BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy15127
(633 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2VRA|A Chain A, Drosophila Robo Ig1-2 (Monoclinic Form)
pdb|2VRA|B Chain B, Drosophila Robo Ig1-2 (Monoclinic Form)
pdb|2VRA|C Chain C, Drosophila Robo Ig1-2 (Monoclinic Form)
pdb|2VRA|D Chain D, Drosophila Robo Ig1-2 (Monoclinic Form)
Length = 208
Score = 112 bits (280), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 69/155 (44%), Positives = 84/155 (54%), Gaps = 9/155 (5%)
Query: 72 PFPISEPSDATVLSGSVVEFVCRVGGDPLPTILWRRDDGKMPTGRAKI----LDDRSL-- 125
P I P+D V C+V G P PTI W +D + T K D +L
Sbjct: 10 PRIIEHPTDLVVKKNEPATLNCKVEGKPEPTIEWFKDGEPVSTNEKKSHRVQFKDGALFF 69
Query: 126 --QIENVGPQDEGLYICDVENLVG-SISLRASLTVHLLRDDFRAEPKDTRVASGETALLE 182
++ QD G Y C +N VG ++S ASL + +LRDDFR EPKDTRVA GETALLE
Sbjct: 70 YRTMQGKKEQDGGEYWCVAKNRVGQAVSRHASLQIAVLRDDFRVEPKDTRVAKGETALLE 129
Query: 183 CGPPKGQPEPTLHWKKNGQFIDLESSKSLDLSRRT 217
CGPPKG PEPTL W K+G +D + S S R
Sbjct: 130 CGPPKGIPEPTLIWIKDGVPLDDLKAMSFGASSRV 164
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 48/194 (24%), Positives = 80/194 (41%), Gaps = 29/194 (14%)
Query: 168 PKDTRVASGETALLECGPPKGQPEPTLHWKKNGQFIDLESSKSLDLSRRTLGWLRVRPL- 226
P D V E A L C +G+PEPT+ W K+G+ + KS + + R +
Sbjct: 16 PTDLVVKKNEPATLNC-KVEGKPEPTIEWFKDGEPVSTNEKKSHRVQFKDGALFFYRTMQ 74
Query: 227 ---------YWNVARPR-ANLNPRYIGRKMASLL--IWNHPRVNR--------LSCFA-E 265
YW VA+ R R+ ++A L P+ R L C +
Sbjct: 75 GKKEQDGGEYWCVAKNRVGQAVSRHASLQIAVLRDDFRVEPKDTRVAKGETALLECGPPK 134
Query: 266 GSPLPSVFWTQEGSQVLMFPGNAYG---HLHVTQEGTLRIQGVQKEDAGFFVCSALSVAG 322
G P P++ W ++G + ++G + + G L I V+ D G + C A ++ G
Sbjct: 135 GIPEPTLIWIKDGVPLDDLKAMSFGASSRVRIVDGGNLLISNVEPIDEGNYKCIAQNLVG 194
Query: 323 ---STTVRAFLQVR 333
S+ + +QV+
Sbjct: 195 TRESSYAKLIVQVK 208
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/82 (37%), Positives = 40/82 (48%), Gaps = 10/82 (12%)
Query: 77 EPSDATVLSGSVVEFVCRV-GGDPLPTILWRRD-----DGKM----PTGRAKILDDRSLQ 126
EP D V G C G P PT++W +D D K + R +I+D +L
Sbjct: 114 EPKDTRVAKGETALLECGPPKGIPEPTLIWIKDGVPLDDLKAMSFGASSRVRIVDGGNLL 173
Query: 127 IENVGPQDEGLYICDVENLVGS 148
I NV P DEG Y C +NLVG+
Sbjct: 174 ISNVEPIDEGNYKCIAQNLVGT 195
Score = 37.4 bits (85), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 33/114 (28%), Positives = 51/114 (44%), Gaps = 13/114 (11%)
Query: 238 NPRYIGRKMASLLIWNHPRVNRLSCFAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQE 297
+PR I ++ N P L+C EG P P++ W ++G V H ++
Sbjct: 9 SPRIIEHPTDLVVKKNEPAT--LNCKVEGKPEPTIEWFKDGEPVST--NEKKSHRVQFKD 64
Query: 298 GTL----RIQGVQKEDAGFFVCSALSVAGSTTVR-AFLQV----REFCVLPKGT 342
G L +QG +++D G + C A + G R A LQ+ +F V PK T
Sbjct: 65 GALFFYRTMQGKKEQDGGEYWCVAKNRVGQAVSRHASLQIAVLRDDFRVEPKDT 118
>pdb|2VR9|A Chain A, Drosophila Robo Ig1-2 (Tetragonal Form)
pdb|2VR9|B Chain B, Drosophila Robo Ig1-2 (Tetragonal Form)
pdb|2VR9|C Chain C, Drosophila Robo Ig1-2 (Tetragonal Form)
Length = 217
Score = 112 bits (280), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 69/155 (44%), Positives = 84/155 (54%), Gaps = 9/155 (5%)
Query: 72 PFPISEPSDATVLSGSVVEFVCRVGGDPLPTILWRRDDGKMPTGRAKI----LDDRSL-- 125
P I P+D V C+V G P PTI W +D + T K D +L
Sbjct: 10 PRIIEHPTDLVVKKNEPATLNCKVEGKPEPTIEWFKDGEPVSTNEKKSHRVQFKDGALFF 69
Query: 126 --QIENVGPQDEGLYICDVENLVG-SISLRASLTVHLLRDDFRAEPKDTRVASGETALLE 182
++ QD G Y C +N VG ++S ASL + +LRDDFR EPKDTRVA GETALLE
Sbjct: 70 YRTMQGKKEQDGGEYWCVAKNRVGQAVSRHASLQIAVLRDDFRVEPKDTRVAKGETALLE 129
Query: 183 CGPPKGQPEPTLHWKKNGQFIDLESSKSLDLSRRT 217
CGPPKG PEPTL W K+G +D + S S R
Sbjct: 130 CGPPKGIPEPTLIWIKDGVPLDDLKAMSFGASSRV 164
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 48/194 (24%), Positives = 80/194 (41%), Gaps = 29/194 (14%)
Query: 168 PKDTRVASGETALLECGPPKGQPEPTLHWKKNGQFIDLESSKSLDLSRRTLGWLRVRPL- 226
P D V E A L C +G+PEPT+ W K+G+ + KS + + R +
Sbjct: 16 PTDLVVKKNEPATLNC-KVEGKPEPTIEWFKDGEPVSTNEKKSHRVQFKDGALFFYRTMQ 74
Query: 227 ---------YWNVARPR-ANLNPRYIGRKMASLL--IWNHPRVNR--------LSCFA-E 265
YW VA+ R R+ ++A L P+ R L C +
Sbjct: 75 GKKEQDGGEYWCVAKNRVGQAVSRHASLQIAVLRDDFRVEPKDTRVAKGETALLECGPPK 134
Query: 266 GSPLPSVFWTQEGSQVLMFPGNAYG---HLHVTQEGTLRIQGVQKEDAGFFVCSALSVAG 322
G P P++ W ++G + ++G + + G L I V+ D G + C A ++ G
Sbjct: 135 GIPEPTLIWIKDGVPLDDLKAMSFGASSRVRIVDGGNLLISNVEPIDEGNYKCIAQNLVG 194
Query: 323 ---STTVRAFLQVR 333
S+ + +QV+
Sbjct: 195 TRESSYAKLIVQVK 208
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/82 (37%), Positives = 40/82 (48%), Gaps = 10/82 (12%)
Query: 77 EPSDATVLSGSVVEFVCRV-GGDPLPTILWRRD-----DGKM----PTGRAKILDDRSLQ 126
EP D V G C G P PT++W +D D K + R +I+D +L
Sbjct: 114 EPKDTRVAKGETALLECGPPKGIPEPTLIWIKDGVPLDDLKAMSFGASSRVRIVDGGNLL 173
Query: 127 IENVGPQDEGLYICDVENLVGS 148
I NV P DEG Y C +NLVG+
Sbjct: 174 ISNVEPIDEGNYKCIAQNLVGT 195
Score = 37.4 bits (85), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 33/114 (28%), Positives = 51/114 (44%), Gaps = 13/114 (11%)
Query: 238 NPRYIGRKMASLLIWNHPRVNRLSCFAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQE 297
+PR I ++ N P L+C EG P P++ W ++G V H ++
Sbjct: 9 SPRIIEHPTDLVVKKNEPAT--LNCKVEGKPEPTIEWFKDGEPVST--NEKKSHRVQFKD 64
Query: 298 GTL----RIQGVQKEDAGFFVCSALSVAGSTTVR-AFLQV----REFCVLPKGT 342
G L +QG +++D G + C A + G R A LQ+ +F V PK T
Sbjct: 65 GALFFYRTMQGKKEQDGGEYWCVAKNRVGQAVSRHASLQIAVLRDDFRVEPKDT 118
>pdb|2V9Q|A Chain A, First And Second Ig Domains From Human Robo1
pdb|2V9R|A Chain A, First And Second Ig Domains From Human Robo1 (Form 2)
Length = 212
Score = 97.1 bits (240), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 59/148 (39%), Positives = 78/148 (52%), Gaps = 18/148 (12%)
Query: 72 PFPISEPSDATVLSGSVVEFVCRVGGDPLPTILW---------RRDDGK-----MPTGRA 117
P + PSD V G C+ G P PTI W +DD + +P+G
Sbjct: 10 PRIVEHPSDLIVSKGEPATLNCKAEGRPTPTIEWYKGGERVETDKDDPRSHRMLLPSGSL 69
Query: 118 KILDDRSLQIENVGPQDEGLYICDVENLVG-SISLRASLTVHLLRDDFRAEPKDTRVASG 176
L R + P DEG+Y+C N +G ++S ASL V +LRDDFR P D VA G
Sbjct: 70 FFL--RIVHGRKSRP-DEGVYVCVARNYLGEAVSHDASLEVAILRDDFRQNPSDVMVAVG 126
Query: 177 ETALLECGPPKGQPEPTLHWKKNGQFID 204
E A++EC PP+G PEPT+ WKK+G +D
Sbjct: 127 EPAVMECQPPRGHPEPTISWKKDGSPLD 154
Score = 45.8 bits (107), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 56/208 (26%), Positives = 88/208 (42%), Gaps = 49/208 (23%)
Query: 168 PKDTRVASGETALLECGPPKGQPEPTLHWKKNGQFIDLES----SKSLDLSRRTLGWLRV 223
P D V+ GE A L C +G+P PT+ W K G+ ++ + S + L +L +LR+
Sbjct: 16 PSDLIVSKGEPATLNCKA-EGRPTPTIEWYKGGERVETDKDDPRSHRMLLPSGSLFFLRI 74
Query: 224 ------RP---LYWNVARPRANLNPRYIGRKM---ASL---LIWNHPRVN---------- 258
RP +Y VAR Y+G + ASL ++ + R N
Sbjct: 75 VHGRKSRPDEGVYVCVAR-------NYLGEAVSHDASLEVAILRDDFRQNPSDVMVAVGE 127
Query: 259 --RLSCF-AEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVC 315
+ C G P P++ W ++GS P + + G L I +K DAG +VC
Sbjct: 128 PAVMECQPPRGHPEPTISWKKDGS-----PLDDKDERITIRGGKLMITYTRKSDAGKYVC 182
Query: 316 SALSVAGSTTVRAFLQVREFCVLPKGTF 343
++ G +V E VL + +F
Sbjct: 183 VGTNMVGERES----EVAELTVLERPSF 206
Score = 33.5 bits (75), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 36/83 (43%), Gaps = 3/83 (3%)
Query: 78 PSDATVLSGSVVEFVCRV-GGDPLPTILWRRDDGKMPTGRAKI-LDDRSLQIENVGPQDE 135
PSD V G C+ G P PTI W++D + +I + L I D
Sbjct: 118 PSDVMVAVGEPAVMECQPPRGHPEPTISWKKDGSPLDDKDERITIRGGKLMITYTRKSDA 177
Query: 136 GLYICDVENLVGS-ISLRASLTV 157
G Y+C N+VG S A LTV
Sbjct: 178 GKYVCVGTNMVGERESEVAELTV 200
>pdb|3LAF|A Chain A, Structure Of Dcc, A Netrin-1 Receptor
Length = 403
Score = 80.5 bits (197), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 76/283 (26%), Positives = 110/283 (38%), Gaps = 33/283 (11%)
Query: 75 ISEPSDATVLSGSVVEFVCRVGGDPLPTILWRRDDGKMP----TGRAKILDDRSLQIENV 130
+S+ T G V C V GDP+PTI W+++ + R +L +LQI +
Sbjct: 125 LSQTESITAFMGDTVLLKCEVIGDPMPTIHWQKNQQDLNPIPGDSRVVVLPSGALQISRL 184
Query: 131 GPQDEGLYICDVENLVGSISLRASLTVHLLRDD-------FRAEPKDTRVASGETALLEC 183
P D G+Y C N S V +L D F P + G+ A+LEC
Sbjct: 185 QPGDSGVYRCSARN-PASTRTGNEAEVRILSDPGLHRQLYFLQRPSNVIAIEGKDAVLEC 243
Query: 184 GPPKGQPEPTLHWKKNGQFIDLESSKSLDLSRRTL----------GWLRVRPLYWN---- 229
G P P+ W + + I L S K L L G Y N
Sbjct: 244 C-VSGYPPPSFTWLRGEEVIQLRSKKYSLLGGSNLLISNVTDDDSGTYTCVVTYKNENIS 302
