RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy15126
(300 letters)
>d1pv8a_ c.1.10.3 (A:) 5-aminolaevulinate dehydratase, ALAD
(porphobilinogen synthase) {Human (Homo sapiens) [TaxId:
9606]}
Length = 320
Score = 213 bits (543), Expect = 3e-68
Identities = 138/299 (46%), Positives = 186/299 (62%), Gaps = 52/299 (17%)
Query: 1 MDLRDETASFADTPDNPLFQVIPMIRKQFPSLTIACDVCLCGYTSHGHCAIFNEDGSIHY 60
+DE S AD+ ++P + I ++RK FP+L +ACDVCLC YTSHGHC + +E+G+
Sbjct: 74 RVPKDERGSAADSEESPAIEAIHLLRKTFPNLLVACDVCLCPYTSHGHCGLLSENGAFRA 133
Query: 61 EKTLKRLADISKAFSDAGAHIVAPSDMMDNRIHAIKQSLFTSRQSSTTGLLSYSAKFCSA 120
E++ +RLA+++ A++ AG +VAPSDMMD R+ AIK++L + ++SYSAKF S
Sbjct: 134 EESRQRLAEVALAYAKAGCQVVAPSDMMDGRVEAIKEALMAHGLGNRVSVMSYSAKFASC 193
Query: 121 FYGPFREAAGSAPTFGDRSCYQLPCGSKGLAIRAAVCLCGYTSHGHCAIFNEDGSIHYEK 180
FYGPFR+AA S+P FGDR CYQLP G++GLA+RA
Sbjct: 194 FYGPFRDAAKSSPAFGDRRCYQLPPGARGLALRAV------------------------- 228
Query: 181 TLKRLADISKAFSDAVYVPNHNTDRFQARDVSQGADFLMVKPALPYLDIISEVKSRHPAY 240
RDV +GAD LMVKP +PYLDI+ EVK +HP
Sbjct: 229 ---------------------------DRDVREGADMLMVKPGMPYLDIVREVKDKHPDL 261
Query: 241 PLFVYQVSGEYAMLAFAAQAGALDLKRALMETLTCLRRGGADVIISYYTPRVLEWLRED 299
PL VY VSGE+AML AQAGA DLK A++E +T RR GAD+II+YYTP++L+WL+E+
Sbjct: 262 PLAVYHVSGEFAMLWHGAQAGAFDLKAAVLEAMTAFRRAGADIIITYYTPQLLQWLKEE 320
>d2c1ha1 c.1.10.3 (A:10-328) 5-aminolaevulinate dehydratase, ALAD
(porphobilinogen synthase) {Prosthecochloris
vibrioformis [TaxId: 1098]}
Length = 319
Score = 209 bits (534), Expect = 7e-67
Identities = 103/297 (34%), Positives = 147/297 (49%), Gaps = 55/297 (18%)
Query: 1 MDLRDETASFADTPDNPLFQVIPMIRKQFPSLTIACDVCLCGYTSHGHCAIFNEDGSIHY 60
+ + E S A + L Q I I+K P L I DV L +T GH + +DG I
Sbjct: 78 PEQKTEDGSEAYNDNGILQQAIRAIKKAVPELCIMTDVALDPFTPFGHDGLV-KDGIILN 136
Query: 61 EKTLKRLADISKAFSDAGAHIVAPSDMMDNRIHAIKQSLFTSRQSSTTGLLSYSAKFCSA 120
++T++ L ++ + ++AGA V+PSDMMD RI AI++ S G+LSY+AK+ S+
Sbjct: 137 DETVEVLQKMAVSHAEAGADFVSPSDMMDGRIGAIRE-ALDETDHSDVGILSYAAKYASS 195
Query: 121 FYGPFREAAGSAPTFGDRSCYQLPCGSKGLAIRAAVCLCGYTSHGHCAIFNEDGSIHYEK 180
FYGPFR+A SAP FGD+S YQ+ + A++
Sbjct: 196 FYGPFRDALHSAPQFGDKSTYQMNPANTEEAMKEV------------------------- 230
Query: 181 TLKRLADISKAFSDAVYVPNHNTDRFQARDVSQGADFLMVKPALPYLDIISEVKSRHPAY 240
