-+.+ +
T Consensus 11 ~~~~~~~-~~~m~~~~~Gv~~---a~vTPf~---------~dg~iD~~----~l~~lv~~li~~Gv~Gi~v~GtTGE~~~ 73 (315)
T 3na8_A 11 SSGLVPR-GSHMSASIHGIIG---YTITPFA---------ADGGLDLP----ALGRSIERLIDGGVHAIAPLGSTGEGAY 73 (315)
T ss_dssp -------------CCCCEEEE---ECCCCBC---------TTSSBCHH----HHHHHHHHHHHTTCSEEECSSGGGTGGG
T ss_pred ccCcCCC-chhcccccCceEE---EeeCcCC---------CCCCcCHH----HHHHHHHHHHHcCCCEEEECccccChhh
Confidence 3455653 4455556654443 2355764 56777754 3444455667899998776 4
Q ss_pred CCCcchHHHHHHHHhhCCCCCCcccc
Q psy15126 86 DMMDNRIHAIKQSLFTSRQSSTTGLL 111 (300)
Q Consensus 86 dmMDgrv~air~aLd~~g~~~~v~Im 111 (300)
-..+-|.+-++...+..+= +++|+
T Consensus 74 Ls~~Er~~v~~~~v~~~~g--rvpVi 97 (315)
T 3na8_A 74 LSDPEWDEVVDFTLKTVAH--RVPTI 97 (315)
T ss_dssp SCHHHHHHHHHHHHHHHTT--SSCBE
T ss_pred CCHHHHHHHHHHHHHHhCC--CCcEE
Confidence 4566777777777766432 34554
No 77
>3e96_A Dihydrodipicolinate synthase; structural genomics, nysgrc, target 9375C, operon, PSI-2; 1.80A {Bacillus clausii ksm-k16} SCOP: c.1.10.0
Probab=85.65 E-value=4.8 Score=36.87 Aligned_cols=80 Identities=20% Similarity=0.281 Sum_probs=52.9
Q ss_pred ccC-CCcccchHhHHHHHHHHHhhhcccccCCCCCccccchhhhcCCceeeccCc------ch---HHHHHHHHHhh-CC
Q psy15126 170 FNE-DGSIHYEKTLKRLADISKAFSDAVYVPNHNTDRFQARDVSQGADFLMVKPA------LP---YLDIISEVKSR-HP 238 (300)
Q Consensus 170 ~~~-~g~i~nd~tl~~l~~~a~~~a~~~~~~~~n~~~~~~~Da~~GADivmVkPs------mm---~ld~Ir~~~d~-~~ 238 (300)
|++ ||+|+.+..-+.+... ++.|+|-|.|.=+ +. +..+++.+.+. -.
T Consensus 23 f~~~dg~iD~~~l~~lv~~l----------------------i~~Gv~Gl~v~GtTGE~~~Ls~eEr~~v~~~~v~~~~g 80 (316)
T 3e96_A 23 FRKSDGSIDWHHYKETVDRI----------------------VDNGIDVIVPCGNTSEFYALSLEEAKEEVRRTVEYVHG 80 (316)
T ss_dssp BCTTTCCBCHHHHHHHHHHH----------------------HTTTCCEECTTSGGGTGGGSCHHHHHHHHHHHHHHHTT
T ss_pred ccCCCCCCCHHHHHHHHHHH----------------------HHcCCCEEEeCccccCcccCCHHHHHHHHHHHHHHhCC
Confidence 466 7888877664443333 7899999876543 11 78888888776 34
Q ss_pred CCCEEeEecccccHHHHHHHhCCCCCHHHHHHHHHHHHHHcCCCEEEec
Q psy15126 239 AYPLFVYQVSGEYAMLAFAAQAGALDLKRALMETLTCLRRGGADVIISY 287 (300)
Q Consensus 239 ~vpi~aY~vSgeY~~~r~Aa~~~~~n~~eal~E~~~~~~r~GAD~Ii~y 287 (300)
.+||++= + |- +.++++..+ +..++.|||.+++-
T Consensus 81 rvpViaG-v-------------g~-~t~~ai~la-~~A~~~Gadavlv~ 113 (316)
T 3e96_A 81 RALVVAG-I-------------GY-ATSTAIELG-NAAKAAGADAVMIH 113 (316)
T ss_dssp SSEEEEE-E-------------CS-SHHHHHHHH-HHHHHHTCSEEEEC
T ss_pred CCcEEEE-e-------------Cc-CHHHHHHHH-HHHHhcCCCEEEEc
Confidence 6999876 2 22 455665444 44447899999974
No 78
>4avf_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase; 2.23A {Pseudomonas aeruginosa}
Probab=85.50 E-value=2.8 Score=40.85 Aligned_cols=56 Identities=21% Similarity=0.300 Sum_probs=40.8
Q ss_pred hhcCCceeeccCcc----hHHHHHHHHHhhCCCCCEEeEecccccHHHHHHHhCCCCCHHHHHHHHHHHHHHcCCCEEEe
Q psy15126 211 VSQGADFLMVKPAL----PYLDIISEVKSRHPAYPLFVYQVSGEYAMLAFAAQAGALDLKRALMETLTCLRRGGADVIIS 286 (300)
Q Consensus 211 a~~GADivmVkPsm----m~ld~Ir~~~d~~~~vpi~aY~vSgeY~~~r~Aa~~~~~n~~eal~E~~~~~~r~GAD~Ii~ 286 (300)
+++|+|+|.+--+. ..++.|+++++.+|++||.+-++ .+.++ ...+.++|||.|.+
T Consensus 238 ~~aG~d~I~id~a~g~~~~~~~~v~~i~~~~p~~~Vi~g~v---------------~t~e~-----a~~l~~aGaD~I~v 297 (490)
T 4avf_A 238 VAAGVDVVVVDTAHGHSKGVIERVRWVKQTFPDVQVIGGNI---------------ATAEA-----AKALAEAGADAVKV 297 (490)
T ss_dssp HHTTCSEEEEECSCCSBHHHHHHHHHHHHHCTTSEEEEEEE---------------CSHHH-----HHHHHHTTCSEEEE
T ss_pred hhcccceEEecccCCcchhHHHHHHHHHHHCCCceEEEeee---------------CcHHH-----HHHHHHcCCCEEEE
Confidence 67899999764332 36899999999998999998654 23322 23444799999987
No 79
>3flu_A DHDPS, dihydrodipicolinate synthase; TIM barrel, beta-alpha-barrel, amino-acid biosynthesis, diaminopimelate biosynthesis; 2.00A {Neisseria meningitidis serogroup B} SCOP: c.1.10.0
Probab=85.43 E-value=8.9 Score=34.72 Aligned_cols=36 Identities=19% Similarity=0.459 Sum_probs=27.1
Q ss_pred hhcCCceeeccCcc---h----HHHHHHHHHhhCCCCCEEeEec
Q psy15126 211 VSQGADFLMVKPAL---P----YLDIISEVKSRHPAYPLFVYQV 247 (300)
Q Consensus 211 a~~GADivmVkPsm---m----~ld~Ir~~~d~~~~vpi~aY~v 247 (300)
.+.|||.+||-|-. + .++..+++.+.. ++||+-|++
T Consensus 99 ~~~Gadavlv~~P~y~~~~~~~l~~~f~~va~a~-~lPiilYn~ 141 (297)
T 3flu_A 99 EKAGADYTLSVVPYYNKPSQEGIYQHFKTIAEAT-SIPMIIYNV 141 (297)
T ss_dssp HHTTCSEEEEECCCSSCCCHHHHHHHHHHHHHHC-CSCEEEEEC
T ss_pred HHcCCCEEEECCCCCCCCCHHHHHHHHHHHHHhC-CCCEEEEEC
Confidence 46899999876531 1 466677777775 799999997
No 80
>3qze_A DHDPS, dihydrodipicolinate synthase; alpha beta barrel, cytoplasmic; 1.59A {Pseudomonas aeruginosa} PDB: 3puo_A* 3noe_A 3ps7_A* 3s8h_A
Probab=85.34 E-value=7.9 Score=35.54 Aligned_cols=36 Identities=25% Similarity=0.396 Sum_probs=27.3
Q ss_pred hhcCCceeeccCc-c--h----HHHHHHHHHhhCCCCCEEeEec
Q psy15126 211 VSQGADFLMVKPA-L--P----YLDIISEVKSRHPAYPLFVYQV 247 (300)
Q Consensus 211 a~~GADivmVkPs-m--m----~ld~Ir~~~d~~~~vpi~aY~v 247 (300)
.+.|||.+||-|- - + .++..+++.+.. ++||+-|++
T Consensus 115 ~~~Gadavlv~~P~y~~~s~~~l~~~f~~va~a~-~lPiilYn~ 157 (314)
T 3qze_A 115 KSGGADACLLVTPYYNKPTQEGMYQHFRHIAEAV-AIPQILYNV 157 (314)
T ss_dssp HHTTCSEEEEECCCSSCCCHHHHHHHHHHHHHHS-CSCEEEEEC
T ss_pred HHcCCCEEEEcCCCCCCCCHHHHHHHHHHHHHhc-CCCEEEEeC
Confidence 4689999988653 1 1 466677777775 899999998
No 81
>1o66_A 3-methyl-2-oxobutanoate hydroxymethyltransferase; structural genomics; HET: MSE; 1.75A {Neisseria meningitidis serogroup B} SCOP: c.1.12.8 PDB: 1o68_A*
Probab=85.28 E-value=16 Score=33.90 Aligned_cols=65 Identities=12% Similarity=0.124 Sum_probs=42.9
Q ss_pred HHHHHHHHHhCCCcEEEeeecCCCCCCCCcceeeCCCCceecHHhHHHHHHHHHHHHHcCCCccccCCC--CcchHHHHH
Q psy15126 19 FQVIPMIRKQFPSLTIACDVCLCGYTSHGHCAIFNEDGSIHYEKTLKRLADISKAFSDAGAHIVAPSDM--MDNRIHAIK 96 (300)
Q Consensus 19 ~~~i~~ik~~~p~l~i~~Dvclc~yt~hGHcgi~~~~g~i~nd~Tl~~l~~~A~~~A~aGad~vAPSdm--MDgrv~air 96 (300)
..-.+.|.+..+...|++|. ||-+. ..|.++.++-|..+.++||+.|-.-+- |-.+|.++
T Consensus 66 i~h~~aV~r~~~~~~vvaD~---pfgsy--------------~~s~~~a~~na~rl~kaGa~aVklEdg~e~~~~I~al- 127 (275)
T 1o66_A 66 CYHTECVARGAKNAMIVSDL---PFGAY--------------QQSKEQAFAAAAELMAAGAHMVKLEGGVWMAETTEFL- 127 (275)
T ss_dssp HHHHHHHHHHCSSSEEEEEC---CTTSS--------------SSCHHHHHHHHHHHHHTTCSEEEEECSGGGHHHHHHH-
T ss_pred HHHHHHHHhhCCCCeEEEEC---CCCCc--------------cCCHHHHHHHHHHHHHcCCcEEEECCcHHHHHHHHHH-
Confidence 34567778888887777995 44221 124577788888899999999988554 33444444
Q ss_pred HHHhhCCC
Q psy15126 97 QSLFTSRQ 104 (300)
Q Consensus 97 ~aLd~~g~ 104 (300)
.++|.
T Consensus 128 ---~~agI 132 (275)
T 1o66_A 128 ---QMRGI 132 (275)
T ss_dssp ---HHTTC
T ss_pred ---HHcCC
Confidence 34565
No 82
>2v9d_A YAGE; dihydrodipicolinic acid synthase, N-acetyl neuraminate lyase, NAL, lyase, DHDPS, prophage; 2.15A {Escherichia coli} PDB: 2v8z_A 3nev_A* 3n2x_A*
Probab=85.27 E-value=7.6 Score=36.20 Aligned_cols=36 Identities=19% Similarity=0.356 Sum_probs=26.3
Q ss_pred hhcCCceeeccCc-c--h----HHHHHHHHHhhCCCCCEEeEec
Q psy15126 211 VSQGADFLMVKPA-L--P----YLDIISEVKSRHPAYPLFVYQV 247 (300)
Q Consensus 211 a~~GADivmVkPs-m--m----~ld~Ir~~~d~~~~vpi~aY~v 247 (300)
.+.|||.|||-|- - + .++..+++.+.. ++||+-|++
T Consensus 123 ~~~Gadavlv~~P~Y~~~s~~~l~~~f~~VA~a~-~lPiilYn~ 165 (343)
T 2v9d_A 123 QQAGADGIVVINPYYWKVSEANLIRYFEQVADSV-TLPVMLYNF 165 (343)
T ss_dssp HHHTCSEEEEECCSSSCCCHHHHHHHHHHHHHTC-SSCEEEEEC
T ss_pred HhcCCCEEEECCCCCCCCCHHHHHHHHHHHHHhc-CCCEEEEeC
Confidence 4679999888543 1 1 466667777765 799999998
No 83
>3f6c_A Positive transcription regulator EVGA; structural genomics, PSI-2, protein structure initiative, PO transcription regulator EVGA; 1.45A {Escherichia coli k-12}
Probab=85.19 E-value=3.6 Score=30.16 Aligned_cols=48 Identities=8% Similarity=0.189 Sum_probs=34.9
Q ss_pred CCCCccccchhhhcCCceeeccCcch---HHHHHHHHHhhCCCCCEEeEec
Q psy15126 200 NHNTDRFQARDVSQGADFLMVKPALP---YLDIISEVKSRHPAYPLFVYQV 247 (300)
Q Consensus 200 ~~n~~~~~~~Da~~GADivmVkPsmm---~ld~Ir~~~d~~~~vpi~aY~v 247 (300)
-+|.......-.+...|+|++--.|+ -++.++++++.++++||+..+.
T Consensus 32 ~~~~~~a~~~~~~~~~dlii~d~~l~~~~g~~~~~~l~~~~~~~~ii~~s~ 82 (134)
T 3f6c_A 32 LTEGGSAVQRVETLKPDIVIIDVDIPGVNGIQVLETLRKRQYSGIIIIVSA 82 (134)
T ss_dssp ESSSTTHHHHHHHHCCSEEEEETTCSSSCHHHHHHHHHHTTCCSEEEEEEC
T ss_pred cCCHHHHHHHHHhcCCCEEEEecCCCCCChHHHHHHHHhcCCCCeEEEEeC
Confidence 34444544444456689998875543 7899999998888999998865
No 84
>4e7p_A Response regulator; DNA binding, cytosol, transcription regulator; 1.89A {Streptococcus pneumoniae} PDB: 4e7o_A
Probab=84.92 E-value=4.7 Score=30.56 Aligned_cols=37 Identities=14% Similarity=0.283 Sum_probs=29.6
Q ss_pred hhcCCceeeccCcch---HHHHHHHHHhhCCCCCEEeEec
Q psy15126 211 VSQGADFLMVKPALP---YLDIISEVKSRHPAYPLFVYQV 247 (300)
Q Consensus 211 a~~GADivmVkPsmm---~ld~Ir~~~d~~~~vpi~aY~v 247 (300)
.+...|+|++--.|+ -++.++++++.++++||+..+.
T Consensus 63 ~~~~~dlii~D~~l~~~~g~~~~~~l~~~~~~~~ii~ls~ 102 (150)
T 4e7p_A 63 EKESVDIAILDVEMPVKTGLEVLEWIRSEKLETKVVVVTT 102 (150)
T ss_dssp TTSCCSEEEECSSCSSSCHHHHHHHHHHTTCSCEEEEEES
T ss_pred hccCCCEEEEeCCCCCCcHHHHHHHHHHhCCCCeEEEEeC
Confidence 345679998876544 6899999998889999999965
No 85
>3fkr_A L-2-keto-3-deoxyarabonate dehydratase; DHDPS/NAL family, complex, pyruvate, lyase; HET: KPI; 1.80A {Azospirillum brasilense} PDB: 3fkk_A
Probab=84.72 E-value=9.8 Score=34.78 Aligned_cols=36 Identities=22% Similarity=0.387 Sum_probs=26.5
Q ss_pred hhcCCceeeccCcc------h----HHHHHHHHHhhCCCCCEEeEec
Q psy15126 211 VSQGADFLMVKPAL------P----YLDIISEVKSRHPAYPLFVYQV 247 (300)
Q Consensus 211 a~~GADivmVkPsm------m----~ld~Ir~~~d~~~~vpi~aY~v 247 (300)
.+.|||.+||-|-. + -++..+++.+.. ++||+-|++
T Consensus 100 ~~~Gadavlv~~Pyy~~~~~~s~~~l~~~f~~va~a~-~lPiilYn~ 145 (309)
T 3fkr_A 100 QQLGAAMVMAMPPYHGATFRVPEAQIFEFYARVSDAI-AIPIMVQDA 145 (309)
T ss_dssp HHTTCSEEEECCSCBTTTBCCCHHHHHHHHHHHHHHC-SSCEEEEEC
T ss_pred HHcCCCEEEEcCCCCccCCCCCHHHHHHHHHHHHHhc-CCCEEEEeC
Confidence 46899999886531 1 355666777765 899999998
No 86
>3l21_A DHDPS, dihydrodipicolinate synthase; DAPA, dimer, RV2753C, lysine biosynthesis, amino-acid biosynthesis, diaminopimelate biosynthesis; HET: KPI CME; 2.10A {Mycobacterium tuberculosis} SCOP: c.1.10.1 PDB: 1xxx_A
Probab=84.71 E-value=7.6 Score=35.40 Aligned_cols=36 Identities=22% Similarity=0.469 Sum_probs=27.4
Q ss_pred hhcCCceeeccCcc---h----HHHHHHHHHhhCCCCCEEeEec
Q psy15126 211 VSQGADFLMVKPAL---P----YLDIISEVKSRHPAYPLFVYQV 247 (300)
Q Consensus 211 a~~GADivmVkPsm---m----~ld~Ir~~~d~~~~vpi~aY~v 247 (300)
.+.|||.+||-|-. + .++..+++.+.. ++||+-|++
T Consensus 107 ~~~Gadavlv~~P~y~~~s~~~l~~~f~~va~a~-~lPiilYn~ 149 (304)
T 3l21_A 107 AAEGAHGLLVVTPYYSKPPQRGLQAHFTAVADAT-ELPMLLYDI 149 (304)
T ss_dssp HHHTCSEEEEECCCSSCCCHHHHHHHHHHHHTSC-SSCEEEEEC
T ss_pred HHcCCCEEEECCCCCCCCCHHHHHHHHHHHHHhc-CCCEEEEeC
Confidence 46899999887532 1 466677777775 899999997
No 87
>3tak_A DHDPS, dihydrodipicolinate synthase; TIM barrel, lysine biosynthesis, pyruvate, lyase; 1.42A {Acinetobacter baumannii} PDB: 3pud_A* 3pue_A* 3pul_A 3rk8_A 3tce_A* 3tdf_A 3u8g_A 3uqn_A 4dxv_A
Probab=84.71 E-value=8.5 Score=34.67 Aligned_cols=36 Identities=22% Similarity=0.399 Sum_probs=27.4
Q ss_pred hhcCCceeeccCcc---h----HHHHHHHHHhhCCCCCEEeEec
Q psy15126 211 VSQGADFLMVKPAL---P----YLDIISEVKSRHPAYPLFVYQV 247 (300)
Q Consensus 211 a~~GADivmVkPsm---m----~ld~Ir~~~d~~~~vpi~aY~v 247 (300)
.+.|||.+||-|-. + .++..+++.+.. ++||+-|++
T Consensus 93 ~~~Gadavlv~~P~y~~~~~~~l~~~f~~ia~a~-~lPiilYn~ 135 (291)
T 3tak_A 93 KDLGADAALLVTPYYNKPTQEGLYQHYKAIAEAV-ELPLILYNV 135 (291)
T ss_dssp HHHTCSEEEEECCCSSCCCHHHHHHHHHHHHHHC-CSCEEEEEC
T ss_pred HhcCCCEEEEcCCCCCCCCHHHHHHHHHHHHHhc-CCCEEEEec
Confidence 46899999886531 1 466777777775 899999997
No 88
>3si9_A DHDPS, dihydrodipicolinate synthase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, TIM barrel; 2.10A {Bartonella henselae}
Probab=84.54 E-value=10 Score=34.83 Aligned_cols=36 Identities=22% Similarity=0.477 Sum_probs=27.0
Q ss_pred hhcCCceeeccCcc---h----HHHHHHHHHhhCCCCCEEeEec
Q psy15126 211 VSQGADFLMVKPAL---P----YLDIISEVKSRHPAYPLFVYQV 247 (300)
Q Consensus 211 a~~GADivmVkPsm---m----~ld~Ir~~~d~~~~vpi~aY~v 247 (300)
.+.|||.+||-|-. + .++..+++.+.. ++||+-|++
T Consensus 114 ~~~Gadavlv~~P~y~~~~~~~l~~~f~~va~a~-~lPiilYn~ 156 (315)
T 3si9_A 114 EKAGADAVLVVTPYYNRPNQRGLYTHFSSIAKAI-SIPIIIYNI 156 (315)
T ss_dssp HHTTCSEEEEECCCSSCCCHHHHHHHHHHHHHHC-SSCEEEEEC
T ss_pred HhcCCCEEEECCCCCCCCCHHHHHHHHHHHHHcC-CCCEEEEeC
Confidence 46899999876531 1 466667777775 799999998
No 89
>3dz1_A Dihydrodipicolinate synthase; lysine biosynthesis, pyruvate, TIM barrel, NYSGXRC, PSI2, structural genomics; 1.87A {Rhodopseudomonas palustris} SCOP: c.1.10.0
Probab=84.40 E-value=9.1 Score=34.99 Aligned_cols=52 Identities=10% Similarity=0.167 Sum_probs=33.7
Q ss_pred CCCCceecHHhHHHHHHHHHHHHHcCCCcccc--------CCCCcchHHHHHHHHhhCCCCCCcccc
Q psy15126 53 NEDGSIHYEKTLKRLADISKAFSDAGAHIVAP--------SDMMDNRIHAIKQSLFTSRQSSTTGLL 111 (300)
Q Consensus 53 ~~~g~i~nd~Tl~~l~~~A~~~A~aGad~vAP--------SdmMDgrv~air~aLd~~g~~~~v~Im 111 (300)
+++|+||.+ .+.+....+.+.|++-+.+ +-..+-|...++...+.. + +++|+
T Consensus 21 ~~dg~iD~~----~l~~lv~~li~~Gv~Gl~v~GtTGE~~~Lt~~Er~~v~~~~v~~~--g-rvpVi 80 (313)
T 3dz1_A 21 HDDGKIDDV----SIDRLTDFYAEVGCEGVTVLGILGEAPKLDAAEAEAVATRFIKRA--K-SMQVI 80 (313)
T ss_dssp CTTSCBCHH----HHHHHHHHHHHTTCSEEEESTGGGTGGGSCHHHHHHHHHHHHHHC--T-TSEEE
T ss_pred CCCCCcCHH----HHHHHHHHHHHCCCCEEEeCccCcChhhCCHHHHHHHHHHHHHHc--C-CCcEE
Confidence 456777754 3445555667899997766 445667777777777666 2 45554
No 90
>3cpr_A Dihydrodipicolinate synthetase; (beta/alpha)8-barrel fold with A C-terminal alpha-helical segment, amino-acid biosynthesis, cytoplasm; HET: MCL; 2.20A {Corynebacterium glutamicum}
Probab=84.31 E-value=11 Score=34.32 Aligned_cols=36 Identities=28% Similarity=0.510 Sum_probs=26.1
Q ss_pred hhcCCceeeccCcc---h----HHHHHHHHHhhCCCCCEEeEec
Q psy15126 211 VSQGADFLMVKPAL---P----YLDIISEVKSRHPAYPLFVYQV 247 (300)
Q Consensus 211 a~~GADivmVkPsm---m----~ld~Ir~~~d~~~~vpi~aY~v 247 (300)
.+.|||.+||-|-. + -++..+++.+.. ++||+-|++
T Consensus 108 ~~~Gadavlv~~P~y~~~~~~~l~~~f~~ia~a~-~lPiilYn~ 150 (304)
T 3cpr_A 108 ASAGADGLLVVTPYYSKPSQEGLLAHFGAIAAAT-EVPICLYDI 150 (304)
T ss_dssp HHTTCSEEEEECCCSSCCCHHHHHHHHHHHHHHC-CSCEEEEEC
T ss_pred HhcCCCEEEECCCCCCCCCHHHHHHHHHHHHHhc-CCCEEEEeC
Confidence 46899998875431 1 456666777765 799999998
No 91
>2ojp_A DHDPS, dihydrodipicolinate synthase; dimer, lysine biosynthe lyase; HET: KGC GOL; 1.70A {Escherichia coli} PDB: 1yxc_A 1dhp_A 1yxd_A* 2ats_A* 3du0_A* 3c0j_A* 3ubs_A* 4eou_A* 3i7q_A* 3i7r_A* 3i7s_A* 2pur_A* 1s5v_A 1s5w_A 1s5t_A 3den_A* 2a6l_A 2a6n_A 3g0s_A
Probab=84.28 E-value=8 Score=34.87 Aligned_cols=36 Identities=14% Similarity=0.253 Sum_probs=26.2
Q ss_pred hhcCCceeeccCc-c--h----HHHHHHHHHhhCCCCCEEeEec
Q psy15126 211 VSQGADFLMVKPA-L--P----YLDIISEVKSRHPAYPLFVYQV 247 (300)
Q Consensus 211 a~~GADivmVkPs-m--m----~ld~Ir~~~d~~~~vpi~aY~v 247 (300)
.+.|||.+||-|- - + .+...+++.+.. ++||+-|++
T Consensus 93 ~~~Gadavlv~~P~y~~~s~~~l~~~f~~ia~a~-~lPiilYn~ 135 (292)
T 2ojp_A 93 NDSGIVGCLTVTPYYNRPSQEGLYQHFKAIAEHT-DLPQILYNV 135 (292)
T ss_dssp TTSSCSEEEEECCCSSCCCHHHHHHHHHHHHTTC-SSCEEEECC
T ss_pred HhcCCCEEEECCCCCCCCCHHHHHHHHHHHHHhc-CCCEEEEeC
Confidence 4679999888543 1 1 466667777764 799999997
No 92
>2nuw_A 2-keto-3-deoxygluconate/2-keto-3-deoxy-6-phospho aldolase; TIM barrel, lyase; 1.80A {Sulfolobus acidocaldarius dsm 639} PDB: 2nux_A 2nuy_A
Probab=84.07 E-value=6.8 Score=35.34 Aligned_cols=78 Identities=19% Similarity=0.296 Sum_probs=50.7
Q ss_pred ccCCCcccchHhHHHHHHHHHhhhcccccCCCCCccccchhhhcCCceeecc------Ccch---HHHHHHHHHhhCCCC
Q psy15126 170 FNEDGSIHYEKTLKRLADISKAFSDAVYVPNHNTDRFQARDVSQGADFLMVK------PALP---YLDIISEVKSRHPAY 240 (300)
Q Consensus 170 ~~~~g~i~nd~tl~~l~~~a~~~a~~~~~~~~n~~~~~~~Da~~GADivmVk------Psmm---~ld~Ir~~~d~~~~v 240 (300)
|++||+||.+..-+.+-.+ ++.|+|-|.|. |++. +..+++.+.+.-.+
T Consensus 11 f~~dg~iD~~~l~~lv~~l----------------------i~~Gv~gl~v~GtTGE~~~Ls~eEr~~v~~~~~~~~~g- 67 (288)
T 2nuw_A 11 FDKQGKVNVDALKTHAKNL----------------------LEKGIDAIFVNGTTGLGPALSKDEKRQNLNALYDVTHK- 67 (288)
T ss_dssp BCTTSCBCHHHHHHHHHHH----------------------HHTTCCEEEETSTTTTGGGSCHHHHHHHHHHHTTTCSC-
T ss_pred CCCCCCcCHHHHHHHHHHH----------------------HHcCCCEEEECccccChhhCCHHHHHHHHHHHHHHhCC-
Confidence 4678898877664443333 78899998774 3332 78888888876434
Q ss_pred CEEeEecccccHHHHHHHhCCCCCHHHHHHHHHHHHHHcCCCEEEe
Q psy15126 241 PLFVYQVSGEYAMLAFAAQAGALDLKRALMETLTCLRRGGADVIIS 286 (300)
Q Consensus 241 pi~aY~vSgeY~~~r~Aa~~~~~n~~eal~E~~~~~~r~GAD~Ii~ 286 (300)
|++ ++ |-.+.++++..+-.. ++.|||.+++
T Consensus 68 -Via-Gv-------------g~~~t~~ai~la~~A-~~~Gadavlv 97 (288)
T 2nuw_A 68 -LIF-QV-------------GSLNLNDVMELVKFS-NEMDILGVSS 97 (288)
T ss_dssp -EEE-EC-------------CCSCHHHHHHHHHHH-HTSCCSEEEE
T ss_pred -eEE-ee-------------CCCCHHHHHHHHHHH-HhcCCCEEEE
Confidence 443 23 334667775544444 4789998887
No 93
>4dpp_A DHDPS 2, dihydrodipicolinate synthase 2, chloroplastic; amino-acid biosynthesis, (S)-lysine biosynthesis VIA DAP PAT (beta/alpha)8-barrel; 2.00A {Arabidopsis thaliana} PDB: 4dpq_A* 3tuu_A*
Probab=84.03 E-value=8 Score=36.82 Aligned_cols=81 Identities=16% Similarity=0.238 Sum_probs=52.8
Q ss_pred ccCCCcccchHhHHHHHHHHHhhhcccccCCCCCccccchhhhcCCceeeccCc------ch---HHHHHHHHHhh-CCC
Q psy15126 170 FNEDGSIHYEKTLKRLADISKAFSDAVYVPNHNTDRFQARDVSQGADFLMVKPA------LP---YLDIISEVKSR-HPA 239 (300)
Q Consensus 170 ~~~~g~i~nd~tl~~l~~~a~~~a~~~~~~~~n~~~~~~~Da~~GADivmVkPs------mm---~ld~Ir~~~d~-~~~ 239 (300)
|++||+|+.+.. ++|.+- -++.|+|-|.|.=+ +. +..+++.+.+. -..
T Consensus 71 F~~dg~ID~~al-~~lv~~---------------------li~~Gv~Gl~v~GTTGE~~~Ls~eEr~~vi~~~ve~~~gr 128 (360)
T 4dpp_A 71 YLPDGRFDLEAY-DDLVNI---------------------QIQNGAEGVIVGGTTGEGQLMSWDEHIMLIGHTVNCFGGS 128 (360)
T ss_dssp BCTTSSBCHHHH-HHHHHH---------------------HHHTTCCEEEESSTTTTGGGSCHHHHHHHHHHHHHHHTTT
T ss_pred CCCCCCcCHHHH-HHHHHH---------------------HHHcCCCEEEecccccChhhCCHHHHHHHHHHHHHHhCCC
Confidence 467788877655 333332 27899998877433 21 77888888776 346
Q ss_pred CCEEeEecccccHHHHHHHhCCCCCHHHHHHHHHHHHHHcCCCEEEec
Q psy15126 240 YPLFVYQVSGEYAMLAFAAQAGALDLKRALMETLTCLRRGGADVIISY 287 (300)
Q Consensus 240 vpi~aY~vSgeY~~~r~Aa~~~~~n~~eal~E~~~~~~r~GAD~Ii~y 287 (300)
+||++= + |-.+.++++..+-... +.|||.+++-
T Consensus 129 vpViaG-v-------------g~~st~eai~la~~A~-~~Gadavlvv 161 (360)
T 4dpp_A 129 IKVIGN-T-------------GSNSTREAIHATEQGF-AVGMHAALHI 161 (360)
T ss_dssp SEEEEE-C-------------CCSSHHHHHHHHHHHH-HTTCSEEEEE
T ss_pred CeEEEe-c-------------CCCCHHHHHHHHHHHH-HcCCCEEEEc
Confidence 899884 4 2236677765554444 6899988874
No 94
>3s5o_A 4-hydroxy-2-oxoglutarate aldolase, mitochondrial; beta barrel, schiff base, hydroxyproline metabolis; HET: KPI; 1.97A {Homo sapiens} SCOP: c.1.10.0 PDB: 3s5n_A
Probab=84.02 E-value=8 Score=35.25 Aligned_cols=47 Identities=6% Similarity=0.037 Sum_probs=30.6
Q ss_pred CCCCceecHHhHHHHHHHHHHHHHcCCCcccc--------CCCCcchHHHHHHHHhhCC
Q psy15126 53 NEDGSIHYEKTLKRLADISKAFSDAGAHIVAP--------SDMMDNRIHAIKQSLFTSR 103 (300)
Q Consensus 53 ~~~g~i~nd~Tl~~l~~~A~~~A~aGad~vAP--------SdmMDgrv~air~aLd~~g 103 (300)
++||+||.+ .+.+....+.+.|++-+.+ +-..+-|..-++...+..+
T Consensus 27 ~~dg~iD~~----~l~~lv~~li~~Gv~Gl~v~GtTGE~~~Ls~~Er~~v~~~~~~~~~ 81 (307)
T 3s5o_A 27 TATAEVDYG----KLEENLHKLGTFPFRGFVVQGSNGEFPFLTSSERLEVVSRVRQAMP 81 (307)
T ss_dssp CTTSCBCHH----HHHHHHHHHTTSCCSEEEESSGGGTGGGSCHHHHHHHHHHHHHTSC
T ss_pred CCCCCcCHH----HHHHHHHHHHHcCCCEEEECccccchhhCCHHHHHHHHHHHHHHcC
Confidence 456777765 3444455567899998765 4556677777777666543
No 95
>3eod_A Protein HNR; response regulator, phosphoprotein, two-component regulatory system, signaling protein; 1.75A {Escherichia coli K12}
Probab=83.61 E-value=4.1 Score=29.77 Aligned_cols=59 Identities=17% Similarity=0.346 Sum_probs=40.3
Q ss_pred hcCCceeeccCcch---HHHHHHHHHhhCCCCCEEeEecccccHHHHHHHhCCCCCHHHHHHHHHHHHHHcCCCEEEecc
Q psy15126 212 SQGADFLMVKPALP---YLDIISEVKSRHPAYPLFVYQVSGEYAMLAFAAQAGALDLKRALMETLTCLRRGGADVIISYY 288 (300)
Q Consensus 212 ~~GADivmVkPsmm---~ld~Ir~~~d~~~~vpi~aY~vSgeY~~~r~Aa~~~~~n~~eal~E~~~~~~r~GAD~Ii~y~ 288 (300)
+...|+|++--.++ -++.++++++.++++||+..+... +. +. ....+ +.||+-++.||
T Consensus 49 ~~~~dlvi~d~~l~~~~g~~~~~~l~~~~~~~~ii~~t~~~--------------~~-~~---~~~~~-~~g~~~~l~KP 109 (130)
T 3eod_A 49 GFTPDLMICDIAMPRMNGLKLLEHIRNRGDQTPVLVISATE--------------NM-AD---IAKAL-RLGVEDVLLKP 109 (130)
T ss_dssp TCCCSEEEECCC-----CHHHHHHHHHTTCCCCEEEEECCC--------------CH-HH---HHHHH-HHCCSEEEESC
T ss_pred cCCCCEEEEecCCCCCCHHHHHHHHHhcCCCCCEEEEEcCC--------------CH-HH---HHHHH-HcCCCEEEeCC
Confidence 44579998885543 688899998888899999985422 11 11 12233 68999999998
Q ss_pred h
Q psy15126 289 T 289 (300)
Q Consensus 289 A 289 (300)
-
T Consensus 110 ~ 110 (130)
T 3eod_A 110 V 110 (130)
T ss_dssp C
T ss_pred C
Confidence 6
No 96
>3d0c_A Dihydrodipicolinate synthase; lysine biosynthesis, pyruvate, TIM barrel, NYSGXRC, PSI-2, structural genomics; 1.90A {Oceanobacillus iheyensis HTE831}
Probab=83.41 E-value=13 Score=34.02 Aligned_cols=38 Identities=16% Similarity=0.300 Sum_probs=26.9
Q ss_pred hhcCCceeeccCc-c--h----HHHHHHHHHhhCCCCCEEeEeccc
Q psy15126 211 VSQGADFLMVKPA-L--P----YLDIISEVKSRHPAYPLFVYQVSG 249 (300)
Q Consensus 211 a~~GADivmVkPs-m--m----~ld~Ir~~~d~~~~vpi~aY~vSg 249 (300)
.+.|||.+||-|- - + .+...+++.+.. ++||+-|+.+|
T Consensus 103 ~~~Gadavlv~~P~y~~~s~~~l~~~f~~va~a~-~lPiilYn~tg 147 (314)
T 3d0c_A 103 IDSGADCVMIHQPVHPYITDAGAVEYYRNIIEAL-DAPSIIYFKDA 147 (314)
T ss_dssp HHTTCSEEEECCCCCSCCCHHHHHHHHHHHHHHS-SSCEEEEECCT
T ss_pred HHcCCCEEEECCCCCCCCCHHHHHHHHHHHHHhC-CCCEEEEeCCC
Confidence 4689999887553 1 1 466667777775 69999999544
No 97
>3jte_A Response regulator receiver protein; structural genomics, nysgrc, response regulator receiver DOM target 11226E, PSI-2; 1.90A {Clostridium thermocellum atcc 27405}
Probab=83.38 E-value=9.5 Score=28.25 Aligned_cols=58 Identities=17% Similarity=0.323 Sum_probs=39.8
Q ss_pred hcCCceeeccCcch---HHHHHHHHHhhCCCCCEEeEecccccHHHHHHHhCCCCCHHHHHHHHHHHHHHcCCCEEEecc
Q psy15126 212 SQGADFLMVKPALP---YLDIISEVKSRHPAYPLFVYQVSGEYAMLAFAAQAGALDLKRALMETLTCLRRGGADVIISYY 288 (300)
Q Consensus 212 ~~GADivmVkPsmm---~ld~Ir~~~d~~~~vpi~aY~vSgeY~~~r~Aa~~~~~n~~eal~E~~~~~~r~GAD~Ii~y~ 288 (300)
+...|+|++--.++ -++.++++++.++++||+..+........ ...+ +.||+-.+.||
T Consensus 47 ~~~~dlvi~d~~l~~~~g~~~~~~l~~~~~~~~ii~ls~~~~~~~~------------------~~~~-~~g~~~~l~kp 107 (143)
T 3jte_A 47 CNSIDVVITDMKMPKLSGMDILREIKKITPHMAVIILTGHGDLDNA------------------ILAM-KEGAFEYLRKP 107 (143)
T ss_dssp TTTCCEEEEESCCSSSCHHHHHHHHHHHCTTCEEEEEECTTCHHHH------------------HHHH-HTTCSEEEESS
T ss_pred CCCCCEEEEeCCCCCCcHHHHHHHHHHhCCCCeEEEEECCCCHHHH------------------HHHH-HhCcceeEeCC
Confidence 35679998876543 68899999988889999998652221111 1223 57888778887
No 98
>1f6k_A N-acetylneuraminate lyase; beta barrel; 1.60A {Haemophilus influenzae} SCOP: c.1.10.1 PDB: 1f5z_A 1f6p_A 1f73_A* 1f74_A* 1f7b_A*
Probab=83.01 E-value=9 Score=34.53 Aligned_cols=36 Identities=14% Similarity=0.199 Sum_probs=25.7
Q ss_pred hhcCCceeeccCcc---h----HHHHHHHHHhhCCCCCEEeEec
Q psy15126 211 VSQGADFLMVKPAL---P----YLDIISEVKSRHPAYPLFVYQV 247 (300)
Q Consensus 211 a~~GADivmVkPsm---m----~ld~Ir~~~d~~~~vpi~aY~v 247 (300)
.+.|||.+||-|-. + .++..+++.+.. ++||+-|++
T Consensus 96 ~~~Gadavlv~~P~y~~~~~~~l~~~f~~va~a~-~lPiilYn~ 138 (293)
T 1f6k_A 96 TELGYDCLSAVTPFYYKFSFPEIKHYYDTIIAET-GSNMIVYSI 138 (293)
T ss_dssp HHHTCSEEEEECCCSSCCCHHHHHHHHHHHHHHH-CCCEEEEEC
T ss_pred HhcCCCEEEECCCCCCCCCHHHHHHHHHHHHHhC-CCCEEEEEC
Confidence 46799998885431 1 456666777764 689999997
No 99
>4e38_A Keto-hydroxyglutarate-aldolase/keto-deoxy-phospho aldolase; lyase; 1.64A {Vibrionales bacterium swat-3}
Probab=82.86 E-value=6.4 Score=35.34 Aligned_cols=55 Identities=15% Similarity=0.180 Sum_probs=38.5
Q ss_pred hhcCCceeeccCcchHHHHHHHHHhhCCCCCEEeEecccccHHHHHHHhCCCCCHHHHHHHHHHHHHHcCCCEEEecchH
Q psy15126 211 VSQGADFLMVKPALPYLDIISEVKSRHPAYPLFVYQVSGEYAMLAFAAQAGALDLKRALMETLTCLRRGGADVIISYYTP 290 (300)
Q Consensus 211 a~~GADivmVkPsmm~ld~Ir~~~d~~~~vpi~aY~vSgeY~~~r~Aa~~~~~n~~eal~E~~~~~~r~GAD~Ii~y~A~ 290 (300)
+++|||+| |.|.. -.++++..++. ++|++.= + .+. -|....+ +.|||+|-+.|+.
T Consensus 103 i~AGA~fI-vsP~~-~~~vi~~~~~~--gi~~ipG-v---------------~Tp----tEi~~A~-~~Gad~vK~FPa~ 157 (232)
T 4e38_A 103 KEAGATFV-VSPGF-NPNTVRACQEI--GIDIVPG-V---------------NNP----STVEAAL-EMGLTTLKFFPAE 157 (232)
T ss_dssp HHHTCSEE-ECSSC-CHHHHHHHHHH--TCEEECE-E---------------CSH----HHHHHHH-HTTCCEEEECSTT
T ss_pred HHcCCCEE-EeCCC-CHHHHHHHHHc--CCCEEcC-C---------------CCH----HHHHHHH-HcCCCEEEECcCc
Confidence 78999999 67873 34556655554 6787762 2 233 4556667 7999999999953
No 100
>3vav_A 3-methyl-2-oxobutanoate hydroxymethyltransferase; structural genomics, seattle structural genomics center for infectious disease; 1.80A {Burkholderia thailandensis} SCOP: c.1.12.8 PDB: 3ez4_A
Probab=82.86 E-value=24 Score=32.68 Aligned_cols=139 Identities=19% Similarity=0.190 Sum_probs=83.7
Q ss_pred HHHHHHHHHhCCCcEEEeeecCCCCCCCCcceeeCCCCceecHHhHHHHHHHHHHHHHcCCCccccCCCCcchHHHHHHH
Q psy15126 19 FQVIPMIRKQFPSLTIACDVCLCGYTSHGHCAIFNEDGSIHYEKTLKRLADISKAFSDAGAHIVAPSDMMDNRIHAIKQS 98 (300)
Q Consensus 19 ~~~i~~ik~~~p~l~i~~Dvclc~yt~hGHcgi~~~~g~i~nd~Tl~~l~~~A~~~A~aGad~vAPSdmMDgrv~air~a 98 (300)
..-.+.|.+..|++.|++|.=.-+| .|.+..++.+..+.++|++.|-..+-. .....-++
T Consensus 78 ~~h~~aV~r~~~~~~vvaD~pfgsY------------------~s~~~a~~~a~rl~kaGa~aVklEdg~--~~~~~i~~ 137 (275)
T 3vav_A 78 AYHTACVARAQPRALIVADLPFGTY------------------GTPADAFASAVKLMRAGAQMVKFEGGE--WLAETVRF 137 (275)
T ss_dssp HHHHHHHHHTCCSSEEEEECCTTSC------------------SSHHHHHHHHHHHHHTTCSEEEEECCG--GGHHHHHH
T ss_pred HHHHHHHHhcCCCCCEEEecCCCCC------------------CCHHHHHHHHHHHHHcCCCEEEECCch--hHHHHHHH
Confidence 3446778888899999999743222 245677788888889999999886542 12233344
Q ss_pred HhhCCCCCCcccccchhhhhcccchhhhhhhcCCCCCCCcceeeCCCCCCceEEEEeecccCCCCCCccccccCCCcccc
Q psy15126 99 LFTSRQSSTTGLLSYSAKFCSAFYGPFREAAGSAPTFGDRSCYQLPCGSKGLAIRAAVCLCGYTSHGHCAIFNEDGSIHY 178 (300)
Q Consensus 99 Ld~~g~~~~v~ImsysaK~aS~~YGPfRda~gS~~~~gdr~~yQ~~~~~~~~ai~~dvclc~yt~hGHcgi~~~~g~i~n 178 (300)
|.+.|. ++|.+-. .-|-+.-. +-+|--. | ..
T Consensus 138 l~~~GI----pv~gHlg------ltPq~~~~----------------------------~gg~~vq---------g--rt 168 (275)
T 3vav_A 138 LVERAV----PVCAHVG------LTPQSVHA----------------------------FGGFKVQ---------G--KT 168 (275)
T ss_dssp HHHTTC----CEEEEEE------SCGGGHHH----------------------------HC---CC---------C--CS
T ss_pred HHHCCC----CEEEecC------CCceEEec----------------------------cCCeEEE---------c--CC
Confidence 556777 2442211 00211100 0001000 1 13
Q ss_pred hHhHHHHHHHHHhhhcccccCCCCCccccchhhhcCCceeeccCcchHHHHHHHHHhhCCCCCEEeEec
Q psy15126 179 EKTLKRLADISKAFSDAVYVPNHNTDRFQARDVSQGADFLMVKPALPYLDIISEVKSRHPAYPLFVYQV 247 (300)
Q Consensus 179 d~tl~~l~~~a~~~a~~~~~~~~n~~~~~~~Da~~GADivmVkPsmm~ld~Ir~~~d~~~~vpi~aY~v 247 (300)
|+..+.+.+-|+++ .++|||+| |-|..+-- .++++-++. ++|++.-.+
T Consensus 169 ~~~a~~~i~rA~a~------------------~eAGA~~i-vlE~vp~~-~a~~It~~l-~iP~igIGa 216 (275)
T 3vav_A 169 EAGAAQLLRDARAV------------------EEAGAQLI-VLEAVPTL-VAAEVTREL-SIPTIGIGA 216 (275)
T ss_dssp HHHHHHHHHHHHHH------------------HHHTCSEE-EEESCCHH-HHHHHHHHC-SSCEEEESS
T ss_pred HHHHHHHHHHHHHH------------------HHcCCCEE-EecCCCHH-HHHHHHHhC-CCCEEEEcc
Confidence 44567788888888 79999998 44555543 778887776 699987755
No 101
>3eul_A Possible nitrate/nitrite response transcriptional regulatory protein NARL (DNA-binding...; central beta strand flanked by alpha helices; 1.90A {Mycobacterium tuberculosis}
Probab=82.74 E-value=5.4 Score=30.17 Aligned_cols=60 Identities=12% Similarity=0.040 Sum_probs=39.5
Q ss_pred CCCccccchhhhcCCceeeccCcc---hHHHHHHHHHhhCCCCCEEeEecccccHHHHHHHhC
Q psy15126 201 HNTDRFQARDVSQGADFLMVKPAL---PYLDIISEVKSRHPAYPLFVYQVSGEYAMLAFAAQA 260 (300)
Q Consensus 201 ~n~~~~~~~Da~~GADivmVkPsm---m~ld~Ir~~~d~~~~vpi~aY~vSgeY~~~r~Aa~~ 260 (300)
+|.......-.+...|+|++--.| .-++.++++++.++++||+..+..........+.+.
T Consensus 48 ~~~~~a~~~l~~~~~dlii~d~~l~~~~g~~~~~~l~~~~~~~~ii~~s~~~~~~~~~~~~~~ 110 (152)
T 3eul_A 48 DDGAAALELIKAHLPDVALLDYRMPGMDGAQVAAAVRSYELPTRVLLISAHDEPAIVYQALQQ 110 (152)
T ss_dssp SSHHHHHHHHHHHCCSEEEEETTCSSSCHHHHHHHHHHTTCSCEEEEEESCCCHHHHHHHHHT
T ss_pred CCHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHhcCCCCeEEEEEccCCHHHHHHHHHc
Confidence 344444443345668999887544 478999999988889999999764444444444433
No 102
>1w3i_A EDA, 2-keto-3-deoxy gluconate aldolase; archaeal metabolism, pyruvate; 1.7A {Sulfolobus solfataricus} SCOP: c.1.10.1 PDB: 1w37_A 1w3n_A* 1w3t_A* 2yda_A*
Probab=82.62 E-value=7.9 Score=34.98 Aligned_cols=78 Identities=24% Similarity=0.286 Sum_probs=50.9
Q ss_pred ccCCCcccchHhHHHHHHHHHhhhcccccCCCCCccccchhhhcCCceeeccC------cch---HHHHHHHHHhhCCCC
Q psy15126 170 FNEDGSIHYEKTLKRLADISKAFSDAVYVPNHNTDRFQARDVSQGADFLMVKP------ALP---YLDIISEVKSRHPAY 240 (300)
Q Consensus 170 ~~~~g~i~nd~tl~~l~~~a~~~a~~~~~~~~n~~~~~~~Da~~GADivmVkP------smm---~ld~Ir~~~d~~~~v 240 (300)
|++||+||.+..-+.+..+ ++.|+|-|.|.= ++. +..+++.+.+.-..
T Consensus 11 f~~dg~iD~~~l~~lv~~l----------------------i~~Gv~gl~~~GttGE~~~Ls~eEr~~v~~~~~~~~~g- 67 (293)
T 1w3i_A 11 FTKDNRIDKEKLKIHAENL----------------------IRKGIDKLFVNGTTGLGPSLSPEEKLENLKAVYDVTNK- 67 (293)
T ss_dssp BCTTSSBCHHHHHHHHHHH----------------------HHTTCCEEEESSTTTTGGGSCHHHHHHHHHHHHTTCSC-
T ss_pred CCCCCCcCHHHHHHHHHHH----------------------HHcCCCEEEECccccChhhCCHHHHHHHHHHHHHHcCC-
Confidence 4678888877764443333 789999887653 322 78889988887433
Q ss_pred CEEeEecccccHHHHHHHhCCCCCHHHHHHHHHHHHHHcCCCEEEe
Q psy15126 241 PLFVYQVSGEYAMLAFAAQAGALDLKRALMETLTCLRRGGADVIIS 286 (300)
Q Consensus 241 pi~aY~vSgeY~~~r~Aa~~~~~n~~eal~E~~~~~~r~GAD~Ii~ 286 (300)
|++= + |-.+.++++..+-.. ++.|||.+++
T Consensus 68 -viaG-v-------------g~~~t~~ai~la~~A-~~~Gadavlv 97 (293)
T 1w3i_A 68 -IIFQ-V-------------GGLNLDDAIRLAKLS-KDFDIVGIAS 97 (293)
T ss_dssp -EEEE-C-------------CCSCHHHHHHHHHHG-GGSCCSEEEE
T ss_pred -EEEe-c-------------CCCCHHHHHHHHHHH-HhcCCCEEEE
Confidence 4432 3 334667776544444 4789998887
No 103
>2r8w_A AGR_C_1641P; APC7498, dihydrodipicolinate synthase, agrobacterium tumefac C58, structural genomics, PSI-2; HET: MSE; 1.80A {Agrobacterium tumefaciens str}
Probab=82.58 E-value=11 Score=34.91 Aligned_cols=36 Identities=28% Similarity=0.424 Sum_probs=26.5
Q ss_pred hhcCCceeeccCc-c--h----HHHHHHHHHhhCCCCCEEeEec
Q psy15126 211 VSQGADFLMVKPA-L--P----YLDIISEVKSRHPAYPLFVYQV 247 (300)
Q Consensus 211 a~~GADivmVkPs-m--m----~ld~Ir~~~d~~~~vpi~aY~v 247 (300)
.+.|||.+||-|- - + .++..+++.+.. ++||+-|++
T Consensus 126 ~~~Gadavlv~~P~Y~~~s~~~l~~~f~~VA~a~-~lPiilYn~ 168 (332)
T 2r8w_A 126 EAAGADALLLAPVSYTPLTQEEAYHHFAAVAGAT-ALPLAIYNN 168 (332)
T ss_dssp HHHTCSEEEECCCCSSCCCHHHHHHHHHHHHHHC-SSCEEEECC
T ss_pred HhcCCCEEEECCCCCCCCCHHHHHHHHHHHHHhc-CCCEEEEeC
Confidence 4679999888553 1 1 466667777775 799999997
No 104
>3daq_A DHDPS, dihydrodipicolinate synthase; lysine biosynthesis, amino-ACI biosynthesis, diaminopimelate biosynthesis, lyase, schiff B; 1.45A {Staphylococcus aureus} SCOP: c.1.10.0 PDB: 3di1_A 3di0_A
Probab=82.46 E-value=8.6 Score=34.74 Aligned_cols=63 Identities=19% Similarity=0.273 Sum_probs=43.1
Q ss_pred hhcCCceeeccCc------ch---HHHHHHHHHhh-CCCCCEEeEecccccHHHHHHHhCCCCCHHHHHHHHHHHHHHcC
Q psy15126 211 VSQGADFLMVKPA------LP---YLDIISEVKSR-HPAYPLFVYQVSGEYAMLAFAAQAGALDLKRALMETLTCLRRGG 280 (300)
Q Consensus 211 a~~GADivmVkPs------mm---~ld~Ir~~~d~-~~~vpi~aY~vSgeY~~~r~Aa~~~~~n~~eal~E~~~~~~r~G 280 (300)
++.|+|-|.|.=+ +. +..+++.+.+. -.++||++- + |-.+.++++..+-.. ++.|
T Consensus 33 i~~Gv~gl~v~GttGE~~~Lt~~Er~~v~~~~~~~~~grvpviaG-v-------------g~~~t~~ai~la~~a-~~~G 97 (292)
T 3daq_A 33 LENNAQAIIVNGTTAESPTLTTDEKELILKTVIDLVDKRVPVIAG-T-------------GTNDTEKSIQASIQA-KALG 97 (292)
T ss_dssp HHTTCCEEEESSGGGTGGGSCHHHHHHHHHHHHHHHTTSSCEEEE-C-------------CCSCHHHHHHHHHHH-HHHT
T ss_pred HHcCCCEEEECccccccccCCHHHHHHHHHHHHHHhCCCCcEEEe-C-------------CcccHHHHHHHHHHH-HHcC
Confidence 6899999877633 22 77888888776 457999984 4 223677776555444 4689
Q ss_pred CCEEEecc
Q psy15126 281 ADVIISYY 288 (300)
Q Consensus 281 AD~Ii~y~ 288 (300)
||.+++-+
T Consensus 98 adavlv~~ 105 (292)
T 3daq_A 98 ADAIMLIT 105 (292)
T ss_dssp CSEEEEEC
T ss_pred CCEEEECC
Confidence 99887743
No 105
>2gzm_A Glutamate racemase; enzyme, isomerase; HET: DGL; 1.99A {Bacillus anthracis}
Probab=82.34 E-value=26 Score=30.97 Aligned_cols=67 Identities=13% Similarity=0.236 Sum_probs=44.1
Q ss_pred HHHHHHHhCCC--cEEEeeecCCCCCCCCcceeeCCCCceecHHhHHHHHHHHHHHHHcCCCccccCCCCcc--hHHHHH
Q psy15126 21 VIPMIRKQFPS--LTIACDVCLCGYTSHGHCAIFNEDGSIHYEKTLKRLADISKAFSDAGAHIVAPSDMMDN--RIHAIK 96 (300)
Q Consensus 21 ~i~~ik~~~p~--l~i~~Dvclc~yt~hGHcgi~~~~g~i~nd~Tl~~l~~~A~~~A~aGad~vAPSdmMDg--rv~air 96 (300)
..+.|++..|+ ++-++|..-.||-.. ..+.-.+++.+.+..+.+.|+++|....--.- -...+|
T Consensus 18 v~~~i~~~lP~~~~iy~~D~~~~Pyg~~------------s~~~i~~~~~~~~~~L~~~g~d~iviaCNTas~~~l~~lr 85 (267)
T 2gzm_A 18 VAKELIRQLPKERIIYLGDTARCPYGPR------------SREEVRQFTWEMTEHLLDLNIKMLVIACNTATAVVLEEMQ 85 (267)
T ss_dssp HHHHHHHHCTTSCEEEEECTTTCCCTTS------------CHHHHHHHHHHHHHHHHTTTCSEEEECCHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCCCEEEecCCCCCCCCCC------------CHHHHHHHHHHHHHHHHHCCCCEEEEeCchhhHHHHHHHH
Confidence 56889999996 455689988888432 24445566777777888899998887322111 245555
Q ss_pred HHH
Q psy15126 97 QSL 99 (300)
Q Consensus 97 ~aL 99 (300)
+.+
T Consensus 86 ~~~ 88 (267)
T 2gzm_A 86 KQL 88 (267)
T ss_dssp HHC
T ss_pred HhC
Confidence 543
No 106
>3eqz_A Response regulator; structural genomics, unknown function, PSI-2, protein struct initiative; 2.15A {Colwellia psychrerythraea} SCOP: c.23.1.0
Probab=82.22 E-value=3.1 Score=30.32 Aligned_cols=33 Identities=12% Similarity=0.345 Sum_probs=27.0
Q ss_pred CceeeccCcch---HHHHHHHHHhhCCCCCEEeEec
Q psy15126 215 ADFLMVKPALP---YLDIISEVKSRHPAYPLFVYQV 247 (300)
Q Consensus 215 ADivmVkPsmm---~ld~Ir~~~d~~~~vpi~aY~v 247 (300)
.|+|++--.|+ -++.++++++.++++||+..+.
T Consensus 47 ~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~ii~~s~ 82 (135)
T 3eqz_A 47 QDIIILDLMMPDMDGIEVIRHLAEHKSPASLILISG 82 (135)
T ss_dssp TEEEEEECCTTTTHHHHHHHHHHHTTCCCEEEEEES
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCCCCEEEEEe
Confidence 89998876544 6888999998888999998854
No 107
>2hmc_A AGR_L_411P, dihydrodipicolinate synthase; alpha-beta barrel (TIM barrel), structural genomics, PSI-2, structure initiative; HET: MSE; 1.90A {Agrobacterium tumefaciens str}
Probab=82.19 E-value=6.3 Score=36.90 Aligned_cols=78 Identities=13% Similarity=0.299 Sum_probs=48.9
Q ss_pred ccCCCcccchHhHHHHHHHHHhhhcccccCCCCCccccchhhhcCCceeeccC------cch---HHHHHHHHHhhCCCC
Q psy15126 170 FNEDGSIHYEKTLKRLADISKAFSDAVYVPNHNTDRFQARDVSQGADFLMVKP------ALP---YLDIISEVKSRHPAY 240 (300)
Q Consensus 170 ~~~~g~i~nd~tl~~l~~~a~~~a~~~~~~~~n~~~~~~~Da~~GADivmVkP------smm---~ld~Ir~~~d~~~~v 240 (300)
|++||+||.+..-+.+... ++.|+|-|.|.= ++. +..+++... . ..+
T Consensus 38 F~~dg~ID~~~l~~lv~~l----------------------i~~Gv~Gl~v~GtTGE~~~Ls~eEr~~vi~~~~-~-grv 93 (344)
T 2hmc_A 38 CRQDRTPDFDALVRKGKEL----------------------IADGMSAVVYCGSMGDWPLLTDEQRMEGVERLV-K-AGI 93 (344)
T ss_dssp BCTTSSBCHHHHHHHHHHH----------------------HHTTCCCEEESSGGGTGGGSCHHHHHHHHHHHH-H-TTC
T ss_pred CCCCCCcCHHHHHHHHHHH----------------------HHcCCCEEEeCccCcChhhCCHHHHHHHHHHHh-C-CCC
Confidence 4667888777654433323 688999987753 322 677777622 2 368
Q ss_pred CEEeEecccccHHHHHHHhCCCCCHHHHHHHHHHHHHHcCCCEEEe
Q psy15126 241 PLFVYQVSGEYAMLAFAAQAGALDLKRALMETLTCLRRGGADVIIS 286 (300)
Q Consensus 241 pi~aY~vSgeY~~~r~Aa~~~~~n~~eal~E~~~~~~r~GAD~Ii~ 286 (300)
||++= + |-.+.++++..+-... +.|||.+++
T Consensus 94 pViaG-v-------------g~~st~eai~la~~A~-~~Gadavlv 124 (344)
T 2hmc_A 94 PVIVG-T-------------GAVNTASAVAHAVHAQ-KVGAKGLMV 124 (344)
T ss_dssp CEEEE-C-------------CCSSHHHHHHHHHHHH-HHTCSEEEE
T ss_pred cEEEe-c-------------CCCCHHHHHHHHHHHH-hcCCCEEEE
Confidence 99865 2 2236667665555444 688888877
No 108
>1wa3_A 2-keto-3-deoxy-6-phosphogluconate aldolase; KDPG, pyruvate, lyase; 1.9A {Thermotoga maritima} SCOP: c.1.10.1 PDB: 1vlw_A
Probab=82.10 E-value=5.9 Score=32.85 Aligned_cols=36 Identities=14% Similarity=0.170 Sum_probs=27.2
Q ss_pred hhhcCCceeeccCcc-hHHHHHHHHHhhCCCCCEEeE
Q psy15126 210 DVSQGADFLMVKPAL-PYLDIISEVKSRHPAYPLFVY 245 (300)
Q Consensus 210 Da~~GADivmVkPsm-m~ld~Ir~~~d~~~~vpi~aY 245 (300)
-.+.|||+|.+-|.. .-+..++++++.++++||++=
T Consensus 120 a~~~Gad~vk~~~~~~~g~~~~~~l~~~~~~~pvia~ 156 (205)
T 1wa3_A 120 AMKLGHTILKLFPGEVVGPQFVKAMKGPFPNVKFVPT 156 (205)
T ss_dssp HHHTTCCEEEETTHHHHHHHHHHHHHTTCTTCEEEEB
T ss_pred HHHcCCCEEEEcCccccCHHHHHHHHHhCCCCcEEEc
Confidence 368999999766753 356778888877778998765
No 109
>3usb_A Inosine-5'-monophosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel, CBS-domain; HET: MSE IMP; 2.38A {Bacillus anthracis} PDB: 3tsd_A* 3tsb_A*
Probab=81.73 E-value=4.7 Score=39.53 Aligned_cols=56 Identities=23% Similarity=0.376 Sum_probs=41.2
Q ss_pred hhcCCceeeccCcc----hHHHHHHHHHhhCCCCCEEeEecccccHHHHHHHhCCCCCHHHHHHHHHHHHHHcCCCEEEe
Q psy15126 211 VSQGADFLMVKPAL----PYLDIISEVKSRHPAYPLFVYQVSGEYAMLAFAAQAGALDLKRALMETLTCLRRGGADVIIS 286 (300)
Q Consensus 211 a~~GADivmVkPsm----m~ld~Ir~~~d~~~~vpi~aY~vSgeY~~~r~Aa~~~~~n~~eal~E~~~~~~r~GAD~Ii~ 286 (300)
+++|+|+|.|--+. ..++.|+++++.++++||.+-.+. +. |..+.+.++|||.|.+
T Consensus 265 veaGvd~I~Id~a~g~~~~v~~~i~~i~~~~~~~~vi~g~v~---------------t~-----e~a~~~~~aGad~i~v 324 (511)
T 3usb_A 265 VKASVDAIVLDTAHGHSQGVIDKVKEVRAKYPSLNIIAGNVA---------------TA-----EATKALIEAGANVVKV 324 (511)
T ss_dssp HHTTCSEEEEECSCTTSHHHHHHHHHHHHHCTTSEEEEEEEC---------------SH-----HHHHHHHHHTCSEEEE
T ss_pred HhhccceEEecccccchhhhhhHHHHHHHhCCCceEEeeeec---------------cH-----HHHHHHHHhCCCEEEE
Confidence 68899999885442 268899999999999999976551 22 2233444789999986
No 110
>3hdg_A Uncharacterized protein; two-component sensor activity, response regulator, PSI-II, 11227F, NYSGXRC, structural genomics; 2.27A {Wolinella succinogenes} SCOP: c.23.1.0
Probab=81.58 E-value=4.9 Score=29.66 Aligned_cols=59 Identities=10% Similarity=0.224 Sum_probs=40.1
Q ss_pred hhcCCceeeccCcch---HHHHHHHHHhhCCCCCEEeEecccccHHHHHHHhCCCCCHHHHHHHHHHHHHHcCCCEEEec
Q psy15126 211 VSQGADFLMVKPALP---YLDIISEVKSRHPAYPLFVYQVSGEYAMLAFAAQAGALDLKRALMETLTCLRRGGADVIISY 287 (300)
Q Consensus 211 a~~GADivmVkPsmm---~ld~Ir~~~d~~~~vpi~aY~vSgeY~~~r~Aa~~~~~n~~eal~E~~~~~~r~GAD~Ii~y 287 (300)
.+...|+|++--.++ -++.++++++.++++||+..+... +. +. ....+ +.||+-++.|
T Consensus 48 ~~~~~dlvi~d~~l~~~~g~~~~~~l~~~~~~~~ii~~s~~~--------------~~-~~---~~~~~-~~g~~~~l~k 108 (137)
T 3hdg_A 48 GLHAPDVIITDIRMPKLGGLEMLDRIKAGGAKPYVIVISAFS--------------EM-KY---FIKAI-ELGVHLFLPK 108 (137)
T ss_dssp HHHCCSEEEECSSCSSSCHHHHHHHHHHTTCCCEEEECCCCC--------------CH-HH---HHHHH-HHCCSEECCS
T ss_pred hccCCCEEEEeCCCCCCCHHHHHHHHHhcCCCCcEEEEecCc--------------Ch-HH---HHHHH-hCCcceeEcC
Confidence 345679998886544 688999999888899999885422 11 11 11223 6788888888
Q ss_pred c
Q psy15126 288 Y 288 (300)
Q Consensus 288 ~ 288 (300)
|
T Consensus 109 P 109 (137)
T 3hdg_A 109 P 109 (137)
T ss_dssp S
T ss_pred C
Confidence 7
No 111
>3lua_A Response regulator receiver protein; two-component signal transduction system, histidine kinase, phosphorelay, receiver domain, nysgxrc; 2.40A {Clostridium thermocellum}
Probab=81.45 E-value=9.4 Score=28.28 Aligned_cols=57 Identities=14% Similarity=0.194 Sum_probs=39.0
Q ss_pred cCCceeeccCcch----HHHHHHHHHh--hCCCCCEEeEecccccHHHHHHHhCCCCCHHHHHHHHHHHHHHcCCCEEEe
Q psy15126 213 QGADFLMVKPALP----YLDIISEVKS--RHPAYPLFVYQVSGEYAMLAFAAQAGALDLKRALMETLTCLRRGGADVIIS 286 (300)
Q Consensus 213 ~GADivmVkPsmm----~ld~Ir~~~d--~~~~vpi~aY~vSgeY~~~r~Aa~~~~~n~~eal~E~~~~~~r~GAD~Ii~ 286 (300)
.-.|+|++--.|+ -++.++++++ .++++||+..+... +. + ......+.||+-.+.
T Consensus 49 ~~~dlvi~D~~l~~~~~g~~~~~~l~~~~~~~~~~ii~ls~~~--------------~~-~----~~~~~~~~g~~~~l~ 109 (140)
T 3lua_A 49 DSITLIIMDIAFPVEKEGLEVLSAIRNNSRTANTPVIIATKSD--------------NP-G----YRHAALKFKVSDYIL 109 (140)
T ss_dssp CCCSEEEECSCSSSHHHHHHHHHHHHHSGGGTTCCEEEEESCC--------------CH-H----HHHHHHHSCCSEEEE
T ss_pred CCCcEEEEeCCCCCCCcHHHHHHHHHhCcccCCCCEEEEeCCC--------------CH-H----HHHHHHHcCCCEEEE
Confidence 5679998875544 5788899888 67899999986422 11 1 111222678888888
Q ss_pred cc
Q psy15126 287 YY 288 (300)
Q Consensus 287 y~ 288 (300)
||
T Consensus 110 KP 111 (140)
T 3lua_A 110 KP 111 (140)
T ss_dssp SS
T ss_pred CC
Confidence 87
No 112
>1o5k_A DHDPS, dihydrodipicolinate synthase; TM1521, structural genomics, J protein structure initiative, joint center for structural G lyase; HET: MCL; 1.80A {Thermotoga maritima} SCOP: c.1.10.1 PDB: 3pb2_A 3pb0_A
Probab=80.54 E-value=14 Score=33.62 Aligned_cols=36 Identities=22% Similarity=0.338 Sum_probs=26.2
Q ss_pred hhcCCceeeccCc-c--h----HHHHHHHHHhhCCCCCEEeEec
Q psy15126 211 VSQGADFLMVKPA-L--P----YLDIISEVKSRHPAYPLFVYQV 247 (300)
Q Consensus 211 a~~GADivmVkPs-m--m----~ld~Ir~~~d~~~~vpi~aY~v 247 (300)
.+.|||.+||-|- - + .+...+++.+.. ++||+-|++
T Consensus 104 ~~~Gadavlv~~P~y~~~s~~~l~~~f~~va~a~-~lPiilYn~ 146 (306)
T 1o5k_A 104 EKLGANGVLVVTPYYNKPTQEGLYQHYKYISERT-DLGIVVYNV 146 (306)
T ss_dssp HHHTCSEEEEECCCSSCCCHHHHHHHHHHHHTTC-SSCEEEEEC
T ss_pred HhcCCCEEEECCCCCCCCCHHHHHHHHHHHHHhC-CCCEEEEeC
Confidence 4679999888543 1 1 466667777765 799999997
No 113
>3r2g_A Inosine 5'-monophosphate dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.94A {Legionella pneumophila subsp}
Probab=80.40 E-value=3.6 Score=39.15 Aligned_cols=56 Identities=21% Similarity=0.215 Sum_probs=38.6
Q ss_pred hhcCCceeecc--Cc--chHHHHHHHHHhhCCCCCEEeEecccccHHHHHHHhCCCCCHHHHHHHHHHHHHHcCCCEEEe
Q psy15126 211 VSQGADFLMVK--PA--LPYLDIISEVKSRHPAYPLFVYQVSGEYAMLAFAAQAGALDLKRALMETLTCLRRGGADVIIS 286 (300)
Q Consensus 211 a~~GADivmVk--Ps--mm~ld~Ir~~~d~~~~vpi~aY~vSgeY~~~r~Aa~~~~~n~~eal~E~~~~~~r~GAD~Ii~ 286 (300)
+++|+|+|.|- .. ...++.|+.+++.++++||++=++ .+.++ + +.+.++|||.|.+
T Consensus 109 ~~aGvdvI~id~a~G~~~~~~e~I~~ir~~~~~~~Vi~G~V---------------~T~e~----A-~~a~~aGaD~I~V 168 (361)
T 3r2g_A 109 RDAGADFFCVDVAHAHAKYVGKTLKSLRQLLGSRCIMAGNV---------------ATYAG----A-DYLASCGADIIKA 168 (361)
T ss_dssp HHTTCCEEEEECSCCSSHHHHHHHHHHHHHHTTCEEEEEEE---------------CSHHH----H-HHHHHTTCSEEEE
T ss_pred HHcCCCEEEEeCCCCCcHhHHHHHHHHHHhcCCCeEEEcCc---------------CCHHH----H-HHHHHcCCCEEEE
Confidence 67899998772 22 225788999998888999998544 23322 2 2333789999987
No 114
>3lab_A Putative KDPG (2-keto-3-deoxy-6-phosphogluconate) aldolase; unknown function, aldolase superfamily, class I aldolase, KDPG aldolase domain; 1.84A {Oleispira antarctica} PDB: 3vcr_A
Probab=80.37 E-value=5.7 Score=35.53 Aligned_cols=56 Identities=20% Similarity=0.341 Sum_probs=38.9
Q ss_pred hhcCCceeeccCcchHHHHHHHHHhhCCCC------CEEeEecccccHHHHHHHhCCCCCHHHHHHHHHHHHHHcCCCEE
Q psy15126 211 VSQGADFLMVKPALPYLDIISEVKSRHPAY------PLFVYQVSGEYAMLAFAAQAGALDLKRALMETLTCLRRGGADVI 284 (300)
Q Consensus 211 a~~GADivmVkPsmm~ld~Ir~~~d~~~~v------pi~aY~vSgeY~~~r~Aa~~~~~n~~eal~E~~~~~~r~GAD~I 284 (300)
+++||++| |.|.. --++|+..++. ++ |++.= + ... -|.+..+ +.|+|+|
T Consensus 82 i~AGA~fi-vsP~~-~~evi~~~~~~--~v~~~~~~~~~PG-~---------------~Tp----tE~~~A~-~~Gad~v 136 (217)
T 3lab_A 82 IDAGAQFI-VSPGL-TPELIEKAKQV--KLDGQWQGVFLPG-V---------------ATA----SEVMIAA-QAGITQL 136 (217)
T ss_dssp HHHTCSEE-EESSC-CHHHHHHHHHH--HHHCSCCCEEEEE-E---------------CSH----HHHHHHH-HTTCCEE
T ss_pred HHcCCCEE-EeCCC-cHHHHHHHHHc--CCCccCCCeEeCC-C---------------CCH----HHHHHHH-HcCCCEE
Confidence 78999998 78983 34556666653 46 77763 2 344 4555567 7999999
Q ss_pred EecchHH
Q psy15126 285 ISYYTPR 291 (300)
Q Consensus 285 i~y~A~~ 291 (300)
=+.|+..
T Consensus 137 K~FPa~~ 143 (217)
T 3lab_A 137 KCFPASA 143 (217)
T ss_dssp EETTTTT
T ss_pred EECcccc
Confidence 9998653
No 115
>2rfg_A Dihydrodipicolinate synthase; beta barrel, amino-acid biosynthesis, diaminopimelate biosyn lyase, lysine biosynthesis, schiff base; 1.50A {Hahella chejuensis}
Probab=80.19 E-value=17 Score=32.98 Aligned_cols=36 Identities=22% Similarity=0.428 Sum_probs=26.5
Q ss_pred hhcCCceeeccCcc---h----HHHHHHHHHhhCCCCCEEeEec
Q psy15126 211 VSQGADFLMVKPAL---P----YLDIISEVKSRHPAYPLFVYQV 247 (300)
Q Consensus 211 a~~GADivmVkPsm---m----~ld~Ir~~~d~~~~vpi~aY~v 247 (300)
.+.|||.+||-|-. + .++..+++.+.. ++||+-|++
T Consensus 92 ~~~Gadavlv~~P~y~~~s~~~l~~~f~~va~a~-~lPiilYn~ 134 (297)
T 2rfg_A 92 QQAGADAVLCVAGYYNRPSQEGLYQHFKMVHDAI-DIPIIVYNI 134 (297)
T ss_dssp HHHTCSEEEECCCTTTCCCHHHHHHHHHHHHHHC-SSCEEEEEC
T ss_pred HhcCCCEEEEcCCCCCCCCHHHHHHHHHHHHHhc-CCCEEEEeC
Confidence 46799999886531 1 466667777775 799999997
No 116
>2pl1_A Transcriptional regulatory protein PHOP; CHEY-like fold, response regulator, beryllium fluoride, transcription factor, activated, virulence; 1.90A {Escherichia coli} SCOP: c.23.1.1 PDB: 2pkx_A
Probab=80.02 E-value=14 Score=26.33 Aligned_cols=58 Identities=22% Similarity=0.328 Sum_probs=38.9
Q ss_pred cCCceeeccCcch---HHHHHHHHHhhCCCCCEEeEecccccHHHHHHHhCCCCCHHHHHHHHHHHHHHcCCCEEEecch
Q psy15126 213 QGADFLMVKPALP---YLDIISEVKSRHPAYPLFVYQVSGEYAMLAFAAQAGALDLKRALMETLTCLRRGGADVIISYYT 289 (300)
Q Consensus 213 ~GADivmVkPsmm---~ld~Ir~~~d~~~~vpi~aY~vSgeY~~~r~Aa~~~~~n~~eal~E~~~~~~r~GAD~Ii~y~A 289 (300)
...|++++-..|+ -++.++++++..+++|++..+....... ....+ +.||+-.++||-
T Consensus 43 ~~~dlil~D~~l~~~~g~~~~~~l~~~~~~~~ii~~s~~~~~~~------------------~~~~~-~~g~~~~l~kp~ 103 (121)
T 2pl1_A 43 HIPDIAIVDLGLPDEDGLSLIRRWRSNDVSLPILVLTARESWQD------------------KVEVL-SAGADDYVTKPF 103 (121)
T ss_dssp SCCSEEEECSCCSSSCHHHHHHHHHHTTCCSCEEEEESCCCHHH------------------HHHHH-HTTCSEEEESSC
T ss_pred cCCCEEEEecCCCCCCHHHHHHHHHhcCCCCCEEEEecCCCHHH------------------HHHHH-HcCccceEECCC
Confidence 3568888875543 6788888888778899999865322111 12233 678888888873
No 117
>2qr3_A Two-component system response regulator; structural genomics, signal receiver, PSI-2, protein structu initiative; 1.80A {Bacteroides fragilis}
Probab=80.02 E-value=11 Score=27.64 Aligned_cols=36 Identities=11% Similarity=0.256 Sum_probs=26.6
Q ss_pred hcCCceeeccC--------cchHHHHHHHHHhhCCCCCEEeEec
Q psy15126 212 SQGADFLMVKP--------ALPYLDIISEVKSRHPAYPLFVYQV 247 (300)
Q Consensus 212 ~~GADivmVkP--------smm~ld~Ir~~~d~~~~vpi~aY~v 247 (300)
+...|+|++-- .+.-++.++++++.++++||+..+.
T Consensus 45 ~~~~dlvi~d~~~~~~~~~~~~g~~~~~~l~~~~~~~~ii~ls~ 88 (140)
T 2qr3_A 45 EENPEVVLLDMNFTSGINNGNEGLFWLHEIKRQYRDLPVVLFTA 88 (140)
T ss_dssp HSCEEEEEEETTTTC-----CCHHHHHHHHHHHCTTCCEEEEEE
T ss_pred cCCCCEEEEeCCcCCCCCCCccHHHHHHHHHhhCcCCCEEEEEC
Confidence 34468887754 3336788888888888999999965
No 118
>3hdv_A Response regulator; PSI-II, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.09A {Pseudomonas putida} SCOP: c.23.1.0
Probab=79.86 E-value=7.3 Score=28.63 Aligned_cols=58 Identities=12% Similarity=0.168 Sum_probs=39.3
Q ss_pred hcC-CceeeccCcch---HHHHHHHHHhh-CCCCCEEeEecccccHHHHHHHhCCCCCHHHHHHHHHHHHHHcCCCEEEe
Q psy15126 212 SQG-ADFLMVKPALP---YLDIISEVKSR-HPAYPLFVYQVSGEYAMLAFAAQAGALDLKRALMETLTCLRRGGADVIIS 286 (300)
Q Consensus 212 ~~G-ADivmVkPsmm---~ld~Ir~~~d~-~~~vpi~aY~vSgeY~~~r~Aa~~~~~n~~eal~E~~~~~~r~GAD~Ii~ 286 (300)
+.. .|+|++--.|+ -++.++++++. ++++||+..+....... ....+ +.||+-.+.
T Consensus 49 ~~~~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~~ii~~s~~~~~~~------------------~~~~~-~~g~~~~l~ 109 (136)
T 3hdv_A 49 YQKRIGLMITDLRMQPESGLDLIRTIRASERAALSIIVVSGDTDVEE------------------AVDVM-HLGVVDFLL 109 (136)
T ss_dssp HCTTEEEEEECSCCSSSCHHHHHHHHHTSTTTTCEEEEEESSCCHHH------------------HHHHH-HTTCSEEEE
T ss_pred hCCCCcEEEEeccCCCCCHHHHHHHHHhcCCCCCCEEEEeCCCChHH------------------HHHHH-hCCcceEEe
Confidence 344 78888875543 78999999887 78999999865222111 11223 678888888
Q ss_pred cc
Q psy15126 287 YY 288 (300)
Q Consensus 287 y~ 288 (300)
||
T Consensus 110 KP 111 (136)
T 3hdv_A 110 KP 111 (136)
T ss_dssp SS
T ss_pred CC
Confidence 87
No 119
>2hjp_A Phosphonopyruvate hydrolase; phosporus-Ca cleavage, PEP mutase/isocitrate lyase superfamily; HET: XYS PPR; 1.90A {Variovorax SP} PDB: 2dua_A* 2hrw_A
Probab=79.84 E-value=3 Score=38.58 Aligned_cols=81 Identities=20% Similarity=0.187 Sum_probs=52.2
Q ss_pred HHHHHHHHHhhhcccccCCCCCccccchhhhcCCceeeccCc-chHHHHHHHHHhhCC-CCCEEeEecccccHHHHHHHh
Q psy15126 182 LKRLADISKAFSDAVYVPNHNTDRFQARDVSQGADFLMVKPA-LPYLDIISEVKSRHP-AYPLFVYQVSGEYAMLAFAAQ 259 (300)
Q Consensus 182 l~~l~~~a~~~a~~~~~~~~n~~~~~~~Da~~GADivmVkPs-mm~ld~Ir~~~d~~~-~vpi~aY~vSgeY~~~r~Aa~ 259 (300)
++.+.+-|+++ .++|||+|++ |+ .+-.+.++++-++.+ .+|+++=-+++..-.++.-.+
T Consensus 165 ~~~ai~Ra~ay------------------~eAGAd~i~~-e~~~~~~~~~~~i~~~~~~~vP~i~n~~~~~~~~~~eL~~ 225 (290)
T 2hjp_A 165 QQEAVRRGQAY------------------EEAGADAILI-HSRQKTPDEILAFVKSWPGKVPLVLVPTAYPQLTEADIAA 225 (290)
T ss_dssp HHHHHHHHHHH------------------HHTTCSEEEE-CCCCSSSHHHHHHHHHCCCSSCEEECGGGCTTSCHHHHHT
T ss_pred HHHHHHHHHHH------------------HHcCCcEEEe-CCCCCCHHHHHHHHHHcCCCCCEEEeccCCCCCCHHHHHh
Confidence 55566667777 6999999965 44 555677777777752 299997322333334556666
Q ss_pred CC-----------CCCHHHHHHHHHHHHHHcCC
Q psy15126 260 AG-----------ALDLKRALMETLTCLRRGGA 281 (300)
Q Consensus 260 ~~-----------~~n~~eal~E~~~~~~r~GA 281 (300)
+| +.-.-.++++++..+++.|-
T Consensus 226 lG~v~~v~~~~~~~raa~~a~~~~~~~i~~~g~ 258 (290)
T 2hjp_A 226 LSKVGIVIYGNHAIRAAVGAVREVFARIRRDGG 258 (290)
T ss_dssp CTTEEEEEECSHHHHHHHHHHHHHHHHHHHHTS
T ss_pred cCCeeEEEechHHHHHHHHHHHHHHHHHHHcCC
Confidence 77 11234567788888877663
No 120
>2qxy_A Response regulator; regulation of transcription, NYSGXRC, protein structure initiative II (PSI II), structural genomics; 1.95A {Thermotoga maritima}
Probab=79.60 E-value=4.7 Score=29.95 Aligned_cols=36 Identities=17% Similarity=0.322 Sum_probs=27.8
Q ss_pred hcCCceeeccC--cchHHHHHHHHHhhCCCCCEEeEec
Q psy15126 212 SQGADFLMVKP--ALPYLDIISEVKSRHPAYPLFVYQV 247 (300)
Q Consensus 212 ~~GADivmVkP--smm~ld~Ir~~~d~~~~vpi~aY~v 247 (300)
+...|+|++-- .+.-++.++++++.++++||+..+.
T Consensus 46 ~~~~dlvi~d~~~~~~g~~~~~~l~~~~~~~pii~ls~ 83 (142)
T 2qxy_A 46 REKIDLVFVDVFEGEESLNLIRRIREEFPDTKVAVLSA 83 (142)
T ss_dssp TSCCSEEEEECTTTHHHHHHHHHHHHHCTTCEEEEEES
T ss_pred ccCCCEEEEeCCCCCcHHHHHHHHHHHCCCCCEEEEEC
Confidence 34579998874 3336788899888888999999865
No 121
>3tsm_A IGPS, indole-3-glycerol phosphate synthase; structural genomics, ssgcid, seattle structural GE center for infectious disease, lyase; 2.15A {Brucella melitensis} SCOP: c.1.2.0
Probab=79.54 E-value=23 Score=32.30 Aligned_cols=183 Identities=15% Similarity=0.132 Sum_probs=105.4
Q ss_pred CcEEEeeecCCCCCCCCcceeeCCCCceecHHhHHHHHHHHHHHHHcCCCccccC---CCCcchHHHHHHHHhhCCCCCC
Q psy15126 31 SLTIACDVCLCGYTSHGHCAIFNEDGSIHYEKTLKRLADISKAFSDAGAHIVAPS---DMMDNRIHAIKQSLFTSRQSST 107 (300)
Q Consensus 31 ~l~i~~Dvclc~yt~hGHcgi~~~~g~i~nd~Tl~~l~~~A~~~A~aGad~vAPS---dmMDgrv~air~aLd~~g~~~~ 107 (300)
.+.||+.+-=.+= | -|++. .+.. .+++|..+.++||+.|.-- .-..|....+++.-..- +
T Consensus 58 ~~~vIaE~KraSP-S---kG~i~------~~~d---p~~~A~~y~~~GA~~IsVltd~~~f~Gs~~~L~~ir~~v----~ 120 (272)
T 3tsm_A 58 QFALIAEIKKASP-S---KGLIR------PDFD---PPALAKAYEEGGAACLSVLTDTPSFQGAPEFLTAARQAC----S 120 (272)
T ss_dssp CCEEEEEECSEET-T---TEESC------SSCC---HHHHHHHHHHTTCSEEEEECCSTTTCCCHHHHHHHHHTS----S
T ss_pred CceEEEEeccCCC-C---CCccC------CCCC---HHHHHHHHHHCCCCEEEEeccccccCCCHHHHHHHHHhc----C
Confidence 4677777655431 1 13343 3332 4678899999999998762 23347777776664333 3
Q ss_pred cccccchhhhhcccchhhhhhhcCCCCCCCcceeeCCCCCCceEEEEeecccCCCCCCccccccCCCcccchHhHHHHHH
Q psy15126 108 TGLLSYSAKFCSAFYGPFREAAGSAPTFGDRSCYQLPCGSKGLAIRAAVCLCGYTSHGHCAIFNEDGSIHYEKTLKRLAD 187 (300)
Q Consensus 108 v~ImsysaK~aS~~YGPfRda~gS~~~~gdr~~yQ~~~~~~~~ai~~dvclc~yt~hGHcgi~~~~g~i~nd~tl~~l~~ 187 (300)
++|+ .|- |. +..||+.. .-..|=++|+- .-....+++++.|.+
T Consensus 121 lPVl---~Kd---fi---------------~d~~qi~e---------------a~~~GAD~VlL-i~a~L~~~~l~~l~~ 163 (272)
T 3tsm_A 121 LPAL---RKD---FL---------------FDPYQVYE---------------ARSWGADCILI-IMASVDDDLAKELED 163 (272)
T ss_dssp SCEE---EES---CC---------------CSTHHHHH---------------HHHTTCSEEEE-ETTTSCHHHHHHHHH
T ss_pred CCEE---ECC---cc---------------CCHHHHHH---------------HHHcCCCEEEE-cccccCHHHHHHHHH
Confidence 4554 111 11 23334321 01123333321 012446789999999
Q ss_pred HHHhhhcccccCCCCCccccchhhhcCCceeeccCcc-h----HHHHHHHHHhhCC-CCCEEeEecccccHHHHHHHhCC
Q psy15126 188 ISKAFSDAVYVPNHNTDRFQARDVSQGADFLMVKPAL-P----YLDIISEVKSRHP-AYPLFVYQVSGEYAMLAFAAQAG 261 (300)
Q Consensus 188 ~a~~~a~~~~~~~~n~~~~~~~Da~~GADivmVkPsm-m----~ld~Ir~~~d~~~-~vpi~aY~vSgeY~~~r~Aa~~~ 261 (300)
.+..+---+.+..||.... .+=.+.|+|+|-|-+.. . -++..+++.+..| ++|+.+= ||-.
T Consensus 164 ~a~~lGl~~lvevh~~eEl-~~A~~~ga~iIGinnr~l~t~~~dl~~~~~L~~~ip~~~~vIae--sGI~---------- 230 (272)
T 3tsm_A 164 TAFALGMDALIEVHDEAEM-ERALKLSSRLLGVNNRNLRSFEVNLAVSERLAKMAPSDRLLVGE--SGIF---------- 230 (272)
T ss_dssp HHHHTTCEEEEEECSHHHH-HHHTTSCCSEEEEECBCTTTCCBCTHHHHHHHHHSCTTSEEEEE--SSCC----------
T ss_pred HHHHcCCeEEEEeCCHHHH-HHHHhcCCCEEEECCCCCccCCCChHHHHHHHHhCCCCCcEEEE--CCCC----------
Confidence 9988765666777886654 33457999999887652 1 4666777776654 5777654 4433
Q ss_pred CCCHHHHHHHHHHHHHHcCCCEEEec
Q psy15126 262 ALDLKRALMETLTCLRRGGADVIISY 287 (300)
Q Consensus 262 ~~n~~eal~E~~~~~~r~GAD~Ii~y 287 (300)
+.++ +..+++.|||-+++-
T Consensus 231 --t~ed-----v~~l~~~Ga~gvLVG 249 (272)
T 3tsm_A 231 --THED-----CLRLEKSGIGTFLIG 249 (272)
T ss_dssp --SHHH-----HHHHHTTTCCEEEEC
T ss_pred --CHHH-----HHHHHHcCCCEEEEc
Confidence 3322 223446788888874
No 122
>3snk_A Response regulator CHEY-like protein; P-loop containing nucleoside triphosphate hydrolases, struct genomics; 2.02A {Mesorhizobium loti}
Probab=79.12 E-value=6.2 Score=29.22 Aligned_cols=60 Identities=12% Similarity=-0.010 Sum_probs=40.1
Q ss_pred hhcCCceeeccCcch---HHHHHHHHHhhCCCCCEEeEecccccHHHHHHHhCCCCCHHHHHHHHHHHHHHcCCCEEEec
Q psy15126 211 VSQGADFLMVKPALP---YLDIISEVKSRHPAYPLFVYQVSGEYAMLAFAAQAGALDLKRALMETLTCLRRGGADVIISY 287 (300)
Q Consensus 211 a~~GADivmVkPsmm---~ld~Ir~~~d~~~~vpi~aY~vSgeY~~~r~Aa~~~~~n~~eal~E~~~~~~r~GAD~Ii~y 287 (300)
.+...|+|++--.|+ -++.++++++..+++||+..+... +.+ +....+ +.||+-.+.|
T Consensus 56 ~~~~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~ii~~s~~~--------------~~~----~~~~~~-~~g~~~~l~K 116 (135)
T 3snk_A 56 ADTRPGIVILDLGGGDLLGKPGIVEARALWATVPLIAVSDEL--------------TSE----QTRVLV-RMNASDWLHK 116 (135)
T ss_dssp TTCCCSEEEEEEETTGGGGSTTHHHHHGGGTTCCEEEEESCC--------------CHH----HHHHHH-HTTCSEEEES
T ss_pred hccCCCEEEEeCCCCCchHHHHHHHHHhhCCCCcEEEEeCCC--------------CHH----HHHHHH-HcCcHhhccC
Confidence 345578888765443 578888888887899999985421 221 112234 6899999999
Q ss_pred ch
Q psy15126 288 YT 289 (300)
Q Consensus 288 ~A 289 (300)
|-
T Consensus 117 P~ 118 (135)
T 3snk_A 117 PL 118 (135)
T ss_dssp SC
T ss_pred CC
Confidence 73
No 123
>3qfw_A Ribulose-1,5-bisphosphate carboxylase/oxygenase L subunit; structural genomics, PSI-2, protein structure initiative; 1.79A {Rhodopseudomonas palustris}
Probab=79.07 E-value=8.5 Score=37.16 Aligned_cols=134 Identities=15% Similarity=0.189 Sum_probs=80.0
Q ss_pred HHhHHHHHHHHHHHHHcCCCccc--------cCCCCcchHHHHHHHHhhCCCCCCcccccchhhhhcccchhhhhhhcCC
Q psy15126 61 EKTLKRLADISKAFSDAGAHIVA--------PSDMMDNRIHAIKQSLFTSRQSSTTGLLSYSAKFCSAFYGPFREAAGSA 132 (300)
Q Consensus 61 d~Tl~~l~~~A~~~A~aGad~vA--------PSdmMDgrv~air~aLd~~g~~~~v~ImsysaK~aS~~YGPfRda~gS~ 132 (300)
-.|.+.+++++.+++..|.|+|= |-.-+..|+....++++++.- .