Query: 230 VARPRANLNPRYIGRKMASLLIWNHPRVNRLSCFAEGSPLPSVFWTQEGSQVLMFPGNAY 289
+ L P + ++L + + C G P+P+V W + G V+ P +
Sbjct: 303 ASAELTVLVPPWFLNHPSNLYAYESMDI-EFECAVSGKPVPTVNWMKNGDVVI--PSD-- 357
Query: 290 GHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQV 332
+ + LRI GV K D GF+ C A + AG+ A L V
Sbjct: 358 -YFQIVGGSNLRILGVVKSDEGFYQCVAENEAGNAQSSAQLIV 399
Score = 67.4 bits (163), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 77/275 (28%), Positives = 112/275 (40%), Gaps = 41/275 (14%)
Query: 75 ISEPSDATVLSGSVVEFVCRVGGD-PLPTILWRRDDGKMPTG---RAKILDDRSLQIENV 130
+SEPSDA + G V C D +P I W++D + G R + L + SL I+N+
Sbjct: 25 VSEPSDAVTMRGGNVLLNCSAESDRGVPVIKWKKDGLILALGMDDRKQQLPNGSLLIQNI 84
Query: 131 -----GPQDEGLYICDVE-NLVGSISLRASLTVHLLRDDFRAEPKDTRVASGETALLECG 184
DEGLY C+ GSI R + + F ++ + G+T LL+C
Sbjct: 85 LHSRHHKPDEGLYQCEASLGDSGSIISRTAKVMVAGPLRFLSQTESITAFMGDTVLLKC- 143
Query: 185 PPKGQPEPTLHWKKNGQFIDLE----SSKSLDLSRRTLGWLRVRPLYWNVARPRANLNPR 240
G P PT+HW+KN Q DL S+ + L L R++P V R A
Sbjct: 144 EVIGDPMPTIHWQKNQQ--DLNPIPGDSRVVVLPSGALQISRLQPGDSGVYRCSARNPAS 201
Query: 241 YIGRKMASLLIWNHPRVNR--------------------LSCFAEGSPLPSVFWTQEGSQ 280
A + I + P ++R L C G P PS W + G +
Sbjct: 202 TRTGNEAEVRILSDPGLHRQLYFLQRPSNVIAIEGKDAVLECCVSGYPPPSFTWLR-GEE 260
Query: 281 VLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVC 315
V+ Y L + L I V +D+G + C
Sbjct: 261 VIQLRSKKYSLLGGS---NLLISNVTDDDSGTYTC 292
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 47/90 (52%), Gaps = 1/90 (1%)
Query: 69 LIKPFPISEPSDATVLSGSVVEFVCRVGGDPLPTILWRRD-DGKMPTGRAKILDDRSLQI 127
L+ P+ ++ PS+ +EF C V G P+PT+ W ++ D +P+ +I+ +L+I
Sbjct: 310 LVPPWFLNHPSNLYAYESMDIEFECAVSGKPVPTVNWMKNGDVVIPSDYFQIVGGSNLRI 369
Query: 128 ENVGPQDEGLYICDVENLVGSISLRASLTV 157
V DEG Y C EN G+ A L V
Sbjct: 370 LGVVKSDEGFYQCVAENEAGNAQSSAQLIV 399
Score = 42.4 bits (98), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 44/187 (23%), Positives = 75/187 (40%), Gaps = 31/187 (16%)
Query: 164 FRAEPKDTRVASGETALLECGPPKGQPEPTLHWKKNGQFIDLESSKSLDLSRRTL--GWL 221
F +EP D G LL C + P + WKK+G + L +D ++ L G L
Sbjct: 24 FVSEPSDAVTMRGGNVLLNCSAESDRGVPVIKWKKDGLILAL----GMDDRKQQLPNGSL 79
Query: 222 RVRP-LYWNVARPRANL--------NPRYIGRKMASLLIWNHPRVNR------------- 259
++ L+ +P L + I + A +++ R
Sbjct: 80 LIQNILHSRHHKPDEGLYQCEASLGDSGSIISRTAKVMVAGPLRFLSQTESITAFMGDTV 139
Query: 260 -LSCFAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSAL 318
L C G P+P++ W + + PG++ + V G L+I +Q D+G + CSA
Sbjct: 140 LLKCEVIGDPMPTIHWQKNQQDLNPIPGDS--RVVVLPSGALQISRLQPGDSGVYRCSAR 197
Query: 319 SVAGSTT 325
+ A + T
Sbjct: 198 NPASTRT 204
>pdb|2YD9|A Chain A, Crystal Structure Of The N-Terminal Ig1-3 Module Of Human
Receptor Protein Tyrosine Phosphatase Sigma
Length = 304
Score = 77.4 bits (189), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 88/310 (28%), Positives = 132/310 (42%), Gaps = 67/310 (21%)
Query: 75 ISEPSDATVLSGSVVEFVCRVGGDPLPTILWRRDDGKMPTGRAKILD-DRS----LQIEN 129
I EP D +SG V FVC+ GDP P + W + K+ + R + ++ D S L+I+
Sbjct: 10 IKEPKDQIGVSGGVASFVCQATGDPKPRVTWNKKGKKVNSQRFETIEFDESAGAVLRIQP 69
Query: 130 V-GPQDEGLYICDVENLVGSISLRASLTVHLLRDD--------FRAEPKDTRVASGETAL 180
+ P+DE +Y C +N VG I++ A LTV LR+D P+ V TA
Sbjct: 70 LRTPRDENVYECVAQNSVGEITVHAKLTV--LREDQLPSGFPNIDMGPQLKVVERTRTAT 127
Query: 181 LECGPPKGQPEPTLHWKK----------NGQF-------IDLESSKSLD------LSRRT 217
+ C G P+P + W K NG+ + +ESS+ D ++ +
Sbjct: 128 MLCA-ASGNPDPEITWFKDFLPVDPSASNGRIKQLRSGALQIESSEETDQGKYECVATNS 186
Query: 218 LGWLRVRP--LYWNVARPRANLNPRYIGRKMASLLIWNH---PRVN-RLSCFAEGSPLPS 271
G P LY V N+ PR+ S+L +H P N ++C A GSP+P
Sbjct: 187 AGVRYSSPANLYVRV----QNVAPRF------SILPMSHEIMPGGNVNITCVAVGSPMPY 236
Query: 272 VFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQ 331
V W Q + G L + V+ D+ + C A+S G A +
Sbjct: 237 VKWMQGAEDLTPEDDMPVGR------NVLELTDVK--DSANYTCVAMSSLGVIEAVAQIT 288
Query: 332 VREFCVLPKG 341
V+ LPK
Sbjct: 289 VKS---LPKA 295
>pdb|1UEM|A Chain A, Solution Structure Of The First Fibronectin Type Iii
Domain Of Human Kiaa1568 Protein
Length = 117
Score = 77.0 bits (188), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 40/98 (40%), Positives = 55/98 (56%), Gaps = 3/98 (3%)
Query: 409 FPGPPAAPVILNTTRGSVTLGWGEPEPRGGGVAPVIGYTVEYFSSDLQTGWVVAAHRITS 468
PGPP+ P + + T+ SVTL W +P G P Y +E FS + W A+ + +
Sbjct: 15 LPGPPSKPQVTDVTKNSVTLSW---QPGTPGTLPASAYIIEAFSQSVSNSWQTVANHVKT 71
Query: 469 TSITVSDLKPDTSYMFIVRAENSHGLGIPSPVSPITRT 506
T TV L+P+T Y+F+VRA N GL PSP+S RT
Sbjct: 72 TLYTVRGLRPNTIYLFMVRAINPQGLSDPSPMSDPVRT 109
>pdb|3P3Y|A Chain A, Crystal Structure Of Neurofascin Homophilic Adhesion
Complex In Space Group P6522
pdb|3P40|A Chain A, Crystal Structure Of Neurofascin Adhesion Complex In Space
Group P3221
Length = 404
Score = 70.5 bits (171), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 44/131 (33%), Positives = 67/131 (51%), Gaps = 5/131 (3%)
Query: 73 FPISEPSDATVLSGSVVEFVCRVGGDPLPTILWRRDDGKMPTGRAKILD-DRSLQIENVG 131
+P S VL G + C G P P I W + G +P+ +AK + +++L+I NV
Sbjct: 224 YPQGTASSQMVLRGMDLLLECIASGVPTPDIAWYKKGGDLPSDKAKFENFNKALRITNVS 283
Query: 132 PQDEGLYICDVENLVGSISLRASLTVHLLRDDF-RAEPKDTRVASGETALLECGPPKGQP 190
+D G Y C N +GSI R +++V + + EPK+ +A GE L C G P
Sbjct: 284 EEDSGEYFCLASNKMGSI--RHTISVRVKAAPYWLDEPKNLILAPGEDGRLVCR-ANGNP 340
Query: 191 EPTLHWKKNGQ 201
+PT+ W NG+
Sbjct: 341 KPTVQWMVNGE 351
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 70/313 (22%), Positives = 116/313 (37%), Gaps = 60/313 (19%)
Query: 93 CRVGGDPLPTILWRRD--------DGKMPTGRAK---ILDDRSLQIENVGPQD-EGLYIC 140
C G+P P+ W R+ D ++ R ++D RS P++ EG Y C
Sbjct: 39 CEAKGNPAPSFHWTRNSRFFNIAKDPRVSMRRRSGTLVIDFRS----GGRPEEYEGEYQC 94
Query: 141 DVENLVGS-ISLRASLTVHLLRDDFRAEPKDTRVASGETALLECGPPKGQPEPTLHWKK- 198
N G+ +S R L V + V G L+C PP G P P + W
Sbjct: 95 FARNKFGTALSNRIRLQVSKSPLWPKENLDPVVVQEGAPLTLQCNPPPGLPSPVIFWMSS 154
Query: 199 ----------------------NGQFIDLESSKSLDLSRRTLGWLRVR-PLYWNVARPR- 234
N D+++ S + ++ + P V R
Sbjct: 155 SMEPITQDKRVSQGHNGDLYFSNVMLQDMQTDYSCNARFHFTHTIQQKNPFTLKVLTTRG 214
Query: 235 -ANLNPRYI---GRKMASLLIWNHPRVNRLSCFAEGSPLPSVFWTQEGSQVLMFPGNAYG 290
A P ++ G + +++ + L C A G P P + W ++G + P +
Sbjct: 215 VAERTPSFMYPQGTASSQMVLRGMDLL--LECIASGVPTPDIAWYKKGGDL---PSDKAK 269
Query: 291 HLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVREFCVLPKGTFTLGQP-N 349
+ + LRI V +ED+G + C A + GS +R + VR + + L +P N
Sbjct: 270 FENFNK--ALRITNVSEEDSGEYFCLASNKMGS--IRHTISVR----VKAAPYWLDEPKN 321
Query: 350 LATGNSDLRRIAC 362
L + R+ C
Sbjct: 322 LILAPGEDGRLVC 334
Score = 37.0 bits (84), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
Query: 169 KDTRVASGETALLECGPPKGQPEPTLHWKKNGQFIDLESSKSLDLSRRT 217
KD V + L+EC KG P P+ HW +N +F ++ + + RR+
Sbjct: 25 KDHIVDPRDNILIECEA-KGNPAPSFHWTRNSRFFNIAKDPRVSMRRRS 72
Score = 35.0 bits (79), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 72/323 (22%), Positives = 117/323 (36%), Gaps = 49/323 (15%)
Query: 42 SRSIFGSVLGARGALSDDQWKLIAKEALIKPFPISEPSDATVLSGSVVEFVCRVG-GDPL 100
+R+ FG+ L R L + L KE L V G+ + C G P
Sbjct: 96 ARNKFGTALSNRIRLQVSKSPLWPKENL---------DPVVVQEGAPLTLQCNPPPGLPS 146
Query: 101 PTILWRRDDGKMPTGRAKILDDRS--LQIENVGPQD-EGLYICDVE-NLVGSISLRASLT 156
P I W + T ++ + L NV QD + Y C+ + +I + T
Sbjct: 147 PVIFWMSSSMEPITQDKRVSQGHNGDLYFSNVMLQDMQTDYSCNARFHFTHTIQQKNPFT 206
Query: 157 VHLLRDDFRAE-------PKDT----RVASGETALLECGPPKGQPEPTLHWKKNGQFIDL 205
+ +L AE P+ T V G LLEC G P P + W K G +
Sbjct: 207 LKVLTTRGVAERTPSFMYPQGTASSQMVLRGMDLLLECIA-SGVPTPDIAWYKKGGDLPS 265
Query: 206 ESSKSLDLSRRTLGWLRVRPL-------YWNVARPRANLNPRYIGRKMASLLIW-NHPRV 257
+ +K + ++ LR+ + Y+ +A + I ++ + W + P+
Sbjct: 266 DKAKFENFNKA----LRITNVSEEDSGEYFCLASNKMGSIRHTISVRVKAAPYWLDEPKN 321
Query: 258 --------NRLSCFAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKED 309
RL C A G+P P+V W G + P N + T+ + Q
Sbjct: 322 LILAPGEDGRLVCRANGNPKPTVQWMVNGEPLQSAPPNPNREV---AGDTIIFRDTQISS 378
Query: 310 AGFFVCSALSVAGSTTVRAFLQV 332
+ C+ + G AF+ V
Sbjct: 379 RAVYQCNTSNEHGYLLANAFVSV 401
>pdb|3KLD|A Chain A, Ptprg Cntn4 Complex
Length = 384
Score = 68.9 bits (167), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 48/135 (35%), Positives = 64/135 (47%), Gaps = 19/135 (14%)
Query: 73 FPISEPSDATVLSGSVVEFVCRVGGDPLPTILWRRDDGKMPTGRAKILDDRS-LQIENVG 131