D+ +GAD +MVKP L YLDI+ K R
Sbjct: 231 ---------------------------ELDIVEGADIVMVKPGLAYLDIVWRTKERFD-V 262
Query: 241 PLFVYQVSGEYAMLAFAAQAGALDLKRALMETLTCLRRGGADVIISYYTPRVLEWLR 297
P+ +Y VSGEYAM+ AA G +D R +ME+L C++R GAD+I +YY + LR
Sbjct: 263 PVAIYHVSGEYAMVKAAAAKGWIDEDRVMMESLLCMKRAGADIIFTYYAKEAAKKLR 319
>d1h7na_ c.1.10.3 (A:) 5-aminolaevulinate dehydratase, ALAD
(porphobilinogen synthase) {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 340
Score = 207 bits (527), Expect = 1e-65
Identities = 120/297 (40%), Positives = 158/297 (53%), Gaps = 52/297 (17%)
Query: 2 DLRDETASFADTPDNPLFQVIPMIRKQFPSLTIACDVCLCGYTSHGHCAIFNEDGSIHYE 61
+D + AD P P+ Q I IR+ FP L I CDVCLC YTSHGHC + +DG+I+ E
Sbjct: 96 GTKDPVGTAADDPAGPVIQGIKFIREYFPELYIICDVCLCEYTSHGHCGVLYDDGTINRE 155
Query: 62 KTLKRLADISKAFSDAGAHIVAPSDMMDNRIHAIKQSLFTSRQSSTTGLLSYSAKFCSAF 121
+++ RLA ++ ++ AGAH VAPSDM+D RI IK+ L + + T +LSY+AKF
Sbjct: 156 RSVSRLAAVAVNYAKAGAHCVAPSDMIDGRIRDIKRGLINANLAHKTFVLSYAAKFSGNL 215
Query: 122 YGPFREAAGSAPTFGDRSCYQLPCGSKGLAIRAAVCLCGYTSHGHCAIFNEDGSIHYEKT 181
YGPFR+AA SAP+ GDR CYQLP +GLA RA
Sbjct: 216 YGPFRDAACSAPSNGDRKCYQLPPAGRGLARRAL-------------------------- 249
Query: 182 LKRLADISKAFSDAVYVPNHNTDRFQARDVSQGADFLMVKPALPYLDIISEVKSRHPAYP 241
RD+S+GAD ++VKP+ YLDI+ + P
Sbjct: 250 --------------------------ERDMSEGADGIIVKPSTFYLDIMRDASEICKDLP 283
Query: 242 LFVYQVSGEYAMLAFAAQAGALDLKRALMETLTCLRRGGADVIISYYTPRVLEWLRE 298
+ Y VSGEYAML AA+ G +DLK E+ R GA +II+Y P L+WL E
Sbjct: 284 ICAYHVSGEYAMLHAAAEKGVVDLKTIAFESHQGFLRAGARLIITYLAPEFLDWLDE 340
>d1gzga_ c.1.10.3 (A:) 5-aminolaevulinate dehydratase, ALAD
(porphobilinogen synthase) {Pseudomonas aeruginosa
[TaxId: 287]}
Length = 329
Score = 205 bits (522), Expect = 5e-65
Identities = 97/296 (32%), Positives = 148/296 (50%), Gaps = 57/296 (19%)
Query: 4 RDETASFADTPDNPLFQVIPMIRKQFPSLTIACDVCLCGYTSHGHCAIFNEDGSIHYEKT 63
+ A+ A P+ + +R++FP L I DV L +T+HG I ++DG + + +
Sbjct: 88 KSLDAAEAYNPEGIAQRATRALRERFPELGIITDVALDPFTTHGQNGILDDDGYVLNDVS 147
Query: 64 LKRLADISKAFSDAGAHIVAPSDMMDNRIHAIKQSLFTSRQSSTTGLLSYSAKFCSAFYG 123
+ L + + ++AGA +VAPSDMMD RI AI+++ S + +++YSAK+ SA+YG
Sbjct: 148 IDVLVRQALSHAEAGAQVVAPSDMMDGRIGAIREA-LESAGHTNVRVMAYSAKYASAYYG 206
Query: 124 PFREAAGSAPTF--GDRSCYQLPCGSKGLAIRAAVCLCGYTSHGHCAIFNEDGSIHYEKT 181