T Consensus 142 GLs~~~~a~~~ye~~~GGlDfiKDDE~l~~qpf~p~~eR~~~~~eai~ra~~-e-------------------------- 194 (378)
T 3qfw_A 142 GLSPAALASIAHQLALGGVDLIKDDHGLADQAFSPFAERAAAVGKAVREANA-A-------------------------- 194 (378)
T ss_dssp TSCHHHHHHHHHHHHHTTCSEEEECTTCSSCTTSCHHHHHHHHHHHHHHHHH-H--------------------------
T ss_pred cCCHHHHHHHHHHHHhcCCCcccCCcCcCCCCcccHHHHHHHHHHHHHHHHH-h--------------------------
Confidence 56888999999999999999872 233355666666666655422 1
Q ss_pred CCCCCcceeeCCCCCCceEEEEeecccCCCCCCccccccCCCcccchHhHHHHHHHHHhhhcccccCCCCCccccchhhh
Q psy15126 133 PTFGDRSCYQLPCGSKGLAIRAAVCLCGYTSHGHCAIFNEDGSIHYEKTLKRLADISKAFSDAVYVPNHNTDRFQARDVS 212 (300)
Q Consensus 133 ~~~gdr~~yQ~~~~~~~~ai~~dvclc~yt~hGHcgi~~~~g~i~nd~tl~~l~~~a~~~a~~~~~~~~n~~~~~~~Da~ 212 (300)
-|.++.|..+-. + +.++.++| |.-- .+
T Consensus 195 --TGe~k~y~~NiT---------------------------a--~~~em~~r----a~~a------------------~e 221 (378)
T 3qfw_A 195 --RGGRTLYAPNIS---------------------------G--TLDDMRRQ----LGVI------------------RD 221 (378)
T ss_dssp --HTCCCEEECBCC---------------------------S--SHHHHHHH----HHHH------------------HH
T ss_pred --hCCccEEEeecC---------------------------C--CHHHHHHH----HHHH------------------HH
Confidence 144666665532 1 12333333 2221 57
Q ss_pred cCCceeeccCcchHHHHHHHHHhhCCCCCEEeEecccccHHHHHHHhCCCCCHHHHHHHHHHHHHHcCCCEEEe
Q psy15126 213 QGADFLMVKPALPYLDIISEVKSRHPAYPLFVYQVSGEYAMLAFAAQAGALDLKRALMETLTCLRRGGADVIIS 286 (300)
Q Consensus 213 ~GADivmVkPsmm~ld~Ir~~~d~~~~vpi~aY~vSgeY~~~r~Aa~~~~~n~~eal~E~~~~~~r~GAD~Ii~ 286 (300)
+|+.++||-+-..=..+++.+.+.+|++||.++-+ ..|. .|. +.. .++-.+..+ +|+|.|.+
T Consensus 222 ~G~~~~mvd~~~~G~~a~~~l~r~~p~~~lh~HrA--~~ga------hGi-~~~-~vl~Kl~RL--aG~D~ih~ 283 (378)
T 3qfw_A 222 EGIGAVLVAPMIVGVSNFHAIVKEAAGLVVVAHPA--MAGA------AKI-AAP-LLLGRLFRL--FGADATVF 283 (378)
T ss_dssp HTCCEEEECHHHHCHHHHHHHHTTCTTCEEEECCT--TC---------CB-CHH-HHHTHHHHH--HTCSEEEE
T ss_pred cCCCEEEEeccccCHHHHHHHHHhCCCCEEEeCcC--chhh------ccC-cHH-HHHHHHHHH--hCCCccee
Confidence 89999999875333556666665677999999966 2222 232 211 123333344 79999875
No 124
>2r91_A 2-keto-3-deoxy-(6-phospho-)gluconate aldolase; TIM barrel, thermophilic, lyase; 2.00A {Thermoproteus tenax} PDB: 2r94_A
Probab=78.98 E-value=13 Score=33.42 Aligned_cols=77 Identities=23% Similarity=0.361 Sum_probs=50.1
Q ss_pred ccCCCcccchHhHHHHHHHHHhhhcccccCCCCCccccchhhhcCCceeeccC------cch---HHHHHHHHHhhCCCC
Q psy15126 170 FNEDGSIHYEKTLKRLADISKAFSDAVYVPNHNTDRFQARDVSQGADFLMVKP------ALP---YLDIISEVKSRHPAY 240 (300)
Q Consensus 170 ~~~~g~i~nd~tl~~l~~~a~~~a~~~~~~~~n~~~~~~~Da~~GADivmVkP------smm---~ld~Ir~~~d~~~~v 240 (300)
|+ ||+||.+..-+.+... ++.|+|-|.|.= ++. +..+++.+.+.-..
T Consensus 11 f~-dg~iD~~~l~~lv~~l----------------------i~~Gv~gl~v~GttGE~~~Ls~~Er~~v~~~~~~~~~g- 66 (286)
T 2r91_A 11 FR-GGRLDPELFANHVKNI----------------------TSKGVDVVFVAGTTGLGPALSLQEKMELTDAATSAARR- 66 (286)
T ss_dssp EE-TTEECHHHHHHHHHHH----------------------HHTTCCEEEETSTTTTGGGSCHHHHHHHHHHHHHHCSS-
T ss_pred cC-CCccCHHHHHHHHHHH----------------------HHCCCCEEEECccccChhhCCHHHHHHHHHHHHHHhCC-
Confidence 46 7888777654443333 788999987753 332 78999998887534
Q ss_pred CEEeEecccccHHHHHHHhCCCCCHHHHHHHHHHHHHHcCCCEEEe
Q psy15126 241 PLFVYQVSGEYAMLAFAAQAGALDLKRALMETLTCLRRGGADVIIS 286 (300)
Q Consensus 241 pi~aY~vSgeY~~~r~Aa~~~~~n~~eal~E~~~~~~r~GAD~Ii~ 286 (300)
|++- + |-.+.++++..+-.. ++.|||.+++
T Consensus 67 -vi~G-v-------------g~~~t~~ai~la~~A-~~~Gadavlv 96 (286)
T 2r91_A 67 -VIVQ-V-------------ASLNADEAIALAKYA-ESRGAEAVAS 96 (286)
T ss_dssp -EEEE-C-------------CCSSHHHHHHHHHHH-HHTTCSEEEE
T ss_pred -EEEe-e-------------CCCCHHHHHHHHHHH-HhcCCCEEEE
Confidence 4433 2 334667776554444 4789999887
No 125
>3gl9_A Response regulator; beta-sheet, surrounded by alpha helices, BOTH sides, signaling protein; HET: BFD; 1.80A {Thermotoga maritima} SCOP: c.23.1.0 PDB: 3dgf_C 3dge_C
Probab=78.69 E-value=17 Score=26.59 Aligned_cols=59 Identities=14% Similarity=0.229 Sum_probs=39.5
Q ss_pred hcCCceeeccCcch---HHHHHHHHHhh--CCCCCEEeEecccccHHHHHHHhCCCCCHHHHHHHHHHHHHHcCCCEEEe
Q psy15126 212 SQGADFLMVKPALP---YLDIISEVKSR--HPAYPLFVYQVSGEYAMLAFAAQAGALDLKRALMETLTCLRRGGADVIIS 286 (300)
Q Consensus 212 ~~GADivmVkPsmm---~ld~Ir~~~d~--~~~vpi~aY~vSgeY~~~r~Aa~~~~~n~~eal~E~~~~~~r~GAD~Ii~ 286 (300)
+...|+|++--.|+ -++.+++++.. ++++||+..+..+.... ....+ +.||+-.++
T Consensus 44 ~~~~dlvllD~~~p~~~g~~~~~~l~~~~~~~~~pii~~s~~~~~~~------------------~~~~~-~~Ga~~~l~ 104 (122)
T 3gl9_A 44 EFTPDLIVLXIMMPVMDGFTVLKKLQEKEEWKRIPVIVLTAKGGEED------------------ESLAL-SLGARKVMR 104 (122)
T ss_dssp TBCCSEEEECSCCSSSCHHHHHHHHHTSTTTTTSCEEEEESCCSHHH------------------HHHHH-HTTCSEEEE
T ss_pred hcCCCEEEEeccCCCCcHHHHHHHHHhcccccCCCEEEEecCCchHH------------------HHHHH-hcChhhhcc
Confidence 45679988875544 68888888765 57899999865222111 11233 689998899
Q ss_pred cch
Q psy15126 287 YYT 289 (300)
Q Consensus 287 y~A 289 (300)
||-
T Consensus 105 KP~ 107 (122)
T 3gl9_A 105 KPF 107 (122)
T ss_dssp SSC
T ss_pred CCC
Confidence 884
No 126
>2rjn_A Response regulator receiver:metal-dependent phosphohydrolase, HD subdomain; structural genomics, oceanospirillum SP. MED92; 2.10A {Neptuniibacter caesariensis}
Probab=78.64 E-value=17 Score=27.34 Aligned_cols=37 Identities=8% Similarity=0.040 Sum_probs=28.6
Q ss_pred hcCCceeeccCcc---hHHHHHHHHHhhCCCCCEEeEecc
Q psy15126 212 SQGADFLMVKPAL---PYLDIISEVKSRHPAYPLFVYQVS 248 (300)
Q Consensus 212 ~~GADivmVkPsm---m~ld~Ir~~~d~~~~vpi~aY~vS 248 (300)
+...|+|++--.+ .-++.+++++..++++||+..+..
T Consensus 49 ~~~~dlvi~d~~l~~~~g~~~~~~l~~~~~~~~ii~ls~~ 88 (154)
T 2rjn_A 49 GTSVQLVISDMRMPEMGGEVFLEQVAKSYPDIERVVISGY 88 (154)
T ss_dssp TSCCSEEEEESSCSSSCHHHHHHHHHHHCTTSEEEEEECG
T ss_pred cCCCCEEEEecCCCCCCHHHHHHHHHHhCCCCcEEEEecC
Confidence 3457999887554 368899999888889999998653
No 127
>3fk4_A Rubisco-like protein; structural genomics, target 9463A, PSI-2, protein structure initiative; 2.00A {Bacillus cereus atcc 14579}
Probab=78.61 E-value=7.6 Score=37.88 Aligned_cols=141 Identities=18% Similarity=0.193 Sum_probs=84.9
Q ss_pred HHhHHHHHHHHHHHHHcCCCccc--------cCCCCcchHHHHHHHHhhCCCCCCcccccchhhhhcccchhhhhhhcCC
Q psy15126 61 EKTLKRLADISKAFSDAGAHIVA--------PSDMMDNRIHAIKQSLFTSRQSSTTGLLSYSAKFCSAFYGPFREAAGSA 132 (300)
Q Consensus 61 d~Tl~~l~~~A~~~A~aGad~vA--------PSdmMDgrv~air~aLd~~g~~~~v~ImsysaK~aS~~YGPfRda~gS~ 132 (300)
-.|.+.+++++.+++..|.|+|= |-.-+.-|+....++++++.- ..
T Consensus 152 Gls~~~~a~~~ye~~~GGlDfiKDDE~l~~q~f~p~~eRv~~v~eai~rA~~-eT------------------------- 205 (414)
T 3fk4_A 152 GRNIGYLKTQLRDQAIGGVDIVKDDEILFENALTPLTKRIVSGKEVLQSVYE-TY------------------------- 205 (414)
T ss_dssp TCCHHHHHHHHHHHHHTTCSEEECCTTCCSCSSSCHHHHHHHHHHHHHHHHH-HH-------------------------
T ss_pred CCCHHHHHHHHHHHHhcCCCcCcCCCCCCCCCCccHHHHHHHHHHHHHHHHH-hh-------------------------
Confidence 46889999999999999999872 233455666666666655432 11
Q ss_pred CCCCCcceeeCCCCCCceEEEEeecccCCCCCCccccccCCCcccchHhHHHHHHHHHhhhcccccCCCCCccccchhhh
Q psy15126 133 PTFGDRSCYQLPCGSKGLAIRAAVCLCGYTSHGHCAIFNEDGSIHYEKTLKRLADISKAFSDAVYVPNHNTDRFQARDVS 212 (300)
Q Consensus 133 ~~~gdr~~yQ~~~~~~~~ai~~dvclc~yt~hGHcgi~~~~g~i~nd~tl~~l~~~a~~~a~~~~~~~~n~~~~~~~Da~ 212 (300)
|.++.|.++-. +. .++.++|.--. .+
T Consensus 206 ---Ge~k~y~~NiT---------------------------a~--~~em~~ra~~a----------------------~e 231 (414)
T 3fk4_A 206 ---GHKTLYAVNLT---------------------------GR--TFDLKENAKRA----------------------VQ 231 (414)
T ss_dssp ---CCCCEEEEECC---------------------------SC--GGGHHHHHHHH----------------------HH
T ss_pred ---CCcceEEeEcC---------------------------CC--HHHHHHHHHHH----------------------HH
Confidence 55666666542 11 13444432111 57
Q ss_pred cCCceeeccCcchHHHHHHHHHhh-CCCCCEEeEecccccHHHHHHHhCCCCCHHHHHHHHHHHHHHcCCCEEEec
Q psy15126 213 QGADFLMVKPALPYLDIISEVKSR-HPAYPLFVYQVSGEYAMLAFAAQAGALDLKRALMETLTCLRRGGADVIISY 287 (300)
Q Consensus 213 ~GADivmVkPsmm~ld~Ir~~~d~-~~~vpi~aY~vSgeY~~~r~Aa~~~~~n~~eal~E~~~~~~r~GAD~Ii~y 287 (300)
.|+.++||-+-..=..+++.+.+. ++++||..+-+ ..|.+-.-.+.|. +. .+++-.+..+ +|+|.|.+-
T Consensus 232 ~G~~~~mvd~~~~G~~a~~~l~r~~~~~~~lh~HrA--~~ga~~r~~~~Gi-~~-~vll~Kl~Rl--aG~D~ih~g 301 (414)
T 3fk4_A 232 AGADILLFNVFAYGLDVLQSLAEDDEIPVPIMAHPA--VSGAYSASKLYGV-SS-PLLLGKLLRY--AGADFSLFP 301 (414)
T ss_dssp HTCSEEEECHHHHCHHHHHHHHHCTTSCSCEEECCT--TTHHHHSCSSSSB-CH-HHHHTHHHHH--HTCSEEEEE
T ss_pred cCCCEEEEcccccChHHHHHHHhcCCCCceEEeccC--cccccccCCCCCc-cH-HHHHHHHHHh--hCCCccccC
Confidence 899999998843334566665544 36999999855 4444332112333 22 2333445555 799999874
No 128
>1q7z_A 5-methyltetrahydrofolate S-homocysteine methyltransferase; methionine, cobalamin, vitamin B12; 1.70A {Thermotoga maritima} SCOP: c.1.21.2 c.1.26.1 PDB: 1q7q_A 1q7m_A 1q85_A 1q8a_A 1q8j_A* 3bof_A 3bol_A
Probab=78.29 E-value=27 Score=34.86 Aligned_cols=182 Identities=16% Similarity=0.132 Sum_probs=100.8
Q ss_pred HHHHHHHHHhCCCcEEEeeecCCCCCCCCcceeeCCCCceecHHhHHHHHHHHHHHHHcCCCccccCCC-CcchHHHHHH
Q psy15126 19 FQVIPMIRKQFPSLTIACDVCLCGYTSHGHCAIFNEDGSIHYEKTLKRLADISKAFSDAGAHIVAPSDM-MDNRIHAIKQ 97 (300)
Q Consensus 19 ~~~i~~ik~~~p~l~i~~Dvclc~yt~hGHcgi~~~~g~i~nd~Tl~~l~~~A~~~A~aGad~vAPSdm-MDgrv~air~ 97 (300)
.-++.++|+.|+++-++.=+.+. ..|+ ++ +| .|++..+. ....+|++.|..+-. -+..+...-+
T Consensus 155 ~aa~~a~~~~~~~~Pv~vS~t~~---~~g~--~~--~G-----~~~~~~~~---~l~~~~~~avG~NC~~gp~~~~~~l~ 219 (566)
T 1q7z_A 155 KAAVLAAREVSRDVFLIAHMTFD---EKGR--SL--TG-----TDPANFAI---TFDELDIDALGINCSLGPEEILPIFQ 219 (566)
T ss_dssp HHHHHHHHHHCSSSCEEEEECCC---TTSC--CT--TS-----CCHHHHHH---HHHTSSCSEEEEESSSCHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCcEEEEEEEc---CCCe--eC--CC-----CcHHHHHH---HhhccCCCEEEEeCCCCHHHHHHHHH
Confidence 34677888888887776655442 2333 12 23 34544444 344578998888774 3555555555
Q ss_pred HHhhCCCCCCcccccchhhhhcccchhhhhhhcCCCCCCCcceeeCCCCCCceEEEEeecccCCCCCCccccccCCCccc
Q psy15126 98 SLFTSRQSSTTGLLSYSAKFCSAFYGPFREAAGSAPTFGDRSCYQLPCGSKGLAIRAAVCLCGYTSHGHCAIFNEDGSIH 177 (300)
Q Consensus 98 aLd~~g~~~~v~ImsysaK~aS~~YGPfRda~gS~~~~gdr~~yQ~~~~~~~~ai~~dvclc~yt~hGHcgi~~~~g~i~ 177 (300)
.|.. . .+.+|+.|.- -| + ||. +|+...
T Consensus 220 ~l~~--~-~~~p~~vyPN-------------------aG-------------~---------p~~---------~~~~~~ 246 (566)
T 1q7z_A 220 ELSQ--Y-TDKFLVVEPN-------------------AG-------------K---------PIV---------ENGKTV 246 (566)
T ss_dssp HHHH--T-CCSEEEEECC-------------------SS-------------S---------CEE---------ETTEEE
T ss_pred HHHh--c-CCCEEEEEcC-------------------CC-------------C---------Ccc---------cCCccc
Confidence 5543 2 2345554421 01 0 000 012222
Q ss_pred chHhHHHHHHHHHhhhcccccCCCCCccccchhhhcCCceeeccCc-ch-HHHHHHHHHhhCC-----CCC---EEeEe-
Q psy15126 178 YEKTLKRLADISKAFSDAVYVPNHNTDRFQARDVSQGADFLMVKPA-LP-YLDIISEVKSRHP-----AYP---LFVYQ- 246 (300)
Q Consensus 178 nd~tl~~l~~~a~~~a~~~~~~~~n~~~~~~~Da~~GADivmVkPs-mm-~ld~Ir~~~d~~~-----~vp---i~aY~- 246 (300)
++.|-+.+++.+..+ +++||.+|==+=. .| ++..|++.++..+ ..| +.|..
T Consensus 247 ~~~~p~~~a~~~~~~------------------~~~G~~iiGGCCGTtP~hI~aia~~~~~~~p~~~~~~~~~~~~s~~~ 308 (566)
T 1q7z_A 247 YPLKPHDFAVHIDSY------------------YELGVNIFGGCCGTTPEHVKLFRKVLGNRKPLQRKKKRIFAVSSPSK 308 (566)
T ss_dssp CCCCHHHHHTTHHHH------------------HHTTCSEECCCTTCCHHHHHHHHHHHCSCCCCCCCCCCCCEEECSSC
T ss_pred cCCCHHHHHHHHHHH------------------HHcCCcEEccccCCCHHHHHHHHHHhcCCCCCCcccCccceecCCce
Confidence 233445677777776 7899999811111 23 8889988886532 112 12210
Q ss_pred --------cccc------cHHHHHHHhCCCCCHHHHHHHHHHHHHHcCCCEEEecch
Q psy15126 247 --------VSGE------YAMLAFAAQAGALDLKRALMETLTCLRRGGADVIISYYT 289 (300)
Q Consensus 247 --------vSge------Y~~~r~Aa~~~~~n~~eal~E~~~~~~r~GAD~Ii~y~A 289 (300)
+-|| -..|+++.+.+ |.++++..+...+ ++|||+|=+-|+
T Consensus 309 ~~~~~~~~iiGer~N~Tg~dsf~~~~~~~--~~~~a~~~A~~~v-~~GAdiIDIgpg 362 (566)
T 1q7z_A 309 LVTFDHFVVIGERINPAGRKKLWAEMQKG--NEEIVIKEAKTQV-EKGAEVLDVNFG 362 (566)
T ss_dssp EEESSSCEEEEEEECCTTCHHHHHHHHTT--CCHHHHHHHHHHH-HTTCSEEEEECS
T ss_pred eeccccceEEEEEecCCCChhHHHHhhcC--CHHHHHHHHHHHH-HCCCCEEEECCC
Confidence 0145 45577776653 5577777776666 899999988875
No 129
>3hv2_A Response regulator/HD domain protein; PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.50A {Pseudomonas fluorescens pf-5}
Probab=78.20 E-value=15 Score=27.77 Aligned_cols=37 Identities=11% Similarity=0.215 Sum_probs=28.6
Q ss_pred hhcCCceeeccCcc---hHHHHHHHHHhhCCCCCEEeEec
Q psy15126 211 VSQGADFLMVKPAL---PYLDIISEVKSRHPAYPLFVYQV 247 (300)
Q Consensus 211 a~~GADivmVkPsm---m~ld~Ir~~~d~~~~vpi~aY~v 247 (300)
.+...|+|++--.| .-++.++++++.++++||+..+.
T Consensus 55 ~~~~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~ii~~s~ 94 (153)
T 3hv2_A 55 ASREVDLVISAAHLPQMDGPTLLARIHQQYPSTTRILLTG 94 (153)
T ss_dssp HHSCCSEEEEESCCSSSCHHHHHHHHHHHCTTSEEEEECC
T ss_pred HcCCCCEEEEeCCCCcCcHHHHHHHHHhHCCCCeEEEEEC
Confidence 34567999887544 36889999988888999999854
No 130
>3m5v_A DHDPS, dihydrodipicolinate synthase; TIM barrel, csgid, amino-acid biosynthesis, diaminopimelate biosynthesis, lyase, lysine biosynthesis; HET: MSE; 1.80A {Campylobacter jejuni} SCOP: c.1.10.0 PDB: 3ler_A*
Probab=77.89 E-value=22 Score=32.22 Aligned_cols=36 Identities=19% Similarity=0.408 Sum_probs=27.2
Q ss_pred hhcCCceeeccCcc---h----HHHHHHHHHhhCCCCCEEeEec
Q psy15126 211 VSQGADFLMVKPAL---P----YLDIISEVKSRHPAYPLFVYQV 247 (300)
Q Consensus 211 a~~GADivmVkPsm---m----~ld~Ir~~~d~~~~vpi~aY~v 247 (300)
.+.|||.+||-|-. + .++..+++.+.. ++||+-|++
T Consensus 100 ~~~Gadavlv~~P~y~~~s~~~l~~~f~~va~a~-~lPiilYn~ 142 (301)
T 3m5v_A 100 KEHGADGILSVAPYYNKPTQQGLYEHYKAIAQSV-DIPVLLYNV 142 (301)
T ss_dssp HHTTCSEEEEECCCSSCCCHHHHHHHHHHHHHHC-SSCEEEEEC
T ss_pred HHcCCCEEEEcCCCCCCCCHHHHHHHHHHHHHhC-CCCEEEEeC
Confidence 46899999886531 1 466677777775 899999997
No 131
>3a5f_A Dihydrodipicolinate synthase; TIM barrel, enzyme, amino-acid biosynthesis, cytoplasm, diaminopimelate biosynthesis, lyase; HET: KPI; 1.19A {Clostridium botulinum A} PDB: 3bi8_A* 3ird_A*
Probab=77.32 E-value=12 Score=33.72 Aligned_cols=36 Identities=25% Similarity=0.384 Sum_probs=24.3
Q ss_pred hhcCCceeeccCcc---h----HHHHHHHHHhhCCCCCEEeEec
Q psy15126 211 VSQGADFLMVKPAL---P----YLDIISEVKSRHPAYPLFVYQV 247 (300)
Q Consensus 211 a~~GADivmVkPsm---m----~ld~Ir~~~d~~~~vpi~aY~v 247 (300)
.+.|||.+||-|-. + .++..+++.+.. ++||+-|++
T Consensus 93 ~~~Gadavlv~~P~y~~~s~~~l~~~f~~ia~a~-~lPiilYn~ 135 (291)
T 3a5f_A 93 ESIGVDGLLVITPYYNKTTQKGLVKHFKAVSDAV-STPIIIYNV 135 (291)
T ss_dssp HHTTCSEEEEECCCSSCCCHHHHHHHC-CTGGGC-CSCEEEEEC
T ss_pred HhcCCCEEEEcCCCCCCCCHHHHHHHHHHHHHhc-CCCEEEEeC
Confidence 46899999885531 1 344455555654 799999997
No 132
>3b2n_A Uncharacterized protein Q99UF4; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics; 2.04A {Staphylococcus aureus}
Probab=77.19 E-value=6.4 Score=29.13 Aligned_cols=36 Identities=11% Similarity=0.415 Sum_probs=28.0
Q ss_pred hcCCceeeccCcch---HHHHHHHHHhhCCCCCEEeEec
Q psy15126 212 SQGADFLMVKPALP---YLDIISEVKSRHPAYPLFVYQV 247 (300)
Q Consensus 212 ~~GADivmVkPsmm---~ld~Ir~~~d~~~~vpi~aY~v 247 (300)
+...|+|++--.|+ -++.++++++.++++||+..+.
T Consensus 47 ~~~~dlvilD~~lp~~~g~~~~~~l~~~~~~~~ii~ls~ 85 (133)
T 3b2n_A 47 EYNPNVVILDIEMPGMTGLEVLAEIRKKHLNIKVIIVTT 85 (133)
T ss_dssp HHCCSEEEECSSCSSSCHHHHHHHHHHTTCSCEEEEEES
T ss_pred hcCCCEEEEecCCCCCCHHHHHHHHHHHCCCCcEEEEec
Confidence 34579998875543 6888999988888999999865
No 133
>3kto_A Response regulator receiver protein; PSI-II,structural genomics, protein structure initiative; 1.98A {Pseudoalteromonas atlantica T6C} SCOP: c.23.1.0
Probab=77.00 E-value=9.5 Score=28.29 Aligned_cols=57 Identities=18% Similarity=0.255 Sum_probs=38.6
Q ss_pred cCCceeeccCcc-----hHHHHHHHHHhhCCCCCEEeEecccccHHHHHHHhCCCCCHHHHHHHHHHHHHHcCCCEEEec
Q psy15126 213 QGADFLMVKPAL-----PYLDIISEVKSRHPAYPLFVYQVSGEYAMLAFAAQAGALDLKRALMETLTCLRRGGADVIISY 287 (300)
Q Consensus 213 ~GADivmVkPsm-----m~ld~Ir~~~d~~~~vpi~aY~vSgeY~~~r~Aa~~~~~n~~eal~E~~~~~~r~GAD~Ii~y 287 (300)
...|+|++--.| .-++.++++++.++++||+..+... +. +. ....+ +.||+-.+.|
T Consensus 49 ~~~dlvi~D~~l~~~~~~g~~~~~~l~~~~~~~~ii~~s~~~--------------~~-~~---~~~~~-~~ga~~~l~K 109 (136)
T 3kto_A 49 DDAIGMIIEAHLEDKKDSGIELLETLVKRGFHLPTIVMASSS--------------DI-PT---AVRAM-RASAADFIEK 109 (136)
T ss_dssp TTEEEEEEETTGGGBTTHHHHHHHHHHHTTCCCCEEEEESSC--------------CH-HH---HHHHH-HTTCSEEEES
T ss_pred cCCCEEEEeCcCCCCCccHHHHHHHHHhCCCCCCEEEEEcCC--------------CH-HH---HHHHH-HcChHHheeC
Confidence 346888876543 3588999999888899999986522 21 11 12233 6888888888
Q ss_pred c
Q psy15126 288 Y 288 (300)
Q Consensus 288 ~ 288 (300)
|
T Consensus 110 P 110 (136)
T 3kto_A 110 P 110 (136)
T ss_dssp S
T ss_pred C
Confidence 7
No 134
>3kht_A Response regulator; PSI-II, 11023K, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.10A {Hahella chejuensis} SCOP: c.23.1.0
Probab=76.83 E-value=20 Score=26.54 Aligned_cols=59 Identities=15% Similarity=0.343 Sum_probs=41.2
Q ss_pred hcCCceeeccCcch---HHHHHHHHHh--hCCCCCEEeEecccccHHHHHHHhCCCCCHHHHHHHHHHHHHHcCCCEEEe
Q psy15126 212 SQGADFLMVKPALP---YLDIISEVKS--RHPAYPLFVYQVSGEYAMLAFAAQAGALDLKRALMETLTCLRRGGADVIIS 286 (300)
Q Consensus 212 ~~GADivmVkPsmm---~ld~Ir~~~d--~~~~vpi~aY~vSgeY~~~r~Aa~~~~~n~~eal~E~~~~~~r~GAD~Ii~ 286 (300)
+...|+|++-..|+ -++.++++++ .++++||+..+... +. +.+ ...+ +.||+-++.
T Consensus 49 ~~~~dlii~D~~l~~~~g~~~~~~lr~~~~~~~~pii~~s~~~--------------~~-~~~---~~~~-~~ga~~~l~ 109 (144)
T 3kht_A 49 QAKYDLIILDIGLPIANGFEVMSAVRKPGANQHTPIVILTDNV--------------SD-DRA---KQCM-AAGASSVVD 109 (144)
T ss_dssp TCCCSEEEECTTCGGGCHHHHHHHHHSSSTTTTCCEEEEETTC--------------CH-HHH---HHHH-HTTCSEEEE
T ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHhcccccCCCEEEEeCCC--------------CH-HHH---HHHH-HcCCCEEEE
Confidence 45579999887654 6888999887 57899999996411 22 111 1233 689999999
Q ss_pred cch
Q psy15126 287 YYT 289 (300)
Q Consensus 287 y~A 289 (300)
||.
T Consensus 110 Kp~ 112 (144)
T 3kht_A 110 KSS 112 (144)
T ss_dssp CCT
T ss_pred CCC
Confidence 986
No 135
>3eoo_A Methylisocitrate lyase; seattle structural genomics center for infectious disease, ssgcid; 2.90A {Burkholderia pseudomallei 1655} SCOP: c.1.12.7
Probab=76.53 E-value=4.4 Score=37.73 Aligned_cols=67 Identities=24% Similarity=0.349 Sum_probs=44.1
Q ss_pred hhcCCceeeccCcchHHHHHHHHHhhCCCCCEEeEecccccH-----HHHHHHhCCC----------CCHHHHHHHHHHH
Q psy15126 211 VSQGADFLMVKPALPYLDIISEVKSRHPAYPLFVYQVSGEYA-----MLAFAAQAGA----------LDLKRALMETLTC 275 (300)
Q Consensus 211 a~~GADivmVkPsmm~ld~Ir~~~d~~~~vpi~aY~vSgeY~-----~~r~Aa~~~~----------~n~~eal~E~~~~ 275 (300)
+++|||+|++ |+..-.+.|+++.+.. ++|+++--+ +|+ ..+.-.++|+ .-.-.++.+++..
T Consensus 181 ~~AGAD~if~-~~~~~~ee~~~~~~~~-~~Pl~~n~~--~~g~tp~~~~~eL~~lGv~~v~~~~~~~raa~~a~~~~~~~ 256 (298)
T 3eoo_A 181 VEAGADMIFP-EAMKTLDDYRRFKEAV-KVPILANLT--EFGSTPLFTLDELKGANVDIALYCCGAYRAMNKAALNFYET 256 (298)
T ss_dssp HHTTCSEEEE-CCCCSHHHHHHHHHHH-CSCBEEECC--TTSSSCCCCHHHHHHTTCCEEEECSHHHHHHHHHHHHHHHH
T ss_pred HhcCCCEEEe-CCCCCHHHHHHHHHHc-CCCeEEEec--cCCCCCCCCHHHHHHcCCeEEEEchHHHHHHHHHHHHHHHH
Confidence 7999999966 6666788888888886 499977433 232 2444455542 1224567777777
Q ss_pred HHHcCC
Q psy15126 276 LRRGGA 281 (300)
Q Consensus 276 ~~r~GA 281 (300)
+++.|-
T Consensus 257 i~~~g~ 262 (298)
T 3eoo_A 257 VRRDGT 262 (298)
T ss_dssp HHHHSS
T ss_pred HHHcCC
Confidence 776663
No 136
>3ctl_A D-allulose-6-phosphate 3-epimerase; D-glucitol 6-phosphate, (beta/alpha)8 barrel, carbohydrate metabolism, isomerase; HET: S6P; 2.20A {Escherichia coli} PDB: 3ct7_A*
Probab=76.50 E-value=4.8 Score=35.57 Aligned_cols=34 Identities=9% Similarity=0.133 Sum_probs=20.7
Q ss_pred HHHHHHcCCCccccCCCC-cchHHHHHHHHhhCCC
Q psy15126 71 SKAFSDAGAHIVAPSDMM-DNRIHAIKQSLFTSRQ 104 (300)
Q Consensus 71 A~~~A~aGad~vAPSdmM-Dgrv~air~aLd~~g~ 104 (300)
...++++|||.|....-. ...+....+...+.|.
T Consensus 73 i~~~~~aGAd~itvh~Ea~~~~~~~~i~~i~~~G~ 107 (231)
T 3ctl_A 73 IAQLARAGADFITLHPETINGQAFRLIDEIRRHDM 107 (231)
T ss_dssp HHHHHHHTCSEEEECGGGCTTTHHHHHHHHHHTTC
T ss_pred HHHHHHcCCCEEEECcccCCccHHHHHHHHHHcCC
Confidence 356788999998642222 2245555666666676
No 137
>3e96_A Dihydrodipicolinate synthase; structural genomics, nysgrc, target 9375C, operon, PSI-2; 1.80A {Bacillus clausii ksm-k16} SCOP: c.1.10.0
Probab=76.35 E-value=19 Score=32.86 Aligned_cols=36 Identities=19% Similarity=0.305 Sum_probs=26.1
Q ss_pred hhcCCceeeccC-cc--h----HHHHHHHHHhhCCCCCEEeEec
Q psy15126 211 VSQGADFLMVKP-AL--P----YLDIISEVKSRHPAYPLFVYQV 247 (300)
Q Consensus 211 a~~GADivmVkP-sm--m----~ld~Ir~~~d~~~~vpi~aY~v 247 (300)
.+.|||.+||-| .- + .++..+++.+.. ++||+-|+.
T Consensus 103 ~~~Gadavlv~~P~y~~~s~~~l~~~f~~va~a~-~lPiilYn~ 145 (316)
T 3e96_A 103 KAAGADAVMIHMPIHPYVTAGGVYAYFRDIIEAL-DFPSLVYFK 145 (316)
T ss_dssp HHHTCSEEEECCCCCSCCCHHHHHHHHHHHHHHH-TSCEEEEEC
T ss_pred HhcCCCEEEEcCCCCCCCCHHHHHHHHHHHHHhC-CCCEEEEeC
Confidence 468999999864 21 1 466667777765 699999985
No 138
>3r0j_A Possible two component system response transcript positive regulator PHOP; beta-alpha fold, winged helix-turn-helix; 2.50A {Mycobacterium tuberculosis}
Probab=76.23 E-value=16 Score=30.53 Aligned_cols=50 Identities=6% Similarity=0.108 Sum_probs=34.5
Q ss_pred hhcCCceeeccCcch---HHHHHHHHHhhCCCCCEEeEecccccHHHHHHHhC
Q psy15126 211 VSQGADFLMVKPALP---YLDIISEVKSRHPAYPLFVYQVSGEYAMLAFAAQA 260 (300)
Q Consensus 211 a~~GADivmVkPsmm---~ld~Ir~~~d~~~~vpi~aY~vSgeY~~~r~Aa~~ 260 (300)
.+...|+|++--.|+ -++.++++++.++++||+..+....-.....+.+.
T Consensus 64 ~~~~~dlvllD~~lp~~~g~~~~~~lr~~~~~~~ii~lt~~~~~~~~~~~~~~ 116 (250)
T 3r0j_A 64 RETRPDAVILDVXMPGMDGFGVLRRLRADGIDAPALFLTARDSLQDKIAGLTL 116 (250)
T ss_dssp HHHCCSEEEEESCCSSSCHHHHHHHHHHTTCCCCEEEEECSTTHHHHHHHHTS
T ss_pred HhCCCCEEEEeCCCCCCCHHHHHHHHHhcCCCCCEEEEECCCCHHHHHHHHHc
Confidence 345679998875544 68999999988889999999764433333444433
No 139
>3gt7_A Sensor protein; structural genomics, signal receiver domain, kinase, PSI-2, protein structure initiative; 2.30A {Syntrophus aciditrophicus SB}
Probab=76.21 E-value=14 Score=28.20 Aligned_cols=59 Identities=19% Similarity=0.279 Sum_probs=39.0
Q ss_pred hcCCceeeccCcch---HHHHHHHHHhh--CCCCCEEeEecccccHHHHHHHhCCCCCHHHHHHHHHHHHHHcCCCEEEe
Q psy15126 212 SQGADFLMVKPALP---YLDIISEVKSR--HPAYPLFVYQVSGEYAMLAFAAQAGALDLKRALMETLTCLRRGGADVIIS 286 (300)
Q Consensus 212 ~~GADivmVkPsmm---~ld~Ir~~~d~--~~~vpi~aY~vSgeY~~~r~Aa~~~~~n~~eal~E~~~~~~r~GAD~Ii~ 286 (300)
+...|+|++--.|+ -++.++++++. ++++||+..+... +. +. ....+ +.||+-.+.
T Consensus 49 ~~~~dlii~D~~l~~~~g~~~~~~lr~~~~~~~~pii~~s~~~--------------~~-~~---~~~~~-~~g~~~~l~ 109 (154)
T 3gt7_A 49 LTRPDLIISDVLMPEMDGYALCRWLKGQPDLRTIPVILLTILS--------------DP-RD---VVRSL-ECGADDFIT 109 (154)
T ss_dssp TCCCSEEEEESCCSSSCHHHHHHHHHHSTTTTTSCEEEEECCC--------------SH-HH---HHHHH-HHCCSEEEE
T ss_pred hCCCCEEEEeCCCCCCCHHHHHHHHHhCCCcCCCCEEEEECCC--------------Ch-HH---HHHHH-HCCCCEEEe
Confidence 45579998875544 68888888875 5789999986422 11 11 11223 678888888
Q ss_pred cch
Q psy15126 287 YYT 289 (300)
Q Consensus 287 y~A 289 (300)
||-
T Consensus 110 KP~ 112 (154)
T 3gt7_A 110 KPC 112 (154)
T ss_dssp SSC
T ss_pred CCC
Confidence 883
No 140
>1dbw_A Transcriptional regulatory protein FIXJ; doubly wound five-stranded beta/alpha fold, nitrogen fixatio regulation; HET: 15P; 1.60A {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1dck_A* 1dcm_A 1d5w_A*
Probab=76.08 E-value=9 Score=27.84 Aligned_cols=59 Identities=14% Similarity=0.202 Sum_probs=38.6
Q ss_pred hcCCceeeccCc---chHHHHHHHHHhhCCCCCEEeEecccccHHHHHHHhCCCCCHHHHHHHHHHHHHHcCCCEEEecc
Q psy15126 212 SQGADFLMVKPA---LPYLDIISEVKSRHPAYPLFVYQVSGEYAMLAFAAQAGALDLKRALMETLTCLRRGGADVIISYY 288 (300)
Q Consensus 212 ~~GADivmVkPs---mm~ld~Ir~~~d~~~~vpi~aY~vSgeY~~~r~Aa~~~~~n~~eal~E~~~~~~r~GAD~Ii~y~ 288 (300)
+...|+|++--. +.-++.++++++.++++||+..+....... ....+ +.||+-.++||
T Consensus 45 ~~~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~ii~~s~~~~~~~------------------~~~~~-~~ga~~~l~Kp 105 (126)
T 1dbw_A 45 DVRNGVLVTDLRMPDMSGVELLRNLGDLKINIPSIVITGHGDVPM------------------AVEAM-KAGAVDFIEKP 105 (126)
T ss_dssp GCCSEEEEEECCSTTSCHHHHHHHHHHTTCCCCEEEEECTTCHHH------------------HHHHH-HTTCSEEEESS
T ss_pred cCCCCEEEEECCCCCCCHHHHHHHHHhcCCCCCEEEEECCCCHHH------------------HHHHH-HhCHHHheeCC
Confidence 345688877644 346788898888778999999865222111 12233 57888888887
Q ss_pred h
Q psy15126 289 T 289 (300)
Q Consensus 289 A 289 (300)
-
T Consensus 106 ~ 106 (126)
T 1dbw_A 106 F 106 (126)
T ss_dssp C
T ss_pred C
Confidence 3
No 141
>3h5d_A DHDPS, dihydrodipicolinate synthase; lysine biosynthesis, amino-ACI biosynthesis, schiff base, cytoplasm, diaminopimelate biosy lyase; HET: MES; 1.99A {Streptococcus pneumoniae}
Probab=75.95 E-value=25 Score=32.19 Aligned_cols=53 Identities=13% Similarity=0.191 Sum_probs=33.0
Q ss_pred CCCCceecHHhHHHHHHHHHHHHHcCCCcccc--------CCCCcchHHHHHHHHhhCCCCCCcccc
Q psy15126 53 NEDGSIHYEKTLKRLADISKAFSDAGAHIVAP--------SDMMDNRIHAIKQSLFTSRQSSTTGLL 111 (300)
Q Consensus 53 ~~~g~i~nd~Tl~~l~~~A~~~A~aGad~vAP--------SdmMDgrv~air~aLd~~g~~~~v~Im 111 (300)
+++|+||.+. +.+....+.+.|++-+.+ +-..+-|...++...+..+= +++|+
T Consensus 20 ~~dg~iD~~~----l~~lv~~li~~Gv~Gl~v~GtTGE~~~Ls~~Er~~v~~~~~~~~~g--rvpVi 80 (311)
T 3h5d_A 20 HEDGSINFDA----IPALIEHLLAHHTDGILLAGTTAESPTLTHDEELELFAAVQKVVNG--RVPLI 80 (311)
T ss_dssp CTTSSBCTTH----HHHHHHHHHHTTCCCEEESSTTTTGGGSCHHHHHHHHHHHHHHSCS--SSCEE
T ss_pred CCCCCcCHHH----HHHHHHHHHHcCCCEEEECccccChhhCCHHHHHHHHHHHHHHhCC--CCcEE
Confidence 4567777543 344445566899998776 34556677777777766542 34554
No 142
>3rqi_A Response regulator protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: PHD CIT; 1.70A {Burkholderia pseudomallei}
Probab=75.89 E-value=10 Score=30.15 Aligned_cols=58 Identities=19% Similarity=0.244 Sum_probs=39.0
Q ss_pred hcCCceeeccCcch---HHHHHHHHHhhCCCCCEEeEecccccHHHHHHHhCCCCCHHHHHHHHHHHHHHcCCCEEEecc
Q psy15126 212 SQGADFLMVKPALP---YLDIISEVKSRHPAYPLFVYQVSGEYAMLAFAAQAGALDLKRALMETLTCLRRGGADVIISYY 288 (300)
Q Consensus 212 ~~GADivmVkPsmm---~ld~Ir~~~d~~~~vpi~aY~vSgeY~~~r~Aa~~~~~n~~eal~E~~~~~~r~GAD~Ii~y~ 288 (300)
+...|+|++--.|+ =++.++++++.++++||+..+......... ..+ +.||+-.++||
T Consensus 49 ~~~~dlvl~D~~lp~~~g~~~~~~l~~~~~~~~ii~lt~~~~~~~~~------------------~a~-~~Ga~~~l~KP 109 (184)
T 3rqi_A 49 AEKFEFITVXLHLGNDSGLSLIAPLCDLQPDARILVLTGYASIATAV------------------QAV-KDGADNYLAKP 109 (184)
T ss_dssp TSCCSEEEECSEETTEESHHHHHHHHHHCTTCEEEEEESSCCHHHHH------------------HHH-HHTCSEEEESS
T ss_pred hCCCCEEEEeccCCCccHHHHHHHHHhcCCCCCEEEEeCCCCHHHHH------------------HHH-HhCHHHheeCC
Confidence 34568888765544 688899998888899999996532222111 223 57887777777
No 143
>1tmy_A CHEY protein, TMY; chemotaxis, phosphoryl transfer, signal transduction; 1.90A {Thermotoga maritima} SCOP: c.23.1.1 PDB: 2tmy_A 3tmy_A 4tmy_A 1u0s_Y
Probab=75.84 E-value=8.6 Score=27.50 Aligned_cols=59 Identities=22% Similarity=0.347 Sum_probs=40.4
Q ss_pred hcCCceeeccCcch---HHHHHHHHHhhCCCCCEEeEecccccHHHHHHHhCCCCCHHHHHHHHHHHHHHcCCCEEEecc
Q psy15126 212 SQGADFLMVKPALP---YLDIISEVKSRHPAYPLFVYQVSGEYAMLAFAAQAGALDLKRALMETLTCLRRGGADVIISYY 288 (300)
Q Consensus 212 ~~GADivmVkPsmm---~ld~Ir~~~d~~~~vpi~aY~vSgeY~~~r~Aa~~~~~n~~eal~E~~~~~~r~GAD~Ii~y~ 288 (300)
+...|+|++--.|+ -++.++++++.++++||+..+.+..... ....+ +.||+-.+.||
T Consensus 45 ~~~~dlil~D~~l~~~~g~~~~~~l~~~~~~~~ii~~s~~~~~~~------------------~~~~~-~~g~~~~l~KP 105 (120)
T 1tmy_A 45 ELKPDIVTMDITMPEMNGIDAIKEIMKIDPNAKIIVCSAMGQQAM------------------VIEAI-KAGAKDFIVKP 105 (120)
T ss_dssp HHCCSEEEEECSCGGGCHHHHHHHHHHHCTTCCEEEEECTTCHHH------------------HHHHH-HTTCCEEEESS
T ss_pred hcCCCEEEEeCCCCCCcHHHHHHHHHhhCCCCeEEEEeCCCCHHH------------------HHHHH-HhCcceeEeCC
Confidence 34578988875544 5788898888888999999865332211 12233 68998888887
Q ss_pred h
Q psy15126 289 T 289 (300)
Q Consensus 289 A 289 (300)
-
T Consensus 106 ~ 106 (120)
T 1tmy_A 106 F 106 (120)
T ss_dssp C
T ss_pred C
Confidence 4
No 144
>3q58_A N-acetylmannosamine-6-phosphate 2-epimerase; TIM beta/alpha barrel, ribulose-phosphate binding barrel, carbohydrate metabolic process; HET: BTB; 1.80A {Salmonella enterica subsp}
Probab=75.80 E-value=18 Score=31.70 Aligned_cols=88 Identities=10% Similarity=0.039 Sum_probs=52.4
Q ss_pred hHhHHHHHHHHHhhhcccccCCCCCccccchhhhcCCceeecc---------CcchHHHHHHHHHhhCCCCCEEeEeccc
Q psy15126 179 EKTLKRLADISKAFSDAVYVPNHNTDRFQARDVSQGADFLMVK---------PALPYLDIISEVKSRHPAYPLFVYQVSG 249 (300)
Q Consensus 179 d~tl~~l~~~a~~~a~~~~~~~~n~~~~~~~Da~~GADivmVk---------Psmm~ld~Ir~~~d~~~~vpi~aY~vSg 249 (300)
.++++.+.+.+...--.+-+..|+.+ ...+-.++|||+|-+. +..+-++.++++++. ++|+++= +|
T Consensus 115 p~~l~~~i~~~~~~g~~v~~~v~t~e-ea~~a~~~Gad~Ig~~~~g~t~~~~~~~~~~~li~~l~~~--~ipvIA~--GG 189 (229)
T 3q58_A 115 PVDIDSLLTRIRLHGLLAMADCSTVN-EGISCHQKGIEFIGTTLSGYTGPITPVEPDLAMVTQLSHA--GCRVIAE--GR 189 (229)
T ss_dssp SSCHHHHHHHHHHTTCEEEEECSSHH-HHHHHHHTTCSEEECTTTTSSSSCCCSSCCHHHHHHHHTT--TCCEEEE--SS
T ss_pred hHHHHHHHHHHHHCCCEEEEecCCHH-HHHHHHhCCCCEEEecCccCCCCCcCCCCCHHHHHHHHHc--CCCEEEE--CC
Confidence 35667777766664333444444433 3334467999999542 222357888888875 7999976 22
Q ss_pred ccHHHHHHHhCCCCCHHHHHHHHHHHHHHcCCCEEEecc
Q psy15126 250 EYAMLAFAAQAGALDLKRALMETLTCLRRGGADVIISYY 288 (300)
Q Consensus 250 eY~~~r~Aa~~~~~n~~eal~E~~~~~~r~GAD~Ii~y~ 288 (300)
..+.+++ ..+++.|||.+++--
T Consensus 190 ------------I~t~~d~-----~~~~~~GadgV~VGs 211 (229)
T 3q58_A 190 ------------YNTPALA-----ANAIEHGAWAVTVGS 211 (229)
T ss_dssp ------------CCSHHHH-----HHHHHTTCSEEEECH
T ss_pred ------------CCCHHHH-----HHHHHcCCCEEEEch
Confidence 2233222 233367999999854
No 145
>3b8i_A PA4872 oxaloacetate decarboxylase; alpha/beta barrel, helix swapping, lyase; 1.90A {Pseudomonas aeruginosa}
Probab=75.79 E-value=7.6 Score=35.90 Aligned_cols=42 Identities=14% Similarity=0.251 Sum_probs=32.6
Q ss_pred HHHHHHHHHhhhcccccCCCCCccccchhhhcCCceeeccCcchHHHHHHHHHhhCCCCCEE
Q psy15126 182 LKRLADISKAFSDAVYVPNHNTDRFQARDVSQGADFLMVKPALPYLDIISEVKSRHPAYPLF 243 (300)
Q Consensus 182 l~~l~~~a~~~a~~~~~~~~n~~~~~~~Da~~GADivmVkPsmm~ld~Ir~~~d~~~~vpi~ 243 (300)
++.+.+-|.++ .++|||+|++ |+.+-.+.++++-++. ++|++
T Consensus 167 l~~ai~Ra~ay------------------~eAGAd~i~~-e~~~~~~~~~~i~~~~-~~P~i 208 (287)
T 3b8i_A 167 VDAVIQRTLAY------------------QEAGADGICL-VGVRDFAHLEAIAEHL-HIPLM 208 (287)
T ss_dssp HHHHHHHHHHH------------------HHTTCSEEEE-ECCCSHHHHHHHHTTC-CSCEE
T ss_pred HHHHHHHHHHH------------------HHcCCCEEEe-cCCCCHHHHHHHHHhC-CCCEE
Confidence 45566667777 7999999955 4666788999998887 59988
No 146
>3qja_A IGPS, indole-3-glycerol phosphate synthase; structural genomics, T structural genomics consortium, TBSGC, lyase; 1.29A {Mycobacterium tuberculosis} PDB: 3t40_A* 3t44_A* 3t55_A* 3t78_A* 4fb7_A*
Probab=75.57 E-value=23 Score=32.01 Aligned_cols=92 Identities=17% Similarity=0.177 Sum_probs=58.7
Q ss_pred chHhHHHHHHHHHhhhcccccCCCCCccccchhhhcCCceeeccCcc---h--HHHHHHHHHhhCC-CCCEEeEeccccc
Q psy15126 178 YEKTLKRLADISKAFSDAVYVPNHNTDRFQARDVSQGADFLMVKPAL---P--YLDIISEVKSRHP-AYPLFVYQVSGEY 251 (300)
Q Consensus 178 nd~tl~~l~~~a~~~a~~~~~~~~n~~~~~~~Da~~GADivmVkPsm---m--~ld~Ir~~~d~~~-~vpi~aY~vSgeY 251 (300)
.+++++.|.+.+..+---+.+..||..+.. +=.+.|||+|-|-|-. + -++.++++.+..| ++|+++= ||-.
T Consensus 147 ~~~~l~~l~~~a~~lGl~~lvev~t~ee~~-~A~~~Gad~IGv~~r~l~~~~~dl~~~~~l~~~v~~~~pvVae--gGI~ 223 (272)
T 3qja_A 147 EQSVLVSMLDRTESLGMTALVEVHTEQEAD-RALKAGAKVIGVNARDLMTLDVDRDCFARIAPGLPSSVIRIAE--SGVR 223 (272)
T ss_dssp CHHHHHHHHHHHHHTTCEEEEEESSHHHHH-HHHHHTCSEEEEESBCTTTCCBCTTHHHHHGGGSCTTSEEEEE--SCCC
T ss_pred CHHHHHHHHHHHHHCCCcEEEEcCCHHHHH-HHHHCCCCEEEECCCcccccccCHHHHHHHHHhCcccCEEEEE--CCCC
Confidence 467788888887776544556667776643 3347899999888742 1 3667777777654 6888763 4433
Q ss_pred HHHHHHHhCCCCCHHHHHHHHHHHHHHcCCCEEEecch
Q psy15126 252 AMLAFAAQAGALDLKRALMETLTCLRRGGADVIISYYT 289 (300)
Q Consensus 252 ~~~r~Aa~~~~~n~~eal~E~~~~~~r~GAD~Ii~y~A 289 (300)
. . |-+..+++.|||-+++--+
T Consensus 224 t------------~-----edv~~l~~~GadgvlVGsa 244 (272)
T 3qja_A 224 G------------T-----ADLLAYAGAGADAVLVGEG 244 (272)
T ss_dssp S------------H-----HHHHHHHHTTCSEEEECHH
T ss_pred C------------H-----HHHHHHHHcCCCEEEEcHH
Confidence 2 2 2233445678888877443
No 147
>2qf7_A Pyruvate carboxylase protein; multi-domain, multi-functional, biotin-dependent, ligase; HET: KCX COA AGS; 2.00A {Rhizobium etli} PDB: 3tw6_A* 3tw7_A*
Probab=75.44 E-value=74 Score=34.46 Aligned_cols=46 Identities=17% Similarity=0.312 Sum_probs=31.9
Q ss_pred hHHHHHHHHHhhhcccccCCCCCccccchhhhcCCceeeccCc----ch--HHHHHHHHHhhCCCCCEEeE
Q psy15126 181 TLKRLADISKAFSDAVYVPNHNTDRFQARDVSQGADFLMVKPA----LP--YLDIISEVKSRHPAYPLFVY 245 (300)
Q Consensus 181 tl~~l~~~a~~~a~~~~~~~~n~~~~~~~Da~~GADivmVkPs----mm--~ld~Ir~~~d~~~~vpi~aY 245 (300)
+++.+.+++... .++|||.|-++=. .| .-+.|+.+++++ ++||-.+
T Consensus 707 ~~~~~~~~~~~~------------------~~~Ga~~i~l~DT~G~~~P~~~~~lv~~l~~~~-~~~i~~H 758 (1165)
T 2qf7_A 707 DLKYYTNLAVEL------------------EKAGAHIIAVKDMAGLLKPAAAKVLFKALREAT-GLPIHFH 758 (1165)
T ss_dssp CHHHHHHHHHHH------------------HHTTCSEEEEEETTCCCCHHHHHHHHHHHHHHC-SSCEEEE
T ss_pred CHHHHHHHHHHH------------------HHcCCCEEEEeCccCCcCHHHHHHHHHHHHHhc-CCeEEEE
Confidence 466777777665 6899999955532 22 467788888887 7887544
No 148
>1qkk_A DCTD, C4-dicarboxylate transport transcriptional regulatory protein; receiver domain, 2-component signal transduction; 1.7A {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1l5z_A 1l5y_A
Probab=75.08 E-value=8.4 Score=29.19 Aligned_cols=36 Identities=11% Similarity=0.223 Sum_probs=27.8
Q ss_pred hcCCceeeccCcc---hHHHHHHHHHhhCCCCCEEeEec
Q psy15126 212 SQGADFLMVKPAL---PYLDIISEVKSRHPAYPLFVYQV 247 (300)
Q Consensus 212 ~~GADivmVkPsm---m~ld~Ir~~~d~~~~vpi~aY~v 247 (300)
+...|+|++--.+ .-++.+++++..++++||+..+.
T Consensus 45 ~~~~dliild~~l~~~~g~~~~~~l~~~~~~~pii~ls~ 83 (155)
T 1qkk_A 45 ADFAGIVISDIRMPGMDGLALFRKILALDPDLPMILVTG 83 (155)
T ss_dssp TTCCSEEEEESCCSSSCHHHHHHHHHHHCTTSCEEEEEC
T ss_pred hCCCCEEEEeCCCCCCCHHHHHHHHHhhCCCCCEEEEEC
Confidence 3457898887543 36888999888888999999965
No 149
>3out_A Glutamate racemase; structural genomics, center for structural genomics of infec diseases, csgid, MURI, cell envelope; HET: MSE DGL; 1.65A {Francisella tularensis subsp}
Probab=75.00 E-value=21 Score=32.11 Aligned_cols=105 Identities=18% Similarity=0.212 Sum_probs=63.3
Q ss_pred ceEEEEeecccCCCCCCccccccCCCcccchHhHHHHHHHHHhhhcccccCCCCCccccchhhhcCCceeeccCcch---
Q psy15126 149 GLAIRAAVCLCGYTSHGHCAIFNEDGSIHYEKTLKRLADISKAFSDAVYVPNHNTDRFQARDVSQGADFLMVKPALP--- 225 (300)
Q Consensus 149 ~~ai~~dvclc~yt~hGHcgi~~~~g~i~nd~tl~~l~~~a~~~a~~~~~~~~n~~~~~~~Da~~GADivmVkPsmm--- 225 (300)
++.-..|..-+|| |.=..|+-.+++.+.+..+ .++|+|+|+|+=..+
T Consensus 34 ~~iy~~D~a~~PY------------G~~~~~~i~~~~~~~~~~L------------------~~~g~~~iVIACNTa~~~ 83 (268)
T 3out_A 34 DIIYFGDIARIPY------------GTKSRATIQKFAAQTAKFL------------------IDQEVKAIIIACNTISAI 83 (268)
T ss_dssp CEEEEECTTTCCC------------TTSCHHHHHHHHHHHHHHH------------------HHTTCSEEEECCHHHHHH
T ss_pred cEEEecCCCCCCC------------CCCCHHHHHHHHHHHHHHH------------------HHCCCCEEEEeCCChHHH
Confidence 3444556666777 3334455555665555444 578999998876544
Q ss_pred HHHHHHHHHhhCCCCCEEe--------E------ec--------ccccHHHHHH------------------HhCCCCCH
Q psy15126 226 YLDIISEVKSRHPAYPLFV--------Y------QV--------SGEYAMLAFA------------------AQAGALDL 265 (300)
Q Consensus 226 ~ld~Ir~~~d~~~~vpi~a--------Y------~v--------SgeY~~~r~A------------------a~~~~~n~ 265 (300)
.++.+|+.. +++||+. . .+ |+.|.-.-.. ++.|..+.
T Consensus 84 al~~lr~~~---~~iPvigiiep~~~~~~~~~~IGVLaT~~Ti~s~~y~~~l~~~~~~~~V~~~~~~~lV~~vE~g~~~~ 160 (268)
T 3out_A 84 AKDIVQEIA---KAIPVIDVITAGVSLVDNLNTVGVIATPATINSNAYALQIHKKNPNIEVYSNPCGLFVSMIEEGFVSG 160 (268)
T ss_dssp HHHHHHHHH---TTSCEEEHHHHHHHTTTTCSEEEEEECHHHHHHTHHHHHHHHHCTTSEEEEEECTTHHHHHHTTCCSS
T ss_pred HHHHHHHhc---CCCCEEeccHHHHHHhccCCeEEEEecCcccccHHHHHHHHHhCCCCEEecCCChHHHHHHHcCCcCC
Confidence 456666544 3567665 1 11 4555433222 24566642
Q ss_pred ---HHHHHHHHHHHHHcCCCEEEe
Q psy15126 266 ---KRALMETLTCLRRGGADVIIS 286 (300)
Q Consensus 266 ---~eal~E~~~~~~r~GAD~Ii~ 286 (300)
++.+.+.+..+++.|+|.||.
T Consensus 161 ~~~~~~l~~~l~~l~~~g~D~iIL 184 (268)
T 3out_A 161 HIVELVAKEYLSYFHDKNIQALIL 184 (268)
T ss_dssp HHHHHHHHHHHGGGTTSCCSEEEE
T ss_pred HHHHHHHHHHHHHHHhCCCCEEEE
Confidence 567788888887789999885
No 150
>3khj_A Inosine-5-monophosphate dehydrogenase; enzyme-inhibitor complex, oxidoreductase; HET: IMP C64; 2.80A {Cryptosporidium parvum}
Probab=74.49 E-value=8.1 Score=36.34 Aligned_cols=55 Identities=25% Similarity=0.330 Sum_probs=39.1
Q ss_pred hhcCCceeeccCc--ch--HHHHHHHHHhhCCCCCEEeEecccccHHHHHHHhCCCCCHHHHHHHHHHHHHHcCCCEEEe
Q psy15126 211 VSQGADFLMVKPA--LP--YLDIISEVKSRHPAYPLFVYQVSGEYAMLAFAAQAGALDLKRALMETLTCLRRGGADVIIS 286 (300)
Q Consensus 211 a~~GADivmVkPs--mm--~ld~Ir~~~d~~~~vpi~aY~vSgeY~~~r~Aa~~~~~n~~eal~E~~~~~~r~GAD~Ii~ 286 (300)
+++|||+|.|-.+ .+ .++.|+++++.+ ++||++-++ .+.++ .+.+.++|||.|.+
T Consensus 114 ~eaGad~I~ld~a~G~~~~~~~~i~~i~~~~-~~~Vivg~v---------------~t~e~-----A~~l~~aGaD~I~V 172 (361)
T 3khj_A 114 VEAGVDVIVLDSAHGHSLNIIRTLKEIKSKM-NIDVIVGNV---------------VTEEA-----TKELIENGADGIKV 172 (361)
T ss_dssp HHTTCSEEEECCSCCSBHHHHHHHHHHHHHC-CCEEEEEEE---------------CSHHH-----HHHHHHTTCSEEEE
T ss_pred HHcCcCeEEEeCCCCCcHHHHHHHHHHHHhc-CCcEEEccC---------------CCHHH-----HHHHHHcCcCEEEE
Confidence 6899999976332 22 688999999988 899998544 23222 23344789999998
No 151
>1zuw_A Glutamate racemase 1; (R)-glutamate, peptidoglycan biosynthesi isomerase; HET: DGL; 1.75A {Bacillus subtilis}
Probab=74.15 E-value=47 Score=29.47 Aligned_cols=52 Identities=17% Similarity=0.214 Sum_probs=36.5
Q ss_pred HHHHHHHhCCCc--EEEeeecCCCCCCCCcceeeCCCCceecHHhHHHHHHHHHHHHH-cCCCcccc
Q psy15126 21 VIPMIRKQFPSL--TIACDVCLCGYTSHGHCAIFNEDGSIHYEKTLKRLADISKAFSD-AGAHIVAP 84 (300)
Q Consensus 21 ~i~~ik~~~p~l--~i~~Dvclc~yt~hGHcgi~~~~g~i~nd~Tl~~l~~~A~~~A~-aGad~vAP 84 (300)
..+.|++..|+- +-++|..-.||.. -..+.-.+++.+.+..+.+ .|+++|..
T Consensus 18 v~~~i~~~lP~~~~iy~~D~~~~PyG~------------~s~~~i~~~~~~~~~~L~~~~g~d~iVi 72 (272)
T 1zuw_A 18 VAKEIMRQLPKENIIYVGDTKRCPYGP------------RPEEEVLQYTWELTNYLLENHHIKMLVI 72 (272)
T ss_dssp HHHHHHHHSTTCCEEEEECGGGCCCSS------------SCHHHHHHHHHHHHHHHHHHSCCSEEEE
T ss_pred HHHHHHHhCCCCcEEEeccCCCCCCCC------------CCHHHHHHHHHHHHHHHHhhcCCCEEEE
Confidence 588999999974 4459999999822 1233344455666666777 89998887
No 152
>2pcq_A Putative dihydrodipicolinate synthase; lyase, lysine biosynthesis, dihydrodipicoliante, S genomics, NPPSFA; 2.10A {Thermus thermophilus}
Probab=74.13 E-value=7.3 Score=35.06 Aligned_cols=77 Identities=18% Similarity=0.178 Sum_probs=47.5
Q ss_pred ccCCCcccchHhHHHHHHHHHhhhcccccCCCCCccccchhhhcCCceeeccC------cch---HHHHHHHHHhhCCCC
Q psy15126 170 FNEDGSIHYEKTLKRLADISKAFSDAVYVPNHNTDRFQARDVSQGADFLMVKP------ALP---YLDIISEVKSRHPAY 240 (300)
Q Consensus 170 ~~~~g~i~nd~tl~~l~~~a~~~a~~~~~~~~n~~~~~~~Da~~GADivmVkP------smm---~ld~Ir~~~d~~~~v 240 (300)
|++||+|+.+..-+.+... ++. +|-|.|.= ++. +..+++.+.+ ++
T Consensus 10 f~~dg~iD~~~l~~lv~~l----------------------i~~-v~gl~v~GttGE~~~Ls~~Er~~v~~~~~~---rv 63 (283)
T 2pcq_A 10 FDREGRLDEEAFRELAQAL----------------------EPL-VDGLLVYGSNGEGVHLTPEERARGLRALRP---RK 63 (283)
T ss_dssp BCTTCCBCHHHHHHHHHHH----------------------GGG-SSCCEETCTTTTGGGSCHHHHHHHHHTCCC---SS
T ss_pred CCCCCCcCHHHHHHHHHHH----------------------Hhh-CCEEEECCcCcCchhcCHHHHHHHHHHHHh---CC
Confidence 4678888777654433333 455 66665532 221 6777777666 68
Q ss_pred CEEeEecccccHHHHHHHhCCCCCHHHHHHHHHHHHHHcCCCEEEec
Q psy15126 241 PLFVYQVSGEYAMLAFAAQAGALDLKRALMETLTCLRRGGADVIISY 287 (300)
Q Consensus 241 pi~aY~vSgeY~~~r~Aa~~~~~n~~eal~E~~~~~~r~GAD~Ii~y 287 (300)
||++= + |-.+.++++..+-... +.|||.+++-
T Consensus 64 pviaG-v-------------g~~~t~~ai~la~~A~-~~Gadavlv~ 95 (283)
T 2pcq_A 64 PFLVG-L-------------MEETLPQAEGALLEAK-AAGAMALLAT 95 (283)
T ss_dssp CCEEE-E-------------CCSSHHHHHHHHHHHH-HHTCSEEEEC
T ss_pred cEEEe-C-------------CCCCHHHHHHHHHHHH-hcCCCEEEec
Confidence 99865 2 2236677765555444 6899998873
No 153
>2jfq_A Glutamate racemase; cell WALL, isomerase, cell shape, peptidoglycan synthesis, peptidoglycan biosynthesis; HET: DGL; 2.15A {Staphylococcus aureus}
Probab=74.02 E-value=30 Score=31.03 Aligned_cols=53 Identities=17% Similarity=0.270 Sum_probs=37.3
Q ss_pred HHHHHHHHhCCC--cEEEeeecCCCCCCCCcceeeCCCCceecHHhHHHHHHHHHHHHHcCCCcccc
Q psy15126 20 QVIPMIRKQFPS--LTIACDVCLCGYTSHGHCAIFNEDGSIHYEKTLKRLADISKAFSDAGAHIVAP 84 (300)
Q Consensus 20 ~~i~~ik~~~p~--l~i~~Dvclc~yt~hGHcgi~~~~g~i~nd~Tl~~l~~~A~~~A~aGad~vAP 84 (300)
...+.|++..|+ ++-++|..-.||- .-..+.-.+++.+.+..+.+.|+++|..
T Consensus 36 tv~~~i~~~~P~~~~iy~~D~~~~Pyg------------~~s~~~i~~~~~~~~~~L~~~g~d~IVI 90 (286)
T 2jfq_A 36 TVAKEIMRQLPNETIYYLGDIGRCPYG------------PRPGEQVKQYTVEIARKLMEFDIKMLVI 90 (286)
T ss_dssp HHHHHHHHHCTTCCEEEEECTTTCCCT------------TSCHHHHHHHHHHHHHHHTTSCCSEEEE
T ss_pred HHHHHHHHHCCCccEEEeccCCCCCcC------------CCCHHHHHHHHHHHHHHHHHCCCCEEEE
Confidence 357888999996 3445898888882 2233445566677777777889998877
No 154
>3ffs_A Inosine-5-monophosphate dehydrogenase; beta-alpha barrel, TIM fold, oxidoreductase; 3.19A {Cryptosporidium parvum}
Probab=73.40 E-value=7.4 Score=37.48 Aligned_cols=55 Identities=24% Similarity=0.315 Sum_probs=39.4
Q ss_pred hhcCCceeec--cCcch--HHHHHHHHHhhCCCCCEEeEecccccHHHHHHHhCCCCCHHHHHHHHHHHHHHcCCCEEEe
Q psy15126 211 VSQGADFLMV--KPALP--YLDIISEVKSRHPAYPLFVYQVSGEYAMLAFAAQAGALDLKRALMETLTCLRRGGADVIIS 286 (300)
Q Consensus 211 a~~GADivmV--kPsmm--~ld~Ir~~~d~~~~vpi~aY~vSgeY~~~r~Aa~~~~~n~~eal~E~~~~~~r~GAD~Ii~ 286 (300)
+++|+|+|.+ ....+ .++.|+++++.+ ++||++=+| .+.++| +.+.++|||.|.+
T Consensus 153 veaGvdvIvldta~G~~~~~~e~I~~ik~~~-~i~Vi~g~V---------------~t~e~A-----~~a~~aGAD~I~v 211 (400)
T 3ffs_A 153 VEAGVDVIVLDSAHGHSLNIIRTLKEIKSKM-NIDVIVGNV---------------VTEEAT-----KELIENGADGIKV 211 (400)
T ss_dssp HHHTCSEEEECCSCCSBHHHHHHHHHHHTTC-CCEEEEEEE---------------CSHHHH-----HHHHHTTCSEEEE
T ss_pred HHcCCCEEEEeCCCCCcccHHHHHHHHHhcC-CCeEEEeec---------------CCHHHH-----HHHHHcCCCEEEE
Confidence 6899999976 44333 689999999988 799987544 233222 2333789999998
No 155
>1s2w_A Phosphoenolpyruvate phosphomutase; phosphonopyruvate, phosphonate biosynthesis pathway, isomera; 1.69A {Mytilus edulis} SCOP: c.1.12.7 PDB: 1m1b_A 1s2t_A 1s2v_A 1pym_A 1s2u_A
Probab=73.24 E-value=3.7 Score=37.97 Aligned_cols=79 Identities=14% Similarity=0.130 Sum_probs=44.4
Q ss_pred HHHHHHHHHhhhcccccCCCCCccccchhhhcCCceeeccCcchHHHHHHHHHhhC-CCCCEEeEecccccH--HHHHHH
Q psy15126 182 LKRLADISKAFSDAVYVPNHNTDRFQARDVSQGADFLMVKPALPYLDIISEVKSRH-PAYPLFVYQVSGEYA--MLAFAA 258 (300)
Q Consensus 182 l~~l~~~a~~~a~~~~~~~~n~~~~~~~Da~~GADivmVkPsmm~ld~Ir~~~d~~-~~vpi~aY~vSgeY~--~~r~Aa 258 (300)
++.+.+-|+++ .++|||+|++.+..+-.+.++++-++. ..+|+++= -++|+ +...-.
T Consensus 169 ~~~ai~Ra~ay------------------~eAGAd~i~~e~~~~~~~~~~~i~~~~~~~~P~i~~--~~~~~~~~~~eL~ 228 (295)
T 1s2w_A 169 LDEALKRAEAY------------------RNAGADAILMHSKKADPSDIEAFMKAWNNQGPVVIV--PTKYYKTPTDHFR 228 (295)
T ss_dssp HHHHHHHHHHH------------------HHTTCSEEEECCCSSSSHHHHHHHHHHTTCSCEEEC--CSTTTTSCHHHHH
T ss_pred HHHHHHHHHHH------------------HHcCCCEEEEcCCCCCHHHHHHHHHHcCCCCCEEEe--CCCCCCCCHHHHH
Confidence 55666667777 799999998865444455555555553 23888743 22443 233333
Q ss_pred hCCC----------CCHHHHHHHHHHHHHHcC
Q psy15126 259 QAGA----------LDLKRALMETLTCLRRGG 280 (300)
Q Consensus 259 ~~~~----------~n~~eal~E~~~~~~r~G 280 (300)
++|+ .-.-.++.+.+..+++.|
T Consensus 229 ~lGv~~v~~~~~~~raa~~a~~~~~~~i~~~g 260 (295)
T 1s2w_A 229 DMGVSMVIWANHNLRASVSAIQQTTKQIYDDQ 260 (295)
T ss_dssp HHTCCEEEECSHHHHHHHHHHHHHHHHHHHHS
T ss_pred HcCCcEEEEChHHHHHHHHHHHHHHHHHHHcC
Confidence 3331 112345566666665555
No 156
>1mvo_A PHOP response regulator; phosphate regulon, transcriptional regulatory protein, alpha/beta doubly wound fold, phosphorylation; 1.60A {Bacillus subtilis} SCOP: c.23.1.1
Probab=73.20 E-value=7.6 Score=28.43 Aligned_cols=40 Identities=13% Similarity=0.453 Sum_probs=29.7
Q ss_pred hcCCceeeccCcch---HHHHHHHHHhhCCCCCEEeEeccccc
Q psy15126 212 SQGADFLMVKPALP---YLDIISEVKSRHPAYPLFVYQVSGEY 251 (300)
Q Consensus 212 ~~GADivmVkPsmm---~ld~Ir~~~d~~~~vpi~aY~vSgeY 251 (300)
+...|+|++-..|+ -++.++++++..+.+||+..+.+...
T Consensus 45 ~~~~dlvl~D~~l~~~~g~~~~~~l~~~~~~~~ii~~s~~~~~ 87 (136)
T 1mvo_A 45 TEKPDLIVLDVMLPKLDGIEVCKQLRQQKLMFPILMLTAKDEE 87 (136)
T ss_dssp HHCCSEEEEESSCSSSCHHHHHHHHHHTTCCCCEEEEECTTCC
T ss_pred hcCCCEEEEecCCCCCCHHHHHHHHHcCCCCCCEEEEECCCCH
Confidence 34579998875543 67888988887788999998764444
No 157
>2vvt_A Glutamate racemase; isomerase, peptidoglycan synthesis, cell WALL biogenesis/degradation, cell shape, benzyl purine, MURI inhibitor; HET: I24 DGL; 1.65A {Enterococcus faecalis} PDB: 2jfp_A* 2jfo_A* 2jfu_A 2jfv_A* 2jfw_A*
Probab=73.06 E-value=37 Score=30.51 Aligned_cols=166 Identities=17% Similarity=0.216 Sum_probs=89.9
Q ss_pred HHHHHHHHhCCCc--EEEeeecCCCCCCCCcceeeCCCCceecHHhHHHHHHHHHHHHHcCCCccccCCCCcc--hHHHH
Q psy15126 20 QVIPMIRKQFPSL--TIACDVCLCGYTSHGHCAIFNEDGSIHYEKTLKRLADISKAFSDAGAHIVAPSDMMDN--RIHAI 95 (300)
Q Consensus 20 ~~i~~ik~~~p~l--~i~~Dvclc~yt~hGHcgi~~~~g~i~nd~Tl~~l~~~A~~~A~aGad~vAPSdmMDg--rv~ai 95 (300)
...+.|++..|+- +-.+|..-+||-. -..+.-.+++.+.+..+.+.|+++|....--+- -+..+
T Consensus 38 tv~~~i~~~~P~~~~iy~~D~~~~pyG~------------~s~~~i~~~~~~~~~~L~~~g~d~IVIACNTas~~~l~~l 105 (290)
T 2vvt_A 38 TVLKEALKQLPNERLIYLGDTARCPYGP------------RPAEQVVQFTWEMADFLLKKRIKMLVIACNTATAVALEEI 105 (290)
T ss_dssp HHHHHHHHHCTTSCEEEEECTTTCCCTT------------SCHHHHHHHHHHHHHHHHTTTCSEEEECCHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCccEEEecccccCCCCC------------CCHHHHHHHHHHHHHHHHHCCCCEEEEeCcchhHHHHHHH
Confidence 4889999999963 3348988888832 123344556666666777789998876222111 13333
Q ss_pred HHH----------------HhhCCCCCCcccccchhhhhcccchhhhhhhcCCCCCCCcceeeCCCCCCceEEEEeeccc
Q psy15126 96 KQS----------------LFTSRQSSTTGLLSYSAKFCSAFYGPFREAAGSAPTFGDRSCYQLPCGSKGLAIRAAVCLC 159 (300)
Q Consensus 96 r~a----------------Ld~~g~~~~v~ImsysaK~aS~~YGPfRda~gS~~~~gdr~~yQ~~~~~~~~ai~~dvclc 159 (300)
|+. +...+- .+++|++=.....|.+| ++.+... +++.-+...-|.
T Consensus 106 r~~~~iPVigiiepa~~~A~~~~~~-~rIgVLaT~~T~~s~~y---~~~l~~~--------------~~~~~v~~~~~~- 166 (290)
T 2vvt_A 106 KAALPIPVVGVILPGARAAVKVTKN-NKIGVIGTLGTIKSASY---EIAIKSK--------------APAIEVTSLACP- 166 (290)
T ss_dssp HHHCSSCEEESSHHHHHHHHHHCSS-SEEEEEECHHHHHTTHH---HHHHHTT--------------CTTSEEEEEECT-
T ss_pred HHhCCCCEEcccHHHHHHHHHhcCC-CEEEEEeCcHhhhhHHH---HHHHHHh--------------CCCCEEEeccCH-
Confidence 333 322233 35566554444444443 2222221 222223322221
Q ss_pred CCCCCCccccc--cCCCcccchHhHHHHHHHHHhhhcccccCCCCCccccchhhhcCCceeeccCc-ch-HHHHHHHHHh
Q psy15126 160 GYTSHGHCAIF--NEDGSIHYEKTLKRLADISKAFSDAVYVPNHNTDRFQARDVSQGADFLMVKPA-LP-YLDIISEVKS 235 (300)
Q Consensus 160 ~yt~hGHcgi~--~~~g~i~nd~tl~~l~~~a~~~a~~~~~~~~n~~~~~~~Da~~GADivmVkPs-mm-~ld~Ir~~~d 235 (300)
+++ -|.|.++.+.+.+.+.+....+ .+.|+|.|+..=. ++ ..+.|++.+.
T Consensus 167 --------~lv~~ve~g~~~~~~~~~~l~~~l~~l------------------~~~g~D~IVLGCTh~p~l~~~i~~~l~ 220 (290)
T 2vvt_A 167 --------KFVPIVESNQYRSSVAKKIVAETLQAL------------------QLKGLDTLILGCTHYPLLRPVIQNVMG 220 (290)
T ss_dssp --------THHHHHHTTCTTSHHHHHHHHHHHGGG------------------TTSCCSEEEECSTTGGGGHHHHHHHHC
T ss_pred --------HHHHHHHcCCCCCHHHHHHHHHHHHHH------------------HhCCCCEEEECCcCHHHHHHHHHHHcC
Confidence 122 2457776677777766665443 3579999876655 55 4555665553
Q ss_pred hCCCCCEEe
Q psy15126 236 RHPAYPLFV 244 (300)
Q Consensus 236 ~~~~vpi~a 244 (300)
+++|++-
T Consensus 221 --~~vpvID 227 (290)
T 2vvt_A 221 --SHVTLID 227 (290)
T ss_dssp --TTCEEEE
T ss_pred --CCCeEEC
Confidence 3577653
No 158
>1srr_A SPO0F, sporulation response regulatory protein; aspartate pocket, two component system; 1.90A {Bacillus subtilis} SCOP: c.23.1.1 PDB: 1pey_A 3q15_C 2ftk_E* 1fsp_A 1nat_A 1pux_A 2fsp_A 2jvj_A 2jvk_A 2jvi_A 1f51_E
Probab=72.94 E-value=9.1 Score=27.64 Aligned_cols=35 Identities=9% Similarity=0.267 Sum_probs=26.6
Q ss_pred cCCceeeccCcc---hHHHHHHHHHhhCCCCCEEeEec
Q psy15126 213 QGADFLMVKPAL---PYLDIISEVKSRHPAYPLFVYQV 247 (300)
Q Consensus 213 ~GADivmVkPsm---m~ld~Ir~~~d~~~~vpi~aY~v 247 (300)
...|+|++--.| .-++.++++++.++++||+..+.
T Consensus 46 ~~~dlvl~D~~l~~~~g~~~~~~l~~~~~~~~ii~~s~ 83 (124)
T 1srr_A 46 ERPDLVLLDMKIPGMDGIEILKRMKVIDENIRVIIMTA 83 (124)
T ss_dssp HCCSEEEEESCCTTCCHHHHHHHHHHHCTTCEEEEEES
T ss_pred cCCCEEEEecCCCCCCHHHHHHHHHHhCCCCCEEEEEc
Confidence 457888876443 46788888888788999998865
No 159
>2pln_A HP1043, response regulator; signaling protein; 1.80A {Helicobacter pylori} PDB: 2hqo_A
Probab=72.65 E-value=10 Score=28.02 Aligned_cols=57 Identities=19% Similarity=0.218 Sum_probs=39.1
Q ss_pred hcCCceeeccCcchHHHHHHHHHhhCC-CCCEEeEecccccHHHHHHHhCCCCCHHHHHHHHHHHHHHcCCCEEEecch
Q psy15126 212 SQGADFLMVKPALPYLDIISEVKSRHP-AYPLFVYQVSGEYAMLAFAAQAGALDLKRALMETLTCLRRGGADVIISYYT 289 (300)
Q Consensus 212 ~~GADivmVkPsmm~ld~Ir~~~d~~~-~vpi~aY~vSgeY~~~r~Aa~~~~~n~~eal~E~~~~~~r~GAD~Ii~y~A 289 (300)
+...|+|+ -|.+.-++.++++++. + ++||+..+... +. + .....+ +.||+-.+.||-
T Consensus 60 ~~~~dlvi-~~~~~g~~~~~~l~~~-~~~~~ii~ls~~~--------------~~-~---~~~~~~-~~g~~~~l~kP~ 117 (137)
T 2pln_A 60 IRNYDLVM-VSDKNALSFVSRIKEK-HSSIVVLVSSDNP--------------TS-E---EEVHAF-EQGADDYIAKPY 117 (137)
T ss_dssp HSCCSEEE-ECSTTHHHHHHHHHHH-STTSEEEEEESSC--------------CH-H---HHHHHH-HTTCSEEEESSC
T ss_pred cCCCCEEE-EcCccHHHHHHHHHhc-CCCccEEEEeCCC--------------CH-H---HHHHHH-HcCCceeeeCCC
Confidence 45679988 6666678888888887 7 89999986422 11 1 112233 689999999985
No 160
>4dad_A Putative pilus assembly-related protein; response regulator receiver domain, CHEY-related protein, ST genomics; 2.50A {Burkholderia pseudomallei} PDB: 4dn6_A
Probab=72.55 E-value=27 Score=25.93 Aligned_cols=57 Identities=19% Similarity=0.337 Sum_probs=39.6
Q ss_pred cCCceeeccCcch---HHHHHHHHHhhCCCCCEEeEecccccHHHHHHHhCCCCCHHHHHHHHHHHHHHcCCCEEEecc
Q psy15126 213 QGADFLMVKPALP---YLDIISEVKSRHPAYPLFVYQVSGEYAMLAFAAQAGALDLKRALMETLTCLRRGGADVIISYY 288 (300)
Q Consensus 213 ~GADivmVkPsmm---~ld~Ir~~~d~~~~vpi~aY~vSgeY~~~r~Aa~~~~~n~~eal~E~~~~~~r~GAD~Ii~y~ 288 (300)
.-.|+|++--.|+ -++.++++++.++++||+..+... +. +. ....+ +.||+-.+.||
T Consensus 66 ~~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~ii~lt~~~--------------~~-~~---~~~~~-~~ga~~~l~Kp 125 (146)
T 4dad_A 66 DAFDILMIDGAALDTAELAAIEKLSRLHPGLTCLLVTTDA--------------SS-QT---LLDAM-RAGVRDVLRWP 125 (146)
T ss_dssp TTCSEEEEECTTCCHHHHHHHHHHHHHCTTCEEEEEESCC--------------CH-HH---HHHHH-TTTEEEEEESS
T ss_pred CCCCEEEEeCCCCCccHHHHHHHHHHhCCCCcEEEEeCCC--------------CH-HH---HHHHH-HhCCceeEcCC
Confidence 5679998876654 688899998888899999986422 11 11 11233 67888888887
No 161
>3kcn_A Adenylate cyclase homolog; SGX, PSI 2, structural genomics, protein structure initiative; 2.45A {Rhodopirellula baltica}
Probab=72.33 E-value=23 Score=26.62 Aligned_cols=33 Identities=15% Similarity=0.250 Sum_probs=26.8
Q ss_pred CceeeccCcch---HHHHHHHHHhhCCCCCEEeEec
Q psy15126 215 ADFLMVKPALP---YLDIISEVKSRHPAYPLFVYQV 247 (300)
Q Consensus 215 ADivmVkPsmm---~ld~Ir~~~d~~~~vpi~aY~v 247 (300)
.|+|++--.|+ -++.++++++.++++||+..+.
T Consensus 49 ~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~ii~~s~ 84 (151)
T 3kcn_A 49 FSVIMVDMRMPGMEGTEVIQKARLISPNSVYLMLTG 84 (151)
T ss_dssp CSEEEEESCCSSSCHHHHHHHHHHHCSSCEEEEEEC
T ss_pred CCEEEEeCCCCCCcHHHHHHHHHhcCCCcEEEEEEC
Confidence 39998875543 6889999998889999999865
No 162
>3igs_A N-acetylmannosamine-6-phosphate 2-epimerase 2; energy metabolism, sugars, csgid, carbohydrate metabolism, isomerase; HET: MSE 16G; 1.50A {Salmonella enterica subsp} SCOP: c.1.2.0
Probab=72.09 E-value=30 Score=30.31 Aligned_cols=89 Identities=12% Similarity=-0.005 Sum_probs=53.7
Q ss_pred chHhHHHHHHHHHhhhcccccCCCCCccccchhhhcCCceeecc---------CcchHHHHHHHHHhhCCCCCEEeEecc
Q psy15126 178 YEKTLKRLADISKAFSDAVYVPNHNTDRFQARDVSQGADFLMVK---------PALPYLDIISEVKSRHPAYPLFVYQVS 248 (300)
Q Consensus 178 nd~tl~~l~~~a~~~a~~~~~~~~n~~~~~~~Da~~GADivmVk---------Psmm~ld~Ir~~~d~~~~vpi~aY~vS 248 (300)
+.++++.+.+.+..+--.+-+..|+.+ ...+=.+.|||+|.+. +..+-++.++++++. ++|+++= +
T Consensus 114 ~p~~l~~~i~~~~~~g~~v~~~v~t~e-ea~~a~~~Gad~Ig~~~~g~t~~~~~~~~~~~~i~~l~~~--~ipvIA~--G 188 (232)
T 3igs_A 114 RPVAVEALLARIHHHHLLTMADCSSVD-DGLACQRLGADIIGTTMSGYTTPDTPEEPDLPLVKALHDA--GCRVIAE--G 188 (232)
T ss_dssp CSSCHHHHHHHHHHTTCEEEEECCSHH-HHHHHHHTTCSEEECTTTTSSSSSCCSSCCHHHHHHHHHT--TCCEEEE--S
T ss_pred CHHHHHHHHHHHHHCCCEEEEeCCCHH-HHHHHHhCCCCEEEEcCccCCCCCCCCCCCHHHHHHHHhc--CCcEEEE--C
Confidence 345677777777665334444555533 3344467999999542 222367888888875 7999876 2
Q ss_pred cccHHHHHHHhCCCCCHHHHHHHHHHHHHHcCCCEEEecc
Q psy15126 249 GEYAMLAFAAQAGALDLKRALMETLTCLRRGGADVIISYY 288 (300)
Q Consensus 249 geY~~~r~Aa~~~~~n~~eal~E~~~~~~r~GAD~Ii~y~ 288 (300)
| ..+.++ +..+++.|||.+++--
T Consensus 189 G------------I~t~~d-----~~~~~~~GadgV~VGs 211 (232)
T 3igs_A 189 R------------YNSPAL-----AAEAIRYGAWAVTVGS 211 (232)
T ss_dssp C------------CCSHHH-----HHHHHHTTCSEEEECH
T ss_pred C------------CCCHHH-----HHHHHHcCCCEEEEeh
Confidence 2 223322 2233367999998753
No 163
>3qfe_A Putative dihydrodipicolinate synthase family PROT; seattle structural genomics center for infectious disease, S coccidioides, valley fever; 2.35A {Coccidioides immitis}
Probab=71.52 E-value=31 Score=31.60 Aligned_cols=52 Identities=6% Similarity=0.011 Sum_probs=32.9
Q ss_pred CCCceecHHhHHHHHHHHHHHHHcCCCcccc--------CCCCcchHHHHHHHHhhCCCCCCcccc
Q psy15126 54 EDGSIHYEKTLKRLADISKAFSDAGAHIVAP--------SDMMDNRIHAIKQSLFTSRQSSTTGLL 111 (300)
Q Consensus 54 ~~g~i~nd~Tl~~l~~~A~~~A~aGad~vAP--------SdmMDgrv~air~aLd~~g~~~~v~Im 111 (300)
++|+||.+. +.+....+.+.|+|-+.+ +-..+-|...++...+..+= +++|+
T Consensus 25 ~dg~iD~~~----l~~lv~~li~~Gv~gl~v~GtTGE~~~Ls~~Er~~v~~~~~~~~~g--rvpvi 84 (318)
T 3qfe_A 25 KTDTLDLAS----QERYYAYLARSGLTGLVILGTNAEAFLLTREERAQLIATARKAVGP--DFPIM 84 (318)
T ss_dssp TTTEECHHH----HHHHHHHHHTTTCSEEEESSGGGTGGGSCHHHHHHHHHHHHHHHCT--TSCEE
T ss_pred CCCCCCHHH----HHHHHHHHHHcCCCEEEeCccccChhhCCHHHHHHHHHHHHHHhCC--CCcEE
Confidence 577877543 444455677889998766 44566677777776666532 34554
No 164
>1eep_A Inosine 5'-monophosphate dehydrogenase; alpha-beta barrel, TIM barrel, IMPDH, IMP dehydrogenase, LOO purine biosynthesis, oxidoreductase; 2.40A {Borrelia burgdorferi} SCOP: c.1.5.1
Probab=71.49 E-value=15 Score=34.27 Aligned_cols=56 Identities=20% Similarity=0.336 Sum_probs=38.0
Q ss_pred hhcCCceeeccC--cch--HHHHHHHHHhhCCCCCEEeEecccccHHHHHHHhCCCCCHHHHHHHHHHHHHHcCCCEEEe
Q psy15126 211 VSQGADFLMVKP--ALP--YLDIISEVKSRHPAYPLFVYQVSGEYAMLAFAAQAGALDLKRALMETLTCLRRGGADVIIS 286 (300)
Q Consensus 211 a~~GADivmVkP--smm--~ld~Ir~~~d~~~~vpi~aY~vSgeY~~~r~Aa~~~~~n~~eal~E~~~~~~r~GAD~Ii~ 286 (300)
+++|+|+|.+-+ ..+ .++.|+++++.++++||+.-.+ .+.+ ....+.++|||.|.+
T Consensus 162 ~~~G~d~i~i~~~~g~~~~~~e~i~~ir~~~~~~pviv~~v---------------~~~~-----~a~~a~~~Gad~I~v 221 (404)
T 1eep_A 162 VKAHVDILVIDSAHGHSTRIIELIKKIKTKYPNLDLIAGNI---------------VTKE-----AALDLISVGADCLKV 221 (404)
T ss_dssp HHTTCSEEEECCSCCSSHHHHHHHHHHHHHCTTCEEEEEEE---------------CSHH-----HHHHHHTTTCSEEEE
T ss_pred HHCCCCEEEEeCCCCChHHHHHHHHHHHHHCCCCeEEEcCC---------------CcHH-----HHHHHHhcCCCEEEE
Confidence 578999987633 233 6888999988887899987333 2222 222333689999988
No 165
>3crn_A Response regulator receiver domain protein, CHEY-; structural genomics, signal regulator receiver domain; HET: PHD; 1.58A {Methanospirillum hungatei jf-1}
Probab=71.42 E-value=28 Score=25.57 Aligned_cols=58 Identities=12% Similarity=0.140 Sum_probs=38.9
Q ss_pred hcCCceeeccCcc---hHHHHHHHHHhhCCCCCEEeEecccccHHHHHHHhCCCCCHHHHHHHHHHHHHHcCCCEEEecc
Q psy15126 212 SQGADFLMVKPAL---PYLDIISEVKSRHPAYPLFVYQVSGEYAMLAFAAQAGALDLKRALMETLTCLRRGGADVIISYY 288 (300)
Q Consensus 212 ~~GADivmVkPsm---m~ld~Ir~~~d~~~~vpi~aY~vSgeY~~~r~Aa~~~~~n~~eal~E~~~~~~r~GAD~Ii~y~ 288 (300)
+...|+|++--.| .-++.++++++..+++||+..+....-. +....+ +.||+-.+.||
T Consensus 45 ~~~~dlvl~D~~l~~~~g~~~~~~l~~~~~~~~ii~~s~~~~~~------------------~~~~~~-~~ga~~~l~KP 105 (132)
T 3crn_A 45 NEFFNLALFXIKLPDMEGTELLEKAHKLRPGMKKIMVTGYASLE------------------NSVFSL-NAGADAYIMKP 105 (132)
T ss_dssp HSCCSEEEECSBCSSSBHHHHHHHHHHHCTTSEEEEEESCCCHH------------------HHHHHH-HTTCSEEEESS
T ss_pred cCCCCEEEEecCCCCCchHHHHHHHHhhCCCCcEEEEeccccHH------------------HHHHHH-hccchhhccCC
Confidence 4457998887544 3678888888877889999886522211 112233 57888888887
No 166
>1vrd_A Inosine-5'-monophosphate dehydrogenase; TM1347, structural G joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.18A {Thermotoga maritima} SCOP: c.1.5.1
Probab=71.30 E-value=28 Score=33.24 Aligned_cols=56 Identities=20% Similarity=0.379 Sum_probs=39.6
Q ss_pred hhcCCceeeccCc--ch--HHHHHHHHHhhCCCCCEEeEecccccHHHHHHHhCCCCCHHHHHHHHHHHHHHcCCCEEEe
Q psy15126 211 VSQGADFLMVKPA--LP--YLDIISEVKSRHPAYPLFVYQVSGEYAMLAFAAQAGALDLKRALMETLTCLRRGGADVIIS 286 (300)
Q Consensus 211 a~~GADivmVkPs--mm--~ld~Ir~~~d~~~~vpi~aY~vSgeY~~~r~Aa~~~~~n~~eal~E~~~~~~r~GAD~Ii~ 286 (300)
+++|+|.|.+--+ .. .++.|+++++.+|++||..=. ..+.+++ ..+.++|||.|.+
T Consensus 246 ~~aGvd~v~i~~~~G~~~~~~e~i~~i~~~~p~~pvi~g~---------------~~t~e~a-----~~l~~~G~d~I~v 305 (494)
T 1vrd_A 246 VKAGVDVIVIDTAHGHSRRVIETLEMIKADYPDLPVVAGN---------------VATPEGT-----EALIKAGADAVKV 305 (494)
T ss_dssp HHTTCSEEEECCSCCSSHHHHHHHHHHHHHCTTSCEEEEE---------------ECSHHHH-----HHHHHTTCSEEEE
T ss_pred HHhCCCEEEEEecCCchHHHHHHHHHHHHHCCCceEEeCC---------------cCCHHHH-----HHHHHcCCCEEEE
Confidence 6889999976333 22 789999999998889987621 2344443 3334689999987
No 167
>3cnb_A DNA-binding response regulator, MERR family; signal receiver domain, DNA binding protein, protein structu initiative, PSI-2; 2.00A {Colwellia psychrerythraea}
Probab=70.94 E-value=28 Score=25.39 Aligned_cols=58 Identities=12% Similarity=0.050 Sum_probs=39.1
Q ss_pred hcCCceeeccCcc---hHHHHHHHHHh--hCCCCCEEeEecccccHHHHHHHhCCCCCHHHHHHHHHHHHHHcCCCEEEe
Q psy15126 212 SQGADFLMVKPAL---PYLDIISEVKS--RHPAYPLFVYQVSGEYAMLAFAAQAGALDLKRALMETLTCLRRGGADVIIS 286 (300)
Q Consensus 212 ~~GADivmVkPsm---m~ld~Ir~~~d--~~~~vpi~aY~vSgeY~~~r~Aa~~~~~n~~eal~E~~~~~~r~GAD~Ii~ 286 (300)
+...|+|++--.+ .-++.++++++ .++++||+..+....... ....+ +.||+-++.