FP + P++ G+ V+ C G+P+PTILWRR DGK +A+ L+I N
Sbjct: 211 FPETVPAE----KGTTVKLECFALGNPVPTILWRRADGKPIARKARRHKSNGILEIPNFQ 266
Query: 132 PQDEGLYICDVENLVGSISLRASLTVHLLRDDFRAEP------KDTRVASGETALLECGP 185
+D G Y C EN G + LT F A+P D VA E+ EC
Sbjct: 267 QEDAGSYECVAENSRGKNVAKGQLT-------FYAQPNWVQIINDIHVAMEESVFWEC-K 318
Query: 186 PKGQPEPTLHWKKNG 200
G+P+PT W KNG
Sbjct: 319 ANGRPKPTYRWLKNG 333
Score = 59.3 bits (142), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 62/271 (22%), Positives = 102/271 (37%), Gaps = 35/271 (12%)
Query: 89 VEFVCRVGGDPLPTILWRRDDGKMPTG---RAKILDDRSLQIENVGP-QDEGLYICDVEN 144
V+ C V G+P P I W+ + + G R ++D SL I N QD G Y C N
Sbjct: 26 VKLSCEVKGNPKPHIRWKLNGTDVDIGMDFRYSVVDG-SLLINNPNKTQDAGTYQCIATN 84
Query: 145 LVGSISLRASLTVHLLRDDFRAEPKDT-RVASGETALLECGPPKGQPEPTLHW------- 196
G+I R + ++F+ + T V G+ +L CGPP E + W
Sbjct: 85 SFGTIVSREAKLQFAYLENFKTRTRSTVSVRRGQGMVLLCGPPPHSGELSYAWIFNEYPS 144
Query: 197 -KKNGQFIDLESSKSLDLSRRTLGWLRVRPLYWNVARPRANLNPRY-IGRKMASLLIWNH 254
+ N +F+ E+ + N L P + + ++
Sbjct: 145 YQDNRRFVSQETGNLYIAKVEKSDVGNYTCVVTNTVTNHKVLGPPTPLILRNDGVMGEYE 204
Query: 255 PRVN---------------RLSCFAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGT 299
P++ +L CFA G+P+P++ W + + + + G
Sbjct: 205 PKIEVQFPETVPAEKGTTVKLECFALGNPVPTILWRRADGKPIARKARRH-----KSNGI 259
Query: 300 LRIQGVQKEDAGFFVCSALSVAGSTTVRAFL 330
L I Q+EDAG + C A + G + L
Sbjct: 260 LEIPNFQQEDAGSYECVAENSRGKNVAKGQL 290
Score = 39.3 bits (90), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 60/236 (25%), Positives = 89/236 (37%), Gaps = 39/236 (16%)
Query: 124 SLQIENVGPQDEGLYICDVENLVGSISLRASLTVHLLRDDF---RAEPK-------DTRV 173
+L I V D G Y C V N V + + T +LR+D EPK
Sbjct: 158 NLYIAKVEKSDVGNYTCVVTNTVTNHKVLGPPTPLILRNDGVMGEYEPKIEVQFPETVPA 217
Query: 174 ASGETALLECGPPKGQPEPTLHWKK-NGQFIDLESSKSLDLSRRTLGWLRVRPLYWNVAR 232
G T LEC G P PT+ W++ +G+ I ++ + ++ G L + A
Sbjct: 218 EKGTTVKLECFA-LGNPVPTILWRRADGKPIARKARR-----HKSNGILEIPNFQQEDAG 271
Query: 233 PRANLNPRYIGRKMA--SLLIWNHPR----VNRL----------SCFAEGSPLPSVFWTQ 276
+ G+ +A L + P +N + C A G P P+ W +
Sbjct: 272 SYECVAENSRGKNVAKGQLTFYAQPNWVQIINDIHVAMEESVFWECKANGRPKPTYRWLK 331
Query: 277 EGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQV 332
G +L + + Q GTL I V DAG + C A + G A L V
Sbjct: 332 NGDPLL-----TRDRIQIEQ-GTLNITIVNLSDAGMYQCVAENKHGVIFSSAELSV 381
Score = 37.4 bits (85), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 40/148 (27%), Positives = 58/148 (39%), Gaps = 14/148 (9%)
Query: 17 RAEIEPATRTNRVSISGD----PGFDSRRSRSIFGSVLGARGALSDDQWKLIAKEALI-- 70
RA+ +P R R S P F + S +RG K +AK L
Sbjct: 241 RADGKPIARKARRHKSNGILEIPNFQQEDAGSYECVAENSRG-------KNVAKGQLTFY 293
Query: 71 -KPFPISEPSDATVLSGSVVEFVCRVGGDPLPTILWRRDDGKMPTGRAKILDDRSLQIEN 129
+P + +D V V + C+ G P PT W ++ + T ++ +L I
Sbjct: 294 AQPNWVQIINDIHVAMEESVFWECKANGRPKPTYRWLKNGDPLLTRDRIQIEQGTLNITI 353
Query: 130 VGPQDEGLYICDVENLVGSISLRASLTV 157
V D G+Y C EN G I A L+V
Sbjct: 354 VNLSDAGMYQCVAENKHGVIFSSAELSV 381
>pdb|3JXA|A Chain A, Immunoglobulin Domains 1-4 Of Mouse Cntn4
pdb|3JXA|B Chain B, Immunoglobulin Domains 1-4 Of Mouse Cntn4
Length = 383
Score = 68.9 bits (167), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 48/135 (35%), Positives = 64/135 (47%), Gaps = 19/135 (14%)
Query: 73 FPISEPSDATVLSGSVVEFVCRVGGDPLPTILWRRDDGKMPTGRAKILDDRS-LQIENVG 131
FP + P++ G+ V+ C G+P+PTILWRR DGK +A+ L+I N
Sbjct: 210 FPETVPAE----KGTTVKLECFALGNPVPTILWRRADGKPIARKARRHKSNGILEIPNFQ 265
Query: 132 PQDEGLYICDVENLVGSISLRASLTVHLLRDDFRAEP------KDTRVASGETALLECGP 185
+D G Y C EN G + LT F A+P D VA E+ EC
Sbjct: 266 QEDAGSYECVAENSRGKNVAKGQLT-------FYAQPNWVQIINDIHVAMEESVFWEC-K 317
Query: 186 PKGQPEPTLHWKKNG 200
G+P+PT W KNG
Sbjct: 318 ANGRPKPTYRWLKNG 332
Score = 58.9 bits (141), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 62/271 (22%), Positives = 102/271 (37%), Gaps = 35/271 (12%)
Query: 89 VEFVCRVGGDPLPTILWRRDDGKMPTG---RAKILDDRSLQIENVGP-QDEGLYICDVEN 144
V+ C V G+P P I W+ + + G R ++D SL I N QD G Y C N
Sbjct: 25 VKLSCEVKGNPKPHIRWKLNGTDVDIGMDFRYSVVDG-SLLINNPNKTQDAGTYQCIATN 83
Query: 145 LVGSISLRASLTVHLLRDDFRAEPKDT-RVASGETALLECGPPKGQPEPTLHW------- 196
G+I R + ++F+ + T V G+ +L CGPP E + W
Sbjct: 84 SFGTIVSREAKLQFAYLENFKTRTRSTVSVRRGQGMVLLCGPPPHSGELSYAWIFNEYPS 143
Query: 197 -KKNGQFIDLESSKSLDLSRRTLGWLRVRPLYWNVARPRANLNPRY-IGRKMASLLIWNH 254
+ N +F+ E+ + N L P + + ++
Sbjct: 144 YQDNRRFVSQETGNLYIAKVEKSDVGNYTCVVTNTVTNHKVLGPPTPLILRNDGVMGEYE 203
Query: 255 PRVN---------------RLSCFAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGT 299
P++ +L CFA G+P+P++ W + + + + G
Sbjct: 204 PKIEVQFPETVPAEKGTTVKLECFALGNPVPTILWRRADGKPIARKARRH-----KSNGI 258
Query: 300 LRIQGVQKEDAGFFVCSALSVAGSTTVRAFL 330
L I Q+EDAG + C A + G + L
Sbjct: 259 LEIPNFQQEDAGSYECVAENSRGKNVAKGQL 289
Score = 38.9 bits (89), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 60/236 (25%), Positives = 89/236 (37%), Gaps = 39/236 (16%)
Query: 124 SLQIENVGPQDEGLYICDVENLVGSISLRASLTVHLLRDDF---RAEPK-------DTRV 173
+L I V D G Y C V N V + + T +LR+D EPK
Sbjct: 157 NLYIAKVEKSDVGNYTCVVTNTVTNHKVLGPPTPLILRNDGVMGEYEPKIEVQFPETVPA 216
Query: 174 ASGETALLECGPPKGQPEPTLHWKK-NGQFIDLESSKSLDLSRRTLGWLRVRPLYWNVAR 232
G T LEC G P PT+ W++ +G+ I ++ + ++ G L + A
Sbjct: 217 EKGTTVKLECFA-LGNPVPTILWRRADGKPIARKARR-----HKSNGILEIPNFQQEDAG 270
Query: 233 PRANLNPRYIGRKMA--SLLIWNHPR----VNRL----------SCFAEGSPLPSVFWTQ 276
+ G+ +A L + P +N + C A G P P+ W +
Sbjct: 271 SYECVAENSRGKNVAKGQLTFYAQPNWVQIINDIHVAMEESVFWECKANGRPKPTYRWLK 330
Query: 277 EGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQV 332
G +L + + Q GTL I V DAG + C A + G A L V
Sbjct: 331 NGDPLL-----TRDRIQIEQ-GTLNITIVNLSDAGMYQCVAENKHGVIFSSAELSV 380
Score = 37.4 bits (85), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 40/148 (27%), Positives = 58/148 (39%), Gaps = 14/148 (9%)
Query: 17 RAEIEPATRTNRVSISGD----PGFDSRRSRSIFGSVLGARGALSDDQWKLIAKEALI-- 70
RA+ +P R R S P F + S +RG K +AK L
Sbjct: 240 RADGKPIARKARRHKSNGILEIPNFQQEDAGSYECVAENSRG-------KNVAKGQLTFY 292
Query: 71 -KPFPISEPSDATVLSGSVVEFVCRVGGDPLPTILWRRDDGKMPTGRAKILDDRSLQIEN 129
+P + +D V V + C+ G P PT W ++ + T ++ +L I
Sbjct: 293 AQPNWVQIINDIHVAMEESVFWECKANGRPKPTYRWLKNGDPLLTRDRIQIEQGTLNITI 352
Query: 130 VGPQDEGLYICDVENLVGSISLRASLTV 157
V D G+Y C EN G I A L+V
Sbjct: 353 VNLSDAGMYQCVAENKHGVIFSSAELSV 380
>pdb|3DMK|A Chain A, Crystal Structure Of Down Syndrome Cell Adhesion Molecule
(Dscam) Isoform 1.30.30, N-Terminal Eight Ig Domains
pdb|3DMK|B Chain B, Crystal Structure Of Down Syndrome Cell Adhesion Molecule
(Dscam) Isoform 1.30.30, N-Terminal Eight Ig Domains
pdb|3DMK|C Chain C, Crystal Structure Of Down Syndrome Cell Adhesion Molecule
(Dscam) Isoform 1.30.30, N-Terminal Eight Ig Domains
Length = 816
Score = 67.0 bits (162), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 74/281 (26%), Positives = 116/281 (41%), Gaps = 44/281 (15%)
Query: 75 ISEPSDATVLSGSVVEFVCRVGGDPLPTILWRRDDGKMPTGRA-KILDDRSLQIENVG-P 132
I + +++G + C V G P+ +I+W RD+ +P R K+ + +L IENV
Sbjct: 530 IRQMEKKAIVAGETLIVTCPVAGYPIDSIVWERDNRALPINRKQKVFPNGTLIIENVERN 589
Query: 133 QDEGLYICDVENLVGSISLRASLTVHLLR----DDFRAEPKDTRVASGETALLECGPPKG 188
D+ Y C +N G S R SL V ++ F E +V G+ L C P G
Sbjct: 590 SDQATYTCVAKNQEG-YSARGSLEVQVMVLPRIIPFAFEEGPAQV--GQYLTLHCSVPGG 646
Query: 189 QPEPTLHWKKNGQFIDLESSKSLDLSRRTLGWLRVRPLYWNVARPRANLNPRYIGRKMAS 248
+ W +GQ I S+ L ++ +G R L N R +A
Sbjct: 647 DLPLNIDWTLDGQAI----SEDLGITTSRVG-RRGSVLTIEAVEASHAGNFTCHARNLAG 701
Query: 249 -------LLIWNHPR--------------VNRLSCFAEGSPLPSVFWTQEGSQVLMFPGN 287
L ++ PR ++ C A+G P P V W + V PG
Sbjct: 702 HQQFTTPLNVYVPPRWILEPTDKAFAQGSDAKVECKADGFPKPQVTWKK---AVGDTPGE 758
Query: 288 AYGHLHVT-----QEGTLRIQGVQKEDAGFFVCSALSVAGS 323
Y L + +EGTL + +QK + G+++C A++ GS
Sbjct: 759 -YKDLKKSDNIRVEEGTLHVDNIQKTNEGYYLCEAINGIGS 798
Score = 61.2 bits (147), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 73/273 (26%), Positives = 104/273 (38%), Gaps = 24/273 (8%)
Query: 80 DATVLSGS-VVEFVCRVGGDPLPTILWRRDDGKMPTGRAKILDDR------SLQIENVGP 132
D SGS + +C G P+P W + +A +L+DR +L I++
Sbjct: 256 DMKTYSGSSTMALLCPAQGYPVPVFRWYKFIEGTTRKQAVVLNDRVKQVSGTLIIKDAVV 315