PFR+A GSA G+++ YQ+ + A+
Sbjct: 207 PFRDAVGSASNLGKGNKATYQMDPANSDEALHEV-------------------------- 240
Query: 182 LKRLADISKAFSDAVYVPNHNTDRFQARDVSQGADFLMVKPALPYLDIISEVKSRHPAYP 241
A D+++GAD +MVKP +PYLDI+ VK P
Sbjct: 241 --------------------------AADLAEGADMVMVKPGMPYLDIVRRVKDEFR-AP 273
Query: 242 LFVYQVSGEYAMLAFAAQAGALDLKRALMETLTCLRRGGADVIISYYTPRVLEWLR 297
FVYQVSGEYAM A Q G L + ++E+LT +R GAD I++Y+ + E LR
Sbjct: 274 TFVYQVSGEYAMHMGAIQNGWLA-ESVILESLTAFKRAGADGILTYFAKQAAEQLR 328
>d1l6sa_ c.1.10.3 (A:) 5-aminolaevulinate dehydratase, ALAD
(porphobilinogen synthase) {Escherichia coli [TaxId:
562]}
Length = 323
Score = 194 bits (494), Expect = 6e-61
Identities = 106/296 (35%), Positives = 149/296 (50%), Gaps = 58/296 (19%)
Query: 4 RDETASFADTPDNPLFQVIPMIRKQFPSLTIACDVCLCGYTSHGHCAIFNEDGSIHYEKT 63
DET S A D + ++ + ++ P + + D C C YTSHGHC + E G + + T
Sbjct: 84 TDETGSDAWREDGLVARMSRICKQTVPEMIVMSDTCFCEYTSHGHCGVLCEHG-VDNDAT 142
Query: 64 LKRLADISKAFSDAGAHIVAPSDMMDNRIHAIKQSLFTSRQSSTTGLLSYSAKFCSAFYG 123
L+ L + + AGA +APS MD ++ AI+Q + T ++SYS KF S+FYG
Sbjct: 143 LENLGKQAVVAAAAGADFIAPSAAMDGQVQAIRQ-ALDAAGFKDTAIMSYSTKFASSFYG 201
Query: 124 PFREAAGSAPTFGDRSCYQLPCGSKGLAIRAAVCLCGYTSHGHCAIFNEDGSIHYEKTLK 183
PFREAAGSA GDR YQ+ ++ AIR +
Sbjct: 202 PFREAAGSAL-KGDRKSYQMNPMNRREAIRES---------------------------- 232
Query: 184 RLADISKAFSDAVYVPNHNTDRFQARDVSQGADFLMVKPALPYLDIISEVKSRHPAYPLF 243
D +QGAD LMVKPA YLDI+ E++ R P+
Sbjct: 233 ------------------------LLDEAQGADCLMVKPAGAYLDIVRELRERTE-LPIG 267
Query: 244 VYQVSGEYAMLAFAAQAGALDLKRALMETLTCLRRGGADVIISYYTPRVLE--WLR 297
YQVSGEYAM+ FAA AGA+D ++ ++E+L ++R GAD+I SY+ + E LR
Sbjct: 268 AYQVSGEYAMIKFAALAGAIDEEKVVLESLGSIKRAGADLIFSYFALDLAEKKILR 323
>d1ucda_ d.124.1.1 (A:) Ribonuclease MC1 {Bitter gourd (Momordica
charantia) [TaxId: 3673]}
Length = 190
Score = 28.9 bits (64), Expect = 0.56
Identities = 11/89 (12%), Positives = 29/89 (32%), Gaps = 4/89 (4%)
Query: 12 DTPDNPLFQVIPMIRKQFPSLTIACDVCL--CGYTSHGHCAIFNEDGSIHYEKT--LKRL 67
+ + + +P++ A + +T HG C+ + + +++ ++
Sbjct: 52 PFDITKISHLQSQLNTLWPNVLRANNQQFWSHEWTKHGTCSESTFNQAAYFKLAVDMRNN 111
Query: 68 ADISKAFSDAGAHIVAPSDMMDNRIHAIK 96
DI A A + +K
Sbjct: 112 YDIIGALRPHAAGPNGRTKSRQAIKGFLK 140
Score = 27.3 bits (60), Expect = 1.6