T Consensus 52 ~~~~dlii~d~~l~~~~g~~~~~~l~~~~~~~~~~ii~~s~~~~~~~------------------~~~~~-~~g~~~~l~ 112 (143)
T 3cnb_A 52 TVKPDVVMLDLMMVGMDGFSICHRIKSTPATANIIVIAMTGALTDDN------------------VSRIV-ALGAETCFG 112 (143)
T ss_dssp HTCCSEEEEETTCTTSCHHHHHHHHHTSTTTTTSEEEEEESSCCHHH------------------HHHHH-HTTCSEEEE
T ss_pred hcCCCEEEEecccCCCcHHHHHHHHHhCccccCCcEEEEeCCCCHHH------------------HHHHH-hcCCcEEEe
Confidence 3457999887554 36888999988 578999999865322111 11233 578888888
Q ss_pred cc
Q psy15126 287 YY 288 (300)
Q Consensus 287 y~ 288 (300)
||
T Consensus 113 kP 114 (143)
T 3cnb_A 113 KP 114 (143)
T ss_dssp SS
T ss_pred CC
Confidence 87
No 168
>3cz5_A Two-component response regulator, LUXR family; structural genomics, protein structure initiative; 2.70A {Aurantimonas SP}
Probab=70.55 E-value=14 Score=27.94 Aligned_cols=38 Identities=8% Similarity=0.243 Sum_probs=29.0
Q ss_pred hcCCceeeccCcc---hHHHHHHHHHhhCCCCCEEeEeccc
Q psy15126 212 SQGADFLMVKPAL---PYLDIISEVKSRHPAYPLFVYQVSG 249 (300)
Q Consensus 212 ~~GADivmVkPsm---m~ld~Ir~~~d~~~~vpi~aY~vSg 249 (300)
+...|+|++--.+ .-++.++++++.++++||+..+...
T Consensus 49 ~~~~dlii~D~~l~~~~g~~~~~~l~~~~~~~~ii~ls~~~ 89 (153)
T 3cz5_A 49 ETTPDIVVMDLTLPGPGGIEATRHIRQWDGAARILIFTMHQ 89 (153)
T ss_dssp TTCCSEEEECSCCSSSCHHHHHHHHHHHCTTCCEEEEESCC
T ss_pred cCCCCEEEEecCCCCCCHHHHHHHHHHhCCCCeEEEEECCC
Confidence 3457999887554 3688899999888899999986533
No 169
>3t6k_A Response regulator receiver; flavodoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: MSE; 1.86A {Chloroflexus aurantiacus} SCOP: c.23.1.0
Probab=70.52 E-value=24 Score=26.25 Aligned_cols=38 Identities=18% Similarity=0.356 Sum_probs=27.4
Q ss_pred hcCCceeeccCcch---HHHHHHHHHhh--CCCCCEEeEeccc
Q psy15126 212 SQGADFLMVKPALP---YLDIISEVKSR--HPAYPLFVYQVSG 249 (300)
Q Consensus 212 ~~GADivmVkPsmm---~ld~Ir~~~d~--~~~vpi~aY~vSg 249 (300)
+...|+|++--.|+ -++.++++++. .+++||+..+...
T Consensus 46 ~~~~dlvl~D~~lp~~~g~~~~~~lr~~~~~~~~pii~~t~~~ 88 (136)
T 3t6k_A 46 KNLPDALICDVLLPGIDGYTLCKRVRQHPLTKTLPILMLTAQG 88 (136)
T ss_dssp HSCCSEEEEESCCSSSCHHHHHHHHHHSGGGTTCCEEEEECTT
T ss_pred hCCCCEEEEeCCCCCCCHHHHHHHHHcCCCcCCccEEEEecCC
Confidence 45578888775544 68888888864 5689999886533
No 170
>1y0e_A Putative N-acetylmannosamine-6-phosphate 2-epimer; mannac-6-P epimerase, NANE, structural genomics, protein STR initiative, PSI; 1.95A {Staphylococcus aureus subsp} SCOP: c.1.2.5
Probab=70.52 E-value=14 Score=30.94 Aligned_cols=73 Identities=5% Similarity=0.007 Sum_probs=44.3
Q ss_pred cccCCCCCccccchhhhcCCceeeccCc------------chHHHHHHHHHhhCCCCCEEeEecccccHHHHHHHhCCCC
Q psy15126 196 VYVPNHNTDRFQARDVSQGADFLMVKPA------------LPYLDIISEVKSRHPAYPLFVYQVSGEYAMLAFAAQAGAL 263 (300)
Q Consensus 196 ~~~~~~n~~~~~~~Da~~GADivmVkPs------------mm~ld~Ir~~~d~~~~vpi~aY~vSgeY~~~r~Aa~~~~~ 263 (300)
+.+..++.... .+-.++|+|+|++.|. .+-++.++++++.. ++||++=. |..
T Consensus 122 v~~~~~t~~e~-~~~~~~G~d~i~~~~~g~t~~~~~~~~~~~~~~~~~~~~~~~-~ipvia~G--------------GI~ 185 (223)
T 1y0e_A 122 IMADIATVEEA-KNAARLGFDYIGTTLHGYTSYTQGQLLYQNDFQFLKDVLQSV-DAKVIAEG--------------NVI 185 (223)
T ss_dssp EEEECSSHHHH-HHHHHTTCSEEECTTTTSSTTSTTCCTTHHHHHHHHHHHHHC-CSEEEEES--------------SCC
T ss_pred EEecCCCHHHH-HHHHHcCCCEEEeCCCcCcCCCCCCCCCcccHHHHHHHHhhC-CCCEEEec--------------CCC
Confidence 33444443332 2235789999988541 12567888888876 78988642 222
Q ss_pred CHHHHHHHHHHHHHHcCCCEEEecch
Q psy15126 264 DLKRALMETLTCLRRGGADVIISYYT 289 (300)
Q Consensus 264 n~~eal~E~~~~~~r~GAD~Ii~y~A 289 (300)
+.++ +..+.++|||.+++--+
T Consensus 186 ~~~~-----~~~~~~~Gad~v~vG~a 206 (223)
T 1y0e_A 186 TPDM-----YKRVMDLGVHCSVVGGA 206 (223)
T ss_dssp SHHH-----HHHHHHTTCSEEEECHH
T ss_pred CHHH-----HHHHHHcCCCEEEEChH
Confidence 4432 22344679999988644
No 171
>3f6p_A Transcriptional regulatory protein YYCF; unphosphorelated, receiver domain, cytoplasm, DNA-binding, phosphoprotein, transcription regulation; 1.95A {Bacillus subtilis} SCOP: c.23.1.1 PDB: 2zwm_A
Probab=70.15 E-value=28 Score=25.16 Aligned_cols=58 Identities=17% Similarity=0.293 Sum_probs=38.6
Q ss_pred hcCCceeeccCcch---HHHHHHHHHhhCCCCCEEeEecccccHHHHHHHhCCCCCHHHHHHHHHHHHHHcCCCEEEecc
Q psy15126 212 SQGADFLMVKPALP---YLDIISEVKSRHPAYPLFVYQVSGEYAMLAFAAQAGALDLKRALMETLTCLRRGGADVIISYY 288 (300)
Q Consensus 212 ~~GADivmVkPsmm---~ld~Ir~~~d~~~~vpi~aY~vSgeY~~~r~Aa~~~~~n~~eal~E~~~~~~r~GAD~Ii~y~ 288 (300)
+...|+|++--.|+ -++.++++++.+ ++||+..+.... .. +....+ +.||+-.++||
T Consensus 44 ~~~~dlii~D~~~p~~~g~~~~~~lr~~~-~~~ii~~t~~~~--------------~~----~~~~~~-~~ga~~~l~KP 103 (120)
T 3f6p_A 44 ELQPDLILLDIMLPNKDGVEVCREVRKKY-DMPIIMLTAKDS--------------EI----DKVIGL-EIGADDYVTKP 103 (120)
T ss_dssp TTCCSEEEEETTSTTTHHHHHHHHHHTTC-CSCEEEEEESSC--------------HH----HHHHHH-HTTCCEEEEES
T ss_pred hCCCCEEEEeCCCCCCCHHHHHHHHHhcC-CCCEEEEECCCC--------------hH----HHHHHH-hCCcceeEcCC
Confidence 45579998876554 578888888764 799998854221 11 112234 68999999998
Q ss_pred h
Q psy15126 289 T 289 (300)
Q Consensus 289 A 289 (300)
-
T Consensus 104 ~ 104 (120)
T 3f6p_A 104 F 104 (120)
T ss_dssp C
T ss_pred C
Confidence 4
No 172
>3i42_A Response regulator receiver domain protein (CHEY- like); structural genomics, PSI-2, protein structure initiative; 2.15A {Methylobacillus flagellatus KT} SCOP: c.23.1.0
Probab=70.10 E-value=8.1 Score=28.03 Aligned_cols=46 Identities=11% Similarity=0.166 Sum_probs=32.5
Q ss_pred CCccccchhhhcCCceeeccCcch---HHHHHHHHHhh--CCCCCEEeEec
Q psy15126 202 NTDRFQARDVSQGADFLMVKPALP---YLDIISEVKSR--HPAYPLFVYQV 247 (300)
Q Consensus 202 n~~~~~~~Da~~GADivmVkPsmm---~ld~Ir~~~d~--~~~vpi~aY~v 247 (300)
|.......-.+...|+|++--.|+ -++.++++++. ++++||+..+.
T Consensus 35 ~~~~a~~~l~~~~~dlii~D~~l~~~~g~~~~~~l~~~~~~~~~~ii~~s~ 85 (127)
T 3i42_A 35 SGTDALHAMSTRGYDAVFIDLNLPDTSGLALVKQLRALPMEKTSKFVAVSG 85 (127)
T ss_dssp SHHHHHHHHHHSCCSEEEEESBCSSSBHHHHHHHHHHSCCSSCCEEEEEEC
T ss_pred CHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHhhhccCCCCEEEEEC
Confidence 333333333445679998876543 68899999887 78999999865
No 173
>1jcn_A Inosine monophosphate dehydrogenase I; IMPD, IMPDH, guanine nucleotide synthesis, oxidoreductase; HET: CPR; 2.50A {Homo sapiens} SCOP: c.1.5.1 d.37.1.1 PDB: 1jr1_A* 1nf7_A* 1b3o_A* 1nfb_A*
Probab=70.01 E-value=10 Score=36.63 Aligned_cols=56 Identities=14% Similarity=0.242 Sum_probs=39.6
Q ss_pred hhcCCceeeccCc--ch--HHHHHHHHHhhCCCCCEEeEecccccHHHHHHHhCCCCCHHHHHHHHHHHHHHcCCCEEEe
Q psy15126 211 VSQGADFLMVKPA--LP--YLDIISEVKSRHPAYPLFVYQVSGEYAMLAFAAQAGALDLKRALMETLTCLRRGGADVIIS 286 (300)
Q Consensus 211 a~~GADivmVkPs--mm--~ld~Ir~~~d~~~~vpi~aY~vSgeY~~~r~Aa~~~~~n~~eal~E~~~~~~r~GAD~Ii~ 286 (300)
+++|+|+|.+--+ .+ .++.|+++++.+|++||++-.+ .+.+ ....+.++|||.|.+
T Consensus 264 ~~aG~d~v~i~~~~G~~~~~~~~i~~i~~~~~~~pvi~~~v---------------~t~~-----~a~~l~~aGad~I~v 323 (514)
T 1jcn_A 264 TQAGVDVIVLDSSQGNSVYQIAMVHYIKQKYPHLQVIGGNV---------------VTAA-----QAKNLIDAGVDGLRV 323 (514)
T ss_dssp HHTTCSEEEECCSCCCSHHHHHHHHHHHHHCTTCEEEEEEE---------------CSHH-----HHHHHHHHTCSEEEE
T ss_pred HHcCCCEEEeeccCCcchhHHHHHHHHHHhCCCCceEeccc---------------chHH-----HHHHHHHcCCCEEEE
Confidence 6799999977333 22 4789999999888999997544 2322 233444789999977
No 174
>1o66_A 3-methyl-2-oxobutanoate hydroxymethyltransferase; structural genomics; HET: MSE; 1.75A {Neisseria meningitidis serogroup B} SCOP: c.1.12.8 PDB: 1o68_A*
Probab=70.01 E-value=15 Score=33.96 Aligned_cols=73 Identities=15% Similarity=0.193 Sum_probs=42.4
Q ss_pred hhcCCceeeccCcchHHHHHHHHHhhCCCCCEEeEec----c-cccHHHHHHHhCCCCCHHHHHHHHHHHHHHcCCCEEE
Q psy15126 211 VSQGADFLMVKPALPYLDIISEVKSRHPAYPLFVYQV----S-GEYAMLAFAAQAGALDLKRALMETLTCLRRGGADVII 285 (300)
Q Consensus 211 a~~GADivmVkPsmm~ld~Ir~~~d~~~~vpi~aY~v----S-geY~~~r~Aa~~~~~n~~eal~E~~~~~~r~GAD~Ii 285 (300)
+++||+.|-+.=+.-..+.||.+.++ .+|+|..-= | ...+-||--. .. +..+.++|-.+.+.++|||+|.
T Consensus 105 ~kaGa~aVklEdg~e~~~~I~al~~a--gIpV~gHiGLtPQs~~~~ggf~v~g-rt--~~a~~~i~rA~a~~eAGA~~iv 179 (275)
T 1o66_A 105 MAAGAHMVKLEGGVWMAETTEFLQMR--GIPVCAHIGLTPQSVFAFGGYKVQG-RG--GKAQALLNDAKAHDDAGAAVVL 179 (275)
T ss_dssp HHTTCSEEEEECSGGGHHHHHHHHHT--TCCEEEEEESCGGGTTC--------------CHHHHHHHHHHHHHTTCSEEE
T ss_pred HHcCCcEEEECCcHHHHHHHHHHHHc--CCCeEeeeccCceeecccCCeEEEe-Ch--HHHHHHHHHHHHHHHcCCcEEE
Confidence 67999999555555578999999886 689996521 1 1122222111 11 1124455555666689999998
Q ss_pred ecc
Q psy15126 286 SYY 288 (300)
Q Consensus 286 ~y~ 288 (300)
.--
T Consensus 180 lE~ 182 (275)
T 1o66_A 180 MEC 182 (275)
T ss_dssp EES
T ss_pred Eec
Confidence 743
No 175
>1ujp_A Tryptophan synthase alpha chain; riken structural genomics/P initiative, RSGI, structural genomics, lyase; HET: CIT; 1.34A {Thermus thermophilus} SCOP: c.1.2.4 PDB: 1wxj_A*
Probab=69.70 E-value=15 Score=33.20 Aligned_cols=18 Identities=33% Similarity=0.689 Sum_probs=14.6
Q ss_pred HHHHHHHHHhhCCCCCEEe
Q psy15126 226 YLDIISEVKSRHPAYPLFV 244 (300)
Q Consensus 226 ~ld~Ir~~~d~~~~vpi~a 244 (300)
.++.|+++++. +++||..
T Consensus 79 ~~~~v~~ir~~-~~~Pii~ 96 (271)
T 1ujp_A 79 ALELVREVRAL-TEKPLFL 96 (271)
T ss_dssp HHHHHHHHHHH-CCSCEEE
T ss_pred HHHHHHHHHhc-CCCCEEE
Confidence 36779999988 6899888
No 176
>3ist_A Glutamate racemase; structural genomics, cell WALL biogenesis/degradation, isomerase, peptidoglycan synthesis; HET: MSE; 1.65A {Listeria monocytogenes} PDB: 3hfr_A* 3isv_A*
Probab=69.65 E-value=41 Score=30.23 Aligned_cols=28 Identities=25% Similarity=0.402 Sum_probs=20.8
Q ss_pred hCCCCC---HHHHHHHHHHHHHHcCCCEEEe
Q psy15126 259 QAGALD---LKRALMETLTCLRRGGADVIIS 286 (300)
Q Consensus 259 ~~~~~n---~~eal~E~~~~~~r~GAD~Ii~ 286 (300)
+.|+.+ .++.+.+.+..+++.|+|.|+.
T Consensus 154 E~g~~~~~~~~~~l~~~l~~l~~~g~D~iVL 184 (269)
T 3ist_A 154 ESGEYKSAIAKKVVAESLLPLKSTKIDTVIL 184 (269)
T ss_dssp HTTCTTSHHHHHHHHHHHGGGGGSCCCEEEE
T ss_pred HcCCCCCHHHHHHHHHHHHHHHhCCCCEEEE
Confidence 457765 3667778888887789998885
No 177
>1jbe_A Chemotaxis protein CHEY; signaling protein; 1.08A {Escherichia coli} SCOP: c.23.1.1 PDB: 3chy_A 1a0o_A 1cey_A 1bdj_A 1eay_A 1f4v_A 1ffg_A 1ffs_A 1ffw_A 1fqw_A 2b1j_A 1chn_A 1djm_A 1kmi_Y* 1d4z_A 3olx_A 3olw_A 1cye_A 2che_A 2chf_A ...
Probab=69.39 E-value=29 Score=24.96 Aligned_cols=57 Identities=12% Similarity=0.255 Sum_probs=37.0
Q ss_pred cCCceeeccCcc---hHHHHHHHHHh--hCCCCCEEeEecccccHHHHHHHhCCCCCHHHHHHHHHHHHHHcCCCEEEec
Q psy15126 213 QGADFLMVKPAL---PYLDIISEVKS--RHPAYPLFVYQVSGEYAMLAFAAQAGALDLKRALMETLTCLRRGGADVIISY 287 (300)
Q Consensus 213 ~GADivmVkPsm---m~ld~Ir~~~d--~~~~vpi~aY~vSgeY~~~r~Aa~~~~~n~~eal~E~~~~~~r~GAD~Ii~y 287 (300)
...|+|++--.| .-++.++++++ .++++||+..+....... ....+ +.||+-.+.|
T Consensus 48 ~~~dlvi~D~~l~~~~g~~l~~~l~~~~~~~~~~ii~~s~~~~~~~------------------~~~~~-~~ga~~~l~K 108 (128)
T 1jbe_A 48 GGYGFVISDWNMPNMDGLELLKTIRAXXAMSALPVLMVTAEAKKEN------------------IIAAA-QAGASGYVVK 108 (128)
T ss_dssp CCCCEEEEESCCSSSCHHHHHHHHHC--CCTTCCEEEEESSCCHHH------------------HHHHH-HTTCSEEEES
T ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHhhcccCCCcEEEEecCccHHH------------------HHHHH-HhCcCceeec
Confidence 346888876544 36788888886 367899998865322211 12233 6788888888
Q ss_pred c
Q psy15126 288 Y 288 (300)
Q Consensus 288 ~ 288 (300)
|
T Consensus 109 P 109 (128)
T 1jbe_A 109 P 109 (128)
T ss_dssp S
T ss_pred C
Confidence 7
No 178
>2qjg_A Putative aldolase MJ0400; beta-alpha barrel, lyase; HET: F2P; 2.60A {Methanocaldococcus jannaschii} PDB: 2qjh_A 2qji_A
Probab=69.02 E-value=22 Score=30.81 Aligned_cols=34 Identities=21% Similarity=0.232 Sum_probs=26.4
Q ss_pred hhcCCceeeccCcchHHHHHHHHHhhCCCCCEEeEe
Q psy15126 211 VSQGADFLMVKPALPYLDIISEVKSRHPAYPLFVYQ 246 (300)
Q Consensus 211 a~~GADivmVkPsmm~ld~Ir~~~d~~~~vpi~aY~ 246 (300)
.+.|||+|-+.|. .-++.++++++.. ++|+.+..
T Consensus 176 ~~~Gad~i~~~~~-~~~~~l~~i~~~~-~ipvva~G 209 (273)
T 2qjg_A 176 AELGADIVKTSYT-GDIDSFRDVVKGC-PAPVVVAG 209 (273)
T ss_dssp HHTTCSEEEECCC-SSHHHHHHHHHHC-SSCEEEEC
T ss_pred HHcCCCEEEECCC-CCHHHHHHHHHhC-CCCEEEEe
Confidence 5789999988874 3467788888775 69999874
No 179
>2hqr_A Putative transcriptional regulator; phosporylation-independent response regulator, H. pylori, SY dimer, signaling protein; NMR {Helicobacter pylori}
Probab=69.02 E-value=21 Score=28.88 Aligned_cols=36 Identities=17% Similarity=0.221 Sum_probs=27.7
Q ss_pred hcCCceeeccCcchHHHHHHHHHhhCC-CCCEEeEeccc
Q psy15126 212 SQGADFLMVKPALPYLDIISEVKSRHP-AYPLFVYQVSG 249 (300)
Q Consensus 212 ~~GADivmVkPsmm~ld~Ir~~~d~~~-~vpi~aY~vSg 249 (300)
+...|+|+ -|.+.-++.++++++. + ++||+..+...
T Consensus 42 ~~~~dlvi-lp~~~g~~~~~~lr~~-~~~~~ii~lt~~~ 78 (223)
T 2hqr_A 42 IRNYDLVM-VSDKNALSFVSRIKEK-HSSIVVLVSSDNP 78 (223)
T ss_dssp TSCCSEEE-ECCTTHHHHHHHHHHH-CTTSEEEEEESSC
T ss_pred cCCCCEEE-eCCCCHHHHHHHHHhC-CCCCcEEEEECCC
Confidence 34579987 6766678889998887 6 89999996633
No 180
>3ist_A Glutamate racemase; structural genomics, cell WALL biogenesis/degradation, isomerase, peptidoglycan synthesis; HET: MSE; 1.65A {Listeria monocytogenes} PDB: 3hfr_A* 3isv_A*
Probab=68.75 E-value=66 Score=28.88 Aligned_cols=163 Identities=17% Similarity=0.234 Sum_probs=93.5
Q ss_pred HHHHHHHhCCC--cEEEeeecCCCCCCCCcceeeCCCCceecHHhHHHHHHHHHHHHHcCCCccccC-------------
Q psy15126 21 VIPMIRKQFPS--LTIACDVCLCGYTSHGHCAIFNEDGSIHYEKTLKRLADISKAFSDAGAHIVAPS------------- 85 (300)
Q Consensus 21 ~i~~ik~~~p~--l~i~~Dvclc~yt~hGHcgi~~~~g~i~nd~Tl~~l~~~A~~~A~aGad~vAPS------------- 85 (300)
..+.|++..|+ ++-++|..-.||.. -..+.=.+.+.+.+..+.+.|+++|...
T Consensus 20 v~~~i~~~lP~~~~iy~~D~a~~PYG~------------ks~~~i~~~~~~~~~~L~~~g~~~IVIACNTa~~~al~~lr 87 (269)
T 3ist_A 20 VVREVLKQLPHEQVYYLGDTARCPYGP------------RDKEEVAKFTWEMTNFLVDRGIKMLVIACNTATAAALYDIR 87 (269)
T ss_dssp HHHHHHHHCTTCCEEEEECGGGCCCTT------------SCHHHHHHHHHHHHHHHHHTTCSEEEECCHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCCcEEEEeCCCCCCCCC------------CCHHHHHHHHHHHHHHHHHCCCCEEEEeCCCccHHHHHHHH
Confidence 67889999996 77789999999932 2334444555666777778899888651
Q ss_pred ----CCCcchHH-HHHHHHhhCCCCCCcccccchhhhhcccch-hhhhhhcCCCCCCCcceeeCCCCCCceEEEEeeccc
Q psy15126 86 ----DMMDNRIH-AIKQSLFTSRQSSTTGLLSYSAKFCSAFYG-PFREAAGSAPTFGDRSCYQLPCGSKGLAIRAAVCLC 159 (300)
Q Consensus 86 ----dmMDgrv~-air~aLd~~g~~~~v~ImsysaK~aS~~YG-PfRda~gS~~~~gdr~~yQ~~~~~~~~ai~~dvclc 159 (300)
...=|-+. +++.++...+. .+++||+=.+--.|.+|- -+++. + ++.-+...-|.
T Consensus 88 ~~~~iPvigii~pa~~~A~~~~~~-~~IGVLaT~~Ti~s~~y~~~i~~~-~-----------------~~~~v~~~~~~- 147 (269)
T 3ist_A 88 EKLDIPVIGVIQPGSRAALKATRN-NKIGVLGTLGTVESMAYPTALKGL-N-----------------RRVEVDSLACP- 147 (269)
T ss_dssp HHCSSCEEESHHHHHHHHHHHCSS-SEEEEEECHHHHHHTHHHHHHHHH-C-----------------TTCEEEEEECH-
T ss_pred HhcCCCEEeecHHHHHHHHHHcCC-CeEEEEeccchhhHHHHHHHHHHh-C-----------------CCCEEeccCCH-
Confidence 11123233 44555555555 577888766666666764 22221 1 11111111111
Q ss_pred CCCCCCccccc--cCCCcccchHhHHHHHHHHHhhhcccccCCCCCccccchhhhcCCceeeccCc-ch-HHHHHHHHHh
Q psy15126 160 GYTSHGHCAIF--NEDGSIHYEKTLKRLADISKAFSDAVYVPNHNTDRFQARDVSQGADFLMVKPA-LP-YLDIISEVKS 235 (300)
Q Consensus 160 ~yt~hGHcgi~--~~~g~i~nd~tl~~l~~~a~~~a~~~~~~~~n~~~~~~~Da~~GADivmVkPs-mm-~ld~Ir~~~d 235 (300)
+++ =|.|.++.+.+.+.+.+..-.+ .+.|+|.|+..=- ++ ..+.|++...
T Consensus 148 --------~lV~~vE~g~~~~~~~~~~l~~~l~~l------------------~~~g~D~iVLGCTh~pll~~~i~~~~~ 201 (269)
T 3ist_A 148 --------KFVSVVESGEYKSAIAKKVVAESLLPL------------------KSTKIDTVILGCTHYPLLKPIIENFMG 201 (269)
T ss_dssp --------HHHHHHHTTCTTSHHHHHHHHHHHGGG------------------GGSCCCEEEECSTTGGGGHHHHHHHHC
T ss_pred --------HHHHHHHcCCCCCHHHHHHHHHHHHHH------------------HhCCCCEEEECCCCHHHHHHHHHHHcC
Confidence 111 1456666666666666554443 4679998876655 55 4555665543
Q ss_pred hCCCCCEE
Q psy15126 236 RHPAYPLF 243 (300)
Q Consensus 236 ~~~~vpi~ 243 (300)
+++|+.
T Consensus 202 --~~v~vI 207 (269)
T 3ist_A 202 --DGVAVI 207 (269)
T ss_dssp --TTSEEE
T ss_pred --CCCeEE
Confidence 246653
No 181
>3cfy_A Putative LUXO repressor protein; structural genomics, unknown function, uncharacterized protein, signal receiver domain; 2.50A {Vibrio parahaemolyticus rimd 2210633}
Probab=68.54 E-value=32 Score=25.59 Aligned_cols=35 Identities=3% Similarity=0.147 Sum_probs=26.6
Q ss_pred cCCceeeccCc---chHHHHHHHHHhhCCCCCEEeEec
Q psy15126 213 QGADFLMVKPA---LPYLDIISEVKSRHPAYPLFVYQV 247 (300)
Q Consensus 213 ~GADivmVkPs---mm~ld~Ir~~~d~~~~vpi~aY~v 247 (300)
...|+|++--. +.-++.++++++.++.+||+..+.
T Consensus 47 ~~~dlvllD~~l~~~~g~~l~~~l~~~~~~~~ii~ls~ 84 (137)
T 3cfy_A 47 SKPQLIILDLKLPDMSGEDVLDWINQNDIPTSVIIATA 84 (137)
T ss_dssp HCCSEEEECSBCSSSBHHHHHHHHHHTTCCCEEEEEES
T ss_pred cCCCEEEEecCCCCCCHHHHHHHHHhcCCCCCEEEEEe
Confidence 45688887644 346888898888778899998865
No 182
>3kdn_A Rubisco, ribulose bisphosphate carboxylase; ribulose-1,5-bisphosphate carboxylase/oxygenase, Ca dioxide fixation, lyase, magnesium; HET: KCX CAP; 2.09A {Thermococcus kodakaraensis} PDB: 3a13_A* 3kdo_A* 3a12_A* 1geh_A*
Probab=68.37 E-value=6.5 Score=38.74 Aligned_cols=141 Identities=11% Similarity=0.105 Sum_probs=82.7
Q ss_pred HHhHHHHHHHHHHHHHcCCCccc--------cCCCCcchHHHHHHHHhhCCCCCCcccccchhhhhcccchhhhhhhcCC
Q psy15126 61 EKTLKRLADISKAFSDAGAHIVA--------PSDMMDNRIHAIKQSLFTSRQSSTTGLLSYSAKFCSAFYGPFREAAGSA 132 (300)
Q Consensus 61 d~Tl~~l~~~A~~~A~aGad~vA--------PSdmMDgrv~air~aLd~~g~~~~v~ImsysaK~aS~~YGPfRda~gS~ 132 (300)
-.|.+.+++++.+++..|.|+|= |-.-+.-|+....++++++.- ..
T Consensus 167 GLs~~~~a~~~ye~~~GGlDfiKDDE~l~~qpf~p~~eRv~~v~eai~rA~~-eT------------------------- 220 (444)
T 3kdn_A 167 GYSPEEFEKLAYDLLSNGADYMKDDENLTSPWYNRFEERAEIMAKIIDKVEN-ET------------------------- 220 (444)
T ss_dssp CCCHHHHHHHHHHHHHTTCCEEECCTTCCSCTTSCHHHHHHHHHHHHHHHHH-HH-------------------------
T ss_pred CCCHHHHHHHHHHHHhcCCceeecCcCCCCCCCCCHHHHHHHHHHHHHHHHH-hh-------------------------
Confidence 36889999999999999999872 233455666666666665433 11
Q ss_pred CCCCCcceeeCCCCCCceEEEEeecccCCCCCCccccccCCCcccchHhHHHHHHHHHhhhcccccCCCCCccccchhhh
Q psy15126 133 PTFGDRSCYQLPCGSKGLAIRAAVCLCGYTSHGHCAIFNEDGSIHYEKTLKRLADISKAFSDAVYVPNHNTDRFQARDVS 212 (300)
Q Consensus 133 ~~~gdr~~yQ~~~~~~~~ai~~dvclc~yt~hGHcgi~~~~g~i~nd~tl~~l~~~a~~~a~~~~~~~~n~~~~~~~Da~ 212 (300)
|.++.|.++-. + +.++.++| |.-- .+
T Consensus 221 ---Ge~k~y~~NiT---------------------------a--~~~eM~~R----a~~a------------------~e 246 (444)
T 3kdn_A 221 ---GEKKTWFANIT---------------------------A--DLLEMEQR----LEVL------------------AD 246 (444)
T ss_dssp ---CCCCEEEEECC---------------------------S--SHHHHHHH----HHHH------------------HH
T ss_pred ---CCcceEEeecC---------------------------C--CHHHHHHH----HHHH------------------HH
Confidence 55666665532 1 02333333 2221 57
Q ss_pred cCCceeeccCcchHHHHHHHHHhhC--CCCCEEeEecccccHHHHHHHhCCCCCHHHHHHHHHHHHHHcCCCEEEecc
Q psy15126 213 QGADFLMVKPALPYLDIISEVKSRH--PAYPLFVYQVSGEYAMLAFAAQAGALDLKRALMETLTCLRRGGADVIISYY 288 (300)
Q Consensus 213 ~GADivmVkPsmm~ld~Ir~~~d~~--~~vpi~aY~vSgeY~~~r~Aa~~~~~n~~eal~E~~~~~~r~GAD~Ii~y~ 288 (300)
+|++++||-+-..=..+++.+.+.+ .++||.++-+ ..|.+-.-.+.|. +.+ ++-.+..+ +|+|.|.+-.
T Consensus 247 ~G~~~~mvd~~~~G~~a~~~l~~~~~~~~l~lh~HrA--~~ga~~r~~~hGi-~~~--vl~Kl~RL--aG~D~ih~gt 317 (444)
T 3kdn_A 247 LGLKHAMVDVVITGWGALRYIRDLAADYGLAIHGHRA--MHAAFTRNPYHGI-SMF--VLAKLYRL--IGIDQLHVGT 317 (444)
T ss_dssp HTCCEEEEEHHHHCHHHHHHHHHHHHHHTCEEEEECT--TTHHHHSCTTSEE-CHH--HHHHHHHH--HTCSEEECCC
T ss_pred cCCCEEEEccccccHHHHHHHHHhccccCeEEEEccC--cccccccCCCCCc-CHH--HHHHHHHH--cCCCeeeccc
Confidence 8999999987432234444444422 2699999955 4444322223344 332 23334444 7999998744
No 183
>3heb_A Response regulator receiver domain protein (CHEY); NYSGXRC, PSI-II, respose regulator, structure initiative, structural genomics; 2.40A {Rhodospirillum rubrum} SCOP: c.23.1.0
Probab=67.74 E-value=31 Score=25.88 Aligned_cols=58 Identities=26% Similarity=0.435 Sum_probs=39.4
Q ss_pred hcCCceeeccCcch---HHHHHHHHHh--hCCCCCEEeEecccccHHHHHHHhCCCCCHHHHHHHHHHHHHHcCCCEEEe
Q psy15126 212 SQGADFLMVKPALP---YLDIISEVKS--RHPAYPLFVYQVSGEYAMLAFAAQAGALDLKRALMETLTCLRRGGADVIIS 286 (300)
Q Consensus 212 ~~GADivmVkPsmm---~ld~Ir~~~d--~~~~vpi~aY~vSgeY~~~r~Aa~~~~~n~~eal~E~~~~~~r~GAD~Ii~ 286 (300)
+...|+|++--.|+ -++.++++++ .++++||+..+.+. +. +.+ ...+ +.||+-.+.
T Consensus 57 ~~~~dliilD~~l~~~~g~~~~~~lr~~~~~~~~pii~~t~~~--------------~~-~~~---~~~~-~~g~~~~l~ 117 (152)
T 3heb_A 57 AGRAQLVLLDLNLPDMTGIDILKLVKENPHTRRSPVVILTTTD--------------DQ-REI---QRCY-DLGANVYIT 117 (152)
T ss_dssp TTCBEEEEECSBCSSSBHHHHHHHHHHSTTTTTSCEEEEESCC--------------CH-HHH---HHHH-HTTCSEEEE
T ss_pred cCCCCEEEEeCCCCCCcHHHHHHHHHhcccccCCCEEEEecCC--------------CH-HHH---HHHH-HCCCcEEEe
Confidence 34568888875543 6889999988 57899999986422 11 111 1233 688888888
Q ss_pred cc
Q psy15126 287 YY 288 (300)
Q Consensus 287 y~ 288 (300)
||
T Consensus 118 KP 119 (152)
T 3heb_A 118 KP 119 (152)
T ss_dssp CC
T ss_pred CC
Confidence 87
No 184
>2qsj_A DNA-binding response regulator, LUXR family; structural genomics, PSI-2, protein structure initiative; 2.10A {Silicibacter pomeroyi dss-3}
Probab=67.66 E-value=20 Score=26.86 Aligned_cols=47 Identities=15% Similarity=0.279 Sum_probs=28.7
Q ss_pred cCCceeeccCcch---HHHHHHHHHhhCCCCCEEeEecccccHHHHHHHh
Q psy15126 213 QGADFLMVKPALP---YLDIISEVKSRHPAYPLFVYQVSGEYAMLAFAAQ 259 (300)
Q Consensus 213 ~GADivmVkPsmm---~ld~Ir~~~d~~~~vpi~aY~vSgeY~~~r~Aa~ 259 (300)
...|+|++--.++ -++.++++++.++++||+..+....-.....+.+
T Consensus 49 ~~~dlvi~d~~l~~~~g~~~~~~l~~~~~~~~ii~ls~~~~~~~~~~~~~ 98 (154)
T 2qsj_A 49 NTVDLILLDVNLPDAEAIDGLVRLKRFDPSNAVALISGETDHELIRAALE 98 (154)
T ss_dssp CCCSEEEECC------CHHHHHHHHHHCTTSEEEEC-----CHHHHHHHH
T ss_pred CCCCEEEEeCCCCCCchHHHHHHHHHhCCCCeEEEEeCCCCHHHHHHHHH
Confidence 4579998876543 5788999988888999999865433333333433
No 185
>2zay_A Response regulator receiver protein; structural genomics, NYSGXRC, target 11006U, protein structure initiative; 2.00A {Desulfuromonas acetoxidans}
Probab=67.65 E-value=25 Score=26.08 Aligned_cols=58 Identities=10% Similarity=0.159 Sum_probs=39.0
Q ss_pred hcCCceeeccCc---chHHHHHHHHHh--hCCCCCEEeEecccccHHHHHHHhCCCCCHHHHHHHHHHHHHHcCCCEEEe
Q psy15126 212 SQGADFLMVKPA---LPYLDIISEVKS--RHPAYPLFVYQVSGEYAMLAFAAQAGALDLKRALMETLTCLRRGGADVIIS 286 (300)
Q Consensus 212 ~~GADivmVkPs---mm~ld~Ir~~~d--~~~~vpi~aY~vSgeY~~~r~Aa~~~~~n~~eal~E~~~~~~r~GAD~Ii~ 286 (300)
+...|+|++--. +.-++.++++++ .++++||+..+...... . ....+ +.||+-++.
T Consensus 50 ~~~~dlii~d~~l~~~~g~~~~~~l~~~~~~~~~pii~ls~~~~~~---------------~---~~~~~-~~g~~~~l~ 110 (147)
T 2zay_A 50 KTHPHLIITEANMPKISGMDLFNSLKKNPQTASIPVIALSGRATAK---------------E---EAQLL-DMGFIDFIA 110 (147)
T ss_dssp HHCCSEEEEESCCSSSCHHHHHHHHHTSTTTTTSCEEEEESSCCHH---------------H---HHHHH-HHTCSEEEE
T ss_pred cCCCCEEEEcCCCCCCCHHHHHHHHHcCcccCCCCEEEEeCCCCHH---------------H---HHHHH-hCCCCEEEe
Confidence 345799988754 346889999987 57899999996532211 1 11223 578888888
Q ss_pred cc
Q psy15126 287 YY 288 (300)
Q Consensus 287 y~ 288 (300)
||
T Consensus 111 kp 112 (147)
T 2zay_A 111 KP 112 (147)
T ss_dssp SS
T ss_pred CC
Confidence 87
No 186
>2qvg_A Two component response regulator; NYSGXRC, PSI-2, structural genomics, protein structure initiative; 1.50A {Legionella pneumophila subsp}
Probab=67.63 E-value=18 Score=26.57 Aligned_cols=58 Identities=5% Similarity=0.061 Sum_probs=38.8
Q ss_pred cCCceeeccCcc---hHHHHHHHHHhhC--CCCCEEeEecccccHHHHHHHhCCCCCHHHHHHHHHHHHHHcCCCEEEec
Q psy15126 213 QGADFLMVKPAL---PYLDIISEVKSRH--PAYPLFVYQVSGEYAMLAFAAQAGALDLKRALMETLTCLRRGGADVIISY 287 (300)
Q Consensus 213 ~GADivmVkPsm---m~ld~Ir~~~d~~--~~vpi~aY~vSgeY~~~r~Aa~~~~~n~~eal~E~~~~~~r~GAD~Ii~y 287 (300)
...|+|++--.+ .-++.+++++... +++||+..+.+..- +......+.||+-.+.|
T Consensus 58 ~~~dlii~D~~l~~~~g~~~~~~l~~~~~~~~~~ii~ls~~~~~-------------------~~~~~~~~~g~~~~l~k 118 (143)
T 2qvg_A 58 IHPKLILLDINIPKMNGIEFLKELRDDSSFTDIEVFVLTAAYTS-------------------KDKLAFESLNIRGHLIK 118 (143)
T ss_dssp CCCSEEEEETTCTTSCHHHHHHHHTTSGGGTTCEEEEEESCCCH-------------------HHHHHHTTTTCCEEEES
T ss_pred CCCCEEEEecCCCCCCHHHHHHHHHcCccccCCcEEEEeCCCCH-------------------HHHHHHHhcCCCeEEEC
Confidence 457999887544 3688899988764 78999998652221 11122236888888888
Q ss_pred ch
Q psy15126 288 YT 289 (300)
Q Consensus 288 ~A 289 (300)
|-
T Consensus 119 P~ 120 (143)
T 2qvg_A 119 PL 120 (143)
T ss_dssp SC
T ss_pred CC
Confidence 73
No 187
>3grc_A Sensor protein, kinase; protein structure initiative II(PSI II), NYSGXRC, 11025B, structural genomics; 2.21A {Polaromonas SP}
Probab=67.56 E-value=15 Score=27.10 Aligned_cols=37 Identities=16% Similarity=0.257 Sum_probs=28.3
Q ss_pred hhcCCceeeccCcch---HHHHHHHHHh--hCCCCCEEeEec
Q psy15126 211 VSQGADFLMVKPALP---YLDIISEVKS--RHPAYPLFVYQV 247 (300)
Q Consensus 211 a~~GADivmVkPsmm---~ld~Ir~~~d--~~~~vpi~aY~v 247 (300)
.+...|+|++--.|+ -++.++++++ .++++||+..+.
T Consensus 47 ~~~~~dlvi~d~~l~~~~g~~~~~~l~~~~~~~~~~ii~~s~ 88 (140)
T 3grc_A 47 ARRPYAAMTVDLNLPDQDGVSLIRALRRDSRTRDLAIVVVSA 88 (140)
T ss_dssp HHSCCSEEEECSCCSSSCHHHHHHHHHTSGGGTTCEEEEECT
T ss_pred HhCCCCEEEEeCCCCCCCHHHHHHHHHhCcccCCCCEEEEec
Confidence 345679998876544 6888998887 578999999854
No 188
>1tx2_A DHPS, dihydropteroate synthase; folate biosynthesis, pterine, MA transferase; HET: 680; 1.83A {Bacillus anthracis} SCOP: c.1.21.1 PDB: 1tww_A* 1twz_A* 1tx0_A* 1tws_A* 3h21_A* 3h22_A* 3h23_A* 3h24_A* 3h26_A* 3h2a_A* 3h2c_A* 3h2e_A* 3h2f_A* 3h2m_A* 3h2n_A* 3h2o_A* 3tya_A* 3tyb_A* 3tyc_A* 3tyd_A* ...
Probab=67.51 E-value=32 Score=31.82 Aligned_cols=71 Identities=15% Similarity=0.236 Sum_probs=43.4
Q ss_pred hhcCCceeecc-----Cc---------ch-HHHHHHHHHhhCCCCCEEeEecccccHHHHHHHhCC--C------CCHHH
Q psy15126 211 VSQGADFLMVK-----PA---------LP-YLDIISEVKSRHPAYPLFVYQVSGEYAMLAFAAQAG--A------LDLKR 267 (300)
Q Consensus 211 a~~GADivmVk-----Ps---------mm-~ld~Ir~~~d~~~~vpi~aY~vSgeY~~~r~Aa~~~--~------~n~~e 267 (300)
+++|||||=|. |. +- .+.+|+.+++.+ ++||..= |-.-.-.++|.+.| . .+..+
T Consensus 73 v~~GAdiIDIGgeStrPga~~v~~~eE~~RvvpvI~~l~~~~-~vpiSID--T~~~~V~~aAl~aGa~iINdvsg~~~d~ 149 (297)
T 1tx2_A 73 RDEGAHIIDIGGESTRPGFAKVSVEEEIKRVVPMIQAVSKEV-KLPISID--TYKAEVAKQAIEAGAHIINDIWGAKAEP 149 (297)
T ss_dssp HHTTCSEEEEESCC----CCCCCHHHHHHHHHHHHHHHHHHS-CSCEEEE--CSCHHHHHHHHHHTCCEEEETTTTSSCT
T ss_pred HHcCCCEEEECCCcCCCCCCCCCHHHHHHHHHHHHHHHHhcC-CceEEEe--CCCHHHHHHHHHcCCCEEEECCCCCCCH
Confidence 89999999877 33 11 467777777766 7898765 44555666666543 1 11233
Q ss_pred HHHHHHHHHHHcCCCEEEec
Q psy15126 268 ALMETLTCLRRGGADVIISY 287 (300)
Q Consensus 268 al~E~~~~~~r~GAD~Ii~y 287 (300)
.+.+... +.|+-+|+..
T Consensus 150 ~m~~~aa---~~g~~vVlmh 166 (297)
T 1tx2_A 150 KIAEVAA---HYDVPIILMH 166 (297)
T ss_dssp HHHHHHH---HHTCCEEEEC
T ss_pred HHHHHHH---HhCCcEEEEe
Confidence 4445443 4578877765
No 189
>3m6m_D Sensory/regulatory protein RPFC; RPFF, REC, enoyl-COA hydratase, lyase-transferase COMP; 2.50A {Xanthomonas campestris PV}
Probab=67.43 E-value=31 Score=25.93 Aligned_cols=37 Identities=19% Similarity=0.353 Sum_probs=24.7
Q ss_pred hhcCCceeeccCcch---HHHHHHHHHh----hCCCCCEEeEec
Q psy15126 211 VSQGADFLMVKPALP---YLDIISEVKS----RHPAYPLFVYQV 247 (300)
Q Consensus 211 a~~GADivmVkPsmm---~ld~Ir~~~d----~~~~vpi~aY~v 247 (300)
.+...|+|++--.|+ -++.++++++ .++.+||+..+.
T Consensus 55 ~~~~~dlvl~D~~mp~~~g~~~~~~lr~~~~~~~~~~pii~~s~ 98 (143)
T 3m6m_D 55 AEEDYDAVIVDLHMPGMNGLDMLKQLRVMQASGMRYTPVVVLSA 98 (143)
T ss_dssp HHSCCSEEEEESCCSSSCHHHHHHHHHHHHHTTCCCCCEEEEES
T ss_pred hcCCCCEEEEeCCCCCCCHHHHHHHHHhchhccCCCCeEEEEeC
Confidence 345679998875443 5666666653 256799999854
No 190
>3q9s_A DNA-binding response regulator; DNA binding protein; 2.40A {Deinococcus radiodurans}
Probab=67.42 E-value=21 Score=30.11 Aligned_cols=36 Identities=19% Similarity=0.455 Sum_probs=27.8
Q ss_pred hhcCCceeeccCcch---HHHHHHHHHhhCCCCCEEeEec
Q psy15126 211 VSQGADFLMVKPALP---YLDIISEVKSRHPAYPLFVYQV 247 (300)
Q Consensus 211 a~~GADivmVkPsmm---~ld~Ir~~~d~~~~vpi~aY~v 247 (300)
.+...|+|++--.|+ -++.++++++ .+++||+..+.
T Consensus 78 ~~~~~DlvllD~~lp~~~G~~l~~~lr~-~~~~~iI~lt~ 116 (249)
T 3q9s_A 78 REDHPDLILLDLGLPDFDGGDVVQRLRK-NSALPIIVLTA 116 (249)
T ss_dssp HHSCCSEEEEECCSCHHHHHHHHHHHHT-TCCCCEEEEES
T ss_pred hcCCCCEEEEcCCCCCCCHHHHHHHHHc-CCCCCEEEEEC
Confidence 345679998876655 5788888887 67899999965
No 191
>3t8y_A CHEB, chemotaxis response regulator protein-glutamate methylesterase; CHEA, hydrolase; 1.90A {Thermotoga maritima}
Probab=67.36 E-value=14 Score=28.65 Aligned_cols=61 Identities=16% Similarity=0.248 Sum_probs=39.7
Q ss_pred hhcCCceeeccCcch---HHHHHHHHHhhCCCCCEEeEecccccHHHHHHHhCCCCCHHHHHHHHHHHHHHcCCCEEEec
Q psy15126 211 VSQGADFLMVKPALP---YLDIISEVKSRHPAYPLFVYQVSGEYAMLAFAAQAGALDLKRALMETLTCLRRGGADVIISY 287 (300)
Q Consensus 211 a~~GADivmVkPsmm---~ld~Ir~~~d~~~~vpi~aY~vSgeY~~~r~Aa~~~~~n~~eal~E~~~~~~r~GAD~Ii~y 287 (300)
.+...|+|++--.|+ -++.+++++...+ +||+.......-. .+. ....+ +.||+-.+.|
T Consensus 68 ~~~~~dlvilD~~l~~~~g~~l~~~lr~~~~-~~ii~~s~~~~~~-------------~~~---~~~~~-~~ga~~~l~K 129 (164)
T 3t8y_A 68 IELKPDVITMDIEMPNLNGIEALKLIMKKAP-TRVIMVSSLTEEG-------------AAI---TIEAL-RNGAVDFITK 129 (164)
T ss_dssp HHHCCSEEEECSSCSSSCHHHHHHHHHHHSC-CEEEEEESSCCTT-------------CHH---HHHHH-HTTCCEEEEC
T ss_pred ccCCCCEEEEeCCCCCCCHHHHHHHHHhcCC-ceEEEEecCCccc-------------hHH---HHHHH-HcCcCEEEeC
Confidence 345679998876544 6888999988876 8998885522211 001 11233 6888888888
Q ss_pred ch
Q psy15126 288 YT 289 (300)
Q Consensus 288 ~A 289 (300)
|-
T Consensus 130 P~ 131 (164)
T 3t8y_A 130 PH 131 (164)
T ss_dssp SS
T ss_pred CC
Confidence 83
No 192
>1m3u_A 3-methyl-2-oxobutanoate hydroxymethyltransferase; beta-alpha-barrel, TIM-barrel, ketopantoate, selenomethionin decamer; HET: KPL; 1.80A {Escherichia coli} SCOP: c.1.12.8
Probab=67.16 E-value=17 Score=33.43 Aligned_cols=74 Identities=16% Similarity=0.184 Sum_probs=43.3
Q ss_pred hhcCCceeeccCcchHHHHHHHHHhhCCCCCEEeEecccccHHHHHHH----hCCCCC-HHHHHHHHHHHHHHcCCCEEE
Q psy15126 211 VSQGADFLMVKPALPYLDIISEVKSRHPAYPLFVYQVSGEYAMLAFAA----QAGALD-LKRALMETLTCLRRGGADVII 285 (300)
Q Consensus 211 a~~GADivmVkPsmm~ld~Ir~~~d~~~~vpi~aY~vSgeY~~~r~Aa----~~~~~n-~~eal~E~~~~~~r~GAD~Ii 285 (300)
+++||+.|-+.=+.-..+.||.+.+. .+|+|.+ -|.=.-.-... -.|--+ ..+.++|-.+.+.++|||+|.
T Consensus 104 ~kaGa~aVklEgg~e~~~~I~al~~a--gipV~gH--iGLtPq~v~~~ggf~v~grt~~~a~~~i~rA~a~~eAGA~~iv 179 (264)
T 1m3u_A 104 MRAGANMVKIEGGEWLVETVQMLTER--AVPVCGH--LGLTPQSVNIFGGYKVQGRGDEAGDQLLSDALALEAAGAQLLV 179 (264)
T ss_dssp HHTTCSEEECCCSGGGHHHHHHHHHT--TCCEEEE--EESCGGGHHHHTSSCCCCCSHHHHHHHHHHHHHHHHHTCCEEE
T ss_pred HHcCCCEEEECCcHHHHHHHHHHHHC--CCCeEee--ecCCceeecccCCeEEEeCCHHHHHHHHHHHHHHHHCCCcEEE
Confidence 67999999444444589999999886 6999965 11111000000 011111 124455555666689999998
Q ss_pred ecc
Q psy15126 286 SYY 288 (300)
Q Consensus 286 ~y~ 288 (300)
.--
T Consensus 180 lE~ 182 (264)
T 1m3u_A 180 LEC 182 (264)
T ss_dssp EES
T ss_pred Eec
Confidence 743
No 193
>3nhm_A Response regulator; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.19A {Myxococcus xanthus}
Probab=66.18 E-value=30 Score=25.06 Aligned_cols=37 Identities=11% Similarity=0.178 Sum_probs=28.6
Q ss_pred hhcCCceeeccCcch---HHHHHHHHHhh--CCCCCEEeEec
Q psy15126 211 VSQGADFLMVKPALP---YLDIISEVKSR--HPAYPLFVYQV 247 (300)
Q Consensus 211 a~~GADivmVkPsmm---~ld~Ir~~~d~--~~~vpi~aY~v 247 (300)
.+...|+|++-..|+ -++.++++++. ++++||+..+.
T Consensus 44 ~~~~~dlvi~d~~l~~~~g~~~~~~l~~~~~~~~~pii~~s~ 85 (133)
T 3nhm_A 44 LAHPPDVLISDVNMDGMDGYALCGHFRSEPTLKHIPVIFVSG 85 (133)
T ss_dssp HHSCCSEEEECSSCSSSCHHHHHHHHHHSTTTTTCCEEEEES
T ss_pred hcCCCCEEEEeCCCCCCCHHHHHHHHHhCCccCCCCEEEEeC
Confidence 345679998886654 68889998886 67899999864
No 194
>3vav_A 3-methyl-2-oxobutanoate hydroxymethyltransferase; structural genomics, seattle structural genomics center for infectious disease; 1.80A {Burkholderia thailandensis} SCOP: c.1.12.8 PDB: 3ez4_A
Probab=65.71 E-value=13 Score=34.39 Aligned_cols=72 Identities=15% Similarity=0.188 Sum_probs=43.7
Q ss_pred hhcCCceeeccCcchHHHHHHHHHhhCCCCCEEeEec----c-cccHHHHHHHhCCCC-CHHHHHHHHHHHHHHcCCCEE
Q psy15126 211 VSQGADFLMVKPALPYLDIISEVKSRHPAYPLFVYQV----S-GEYAMLAFAAQAGAL-DLKRALMETLTCLRRGGADVI 284 (300)
Q Consensus 211 a~~GADivmVkPsmm~ld~Ir~~~d~~~~vpi~aY~v----S-geY~~~r~Aa~~~~~-n~~eal~E~~~~~~r~GAD~I 284 (300)
+++||+.|-+.=+....+.|+.+.++ .+|+|.+-- | ...+-|| + .|-- ...+.++|-.+.+.++|||+|
T Consensus 116 ~kaGa~aVklEdg~~~~~~i~~l~~~--GIpv~gHlgltPq~~~~~gg~~--v-qgrt~~~a~~~i~rA~a~~eAGA~~i 190 (275)
T 3vav_A 116 MRAGAQMVKFEGGEWLAETVRFLVER--AVPVCAHVGLTPQSVHAFGGFK--V-QGKTEAGAAQLLRDARAVEEAGAQLI 190 (275)
T ss_dssp HHTTCSEEEEECCGGGHHHHHHHHHT--TCCEEEEEESCGGGHHHHC-----C-CCCSHHHHHHHHHHHHHHHHHTCSEE
T ss_pred HHcCCCEEEECCchhHHHHHHHHHHC--CCCEEEecCCCceEEeccCCeE--E-EcCCHHHHHHHHHHHHHHHHcCCCEE
Confidence 67899999555555578888888875 799998621 0 0011111 0 1211 122455666666778999999
Q ss_pred Eec
Q psy15126 285 ISY 287 (300)
Q Consensus 285 i~y 287 (300)
..-
T Consensus 191 vlE 193 (275)
T 3vav_A 191 VLE 193 (275)
T ss_dssp EEE
T ss_pred Eec
Confidence 874
No 195
>1q6o_A Humps, 3-keto-L-gulonate 6-phosphate decarboxylase, D-; beta barrel, lyase; HET: LG6; 1.20A {Escherichia coli} SCOP: c.1.2.3 PDB: 1kw1_A* 1q6l_A* 1kv8_A* 1q6q_A* 1q6r_A* 1xbv_A* 1so5_A* 1so4_A* 1xby_A* 1so3_A* 1so6_A* 1xbz_A* 1xbx_A*
Probab=64.39 E-value=17 Score=30.84 Aligned_cols=62 Identities=15% Similarity=0.089 Sum_probs=43.4
Q ss_pred HHHHHHHHhCCCcEEEeeecCCCCCCCCcceeeCCCCceecHHhHHHHHHHHHHHHHcCCCccccCCCCcch-HHHHHHH
Q psy15126 20 QVIPMIRKQFPSLTIACDVCLCGYTSHGHCAIFNEDGSIHYEKTLKRLADISKAFSDAGAHIVAPSDMMDNR-IHAIKQS 98 (300)
Q Consensus 20 ~~i~~ik~~~p~l~i~~Dvclc~yt~hGHcgi~~~~g~i~nd~Tl~~l~~~A~~~A~aGad~vAPSdmMDgr-v~air~a 98 (300)
+.|+.||+.+|+..|+.|+-+. + +-.|+.. .++++|||+|.-...+... +...++.
T Consensus 45 ~~i~~l~~~~p~~~v~lD~kl~-------d----------ip~t~~~------~~~~~Gad~itvh~~~g~~~l~~~~~~ 101 (216)
T 1q6o_A 45 RAVRDLKALYPHKIVLADAKIA-------D----------AGKILSR------MCFEANADWVTVICCADINTAKGALDV 101 (216)
T ss_dssp HHHHHHHHHCTTSEEEEEEEEC-------S----------CHHHHHH------HHHHTTCSEEEEETTSCHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCeEEEEEEec-------c----------cHHHHHH------HHHhCCCCEEEEeccCCHHHHHHHHHH
Confidence 4688899999998899998762 1 1223322 6789999999886555443 6777777
Q ss_pred HhhCCC
Q psy15126 99 LFTSRQ 104 (300)
Q Consensus 99 Ld~~g~ 104 (300)
+.+.|.
T Consensus 102 ~~~~g~ 107 (216)
T 1q6o_A 102 AKEFNG 107 (216)
T ss_dssp HHHTTC
T ss_pred HHHcCC
Confidence 777666
No 196
>1yio_A Response regulatory protein; transcription regulation, DNA binding protein; 2.20A {Pseudomonas fluorescens} SCOP: a.4.6.2 c.23.1.1 PDB: 1zn2_A
Probab=63.89 E-value=27 Score=27.74 Aligned_cols=49 Identities=14% Similarity=0.293 Sum_probs=33.8
Q ss_pred hcCCceeeccCcch---HHHHHHHHHhhCCCCCEEeEecccccHHHHHHHhC
Q psy15126 212 SQGADFLMVKPALP---YLDIISEVKSRHPAYPLFVYQVSGEYAMLAFAAQA 260 (300)
Q Consensus 212 ~~GADivmVkPsmm---~ld~Ir~~~d~~~~vpi~aY~vSgeY~~~r~Aa~~ 260 (300)
+...|+|++--.|+ -++.++++++.++++||+..+..........|.+.
T Consensus 46 ~~~~dlvl~D~~lp~~~g~~~~~~l~~~~~~~~ii~ls~~~~~~~~~~a~~~ 97 (208)
T 1yio_A 46 PEQHGCLVLDMRMPGMSGIELQEQLTAISDGIPIVFITAHGDIPMTVRAMKA 97 (208)
T ss_dssp TTSCEEEEEESCCSSSCHHHHHHHHHHTTCCCCEEEEESCTTSCCCHHHHHT
T ss_pred ccCCCEEEEeCCCCCCCHHHHHHHHHhcCCCCCEEEEeCCCCHHHHHHHHHC
Confidence 34568887765543 68899999988889999999764444444444443
No 197
>1rpx_A Protein (ribulose-phosphate 3-epimerase); chloroplast, calvin cycle, oxidative pentose PH pathway; 2.30A {Solanum tuberosum} SCOP: c.1.2.2
Probab=63.76 E-value=17 Score=30.75 Aligned_cols=35 Identities=20% Similarity=0.145 Sum_probs=19.0
Q ss_pred HHHHHHHcCCCccccCCC--CcchHHHHHHHHhhCCC
Q psy15126 70 ISKAFSDAGAHIVAPSDM--MDNRIHAIKQSLFTSRQ 104 (300)
Q Consensus 70 ~A~~~A~aGad~vAPSdm--MDgrv~air~aLd~~g~ 104 (300)
.+..++++|+|.|..-+. -........+.+...|.
T Consensus 83 ~v~~~~~~Gad~v~vh~~~~~~~~~~~~~~~~~~~g~ 119 (230)
T 1rpx_A 83 RVPDFIKAGADIVSVHCEQSSTIHLHRTINQIKSLGA 119 (230)
T ss_dssp HHHHHHHTTCSEEEEECSTTTCSCHHHHHHHHHHTTS
T ss_pred HHHHHHHcCCCEEEEEecCccchhHHHHHHHHHHcCC
Confidence 445557799999974332 11223344445555565
No 198
>3cu2_A Ribulose-5-phosphate 3-epimerase; YP_718263.1, ribulose-PHOS epimerase family, structural genomics, joint center for STR genomics, JCSG; 1.91A {Haemophilus somnus}
Probab=63.54 E-value=21 Score=31.73 Aligned_cols=59 Identities=19% Similarity=0.229 Sum_probs=35.3
Q ss_pred hhcCCceeec---cCcch-------HHHHHHHHHhhC----CCCCEEeEecccccHHHHHHHhCCCCCHHHHHHHHHHHH
Q psy15126 211 VSQGADFLMV---KPALP-------YLDIISEVKSRH----PAYPLFVYQVSGEYAMLAFAAQAGALDLKRALMETLTCL 276 (300)
Q Consensus 211 a~~GADivmV---kPsmm-------~ld~Ir~~~d~~----~~vpi~aY~vSgeY~~~r~Aa~~~~~n~~eal~E~~~~~ 276 (300)
...++|+|.| .|.-. .++.||++++.. .++||.+= |-+|. |....+
T Consensus 145 ~l~~~D~vlvMsv~pgfggq~f~~~~l~ki~~lr~~~~~~~~~~~I~vd---------------GGI~~-----~~~~~~ 204 (237)
T 3cu2_A 145 YLDQIDVIQLLTLDPRNGTKYPSELILDRVIQVEKRLGNRRVEKLINID---------------GSMTL-----ELAKYF 204 (237)
T ss_dssp TTTTCSEEEEESEETTTTEECCHHHHHHHHHHHHHHHGGGGGGCEEEEE---------------SSCCH-----HHHHHH
T ss_pred HhhcCceeeeeeeccCcCCeecChhHHHHHHHHHHHHHhcCCCceEEEE---------------CCcCH-----HHHHHH
Confidence 4468998855 77411 356666665542 14665543 33564 344456
Q ss_pred HH--cCCCEEEecch
Q psy15126 277 RR--GGADVIISYYT 289 (300)
Q Consensus 277 ~r--~GAD~Ii~y~A 289 (300)
++ +|||++++--+
T Consensus 205 ~~~~aGad~~VvGSa 219 (237)
T 3cu2_A 205 KQGTHQIDWLVSGSA 219 (237)
T ss_dssp HHSSSCCCCEEECGG
T ss_pred HHhCCCCcEEEEeeH
Confidence 68 89999987544
No 199
>3nwr_A A rubisco-like protein; lyase; HET: KCX; 1.50A {Burkholderia fungorum}
Probab=63.36 E-value=15 Score=35.96 Aligned_cols=42 Identities=12% Similarity=0.247 Sum_probs=29.8
Q ss_pred HHhHHHHHHHHHHHHHcCCCccc--------cCCCCcchHHHHHHHHhhC
Q psy15126 61 EKTLKRLADISKAFSDAGAHIVA--------PSDMMDNRIHAIKQSLFTS 102 (300)
Q Consensus 61 d~Tl~~l~~~A~~~A~aGad~vA--------PSdmMDgrv~air~aLd~~ 102 (300)
-.|.+.+++++.+++..|.|+|= |-.-+.-|+....++++.+
T Consensus 173 GLs~~~~a~~~ye~~~GGlDfiKDDE~~~~q~f~p~~eRv~~v~eai~rA 222 (432)
T 3nwr_A 173 GLSAAETAALVRELCEAGVDFIKDDEVCANPAHAPLAERVRAVMSEVRRY 222 (432)
T ss_dssp CCCHHHHHHHHHHHHHHTCSEEECCTTCSSCTTSCHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHhcCCceeECCCCCCCCCcccHHHHHHHHHHHHHHH
Confidence 46889999999999999999872 1233455666665555543
No 200
>1kgs_A DRRD, DNA binding response regulator D; DNA-binding protein, ALPH-beta sandwich, winged-helix, helix helix, DNA binding protein; HET: DNA MSE; 1.50A {Thermotoga maritima} SCOP: a.4.6.1 c.23.1.1 PDB: 3nnn_A*
Probab=63.27 E-value=30 Score=27.75 Aligned_cols=49 Identities=10% Similarity=0.200 Sum_probs=33.8
Q ss_pred hcCCceeeccCcch---HHHHHHHHHhhCCCCCEEeEecccccHHHHHHHhC
Q psy15126 212 SQGADFLMVKPALP---YLDIISEVKSRHPAYPLFVYQVSGEYAMLAFAAQA 260 (300)
Q Consensus 212 ~~GADivmVkPsmm---~ld~Ir~~~d~~~~vpi~aY~vSgeY~~~r~Aa~~ 260 (300)
+...|+|++--.|+ -++.++++++.+|++||+..+..........+.+.
T Consensus 44 ~~~~dlvllD~~l~~~~g~~~~~~lr~~~~~~~ii~ls~~~~~~~~~~~~~~ 95 (225)
T 1kgs_A 44 NEPFDVVILDIMLPVHDGWEILKSMRESGVNTPVLMLTALSDVEYRVKGLNM 95 (225)
T ss_dssp HSCCSEEEEESCCSSSCHHHHHHHHHHTTCCCCEEEEESSCHHHHHHHTCCC
T ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHhcCCCCCEEEEeCCCCHHHHHHHHhC
Confidence 45679988775543 68899999988889999999764443333444333
No 201
>1zh2_A KDP operon transcriptional regulatory protein KDPE; two-component system, gene regulation, transcription factor, KDP potassium transport system; 2.00A {Escherichia coli} SCOP: c.23.1.1 PDB: 1zh4_A
Probab=63.10 E-value=37 Score=23.92 Aligned_cols=58 Identities=22% Similarity=0.411 Sum_probs=37.4
Q ss_pred hcCCceeeccCcch---HHHHHHHHHhhCCCCCEEeEecccccHHHHHHHhCCCCCHHHHHHHHHHHHHHcCCCEEEecc
Q psy15126 212 SQGADFLMVKPALP---YLDIISEVKSRHPAYPLFVYQVSGEYAMLAFAAQAGALDLKRALMETLTCLRRGGADVIISYY 288 (300)
Q Consensus 212 ~~GADivmVkPsmm---~ld~Ir~~~d~~~~vpi~aY~vSgeY~~~r~Aa~~~~~n~~eal~E~~~~~~r~GAD~Ii~y~ 288 (300)
+...|+|++-..|+ -++.+++++ +++.+|++..+.+..... ....+ +.||+-.+.||
T Consensus 43 ~~~~dlvi~D~~l~~~~g~~~~~~l~-~~~~~~ii~~s~~~~~~~------------------~~~~~-~~g~~~~l~Kp 102 (121)
T 1zh2_A 43 TRKPDLIILDLGLPDGDGIEFIRDLR-QWSAVPVIVLSARSEESD------------------KIAAL-DAGADDYLSKP 102 (121)
T ss_dssp HHCCSEEEEESEETTEEHHHHHHHHH-TTCCCCEEEEESCCSHHH------------------HHHHH-HHTCSEEEESS
T ss_pred cCCCCEEEEeCCCCCCcHHHHHHHHH-hCCCCcEEEEECCCCHHH------------------HHHHH-hcCCCeEEeCC
Confidence 34578888775543 578888887 467899998865322111 11233 57888888887
Q ss_pred h
Q psy15126 289 T 289 (300)
Q Consensus 289 A 289 (300)
-
T Consensus 103 ~ 103 (121)
T 1zh2_A 103 F 103 (121)
T ss_dssp C
T ss_pred c
Confidence 3
No 202
>3f4w_A Putative hexulose 6 phosphate synthase; humps, malonate, lyase; 1.65A {Salmonella typhimurium} SCOP: c.1.2.0
Probab=62.57 E-value=29 Score=28.65 Aligned_cols=33 Identities=18% Similarity=0.332 Sum_probs=24.3
Q ss_pred cCCceeecc-Cc-ch-HHHHHHHHHhhCCCCCEEeE
Q psy15126 213 QGADFLMVK-PA-LP-YLDIISEVKSRHPAYPLFVY 245 (300)
Q Consensus 213 ~GADivmVk-Ps-mm-~ld~Ir~~~d~~~~vpi~aY 245 (300)
.|+|+||+. |- +. =++.|+++++.++++||..-
T Consensus 24 ~~~diie~G~p~~~~~g~~~i~~ir~~~~~~~i~~~ 59 (211)
T 3f4w_A 24 DDVDIIEVGTPFLIREGVNAIKAIKEKYPHKEVLAD 59 (211)
T ss_dssp GGCSEEEECHHHHHHHTTHHHHHHHHHCTTSEEEEE
T ss_pred cCccEEEeCcHHHHhccHHHHHHHHHhCCCCEEEEE
Confidence 599999887 43 22 36788888887778998543
No 203
>1zgz_A Torcad operon transcriptional regulatory protein; two-component system, gene regulation, transcription factor, respiratory system; 1.80A {Escherichia coli} SCOP: c.23.1.1
Probab=62.51 E-value=39 Score=24.01 Aligned_cols=56 Identities=14% Similarity=0.197 Sum_probs=36.7
Q ss_pred cCCceeeccCcc---hHHHHHHHHHhhCCCCCEEeEecccccHHHHHHHhCCCCCHHHHHHHHHHHHHHcCCCEEEecc
Q psy15126 213 QGADFLMVKPAL---PYLDIISEVKSRHPAYPLFVYQVSGEYAMLAFAAQAGALDLKRALMETLTCLRRGGADVIISYY 288 (300)
Q Consensus 213 ~GADivmVkPsm---m~ld~Ir~~~d~~~~vpi~aY~vSgeY~~~r~Aa~~~~~n~~eal~E~~~~~~r~GAD~Ii~y~ 288 (300)
...|+|++--.| .-++.++++++ ++.+||+..+.+.... . ....+ +.||+-.+.||
T Consensus 45 ~~~dlvi~d~~l~~~~g~~~~~~l~~-~~~~~ii~~s~~~~~~---------------~---~~~~~-~~ga~~~l~Kp 103 (122)
T 1zgz_A 45 QSVDLILLDINLPDENGLMLTRALRE-RSTVGIILVTGRSDRI---------------D---RIVGL-EMGADDYVTKP 103 (122)
T ss_dssp SCCSEEEEESCCSSSCHHHHHHHHHT-TCCCEEEEEESSCCHH---------------H---HHHHH-HHTCSEEEESS
T ss_pred CCCCEEEEeCCCCCCChHHHHHHHHh-cCCCCEEEEECCCChh---------------h---HHHHH-HhCHHHHccCC
Confidence 456888876444 36788888887 6789999886532211 1 12233 57888888887
No 204
>1p6q_A CHEY2; chemotaxis, signal transduction, response regulator, structural proteomics in europe, spine, structural genomics; NMR {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1p6u_A
Probab=62.10 E-value=23 Score=25.57 Aligned_cols=58 Identities=10% Similarity=0.193 Sum_probs=37.3
Q ss_pred cCCceeeccCcc---hHHHHHHHHHhh--CCCCCEEeEecccccHHHHHHHhCCCCCHHHHHHHHHHHHHHcCCCEEEec
Q psy15126 213 QGADFLMVKPAL---PYLDIISEVKSR--HPAYPLFVYQVSGEYAMLAFAAQAGALDLKRALMETLTCLRRGGADVIISY 287 (300)
Q Consensus 213 ~GADivmVkPsm---m~ld~Ir~~~d~--~~~vpi~aY~vSgeY~~~r~Aa~~~~~n~~eal~E~~~~~~r~GAD~Ii~y 287 (300)
...|+|++--.| .-++.++++++. ++++||+..+.+..... ....+ +.||+-.+.|
T Consensus 50 ~~~dlvl~D~~l~~~~g~~~~~~l~~~~~~~~~~ii~~s~~~~~~~------------------~~~~~-~~g~~~~l~K 110 (129)
T 1p6q_A 50 NPHHLVISDFNMPKMDGLGLLQAVRANPATKKAAFIILTAQGDRAL------------------VQKAA-ALGANNVLAK 110 (129)
T ss_dssp SCCSEEEECSSSCSSCHHHHHHHHTTCTTSTTCEEEECCSCCCHHH------------------HHHHH-HHTCSCEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhcCccccCCCEEEEeCCCCHHH------------------HHHHH-HcCCCEEEEC
Confidence 356888876544 367888888775 57899998855332211 11223 5788888888
Q ss_pred ch
Q psy15126 288 YT 289 (300)
Q Consensus 288 ~A 289 (300)
|-
T Consensus 111 P~ 112 (129)
T 1p6q_A 111 PF 112 (129)
T ss_dssp CS
T ss_pred CC
Confidence 73
No 205
>1f76_A Dihydroorotate dehydrogenase; monomer, alpha-beta-barrel, FMN binding domain, orotate complex, oxidoreductase; HET: MSE FMN ORO; 2.50A {Bacteria} SCOP: c.1.4.1
Probab=61.84 E-value=43 Score=30.13 Aligned_cols=48 Identities=19% Similarity=0.179 Sum_probs=30.5
Q ss_pred HHHHHHHHHhhCC-CCCEEeEecccccHHHHHHHhCCCCCHHHHHHHHHHHHHHcCCCEEEecchHHH
Q psy15126 226 YLDIISEVKSRHP-AYPLFVYQVSGEYAMLAFAAQAGALDLKRALMETLTCLRRGGADVIISYYTPRV 292 (300)
Q Consensus 226 ~ld~Ir~~~d~~~-~vpi~aY~vSgeY~~~r~Aa~~~~~n~~eal~E~~~~~~r~GAD~Ii~y~A~~~ 292 (300)
.++.++++++..+ ++||++=. |..+.+++ .| .+ ++|||+|++.-+.-+
T Consensus 275 ~~~~i~~i~~~~~~~ipVi~~G--------------GI~~~~da-~~---~l-~~GAd~V~igr~~l~ 323 (336)
T 1f76_A 275 STEIIRRLSLELNGRLPIIGVG--------------GIDSVIAA-RE---KI-AAGASLVQIYSGFIF 323 (336)
T ss_dssp HHHHHHHHHHHHTTSSCEEEES--------------SCCSHHHH-HH---HH-HHTCSEEEESHHHHH
T ss_pred HHHHHHHHHHHhCCCCCEEEEC--------------CCCCHHHH-HH---HH-HCCCCEEEeeHHHHh
Confidence 3677788877643 68888642 34455433 23 33 479999999876543
No 206
>3mm4_A Histidine kinase homolog; receiver domain, CKI1, cytokinin signaling, ROS fold, CHEY-like, transferase; 2.00A {Arabidopsis thaliana} PDB: 3mmn_A
Probab=61.27 E-value=35 Score=27.78 Aligned_cols=66 Identities=11% Similarity=0.209 Sum_probs=41.8
Q ss_pred CCceeeccCcch---HHHHHHHHHhh----CCCCCEEeEecccccHHHHHHHhCCCCCHHHHHHHHHHHHHHcCCCEEEe
Q psy15126 214 GADFLMVKPALP---YLDIISEVKSR----HPAYPLFVYQVSGEYAMLAFAAQAGALDLKRALMETLTCLRRGGADVIIS 286 (300)
Q Consensus 214 GADivmVkPsmm---~ld~Ir~~~d~----~~~vpi~aY~vSgeY~~~r~Aa~~~~~n~~eal~E~~~~~~r~GAD~Ii~ 286 (300)
-.|+|++--.|+ =++.++++++. .+++||+..+.... +. +.+ ...+ +.||+-.+.
T Consensus 119 ~~dlillD~~lp~~~G~el~~~lr~~~~~~~~~~piI~ls~~~~-------------~~-~~~---~~~~-~~Ga~~~l~ 180 (206)
T 3mm4_A 119 PFDYIFMDCQMPEMDGYEATREIRKVEKSYGVRTPIIAVSGHDP-------------GS-EEA---RETI-QAGMDAFLD 180 (206)
T ss_dssp SCSEEEEESCCSSSCHHHHHHHHHHHHHTTTCCCCEEEEESSCC-------------CH-HHH---HHHH-HHTCSEEEE
T ss_pred CCCEEEEcCCCCCCCHHHHHHHHHhhhhhcCCCCcEEEEECCCC-------------cH-HHH---HHHH-hCCCCEEEc
Confidence 468887764443 57777777764 57899999854110 11 111 1233 689999999
Q ss_pred cchHHHHHHHh
Q psy15126 287 YYTPRVLEWLR 297 (300)
Q Consensus 287 y~A~~~ld~l~ 297 (300)
||-.++...|+
T Consensus 181 KP~~~L~~~i~ 191 (206)
T 3mm4_A 181 KSLNQLANVIR 191 (206)
T ss_dssp TTCTTHHHHHH
T ss_pred CcHHHHHHHHH
Confidence 98765555554
No 207
>3s1x_A Probable transaldolase; alpha-beta barrel, conformational selection, domain swapping transferase; HET: I22; 1.65A {Thermoplasma acidophilum} PDB: 3s1u_A* 3s1v_A* 3s0c_A* 3s1w_A*
Probab=61.22 E-value=8.1 Score=34.73 Aligned_cols=42 Identities=21% Similarity=0.129 Sum_probs=31.8
Q ss_pred HHHHHHHHHcCCCcccc------CCCCcc--hHHHHHHHHhhCCCCCCcccc
Q psy15126 68 ADISKAFSDAGAHIVAP------SDMMDN--RIHAIKQSLFTSRQSSTTGLL 111 (300)
Q Consensus 68 ~~~A~~~A~aGad~vAP------SdmMDg--rv~air~aLd~~g~~~~v~Im 111 (300)
..||+..|+|||..|+| ....|| .|..|.+.++..|+ ++-||
T Consensus 115 ~~QA~~Aa~AGa~yISPfvgRi~d~g~dG~~~v~~i~~~~~~~~~--~T~Il 164 (223)
T 3s1x_A 115 PIQALLAAKAGVTYVSPFVGRLDDIGEDGMQIIDMIRTIFNNYII--KTQIL 164 (223)
T ss_dssp HHHHHHHHHTTCSEEEEBSHHHHHTTSCTHHHHHHHHHHHHHTTC--CSEEE
T ss_pred HHHHHHHHHcCCeEEEeecchHhhcCCCHHHHHHHHHHHHHHcCC--CCEEE
Confidence 45999999999999999 111233 58888999999888 34566
No 208
>2yci_X 5-methyltetrahydrofolate corrinoid/iron sulfur PR methyltransferase; 1.78A {Carboxydothermus hydrogenoformans} PDB: 2ycj_A* 2yck_X*
Probab=60.91 E-value=70 Score=28.88 Aligned_cols=75 Identities=12% Similarity=0.118 Sum_probs=45.2
Q ss_pred hhcCCceeeccCcc--h-----HHHHHHHHHhhCCCCCEEeEecccccHHHHHHHhC--C--CCC---H-HHHHHHHHHH
Q psy15126 211 VSQGADFLMVKPAL--P-----YLDIISEVKSRHPAYPLFVYQVSGEYAMLAFAAQA--G--ALD---L-KRALMETLTC 275 (300)
Q Consensus 211 a~~GADivmVkPsm--m-----~ld~Ir~~~d~~~~vpi~aY~vSgeY~~~r~Aa~~--~--~~n---~-~eal~E~~~~ 275 (300)
+++|||||=|.-.. . .+.+|+.+++.+ ++||..= |..-.-++.|.+. | .+| . ++-+-+.+.-
T Consensus 44 v~~GAdiIDIg~~s~~~eE~~rv~~vi~~l~~~~-~~pisID--T~~~~v~~aal~a~~Ga~iINdvs~~~d~~~~~~~~ 120 (271)
T 2yci_X 44 AEKGAHYLDVNTGPTADDPVRVMEWLVKTIQEVV-DLPCCLD--STNPDAIEAGLKVHRGHAMINSTSADQWKMDIFFPM 120 (271)
T ss_dssp HHTTCSEEEEECCSCSSCHHHHHHHHHHHHHHHC-CCCEEEE--CSCHHHHHHHHHHCCSCCEEEEECSCHHHHHHHHHH
T ss_pred HHCCCCEEEEcCCcCchhHHHHHHHHHHHHHHhC-CCeEEEe--CCCHHHHHHHHHhCCCCCEEEECCCCccccHHHHHH
Confidence 89999999776421 1 566777777765 7998766 4466666777654 4 222 1 1211233333
Q ss_pred HHHcCCCEEEecc
Q psy15126 276 LRRGGADVIISYY 288 (300)
Q Consensus 276 ~~r~GAD~Ii~y~ 288 (300)
.++-|+-+|+...
T Consensus 121 ~a~~~~~vv~m~~ 133 (271)
T 2yci_X 121 AKKYEAAIIGLTM 133 (271)
T ss_dssp HHHHTCEEEEESC
T ss_pred HHHcCCCEEEEec
Confidence 3456888887665
No 209
>2rdm_A Response regulator receiver protein; structural genomics, unknown function, PSI-2, protein struct initiative; HET: MSE; 1.76A {Sinorhizobium medicae}
Probab=60.81 E-value=15 Score=26.50 Aligned_cols=38 Identities=8% Similarity=0.066 Sum_probs=28.8
Q ss_pred CCceeeccCc----chHHHHHHHHHhhCCCCCEEeEeccccc
Q psy15126 214 GADFLMVKPA----LPYLDIISEVKSRHPAYPLFVYQVSGEY 251 (300)
Q Consensus 214 GADivmVkPs----mm~ld~Ir~~~d~~~~vpi~aY~vSgeY 251 (300)
..|+|++--. +.-++.++++++.++++||+..+.....
T Consensus 50 ~~dlvi~d~~l~~~~~g~~~~~~l~~~~~~~~ii~~s~~~~~ 91 (132)
T 2rdm_A 50 AIDGVVTDIRFCQPPDGWQVARVAREIDPNMPIVYISGHAAL 91 (132)
T ss_dssp CCCEEEEESCCSSSSCHHHHHHHHHHHCTTCCEEEEESSCCT
T ss_pred CCCEEEEeeeCCCCCCHHHHHHHHHhcCCCCCEEEEeCCccH
Confidence 5799988643 4468889999888889999999764433
No 210
>1to3_A Putative aldolase YIHT; beta-alpha barrel, structural genomics, PSI, protein structure initiative; 2.70A {Salmonella typhimurium} SCOP: c.1.10.1
Probab=60.81 E-value=82 Score=28.75 Aligned_cols=64 Identities=19% Similarity=0.192 Sum_probs=36.7
Q ss_pred hhcCCceeeccCc-----c-hHHHHHHHHHhhCCCCC-EEeEecccccHHHHHHHhCCCCCHHHHHHHHHHHHHHcCCCE
Q psy15126 211 VSQGADFLMVKPA-----L-PYLDIISEVKSRHPAYP-LFVYQVSGEYAMLAFAAQAGALDLKRALMETLTCLRRGGADV 283 (300)
Q Consensus 211 a~~GADivmVkPs-----m-m~ld~Ir~~~d~~~~vp-i~aY~vSgeY~~~r~Aa~~~~~n~~eal~E~~~~~~r~GAD~ 283 (300)
.+.|||+|=|.|. . ..+..+.+..+.+..+| |.. || -.+. +.++|.+...+++||+.
T Consensus 187 ~~lGaD~iKv~~~~~~~g~~~~~~~vv~~~~~~~~~P~Vv~---aG------------G~~~-~~~~~~~~~a~~aGa~G 250 (304)
T 1to3_A 187 GDSGADLYKVEMPLYGKGARSDLLTASQRLNGHINMPWVIL---SS------------GVDE-KLFPRAVRVAMEAGASG 250 (304)
T ss_dssp TTSSCSEEEECCGGGGCSCHHHHHHHHHHHHHTCCSCEEEC---CT------------TSCT-TTHHHHHHHHHHTTCCE
T ss_pred HHcCCCEEEeCCCcCCCCCHHHHHHHHHhccccCCCCeEEE---ec------------CCCH-HHHHHHHHHHHHcCCeE
Confidence 5789999988884 1 12222222344444678 543 22 1233 34455566666889999
Q ss_pred EEecchH
Q psy15126 284 IISYYTP 290 (300)
Q Consensus 284 Ii~y~A~ 290 (300)
+++--+.
T Consensus 251 v~vGRaI 257 (304)
T 1to3_A 251 FLAGRAV 257 (304)
T ss_dssp EEESHHH
T ss_pred EEEehHH
Confidence 9875443
No 211
>1p2f_A Response regulator; DRRB, OMPR/PHOB, transcription; HET: MSE; 1.80A {Thermotoga maritima} SCOP: a.4.6.1 c.23.1.1 PDB: 3nns_A*
Probab=60.73 E-value=31 Score=27.78 Aligned_cols=38 Identities=11% Similarity=0.198 Sum_probs=28.8
Q ss_pred cCCceeeccCcc---hHHHHHHHHHhhCCCCCEEeEecccc
Q psy15126 213 QGADFLMVKPAL---PYLDIISEVKSRHPAYPLFVYQVSGE 250 (300)
Q Consensus 213 ~GADivmVkPsm---m~ld~Ir~~~d~~~~vpi~aY~vSge 250 (300)
...|+|++--.| .-++.++++++.++++||+..+....
T Consensus 42 ~~~dlvllD~~lp~~~g~~~~~~lr~~~~~~~ii~lt~~~~ 82 (220)
T 1p2f_A 42 EAFHVVVLDVMLPDYSGYEICRMIKETRPETWVILLTLLSD 82 (220)
T ss_dssp SCCSEEEEESBCSSSBHHHHHHHHHHHCTTSEEEEEESCCS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCCCcEEEEEcCCC
Confidence 456888776554 36889999998888999999976443
No 212
>3b0p_A TRNA-dihydrouridine synthase; TIM barrel, oxidoreductase; HET: FMN; 1.70A {Thermus thermophilus} PDB: 3b0u_X* 3b0v_C*
Probab=60.64 E-value=20 Score=33.09 Aligned_cols=59 Identities=19% Similarity=0.272 Sum_probs=38.6
Q ss_pred hhcCCceeeccCcc---------------hHHHHHHHHHhhCCCCCEEeEecccccHHHHHHHhCCCCCHHHHHHHHHHH
Q psy15126 211 VSQGADFLMVKPAL---------------PYLDIISEVKSRHPAYPLFVYQVSGEYAMLAFAAQAGALDLKRALMETLTC 275 (300)
Q Consensus 211 a~~GADivmVkPsm---------------m~ld~Ir~~~d~~~~vpi~aY~vSgeY~~~r~Aa~~~~~n~~eal~E~~~~ 275 (300)
.++|+|.|.|-+.. ...+.|+++++.++++||++= | |..+.+++ .+ .
T Consensus 154 ~~aG~d~I~V~~r~~~~g~~g~~~~~~~~~~~~~i~~ik~~~~~iPVian---G-----------gI~s~eda-~~---~ 215 (350)
T 3b0p_A 154 AEAGVKVFVVHARSALLALSTKANREIPPLRHDWVHRLKGDFPQLTFVTN---G-----------GIRSLEEA-LF---H 215 (350)
T ss_dssp HHTTCCEEEEECSCBC----------CCCCCHHHHHHHHHHCTTSEEEEE---S-----------SCCSHHHH-HH---H
T ss_pred HHcCCCEEEEecCchhcccCcccccCCCcccHHHHHHHHHhCCCCeEEEE---C-----------CcCCHHHH-HH---H
Confidence 57899988887631 147888999888778998863 2 23344333 22 2
Q ss_pred HHHcCCCEEEecch
Q psy15126 276 LRRGGADVIISYYT 289 (300)
Q Consensus 276 ~~r~GAD~Ii~y~A 289 (300)
+ + |||.||+--+
T Consensus 216 l-~-GaD~V~iGRa 227 (350)
T 3b0p_A 216 L-K-RVDGVMLGRA 227 (350)
T ss_dssp H-T-TSSEEEECHH
T ss_pred H-h-CCCEEEECHH
Confidence 3 3 8999998644
No 213
>3ajx_A 3-hexulose-6-phosphate synthase; HPS, OMPDC suprafamily, LYA; 1.60A {Mycobacterium gastri}
Probab=60.55 E-value=25 Score=29.02 Aligned_cols=62 Identities=18% Similarity=0.203 Sum_probs=42.7
Q ss_pred HHHHHHHHhCCCcEEEeeecCCCCCCCCcceeeCCCCceecHHhHHHHHHHHHHHHHcCCCccccCCCCc-chHHHHHHH
Q psy15126 20 QVIPMIRKQFPSLTIACDVCLCGYTSHGHCAIFNEDGSIHYEKTLKRLADISKAFSDAGAHIVAPSDMMD-NRIHAIKQS 98 (300)
Q Consensus 20 ~~i~~ik~~~p~l~i~~Dvclc~yt~hGHcgi~~~~g~i~nd~Tl~~l~~~A~~~A~aGad~vAPSdmMD-grv~air~a 98 (300)
+.|+.||+.+|++-|+.|.-+. | |- .| .+..++++|||.|......+ ..+...++.
T Consensus 42 ~~i~~l~~~~~~~~i~~~l~~~-----------d----i~--~~------~~~~a~~~Gad~v~vh~~~~~~~~~~~~~~ 98 (207)
T 3ajx_A 42 SVITAVKKAHPDKIVFADMKTM-----------D----AG--EL------EADIAFKAGADLVTVLGSADDSTIAGAVKA 98 (207)
T ss_dssp HHHHHHHHHSTTSEEEEEEEEC-----------S----CH--HH------HHHHHHHTTCSEEEEETTSCHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCeEEEEEEec-----------C----cc--HH------HHHHHHhCCCCEEEEeccCChHHHHHHHHH
Confidence 4789999999998888887531 1 11 11 23467789999997444333 567788888
Q ss_pred HhhCCC
Q psy15126 99 LFTSRQ 104 (300)
Q Consensus 99 Ld~~g~ 104 (300)
+.+.|.
T Consensus 99 ~~~~g~ 104 (207)
T 3ajx_A 99 AQAHNK 104 (207)
T ss_dssp HHHHTC
T ss_pred HHHcCC
Confidence 877776
No 214
>2b7n_A Probable nicotinate-nucleotide pyrophosphorylase; quinolinate phosphoribosyltransferase, quinolinic acid, HELI pylori, transferase; HET: NTM; 2.30A {Helicobacter pylori} PDB: 2b7p_A* 2b7q_A*
Probab=60.29 E-value=15 Score=33.10 Aligned_cols=58 Identities=22% Similarity=0.281 Sum_probs=37.7
Q ss_pred hhcCCceeeccCcch-HHHHHHHHHh-hCCCCCEEeEecccccHHHHHHHhCCCCCHHHHHHHHHHHHHHcCCCEEEecc
Q psy15126 211 VSQGADFLMVKPALP-YLDIISEVKS-RHPAYPLFVYQVSGEYAMLAFAAQAGALDLKRALMETLTCLRRGGADVIISYY 288 (300)
Q Consensus 211 a~~GADivmVkPsmm-~ld~Ir~~~d-~~~~vpi~aY~vSgeY~~~r~Aa~~~~~n~~eal~E~~~~~~r~GAD~Ii~y~ 288 (300)
+++|||+||+-+-.+ ++..+++.++ .+|++||.+= | -+|. |.+..+.++|||.|-+-.