Query: 133 QDEGLYICDVENLVGSISLRASLTVHLLRDDFRAEPKDTRVASGETALLECGPPKGQPEP 192
+D G Y+C V N VG S+ LTV + +P V G A+ C G P
Sbjct: 316 EDSGKYLCVVNNSVGGESVETVLTVTAPL-SAKIDPPTQTVDFGRPAVFTC-QYTGNPIK 373
Query: 193 TLHWKKNGQFID-------LESSKSLDLSRRTLGWLRVRPLYWNVARPR--ANLNPRYIG 243
T+ W K+G+ I +ES K D R A + +P I
Sbjct: 374 TVSWMKDGKAIGHSESVLRIESVKKEDKGMYQCFVRNDRESAEASAELKLGGRFDPPVIR 433
Query: 244 RKMASLLIWNHPRVNRLSCFAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGT---- 299
+ + P V L C A G+P P + W +G ++ G +VT G
Sbjct: 434 QAFQEETMEPGPSV-FLKCVAGGNPTPEISWELDGKKIANNDRYQVGQ-YVTVNGDVVSY 491
Query: 300 LRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQV 332
L I V D G + C A S G A L V
Sbjct: 492 LNITSVHANDGGLYKCIAKSKVGVAEHSAKLNV 524
Score = 60.5 bits (145), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 67/290 (23%), Positives = 122/290 (42%), Gaps = 44/290 (15%)
Query: 77 EPSDATVLSGSVVEFVCRVGGDPLPTILWRRDDGKMPTGRAKILDDRSLQIENVGPQDEG 136
+P TV G F C+ G+P+ T+ W +D G+A + L+IE+V +D+G
Sbjct: 349 DPPTQTVDFGRPAVFTCQYTGNPIKTVSWMKD------GKAIGHSESVLRIESVKKEDKG 402
Query: 137 LYICDVENLVGSISLRASLTVH------LLRDDFRAEPKDTRVASGETALLECGPPKGQP 190
+Y C V N S A L + ++R F+ E + G + L+C G P
Sbjct: 403 MYQCFVRNDRESAEASAELKLGGRFDPPVIRQAFQEETME----PGPSVFLKC-VAGGNP 457
Query: 191 EPTLHWKKNGQFID----LESSKSLDLSRRTLGWLRVRPLYWNVARPRANLNPRYIG--R 244
P + W+ +G+ I + + + ++ + +L + ++ N + +G
Sbjct: 458 TPEISWELDGKKIANNDRYQVGQYVTVNGDVVSYLNITSVHANDGGLYKCIAKSKVGVAE 517
Query: 245 KMASLLIWNHPRVNRL-------------SCFAEGSPLPSVFWTQEGSQVLMFPGNAYGH 291
A L ++ P + ++ +C G P+ S+ W ++ P N
Sbjct: 518 HSAKLNVYGLPYIRQMEKKAIVAGETLIVTCPVAGYPIDSIVWERDNR---ALPINR--K 572
Query: 292 LHVTQEGTLRIQGVQKE-DAGFFVCSALSVAGSTTVRAFLQVREFCVLPK 340
V GTL I+ V++ D + C A + G + R L+V + VLP+
Sbjct: 573 QKVFPNGTLIIENVERNSDQATYTCVAKNQEGYSA-RGSLEV-QVMVLPR 620
Score = 46.6 bits (109), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 68/309 (22%), Positives = 116/309 (37%), Gaps = 55/309 (17%)
Query: 72 PFPISEPSDATVLSGSV-VEFVCRVGGDPLPTILWRRDD----GKMPTGRAKILDDRSLQ 126
P + EP++ S S E C+ G+P+P I+W R D G +P G +I D L
Sbjct: 39 PVFLKEPTNRIDFSNSTGAEIECKASGNPMPEIIWIRSDGTAVGDVP-GLRQISSDGKLV 97
Query: 127 IENVGPQD------EGLYICDVENLVGSISLRASLTVHLLRDDFRAEPKDTRVASGETAL 180
+D +Y C N GSI R ++ + A+ V G +A+
Sbjct: 98 FPPFRAEDYRQEVHAQVYACLARNQFGSIISRDVHVRAVVAQYYEADVNKEHVIRGNSAV 157
Query: 181 LECGPPKGQPE--PTLHW------------KKNGQFIDLES---------------SKSL 211
++C P + + W + +G+++ L S S
Sbjct: 158 IKCLIPSFVADFVEVVSWHTDEEENYFPGAEYDGKYLVLPSGELHIREVGPEDGYKSYQC 217
Query: 212 DLSRRTLGWLRVRPLYWN--VARPRANLNPRYIGRKMASLLIWNHPRVNRLSCFAEGSPL 269
R G R+ + P ++ P+ + + ++ L C A+G P+
Sbjct: 218 RTKHRLTGETRLSATKGRLVITEPISSAVPKVVSLAKFDMKTYSGSSTMALLCPAQGYPV 277
Query: 270 PSVFWTQ--EGS---QVLMFPGNAYGHLHVTQ-EGTLRIQGVQKEDAGFFVCSALSVAGS 323
P W + EG+ Q ++ + V Q GTL I+ ED+G ++C + G
Sbjct: 278 PVFRWYKFIEGTTRKQAVVL------NDRVKQVSGTLIIKDAVVEDSGKYLCVVNNSVGG 331
Query: 324 TTVRAFLQV 332
+V L V
Sbjct: 332 ESVETVLTV 340
>pdb|2YD2|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human
Receptor Protein Tyrosine Phosphatase Sigma
Length = 214
Score = 67.0 bits (162), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 50/150 (33%), Positives = 76/150 (50%), Gaps = 19/150 (12%)
Query: 75 ISEPSDATVLSGSVVEFVCRVGGDPLPTILWRRDDGKMPTGRAKILD-DRS----LQIEN 129
I EP D +SG V FVC+ GDP P + W + K+ + R + ++ D S L+I+
Sbjct: 10 IKEPKDQIGVSGGVASFVCQATGDPKPRVTWNKKGKKVNSQRFETIEFDESAGAVLRIQP 69
Query: 130 V-GPQDEGLYICDVENLVGSISLRASLTVHLLRDD--------FRAEPKDTRVASGETAL 180
+ P+DE +Y C +N VG I++ A LTV LR+D P+ V TA
Sbjct: 70 LRTPRDENVYECVAQNSVGEITVHAKLTV--LREDQLPSGFPNIDMGPQLKVVERTRTAT 127
Query: 181 LECGPPKGQPEPTLHWKKNGQFIDLESSKS 210
+ C G P+P + W K+ F+ ++ S S
Sbjct: 128 MLCA-ASGNPDPEITWFKD--FLPVDPSAS 154
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 46/205 (22%), Positives = 83/205 (40%), Gaps = 46/205 (22%)
Query: 164 FRAEPKDTRVASGETALLECGPPKGQPEPTLHWKKNGQFIDLESSKSLDLSRRTLGWLRV 223
F EPKD SG A C G P+P + W K G+ ++ + ++++ LR+
Sbjct: 9 FIKEPKDQIGVSGGVASFVCQA-TGDPKPRVTWNKKGKKVNSQRFETIEFDESAGAVLRI 67
Query: 224 RPL--------YWNVAR------------------------PRANLNPRYIGRKMASLLI 251
+PL Y VA+ P ++ P+ L +
Sbjct: 68 QPLRTPRDENVYECVAQNSVGEITVHAKLTVLREDQLPSGFPNIDMGPQ--------LKV 119
Query: 252 WNHPRVNRLSCFAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAG 311
R + C A G+P P + W ++ + + P + G + + G L+I+ ++ D G
Sbjct: 120 VERTRTATMLCAASGNPDPEITWFKDF--LPVDPSASNGRIKQLRSGALQIESSEETDQG 177
Query: 312 FFVCSALSVAG---STTVRAFLQVR 333
+ C A + AG S+ +++VR
Sbjct: 178 KYECVATNSAGVRYSSPANLYVRVR 202
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 35/76 (46%), Gaps = 5/76 (6%)
Query: 91 FVCRVGGDPLPTILWRRD----DGKMPTGRAKILDDRSLQIENVGPQDEGLYICDVENLV 146
+C G+P P I W +D D GR K L +LQIE+ D+G Y C N
Sbjct: 128 MLCAASGNPDPEITWFKDFLPVDPSASNGRIKQLRSGALQIESSEETDQGKYECVATNSA 187
Query: 147 G-SISLRASLTVHLLR 161
G S A+L V + R
Sbjct: 188 GVRYSSPANLYVRVRR 203
Score = 32.0 bits (71), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 40/100 (40%), Gaps = 11/100 (11%)
Query: 257 VNRLSCFAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQE--GTLRIQGVQK-EDAGFF 313
V C A G P P V W ++G +V + + + LRIQ ++ D +
Sbjct: 23 VASFVCQATGDPKPRVTWNKKGKKV---NSQRFETIEFDESAGAVLRIQPLRTPRDENVY 79
Query: 314 VCSALSVAGSTTVRAFLQVREFCVLPKGTFTLGQPNLATG 353
C A + G TV A L V LP G PN+ G
Sbjct: 80 ECVAQNSVGEITVHAKLTVLREDQLPSGF-----PNIDMG 114
>pdb|2YD3|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human
Receptor Protein Tyrosine Phosphatase Sigma
Length = 202
Score = 67.0 bits (162), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 50/150 (33%), Positives = 76/150 (50%), Gaps = 19/150 (12%)
Query: 75 ISEPSDATVLSGSVVEFVCRVGGDPLPTILWRRDDGKMPTGRAKILD-DRS----LQIEN 129
I EP D +SG V FVC+ GDP P + W + K+ + R + ++ D S L+I+
Sbjct: 10 IKEPKDQIGVSGGVASFVCQATGDPKPRVTWNKKGKKVNSQRFETIEFDESAGAVLRIQP 69
Query: 130 V-GPQDEGLYICDVENLVGSISLRASLTVHLLRDD--------FRAEPKDTRVASGETAL 180
+ P+DE +Y C +N VG I++ A LTV LR+D P+ V TA
Sbjct: 70 LRTPRDENVYECVAQNSVGEITVHAKLTV--LREDQLPSGFPNIDMGPQLKVVERTRTAT 127
Query: 181 LECGPPKGQPEPTLHWKKNGQFIDLESSKS 210
+ C G P+P + W K+ F+ ++ S S
Sbjct: 128 MLCA-ASGNPDPEITWFKD--FLPVDPSAS 154
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 46/205 (22%), Positives = 83/205 (40%), Gaps = 46/205 (22%)
Query: 164 FRAEPKDTRVASGETALLECGPPKGQPEPTLHWKKNGQFIDLESSKSLDLSRRTLGWLRV 223
F EPKD SG A C G P+P + W K G+ ++ + ++++ LR+
Sbjct: 9 FIKEPKDQIGVSGGVASFVCQA-TGDPKPRVTWNKKGKKVNSQRFETIEFDESAGAVLRI 67
Query: 224 RPL--------YWNVAR------------------------PRANLNPRYIGRKMASLLI 251
+PL Y VA+ P ++ P+ L +
Sbjct: 68 QPLRTPRDENVYECVAQNSVGEITVHAKLTVLREDQLPSGFPNIDMGPQ--------LKV 119
Query: 252 WNHPRVNRLSCFAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAG 311
R + C A G+P P + W ++ + + P + G + + G L+I+ ++ D G
Sbjct: 120 VERTRTATMLCAASGNPDPEITWFKDF--LPVDPSASNGRIKQLRSGALQIESSEETDQG 177
Query: 312 FFVCSALSVAG---STTVRAFLQVR 333
+ C A + AG S+ +++VR
Sbjct: 178 KYECVATNSAGVRYSSPANLYVRVR 202
Score = 39.3 bits (90), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 28/61 (45%), Gaps = 4/61 (6%)
Query: 91 FVCRVGGDPLPTILWRRD----DGKMPTGRAKILDDRSLQIENVGPQDEGLYICDVENLV 146
+C G+P P I W +D D GR K L +LQIE+ D+G Y C N
Sbjct: 128 MLCAASGNPDPEITWFKDFLPVDPSASNGRIKQLRSGALQIESSEETDQGKYECVATNSA 187
Query: 147 G 147
G
Sbjct: 188 G 188
Score = 32.3 bits (72), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 40/100 (40%), Gaps = 11/100 (11%)
Query: 257 VNRLSCFAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQE--GTLRIQGVQK-EDAGFF 313
V C A G P P V W ++G +V + + + LRIQ ++ D +
Sbjct: 23 VASFVCQATGDPKPRVTWNKKGKKV---NSQRFETIEFDESAGAVLRIQPLRTPRDENVY 79
Query: 314 VCSALSVAGSTTVRAFLQVREFCVLPKGTFTLGQPNLATG 353
C A + G TV A L V LP G PN+ G
Sbjct: 80 ECVAQNSVGEITVHAKLTVLREDQLPSGF-----PNIDMG 114
>pdb|2YD6|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human
Receptor Protein Tyrosine Phosphatase Delta
pdb|2YD7|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human
Receptor Protein Tyrosine Phosphatase Delta
pdb|2YD7|B Chain B, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human
Receptor Protein Tyrosine Phosphatase Delta
Length = 212