Identities = 11/49 (22%), Positives = 20/49 (40%), Gaps = 2/49 (4%)
Query: 161 YTSHGHCAIFNEDGSIHYEKT--LKRLADISKAFSDAVYVPNHNTDRFQ 207
+T HG C+ + + +++ ++ DI A PN T Q
Sbjct: 85 WTKHGTCSESTFNQAAYFKLAVDMRNNYDIIGALRPHAAGPNGRTKSRQ 133
>d1o60a_ c.1.10.4 (A:) 3-deoxy-D-manno-octulosonate 8-phosphate
synthase (KDO8P synthase) {Haemophilus influenzae
[TaxId: 727]}
Length = 281
Score = 27.7 bits (60), Expect = 1.8
Identities = 4/43 (9%), Positives = 15/43 (34%), Gaps = 2/43 (4%)
Query: 165 GHCAIFNEDGSIHYEKTLKRLADISKAFSDAVYVPNHNTDRFQ 207
G + + D ++ + ++ + K V+ + +
Sbjct: 23 GMNVLESRDMAMQVCEAYVKVTE--KLGVPYVFKASFDKANRS 63
>d1jb0a_ f.29.1.1 (A:) Apoprotein a1, PsaA {Synechococcus elongatus
[TaxId: 32046]}
Length = 743
Score = 27.5 bits (61), Expect = 2.3
Identities = 12/61 (19%), Positives = 21/61 (34%), Gaps = 7/61 (11%)
Query: 106 STTGLLSYSAKFCSAFYGPFREAAGSAPTFGDRSCYQLPCGSKGLAIRAAVCLCGYTSHG 165
G + + S + +R G + +QL C + G + A + L H
Sbjct: 116 GDVGGGFHGIQITSGLFQLWR-------ASGITNEFQLYCTAIGGLVMAGLMLFAGWFHY 168
Query: 166 H 166
H
Sbjct: 169 H 169
>d1iyba_ d.124.1.1 (A:) RNase NW {Nicotiana glutinosa [TaxId:
35889]}
Length = 208
Score = 26.3 bits (57), Expect = 4.7
Identities = 11/66 (16%), Positives = 23/66 (34%), Gaps = 3/66 (4%)
Query: 161 YTSHGHCAIFNEDGSIHYEKT--LKRLADISKAFSDAVYVPNHNTDRFQARDVSQGADFL 218
+ HG CA D +++K LK ++ + A P+ + + +
Sbjct: 98 WEKHGTCAENVFDQHGYFKKALDLKNQINLLEILQGAGIHPDGGFYSLNSI-KNAIRSAI 156
Query: 219 MVKPAL 224
P +
Sbjct: 157 GYAPGI 162
>d1slqa_ f.47.1.1 (A:) VP4 membrane interaction domain {Rhesus
rotavirus [TaxId: 10969]}
Length = 270
Score = 26.3 bits (58), Expect = 4.9
Identities = 13/53 (24%), Positives = 22/53 (41%), Gaps = 2/53 (3%)
Query: 187 DISKAFSDAVYVPNHNTDRFQARDVSQGADFLMVKPALPYLDIISEVKSRHPA 239
D S+AF + VYV + + + + G D+ P + + S H A
Sbjct: 105 DDSQAFRNMVYVRSLAAN-LNSV-ICTGGDYSFALPVGQWPVMTGGAVSLHSA 155
>d1jb0b_ f.29.1.1 (B:) Apoprotein a2, PsaB {Synechococcus elongatus
[TaxId: 32046]}
Length = 739
Score = 26.3 bits (58), Expect = 5.3
Identities = 10/33 (30%), Positives = 14/33 (42%)
Query: 134 TFGDRSCYQLPCGSKGLAIRAAVCLCGYTSHGH 166
T G R+ L G+ L I A++ L H
Sbjct: 125 TIGMRTNGDLYQGAIFLLILASLALFAGWLHLQ 157
>d1rh1a2 f.1.1.1 (A:313-511) Colicin B C-terminal domain
{Escherichia coli [TaxId: 562]}
Length = 199