T Consensus 199 ~~aGaD~I~ld~~~~~~l~~~v~~l~~~~~~~~i~As---G------------GI~~-----~ni~~~~~aGaD~i~vGs 258 (273)
T 2b7n_A 199 MNAGADIVMCDNLSVLETKEIAAYRDAHYPFVLLEAS---G------------NISL-----ESINAYAKSGVDAISVGA 258 (273)
T ss_dssp HHHTCSEEEEETCCHHHHHHHHHHHHHHCTTCEEEEE---S------------SCCT-----TTHHHHHTTTCSEEECTH
T ss_pred HHcCCCEEEECCCCHHHHHHHHHHhhccCCCcEEEEE---C------------CCCH-----HHHHHHHHcCCcEEEEcH
Confidence 468999999877422 5555444443 4888998764 3 1343 334466689999988744
No 215
>1tv5_A Dhodehase, dihydroorotate dehydrogenase homolog, mitochondri, dihydroorotate; alpha-beta barrel, TIM barrel, oxidoreductase; HET: A26 FMN ORO N8E; 2.40A {Plasmodium falciparum} SCOP: c.1.4.1
Probab=59.94 E-value=28 Score=33.83 Aligned_cols=48 Identities=21% Similarity=0.221 Sum_probs=32.2
Q ss_pred HHHHHHHHHhhC-CCCCEEeEecccccHHHHHHHhCCCCCHHHHHHHHHHHHHHcCCCEEEecchHHH
Q psy15126 226 YLDIISEVKSRH-PAYPLFVYQVSGEYAMLAFAAQAGALDLKRALMETLTCLRRGGADVIISYYTPRV 292 (300)
Q Consensus 226 ~ld~Ir~~~d~~-~~vpi~aY~vSgeY~~~r~Aa~~~~~n~~eal~E~~~~~~r~GAD~Ii~y~A~~~ 292 (300)
.++.|+++++.. .++||++=. |..+.++| .| .+ ++|||+|+++-+.-+
T Consensus 359 sl~~i~~v~~~v~~~iPVIg~G--------------GI~s~~DA-~e---~l-~aGAd~Vqigrall~ 407 (443)
T 1tv5_A 359 STKFICEMYNYTNKQIPIIASG--------------GIFSGLDA-LE---KI-EAGASVCQLYSCLVF 407 (443)
T ss_dssp HHHHHHHHHHHTTTCSCEEEES--------------SCCSHHHH-HH---HH-HTTEEEEEESHHHHH
T ss_pred HHHHHHHHHHHcCCCCcEEEEC--------------CCCCHHHH-HH---HH-HcCCCEEEEcHHHHh
Confidence 478888888874 379998752 34455443 23 34 589999999977443
No 216
>4dpp_A DHDPS 2, dihydrodipicolinate synthase 2, chloroplastic; amino-acid biosynthesis, (S)-lysine biosynthesis VIA DAP PAT (beta/alpha)8-barrel; 2.00A {Arabidopsis thaliana} PDB: 4dpq_A* 3tuu_A*
Probab=59.66 E-value=54 Score=31.14 Aligned_cols=47 Identities=21% Similarity=0.160 Sum_probs=29.3
Q ss_pred CCCCceecHHhHHHHHHHHHHHHHcCCCcccc--------CCCCcchHHHHHHHHhhCC
Q psy15126 53 NEDGSIHYEKTLKRLADISKAFSDAGAHIVAP--------SDMMDNRIHAIKQSLFTSR 103 (300)
Q Consensus 53 ~~~g~i~nd~Tl~~l~~~A~~~A~aGad~vAP--------SdmMDgrv~air~aLd~~g 103 (300)
+++|+||.+ .++ +.+..+.+.|++-+.+ +-..+-|...++...+..+
T Consensus 72 ~~dg~ID~~-al~---~lv~~li~~Gv~Gl~v~GTTGE~~~Ls~eEr~~vi~~~ve~~~ 126 (360)
T 4dpp_A 72 LPDGRFDLE-AYD---DLVNIQIQNGAEGVIVGGTTGEGQLMSWDEHIMLIGHTVNCFG 126 (360)
T ss_dssp CTTSSBCHH-HHH---HHHHHHHHTTCCEEEESSTTTTGGGSCHHHHHHHHHHHHHHHT
T ss_pred CCCCCcCHH-HHH---HHHHHHHHcCCCEEEecccccChhhCCHHHHHHHHHHHHHHhC
Confidence 567877754 333 4444567899997776 3345666666666666543
No 217
>2e28_A Pyruvate kinase, PK; allosteric, transferase; 2.40A {Geobacillus stearothermophilus}
Probab=59.21 E-value=73 Score=32.24 Aligned_cols=119 Identities=17% Similarity=0.147 Sum_probs=73.5
Q ss_pred HHHHHcCCCccccCCCC-cchHHHHHHHHhhCCCCCCcccccchhhhhcccchhhhhhhcCCCCCCCcceeeCCCCCCce
Q psy15126 72 KAFSDAGAHIVAPSDMM-DNRIHAIKQSLFTSRQSSTTGLLSYSAKFCSAFYGPFREAAGSAPTFGDRSCYQLPCGSKGL 150 (300)
Q Consensus 72 ~~~A~aGad~vAPSdmM-Dgrv~air~aLd~~g~~~~v~ImsysaK~aS~~YGPfRda~gS~~~~gdr~~yQ~~~~~~~~ 150 (300)
....+.|+|.|+-|--- .-.+..+|+.|.+.|. .++.|+
T Consensus 180 ~~~l~~g~d~v~~sfV~~a~dv~~~~~~l~~~~~-~~~~ii--------------------------------------- 219 (587)
T 2e28_A 180 LFGIRQGIDFIAASFVRRASDVLEIRELLEAHDA-LHIQII--------------------------------------- 219 (587)
T ss_dssp HHHHHHTCSEEEESSCCSHHHHHHHHHHHHHTTC-TTSEEE---------------------------------------
T ss_pred HHHHHcCCCEEEECCCCCHHHHHHHHHHHHHcCC-CCceEE---------------------------------------
Confidence 35567899988886543 3457788888877764 233333
Q ss_pred EEEEeecccCCCCCCccccccCCCcccchHhHHHHHHHHHhhhcccccCCCCCccccchhhhcCCceeeccCcch-----
Q psy15126 151 AIRAAVCLCGYTSHGHCAIFNEDGSIHYEKTLKRLADISKAFSDAVYVPNHNTDRFQARDVSQGADFLMVKPALP----- 225 (300)
Q Consensus 151 ai~~dvclc~yt~hGHcgi~~~~g~i~nd~tl~~l~~~a~~~a~~~~~~~~n~~~~~~~Da~~GADivmVkPsmm----- 225 (300)
+ +|++-+-++.|-+|. +. +|.|||+|+..
T Consensus 220 ---a--------------------kIE~~eav~nldeIl----------------------~~-~DgImVargDLgvei~ 253 (587)
T 2e28_A 220 ---A--------------------KIENEEGVANIDEIL----------------------EA-ADGLMVARGDLGVEIP 253 (587)
T ss_dssp ---E--------------------EECSHHHHHTHHHHH----------------------HH-SSEEEEEHHHHHHHSC
T ss_pred ---E--------------------EECCHHHHHhHHHHH----------------------Hh-CCEEEEcCchhhhhcC
Confidence 2 467777777777772 22 59999999722
Q ss_pred -------HHHHHHHHHhhCCCCCEE-eEecccccHHHHHHHhCCCCCHHHHHHHHHHHHHHcCCCEEEe
Q psy15126 226 -------YLDIISEVKSRHPAYPLF-VYQVSGEYAMLAFAAQAGALDLKRALMETLTCLRRGGADVIIS 286 (300)
Q Consensus 226 -------~ld~Ir~~~d~~~~vpi~-aY~vSgeY~~~r~Aa~~~~~n~~eal~E~~~~~~r~GAD~Ii~ 286 (300)
+=.+|++.+.. +.|+. +=|. .-+|. .++...|.=+......+ -.|+|.||.
T Consensus 254 ~~~v~~~qk~ii~~~~~~--gkpvi~ATQm--LeSMi-----~~p~PTRAE~sDvanav-~dG~DavML 312 (587)
T 2e28_A 254 AEEVPLIQKLLIKKSNML--GKPVITATQM--LDSMQ-----RNPRPTRAEASDVANAI-FDGTDAVML 312 (587)
T ss_dssp GGGHHHHHHHHHHHHHHH--TCCEEEESSS--SGGGG-----TCSSCCHHHHHHHHHHH-HHTCSEEEE
T ss_pred HHHHHHHHHHHHHHHHHc--CCCeEEechh--hHhhc-----cCCCccHHHHhccchhh-hhCcceeee
Confidence 23345555554 35544 4444 22232 24555565556677777 479999997
No 218
>1oy0_A Ketopantoate hydroxymethyltransferase; domain swapping, structural genomics, PSI, protein structure initiative; 2.80A {Mycobacterium tuberculosis} SCOP: c.1.12.8
Probab=59.16 E-value=25 Score=32.68 Aligned_cols=72 Identities=10% Similarity=0.111 Sum_probs=41.2
Q ss_pred hcCCceeeccCcchHHHHHHHHHhhCCCCCEEeEec-----ccccHHHHHHHhCCCCCHHHHHHHHHHHHHHcCCCEEEe
Q psy15126 212 SQGADFLMVKPALPYLDIISEVKSRHPAYPLFVYQV-----SGEYAMLAFAAQAGALDLKRALMETLTCLRRGGADVIIS 286 (300)
Q Consensus 212 ~~GADivmVkPsmm~ld~Ir~~~d~~~~vpi~aY~v-----SgeY~~~r~Aa~~~~~n~~eal~E~~~~~~r~GAD~Ii~ 286 (300)
++||+.|-+.=+.-+.+.||.+.+. .+|+|.+== ....+-||--..- +..+.++|-.+.+.++|||+|..
T Consensus 124 eaGa~aVklEdg~e~~~~I~al~~a--gIpV~gHiGLtPqsv~~~ggf~v~grt---~~a~~~i~rA~a~~eAGA~~ivl 198 (281)
T 1oy0_A 124 DGGAHAVKLEGGERVAEQIACLTAA--GIPVMAHIGFTPQSVNTLGGFRVQGRG---DAAEQTIADAIAVAEAGAFAVVM 198 (281)
T ss_dssp TTCCSEEEEEBSGGGHHHHHHHHHH--TCCEEEEEECCC--------------C---HHHHHHHHHHHHHHHHTCSEEEE
T ss_pred HhCCeEEEECCcHHHHHHHHHHHHC--CCCEEeeecCCcceecccCCeEEEeCc---HHHHHHHHHHHHHHHcCCcEEEE
Confidence 4999999555454578999999887 589985411 0111222211111 12244555566666899999987
Q ss_pred cc
Q psy15126 287 YY 288 (300)
Q Consensus 287 y~ 288 (300)
--
T Consensus 199 E~ 200 (281)
T 1oy0_A 199 EM 200 (281)
T ss_dssp ES
T ss_pred ec
Confidence 43
No 219
>1h5y_A HISF; histidine biosynthesis, TIM-barrel; 2.0A {Pyrobaculum aerophilum} SCOP: c.1.2.1
Probab=58.97 E-value=26 Score=29.02 Aligned_cols=34 Identities=21% Similarity=0.364 Sum_probs=23.8
Q ss_pred hhcCCceeecc------Ccc-hHHHHHHHHHhhCCCCCEEeE
Q psy15126 211 VSQGADFLMVK------PAL-PYLDIISEVKSRHPAYPLFVY 245 (300)
Q Consensus 211 a~~GADivmVk------Psm-m~ld~Ir~~~d~~~~vpi~aY 245 (300)
.+.|+|.|.|- |.. ..++.|+++++.+ ++|+..-
T Consensus 43 ~~~G~d~i~v~~~~~~~~~~~~~~~~i~~i~~~~-~ipvi~~ 83 (253)
T 1h5y_A 43 EEEGADEIAILDITAAPEGRATFIDSVKRVAEAV-SIPVLVG 83 (253)
T ss_dssp HHTTCSCEEEEECCCCTTTHHHHHHHHHHHHHHC-SSCEEEE
T ss_pred HHcCCCEEEEEeCCccccCCcccHHHHHHHHHhc-CCCEEEE
Confidence 57789866554 221 3688899998886 7998863
No 220
>3r8r_A Transaldolase; pentose phosphate pathway, schiff bases; 1.90A {Bacillus subtilis}
Probab=58.60 E-value=6.2 Score=35.18 Aligned_cols=42 Identities=24% Similarity=0.222 Sum_probs=31.5
Q ss_pred HHHHHHHHHcCCCcccc------CCCCc--chHHHHHHHHhhCCCCCCcccc
Q psy15126 68 ADISKAFSDAGAHIVAP------SDMMD--NRIHAIKQSLFTSRQSSTTGLL 111 (300)
Q Consensus 68 ~~~A~~~A~aGad~vAP------SdmMD--grv~air~aLd~~g~~~~v~Im 111 (300)
..||+..|+|||..|+| ....| ..|..|++.++..|+ ++-||
T Consensus 113 ~~Qa~~Aa~AGa~yISPfvgRi~d~~~dG~~~v~~i~~~~~~~~~--~t~il 162 (212)
T 3r8r_A 113 ANQALLAARAGATYVSPFLGRLDDIGHNGLDLISEVKQIFDIHGL--DTQII 162 (212)
T ss_dssp HHHHHHHHHHTCSEEEEBHHHHHHTTSCHHHHHHHHHHHHHHHTC--CCEEE
T ss_pred HHHHHHHHHcCCeEEEeccchhhhcCCChHHHHHHHHHHHHHcCC--CCEEE
Confidence 34999999999999999 11123 457888888888888 34566
No 221
>3cg0_A Response regulator receiver modulated diguanylate with PAS/PAC sensor; signal receiver domain, diguanylate cyclase; 2.15A {Desulfovibrio desulfuricans subsp}
Probab=57.32 E-value=52 Score=23.84 Aligned_cols=57 Identities=12% Similarity=0.057 Sum_probs=37.5
Q ss_pred hcCCceeecc---C-cchHHHHHHHHHhhCCCCCEEeEecccccHHHHHHHhCCCCCHHHHHHHHHHHHHHcCCCEEEec
Q psy15126 212 SQGADFLMVK---P-ALPYLDIISEVKSRHPAYPLFVYQVSGEYAMLAFAAQAGALDLKRALMETLTCLRRGGADVIISY 287 (300)
Q Consensus 212 ~~GADivmVk---P-smm~ld~Ir~~~d~~~~vpi~aY~vSgeY~~~r~Aa~~~~~n~~eal~E~~~~~~r~GAD~Ii~y 287 (300)
+...|+|++- | .+.-++.+++++.. +++||+..+....... ....+ +.||+-++.|
T Consensus 52 ~~~~dlii~d~~~~~~~~g~~~~~~l~~~-~~~~ii~ls~~~~~~~------------------~~~~~-~~g~~~~l~k 111 (140)
T 3cg0_A 52 DLRPDIALVDIMLCGALDGVETAARLAAG-CNLPIIFITSSQDVET------------------FQRAK-RVNPFGYLAK 111 (140)
T ss_dssp HHCCSEEEEESSCCSSSCHHHHHHHHHHH-SCCCEEEEECCCCHHH------------------HHHHH-TTCCSEEEEE
T ss_pred hCCCCEEEEecCCCCCCCHHHHHHHHHhC-CCCCEEEEecCCCHHH------------------HHHHH-hcCCCEEEeC
Confidence 3457998876 3 34467888888877 7899999865322111 11223 5788888888
Q ss_pred c
Q psy15126 288 Y 288 (300)
Q Consensus 288 ~ 288 (300)
|
T Consensus 112 p 112 (140)
T 3cg0_A 112 P 112 (140)
T ss_dssp S
T ss_pred C
Confidence 7
No 222
>3h1g_A Chemotaxis protein CHEY homolog; sulfate-bound CHEY, cytoplasm, flagellar rotatio magnesium, metal-binding, phosphoprotein; 1.70A {Helicobacter pylori} SCOP: c.23.1.1 PDB: 3gwg_A 3h1e_A 3h1f_A
Probab=57.04 E-value=24 Score=25.79 Aligned_cols=57 Identities=23% Similarity=0.371 Sum_probs=37.8
Q ss_pred CCceeeccCcch---HHHHHHHHHhh--CCCCCEEeEecccccHHHHHHHhCCCCCHHHHHHHHHHHHHHcCCCEEEecc
Q psy15126 214 GADFLMVKPALP---YLDIISEVKSR--HPAYPLFVYQVSGEYAMLAFAAQAGALDLKRALMETLTCLRRGGADVIISYY 288 (300)
Q Consensus 214 GADivmVkPsmm---~ld~Ir~~~d~--~~~vpi~aY~vSgeY~~~r~Aa~~~~~n~~eal~E~~~~~~r~GAD~Ii~y~ 288 (300)
..|+|++--.|+ -++.++++++. ++++||+..+....... ....+ +.||+-.++||
T Consensus 51 ~~dlvi~D~~~p~~~g~~~~~~lr~~~~~~~~pii~~s~~~~~~~------------------~~~~~-~~g~~~~l~KP 111 (129)
T 3h1g_A 51 DTKVLITDWNMPEMNGLDLVKKVRSDSRFKEIPIIMITAEGGKAE------------------VITAL-KAGVNNYIVKP 111 (129)
T ss_dssp TCCEEEECSCCSSSCHHHHHHHHHTSTTCTTCCEEEEESCCSHHH------------------HHHHH-HHTCCEEEESC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCCCCCeEEEEeCCCChHH------------------HHHHH-HcCccEEEeCC
Confidence 468887764443 68889998874 57899999865222111 11233 67888888888
Q ss_pred h
Q psy15126 289 T 289 (300)
Q Consensus 289 A 289 (300)
-
T Consensus 112 ~ 112 (129)
T 3h1g_A 112 F 112 (129)
T ss_dssp C
T ss_pred C
Confidence 4
No 223
>2jba_A Phosphate regulon transcriptional regulatory PROT; transcription factor, sensory transduction, phosphate regula transcription regulation; 1.45A {Escherichia coli} PDB: 2jba_B 1b00_A 2iyn_A 2jb9_A 1zes_A
Probab=56.66 E-value=30 Score=24.75 Aligned_cols=35 Identities=11% Similarity=0.263 Sum_probs=25.6
Q ss_pred cCCceeeccCcc---hHHHHHHHHHhhC--CCCCEEeEec
Q psy15126 213 QGADFLMVKPAL---PYLDIISEVKSRH--PAYPLFVYQV 247 (300)
Q Consensus 213 ~GADivmVkPsm---m~ld~Ir~~~d~~--~~vpi~aY~v 247 (300)
...|+|++--.| .-++.++++++.. +++||+..+.
T Consensus 45 ~~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~~~ii~~s~ 84 (127)
T 2jba_A 45 PWPDLILLAWMLPGGSGIQFIKHLRRESMTRDIPVVMLTA 84 (127)
T ss_dssp SCCSEEEEESEETTEEHHHHHHHHHTSTTTTTSCEEEEEE
T ss_pred cCCCEEEEecCCCCCCHHHHHHHHHhCcccCCCCEEEEeC
Confidence 346888776444 3678888888763 7899998855
No 224
>3lte_A Response regulator; structural genomics, PSI, protein structure initiative, NYSG YORK structural genomix research consortium, nysgxrc; 2.00A {Bermanella marisrubri}
Probab=56.63 E-value=29 Score=25.11 Aligned_cols=57 Identities=16% Similarity=0.208 Sum_probs=36.0
Q ss_pred hcCCceeeccCcch---HHHHHHHHHhhC--CCCCEEeEecccccHHHHHHHhCCCCCHHHHHHHHHHHHHHcCCCEEEe
Q psy15126 212 SQGADFLMVKPALP---YLDIISEVKSRH--PAYPLFVYQVSGEYAMLAFAAQAGALDLKRALMETLTCLRRGGADVIIS 286 (300)
Q Consensus 212 ~~GADivmVkPsmm---~ld~Ir~~~d~~--~~vpi~aY~vSgeY~~~r~Aa~~~~~n~~eal~E~~~~~~r~GAD~Ii~ 286 (300)
+...|+|++-..|+ -++.++++++.. +..||+..+.. +. +. ....+ +.||+-.+.
T Consensus 48 ~~~~dlii~d~~l~~~~g~~~~~~l~~~~~~~~~~ii~~~~~---------------~~-~~---~~~~~-~~g~~~~l~ 107 (132)
T 3lte_A 48 TFEPAIMTLDLSMPKLDGLDVIRSLRQNKVANQPKILVVSGL---------------DK-AK---LQQAV-TEGADDYLE 107 (132)
T ss_dssp HTCCSEEEEESCBTTBCHHHHHHHHHTTTCSSCCEEEEECCS---------------CS-HH---HHHHH-HHTCCEEEC
T ss_pred hcCCCEEEEecCCCCCCHHHHHHHHHhcCccCCCeEEEEeCC---------------Ch-HH---HHHHH-HhChHHHhh
Confidence 45679998876654 688899888764 45666655321 11 11 11233 678998888
Q ss_pred cc
Q psy15126 287 YY 288 (300)
Q Consensus 287 y~ 288 (300)
||
T Consensus 108 kP 109 (132)
T 3lte_A 108 KP 109 (132)
T ss_dssp SS
T ss_pred CC
Confidence 88
No 225
>2j48_A Two-component sensor kinase; pseudo-receiver, circadian clock, transferase, response regulator, histidine protein kinase; NMR {Synechococcus elongatus}
Probab=56.51 E-value=21 Score=24.68 Aligned_cols=55 Identities=15% Similarity=0.166 Sum_probs=36.8
Q ss_pred hcCCceeeccCcc---hHHHHHHHHHhhC--CCCCEEeEecccccHHHHHHHhCCCCCHHHHHHHHHHHHHHcCCCEEEe
Q psy15126 212 SQGADFLMVKPAL---PYLDIISEVKSRH--PAYPLFVYQVSGEYAMLAFAAQAGALDLKRALMETLTCLRRGGADVIIS 286 (300)
Q Consensus 212 ~~GADivmVkPsm---m~ld~Ir~~~d~~--~~vpi~aY~vSgeY~~~r~Aa~~~~~n~~eal~E~~~~~~r~GAD~Ii~ 286 (300)
+...|+|++--.+ .-++.++.++... +++||+..+.+.... ..+ +.|++-++.
T Consensus 43 ~~~~dlii~d~~~~~~~~~~~~~~l~~~~~~~~~~ii~~~~~~~~~---------------------~~~-~~g~~~~l~ 100 (119)
T 2j48_A 43 LLQPIVILMAWPPPDQSCLLLLQHLREHQADPHPPLVLFLGEPPVD---------------------PLL-TAQASAILS 100 (119)
T ss_dssp HHCCSEEEEECSTTCCTHHHHHHHHHHTCCCSSCCCEEEESSCCSS---------------------HHH-HHHCSEECS
T ss_pred hcCCCEEEEecCCCCCCHHHHHHHHHhccccCCCCEEEEeCCCCch---------------------hhh-hcCHHHhcc
Confidence 3467888876443 3678888888763 789999986532211 233 578888888
Q ss_pred cc
Q psy15126 287 YY 288 (300)
Q Consensus 287 y~ 288 (300)
||
T Consensus 101 kp 102 (119)
T 2j48_A 101 KP 102 (119)
T ss_dssp SC
T ss_pred CC
Confidence 87
No 226
>1xhf_A DYE resistance, aerobic respiration control protein ARCA; two-component system, gene regulation, transcription factor, anoxic redox control; 2.15A {Escherichia coli} SCOP: c.23.1.1 PDB: 1xhe_A
Probab=56.50 E-value=51 Score=23.42 Aligned_cols=58 Identities=16% Similarity=0.154 Sum_probs=37.6
Q ss_pred hcCCceeeccCcc---hHHHHHHHHHhhCCCCCEEeEecccccHHHHHHHhCCCCCHHHHHHHHHHHHHHcCCCEEEecc
Q psy15126 212 SQGADFLMVKPAL---PYLDIISEVKSRHPAYPLFVYQVSGEYAMLAFAAQAGALDLKRALMETLTCLRRGGADVIISYY 288 (300)
Q Consensus 212 ~~GADivmVkPsm---m~ld~Ir~~~d~~~~vpi~aY~vSgeY~~~r~Aa~~~~~n~~eal~E~~~~~~r~GAD~Ii~y~ 288 (300)
+...|+|++--.| .-++.++++++. +++|++..+.+.... .....+ +.||+-.+.||
T Consensus 45 ~~~~dlvi~D~~l~~~~g~~~~~~l~~~-~~~~ii~~s~~~~~~------------------~~~~~~-~~g~~~~l~KP 104 (123)
T 1xhf_A 45 EYDINLVIMDINLPGKNGLLLARELREQ-ANVALMFLTGRDNEV------------------DKILGL-EIGADDYITKP 104 (123)
T ss_dssp HSCCSEEEECSSCSSSCHHHHHHHHHHH-CCCEEEEEESCCSHH------------------HHHHHH-HHTCSEEEESS
T ss_pred cCCCCEEEEcCCCCCCCHHHHHHHHHhC-CCCcEEEEECCCChH------------------HHHHHH-hcCcceEEeCC
Confidence 3457888876544 357888888876 689999885422211 112233 57888888887
Q ss_pred h
Q psy15126 289 T 289 (300)
Q Consensus 289 A 289 (300)
-
T Consensus 105 ~ 105 (123)
T 1xhf_A 105 F 105 (123)
T ss_dssp C
T ss_pred C
Confidence 3
No 227
>1vhc_A Putative KHG/KDPG aldolase; structural genomics, unknown function; HET: MSE; 1.89A {Haemophilus influenzae} SCOP: c.1.10.1
Probab=56.21 E-value=22 Score=31.14 Aligned_cols=62 Identities=21% Similarity=0.302 Sum_probs=37.7
Q ss_pred hhcCCceeeccCcchHHHHHHHHHhhCCCCCEEeEecccccHHHHHHHhCCCCCHHHHHHHHHHHHHHcCCCEEEecch-
Q psy15126 211 VSQGADFLMVKPALPYLDIISEVKSRHPAYPLFVYQVSGEYAMLAFAAQAGALDLKRALMETLTCLRRGGADVIISYYT- 289 (300)
Q Consensus 211 a~~GADivmVkPsmm~ld~Ir~~~d~~~~vpi~aY~vSgeY~~~r~Aa~~~~~n~~eal~E~~~~~~r~GAD~Ii~y~A- 289 (300)
+++|||+| +.|. .-.++++.+++ + +.|++. |..+..| ..... +.|||.|.++|+
T Consensus 86 ~~aGAd~v-~~p~-~d~~v~~~ar~-~-g~~~i~----------------Gv~t~~e----~~~A~-~~Gad~vk~Fpa~ 140 (224)
T 1vhc_A 86 KSSGADFV-VTPG-LNPKIVKLCQD-L-NFPITP----------------GVNNPMA----IEIAL-EMGISAVKFFPAE 140 (224)
T ss_dssp HHHTCSEE-ECSS-CCHHHHHHHHH-T-TCCEEC----------------EECSHHH----HHHHH-HTTCCEEEETTTT
T ss_pred HHCCCCEE-EECC-CCHHHHHHHHH-h-CCCEEe----------------ccCCHHH----HHHHH-HCCCCEEEEeeCc
Confidence 68999999 6675 22344455554 3 455544 1234443 34455 689999999983
Q ss_pred ----HHHHHHHh
Q psy15126 290 ----PRVLEWLR 297 (300)
Q Consensus 290 ----~~~ld~l~ 297 (300)
+++++.++
T Consensus 141 ~~gG~~~lk~l~ 152 (224)
T 1vhc_A 141 ASGGVKMIKALL 152 (224)
T ss_dssp TTTHHHHHHHHH
T ss_pred cccCHHHHHHHH
Confidence 45555554
No 228
>1y0e_A Putative N-acetylmannosamine-6-phosphate 2-epimer; mannac-6-P epimerase, NANE, structural genomics, protein STR initiative, PSI; 1.95A {Staphylococcus aureus subsp} SCOP: c.1.2.5
Probab=55.98 E-value=87 Score=25.97 Aligned_cols=24 Identities=29% Similarity=0.581 Sum_probs=17.4
Q ss_pred CCChHHHHHHHHHHhCCCcEEEee
Q psy15126 14 PDNPLFQVIPMIRKQFPSLTIACD 37 (300)
Q Consensus 14 ~~~~~~~~i~~ik~~~p~l~i~~D 37 (300)
|+..+.+.++.+|+.+|++.++.+
T Consensus 102 p~~~~~~~i~~~~~~~~~~~v~~~ 125 (223)
T 1y0e_A 102 PKETLDELVSYIRTHAPNVEIMAD 125 (223)
T ss_dssp SSSCHHHHHHHHHHHCTTSEEEEE
T ss_pred cccCHHHHHHHHHHhCCCceEEec
Confidence 434567788888888888777654
No 229
>1k66_A Phytochrome response regulator RCPB; CHEY homologue, homodimer, APO-protein, (beta/alpha)5, signaling protein; 1.75A {Tolypothrix SP} SCOP: c.23.1.1
Probab=55.24 E-value=58 Score=23.70 Aligned_cols=57 Identities=12% Similarity=0.201 Sum_probs=38.6
Q ss_pred cCCceeeccCcc---hHHHHHHHHHhhC--CCCCEEeEecccccHHHHHHHhCCCCCHHHHHHHHHHHHHHcCCCEEEec
Q psy15126 213 QGADFLMVKPAL---PYLDIISEVKSRH--PAYPLFVYQVSGEYAMLAFAAQAGALDLKRALMETLTCLRRGGADVIISY 287 (300)
Q Consensus 213 ~GADivmVkPsm---m~ld~Ir~~~d~~--~~vpi~aY~vSgeY~~~r~Aa~~~~~n~~eal~E~~~~~~r~GAD~Ii~y 287 (300)
...|+|++--.| .-++.++++++.. +++||+..+.+.. . +. ....+ +.||+-.+.|
T Consensus 61 ~~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~~~ii~~t~~~~--------------~-~~---~~~~~-~~g~~~~l~k 121 (149)
T 1k66_A 61 PRPAVILLDLNLPGTDGREVLQEIKQDEVLKKIPVVIMTTSSN--------------P-KD---IEICY-SYSISSYIVK 121 (149)
T ss_dssp CCCSEEEECSCCSSSCHHHHHHHHTTSTTGGGSCEEEEESCCC--------------H-HH---HHHHH-HTTCSEEEEC
T ss_pred CCCcEEEEECCCCCCCHHHHHHHHHhCcccCCCeEEEEeCCCC--------------H-HH---HHHHH-HCCCCEEEeC
Confidence 456999887554 3688899988864 7899999865222 1 11 12233 6788888888
Q ss_pred c
Q psy15126 288 Y 288 (300)
Q Consensus 288 ~ 288 (300)
|
T Consensus 122 P 122 (149)
T 1k66_A 122 P 122 (149)
T ss_dssp C
T ss_pred C
Confidence 7
No 230
>1x1o_A Nicotinate-nucleotide pyrophosphorylase; transferase, structural genomics, NPPSFA, national project O structural and functional analyses; 1.90A {Thermus thermophilus}
Probab=55.14 E-value=30 Score=31.82 Aligned_cols=55 Identities=24% Similarity=0.333 Sum_probs=36.8
Q ss_pred hhcCCceeeccCcchHHHHHHHHHhhC-CCCCEEeEecccccHHHHHHHhCCCCCHHHHHHHHHHHHHHcCCCEEEec
Q psy15126 211 VSQGADFLMVKPALPYLDIISEVKSRH-PAYPLFVYQVSGEYAMLAFAAQAGALDLKRALMETLTCLRRGGADVIISY 287 (300)
Q Consensus 211 a~~GADivmVkPsmm~ld~Ir~~~d~~-~~vpi~aY~vSgeY~~~r~Aa~~~~~n~~eal~E~~~~~~r~GAD~Ii~y 287 (300)
+++|||+||+.| |+...+|++.+.. .++|+.+- |-+|. |.+..+.+.|+|.|-+-
T Consensus 213 ~~aGaD~I~ld~--~~~~~~k~av~~v~~~ipi~As---------------GGIt~-----eni~~~a~tGvD~IsVg 268 (286)
T 1x1o_A 213 LEAGADLILLDN--FPLEALREAVRRVGGRVPLEAS---------------GNMTL-----ERAKAAAEAGVDYVSVG 268 (286)
T ss_dssp HHHTCSEEEEES--CCHHHHHHHHHHHTTSSCEEEE---------------SSCCH-----HHHHHHHHHTCSEEECT
T ss_pred HHcCCCEEEECC--CCHHHHHHHHHHhCCCCeEEEE---------------cCCCH-----HHHHHHHHcCCCEEEEc
Confidence 578999999988 3444455555442 35888763 22564 44466778899999873
No 231
>2jbm_A Nicotinate-nucleotide pyrophosphorylase; NAD, enzyme, metabolism, transferase, polymorphism, glycosyltransferase, pyridine nucleotide biosynthesis; HET: SRT; 2.0A {Homo sapiens} PDB: 3lar_A
Probab=54.71 E-value=20 Score=33.02 Aligned_cols=58 Identities=22% Similarity=0.288 Sum_probs=38.1
Q ss_pred hhcCCceeeccCcch-HHHHHHHHHh-hCCCCCEEeEecccccHHHHHHHhCCCCCHHHHHHHHHHHHHHcCCCEEEecc
Q psy15126 211 VSQGADFLMVKPALP-YLDIISEVKS-RHPAYPLFVYQVSGEYAMLAFAAQAGALDLKRALMETLTCLRRGGADVIISYY 288 (300)
Q Consensus 211 a~~GADivmVkPsmm-~ld~Ir~~~d-~~~~vpi~aY~vSgeY~~~r~Aa~~~~~n~~eal~E~~~~~~r~GAD~Ii~y~ 288 (300)
+++|||+||+-+-.+ ++..+++.++ .+|++||.+= | -+|. |.+..+.++|||.|-|-.
T Consensus 214 ~~aGaD~I~ld~~~~~~l~~~v~~l~~~~~~~~I~AS---G------------GIt~-----~ni~~~~~aGaD~i~vGs 273 (299)
T 2jbm_A 214 AEAGADLVLLDNFKPEELHPTATVLKAQFPSVAVEAS---G------------GITL-----DNLPQFCGPHIDVISMGM 273 (299)
T ss_dssp HHTTCSEEEEESCCHHHHHHHHHHHHHHCTTSEEEEE---S------------SCCT-----TTHHHHCCTTCCEEECTH
T ss_pred HHcCCCEEEECCCCHHHHHHHHHHhhccCCCeeEEEE---C------------CCCH-----HHHHHHHHCCCCEEEECh
Confidence 478999999876422 5555444444 4888998764 3 1343 334466689999988744
No 232
>3ble_A Citramalate synthase from leptospira interrogans; TIM barrel, licmsn, substrate specificity, acyltransferase, amino-acid biosynthesis; 2.00A {Leptospira interrogans} PDB: 3blf_A 3bli_A*
Probab=54.44 E-value=31 Score=31.86 Aligned_cols=59 Identities=14% Similarity=0.019 Sum_probs=34.6
Q ss_pred CCCcEEEeeecCCCCCCCCcceeeCCCCceecHHhHHHHHHHHH-HHHHcCCCcccc-CCCC-c---chHHHHHHH
Q psy15126 29 FPSLTIACDVCLCGYTSHGHCAIFNEDGSIHYEKTLKRLADISK-AFSDAGAHIVAP-SDMM-D---NRIHAIKQS 98 (300)
Q Consensus 29 ~p~l~i~~Dvclc~yt~hGHcgi~~~~g~i~nd~Tl~~l~~~A~-~~A~aGad~vAP-SdmM-D---grv~air~a 98 (300)
.|+-+.+.|++|= ||.- ......|.+.-.+++. .+.++|++.|-- +..+ + .++..+++.
T Consensus 16 ~~~~v~I~DtTlR-------DG~Q----~~~~~~~~~~k~~i~~~~L~~~Gv~~IE~g~~~~~~~~~~~v~~~~~~ 80 (337)
T 3ble_A 16 VETRLEILDVTLR-------DGEQ----TRGVSFSTSEKLNIAKFLLQKLNVDRVEIASARVSKGELETVQKIMEW 80 (337)
T ss_dssp ---CCEEEECHHH-------HHTT----STTCCCCHHHHHHHHHHHHHTTCCSEEEEEETTSCTTHHHHHHHHHHH
T ss_pred CCCceEEEECCCC-------CCCC----CCCCCcCHHHHHHHHHHHHHHcCCCEEEEeCCCCChhHHHHHHHHHhh
Confidence 4555677888771 2211 1122367888888888 899999998765 3222 3 456666553
No 233
>3igs_A N-acetylmannosamine-6-phosphate 2-epimerase 2; energy metabolism, sugars, csgid, carbohydrate metabolism, isomerase; HET: MSE 16G; 1.50A {Salmonella enterica subsp} SCOP: c.1.2.0
Probab=54.29 E-value=28 Score=30.46 Aligned_cols=29 Identities=17% Similarity=0.171 Sum_probs=21.4
Q ss_pred hhcCCceeeccCcchHHHHHHHHHhhCCCCCEEe
Q psy15126 211 VSQGADFLMVKPALPYLDIISEVKSRHPAYPLFV 244 (300)
Q Consensus 211 a~~GADivmVkPsmm~ld~Ir~~~d~~~~vpi~a 244 (300)
.+.||..|-+ .-.+.|+++++.. ++||+.
T Consensus 46 ~~~Ga~~i~~----~~~~~i~~ir~~v-~~Pvig 74 (232)
T 3igs_A 46 EQAGAVAVRI----EGIDNLRMTRSLV-SVPIIG 74 (232)
T ss_dssp HHTTCSEEEE----ESHHHHHHHHTTC-CSCEEE
T ss_pred HHCCCeEEEE----CCHHHHHHHHHhc-CCCEEE
Confidence 6889998844 2356778888775 899875
No 234
>2vp8_A Dihydropteroate synthase 2; RV1207 transferase, folate biosynthesis, antibiotic resistance; 2.64A {Mycobacterium tuberculosis}
Probab=53.89 E-value=27 Score=32.75 Aligned_cols=73 Identities=22% Similarity=0.281 Sum_probs=46.0
Q ss_pred hhcCCceeecc-----Cc--------ch-HHHHHHHHHhhCCCCCEEeEecccccHHHHHHHhCC--CCC-----HHHHH
Q psy15126 211 VSQGADFLMVK-----PA--------LP-YLDIISEVKSRHPAYPLFVYQVSGEYAMLAFAAQAG--ALD-----LKRAL 269 (300)
Q Consensus 211 a~~GADivmVk-----Ps--------mm-~ld~Ir~~~d~~~~vpi~aY~vSgeY~~~r~Aa~~~--~~n-----~~eal 269 (300)
+++|||||=|. |+ +. .+-+|+.+++.++++||..= |-...-.++|.+.| .+| ..+.+
T Consensus 75 v~~GAdIIDIGgeSTrPG~~v~~~eEl~Rv~pvI~~l~~~~~~vpISID--T~~~~VaeaAl~aGa~iINDVsg~~d~~m 152 (318)
T 2vp8_A 75 VADGADVIDVGGVKAGPGERVDVDTEITRLVPFIEWLRGAYPDQLISVD--TWRAQVAKAACAAGADLINDTWGGVDPAM 152 (318)
T ss_dssp HHTTCSEEEEC----------CHHHHHHHHHHHHHHHHHHSTTCEEEEE--CSCHHHHHHHHHHTCCEEEETTSSSSTTH
T ss_pred HHCCCCEEEECCCcCCCCCCCCHHHHHHHHHHHHHHHHhhCCCCeEEEe--CCCHHHHHHHHHhCCCEEEECCCCCchHH
Confidence 89999999888 65 11 35667777777778888543 55666777777643 111 13445
Q ss_pred HHHHHHHHHcCCCEEEecc
Q psy15126 270 METLTCLRRGGADVIISYY 288 (300)
Q Consensus 270 ~E~~~~~~r~GAD~Ii~y~ 288 (300)
.+... +.|+-+|+...
T Consensus 153 ~~vaa---~~g~~vVlmh~ 168 (318)
T 2vp8_A 153 PEVAA---EFGAGLVCAHT 168 (318)
T ss_dssp HHHHH---HHTCEEEEECC
T ss_pred HHHHH---HhCCCEEEECC
Confidence 55544 45888887663
No 235
>1ka9_F Imidazole glycerol phosphtate synthase; riken structural genomics/proteomics initiative, RSGI, structural genomics, transferase; 2.30A {Thermus thermophilus} SCOP: c.1.2.1
Probab=53.71 E-value=33 Score=29.09 Aligned_cols=33 Identities=33% Similarity=0.378 Sum_probs=23.3
Q ss_pred hhcCCceeecc-Cc------chHHHHHHHHHhhCCCCCEEe
Q psy15126 211 VSQGADFLMVK-PA------LPYLDIISEVKSRHPAYPLFV 244 (300)
Q Consensus 211 a~~GADivmVk-Ps------mm~ld~Ir~~~d~~~~vpi~a 244 (300)
.++|||.|-|- |. ...++.++++++.+ ++|++.
T Consensus 41 ~~~Gad~i~v~d~~~~~~~~~~~~~~i~~i~~~~-~iPvi~ 80 (252)
T 1ka9_F 41 DEAGADELVFLDISATHEERAILLDVVARVAERV-FIPLTV 80 (252)
T ss_dssp HHHTCSCEEEEECCSSTTCHHHHHHHHHHHHTTC-CSCEEE
T ss_pred HHcCCCEEEEEcCCccccCccccHHHHHHHHHhC-CCCEEE
Confidence 46788876542 22 12678899998875 899987
No 236
>3exr_A RMPD (hexulose-6-phosphate synthase); beta barrel, lyase; 1.70A {Streptococcus mutans} SCOP: c.1.2.3 PDB: 3exs_A* 3ext_A
Probab=53.02 E-value=25 Score=30.53 Aligned_cols=61 Identities=15% Similarity=0.176 Sum_probs=41.9
Q ss_pred HHHHHHHHhCCCcEEEeeecCCCCCCCCcceeeCCCCceecHHhHHHHHHHHHHHHHcCCCccccCCCCc-chHHHHHHH
Q psy15126 20 QVIPMIRKQFPSLTIACDVCLCGYTSHGHCAIFNEDGSIHYEKTLKRLADISKAFSDAGAHIVAPSDMMD-NRIHAIKQS 98 (300)
Q Consensus 20 ~~i~~ik~~~p~l~i~~Dvclc~yt~hGHcgi~~~~g~i~nd~Tl~~l~~~A~~~A~aGad~vAPSdmMD-grv~air~a 98 (300)
..|+.||+.+|+..|+.|+-|. |.-.|+... ++++|+|++.-..... ..+.+.++.
T Consensus 47 ~~v~~l~~~~p~~~iflDlKl~-----------------Dip~t~~~~------~~~~Gad~vtVH~~~g~~~l~~a~~~ 103 (221)
T 3exr_A 47 ELVEVLRSLFPDKIIVADTKCA-----------------DAGGTVAKN------NAVRGADWMTCICSATIPTMKAARKA 103 (221)
T ss_dssp HHHHHHHHHCTTSEEEEEEEEC-----------------SCHHHHHHH------HHTTTCSEEEEETTSCHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCcEEEEEEee-----------------ccHHHHHHH------HHHcCCCEEEEeccCCHHHHHHHHHH
Confidence 5689999999998899998761 223344332 5889999977644433 347777777
Q ss_pred HhhCC
Q psy15126 99 LFTSR 103 (300)
Q Consensus 99 Ld~~g 103 (300)
+.+.|
T Consensus 104 ~~~~g 108 (221)
T 3exr_A 104 IEDIN 108 (221)
T ss_dssp HHHHC
T ss_pred HHhcC
Confidence 77655
No 237
>2oem_A 2,3-diketo-5-methylthiopentyl-1-phosphate enolase; rubisco-like protein, isomerase; HET: KCX 1AE; 1.70A {Geobacillus kaustophilus} PDB: 2oel_A* 2oek_A* 2oej_A
Probab=52.70 E-value=49 Score=32.21 Aligned_cols=71 Identities=20% Similarity=0.226 Sum_probs=39.7
Q ss_pred hhcCCceeeccCcchHHHHHHHHHhhC-CCCCEEeEecccccHHHHHHHhCCCCCHHHHHHHHHHHHHHcCCCEEEec
Q psy15126 211 VSQGADFLMVKPALPYLDIISEVKSRH-PAYPLFVYQVSGEYAMLAFAAQAGALDLKRALMETLTCLRRGGADVIISY 287 (300)
Q Consensus 211 a~~GADivmVkPsmm~ld~Ir~~~d~~-~~vpi~aY~vSgeY~~~r~Aa~~~~~n~~eal~E~~~~~~r~GAD~Ii~y 287 (300)
.+.|+.++||.+-.-=..+++.+...+ +++||..+-+ ..|.+-.-.+.|. +. .+++-.+..+ +|||.|.+-
T Consensus 229 ~e~G~~~~mvd~~~~G~~a~~~l~~~~~~~~~lh~HrA--~hg~~~r~~~~Gi-~~-~vll~Kl~Rl--~G~D~ih~g 300 (413)
T 2oem_A 229 AELGADVLLFNVFAYGLDVLQALREDEEIAVPIMAHPA--FSGAVTPSEFYGV-AP-SLWLGKLLRL--AGADFVLFP 300 (413)
T ss_dssp HHTTCSEEEECGGGSCHHHHHHHHHCTTTCCCEEECCT--TGGGTSSCSSSSB-CH-HHHTTHHHHH--HTCSEEEEE
T ss_pred HHhCCCeEEEeeeccChHHHHHHHhhccCCceEEeccc--cceeeccCCCCCc-ch-HHHHHHHHHH--cCCCeeecC
Confidence 578999999988643334444444332 6899999866 2222111112232 22 2332444445 799998863
No 238
>1k68_A Phytochrome response regulator RCPA; phosphorylated aspartate, CHEY homologue, homodimer, (beta/alpha)5, signaling protein; HET: PHD; 1.90A {Tolypothrix SP} SCOP: c.23.1.1
Probab=52.40 E-value=62 Score=23.18 Aligned_cols=58 Identities=16% Similarity=0.191 Sum_probs=38.9
Q ss_pred cCCceeeccCcc---hHHHHHHHHHhhC--CCCCEEeEecccccHHHHHHHhCCCCCHHHHHHHHHHHHHHcCCCEEEec
Q psy15126 213 QGADFLMVKPAL---PYLDIISEVKSRH--PAYPLFVYQVSGEYAMLAFAAQAGALDLKRALMETLTCLRRGGADVIISY 287 (300)
Q Consensus 213 ~GADivmVkPsm---m~ld~Ir~~~d~~--~~vpi~aY~vSgeY~~~r~Aa~~~~~n~~eal~E~~~~~~r~GAD~Ii~y 287 (300)
.-.|+|++--.| .-++.++++++.. +++||+.++.+.. . +. ....+ +.||+-++.|
T Consensus 54 ~~~dlvi~d~~~~~~~g~~~~~~l~~~~~~~~~pii~ls~~~~--------------~-~~---~~~~~-~~g~~~~l~k 114 (140)
T 1k68_A 54 SRPDLILLXLNLPKKDGREVLAEIKSDPTLKRIPVVVLSTSIN--------------E-DD---IFHSY-DLHVNCYITK 114 (140)
T ss_dssp CCCSEEEECSSCSSSCHHHHHHHHHHSTTGGGSCEEEEESCCC--------------H-HH---HHHHH-HTTCSEEEEC
T ss_pred CCCcEEEEecCCCcccHHHHHHHHHcCcccccccEEEEecCCc--------------H-HH---HHHHH-HhchhheecC
Confidence 357898887554 3688899888864 7899999965221 1 11 11233 6799888888
Q ss_pred ch
Q psy15126 288 YT 289 (300)
Q Consensus 288 ~A 289 (300)
|.
T Consensus 115 P~ 116 (140)
T 1k68_A 115 SA 116 (140)
T ss_dssp CS
T ss_pred CC
Confidence 83
No 239
>1tqx_A D-ribulose-5-phosphate 3-epimerase, putative; structural genomics, protein structure initiative, PSI; 2.00A {Plasmodium falciparum} SCOP: c.1.2.2
Probab=52.35 E-value=65 Score=28.32 Aligned_cols=89 Identities=15% Similarity=0.138 Sum_probs=54.7
Q ss_pred hHHHHHH---HHHhhhcccccCCC-CCccccchhhhc--CCcee---eccCc---ch----HHHHHHHHHhhCCCCCEEe
Q psy15126 181 TLKRLAD---ISKAFSDAVYVPNH-NTDRFQARDVSQ--GADFL---MVKPA---LP----YLDIISEVKSRHPAYPLFV 244 (300)
Q Consensus 181 tl~~l~~---~a~~~a~~~~~~~~-n~~~~~~~Da~~--GADiv---mVkPs---mm----~ld~Ir~~~d~~~~vpi~a 244 (300)
++++..+ ....+-.-+.+.+| .|.--....+.. ++|+| -|-|+ .. .++.||++++..++++|.+
T Consensus 99 ~~~~~i~~~~~i~~~G~k~gvalnp~tp~~~~~~~l~~g~~D~VlvmsV~pGf~gq~f~~~~l~ki~~lr~~~~~~~I~V 178 (227)
T 1tqx_A 99 DTERCIQLAKEIRDNNLWCGISIKPKTDVQKLVPILDTNLINTVLVMTVEPGFGGQSFMHDMMGKVSFLRKKYKNLNIQV 178 (227)
T ss_dssp CHHHHHHHHHHHHTTTCEEEEEECTTSCGGGGHHHHTTTCCSEEEEESSCTTCSSCCCCGGGHHHHHHHHHHCTTCEEEE
T ss_pred CHHHHHHHHHHHHHcCCeEEEEeCCCCcHHHHHHHhhcCCcCEEEEeeeccCCCCcccchHHHHHHHHHHHhccCCeEEE
Confidence 4556666 65555555566653 343223334445 59999 78885 11 5888999888765666643
Q ss_pred EecccccHHHHHHHhCCCCCHHHHHHHHHHHHHHcCCCEEEecch
Q psy15126 245 YQVSGEYAMLAFAAQAGALDLKRALMETLTCLRRGGADVIISYYT 289 (300)
Q Consensus 245 Y~vSgeY~~~r~Aa~~~~~n~~eal~E~~~~~~r~GAD~Ii~y~A 289 (300)
= |-+|.+ ....+.++|||++++--+
T Consensus 179 d---------------GGI~~~-----ti~~~~~aGAd~~V~Gsa 203 (227)
T 1tqx_A 179 D---------------GGLNIE-----TTEISASHGANIIVAGTS 203 (227)
T ss_dssp E---------------SSCCHH-----HHHHHHHHTCCEEEESHH
T ss_pred E---------------CCCCHH-----HHHHHHHcCCCEEEEeHH
Confidence 2 335653 455566799999987544
No 240
>3q58_A N-acetylmannosamine-6-phosphate 2-epimerase; TIM beta/alpha barrel, ribulose-phosphate binding barrel, carbohydrate metabolic process; HET: BTB; 1.80A {Salmonella enterica subsp}
Probab=52.19 E-value=33 Score=30.06 Aligned_cols=29 Identities=17% Similarity=0.267 Sum_probs=21.7
Q ss_pred hhcCCceeeccCcchHHHHHHHHHhhCCCCCEEe
Q psy15126 211 VSQGADFLMVKPALPYLDIISEVKSRHPAYPLFV 244 (300)
Q Consensus 211 a~~GADivmVkPsmm~ld~Ir~~~d~~~~vpi~a 244 (300)
.+.||..|-+ .-.+.|+++++.. ++||+.
T Consensus 46 ~~~Ga~~i~~----~~~~~i~~ir~~v-~~Pvig 74 (229)
T 3q58_A 46 ASAGAVAVRI----EGIENLRTVRPHL-SVPIIG 74 (229)
T ss_dssp HHTTCSEEEE----ESHHHHHHHGGGC-CSCEEE
T ss_pred HHCCCcEEEE----CCHHHHHHHHHhc-CCCEEE
Confidence 6899999844 2456788888875 899874
No 241
>1zfj_A Inosine monophosphate dehydrogenase; IMPDH, CBS domains, oxidoreductase; HET: IMP; 1.90A {Streptococcus pyogenes} SCOP: c.1.5.1 d.37.1.1
Probab=52.13 E-value=58 Score=30.84 Aligned_cols=57 Identities=25% Similarity=0.348 Sum_probs=39.2
Q ss_pred hhcCCceeeccCcc----hHHHHHHHHHhhCCCCCEEeEecccccHHHHHHHhCCCCCHHHHHHHHHHHHHHcCCCEEEe
Q psy15126 211 VSQGADFLMVKPAL----PYLDIISEVKSRHPAYPLFVYQVSGEYAMLAFAAQAGALDLKRALMETLTCLRRGGADVIIS 286 (300)
Q Consensus 211 a~~GADivmVkPsm----m~ld~Ir~~~d~~~~vpi~aY~vSgeY~~~r~Aa~~~~~n~~eal~E~~~~~~r~GAD~Ii~ 286 (300)
+++|+|.|.+.-+. ..++.++++++.+|++|+++=.+.. . |....+.++|||.|.+
T Consensus 242 ~~~G~d~ivi~~a~g~~~~~~~~i~~l~~~~p~~pvi~G~v~t---------------~-----~~a~~~~~~Gad~I~v 301 (491)
T 1zfj_A 242 FEAGADAIVIDTAHGHSAGVLRKIAEIRAHFPNRTLIAGNIAT---------------A-----EGARALYDAGVDVVKV 301 (491)
T ss_dssp HHHTCSEEEECCSCTTCHHHHHHHHHHHHHCSSSCEEEEEECS---------------H-----HHHHHHHHTTCSEEEE
T ss_pred HHcCCCeEEEeeecCcchhHHHHHHHHHHHCCCCcEeCCCccC---------------H-----HHHHHHHHcCCCEEEE
Confidence 57899999876431 2578899999888899998544411 1 3333444789999866
Q ss_pred c
Q psy15126 287 Y 287 (300)
Q Consensus 287 y 287 (300)
-
T Consensus 302 g 302 (491)
T 1zfj_A 302 G 302 (491)
T ss_dssp C
T ss_pred C
Confidence 3
No 242
>3qvq_A Phosphodiesterase OLEI02445; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, alpha-beta hydrolase, hydrolase; HET: MSE G3P; 1.60A {Oleispira antarctica}
Probab=51.38 E-value=60 Score=28.07 Aligned_cols=96 Identities=14% Similarity=0.140 Sum_probs=56.8
Q ss_pred chHhHHHHHHHHHhhhcccccCCCCCccccchhhhcCCceeeccCc--chHHHHHHHHHhhCCCCCEEeEecccccHHHH
Q psy15126 178 YEKTLKRLADISKAFSDAVYVPNHNTDRFQARDVSQGADFLMVKPA--LPYLDIISEVKSRHPAYPLFVYQVSGEYAMLA 255 (300)
Q Consensus 178 nd~tl~~l~~~a~~~a~~~~~~~~n~~~~~~~Da~~GADivmVkPs--mm~ld~Ir~~~d~~~~vpi~aY~vSgeY~~~r 255 (300)
+..+|+++.+..-.. ...|+-.....++...-.+.|++.+ .|. ...-..|+++++. +.+|.+|.|
T Consensus 152 ~~~~l~~~~~~~p~~-~~~~l~~~~~~~~~~~~~~~~~~~i--~~~~~~~~~~~v~~~~~~--G~~v~~WTv-------- 218 (252)
T 3qvq_A 152 NYFALVSAKALWPEI-ARGYNVSAIPSAWQERLEHLDCAGL--HIHQSFFDVQQVSDIKAA--GYKVLAFTI-------- 218 (252)
T ss_dssp CHHHHHHHHHHCTTS-CEEEECSSCCTTHHHHHHHHTCSEE--EEEGGGCCHHHHHHHHHT--TCEEEEECC--------
T ss_pred CHHHHHHHHHHCCCC-cEEEEEecCchhHHHHHHHcCCeEE--ecchhhCCHHHHHHHHHC--CCEEEEEcC--------
Confidence 456676666553221 1222222222223222235688887 554 3344667777765 689999976
Q ss_pred HHHhCCCCCHHHHHHHHHHHHHHcCCCEEEecchHHHHHHHhh
Q psy15126 256 FAAQAGALDLKRALMETLTCLRRGGADVIISYYTPRVLEWLRE 298 (300)
Q Consensus 256 ~Aa~~~~~n~~eal~E~~~~~~r~GAD~Ii~y~A~~~ld~l~~ 298 (300)
|..+. +..+.+.|+|.|||-+-..+.++|++
T Consensus 219 --------n~~~~----~~~l~~~GVdgIiTD~P~~~~~~l~~ 249 (252)
T 3qvq_A 219 --------NDESL----ALKLYNQGLDAVFSDYPQKIQSAIDS 249 (252)
T ss_dssp --------CCHHH----HHHHHHTTCCEEEESSHHHHHHHHHH
T ss_pred --------CCHHH----HHHHHHcCCCEEEeCCHHHHHHHHHH
Confidence 44332 33344679999999998888888764
No 243
>1w8s_A FBP aldolase, fructose-bisphosphate aldolase class I; TIM barrel, glycolytic, archaeal, catalytic mechanism, reaction intermediate, lyase; HET: FBP; 1.85A {Thermoproteus tenax} SCOP: c.1.10.1 PDB: 1w8r_A* 2yce_A* 1ojx_A 1ok4_A 1ok6_A
Probab=51.31 E-value=56 Score=29.00 Aligned_cols=60 Identities=18% Similarity=0.133 Sum_probs=35.8
Q ss_pred hhcCCceeeccCcch-HHHHHHHHHhhCCCCCEEeEecccccHHHHHHHhCCCC--CHHHHHHHHHHHHHHcCCCEEEec
Q psy15126 211 VSQGADFLMVKPALP-YLDIISEVKSRHPAYPLFVYQVSGEYAMLAFAAQAGAL--DLKRALMETLTCLRRGGADVIISY 287 (300)
Q Consensus 211 a~~GADivmVkPsmm-~ld~Ir~~~d~~~~vpi~aY~vSgeY~~~r~Aa~~~~~--n~~eal~E~~~~~~r~GAD~Ii~y 287 (300)
.+.|||+| |=+.+ -++.+|++++..+.+||.+= | |.. +.+++ +|.+....++||+-+.+-
T Consensus 169 ~~~GAD~v--kt~~~~~~e~~~~~~~~~~~~pV~as---G-----------Gi~~~~~~~~-l~~i~~~~~aGA~Gvsvg 231 (263)
T 1w8s_A 169 LELGADAM--KIKYTGDPKTFSWAVKVAGKVPVLMS---G-----------GPKTKTEEDF-LKQVEGVLEAGALGIAVG 231 (263)
T ss_dssp HHHTCSEE--EEECCSSHHHHHHHHHHTTTSCEEEE---C-----------CSCCSSHHHH-HHHHHHHHHTTCCEEEES
T ss_pred HHcCCCEE--EEcCCCCHHHHHHHHHhCCCCeEEEE---e-----------CCCCCCHHHH-HHHHHHHHHcCCeEEEEe
Confidence 57899999 55533 56778888776544587653 2 222 34444 334444446788766553
No 244
>1bwv_A Rubisco, protein (ribulose bisphosphate carboxylase); carbon dioxide fixation, complex (rubisco-reaction intermedi high specificity factor; HET: KCX CAP; 2.40A {Galdieria partita} SCOP: c.1.14.1 d.58.9.1 PDB: 1iwa_A 1bxn_A
Probab=50.97 E-value=40 Score=33.66 Aligned_cols=41 Identities=12% Similarity=0.030 Sum_probs=29.7
Q ss_pred HHhHHHHHHHHHHHHHcCCCccc--------cCCCCcchHHHHHHHHhh
Q psy15126 61 EKTLKRLADISKAFSDAGAHIVA--------PSDMMDNRIHAIKQSLFT 101 (300)
Q Consensus 61 d~Tl~~l~~~A~~~A~aGad~vA--------PSdmMDgrv~air~aLd~ 101 (300)
-.|.+.+++++.+++..|.|.|= |-.-+.-|+....++++.
T Consensus 188 GLsp~~~a~~~ye~~~GGlDfiKDDE~l~~qpf~p~~eR~~~v~eai~r 236 (493)
T 1bwv_A 188 GLSGKNYGRVVYEALKGGLDFVKDDENINSQPFMRWRERYLFTMEAVNK 236 (493)
T ss_dssp CCCHHHHHHHHHHHHHHTCSEEECCTTCSSBTTBCHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHhcCCCcccCccccCCCCCCcHHHHHHHHHHHHHH
Confidence 36889999999999999999872 233445666555555554
No 245
>2y88_A Phosphoribosyl isomerase A; aromatic amino acid biosynthesis, TIM-barrel, His biosynthesis, tryptophan biosynthesis; HET: 2ER; 1.33A {Mycobacterium tuberculosis} PDB: 2y89_A 2y85_A*
Probab=50.85 E-value=63 Score=27.15 Aligned_cols=33 Identities=12% Similarity=0.230 Sum_probs=23.7
Q ss_pred hhcCCceeecc-------CcchHHHHHHHHHhhCCCCCEEeE
Q psy15126 211 VSQGADFLMVK-------PALPYLDIISEVKSRHPAYPLFVY 245 (300)
Q Consensus 211 a~~GADivmVk-------Psmm~ld~Ir~~~d~~~~vpi~aY 245 (300)
.++|||.|-|- |.... +.|+++++.+ ++|+..-
T Consensus 41 ~~~Gad~i~v~~~d~~~~~~~~~-~~i~~i~~~~-~ipv~v~ 80 (244)
T 2y88_A 41 QRDGAEWIHLVDLDAAFGRGSNH-ELLAEVVGKL-DVQVELS 80 (244)
T ss_dssp HHTTCSEEEEEEHHHHTTSCCCH-HHHHHHHHHC-SSEEEEE
T ss_pred HHcCCCEEEEEcCcccccCCChH-HHHHHHHHhc-CCcEEEE
Confidence 46788888662 33335 8899998876 7998874
No 246
>3jr2_A Hexulose-6-phosphate synthase SGBH; 3-keto-L-gulonate-6-phosphate decarboxylase, ULAD, niaid,CSG bound, biosynthetic protein; HET: MSE; 1.80A {Vibrio cholerae} SCOP: c.1.2.0 PDB: 3ieb_A*
Probab=50.65 E-value=25 Score=29.82 Aligned_cols=62 Identities=21% Similarity=0.299 Sum_probs=39.8
Q ss_pred HHHHHHHHhCCCcEEEeeecCCCCCCCCcceeeCCCCceecHHhHHHHHHHHHHHHHcCCCccccCCCCcc-hHHHHHHH
Q psy15126 20 QVIPMIRKQFPSLTIACDVCLCGYTSHGHCAIFNEDGSIHYEKTLKRLADISKAFSDAGAHIVAPSDMMDN-RIHAIKQS 98 (300)
Q Consensus 20 ~~i~~ik~~~p~l~i~~Dvclc~yt~hGHcgi~~~~g~i~nd~Tl~~l~~~A~~~A~aGad~vAPSdmMDg-rv~air~a 98 (300)
+.|+.||+.+|+.-|+.|+-+. + .+ + + .+..++++|+|+|.--+.-.. .+....+.
T Consensus 48 ~~i~~lr~~~~~~~i~ld~~l~-----------d-~p---~--~------~~~~~~~aGad~i~vh~~~~~~~~~~~~~~ 104 (218)
T 3jr2_A 48 KAVSTLRHNHPNHILVCDMKTT-----------D-GG---A--I------LSRMAFEAGADWITVSAAAHIATIAACKKV 104 (218)
T ss_dssp HHHHHHHHHCTTSEEEEEEEEC-----------S-CH---H--H------HHHHHHHHTCSEEEEETTSCHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCcEEEEEeec-----------c-cH---H--H------HHHHHHhcCCCEEEEecCCCHHHHHHHHHH
Confidence 6799999999998888887442 1 11 1 1 335667888888876544432 34566666
Q ss_pred HhhCCC
Q psy15126 99 LFTSRQ 104 (300)
Q Consensus 99 Ld~~g~ 104 (300)
+.+.|.
T Consensus 105 ~~~~g~ 110 (218)
T 3jr2_A 105 ADELNG 110 (218)
T ss_dssp HHHHTC
T ss_pred HHHhCC
Confidence 666665
No 247
>2a9o_A Response regulator; essential protein, YYCF/YYCG homolog, signaling protein; 1.65A {Streptococcus pneumoniae} SCOP: c.23.1.1 PDB: 1nxo_A 1nxs_A 1nxv_A 1nxw_A 1nxx_A 1nxp_A 2a9p_A 2a9q_A 1nxt_A* 2a9r_A*
Probab=50.63 E-value=62 Score=22.67 Aligned_cols=58 Identities=16% Similarity=0.312 Sum_probs=36.7
Q ss_pred hcCCceeeccCcch---HHHHHHHHHhhCCCCCEEeEecccccHHHHHHHhCCCCCHHHHHHHHHHHHHHcCCCEEEecc
Q psy15126 212 SQGADFLMVKPALP---YLDIISEVKSRHPAYPLFVYQVSGEYAMLAFAAQAGALDLKRALMETLTCLRRGGADVIISYY 288 (300)
Q Consensus 212 ~~GADivmVkPsmm---~ld~Ir~~~d~~~~vpi~aY~vSgeY~~~r~Aa~~~~~n~~eal~E~~~~~~r~GAD~Ii~y~ 288 (300)
+...|+|++--.|+ -++.++++++. +++||+..+.+.... +....+ +.||+-.+.||
T Consensus 43 ~~~~dlvl~D~~l~~~~g~~~~~~l~~~-~~~~ii~~s~~~~~~------------------~~~~~~-~~g~~~~l~Kp 102 (120)
T 2a9o_A 43 AEQPDIIILDLMLPEIDGLEVAKTIRKT-SSVPILMLSAKDSEF------------------DKVIGL-ELGADDYVTKP 102 (120)
T ss_dssp HHCCSEEEECSSCSSSCHHHHHHHHHHH-CCCCEEEEESCCSHH------------------HHHHHH-HHTCSEEEESS
T ss_pred hCCCCEEEEeccCCCCCHHHHHHHHHhC-CCCCEEEEecCCchH------------------HHHHHH-hCCHhheEeCC
Confidence 34578888775543 56777777764 689999886422211 112233 57888888887
Q ss_pred h
Q psy15126 289 T 289 (300)
Q Consensus 289 A 289 (300)
-
T Consensus 103 ~ 103 (120)
T 2a9o_A 103 F 103 (120)
T ss_dssp C
T ss_pred C
Confidence 3
No 248
>3c3w_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 2.20A {Mycobacterium tuberculosis}
Probab=50.35 E-value=23 Score=29.12 Aligned_cols=52 Identities=19% Similarity=0.239 Sum_probs=37.5
Q ss_pred hcCCceeeccCcch---HHHHHHHHHhhCCCCCEEeEecccccHHHHHHHhCCCC
Q psy15126 212 SQGADFLMVKPALP---YLDIISEVKSRHPAYPLFVYQVSGEYAMLAFAAQAGAL 263 (300)
Q Consensus 212 ~~GADivmVkPsmm---~ld~Ir~~~d~~~~vpi~aY~vSgeY~~~r~Aa~~~~~ 263 (300)
+...|+|++--.|+ -++.++++++.+|++||+..+....-.....+.+.|..
T Consensus 45 ~~~~dlvllD~~lp~~~g~~~~~~lr~~~~~~~ii~lt~~~~~~~~~~~~~~Ga~ 99 (225)
T 3c3w_A 45 AARPDVAVLDVRLPDGNGIELCRDLLSRMPDLRCLILTSYTSDEAMLDAILAGAS 99 (225)
T ss_dssp HHCCSEEEECSEETTEEHHHHHHHHHHHCTTCEEEEGGGSSSHHHHHHHHHHTCC
T ss_pred hcCCCEEEEeCCCCCCCHHHHHHHHHHhCCCCcEEEEECCCCHHHHHHHHHCCCC
Confidence 34579998875544 68899999988899999999765555555666555543
No 249
>2c6q_A GMP reductase 2; TIM barrel, metal-binding, NADP, oxidoreductase, potassium; HET: IMP NDP; 1.70A {Homo sapiens} PDB: 2bzn_A* 2a7r_A* 2ble_A* 2bwg_A*
Probab=50.35 E-value=61 Score=30.12 Aligned_cols=54 Identities=15% Similarity=0.308 Sum_probs=35.9
Q ss_pred CCceeecc--C--cchHHHHHHHHHhhCCCCCEEeEecccccHHHHHHHhCCCCCHHHHHHHHHHHHHHcCCCEEEec
Q psy15126 214 GADFLMVK--P--ALPYLDIISEVKSRHPAYPLFVYQVSGEYAMLAFAAQAGALDLKRALMETLTCLRRGGADVIISY 287 (300)
Q Consensus 214 GADivmVk--P--smm~ld~Ir~~~d~~~~vpi~aY~vSgeY~~~r~Aa~~~~~n~~eal~E~~~~~~r~GAD~Ii~y 287 (300)
|+|+|-+- . +...++.|+++++.++++||++=.+ .+.++| ...+ ++|||.|.+-
T Consensus 132 g~~~i~i~~~~g~~~~~~~~i~~lr~~~~~~~vi~g~v---------------~t~e~A----~~a~-~aGaD~I~v~ 189 (351)
T 2c6q_A 132 QVKYICLDVANGYSEHFVEFVKDVRKRFPQHTIMAGNV---------------VTGEMV----EELI-LSGADIIKVG 189 (351)
T ss_dssp TCCEEEEECSCTTBHHHHHHHHHHHHHCTTSEEEEEEE---------------CSHHHH----HHHH-HTTCSEEEEC
T ss_pred CCCEEEEEecCCCcHHHHHHHHHHHHhcCCCeEEEEeC---------------CCHHHH----HHHH-HhCCCEEEEC
Confidence 88887542 1 1236889999999888899986544 233322 3334 7999999663
No 250
>3bg3_A Pyruvate carboxylase, mitochondrial; TIM barrel, ATP-binding, biotin, disease mutation, gluconeogenesis, ligase, lipid synthesis, manganese; HET: KCX BTI; 2.80A {Homo sapiens} PDB: 3bg9_A
Probab=50.04 E-value=29 Score=35.92 Aligned_cols=47 Identities=23% Similarity=0.494 Sum_probs=33.1
Q ss_pred hHHHHHHHHHhhhcccccCCCCCccccchhhhcCCceeeccCc----ch--HHHHHHHHHhhCCCCCEEeE
Q psy15126 181 TLKRLADISKAFSDAVYVPNHNTDRFQARDVSQGADFLMVKPA----LP--YLDIISEVKSRHPAYPLFVY 245 (300)
Q Consensus 181 tl~~l~~~a~~~a~~~~~~~~n~~~~~~~Da~~GADivmVkPs----mm--~ld~Ir~~~d~~~~vpi~aY 245 (300)
+++.+.+++... .++|||.|-++=. .| .-+.|+.+++++|++||-.+
T Consensus 259 ~~e~~~~~a~~l------------------~~~Ga~~I~l~DT~G~~~P~~v~~lV~~lk~~~p~~~I~~H 311 (718)
T 3bg3_A 259 SLQYYMGLAEEL------------------VRAGTHILCIKDMAGLLKPTACTMLVSSLRDRFPDLPLHIH 311 (718)
T ss_dssp CHHHHHHHHHHH------------------HHHTCSEEEEECTTSCCCHHHHHHHHHHHHHHSTTCCEEEE
T ss_pred CHHHHHHHHHHH------------------HHcCCCEEEEcCcCCCcCHHHHHHHHHHHHHhCCCCeEEEE
Confidence 466677776665 6889999966543 22 56788888888888887544
No 251
>1a04_A Nitrate/nitrite response regulator protein NARL; signal transduction protein, response regulators, two- component systems; 2.20A {Escherichia coli} SCOP: a.4.6.2 c.23.1.1 PDB: 1rnl_A
Probab=49.75 E-value=34 Score=27.42 Aligned_cols=50 Identities=18% Similarity=0.347 Sum_probs=35.1
Q ss_pred hcCCceeeccCcch---HHHHHHHHHhhCCCCCEEeEecccccHHHHHHHhCC
Q psy15126 212 SQGADFLMVKPALP---YLDIISEVKSRHPAYPLFVYQVSGEYAMLAFAAQAG 261 (300)
Q Consensus 212 ~~GADivmVkPsmm---~ld~Ir~~~d~~~~vpi~aY~vSgeY~~~r~Aa~~~ 261 (300)
+...|+|++--.|+ -++.++++++.++++||+..+.+..-.....+.+.|
T Consensus 49 ~~~~dlvllD~~lp~~~g~~~~~~lr~~~~~~~ii~ls~~~~~~~~~~~~~~G 101 (215)
T 1a04_A 49 SLDPDLILLDLNMPGMNGLETLDKLREKSLSGRIVVFSVSNHEEDVVTALKRG 101 (215)
T ss_dssp HHCCSEEEEETTSTTSCHHHHHHHHHHSCCCSEEEEEECCCCHHHHHHHHHTT
T ss_pred hcCCCEEEEeCCCCCCcHHHHHHHHHHhCCCCcEEEEECCCCHHHHHHHHHcC
Confidence 34578888765544 688999999888899999997755444444444443
No 252
>1geq_A Tryptophan synthase alpha-subunit; hyperthermophIle, pyrococ furiosus, X-RAY analysis, stability, calorimetry, lyase; 2.00A {Pyrococcus furiosus} SCOP: c.1.2.4 PDB: 1wdw_A* 2dzu_A 2dzp_A 2e09_A 2dzw_A 2dzs_A 2dzv_A 2dzt_A 2dzx_A
Probab=49.65 E-value=70 Score=27.07 Aligned_cols=35 Identities=6% Similarity=-0.072 Sum_probs=21.1
Q ss_pred HHHHHHHcCCCccccCCCCcchHHHHHHHHhhCCC
Q psy15126 70 ISKAFSDAGAHIVAPSDMMDNRIHAIKQSLFTSRQ 104 (300)
Q Consensus 70 ~A~~~A~aGad~vAPSdmMDgrv~air~aLd~~g~ 104 (300)
.+..+.++|+|.|...++.........+.+.+.|.
T Consensus 100 ~~~~~~~~Gad~v~~~~~~~~~~~~~~~~~~~~g~ 134 (248)
T 1geq_A 100 FLAEAKASGVDGILVVDLPVFHAKEFTEIAREEGI 134 (248)
T ss_dssp HHHHHHHHTCCEEEETTCCGGGHHHHHHHHHHHTC
T ss_pred HHHHHHHCCCCEEEECCCChhhHHHHHHHHHHhCC
Confidence 44455667777777655555555555566655555
No 253
>1wbh_A KHG/KDPG aldolase; lyase; 1.55A {Escherichia coli} SCOP: c.1.10.1 PDB: 2c0a_A 1wau_A 1eua_A 1eun_A 1fq0_A* 1fwr_A*
Probab=49.39 E-value=29 Score=30.08 Aligned_cols=62 Identities=15% Similarity=0.243 Sum_probs=37.4
Q ss_pred hhcCCceeeccCcchHHHHHHHHHhhCCCCCEEeEecccccHHHHHHHhCCCCCHHHHHHHHHHHHHHcCCCEEEecch-
Q psy15126 211 VSQGADFLMVKPALPYLDIISEVKSRHPAYPLFVYQVSGEYAMLAFAAQAGALDLKRALMETLTCLRRGGADVIISYYT- 289 (300)
Q Consensus 211 a~~GADivmVkPsmm~ld~Ir~~~d~~~~vpi~aY~vSgeY~~~r~Aa~~~~~n~~eal~E~~~~~~r~GAD~Ii~y~A- 289 (300)
+++|||+| +.|. .-.++++..+. + ++|++. .+ .+.. |..... +.|||.|.++|+
T Consensus 85 ~~aGAd~v-~~p~-~d~~v~~~~~~-~-g~~~i~-G~---------------~t~~----e~~~A~-~~Gad~v~~Fpa~ 139 (214)
T 1wbh_A 85 TEAGAQFA-ISPG-LTEPLLKAATE-G-TIPLIP-GI---------------STVS----ELMLGM-DYGLKEFKFFPAE 139 (214)
T ss_dssp HHHTCSCE-EESS-CCHHHHHHHHH-S-SSCEEE-EE---------------SSHH----HHHHHH-HTTCCEEEETTTT
T ss_pred HHcCCCEE-EcCC-CCHHHHHHHHH-h-CCCEEE-ec---------------CCHH----HHHHHH-HCCCCEEEEecCc
Confidence 68999999 4665 23344444444 3 456553 12 2443 444455 689999999984
Q ss_pred ----HHHHHHHh
Q psy15126 290 ----PRVLEWLR 297 (300)
Q Consensus 290 ----~~~ld~l~ 297 (300)
+++++.++
T Consensus 140 ~~gG~~~lk~i~ 151 (214)
T 1wbh_A 140 ANGGVKALQAIA 151 (214)
T ss_dssp TTTHHHHHHHHH
T ss_pred cccCHHHHHHHh
Confidence 55666554
No 254
>1qwg_A PSL synthase;, (2R)-phospho-3-sulfolactate synthase; beta-alpha-barrel, lyase; 1.60A {Methanocaldococcus jannaschii} SCOP: c.1.27.1
Probab=49.16 E-value=23 Score=32.51 Aligned_cols=77 Identities=17% Similarity=0.121 Sum_probs=51.3
Q ss_pred CCccccchhhhcCCceeeccCc---ch---HHHHHHHHHhh-CCCCCEEeEecccccHHHHHHHhCCCCCHHHHHHHHHH
Q psy15126 202 NTDRFQARDVSQGADFLMVKPA---LP---YLDIISEVKSR-HPAYPLFVYQVSGEYAMLAFAAQAGALDLKRALMETLT 274 (300)
Q Consensus 202 n~~~~~~~Da~~GADivmVkPs---mm---~ld~Ir~~~d~-~~~vpi~aY~vSgeY~~~r~Aa~~~~~n~~eal~E~~~ 274 (300)
..++++..=-+-|-|.|=|.=+ ++ ++..||++++. |. + +.= .|.+-+ ...+..+..+.+.....
T Consensus 86 ~~~~yl~~~k~lGf~~iEiS~G~i~l~~~~~~~~I~~~~~~G~~-v-~~E---vG~k~~----~~~~~~~~~~~I~~~~~ 156 (251)
T 1qwg_A 86 KFDEFLNECEKLGFEAVEISDGSSDISLEERNNAIKRAKDNGFM-V-LTE---VGKKMP----DKDKQLTIDDRIKLINF 156 (251)
T ss_dssp CHHHHHHHHHHHTCCEEEECCSSSCCCHHHHHHHHHHHHHTTCE-E-EEE---ECCSSH----HHHTTCCHHHHHHHHHH
T ss_pred cHHHHHHHHHHcCCCEEEECCCcccCCHHHHHHHHHHHHHCCCE-E-eee---ccccCC----cccCCCCHHHHHHHHHH
Confidence 4455555555678888744433 22 79999999988 52 1 111 243333 22256788999999999
Q ss_pred HHHHcCCCEEEecc
Q psy15126 275 CLRRGGADVIISYY 288 (300)
Q Consensus 275 ~~~r~GAD~Ii~y~ 288 (300)
++ ++||++||+-.
T Consensus 157 ~L-eAGA~~ViiEa 169 (251)
T 1qwg_A 157 DL-DAGADYVIIEG 169 (251)
T ss_dssp HH-HHTCSEEEECC
T ss_pred HH-HCCCcEEEEee
Confidence 99 79999999865
No 255
>1ys7_A Transcriptional regulatory protein PRRA; response regulator, DNA binding domain, phosphorylation; 1.58A {Mycobacterium tuberculosis} SCOP: a.4.6.1 c.23.1.1 PDB: 1ys6_A
Probab=48.97 E-value=33 Score=27.64 Aligned_cols=48 Identities=8% Similarity=0.208 Sum_probs=33.3
Q ss_pred hcCCceeeccCcch---HHHHHHHHHhhCCCCCEEeEecccccHHHHHHHh
Q psy15126 212 SQGADFLMVKPALP---YLDIISEVKSRHPAYPLFVYQVSGEYAMLAFAAQ 259 (300)
Q Consensus 212 ~~GADivmVkPsmm---~ld~Ir~~~d~~~~vpi~aY~vSgeY~~~r~Aa~ 259 (300)
+...|+|++-..|+ -++.+++++..++++||+..+..........+.+
T Consensus 49 ~~~~dlvllD~~l~~~~g~~~~~~l~~~~~~~~ii~lt~~~~~~~~~~~~~ 99 (233)
T 1ys7_A 49 ENRPDAIVLDINMPVLDGVSVVTALRAMDNDVPVCVLSARSSVDDRVAGLE 99 (233)
T ss_dssp HSCCSEEEEESSCSSSCHHHHHHHHHHTTCCCCEEEEECCCTTTCCCTTTT
T ss_pred hCCCCEEEEeCCCCCCCHHHHHHHHHhcCCCCCEEEEEcCCCHHHHHHHHH
Confidence 44579998876544 6889999988888999999976444333333333
No 256
>1wa3_A 2-keto-3-deoxy-6-phosphogluconate aldolase; KDPG, pyruvate, lyase; 1.9A {Thermotoga maritima} SCOP: c.1.10.1 PDB: 1vlw_A
Probab=48.95 E-value=34 Score=28.20 Aligned_cols=34 Identities=12% Similarity=0.135 Sum_probs=20.9
Q ss_pred hhcCCceeeccCcch-HHHHHHHHHhhCC-CCCEEe
Q psy15126 211 VSQGADFLMVKPALP-YLDIISEVKSRHP-AYPLFV 244 (300)
Q Consensus 211 a~~GADivmVkPsmm-~ld~Ir~~~d~~~-~vpi~a 244 (300)
.+.|+|+|-|.-..+ -.+.|+++++.++ +.+|.+
T Consensus 32 ~~~G~~~iev~~~~~~~~~~i~~ir~~~~~~~~ig~ 67 (205)
T 1wa3_A 32 FEGGVHLIEITFTVPDADTVIKELSFLKEKGAIIGA 67 (205)
T ss_dssp HHTTCCEEEEETTSTTHHHHHHHTHHHHHTTCEEEE
T ss_pred HHCCCCEEEEeCCChhHHHHHHHHHHHCCCCcEEEe
Confidence 578999996643333 3556777776654 455543
No 257
>2jk1_A HUPR, hydrogenase transcriptional regulatory protein HU; nucleotide-binding, transcription regulation; 2.10A {Rhodobacter capsulatus} PDB: 2vui_B 2vuh_B
Probab=48.83 E-value=37 Score=25.00 Aligned_cols=38 Identities=13% Similarity=0.241 Sum_probs=28.2
Q ss_pred hcCCceeeccCcc---hHHHHHHHHHhhCCCCCEEeEeccc
Q psy15126 212 SQGADFLMVKPAL---PYLDIISEVKSRHPAYPLFVYQVSG 249 (300)
Q Consensus 212 ~~GADivmVkPsm---m~ld~Ir~~~d~~~~vpi~aY~vSg 249 (300)
+...|+|++--.| .-++.++++++.++++|++..+...
T Consensus 42 ~~~~dlvl~D~~lp~~~g~~~~~~l~~~~~~~~ii~~s~~~ 82 (139)
T 2jk1_A 42 EEWVQVIICDQRMPGRTGVDFLTEVRERWPETVRIIITGYT 82 (139)
T ss_dssp HSCEEEEEEESCCSSSCHHHHHHHHHHHCTTSEEEEEESCT
T ss_pred cCCCCEEEEeCCCCCCcHHHHHHHHHHhCCCCcEEEEeCCC
Confidence 3456888876544 3678889988888889999986533
No 258
>1rd5_A Tryptophan synthase alpha chain, chloroplast; hydroxamic acid, diboa, dimboa, indole, indole-glycerol-PHOS lyase; 2.02A {Zea mays} SCOP: c.1.2.4 PDB: 1tjr_A
Probab=48.72 E-value=29 Score=30.11 Aligned_cols=18 Identities=22% Similarity=0.523 Sum_probs=13.8
Q ss_pred HHHHHHHHHhhCCCCCEEe
Q psy15126 226 YLDIISEVKSRHPAYPLFV 244 (300)
Q Consensus 226 ~ld~Ir~~~d~~~~vpi~a 244 (300)
.++.++++++. .++|+..
T Consensus 82 ~~~~i~~ir~~-~~~Pv~~ 99 (262)
T 1rd5_A 82 VLEMLREVTPE-LSCPVVL 99 (262)
T ss_dssp HHHHHHHHGGG-CSSCEEE
T ss_pred HHHHHHHHHhc-CCCCEEE
Confidence 46788998887 4799854
No 259
>3ilh_A Two component response regulator; NYSGXRC, PSI-II, protein S initiative, structural genomics; 2.59A {Cytophaga hutchinsonii}
Probab=48.69 E-value=52 Score=23.97 Aligned_cols=35 Identities=9% Similarity=0.130 Sum_probs=26.5
Q ss_pred cCCceeeccCcch---HHHHHHHHHh----hCCCCCEEeEec
Q psy15126 213 QGADFLMVKPALP---YLDIISEVKS----RHPAYPLFVYQV 247 (300)
Q Consensus 213 ~GADivmVkPsmm---~ld~Ir~~~d----~~~~vpi~aY~v 247 (300)
...|+|++--.|+ -++.+++++. .++++||+..+.
T Consensus 59 ~~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~~~~~ii~~t~ 100 (146)
T 3ilh_A 59 RWPSIICIDINMPGINGWELIDLFKQHFQPMKNKSIVCLLSS 100 (146)
T ss_dssp CCCSEEEEESSCSSSCHHHHHHHHHHHCGGGTTTCEEEEECS
T ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHHhhhhccCCCeEEEEeC
Confidence 4579988875543 6888888888 568899998854
No 260
>2zvi_A 2,3-diketo-5-methylthiopentyl-1-phosphate enolase; methionine salvage pathway, amino-acid biosynthesis, isomerase, magnesium, metal- binding; 2.30A {Bacillus subtilis}
Probab=48.36 E-value=15 Score=35.96 Aligned_cols=70 Identities=21% Similarity=0.242 Sum_probs=41.0
Q ss_pred hhcCCceeeccCcchHHHHHHHHHhhC-CCCCEEeEec-ccccHHHHHHHhCCCCCHHHHHHHHHHHHHHcCCCEEEec
Q psy15126 211 VSQGADFLMVKPALPYLDIISEVKSRH-PAYPLFVYQV-SGEYAMLAFAAQAGALDLKRALMETLTCLRRGGADVIISY 287 (300)
Q Consensus 211 a~~GADivmVkPsmm~ld~Ir~~~d~~-~~vpi~aY~v-SgeY~~~r~Aa~~~~~n~~eal~E~~~~~~r~GAD~Ii~y 287 (300)
.+.|+.++||.+-.-=..+++.+.+.. .++||..+-+ +|-|. .-.+.|+ +. .+++-.+..+ +|||.|.+-
T Consensus 243 ~e~G~~~~mvd~~~~G~~a~~~l~~~~~~~l~lh~HrA~hga~~---r~~~~Gi-~~-~Vll~Kl~RL--aGaD~ih~g 314 (425)
T 2zvi_A 243 AELGADALLFNVFAYGLDVMQGLAEDPEIPVPIMAHPAVSGAFT---SSPFYGF-SH-ALLLGKLNRY--CGADFSLFP 314 (425)
T ss_dssp HHTTCSEEEECGGGTCHHHHHHHHHCTTCCSCEEECCTTGGGGT---SCSSSEE-CH-HHHTTHHHHH--TTCSEEEEC
T ss_pred HHhCCCeEEEeeeccChHHHHHHHHhCcCCCEEEeccCCccccc---CCCCCCC-cH-HHHHhHHHHH--hCCCccccC
Confidence 578999999998754455566655542 5899999866 22221 1011222 22 2332444445 799988763
No 261
>1vzw_A Phosphoribosyl isomerase A; histidine biosynthesis, tryptophan biosynthesis; 1.8A {Streptomyces coelicolor} SCOP: c.1.2.1 PDB: 2vep_A 2x30_A
Probab=48.17 E-value=72 Score=26.92 Aligned_cols=33 Identities=18% Similarity=0.196 Sum_probs=24.2
Q ss_pred hhcCCceeecc-------CcchHHHHHHHHHhhCCCCCEEeE
Q psy15126 211 VSQGADFLMVK-------PALPYLDIISEVKSRHPAYPLFVY 245 (300)
Q Consensus 211 a~~GADivmVk-------Psmm~ld~Ir~~~d~~~~vpi~aY 245 (300)
.++|||.|-|- |...+ +.|+++++.+ ++|+..-
T Consensus 42 ~~~Gad~i~v~~~d~~~~~~~~~-~~i~~i~~~~-~ipv~v~ 81 (244)
T 1vzw_A 42 QRSGAEWLHLVDLDAAFGTGDNR-ALIAEVAQAM-DIKVELS 81 (244)
T ss_dssp HHTTCSEEEEEEHHHHHTSCCCH-HHHHHHHHHC-SSEEEEE
T ss_pred HHcCCCEEEEecCchhhcCCChH-HHHHHHHHhc-CCcEEEE
Confidence 46888888552 33346 8899998876 7999874
No 262
>1mzh_A Deoxyribose-phosphate aldolase; alpha-beta barrel, structural genomics, PSI, protein structure initiative; 2.00A {Aquifex aeolicus} SCOP: c.1.10.1
Probab=48.16 E-value=1.1e+02 Score=26.39 Aligned_cols=66 Identities=26% Similarity=0.306 Sum_probs=43.2
Q ss_pred hhcCCceeeccCcc------hHHHHHHHHHhhC-CCCCEEeEecccccHHHHHHHhCCCCCHHHHHHHHHHHHHHcCCCE
Q psy15126 211 VSQGADFLMVKPAL------PYLDIISEVKSRH-PAYPLFVYQVSGEYAMLAFAAQAGALDLKRALMETLTCLRRGGADV 283 (300)
Q Consensus 211 a~~GADivmVkPsm------m~ld~Ir~~~d~~-~~vpi~aY~vSgeY~~~r~Aa~~~~~n~~eal~E~~~~~~r~GAD~ 283 (300)
.++|||+| +-+. ..++.++.+++.. .++||.+=. |..+.+++ . .-+ ++|||.
T Consensus 142 ~eaGad~I--~tstg~~~gga~~~~i~~v~~~v~~~ipVia~G--------------GI~t~~da-~---~~l-~aGA~~ 200 (225)
T 1mzh_A 142 IEAGADFI--KTSTGFAPRGTTLEEVRLIKSSAKGRIKVKASG--------------GIRDLETA-I---SMI-EAGADR 200 (225)
T ss_dssp HHHTCSEE--ECCCSCSSSCCCHHHHHHHHHHHTTSSEEEEES--------------SCCSHHHH-H---HHH-HTTCSE
T ss_pred HHhCCCEE--EECCCCCCCCCCHHHHHHHHHHhCCCCcEEEEC--------------CCCCHHHH-H---HHH-HhCchH
Confidence 57899999 5442 1467777777652 368988752 34444332 2 233 589999
Q ss_pred EEecchHHHHHHHh
Q psy15126 284 IISYYTPRVLEWLR 297 (300)
Q Consensus 284 Ii~y~A~~~ld~l~ 297 (300)
|=+..+..+.+-++
T Consensus 201 iG~s~~~~i~~~~~ 214 (225)
T 1mzh_A 201 IGTSSGISIAEEFL 214 (225)
T ss_dssp EEESCHHHHHHHHH
T ss_pred HHHccHHHHHHHHH
Confidence 98888888776554
No 263
>2dwu_A Glutamate racemase; isomerase; HET: DGL; 1.60A {Bacillus anthracis}
Probab=48.12 E-value=1.4e+02 Score=26.45 Aligned_cols=100 Identities=13% Similarity=0.181 Sum_probs=0.0
Q ss_pred CCceEEEEeecccCCCCCCccccccCCCcccchHhHHHHHHHHHhhhcccccCCCCCccccchhhhcCCceeeccCcchH
Q psy15126 147 SKGLAIRAAVCLCGYTSHGHCAIFNEDGSIHYEKTLKRLADISKAFSDAVYVPNHNTDRFQARDVSQGADFLMVKPALPY 226 (300)
Q Consensus 147 ~~~~ai~~dvclc~yt~hGHcgi~~~~g~i~nd~tl~~l~~~a~~~a~~~~~~~~n~~~~~~~Da~~GADivmVkPsmm~ 226 (300)
+.+..-..|....|| |.-..+.-.+++.+.+..+ .++|+|+|+++=..+-
T Consensus 32 ~~~~iy~~D~~~~Py------------G~~s~~~i~~~~~~~~~~L------------------~~~g~d~IViACNTas 81 (276)
T 2dwu_A 32 KESICYIGDNERCPY------------GPRSVEEVQSFVFEMVEFL------------------KQFPLKALVVACNTAA 81 (276)
T ss_dssp TSCEEEEECGGGCCC------------TTSCHHHHHHHHHHHHHHH------------------TTSCEEEEEECCHHHH
T ss_pred CCcEEEccCCCCCCC------------CCCCHHHHHHHHHHHHHHH------------------HHCCCCEEEEeCCcHH
Q ss_pred HHHHHHHHhhCCCCCEEeEecccccHHHHHHH------------------------------------------------
Q psy15126 227 LDIISEVKSRHPAYPLFVYQVSGEYAMLAFAA------------------------------------------------ 258 (300)
Q Consensus 227 ld~Ir~~~d~~~~vpi~aY~vSgeY~~~r~Aa------------------------------------------------ 258 (300)
.-.+.++++.+ ++||+ +++..++
T Consensus 82 ~~~l~~lr~~~-~iPVi--------giiep~~~~A~~~~~~~rIgVlaT~~T~~s~~y~~~i~~~~~~~~v~~~~~~~~v 152 (276)
T 2dwu_A 82 AATLAALQEAL-SIPVI--------GVIHPGARAAIKVTKKGKIGVIGTVGTIQSNMYEKALHELDTYLKVHSHACPTLA 152 (276)
T ss_dssp HHHHHHHHHHC-SSCEE--------ESHHHHHHHHHHHCSSSEEEEEECHHHHHTTHHHHHHHHHCTTCEEEEEECTTHH
T ss_pred HHHHHHHHHHC-CCCEE--------eccHHHHHHHHHhcCCCeEEEEeChhhhhhHHHHHHHHHhCCCCEEEeeeCHHHH
Q ss_pred ---hCCCCC---HHHHHHHHHHHHHHcCCCEEE
Q psy15126 259 ---QAGALD---LKRALMETLTCLRRGGADVII 285 (300)
Q Consensus 259 ---~~~~~n---~~eal~E~~~~~~r~GAD~Ii 285 (300)
+.|..+ .++.+.|.+..+++.|+|.|+
T Consensus 153 ~~ve~g~~~~~~~~~~l~~~l~~l~~~~~D~IV 185 (276)
T 2dwu_A 153 TVVENRLEDTAYVTQQVKQALLPLTKEDIDTLI 185 (276)
T ss_dssp HHHHHSTTCHHHHHHHHHHHHHHHHTSCCSEEE
T ss_pred HHHHcCCcCCHHHHHHHHHHHHHHHhcCCCEEE
No 264
>4f0h_A Ribulose bisphosphate carboxylase large chain; alpha beta domain, catalytic domain TIM barrel, carboxylase/oxygenase, nitrosylation; 1.96A {Galdieria sulphuraria} PDB: 4f0k_A 4f0m_A 1bwv_A* 1iwa_A 1bxn_A
Probab=47.77 E-value=29 Score=34.69 Aligned_cols=42 Identities=12% Similarity=0.067 Sum_probs=31.0
Q ss_pred HHhHHHHHHHHHHHHHcCCCccc--------cCCCCcchHHHHHHHHhhC
Q psy15126 61 EKTLKRLADISKAFSDAGAHIVA--------PSDMMDNRIHAIKQSLFTS 102 (300)
Q Consensus 61 d~Tl~~l~~~A~~~A~aGad~vA--------PSdmMDgrv~air~aLd~~ 102 (300)
-.|.+.+++++.+++..|.|+|= |-.-+.-|+....++++.+
T Consensus 188 GLs~~~~a~~~ye~~~GGlDfIKDDE~l~~Qpf~p~~eRv~~v~eai~rA 237 (493)
T 4f0h_A 188 GLSGKNYGRVVYEALKGGLDFVKDDENINSQPFMRWRERYLFVMEAVNKA 237 (493)
T ss_dssp CCCHHHHHHHHHHHHHHTCSEEECCTTCSSBTTBCHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHhcCCCccccccccCCCCCccHHHHHHHHHHHHHHH
Confidence 36889999999999999999872 2334566666666666554
No 265
>3zwt_A Dihydroorotate dehydrogenase (quinone), mitochond; oxidoreductase; HET: FMN ORO KFZ; 1.55A {Homo sapiens} PDB: 1d3h_A* 2bxv_A* 2prh_A* 2prl_A* 2prm_A* 3f1q_A* 3fj6_A* 3fjl_A* 3g0u_A* 3g0x_A* 3zws_A* 1d3g_A* 3u2o_A* 2fpv_A* 2fpt_A* 2fpy_A* 2fqi_A* 3kvl_A* 3kvk_A* 3kvj_A* ...