Score = 66.6 bits (161), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 52/164 (31%), Positives = 82/164 (50%), Gaps = 23/164 (14%)
Query: 78 PSDATVLSGSVVEFVCRVGGDPLPTILWRRDDGKMPTGRAKIL--DDRS---LQIENV-G 131
P D T +SG V F+C+ GDP P I+W + K+ R +++ DD S L+I+ +
Sbjct: 13 PVDQTGVSGGVASFICQATGDPRPKIVWNKKGKKVSNQRFEVIEFDDGSGSVLRIQPLRT 72
Query: 132 PQDEGLYICDVENLVGSISLRASLTVHLLRDD--------FRAEPKDTRVASGETALLEC 183
P+DE +Y C N VG IS+ LTV LR+D P+ V TA + C
Sbjct: 73 PRDEAIYECVASNNVGEISVSTRLTV--LREDQIPRGFPTIDMGPQLKVVERTRTATMLC 130
Query: 184 GPPKGQPEPTLHWKKNGQFIDLESSKS----LDLSRRTLGWLRV 223
G P+P + W K+ F+ +++S + L ++G L++
Sbjct: 131 A-ASGNPDPEITWFKD--FLPVDTSNNNGRIKQLRSESIGALQI 171
Score = 38.9 bits (89), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 43/185 (23%), Positives = 67/185 (36%), Gaps = 26/185 (14%)
Query: 164 FRAEPKDTRVASGETALLECGPPKGQPEPTLHWKKNGQFIDLESSKSLDLSRRTLGWLRV 223
F P D SG A C G P P + W K G+ + + + ++ + LR+
Sbjct: 9 FTRTPVDQTGVSGGVASFIC-QATGDPRPKIVWNKKGKKVSNQRFEVIEFDDGSGSVLRI 67
Query: 224 RPL--------YWNVARPRAN----------LNPRYIGRKMAS------LLIWNHPRVNR 259
+PL Y VA L I R + L + R
Sbjct: 68 QPLRTPRDEAIYECVASNNVGEISVSTRLTVLREDQIPRGFPTIDMGPQLKVVERTRTAT 127
Query: 260 LSCFAEGSPLPSVFWTQEGSQVLMFPGNA-YGHLHVTQEGTLRIQGVQKEDAGFFVCSAL 318
+ C A G+P P + W ++ V N L G L+I+ ++ D G + C A
Sbjct: 128 MLCAASGNPDPEITWFKDFLPVDTSNNNGRIKQLRSESIGALQIEQSEESDQGKYECVAT 187
Query: 319 SVAGS 323
+ AG+
Sbjct: 188 NSAGT 192
Score = 35.8 bits (81), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 28/65 (43%), Gaps = 7/65 (10%)
Query: 91 FVCRVGGDPLPTILWRRD----DGKMPTGRAKILDDRS---LQIENVGPQDEGLYICDVE 143
+C G+P P I W +D D GR K L S LQIE D+G Y C
Sbjct: 128 MLCAASGNPDPEITWFKDFLPVDTSNNNGRIKQLRSESIGALQIEQSEESDQGKYECVAT 187
Query: 144 NLVGS 148
N G+
Sbjct: 188 NSAGT 192
Score = 30.4 bits (67), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 39/88 (44%), Gaps = 8/88 (9%)
Query: 262 CFAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGT---LRIQGVQK-EDAGFFVCSA 317
C A G P P + W ++G +V N + +G+ LRIQ ++ D + C A
Sbjct: 28 CQATGDPRPKIVWNKKGKKV----SNQRFEVIEFDDGSGSVLRIQPLRTPRDEAIYECVA 83
Query: 318 LSVAGSTTVRAFLQVREFCVLPKGTFTL 345
+ G +V L V +P+G T+
Sbjct: 84 SNNVGEISVSTRLTVLREDQIPRGFPTI 111
>pdb|1CS6|A Chain A, N-terminal Fragment Of Axonin-1 From Chicken
Length = 382
Score = 66.2 bits (160), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 40/125 (32%), Positives = 61/125 (48%), Gaps = 6/125 (4%)
Query: 78 PSDATVLSGSVVEFVCRVGGDPLPTILWRRDDGKMPTGRAKILDDRS-LQIENVGPQDEG 136
P+D L+G +V C G+P+P I WR+ DG + K L L I+NV +DEG
Sbjct: 214 PADTYALTGQMVTLECFAFGNPVPQIKWRKLDGSQTS---KWLSSEPLLHIQNVDFEDEG 270
Query: 137 LYICDVENLVGSISLRASLTVHLLRDDFRAEPKDTRVASGETALLECGPPKGQPEPTLHW 196
Y C+ EN+ G + + + +H + D+ DT G C G+P P + W
Sbjct: 271 TYECEAENIKGRDTYQGRIIIH-AQPDWLDVITDTEADIGSDLRWSC-VASGKPRPAVRW 328
Query: 197 KKNGQ 201
++GQ
Sbjct: 329 LRDGQ 333
Score = 57.0 bits (136), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 62/273 (22%), Positives = 105/273 (38%), Gaps = 45/273 (16%)
Query: 89 VEFVCRVGGDPLPTILWRRDDGKM---PTGRAKILDDRSLQIENVGPQDEGLYICDVENL 145
V CR +P T W+ + ++ P R +++ + V +D G Y C N
Sbjct: 25 VTLTCRARANPPATYRWKMNGTELKMGPDSRYRLVAGDLVISNPVKAKDAGSYQCVATNA 84
Query: 146 VGSI-SLRASLTVHLLRDDFRAEPKD-TRVASGETALLECGPPKGQPEPTLHWKKNGQFI 203
G++ S ASL L++ F AE +D ++ G + C PP P + W N +F
Sbjct: 85 RGTVVSREASLRFGFLQE-FSAEERDPVKITEGWGVMFTCSPPPHYPALSYRWLLN-EFP 142
Query: 204 DLESSKSLDLSRRTLGWLRVRPL-------YWNVARPRANLNPRYIGRKMASLLIWNHP- 255
+ + +T G L + Y A + + + K + L +
Sbjct: 143 NFIPADGRRFVSQTTGNLYIAKTEASDLGNYSCFATSHIDFITKSVFSKFSQLSLAAEDA 202
Query: 256 --------------------RVNRLSCFAEGSPLPSVFWTQ-EGSQVLMFPGNAYGHLHV 294
++ L CFA G+P+P + W + +GSQ + +
Sbjct: 203 RQYAPSIKAKFPADTYALTGQMVTLECFAFGNPVPQIKWRKLDGSQTSKW---------L 253
Query: 295 TQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVR 327
+ E L IQ V ED G + C A ++ G T +
Sbjct: 254 SSEPLLHIQNVDFEDEGTYECEAENIKGRDTYQ 286
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 35/80 (43%)
Query: 79 SDATVLSGSVVEFVCRVGGDPLPTILWRRDDGKMPTGRAKILDDRSLQIENVGPQDEGLY 138
+D GS + + C G P P + W RD + + + L+ + +D G+Y
Sbjct: 302 TDTEADIGSDLRWSCVASGKPRPAVRWLRDGQPLASQNRIEVSGGELRFSKLVLEDSGMY 361
Query: 139 ICDVENLVGSISLRASLTVH 158
C EN G++ A LTV
Sbjct: 362 QCVAENKHGTVYASAELTVQ 381
Score = 38.5 bits (88), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 48/188 (25%), Positives = 69/188 (36%), Gaps = 42/188 (22%)
Query: 168 PKDTRVASGETALLECGPPKGQPEPTLHWKKNGQFIDLESSKSLDLSRRTLGWLRVRPLY 227
P DT +G+ LEC G P P + W+K LD S+ T WL PL
Sbjct: 214 PADTYALTGQMVTLECFA-FGNPVPQIKWRK------------LDGSQ-TSKWLSSEPLL 259
Query: 228 ------------WNVARPRANLNPRYIGRKMAS-----LLIWNHPRVN-----RLSCFAE 265
+ Y GR + L + + R SC A
Sbjct: 260 HIQNVDFEDEGTYECEAENIKGRDTYQGRIIIHAQPDWLDVITDTEADIGSDLRWSCVAS 319
Query: 266 GSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTT 325
G P P+V W ++G P + + V+ G LR + ED+G + C A + G+
Sbjct: 320 GKPRPAVRWLRDGQ-----PLASQNRIEVSG-GELRFSKLVLEDSGMYQCVAENKHGTVY 373
Query: 326 VRAFLQVR 333
A L V+
Sbjct: 374 ASAELTVQ 381
>pdb|3PXH|A Chain A, Tandem Ig Domains Of Tyrosine Phosphatase Lar
Length = 201
Score = 65.5 bits (158), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 45/143 (31%), Positives = 68/143 (47%), Gaps = 17/143 (11%)
Query: 71 KPFPISEPSDATVLSGSVVEFVCRVGGDPLPTILWRRDDGKMPTGRAKIL--DDRSLQIE 128
KP + P D T LSG V FVC+ G+P P I W + K+ + R +++ DD + +
Sbjct: 7 KPVFVKVPEDQTGLSGGVASFVCQATGEPKPRITWMKKGKKVSSQRFEVIEFDDGAGSVL 66
Query: 129 NVGP----QDEGLYICDVENLVGSISLRASLTVHLLRDD--------FRAEPKDTRVASG 176
+ P +DE +Y C N +G I+ A L+V L +D P+ V G
Sbjct: 67 RIQPLRVQRDEAIYECTATNSLGEINTSAKLSV--LEEDQLPSGFPTIDMGPQLKVVEKG 124
Query: 177 ETALLECGPPKGQPEPTLHWKKN 199
TA + C G P+P + W K+
Sbjct: 125 RTATMLCA-AGGNPDPEISWFKD 146
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 41/92 (44%), Gaps = 6/92 (6%)
Query: 63 LIAKEALIKPFPISE--PSDATVLSGSVVEFVCRVGGDPLPTILWRRD----DGKMPTGR 116
++ ++ L FP + P V G +C GG+P P I W +D D GR
Sbjct: 99 VLEEDQLPSGFPTIDMGPQLKVVEKGRTATMLCAAGGNPDPEISWFKDFLPVDPAASNGR 158
Query: 117 AKILDDRSLQIENVGPQDEGLYICDVENLVGS 148
K L +LQIE+ D+G Y C N G+
Sbjct: 159 IKQLRSGALQIESSEESDQGKYECVATNSAGT 190
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 41/186 (22%), Positives = 74/186 (39%), Gaps = 31/186 (16%)
Query: 164 FRAEPKDTRVASGETALLECGPPKGQPEPTLHWKKNGQFIDLESSKSLDLSRRTLGWLRV 223
F P+D SG A C G+P+P + W K G+ + + + ++ LR+
Sbjct: 10 FVKVPEDQTGLSGGVASFVC-QATGEPKPRITWMKKGKKVSSQRFEVIEFDDGAGSVLRI 68
Query: 224 RPLYWNVARPRA--------NLNPRYIGRKMA------------------SLLIWNHPRV 257
+PL V R A +L K++ L + R
Sbjct: 69 QPL--RVQRDEAIYECTATNSLGEINTSAKLSVLEEDQLPSGFPTIDMGPQLKVVEKGRT 126
Query: 258 NRLSCFAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSA 317
+ C A G+P P + W ++ + + P + G + + G L+I+ ++ D G + C A
Sbjct: 127 ATMLCAAGGNPDPEISWFKDF--LPVDPAASNGRIKQLRSGALQIESSEESDQGKYECVA 184
Query: 318 LSVAGS 323
+ AG+
Sbjct: 185 TNSAGT 190
Score = 32.3 bits (72), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 38/96 (39%), Gaps = 14/96 (14%)
Query: 257 VNRLSCFAEGSPLPSVFWTQEGS-------QVLMFPGNAYGHLHVTQEGTLRIQGVQKED 309
V C A G P P + W ++G +V+ F A L + LR+Q D
Sbjct: 24 VASFVCQATGEPKPRITWMKKGKKVSSQRFEVIEFDDGAGSVLRIQ---PLRVQ----RD 76
Query: 310 AGFFVCSALSVAGSTTVRAFLQVREFCVLPKGTFTL 345
+ C+A + G A L V E LP G T+
Sbjct: 77 EAIYECTATNSLGEINTSAKLSVLEEDQLPSGFPTI 112
>pdb|1QZ1|A Chain A, Crystal Structure Of The Ig 1-2-3 Fragment Of Ncam
Length = 291
Score = 63.9 bits (154), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 71/282 (25%), Positives = 114/282 (40%), Gaps = 29/282 (10%)
Query: 78 PSDATVLSGSVVEFVCRVGGDPL-PTILWRRDDG-KMPTGRAKIL------DDRSLQIEN 129
PS + G F+C+V GD I W +G K+ + +I D +L I N
Sbjct: 9 PSQGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDDDSSTLTIYN 68
Query: 130 VGPQDEGLYICDVENLVGSISLRASLTVHLLRD-DFRAEPKDTRVASGETALLECGPPKG 188
D G+Y C V G+ S A++ V + + F+ P GE A++ C
Sbjct: 69 ANIDDAGIYKCVVTAEDGTQS-EATVNVKIFQKLMFKNAPTPQEFKEGEDAVIVCDVVSS 127
Query: 189 QPEPTLHWKKNGQ---------FIDLESS--------KSLDLSRRTLGWLRVR-PLYWNV 230
P PT+ WK G+ FI L ++ K+ + + R G + R + +
Sbjct: 128 LP-PTIIWKHKGRDVILKKDVRFIVLSNNYLQIRGIKKTDEGTYRCEGRILARGEINFKD 186