Score = 25.9 bits (57), Expect = 5.8
Identities = 8/29 (27%), Positives = 12/29 (41%)
Query: 50 AIFNEDGSIHYEKTLKRLADISKAFSDAG 78
AI N + + E + A + K F A
Sbjct: 79 AIVNAWKAFNAEDMGNKFAALGKTFKAAD 107
>d2iela1 c.26.2.4 (A:2-135) Hypothetical protein TTC0031 {Thermus
thermophilus [TaxId: 274]}
Length = 134
Score = 25.3 bits (55), Expect = 6.8
Identities = 23/98 (23%), Positives = 36/98 (36%), Gaps = 5/98 (5%)
Query: 205 RFQARDVSQGADFLMVKPALPYLDIISEVKS-RHPAYPLFVYQVSGEYAMLAFAAQAGAL 263
A+D A F+++ PA+P + E R A A +A A
Sbjct: 22 ELLAQD--PEARFVLLVPAVPPPGWVYEENEVRRRAEEEAAAAKRALEAQGIPVEEAKAG 79
Query: 264 DLK--RALMETLTCLRRGGADVIISYYTPRVLEWLRED 299
D+ A+ E L +++S P + WLR D
Sbjct: 80 DISPLLAIEEELLAHPGAYQGIVLSTLPPGLSRWLRLD 117
>d2fzva1 c.23.5.4 (A:1-233) Putative arsenical resistance protein
{Shigella flexneri [TaxId: 623]}
Length = 233
Score = 25.5 bits (55), Expect = 8.2
Identities = 14/94 (14%), Positives = 23/94 (24%), Gaps = 14/94 (14%)
Query: 112 SYSAKFCSAFYGPFREAAGSAPTFGDRSCYQLPCGSKGLAIRAAVCLCGYTSHGHCAI-- 169
++ + E AG PT G G + A L
Sbjct: 113 QITSVMKAQIDHLPLEMAGIRPTQGRTLAVMQVSGGSQ-SFNAVNTLRLLGRWMRMFTIP 171
Query: 170 -----------FNEDGSIHYEKTLKRLADISKAF 192
F+ G + R+AD+ +
Sbjct: 172 NQSSIAKAFQEFDAAGRMKPSPYYDRIADVMEEL 205
>d1iooa_ d.124.1.1 (A:) Gemetophytic self-incompatibility associated
SF11-RNase {Winged tobacco (Nicotiana alata) [TaxId:
4087]}
Length = 196
Score = 25.1 bits (54), Expect = 9.1
Identities = 8/44 (18%), Positives = 16/44 (36%), Gaps = 2/44 (4%)
Query: 161 YTSHGHCAIFNEDGSIHYEKT--LKRLADISKAFSDAVYVPNHN 202
Y HG C + + ++ LK D+ + +P +
Sbjct: 88 YIKHGSCCQKRYNQNTYFGLALRLKDKFDLLRTLQTHRIIPGSS 131
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.323 0.136 0.416
Gapped
Lambda K H
0.267 0.0587 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,118,003
Number of extensions: 51235
Number of successful extensions: 327
Number of sequences better than 10.0: 1
Number of HSP's gapped: 317
Number of HSP's successfully gapped: 31
Length of query: 300
Length of database: 2,407,596
Length adjustment: 85
Effective length of query: 215
Effective length of database: 1,240,546
Effective search space: 266717390
Effective search space used: 266717390
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 53 (24.5 bits)