Probab=47.73 E-value=66 Score=30.22 Aligned_cols=45 Identities=22% Similarity=0.291 Sum_probs=30.7
Q ss_pred HHHHHHHHhhCC-CCCEEeEecccccHHHHHHHhCCCCCHHHHHHHHHHHHHHcCCCEEEecchH
Q psy15126 227 LDIISEVKSRHP-AYPLFVYQVSGEYAMLAFAAQAGALDLKRALMETLTCLRRGGADVIISYYTP 290 (300)
Q Consensus 227 ld~Ir~~~d~~~-~vpi~aY~vSgeY~~~r~Aa~~~~~n~~eal~E~~~~~~r~GAD~Ii~y~A~ 290 (300)
++.|+++++..+ ++||++=. |..+.++| .| .+ ++|||.|+++-+.
T Consensus 285 ~~~v~~i~~~v~~~ipvI~~G--------------GI~s~~da-~~---~l-~~GAd~V~vgra~ 330 (367)
T 3zwt_A 285 TQTIREMYALTQGRVPIIGVG--------------GVSSGQDA-LE---KI-RAGASLVQLYTAL 330 (367)
T ss_dssp HHHHHHHHHHTTTCSCEEEES--------------SCCSHHHH-HH---HH-HHTCSEEEESHHH
T ss_pred HHHHHHHHHHcCCCceEEEEC--------------CCCCHHHH-HH---HH-HcCCCEEEECHHH
Confidence 688999888854 78988642 33444333 33 33 4799999998776
No 266
>2gkg_A Response regulator homolog; social motility, receiver domain, signalling, high resolutio signaling protein; 1.00A {Myxococcus xanthus} PDB: 2i6f_A 2nt4_A 2nt3_A
Probab=47.71 E-value=44 Score=23.56 Aligned_cols=58 Identities=12% Similarity=0.066 Sum_probs=38.1
Q ss_pred hcCCceeeccCcc----hHHHHHHHHHhh--CCCCCEEeEecccccHHHHHHHhCCCCCHHHHHHHHHHHHHHcCCCEEE
Q psy15126 212 SQGADFLMVKPAL----PYLDIISEVKSR--HPAYPLFVYQVSGEYAMLAFAAQAGALDLKRALMETLTCLRRGGADVII 285 (300)
Q Consensus 212 ~~GADivmVkPsm----m~ld~Ir~~~d~--~~~vpi~aY~vSgeY~~~r~Aa~~~~~n~~eal~E~~~~~~r~GAD~Ii 285 (300)
+...|+|++--.+ .-++.+++++.. ++++||+.. .+..- +......+.||+-++
T Consensus 47 ~~~~dlvi~d~~~~~~~~g~~~~~~l~~~~~~~~~~ii~~-~~~~~-------------------~~~~~~~~~g~~~~l 106 (127)
T 2gkg_A 47 RDRPDLVVLAVDLSAGQNGYLICGKLKKDDDLKNVPIVII-GNPDG-------------------FAQHRKLKAHADEYV 106 (127)
T ss_dssp HHCCSEEEEESBCGGGCBHHHHHHHHHHSTTTTTSCEEEE-ECGGG-------------------HHHHHHSTTCCSEEE
T ss_pred hcCCCEEEEeCCCCCCCCHHHHHHHHhcCccccCCCEEEE-ecCCc-------------------hhHHHHHHhCcchhe
Confidence 3457888876443 357888888877 689999988 42211 111122368998889
Q ss_pred ecch
Q psy15126 286 SYYT 289 (300)
Q Consensus 286 ~y~A 289 (300)
.||.
T Consensus 107 ~kp~ 110 (127)
T 2gkg_A 107 AKPV 110 (127)
T ss_dssp ESSC
T ss_pred eCCC
Confidence 9883
No 267
>4adt_A Pyridoxine biosynthetic enzyme PDX1 homologue, PU; transferase, pyridoxal 5-phosphate biosynthesis; 2.42A {Plasmodium berghei} PDB: 4adu_A* 4ads_A
Probab=47.17 E-value=45 Score=30.76 Aligned_cols=34 Identities=18% Similarity=0.070 Sum_probs=26.5
Q ss_pred hhcCCceeecc---C-----cc-----hHHHHHHHHHhhCCCCCEEeE
Q psy15126 211 VSQGADFLMVK---P-----AL-----PYLDIISEVKSRHPAYPLFVY 245 (300)
Q Consensus 211 a~~GADivmVk---P-----sm-----m~ld~Ir~~~d~~~~vpi~aY 245 (300)
.++|||-|||= | +. .-++.|+++++.. ++||++.
T Consensus 38 e~~GA~~lsvLe~~~~Di~~~~g~~R~~~~~~i~~i~~~v-~iPvl~k 84 (297)
T 4adt_A 38 EKAGAIGVMILENIPSELRNTDGVARSVDPLKIEEIRKCI-SINVLAK 84 (297)
T ss_dssp HHHTCSEEEECCCCC-----CCCCCCCCCHHHHHHHHTTC-CSEEEEE
T ss_pred HHcCCCEEEEecCCCCcchhcCCcccCCCHHHHHHHHHhc-CCCEEEe
Confidence 58999999887 1 11 1588999999885 7999987
No 268
>2r91_A 2-keto-3-deoxy-(6-phospho-)gluconate aldolase; TIM barrel, thermophilic, lyase; 2.00A {Thermoproteus tenax} PDB: 2r94_A
Probab=47.16 E-value=38 Score=30.34 Aligned_cols=36 Identities=22% Similarity=0.358 Sum_probs=26.0
Q ss_pred hhcCCceeeccCc---c-h----HHHHHHHHHhhCCCCCEEeEec
Q psy15126 211 VSQGADFLMVKPA---L-P----YLDIISEVKSRHPAYPLFVYQV 247 (300)
Q Consensus 211 a~~GADivmVkPs---m-m----~ld~Ir~~~d~~~~vpi~aY~v 247 (300)
.+.|||.+||-|- - + .++..+++.+.. ++||+-|++
T Consensus 87 ~~~Gadavlv~~P~y~~~~s~~~l~~~f~~va~a~-~lPiilYn~ 130 (286)
T 2r91_A 87 ESRGAEAVASLPPYYFPRLSERQIAKYFRDLCSAV-SIPVFLYNY 130 (286)
T ss_dssp HHTTCSEEEECCSCSSTTCCHHHHHHHHHHHHHHC-SSCEEEEEC
T ss_pred HhcCCCEEEEcCCcCCCCCCHHHHHHHHHHHHHhc-CCCEEEEeC
Confidence 4689999988543 1 2 455666777765 799999997
No 269
>3cg4_A Response regulator receiver domain protein (CHEY-; structural genomics, unknown function; HET: MSE; 1.61A {Methanospirillum hungatei jf-1}
Probab=47.13 E-value=23 Score=25.94 Aligned_cols=35 Identities=6% Similarity=0.080 Sum_probs=26.9
Q ss_pred cCCceeeccCc---chHHHHHHHHHh--hCCCCCEEeEec
Q psy15126 213 QGADFLMVKPA---LPYLDIISEVKS--RHPAYPLFVYQV 247 (300)
Q Consensus 213 ~GADivmVkPs---mm~ld~Ir~~~d--~~~~vpi~aY~v 247 (300)
...|+|++--. +.-++.++++++ .++++||+.++.
T Consensus 50 ~~~dlii~d~~l~~~~g~~~~~~l~~~~~~~~~pii~~s~ 89 (142)
T 3cg4_A 50 GFSGVVLLDIMMPGMDGWDTIRAILDNSLEQGIAIVMLTA 89 (142)
T ss_dssp CCCEEEEEESCCSSSCHHHHHHHHHHTTCCTTEEEEEEEC
T ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHhhcccCCCCEEEEEC
Confidence 34688887644 346888999988 678899999965
No 270
>1mxs_A KDPG aldolase; 2-keto-3-deoxy-6-phosphogluconate aldolase, sulfate, beta-BA lyase; 2.20A {Pseudomonas putida} SCOP: c.1.10.1
Probab=47.04 E-value=27 Score=30.60 Aligned_cols=57 Identities=19% Similarity=0.204 Sum_probs=33.7
Q ss_pred hhcCCceeeccCcchHHHHHHHHHhhCCCCCEEeEecccccHHHHHHHhCCCCCHHHHHHHHHHHHHHcCCCEEEecchH
Q psy15126 211 VSQGADFLMVKPALPYLDIISEVKSRHPAYPLFVYQVSGEYAMLAFAAQAGALDLKRALMETLTCLRRGGADVIISYYTP 290 (300)
Q Consensus 211 a~~GADivmVkPsmm~ld~Ir~~~d~~~~vpi~aY~vSgeY~~~r~Aa~~~~~n~~eal~E~~~~~~r~GAD~Ii~y~A~ 290 (300)
+++|||+| +.|.. -.++++..+. + ++|++.= + .+. -|..... +.|||+|.++|+.
T Consensus 95 ~~aGAd~v-~~p~~-d~~v~~~~~~-~-g~~~i~G-~---------------~t~----~e~~~A~-~~Gad~vk~FPa~ 149 (225)
T 1mxs_A 95 EAAGAQFV-VTPGI-TEDILEAGVD-S-EIPLLPG-I---------------STP----SEIMMGY-ALGYRRFKLFPAE 149 (225)
T ss_dssp HHHTCSSE-ECSSC-CHHHHHHHHH-C-SSCEECE-E---------------CSH----HHHHHHH-TTTCCEEEETTHH
T ss_pred HHCCCCEE-EeCCC-CHHHHHHHHH-h-CCCEEEe-e---------------CCH----HHHHHHH-HCCCCEEEEccCc
Confidence 68999999 46652 2333333333 3 4555431 2 244 3444455 6899999999965
Q ss_pred HH
Q psy15126 291 RV 292 (300)
Q Consensus 291 ~~ 292 (300)
..
T Consensus 150 ~~ 151 (225)
T 1mxs_A 150 IS 151 (225)
T ss_dssp HH
T ss_pred cc
Confidence 44
No 271
>1yxy_A Putative N-acetylmannosamine-6-phosphate 2-epimer; structural genomics, epimerase, PSI, structure initiative; 1.60A {Streptococcus pyogenes} SCOP: c.1.2.5
Probab=47.04 E-value=65 Score=27.12 Aligned_cols=34 Identities=18% Similarity=0.261 Sum_probs=24.2
Q ss_pred hhcCCceeecc------Cc-chHHHHHHHHHhhCCCCCEEe
Q psy15126 211 VSQGADFLMVK------PA-LPYLDIISEVKSRHPAYPLFV 244 (300)
Q Consensus 211 a~~GADivmVk------Ps-mm~ld~Ir~~~d~~~~vpi~a 244 (300)
.++|||+|.+- |. ..-.+.|+++++.+++.+++.
T Consensus 98 ~~~Gad~V~l~~~~~~~~~~~~~~~~i~~i~~~~~~~~v~~ 138 (234)
T 1yxy_A 98 AALNIAVIAMDCTKRDRHDGLDIASFIRQVKEKYPNQLLMA 138 (234)
T ss_dssp HTTTCSEEEEECCSSCCTTCCCHHHHHHHHHHHCTTCEEEE
T ss_pred HHcCCCEEEEcccccCCCCCccHHHHHHHHHHhCCCCeEEE
Confidence 68999999763 32 234678888888877777664
No 272
>2nuw_A 2-keto-3-deoxygluconate/2-keto-3-deoxy-6-phospho aldolase; TIM barrel, lyase; 1.80A {Sulfolobus acidocaldarius dsm 639} PDB: 2nux_A 2nuy_A
Probab=46.77 E-value=39 Score=30.35 Aligned_cols=36 Identities=8% Similarity=0.037 Sum_probs=26.1
Q ss_pred hhcCCceeeccCc---c-h----HHHHHHHHHhhCCCCCEEeEec
Q psy15126 211 VSQGADFLMVKPA---L-P----YLDIISEVKSRHPAYPLFVYQV 247 (300)
Q Consensus 211 a~~GADivmVkPs---m-m----~ld~Ir~~~d~~~~vpi~aY~v 247 (300)
.+.|||.+||-|- - + .++..+++.+.. ++||+-|++
T Consensus 88 ~~~Gadavlv~~P~y~~~~s~~~l~~~f~~va~a~-~lPiilYn~ 131 (288)
T 2nuw_A 88 NEMDILGVSSHSPYYFPRLPEKFLAKYYEEIARIS-SHSLYIYNY 131 (288)
T ss_dssp HTSCCSEEEECCCCSSCSCCHHHHHHHHHHHHHHC-CSCEEEEEC
T ss_pred HhcCCCEEEEcCCcCCCCCCHHHHHHHHHHHHHhc-CCCEEEEEC
Confidence 4689999988442 1 2 456667777765 799999998
No 273
>2ehh_A DHDPS, dihydrodipicolinate synthase; structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.90A {Aquifex aeolicus}
Probab=46.72 E-value=39 Score=30.34 Aligned_cols=36 Identities=22% Similarity=0.400 Sum_probs=26.4
Q ss_pred hhcCCceeeccCc-c--h----HHHHHHHHHhhCCCCCEEeEec
Q psy15126 211 VSQGADFLMVKPA-L--P----YLDIISEVKSRHPAYPLFVYQV 247 (300)
Q Consensus 211 a~~GADivmVkPs-m--m----~ld~Ir~~~d~~~~vpi~aY~v 247 (300)
.+.|||.+||-|- - + .+...+++.+.. ++||+-|++
T Consensus 92 ~~~Gadavlv~~P~y~~~s~~~l~~~f~~va~a~-~lPiilYn~ 134 (294)
T 2ehh_A 92 KEVGADGALVVVPYYNKPTQRGLYEHFKTVAQEV-DIPIIIYNI 134 (294)
T ss_dssp HHTTCSEEEEECCCSSCCCHHHHHHHHHHHHHHC-CSCEEEEEC
T ss_pred HhcCCCEEEECCCCCCCCCHHHHHHHHHHHHHhc-CCCEEEEeC
Confidence 4689999888543 1 1 466667777775 799999997
No 274
>3n53_A Response regulator receiver modulated diguanylate; diguanylate cyclase, protein structure I II(PSI II), NYSGXRC, structural genomics; 2.20A {Pelobacter carbinolicus} SCOP: c.23.1.0
Probab=46.59 E-value=26 Score=25.85 Aligned_cols=46 Identities=11% Similarity=0.140 Sum_probs=29.3
Q ss_pred CCccccchhhhcCCceeeccCcch---HHHHHHHHHhhC--CCCCEEeEec
Q psy15126 202 NTDRFQARDVSQGADFLMVKPALP---YLDIISEVKSRH--PAYPLFVYQV 247 (300)
Q Consensus 202 n~~~~~~~Da~~GADivmVkPsmm---~ld~Ir~~~d~~--~~vpi~aY~v 247 (300)
|.......-.+...|+|++--.|+ -++.+++++... +++||+..+.
T Consensus 34 ~~~~a~~~~~~~~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~~~ii~~s~ 84 (140)
T 3n53_A 34 NEKEALEQIDHHHPDLVILDMDIIGENSPNLCLKLKRSKGLKNVPLILLFS 84 (140)
T ss_dssp SHHHHHHHHHHHCCSEEEEETTC------CHHHHHHTSTTCTTCCEEEEEC
T ss_pred CHHHHHHHHhcCCCCEEEEeCCCCCCcHHHHHHHHHcCcccCCCCEEEEec
Confidence 333333333345679998886654 577888888775 8999999865
No 275
>1ykw_A Rubisco-like protein; beta-alpha-barrel, unknown function; 2.00A {Chlorobaculum tepidum} SCOP: c.1.14.1 d.58.9.1 PDB: 1tel_A
Probab=46.30 E-value=57 Score=32.03 Aligned_cols=69 Identities=20% Similarity=0.221 Sum_probs=40.2
Q ss_pred hhcCCceeeccCcchHHHHHHHHHhhCCCCCEEeEecccccHHHHHHHhCCCCCHHHHHHHHHHHHHHcCCCEEEec
Q psy15126 211 VSQGADFLMVKPALPYLDIISEVKSRHPAYPLFVYQVSGEYAMLAFAAQAGALDLKRALMETLTCLRRGGADVIISY 287 (300)
Q Consensus 211 a~~GADivmVkPsmm~ld~Ir~~~d~~~~vpi~aY~vSgeY~~~r~Aa~~~~~n~~eal~E~~~~~~r~GAD~Ii~y 287 (300)
.+.|+.++||-+-.-=..+++.+.+. +++||..+-+ ..|.+-.-.+.|. +. .++ -.+..+ +|||.|.+-
T Consensus 254 ~e~G~~~~mvd~~~~G~~a~~~l~~~-~~l~lh~HrA--~hg~~~r~~~~Gi-~~-~vl-~Kl~Rl--aG~D~ih~g 322 (435)
T 1ykw_A 254 VRNGANALLINALPVGLSAVRMLSNY-TQVPLIGHFP--FIASFSRMEKYGI-HS-KVM-TKLQRL--AGLDAVIMP 322 (435)
T ss_dssp HHHTCCEEEEEHHHHCHHHHHHHHHH-CSSCEEEECT--TTHHHHCSTTSEE-CH-HHH-HHHHHH--HTCSEEEEE
T ss_pred HHcCCCEEEEeccccChHHHHHHHhc-CCCeEEEccC--cceeccCCCCCCc-CH-HHH-HHHHHH--cCCCeeecC
Confidence 57899999998754323445554444 5899999965 3343322112232 22 233 334444 799998863
No 276
>1mb3_A Cell division response regulator DIVK; signal transduction protein, structural proteomics in europe, spine, structural genomics; 1.41A {Caulobacter vibrioides} SCOP: c.23.1.1 PDB: 1m5u_A 1mav_A 1mb0_A 1m5t_A
Probab=46.09 E-value=30 Score=24.61 Aligned_cols=36 Identities=14% Similarity=0.256 Sum_probs=25.4
Q ss_pred hcCCceeeccCcc---hHHHHHHHHHhh--CCCCCEEeEec
Q psy15126 212 SQGADFLMVKPAL---PYLDIISEVKSR--HPAYPLFVYQV 247 (300)
Q Consensus 212 ~~GADivmVkPsm---m~ld~Ir~~~d~--~~~vpi~aY~v 247 (300)
+...|+|++--.| .-++.++++++. ++++||+..+.
T Consensus 43 ~~~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~~~ii~~s~ 83 (124)
T 1mb3_A 43 ENKPDLILMDIQLPEISGLEVTKWLKEDDDLAHIPVVAVTA 83 (124)
T ss_dssp HHCCSEEEEESBCSSSBHHHHHHHHHHSTTTTTSCEEEEC-
T ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHcCccccCCcEEEEEC
Confidence 3457888876444 367888888875 57899998854
No 277
>2pz0_A Glycerophosphoryl diester phosphodiesterase; glycerophosphodiester phosphodiesterase, T. tengcongensis; 1.91A {Thermoanaerobacter tengcongensis}
Probab=45.75 E-value=57 Score=28.12 Aligned_cols=96 Identities=16% Similarity=0.191 Sum_probs=55.0
Q ss_pred chHhHHHHHHHHHhhhcccccCCCCCccccchhhhcCCceeeccCcc--hHHHHHHHHHhhCCCCCEEeEecccccHHHH
Q psy15126 178 YEKTLKRLADISKAFSDAVYVPNHNTDRFQARDVSQGADFLMVKPAL--PYLDIISEVKSRHPAYPLFVYQVSGEYAMLA 255 (300)
Q Consensus 178 nd~tl~~l~~~a~~~a~~~~~~~~n~~~~~~~Da~~GADivmVkPsm--m~ld~Ir~~~d~~~~vpi~aY~vSgeY~~~r 255 (300)
|..+|+++.+..-.. ...|+-.....+....-.+.|++.+ .|.. .--..|+++++. +++|.+|.|
T Consensus 153 ~~~~l~~~~~~~p~~-~~~~l~~~~~~~~~~~~~~~~~~~i--~~~~~~~~~~~v~~~~~~--G~~v~~wTv-------- 219 (252)
T 2pz0_A 153 NHYSLRDVKKMAPHL-KIGLLYQCGLVEPWHMALRMEAYSL--HPFYFNIIPELVEGCKKN--GVKLFPWTV-------- 219 (252)
T ss_dssp BHHHHHHHHHHCTTS-EEEEEECSBCSSTHHHHHHTTCSEE--EEBGGGCCHHHHHHHHHT--TCEECCBCC--------
T ss_pred CHHHHHHHHHHCCCC-CEEEEecCccccHHHHHHHcCCeEE--ecchhcCCHHHHHHHHHC--CCEEEEECC--------
Confidence 455666666553221 1112212222222222345688888 6652 245677777774 689999976
Q ss_pred HHHhCCCCCHHHHHHHHHHHHHHcCCCEEEecchHHHHHHHhh
Q psy15126 256 FAAQAGALDLKRALMETLTCLRRGGADVIISYYTPRVLEWLRE 298 (300)
Q Consensus 256 ~Aa~~~~~n~~eal~E~~~~~~r~GAD~Ii~y~A~~~ld~l~~ 298 (300)
|..+. +..+.+.|+|.|+|-+.....+++++
T Consensus 220 --------n~~~~----~~~l~~~GvdgIiTD~P~~~~~~l~~ 250 (252)
T 2pz0_A 220 --------DRKED----MERMIKAGVDGIITDDPETLINLVRK 250 (252)
T ss_dssp --------CSHHH----HHHHHHHTCSEEEESCHHHHHHHHC-
T ss_pred --------CCHHH----HHHHHHcCCCEEEcCCHHHHHHHHhh
Confidence 44332 22333579999999987777777765
No 278
>1geq_A Tryptophan synthase alpha-subunit; hyperthermophIle, pyrococ furiosus, X-RAY analysis, stability, calorimetry, lyase; 2.00A {Pyrococcus furiosus} SCOP: c.1.2.4 PDB: 1wdw_A* 2dzu_A 2dzp_A 2e09_A 2dzw_A 2dzs_A 2dzv_A 2dzt_A 2dzx_A
Probab=45.75 E-value=61 Score=27.47 Aligned_cols=17 Identities=18% Similarity=0.434 Sum_probs=12.7
Q ss_pred HHHHHHHHhhCCCCCEEe
Q psy15126 227 LDIISEVKSRHPAYPLFV 244 (300)
Q Consensus 227 ld~Ir~~~d~~~~vpi~a 244 (300)
++.|+++++.+ ++||..
T Consensus 69 ~~~i~~i~~~~-~~pv~~ 85 (248)
T 1geq_A 69 FWIVKEFRRHS-STPIVL 85 (248)
T ss_dssp HHHHHHHHTTC-CCCEEE
T ss_pred HHHHHHHHhhC-CCCEEE
Confidence 77899998875 677653
No 279
>1w3i_A EDA, 2-keto-3-deoxy gluconate aldolase; archaeal metabolism, pyruvate; 1.7A {Sulfolobus solfataricus} SCOP: c.1.10.1 PDB: 1w37_A 1w3n_A* 1w3t_A* 2yda_A*
Probab=45.66 E-value=41 Score=30.27 Aligned_cols=36 Identities=6% Similarity=0.037 Sum_probs=26.1
Q ss_pred hhcCCceeeccCc---c-h----HHHHHHHHHhhCCCCCEEeEec
Q psy15126 211 VSQGADFLMVKPA---L-P----YLDIISEVKSRHPAYPLFVYQV 247 (300)
Q Consensus 211 a~~GADivmVkPs---m-m----~ld~Ir~~~d~~~~vpi~aY~v 247 (300)
.+.|||.+||-|- - + .++..+++.+.. ++||+-|++
T Consensus 88 ~~~Gadavlv~~P~y~~~~s~~~l~~~f~~va~a~-~lPiilYn~ 131 (293)
T 1w3i_A 88 KDFDIVGIASYAPYYYPRMSEKHLVKYFKTLCEVS-PHPVYLYNY 131 (293)
T ss_dssp GGSCCSEEEEECCCSCSSCCHHHHHHHHHHHHHHC-SSCEEEEEC
T ss_pred HhcCCCEEEEcCCCCCCCCCHHHHHHHHHHHHhhC-CCCEEEEEC
Confidence 4689999888442 1 2 456666777775 799999997
No 280
>2vc6_A MOSA, dihydrodipicolinate synthase; DHDPS, TIM barrel, schiff base, lyase; HET: MCL; 1.95A {Sinorhizobium meliloti}
Probab=45.64 E-value=40 Score=30.28 Aligned_cols=36 Identities=19% Similarity=0.476 Sum_probs=26.2
Q ss_pred hhcCCceeeccCc-c--h----HHHHHHHHHhhCCCCCEEeEec
Q psy15126 211 VSQGADFLMVKPA-L--P----YLDIISEVKSRHPAYPLFVYQV 247 (300)
Q Consensus 211 a~~GADivmVkPs-m--m----~ld~Ir~~~d~~~~vpi~aY~v 247 (300)
.+.|||.+||-|- - + .+...+++.+.. ++||+-|++
T Consensus 92 ~~~Gadavlv~~P~y~~~s~~~l~~~f~~ia~a~-~lPiilYn~ 134 (292)
T 2vc6_A 92 QNAGADGVLIVSPYYNKPTQEGIYQHFKAIDAAS-TIPIIVYNI 134 (292)
T ss_dssp HHTTCSEEEEECCCSSCCCHHHHHHHHHHHHHHC-SSCEEEEEC
T ss_pred HHcCCCEEEEcCCCCCCCCHHHHHHHHHHHHHhC-CCCEEEEeC
Confidence 4689998887553 1 1 455666777775 799999997
No 281
>3a10_A Response regulator; phosphoacceptor, signaling protein; HET: MSE PG4; 1.63A {Thermotoga maritima} PDB: 3a0r_B* 3a0u_A*
Probab=45.58 E-value=52 Score=23.08 Aligned_cols=57 Identities=12% Similarity=0.184 Sum_probs=38.8
Q ss_pred hcCCceeeccCcc---hHHHHHHHHHhhCCCCCEEeEecccccHHHHHHHhCCCCCHHHHHHHHHHHHHHcCCCEEEecc
Q psy15126 212 SQGADFLMVKPAL---PYLDIISEVKSRHPAYPLFVYQVSGEYAMLAFAAQAGALDLKRALMETLTCLRRGGADVIISYY 288 (300)
Q Consensus 212 ~~GADivmVkPsm---m~ld~Ir~~~d~~~~vpi~aY~vSgeY~~~r~Aa~~~~~n~~eal~E~~~~~~r~GAD~Ii~y~ 288 (300)
+...|+|++--.| .-++.++++++..+++||+..+....+. ...+ +.||+-.+.||
T Consensus 43 ~~~~dlvl~D~~l~~~~g~~~~~~l~~~~~~~~ii~~s~~~~~~--------------------~~~~-~~g~~~~l~Kp 101 (116)
T 3a10_A 43 SGNYDLVILDIEMPGISGLEVAGEIRKKKKDAKIILLTAYSHYR--------------------SDMS-SWAADEYVVKS 101 (116)
T ss_dssp HSCCSEEEECSCCSSSCHHHHHHHHHHHCTTCCEEEEESCGGGG--------------------GCGG-GGGSSEEEECC
T ss_pred cCCCCEEEEECCCCCCCHHHHHHHHHccCCCCeEEEEECCcchH--------------------HHHH-hccccceEECC
Confidence 3457888876544 3678888888877889999986533221 1123 57888888887
Q ss_pred h
Q psy15126 289 T 289 (300)
Q Consensus 289 A 289 (300)
-
T Consensus 102 ~ 102 (116)
T 3a10_A 102 F 102 (116)
T ss_dssp S
T ss_pred C
Confidence 3
No 282
>2yw3_A 4-hydroxy-2-oxoglutarate aldolase/2-deydro-3- deoxyphosphogluconate aldolase; structural genomics, NPPSFA; 1.67A {Thermus thermophilus} PDB: 2yw4_A
Probab=45.56 E-value=48 Score=28.33 Aligned_cols=54 Identities=26% Similarity=0.353 Sum_probs=32.8
Q ss_pred hhcCCceeeccCcchHHHHHHHHHhhCCCCCEEeEecccccHHHHHHHhCCCCCHHHHHHHHHHHHHHcCCCEEEecch
Q psy15126 211 VSQGADFLMVKPALPYLDIISEVKSRHPAYPLFVYQVSGEYAMLAFAAQAGALDLKRALMETLTCLRRGGADVIISYYT 289 (300)
Q Consensus 211 a~~GADivmVkPsmm~ld~Ir~~~d~~~~vpi~aY~vSgeY~~~r~Aa~~~~~n~~eal~E~~~~~~r~GAD~Ii~y~A 289 (300)
+++|||+| +.|... .++++..+.. ++|++.= + .+. .|..... ++|||.|-++|+
T Consensus 80 ~~~GAd~v-~~~~~d-~~v~~~~~~~--g~~~i~G-~---------------~t~----~e~~~A~-~~Gad~v~~fpa 133 (207)
T 2yw3_A 80 LEAGAAFL-VSPGLL-EEVAALAQAR--GVPYLPG-V---------------LTP----TEVERAL-ALGLSALKFFPA 133 (207)
T ss_dssp HHHTCSEE-EESSCC-HHHHHHHHHH--TCCEEEE-E---------------CSH----HHHHHHH-HTTCCEEEETTT
T ss_pred HHcCCCEE-EcCCCC-HHHHHHHHHh--CCCEEec-C---------------CCH----HHHHHHH-HCCCCEEEEecC
Confidence 67899998 567632 4455554443 3554431 2 243 3444455 689999999884
No 283
>2yxg_A DHDPS, dihydrodipicolinate synthase; MJ0244, TIM beta/alpha-barrel fold, structural genomics, NPPSFA; 2.20A {Methanocaldococcus jannaschii DSM2661}
Probab=45.56 E-value=37 Score=30.44 Aligned_cols=36 Identities=22% Similarity=0.385 Sum_probs=26.3
Q ss_pred hhcCCceeeccCc-c--h----HHHHHHHHHhhCCCCCEEeEec
Q psy15126 211 VSQGADFLMVKPA-L--P----YLDIISEVKSRHPAYPLFVYQV 247 (300)
Q Consensus 211 a~~GADivmVkPs-m--m----~ld~Ir~~~d~~~~vpi~aY~v 247 (300)
.+.|||.+||-|- - + .+...+++.+.. ++||+-|++
T Consensus 92 ~~~Gadavlv~~P~y~~~s~~~l~~~f~~ia~a~-~lPiilYn~ 134 (289)
T 2yxg_A 92 EDVGADAVLSITPYYNKPTQEGLRKHFGKVAESI-NLPIVLYNV 134 (289)
T ss_dssp HHHTCSEEEEECCCSSCCCHHHHHHHHHHHHHHC-SSCEEEEEC
T ss_pred HhcCCCEEEECCCCCCCCCHHHHHHHHHHHHHhc-CCCEEEEeC
Confidence 4679999888543 1 1 466667777775 799999997
No 284
>1qap_A Quinolinic acid phosphoribosyltransferase; glycosyltransferase, NAD biosynthesis; HET: NTM; 2.80A {Salmonella typhimurium} SCOP: c.1.17.1 d.41.2.1
Probab=45.05 E-value=70 Score=29.40 Aligned_cols=62 Identities=31% Similarity=0.372 Sum_probs=0.0
Q ss_pred hHHHHHHHHHhhhcccccCCCCCccccchhhhcCCceeeccCcchHHHHHHHHHhh-CCCCCEEeEecccccHHHHHHHh
Q psy15126 181 TLKRLADISKAFSDAVYVPNHNTDRFQARDVSQGADFLMVKPALPYLDIISEVKSR-HPAYPLFVYQVSGEYAMLAFAAQ 259 (300)
Q Consensus 181 tl~~l~~~a~~~a~~~~~~~~n~~~~~~~Da~~GADivmVkPsmm~ld~Ir~~~d~-~~~vpi~aY~vSgeY~~~r~Aa~ 259 (300)
|++.+.+. +++|||+||+-+ |-++-++++.+. -+++||.+=
T Consensus 217 tlee~~eA----------------------~~aGaD~I~ld~--~~~e~l~~~v~~~~~~~~I~AS-------------- 258 (296)
T 1qap_A 217 NLDELDDA----------------------LKAGADIIMLDN--FNTDQMREAVKRVNGQARLEVS-------------- 258 (296)
T ss_dssp SHHHHHHH----------------------HHTTCSEEEESS--CCHHHHHHHHHTTCTTCCEEEC--------------
T ss_pred CHHHHHHH----------------------HHcCCCEEEECC--CCHHHHHHHHHHhCCCCeEEEE--------------
Q ss_pred CCCCCHHHHHHHHHHHHHHcCCCEEEe
Q psy15126 260 AGALDLKRALMETLTCLRRGGADVIIS 286 (300)
Q Consensus 260 ~~~~n~~eal~E~~~~~~r~GAD~Ii~ 286 (300)
|-+| .|.+..+.+.|+|.|-|
T Consensus 259 -GGIt-----~~~i~~~a~~GvD~isv 279 (296)
T 1qap_A 259 -GNVT-----AETLREFAETGVDFISV 279 (296)
T ss_dssp -CCSC-----HHHHHHHHHTTCSEEEC
T ss_pred -CCCC-----HHHHHHHHHcCCCEEEE
No 285
>2yzr_A Pyridoxal biosynthesis lyase PDXS; redox protein, pyridoxal phosphate, structural genomi NPPSFA; 2.30A {Methanocaldococcus jannaschii}
Probab=44.95 E-value=69 Score=30.48 Aligned_cols=76 Identities=20% Similarity=0.120 Sum_probs=48.0
Q ss_pred hhcCCceeecc-C-----------cch-HHHHHHHHHhhCCCCCEEeEecccccHHHHHH--HhCCCCC---------H-
Q psy15126 211 VSQGADFLMVK-P-----------ALP-YLDIISEVKSRHPAYPLFVYQVSGEYAMLAFA--AQAGALD---------L- 265 (300)
Q Consensus 211 a~~GADivmVk-P-----------smm-~ld~Ir~~~d~~~~vpi~aY~vSgeY~~~r~A--a~~~~~n---------~- 265 (300)
.++||+.||+- | +.| -.+.|+++++.- ++||+.=---|.+...+-. +..+.++ .
T Consensus 34 e~aGA~aI~~l~~v~~d~~~~~G~arm~~p~~i~~I~~av-~iPV~~K~rig~~~e~qilea~GaD~Id~s~~l~p~d~~ 112 (330)
T 2yzr_A 34 EEAGAVAVMALERVPADIRAAGGVARMSDPALIEEIMDAV-SIPVMAKCRIGHTTEALVLEAIGVDMIDESEVLTQADPF 112 (330)
T ss_dssp HHHTCSEEEECSSCHHHHC--CCCCCCCCHHHHHHHHHHC-SSCEEEEEETTCHHHHHHHHHTTCSEEEEETTSCCSCSS
T ss_pred HHcCCCEEEecCCccccccCCcchhhcCCHHHHHHHHHhc-CCCeEEEEeecchHHHHHHHHcCCCEEehhccCCHHHHH
Confidence 57899999884 2 122 567777777774 7999976545543332222 1122211 1
Q ss_pred H---------------HHHHHHHHHHHHcCCCEEEecc
Q psy15126 266 K---------------RALMETLTCLRRGGADVIISYY 288 (300)
Q Consensus 266 ~---------------eal~E~~~~~~r~GAD~Ii~y~ 288 (300)
. .-+-|.++.+ .+||++|-|+.
T Consensus 113 ~~i~k~~~~~~~~~~a~~lgea~r~~-~~Ga~~i~t~g 149 (330)
T 2yzr_A 113 FHIYKKKFNVPFVCGARNLGEAVRRI-WEGAAMIRTKG 149 (330)
T ss_dssp CCCCGGGCSSCEEEECSSHHHHHHHH-HHTCSEEEECC
T ss_pred HHhhhhhcccchhhccccHHHHHHHH-hcCcceeeccC
Confidence 0 0267788888 79999999998
No 286
>3to5_A CHEY homolog; alpha(5)beta(5), chemotaxis, FLIM, phosphorylation, motor AC signaling protein; 1.65A {Vibrio cholerae}
Probab=44.83 E-value=62 Score=25.68 Aligned_cols=57 Identities=12% Similarity=0.327 Sum_probs=36.5
Q ss_pred CCceeecc---CcchHHHHHHHHHhh--CCCCCEEeEecccccHHHHHHHhCCCCCHHHHHHHHHHHHHHcCCCEEEecc
Q psy15126 214 GADFLMVK---PALPYLDIISEVKSR--HPAYPLFVYQVSGEYAMLAFAAQAGALDLKRALMETLTCLRRGGADVIISYY 288 (300)
Q Consensus 214 GADivmVk---Psmm~ld~Ir~~~d~--~~~vpi~aY~vSgeY~~~r~Aa~~~~~n~~eal~E~~~~~~r~GAD~Ii~y~ 288 (300)
--|+|+.- |.|-=++.+|+++.. ++++||+..+..+. . + +....+ ++|||-.++||
T Consensus 57 ~~DlillD~~MP~mdG~el~~~ir~~~~~~~ipvI~lTa~~~--------------~-~---~~~~~~-~~Ga~~yl~KP 117 (134)
T 3to5_A 57 DFDFVVTDWNMPGMQGIDLLKNIRADEELKHLPVLMITAEAK--------------R-E---QIIEAA-QAGVNGYIVKP 117 (134)
T ss_dssp CCSEEEEESCCSSSCHHHHHHHHHHSTTTTTCCEEEEESSCC--------------H-H---HHHHHH-HTTCCEEEESS
T ss_pred CCCEEEEcCCCCCCCHHHHHHHHHhCCCCCCCeEEEEECCCC--------------H-H---HHHHHH-HCCCCEEEECC
Confidence 34666544 444357888888753 68899999865222 1 1 112234 68999999998
Q ss_pred h
Q psy15126 289 T 289 (300)
Q Consensus 289 A 289 (300)
-
T Consensus 118 ~ 118 (134)
T 3to5_A 118 F 118 (134)
T ss_dssp C
T ss_pred C
Confidence 3
No 287
>3tdn_A FLR symmetric alpha-beta TIM barrel; symmetric superfold, de novo protein; 1.40A {Synthetic construct} PDB: 3og3_A 3tdm_A
Probab=44.81 E-value=54 Score=28.01 Aligned_cols=33 Identities=15% Similarity=0.212 Sum_probs=23.3
Q ss_pred hhcCCceeecc---Cc----chHHHHHHHHHhhCCCCCEEe
Q psy15126 211 VSQGADFLMVK---PA----LPYLDIISEVKSRHPAYPLFV 244 (300)
Q Consensus 211 a~~GADivmVk---Ps----mm~ld~Ir~~~d~~~~vpi~a 244 (300)
.++|+|.|.|- .+ ...++.|+++++.+ ++|+.+
T Consensus 45 ~~~G~~~i~v~d~~~~~~~~~~~~~~i~~i~~~~-~ipvi~ 84 (247)
T 3tdn_A 45 EKRGAGEILLTSIDRDGTKSGYDTEMIRFVRPLT-TLPIIA 84 (247)
T ss_dssp HHTTCSEEEEEETTTTTCSSCCCHHHHHHHGGGC-CSCEEE
T ss_pred HHcCCCEEEEEecCcccCCCcccHHHHHHHHHhC-CCCEEE
Confidence 46788877552 11 12588999999886 799876
No 288
>4avf_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase; 2.23A {Pseudomonas aeruginosa}
Probab=44.32 E-value=75 Score=30.77 Aligned_cols=67 Identities=21% Similarity=0.227 Sum_probs=40.1
Q ss_pred CCccccchhhhcCCceeecc--Cc------------chHHHHHHHHHhh--CCCCCEEeEecccccHHHHHHHhCCCCCH
Q psy15126 202 NTDRFQARDVSQGADFLMVK--PA------------LPYLDIISEVKSR--HPAYPLFVYQVSGEYAMLAFAAQAGALDL 265 (300)
Q Consensus 202 n~~~~~~~Da~~GADivmVk--Ps------------mm~ld~Ir~~~d~--~~~vpi~aY~vSgeY~~~r~Aa~~~~~n~ 265 (300)
.|-.....=+++|||.|.|. |+ .+.+..|+++.+. -.++||++=. |..+.
T Consensus 279 ~t~e~a~~l~~aGaD~I~vg~g~Gs~~~t~~~~g~g~p~~~~l~~v~~~~~~~~iPVIa~G--------------GI~~~ 344 (490)
T 4avf_A 279 ATAEAAKALAEAGADAVKVGIGPGSICTTRIVAGVGVPQISAIANVAAALEGTGVPLIADG--------------GIRFS 344 (490)
T ss_dssp CSHHHHHHHHHTTCSEEEECSSCSTTCHHHHHTCBCCCHHHHHHHHHHHHTTTTCCEEEES--------------CCCSH
T ss_pred CcHHHHHHHHHcCCCEEEECCCCCcCCCccccCCCCccHHHHHHHHHHHhccCCCcEEEeC--------------CCCCH
Confidence 33344444467999999872 22 2356677777663 1379998741 33454
Q ss_pred HHHHHHHHHHHHHcCCCEEEec
Q psy15126 266 KRALMETLTCLRRGGADVIISY 287 (300)
Q Consensus 266 ~eal~E~~~~~~r~GAD~Ii~y 287 (300)
.++ .+.+ .+|||.+|+-
T Consensus 345 ~di----~kal-~~GAd~V~vG 361 (490)
T 4avf_A 345 GDL----AKAM-VAGAYCVMMG 361 (490)
T ss_dssp HHH----HHHH-HHTCSEEEEC
T ss_pred HHH----HHHH-HcCCCeeeec
Confidence 332 2344 5799999974
No 289
>2ayx_A Sensor kinase protein RCSC; two independent structural domains, transferase; NMR {Escherichia coli} SCOP: c.23.1.1 c.23.1.6 PDB: 2ayz_A 2ayy_A
Probab=44.24 E-value=1.3e+02 Score=25.25 Aligned_cols=59 Identities=15% Similarity=0.250 Sum_probs=38.9
Q ss_pred hcCCceeecc---CcchHHHHHHHHHhhCCCCCEEeEecccccHHHHHHHhCCCCCHHHHHHHHHHHHHHcCCCEEEecc
Q psy15126 212 SQGADFLMVK---PALPYLDIISEVKSRHPAYPLFVYQVSGEYAMLAFAAQAGALDLKRALMETLTCLRRGGADVIISYY 288 (300)
Q Consensus 212 ~~GADivmVk---Psmm~ld~Ir~~~d~~~~vpi~aY~vSgeY~~~r~Aa~~~~~n~~eal~E~~~~~~r~GAD~Ii~y~ 288 (300)
+..-|+|++- |.|--++.++++++..+++||+..+....- .+....+ +.||+-.++||
T Consensus 171 ~~~~dlvl~D~~mp~~~G~~l~~~ir~~~~~~piI~lt~~~~~------------------~~~~~~~-~~G~~~~l~KP 231 (254)
T 2ayx_A 171 KNHIDIVLSDVNMPNMDGYRLTQRIRQLGLTLPVIGVTANALA------------------EEKQRCL-ESGMDSCLSKP 231 (254)
T ss_dssp HSCCSEEEEEESSCSSCCHHHHHHHHHHHCCSCEEEEESSTTS------------------HHHHHHH-HCCCEEEEESS
T ss_pred hCCCCEEEEcCCCCCCCHHHHHHHHHhcCCCCcEEEEECCCCH------------------HHHHHHH-HcCCceEEECC
Confidence 3456888765 444457888888877778999999652211 1112234 68998888988
Q ss_pred h
Q psy15126 289 T 289 (300)
Q Consensus 289 A 289 (300)
-
T Consensus 232 ~ 232 (254)
T 2ayx_A 232 V 232 (254)
T ss_dssp C
T ss_pred C
Confidence 3
No 290
>2oqr_A Sensory transduction protein REGX3; response regulator, winged-helix-turn-helix, DNA-binding, 3D swapping, two component system; 2.03A {Mycobacterium tuberculosis H37RV}
Probab=44.22 E-value=42 Score=27.06 Aligned_cols=63 Identities=16% Similarity=0.352 Sum_probs=40.5
Q ss_pred hcCCceeeccCcch---HHHHHHHHHhhCCCCCEEeEecccccHHHHHHHhCC-------CCCHHHHHHHHHHHH
Q psy15126 212 SQGADFLMVKPALP---YLDIISEVKSRHPAYPLFVYQVSGEYAMLAFAAQAG-------ALDLKRALMETLTCL 276 (300)
Q Consensus 212 ~~GADivmVkPsmm---~ld~Ir~~~d~~~~vpi~aY~vSgeY~~~r~Aa~~~-------~~n~~eal~E~~~~~ 276 (300)
+...|+|++--.|+ -++.++++++. +++||+..+..........+.+.| +.+.+ .+.+.+..+
T Consensus 46 ~~~~dlvllD~~l~~~~g~~~~~~l~~~-~~~~ii~lt~~~~~~~~~~~~~~ga~~~l~Kp~~~~-~l~~~i~~~ 118 (230)
T 2oqr_A 46 RAGADIVLLDLMLPGMSGTDVCKQLRAR-SSVPVIMVTARDSEIDKVVGLELGADDYVTKPYSAR-ELIARIRAV 118 (230)
T ss_dssp HHCCSEEEEESSCSSSCHHHHHHHHHHH-CSCSEEEEECCHHHHHHHHHHHHCCSCCCCSSCCHH-HHHHHHHHH
T ss_pred ccCCCEEEEECCCCCCCHHHHHHHHHcC-CCCCEEEEeCCCcHHHHHHHHHcCCCEEEeCCCCHH-HHHHHHHHH
Confidence 34578888765443 67888888875 789999997755555555555543 34443 344555444
No 291
>2ftp_A Hydroxymethylglutaryl-COA lyase; structural genomics, PSI, protein structure initiativ midwest center for structural genomics, MCSG; 2.40A {Pseudomonas aeruginosa}
Probab=43.88 E-value=63 Score=29.03 Aligned_cols=36 Identities=17% Similarity=0.015 Sum_probs=26.6
Q ss_pred hhcCCceeeccCc----ch--HHHHHHHHHhhCCCCCEEeEe
Q psy15126 211 VSQGADFLMVKPA----LP--YLDIISEVKSRHPAYPLFVYQ 246 (300)
Q Consensus 211 a~~GADivmVkPs----mm--~ld~Ir~~~d~~~~vpi~aY~ 246 (300)
.+.|||.|.++=. .| .-+.|+++++.+|++||-.+.
T Consensus 169 ~~~G~d~i~l~DT~G~~~P~~~~~lv~~l~~~~~~~~l~~H~ 210 (302)
T 2ftp_A 169 QQMGCYEVSLGDTIGVGTAGATRRLIEAVASEVPRERLAGHF 210 (302)
T ss_dssp HHTTCSEEEEEESSSCCCHHHHHHHHHHHTTTSCGGGEEEEE
T ss_pred HHcCCCEEEEeCCCCCcCHHHHHHHHHHHHHhCCCCeEEEEe
Confidence 5789999976622 22 578888888888788887664
No 292
>1ub3_A Aldolase protein; schiff base, deoxyribose phosphate, carbinolamine, structural genomics, riken structural genomics/proteomics initiative; HET: HPD; 1.40A {Thermus thermophilus} SCOP: c.1.10.1 PDB: 1j2w_A*
Probab=43.63 E-value=1.3e+02 Score=26.45 Aligned_cols=60 Identities=17% Similarity=0.172 Sum_probs=36.5
Q ss_pred hcCCceeeccCcchHHHHHHHHHhhCCCCCEEeEecccccHHHHHHHhCCCCCHHHHHHHHHHHHHHcCCCEEE
Q psy15126 212 SQGADFLMVKPALPYLDIISEVKSRHPAYPLFVYQVSGEYAMLAFAAQAGALDLKRALMETLTCLRRGGADVII 285 (300)
Q Consensus 212 ~~GADivmVkPsmm~ld~Ir~~~d~~~~vpi~aY~vSgeY~~~r~Aa~~~~~n~~eal~E~~~~~~r~GAD~Ii 285 (300)
+-|++.|+|-|++ +...++.+.. .+++|.+- .|| -.|..+.+.-+.|+...+ +.|||-|-
T Consensus 30 ~~~~~aVcv~p~~--v~~~~~~l~~-~~v~v~~v--igF--------P~G~~~~~~k~~e~~~Ai-~~GAdevd 89 (220)
T 1ub3_A 30 EYGFYGLCIPPSY--VAWVRARYPH-APFRLVTV--VGF--------PLGYQEKEVKALEAALAC-ARGADEVD 89 (220)
T ss_dssp HHTCSEEECCGGG--HHHHHHHCTT-CSSEEEEE--EST--------TTCCSCHHHHHHHHHHHH-HTTCSEEE
T ss_pred HhCCCEEEECHHH--HHHHHHHhCC-CCceEEEE--ecC--------CCCCCchHHHHHHHHHHH-HcCCCEEE
Confidence 3489999999984 4444455543 24555444 344 123335556677777777 68888763
No 293
>1dc7_A NTRC, nitrogen regulation protein; receiver domain, phosphorylation, signal transduction, conformational rearrangement; NMR {Salmonella typhimurium} SCOP: c.23.1.1 PDB: 1j56_A 1krw_A 1krx_A 1ntr_A 1dc8_A*
Probab=43.49 E-value=5.4 Score=28.45 Aligned_cols=35 Identities=26% Similarity=0.606 Sum_probs=25.2
Q ss_pred cCCceeeccCcch---HHHHHHHHHhhCCCCCEEeEec
Q psy15126 213 QGADFLMVKPALP---YLDIISEVKSRHPAYPLFVYQV 247 (300)
Q Consensus 213 ~GADivmVkPsmm---~ld~Ir~~~d~~~~vpi~aY~v 247 (300)
...|+|++-..|+ -++.++++++.++++|++..+.
T Consensus 46 ~~~dlvi~d~~~~~~~g~~~~~~l~~~~~~~~ii~~s~ 83 (124)
T 1dc7_A 46 KTPDVLLSDIRMPGMDGLALLKQIKQRHPMLPVIIMTA 83 (124)
T ss_dssp CCCSCEEECSCSSHHHHCSTHHHHHHHCTTSCCCCBCC
T ss_pred CCCCEEEEeeecCCCCHHHHHHHHHhhCCCCCEEEEec
Confidence 4578988876654 3456777777778899988854
No 294
>3eq2_A Probable two-component response regulator; adaptor sigmas, signaling protein; 3.40A {Pseudomonas aeruginosa} PDB: 3f7a_A
Probab=42.65 E-value=60 Score=29.13 Aligned_cols=48 Identities=15% Similarity=0.148 Sum_probs=31.0
Q ss_pred CCCCccccchhhhcCCceeeccCcc---hHHHHHHHHHhhCCCCCEEeEec
Q psy15126 200 NHNTDRFQARDVSQGADFLMVKPAL---PYLDIISEVKSRHPAYPLFVYQV 247 (300)
Q Consensus 200 ~~n~~~~~~~Da~~GADivmVkPsm---m~ld~Ir~~~d~~~~vpi~aY~v 247 (300)
-+|.......-.+..-|+|++--.| -=++.++++++.++++||+..+.
T Consensus 35 a~~~~~al~~~~~~~~dlvllD~~mp~~~G~~~~~~lr~~~~~~pii~lt~ 85 (394)
T 3eq2_A 35 ALNGLQGLQIFESEQPDLVICDLRMPQIDGLELIRRIRQTASETPIIVLSG 85 (394)
T ss_dssp CSSHHHHHHHHHHSCCSEEEECCCSSSSCTHHHHHHHHHTTCCCCEEEC--
T ss_pred ECCHHHHHHHHhhCCCCEEEEcCCCCCCCHHHHHHHHHhhCCCCcEEEEEc
Confidence 3443333333334557888776444 46889999998888999998854
No 295
>3nav_A Tryptophan synthase alpha chain; alpha subunit, structural genomics, CSG center for structural genomics of infectious diseases; 2.10A {Vibrio cholerae o1 biovar el tor} SCOP: c.1.2.4
Probab=42.53 E-value=24 Score=32.14 Aligned_cols=43 Identities=14% Similarity=0.050 Sum_probs=32.3
Q ss_pred HHHHHHHHHcCCCccccCCCCcchHHHHHHHHhhCCCCCCcccc
Q psy15126 68 ADISKAFSDAGAHIVAPSDMMDNRIHAIKQSLFTSRQSSTTGLL 111 (300)
Q Consensus 68 ~~~A~~~A~aGad~vAPSdmMDgrv~air~aLd~~g~~~~v~Im 111 (300)
-+-+..++++|+|.+-..|.-.......++.+.+.|+ ..+.++
T Consensus 115 ~~f~~~~~~aGvdGvIipDlp~ee~~~~~~~~~~~gl-~~I~lv 157 (271)
T 3nav_A 115 DDFYQRCQKAGVDSVLIADVPTNESQPFVAAAEKFGI-QPIFIA 157 (271)
T ss_dssp HHHHHHHHHHTCCEEEETTSCGGGCHHHHHHHHHTTC-EEEEEE
T ss_pred HHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHcCC-eEEEEE
Confidence 4456667889999866667777778889999999998 444444
No 296
>2e6f_A Dihydroorotate dehydrogenase; chagas disease, pyrimidine biosynthesis, fumarate reductase, energy metabolism, redox homeostasis, flavoprotein; HET: FMN OXC; 1.26A {Trypanosoma cruzi} PDB: 2e6a_A* 2e6d_A* 2e68_A* 2djl_A* 2djx_A* 3c3n_A* 2b4g_A* 3c61_A* 3mhu_A* 3mjy_A*
Probab=42.29 E-value=64 Score=28.58 Aligned_cols=47 Identities=17% Similarity=0.156 Sum_probs=30.4
Q ss_pred HHHHHHHHHhhCCCCCEEeEecccccHHHHHHHhCCCCCHHHHHHHHHHHHHHcCCCEEEecchHH
Q psy15126 226 YLDIISEVKSRHPAYPLFVYQVSGEYAMLAFAAQAGALDLKRALMETLTCLRRGGADVIISYYTPR 291 (300)
Q Consensus 226 ~ld~Ir~~~d~~~~vpi~aY~vSgeY~~~r~Aa~~~~~n~~eal~E~~~~~~r~GAD~Ii~y~A~~ 291 (300)
.++.|+++++..+++||++=. |..+.+++ .|. + ++|||.|++.-+.-
T Consensus 231 ~~~~i~~v~~~~~~ipvi~~G--------------GI~~~~da-~~~---l-~~GAd~V~ig~~~l 277 (314)
T 2e6f_A 231 ALANVNAFYRRCPDKLVFGCG--------------GVYSGEDA-FLH---I-LAGASMVQVGTALQ 277 (314)
T ss_dssp HHHHHHHHHHHCTTSEEEEES--------------SCCSHHHH-HHH---H-HHTCSSEEECHHHH
T ss_pred HHHHHHHHHHhcCCCCEEEEC--------------CCCCHHHH-HHH---H-HcCCCEEEEchhhH
Confidence 368888888776678987641 33344333 333 3 47999999876543
No 297
>3noy_A 4-hydroxy-3-methylbut-2-EN-1-YL diphosphate synth; iron-sulfur protein, non-mevalonate pathway, terpene biosynt isoprenoid biosynthesis; 2.70A {Aquifex aeolicus}
Probab=41.80 E-value=1e+02 Score=29.84 Aligned_cols=73 Identities=15% Similarity=0.270 Sum_probs=51.9
Q ss_pred hhcCCceeecc-CcchHHHHHHHHHhhCCCCCEEeEecccccHHHHHHHhCC-------CCCH--HHHHHHHHHHHHHcC
Q psy15126 211 VSQGADFLMVK-PALPYLDIISEVKSRHPAYPLFVYQVSGEYAMLAFAAQAG-------ALDL--KRALMETLTCLRRGG 280 (300)
Q Consensus 211 a~~GADivmVk-Psmm~ld~Ir~~~d~~~~vpi~aY~vSgeY~~~r~Aa~~~-------~~n~--~eal~E~~~~~~r~G 280 (300)
+++|+|||=|. |++--..++++++++. ++|+.+= ..-.|.....|++.| |-|. ++-+.|.....++.|
T Consensus 56 ~~aG~diVRvavp~~~~a~al~~I~~~~-~vPlvaD-iHf~~~lal~a~e~G~dklRINPGNig~~~~~~~vv~~ak~~~ 133 (366)
T 3noy_A 56 YEAGCEIVRVAVPHKEDVEALEEIVKKS-PMPVIAD-IHFAPSYAFLSMEKGVHGIRINPGNIGKEEIVREIVEEAKRRG 133 (366)
T ss_dssp HHTTCCEEEEECCSHHHHHHHHHHHHHC-SSCEEEE-CCSCHHHHHHHHHTTCSEEEECHHHHSCHHHHHHHHHHHHHHT
T ss_pred HHcCCCEEEeCCCChHHHHHHHHHHhcC-CCCEEEe-CCCCHHHHHHHHHhCCCeEEECCcccCchhHHHHHHHHHHHcC
Confidence 79999999543 4444778888888886 7999876 223677777777753 2222 556778888888888
Q ss_pred CCEEE
Q psy15126 281 ADVII 285 (300)
Q Consensus 281 AD~Ii 285 (300)
.-+-|
T Consensus 134 ~piRI 138 (366)
T 3noy_A 134 VAVRI 138 (366)
T ss_dssp CEEEE
T ss_pred CCEEE
Confidence 87766
No 298
>2qzj_A Two-component response regulator; 11017X, PSI-II, structural genomics; 2.89A {Clostridium difficile}
Probab=41.79 E-value=1e+02 Score=22.67 Aligned_cols=58 Identities=16% Similarity=0.223 Sum_probs=37.7
Q ss_pred hcCCceeeccCcch---HHHHHHHHHhhCCCCCEEeEecccccHHHHHHHhCCCCCHHHHHHHHHHHHHHcCCCEEEecc
Q psy15126 212 SQGADFLMVKPALP---YLDIISEVKSRHPAYPLFVYQVSGEYAMLAFAAQAGALDLKRALMETLTCLRRGGADVIISYY 288 (300)
Q Consensus 212 ~~GADivmVkPsmm---~ld~Ir~~~d~~~~vpi~aY~vSgeY~~~r~Aa~~~~~n~~eal~E~~~~~~r~GAD~Ii~y~ 288 (300)
+...|+|++-..|+ -++.++++++.. .+||+..+....- + .....+ +.||+-.+.||
T Consensus 46 ~~~~dlvllD~~l~~~~g~~l~~~l~~~~-~~~ii~ls~~~~~---------------~---~~~~~~-~~ga~~~l~KP 105 (136)
T 2qzj_A 46 SNKYDLIFLEIILSDGDGWTLCKKIRNVT-TCPIVYMTYINED---------------Q---SILNAL-NSGGDDYLIKP 105 (136)
T ss_dssp HCCCSEEEEESEETTEEHHHHHHHHHTTC-CCCEEEEESCCCH---------------H---HHHHHH-HTTCCEEEESS
T ss_pred hcCCCEEEEeCCCCCCCHHHHHHHHccCC-CCCEEEEEcCCCH---------------H---HHHHHH-HcCCcEEEECC
Confidence 44579998876544 688889888765 7999888542221 1 112233 57888888887
Q ss_pred h
Q psy15126 289 T 289 (300)
Q Consensus 289 A 289 (300)
-
T Consensus 106 ~ 106 (136)
T 2qzj_A 106 L 106 (136)
T ss_dssp C
T ss_pred C
Confidence 3
No 299
>3tha_A Tryptophan synthase alpha chain; structural genomics, center for structural genomics of infec diseases, csgid, lyase; 2.37A {Campylobacter jejuni}
Probab=41.16 E-value=10 Score=34.50 Aligned_cols=70 Identities=16% Similarity=0.300 Sum_probs=0.0
Q ss_pred hHhHHHHHHHHHhhhcccccCCCCCccccchhhhcCCceeeccCcchH---------------------------HHHHH
Q psy15126 179 EKTLKRLADISKAFSDAVYVPNHNTDRFQARDVSQGADFLMVKPALPY---------------------------LDIIS 231 (300)
Q Consensus 179 d~tl~~l~~~a~~~a~~~~~~~~n~~~~~~~Da~~GADivmVkPsmm~---------------------------ld~Ir 231 (300)
|++++...++.... .+.|||+| .=++|| ++.++
T Consensus 24 ~P~~~~t~~~~~~l------------------~~~GaD~i--ElGiPfSDP~aDGpvIq~a~~rAL~~g~~~~~~~~~~~ 83 (252)
T 3tha_A 24 YPNLQTSEAFLQRL------------------DQSPIDIL--ELGVAYSDPIADGEIIADAAKIALDQGVDIHSVFELLA 83 (252)
T ss_dssp SSCHHHHHHHHHTG------------------GGSSCSEE--EEECCCSCCCSCCCHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHH------------------HHcCCCEE--EECCCCCCCCCCcHHHHHHHHHHHHCCCCHHHHHHHHH
Q ss_pred HHHhhCCCCCEEeEecccccHHHHHHHhCCCCCH--HHHHHHHHHHHHHcCCCEEEe
Q psy15126 232 EVKSRHPAYPLFVYQVSGEYAMLAFAAQAGALDL--KRALMETLTCLRRGGADVIIS 286 (300)
Q Consensus 232 ~~~d~~~~vpi~aY~vSgeY~~~r~Aa~~~~~n~--~eal~E~~~~~~r~GAD~Ii~ 286 (300)
+++.+.| +-+|.| .|. +-.+-.-..+++++|+|-+|+
T Consensus 84 ~~r~~~P-ivlm~Y-----------------~N~i~~~G~e~F~~~~~~aGvdG~Ii 122 (252)
T 3tha_A 84 RIKTKKA-LVFMVY-----------------YNLIFSYGLEKFVKKAKSLGICALIV 122 (252)
T ss_dssp HCCCSSE-EEEECC-----------------HHHHHHHCHHHHHHHHHHTTEEEEEC
T ss_pred HHhcCCC-EEEEec-----------------cCHHHHhhHHHHHHHHHHcCCCEEEe
No 300
>3l12_A Putative glycerophosphoryl diester phosphodiester; struct genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE; 1.60A {Silicibacter pomeroyi}
Probab=41.13 E-value=61 Score=28.95 Aligned_cols=64 Identities=17% Similarity=0.257 Sum_probs=45.2
Q ss_pred hcCCceeeccCc--chHHHHHHHHHhhCCCCCEEeEecccccHHHHHHHhCCCCCHHHHHHHHHHHHHHcCCCEEEecch
Q psy15126 212 SQGADFLMVKPA--LPYLDIISEVKSRHPAYPLFVYQVSGEYAMLAFAAQAGALDLKRALMETLTCLRRGGADVIISYYT 289 (300)
Q Consensus 212 ~~GADivmVkPs--mm~ld~Ir~~~d~~~~vpi~aY~vSgeY~~~r~Aa~~~~~n~~eal~E~~~~~~r~GAD~Ii~y~A 289 (300)
+.|++++ .|. ...-..|+++++. +++|.+|.| |..+ .+..+.+.|+|.|||-+-
T Consensus 243 ~~~~~~~--~~~~~~~~~~~v~~~~~~--Gl~V~~WTV----------------n~~~----~~~~l~~~GVDgIiTD~P 298 (313)
T 3l12_A 243 SAGGQLW--CPYFLDVTPELVAEAHDL--GLIVLTWTV----------------NEPE----DIRRMATTGVDGIVTDYP 298 (313)
T ss_dssp HHTCSEE--EEBGGGCCHHHHHHHHHT--TCEEEEBCC----------------CSHH----HHHHHHHHTCSEEEESCH
T ss_pred HhCCcEE--ecchhcCCHHHHHHHHHC--CCEEEEEcC----------------CCHH----HHHHHHHcCCCEEEeCCH
Confidence 4578888 665 3345678887775 799999987 4432 223333569999999988
Q ss_pred HHHHHHHhhC
Q psy15126 290 PRVLEWLRED 299 (300)
Q Consensus 290 ~~~ld~l~~~ 299 (300)
..+.++|++.
T Consensus 299 ~~~~~~l~~~ 308 (313)
T 3l12_A 299 GRTQRILIDM 308 (313)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHhc
Confidence 8888888753
No 301
>3glc_A Aldolase LSRF; TIM barrel, lyase, schiff base; HET: R5P; 2.50A {Escherichia coli} PDB: 3gnd_A* 3gkf_O
Probab=41.12 E-value=52 Score=30.32 Aligned_cols=30 Identities=13% Similarity=0.225 Sum_probs=19.4
Q ss_pred hhcCCceeeccCcchHHHHHHHHHhhCCCCCEEe
Q psy15126 211 VSQGADFLMVKPALPYLDIISEVKSRHPAYPLFV 244 (300)
Q Consensus 211 a~~GADivmVkPsmm~ld~Ir~~~d~~~~vpi~a 244 (300)
.+.|||+| |-+.+ -+.++++.+.. .+||.+
T Consensus 199 ~elGAD~V--Kt~~t-~e~~~~vv~~~-~vPVv~ 228 (295)
T 3glc_A 199 AEMGAQII--KTYYV-EKGFERIVAGC-PVPIVI 228 (295)
T ss_dssp HHTTCSEE--EEECC-TTTHHHHHHTC-SSCEEE
T ss_pred HHhCCCEE--EeCCC-HHHHHHHHHhC-CCcEEE
Confidence 57899999 54422 13456666665 589874
No 302
>2d69_A Ribulose bisphosphate carboxylase; alpha/beta barrel, structural genomics, NPPSFA, national Pro protein structural and functional analyses; 1.90A {Pyrococcus horikoshii} SCOP: c.1.14.1 d.58.9.1 PDB: 2cxe_A 2cwx_A
Probab=40.98 E-value=58 Score=31.91 Aligned_cols=69 Identities=17% Similarity=0.254 Sum_probs=39.2
Q ss_pred hhcCCceeeccCcch---HHHHHHHHHhhCCCCCEEeEecccccHHHHHHHhCCCCCHHHHHHHHHHHHHHcCCCEEEec
Q psy15126 211 VSQGADFLMVKPALP---YLDIISEVKSRHPAYPLFVYQVSGEYAMLAFAAQAGALDLKRALMETLTCLRRGGADVIISY 287 (300)
Q Consensus 211 a~~GADivmVkPsmm---~ld~Ir~~~d~~~~vpi~aY~vSgeY~~~r~Aa~~~~~n~~eal~E~~~~~~r~GAD~Ii~y 287 (300)
.+.|+.++||.+-.- -+..+|+.... .++||.++-+ ..|.+-.-.+.|. +. .++ -.+..+ +|||.|.+-
T Consensus 242 ~e~G~~~~mvd~~~~G~~a~~~l~~~~r~-~~l~lh~HrA--~hga~~r~~~~Gi-~~-~Vl-~Kl~RL--aGaD~ih~g 313 (430)
T 2d69_A 242 ANEGGQYVMIDIVVAGWSALQYMREVTED-LGLAIHAHRA--MHAAFTRNPRHGI-TM-LAL-AKAARM--IGVDQIHTG 313 (430)
T ss_dssp HHHTCCEEEEEHHHHCHHHHHHHHHHHHH-HTCEEEEECT--TTHHHHSCTTSEE-CH-HHH-HHHHHH--HTCSEEECC
T ss_pred HHcCCCeEEEEeeccChHHHHHHHHHhhc-cCcEEEeccC--CccccccCCCCCC-cH-HHH-HHHHHH--hCCCccccc
Confidence 678999999988533 33444443223 4899999965 3333322112232 22 233 334444 799999864
No 303
>1zcc_A Glycerophosphodiester phosphodiesterase; NYSGXRC, agrobacterium tumefaciens STR. C58, structural genomics; 2.50A {Agrobacterium tumefaciens str} SCOP: c.1.18.3
Probab=40.82 E-value=46 Score=28.76 Aligned_cols=62 Identities=13% Similarity=0.041 Sum_probs=42.0
Q ss_pred hcCCceeeccCcchH---HHHHHHHHhhCCCCCEEeEecccccHHHHHHHhCCCCCHHHHHHHHHHH-HHHcCCCEEEec
Q psy15126 212 SQGADFLMVKPALPY---LDIISEVKSRHPAYPLFVYQVSGEYAMLAFAAQAGALDLKRALMETLTC-LRRGGADVIISY 287 (300)
Q Consensus 212 ~~GADivmVkPsmm~---ld~Ir~~~d~~~~vpi~aY~vSgeY~~~r~Aa~~~~~n~~eal~E~~~~-~~r~GAD~Ii~y 287 (300)
+.|++.+ .|.... -..|+++++. ++++.+|.| |..+. +.. +.+.|+|.|+|-
T Consensus 168 ~~~~~~i--~~~~~~~~~~~~v~~~~~~--G~~v~~wTv----------------n~~~~----~~~~l~~~GvdgIiTD 223 (248)
T 1zcc_A 168 VHHASII--EITPAQMRRPGIIEASRKA--GLEIMVYYG----------------GDDMA----VHREIATSDVDYINLD 223 (248)
T ss_dssp TTCCSEE--EECHHHHHSHHHHHHHHHH--TCEEEEECC----------------CCCHH----HHHHHHHSSCSEEEES
T ss_pred HcCCCEE--EecHHHhCCHHHHHHHHHC--CCEEEEECC----------------CCHHH----HHHHHHHcCCCEEEEC
Confidence 5788888 665333 4677777775 689999977 33222 223 335799999998
Q ss_pred chHHHHHHHh
Q psy15126 288 YTPRVLEWLR 297 (300)
Q Consensus 288 ~A~~~ld~l~ 297 (300)
+-..+.++++
T Consensus 224 ~p~~~~~~~~ 233 (248)
T 1zcc_A 224 RPDLFAAVRS 233 (248)
T ss_dssp CHHHHHHHHH
T ss_pred CHHHHHHHHH
Confidence 8777666665
No 304
>2yw3_A 4-hydroxy-2-oxoglutarate aldolase/2-deydro-3- deoxyphosphogluconate aldolase; structural genomics, NPPSFA; 1.67A {Thermus thermophilus} PDB: 2yw4_A
Probab=40.80 E-value=24 Score=30.21 Aligned_cols=35 Identities=17% Similarity=0.238 Sum_probs=27.5
Q ss_pred hhcCCceeeccCcch--HHHHHHHHHhhCCCCCEEeE
Q psy15126 211 VSQGADFLMVKPALP--YLDIISEVKSRHPAYPLFVY 245 (300)
Q Consensus 211 a~~GADivmVkPsmm--~ld~Ir~~~d~~~~vpi~aY 245 (300)
.++|||+|.+-|+-. =++.+++++..++++|+++=
T Consensus 121 ~~~Gad~v~~fpa~~~gG~~~lk~l~~~~~~ipvvai 157 (207)
T 2yw3_A 121 LALGLSALKFFPAEPFQGVRVLRAYAEVFPEVRFLPT 157 (207)
T ss_dssp HHTTCCEEEETTTTTTTHHHHHHHHHHHCTTCEEEEB
T ss_pred HHCCCCEEEEecCccccCHHHHHHHHhhCCCCcEEEe
Confidence 578999999999632 35778888877888999865
No 305
>2ekc_A AQ_1548, tryptophan synthase alpha chain; structural genomics, lyase, NPPSFA, national project on PROT structural and functional analyses; 2.00A {Aquifex aeolicus}
Probab=40.64 E-value=34 Score=30.26 Aligned_cols=36 Identities=8% Similarity=0.060 Sum_probs=25.6
Q ss_pred HHHHHHHHcCCCccccCCCCcchHHHHHHHHhhCCC
Q psy15126 69 DISKAFSDAGAHIVAPSDMMDNRIHAIKQSLFTSRQ 104 (300)
Q Consensus 69 ~~A~~~A~aGad~vAPSdmMDgrv~air~aLd~~g~ 104 (300)
+-+..++++|++-+-..|.....+....+.+.+.|+
T Consensus 113 ~f~~~~~~aG~dgvii~dl~~ee~~~~~~~~~~~gl 148 (262)
T 2ekc_A 113 KFCRLSREKGIDGFIVPDLPPEEAEELKAVMKKYVL 148 (262)
T ss_dssp HHHHHHHHTTCCEEECTTCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHcCCCEEEECCCCHHHHHHHHHHHHHcCC
Confidence 344556788999444446666778888888888888
No 306
>2qjg_A Putative aldolase MJ0400; beta-alpha barrel, lyase; HET: F2P; 2.60A {Methanocaldococcus jannaschii} PDB: 2qjh_A 2qji_A
Probab=40.57 E-value=1.4e+02 Score=25.67 Aligned_cols=78 Identities=15% Similarity=0.114 Sum_probs=40.4
Q ss_pred hhcCCcee--eccC-cch---HHHHHHHHHh---hCCCCCEEeEecccccHHHHHHHhCCCCCHHHHHHHHHHHHHHcCC
Q psy15126 211 VSQGADFL--MVKP-ALP---YLDIISEVKS---RHPAYPLFVYQVSGEYAMLAFAAQAGALDLKRALMETLTCLRRGGA 281 (300)
Q Consensus 211 a~~GADiv--mVkP-smm---~ld~Ir~~~d---~~~~vpi~aY~vSgeY~~~r~Aa~~~~~n~~eal~E~~~~~~r~GA 281 (300)
++.|||.| .+-+ +.. .+..++++.+ ++ ++|++.... -.|. . .+.+ .+. +-+.|......+.||
T Consensus 109 ~~~Ga~~v~~~l~~~~~~~~~~~~~~~~v~~~~~~~-g~~viv~~~--~~G~--~-l~~~-~~~-~~~~~~a~~a~~~Ga 180 (273)
T 2qjg_A 109 IRMGADAVSIHVNVGSDEDWEAYRDLGMIAETCEYW-GMPLIAMMY--PRGK--H-IQNE-RDP-ELVAHAARLGAELGA 180 (273)
T ss_dssp HHTTCSEEEEEEEETSTTHHHHHHHHHHHHHHHHHH-TCCEEEEEE--ECST--T-CSCT-TCH-HHHHHHHHHHHHTTC
T ss_pred HHcCCCEEEEEEecCCCCHHHHHHHHHHHHHHHHHc-CCCEEEEeC--CCCc--c-cCCC-CCH-hHHHHHHHHHHHcCC
Confidence 67899999 3222 222 3444444443 35 788887631 1010 0 0112 233 344555344447999
Q ss_pred CEEEecc--hHHHHHHH
Q psy15126 282 DVIISYY--TPRVLEWL 296 (300)
Q Consensus 282 D~Ii~y~--A~~~ld~l 296 (300)
|+|-+.| ..+.+..+
T Consensus 181 d~i~~~~~~~~~~l~~i 197 (273)
T 2qjg_A 181 DIVKTSYTGDIDSFRDV 197 (273)
T ss_dssp SEEEECCCSSHHHHHHH
T ss_pred CEEEECCCCCHHHHHHH
Confidence 9998886 33444433
No 307
>1ypf_A GMP reductase; GUAC, purines, pyrimidines, nucleosides, nucleotides, nucleo nucleoside interconversions, spine, structural genomics; 1.80A {Bacillus anthracis} PDB: 2a1y_A*
Probab=40.53 E-value=78 Score=28.89 Aligned_cols=60 Identities=18% Similarity=0.151 Sum_probs=39.0
Q ss_pred chhhhcCCceeec--cCcc------------h--HHHHHHHHHhhCCCCCEEeEecccccHHHHHHHhCCCCCHHHHHHH
Q psy15126 208 ARDVSQGADFLMV--KPAL------------P--YLDIISEVKSRHPAYPLFVYQVSGEYAMLAFAAQAGALDLKRALME 271 (300)
Q Consensus 208 ~~Da~~GADivmV--kPsm------------m--~ld~Ir~~~d~~~~vpi~aY~vSgeY~~~r~Aa~~~~~n~~eal~E 271 (300)
.+=+++|||.|.| .|+. + .+..+.++++.. ++||++= =|..+..+
T Consensus 164 ~~a~~aGad~Ivvs~hgG~~~~~~~~~~~g~~g~~~~~l~~v~~~~-~ipVIa~--------------GGI~~g~D---- 224 (336)
T 1ypf_A 164 RELENAGADATKVGIGPGKVCITKIKTGFGTGGWQLAALRWCAKAA-SKPIIAD--------------GGIRTNGD---- 224 (336)
T ss_dssp HHHHHHTCSEEEECSSCSTTCHHHHHHSCSSTTCHHHHHHHHHHTC-SSCEEEE--------------SCCCSTHH----
T ss_pred HHHHHcCCCEEEEecCCCceeecccccCcCCchhHHHHHHHHHHHc-CCcEEEe--------------CCCCCHHH----
Confidence 3346799999988 3421 1 477888888765 7888763 13445533
Q ss_pred HHHHHHHcCCCEEEec
Q psy15126 272 TLTCLRRGGADVIISY 287 (300)
Q Consensus 272 ~~~~~~r~GAD~Ii~y 287 (300)
+++.+ ..|||.+++-
T Consensus 225 v~kal-alGAdaV~iG 239 (336)
T 1ypf_A 225 VAKSI-RFGATMVMIG 239 (336)
T ss_dssp HHHHH-HTTCSEEEES
T ss_pred HHHHH-HcCCCEEEeC
Confidence 33455 4799999874
No 308
>1ydo_A HMG-COA lyase; TIM-barrel protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG,; 2.71A {Bacillus subtilis subsp}
Probab=40.46 E-value=36 Score=31.09 Aligned_cols=35 Identities=17% Similarity=0.230 Sum_probs=25.3
Q ss_pred hhcCCceeeccCc----ch--HHHHHHHHHhhCCCCCEEeE
Q psy15126 211 VSQGADFLMVKPA----LP--YLDIISEVKSRHPAYPLFVY 245 (300)
Q Consensus 211 a~~GADivmVkPs----mm--~ld~Ir~~~d~~~~vpi~aY 245 (300)
.+.|||.|.++=. .| .-+.|+.+++.+|++||-.+
T Consensus 167 ~~~Ga~~i~l~DT~G~~~P~~v~~lv~~l~~~~~~~~l~~H 207 (307)
T 1ydo_A 167 FEFGISELSLGDTIGAANPAQVETVLEALLARFPANQIALH 207 (307)
T ss_dssp HHHTCSCEEEECSSCCCCHHHHHHHHHHHHTTSCGGGEEEE
T ss_pred HhcCCCEEEEcCCCCCcCHHHHHHHHHHHHHhCCCCeEEEE
Confidence 5789999876633 22 56788888888877887554
No 309
>2qv0_A Protein MRKE; structural genomics, transcription, PSI-2, protein structure initiative; 2.40A {Klebsiella pneumoniae}
Probab=39.91 E-value=70 Score=23.40 Aligned_cols=57 Identities=7% Similarity=-0.075 Sum_probs=37.7
Q ss_pred hcCCceeeccCcc---hHHHHHHHHHhhCCCCCEEeEecccccHHHHHHHhCCCCCHHHHHHHHHHHHHHcCCCEEEecc
Q psy15126 212 SQGADFLMVKPAL---PYLDIISEVKSRHPAYPLFVYQVSGEYAMLAFAAQAGALDLKRALMETLTCLRRGGADVIISYY 288 (300)
Q Consensus 212 ~~GADivmVkPsm---m~ld~Ir~~~d~~~~vpi~aY~vSgeY~~~r~Aa~~~~~n~~eal~E~~~~~~r~GAD~Ii~y~ 288 (300)
+...|+|++--.+ .-++.++++++..+..||+..+...+ +....+ +.||+-.+.||
T Consensus 53 ~~~~dlvi~d~~l~~~~g~~~~~~l~~~~~~~~ii~~s~~~~--------------------~~~~~~-~~g~~~~l~KP 111 (143)
T 2qv0_A 53 HNKVDAIFLDINIPSLDGVLLAQNISQFAHKPFIVFITAWKE--------------------HAVEAF-ELEAFDYILKP 111 (143)
T ss_dssp HCCCSEEEECSSCSSSCHHHHHHHHTTSTTCCEEEEEESCCT--------------------THHHHH-HTTCSEEEESS
T ss_pred hCCCCEEEEecCCCCCCHHHHHHHHHccCCCceEEEEeCCHH--------------------HHHHHH-hCCcceEEeCC
Confidence 3457999887554 36888999888776777887743211 011233 68888888887
Q ss_pred h
Q psy15126 289 T 289 (300)
Q Consensus 289 A 289 (300)
.
T Consensus 112 ~ 112 (143)
T 2qv0_A 112 Y 112 (143)
T ss_dssp C
T ss_pred C
Confidence 3
No 310
>3i65_A Dihydroorotate dehydrogenase homolog, mitochondrial; triazolopyrimidine,inhibitor, DSM1, FAD, flavoprotein, membrane, mitochondrion; HET: JZ8 FMN ORO LDA; 2.00A {Plasmodium falciparum 3D7} PDB: 3i68_A* 3i6r_A* 3o8a_A* 3sfk_A*
Probab=39.84 E-value=65 Score=31.25 Aligned_cols=48 Identities=21% Similarity=0.229 Sum_probs=31.8
Q ss_pred HHHHHHHHHhhCC-CCCEEeEecccccHHHHHHHhCCCCCHHHHHHHHHHHHHHcCCCEEEecchHHH
Q psy15126 226 YLDIISEVKSRHP-AYPLFVYQVSGEYAMLAFAAQAGALDLKRALMETLTCLRRGGADVIISYYTPRV 292 (300)
Q Consensus 226 ~ld~Ir~~~d~~~-~vpi~aY~vSgeY~~~r~Aa~~~~~n~~eal~E~~~~~~r~GAD~Ii~y~A~~~ 292 (300)
-++.|+++++... ++||++= =|..+.++| .| .+ ++|||.|+++-+.-+
T Consensus 331 al~~I~~v~~~v~~~iPIIg~--------------GGI~s~eDa-~e---~l-~aGAd~VqIgra~l~ 379 (415)
T 3i65_A 331 STKFICEMYNYTNKQIPIIAS--------------GGIFSGLDA-LE---KI-EAGASVCQLYSCLVF 379 (415)
T ss_dssp HHHHHHHHHHHTTTCSCEEEC--------------SSCCSHHHH-HH---HH-HHTEEEEEESHHHHH
T ss_pred HHHHHHHHHHHhCCCCCEEEE--------------CCCCCHHHH-HH---HH-HcCCCEEEEcHHHHh
Confidence 4688888888743 6898864 134455433 33 34 479999999887643
No 311
>2cw6_A Hydroxymethylglutaryl-COA lyase, mitochondrial; HMG-COA lyase, ketogenic enzyme; HET: 3HG; 2.10A {Homo sapiens} PDB: 3mp3_A* 3mp4_A 3mp5_A*
Probab=39.46 E-value=59 Score=29.12 Aligned_cols=35 Identities=26% Similarity=0.256 Sum_probs=25.0
Q ss_pred hhcCCceeeccCc----ch--HHHHHHHHHhhCCCCCEEeE
Q psy15126 211 VSQGADFLMVKPA----LP--YLDIISEVKSRHPAYPLFVY 245 (300)
Q Consensus 211 a~~GADivmVkPs----mm--~ld~Ir~~~d~~~~vpi~aY 245 (300)
.+.|||.|.++=. .| +-+.|+.+++.+|++||-.+
T Consensus 166 ~~~Ga~~i~l~DT~G~~~P~~~~~lv~~l~~~~~~~~i~~H 206 (298)
T 2cw6_A 166 YSMGCYEISLGDTIGVGTPGIMKDMLSAVMQEVPLAALAVH 206 (298)
T ss_dssp HHTTCSEEEEEETTSCCCHHHHHHHHHHHHHHSCGGGEEEE
T ss_pred HHcCCCEEEecCCCCCcCHHHHHHHHHHHHHhCCCCeEEEE
Confidence 5789999866532 22 57788888888877887554
No 312
>3ru6_A Orotidine 5'-phosphate decarboxylase; structural genomics, center for structural genomics of infec diseases (csgid), TIM-barrel; 1.80A {Campylobacter jejuni subsp}
Probab=39.11 E-value=90 Score=29.04 Aligned_cols=104 Identities=15% Similarity=0.134 Sum_probs=58.0
Q ss_pred HHHHHHH--HHhhhcccccCCCCCccccc-hhhhcCCceeeccCcch--HHHHHHHHHhhCCCCCEEeEec----ccccH
Q psy15126 182 LKRLADI--SKAFSDAVYVPNHNTDRFQA-RDVSQGADFLMVKPALP--YLDIISEVKSRHPAYPLFVYQV----SGEYA 252 (300)
Q Consensus 182 l~~l~~~--a~~~a~~~~~~~~n~~~~~~-~Da~~GADivmVkPsmm--~ld~Ir~~~d~~~~vpi~aY~v----SgeY~ 252 (300)
++.|.+. -..|+|.=..|..||-.-.. .=++.|||+|.|-|.+- .+....+..+.+..-| .-+.| |--=.
T Consensus 68 V~~Lk~~~g~~IflDlKl~DIpnTv~~av~~~a~lGaD~vTVHa~~G~~~m~aa~e~a~~~~~~~-~llaVtvLTS~s~~ 146 (303)
T 3ru6_A 68 IEELKKVDDFKIFLDLKFHDIPNTMADACEEVSKLGVDMINIHASAGKIAIQEVMTRLSKFSKRP-LVLAVSALTSFDEE 146 (303)
T ss_dssp HHHHHHHCCCEEEEEEEECSCHHHHHHHHHHHHTTTCSEEEEEGGGCHHHHHHHHHHHTTSSSCC-EEEEECSCTTCCHH
T ss_pred HHHHHHhhCCCEEEEeeeccCchhHHHHHHHHHhcCCCEEEEeccCCHHHHHHHHHHHHhcCCCc-eEEEEEEecCCCHH
Confidence 4445444 34566666666677654222 22467999999999743 4555555554443223 22322 21111
Q ss_pred HHHHHHhCCCCCHHHHHHHHHHHHHHcCCCEEEecch
Q psy15126 253 MLAFAAQAGALDLKRALMETLTCLRRGGADVIISYYT 289 (300)
Q Consensus 253 ~~r~Aa~~~~~n~~eal~E~~~~~~r~GAD~Ii~y~A 289 (300)
-++.-.+ .+..+.+.+....-++.|.|-++..+.
T Consensus 147 ~l~~l~~---~~~~e~V~~lA~~a~~~G~dGvV~s~~ 180 (303)
T 3ru6_A 147 NFFSIYR---QKIEEAVINFSKISYENGLDGMVCSVF 180 (303)
T ss_dssp HHHHHHS---SCHHHHHHHHHHHHHHTTCSEEECCTT
T ss_pred HHHHHHc---CCHHHHHHHHHHHHHHcCCCEEEECHH
Confidence 2222111 366777777777766789999888654
No 313
>1dz3_A Stage 0 sporulation protein A; response regulator, domain swapping; 1.65A {Bacillus stearothermophilus} SCOP: c.23.1.1 PDB: 1qmp_A*
Probab=39.07 E-value=80 Score=22.74 Aligned_cols=58 Identities=14% Similarity=0.204 Sum_probs=36.6
Q ss_pred hcCCceeeccCcc---hHHHHHHHHHhh-CCCCCEEeEecccccHHHHHHHhCCCCCHHHHHHHHHHHHHHcCCCEEEec
Q psy15126 212 SQGADFLMVKPAL---PYLDIISEVKSR-HPAYPLFVYQVSGEYAMLAFAAQAGALDLKRALMETLTCLRRGGADVIISY 287 (300)
Q Consensus 212 ~~GADivmVkPsm---m~ld~Ir~~~d~-~~~vpi~aY~vSgeY~~~r~Aa~~~~~n~~eal~E~~~~~~r~GAD~Ii~y 287 (300)
+...|+|++--.| .-++.++++++. .+..||+..+.+..... ....+ +.||+-.+.|
T Consensus 46 ~~~~dlvllD~~l~~~~g~~~~~~l~~~~~~~~~ii~ls~~~~~~~------------------~~~~~-~~ga~~~l~K 106 (130)
T 1dz3_A 46 EKRPDILLLDIIMPHLDGLAVLERIRAGFEHQPNVIMLTAFGQEDV------------------TKKAV-ELGASYFILK 106 (130)
T ss_dssp HHCCSEEEEESCCSSSCHHHHHHHHHHHCSSCCEEEEEEETTCHHH------------------HHHHH-HTTCEEEEEC
T ss_pred cCCCCEEEEecCCCCCCHHHHHHHHHhcCCCCCcEEEEecCCCHHH------------------HHHHH-HcCCCEEEeC
Confidence 3456888876444 367888888875 56788888754322211 11233 5788888888
Q ss_pred c
Q psy15126 288 Y 288 (300)
Q Consensus 288 ~ 288 (300)
|
T Consensus 107 P 107 (130)
T 1dz3_A 107 P 107 (130)
T ss_dssp S
T ss_pred C
Confidence 7
No 314
>1nvm_A HOA, 4-hydroxy-2-oxovalerate aldolase; sequestered tunnel, substrate channeling; HET: NAD; 1.70A {Pseudomonas SP} SCOP: a.5.7.1 c.1.10.5
Probab=39.06 E-value=60 Score=29.79 Aligned_cols=26 Identities=19% Similarity=0.259 Sum_probs=20.7
Q ss_pred ecHHhHHHHHHHHHHHHHcCCCcccc
Q psy15126 59 HYEKTLKRLADISKAFSDAGAHIVAP 84 (300)
Q Consensus 59 ~nd~Tl~~l~~~A~~~A~aGad~vAP 84 (300)
....|.+...+++..+.++|++.|--
T Consensus 24 ~~~~~~e~k~~i~~~L~~~Gvd~IEv 49 (345)
T 1nvm_A 24 RHQYTLDDVRAIARALDKAKVDSIEV 49 (345)
T ss_dssp TTCCCHHHHHHHHHHHHHHTCSEEEC
T ss_pred CCCCCHHHHHHHHHHHHHcCCCEEEE
Confidence 44577888888888888899888766
No 315
>1q7z_A 5-methyltetrahydrofolate S-homocysteine methyltransferase; methionine, cobalamin, vitamin B12; 1.70A {Thermotoga maritima} SCOP: c.1.21.2 c.1.26.1 PDB: 1q7q_A 1q7m_A 1q85_A 1q8a_A 1q8j_A* 3bof_A 3bol_A
Probab=39.01 E-value=1.1e+02 Score=30.42 Aligned_cols=46 Identities=13% Similarity=0.204 Sum_probs=37.4
Q ss_pred CceecHHhHHHHHHHHHHHHHcCCCcccc-CCCCcchHHHHHHHHhh
Q psy15126 56 GSIHYEKTLKRLADISKAFSDAGAHIVAP-SDMMDNRIHAIKQSLFT 101 (300)
Q Consensus 56 g~i~nd~Tl~~l~~~A~~~A~aGad~vAP-SdmMDgrv~air~aLd~ 101 (300)
+....+.|-+.+++.+..+.++|+.+|.= ...-+-.|.+++++|..
T Consensus 243 ~~~~~~~~p~~~a~~~~~~~~~G~~iiGGCCGTtP~hI~aia~~~~~ 289 (566)
T 1q7z_A 243 GKTVYPLKPHDFAVHIDSYYELGVNIFGGCCGTTPEHVKLFRKVLGN 289 (566)
T ss_dssp TEEECCCCHHHHHTTHHHHHHTTCSEECCCTTCCHHHHHHHHHHHCS
T ss_pred CccccCCCHHHHHHHHHHHHHcCCcEEccccCCCHHHHHHHHHHhcC
Confidence 44445567788999999999999999876 66777889999999953
No 316
>1wdd_A Ribulose bisphosphate carboxylase large chain; rubisco, photosynthesis, alpha/beta barrel, N-methylmethioni translational modification, lyase; HET: KCX CAP; 1.35A {Oryza sativa} SCOP: c.1.14.1 d.58.9.1 PDB: 3axk_A* 3axm_A* 1rlc_L* 4rub_A* 3rub_L 1ej7_L 1aa1_L* 1aus_L 1rbo_L* 1rco_L* 1rcx_L* 1rxo_L* 1gk8_A* 1ir2_A* 1uzd_A* 1uzh_A* 2v69_A* 1uwa_A* 2v63_A* 2v67_A* ...