Query: 231 ARPRANLNPRYIGRKMASLLIWNHPRVNRLSCFAEGSPLPSVFWTQEGSQVLMFPGNAYG 290
+ N+ P R+ N + L C A+G P P++ WT++G + +
Sbjct: 187 IQVIVNVPPTVQARQSIVNATANLGQSVTLVCDADGFPEPTMSWTKDGEPIENEEEDDEK 246
Query: 291 HLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQV 332
H+ L I+ V K D +VC A + AG L+V
Sbjct: 247 HIFSDDSSELTIRNVDKNDEAEYVCIAENKAGEQDASIHLKV 288
>pdb|3B43|A Chain A, I-band Fragment I65-i70 From Titin
Length = 570
Score = 63.5 bits (153), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 71/292 (24%), Positives = 107/292 (36%), Gaps = 29/292 (9%)
Query: 68 ALIKPFPISEPSDATVLSGSVVEFVCRVGGDPLPTILWRRDDGKMPTGRAKILDDR---- 123
A+ P+ I G + C+V G P I W ++ K+ + A + +
Sbjct: 2 AMEPPYFIEPLEHVEAAIGEPITLQCKVDGTPEIRIAWYKEHTKLRSAPAYKMQFKNNVA 61
Query: 124 SLQIENVGPQDEGLYICDVENLVGSISLRASLTVH--LLRDDFRAEPKDTRVASGETALL 181
SL I V D G Y C EN VG+++ A L + L F + KD G
Sbjct: 62 SLVINKVDHSDVGEYTCKAENSVGAVASSAVLVIKERKLPPSFARKLKDVHETLGFPVAF 121
Query: 182 ECGPPKGQPEPTLHWKKNGQFI--DLESSKSLDLSRRTLGWLRVRPLYWNVARPRANLNP 239
EC +P + W K+G+ + D S + TL L+ + A+ NP
Sbjct: 122 ECRINGSEP-LQVSWYKDGELLKDDANLQTSFIHNVATLQILQTDQSHVGQYNCSAS-NP 179
Query: 240 RYIGRKMASLLIWNHP-----------------RVNRLSCFAEGSPLPSVFWTQEGSQVL 282
A L + H C G+ + W ++ ++
Sbjct: 180 LGTASSSAKLTLSEHEVPPFFDLKPVSVDLALGESGTFKCHVTGTAPIKITWAKDNREIR 239
Query: 283 MFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVRE 334
PG Y V TL + V K DAG + C A +VAG + A L V+E
Sbjct: 240 --PGGNYKMTLVENTATLTVLKVTKGDAGQYTCYASNVAGKDSCSAQLGVQE 289
Score = 52.4 bits (124), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 75/297 (25%), Positives = 122/297 (41%), Gaps = 31/297 (10%)
Query: 63 LIAKEALIKPFPISEPSDATVLSGSVVEFVCRVGG-DPLPTILWR-----RDDGKMPTGR 116
L+ KE + P + D G V F CR+ G +PL ++ +DD + T
Sbjct: 93 LVIKERKLPPSFARKLKDVHETLGFPVAFECRINGSEPLQVSWYKDGELLKDDANLQT-- 150
Query: 117 AKILDDRSLQIENVGPQDEGLYICDVENLVGSISLRASLTV--HLLRDDFRAEPKDTRVA 174
+ I + +LQI G Y C N +G+ S A LT+ H + F +P +A
Sbjct: 151 SFIHNVATLQILQTDQSHVGQYNCSASNPLGTASSSAKLTLSEHEVPPFFDLKPVSVDLA 210
Query: 175 SGETALLECGPPKGQPEPTLHWKKNGQFID---------LESSKSLDLSRRTLGWLRVRP 225
GE+ +C P + W K+ + I +E++ +L + + T G
Sbjct: 211 LGESGTFKCHVTGTAP-IKITWAKDNREIRPGGNYKMTLVENTATLTVLKVTKGDAGQYT 269
Query: 226 LYW-NVA---RPRANLN----PRYIGRKMASLLIWNHPRVNRLSCFAEGSPLPSVFWTQE 277
Y NVA A L PR+I +K+ I R C GSP V W ++
Sbjct: 270 CYASNVAGKDSCSAQLGVQEPPRFI-KKLEPSRIVKQDEHTRYECKIGGSPEIKVLWYKD 328
Query: 278 GSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVRE 334
+++ + + V L + + ED+G + C A + AGS + L+V+E
Sbjct: 329 ETEIQ--ESSKFRMSFVESVAVLEMYNLSVEDSGDYTCEAHNAAGSASSSTSLKVKE 383
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 36/137 (26%), Positives = 57/137 (41%), Gaps = 11/137 (8%)
Query: 71 KPFPISEPSDATVLSGSVVEFVCRVGGDPLPTILWRRDDGKMPTGRA-KILDDR---SLQ 126
KP P+ L G+ V C + G P + W +D ++ +G+ KI+ + S+
Sbjct: 390 KPHPVE------TLKGADVHLECELQGTPPFQVSWHKDKRELRSGKKYKIMSENFLTSIH 443
Query: 127 IENVGPQDEGLYICDVENLVGSISLRASLTVHLLRDDFRAEPKDTRVASGETALLECGPP 186
I NV D G Y C N VGS + S+T+ F + D GE L+
Sbjct: 444 ILNVDSADIGEYQCKASNDVGSDTCVGSITLK-APPRFVKKLSDISTVVGEEVQLQATIE 502
Query: 187 KGQPEPTLHWKKNGQFI 203
+P +K G+ +
Sbjct: 503 GAEPISVAWFKDKGEIV 519
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 60/267 (22%), Positives = 110/267 (41%), Gaps = 30/267 (11%)
Query: 91 FVCRVGGDPLPTILWRRDDGKMPTG---RAKILDDRS-LQIENVGPQDEGLYICDVENLV 146
+ C++GG P +LW +D+ ++ R ++ + L++ N+ +D G Y C+ N
Sbjct: 311 YECKIGGSPEIKVLWYKDETEIQESSKFRMSFVESVAVLEMYNLSVEDSGDYTCEAHNAA 370
Query: 147 GSISLRASLTVHLLRDDFRAEPKDTRVASGETALLECGPPKGQPEPTLHWKKNGQFIDLE 206
GS S SL V FR +P G LEC +G P + W K+ + +L
Sbjct: 371 GSASSSTSLKVK-EPPVFRKKPHPVETLKGADVHLEC-ELQGTPPFQVSWHKDKR--ELR 426
Query: 207 SSKSLDLSRR----TLGWLRVRPLYWNVARPRANLN---------------PRYIGRKMA 247
S K + ++ L V + +A+ + PR++ +K++
Sbjct: 427 SGKKYKIMSENFLTSIHILNVDSADIGEYQCKASNDVGSDTCVGSITLKAPPRFV-KKLS 485
Query: 248 SLLIWNHPRVNRLSCFAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQK 307
+ V +L EG+ SV W ++ +++ N + + TL+ +
Sbjct: 486 DISTVVGEEV-QLQATIEGAEPISVAWFKDKGEIVRESDNIWIS-YSENIATLQFSRAEP 543
Query: 308 EDAGFFVCSALSVAGSTTVRAFLQVRE 334
+AG + C + AG+ A L V E
Sbjct: 544 ANAGKYTCQIKNEAGTQECFATLSVLE 570
Score = 38.9 bits (89), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 43/152 (28%), Positives = 58/152 (38%), Gaps = 6/152 (3%)
Query: 62 KLIAKEALIKPFPISEPSDATVLSGSVVEFVCRVGGDPLPTILWRRDDGKM-PTGRAK-- 118
KL E + PF +P + G F C V G I W +D+ ++ P G K
Sbjct: 188 KLTLSEHEVPPFFDLKPVSVDLALGESGTFKCHVTGTAPIKITWAKDNREIRPGGNYKMT 247
Query: 119 -ILDDRSLQIENVGPQDEGLYICDVENLVGSISLRASLTVHLLRDDFRAEPKDTRVASGE 177
+ + +L + V D G Y C N+ G S A L V + V E
Sbjct: 248 LVENTATLTVLKVTKGDAGQYTCYASNVAGKDSCSAQLGVQEPPRFIKKLEPSRIVKQDE 307
Query: 178 TALLECGPPKGQPEPTLHWKKNGQFIDLESSK 209
EC G PE + W K+ I ESSK
Sbjct: 308 HTRYEC-KIGGSPEIKVLWYKDETEIQ-ESSK 337
Score = 33.1 bits (74), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 22/91 (24%), Positives = 39/91 (42%), Gaps = 5/91 (5%)
Query: 72 PFPISEPSDATVLSGSVVEFVCRVGGDPLPTILWRRDDGKMPTGRAKILDDRS-----LQ 126
P + + SD + + G V+ + G ++ W +D G++ I S LQ
Sbjct: 478 PRFVKKLSDISTVVGEEVQLQATIEGAEPISVAWFKDKGEIVRESDNIWISYSENIATLQ 537
Query: 127 IENVGPQDEGLYICDVENLVGSISLRASLTV 157
P + G Y C ++N G+ A+L+V
Sbjct: 538 FSRAEPANAGKYTCQIKNEAGTQECFATLSV 568
>pdb|2YD5|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human
Receptor Protein Tyrosine Phosphatase Lar
pdb|2YD8|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human
Receptor Protein Tyrosine Phosphatase Lar In Complex
With Sucrose Octasulphate
Length = 214
Score = 62.4 bits (150), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 45/141 (31%), Positives = 67/141 (47%), Gaps = 13/141 (9%)
Query: 71 KPFPISEPSDATVLSGSVVEFVCRVGGDPLPTILWRRDDGKMPTGRAKIL--DDRSLQIE 128
KP I P D T LSG V FVC+ G+P P I W + K+ + R +++ DD + +
Sbjct: 6 KPVFIKVPEDQTGLSGGVASFVCQATGEPKPRITWMKKGKKVSSQRFEVIEFDDGAGSVL 65
Query: 129 NVGP----QDEGLYICDVENLVGSISLRASLTV---HLLRDDFRA---EPKDTRVASGET 178
+ P +DE +Y C N +G I+ A L+V L F + P+ V T
Sbjct: 66 RIQPLRVQRDEAIYECTATNSLGEINTSAKLSVLEEEQLPPGFPSIDMGPQLKVVEKART 125
Query: 179 ALLECGPPKGQPEPTLHWKKN 199
A + C G P+P + W K+
Sbjct: 126 ATMLCA-AGGNPDPEISWFKD 145
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 41/182 (22%), Positives = 72/182 (39%), Gaps = 31/182 (17%)
Query: 168 PKDTRVASGETALLECGPPKGQPEPTLHWKKNGQFIDLESSKSLDLSRRTLGWLRVRPLY 227
P+D SG A C G+P+P + W K G+ + + + ++ LR++PL
Sbjct: 13 PEDQTGLSGGVASFVC-QATGEPKPRITWMKKGKKVSSQRFEVIEFDDGAGSVLRIQPL- 70
Query: 228 WNVARPRA-------------------------NLNPRYIGRKMA-SLLIWNHPRVNRLS 261
V R A L P + M L + R +
Sbjct: 71 -RVQRDEAIYECTATNSLGEINTSAKLSVLEEEQLPPGFPSIDMGPQLKVVEKARTATML 129
Query: 262 CFAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVA 321
C A G+P P + W ++ + + P + G + + G L+I+ ++ D G + C A + A
Sbjct: 130 CAAGGNPDPEISWFKDF--LPVDPATSNGRIKQLRSGALQIESSEESDQGKYECVATNSA 187
Query: 322 GS 323
G+
Sbjct: 188 GT 189
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 34/106 (32%), Positives = 47/106 (44%), Gaps = 7/106 (6%)
Query: 63 LIAKEALIKPFPISE--PSDATVLSGSVVEFVCRVGGDPLPTILWRRD----DGKMPTGR 116
++ +E L FP + P V +C GG+P P I W +D D GR
Sbjct: 98 VLEEEQLPPGFPSIDMGPQLKVVEKARTATMLCAAGGNPDPEISWFKDFLPVDPATSNGR 157
Query: 117 AKILDDRSLQIENVGPQDEGLYICDVENLVGS-ISLRASLTVHLLR 161
K L +LQIE+ D+G Y C N G+ S A+L V + R
Sbjct: 158 IKQLRSGALQIESSEESDQGKYECVATNSAGTRYSAPANLYVRVRR 203
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 36/92 (39%), Gaps = 14/92 (15%)
Query: 257 VNRLSCFAEGSPLPSVFWTQEGS-------QVLMFPGNAYGHLHVTQEGTLRIQGVQKED 309
V C A G P P + W ++G +V+ F A L + LR+Q D
Sbjct: 23 VASFVCQATGEPKPRITWMKKGKKVSSQRFEVIEFDDGAGSVLRIQ---PLRVQ----RD 75
Query: 310 AGFFVCSALSVAGSTTVRAFLQVREFCVLPKG 341
+ C+A + G A L V E LP G
Sbjct: 76 EAIYECTATNSLGEINTSAKLSVLEEEQLPPG 107
>pdb|2YD4|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of
Chicken Receptor Protein Tyrosine Phosphatase Sigma
Length = 210
Score = 62.0 bits (149), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 48/153 (31%), Positives = 76/153 (49%), Gaps = 19/153 (12%)
Query: 72 PFPISEPSDATVLSGSVVEFVCRVGGDPLPTILWRRDDGKMPTGRAKILD-DRS----LQ 126
P I +P D +SG V FVC+ GDP P + W + K+ + R + ++ D S L+
Sbjct: 7 PVFIKKPVDQIGVSGGVASFVCQATGDPKPRVTWNKKGKKVNSQRFETIEFDESAGAVLR 66
Query: 127 IENV-GPQDEGLYICDVENLVGSISLRASLTVHLLRDD--------FRAEPKDTRVASGE 177
I+ + P+DE +Y C +N G +++ A LTV LR+D P+ V
Sbjct: 67 IQPLRTPRDENIYECVAQNPHGEVTVHAKLTV--LREDQLPPGFPNIDMGPQLKVVERTR 124
Query: 178 TALLECGPPKGQPEPTLHWKKNGQFIDLESSKS 210
TA + C G P+P + W K+ F+ ++ S S
Sbjct: 125 TATMLCA-ASGNPDPEITWFKD--FLPVDPSTS 154
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 42/183 (22%), Positives = 74/183 (40%), Gaps = 27/183 (14%)
Query: 164 FRAEPKDTRVASGETALLECGPPKGQPEPTLHWKKNGQFIDLESSKSLDLSRRTLGWLRV 223
F +P D SG A C G P+P + W K G+ ++ + ++++ LR+
Sbjct: 9 FIKKPVDQIGVSGGVASFVCQA-TGDPKPRVTWNKKGKKVNSQRFETIEFDESAGAVLRI 67
Query: 224 RPL--------YWNVARP---------------RANLNPRYIGRKMA-SLLIWNHPRVNR 259
+PL Y VA+ L P + M L + R
Sbjct: 68 QPLRTPRDENIYECVAQNPHGEVTVHAKLTVLREDQLPPGFPNIDMGPQLKVVERTRTAT 127
Query: 260 LSCFAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALS 319
+ C A G+P P + W ++ + + P + G + + G L+I+ ++ D G + C A +
Sbjct: 128 MLCAASGNPDPEITWFKDF--LPVDPSTSNGRIKQLRSGGLQIESSEETDQGKYECVASN 185
Query: 320 VAG 322
AG
Sbjct: 186 SAG 188
Score = 38.9 bits (89), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 27/61 (44%), Gaps = 4/61 (6%)
Query: 91 FVCRVGGDPLPTILWRRD----DGKMPTGRAKILDDRSLQIENVGPQDEGLYICDVENLV 146
+C G+P P I W +D D GR K L LQIE+ D+G Y C N
Sbjct: 128 MLCAASGNPDPEITWFKDFLPVDPSTSNGRIKQLRSGGLQIESSEETDQGKYECVASNSA 187
Query: 147 G 147
G
Sbjct: 188 G 188
Score = 31.2 bits (69), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 36/88 (40%), Gaps = 6/88 (6%)
Query: 257 VNRLSCFAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEG--TLRIQGVQK-EDAGFF 313
V C A G P P V W ++G +V + + + LRIQ ++ D +
Sbjct: 23 VASFVCQATGDPKPRVTWNKKGKKVN---SQRFETIEFDESAGAVLRIQPLRTPRDENIY 79
Query: 314 VCSALSVAGSTTVRAFLQVREFCVLPKG 341
C A + G TV A L V LP G
Sbjct: 80 ECVAQNPHGEVTVHAKLTVLREDQLPPG 107
>pdb|2OM5|A Chain A, N-Terminal Fragment Of Human Tax1
Length = 381
Score = 59.3 bits (142), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 37/124 (29%), Positives = 59/124 (47%), Gaps = 4/124 (3%)
Query: 78 PSDATVLSGSVVEFVCRVGGDPLPTILWRRDDGKMPTGRAKILDDRSLQIENVGPQDEGL 137
P++ L G V C G+P+P I WR+ DG + + +LQI +V +DEG
Sbjct: 213 PAETYALVGQQVTLECFAFGNPVPRIKWRKVDGSLSPQWTTA--EPTLQIPSVSFEDEGT 270
Query: 138 YICDVENLVGSISLRASLTVHLLRDDFRAEPKDTRVASGETALLECGPPKGQPEPTLHWK 197
Y C+ EN G +++ + V + ++ DT G C G+P PT+ W
Sbjct: 271 YECEAENSKGRDTVQGRIIVQ-AQPEWLKVISDTEADIGSNLRWGCA-AAGKPRPTVRWL 328
Query: 198 KNGQ 201
+NG+
Sbjct: 329 RNGE 332
Score = 58.9 bits (141), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 64/278 (23%), Positives = 106/278 (38%), Gaps = 43/278 (15%)
Query: 89 VEFVCRVGGDPLPTILWRRDDGKM---PTGRAKILDDRSLQIENVGPQDEGLYICDVENL 145
V CR P T W+ + +M P R +++ + + QD G+Y C N
Sbjct: 24 VLLACRARASPPATYRWKMNGTEMKLEPGSRHQLVGGNLVIMNPTKAQDAGVYQCLASNP 83
Query: 146 VGSISLRASLTVHLLRDDFRAEPKD-TRVASGETALLECGPPKGQPEPTLHWKKNGQFID 204
VG++ R ++ +F E +D + G +L C PP P + W N +F +
Sbjct: 84 VGTVVSREAILRFGFLQEFSKEERDPVKAHEGWGVMLPCNPPAHYPGLSYRWLLN-EFPN 142
Query: 205 LESSKSLDLSRRTLGWLRVRPL-------YWNVARPRANLNPRYIGRKMASLLIWNH--- 254
+ +T G L + Y +A + + + + K A L +
Sbjct: 143 FIPTDGRHFVSQTTGNLYIARTNASDLGNYSCLATSHMDFSTKSVFSKFAQLNLAAEDTR 202
Query: 255 ---PRVN---------------RLSCFAEGSPLPSVFWTQ-EGSQVLMFPGNAYGHLHVT 295
P + L CFA G+P+P + W + +GS + T
Sbjct: 203 LFAPSIKARFPAETYALVGQQVTLECFAFGNPVPRIKWRKVDGSLSPQW---------TT 253
Query: 296 QEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVR 333
E TL+I V ED G + C A + G TV+ + V+
Sbjct: 254 AEPTLQIPSVSFEDEGTYECEAENSKGRDTVQGRIIVQ 291
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 38/81 (46%), Gaps = 2/81 (2%)
Query: 79 SDATVLSGSVVEFVCRVGGDPLPTILWRRDDGKMPT-GRAKILDDRSLQIENVGPQDEGL 137
SD GS + + C G P PT+ W R+ + + R ++L L+ + +D G+
Sbjct: 301 SDTEADIGSNLRWGCAAAGKPRPTVRWLRNGEPLASQNRVEVLAG-DLRFSKLSLEDSGM 359
Query: 138 YICDVENLVGSISLRASLTVH 158
Y C EN G+I A L V
Sbjct: 360 YQCVAENKHGTIYASAELAVQ 380
Score = 33.5 bits (75), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 33/75 (44%), Gaps = 6/75 (8%)
Query: 259 RLSCFAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSAL 318
R C A G P P+V W + G P + + V G LR + ED+G + C A
Sbjct: 312 RWGCAAAGKPRPTVRWLRNGE-----PLASQNRVEVLA-GDLRFSKLSLEDSGMYQCVAE 365
Query: 319 SVAGSTTVRAFLQVR 333
+ G+ A L V+
Sbjct: 366 NKHGTIYASAELAVQ 380
>pdb|3PUC|A Chain A, Atomic Resolution Structure Of Titin Domain M7
Length = 99
Score = 58.9 bits (141), Expect = 9e-09, Method: Composition-based stats.
Identities = 35/92 (38%), Positives = 50/92 (54%), Gaps = 6/92 (6%)
Query: 71 KPFPISEPSDATVLSGSVVEFVCRVGGDPLPTILWRRDDGKMPT--GRAKILDDRS---L 125
KP ++ D TV S SV +F + G+P PT +W + DGK T G+ K+ +D+ L
Sbjct: 6 KPVIVTGLQDTTVSSDSVAKFAVKATGEPRPTAIWTK-DGKAITQGGKYKLSEDKGGFFL 64
Query: 126 QIENVGPQDEGLYICDVENLVGSISLRASLTV 157
+I D GLY C V+N GS+S LT+
Sbjct: 65 EIHKTDTSDSGLYTCTVKNSAGSVSSSCKLTI 96
Score = 32.7 bits (73), Expect = 0.56, Method: Composition-based stats.
Identities = 19/77 (24%), Positives = 32/77 (41%), Gaps = 2/77 (2%)
Query: 257 VNRLSCFAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCS 316
V + + A G P P+ WT++G + G Y L I D+G + C+
Sbjct: 23 VAKFAVKATGEPRPTAIWTKDGKAITQ--GGKYKLSEDKGGFFLEIHKTDTSDSGLYTCT 80
Query: 317 ALSVAGSTTVRAFLQVR 333
+ AGS + L ++
Sbjct: 81 VKNSAGSVSSSCKLTIK 97
>pdb|3PXJ|A Chain A, Tandem Ig Repeats Of Dlar
pdb|3PXJ|B Chain B, Tandem Ig Repeats Of Dlar
pdb|3PXJ|C Chain C, Tandem Ig Repeats Of Dlar
pdb|3PXJ|D Chain D, Tandem Ig Repeats Of Dlar
Length = 210
Score = 58.2 bits (139), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 48/153 (31%), Positives = 74/153 (48%), Gaps = 17/153 (11%)
Query: 72 PFPISEPSDATVLSGSVVEFVCRVGGDPLPTILWRRDDGKMPTG---RAKILDDRS---- 124
P I +P + V G V F C GDP P+I+WR+ +GK +G R +L+
Sbjct: 9 PEIIRKPQNQGVRVGGVASFYCAARGDPPPSIVWRK-NGKKVSGTQSRYTVLEQPGGISI 67
Query: 125 LQIENV-GPQDEGLYICDVENLVG-SISLRASLTVHLLRDDFRAEPKDTR------VASG 176
L+IE V +D+ Y C EN VG ++S A+LT++ P T+ + G
Sbjct: 68 LRIEPVRAGRDDAPYECVAENGVGDAVSADATLTIYEGDKTPAGFPVITQGPGTRVIEVG 127
Query: 177 ETALLECGPPKGQPEPTLHWKKNGQFIDLESSK 209
T L+ C G P P ++W KN +D+ + +
Sbjct: 128 HTVLMTC-KAIGNPTPNIYWIKNQTKVDMSNPR 159
Score = 46.2 bits (108), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 30/93 (32%), Positives = 45/93 (48%), Gaps = 4/93 (4%)
Query: 73 FPI--SEPSDATVLSGSVVEFVCRVGGDPLPTILWRRDDGKMPTGRAKI-LDDRSLQIEN 129
FP+ P + G V C+ G+P P I W ++ K+ + L D LQIEN
Sbjct: 112 FPVITQGPGTRVIEVGHTVLMTCKAIGNPTPNIYWIKNQTKVDMSNPRYSLKDGFLQIEN 171
Query: 130 VGPQDEGLYICDVENLVGSISLRAS-LTVHLLR 161
+D+G Y C EN +G+ +A+ L V + R
Sbjct: 172 SREEDQGKYECVAENSMGTEHSKATNLYVKVRR 204
Score = 42.7 bits (99), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 43/196 (21%), Positives = 87/196 (44%), Gaps = 35/196 (17%)
Query: 167 EPKDTRVASGETALLECGPPKGQPEPTLHWKKNGQFIDLESSKSLDLSR-RTLGWLRVRP 225
+P++ V G A C +G P P++ W+KNG+ + S+ L + + LR+ P
Sbjct: 14 KPQNQGVRVGGVASFYCAA-RGDPPPSIVWRKNGKKVSGTQSRYTVLEQPGGISILRIEP 72
Query: 226 LYWNVA-RPRANLNPRYIGRKM---ASLLIWN-------HPRVNR--------------L 260
+ P + +G + A+L I+ P + + +
Sbjct: 73 VRAGRDDAPYECVAENGVGDAVSADATLTIYEGDKTPAGFPVITQGPGTRVIEVGHTVLM 132
Query: 261 SCFAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSV 320
+C A G+P P+++W + ++V M + ++G L+I+ ++ED G + C A +
Sbjct: 133 TCKAIGNPTPNIYWIKNQTKVDMS-----NPRYSLKDGFLQIENSREEDQGKYECVAENS 187
Query: 321 AGSTTVRA---FLQVR 333
G+ +A +++VR
Sbjct: 188 MGTEHSKATNLYVKVR 203
Score = 30.0 bits (66), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 39/90 (43%), Gaps = 8/90 (8%)
Query: 257 VNRLSCFAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEG---TLRIQGVQ--KEDAG 311
V C A G P PS+ W + G +V G + + Q G LRI+ V+ ++DA
Sbjct: 25 VASFYCAARGDPPPSIVWRKNGKKVS---GTQSRYTVLEQPGGISILRIEPVRAGRDDAP 81
Query: 312 FFVCSALSVAGSTTVRAFLQVREFCVLPKG 341
+ + V + + A L + E P G
Sbjct: 82 YECVAENGVGDAVSADATLTIYEGDKTPAG 111
>pdb|2YD1|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of
Drosophila Receptor Protein Tyrosine Phosphatase Dlar
Length = 212