Probab=39.01 E-value=38 Score=33.65 Aligned_cols=41 Identities=10% Similarity=0.114 Sum_probs=29.8
Q ss_pred HHhHHHHHHHHHHHHHcCCCccc--------cCCCCcchHHHHHHHHhh
Q psy15126 61 EKTLKRLADISKAFSDAGAHIVA--------PSDMMDNRIHAIKQSLFT 101 (300)
Q Consensus 61 d~Tl~~l~~~A~~~A~aGad~vA--------PSdmMDgrv~air~aLd~ 101 (300)
-.|.+.+++++.+++..|.|.|= |-.-+.-|+....++++.
T Consensus 179 GLs~~~~a~~~ye~~~GGlDfiKDDE~l~~qpf~p~~eR~~~v~eai~r 227 (477)
T 1wdd_A 179 GLSAKNYGRACYECLRGGLDFTKDDENVNSQPFMRWRDRFVFCAEAIYK 227 (477)
T ss_dssp CCCHHHHHHHHHHHHHTTCSEEECCTTCSSBTTBCHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHhcCCceeeCCccCCCCCCCcHHHHHHHHHHHHHH
Confidence 36889999999999999999872 233445666655555554
No 317
>2q5c_A NTRC family transcriptional regulator; structural genomics, protein structure initiative; HET: SO4 GOL; 1.49A {Clostridium acetobutylicum atcc 824}
Probab=38.49 E-value=36 Score=28.97 Aligned_cols=72 Identities=7% Similarity=0.031 Sum_probs=46.0
Q ss_pred CCceeeccCcch-HHHHHHHHHhhCCCCCEEeEec-ccccHHHHHHHhCC-----CCCHHHHHHHHHHHHHHcCCCEEEe
Q psy15126 214 GADFLMVKPALP-YLDIISEVKSRHPAYPLFVYQV-SGEYAMLAFAAQAG-----ALDLKRALMETLTCLRRGGADVIIS 286 (300)
Q Consensus 214 GADivmVkPsmm-~ld~Ir~~~d~~~~vpi~aY~v-SgeY~~~r~Aa~~~-----~~n~~eal~E~~~~~~r~GAD~Ii~ 286 (300)
+.=+|.+++|-. .+.++.++++...++-+..|.- .....-+....+.+ +-+.+|+ .+.+..++++|.++|+-
T Consensus 70 ~iPVV~I~~s~~Dil~al~~a~~~~~kIavvg~~~~~~~~~~~~~ll~~~i~~~~~~~~~e~-~~~i~~l~~~G~~vvVG 148 (196)
T 2q5c_A 70 SIPSISIKVTRFDTMRAVYNAKRFGNELALIAYKHSIVDKHEIEAMLGVKIKEFLFSSEDEI-TTLISKVKTENIKIVVS 148 (196)
T ss_dssp SSCEEEECCCHHHHHHHHHHHGGGCSEEEEEEESSCSSCHHHHHHHHTCEEEEEEECSGGGH-HHHHHHHHHTTCCEEEE
T ss_pred CCCEEEEcCCHhHHHHHHHHHHhhCCcEEEEeCcchhhHHHHHHHHhCCceEEEEeCCHHHH-HHHHHHHHHCCCeEEEC
Confidence 345666677743 7777777777666788888854 22223344444332 3344444 77888999999999875
No 318
>1thf_D HISF protein; thermophIle, TIM-barrel, histidine biosynthesis, lyase, phosphate-binding sites; 1.45A {Thermotoga maritima} SCOP: c.1.2.1 PDB: 2wjz_A 2a0n_A* 1gpw_A 1vh7_A 2rkx_A 3iio_A 3iip_A* 3iiv_A
Probab=38.29 E-value=1.2e+02 Score=25.65 Aligned_cols=34 Identities=21% Similarity=0.253 Sum_probs=23.3
Q ss_pred hhcCCceeecc-Cc------chHHHHHHHHHhhCCCCCEEeE
Q psy15126 211 VSQGADFLMVK-PA------LPYLDIISEVKSRHPAYPLFVY 245 (300)
Q Consensus 211 a~~GADivmVk-Ps------mm~ld~Ir~~~d~~~~vpi~aY 245 (300)
.++|||.|-|- +. ...++.|+++++.+ ++|+..-
T Consensus 40 ~~~Gad~i~v~d~~~~~~~~~~~~~~i~~i~~~~-~ipvi~~ 80 (253)
T 1thf_D 40 SEIGIDELVFLDITASVEKRKTMLELVEKVAEQI-DIPFTVG 80 (253)
T ss_dssp HHTTCCEEEEEESSCSSSHHHHHHHHHHHHHTTC-CSCEEEE
T ss_pred HHcCCCEEEEECCchhhcCCcccHHHHHHHHHhC-CCCEEEe
Confidence 57899887432 11 12588889998865 7999874
No 319
>2p10_A MLL9387 protein; putative phosphonopyruvate hydrolase, structural genomics, J center for structural genomics, JCSG; HET: MSE; 2.15A {Mesorhizobium loti} SCOP: c.1.12.9
Probab=38.23 E-value=28 Score=32.59 Aligned_cols=68 Identities=16% Similarity=0.211 Sum_probs=49.1
Q ss_pred hhcCCceeeccCcc-hHHHHHHHHHhhCCCCCEEeEecccccHHHHHHHhCC------CCCHHHHHHHHHHHHHHcCCCE
Q psy15126 211 VSQGADFLMVKPAL-PYLDIISEVKSRHPAYPLFVYQVSGEYAMLAFAAQAG------ALDLKRALMETLTCLRRGGADV 283 (300)
Q Consensus 211 a~~GADivmVkPsm-m~ld~Ir~~~d~~~~vpi~aY~vSgeY~~~r~Aa~~~------~~n~~eal~E~~~~~~r~GAD~ 283 (300)
.++|+.-|.==|.. ..-+..|+.++++. |.| +-|..|++.|-++| ..|.++|- .+-++|+|+
T Consensus 118 k~~Gf~Gv~N~ptvglidG~fr~~LEE~g----m~~--~~eve~I~~A~~~gL~Ti~~v~~~eeA~-----amA~agpDi 186 (286)
T 2p10_A 118 KEIGFAGVQNFPTVGLIDGLFRQNLEETG----MSY--AQEVEMIAEAHKLDLLTTPYVFSPEDAV-----AMAKAGADI 186 (286)
T ss_dssp HHHTCCEEEECSCGGGCCHHHHHHHHHTT----CCH--HHHHHHHHHHHHTTCEECCEECSHHHHH-----HHHHHTCSE
T ss_pred HHhCCceEEECCCcccccchhhhhHhhcC----CCH--HHHHHHHHHHHHCCCeEEEecCCHHHHH-----HHHHcCCCE
Confidence 46788777666763 35577888888764 556 66889999998887 34665553 334689999
Q ss_pred EEecch
Q psy15126 284 IISYYT 289 (300)
Q Consensus 284 Ii~y~A 289 (300)
|.+.|.
T Consensus 187 I~~h~g 192 (286)
T 2p10_A 187 LVCHMG 192 (286)
T ss_dssp EEEECS
T ss_pred EEECCC
Confidence 999997
No 320
>3o1n_A 3-dehydroquinate dehydratase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel, lyase; 1.03A {Salmonella enterica subsp} PDB: 3s42_A 3l2i_A* 3lb0_A 4guf_A 4gug_A* 4guh_A* 3nnt_A* 4guj_A* 3m7w_A 3oex_A 4gfs_A* 4gui_A* 1gqn_A 1l9w_A* 1qfe_A*
Probab=37.99 E-value=50 Score=29.96 Aligned_cols=40 Identities=25% Similarity=0.392 Sum_probs=26.0
Q ss_pred hhcCCceeeccCc-ch--------HHHHHHHHHhhCCCCCEEeEecccccHH
Q psy15126 211 VSQGADFLMVKPA-LP--------YLDIISEVKSRHPAYPLFVYQVSGEYAM 253 (300)
Q Consensus 211 a~~GADivmVkPs-mm--------~ld~Ir~~~d~~~~vpi~aY~vSgeY~~ 253 (300)
.+.|||++ |=+ |+ -+.+.+++++.+++.|+.+|+- |+.|.
T Consensus 186 ~~~GaDIv--Kia~~a~s~~Dvl~Ll~~~~~~~~~~~~~PlIa~~M-G~~G~ 234 (276)
T 3o1n_A 186 QELGADIP--KIAVMPQTKADVLTLLTATVEMQERYADRPIITMSM-SKTGV 234 (276)
T ss_dssp HHTTCSEE--EEEECCSSHHHHHHHHHHHHHHHHHTCCSCCEEEEC-SGGGT
T ss_pred HHcCCCEE--EEEecCCChHHHHHHHHHHHHHHhcCCCCCEEEEEC-CCchh
Confidence 46799998 655 32 2333444555567899999975 66653
No 321
>3daq_A DHDPS, dihydrodipicolinate synthase; lysine biosynthesis, amino-ACI biosynthesis, diaminopimelate biosynthesis, lyase, schiff B; 1.45A {Staphylococcus aureus} SCOP: c.1.10.0 PDB: 3di1_A 3di0_A
Probab=37.75 E-value=44 Score=30.04 Aligned_cols=36 Identities=19% Similarity=0.383 Sum_probs=26.4
Q ss_pred hhcCCceeeccCcc---h----HHHHHHHHHhhCCCCCEEeEec
Q psy15126 211 VSQGADFLMVKPAL---P----YLDIISEVKSRHPAYPLFVYQV 247 (300)
Q Consensus 211 a~~GADivmVkPsm---m----~ld~Ir~~~d~~~~vpi~aY~v 247 (300)
.+.|||.+||-|-. + -++..+++.+.. ++||+-|++
T Consensus 94 ~~~Gadavlv~~P~y~~~~~~~l~~~f~~ia~a~-~lPiilYn~ 136 (292)
T 3daq_A 94 KALGADAIMLITPYYNKTNQRGLVKHFEAIADAV-KLPVVLYNV 136 (292)
T ss_dssp HHHTCSEEEEECCCSSCCCHHHHHHHHHHHHHHH-CSCEEEEEC
T ss_pred HHcCCCEEEECCCCCCCCCHHHHHHHHHHHHHhC-CCCEEEEec
Confidence 45799999887531 1 456666766765 799999997
No 322
>1jub_A Dihydroorotate dehydrogenase A; homodimer, alpha-beta barrel, flavoprotein, mutant enzyme, oxidoreductase; HET: FMN; 1.40A {Lactococcus lactis} SCOP: c.1.4.1 PDB: 1ovd_A* 1jue_A* 1dor_A* 2bsl_A* 2bx7_A* 2dor_A* 1jqv_A* 1jrb_A* 1jrc_A* 1jqx_A*
Probab=37.69 E-value=1.1e+02 Score=27.00 Aligned_cols=46 Identities=17% Similarity=0.088 Sum_probs=29.8
Q ss_pred HHHHHHHHhhCC-CCCEEeEecccccHHHHHHHhCCCCCHHHHHHHHHHHHHHcCCCEEEecchHH
Q psy15126 227 LDIISEVKSRHP-AYPLFVYQVSGEYAMLAFAAQAGALDLKRALMETLTCLRRGGADVIISYYTPR 291 (300)
Q Consensus 227 ld~Ir~~~d~~~-~vpi~aY~vSgeY~~~r~Aa~~~~~n~~eal~E~~~~~~r~GAD~Ii~y~A~~ 291 (300)
++.|+++++..+ ++||++=. |..+.+++ .|. + ++|||.|++.-+.-
T Consensus 229 ~~~i~~v~~~~~~~ipvi~~G--------------GI~~~~da-~~~---l-~~GAd~V~vg~~~l 275 (311)
T 1jub_A 229 LANVRAFYTRLKPEIQIIGTG--------------GIETGQDA-FEH---L-LCGATMLQIGTALH 275 (311)
T ss_dssp HHHHHHHHTTSCTTSEEEEES--------------SCCSHHHH-HHH---H-HHTCSEEEECHHHH
T ss_pred HHHHHHHHHhcCCCCCEEEEC--------------CCCCHHHH-HHH---H-HcCCCEEEEchHHH
Confidence 678888887743 78887641 34454433 333 3 47999999986643
No 323
>2pju_A Propionate catabolism operon regulatory protein; structural genomics, PRPR, transcriptional regulation, PSI- 2, protein structure initiative; 2.10A {Escherichia coli} SCOP: c.92.3.1
Probab=37.67 E-value=46 Score=29.35 Aligned_cols=71 Identities=10% Similarity=0.183 Sum_probs=42.8
Q ss_pred CceeeccCcch-HHHHHHHHHhhCCCCCEEeEec-ccccHHHHHHHhCC-----CCCHHHHHHHHHHHHHHcCCCEEEe
Q psy15126 215 ADFLMVKPALP-YLDIISEVKSRHPAYPLFVYQV-SGEYAMLAFAAQAG-----ALDLKRALMETLTCLRRGGADVIIS 286 (300)
Q Consensus 215 ADivmVkPsmm-~ld~Ir~~~d~~~~vpi~aY~v-SgeY~~~r~Aa~~~-----~~n~~eal~E~~~~~~r~GAD~Ii~ 286 (300)
.=+|.+++|-. .|.++.++++....+-+..|.- .....-+....+.+ +.+.+ =+.+.+..++++|.++|+-
T Consensus 83 iPVV~I~vs~~Dil~aL~~a~~~~~kIavVg~~~~~~~~~~i~~ll~~~i~~~~~~~~e-e~~~~i~~l~~~G~~vVVG 160 (225)
T 2pju_A 83 VPVILIKPSGYDVLQFLAKAGKLTSSIGVVTYQETIPALVAFQKTFNLRLDQRSYITEE-DARGQINELKANGTEAVVG 160 (225)
T ss_dssp SCEEEECCCHHHHHHHHHHTTCTTSCEEEEEESSCCHHHHHHHHHHTCCEEEEEESSHH-HHHHHHHHHHHTTCCEEEE
T ss_pred CCEEEecCCHHHHHHHHHHHHhhCCcEEEEeCchhhhHHHHHHHHhCCceEEEEeCCHH-HHHHHHHHHHHCCCCEEEC
Confidence 44555666633 5666666666556778888854 11222233333332 33444 4488899999999999875
No 324
>4fo4_A Inosine 5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.03A {Vibrio cholerae o1 biovar el tor} PDB: 4ff0_A* 4hlv_A* 4fez_A
Probab=37.64 E-value=88 Score=29.50 Aligned_cols=59 Identities=15% Similarity=0.231 Sum_probs=36.7
Q ss_pred hhhcCCceeecc--Cc------------chHHHHHHHHHhh--CCCCCEEeEecccccHHHHHHHhCCCCCHHHHHHHHH
Q psy15126 210 DVSQGADFLMVK--PA------------LPYLDIISEVKSR--HPAYPLFVYQVSGEYAMLAFAAQAGALDLKRALMETL 273 (300)
Q Consensus 210 Da~~GADivmVk--Ps------------mm~ld~Ir~~~d~--~~~vpi~aY~vSgeY~~~r~Aa~~~~~n~~eal~E~~ 273 (300)
-.++|||+|.|. |+ .+.+..|+++.+. ..++||++=. |..+..+ ..
T Consensus 166 a~~aGAD~I~vG~gpGs~~~tr~~~g~g~p~~~~l~~v~~~~~~~~iPVIA~G--------------GI~~~~d----i~ 227 (366)
T 4fo4_A 166 LIEAGVSAVKVGIGPGSICTTRIVTGVGVPQITAIADAAGVANEYGIPVIADG--------------GIRFSGD----IS 227 (366)
T ss_dssp HHHHTCSEEEECSSCSTTBCHHHHHCCCCCHHHHHHHHHHHHGGGTCCEEEES--------------CCCSHHH----HH
T ss_pred HHHcCCCEEEEecCCCCCCCcccccCcccchHHHHHHHHHHHhhcCCeEEEeC--------------CCCCHHH----HH
Confidence 367899999883 43 2356666666542 2479988741 3335433 33
Q ss_pred HHHHHcCCCEEEec
Q psy15126 274 TCLRRGGADVIISY 287 (300)
Q Consensus 274 ~~~~r~GAD~Ii~y 287 (300)
..+ ..|||.|++-
T Consensus 228 kal-a~GAd~V~vG 240 (366)
T 4fo4_A 228 KAI-AAGASCVMVG 240 (366)
T ss_dssp HHH-HTTCSEEEES
T ss_pred HHH-HcCCCEEEEC
Confidence 445 5899999863
No 325
>2gwr_A DNA-binding response regulator MTRA; two-component regulatory system, transcription regulation, phosphorylation, OMPR family; 2.10A {Mycobacterium tuberculosis} PDB: 3nhz_A
Probab=37.22 E-value=72 Score=26.13 Aligned_cols=49 Identities=10% Similarity=0.282 Sum_probs=33.9
Q ss_pred hcCCceeeccCcc---hHHHHHHHHHhhCCCCCEEeEecccccHHHHHHHhCC
Q psy15126 212 SQGADFLMVKPAL---PYLDIISEVKSRHPAYPLFVYQVSGEYAMLAFAAQAG 261 (300)
Q Consensus 212 ~~GADivmVkPsm---m~ld~Ir~~~d~~~~vpi~aY~vSgeY~~~r~Aa~~~ 261 (300)
+...|+|++--.| .-++.++++++.. ++||+..+..........+.+.|
T Consensus 47 ~~~~dlvilD~~l~~~~g~~~~~~lr~~~-~~~ii~lt~~~~~~~~~~~~~~G 98 (238)
T 2gwr_A 47 ELRPDLVLLDLMLPGMNGIDVCRVLRADS-GVPIVMLTAKTDTVDVVLGLESG 98 (238)
T ss_dssp HHCCSEEEEESSCSSSCHHHHHHHHHTTC-CCCEEEEEETTCCSCHHHHHHTT
T ss_pred hCCCCEEEEeCCCCCCCHHHHHHHHHhCC-CCcEEEEeCCCCHHHHHHHHHCC
Confidence 4467998876544 3688888888764 89999997755555555555544
No 326
>3c2e_A Nicotinate-nucleotide pyrophosphorylase; qprtase, prtase, BNA6, mechanism, cytoplasm, glycosyltransferase, nucleus; 1.90A {Saccharomyces cerevisiae} PDB: 3c2f_A* 3c2o_A* 3c2v_A* 3c2r_A*
Probab=36.79 E-value=28 Score=31.86 Aligned_cols=66 Identities=15% Similarity=0.141 Sum_probs=30.3
Q ss_pred HHHHHHHHHHhCCC-cEEEeeecCCCCCCCCcceeeCCCCceecHHhHHHHHHHHHHHHHcCCCccccCCCCcchHHHHH
Q psy15126 18 LFQVIPMIRKQFPS-LTIACDVCLCGYTSHGHCAIFNEDGSIHYEKTLKRLADISKAFSDAGAHIVAPSDMMDNRIHAIK 96 (300)
Q Consensus 18 ~~~~i~~ik~~~p~-l~i~~Dvclc~yt~hGHcgi~~~~g~i~nd~Tl~~l~~~A~~~A~aGad~vAPSdmMDgrv~air 96 (300)
+.++++..|+.+|. +.|+.-|+ |+ +++.+..++|+|+|-...|-...+..++
T Consensus 185 i~~ai~~~r~~~~~~~~i~vev~-----------------------tl----ee~~~A~~aGaD~I~ld~~~~~~l~~~v 237 (294)
T 3c2e_A 185 ITNAVKNARAVCGFAVKIEVECL-----------------------SE----DEATEAIEAGADVIMLDNFKGDGLKMCA 237 (294)
T ss_dssp HHHHHHHHHHHHCTTSCEEEECS-----------------------SS----HHHHHHHHHTCSEEECCC----------
T ss_pred HHHHHHHHHHhcCcCCeEEEecC-----------------------CH----HHHHHHHHcCCCEEEECCCCHHHHHHHH
Confidence 67899999999885 33333111 11 2334445689999999777777777778
Q ss_pred HHHhhC--CCCCCcccc
Q psy15126 97 QSLFTS--RQSSTTGLL 111 (300)
Q Consensus 97 ~aLd~~--g~~~~v~Im 111 (300)
+.++.. || .++.|.
T Consensus 238 ~~l~~~~~g~-~~v~I~ 253 (294)
T 3c2e_A 238 QSLKNKWNGK-KHFLLE 253 (294)
T ss_dssp ------------CCEEE
T ss_pred HHhcccccCC-CCeEEE
Confidence 888776 67 566664
No 327
>1u83_A Phosphosulfolactate synthase; structural genomics, phosphosulfolactate PSI, protein structure initiative, midwest center for struc genomics; 2.20A {Bacillus subtilis} SCOP: c.1.27.1
Probab=36.08 E-value=31 Score=32.24 Aligned_cols=85 Identities=13% Similarity=0.101 Sum_probs=0.0
Q ss_pred HHHHHHHhhhcccccCCCCCccccchhhhcCCceeeccCcch------HHHHHHHHHhhCCCCCEEeEecccccHHHHHH
Q psy15126 184 RLADISKAFSDAVYVPNHNTDRFQARDVSQGADFLMVKPALP------YLDIISEVKSRHPAYPLFVYQVSGEYAMLAFA 257 (300)
Q Consensus 184 ~l~~~a~~~a~~~~~~~~n~~~~~~~Da~~GADivmVkPsmm------~ld~Ir~~~d~~~~vpi~aY~vSgeY~~~r~A 257 (300)
.|.+.++.+ +..++++..=-+-|-|.|=|.=+.. +...||++++.| ..+.=... |++
T Consensus 101 TlfE~~l~q--------g~~~~yl~~~k~lGF~~IEISdGti~l~~~~~~~lI~~a~~~f--~Vl~EvG~-------K~~ 163 (276)
T 1u83_A 101 TLFEKYVSQ--------KKVNEFHRYCTYFGCEYIEISNGTLPMTNKEKAAYIADFSDEF--LVLSEVGS-------KDA 163 (276)
T ss_dssp HHHHHHHHT--------TCHHHHHHHHHHTTCSEEEECCSSSCCCHHHHHHHHHHHTTTS--EEEEECSC-------CC-
T ss_pred HHHHHHHHc--------CcHHHHHHHHHHcCCCEEEECCCcccCCHHHHHHHHHHHHhhc--EEeeeccc-------cCc
Q ss_pred HhCCCCCHHHHHHHHHHHHHHcCCCEEEe
Q psy15126 258 AQAGALDLKRALMETLTCLRRGGADVIIS 286 (300)
Q Consensus 258 a~~~~~n~~eal~E~~~~~~r~GAD~Ii~ 286 (300)
...+..+..+.+.....++ ++||++||+
T Consensus 164 ~~~~~~~~~~~I~~~~~dL-eAGA~~Vii 191 (276)
T 1u83_A 164 ELASRQSSEEWLEYIVEDM-EAGAEKVIT 191 (276)
T ss_dssp -----CCSTHHHHHHHHHH-HHTEEEEEE
T ss_pred cccCCCCHHHHHHHHHHHH-HCCCcEEEE
No 328
>3uhf_A Glutamate racemase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta sandwich fold, isomerase; HET: DGL; 1.83A {Campylobacter jejuni} PDB: 3uho_A* 3uhp_A
Probab=36.07 E-value=89 Score=28.31 Aligned_cols=89 Identities=11% Similarity=0.085 Sum_probs=58.1
Q ss_pred HHHHHHHhCCC--cEEEeeecCCCCCCCCcceeeCCCCceecHHhHHHHHHHHHHHHHcCCCcccc--C-----------
Q psy15126 21 VIPMIRKQFPS--LTIACDVCLCGYTSHGHCAIFNEDGSIHYEKTLKRLADISKAFSDAGAHIVAP--S----------- 85 (300)
Q Consensus 21 ~i~~ik~~~p~--l~i~~Dvclc~yt~hGHcgi~~~~g~i~nd~Tl~~l~~~A~~~A~aGad~vAP--S----------- 85 (300)
..+.|++..|+ ++-..|..-+|| |.=..+.-.+.+.+.+..+.+.|+++|.. +
T Consensus 39 v~~~i~~~lP~e~~iy~~D~a~~PY------------G~ks~e~i~~~~~~~~~~L~~~g~d~IVIACNTa~~~al~~lr 106 (274)
T 3uhf_A 39 VLKSLYEARLFDEIIYYGDTARVPY------------GVKDKDTIIKFCLEALDFFEQFQIDMLIIACNTASAYALDALR 106 (274)
T ss_dssp HHHHHHHTTCCSEEEEEECTTTCCC------------TTSCHHHHHHHHHHHHHHHTTSCCSEEEECCHHHHHHSHHHHH
T ss_pred HHHHHHHHCCCCCEEEEecCCCCCC------------CCCCHHHHHHHHHHHHHHHHHCCCCEEEEeCCChhHHHHHHHH
Confidence 67899999996 777899999999 33345566666777777778889998865 1
Q ss_pred ----CCCcchH-HHHHHHHhh--CCCCCCcccccchhhhhcccc
Q psy15126 86 ----DMMDNRI-HAIKQSLFT--SRQSSTTGLLSYSAKFCSAFY 122 (300)
Q Consensus 86 ----dmMDgrv-~air~aLd~--~g~~~~v~ImsysaK~aS~~Y 122 (300)
...=|-+ .+++.+... .+. .+++||+=.+--.|.+|
T Consensus 107 ~~~~iPvigiiepa~~~a~~~~~t~~-~~IGVLaT~~Ti~s~~Y 149 (274)
T 3uhf_A 107 AKAHFPVYGVIDAGVEATIKALHDKN-KEILVIATKATIKSEEY 149 (274)
T ss_dssp HHCSSCEECSHHHHHHHHHHHHCCTT-SCEEEEECHHHHHHTHH
T ss_pred HhcCCCEEcCCHHHHHHHHHhcccCC-CeEEEEeccccccHHHH
Confidence 1122334 233334433 345 56788866666666555
No 329
>3ks6_A Glycerophosphoryl diester phosphodiesterase; structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.80A {Agrobacterium tumefaciens str} PDB: 3ks5_A*
Probab=35.99 E-value=91 Score=26.93 Aligned_cols=63 Identities=8% Similarity=0.069 Sum_probs=43.7
Q ss_pred hcCCceeeccCcc--hHHHHHHHHHhhCCCCCEEeEecccccHHHHHHHhCCCCCHHHHHHHHHHHHHHcCCCEEEecch
Q psy15126 212 SQGADFLMVKPAL--PYLDIISEVKSRHPAYPLFVYQVSGEYAMLAFAAQAGALDLKRALMETLTCLRRGGADVIISYYT 289 (300)
Q Consensus 212 ~~GADivmVkPsm--m~ld~Ir~~~d~~~~vpi~aY~vSgeY~~~r~Aa~~~~~n~~eal~E~~~~~~r~GAD~Ii~y~A 289 (300)
..|++++ .|.. ..-+.|+++++. +.+|.+|.| |..+. +..+.+.|+|.|||-+-
T Consensus 179 ~~~~~~~--~~~~~~~~~~~v~~~~~~--G~~V~~WTv----------------n~~~~----~~~l~~~GVDgIiTD~P 234 (250)
T 3ks6_A 179 AHSIHEI--GVHIDTADAGLMAQVQAA--GLDFGCWAA----------------HTPSQ----ITKALDLGVKVFTTDRP 234 (250)
T ss_dssp HTTCCEE--EEEGGGCCHHHHHHHHHT--TCEEEEECC----------------CSHHH----HHHHHHHTCSEEEESCH
T ss_pred hcCCCEE--ecchhhCCHHHHHHHHHC--CCEEEEEeC----------------CCHHH----HHHHHHcCCCEEEcCCH
Confidence 5688887 5652 245677777775 799999976 54332 23334569999999988
Q ss_pred HHHHHHHhh
Q psy15126 290 PRVLEWLRE 298 (300)
Q Consensus 290 ~~~ld~l~~ 298 (300)
..+.+++++
T Consensus 235 ~~~~~~~~~ 243 (250)
T 3ks6_A 235 TLAIALRTE 243 (250)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 777777654
No 330
>4h3d_A 3-dehydroquinate dehydratase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel, aldolase class I; HET: PGE SHL; 1.95A {Clostridium difficile} PDB: 3js3_A*
Probab=35.92 E-value=54 Score=29.30 Aligned_cols=30 Identities=27% Similarity=0.332 Sum_probs=24.0
Q ss_pred HHhHHHHHHHHHHHHHcCCCcccc-CCCCcc
Q psy15126 61 EKTLKRLADISKAFSDAGAHIVAP-SDMMDN 90 (300)
Q Consensus 61 d~Tl~~l~~~A~~~A~aGad~vAP-SdmMDg 90 (300)
..|++.+.+++..+.+.|+|+|-. -|.+++
T Consensus 28 ~~t~~e~l~~a~~~~~~~aD~vElR~D~l~~ 58 (258)
T 4h3d_A 28 GKNKKDIIKEAKELKDACLDIIEWRVDFFEN 58 (258)
T ss_dssp CSSHHHHHHHHHHHTTSSCSEEEEEGGGCTT
T ss_pred CCCHHHHHHHHHHHhhcCCCEEEEeeccccc
Confidence 467888899999999999999888 555544
No 331
>1eye_A DHPS 1, dihydropteroate synthase I; alpha-beta barrel, transferase; HET: PMM; 1.70A {Mycobacterium tuberculosis H37RV} SCOP: c.1.21.1
Probab=35.87 E-value=2.5e+02 Score=25.48 Aligned_cols=71 Identities=14% Similarity=0.213 Sum_probs=43.7
Q ss_pred hhcCCceeecc-----Cc---------ch-HHHHHHHHHhhCCCCCEEeEecccccHHHHHHHhCC--CC------CHHH
Q psy15126 211 VSQGADFLMVK-----PA---------LP-YLDIISEVKSRHPAYPLFVYQVSGEYAMLAFAAQAG--AL------DLKR 267 (300)
Q Consensus 211 a~~GADivmVk-----Ps---------mm-~ld~Ir~~~d~~~~vpi~aY~vSgeY~~~r~Aa~~~--~~------n~~e 267 (300)
+++|||||=|. |. +. .+.+|+.+++. ++||..= |-.-.-.++|.+.| .+ +..+
T Consensus 39 v~~GAdiIDIGgestrpga~~v~~~eE~~Rv~pvi~~l~~~--~~piSID--T~~~~va~aAl~aGa~iINdvsg~~~d~ 114 (280)
T 1eye_A 39 AAAGAGIVDVGGESSRPGATRVDPAVETSRVIPVVKELAAQ--GITVSID--TMRADVARAALQNGAQMVNDVSGGRADP 114 (280)
T ss_dssp HHTTCSEEEEECC--------------HHHHHHHHHHHHHT--TCCEEEE--CSCHHHHHHHHHTTCCEEEETTTTSSCT
T ss_pred HHCCCCEEEECCccCCCCCCCCCHHHHHHHHHHHHHHhhcC--CCEEEEe--CCCHHHHHHHHHcCCCEEEECCCCCCCH
Confidence 89999999665 33 11 36666666654 7888654 55667778887764 11 1233
Q ss_pred HHHHHHHHHHHcCCCEEEecc
Q psy15126 268 ALMETLTCLRRGGADVIISYY 288 (300)
Q Consensus 268 al~E~~~~~~r~GAD~Ii~y~ 288 (300)
.+.+... +.|+-+|+...
T Consensus 115 ~m~~~~a---~~~~~vVlmh~ 132 (280)
T 1eye_A 115 AMGPLLA---EADVPWVLMHW 132 (280)
T ss_dssp THHHHHH---HHTCCEEEECC
T ss_pred HHHHHHH---HhCCeEEEEcC
Confidence 4555443 45888887653
No 332
>2qyg_A Ribulose bisphosphate carboxylase-like protein 2; beta-alpha-barrel, unknown function; 3.30A {Rhodopseudomonas palustris}
Probab=35.82 E-value=83 Score=31.07 Aligned_cols=69 Identities=25% Similarity=0.288 Sum_probs=40.2
Q ss_pred hhcCCceeeccCcchHHHHHHHHHhhCCCCCEEeEecccccHHHHHHHhCCCCCHHHHHHHHHHHHHHcCCCEEEec
Q psy15126 211 VSQGADFLMVKPALPYLDIISEVKSRHPAYPLFVYQVSGEYAMLAFAAQAGALDLKRALMETLTCLRRGGADVIISY 287 (300)
Q Consensus 211 a~~GADivmVkPsmm~ld~Ir~~~d~~~~vpi~aY~vSgeY~~~r~Aa~~~~~n~~eal~E~~~~~~r~GAD~Ii~y 287 (300)
.+.|+.++||-+-.-=..+++.+.+. +++||..+-+ ..|.+-.-.+.|. +. .++ -.+..+ +|||.|.+-
T Consensus 274 ~e~G~~~vmvd~~~~G~~a~~~la~~-~~l~lh~HrA--~hga~~r~~~~Gi-~~-~vl-~Kl~RL--aGaD~ih~g 342 (452)
T 2qyg_A 274 VANGAGALLINAMPVGLSAVRMLRKH-ATVPLIAHFP--FIAAFSRLANYGI-HS-RVM-TRLQRL--AGFDVVIMP 342 (452)
T ss_dssp HHTTCCEEEEEHHHHCHHHHHHHHTT-CCSCEEEECT--THHHHHSCTTSEE-CH-HHH-HHHHHH--HTCSEEEEC
T ss_pred HHhCCCeEEEeccccChHHHHHHHhc-CCCeEEEccC--cceeccCCCCCCC-cH-HHH-HHHHHH--cCCCeeecC
Confidence 57899999997653324455555544 6999999865 3333321112232 22 233 334444 799999863
No 333
>1qpo_A Quinolinate acid phosphoribosyl transferase; type II prtase, de novo NAD biosynthesis, PRPP, phosphoribos transferase; 2.40A {Mycobacterium tuberculosis H37RV} SCOP: c.1.17.1 d.41.2.1 PDB: 1qpn_A 1qpq_A* 1qpr_A*
Probab=35.67 E-value=80 Score=28.91 Aligned_cols=64 Identities=17% Similarity=0.301 Sum_probs=0.0
Q ss_pred hHHHHHHHHHhhhcccccCCCCCccccchhhhcCCceeeccCcch--HHHHHHHHHhhCCCCCEEeEecccccHHHHHHH
Q psy15126 181 TLKRLADISKAFSDAVYVPNHNTDRFQARDVSQGADFLMVKPALP--YLDIISEVKSRHPAYPLFVYQVSGEYAMLAFAA 258 (300)
Q Consensus 181 tl~~l~~~a~~~a~~~~~~~~n~~~~~~~Da~~GADivmVkPsmm--~ld~Ir~~~d~~~~vpi~aY~vSgeY~~~r~Aa 258 (300)
|++.+.+. +++|||+||+-.-.+ .-.+++.++..+++++|.+=
T Consensus 203 t~eea~ea----------------------l~aGaD~I~LDn~~~~~~~~~v~~l~~~~~~v~ieaS------------- 247 (284)
T 1qpo_A 203 SLEQLDAV----------------------LPEKPELILLDNFAVWQTQTAVQRRDSRAPTVMLESS------------- 247 (284)
T ss_dssp SHHHHHHH----------------------GGGCCSEEEEETCCHHHHHHHHHHHHHHCTTCEEEEE-------------
T ss_pred CHHHHHHH----------------------HHcCCCEEEECCCCHHHHHHHHHHhhccCCCeEEEEE-------------
Q ss_pred hCCCCCHHHHHHHHHHHHHHcCCCEEEe
Q psy15126 259 QAGALDLKRALMETLTCLRRGGADVIIS 286 (300)
Q Consensus 259 ~~~~~n~~eal~E~~~~~~r~GAD~Ii~ 286 (300)
|-+| .|.+..+.+.|+|+|.+
T Consensus 248 --GGIt-----~~~i~~~a~tGVD~isv 268 (284)
T 1qpo_A 248 --GGLS-----LQTAATYAETGVDYLAV 268 (284)
T ss_dssp --SSCC-----TTTHHHHHHTTCSEEEC
T ss_pred --CCCC-----HHHHHHHHhcCCCEEEE
No 334
>1tqj_A Ribulose-phosphate 3-epimerase; beta-alpha barrel epimerase, isomerase; 1.60A {Synechocystis SP} SCOP: c.1.2.2
Probab=34.80 E-value=56 Score=28.27 Aligned_cols=88 Identities=18% Similarity=0.109 Sum_probs=45.7
Q ss_pred hHHHHHHHHHhhhcccccCCC-CCccccchhhhcCCcee---eccCc------ch-HHHHHHHHHhhC----CCCCEEeE
Q psy15126 181 TLKRLADISKAFSDAVYVPNH-NTDRFQARDVSQGADFL---MVKPA------LP-YLDIISEVKSRH----PAYPLFVY 245 (300)
Q Consensus 181 tl~~l~~~a~~~a~~~~~~~~-n~~~~~~~Da~~GADiv---mVkPs------mm-~ld~Ir~~~d~~----~~vpi~aY 245 (300)
+..++.+....+-..+-+-.+ +|..-.......|+|+| -|-|. .+ -++.|+++++.. .++||.+=
T Consensus 100 ~~~~~~~~i~~~g~~~gv~~~p~t~~e~~~~~~~~~D~v~~msv~pg~ggq~~~~~~~~~i~~lr~~~~~~~~~~~I~v~ 179 (230)
T 1tqj_A 100 HLHRTLCQIRELGKKAGAVLNPSTPLDFLEYVLPVCDLILIMSVNPGFGGQSFIPEVLPKIRALRQMCDERGLDPWIEVD 179 (230)
T ss_dssp THHHHHHHHHHTTCEEEEEECTTCCGGGGTTTGGGCSEEEEESSCC----CCCCGGGHHHHHHHHHHHHHHTCCCEEEEE
T ss_pred hHHHHHHHHHHcCCcEEEEEeCCCcHHHHHHHHhcCCEEEEEEeccccCCccCcHHHHHHHHHHHHHHHhcCCCCcEEEE
Confidence 455555555555444444443 34322233456799998 45554 11 355566555442 26787654
Q ss_pred ecccccHHHHHHHhCCCCCHHHHHHHHHHHHHHcCCCEEEecc
Q psy15126 246 QVSGEYAMLAFAAQAGALDLKRALMETLTCLRRGGADVIISYY 288 (300)
Q Consensus 246 ~vSgeY~~~r~Aa~~~~~n~~eal~E~~~~~~r~GAD~Ii~y~ 288 (300)
|-+|. |....+.++|||.+++--
T Consensus 180 ---------------GGI~~-----~~~~~~~~aGad~vvvGS 202 (230)
T 1tqj_A 180 ---------------GGLKP-----NNTWQVLEAGANAIVAGS 202 (230)
T ss_dssp ---------------SSCCT-----TTTHHHHHHTCCEEEESH
T ss_pred ---------------CCcCH-----HHHHHHHHcCCCEEEECH
Confidence 22343 222344457888887753
No 335
>3h5i_A Response regulator/sensory box protein/ggdef domain protein; structural genomics, transcription, PSI-2; 1.90A {Carboxydothermus hydrogenoformans z-2901}
Probab=34.64 E-value=1e+02 Score=22.58 Aligned_cols=34 Identities=9% Similarity=0.163 Sum_probs=25.5
Q ss_pred cCCceeeccCcc----hHHHHHHHHHhhCCCCCEEeEec
Q psy15126 213 QGADFLMVKPAL----PYLDIISEVKSRHPAYPLFVYQV 247 (300)
Q Consensus 213 ~GADivmVkPsm----m~ld~Ir~~~d~~~~vpi~aY~v 247 (300)
.-.|+|++--.| .-++.++++++. +++||+..+.
T Consensus 49 ~~~dlvi~D~~l~~~~~g~~~~~~l~~~-~~~~ii~ls~ 86 (140)
T 3h5i_A 49 WYPDLILMDIELGEGMDGVQTALAIQQI-SELPVVFLTA 86 (140)
T ss_dssp CCCSEEEEESSCSSSCCHHHHHHHHHHH-CCCCEEEEES
T ss_pred CCCCEEEEeccCCCCCCHHHHHHHHHhC-CCCCEEEEEC
Confidence 356898887543 367888888775 7899999865
No 336
>2i1o_A Nicotinate phosphoribosyltransferase; ZIN ION, zinc finger M structural genomics, PSI, protein structure initiative; 2.40A {Thermoplasma acidophilum} PDB: 1ytd_A* 1yte_A* 1ytk_A
Probab=34.58 E-value=79 Score=30.24 Aligned_cols=64 Identities=8% Similarity=0.053 Sum_probs=38.3
Q ss_pred HHHHHHHHHhCCC---cEEEeeecCCCCCCCCcceeeCCCCceecHHhHHHHHHHHHHHHHc--CCCcccc-C-----CC
Q psy15126 19 FQVIPMIRKQFPS---LTIACDVCLCGYTSHGHCAIFNEDGSIHYEKTLKRLADISKAFSDA--GAHIVAP-S-----DM 87 (300)
Q Consensus 19 ~~~i~~ik~~~p~---l~i~~Dvclc~yt~hGHcgi~~~~g~i~nd~Tl~~l~~~A~~~A~a--Gad~vAP-S-----dm 87 (300)
.+|++..++.||+ +.+-+| .|.. -++.|+..+++ |++.|-+ | ..
T Consensus 197 ~~A~~~~~~~~p~~~~~~vlvD----T~d~---------------------~~~~al~~a~~l~~~d~IrlDs~~~~~gd 251 (398)
T 2i1o_A 197 EEAWKLTLENTKNGQKSVLLID----TYMD---------------------EKFAAIKIAEMFDKVDYIRLDTPSSRRGN 251 (398)
T ss_dssp HHHHHHHHHTCCTTSCCEEECC----SSSC---------------------HHHHHHHHHTTCSCCCEEEECCCGGGCSC
T ss_pred HHHHHHHHHhCCCCCCEEEEEc----CchH---------------------HHHHHHHHHHhhcCCcEEEeCCCCCCccc
Confidence 7899999999996 333333 3311 12344555555 7777766 3 33
Q ss_pred CcchHHHHHHHHhhCCCCCCc
Q psy15126 88 MDNRIHAIKQSLFTSRQSSTT 108 (300)
Q Consensus 88 MDgrv~air~aLd~~g~~~~v 108 (300)
+---+..+|+.|+..|+ .++
T Consensus 252 ~~~~v~~v~~~ld~~G~-~~~ 271 (398)
T 2i1o_A 252 FEALIREVRWELALRGR-SDI 271 (398)
T ss_dssp HHHHHHHHHHHHHHTTC-TTS
T ss_pred HHHHHHHHHHHHHhCCC-Cce
Confidence 44556666777777776 444
No 337
>3gr7_A NADPH dehydrogenase; flavin, FMN, beta-alpha-barrel, oxidoreductase, flavoprotein; HET: FMN; 2.30A {Geobacillus kaustophilus} PDB: 3gr8_A*
Probab=34.50 E-value=88 Score=28.79 Aligned_cols=68 Identities=18% Similarity=0.150 Sum_probs=0.0
Q ss_pred hHHHHHHHHHhhhcccccCCCCCccccchhhhcCCceeecc-----------CcchHHHHHHHHHhhCCCCCEEeEeccc
Q psy15126 181 TLKRLADISKAFSDAVYVPNHNTDRFQARDVSQGADFLMVK-----------PALPYLDIISEVKSRHPAYPLFVYQVSG 249 (300)
Q Consensus 181 tl~~l~~~a~~~a~~~~~~~~n~~~~~~~Da~~GADivmVk-----------Psmm~ld~Ir~~~d~~~~vpi~aY~vSg 249 (300)
+++...+++..+ .++|+|+|-|. +....++.++++++.+ ++||++=
T Consensus 227 ~~~~~~~la~~L------------------~~~Gvd~i~vs~g~~~~~~~~~~~~~~~~~~~~ik~~~-~iPVi~~---- 283 (340)
T 3gr7_A 227 TAKDYVPYAKRM------------------KEQGVDLVDVSSGAIVPARMNVYPGYQVPFAELIRREA-DIPTGAV---- 283 (340)
T ss_dssp CGGGHHHHHHHH------------------HHTTCCEEEEECCCSSCCCCCCCTTTTHHHHHHHHHHT-TCCEEEE----
T ss_pred CHHHHHHHHHHH------------------HHcCCCEEEEecCCccCCCCCCCccccHHHHHHHHHHc-CCcEEee----
Q ss_pred ccHHHHHHHhCCCCCHHHHHHHHHHHHHHcC-CCEEEe
Q psy15126 250 EYAMLAFAAQAGALDLKRALMETLTCLRRGG-ADVIIS 286 (300)
Q Consensus 250 eY~~~r~Aa~~~~~n~~eal~E~~~~~~r~G-AD~Ii~ 286 (300)
|-+.. .|....+.++| ||+|++
T Consensus 284 -----------GgI~s----~e~a~~~L~~G~aD~V~i 306 (340)
T 3gr7_A 284 -----------GLITS----GWQAEEILQNGRADLVFL 306 (340)
T ss_dssp -----------SSCCC----HHHHHHHHHTTSCSEEEE
T ss_pred -----------CCCCC----HHHHHHHHHCCCeeEEEe
No 338
>2jfz_A Glutamate racemase; cell WALL, isomerase, cell shape, peptidoglycan synthesis, peptidoglycan biosynthesis; HET: 003 DGL; 1.86A {Helicobacter pylori} PDB: 2jfx_A* 2jfy_A* 2w4i_A*
Probab=34.48 E-value=55 Score=28.54 Aligned_cols=52 Identities=10% Similarity=-0.012 Sum_probs=38.3
Q ss_pred HHHHHHHhCCC--cEEEeeecCCCCCCCCcceeeCCCCceecHHhHHHHHHHHHHHHHcCCCcccc
Q psy15126 21 VIPMIRKQFPS--LTIACDVCLCGYTSHGHCAIFNEDGSIHYEKTLKRLADISKAFSDAGAHIVAP 84 (300)
Q Consensus 21 ~i~~ik~~~p~--l~i~~Dvclc~yt~hGHcgi~~~~g~i~nd~Tl~~l~~~A~~~A~aGad~vAP 84 (300)
..+.|++.+|+ ++-++|....||..- ..+.-.+.+.+.+..+.+.|++.|..
T Consensus 15 v~~~l~~~lP~~~~iy~~D~~~~Pyg~~------------s~~~i~~~~~~~~~~L~~~g~d~ivi 68 (255)
T 2jfz_A 15 VLKSLLKARLFDEIIYYGDSARVPYGTK------------DPTTIKQFGLEALDFFKPHEIELLIV 68 (255)
T ss_dssp HHHHHHHTTCCSEEEEEECTTTCCCTTS------------CHHHHHHHHHHHHHHHGGGCCSCEEE
T ss_pred HHHHHHHHCCCCCEEEEeCCCCCCCCCC------------CHHHHHHHHHHHHHHHHHCCCCEEEE
Confidence 57889999996 566678888888431 33445667777777778889998876
No 339
>3kts_A Glycerol uptake operon antiterminator regulatory; structural genomics, PSI-2, protein structur initiative; HET: UNL; 2.75A {Listeria monocytogenes str}
Probab=33.85 E-value=47 Score=29.13 Aligned_cols=54 Identities=11% Similarity=0.264 Sum_probs=37.8
Q ss_pred CCceeeccCcchHHHHHHHHHhhCCCCCEEeEecccccHHHHHHHhCCCCCHHHHHHHHHHHHHHcCCCEEEecc
Q psy15126 214 GADFLMVKPALPYLDIISEVKSRHPAYPLFVYQVSGEYAMLAFAAQAGALDLKRALMETLTCLRRGGADVIISYY 288 (300)
Q Consensus 214 GADivmVkPsmm~ld~Ir~~~d~~~~vpi~aY~vSgeY~~~r~Aa~~~~~n~~eal~E~~~~~~r~GAD~Ii~y~ 288 (300)
..|++=+=|+.| -.+|+++++.. ++||.+= |.+..+|-+++ .+ ++|||.|.|--
T Consensus 127 ~PD~iEiLPGi~-p~iI~~i~~~~-~~PiIaG---------------GlI~~~edv~~---al-~aGA~aVsTs~ 180 (192)
T 3kts_A 127 QPDCIELLPGII-PEQVQKMTQKL-HIPVIAG---------------GLIETSEQVNQ---VI-ASGAIAVTTSN 180 (192)
T ss_dssp CCSEEEEECTTC-HHHHHHHHHHH-CCCEEEE---------------SSCCSHHHHHH---HH-TTTEEEEEECC
T ss_pred CCCEEEECCchh-HHHHHHHHHhc-CCCEEEE---------------CCcCCHHHHHH---HH-HcCCeEEEeCC
Confidence 346665668833 27889988885 8999986 45666655554 44 69999998753
No 340
>3vk5_A MOEO5; TIM barrel, transferase; HET: FPQ; 1.39A {Streptomyces ghanaensis} PDB: 3vka_A* 3vkb_A* 3vkc_A* 3vkd_A*
Probab=33.75 E-value=46 Score=31.09 Aligned_cols=32 Identities=13% Similarity=0.245 Sum_probs=24.9
Q ss_pred hhcCCceeeccCcc--h-----HHHHHHHHHhhCCCCCEEe
Q psy15126 211 VSQGADFLMVKPAL--P-----YLDIISEVKSRHPAYPLFV 244 (300)
Q Consensus 211 a~~GADivmVkPsm--m-----~ld~Ir~~~d~~~~vpi~a 244 (300)
.+.|+|.|||. |. . ..+.++.+|+.+ ++|++-
T Consensus 63 ~~sGtDai~VG-S~~vt~~~~~~~~~v~~ik~~~-~lPvil 101 (286)
T 3vk5_A 63 TRLGFAAVLLA-STDYESFESHMEPYVAAVKAAT-PLPVVL 101 (286)
T ss_dssp HHTTCSCEEEE-CSCCSSHHHHHHHHHHHHHHHC-SSCEEE
T ss_pred HhcCCCEEEEc-cCCCCcchHHHHHHHHHHHHhC-CCCEEE
Confidence 57899999999 94 2 466677777766 799987
No 341
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*
Probab=33.69 E-value=72 Score=29.38 Aligned_cols=50 Identities=20% Similarity=0.263 Sum_probs=34.0
Q ss_pred hcCCceeeccCcc---hHHHHHHHHHhhCCCCCEEeEecccccHHHHHHHhCC
Q psy15126 212 SQGADFLMVKPAL---PYLDIISEVKSRHPAYPLFVYQVSGEYAMLAFAAQAG 261 (300)
Q Consensus 212 ~~GADivmVkPsm---m~ld~Ir~~~d~~~~vpi~aY~vSgeY~~~r~Aa~~~ 261 (300)
+...|+|++--.| .-++.++++++.++++||+..+..+.-.....|.+.|
T Consensus 42 ~~~~DlvllD~~mp~~dG~ell~~lr~~~~~~pvIvlT~~~~~~~~~~a~~~G 94 (387)
T 1ny5_A 42 EKHFNVVLLDLLLPDVNGLEILKWIKERSPETEVIVITGHGTIKTAVEAMKMG 94 (387)
T ss_dssp HSCCSEEEEESBCSSSBHHHHHHHHHHHCTTSEEEEEEETTCHHHHHHHHTTT
T ss_pred hCCCCEEEEeCCCCCCCHHHHHHHHHhhCCCCcEEEEeCCCCHHHHHHHHhcC
Confidence 3457888776444 4688899999888899999986644444444444443
No 342
>1vcf_A Isopentenyl-diphosphate delta-isomerase; TIM barrel, structural genomics, riken structural genomics/P initiative, RSGI; HET: FMN; 2.60A {Thermus thermophilus} SCOP: c.1.4.1 PDB: 1vcg_A* 3dh7_A*
Probab=33.34 E-value=1.2e+02 Score=27.35 Aligned_cols=44 Identities=25% Similarity=0.262 Sum_probs=26.6
Q ss_pred HHHHHHHHHhhCCCCCEEeEecccccHHHHHHHhCCCCCHHHHHHHHHHHHHHcCCCEEEecc
Q psy15126 226 YLDIISEVKSRHPAYPLFVYQVSGEYAMLAFAAQAGALDLKRALMETLTCLRRGGADVIISYY 288 (300)
Q Consensus 226 ~ld~Ir~~~d~~~~vpi~aY~vSgeY~~~r~Aa~~~~~n~~eal~E~~~~~~r~GAD~Ii~y~ 288 (300)
.+..|+++++..+++||++= =|..+..++ ++.+ ..|||.|++.-
T Consensus 243 ~~~~l~~v~~~~~~ipvia~--------------GGI~~~~d~----~kal-~~GAd~V~igr 286 (332)
T 1vcf_A 243 TARAILEVREVLPHLPLVAS--------------GGVYTGTDG----AKAL-ALGADLLAVAR 286 (332)
T ss_dssp HHHHHHHHHHHCSSSCEEEE--------------SSCCSHHHH----HHHH-HHTCSEEEECG
T ss_pred HHHHHHHHHHhcCCCeEEEE--------------CCCCCHHHH----HHHH-HhCCChHhhhH
Confidence 56666776666445777653 144555443 3344 46999998864
No 343
>1qop_A Tryptophan synthase alpha chain; lyase, carbon-oxygen lyase, tryptophan biosynthesis, pyridoxal phosphate; HET: IPL PLP; 1.4A {Salmonella typhimurium} SCOP: c.1.2.4 PDB: 1k8x_A* 1wbj_A* 2clk_A* 2j9z_A* 3cep_A* 1k8y_A* 1a5s_A* 1a50_A* 1c29_A* 1c8v_A* 1c9d_A* 1bks_A* 1cx9_A* 1fuy_A* 1cw2_A* 1k7e_A* 1k7f_A* 1k7x_A* 1k3u_A* 1k8z_A* ...
Probab=33.26 E-value=53 Score=28.95 Aligned_cols=36 Identities=8% Similarity=0.156 Sum_probs=25.9
Q ss_pred HHHHHHHHHcCCC-ccccCCCCcchHHHHHHHHhhCCC
Q psy15126 68 ADISKAFSDAGAH-IVAPSDMMDNRIHAIKQSLFTSRQ 104 (300)
Q Consensus 68 ~~~A~~~A~aGad-~vAPSdmMDgrv~air~aLd~~g~ 104 (300)
.+-+..++++|+| ++.| |.....+....+.+.+.|+
T Consensus 112 ~~~~~~~~~aGadgii~~-d~~~e~~~~~~~~~~~~g~ 148 (268)
T 1qop_A 112 DAFYARCEQVGVDSVLVA-DVPVEESAPFRQAALRHNI 148 (268)
T ss_dssp HHHHHHHHHHTCCEEEET-TCCGGGCHHHHHHHHHTTC
T ss_pred HHHHHHHHHcCCCEEEEc-CCCHHHHHHHHHHHHHcCC
Confidence 3455567788999 5555 4444667888888888887
No 344
>1yxy_A Putative N-acetylmannosamine-6-phosphate 2-epimer; structural genomics, epimerase, PSI, structure initiative; 1.60A {Streptococcus pyogenes} SCOP: c.1.2.5
Probab=33.19 E-value=70 Score=26.90 Aligned_cols=39 Identities=21% Similarity=0.413 Sum_probs=29.7
Q ss_pred hHHHHHHHHHHhCCCcEEEeeecCCCCCCCCcceeeCCCCceecHHhHHHHHHHHHHHHHcCCCcc
Q psy15126 17 PLFQVIPMIRKQFPSLTIACDVCLCGYTSHGHCAIFNEDGSIHYEKTLKRLADISKAFSDAGAHIV 82 (300)
Q Consensus 17 ~~~~~i~~ik~~~p~l~i~~Dvclc~yt~hGHcgi~~~~g~i~nd~Tl~~l~~~A~~~A~aGad~v 82 (300)
.+.+.++.+|+.+|++.|+.++. |+ +.+..+.++|+|.|
T Consensus 119 ~~~~~i~~i~~~~~~~~v~~~~~-----------------------t~----~ea~~a~~~Gad~i 157 (234)
T 1yxy_A 119 DIASFIRQVKEKYPNQLLMADIS-----------------------TF----DEGLVAHQAGIDFV 157 (234)
T ss_dssp CHHHHHHHHHHHCTTCEEEEECS-----------------------SH----HHHHHHHHTTCSEE
T ss_pred cHHHHHHHHHHhCCCCeEEEeCC-----------------------CH----HHHHHHHHcCCCEE
Confidence 67889999999999888877542 12 22677788999998
No 345
>2c6q_A GMP reductase 2; TIM barrel, metal-binding, NADP, oxidoreductase, potassium; HET: IMP NDP; 1.70A {Homo sapiens} PDB: 2bzn_A* 2a7r_A* 2ble_A* 2bwg_A*
Probab=33.04 E-value=1.2e+02 Score=28.10 Aligned_cols=56 Identities=21% Similarity=0.305 Sum_probs=34.0
Q ss_pred hhcCCceeecc--Cc------------chHHHHHHHH---HhhCCCCCEEeEecccccHHHHHHHhCCCCCHHHHHHHHH
Q psy15126 211 VSQGADFLMVK--PA------------LPYLDIISEV---KSRHPAYPLFVYQVSGEYAMLAFAAQAGALDLKRALMETL 273 (300)
Q Consensus 211 a~~GADivmVk--Ps------------mm~ld~Ir~~---~d~~~~vpi~aY~vSgeY~~~r~Aa~~~~~n~~eal~E~~ 273 (300)
+++|||+|.|. |+ .+.+..+.++ .+.. ++||++= =|..+. .++.
T Consensus 179 ~~aGaD~I~v~~g~G~~~~~r~~~g~~~p~~~~l~~v~~~~~~~-~ipvIa~--------------GGI~~g----~di~ 239 (351)
T 2c6q_A 179 ILSGADIIKVGIGPGSVCTTRKKTGVGYPQLSAVMECADAAHGL-KGHIISD--------------GGCSCP----GDVA 239 (351)
T ss_dssp HHTTCSEEEECSSCSTTBCHHHHHCBCCCHHHHHHHHHHHHHHT-TCEEEEE--------------SCCCSH----HHHH
T ss_pred HHhCCCEEEECCCCCcCcCccccCCCCccHHHHHHHHHHHHhhc-CCcEEEe--------------CCCCCH----HHHH
Confidence 67999999774 31 1234344443 3433 6887763 244555 4455
Q ss_pred HHHHHcCCCEEEe
Q psy15126 274 TCLRRGGADVIIS 286 (300)
Q Consensus 274 ~~~~r~GAD~Ii~ 286 (300)
+.+ ..|||.+++
T Consensus 240 kAl-alGA~~V~v 251 (351)
T 2c6q_A 240 KAF-GAGADFVML 251 (351)
T ss_dssp HHH-HTTCSEEEE
T ss_pred HHH-HcCCCceec
Confidence 677 689999875
No 346
>3no3_A Glycerophosphodiester phosphodiesterase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 1.89A {Parabacteroides distasonis} SCOP: c.1.18.0
Probab=32.77 E-value=84 Score=27.03 Aligned_cols=63 Identities=19% Similarity=0.159 Sum_probs=41.9
Q ss_pred hcCCceeeccCcchHH----HHHHHHHhhCCCCCEEeEecccccHHHHHHHhCCCCCHHHHHHHHHHHHHHcCCCEEEec
Q psy15126 212 SQGADFLMVKPALPYL----DIISEVKSRHPAYPLFVYQVSGEYAMLAFAAQAGALDLKRALMETLTCLRRGGADVIISY 287 (300)
Q Consensus 212 ~~GADivmVkPsmm~l----d~Ir~~~d~~~~vpi~aY~vSgeY~~~r~Aa~~~~~n~~eal~E~~~~~~r~GAD~Ii~y 287 (300)
+.|++.+ .|....+ +.|+++++. +++|.+|.| |..+. +..+.+.|+|.|||-
T Consensus 169 ~~~~~~~--~~~~~~~~~~~~~v~~~~~~--G~~v~~WTV----------------n~~~~----~~~l~~~GVdgIiTD 224 (238)
T 3no3_A 169 ELGFTGL--DYHYKVLQSHPDWVKDCKVL--GMTSNVWTV----------------DDPKL----MEEMIDMGVDFITTD 224 (238)
T ss_dssp HTTCCEE--EEEHHHHHHSTTHHHHHHHT--TCEEEEECC----------------CSHHH----HHHHHHHTCSEEEES
T ss_pred HCCCceE--eccHHhhhCCHHHHHHHHHC--CCEEEEECC----------------CCHHH----HHHHHHcCCCEEECC
Confidence 3567766 4442222 467777764 689999976 54332 233335699999999
Q ss_pred chHHHHHHHhh
Q psy15126 288 YTPRVLEWLRE 298 (300)
Q Consensus 288 ~A~~~ld~l~~ 298 (300)
+-..+.++|++
T Consensus 225 ~P~~~~~~l~~ 235 (238)
T 3no3_A 225 LPEETQKILHS 235 (238)
T ss_dssp CHHHHHHHHHH
T ss_pred CHHHHHHHHHh
Confidence 98888888865
No 347
>2hmc_A AGR_L_411P, dihydrodipicolinate synthase; alpha-beta barrel (TIM barrel), structural genomics, PSI-2, structure initiative; HET: MSE; 1.90A {Agrobacterium tumefaciens str}
Probab=32.47 E-value=78 Score=29.49 Aligned_cols=38 Identities=26% Similarity=0.328 Sum_probs=26.4
Q ss_pred hhcCCceeeccCc---c-h----HHHHHHHHHhhCCCCCEEeEecc
Q psy15126 211 VSQGADFLMVKPA---L-P----YLDIISEVKSRHPAYPLFVYQVS 248 (300)
Q Consensus 211 a~~GADivmVkPs---m-m----~ld~Ir~~~d~~~~vpi~aY~vS 248 (300)
.+.|||.+||-|- - + -++..+++.+..+++||+-|++-
T Consensus 115 ~~~Gadavlv~~P~y~~~~s~~~l~~~f~~IA~aa~~lPiilYn~P 160 (344)
T 2hmc_A 115 QKVGAKGLMVIPRVLSRGSVIAAQKAHFKAILSAAPEIPAVIYNSP 160 (344)
T ss_dssp HHHTCSEEEECCCCSSSTTCHHHHHHHHHHHHHHSTTSCEEEEEBG
T ss_pred HhcCCCEEEECCCccCCCCCHHHHHHHHHHHHhhCCCCcEEEEecC
Confidence 4679999888543 1 2 35666677772257999999973
No 348
>3o07_A Pyridoxine biosynthesis protein SNZ1; (beta/alpha)8-barrel, pyridoxal 5-phosphate synthase, PLP G3 SNO1, biosynthetic protein; HET: 1GP; 1.80A {Saccharomyces cerevisiae} PDB: 3o06_A 3o05_A* 3fem_A
Probab=32.41 E-value=1.4e+02 Score=28.16 Aligned_cols=54 Identities=20% Similarity=0.183 Sum_probs=37.8
Q ss_pred hhcCCceeecc---Ccch----------HHHHHHHHHhhCCCCCEEeEecccccHHHHHHHhCCCCCHHHHHHHHHHHHH
Q psy15126 211 VSQGADFLMVK---PALP----------YLDIISEVKSRHPAYPLFVYQVSGEYAMLAFAAQAGALDLKRALMETLTCLR 277 (300)
Q Consensus 211 a~~GADivmVk---Psmm----------~ld~Ir~~~d~~~~vpi~aY~vSgeY~~~r~Aa~~~~~n~~eal~E~~~~~~ 277 (300)
-++||..||+- |+.. -...|+++++.. ++|||+=-=-|. +.|+..-.
T Consensus 28 e~aGa~av~~l~~~p~d~r~~gGv~Rm~dp~~I~~I~~aV-sIPVm~k~righ------------------~~EAqile- 87 (291)
T 3o07_A 28 EKSGACAVMALESIPADMRKSGKVCRMSDPKMIKDIMNSV-SIPVMAKVRIGH------------------FVEAQIIE- 87 (291)
T ss_dssp HHHTCSEEEECSSCHHHHHTTTCCCCCCCHHHHHHHHTTC-SSCEEEEEETTC------------------HHHHHHHH-
T ss_pred HHhCchhhhhccCCCchhhhcCCccccCCHHHHHHHHHhC-CCCeEEEEecCc------------------HHHHHHHH-
Confidence 56899999987 4422 388999999985 899999743222 33443333
Q ss_pred HcCCCEE
Q psy15126 278 RGGADVI 284 (300)
Q Consensus 278 r~GAD~I 284 (300)
..|||+|
T Consensus 88 a~GaD~I 94 (291)
T 3o07_A 88 ALEVDYI 94 (291)
T ss_dssp HTTCSEE
T ss_pred HcCCCEE
Confidence 4899987
No 349
>1n7k_A Deoxyribose-phosphate aldolase; A.pernix, tetramer, alpha-beta TIM barrel, riken S genomics/proteomics initiative, RSGI, structural genomics,; 2.00A {Aeropyrum pernix} SCOP: c.1.10.1
Probab=32.24 E-value=1.4e+02 Score=26.53 Aligned_cols=59 Identities=20% Similarity=0.209 Sum_probs=34.8
Q ss_pred hcCCceeeccCcchHHHHHHHHHhhCCCCCEEeEecccccHHHHHHHhCCCCCHHHHHHHHHHHHHHcCCCEE
Q psy15126 212 SQGADFLMVKPALPYLDIISEVKSRHPAYPLFVYQVSGEYAMLAFAAQAGALDLKRALMETLTCLRRGGADVI 284 (300)
Q Consensus 212 ~~GADivmVkPsmm~ld~Ir~~~d~~~~vpi~aY~vSgeY~~~r~Aa~~~~~n~~eal~E~~~~~~r~GAD~I 284 (300)
+-|++.|+|-|++ + ..++.+...+++.+.+- .|| -.|..+.+.-+.|+...+ +.|||-|
T Consensus 47 ~~~~~aVcv~p~~--v-~a~~~l~~~~~v~v~tv--igF--------P~G~~~~~~k~~e~~~Av-~~GAdEI 105 (234)
T 1n7k_A 47 DYGFRCAVLTPVY--T-VKISGLAEKLGVKLCSV--IGF--------PLGQAPLEVKLVEAQTVL-EAGATEL 105 (234)
T ss_dssp HHTCSEEEECHHH--H-HHHHHHHHHHTCCEEEE--EST--------TTCCSCHHHHHHHHHHHH-HHTCCEE
T ss_pred HhCCCEEEEchHH--h-eeehHhCCCCCceEEEE--eCC--------CCCCCcHHHHHHHHHHHH-HcCCCEE
Confidence 3489999999984 4 44555543224666555 344 122234455566776666 5777765
No 350
>1l6w_A Fructose-6-phosphate aldolase 1; alpha-beta barrel, domain swapping, lyase; 1.93A {Escherichia coli} SCOP: c.1.10.1
Probab=32.18 E-value=33 Score=30.46 Aligned_cols=92 Identities=21% Similarity=0.170 Sum_probs=49.4
Q ss_pred CCCCCChHHHHHHHHHHhCCCcEEEeeecCCCCCCCCcceee--CCCCceecHHhHHHHHHHHHHHHHcCCCcccc----
Q psy15126 11 ADTPDNPLFQVIPMIRKQFPSLTIACDVCLCGYTSHGHCAIF--NEDGSIHYEKTLKRLADISKAFSDAGAHIVAP---- 84 (300)
Q Consensus 11 a~~~~~~~~~~i~~ik~~~p~l~i~~Dvclc~yt~hGHcgi~--~~~g~i~nd~Tl~~l~~~A~~~A~aGad~vAP---- 84 (300)
+.+.++.+.+|.+..+ .+|+++|=- |-|-.|--.+= ...| |.=-.|+=-=..||+..++||+.+|+|
T Consensus 62 a~d~e~mi~eA~~l~~-~~~nv~IKI-----P~T~eGl~A~~~L~~~G-I~vn~TliFS~~QA~~aa~AGa~~iSpfvgR 134 (220)
T 1l6w_A 62 ATTAEGMVNDALKLRS-IIADIVVKV-----PVTAEGLAAIKMLKAEG-IPTLGTAVYGAAQGLLSALAGAEYVAPYVNR 134 (220)
T ss_dssp CSSHHHHHHHHHHHHH-HSTTCEEEE-----ECSHHHHHHHHHHHHHT-CCEEEEEECSHHHHHHHHHHTCSEEEEBHHH
T ss_pred cCCHHHHHHHHHHHHH-hCCCEEEEe-----CCCHHHHHHHHHHHHCC-CcEEEEEeCCHHHHHHHHHCCCeEEEeccch
Confidence 4455566666655433 447655532 44433332211 1112 111111111234799999999999999
Q ss_pred --CCCCcc--hHHHHHHHHhhCCCCCCcccc
Q psy15126 85 --SDMMDN--RIHAIKQSLFTSRQSSTTGLL 111 (300)
Q Consensus 85 --SdmMDg--rv~air~aLd~~g~~~~v~Im 111 (300)
....|| .|..+++.++..|+ ++-||
T Consensus 135 idd~g~~G~~~i~~~~~~y~~~~~--~t~il 163 (220)
T 1l6w_A 135 IDAQGGSGIQTVTDLHQLLKMHAP--QAKVL 163 (220)
T ss_dssp HHHTTSCHHHHHHHHHHHHHHHCT--TCEEE
T ss_pred hhcccccHHHHHHHHHHHHHhcCC--CeEEe
Confidence 222333 36778888888887 34565
No 351
>3klo_A Transcriptional regulator VPST; REC domain, HTH domain, DNA-binding, transcription regulation; HET: C2E TAR; 2.80A {Vibrio cholerae} PDB: 3kln_A*
Probab=32.02 E-value=1.2e+02 Score=24.47 Aligned_cols=48 Identities=10% Similarity=0.047 Sum_probs=33.5
Q ss_pred cCCceeeccCcch---HHHHHHHHHh-hCCCCCEEeEecccccHHHHHHHhC
Q psy15126 213 QGADFLMVKPALP---YLDIISEVKS-RHPAYPLFVYQVSGEYAMLAFAAQA 260 (300)
Q Consensus 213 ~GADivmVkPsmm---~ld~Ir~~~d-~~~~vpi~aY~vSgeY~~~r~Aa~~ 260 (300)
.-.|+|++--.|+ =++.+++++. .+|++||+..+....-.....+.+.
T Consensus 53 ~~~dlvllD~~mp~~~G~~~~~~lr~~~~~~~~ii~lt~~~~~~~~~~~~~~ 104 (225)
T 3klo_A 53 RSIQMLVIDYSRISDDVLTDYSSFKHISCPDAKEVIINCPQDIEHKLLFKWN 104 (225)
T ss_dssp GGCCEEEEEGGGCCHHHHHHHHHHHHHHCTTCEEEEEEECTTCCHHHHTTST
T ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHhhCCCCcEEEEECCcchhHHHHHHHh
Confidence 4468888775554 6888999988 7899999999764444444444443
No 352
>2v82_A 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; lyase, kdpgal; HET: KDP; 2.1A {Escherichia coli} PDB: 2v81_A*
Probab=32.02 E-value=31 Score=28.71 Aligned_cols=39 Identities=18% Similarity=-0.025 Sum_probs=28.3
Q ss_pred hHHHHHHHHHHHHHcCCCccccCCCCcchHHHHHHHHhh
Q psy15126 63 TLKRLADISKAFSDAGAHIVAPSDMMDNRIHAIKQSLFT 101 (300)
Q Consensus 63 Tl~~l~~~A~~~A~aGad~vAPSdmMDgrv~air~aLd~ 101 (300)
+.+.+.+++..+.+.|+++|-..++-......+++....
T Consensus 17 d~~~~~~~~~~~~~~G~~~i~l~~~~~~~~~~i~~i~~~ 55 (212)
T 2v82_A 17 TPDEALAHVGAVIDAGFDAVEIPLNSPQWEQSIPAIVDA 55 (212)
T ss_dssp CHHHHHHHHHHHHHHTCCEEEEETTSTTHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCCEEEEeCCChhHHHHHHHHHHh
Confidence 466788888888999999998865555556666665544
No 353
>1gox_A (S)-2-hydroxy-acid oxidase, peroxisomal; oxidoreductase (oxygen(A)); HET: FMN; 2.00A {Spinacia oleracea} SCOP: c.1.4.1 PDB: 1gyl_A* 1al8_A* 1al7_A* 2cdh_0
Probab=31.99 E-value=1.8e+02 Score=26.84 Aligned_cols=72 Identities=18% Similarity=0.112 Sum_probs=45.7
Q ss_pred CCCCccccchhhhcCCceeeccCc--------chHHHHHHHHHhhCC-CCCEEeEecccccHHHHHHHhCCCCCHHHHHH
Q psy15126 200 NHNTDRFQARDVSQGADFLMVKPA--------LPYLDIISEVKSRHP-AYPLFVYQVSGEYAMLAFAAQAGALDLKRALM 270 (300)
Q Consensus 200 ~~n~~~~~~~Da~~GADivmVkPs--------mm~ld~Ir~~~d~~~-~vpi~aY~vSgeY~~~r~Aa~~~~~n~~eal~ 270 (300)
.-++-....+=.++|||.|.|... .+.++.++++++..+ ++||++= + |..+..++
T Consensus 232 ~~~~~e~a~~a~~~Gad~I~vs~~ggr~~~~~~~~~~~l~~v~~~~~~~ipvia~--G------------GI~~~~D~-- 295 (370)
T 1gox_A 232 GVITAEDARLAVQHGAAGIIVSNHGARQLDYVPATIMALEEVVKAAQGRIPVFLD--G------------GVRRGTDV-- 295 (370)
T ss_dssp CCCSHHHHHHHHHTTCSEEEECCGGGTSSTTCCCHHHHHHHHHHHTTTSSCEEEE--S------------SCCSHHHH--
T ss_pred ecCCHHHHHHHHHcCCCEEEECCCCCccCCCcccHHHHHHHHHHHhCCCCEEEEE--C------------CCCCHHHH--
Confidence 334444455557899999988542 147888888888743 7898764 2 33444333
Q ss_pred HHHHHHHHcCCCEEEecchH
Q psy15126 271 ETLTCLRRGGADVIISYYTP 290 (300)
Q Consensus 271 E~~~~~~r~GAD~Ii~y~A~ 290 (300)
.+.+ ..|||.+++--+.
T Consensus 296 --~k~l-~~GAdaV~iGr~~ 312 (370)
T 1gox_A 296 --FKAL-ALGAAGVFIGRPV 312 (370)
T ss_dssp --HHHH-HHTCSEEEECHHH
T ss_pred --HHHH-HcCCCEEeecHHH
Confidence 2233 4699999986543
No 354
>3w01_A Heptaprenylglyceryl phosphate synthase; biosynthesis, prenyltransferases, enzyme catalysis, transfer; HET: PGE; 1.54A {Staphylococcus aureus} PDB: 3w02_A
Probab=31.71 E-value=45 Score=30.07 Aligned_cols=35 Identities=14% Similarity=0.290 Sum_probs=26.6
Q ss_pred hhcCCceeeccCcc-h----HHHHHHHHHhhCCCCCE--EeEec
Q psy15126 211 VSQGADFLMVKPAL-P----YLDIISEVKSRHPAYPL--FVYQV 247 (300)
Q Consensus 211 a~~GADivmVkPsm-m----~ld~Ir~~~d~~~~vpi--~aY~v 247 (300)
.+.|+|.|||.=|. . -++.++++++ + ++|+ |.|+.
T Consensus 33 ~~~GtDaI~vGgs~gvt~~~~~~~v~~ik~-~-~~Piil~p~~~ 74 (235)
T 3w01_A 33 CMSQTDAIMIGGTDDVTEDNVIHLMSKIRR-Y-PLPLVLEISNI 74 (235)
T ss_dssp HTSSCSEEEECCSSCCCHHHHHHHHHHHTT-S-CSCEEEECCCS
T ss_pred HHcCCCEEEECCcCCcCHHHHHHHHHHhcC-c-CCCEEEecCCH
Confidence 58999999999984 3 5777777777 4 7887 56654
No 355
>2eja_A URO-D, UPD, uroporphyrinogen decarboxylase; dimer, X-RAY diffraction, structural genomics, NPPSFA; 1.90A {Aquifex aeolicus}
Probab=31.68 E-value=1.4e+02 Score=26.77 Aligned_cols=38 Identities=24% Similarity=0.357 Sum_probs=22.3
Q ss_pred chhhhcCCceeecc--------Ccch------HH-HHHHHHHhhCCCCCEEeEe
Q psy15126 208 ARDVSQGADFLMVK--------PALP------YL-DIISEVKSRHPAYPLFVYQ 246 (300)
Q Consensus 208 ~~Da~~GADivmVk--------Psmm------~l-d~Ir~~~d~~~~vpi~aY~ 246 (300)
...+++|||+|++. |.+. |+ .++..+++. +++|++-+.
T Consensus 186 ~~~~~aGad~i~i~d~~~~~lsp~~f~ef~~p~~k~i~~~i~~~-~g~~~i~~~ 238 (338)
T 2eja_A 186 KEQIKAGADVVQIFDSWVNNLSLEDYGEYVYPYVNYLISELKDF-SDTPVIYFF 238 (338)
T ss_dssp HHHHHTTCSEEEEEETTGGGSCHHHHHHHTHHHHHHHHHHHHHH-CCCCEEEEE
T ss_pred HHHHHhCCCEEEEecCccccCCHHHHHHHhHHHHHHHHHHHhhc-CCCCEEEEc
Confidence 44578999998653 3221 22 333344443 579988874
No 356
>2r25_B Osmosensing histidine protein kinase SLN1; alpha5-BETA5, response regulator, four helix bundle, histidine phosphotransfer (HPT) protein; 1.70A {Saccharomyces cerevisiae} SCOP: c.23.1.1 PDB: 1oxk_B 1oxb_B
Probab=31.66 E-value=1.5e+02 Score=21.63 Aligned_cols=56 Identities=11% Similarity=0.178 Sum_probs=36.4
Q ss_pred CCceeeccCcc---hHHHHHHHHHhh-CCCCCEEeEecccccHHHHHHHhCCCCCHHHHHHHHHHHHHHcCCCEEEecc
Q psy15126 214 GADFLMVKPAL---PYLDIISEVKSR-HPAYPLFVYQVSGEYAMLAFAAQAGALDLKRALMETLTCLRRGGADVIISYY 288 (300)
Q Consensus 214 GADivmVkPsm---m~ld~Ir~~~d~-~~~vpi~aY~vSgeY~~~r~Aa~~~~~n~~eal~E~~~~~~r~GAD~Ii~y~ 288 (300)
-.|+|++--.| -=++.++++++. .+.+||+..+.+...... ...+ +.||+-.+.||
T Consensus 52 ~~dlvllD~~mp~~~G~~~~~~lr~~~~~~~~ii~lt~~~~~~~~------------------~~~~-~~ga~~~l~KP 111 (133)
T 2r25_B 52 NYNMIFMDVQMPKVDGLLSTKMIRRDLGYTSPIVALTAFADDSNI------------------KECL-ESGMNGFLSKP 111 (133)
T ss_dssp CCSEEEECSCCSSSCHHHHHHHHHHHSCCCSCEEEEESCCSHHHH------------------HHHH-HTTCSEEEESS
T ss_pred CCCEEEEeCCCCCCChHHHHHHHHhhcCCCCCEEEEECCCCHHHH------------------HHHH-HcCCCEEEeCC
Confidence 45888776444 367888888864 557899988653332211 2233 57888888887
No 357
>1t35_A Hypothetical protein YVDD, putative lysine decarboxylase; structural genomics target, NYSGXRC, PSI, protein structure initiative; 2.72A {Bacillus subtilis} SCOP: c.129.1.1
Probab=31.45 E-value=88 Score=26.69 Aligned_cols=51 Identities=24% Similarity=0.222 Sum_probs=39.6
Q ss_pred CCceeeccCcch-HHHHHHHHHh-----hCCCCCEEeEecccccHHHHH----HHhCCCCCH
Q psy15126 214 GADFLMVKPALP-YLDIISEVKS-----RHPAYPLFVYQVSGEYAMLAF----AAQAGALDL 265 (300)
Q Consensus 214 GADivmVkPsmm-~ld~Ir~~~d-----~~~~vpi~aY~vSgeY~~~r~----Aa~~~~~n~ 265 (300)
=+|.++|=|+-. .|+-+-+++. .+ +.||.-|.+.|+|.++.. ..+.|.++.
T Consensus 97 ~sda~IvlPGG~GTl~El~e~lt~~q~g~~-~kPvvll~~~g~~~~l~~~l~~~~~~Gfi~~ 157 (191)
T 1t35_A 97 LADGFISMPGGFGTYEELFEVLCWAQIGIH-QKPIGLYNVNGYFEPMMKMVKYSIQEGFSNE 157 (191)
T ss_dssp HCSEEEECSCCHHHHHHHHHHHHTTSCSSC-CCCEEEECGGGTTHHHHHHHHHHHHTTSSCT
T ss_pred HCCEEEEeCCCccHHHHHHHHHHHHHhCCC-CCCEEEecCCcccchHHHHHHHHHHCCCCCH
Confidence 378999999965 8999999985 35 599999998899998754 345665544
No 358
>2pcq_A Putative dihydrodipicolinate synthase; lyase, lysine biosynthesis, dihydrodipicoliante, S genomics, NPPSFA; 2.10A {Thermus thermophilus}
Probab=31.30 E-value=61 Score=28.98 Aligned_cols=34 Identities=29% Similarity=0.494 Sum_probs=23.7
Q ss_pred hhcCCceeeccCcc---h-----HHHHHHHHHhhCCCCCEEeEec
Q psy15126 211 VSQGADFLMVKPAL---P-----YLDIISEVKSRHPAYPLFVYQV 247 (300)
Q Consensus 211 a~~GADivmVkPsm---m-----~ld~Ir~~~d~~~~vpi~aY~v 247 (300)
.+.|||.+||-|-. + -+...+++.+ ++||+-|++
T Consensus 85 ~~~Gadavlv~~P~y~~~~~~~~l~~~f~~va~---~lPiilYn~ 126 (283)
T 2pcq_A 85 KAAGAMALLATPPRYYHGSLGAGLLRYYEALAE---KMPLFLYHV 126 (283)
T ss_dssp HHHTCSEEEECCCCTTGGGTTTHHHHHHHHHHH---HSCEEEEEC
T ss_pred HhcCCCEEEecCCcCCCCCCHHHHHHHHHHHhc---CCCEEEEeC
Confidence 46799999885431 1 3455556655 699999998
No 359
>2nli_A Lactate oxidase; flavoenzyme, FMN, D-lactate, oxidoreducta; HET: FMN; 1.59A {Aerococcus viridans} PDB: 2zfa_A* 2du2_A* 2e77_A* 2j6x_A*
Probab=30.77 E-value=1.5e+02 Score=27.71 Aligned_cols=68 Identities=18% Similarity=0.186 Sum_probs=43.3
Q ss_pred CCccccchhhhcCCceeeccCc--------chHHHHHHHHHhhCC-CCCEEeEecccccHHHHHHHhCCCCCHHHHHHHH
Q psy15126 202 NTDRFQARDVSQGADFLMVKPA--------LPYLDIISEVKSRHP-AYPLFVYQVSGEYAMLAFAAQAGALDLKRALMET 272 (300)
Q Consensus 202 n~~~~~~~Da~~GADivmVkPs--------mm~ld~Ir~~~d~~~-~vpi~aY~vSgeY~~~r~Aa~~~~~n~~eal~E~ 272 (300)
++-....+=.++|||.|.|... .+.++.+.++++..+ ++||++= -|..+..++
T Consensus 238 ~~~e~a~~a~~~Gad~I~vs~~ggr~~~~g~~~~~~l~~v~~~v~~~ipVia~--------------GGI~~g~D~---- 299 (368)
T 2nli_A 238 QHPEDADMAIKRGASGIWVSNHGARQLYEAPGSFDTLPAIAERVNKRVPIVFD--------------SGVRRGEHV---- 299 (368)
T ss_dssp CSHHHHHHHHHTTCSEEEECCGGGTSCSSCCCHHHHHHHHHHHHTTSSCEEEC--------------SSCCSHHHH----
T ss_pred CCHHHHHHHHHcCCCEEEEcCCCcCCCCCCCChHHHHHHHHHHhCCCCeEEEE--------------CCCCCHHHH----
Confidence 3334444456899999999431 236788888887632 6888763 244555443
Q ss_pred HHHHHHcCCCEEEecc
Q psy15126 273 LTCLRRGGADVIISYY 288 (300)
Q Consensus 273 ~~~~~r~GAD~Ii~y~ 288 (300)
++.+ ..|||.+++--
T Consensus 300 ~kal-alGAd~V~iGr 314 (368)
T 2nli_A 300 AKAL-ASGADVVALGR 314 (368)
T ss_dssp HHHH-HTTCSEEEECH
T ss_pred HHHH-HcCCCEEEECH
Confidence 3445 47999999853
No 360
>1p0k_A Isopentenyl-diphosphate delta-isomerase; terpene biosynthesis, dimethylallyl diphosphate, flavoprotein; 1.90A {Bacillus subtilis} SCOP: c.1.4.1 PDB: 1p0n_A*
Probab=30.58 E-value=1.3e+02 Score=27.29 Aligned_cols=69 Identities=14% Similarity=0.112 Sum_probs=41.3
Q ss_pred CccccchhhhcCCceeecc--------------C----------cchHHHHHHHHHhhCCCCCEEeEecccccHHHHHHH
Q psy15126 203 TDRFQARDVSQGADFLMVK--------------P----------ALPYLDIISEVKSRHPAYPLFVYQVSGEYAMLAFAA 258 (300)
Q Consensus 203 ~~~~~~~Da~~GADivmVk--------------P----------smm~ld~Ir~~~d~~~~vpi~aY~vSgeY~~~r~Aa 258 (300)
+..+...=.++|||.|.|. + +......|+++++..+++||++=
T Consensus 191 ~~~~a~~a~~~Gad~I~v~~~ggt~~~~~e~~r~~~~~~~~~~~g~~~~~~l~~v~~~~~~ipvia~------------- 257 (349)
T 1p0k_A 191 SKASAGKLYEAGAAAVDIGGYGGTNFSKIENLRRQRQISFFNSWGISTAASLAEIRSEFPASTMIAS------------- 257 (349)
T ss_dssp CHHHHHHHHHHTCSEEEEEC---------------CCGGGGTTCSCCHHHHHHHHHHHCTTSEEEEE-------------
T ss_pred CHHHHHHHHHcCCCEEEEcCCCCcchhhHHHhhcccchhhhhccCccHHHHHHHHHHhcCCCeEEEE-------------
Confidence 3444444567899999882 1 12245667777665556777653
Q ss_pred hCCCCCHHHHHHHHHHHHHHcCCCEEEecchH
Q psy15126 259 QAGALDLKRALMETLTCLRRGGADVIISYYTP 290 (300)
Q Consensus 259 ~~~~~n~~eal~E~~~~~~r~GAD~Ii~y~A~ 290 (300)
-|..+.+++. +.+ ..|||.|++.-+.
T Consensus 258 -GGI~~~~d~~----k~l-~~GAd~V~iG~~~ 283 (349)
T 1p0k_A 258 -GGLQDALDVA----KAI-ALGASCTGMAGHF 283 (349)
T ss_dssp -SSCCSHHHHH----HHH-HTTCSEEEECHHH
T ss_pred -CCCCCHHHHH----HHH-HcCCCEEEEcHHH
Confidence 1344554332 334 4799999987643
No 361
>3l5l_A Xenobiotic reductase A; TIM barrel, oxidoreductase; HET: BU3 FMN; 1.03A {Pseudomonas putida} SCOP: c.1.4.0 PDB: 3l5m_A* 3n19_B* 3n16_A* 3l68_A* 3l67_A* 3l65_A* 3l66_A* 3n14_A* 2h8z_A* 2h90_A* 2h8x_A*
Probab=30.53 E-value=1.5e+02 Score=27.36 Aligned_cols=33 Identities=21% Similarity=0.164 Sum_probs=21.6
Q ss_pred hhcCCceeeccC----------c--chHHHHHHHHHhhCCCCCEEe
Q psy15126 211 VSQGADFLMVKP----------A--LPYLDIISEVKSRHPAYPLFV 244 (300)
Q Consensus 211 a~~GADivmVkP----------s--mm~ld~Ir~~~d~~~~vpi~a 244 (300)
.++|+|+|-|.- . ...++.++++++.+ ++||++
T Consensus 256 ~~~Gvd~i~vs~g~~~~~~~~~~~~~~~~~~~~~ir~~~-~iPVi~ 300 (363)
T 3l5l_A 256 KAGGLDLLSVSVGFTIPDTNIPWGPAFMGPIAERVRREA-KLPVTS 300 (363)
T ss_dssp HHTTCCEEEEEECCCSSCCCCCCCTTTTHHHHHHHHHHH-TCCEEE
T ss_pred HHcCCCEEEEecCccccccccCCCcchhHHHHHHHHHHc-CCcEEE
Confidence 467777775531 1 12577788888776 689886
No 362
>2ze3_A DFA0005; organic waste LEFT-OVER decomposition, alkaliphilic, ICL/PEPM superfamily, alpha-ketoglutarate LIG isomerase; HET: AKG; 1.65A {Deinococcus ficus}
Probab=30.35 E-value=49 Score=30.12 Aligned_cols=38 Identities=24% Similarity=0.333 Sum_probs=30.7
Q ss_pred HhHHHHHHHHHHHHHcCCCccccCCCCc-chHHHHHHHH
Q psy15126 62 KTLKRLADISKAFSDAGAHIVAPSDMMD-NRIHAIKQSL 99 (300)
Q Consensus 62 ~Tl~~l~~~A~~~A~aGad~vAPSdmMD-grv~air~aL 99 (300)
..++.+.+.|+.+++||||+|-+-..-+ ..+..+.+++
T Consensus 165 ~~~~~ai~Ra~ay~eAGAd~i~~e~~~~~~~~~~i~~~~ 203 (275)
T 2ze3_A 165 ERLAETVRRGQAYADAGADGIFVPLALQSQDIRALADAL 203 (275)
T ss_dssp HHHHHHHHHHHHHHHTTCSEEECTTCCCHHHHHHHHHHC
T ss_pred hhHHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHhc
Confidence 4789999999999999999998866554 5666666665
No 363
>2o55_A Putative glycerophosphodiester phosphodiesterase; beta barrel, structural genomics, protein structure initiati 2; 2.81A {Galdieria sulphuraria}
Probab=30.33 E-value=1.3e+02 Score=25.80 Aligned_cols=67 Identities=12% Similarity=0.055 Sum_probs=44.8
Q ss_pred hcCCceeeccCcch--HHHHHHHHHhhCCCCCEEeEecccccHHHHHHHhCCCCCHHHHHHHHHHHHHHcCCCEEEecch
Q psy15126 212 SQGADFLMVKPALP--YLDIISEVKSRHPAYPLFVYQVSGEYAMLAFAAQAGALDLKRALMETLTCLRRGGADVIISYYT 289 (300)
Q Consensus 212 ~~GADivmVkPsmm--~ld~Ir~~~d~~~~vpi~aY~vSgeY~~~r~Aa~~~~~n~~eal~E~~~~~~r~GAD~Ii~y~A 289 (300)
+.|++.| .|... .-+.|+++++. +++|.+|.|-. .-|..+.+ + .+.+.|+|.|+|-+-
T Consensus 187 ~~~~~~v--~~~~~~~~~~~v~~~~~~--G~~v~~wTv~~------------~~n~~~~~-~---~l~~~GvdgI~TD~p 246 (258)
T 2o55_A 187 YGDANGV--SMLFHYLTKEQVCTAHEK--GLSVTVWMPWI------------FDDSEEDW-K---KCLELQVDLICSNYP 246 (258)
T ss_dssp HTTCSEE--EEEGGGCCHHHHHHHHHT--TCEEEEECCTT------------CCCCHHHH-H---HHHHHTCSEEEESCH
T ss_pred hcCCeEE--ecChhhcCHHHHHHHHHC--CCEEEEeeCCC------------CCCCHHHH-H---HHHHcCCCEEEeCCH
Confidence 5688887 66532 35677777775 79999998721 11433322 2 233569999999988
Q ss_pred HHHHHHHhh
Q psy15126 290 PRVLEWLRE 298 (300)
Q Consensus 290 ~~~ld~l~~ 298 (300)
..+.++|++
T Consensus 247 ~~~~~~l~~ 255 (258)
T 2o55_A 247 FGLMNFLSN 255 (258)
T ss_dssp HHHHHHHTC
T ss_pred HHHHHHHHH
Confidence 888888764
No 364
>1lt8_A Betaine-homocysteine methyltransferase; homocysteine metabolism, homocysteinemia, zinc, thiol alkyl transfer; HET: CBH CIT; 2.05A {Homo sapiens} SCOP: c.1.26.1 PDB: 1lt7_A* 1umy_A
Probab=30.31 E-value=30 Score=33.33 Aligned_cols=22 Identities=18% Similarity=0.351 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHcCCCEEEec
Q psy15126 266 KRALMETLTCLRRGGADVIISY 287 (300)
Q Consensus 266 ~eal~E~~~~~~r~GAD~Ii~y 287 (300)
.++|+++.+++.++|||+|.|-
T Consensus 53 Pe~V~~iH~~Yl~AGAdII~TN 74 (406)
T 1lt8_A 53 PEAVRQLHREFLRAGSNVMQTF 74 (406)
T ss_dssp HHHHHHHHHHHHHTTCSEEECS
T ss_pred HHHHHHHHHHHHHhCccceecc
Confidence 5899999999999999999874
No 365
>1ydn_A Hydroxymethylglutaryl-COA lyase; TIM-barrel protein, structural genomics, PSI, protein struct initiative; 2.30A {Brucella melitensis}
Probab=30.03 E-value=1.4e+02 Score=26.49 Aligned_cols=36 Identities=19% Similarity=0.157 Sum_probs=25.8
Q ss_pred hhcCCceeeccCc----ch--HHHHHHHHHhhCCCCCEEeEe
Q psy15126 211 VSQGADFLMVKPA----LP--YLDIISEVKSRHPAYPLFVYQ 246 (300)
Q Consensus 211 a~~GADivmVkPs----mm--~ld~Ir~~~d~~~~vpi~aY~ 246 (300)
.+.|||.|.++=. .| +-+.++.+++..+++||-.+.
T Consensus 165 ~~~G~d~i~l~Dt~G~~~P~~~~~lv~~l~~~~~~~~l~~H~ 206 (295)
T 1ydn_A 165 FSLGCHEVSLGDTIGRGTPDTVAAMLDAVLAIAPAHSLAGHY 206 (295)
T ss_dssp HHHTCSEEEEEETTSCCCHHHHHHHHHHHHTTSCGGGEEEEE
T ss_pred HhcCCCEEEecCCCCCcCHHHHHHHHHHHHHhCCCCeEEEEE
Confidence 4789999876622 22 678888888887668876664
No 366
>3cu5_A Two component transcriptional regulator, ARAC FAM; structural genomics, protein structure initiative; 2.60A {Clostridium phytofermentans isdg}
Probab=29.85 E-value=96 Score=22.98 Aligned_cols=35 Identities=6% Similarity=0.207 Sum_probs=26.4
Q ss_pred cCCceeeccCcc---hHHHHHHHHHhhCCCCCEEeEec
Q psy15126 213 QGADFLMVKPAL---PYLDIISEVKSRHPAYPLFVYQV 247 (300)
Q Consensus 213 ~GADivmVkPsm---m~ld~Ir~~~d~~~~vpi~aY~v 247 (300)
...|+|++--.| .-++.++++++.++++||+..+.
T Consensus 48 ~~~dlvllD~~lp~~~g~~l~~~l~~~~~~~~ii~ls~ 85 (141)
T 3cu5_A 48 HPPNVLLTDVRMPRMDGIELVDNILKLYPDCSVIFMSG 85 (141)
T ss_dssp SCCSEEEEESCCSSSCHHHHHHHHHHHCTTCEEEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhhCCCCcEEEEeC
Confidence 346888776444 36788888888888999999855
No 367
>1g8m_A Aicar transformylase-IMP cyclohydrolase; homodimer, 2 functional domains, IMPCH domain = alpha/beta/alpha; HET: G; 1.75A {Gallus gallus} SCOP: c.24.1.3 c.97.1.4 PDB: 1thz_A* 2b1g_A* 2b1i_A* 2iu0_A* 2iu3_A* 1m9n_A* 1oz0_A* 1pkx_A* 1p4r_A* 1pl0_A*
Probab=29.75 E-value=1.8e+02 Score=29.89 Aligned_cols=44 Identities=16% Similarity=0.151 Sum_probs=28.6
Q ss_pred hhcCCceeeccCcchHHHHHHHHHhhCCCCCEEeEecccccHHHHHHHhCCCC
Q psy15126 211 VSQGADFLMVKPALPYLDIISEVKSRHPAYPLFVYQVSGEYAMLAFAAQAGAL 263 (300)
Q Consensus 211 a~~GADivmVkPsmm~ld~Ir~~~d~~~~vpi~aY~vSgeY~~~r~Aa~~~~~ 263 (300)
+=|--||= .|+| ||.+-+.|.+|-|.+= -.-|..+-...+.|-.
T Consensus 121 ~iEnIDIG--Gptm-----lRaAAKN~~~V~Vv~d--p~dY~~vl~el~~g~~ 164 (593)
T 1g8m_A 121 AVEKIDIG--GVAL-----LRAAAKNHARVTVVCD--PADYSSVAKEMAASKD 164 (593)
T ss_dssp HHTTCCSH--HHHH-----HHHHHHTTTTCEEECC--GGGHHHHHHHHHTSTT
T ss_pred HHhhCCCC--cHHH-----HHHHHhCCCCEEEECC--HHHHHHHHHHHHhCCC
Confidence 44555665 6664 5666667777777765 5577777777766544
No 368
>2yr1_A 3-dehydroquinate dehydratase; amino acid biosynthesis, 3-dehydroquinase, structural genomi NPPSFA; 2.00A {Geobacillus kaustophilus}
Probab=29.74 E-value=71 Score=28.47 Aligned_cols=43 Identities=30% Similarity=0.396 Sum_probs=26.3
Q ss_pred hhcCCceeeccCc-ch--H------HHHHHHHHhhCCCCCEEeEecccccHHHHHH
Q psy15126 211 VSQGADFLMVKPA-LP--Y------LDIISEVKSRHPAYPLFVYQVSGEYAMLAFA 257 (300)
Q Consensus 211 a~~GADivmVkPs-mm--~------ld~Ir~~~d~~~~vpi~aY~vSgeY~~~r~A 257 (300)
.+.|||++ |=+ |+ . +.+.++. +.+++.|+.+|+. |+.|.+-..
T Consensus 166 ~~~gaDiv--Kia~~a~s~~D~l~ll~~~~~~-~~~~~~P~I~~~M-G~~G~~SRi 217 (257)
T 2yr1_A 166 ERYGADIA--KVAVMPKSPEDVLVLLQATEEA-RRELAIPLITMAM-GGLGAITRL 217 (257)
T ss_dssp HHTTCSEE--EEEECCSSHHHHHHHHHHHHHH-HHHCSSCEEEEEC-TTTTHHHHH
T ss_pred HhcCCCEE--EEEeccCCHHHHHHHHHHHHHH-hccCCCCEEEEEC-CCCcchHHH
Confidence 56899998 655 33 2 2223333 2356899999975 666654433
No 369
>3eeg_A 2-isopropylmalate synthase; 11106D, beta barrel, PSI-II, structural genomics, protein structure initiative; 2.78A {Cytophaga hutchinsonii atcc 33406}
Probab=29.61 E-value=98 Score=28.46 Aligned_cols=70 Identities=23% Similarity=0.208 Sum_probs=0.0
Q ss_pred hHHHHHHHHHhhhcccccCCCCCccccchhhhcCCceeeccCc--ch----HHHHHHHHHhhCCC---CCEEeEeccccc
Q psy15126 181 TLKRLADISKAFSDAVYVPNHNTDRFQARDVSQGADFLMVKPA--LP----YLDIISEVKSRHPA---YPLFVYQVSGEY 251 (300)
Q Consensus 181 tl~~l~~~a~~~a~~~~~~~~n~~~~~~~Da~~GADivmVkPs--mm----~ld~Ir~~~d~~~~---vpi~aY~vSgeY 251 (300)
+.+.+.+++... .+.|||.|-++=. .+ .-+.|+.+++.+++ +||-.+.=
T Consensus 149 ~~~~~~~~~~~~------------------~~~G~~~i~l~DT~G~~~P~~v~~lv~~l~~~~~~~~~~~i~~H~H---- 206 (325)
T 3eeg_A 149 DQAFLARMVEAV------------------IEAGADVVNIPDTTGYMLPWQYGERIKYLMDNVSNIDKAILSAHCH---- 206 (325)
T ss_dssp CHHHHHHHHHHH------------------HHHTCSEEECCBSSSCCCHHHHHHHHHHHHHHCSCGGGSEEEECBC----
T ss_pred hHHHHHHHHHHH------------------HhcCCCEEEecCccCCcCHHHHHHHHHHHHHhCCCCCceEEEEEeC----
Q ss_pred HHHHHHHhCCCCCHHHHHHHHHHHHHHcCCCEE
Q psy15126 252 AMLAFAAQAGALDLKRALMETLTCLRRGGADVI 284 (300)
Q Consensus 252 ~~~r~Aa~~~~~n~~eal~E~~~~~~r~GAD~I 284 (300)
=|.--|+--++..+ ++||+.|
T Consensus 207 -----------nd~GlA~AN~laA~-~aGa~~v 227 (325)
T 3eeg_A 207 -----------NDLGLATANSLAAL-QNGARQV 227 (325)
T ss_dssp -----------CTTSCHHHHHHHHH-HHTCCEE
T ss_pred -----------CCCCHHHHHHHHHH-HhCCCEE
No 370
>3rmj_A 2-isopropylmalate synthase; LEUA, truncation, neisseria MENI TIM barrel, catalytic domain, dimer, leucine biosynthesis, ketoisovalerate; 1.95A {Neisseria meningitidis}
Probab=29.51 E-value=1e+02 Score=29.01 Aligned_cols=44 Identities=16% Similarity=0.202 Sum_probs=30.2
Q ss_pred CCcEEEeeecCCCCCCCCcceeeCCCCceecHHhHHHHHHHHHHHHHcCCCcccc
Q psy15126 30 PSLTIACDVCLCGYTSHGHCAIFNEDGSIHYEKTLKRLADISKAFSDAGAHIVAP 84 (300)
Q Consensus 30 p~l~i~~Dvclc~yt~hGHcgi~~~~g~i~nd~Tl~~l~~~A~~~A~aGad~vAP 84 (300)
|+-+.|.|+.|= |-....-...|.+.-.+++..+.++|.+.|--
T Consensus 10 ~~~v~I~DtTLR-----------DG~Q~~~~~~~~~~Kl~ia~~L~~~Gv~~IE~ 53 (370)
T 3rmj_A 10 TNRVIIFDTTLR-----------DGEQSPGAAMTKEEKIRVARQLEKLGVDIIEA 53 (370)
T ss_dssp CCBCEEEECCCC-----------CCTTSTTCCCCHHHHHHHHHHHHHHTCSEEEE
T ss_pred CCCEEEEECCCC-----------ccccCCCCCcCHHHHHHHHHHHHHcCCCEEEE
Confidence 555667777662 11112223578999999999999999998843
No 371
>1wx0_A Transaldolase; structural genomics, riken structural genomics/proteomics initiative, RSGI, transferas; 2.27A {Thermus thermophilus HB8} SCOP: c.1.10.1
Probab=29.48 E-value=46 Score=29.53 Aligned_cols=92 Identities=18% Similarity=0.180 Sum_probs=50.1
Q ss_pred CCCCCChHHHHHHHHHHhCCCcEEEeeecCCCCCCCCccee--eCCCCceecHHhHHHHHHHHHHHHHcCCCcccc----
Q psy15126 11 ADTPDNPLFQVIPMIRKQFPSLTIACDVCLCGYTSHGHCAI--FNEDGSIHYEKTLKRLADISKAFSDAGAHIVAP---- 84 (300)
Q Consensus 11 a~~~~~~~~~~i~~ik~~~p~l~i~~Dvclc~yt~hGHcgi--~~~~g~i~nd~Tl~~l~~~A~~~A~aGad~vAP---- 84 (300)
+++.++.+.+|.+..+ .+|+++|=- |-|-.|.-.+ +...| |.=-.|+=-=..||+..|++|+.+|+|
T Consensus 69 a~d~e~~i~eA~~l~~-~~~nv~IKI-----P~T~eGl~A~~~L~~~G-I~vN~TliFS~~Qa~~aa~AGa~~iSpFVgR 141 (223)
T 1wx0_A 69 ALEAEAMVAEGRRLAA-IHPNIVVKL-----PTTEEGLKACKRLSAEG-IKVNMTLIFSANQALLAARAGASYVSPFLGR 141 (223)
T ss_dssp CSSHHHHHHHHHHHHH-HCTTEEEEE-----ESSHHHHHHHHHHHHTT-CCEEEEEECSHHHHHHHHHTTCSEEEEBHHH
T ss_pred cCCHHHHHHHHHHHHh-hCCCEEEEe-----CCCHHHHHHHHHHHHCC-CcEEEEEeCCHHHHHHHHHCCCeEEEeccch
Confidence 3445556666655443 446655422 4444333222 11122 111122222234889999999999999
Q ss_pred --CCCCcc--hHHHHHHHHhhCCCCCCcccc
Q psy15126 85 --SDMMDN--RIHAIKQSLFTSRQSSTTGLL 111 (300)
Q Consensus 85 --SdmMDg--rv~air~aLd~~g~~~~v~Im 111 (300)
....|| .|..+++.++..|+ ++-||
T Consensus 142 idd~g~~G~~~v~~i~~~~~~~~~--~t~vl 170 (223)
T 1wx0_A 142 VDDISWDGGELLREIVEMIQVQDL--PVKVI 170 (223)
T ss_dssp HHHTTSCHHHHHHHHHHHHHHTTC--SCEEE
T ss_pred HhhcCCCHHHHHHHHHHHHHHcCC--CeEEe
Confidence 122233 37778888888887 45566
No 372
>3s99_A Basic membrane lipoprotein; ssgcid, structural genomics, SEA structural genomics center for infectious disease, adenine; HET: ADE; 2.05A {Brucella melitensis biovar abortus}
Probab=29.19 E-value=77 Score=29.28 Aligned_cols=65 Identities=14% Similarity=0.248 Sum_probs=39.6
Q ss_pred chHhHHHHHHHHHhh---hcccccCCCCCc----cccchhhhcCCceeeccCcchHHHHHHHHHhhCCCCCEE
Q psy15126 178 YEKTLKRLADISKAF---SDAVYVPNHNTD----RFQARDVSQGADFLMVKPALPYLDIISEVKSRHPAYPLF 243 (300)
Q Consensus 178 nd~tl~~l~~~a~~~---a~~~~~~~~n~~----~~~~~Da~~GADivmVkPsmm~ld~Ir~~~d~~~~vpi~ 243 (300)
|....+-+-+.+..+ -+..|+.+.+.+ +.+..=++.|+|+|+ .++-.+-+.+.++.++||++|++
T Consensus 43 ~~~~~~G~~~~~~~~G~~~~~~~~e~~~~~~d~~~~l~~l~~~g~d~Ii-~~g~~~~~~~~~vA~~~Pdv~fv 114 (356)
T 3s99_A 43 TYQHDQARKELVEALGDKVETTFLENVAEGADAERSIKRIARAGNKLIF-TTSFGYMDPTVKVAKKFPDVKFE 114 (356)
T ss_dssp HHHHHHHHHHHHHHHTTTEEEEEECSCCTTHHHHHHHHHHHHTTCSEEE-ECSGGGHHHHHHHHTTCTTSEEE
T ss_pred HHHHHHHHHHHHHHhCCceEEEEEecCCCHHHHHHHHHHHHHCCCCEEE-ECCHHHHHHHHHHHHHCCCCEEE
Confidence 344445555544444 245566554332 233344678999774 55655678888888889988876
No 373
>3k13_A 5-methyltetrahydrofolate-homocysteine methyltrans; 5-methyltetrahydrofolate,methyltransferase, TIM barrel, STRU genomics, PSI-2; HET: MSE THH GOL; 2.00A {Bacteroides thetaiotaomicron}
Probab=29.17 E-value=1.6e+02 Score=27.12 Aligned_cols=75 Identities=16% Similarity=0.315 Sum_probs=43.2
Q ss_pred hhcCCceeeccCcch----------HHHHHHHHHhhCCCCCEEeEecccccHHHHHHHh--CC--CC------CHHHHHH
Q psy15126 211 VSQGADFLMVKPALP----------YLDIISEVKSRHPAYPLFVYQVSGEYAMLAFAAQ--AG--AL------DLKRALM 270 (300)
Q Consensus 211 a~~GADivmVkPsmm----------~ld~Ir~~~d~~~~vpi~aY~vSgeY~~~r~Aa~--~~--~~------n~~eal~ 270 (300)
+++|||||=|.-+.. .+.+|+...+. .++||+.= |....-+++|.+ .| .+ ..++-+.
T Consensus 47 v~~GAdiIDIg~g~~~v~~~eem~rvv~~i~~~~~~-~~vpisID--T~~~~V~eaaL~~~~Ga~iINdIs~~~~d~~~~ 123 (300)
T 3k13_A 47 VEDGALVIDVNMDDGLLDARTEMTTFLNLIMSEPEI-ARVPVMID--SSKWEVIEAGLKCLQGKSIVNSISLKEGEEVFL 123 (300)
T ss_dssp HHTTCSEEEEECCCTTSCHHHHHHHHHHHHHTCHHH-HTSCEEEE--CSCHHHHHHHHHHCSSCCEEEEECSTTCHHHHH
T ss_pred HHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHhhhc-CCCeEEEe--CCCHHHHHHHHHhcCCCCEEEeCCcccCChhHH
Confidence 899999997653311 34444433333 47888776 556777777777 44 11 1133333
Q ss_pred HHHHHHHHcCCCEEEecc
Q psy15126 271 ETLTCLRRGGADVIISYY 288 (300)
Q Consensus 271 E~~~~~~r~GAD~Ii~y~ 288 (300)
+.+.-+++-||-+|+...
T Consensus 124 ~~~~l~a~~ga~vV~mh~ 141 (300)
T 3k13_A 124 EHARIIKQYGAATVVMAF 141 (300)
T ss_dssp HHHHHHHHHTCEEEEESE
T ss_pred HHHHHHHHhCCeEEEEee
Confidence 444444556887776654
No 374
>1z41_A YQJM, probable NADH-dependent flavin oxidoreductase YQJ; FMN, beta-alpha-barrel; HET: FMN; 1.30A {Bacillus subtilis} SCOP: c.1.4.1 PDB: 1z42_A* 1z44_A* 1z48_A*
Probab=29.16 E-value=3.1e+02 Score=24.77 Aligned_cols=81 Identities=25% Similarity=0.375 Sum_probs=0.0
Q ss_pred hHhHHHHHHHHHhhhcccccCCCCCccccchhhhcCCceeeccCcchH----------------------------HHHH
Q psy15126 179 EKTLKRLADISKAFSDAVYVPNHNTDRFQARDVSQGADFLMVKPALPY----------------------------LDII 230 (300)
Q Consensus 179 d~tl~~l~~~a~~~a~~~~~~~~n~~~~~~~Da~~GADivmVkPsmm~----------------------------ld~I 230 (300)
+++++.+++.|... .++|.|.|=+..+.-| +++|
T Consensus 140 ~~~i~~~~~aA~~a------------------~~aGfDgVeih~~~gyLl~qFlsp~~n~R~d~yGGslenr~r~~~eiv 201 (338)
T 1z41_A 140 KETVQEFKQAAARA------------------KEAGFDVIEIHAAHGYLIHEFLSPLSNHRTDEYGGSPENRYRFLREII 201 (338)
T ss_dssp HHHHHHHHHHHHHH------------------HHTTCSEEEEEECTTSHHHHHHCTTTCCCCSTTSSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH------------------HHcCCCEEEeccccchHHHHccCCCcCCcCcccCcchhhhHHHHHHHH
Q ss_pred HHHHhhCCCCCEEeEecccccHHHHHHHhCCCCCHHHHHHHHHHHHHHcCCCEEEe
Q psy15126 231 SEVKSRHPAYPLFVYQVSGEYAMLAFAAQAGALDLKRALMETLTCLRRGGADVIIS 286 (300)
Q Consensus 231 r~~~d~~~~vpi~aY~vSgeY~~~r~Aa~~~~~n~~eal~E~~~~~~r~GAD~Ii~ 286 (300)
+.+++.. +.||..=-...+|.. +-.+.++ ..|....+.++|+|.|-+
T Consensus 202 ~avr~~v-~~pv~vris~~~~~~-------~g~~~~~-~~~~a~~l~~~Gvd~i~v 248 (338)
T 1z41_A 202 DEVKQVW-DGPLFVRVSASDYTD-------KGLDIAD-HIGFAKWMKEQGVDLIDC 248 (338)
T ss_dssp HHHHHHC-CSCEEEEEECCCCST-------TSCCHHH-HHHHHHHHHHTTCCEEEE
T ss_pred HHHHHHc-CCcEEEEecCcccCC-------CCCCHHH-HHHHHHHHHHcCCCEEEE
No 375
>1xg4_A Probable methylisocitrate lyase; 2-methylisocitrate lyase/inhibitor complex, isocitrate lyase superfamily; HET: ICT; 1.60A {Escherichia coli} PDB: 1xg3_A* 1mum_A 1oqf_A 1ujq_A 1o5q_A
Probab=29.03 E-value=52 Score=30.33 Aligned_cols=39 Identities=15% Similarity=0.339 Sum_probs=31.3
Q ss_pred HhHHHHHHHHHHHHHcCCCccccCCCCc-chHHHHHHHHh
Q psy15126 62 KTLKRLADISKAFSDAGAHIVAPSDMMD-NRIHAIKQSLF 100 (300)
Q Consensus 62 ~Tl~~l~~~A~~~A~aGad~vAPSdmMD-grv~air~aLd 100 (300)
..++.+.+.|+.+++||||+|-+-..-+ ..+..+.+++.
T Consensus 164 ~gl~~ai~ra~ay~eAGAd~i~~e~~~~~~~~~~i~~~~~ 203 (295)
T 1xg4_A 164 EGLDAAIERAQAYVEAGAEMLFPEAITELAMYRQFADAVQ 203 (295)
T ss_dssp HCHHHHHHHHHHHHHTTCSEEEETTCCSHHHHHHHHHHHC
T ss_pred cCHHHHHHHHHHHHHcCCCEEEEeCCCCHHHHHHHHHHcC
Confidence 3468999999999999999998866654 56777777773
No 376
>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}
Probab=29.01 E-value=1.9e+02 Score=22.07 Aligned_cols=35 Identities=14% Similarity=0.313 Sum_probs=24.2
Q ss_pred cCCceeecc-Ccch-HHHHHHHHHhhCCCCCEEeEec
Q psy15126 213 QGADFLMVK-PALP-YLDIISEVKSRHPAYPLFVYQV 247 (300)
Q Consensus 213 ~GADivmVk-Psmm-~ld~Ir~~~d~~~~vpi~aY~v 247 (300)
.+||+|++. |+.. -+.++..++..+|+..|.+-.-
T Consensus 70 ~~ad~vi~~~~~~~~n~~~~~~a~~~~~~~~iiar~~ 106 (140)
T 3fwz_A 70 ECAKWLILTIPNGYEAGEIVASARAKNPDIEIIARAH 106 (140)
T ss_dssp GGCSEEEECCSCHHHHHHHHHHHHHHCSSSEEEEEES
T ss_pred ccCCEEEEECCChHHHHHHHHHHHHHCCCCeEEEEEC
Confidence 479998876 4433 4445666777778888888753
No 377
>1to3_A Putative aldolase YIHT; beta-alpha barrel, structural genomics, PSI, protein structure initiative; 2.70A {Salmonella typhimurium} SCOP: c.1.10.1
Probab=28.68 E-value=2.2e+02 Score=25.86 Aligned_cols=66 Identities=17% Similarity=0.239 Sum_probs=39.3
Q ss_pred hhcCCceee----ccCcc---hHHHHHHHHHhh---CCCCCEEeEec------ccccHHHHHHHhCCCCCHHHHHHHHHH
Q psy15126 211 VSQGADFLM----VKPAL---PYLDIISEVKSR---HPAYPLFVYQV------SGEYAMLAFAAQAGALDLKRALMETLT 274 (300)
Q Consensus 211 a~~GADivm----VkPsm---m~ld~Ir~~~d~---~~~vpi~aY~v------SgeY~~~r~Aa~~~~~n~~eal~E~~~ 274 (300)
++.|||+|- .-|.. .++..++++.+. + ++|++.=-. .-+..+ .+.+.+...
T Consensus 118 ~~~GAdaV~vlv~~~~d~~~~~~~~~i~~v~~~~~~~-G~p~lv~~~~~g~~v~~~~~~------------~~~v~~aa~ 184 (304)
T 1to3_A 118 KRDGAKALKLLVLWRSDEDAQQRLNMVKEFNELCHSN-GLLSIIEPVVRPPRCGDKFDR------------EQAIIDAAK 184 (304)
T ss_dssp HHTTCCEEEEEEEECTTSCHHHHHHHHHHHHHHHHTT-TCEEEEEEEECCCSSCSCCCH------------HHHHHHHHH
T ss_pred HHcCCCEEEEEEEcCCCccHHHHHHHHHHHHHHHHHc-CCcEEEEEECCCCccccCCCh------------hHHHHHHHH
Confidence 678999993 22433 155555555544 5 788664311 111111 256677666
Q ss_pred HHHHcCCCEEEecch
Q psy15126 275 CLRRGGADVIISYYT 289 (300)
Q Consensus 275 ~~~r~GAD~Ii~y~A 289 (300)
-..+.|||+|=+++.
T Consensus 185 ~a~~lGaD~iKv~~~ 199 (304)
T 1to3_A 185 ELGDSGADLYKVEMP 199 (304)
T ss_dssp HHTTSSCSEEEECCG
T ss_pred HHHHcCCCEEEeCCC
Confidence 666789999988874
No 378
>3ffs_A Inosine-5-monophosphate dehydrogenase; beta-alpha barrel, TIM fold, oxidoreductase; 3.19A {Cryptosporidium parvum}
Probab=28.63 E-value=1.6e+02 Score=28.22 Aligned_cols=57 Identities=23% Similarity=0.316 Sum_probs=36.0
Q ss_pred hhcCCceeecc--Cc------------chHHHHHHHHHhh--CCCCCEEeEecccccHHHHHHHhCCCCCHHHHHHHHHH
Q psy15126 211 VSQGADFLMVK--PA------------LPYLDIISEVKSR--HPAYPLFVYQVSGEYAMLAFAAQAGALDLKRALMETLT 274 (300)
Q Consensus 211 a~~GADivmVk--Ps------------mm~ld~Ir~~~d~--~~~vpi~aY~vSgeY~~~r~Aa~~~~~n~~eal~E~~~ 274 (300)
+++|||+|.|. |+ .+.+..|+++.+. ..++||++= =|..+.+ +...
T Consensus 202 ~~aGAD~I~vG~g~Gs~~~tr~~~g~g~p~~~al~~v~~~~~~~~IPVIA~--------------GGI~~~~----di~k 263 (400)
T 3ffs_A 202 IENGADGIKVGIGPGSICTTRIVAGVGVPQITAIEKCSSVASKFGIPIIAD--------------GGIRYSG----DIGK 263 (400)
T ss_dssp HHTTCSEEEECC---------CCSCBCCCHHHHHHHHHHHHTTTTCCEEEE--------------SCCCSHH----HHHH
T ss_pred HHcCCCEEEEeCCCCcCcccccccccchhHHHHHHHHHHHHHhcCCCEEec--------------CCCCCHH----HHHH
Confidence 68999999884 21 2467777777654 247898873 1333443 2333
Q ss_pred HHHHcCCCEEEe
Q psy15126 275 CLRRGGADVIIS 286 (300)
Q Consensus 275 ~~~r~GAD~Ii~ 286 (300)
.+ ..|||.||+
T Consensus 264 al-alGAd~V~v 274 (400)
T 3ffs_A 264 AL-AVGASSVMI 274 (400)
T ss_dssp HH-TTTCSEEEE
T ss_pred HH-HcCCCEEEE
Confidence 44 579999886
No 379
>3qvl_A Putative hydantoin racemase; isomerase; HET: 5HY; 1.82A {Klebsiella pneumoniae subsp} PDB: 3qvk_A* 3qvj_A
Probab=28.56 E-value=17 Score=32.08 Aligned_cols=66 Identities=11% Similarity=0.142 Sum_probs=40.0
Q ss_pred eeeccCcc-h-HHHHHHHHHhh--CCCCCEEeEecccccHHHHHHHhC--CCCCHHHHHHHHHHHHHHcCCCEEEe
Q psy15126 217 FLMVKPAL-P-YLDIISEVKSR--HPAYPLFVYQVSGEYAMLAFAAQA--GALDLKRALMETLTCLRRGGADVIIS 286 (300)
Q Consensus 217 ivmVkPsm-m-~ld~Ir~~~d~--~~~vpi~aY~vSgeY~~~r~Aa~~--~~~n~~eal~E~~~~~~r~GAD~Ii~ 286 (300)
|++|-|.. . +-+.|++.... .|++.|..|++ .|||- ..+. +|.-.-..+.|.+..+.++|+|.|++
T Consensus 4 ilvINPnts~~~T~~i~~~~~~~~~p~~~i~~~t~--~~gp~--~i~~~~d~~~a~~~l~~~~~~l~~~g~d~ivi 75 (245)
T 3qvl_A 4 IQVINPNTSLAMTETIGAAARAVAAPGTEILAVCP--RAGVP--SIEGHFDEAIAAVGVLEQIRAGREQGVDGHVI 75 (245)
T ss_dssp EEEECSSCCHHHHHHHHHHHHHHCCTTEEEEEECC--SSSCS--SCCSHHHHHHHHHHHHHHHHHHHHHTCSEEEE
T ss_pred EEEEeCCCCHHHHHHHHHHHHHhcCCCCEEEEEeC--CCCch--hhcChhHHHHHHHHHHHHHHHHHHCCCCEEEE
Confidence 45667852 2 44566655544 68899998855 57762 1111 12222345577777776789999876
No 380
>3hgj_A Chromate reductase; TIM barrel, oxidoreductase; HET: FMN; 2.00A {Thermus scotoductus} SCOP: c.1.4.0 PDB: 3hf3_A*
Probab=28.47 E-value=49 Score=30.45 Aligned_cols=56 Identities=18% Similarity=0.313 Sum_probs=41.1
Q ss_pred hHHHHHHHHHHhCC-CcEEEeeecCCCCCCCCcceeeCCCCceecHHhHHHHHHHHHHHHHcCCCccccCC
Q psy15126 17 PLFQVIPMIRKQFP-SLTIACDVCLCGYTSHGHCAIFNEDGSIHYEKTLKRLADISKAFSDAGAHIVAPSD 86 (300)
Q Consensus 17 ~~~~~i~~ik~~~p-~l~i~~Dvclc~yt~hGHcgi~~~~g~i~nd~Tl~~l~~~A~~~A~aGad~vAPSd 86 (300)
.+.+.++++|+..+ +..|..-+....|.. +| . |++...+.+..+.++|+|.|..+.
T Consensus 204 ~~~eiv~aVR~avG~d~pV~vRls~~~~~~---------~g-~----~~~~~~~la~~L~~~Gvd~i~vs~ 260 (349)
T 3hgj_A 204 FPLQVAQAVREVVPRELPLFVRVSATDWGE---------GG-W----SLEDTLAFARRLKELGVDLLDCSS 260 (349)
T ss_dssp HHHHHHHHHHHHSCTTSCEEEEEESCCCST---------TS-C----CHHHHHHHHHHHHHTTCCEEEEEC
T ss_pred HHHHHHHHHHHHhcCCceEEEEeccccccC---------CC-C----CHHHHHHHHHHHHHcCCCEEEEec
Confidence 46778999999996 677887777766532 12 2 345567788888999999998764
No 381
>3oa3_A Aldolase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, pathogenic fungus; 1.60A {Coccidioides immitis}
Probab=28.41 E-value=3.6e+02 Score=25.01 Aligned_cols=65 Identities=17% Similarity=0.243 Sum_probs=43.6
Q ss_pred hhcCCceeeccCcch---------HHHHHHHHHhh-CCCCCEEeEecccccHHHHHHHhCCCCCHHHHHHHHHHHHHHcC
Q psy15126 211 VSQGADFLMVKPALP---------YLDIISEVKSR-HPAYPLFVYQVSGEYAMLAFAAQAGALDLKRALMETLTCLRRGG 280 (300)
Q Consensus 211 a~~GADivmVkPsmm---------~ld~Ir~~~d~-~~~vpi~aY~vSgeY~~~r~Aa~~~~~n~~eal~E~~~~~~r~G 280 (300)
+++|||+| |-|.= -+..+|++.+. -..+||-+- | |+.+.++ ++ .+.++|
T Consensus 198 ~eaGADfV--KTSTGf~~~GAT~edv~lmr~~v~~~g~~v~VKAA---G-----------GIrt~ed----Al-~mi~aG 256 (288)
T 3oa3_A 198 SLAGADYV--KTSTGFNGPGASIENVSLMSAVCDSLQSETRVKAS---G-----------GIRTIED----CV-KMVRAG 256 (288)
T ss_dssp HHTTCSEE--ECCCSSSSCCCCHHHHHHHHHHHHHSSSCCEEEEE---S-----------SCCSHHH----HH-HHHHTT
T ss_pred HHcCCCEE--EcCCCCCCCCCCHHHHHHHHHHHHHhCCCceEEEe---C-----------CCCCHHH----HH-HHHHcC
Confidence 68999999 88721 46777777653 245777654 2 3444432 23 333799
Q ss_pred CCEEEecchHHHHHHH
Q psy15126 281 ADVIISYYTPRVLEWL 296 (300)
Q Consensus 281 AD~Ii~y~A~~~ld~l 296 (300)
|+-|=|..+..+++-.
T Consensus 257 A~RiGtS~g~~I~~~~ 272 (288)
T 3oa3_A 257 AERLGASAGVKIVNET 272 (288)
T ss_dssp CSEEEESCHHHHHHHH
T ss_pred CceeehhhHHHHHHHH
Confidence 9999999998888754
No 382
>1zlp_A PSR132, petal death protein; TIM-barrel, helix swapping,2-ethyl-3-methylmalate lyase, 2-P methylmalate lyase, lyase/PEP mutase superfamily; 2.70A {Dianthus caryophyllus}
Probab=28.34 E-value=46 Score=31.20 Aligned_cols=38 Identities=11% Similarity=0.173 Sum_probs=30.0
Q ss_pred HhHHHHHHHHHHHHHcCCCccccCCCCc-chHHHHHHHH
Q psy15126 62 KTLKRLADISKAFSDAGAHIVAPSDMMD-NRIHAIKQSL 99 (300)
Q Consensus 62 ~Tl~~l~~~A~~~A~aGad~vAPSdmMD-grv~air~aL 99 (300)
..++.+.+.|+.+++||||+|-+-..-+ ..+..+.+++
T Consensus 186 ~gl~~ai~Ra~Ay~eAGAd~i~~e~~~~~e~~~~i~~~l 224 (318)
T 1zlp_A 186 HGLEEGIRRANLYKEAGADATFVEAPANVDELKEVSAKT 224 (318)
T ss_dssp HHHHHHHHHHHHHHHTTCSEEEECCCCSHHHHHHHHHHS
T ss_pred cCHHHHHHHHHHHHHcCCCEEEEcCCCCHHHHHHHHHhc
Confidence 3578999999999999999998866555 5566666665
No 383
>1s4d_A Uroporphyrin-III C-methyltransferase; tetrapyrrole biosynthesis, cobalamin, SAM, SAH, uroporphyrin methyltransferase; HET: SAH; 2.70A {Pseudomonas denitrificans} SCOP: c.90.1.1
Probab=28.32 E-value=2e+02 Score=25.42 Aligned_cols=90 Identities=8% Similarity=0.080 Sum_probs=56.8
Q ss_pred cccCCCCCChHHHHHHHHHHhCCCcEEEeeecCCCCCCCCcceeeCCCCce--------ecHHhHHHHHHHHHHHHHcCC
Q psy15126 8 ASFADTPDNPLFQVIPMIRKQFPSLTIACDVCLCGYTSHGHCAIFNEDGSI--------HYEKTLKRLADISKAFSDAGA 79 (300)
Q Consensus 8 ~s~a~~~~~~~~~~i~~ik~~~p~l~i~~Dvclc~yt~hGHcgi~~~~g~i--------~nd~Tl~~l~~~A~~~A~aGa 79 (300)
|..--+|+-+..||++.|++. ++++. |. +.+.-+-..+..+-.+ ....+.+.+.+..+.+++.|-
T Consensus 21 G~GpGd~~lLTl~A~~~L~~A--DvV~~-d~----~~~~~ll~~~~~~~~~~~~~k~~~~~~~~~~~i~~~l~~~~~~G~ 93 (280)
T 1s4d_A 21 GAGPGDPGLLTLHAANALRQA--DVIVH-DA----LVNEDCLKLARPGAVLEFAGKRGGKPSPKQRDISLRLVELARAGN 93 (280)
T ss_dssp ECBSSCTTSSBHHHHHHHHHC--SEEEE-CS----CSCTTGGGGSSTTCCEEECSCCC--CCCCHHHHHHHHHHHHHTTC
T ss_pred ecCCCCHHHHHHHHHHHHHhC--CEEEE-cC----CCCHHHHHhccCCCEEEeccccccccccCHHHHHHHHHHHHhCCC
Confidence 445568889999999999997 55554 42 2222211112111111 112356677788888899998
Q ss_pred CccccC---CCCcchHHHHHHHHhhCCC
Q psy15126 80 HIVAPS---DMMDNRIHAIKQSLFTSRQ 104 (300)
Q Consensus 80 d~vAPS---dmMDgrv~air~aLd~~g~ 104 (300)
+++-.+ .+.-|+-..+.+.|.+.|+
T Consensus 94 ~Vv~L~~GDP~i~g~g~~l~~~l~~~gi 121 (280)
T 1s4d_A 94 RVLRLKGGDPFVFGRGGEEALTLVEHQV 121 (280)
T ss_dssp CEEEEESBCTTSSSSHHHHHHHHHTTTC
T ss_pred eEEEEcCCCCccccCHHHHHHHHHHCCC
Confidence 887773 3455778888888888887
No 384
>3ngj_A Deoxyribose-phosphate aldolase; lyase, structural genomics, structural genomics center for infectious disease, ssgcid; 1.70A {Entamoeba histolytica}
Probab=28.30 E-value=3.3e+02 Score=24.47 Aligned_cols=59 Identities=17% Similarity=0.199 Sum_probs=37.9
Q ss_pred hcCCceeeccCcchHHHHHHHHHhhCCCCCEEeEecccccHHHHHHHhCCCCCHHHHHHHHHHHHHHcCCCEE
Q psy15126 212 SQGADFLMVKPALPYLDIISEVKSRHPAYPLFVYQVSGEYAMLAFAAQAGALDLKRALMETLTCLRRGGADVI 284 (300)
Q Consensus 212 ~~GADivmVkPsmm~ld~Ir~~~d~~~~vpi~aY~vSgeY~~~r~Aa~~~~~n~~eal~E~~~~~~r~GAD~I 284 (300)
+-|..-|+|-|+ |+...++.+.. .++.|.+= -|| -.|....+.-+.|+...+ +.|||-|
T Consensus 54 ~~~~~aVcV~p~--~v~~a~~~L~~-s~v~v~tV--igF--------P~G~~~~~~Kv~Ea~~Ai-~~GAdEI 112 (239)
T 3ngj_A 54 EYKFASVCVNPT--WVPLCAELLKG-TGVKVCTV--IGF--------PLGATPSEVKAYETKVAV-EQGAEEV 112 (239)
T ss_dssp HHTCSEEEECGG--GHHHHHHHHTT-SSCEEEEE--EST--------TTCCSCHHHHHHHHHHHH-HTTCSEE
T ss_pred hcCCcEEEECHH--HHHHHHHHhCC-CCCeEEEE--ecc--------CCCCCchHHHHHHHHHHH-HcCCCEE
Confidence 348899999997 66677777754 35665543 333 144445555567777777 5788655
No 385
>3paj_A Nicotinate-nucleotide pyrophosphorylase, carboxyl; TIM barrel, pyridin dicarboxylate, 5-phospho-alpha-D-ribose 1-diphosphate; 2.00A {Vibrio cholerae o1 biovar el tor}
Probab=28.29 E-value=1.4e+02 Score=28.14 Aligned_cols=63 Identities=25% Similarity=0.337 Sum_probs=0.0
Q ss_pred HhHHHHHHHHHhhhcccccCCCCCccccchhhhcCCceeeccCcchHHHHHHHHHhh-CCCCCEEeEecccccHHHHHHH
Q psy15126 180 KTLKRLADISKAFSDAVYVPNHNTDRFQARDVSQGADFLMVKPALPYLDIISEVKSR-HPAYPLFVYQVSGEYAMLAFAA 258 (300)
Q Consensus 180 ~tl~~l~~~a~~~a~~~~~~~~n~~~~~~~Da~~GADivmVkPsmm~ld~Ir~~~d~-~~~vpi~aY~vSgeY~~~r~Aa 258 (300)
.|++.+.+. +++|||+||+-- |-++.+|++... -++++|.+=
T Consensus 239 dtldea~eA----------------------l~aGaD~I~LDn--~~~~~l~~av~~l~~~v~ieaS------------- 281 (320)
T 3paj_A 239 ETLAELEEA----------------------ISAGADIIMLDN--FSLEMMREAVKINAGRAALENS------------- 281 (320)
T ss_dssp SSHHHHHHH----------------------HHTTCSEEEEES--CCHHHHHHHHHHHTTSSEEEEE-------------
T ss_pred CCHHHHHHH----------------------HHcCCCEEEECC--CCHHHHHHHHHHhCCCCeEEEE-------------
Q ss_pred hCCCCCHHHHHHHHHHHHHHcCCCEEEe
Q psy15126 259 QAGALDLKRALMETLTCLRRGGADVIIS 286 (300)
Q Consensus 259 ~~~~~n~~eal~E~~~~~~r~GAD~Ii~ 286 (300)
|-+| .|.+..+.+.|+|+|-+
T Consensus 282 --GGIt-----~~~I~~~a~tGVD~isv 302 (320)
T 3paj_A 282 --GNIT-----LDNLKECAETGVDYISV 302 (320)
T ss_dssp --SSCC-----HHHHHHHHTTTCSEEEC
T ss_pred --CCCC-----HHHHHHHHHcCCCEEEE
No 386
>1sfl_A 3-dehydroquinate dehydratase; 3-dehydroquinase, enzyme turnover, shikimate pathway, lyase; 1.90A {Staphylococcus aureus subsp} SCOP: c.1.10.1 PDB: 1sfj_A*
Probab=28.26 E-value=76 Score=27.85 Aligned_cols=27 Identities=4% Similarity=-0.058 Sum_probs=17.7
Q ss_pred HhHHHHHHHHHHHHHcCCCcccc-CCCC
Q psy15126 62 KTLKRLADISKAFSDAGAHIVAP-SDMM 88 (300)
Q Consensus 62 ~Tl~~l~~~A~~~A~aGad~vAP-SdmM 88 (300)
.|++.+.+++....+.|+|+|-. -|.+
T Consensus 14 ~~~~e~~~~~~~~~~~~~D~vElRvD~l 41 (238)
T 1sfl_A 14 LSIEETLIQKINHRIDAIDVLELRIDQF 41 (238)
T ss_dssp C---CHHHHHHHHTTTTCSEEEEECTTS
T ss_pred CCHHHHHHHHHHhhhcCCCEEEEEeccc
Confidence 56777777888888888888877 4444
No 387
>3khj_A Inosine-5-monophosphate dehydrogenase; enzyme-inhibitor complex, oxidoreductase; HET: IMP C64; 2.80A {Cryptosporidium parvum}
Probab=28.13 E-value=1.4e+02 Score=27.84 Aligned_cols=68 Identities=22% Similarity=0.257 Sum_probs=39.8
Q ss_pred CCCCccccchhhhcCCceeecc--Cc------------chHHHHHHHHHh---hCCCCCEEeEecccccHHHHHHHhCCC
Q psy15126 200 NHNTDRFQARDVSQGADFLMVK--PA------------LPYLDIISEVKS---RHPAYPLFVYQVSGEYAMLAFAAQAGA 262 (300)
Q Consensus 200 ~~n~~~~~~~Da~~GADivmVk--Ps------------mm~ld~Ir~~~d---~~~~vpi~aY~vSgeY~~~r~Aa~~~~ 262 (300)
+-.|......=+++|||+|.|. |+ .+.+..|+++.+ .. ++||++=. |.
T Consensus 152 ~v~t~e~A~~l~~aGaD~I~VG~~~Gs~~~tr~~~g~g~p~~~~i~~v~~~~~~~-~iPVIA~G--------------GI 216 (361)
T 3khj_A 152 NVVTEEATKELIENGADGIKVGIGPGSICTTRIVAGVGVPQITAIEKCSSVASKF-GIPIIADG--------------GI 216 (361)
T ss_dssp EECSHHHHHHHHHTTCSEEEECSSCCTTCCHHHHTCBCCCHHHHHHHHHHHHHHH-TCCEEEES--------------CC
T ss_pred cCCCHHHHHHHHHcCcCEEEEecCCCcCCCcccccCCCCCcHHHHHHHHHHHhhc-CCeEEEEC--------------CC
Confidence 3344444444568999999883 22 235666666643 33 68988641 33
Q ss_pred CCHHHHHHHHHHHHHHcCCCEEEec
Q psy15126 263 LDLKRALMETLTCLRRGGADVIISY 287 (300)
Q Consensus 263 ~n~~eal~E~~~~~~r~GAD~Ii~y 287 (300)
.+.++ +...+ ++|||.||+-
T Consensus 217 ~~~~d----i~kal-a~GAd~V~vG 236 (361)
T 3khj_A 217 RYSGD----IGKAL-AVGASSVMIG 236 (361)
T ss_dssp CSHHH----HHHHH-HHTCSEEEES
T ss_pred CCHHH----HHHHH-HcCCCEEEEC
Confidence 34433 22334 5799999864
No 388
>3uhf_A Glutamate racemase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta sandwich fold, isomerase; HET: DGL; 1.83A {Campylobacter jejuni} PDB: 3uho_A* 3uhp_A
Probab=28.04 E-value=1.1e+02 Score=27.57 Aligned_cols=54 Identities=17% Similarity=0.223 Sum_probs=33.0
Q ss_pred ceEEEEeecccCCCCCCccccccCCCcccchHhHHHHHHHHHhhhcccccCCCCCccccchhhhcCCceeeccCcch--H
Q psy15126 149 GLAIRAAVCLCGYTSHGHCAIFNEDGSIHYEKTLKRLADISKAFSDAVYVPNHNTDRFQARDVSQGADFLMVKPALP--Y 226 (300)
Q Consensus 149 ~~ai~~dvclc~yt~hGHcgi~~~~g~i~nd~tl~~l~~~a~~~a~~~~~~~~n~~~~~~~Da~~GADivmVkPsmm--~ 226 (300)
++.-..|...+|| |.=..|+-.+++.+.+..+ .++|||+|+|+=..+ +
T Consensus 51 ~~iy~~D~a~~PY------------G~ks~e~i~~~~~~~~~~L------------------~~~g~d~IVIACNTa~~~ 100 (274)
T 3uhf_A 51 EIIYYGDTARVPY------------GVKDKDTIIKFCLEALDFF------------------EQFQIDMLIIACNTASAY 100 (274)
T ss_dssp EEEEEECTTTCCC------------TTSCHHHHHHHHHHHHHHH------------------TTSCCSEEEECCHHHHHH
T ss_pred CEEEEecCCCCCC------------CCCCHHHHHHHHHHHHHHH------------------HHCCCCEEEEeCCChhHH
Confidence 4445567777788 4334455555555555443 578999998876533 2
Q ss_pred -HHHHHH
Q psy15126 227 -LDIISE 232 (300)
Q Consensus 227 -ld~Ir~ 232 (300)
++.+|+
T Consensus 101 al~~lr~ 107 (274)
T 3uhf_A 101 ALDALRA 107 (274)
T ss_dssp SHHHHHH
T ss_pred HHHHHHH
Confidence 566555
No 389
>2zbt_A Pyridoxal biosynthesis lyase PDXS; pyridoxine biosynthesis, structural genomics, NPPSFA; 1.65A {Thermus thermophilus} PDB: 2iss_A*
Probab=27.99 E-value=68 Score=28.31 Aligned_cols=16 Identities=25% Similarity=0.243 Sum_probs=13.3
Q ss_pred HHHHHHHHHcCCCccc
Q psy15126 68 ADISKAFSDAGAHIVA 83 (300)
Q Consensus 68 ~~~A~~~A~aGad~vA 83 (300)
.+++..+.++|++.|-
T Consensus 31 ~~~a~~~~~~Ga~~i~ 46 (297)
T 2zbt_A 31 PEQAVIAEEAGAVAVM 46 (297)
T ss_dssp HHHHHHHHHHTCSEEE
T ss_pred HHHHHHHHHCCCcEEE
Confidence 5788888899999983
No 390
>2htm_A Thiazole biosynthesis protein THIG; thiamin biosynthesis, THIG, thermus thermophilus HB8, structural genomics, NPPSFA; 2.30A {Thermus thermophilus}
Probab=27.78 E-value=2.1e+02 Score=26.49 Aligned_cols=92 Identities=17% Similarity=0.121 Sum_probs=49.2
Q ss_pred cccchHhHHHHHHHHHhhhccc-ccCCCCCc-cccchhhhcCCceeeccCcc-------hHHHHHHHHHhhCCC-CCEEe
Q psy15126 175 SIHYEKTLKRLADISKAFSDAV-YVPNHNTD-RFQARDVSQGADFLMVKPAL-------PYLDIISEVKSRHPA-YPLFV 244 (300)
Q Consensus 175 ~i~nd~tl~~l~~~a~~~a~~~-~~~~~n~~-~~~~~Da~~GADivmVkPsm-------m~ld~Ir~~~d~~~~-vpi~a 244 (300)
..++.+|+++.-+....==.++ |+ +-| .+-.+=.+.|+++||.-|+. .-...|+.+++..++ +||++
T Consensus 107 ~pD~~~tv~aa~~L~k~Gf~Vlpy~---~~D~~~ak~l~~~G~~aVmPlg~pIGsG~Gi~~~~~L~~i~~~~~~~vPVI~ 183 (268)
T 2htm_A 107 LPDPLETLKAAERLIEEDFLVLPYM---GPDLVLAKRLAALGTATVMPLAAPIGSGWGVRTRALLELFAREKASLPPVVV 183 (268)
T ss_dssp CCCHHHHHHHHHHHHHTTCEECCEE---CSCHHHHHHHHHHTCSCBEEBSSSTTTCCCSTTHHHHHHHHHTTTTSSCBEE
T ss_pred CcCHHHHHHHHHHHHHCCCEEeecc---CCCHHHHHHHHhcCCCEEEecCccCcCCcccCCHHHHHHHHHhcCCCCeEEE
Confidence 3466777776544422211111 22 212 22233346899999875541 134447777774467 99886
Q ss_pred EecccccHHHHHHHhCCCCCHHHHHHHHHHHHHHcCCCEEEecc
Q psy15126 245 YQVSGEYAMLAFAAQAGALDLKRALMETLTCLRRGGADVIISYY 288 (300)
Q Consensus 245 Y~vSgeY~~~r~Aa~~~~~n~~eal~E~~~~~~r~GAD~Ii~y~ 288 (300)
..|..+..++ ...+ +.|||-|++--
T Consensus 184 --------------~GGI~tpsDA----a~Am-eLGAdgVlVgS 208 (268)
T 2htm_A 184 --------------DAGLGLPSHA----AEVM-ELGLDAVLVNT 208 (268)
T ss_dssp --------------ESCCCSHHHH----HHHH-HTTCCEEEESH
T ss_pred --------------eCCCCCHHHH----HHHH-HcCCCEEEECh
Confidence 2344444332 2344 56888777654
No 391
>2b7n_A Probable nicotinate-nucleotide pyrophosphorylase; quinolinate phosphoribosyltransferase, quinolinic acid, HELI pylori, transferase; HET: NTM; 2.30A {Helicobacter pylori} PDB: 2b7p_A* 2b7q_A*
Probab=27.77 E-value=93 Score=27.95 Aligned_cols=65 Identities=20% Similarity=0.163 Sum_probs=42.5
Q ss_pred HHHHHHHHHHhCCC-cEEEeeecCCCCCCCCcceeeCCCCceecHHhHHHHHHHHHHHHHcCCCccccCCCCcchHHHHH
Q psy15126 18 LFQVIPMIRKQFPS-LTIACDVCLCGYTSHGHCAIFNEDGSIHYEKTLKRLADISKAFSDAGAHIVAPSDMMDNRIHAIK 96 (300)
Q Consensus 18 ~~~~i~~ik~~~p~-l~i~~Dvclc~yt~hGHcgi~~~~g~i~nd~Tl~~l~~~A~~~A~aGad~vAPSdmMDgrv~air 96 (300)
+.++++.+|+.+|+ +.|+.-| + |+ +++.+..++|+|+|-...|-...+..++
T Consensus 168 ~~~ai~~~r~~~~~~~~i~vev--------------------~---tl----ee~~~A~~aGaD~I~ld~~~~~~l~~~v 220 (273)
T 2b7n_A 168 LKSFLTHARKNLPFTAKIEIEC--------------------E---SF----EEAKNAMNAGADIVMCDNLSVLETKEIA 220 (273)
T ss_dssp HHHHHHHHGGGSCTTCCEEEEE--------------------S---SH----HHHHHHHHHTCSEEEEETCCHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCceEEEEc--------------------C---CH----HHHHHHHHcCCCEEEECCCCHHHHHHHH
Confidence 67899999999875 2333211 1 12 3344455789999998777777777777
Q ss_pred HHHhhCCCCCCcccc
Q psy15126 97 QSLFTSRQSSTTGLL 111 (300)
Q Consensus 97 ~aLd~~g~~~~v~Im 111 (300)
+.++. ++ .++.|.
T Consensus 221 ~~l~~-~~-~~~~i~ 233 (273)
T 2b7n_A 221 AYRDA-HY-PFVLLE 233 (273)
T ss_dssp HHHHH-HC-TTCEEE
T ss_pred HHhhc-cC-CCcEEE
Confidence 77765 55 455554
No 392
>3oa3_A Aldolase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, pathogenic fungus; 1.60A {Coccidioides immitis}
Probab=27.50 E-value=2.6e+02 Score=25.87 Aligned_cols=59 Identities=15% Similarity=0.238 Sum_probs=38.0
Q ss_pred hcCCceeeccCcchHHHHHHHHHhhCCCCCEEeEecccccHHHHHHHhCCCCCHHHHHHHHHHHHHHcCCCEE
Q psy15126 212 SQGADFLMVKPALPYLDIISEVKSRHPAYPLFVYQVSGEYAMLAFAAQAGALDLKRALMETLTCLRRGGADVI 284 (300)
Q Consensus 212 ~~GADivmVkPsmm~ld~Ir~~~d~~~~vpi~aY~vSgeY~~~r~Aa~~~~~n~~eal~E~~~~~~r~GAD~I 284 (300)
+-|+.-|.|-|+ ++...++.+.. .+++|.+= -|| -.|....+.-+.|+...+ +.|||-|
T Consensus 85 ~~g~aaVCV~P~--~V~~a~~~L~~-s~V~V~tV--igF--------P~G~~~~~~Kv~Ea~~Ai-~~GAdEI 143 (288)
T 3oa3_A 85 EYGFATVCVRPD--YVSRAVQYLQG-TQVGVTCV--IGF--------HEGTYSTDQKVSEAKRAM-QNGASEL 143 (288)
T ss_dssp HHTCSEEEECGG--GHHHHHHHTTT-SSCEEEEE--EST--------TTSCSCHHHHHHHHHHHH-HTTCSEE
T ss_pred hcCCcEEEECHH--HHHHHHHHcCC-CCCeEEEE--eCC--------CCCCCcHHHHHHHHHHHH-HcCCCEE
Confidence 348899999988 67777777754 35666543 333 113344455567777777 5788765
No 393
>3luf_A Two-component system response regulator/ggdef domain protein; structural genomics, ASA_2441, PSI-2, protein structure initiative; HET: MSE; 1.76A {Aeromonas salmonicida} PDB: 3mf4_A*
Probab=27.38 E-value=2.8e+02 Score=23.42 Aligned_cols=56 Identities=14% Similarity=0.198 Sum_probs=35.8
Q ss_pred CceeeccCcc---hHHHHHHHHHhhC--CCCCEEeEecccccHHHHHHHhCCCCCHHHHHHHHHHHHHHcCCCEEEecch
Q psy15126 215 ADFLMVKPAL---PYLDIISEVKSRH--PAYPLFVYQVSGEYAMLAFAAQAGALDLKRALMETLTCLRRGGADVIISYYT 289 (300)
Q Consensus 215 ADivmVkPsm---m~ld~Ir~~~d~~--~~vpi~aY~vSgeY~~~r~Aa~~~~~n~~eal~E~~~~~~r~GAD~Ii~y~A 289 (300)
.|+|++--.| -=++.+|++++.+ +++||+..+.+........ .+ +.||+-.++||-
T Consensus 170 ~dlvllD~~mP~~dG~~l~~~lr~~~~~~~~~ii~~s~~~~~~~~~~------------------a~-~~Ga~~yl~KP~ 230 (259)
T 3luf_A 170 IRLVLVDYYMPEIDGISLVRMLRERYSKQQLAIIGISVSDKRGLSAR------------------YL-KQGANDFLNQPF 230 (259)
T ss_dssp EEEEEECSCCSSSCHHHHHHHHHHHCCTTTSEEEEEECSSSSSHHHH------------------HH-HTTCSEEEESSC
T ss_pred CCEEEEcCCCCCCCHHHHHHHHHhccCCCCCeEEEEEccCCHHHHHH------------------HH-hcChhheEcCCC
Confidence 4777665444 3688888888774 4689998876544433322 23 567777777773
No 394
>3cwo_X Beta/alpha-barrel protein based on 1THF and 1TMY; XRAY, CHEY, HISF, half barrel, de novo protein; 3.10A {Thermotoga maritima} PDB: 2lle_A
Probab=27.27 E-value=1.9e+02 Score=22.95 Aligned_cols=56 Identities=18% Similarity=0.232 Sum_probs=32.6
Q ss_pred hcCCceeecc---CcchHHHHHHHHHhhCCC--CCEEeEecccccHHHHHHHhCCCCCHHHHHHHHHHHHHHcCCCEEEe
Q psy15126 212 SQGADFLMVK---PALPYLDIISEVKSRHPA--YPLFVYQVSGEYAMLAFAAQAGALDLKRALMETLTCLRRGGADVIIS 286 (300)
Q Consensus 212 ~~GADivmVk---Psmm~ld~Ir~~~d~~~~--vpi~aY~vSgeY~~~r~Aa~~~~~n~~eal~E~~~~~~r~GAD~Ii~ 286 (300)
+.+.|++++- |.+.-++.++++++..+. +|++.. ++. .|......+.||+-.++
T Consensus 23 ~~~~dlvl~D~~~p~~~g~~~~~~l~~~~~~~~i~vi~~--~~~-------------------~~~~~~~~~~Ga~~~l~ 81 (237)
T 3cwo_X 23 ELKPDIVTMDITMPEMNGIDAIKEIMKIDPNAKIIVCSA--MGQ-------------------QAMVIEAIKAGAKDFIV 81 (237)
T ss_dssp HHCCSCEEEECCSTTSSHHHHHHHHHHHSSSCCEEEECC--SST-------------------HHHHHHHHHTTCCEEEE
T ss_pred hcCCCEEEEeCCCCCCCHHHHHHHHHHhCCCCCEEEEEC--CCC-------------------HHHHHHHHHCCHHheEe
Confidence 3456776654 444467888888766444 555544 222 12222333678888888
Q ss_pred cc
Q psy15126 287 YY 288 (300)
Q Consensus 287 y~ 288 (300)
||
T Consensus 82 kp 83 (237)
T 3cwo_X 82 NT 83 (237)
T ss_dssp SH
T ss_pred CC
Confidence 87
No 395
>3c3m_A Response regulator receiver protein; structural genomics, unknown function, PSI-2, protein struct initiative; HET: MSE; 1.70A {Methanoculleus marisnigri JR1}
Probab=27.18 E-value=1.7e+02 Score=21.27 Aligned_cols=36 Identities=8% Similarity=0.285 Sum_probs=25.8
Q ss_pred cCCceeeccCcch---HHHHHHHHHhh--CCCCCEEeEecc
Q psy15126 213 QGADFLMVKPALP---YLDIISEVKSR--HPAYPLFVYQVS 248 (300)
Q Consensus 213 ~GADivmVkPsmm---~ld~Ir~~~d~--~~~vpi~aY~vS 248 (300)
.-.|+|++--.|+ -++.++++++. .+++||+..+..
T Consensus 46 ~~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~~~ii~ls~~ 86 (138)
T 3c3m_A 46 TPPDLVLLDIMMEPMDGWETLERIKTDPATRDIPVLMLTAK 86 (138)
T ss_dssp SCCSEEEEESCCSSSCHHHHHHHHHHSTTTTTSCEEEEESS
T ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHcCcccCCCCEEEEECC
Confidence 4468888765443 57888888765 468999998653
No 396
>1rcu_A Conserved hypothetical protein VT76; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.50A {Thermotoga maritima} SCOP: c.129.1.1
Probab=27.17 E-value=77 Score=27.50 Aligned_cols=41 Identities=12% Similarity=0.044 Sum_probs=33.5
Q ss_pred hcCCceeeccCcch-HHHHHHHHHhhCCCCCEEeEecccccHHH
Q psy15126 212 SQGADFLMVKPALP-YLDIISEVKSRHPAYPLFVYQVSGEYAML 254 (300)
Q Consensus 212 ~~GADivmVkPsmm-~ld~Ir~~~d~~~~vpi~aY~vSgeY~~~ 254 (300)
-+=+|.++|-|+-. .|+-+.+++. + +.||+.+..+|+|.++
T Consensus 116 ~~~sda~IvlpGG~GTL~E~~eal~-~-~kPV~lln~~g~w~~~ 157 (195)
T 1rcu_A 116 LRNADVVVSIGGEIGTAIEILGAYA-L-GKPVILLRGTGGWTDR 157 (195)
T ss_dssp HTTCSEEEEESCCHHHHHHHHHHHH-T-TCCEEEETTSCHHHHH
T ss_pred HHhCCEEEEecCCCcHHHHHHHHHh-c-CCCEEEECCCCccHHH
Confidence 34478888899855 8888888888 3 6999999999999864
No 397
>3l5l_A Xenobiotic reductase A; TIM barrel, oxidoreductase; HET: BU3 FMN; 1.03A {Pseudomonas putida} SCOP: c.1.4.0 PDB: 3l5m_A* 3n19_B* 3n16_A* 3l68_A* 3l67_A* 3l65_A* 3l66_A* 3n14_A* 2h8z_A* 2h90_A* 2h8x_A*
Probab=27.07 E-value=38 Score=31.45 Aligned_cols=57 Identities=19% Similarity=0.437 Sum_probs=42.7
Q ss_pred hHHHHHHHHHHhCC-CcEEEeeecCCCCCCCCcceeeCCCCceecHHhHHHHHHHHHHHHHcCCCccccCC
Q psy15126 17 PLFQVIPMIRKQFP-SLTIACDVCLCGYTSHGHCAIFNEDGSIHYEKTLKRLADISKAFSDAGAHIVAPSD 86 (300)
Q Consensus 17 ~~~~~i~~ik~~~p-~l~i~~Dvclc~yt~hGHcgi~~~~g~i~nd~Tl~~l~~~A~~~A~aGad~vAPSd 86 (300)
.+.+.|+++|++.| +..|..-+....|.. .| +.|++...+.+..+.++|+|.|-.|.
T Consensus 210 ~~~eiv~aVr~avg~d~pV~vRis~~~~~~---------~G----~~~~~~~~~la~~L~~~Gvd~i~vs~ 267 (363)
T 3l5l_A 210 FLLETLAAVREVWPENLPLTARFGVLEYDG---------RD----EQTLEESIELARRFKAGGLDLLSVSV 267 (363)
T ss_dssp HHHHHHHHHHTTSCTTSCEEEEEEEECSSS---------CH----HHHHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred HHHHHHHHHHHHcCCCceEEEEecchhcCC---------CC----CCCHHHHHHHHHHHHHcCCCEEEEec
Confidence 56778999999986 677777766554421 12 25778888899999999999998764
No 398
>3s1x_A Probable transaldolase; alpha-beta barrel, conformational selection, domain swapping transferase; HET: I22; 1.65A {Thermoplasma acidophilum} PDB: 3s1u_A* 3s1v_A* 3s0c_A* 3s1w_A*
Probab=27.05 E-value=1.6e+02 Score=26.29 Aligned_cols=56 Identities=18% Similarity=0.329 Sum_probs=34.2
Q ss_pred hhcCCceeeccCc-----------chHHHHHHHHHhhC-CCCCEEeEecccccHHHHHHHhCCCCCHHHHHHHHHHHHHH
Q psy15126 211 VSQGADFLMVKPA-----------LPYLDIISEVKSRH-PAYPLFVYQVSGEYAMLAFAAQAGALDLKRALMETLTCLRR 278 (300)
Q Consensus 211 a~~GADivmVkPs-----------mm~ld~Ir~~~d~~-~~vpi~aY~vSgeY~~~r~Aa~~~~~n~~eal~E~~~~~~r 278 (300)
+++||+.| .|= +..+.-|++..+.| .++-|++=|+ .|. .|.+... .
T Consensus 122 a~AGa~yI--SPfvgRi~d~g~dG~~~v~~i~~~~~~~~~~T~IlaAS~---------------Rn~----~~v~~aa-~ 179 (223)
T 3s1x_A 122 AKAGVTYV--SPFVGRLDDIGEDGMQIIDMIRTIFNNYIIKTQILVASI---------------RNP----IHVLRSA-V 179 (223)
T ss_dssp HHTTCSEE--EEBSHHHHHTTSCTHHHHHHHHHHHHHTTCCSEEEEBSC---------------CSH----HHHHHHH-H
T ss_pred HHcCCeEE--EeecchHhhcCCCHHHHHHHHHHHHHHcCCCCEEEEEeC---------------CCH----HHHHHHH-H
Confidence 68999998 872 22344555555553 3566666432 455 4455555 5
Q ss_pred cCCCEEEecc
Q psy15126 279 GGADVIISYY 288 (300)
Q Consensus 279 ~GAD~Ii~y~ 288 (300)
+|||++-+-|
T Consensus 180 ~G~d~~Tip~ 189 (223)
T 3s1x_A 180 IGADVVTVPF 189 (223)
T ss_dssp HTCSEEEECH
T ss_pred cCCCEEEeCH
Confidence 8999976655
No 399
>2f6u_A GGGPS, (S)-3-O-geranylgeranylglyceryl phosphate synthase; non-canonical TIM-barrel, prenyltransferase, archaeal lipid synthesis, dimer; HET: CIT; 1.55A {Archaeoglobus fulgidus} SCOP: c.1.4.1 PDB: 2f6x_A*
Probab=26.66 E-value=52 Score=29.35 Aligned_cols=34 Identities=18% Similarity=0.222 Sum_probs=24.7
Q ss_pred hhcCCceeeccCc-ch----HHHHHHHHHhhCCCCCE--EeEe
Q psy15126 211 VSQGADFLMVKPA-LP----YLDIISEVKSRHPAYPL--FVYQ 246 (300)
Q Consensus 211 a~~GADivmVkPs-mm----~ld~Ir~~~d~~~~vpi--~aY~ 246 (300)
.++|||+|+|.=| -+ .++.++++++ +++|| |.|.
T Consensus 30 ~~~GaD~IelG~S~g~t~~~~~~~v~~ir~--~~~Pivl~~y~ 70 (234)
T 2f6u_A 30 ADSGTDAVMISGTQNVTYEKARTLIEKVSQ--YGLPIVVEPSD 70 (234)
T ss_dssp HTTTCSEEEECCCTTCCHHHHHHHHHHHTT--SCCCEEECCSS
T ss_pred HHcCCCEEEECCCCCCCHHHHHHHHHHhcC--CCCCEEEecCC
Confidence 6899999999877 22 5677777776 37884 5554
No 400
>1vpx_A Protein (transaldolase (EC 2.2.1.2)); TM0295, structural genomics, JOI for structural genomics, JCSG; HET: GOL; 2.40A {Thermotoga maritima} SCOP: c.1.10.1
Probab=26.66 E-value=42 Score=30.11 Aligned_cols=92 Identities=17% Similarity=0.099 Sum_probs=50.2
Q ss_pred CCCCCChHHHHHHHHHHhCCCcEEEeeecCCCCCCCCcceee--CCCCceecHHhHHHHHHHHHHHHHcCCCcccc----
Q psy15126 11 ADTPDNPLFQVIPMIRKQFPSLTIACDVCLCGYTSHGHCAIF--NEDGSIHYEKTLKRLADISKAFSDAGAHIVAP---- 84 (300)
Q Consensus 11 a~~~~~~~~~~i~~ik~~~p~l~i~~Dvclc~yt~hGHcgi~--~~~g~i~nd~Tl~~l~~~A~~~A~aGad~vAP---- 84 (300)
+.+.++.+.+|.+. .+.+|+++|=- |-|-.|--.+- ...| |.=-.|+=-=..||+..|++|+.+|+|
T Consensus 72 a~d~e~mi~eA~~L-~~~~~nv~IKI-----P~T~eGl~Ai~~L~~eG-I~vNvTliFS~~QA~laa~AGa~~iSpFVgR 144 (230)
T 1vpx_A 72 SLDYEGMVREAREL-AQISEYVVIKI-----PMTPDGIKAVKTLSAEG-IKTNVTLVFSPAQAILAAKAGATYVSPFVGR 144 (230)
T ss_dssp CCSHHHHHHHHHHH-HTTCTTEEEEE-----ESSHHHHHHHHHHHHTT-CCEEEEEECSHHHHHHHHHHTCSEEEEBHHH
T ss_pred cCCHHHHHHHHHHH-HHhCCCEEEEe-----CCCHHHHHHHHHHHHCC-CCEEEEEeCCHHHHHHHHhCCCeEEEeccch
Confidence 44555666666554 34457755422 44544433221 1223 111112222234799999999999999
Q ss_pred --CCCCcc--hHHHHHHHHhhCCCCCCcccc
Q psy15126 85 --SDMMDN--RIHAIKQSLFTSRQSSTTGLL 111 (300)
Q Consensus 85 --SdmMDg--rv~air~aLd~~g~~~~v~Im 111 (300)
....|| -|..+++.++..|+ ++-||
T Consensus 145 idd~g~dG~~~v~~i~~~~~~~~~--~t~iL 173 (230)
T 1vpx_A 145 MDDLSNDGMRMLGEIVEIYNNYGF--ETEII 173 (230)
T ss_dssp HHHTTSCHHHHHHHHHHHHHHHTC--SCEEE
T ss_pred hhhccccHHHHHHHHHHHHHHcCC--CeEEE
Confidence 222233 36777888888887 34565
No 401
>3lmz_A Putative sugar isomerase; structural genomics, joint center structural genomics, JCSG, protein structure initiative, PS isomerase; HET: MSE CIT PGE; 1.44A {Parabacteroides distasonis}
Probab=26.64 E-value=1.7e+02 Score=24.33 Aligned_cols=71 Identities=10% Similarity=0.100 Sum_probs=44.8
Q ss_pred hhcCCceeeccCc-------chHHHHHHHHHhhCCCCCEEeEecccccHHHHHHHhCCCCCHHHHHHHHHHHHHHcCCCE
Q psy15126 211 VSQGADFLMVKPA-------LPYLDIISEVKSRHPAYPLFVYQVSGEYAMLAFAAQAGALDLKRALMETLTCLRRGGADV 283 (300)
Q Consensus 211 a~~GADivmVkPs-------mm~ld~Ir~~~d~~~~vpi~aY~vSgeY~~~r~Aa~~~~~n~~eal~E~~~~~~r~GAD~ 283 (300)
.+.|.|-|=+.+. ...+..+|+.++++ ++.+.+.+.... ...+.+.+.+.-.++-||..
T Consensus 40 ~~~G~~~vEl~~~~~~~~~~~~~~~~~~~~l~~~-gl~i~~~~~~~~-------------~~~~~~~~~i~~A~~lGa~~ 105 (257)
T 3lmz_A 40 ERLDIHYLCIKDFHLPLNSTDEQIRAFHDKCAAH-KVTGYAVGPIYM-------------KSEEEIDRAFDYAKRVGVKL 105 (257)
T ss_dssp HHTTCCEEEECTTTSCTTCCHHHHHHHHHHHHHT-TCEEEEEEEEEE-------------CSHHHHHHHHHHHHHHTCSE
T ss_pred HHhCCCEEEEecccCCCCCCHHHHHHHHHHHHHc-CCeEEEEecccc-------------CCHHHHHHHHHHHHHhCCCE
Confidence 3556665533321 22678899998886 788887765322 22345566666666779999
Q ss_pred EEecchHHHHHH
Q psy15126 284 IISYYTPRVLEW 295 (300)
Q Consensus 284 Ii~y~A~~~ld~ 295 (300)
|.+.|..+.++.
T Consensus 106 v~~~p~~~~l~~ 117 (257)
T 3lmz_A 106 IVGVPNYELLPY 117 (257)
T ss_dssp EEEEECGGGHHH
T ss_pred EEecCCHHHHHH
Confidence 998876544443
No 402
>3usb_A Inosine-5'-monophosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel, CBS-domain; HET: MSE IMP; 2.38A {Bacillus anthracis} PDB: 3tsd_A* 3tsb_A*
Probab=26.63 E-value=1.9e+02 Score=28.14 Aligned_cols=60 Identities=20% Similarity=0.306 Sum_probs=35.8
Q ss_pred hhhhcCCceeeccC--------------cchHHHHHHHH---HhhCCCCCEEeEecccccHHHHHHHhCCCCCHHHHHHH
Q psy15126 209 RDVSQGADFLMVKP--------------ALPYLDIISEV---KSRHPAYPLFVYQVSGEYAMLAFAAQAGALDLKRALME 271 (300)
Q Consensus 209 ~Da~~GADivmVkP--------------smm~ld~Ir~~---~d~~~~vpi~aY~vSgeY~~~r~Aa~~~~~n~~eal~E 271 (300)
.=+++|||.|.|.. +.+.+..+.++ .+.+ ++||++= =|..+..+
T Consensus 313 ~~~~aGad~i~vg~g~gsi~~~~~~~g~g~p~~~~l~~v~~~~~~~-~iPVIa~--------------GGI~~~~d---- 373 (511)
T 3usb_A 313 ALIEAGANVVKVGIGPGSICTTRVVAGVGVPQLTAVYDCATEARKH-GIPVIAD--------------GGIKYSGD---- 373 (511)
T ss_dssp HHHHHTCSEEEECSSCSTTCCHHHHHCCCCCHHHHHHHHHHHHHTT-TCCEEEE--------------SCCCSHHH----
T ss_pred HHHHhCCCEEEECCCCccccccccccCCCCCcHHHHHHHHHHHHhC-CCcEEEe--------------CCCCCHHH----
Confidence 33679999997621 12345555554 3444 6898863 13445533
Q ss_pred HHHHHHHcCCCEEEecc
Q psy15126 272 TLTCLRRGGADVIISYY 288 (300)
Q Consensus 272 ~~~~~~r~GAD~Ii~y~ 288 (300)
..+.+ ..|||.+|+--
T Consensus 374 i~kal-a~GA~~V~vGs 389 (511)
T 3usb_A 374 MVKAL-AAGAHVVMLGS 389 (511)
T ss_dssp HHHHH-HTTCSEEEEST
T ss_pred HHHHH-HhCchhheecH
Confidence 33345 58999999743
No 403
>3sbx_A Putative uncharacterized protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: AMP; 2.50A {Mycobacterium marinum M}
Probab=26.57 E-value=1.7e+02 Score=25.15 Aligned_cols=53 Identities=19% Similarity=0.186 Sum_probs=40.4
Q ss_pred CCceeeccCcch-HHHHHHHHHhh----CCCCCEEeEecccccHHHHH----HHhCCCCCHH
Q psy15126 214 GADFLMVKPALP-YLDIISEVKSR----HPAYPLFVYQVSGEYAMLAF----AAQAGALDLK 266 (300)
Q Consensus 214 GADivmVkPsmm-~ld~Ir~~~d~----~~~vpi~aY~vSgeY~~~r~----Aa~~~~~n~~ 266 (300)
=+|.+++=|+-. .|+-+-+++.- ..+.||.-|++.|+|.++.. ..+.|.++.+
T Consensus 108 ~sda~IalPGG~GTLdElfe~lt~~qlg~~~kPvvlln~~gfw~~l~~~l~~~~~~Gfi~~~ 169 (189)
T 3sbx_A 108 RANAFITLPGGVGTLDELLDVWTEGYLGMHDKSIVVLDPWGHFDGLRAWLSELADTGYVSRT 169 (189)
T ss_dssp HCSEEEECSCCHHHHHHHHHHHHHHHTTSCCCCEEEECTTCTTHHHHHHHHHHHHTTSSCHH
T ss_pred HCCEEEEeCCCcchHHHHHHHHHHHHhcccCCCEEEecCCccchHHHHHHHHHHHCCCCCHH
Confidence 378888999965 88888888741 23689999999999998864 4456777664
No 404
>1s8n_A Putative antiterminator; RV1626, structural genomics, transcriptional antiterminator, component system, PSI; 1.48A {Mycobacterium tuberculosis} SCOP: c.23.1.1 PDB: 1sd5_A
Probab=26.41 E-value=2.3e+02 Score=22.33 Aligned_cols=37 Identities=22% Similarity=0.382 Sum_probs=26.5
Q ss_pred hcCCceeeccCcch---HHHHHHHHHhhCCCCCEEeEeccc
Q psy15126 212 SQGADFLMVKPALP---YLDIISEVKSRHPAYPLFVYQVSG 249 (300)
Q Consensus 212 ~~GADivmVkPsmm---~ld~Ir~~~d~~~~vpi~aY~vSg 249 (300)
+...|+|++--.|+ -++.+++++...+ .||+..+...
T Consensus 56 ~~~~dlvi~D~~~p~~~g~~~~~~l~~~~~-~pii~lt~~~ 95 (205)
T 1s8n_A 56 LHKPDLVIMDVKMPRRDGIDAASEIASKRI-APIVVLTAFS 95 (205)
T ss_dssp HHCCSEEEEESSCSSSCHHHHHHHHHHTTC-SCEEEEEEGG
T ss_pred hcCCCEEEEeCCCCCCChHHHHHHHHhcCC-CCEEEEecCC
Confidence 44578888775543 6888999888764 5999886533
No 405
>2eq5_A 228AA long hypothetical hydantoin racemase; structural genomics, NPPSFA, national project on P structural and functional analyses; 2.20A {Pyrococcus horikoshii}
Probab=26.36 E-value=1.9e+02 Score=24.08 Aligned_cols=70 Identities=17% Similarity=0.282 Sum_probs=42.5
Q ss_pred HHHHHHhCCCcEEEeeecCCCCCCCCcceeeCCCCceecHHhHHHHHHHHHHHHHcCCCccccCCCCcchHHHHHHHH
Q psy15126 22 IPMIRKQFPSLTIACDVCLCGYTSHGHCAIFNEDGSIHYEKTLKRLADISKAFSDAGAHIVAPSDMMDNRIHAIKQSL 99 (300)
Q Consensus 22 i~~ik~~~p~l~i~~Dvclc~yt~hGHcgi~~~~g~i~nd~Tl~~l~~~A~~~A~aGad~vAPSdmMDgrv~air~aL 99 (300)
.+.|++..|++.+.. .. .||.. ..+ ++..+.......+.+.+..+.+.|+|.|....--+--...+|+.+
T Consensus 27 ~~~~~~~~p~~~i~~-~~-~p~g~---~~~---~~~~~~~~~~~~l~~~~~~l~~~g~d~iviaCnta~~~~~l~~~~ 96 (228)
T 2eq5_A 27 GRIIESAFPELKVVS-RC-IEDQP---KGI---YNEETEREAEPKIIRLAKEFEREGVDAIIISCAADPAVEKVRKLL 96 (228)
T ss_dssp HHHHHHHCTTEEEEE-EE-CSSCT---TCC---SSHHHHHHHHHHHHHHHHHHHHTTCSEEEECSTTCTTHHHHHHHC
T ss_pred HHHHHhhCCCCeEEE-Ee-CCCCc---hhc---cccccHHHhHHHHHHHHHHHHHCCCCEEEEeCCchHHHHHHHHhC
Confidence 567888999988877 33 36532 111 122233345567888888888999999988333223344555443
No 406
>2b4a_A BH3024; flavodoxin-like fold, structural genomics, joint center for structural genomics, JCSG, protein structure initiative; 2.42A {Bacillus halodurans} SCOP: c.23.1.1
Probab=26.25 E-value=94 Score=22.61 Aligned_cols=34 Identities=18% Similarity=0.337 Sum_probs=26.7
Q ss_pred cCCceeeccCcch---HHHHHHHHHhhCCCCCEEeEe
Q psy15126 213 QGADFLMVKPALP---YLDIISEVKSRHPAYPLFVYQ 246 (300)
Q Consensus 213 ~GADivmVkPsmm---~ld~Ir~~~d~~~~vpi~aY~ 246 (300)
.-.|+|++--.|+ -++.++++++.++++||+..+
T Consensus 59 ~~~dlvilD~~l~~~~g~~~~~~l~~~~~~~~ii~ls 95 (138)
T 2b4a_A 59 STCDLLIVSDQLVDLSIFSLLDIVKEQTKQPSVLILT 95 (138)
T ss_dssp GSCSEEEEETTCTTSCHHHHHHHHTTSSSCCEEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhhCCCCCEEEEE
Confidence 4579998875543 678889888888899999986
No 407
>3ewb_X 2-isopropylmalate synthase; LEUA, structural genomics, unknown function, amino-acid biosynthesis; 2.10A {Listeria monocytogenes str}
Probab=25.91 E-value=2.3e+02 Score=25.52 Aligned_cols=71 Identities=13% Similarity=0.307 Sum_probs=0.0
Q ss_pred hHHHHHHHHHhhhcccccCCCCCccccchhhhcCCceeeccCc--ch----HHHHHHHHHhhCCCCC--EEeEecccccH
Q psy15126 181 TLKRLADISKAFSDAVYVPNHNTDRFQARDVSQGADFLMVKPA--LP----YLDIISEVKSRHPAYP--LFVYQVSGEYA 252 (300)
Q Consensus 181 tl~~l~~~a~~~a~~~~~~~~n~~~~~~~Da~~GADivmVkPs--mm----~ld~Ir~~~d~~~~vp--i~aY~vSgeY~ 252 (300)
+.+.+.+++... .+.|||.|-++=. .+ .-+.|+.+++.+|+.+ .+.++.=--+|
T Consensus 148 ~~~~~~~~~~~~------------------~~~G~~~i~l~DT~G~~~P~~v~~lv~~l~~~~~~~~~~~l~~H~Hnd~G 209 (293)
T 3ewb_X 148 DRAFLIEAVQTA------------------IDAGATVINIPDTVGYTNPTEFGQLFQDLRREIKQFDDIIFASHCHDDLG 209 (293)
T ss_dssp CHHHHHHHHHHH------------------HHTTCCEEEEECSSSCCCHHHHHHHHHHHHHHCTTGGGSEEEEECBCTTS
T ss_pred CHHHHHHHHHHH------------------HHcCCCEEEecCCCCCCCHHHHHHHHHHHHHhcCCccCceEEEEeCCCcC
Q ss_pred HHHHHHhCCCCCHHHHHHHHHHHHHHcCCCEE
Q psy15126 253 MLAFAAQAGALDLKRALMETLTCLRRGGADVI 284 (300)
Q Consensus 253 ~~r~Aa~~~~~n~~eal~E~~~~~~r~GAD~I 284 (300)
+ |+--++..+ ++||+.|
T Consensus 210 l--------------a~AN~laA~-~aGa~~v 226 (293)
T 3ewb_X 210 M--------------ATANALAAI-ENGARRV 226 (293)
T ss_dssp C--------------HHHHHHHHH-HTTCCEE
T ss_pred h--------------HHHHHHHHH-HhCCCEE
No 408
>2w6r_A Imidazole glycerol phosphate synthase subunit HISF; lyase, fusion protein, cobalamin, precorrin, novel fold, VIT; 2.10A {Thermotoga maritima}
Probab=25.84 E-value=1.2e+02 Score=25.77 Aligned_cols=33 Identities=15% Similarity=0.217 Sum_probs=22.9
Q ss_pred hhcCCceeec-cCcc------hHHHHHHHHHhhCCCCCEEe
Q psy15126 211 VSQGADFLMV-KPAL------PYLDIISEVKSRHPAYPLFV 244 (300)
Q Consensus 211 a~~GADivmV-kPsm------m~ld~Ir~~~d~~~~vpi~a 244 (300)
.+.|||.|.| .|.. ..++.++++++.. ++|+..
T Consensus 40 ~~~Ga~~i~v~d~~~~~~~~g~~~~~i~~i~~~~-~iPvi~ 79 (266)
T 2w6r_A 40 EKRGAGEILLTSIDRDGTKSGYDTEMIRFVRPLT-TLPIIA 79 (266)
T ss_dssp HHHTCSEEEEEETTTSSCSSCCCHHHHHHHGGGC-CSCEEE
T ss_pred HHCCCCEEEEEecCcccCCCcccHHHHHHHHHhc-CCCEEE
Confidence 4678887765 2221 1388999998875 799987
No 409
>3ndc_A Precorrin-4 C(11)-methyltransferase; SAH; HET: SAH; 2.00A {Rhodobacter capsulatus} PDB: 3nei_A
Probab=25.72 E-value=1.5e+02 Score=26.13 Aligned_cols=91 Identities=10% Similarity=-0.026 Sum_probs=59.1
Q ss_pred cccCCCCCChHHHHHHHHHHhCCCcEEEeeecCCCCCCCCcceeeCCCCcee--cHHhHHHHHHHHHHHHHcCCCcccc-
Q psy15126 8 ASFADTPDNPLFQVIPMIRKQFPSLTIACDVCLCGYTSHGHCAIFNEDGSIH--YEKTLKRLADISKAFSDAGAHIVAP- 84 (300)
Q Consensus 8 ~s~a~~~~~~~~~~i~~ik~~~p~l~i~~Dvclc~yt~hGHcgi~~~~g~i~--nd~Tl~~l~~~A~~~A~aGad~vAP- 84 (300)
|...-+|+.+..||++.|++. ++++..|--+.+ -.-..+..+..+. ...+.+..++..+.+++.|-+++-.
T Consensus 10 G~GpG~~~lLT~~A~~~L~~A--dvV~~~~~~~~~----~ll~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~G~~Va~L~ 83 (264)
T 3ndc_A 10 GAGPGAADLITIRGRDLIASC--PVCLYAGSLVPE----ALLAHCPPGAKIVNTAPMSLDAIIDTIAEAHAAGQDVARLH 83 (264)
T ss_dssp ECBSSCGGGSBHHHHHHHHHC--SEEEECSTTSCG----GGGGGSCTTCEEEECTTSCHHHHHHHHHHHHHHTCCEEEEE
T ss_pred EcCCCChHHHHHHHHHHHHcC--CEEEEECCCCCH----HHHhhcCCCCEEEecCCCCHHHHHHHHHHHHHCCCeEEEEe
Confidence 344557888999999999997 566665532210 0000111122222 2346678888888999999887766
Q ss_pred --CCCCcchHHHHHHHHhhCCC
Q psy15126 85 --SDMMDNRIHAIKQSLFTSRQ 104 (300)
Q Consensus 85 --SdmMDgrv~air~aLd~~g~ 104 (300)
-.+.-|+...+.+.|.+.|+
T Consensus 84 ~GDP~iyg~~~~l~~~l~~~gi 105 (264)
T 3ndc_A 84 SGDLSIWSAMGEQLRRLRALNI 105 (264)
T ss_dssp SBCTTSSCSHHHHHHHHHHTTC
T ss_pred CCCCccccHHHHHHHHHHhCCC
Confidence 34556788888889988887
No 410
>1i3c_A Response regulator RCP1; phytochrome, signaling protein; 1.90A {Synechocystis SP} SCOP: c.23.1.1 PDB: 1jlk_A
Probab=25.67 E-value=2.1e+02 Score=21.24 Aligned_cols=56 Identities=13% Similarity=0.268 Sum_probs=36.5
Q ss_pred CCceeeccCcch---HHHHHHHHHhh--CCCCCEEeEecccccHHHHHHHhCCCCCHHHHHHHHHHHHHHcCCCEEEecc
Q psy15126 214 GADFLMVKPALP---YLDIISEVKSR--HPAYPLFVYQVSGEYAMLAFAAQAGALDLKRALMETLTCLRRGGADVIISYY 288 (300)
Q Consensus 214 GADivmVkPsmm---~ld~Ir~~~d~--~~~vpi~aY~vSgeY~~~r~Aa~~~~~n~~eal~E~~~~~~r~GAD~Ii~y~ 288 (300)
..|+|++--.|+ -++.++++++. ++++||+..+.+..-. +....+ +.||+-.++||
T Consensus 61 ~~dlillD~~lp~~~g~~l~~~l~~~~~~~~~piiils~~~~~~------------------~~~~~~-~~ga~~~l~KP 121 (149)
T 1i3c_A 61 RPNLILLDLNLPKKDGREVLAEIKQNPDLKRIPVVVLTTSHNED------------------DVIASY-ELHVNCYLTKS 121 (149)
T ss_dssp CCSEEEECSCCSSSCHHHHHHHHHHCTTTTTSCEEEEESCCCHH------------------HHHHHH-HTTCSEEEECC
T ss_pred CCCEEEEeCCCCCCcHHHHHHHHHhCcCcCCCeEEEEECCCChH------------------HHHHHH-HcCCcEEEECC
Confidence 468888765443 67888888875 4689999986532211 112233 57888888887
No 411
>3m47_A Orotidine 5'-phosphate decarboxylase; orotidine 5'-monophosphate decarboxylase, mutant I218A, LYAS; 1.20A {Methanothermobacter thermautotrophicusdelta H} SCOP: c.1.2.3 PDB: 3li1_A 3m5z_A 3lty_A 3ltp_A* 3g18_A* 3g1d_A* 3g1f_A* 3g1h_A* 3g1a_A* 3lv6_A* 1klz_A* 3g1y_A 3g22_A* 3g24_A* 3p5z_A* 3siz_A* 3sy5_A* 1loq_A* 1lor_A* 1kly_A* ...
Probab=25.62 E-value=1.3e+02 Score=26.21 Aligned_cols=44 Identities=14% Similarity=0.166 Sum_probs=30.0
Q ss_pred hHHHHHHH--HHhhhcccccCCCCC-ccccchhhhcCCceeeccCcc
Q psy15126 181 TLKRLADI--SKAFSDAVYVPNHNT-DRFQARDVSQGADFLMVKPAL 224 (300)
Q Consensus 181 tl~~l~~~--a~~~a~~~~~~~~n~-~~~~~~Da~~GADivmVkPsm 224 (300)
.++.|.+. ...+.|.=.+|..|| .++...=++.|||+|.|-|.+
T Consensus 55 ~v~~l~~~~g~~v~lD~Kl~DipnTv~~~~~~~~~~gad~vtvh~~~ 101 (228)
T 3m47_A 55 IIAEFRKRFGCRIIADFKVADIPETNEKICRATFKAGADAIIVHGFP 101 (228)
T ss_dssp HHHHHHHHHCCEEEEEEEECSCHHHHHHHHHHHHHTTCSEEEEESTT
T ss_pred HHHHHHhcCCCeEEEEEeecccHhHHHHHHHHHHhCCCCEEEEeccC
Confidence 45566553 345677777777776 334444568999999998874
No 412
>1vrd_A Inosine-5'-monophosphate dehydrogenase; TM1347, structural G joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.18A {Thermotoga maritima} SCOP: c.1.5.1
Probab=25.45 E-value=1.8e+02 Score=27.64 Aligned_cols=57 Identities=25% Similarity=0.349 Sum_probs=33.1
Q ss_pred hhcCCceeeccC--------------cchHHHHH---HHHHhhCCCCCEEeEecccccHHHHHHHhCCCCCHHHHHHHHH
Q psy15126 211 VSQGADFLMVKP--------------ALPYLDII---SEVKSRHPAYPLFVYQVSGEYAMLAFAAQAGALDLKRALMETL 273 (300)
Q Consensus 211 a~~GADivmVkP--------------smm~ld~I---r~~~d~~~~vpi~aY~vSgeY~~~r~Aa~~~~~n~~eal~E~~ 273 (300)
.++|||+|.|.- +.+.+..+ ++++... ++||++=. |..+..+ +.
T Consensus 296 ~~~G~d~I~v~~~~G~~~~~~~~~~~g~p~~~~l~~v~~~~~~~-~ipvia~G--------------GI~~~~d----i~ 356 (494)
T 1vrd_A 296 IKAGADAVKVGVGPGSICTTRVVAGVGVPQLTAVMECSEVARKY-DVPIIADG--------------GIRYSGD----IV 356 (494)
T ss_dssp HHTTCSEEEECSSCSTTCHHHHHHCCCCCHHHHHHHHHHHHHTT-TCCEEEES--------------CCCSHHH----HH
T ss_pred HHcCCCEEEEcCCCCccccccccCCCCccHHHHHHHHHHHHhhc-CCCEEEEC--------------CcCCHHH----HH
Confidence 579999998822 12334444 4444333 78887641 3344433 33
Q ss_pred HHHHHcCCCEEEec
Q psy15126 274 TCLRRGGADVIISY 287 (300)
Q Consensus 274 ~~~~r~GAD~Ii~y 287 (300)
+.+ ..|||.+++-
T Consensus 357 kal-a~GAd~V~iG 369 (494)
T 1vrd_A 357 KAL-AAGAESVMVG 369 (494)
T ss_dssp HHH-HTTCSEEEES
T ss_pred HHH-HcCCCEEEEC
Confidence 445 5799999853
No 413
>2ocz_A 3-dehydroquinate dehydratase; structural genomics, DH streptococcus pyogenes, dehydroshikimate, PSI-2, protein ST initiative; HET: MSE; 1.85A {Streptococcus pyogenes serotype M1}
Probab=25.29 E-value=68 Score=28.14 Aligned_cols=35 Identities=14% Similarity=0.248 Sum_probs=23.1
Q ss_pred hhcCCceeeccCc-ch-----H---HHHHHHHHhhCCCCCEEeEec
Q psy15126 211 VSQGADFLMVKPA-LP-----Y---LDIISEVKSRHPAYPLFVYQV 247 (300)
Q Consensus 211 a~~GADivmVkPs-mm-----~---ld~Ir~~~d~~~~vpi~aY~v 247 (300)
.+.|||++ |=+ |+ . +.+.++.+..+++.|+.+|+.
T Consensus 138 ~~~gaDiv--Kia~~a~~~~D~l~ll~~~~~~~~~~~~~P~I~~~M 181 (231)
T 2ocz_A 138 TKLAPRVV--KIAVMPQSEQDVLDLMNYTRGFKTLNPEQEFATISM 181 (231)
T ss_dssp HHTCCSEE--EEEECCSSHHHHHHHHHHHHHHHHHCTTCEEEEEEC
T ss_pred HHcCCCEE--EEEeecCCHHHHHHHHHHHHHHhhccCCCCEEEEEc
Confidence 57899998 655 33 2 333344444467899999986
No 414
>3tqv_A Nicotinate-nucleotide pyrophosphorylase; glycosyltransferase, transferase; 2.62A {Francisella tularensis subsp}
Probab=25.14 E-value=98 Score=28.68 Aligned_cols=50 Identities=18% Similarity=0.242 Sum_probs=0.0
Q ss_pred ceeeccCc-ch----HHHHHHHHHhhCCCCCEEeEecccccHHHHHHHhCCCCCHHHHHHHHHHHHHHcCCCEEEe
Q psy15126 216 DFLMVKPA-LP----YLDIISEVKSRHPAYPLFVYQVSGEYAMLAFAAQAGALDLKRALMETLTCLRRGGADVIIS 286 (300)
Q Consensus 216 DivmVkPs-mm----~ld~Ir~~~d~~~~vpi~aY~vSgeY~~~r~Aa~~~~~n~~eal~E~~~~~~r~GAD~Ii~ 286 (300)
|+||+|.. .. --.+++++++..|..||-. .| +-+-|....+ ++|||+||.
T Consensus 170 d~vlikdNHi~~~G~i~~Av~~ar~~~~~~~IeV-Ev-------------------~tl~ea~eAl-~aGaD~I~L 224 (287)
T 3tqv_A 170 DAYLIKENHIRSAGGIAKAVTKAKKLDSNKVVEV-EV-------------------TNLDELNQAI-AAKADIVML 224 (287)
T ss_dssp SSEEECTTTC----CHHHHHHHHHHHCTTSCEEE-EE-------------------SSHHHHHHHH-HTTCSEEEE
T ss_pred cEEEEeHHHHHHhCCHHHHHHHHHhhCCCCcEEE-Ee-------------------CCHHHHHHHH-HcCCCEEEE
No 415
>3i10_A Putative glycerophosphoryl diester phosphodiester; NP_812074.1; HET: MSE; 1.35A {Bacteroides thetaiotaomicron vpi-5482}
Probab=25.03 E-value=1.9e+02 Score=26.00 Aligned_cols=63 Identities=17% Similarity=0.221 Sum_probs=40.8
Q ss_pred HHHHHHHHHhhCCCCCEEeEecccccHHHHHHHhCCCCCHHHHH---HHHHHHHHHc-CCCEEEecchHHHHHHHhh
Q psy15126 226 YLDIISEVKSRHPAYPLFVYQVSGEYAMLAFAAQAGALDLKRAL---METLTCLRRG-GADVIISYYTPRVLEWLRE 298 (300)
Q Consensus 226 ~ld~Ir~~~d~~~~vpi~aY~vSgeY~~~r~Aa~~~~~n~~eal---~E~~~~~~r~-GAD~Ii~y~A~~~ld~l~~ 298 (300)
....++++++. +++++.+...+++ ..|. +-+.++ .+....+.+. |+|+|+|-+...+.+||+.
T Consensus 207 ~~~~v~~~~~~--g~~v~~nTlw~~~-------~~g~-~d~~a~~d~~~~~~~l~~~~Gvd~I~TD~P~~l~~yL~~ 273 (278)
T 3i10_A 207 LPPKIKQLLFK--KSLIWYNTLWGSL-------AGNH-DDNLALTDPEKSYGYLIEQLGARILQTDQPAYLLDYLRK 273 (278)
T ss_dssp SHHHHHHHHTT--TSEEEEECSSGGG-------BTTC-CHHHHHHCHHHHHHHHHHTTCEEEEEESCHHHHHHHHHH
T ss_pred hHHHHHHHHHC--CCEEEEEeccccc-------ccCc-cchhhccChHHHHHHHHhcCCCCEEEeCCHHHHHHHHhh
Confidence 45677777764 6899998753332 1122 222222 1234445578 9999999999999999975
No 416
>3s81_A Putative aspartate racemase; structural genomics, center for structural genomics of infec diseases, csgid, alpha beta fold, cytosol; 1.80A {Salmonella enterica subsp} PDB: 3s7z_A
Probab=24.82 E-value=1.5e+02 Score=26.52 Aligned_cols=48 Identities=23% Similarity=0.250 Sum_probs=33.4
Q ss_pred CCCEEeEecccccHHHHHHHhCCCCCHHHHHHHHHHHHHHcCCCEEEec
Q psy15126 239 AYPLFVYQVSGEYAMLAFAAQAGALDLKRALMETLTCLRRGGADVIISY 287 (300)
Q Consensus 239 ~vpi~aY~vSgeY~~~r~Aa~~~~~n~~eal~E~~~~~~r~GAD~Ii~y 287 (300)
+.|...++.. +..-.-.+.+.++-+..+.+.|....+.+.|||+|++-
T Consensus 59 h~p~~~~s~~-~i~~r~~~~~~~g~~~~~~l~~~~~~L~~~Gad~IVIa 106 (268)
T 3s81_A 59 HIPLIVSSIP-DIPDRTACLLSGGPSPYRYLERYLHMLEDAGAECIVIP 106 (268)
T ss_dssp SCCEEEEECT-TSCCHHHHHHHCCCCSHHHHHHHHHHHHHTTCSEEECS
T ss_pred CCCEEEeccC-CHHHHHHHHHhCCchHHHHHHHHHHHHHHcCCCEEEEe
Confidence 4788888652 22222334444556778899999999999999998763
No 417
>3vkj_A Isopentenyl-diphosphate delta-isomerase; type 2 isopentenyl diphosphate isomerase; HET: FNR; 1.70A {Sulfolobus shibatae} PDB: 2zrv_A* 2zrw_A* 2zrx_A* 2zry_A* 2zrz_A* 3b03_A* 3b04_A* 3b05_A* 3b06_A* 2zru_A*
Probab=24.45 E-value=2e+02 Score=27.02 Aligned_cols=23 Identities=22% Similarity=0.072 Sum_probs=14.4
Q ss_pred CCCCHHHHHHHHHHHHHHcCCCEEEecc
Q psy15126 261 GALDLKRALMETLTCLRRGGADVIISYY 288 (300)
Q Consensus 261 ~~~n~~eal~E~~~~~~r~GAD~Ii~y~ 288 (300)
|..+..++ .+.+ ..|||.+++--
T Consensus 275 GI~~~~d~----~kal-~lGA~~v~ig~ 297 (368)
T 3vkj_A 275 GIRSGLDA----AKAI-ALGADIAGMAL 297 (368)
T ss_dssp SCCSHHHH----HHHH-HHTCSEEEECH
T ss_pred CCCCHHHH----HHHH-HcCCCEEEEcH
Confidence 45565443 3445 46999999864
No 418
>3tr9_A Dihydropteroate synthase; biosynthesis of cofactors, prosthetic groups, and carriers, transferase; HET: PT1; 1.90A {Coxiella burnetii}
Probab=24.37 E-value=1.5e+02 Score=27.85 Aligned_cols=47 Identities=26% Similarity=0.362 Sum_probs=29.0
Q ss_pred hhcCCceeecc-----Ccch--------------HHHHHHHHHhhCCCCCEEeEecccccHHHHHHHhC
Q psy15126 211 VSQGADFLMVK-----PALP--------------YLDIISEVKSRHPAYPLFVYQVSGEYAMLAFAAQA 260 (300)
Q Consensus 211 a~~GADivmVk-----Psmm--------------~ld~Ir~~~d~~~~vpi~aY~vSgeY~~~r~Aa~~ 260 (300)
+++|||||=|. |.-. -+-+|+.+++.+ ++||..= |-...-.++|.+.
T Consensus 59 v~~GAdIIDIGgeSTrPga~~~~~~V~~~eE~~Rv~pvI~~l~~~~-~vpISID--T~~~~Va~aAl~a 124 (314)
T 3tr9_A 59 VDEGADILDIGGEATNPFVDIKTDSPSTQIELDRLLPVIDAIKKRF-PQLISVD--TSRPRVMREAVNT 124 (314)
T ss_dssp HHTTCSEEEEECCCSCTTC-----CHHHHHHHHHHHHHHHHHHHHC-CSEEEEE--CSCHHHHHHHHHH
T ss_pred HHCCCCEEEECCCCCCCCcccccCCCCHHHHHHHHHHHHHHHHhhC-CCeEEEe--CCCHHHHHHHHHc
Confidence 89999999775 3211 345666666664 7887544 4455555666543
No 419
>3gve_A YFKN protein; alpha-beta-BETA-alpha sandwich, structural genomics, PSI-2, structure initiative; HET: CIT; 1.25A {Bacillus subtilis subsp}
Probab=24.33 E-value=54 Score=30.21 Aligned_cols=27 Identities=33% Similarity=0.454 Sum_probs=22.4
Q ss_pred CCCHHHHHHHHHHHHHHcCCCEEEecc
Q psy15126 262 ALDLKRALMETLTCLRRGGADVIISYY 288 (300)
Q Consensus 262 ~~n~~eal~E~~~~~~r~GAD~Ii~y~ 288 (300)
+.|.-+++.+....+|++|||+||+-.
T Consensus 189 ~~d~~~~~~~~v~~Lk~~g~D~II~l~ 215 (341)
T 3gve_A 189 VQDIVESANETIPKMKAEGADVIIALA 215 (341)
T ss_dssp ECCHHHHHHHHHHHHHHTTCSEEEEEE
T ss_pred EcCHHHHHHHHHHHHHhcCCCEEEEEe
Confidence 457788899999999888999998743
No 420
>1eep_A Inosine 5'-monophosphate dehydrogenase; alpha-beta barrel, TIM barrel, IMPDH, IMP dehydrogenase, LOO purine biosynthesis, oxidoreductase; 2.40A {Borrelia burgdorferi} SCOP: c.1.5.1
Probab=24.29 E-value=1.9e+02 Score=26.78 Aligned_cols=72 Identities=21% Similarity=0.234 Sum_probs=39.9
Q ss_pred cccCCCCCccccchhhhcCCceeecc------------C--cchHHHHHHHHHhh--CCCCCEEeEecccccHHHHHHHh
Q psy15126 196 VYVPNHNTDRFQARDVSQGADFLMVK------------P--ALPYLDIISEVKSR--HPAYPLFVYQVSGEYAMLAFAAQ 259 (300)
Q Consensus 196 ~~~~~~n~~~~~~~Da~~GADivmVk------------P--smm~ld~Ir~~~d~--~~~vpi~aY~vSgeY~~~r~Aa~ 259 (300)
|.++.-.+-....+=.++|||+|.|. + +.+.+..++++.+. ..++||++= .
T Consensus 197 viv~~v~~~~~a~~a~~~Gad~I~vg~~~G~~~~~~~~~~~g~p~~~~l~~v~~~~~~~~ipVia~--G----------- 263 (404)
T 1eep_A 197 LIAGNIVTKEAALDLISVGADCLKVGIGPGSICTTRIVAGVGVPQITAICDVYEACNNTNICIIAD--G----------- 263 (404)
T ss_dssp EEEEEECSHHHHHHHHTTTCSEEEECSSCSTTSHHHHHHCCCCCHHHHHHHHHHHHTTSSCEEEEE--S-----------
T ss_pred EEEcCCCcHHHHHHHHhcCCCEEEECCCCCcCcCccccCCCCcchHHHHHHHHHHHhhcCceEEEE--C-----------
Confidence 33333344444444467999999882 1 12345555555542 136887763 1
Q ss_pred CCCCCHHHHHHHHHHHHHHcCCCEEEe
Q psy15126 260 AGALDLKRALMETLTCLRRGGADVIIS 286 (300)
Q Consensus 260 ~~~~n~~eal~E~~~~~~r~GAD~Ii~ 286 (300)
|..+..++ .+.+ ..|||.+++
T Consensus 264 -GI~~~~d~----~~al-a~GAd~V~i 284 (404)
T 1eep_A 264 -GIRFSGDV----VKAI-AAGADSVMI 284 (404)
T ss_dssp -CCCSHHHH----HHHH-HHTCSEEEE
T ss_pred -CCCCHHHH----HHHH-HcCCCHHhh
Confidence 33344333 2344 469999998
No 421
>3r12_A Deoxyribose-phosphate aldolase; TIM beta/alpha-barrel, structural genomics, joint center for structural genomics, JCSG; HET: MSE CIT; 1.75A {Thermotoga maritima} SCOP: c.1.10.1 PDB: 1o0y_A* 3r13_A*
Probab=24.14 E-value=4.1e+02 Score=24.22 Aligned_cols=59 Identities=20% Similarity=0.249 Sum_probs=38.2
Q ss_pred hcCCceeeccCcchHHHHHHHHHhhCCCCCEEeEecccccHHHHHHHhCCCCCHHHHHHHHHHHHHHcCCCEE
Q psy15126 212 SQGADFLMVKPALPYLDIISEVKSRHPAYPLFVYQVSGEYAMLAFAAQAGALDLKRALMETLTCLRRGGADVI 284 (300)
Q Consensus 212 ~~GADivmVkPsmm~ld~Ir~~~d~~~~vpi~aY~vSgeY~~~r~Aa~~~~~n~~eal~E~~~~~~r~GAD~I 284 (300)
+-|..-|+|-|+ ++...++.+.. .++.|.+= .||= .|....+.-+.|+...+ +.|||=|
T Consensus 70 ~~~~aaVCV~p~--~V~~a~~~L~g-s~v~v~tV--igFP--------~G~~~~~~Kv~Ea~~Ai-~~GAdEI 128 (260)
T 3r12_A 70 ENRFHGVCVNPC--YVKLAREELEG-TDVKVVTV--VGFP--------LGANETRTKAHEAIFAV-ESGADEI 128 (260)
T ss_dssp HTTCSEEEECGG--GHHHHHHHHTT-SCCEEEEE--ESTT--------TCCSCHHHHHHHHHHHH-HHTCSEE
T ss_pred hcCCcEEEECHH--HHHHHHHHhcC-CCCeEEEE--ecCC--------CCCCcHHHHHHHHHHHH-HcCCCEE
Confidence 348899999998 66667777754 35666543 3331 44445555677888887 5788654
No 422
>4fxs_A Inosine-5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.24A {Vibrio cholerae o1 biovar el tor}
Probab=23.94 E-value=68 Score=31.16 Aligned_cols=16 Identities=25% Similarity=0.347 Sum_probs=12.2
Q ss_pred HHHHHHHHcCCCcccc
Q psy15126 69 DISKAFSDAGAHIVAP 84 (300)
Q Consensus 69 ~~A~~~A~aGad~vAP 84 (300)
+.|..+.++|+|.|.-
T Consensus 284 e~a~~l~~aGaD~I~V 299 (496)
T 4fxs_A 284 EGARALIEAGVSAVKV 299 (496)
T ss_dssp HHHHHHHHHTCSEEEE
T ss_pred HHHHHHHHhCCCEEEE
Confidence 4567778899998864
No 423
>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A
Probab=23.82 E-value=2e+02 Score=26.30 Aligned_cols=47 Identities=15% Similarity=0.139 Sum_probs=31.0
Q ss_pred cCCceeeccCcch---HHHHHHHHHhhCCCCCEEeEecccccHHHHHHHh
Q psy15126 213 QGADFLMVKPALP---YLDIISEVKSRHPAYPLFVYQVSGEYAMLAFAAQ 259 (300)
Q Consensus 213 ~GADivmVkPsmm---~ld~Ir~~~d~~~~vpi~aY~vSgeY~~~r~Aa~ 259 (300)
...|+|++--.|+ =++.++++++..+++||+..+..+.-.....|.+
T Consensus 43 ~~~DlvllDi~mP~~dG~ell~~lr~~~~~~pvI~lT~~~~~~~~~~a~~ 92 (368)
T 3dzd_A 43 LFFPVIVLDVWMPDGDGVNFIDFIKENSPDSVVIVITGHGSVDTAVKAIK 92 (368)
T ss_dssp BCCSEEEEESEETTEETTTHHHHHHHHCTTCEEEEEECSSCCHHHHHHHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhhCCCCeEEEEeCCCCHHHHHHHHh
Confidence 4467776654443 5788888888888999999876444444444433
No 424
>2gou_A Oxidoreductase, FMN-binding; OLD yeallow enzyme, flavoenzyme; HET: BOG FMN PE4; 1.40A {Shewanella oneidensis} PDB: 2gq8_A* 2gq9_A* 2gqa_A*
Probab=23.70 E-value=2.8e+02 Score=25.69 Aligned_cols=72 Identities=11% Similarity=0.021 Sum_probs=0.0
Q ss_pred ccchHhHHHHHHHHHhhhcccccCCCCCccccchhhhcCCceeeccCcch------HHHHHHHHHhhCCCCCEEeEeccc
Q psy15126 176 IHYEKTLKRLADISKAFSDAVYVPNHNTDRFQARDVSQGADFLMVKPALP------YLDIISEVKSRHPAYPLFVYQVSG 249 (300)
Q Consensus 176 i~nd~tl~~l~~~a~~~a~~~~~~~~n~~~~~~~Da~~GADivmVkPsmm------~ld~Ir~~~d~~~~vpi~aY~vSg 249 (300)
++...+++...+++... .++|+|.|-|..... .++.++++++.+ ++||++=
T Consensus 243 ~~~~~~~~~~~~~a~~l------------------~~~G~d~i~v~~~~~~~~~~~~~~~~~~i~~~~-~iPvi~~---- 299 (365)
T 2gou_A 243 TVDADPILTYTAAAALL------------------NKHRIVYLHIAEVDWDDAPDTPVSFKRALREAY-QGVLIYA---- 299 (365)
T ss_dssp CCCSSHHHHHHHHHHHH------------------HHTTCSEEEEECCBTTBCCCCCHHHHHHHHHHC-CSEEEEE----
T ss_pred CCCCCCHHHHHHHHHHH------------------HHcCCCEEEEeCCCcCCCCCccHHHHHHHHHHC-CCcEEEe----
Q ss_pred ccHHHHHHHhCCCCCHHHHHHHHHHHHHHcC-CCEEEe
Q psy15126 250 EYAMLAFAAQAGALDLKRALMETLTCLRRGG-ADVIIS 286 (300)
Q Consensus 250 eY~~~r~Aa~~~~~n~~eal~E~~~~~~r~G-AD~Ii~ 286 (300)
|-++ .|....+.++| ||+|++
T Consensus 300 -----------Ggi~-----~~~a~~~l~~g~aD~V~i 321 (365)
T 2gou_A 300 -----------GRYN-----AEKAEQAINDGLADMIGF 321 (365)
T ss_dssp -----------SSCC-----HHHHHHHHHTTSCSEEEC
T ss_pred -----------CCCC-----HHHHHHHHHCCCcceehh
No 425
>3jyf_A 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'- nucleotidase bifunctional periplasmic...; APC63187.2; HET: EPE TAM; 2.43A {Klebsiella pneumoniae subsp}
Probab=23.70 E-value=56 Score=30.17 Aligned_cols=27 Identities=22% Similarity=0.332 Sum_probs=22.4
Q ss_pred CCCHHHHHHHHHHHHHHcCCCEEEecc
Q psy15126 262 ALDLKRALMETLTCLRRGGADVIISYY 288 (300)
Q Consensus 262 ~~n~~eal~E~~~~~~r~GAD~Ii~y~ 288 (300)
+.|.-|++.+....+|++|||+||+-.
T Consensus 183 ~~d~~e~~~~~v~~lr~~g~D~II~l~ 209 (339)
T 3jyf_A 183 VNDITETARKYIPEMRAKGADVVVVVA 209 (339)
T ss_dssp ECCHHHHHHHHHHHHHHTTCSEEEEEE
T ss_pred EcCHHHHHHHHHHHHHhcCCCEEEEEe
Confidence 357788999999999888999998743
No 426
>3tr2_A Orotidine 5'-phosphate decarboxylase; purines, pyrimidines, nucleosides, nucleotides, lyase; 2.00A {Coxiella burnetii}
Probab=23.69 E-value=2.4e+02 Score=24.86 Aligned_cols=96 Identities=14% Similarity=0.058 Sum_probs=53.1
Q ss_pred hhhcccccCCCCCcc-ccchhhhcCCceeeccCcch--HHHHHHHHHhhCC--CCC-E-EeEec-ccccHHHHHHHhCCC
Q psy15126 191 AFSDAVYVPNHNTDR-FQARDVSQGADFLMVKPALP--YLDIISEVKSRHP--AYP-L-FVYQV-SGEYAMLAFAAQAGA 262 (300)
Q Consensus 191 ~~a~~~~~~~~n~~~-~~~~Da~~GADivmVkPsmm--~ld~Ir~~~d~~~--~vp-i-~aY~v-SgeY~~~r~Aa~~~~ 262 (300)
.|+|.=+.|..||-. ....=.+.|||++.|-|.+- .+...++..+.+. .-| + ..... |-.=..++ +.|+
T Consensus 62 iflDlK~~DI~nTv~~~~~~~~~~gad~vTvh~~~G~~~~~~a~~~~~~~~~~~~~~l~~Vt~LTS~~~~~l~---~~g~ 138 (239)
T 3tr2_A 62 IFLDLKFYDIPQTVAGACRAVAELGVWMMNIHISGGRTMMETVVNALQSITLKEKPLLIGVTILTSLDGSDLK---TLGI 138 (239)
T ss_dssp EEEEEEECSCHHHHHHHHHHHHHTTCSEEEEEGGGCHHHHHHHHHHHHTCCCSSCCEEEEECSCTTCCHHHHH---HTTC
T ss_pred EEEEecccccchHHHHHHHHHHhCCCCEEEEeccCCHHHHHHHHHHHHhcCcCCCceEEEEEEEeeCCHHHHH---hcCC
Confidence 344444545555532 12223679999999999742 5666666665542 123 2 22332 21111332 3443
Q ss_pred -CCHHHHHHHHHHHHHHcCCCEEEecch
Q psy15126 263 -LDLKRALMETLTCLRRGGADVIISYYT 289 (300)
Q Consensus 263 -~n~~eal~E~~~~~~r~GAD~Ii~y~A 289 (300)
....+.+.+....-+++|.|-+++-+.
T Consensus 139 ~~~~~~~v~~~A~~a~~~g~~GvV~s~~ 166 (239)
T 3tr2_A 139 QEKVPDIVCRMATLAKSAGLDGVVCSAQ 166 (239)
T ss_dssp CSCHHHHHHHHHHHHHHHTCCEEECCHH
T ss_pred CCCHHHHHHHHHHHHHHcCCCEEEECch
Confidence 245677777777766779998876654
No 427
>3khd_A Pyruvate kinase; malaria, structural genomics, structural GE consortium, SGC, transferase; 2.70A {Plasmodium falciparum 3D7}
Probab=23.65 E-value=5.1e+02 Score=25.96 Aligned_cols=125 Identities=15% Similarity=0.183 Sum_probs=77.1
Q ss_pred HHHHHHHHHHHHcCCCccccCCCC-cchHHHHHHHHhhCCCCCCcccccchhhhhcccchhhhhhhcCCCCCCCcceeeC
Q psy15126 65 KRLADISKAFSDAGAHIVAPSDMM-DNRIHAIKQSLFTSRQSSTTGLLSYSAKFCSAFYGPFREAAGSAPTFGDRSCYQL 143 (300)
Q Consensus 65 ~~l~~~A~~~A~aGad~vAPSdmM-Dgrv~air~aLd~~g~~~~v~ImsysaK~aS~~YGPfRda~gS~~~~gdr~~yQ~ 143 (300)
+-..+...-..+.|+|+|+.|--= ..-|..+|+.|.+.|- ++.|+
T Consensus 217 kD~~dl~~f~~~~~vD~Ia~SFVr~a~Dv~~~r~~l~~~g~--~i~II-------------------------------- 262 (520)
T 3khd_A 217 KDKNDILNFAIPMGCNFIAASFIQSADDVRLIRNLLGPRGR--HIKII-------------------------------- 262 (520)
T ss_dssp HHHHHHHHTHHHHTCCEEEETTCCSHHHHHHHHHHHTTTTT--TSEEE--------------------------------
T ss_pred HHHHHHHHHHHHcCCCEEEECCCCCHHHHHHHHHHHHhcCC--CCcEE--------------------------------
Confidence 333334345677899999987543 4467888888887764 23333
Q ss_pred CCCCCceEEEEeecccCCCCCCccccccCCCcccchHhHHHHHHHHHhhhcccccCCCCCccccchhhhcCCceeeccCc
Q psy15126 144 PCGSKGLAIRAAVCLCGYTSHGHCAIFNEDGSIHYEKTLKRLADISKAFSDAVYVPNHNTDRFQARDVSQGADFLMVKPA 223 (300)
Q Consensus 144 ~~~~~~~ai~~dvclc~yt~hGHcgi~~~~g~i~nd~tl~~l~~~a~~~a~~~~~~~~n~~~~~~~Da~~GADivmVkPs 223 (300)
+ +|++-+-++.|-+|.. + +|-|||+++
T Consensus 263 ----------A--------------------KIE~~eav~nldeIl~----------------------~-sDGIMVARG 289 (520)
T 3khd_A 263 ----------P--------------------KIENIEGIIHFDKILA----------------------E-SDGIMIARG 289 (520)
T ss_dssp ----------E--------------------EECSHHHHHTHHHHHH----------------------H-SSCEEECHH
T ss_pred ----------E--------------------EECCHHHHHhHHHHHH----------------------h-CCcEEEccc
Confidence 2 4777777877777732 2 588888876
Q ss_pred ch------------HHHHHHHHHhhCCCCCEE-eEecccccHHHHHHHhCCCCCHHHHHHHHHHHHHHcCCCEEEe
Q psy15126 224 LP------------YLDIISEVKSRHPAYPLF-VYQVSGEYAMLAFAAQAGALDLKRALMETLTCLRRGGADVIIS 286 (300)
Q Consensus 224 mm------------~ld~Ir~~~d~~~~vpi~-aY~vSgeY~~~r~Aa~~~~~n~~eal~E~~~~~~r~GAD~Ii~ 286 (300)
.. +=.+|++.... +.|+. +=|. .=+|. .++...+.=+..+...+ -.|+|.||.
T Consensus 290 DLgvEi~~e~vp~~Qk~iI~~c~~a--GKPVi~ATQM--LeSMi-----~~p~PTRAEvsDVanAV-ldGaDavML 355 (520)
T 3khd_A 290 DLGMEISPEKVFLAQKLMISKCNLQ--GKPIITATQM--LESMT-----KNPRPTRAEVTDVANAV-LDGTDCVML 355 (520)
T ss_dssp HHTTTSCGGGHHHHHHHHHHHHHHH--TCCEEECCCC--CGGGG-----TCSSCCHHHHHHHHHHH-HHTCSEEEE
T ss_pred cccccCCHHHHHHHHHHHHHHHHHc--CCCeEEeehh--hHHHh-----cCCCccHHHHHHHHHHH-HhCCCEEEe
Confidence 32 33455555554 45655 5554 22222 24555555556667777 479999998
No 428
>1jcn_A Inosine monophosphate dehydrogenase I; IMPD, IMPDH, guanine nucleotide synthesis, oxidoreductase; HET: CPR; 2.50A {Homo sapiens} SCOP: c.1.5.1 d.37.1.1 PDB: 1jr1_A* 1nf7_A* 1b3o_A* 1nfb_A*
Probab=23.41 E-value=2.2e+02 Score=27.19 Aligned_cols=61 Identities=20% Similarity=0.220 Sum_probs=38.2
Q ss_pred chhhhcCCceeecc--Cc------------c---hHHHHHHHHHhhCCCCCEEeEecccccHHHHHHHhCCCCCHHHHHH
Q psy15126 208 ARDVSQGADFLMVK--PA------------L---PYLDIISEVKSRHPAYPLFVYQVSGEYAMLAFAAQAGALDLKRALM 270 (300)
Q Consensus 208 ~~Da~~GADivmVk--Ps------------m---m~ld~Ir~~~d~~~~vpi~aY~vSgeY~~~r~Aa~~~~~n~~eal~ 270 (300)
..=.++|||.|.|. |+ . ..+..++++++.+ ++||++= | |..+..
T Consensus 311 ~~l~~aGad~I~vg~~~G~~~~t~~~~~~g~~~~~~~~~~~~~~~~~-~ipVia~---G-----------GI~~~~---- 371 (514)
T 1jcn_A 311 KNLIDAGVDGLRVGMGCGSICITQEVMACGRPQGTAVYKVAEYARRF-GVPIIAD---G-----------GIQTVG---- 371 (514)
T ss_dssp HHHHHHTCSEEEECSSCSCCBTTBCCCSCCCCHHHHHHHHHHHHGGG-TCCEEEE---S-----------CCCSHH----
T ss_pred HHHHHcCCCEEEECCCCCcccccccccCCCccchhHHHHHHHHHhhC-CCCEEEE---C-----------CCCCHH----
Confidence 33457999999773 22 1 1577788888775 7998863 1 233443
Q ss_pred HHHHHHHHcCCCEEEecc
Q psy15126 271 ETLTCLRRGGADVIISYY 288 (300)
Q Consensus 271 E~~~~~~r~GAD~Ii~y~ 288 (300)
++.+.+ ..|||.+++--
T Consensus 372 di~kal-a~GAd~V~iG~ 388 (514)
T 1jcn_A 372 HVVKAL-ALGASTVMMGS 388 (514)
T ss_dssp HHHHHH-HTTCSEEEEST
T ss_pred HHHHHH-HcCCCeeeECH
Confidence 233344 57999988643
No 429
>1vyr_A Pentaerythritol tetranitrate reductase; oxidoreductase, flavoenzyme, explosive degradation, steroid binding; HET: FMN TNF; 0.9A {Enterobacter cloacae} SCOP: c.1.4.1 PDB: 1gvq_A* 1gvr_A* 1gvs_A* 1h50_A* 1h51_A* 1h60_A* 1h61_A* 1h62_A* 1h63_A* 1gvo_A* 2aba_A* 3f03_K* 3kft_A* 3p7y_A* 3p80_A* 3p81_A* 3p62_A* 3p8i_A* 2abb_A* 3p67_A* ...
Probab=23.40 E-value=3.4e+02 Score=25.12 Aligned_cols=34 Identities=12% Similarity=0.074 Sum_probs=23.3
Q ss_pred hhcCCceeeccCcc------hHHHHHHHHHhhCCCCCEEeE
Q psy15126 211 VSQGADFLMVKPAL------PYLDIISEVKSRHPAYPLFVY 245 (300)
Q Consensus 211 a~~GADivmVkPsm------m~ld~Ir~~~d~~~~vpi~aY 245 (300)
.++|+|+|-|.... ..++.++++++.. ++||++=
T Consensus 261 ~~~G~d~i~v~~~~~~~~~~~~~~~~~~v~~~~-~iPvi~~ 300 (364)
T 1vyr_A 261 AKRGIAYLHMSETDLAGGKPYSEAFRQKVRERF-HGVIIGA 300 (364)
T ss_dssp HHTTCSEEEEECCBTTBCCCCCHHHHHHHHHHC-CSEEEEE
T ss_pred HHhCCCEEEEecCcccCCCcccHHHHHHHHHHC-CCCEEEE
Confidence 46788888765421 1367788888876 6898764
No 430
>2jbm_A Nicotinate-nucleotide pyrophosphorylase; NAD, enzyme, metabolism, transferase, polymorphism, glycosyltransferase, pyridine nucleotide biosynthesis; HET: SRT; 2.0A {Homo sapiens} PDB: 3lar_A
Probab=23.31 E-value=1.3e+02 Score=27.53 Aligned_cols=65 Identities=14% Similarity=0.213 Sum_probs=42.1
Q ss_pred HHHHHHHHHHhCCC-cEEEeeecCCCCCCCCcceeeCCCCceecHHhHHHHHHHHHHHHHcCCCccccCCCCcchHHHHH
Q psy15126 18 LFQVIPMIRKQFPS-LTIACDVCLCGYTSHGHCAIFNEDGSIHYEKTLKRLADISKAFSDAGAHIVAPSDMMDNRIHAIK 96 (300)
Q Consensus 18 ~~~~i~~ik~~~p~-l~i~~Dvclc~yt~hGHcgi~~~~g~i~nd~Tl~~l~~~A~~~A~aGad~vAPSdmMDgrv~air 96 (300)
+.++++.+|+.+|. ..|+.-| + |+ +++.+..++|+|+|-...|-...+..++
T Consensus 183 ~~~ai~~~r~~~~~~~~i~vev--------------------~---tl----ee~~~A~~aGaD~I~ld~~~~~~l~~~v 235 (299)
T 2jbm_A 183 VEKAVRAARQAADFALKVEVEC--------------------S---SL----QEAVQAAEAGADLVLLDNFKPEELHPTA 235 (299)
T ss_dssp HHHHHHHHHHHHTTTSCEEEEE--------------------S---SH----HHHHHHHHTTCSEEEEESCCHHHHHHHH
T ss_pred HHHHHHHHHHhCCcCCeEEEec--------------------C---CH----HHHHHHHHcCCCEEEECCCCHHHHHHHH
Confidence 56789999998874 3333211 1 12 3444555789999999777777777777
Q ss_pred HHHhhCCCCCCcccc
Q psy15126 97 QSLFTSRQSSTTGLL 111 (300)
Q Consensus 97 ~aLd~~g~~~~v~Im 111 (300)
+.++. ++ .++.|.
T Consensus 236 ~~l~~-~~-~~~~I~ 248 (299)
T 2jbm_A 236 TVLKA-QF-PSVAVE 248 (299)
T ss_dssp HHHHH-HC-TTSEEE
T ss_pred HHhhc-cC-CCeeEE
Confidence 77765 55 455553
No 431
>1viz_A PCRB protein homolog; structural genomics, unknown function; 1.85A {Bacillus subtilis} SCOP: c.1.4.1
Probab=23.15 E-value=64 Score=28.84 Aligned_cols=31 Identities=19% Similarity=0.287 Sum_probs=22.6
Q ss_pred hhcCCceeeccCc-ch----HHHHHHHHHhhCCCCCEE
Q psy15126 211 VSQGADFLMVKPA-LP----YLDIISEVKSRHPAYPLF 243 (300)
Q Consensus 211 a~~GADivmVkPs-mm----~ld~Ir~~~d~~~~vpi~ 243 (300)
.++|||+|++.=| -+ -++.++++++ .++||.
T Consensus 30 ~~~GaD~ielG~S~Gvt~~~~~~~v~~ir~--~~~Piv 65 (240)
T 1viz_A 30 CESGTDAVIIGGSDGVTEDNVLRMMSKVRR--FLVPCV 65 (240)
T ss_dssp HTSCCSEEEECC----CHHHHHHHHHHHTT--SSSCEE
T ss_pred HHcCCCEEEECCCCCCCHHHHHHHHHHhhC--cCCCEE
Confidence 6899999999877 23 5677788776 478876
No 432
>2hjp_A Phosphonopyruvate hydrolase; phosporus-Ca cleavage, PEP mutase/isocitrate lyase superfamily; HET: XYS PPR; 1.90A {Variovorax SP} PDB: 2dua_A* 2hrw_A
Probab=23.15 E-value=65 Score=29.58 Aligned_cols=37 Identities=19% Similarity=0.205 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHHcCCCccccCC-CCc-chHHHHHHHHh
Q psy15126 64 LKRLADISKAFSDAGAHIVAPSD-MMD-NRIHAIKQSLF 100 (300)
Q Consensus 64 l~~l~~~A~~~A~aGad~vAPSd-mMD-grv~air~aLd 100 (300)
++.+.+.|+.+++||||+|-+-. .-+ ..+..+.+++.
T Consensus 165 ~~~ai~Ra~ay~eAGAd~i~~e~~~~~~~~~~~i~~~~~ 203 (290)
T 2hjp_A 165 QQEAVRRGQAYEEAGADAILIHSRQKTPDEILAFVKSWP 203 (290)
T ss_dssp HHHHHHHHHHHHHTTCSEEEECCCCSSSHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHcCCcEEEeCCCCCCHHHHHHHHHHcC
Confidence 78999999999999999998865 554 67777777773
No 433
>2oog_A Glycerophosphoryl diester phosphodiesterase; phosphatase, ST genomics, protein structure initiative, PSI; 2.20A {Staphylococcus aureus subsp} PDB: 2p76_A
Probab=23.05 E-value=99 Score=27.16 Aligned_cols=64 Identities=19% Similarity=0.203 Sum_probs=41.9
Q ss_pred hcCCceeeccCcc--hHHHHHHHHHhhCCCCCEEeEecccccHHHHHHHhCCCCCHHHHHHHHHHHHHHcCCCEEEecch
Q psy15126 212 SQGADFLMVKPAL--PYLDIISEVKSRHPAYPLFVYQVSGEYAMLAFAAQAGALDLKRALMETLTCLRRGGADVIISYYT 289 (300)
Q Consensus 212 ~~GADivmVkPsm--m~ld~Ir~~~d~~~~vpi~aY~vSgeY~~~r~Aa~~~~~n~~eal~E~~~~~~r~GAD~Ii~y~A 289 (300)
...++.+ .|.. ..-..|+++++. +++|.+|.| |..+. +..+.+.|+|.|||-+-
T Consensus 216 ~~~~~~v--~~~~~~~~~~~v~~~~~~--G~~v~~wTv----------------n~~~~----~~~l~~~GVdgIiTD~P 271 (287)
T 2oog_A 216 RSYAIGL--GPDYTDLTEQNTHHLKDL--GFIVHPYTV----------------NEKAD----MLRLNKYGVDGVFTNFA 271 (287)
T ss_dssp HTTCSEE--EEBGGGCCHHHHHHHHHT--TCEECCBCC----------------CSHHH----HHHHHHHTCSEEEESCH
T ss_pred hhhheEE--cccHhhcCHHHHHHHHHC--CCeEEEEeC----------------CCHHH----HHHHHHcCCCEEEeCCH
Confidence 3445555 5542 234567777764 689999977 33322 22333579999999998
Q ss_pred HHHHHHHhhC
Q psy15126 290 PRVLEWLRED 299 (300)
Q Consensus 290 ~~~ld~l~~~ 299 (300)
..+.++|+++
T Consensus 272 ~~~~~~~~~~ 281 (287)
T 2oog_A 272 DKYKEVIKEG 281 (287)
T ss_dssp HHHHHHHHC-
T ss_pred HHHHHHHhcc
Confidence 8888888764
No 434
>4ef8_A Dihydroorotate dehydrogenase; phenyl isothiocyanate, PYRD, oxidoreductase, oxidoreductase-oxidor inhibitor complex; HET: FMN; 1.56A {Leishmania major} PDB: 3gye_A* 3gz3_A* 4ef9_A* 3tro_A* 3tjx_A*
Probab=22.88 E-value=2e+02 Score=27.02 Aligned_cols=47 Identities=19% Similarity=0.157 Sum_probs=32.0
Q ss_pred HHHHHHHHHhhCCCCCEEeEecccccHHHHHHHhCCCCCHHHHHHHHHHHHHHcCCCEEEecchHH
Q psy15126 226 YLDIISEVKSRHPAYPLFVYQVSGEYAMLAFAAQAGALDLKRALMETLTCLRRGGADVIISYYTPR 291 (300)
Q Consensus 226 ~ld~Ir~~~d~~~~vpi~aY~vSgeY~~~r~Aa~~~~~n~~eal~E~~~~~~r~GAD~Ii~y~A~~ 291 (300)
-++.|+++++..+++||++=. |..+.+++ .| .+ ++|||.|+++-+.-
T Consensus 264 a~~~i~~v~~~~~~ipII~~G--------------GI~s~~da-~~---~l-~aGAd~V~vgra~l 310 (354)
T 4ef8_A 264 ALANINAFYRRCPGKLIFGCG--------------GVYTGEDA-FL---HV-LAGASMVQVGTALQ 310 (354)
T ss_dssp HHHHHHHHHHHCTTSEEEEES--------------CCCSHHHH-HH---HH-HHTEEEEEECHHHH
T ss_pred HHHHHHHHHHhCCCCCEEEEC--------------CcCCHHHH-HH---HH-HcCCCEEEEhHHHH
Confidence 478888888886689988641 34454433 33 34 47999999987654
No 435
>1wv2_A Thiazole moeity, thiazole biosynthesis protein THIG; structural genomics, protein structure initiative, PSI; 2.90A {Pseudomonas aeruginosa} SCOP: c.1.31.1
Probab=22.44 E-value=2.6e+02 Score=25.90 Aligned_cols=92 Identities=16% Similarity=0.115 Sum_probs=51.7
Q ss_pred ccchHhHHHHHHHHHhhhcccccCCCCCcccc-chhhhcCCceeeccCcc-------hHHHHHHHHHhhCCCCCEEeEec
Q psy15126 176 IHYEKTLKRLADISKAFSDAVYVPNHNTDRFQ-ARDVSQGADFLMVKPAL-------PYLDIISEVKSRHPAYPLFVYQV 247 (300)
Q Consensus 176 i~nd~tl~~l~~~a~~~a~~~~~~~~n~~~~~-~~Da~~GADivmVkPsm-------m~ld~Ir~~~d~~~~vpi~aY~v 247 (300)
-++.+|+++.-+.... -+.|. |.-+-|-.. .+-.+.|+++||.-|+. .-.+.|+.+++. +++||++
T Consensus 119 pD~~~tv~aa~~L~~~-Gf~Vl-py~~dd~~~akrl~~~G~~aVmPlg~pIGsG~Gi~~~~lI~~I~e~-~~vPVI~--- 192 (265)
T 1wv2_A 119 PNVVETLKAAEQLVKD-GFDVM-VYTSDDPIIARQLAEIGCIAVMPLAGLIGSGLGICNPYNLRIILEE-AKVPVLV--- 192 (265)
T ss_dssp BCHHHHHHHHHHHHTT-TCEEE-EEECSCHHHHHHHHHSCCSEEEECSSSTTCCCCCSCHHHHHHHHHH-CSSCBEE---
T ss_pred cCHHHHHHHHHHHHHC-CCEEE-EEeCCCHHHHHHHHHhCCCEEEeCCccCCCCCCcCCHHHHHHHHhc-CCCCEEE---
Confidence 4677777765444222 22222 212222233 33357999999885531 246677888875 5899887
Q ss_pred ccccHHHHHHHhCCCCCHHHHHHHHHHHHHHcCCCEEEecch
Q psy15126 248 SGEYAMLAFAAQAGALDLKRALMETLTCLRRGGADVIISYYT 289 (300)
Q Consensus 248 SgeY~~~r~Aa~~~~~n~~eal~E~~~~~~r~GAD~Ii~y~A 289 (300)
+.|....+++ ...+ +.|||-|++--+
T Consensus 193 -----------eGGI~TPsDA----a~Am-eLGAdgVlVgSA 218 (265)
T 1wv2_A 193 -----------DAGVGTASDA----AIAM-ELGCEAVLMNTA 218 (265)
T ss_dssp -----------ESCCCSHHHH----HHHH-HHTCSEEEESHH
T ss_pred -----------eCCCCCHHHH----HHHH-HcCCCEEEEChH
Confidence 2344444332 2234 468888887654
No 436
>1o4u_A Type II quinolic acid phosphoribosyltransferase; structural genomics, joint center for structural genomics, J protein structure initiative; 2.50A {Thermotoga maritima} SCOP: c.1.17.1 d.41.2.1
Probab=22.38 E-value=95 Score=28.50 Aligned_cols=43 Identities=28% Similarity=0.369 Sum_probs=0.0
Q ss_pred HhHHHHHHHHHhhhcccccCCCCCccccchhhhcCCceeeccCcch--HHHHHHHHHhhCCCCCEEe
Q psy15126 180 KTLKRLADISKAFSDAVYVPNHNTDRFQARDVSQGADFLMVKPALP--YLDIISEVKSRHPAYPLFV 244 (300)
Q Consensus 180 ~tl~~l~~~a~~~a~~~~~~~~n~~~~~~~Da~~GADivmVkPsmm--~ld~Ir~~~d~~~~vpi~a 244 (300)
.|++.+.+. +++|||+||+-+-.+ .-.+++.++..++++||.+
T Consensus 201 ~tleea~eA----------------------~~aGaD~I~LDn~~~e~l~~av~~l~~~~~~v~ieA 245 (285)
T 1o4u_A 201 ENLEDALRA----------------------VEAGADIVMLDNLSPEEVKDISRRIKDINPNVIVEV 245 (285)
T ss_dssp SSHHHHHHH----------------------HHTTCSEEEEESCCHHHHHHHHHHHHHHCTTSEEEE
T ss_pred CCHHHHHHH----------------------HHcCCCEEEECCCCHHHHHHHHHHhhccCCCceEEE
No 437
>2i14_A Nicotinate-nucleotide pyrophosphorylase; ligand binding, phosphoribosylpyrophosphate, Zn metal ION, structural genomics, PSI; HET: PCP; 2.90A {Pyrococcus furiosus} SCOP: c.1.17.1 d.41.2.1
Probab=22.38 E-value=1.7e+02 Score=27.79 Aligned_cols=67 Identities=6% Similarity=-0.034 Sum_probs=40.6
Q ss_pred HHHHHHHHHHhCCC---cEEEeeecCCCCCCCCcceeeCCCCceecHHhHHHHHHHHHHHHH---cCCCcccc-C-----
Q psy15126 18 LFQVIPMIRKQFPS---LTIACDVCLCGYTSHGHCAIFNEDGSIHYEKTLKRLADISKAFSD---AGAHIVAP-S----- 85 (300)
Q Consensus 18 ~~~~i~~ik~~~p~---l~i~~Dvclc~yt~hGHcgi~~~~g~i~nd~Tl~~l~~~A~~~A~---aGad~vAP-S----- 85 (300)
..+|++..++.||+ +.+-+| .|.. -++.|+..++ +|++.|-+ |
T Consensus 193 ~~~A~~~~~~~~p~~~~~~vlvD----T~d~---------------------~~~~al~~~~~~~~~~d~IrlDs~~~~~ 247 (395)
T 2i14_A 193 QVKAWKYFDEVIEEEVPRIALVD----TFYD---------------------EKVEAVMAAEALGKKLFAVRLDTPSSRR 247 (395)
T ss_dssp HHHHHHHHHHHSCSSSCCEEECC----SSBC---------------------HHHHHHHHHTTTGGGCCEEEECCCTTTC
T ss_pred HHHHHHHHHHhCCCCccEEEEec----cchH---------------------HHHHHHHHHHHhccCCcEEEeCCCCCCc
Confidence 56899999999996 333333 3311 1122333333 67887777 4
Q ss_pred CCCcchHHHHHHHHhhCCCCCCccc
Q psy15126 86 DMMDNRIHAIKQSLFTSRQSSTTGL 110 (300)
Q Consensus 86 dmMDgrv~air~aLd~~g~~~~v~I 110 (300)
..+---+..+|+.|++.|+ .++.|
T Consensus 248 gd~~~~v~~~r~~ld~~G~-~~~~I 271 (395)
T 2i14_A 248 GNFRKIIEEVRWELKVRGY-DWVKI 271 (395)
T ss_dssp SCHHHHHHHHHHHHHHTTC-CSCEE
T ss_pred ccHHHHHHHHHHHHHhCCC-CceEE
Confidence 4455567777788888887 45544
No 438
>3ih1_A Methylisocitrate lyase; alpha-beta structure, TIM-barrel, center for structural GENO infectious diseases, csgid; 2.00A {Bacillus anthracis str} PDB: 3kz2_A
Probab=22.34 E-value=65 Score=29.95 Aligned_cols=37 Identities=16% Similarity=0.346 Sum_probs=28.2
Q ss_pred hHHHHHHHHHHHHHcCCCccccCCCCc-chHHHHHHHH
Q psy15126 63 TLKRLADISKAFSDAGAHIVAPSDMMD-NRIHAIKQSL 99 (300)
Q Consensus 63 Tl~~l~~~A~~~A~aGad~vAPSdmMD-grv~air~aL 99 (300)
.++.+.+.|..+++||||+|-+-..-+ ..+..+.+++
T Consensus 173 g~~~ai~Ra~ay~eAGAD~i~~e~~~~~~~~~~i~~~~ 210 (305)
T 3ih1_A 173 GLDEAIERANAYVKAGADAIFPEALQSEEEFRLFNSKV 210 (305)
T ss_dssp CHHHHHHHHHHHHHHTCSEEEETTCCSHHHHHHHHHHS
T ss_pred CHHHHHHHHHHHHHcCCCEEEEcCCCCHHHHHHHHHHc
Confidence 488999999999999999998855544 4455555554
No 439
>1ps9_A 2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel, flavodoxin, flavin, electron transfer, hydride transfer, oxidoreductase; HET: FAD FMN NAP MDE; 2.20A {Escherichia coli} SCOP: c.1.4.1 c.3.1.1 c.4.1.1
Probab=22.27 E-value=2.2e+02 Score=27.95 Aligned_cols=18 Identities=17% Similarity=0.337 Sum_probs=14.8
Q ss_pred HHHHHHHHHhhCCCCCEEe
Q psy15126 226 YLDIISEVKSRHPAYPLFV 244 (300)
Q Consensus 226 ~ld~Ir~~~d~~~~vpi~a 244 (300)
+++.++++++.+ ++||++
T Consensus 268 ~~~~~~~i~~~~-~iPvi~ 285 (671)
T 1ps9_A 268 FSWVTRKLKGHV-SLPLVT 285 (671)
T ss_dssp THHHHHHHTTSC-SSCEEE
T ss_pred HHHHHHHHHHhc-CceEEE
Confidence 478899998876 799976
No 440
>2nx9_A Oxaloacetate decarboxylase 2, subunit alpha; carboxyltransferase structure, B enzymes, Zn2+ binding site, TIM-barrel fold, lyase; 1.70A {Vibrio cholerae}
Probab=22.24 E-value=1.3e+02 Score=29.41 Aligned_cols=66 Identities=18% Similarity=0.313 Sum_probs=43.6
Q ss_pred HHHHHHHHHHhCCCcEEEeeecCCCCCCCCcceeeCCCCceecHHhHHHHHHHHHHHHHcCCCccccCCCC----cchHH
Q psy15126 18 LFQVIPMIRKQFPSLTIACDVCLCGYTSHGHCAIFNEDGSIHYEKTLKRLADISKAFSDAGAHIVAPSDMM----DNRIH 93 (300)
Q Consensus 18 ~~~~i~~ik~~~p~l~i~~Dvclc~yt~hGHcgi~~~~g~i~nd~Tl~~l~~~A~~~A~aGad~vAPSdmM----Dgrv~ 93 (300)
+.++|+.+|+.- ..+..++| |+. + ...+++.+++.+..+.++||+.|+..||. +.++.
T Consensus 129 i~~~i~~ak~~G--~~v~~~i~---~~~----------~---~~~~~e~~~~~a~~l~~~Gad~I~l~DT~G~~~P~~v~ 190 (464)
T 2nx9_A 129 MQQALQAVKKMG--AHAQGTLC---YTT----------S---PVHNLQTWVDVAQQLAELGVDSIALKDMAGILTPYAAE 190 (464)
T ss_dssp HHHHHHHHHHTT--CEEEEEEE---CCC----------C---TTCCHHHHHHHHHHHHHTTCSEEEEEETTSCCCHHHHH
T ss_pred HHHHHHHHHHCC--CEEEEEEE---eee----------C---CCCCHHHHHHHHHHHHHCCCCEEEEcCCCCCcCHHHHH
Confidence 556777777764 44555553 211 1 12378899999999999999999997654 55666
Q ss_pred HHHHHHhh
Q psy15126 94 AIKQSLFT 101 (300)
Q Consensus 94 air~aLd~ 101 (300)
.+-++|.+
T Consensus 191 ~lv~~l~~ 198 (464)
T 2nx9_A 191 ELVSTLKK 198 (464)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 65555544
No 441
>3ojc_A Putative aspartate/glutamate racemase; structural genomics, csgid, center for structural genomics O infectious diseases, alpha beta; 1.75A {Yersinia pestis}
Probab=22.16 E-value=1.8e+02 Score=25.11 Aligned_cols=46 Identities=20% Similarity=0.336 Sum_probs=32.9
Q ss_pred CCEEeEecccccHHHHHHHhCC-CCCHHHHHHHHHHHHHHcCCCEEEec
Q psy15126 240 YPLFVYQVSGEYAMLAFAAQAG-ALDLKRALMETLTCLRRGGADVIISY 287 (300)
Q Consensus 240 vpi~aY~vSgeY~~~r~Aa~~~-~~n~~eal~E~~~~~~r~GAD~Ii~y 287 (300)
-++.-|++. +..+.+....| |-+..+.+.|....+.++|||+|++-
T Consensus 37 ~~~~~~s~~--~~~~~~~~~~~~~~~~~~~l~~~~~~L~~~g~~~ivia 83 (231)
T 3ojc_A 37 AKIILYSVD--FHEIEQLQAKGDWQTAAQLLSNAAISLKHAGAEVIVVC 83 (231)
T ss_dssp CCEEEEECC--HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCCEEEEC
T ss_pred ccceeeCCC--hhhHHHHHHCCChhHHHHHHHHHHHHHHhcCCCEEEEe
Confidence 458888773 44444444443 66667888999999989999998863
No 442
>1ydh_A AT5G11950; structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG; 2.15A {Arabidopsis thaliana} SCOP: c.129.1.1 PDB: 2q4d_A
Probab=22.00 E-value=2.2e+02 Score=24.94 Aligned_cols=51 Identities=16% Similarity=0.165 Sum_probs=38.2
Q ss_pred CCceeeccCcch-HHHHHHHHHhh----CCCCCEEeEecccccHHHHHH----HhCCCCC
Q psy15126 214 GADFLMVKPALP-YLDIISEVKSR----HPAYPLFVYQVSGEYAMLAFA----AQAGALD 264 (300)
Q Consensus 214 GADivmVkPsmm-~ld~Ir~~~d~----~~~vpi~aY~vSgeY~~~r~A----a~~~~~n 264 (300)
=+|.++|-|+-. .|+-|-+++.- ....||.-|.+.|+|.++..- ++.|.++
T Consensus 105 ~sda~I~lpGG~GTLdElfE~lt~~qlg~~~kPvvll~~~gfw~~l~~~l~~~~~~Gfi~ 164 (216)
T 1ydh_A 105 EAEAFIALPGGYGTMEELLEMITWSQLGIHKKTVGLLNVDGYYNNLLALFDTGVEEGFIK 164 (216)
T ss_dssp HCSEEEECSCSHHHHHHHHHHHHHHHHTSCCCEEEEECGGGTTHHHHHHHHHHHHTTSSC
T ss_pred hCCEEEEeCCCccHHHHHHHHHHHHHhcccCCCEEEecCCccchHHHHHHHHHHHCCCCC
Confidence 378888999855 78877777531 237999999999999987764 4567654
No 443
>1vc4_A Indole-3-glycerol phosphate synthase; lyase, tryptophan biosynthesis, riken structural genomics/PR initiative, RSGI, structural genomics; 1.80A {Thermus thermophilus} SCOP: c.1.2.4
Probab=21.86 E-value=3.3e+02 Score=23.94 Aligned_cols=33 Identities=21% Similarity=0.132 Sum_probs=20.6
Q ss_pred hhcCCceeeccC--cch--HHHHHHHHHhhCCCCCEEe
Q psy15126 211 VSQGADFLMVKP--ALP--YLDIISEVKSRHPAYPLFV 244 (300)
Q Consensus 211 a~~GADivmVkP--smm--~ld~Ir~~~d~~~~vpi~a 244 (300)
.+.||+.|-|-- ... ....++.+++.. ++||..
T Consensus 75 ~~~GA~~isvlt~~~~f~G~~~~l~~i~~~v-~lPvl~ 111 (254)
T 1vc4_A 75 ARGGARAVSVLTEPHRFGGSLLDLKRVREAV-DLPLLR 111 (254)
T ss_dssp HHTTCSEEEEECCCSSSCCCHHHHHHHHHHC-CSCEEE
T ss_pred HHcCCCEEEEecchhhhccCHHHHHHHHHhc-CCCEEE
Confidence 689999998731 111 344555555565 799864
No 444
>1b73_A Glutamate racemase; isomerase; 2.30A {Aquifex pyrophilus} SCOP: c.78.2.1 c.78.2.1 PDB: 1b74_A*
Probab=21.83 E-value=1.5e+02 Score=25.71 Aligned_cols=52 Identities=17% Similarity=0.291 Sum_probs=36.7
Q ss_pred HHHHHHHhCCCcEE--EeeecCCCCCCCCcceeeCCCCceecHHhHHHHHHHHHHHHHcCCCcccc
Q psy15126 21 VIPMIRKQFPSLTI--ACDVCLCGYTSHGHCAIFNEDGSIHYEKTLKRLADISKAFSDAGAHIVAP 84 (300)
Q Consensus 21 ~i~~ik~~~p~l~i--~~Dvclc~yt~hGHcgi~~~~g~i~nd~Tl~~l~~~A~~~A~aGad~vAP 84 (300)
..+.|++..|+-.+ .+|-.-.||. .-..+.-.+++.+.+..+.+.|+|.|..
T Consensus 15 v~~~l~~~~P~~~~iy~~D~~~~pyG------------~~s~~~i~~~~~~~~~~L~~~g~d~ivi 68 (254)
T 1b73_A 15 VLKAIRNRYRKVDIVYLGDTARVPYG------------IRSKDTIIRYSLECAGFLKDKGVDIIVV 68 (254)
T ss_dssp HHHHHHHHSTTCEEEEEECTTTCCCT------------TSCHHHHHHHHHHHHHHHHTTTCSEEEE
T ss_pred HHHHHHHhCCCCcEEEeecCCCCCCC------------cCCHHHHHHHHHHHHHHHHHCCCCEEEE
Confidence 67888999997433 4999888882 2223444566667777777889998876
No 445
>2otd_A Glycerophosphodiester phosphodiesterase; structural genomics PSI-2, protein structure initiative, midwest center for STR genomics, hydrolase; 2.60A {Shigella flexneri}
Probab=21.73 E-value=68 Score=27.42 Aligned_cols=63 Identities=16% Similarity=0.103 Sum_probs=40.1
Q ss_pred hhcCCceeeccCcc--hHHHHHHHHHhhCCCCCEEeEecccccHHHHHHHhCCCCCHHHHHHHHHHHHHHcCCCEEEecc
Q psy15126 211 VSQGADFLMVKPAL--PYLDIISEVKSRHPAYPLFVYQVSGEYAMLAFAAQAGALDLKRALMETLTCLRRGGADVIISYY 288 (300)
Q Consensus 211 a~~GADivmVkPsm--m~ld~Ir~~~d~~~~vpi~aY~vSgeY~~~r~Aa~~~~~n~~eal~E~~~~~~r~GAD~Ii~y~ 288 (300)
.+.|++.| .|.. ..-..|+++++. ++++.+|.| |..+. +..+.+.|+|.|||-+
T Consensus 181 ~~~~~~~i--~~~~~~~~~~~v~~~~~~--G~~v~~wTv----------------n~~~~----~~~l~~~GvdgI~TD~ 236 (247)
T 2otd_A 181 ARLGCVSI--HLNHKLLDKARVMQLKDA--GLRILVYTV----------------NKPQH----AAELLRWGVDCICTDA 236 (247)
T ss_dssp HHHTCSEE--EEEGGGCCHHHHHHHHHT--TCEEEEECC----------------CCHHH----HHHHHHHTCSEEEESC
T ss_pred HHcCCeEE--ecChHhCCHHHHHHHHHC--CCEEEEEcc----------------CCHHH----HHHHHHcCCCEEEeCC
Confidence 45688888 5552 234677777764 699999976 33322 2333467999999976
Q ss_pred hHHHHHHHh
Q psy15126 289 TPRVLEWLR 297 (300)
Q Consensus 289 A~~~ld~l~ 297 (300)
-..+.++|+
T Consensus 237 p~~~~~~l~ 245 (247)
T 2otd_A 237 IDVIGPNFT 245 (247)
T ss_dssp TTTSCTTCC
T ss_pred HHHHHHHHh
Confidence 554444443
No 446
>1aj0_A DHPS, dihydropteroate synthase; antibiotic, resistance, transferase, folate, biosynthesis; HET: PH2 SAN; 2.00A {Escherichia coli} SCOP: c.1.21.1 PDB: 1aj2_A* 1ajz_A 3tyz_A* 3tyu_A* 3tzf_A* 3tzn_A
Probab=21.59 E-value=2.4e+02 Score=25.67 Aligned_cols=61 Identities=15% Similarity=0.218 Sum_probs=0.0
Q ss_pred hHHHHHHHHHhhhcccccCCCCCccccchhhhcCCceeeccC-cc---------h-----HHHHHHHHHhhCCCCCEEeE
Q psy15126 181 TLKRLADISKAFSDAVYVPNHNTDRFQARDVSQGADFLMVKP-AL---------P-----YLDIISEVKSRHPAYPLFVY 245 (300)
Q Consensus 181 tl~~l~~~a~~~a~~~~~~~~n~~~~~~~Da~~GADivmVkP-sm---------m-----~ld~Ir~~~d~~~~vpi~aY 245 (300)
+.+...+.|..+ +++|||||=|.- |. . .+.+|+.+++.+ ++||..=
T Consensus 36 ~~~~a~~~a~~~------------------v~~GAdiIDIGgestrPga~~v~~~eE~~rv~pvi~~l~~~~-~~piSID 96 (282)
T 1aj0_A 36 SLIDAVKHANLM------------------INAGATIIDVGGESTRPGAAEVSVEEELQRVIPVVEAIAQRF-EVWISVD 96 (282)
T ss_dssp HHHHHHHHHHHH------------------HHHTCSEEEEESSCCSTTCCCCCHHHHHHHHHHHHHHHHHHC-CCEEEEE
T ss_pred CHHHHHHHHHHH------------------HHCCCCEEEECCCcCCCCCCcCCHHHHHHHHHHHHHHHHhhc-CCeEEEe
Q ss_pred ecccccHHHHHHHhCCC
Q psy15126 246 QVSGEYAMLAFAAQAGA 262 (300)
Q Consensus 246 ~vSgeY~~~r~Aa~~~~ 262 (300)
|-.-.-.++|.+.|.
T Consensus 97 --T~~~~va~aAl~aGa 111 (282)
T 1aj0_A 97 --TSKPEVIRESAKVGA 111 (282)
T ss_dssp --CCCHHHHHHHHHTTC
T ss_pred --CCCHHHHHHHHHcCC
No 447
>2qiw_A PEP phosphonomutase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: P6G; 1.80A {Corynebacterium glutamicum atcc 13032}
Probab=21.57 E-value=44 Score=30.08 Aligned_cols=39 Identities=18% Similarity=0.296 Sum_probs=29.0
Q ss_pred HHhHHHHHHHHHHHHHcCCCccccCCCCc-chHHHHHHHH
Q psy15126 61 EKTLKRLADISKAFSDAGAHIVAPSDMMD-NRIHAIKQSL 99 (300)
Q Consensus 61 d~Tl~~l~~~A~~~A~aGad~vAPSdmMD-grv~air~aL 99 (300)
...++.+.+.|..+.+||||+|-+-..-+ ..+..+.++|
T Consensus 164 ~~~~~~ai~ra~a~~eAGAd~i~~e~~~~~~~~~~i~~~~ 203 (255)
T 2qiw_A 164 EDPMVEAIKRIKLMEQAGARSVYPVGLSTAEQVERLVDAV 203 (255)
T ss_dssp SSHHHHHHHHHHHHHHHTCSEEEECCCCSHHHHHHHHTTC
T ss_pred hHHHHHHHHHHHHHHHcCCcEEEEcCCCCHHHHHHHHHhC
Confidence 35689999999999999999998855543 4455555444
No 448
>3bw2_A 2-nitropropane dioxygenase; TIM barrel, oxidoreductase; HET: FMN; 2.10A {Streptomyces ansochromogenes} PDB: 3bw4_A* 3bw3_A*
Probab=21.26 E-value=2.2e+02 Score=25.94 Aligned_cols=34 Identities=18% Similarity=0.355 Sum_probs=24.8
Q ss_pred hhcCCceeec-cCc------------------chHHHHHHHHHhhCCCCCEEeE
Q psy15126 211 VSQGADFLMV-KPA------------------LPYLDIISEVKSRHPAYPLFVY 245 (300)
Q Consensus 211 a~~GADivmV-kPs------------------mm~ld~Ir~~~d~~~~vpi~aY 245 (300)
.+.|+|+|.| .|. ...+..++++++.. ++||++=
T Consensus 162 ~~~GaD~i~v~g~~~GGh~g~~~~~~~~~~~~~~~~~~l~~i~~~~-~iPViaa 214 (369)
T 3bw2_A 162 EAAGADAVIAQGVEAGGHQGTHRDSSEDDGAGIGLLSLLAQVREAV-DIPVVAA 214 (369)
T ss_dssp HHTTCSEEEEECTTCSEECCCSSCCGGGTTCCCCHHHHHHHHHHHC-SSCEEEE
T ss_pred HHcCCCEEEEeCCCcCCcCCCcccccccccccccHHHHHHHHHHhc-CceEEEE
Confidence 5789999988 431 12378888888875 7998765
No 449
>2nv1_A Pyridoxal biosynthesis lyase PDXS; (beta/alpha)8-barrel, synthase; 2.08A {Bacillus subtilis} PDB: 2nv2_A* 1znn_A
Probab=21.19 E-value=3.2e+02 Score=24.23 Aligned_cols=33 Identities=21% Similarity=0.240 Sum_probs=23.1
Q ss_pred hhcCCceee-ccC---------c--ch-HHHHHHHHHhhCCCCCEEe
Q psy15126 211 VSQGADFLM-VKP---------A--LP-YLDIISEVKSRHPAYPLFV 244 (300)
Q Consensus 211 a~~GADivm-VkP---------s--mm-~ld~Ir~~~d~~~~vpi~a 244 (300)
.++|||.|+ +-| + .+ ..+.|+++++.+ ++|++.
T Consensus 38 ~~~Ga~~I~~l~p~~~~~~~~~G~~~~~~~~~i~~I~~~~-~iPv~~ 83 (305)
T 2nv1_A 38 EEAGAVAVMALERVPADIRAAGGVARMADPTIVEEVMNAV-SIPVMA 83 (305)
T ss_dssp HHTTCSEEEECCC-------CCCCCCCCCHHHHHHHHHHC-SSCEEE
T ss_pred HHcCCCEEEEcCCCcchhhhccCcccCCCHHHHHHHHHhC-CCCEEe
Confidence 578999994 432 1 12 578888888776 799874
No 450
>4e16_A Precorrin-4 C(11)-methyltransferase; structural genomics, center for structural genomics of infec diseases, csgid; 2.49A {Clostridium difficile}
Probab=21.18 E-value=1.8e+02 Score=25.24 Aligned_cols=91 Identities=11% Similarity=0.073 Sum_probs=57.9
Q ss_pred cccCCCCCChHHHHHHHHHHhCCCcEEEeeecCCCCCCCCcceeeCCCCcee--cHHhHHHHHHHHHHHHHcCCCccccC
Q psy15126 8 ASFADTPDNPLFQVIPMIRKQFPSLTIACDVCLCGYTSHGHCAIFNEDGSIH--YEKTLKRLADISKAFSDAGAHIVAPS 85 (300)
Q Consensus 8 ~s~a~~~~~~~~~~i~~ik~~~p~l~i~~Dvclc~yt~hGHcgi~~~~g~i~--nd~Tl~~l~~~A~~~A~aGad~vAPS 85 (300)
|..--+|+.+..||++.|++. ++++..|- +++.-.-..+..+..+. ...+.+...+..+.+++.|=+++-.+
T Consensus 11 G~GpG~~~~lT~~A~~~L~~a--dvv~~~~~----~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~~V~~l~ 84 (253)
T 4e16_A 11 GAGPGDKELITLKGYKLLSNA--DVVIYAGS----LVNPELLEYCKEDCQIHNSAHMDLQEIIDVMREGIENNKSVVRLQ 84 (253)
T ss_dssp ECBSSCGGGSCHHHHHHHHHC--SEEEECTT----TSCGGGGGGSCTTCEEEEGGGCCHHHHHHHHHHHHHTTCCEEEEE
T ss_pred eCCCCCHHHHHHHHHHHHHhC--CEEEEeCC----CCCHHHHhhcCCCCEEEecCCCCHHHHHHHHHHHHHCCCcEEEEe
Confidence 444567888999999999997 45554342 22111111122222222 23466788888888999998877663
Q ss_pred ---CCCcchHHHHHHHHhhCCC
Q psy15126 86 ---DMMDNRIHAIKQSLFTSRQ 104 (300)
Q Consensus 86 ---dmMDgrv~air~aLd~~g~ 104 (300)
.+.-|+...+.+.|.+.|+
T Consensus 85 ~GDP~i~~~~~~l~~~l~~~gi 106 (253)
T 4e16_A 85 TGDFSIYGSIREQVEDLNKLNI 106 (253)
T ss_dssp SBCTTTTCCHHHHHHHHHHHTC
T ss_pred CCCCccccCHHHHHHHHHHCCC
Confidence 4455778888888888877
No 451
>1jfl_A Aspartate racemase; alpha-beta structure, HOMO-dimer, homologous domains, isomer; 1.90A {Pyrococcus horikoshii} SCOP: c.78.2.1 c.78.2.1 PDB: 2dx7_A* 1iu9_A
Probab=21.06 E-value=2.4e+02 Score=23.73 Aligned_cols=47 Identities=19% Similarity=0.131 Sum_probs=33.2
Q ss_pred CCCEEeEecccccHHHHHHHhCCCCCHHHHHHHHHHHHHHcCCCEEEe
Q psy15126 239 AYPLFVYQVSGEYAMLAFAAQAGALDLKRALMETLTCLRRGGADVIIS 286 (300)
Q Consensus 239 ~vpi~aY~vSgeY~~~r~Aa~~~~~n~~eal~E~~~~~~r~GAD~Ii~ 286 (300)
+.|...++..- +.-.-.+...+|-+..+.+.|....+.++|+|+|++
T Consensus 34 ~~~~~~~~~~~-i~~r~~~~~~~~~~~~~~l~~~~~~l~~~g~d~ivi 80 (228)
T 1jfl_A 34 HPKVIIFNNPQ-IPDRTAYILGKGEDPRPQLIWTAKRLEECGADFIIM 80 (228)
T ss_dssp SCCEEEEECTT-SCCHHHHHTTSSCCCHHHHHHHHHHHHHHTCSEEEC
T ss_pred cCcEeEEeCCC-HHHHHHHHHcCCchHHHHHHHHHHHHHHcCCCEEEE
Confidence 47888886532 222222223468888999999999998899999886
No 452
>1me8_A Inosine-5'-monophosphate dehydrogenase; alpha beta barrel, oxidoreductase; HET: RVP; 1.90A {Tritrichomonas foetus} SCOP: c.1.5.1 PDB: 1ak5_A* 1me7_A* 1me9_A* 1meh_A* 1mei_A* 1mew_A* 1pvn_A* 1lrt_A*
Probab=20.99 E-value=89 Score=30.19 Aligned_cols=57 Identities=23% Similarity=0.167 Sum_probs=37.2
Q ss_pred hhcCCceeeccCc----chHHHHHHHHHhhCCC-CCEEeEecccccHHHHHHHhCCCCCHHHHHHHHHHHHHHcCCCEEE
Q psy15126 211 VSQGADFLMVKPA----LPYLDIISEVKSRHPA-YPLFVYQVSGEYAMLAFAAQAGALDLKRALMETLTCLRRGGADVII 285 (300)
Q Consensus 211 a~~GADivmVkPs----mm~ld~Ir~~~d~~~~-vpi~aY~vSgeY~~~r~Aa~~~~~n~~eal~E~~~~~~r~GAD~Ii 285 (300)
.++|+++|.|-.+ ...++.|+.+++.+++ +|+++-.+ .+. |....+.++|||+|.
T Consensus 251 ~e~gv~~l~Vd~~~g~~~~~~~~i~~lk~~~~~~~~Vi~G~V---------------~t~-----~~a~~l~~aGad~I~ 310 (503)
T 1me8_A 251 VEAGADVLCIDSSDGFSEWQKITIGWIREKYGDKVKVGAGNI---------------VDG-----EGFRYLADAGADFIK 310 (503)
T ss_dssp HHHTCSEEEECCSCCCSHHHHHHHHHHHHHHGGGSCEEEEEE---------------CSH-----HHHHHHHHHTCSEEE
T ss_pred HhhhccceEEecccCcccchhhHHHHHHHhCCCCceEeeccc---------------cCH-----HHHHHHHHhCCCeEE
Confidence 5668998877333 1257777777777777 89987655 232 222334478999997
Q ss_pred ec
Q psy15126 286 SY 287 (300)
Q Consensus 286 ~y 287 (300)
+-
T Consensus 311 Vg 312 (503)
T 1me8_A 311 IG 312 (503)
T ss_dssp EC
T ss_pred ec
Confidence 63
No 453
>2gzm_A Glutamate racemase; enzyme, isomerase; HET: DGL; 1.99A {Bacillus anthracis}
Probab=20.92 E-value=2.9e+02 Score=24.09 Aligned_cols=28 Identities=25% Similarity=0.323 Sum_probs=21.0
Q ss_pred CCCCC---HHHHHHHHHHHHHHcCCCEEEec
Q psy15126 260 AGALD---LKRALMETLTCLRRGGADVIISY 287 (300)
Q Consensus 260 ~~~~n---~~eal~E~~~~~~r~GAD~Ii~y 287 (300)
.|..+ .++.+.|.+..+++.|+|.|+.-
T Consensus 153 ~g~~~~~~~~~~l~~~~~~l~~~~~d~iVLG 183 (267)
T 2gzm_A 153 SGNFESEMAYEVVRETLQPLKNTDIDTLILG 183 (267)
T ss_dssp TTCSSSHHHHHHHHHHHHHHHHSCCSEEEEC
T ss_pred CCCCCCHHHHHHHHHHHHHHHhcCCCEEEEc
Confidence 46665 36778888888877899998853
No 454
>3ldv_A Orotidine 5'-phosphate decarboxylase; structural genomics, infectious diseases; 1.77A {Vibrio cholerae o1 biovar el tor} PDB: 3uwq_A*
Probab=20.80 E-value=3e+02 Score=24.70 Aligned_cols=106 Identities=18% Similarity=0.113 Sum_probs=57.1
Q ss_pred hHHHHHHH-HHhhhcccccCCCCCccc-cchhhhcCCceeeccCcch--HHHHHHHHHhhC-CCCC-EE-eEec-ccccH
Q psy15126 181 TLKRLADI-SKAFSDAVYVPNHNTDRF-QARDVSQGADFLMVKPALP--YLDIISEVKSRH-PAYP-LF-VYQV-SGEYA 252 (300)
Q Consensus 181 tl~~l~~~-a~~~a~~~~~~~~n~~~~-~~~Da~~GADivmVkPsmm--~ld~Ir~~~d~~-~~vp-i~-aY~v-SgeY~ 252 (300)
.++.|.+. -..++|.=.-|..||-.- ...=.+.|||+|.|-|.+- .+...++..+.+ .+.| +. .... |-.=.
T Consensus 70 ~v~~Lk~~g~~VflDlK~~DIpnTv~~a~~~~~~~gaD~vTVh~~~G~~~~~~a~~~~~~~g~~~~~li~VtvLTS~s~~ 149 (255)
T 3ldv_A 70 FVRELHKRGFSVFLDLKFHDIPNTCSKAVKAAAELGVWMVNVHASGGERMMAASREILEPYGKERPLLIGVTVLTSMESA 149 (255)
T ss_dssp HHHHHHHTTCCEEEEEEECSCHHHHHHHHHHHHHTTCSEEEEEGGGCHHHHHHHHHHHGGGGGGSCEEEEECSCTTCCHH
T ss_pred HHHHHHhcCCCEEEEEecccchhHHHHHHHHHHhcCCCEEEEeccCCHHHHHHHHHHHhhcCCCCceEEEEEEEecCCHH
Confidence 34444443 234556666666676432 2223568999999999843 455555555433 1122 22 2222 11111
Q ss_pred HHHHHHhCCC-CCHHHHHHHHHHHHHHcCCCEEEecch
Q psy15126 253 MLAFAAQAGA-LDLKRALMETLTCLRRGGADVIISYYT 289 (300)
Q Consensus 253 ~~r~Aa~~~~-~n~~eal~E~~~~~~r~GAD~Ii~y~A 289 (300)
-++ +.|+ ....+.+.+....-+++|.|-+++-+.
T Consensus 150 ~l~---~~g~~~~~~~~V~~~A~~a~~aG~~GvV~sa~ 184 (255)
T 3ldv_A 150 DLQ---GIGILSAPQDHVLRLATLTKNAGLDGVVCSAQ 184 (255)
T ss_dssp HHH---HTTCCSCHHHHHHHHHHHHHHTTCSEEECCHH
T ss_pred HHH---hcCCCCCHHHHHHHHHHHHHHcCCCEEEECHH
Confidence 232 3444 244667777666666679999887643
No 455
>1a2o_A CHEB methylesterase; bacterial chemotaxis, adaptation, serine hydrolase; 2.40A {Salmonella typhimurium} SCOP: c.23.1.1 c.40.1.1
Probab=20.78 E-value=2.9e+02 Score=25.10 Aligned_cols=59 Identities=19% Similarity=0.182 Sum_probs=37.5
Q ss_pred cCCceeeccCc---chHHHHHHHHHhhCCCCCEEeEecccccHHHHHHHhCCCCCHHHHHHHHHHHHHHcCCCEEEecch
Q psy15126 213 QGADFLMVKPA---LPYLDIISEVKSRHPAYPLFVYQVSGEYAMLAFAAQAGALDLKRALMETLTCLRRGGADVIISYYT 289 (300)
Q Consensus 213 ~GADivmVkPs---mm~ld~Ir~~~d~~~~vpi~aY~vSgeY~~~r~Aa~~~~~n~~eal~E~~~~~~r~GAD~Ii~y~A 289 (300)
.-.|+|++--. |.-++.++++++.++ +||+..+..... ........+ +.||+-.+.||.
T Consensus 48 ~~pDlVllDi~mp~~dGlell~~l~~~~p-~pVIvlS~~~~~----------------~~~~~~~al-~~Ga~d~l~KP~ 109 (349)
T 1a2o_A 48 FNPDVLTLDVEMPRMDGLDFLEKLMRLRP-MPVVMVSSLTGK----------------GSEVTLRAL-ELGAIDFVTKPQ 109 (349)
T ss_dssp HCCSEEEEECCCSSSCHHHHHHHHHHSSC-CCEEEEECCTHH----------------HHHHHHHHH-HHTCCEEEECSS
T ss_pred cCCCEEEEECCCCCCCHHHHHHHHHhcCC-CcEEEEECCCcc----------------cHHHHHHHH-hCCceEEEECCC
Confidence 45788877644 446889999988876 999988642211 111122233 578888888875
No 456
>3bre_A Probable two-component response regulator; protein-nucleotide complex, signaling protein; HET: C2E; 2.40A {Pseudomonas aeruginosa} PDB: 3i5a_A*
Probab=20.69 E-value=93 Score=27.04 Aligned_cols=50 Identities=14% Similarity=0.212 Sum_probs=32.9
Q ss_pred hcCCceeeccCcc---hHHHHHHHHHhh--CCCCCEEeEecccccHHHHHHHhCC
Q psy15126 212 SQGADFLMVKPAL---PYLDIISEVKSR--HPAYPLFVYQVSGEYAMLAFAAQAG 261 (300)
Q Consensus 212 ~~GADivmVkPsm---m~ld~Ir~~~d~--~~~vpi~aY~vSgeY~~~r~Aa~~~ 261 (300)
+...|+|++--.| --++.++++++. ++++||+..+..........|.+.|
T Consensus 61 ~~~~dlvl~D~~mp~~~G~~~~~~l~~~~~~~~~~ii~~s~~~~~~~~~~a~~~G 115 (358)
T 3bre_A 61 QIKPTVILQDLVMPGVDGLTLLAAYRGNPATRDIPIIVLSTKEEPTVKSAAFAAG 115 (358)
T ss_dssp HHCCSEEEEESBCSSSBHHHHHHHHTTSTTTTTSCEEEEESSCCHHHHHHHHHTT
T ss_pred hCCCCEEEEeCCCCCCCHHHHHHHHhcCcccCCCcEEEEeCCCCHHHHHHHHhcC
Confidence 3457888776444 467889988865 5789999987654444444444443
No 457
>3nbm_A PTS system, lactose-specific IIBC components; PTS_IIB_LACTOSE, phosphoenolpyruvate:carbohydrate system, P- phosphorylation; HET: MSE; 1.30A {Streptococcus pneumoniae}
Probab=20.30 E-value=92 Score=24.47 Aligned_cols=41 Identities=15% Similarity=0.260 Sum_probs=30.8
Q ss_pred hhcCCceeeccCcc-hHHHHHHHHHhhCCCCCEEeEecccccHH
Q psy15126 211 VSQGADFLMVKPAL-PYLDIISEVKSRHPAYPLFVYQVSGEYAM 253 (300)
Q Consensus 211 a~~GADivmVkPsm-m~ld~Ir~~~d~~~~vpi~aY~vSgeY~~ 253 (300)
.....|+|++.|-. .+++-+++..+.+ ++||..=. .-.||+
T Consensus 50 ~~~~~DvvLLgPQV~y~~~~ik~~~~~~-~ipV~vI~-~~~Yg~ 91 (108)
T 3nbm_A 50 IMGVYDLIILAPQVRSYYREMKVDAERL-GIQIVATR-GMEYIH 91 (108)
T ss_dssp TGGGCSEEEECGGGGGGHHHHHHHHTTT-TCEEEECC-HHHHHH
T ss_pred hccCCCEEEEChHHHHHHHHHHHHhhhc-CCcEEEeC-HHHhhh
Confidence 44668999999994 4788898888765 78887643 466764
No 458
>4g9p_A 4-hydroxy-3-methylbut-2-EN-1-YL diphosphate synth; oxidoreductase, isoprenoid biosynthesis, non mevalonate PATH iron-sulphur-cluster; HET: CDI MES; 1.55A {Thermus thermophilus} PDB: 2y0f_A*
Probab=20.29 E-value=62 Score=31.74 Aligned_cols=46 Identities=17% Similarity=0.191 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHHcCCCccccCCC-C--cchHHHHHHHHhhCCCCCCcccc
Q psy15126 64 LKRLADISKAFSDAGAHIVAPSDM-M--DNRIHAIKQSLFTSRQSSTTGLL 111 (300)
Q Consensus 64 l~~l~~~A~~~A~aGad~vAPSdm-M--Dgrv~air~aLd~~g~~~~v~Im 111 (300)
++..++|...++++|+++|-.+-. | -.-+..||+.|...|. +++|+
T Consensus 37 v~aTv~QI~~L~~aG~eiVRvaVp~~~~A~al~~I~~~l~~~~~--~vPLV 85 (406)
T 4g9p_A 37 VEATTAQVLELHRAGSEIVRLTVNDEEAAKAVPEIKRRLLAEGV--EVPLV 85 (406)
T ss_dssp HHHHHHHHHHHHHHTCSEEEEECCSHHHHHHHHHHHHHHHHTTC--CCCEE
T ss_pred HHHHHHHHHHHHHcCCCEEEEecCCHHHHHhHHHHHHHHHhcCC--CCceE
Confidence 344566778899999999987322 2 1346788999999998 57776
No 459
>3out_A Glutamate racemase; structural genomics, center for structural genomics of infec diseases, csgid, MURI, cell envelope; HET: MSE DGL; 1.65A {Francisella tularensis subsp}
Probab=20.25 E-value=1.9e+02 Score=25.80 Aligned_cols=90 Identities=13% Similarity=0.164 Sum_probs=58.7
Q ss_pred HHHHHHHhCCC--cEEEeeecCCCCCCCCcceeeCCCCceecHHhHHHHHHHHHHHHHcCCCccccCC-CCcc-hHHHHH
Q psy15126 21 VIPMIRKQFPS--LTIACDVCLCGYTSHGHCAIFNEDGSIHYEKTLKRLADISKAFSDAGAHIVAPSD-MMDN-RIHAIK 96 (300)
Q Consensus 21 ~i~~ik~~~p~--l~i~~Dvclc~yt~hGHcgi~~~~g~i~nd~Tl~~l~~~A~~~A~aGad~vAPSd-mMDg-rv~air 96 (300)
..+.|++..|+ +.-.+|-.-.||- .=..+.-.+.+.+.+..+.+.|+++|.... .+.- -...+|
T Consensus 22 v~~~i~~~lp~~~~iy~~D~a~~PYG------------~~~~~~i~~~~~~~~~~L~~~g~~~iVIACNTa~~~al~~lr 89 (268)
T 3out_A 22 IVKNLMSILPNEDIIYFGDIARIPYG------------TKSRATIQKFAAQTAKFLIDQEVKAIIIACNTISAIAKDIVQ 89 (268)
T ss_dssp HHHHHHHHCTTCCEEEEECTTTCCCT------------TSCHHHHHHHHHHHHHHHHHTTCSEEEECCHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCCcEEEecCCCCCCCC------------CCCHHHHHHHHHHHHHHHHHCCCCEEEEeCCChHHHHHHHHH
Confidence 57889999994 7788999999993 234556667777888888899999887621 1111 224455
Q ss_pred HHH-h-------------hCCCCCCcccccchhhhhcccch
Q psy15126 97 QSL-F-------------TSRQSSTTGLLSYSAKFCSAFYG 123 (300)
Q Consensus 97 ~aL-d-------------~~g~~~~v~ImsysaK~aS~~YG 123 (300)
+.+ + ..+. .+++||+=.+--.|.+|-
T Consensus 90 ~~~~~iPvigiiep~~~~~~~~-~~IGVLaT~~Ti~s~~y~ 129 (268)
T 3out_A 90 EIAKAIPVIDVITAGVSLVDNL-NTVGVIATPATINSNAYA 129 (268)
T ss_dssp HHHTTSCEEEHHHHHHHTTTTC-SEEEEEECHHHHHHTHHH
T ss_pred HhcCCCCEEeccHHHHHHhccC-CeEEEEecCcccccHHHH
Confidence 544 1 1233 457777666666666664
No 460
>3ndo_A Deoxyribose-phosphate aldolase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ALS collaborative crystallography; HET: GOL; 1.25A {Mycobacterium smegmatis} PDB: 3ng3_A
Probab=20.10 E-value=4.6e+02 Score=23.28 Aligned_cols=78 Identities=18% Similarity=0.144 Sum_probs=0.0
Q ss_pred chHhHHHHHHHHHhhhcccccCCCCCccccchhhhcCCceeeccCc---c-h---HHHHHHHHHhh-CCCCCEEeEeccc
Q psy15126 178 YEKTLKRLADISKAFSDAVYVPNHNTDRFQARDVSQGADFLMVKPA---L-P---YLDIISEVKSR-HPAYPLFVYQVSG 249 (300)
Q Consensus 178 nd~tl~~l~~~a~~~a~~~~~~~~n~~~~~~~Da~~GADivmVkPs---m-m---~ld~Ir~~~d~-~~~vpi~aY~vSg 249 (300)
+..|-+.+.+.+..- .++|||+| |-| . . .+..++..++. -+.+||-+-.
T Consensus 141 ~~~t~eei~~a~~ia------------------~~aGADfV--KTSTGf~~~~gAt~edv~lm~~~v~~~v~VKaaG--- 197 (231)
T 3ndo_A 141 EFSGEPLLADVCRVA------------------RDAGADFV--KTSTGFHPSGGASVQAVEIMARTVGERLGVKASG--- 197 (231)
T ss_dssp HHTCHHHHHHHHHHH------------------HHTTCSEE--ECCCSCCTTCSCCHHHHHHHHHHHTTTSEEEEES---
T ss_pred CCCCHHHHHHHHHHH------------------HHHCcCEE--EcCCCCCCCCCCCHHHHHHHHHHhCCCceEEEeC---
Q ss_pred ccHHHHHHHhCCCCCHHHHHHHHHHHHHHcCCCEEEecchHHHHH
Q psy15126 250 EYAMLAFAAQAGALDLKRALMETLTCLRRGGADVIISYYTPRVLE 294 (300)
Q Consensus 250 eY~~~r~Aa~~~~~n~~eal~E~~~~~~r~GAD~Ii~y~A~~~ld 294 (300)
|+.+.++++ .+.++||+-|=|..+..+++
T Consensus 198 -----------GIrt~~~a~-----~~i~aGa~RiGtS~g~~I~~ 226 (231)
T 3ndo_A 198 -----------GIRTAEQAA-----AMLDAGATRLGLSGSRAVLD 226 (231)
T ss_dssp -----------SCCSHHHHH-----HHHHTTCSEEEESSHHHHHH
T ss_pred -----------CCCCHHHHH-----HHHHhcchhcccchHHHHHh
No 461
>2oho_A Glutamate racemase; isomerase; 2.25A {Streptococcus pyogenes m1 gas} PDB: 2ohg_A 2ohv_A*
Probab=20.10 E-value=1.6e+02 Score=25.89 Aligned_cols=56 Identities=11% Similarity=0.134 Sum_probs=40.0
Q ss_pred ChHHHHHHHHHHhCCC--cEEEeeecCCCCCCCCcceeeCCCCceecHHhHHHHHHHHHHHHHcCCCcccc
Q psy15126 16 NPLFQVIPMIRKQFPS--LTIACDVCLCGYTSHGHCAIFNEDGSIHYEKTLKRLADISKAFSDAGAHIVAP 84 (300)
Q Consensus 16 ~~~~~~i~~ik~~~p~--l~i~~Dvclc~yt~hGHcgi~~~~g~i~nd~Tl~~l~~~A~~~A~aGad~vAP 84 (300)
|.+. ..+.|++..|+ ++-.+|....||-.. ..+.-.+.+.+.+..+.+.|++.|..
T Consensus 23 Gglt-v~~~i~~~~P~~~~iy~~D~~~~Pyg~~------------s~~~i~~~~~~~~~~L~~~g~d~ivi 80 (273)
T 2oho_A 23 GGLT-VVCELIRQLPHEKIVYIGDSARAPYGPR------------PKKQIKEYTWELVNFLLTQNVKMIVF 80 (273)
T ss_dssp TTHH-HHHHHHHHCTTCCEEEEECGGGCCCTTS------------CHHHHHHHHHHHHHHHHTTTCSEEEE
T ss_pred cHHH-HHHHHHHHCCCCCEEEEeCCCCCCCCCC------------CHHHHHHHHHHHHHHHHHCCCCEEEE
Confidence 4443 88999999996 556689988888321 22445666777777778889998876
No 462
>1vd6_A Glycerophosphoryl diester phosphodiesterase; glycerophosphod phosphodiesterase, HB8; 1.30A {Thermus thermophilus} SCOP: c.1.18.3 PDB: 1v8e_A
Probab=20.06 E-value=1.4e+02 Score=25.22 Aligned_cols=59 Identities=17% Similarity=0.193 Sum_probs=39.0
Q ss_pred hcCCceeeccCc--chHHHHHHHHHhhCCCCCEEeEecccccHHHHHHHhCCCCCHHHHHHHHHHHHHHcCCCEEEecch
Q psy15126 212 SQGADFLMVKPA--LPYLDIISEVKSRHPAYPLFVYQVSGEYAMLAFAAQAGALDLKRALMETLTCLRRGGADVIISYYT 289 (300)
Q Consensus 212 ~~GADivmVkPs--mm~ld~Ir~~~d~~~~vpi~aY~vSgeY~~~r~Aa~~~~~n~~eal~E~~~~~~r~GAD~Ii~y~A 289 (300)
+.|++.+ .|. ...-+.++++++. ++++.+|.| |..+. +..+.+.|+|.|+|-+-
T Consensus 161 ~~~~~~i--~~~~~~~~~~~v~~~~~~--G~~v~~wtv----------------n~~~~----~~~l~~~GvdgI~TD~p 216 (224)
T 1vd6_A 161 CLGVEAV--HPHHALVTEEAVAGWRKR--GLFVVAWTV----------------NEEGE----ARRLLALGLDGLIGDRP 216 (224)
T ss_dssp GSCCSEE--EEBGGGCCHHHHHHHHHT--TCEEEEECC----------------CCHHH----HHHHHHTTCSEEEESCH
T ss_pred HcCCcEE--ecCcccCCHHHHHHHHHC--CCEEEEEeC----------------CCHHH----HHHHHhcCCCEEEcCCH
Confidence 4688888 555 2245677777774 689999977 43322 23334679999999875
Q ss_pred HHHHH
Q psy15126 290 PRVLE 294 (300)
Q Consensus 290 ~~~ld 294 (300)
....+
T Consensus 217 ~~~~~ 221 (224)
T 1vd6_A 217 EVLLP 221 (224)
T ss_dssp HHHTT
T ss_pred HHHHH
Confidence 54433
No 463
>3vzx_A Heptaprenylglyceryl phosphate synthase; biosynthesis, prenyltransferases, enzyme catalysis, transfer; 1.54A {Bacillus subtilis} PDB: 3vzy_A* 3vzz_A* 3w00_A* 1viz_A
Probab=20.03 E-value=89 Score=27.87 Aligned_cols=33 Identities=18% Similarity=0.302 Sum_probs=24.8
Q ss_pred hhcCCceeeccCcc-h----HHHHHHHHHhhCCCCCEEeE
Q psy15126 211 VSQGADFLMVKPAL-P----YLDIISEVKSRHPAYPLFVY 245 (300)
Q Consensus 211 a~~GADivmVkPsm-m----~ld~Ir~~~d~~~~vpi~aY 245 (300)
.+.|+|.|||.=|. . .++.++++++ + ++|+.-.
T Consensus 28 ~~~GtD~i~vGGs~gvt~~~~~~~v~~ik~-~-~~Pvvlf 65 (228)
T 3vzx_A 28 CESGTDAVIIGGSDGVTEDNVLRMMSKVRR-F-LVPCVLE 65 (228)
T ss_dssp HTSSCSEEEECCCSCCCHHHHHHHHHHHTT-S-SSCEEEE
T ss_pred HHcCCCEEEECCcCCCCHHHHHHHHHHhhc-c-CCCEEEe
Confidence 58999999999984 3 5677777776 4 6887543
Done!