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 48/153 (31%), Positives = 74/153 (48%), Gaps = 17/153 (11%)
Query: 72 PFPISEPSDATVLSGSVVEFVCRVGGDPLPTILWRRDDGKMPTG---RAKILDDRS---- 124
P I +P + V G V F C GDP P+I+WR+ +GK +G R +L+
Sbjct: 7 PEIIRKPQNQGVRVGGVASFYCAARGDPPPSIVWRK-NGKKVSGTQSRYTVLEQPGGISI 65
Query: 125 LQIENV-GPQDEGLYICDVENLVG-SISLRASLTVHLLRDDFRAEPKDTR------VASG 176
L+IE V +D+ Y C EN VG ++S A+LT++ P T+ + G
Sbjct: 66 LRIEPVRAGRDDAPYECVAENGVGDAVSADATLTIYEGDKTPAGFPVITQGPGTRVIEVG 125
Query: 177 ETALLECGPPKGQPEPTLHWKKNGQFIDLESSK 209
T L+ C G P P ++W KN +D+ + +
Sbjct: 126 HTVLMTC-KAIGNPTPNIYWIKNQTKVDMSNPR 157
Score = 46.2 bits (108), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 30/93 (32%), Positives = 45/93 (48%), Gaps = 4/93 (4%)
Query: 73 FPI--SEPSDATVLSGSVVEFVCRVGGDPLPTILWRRDDGKMPTGRAKI-LDDRSLQIEN 129
FP+ P + G V C+ G+P P I W ++ K+ + L D LQIEN
Sbjct: 110 FPVITQGPGTRVIEVGHTVLMTCKAIGNPTPNIYWIKNQTKVDMSNPRYSLKDGFLQIEN 169
Query: 130 VGPQDEGLYICDVENLVGSISLRAS-LTVHLLR 161
+D+G Y C EN +G+ +A+ L V + R
Sbjct: 170 SREEDQGKYECVAENSMGTEHSKATNLYVKVRR 202
Score = 42.7 bits (99), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 43/196 (21%), Positives = 87/196 (44%), Gaps = 35/196 (17%)
Query: 167 EPKDTRVASGETALLECGPPKGQPEPTLHWKKNGQFIDLESSKSLDLSR-RTLGWLRVRP 225
+P++ V G A C +G P P++ W+KNG+ + S+ L + + LR+ P
Sbjct: 12 KPQNQGVRVGGVASFYCAA-RGDPPPSIVWRKNGKKVSGTQSRYTVLEQPGGISILRIEP 70
Query: 226 LYWNVAR-PRANLNPRYIGRKM---ASLLIWN-------HPRVNR--------------L 260
+ P + +G + A+L I+ P + + +
Sbjct: 71 VRAGRDDAPYECVAENGVGDAVSADATLTIYEGDKTPAGFPVITQGPGTRVIEVGHTVLM 130
Query: 261 SCFAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSV 320
+C A G+P P+++W + ++V M + ++G L+I+ ++ED G + C A +
Sbjct: 131 TCKAIGNPTPNIYWIKNQTKVDMS-----NPRYSLKDGFLQIENSREEDQGKYECVAENS 185
Query: 321 AGSTTVRA---FLQVR 333
G+ +A +++VR
Sbjct: 186 MGTEHSKATNLYVKVR 201
Score = 29.6 bits (65), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 39/90 (43%), Gaps = 8/90 (8%)
Query: 257 VNRLSCFAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEG---TLRIQGVQ--KEDAG 311
V C A G P PS+ W + G +V G + + Q G LRI+ V+ ++DA
Sbjct: 23 VASFYCAARGDPPPSIVWRKNGKKV---SGTQSRYTVLEQPGGISILRIEPVRAGRDDAP 79
Query: 312 FFVCSALSVAGSTTVRAFLQVREFCVLPKG 341
+ + V + + A L + E P G
Sbjct: 80 YECVAENGVGDAVSADATLTIYEGDKTPAG 109
>pdb|3K0W|A Chain A, Crystal Structure Of The Tandem Ig-Like C2-Type 2 Domains
Of The Human Mucosa-Associated Lymphoid Tissue Lymphoma
Translocation Protein 1
Length = 218
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 41/166 (24%), Positives = 64/166 (38%), Gaps = 26/166 (15%)
Query: 78 PSDATVLSGSVVEFVCRVGGDPLPTILWRRDDGKMPTGRAKILDDRSLQIENVGPQDEGL 137
P VL+G V+ CR G P W + + ++P G L ++ + +D G
Sbjct: 25 PESKAVLAGQFVKLCCRATGHPFVQYQWFKMNKEIPNGNTSELIFNAVHV-----KDAGF 79
Query: 138 YICDV-ENLVGSISLRASLTVHLLRDDFR--------------AEPKDTRVASGETALLE 182
Y+C V N S + L V + + F+ EP ++ G T +L+
Sbjct: 80 YVCRVNNNFTFEFSQWSQLDVCDIPESFQRSVDGVSESKLQICVEPTSQKLMPGSTLVLQ 139
Query: 183 CGPPKGQPEPTLHWKKNGQFIDLESSK-----SLDLSRRTLGWLRV 223
C G P P W KN + E+ K +DL + W V
Sbjct: 140 C-VAVGSPIPHYQWFKNELPLTHETKKLYMVPYVDLEHQGTYWCHV 184
>pdb|3S97|C Chain C, Ptprz Cntn1 Complex
pdb|3S97|D Chain D, Ptprz Cntn1 Complex
Length = 201
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 45/95 (47%), Gaps = 3/95 (3%)
Query: 67 EALIKPFP---ISEPSDATVLSGSVVEFVCRVGGDPLPTILWRRDDGKMPTGRAKILDDR 123
E KP+P + + D L G V C G+P+P I WR+ MP+
Sbjct: 106 ERTTKPYPADIVVQFKDVYALMGQNVTLECFALGNPVPDIRWRKVLEPMPSTAEISTSGA 165
Query: 124 SLQIENVGPQDEGLYICDVENLVGSISLRASLTVH 158
L+I N+ +DEG+Y C+ EN+ G +A + V
Sbjct: 166 VLKIFNIQLEDEGIYECEAENIRGKDKHQARIYVQ 200
Score = 37.7 bits (86), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 37/74 (50%), Gaps = 6/74 (8%)
Query: 260 LSCFAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALS 319
L CFA G+P+P + W + ++ P + + T L+I +Q ED G + C A +
Sbjct: 133 LECFALGNPVPDIRWRK-----VLEPMPSTAEIS-TSGAVLKIFNIQLEDEGIYECEAEN 186
Query: 320 VAGSTTVRAFLQVR 333
+ G +A + V+
Sbjct: 187 IRGKDKHQARIYVQ 200
>pdb|2ID5|A Chain A, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|B Chain B, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|C Chain C, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|D Chain D, Crystal Structure Of The Lingo-1 Ectodomain
Length = 477
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 37/76 (48%), Gaps = 4/76 (5%)
Query: 86 GSVVEFVCRVGGDPLPTILW----RRDDGKMPTGRAKILDDRSLQIENVGPQDEGLYICD 141
G V+FVCR GDP P ILW + GR + D +L++ QD G Y+C
Sbjct: 400 GHTVQFVCRADGDPPPAILWLSPRKHLVSAKSNGRLTVFPDGTLEVRYAQVQDNGTYLCI 459
Query: 142 VENLVGSISLRASLTV 157
N G+ S+ A L V
Sbjct: 460 AANAGGNDSMPAHLHV 475
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 38/72 (52%), Gaps = 2/72 (2%)
Query: 262 CFAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVA 321
C A+G P P++ W ++ N G L V +GTL ++ Q +D G ++C A +
Sbjct: 407 CRADGDPPPAILWLSPRKHLVSAKSN--GRLTVFPDGTLEVRYAQVQDNGTYLCIAANAG 464
Query: 322 GSTTVRAFLQVR 333
G+ ++ A L VR
Sbjct: 465 GNDSMPAHLHVR 476
>pdb|2XY1|A Chain A, Crystal Structure Of Ncam2 Ig3-4
Length = 192
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 40/136 (29%), Positives = 59/136 (43%), Gaps = 6/136 (4%)
Query: 80 DATVLSGSVVEFVCRVGGDPLPTILWRRDDGKMPTGRAKIL--DDRSLQIENVGPQDEGL 137
+AT G + F CR G P P I W R+ + IL + L + N+ D G
Sbjct: 13 NATAERGEEMTFSCRASGSPEPAISWFRNGKLIEENEKYILKGSNTELTVRNIINSDGGP 72
Query: 138 YICDVENLVGSISLRASLTVHLLRDDFRAEPKDTRVASGETALLECGPPKGQPEPTLHWK 197
Y+C N G +A L V ++ +T +G+ L+ C +G+P P + WK
Sbjct: 73 YVCRATNKAGEDEKQAFLQV-FVQPHIIQLKNETTYENGQVTLV-C-DAEGEPIPEITWK 129
Query: 198 KN-GQFIDLESSKSLD 212
+ F E KSLD
Sbjct: 130 RAVDGFTFTEGDKSLD 145
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 46/178 (25%), Positives = 70/178 (39%), Gaps = 24/178 (13%)
Query: 176 GETALLECGPPKGQPEPTLHWKKNGQFIDLESSKSLDLSRRTLGWLRVRPLYWNVARPRA 235
GE C G PEP + W +NG+ I+ E+ K + T L VR + + P
Sbjct: 19 GEEMTFSC-RASGSPEPAISWFRNGKLIE-ENEKYILKGSNT--ELTVRNIINSDGGPYV 74
Query: 236 NLNPRYIGR--KMASLLIWNHPRVNRLS-------------CFAEGSPLPSVFWTQEGSQ 280
G K A L ++ P + +L C AEG P+P + W +
Sbjct: 75 CRATNKAGEDEKQAFLQVFVQPHIIQLKNETTYENGQVTLVCDAEGEPIPEITWKRAVDG 134
Query: 281 VLMFPGNAY--GHLHVT-QEG--TLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVR 333
G+ G + V Q G +L I+ V+ D+G + C A S G +L +
Sbjct: 135 FTFTEGDKSLDGRIEVKGQHGSSSLHIKDVKLSDSGRYDCEAASRIGGHQKSMYLDIE 192
Score = 42.7 bits (99), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 43/92 (46%), Gaps = 12/92 (13%)
Query: 67 EALIKPFPISEPSDATVLSGSVVEFVCRVGGDPLPTILWRRD-DGKMPTGRAKILDDR-- 123
+ ++P I ++ T +G V VC G+P+P I W+R DG T K LD R
Sbjct: 91 QVFVQPHIIQLKNETTYENGQVT-LVCDAEGEPIPEITWKRAVDGFTFTEGDKSLDGRIE 149
Query: 124 --------SLQIENVGPQDEGLYICDVENLVG 147
SL I++V D G Y C+ + +G
Sbjct: 150 VKGQHGSSSLHIKDVKLSDSGRYDCEAASRIG 181
>pdb|2EDJ|A Chain A, Solution Structure Of The Fifth Ig-Like Domain From Human
Roundabout Homolog 2
Length = 100
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 40/75 (53%), Gaps = 4/75 (5%)
Query: 260 LSCFAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALS 319
L C A G PLP + W +EG FPG + ++GTL+I+ ++ D G + C A S
Sbjct: 28 LKCKATGDPLPVISWLKEG---FTFPGRDP-RATIQEQGTLQIKNLRISDTGTYTCVATS 83
Query: 320 VAGSTTVRAFLQVRE 334
+G T+ A L V E
Sbjct: 84 SSGETSWSAVLDVTE 98
Score = 45.8 bits (107), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 40/88 (45%), Gaps = 2/88 (2%)
Query: 72 PFPISEPSDATVLSGSVVEFVCRVGGDPLPTILWRRDDGKMP--TGRAKILDDRSLQIEN 129
P + P++ T+ C+ GDPLP I W ++ P RA I + +LQI+N
Sbjct: 9 PIILQGPANQTLAVDGTALLKCKATGDPLPVISWLKEGFTFPGRDPRATIQEQGTLQIKN 68
Query: 130 VGPQDEGLYICDVENLVGSISLRASLTV 157
+ D G Y C + G S A L V
Sbjct: 69 LRISDTGTYTCVATSSSGETSWSAVLDV 96
>pdb|1BPV|A Chain A, Titin Module A71 From Human Cardiac Muscle, Nmr, 50
Structures
Length = 112
Score = 50.1 bits (118), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 39/93 (41%), Positives = 46/93 (49%), Gaps = 7/93 (7%)
Query: 412 PPAAPVILNTTRGSVTLGWGEPEPRGGGVAPVIGYTVEYFSSDLQTG-WVVAAH-RITST 469
PP PV LN TR +VTL W +PE GG + Y VE DL G W+ A I
Sbjct: 13 PPGKPVPLNITRHTVTLKWAKPEYTGG--FKITSYIVE--KRDLPNGRWLKANFSNILEN 68
Query: 470 SITVSDLKPDTSYMFIVRAENSHGLGIPSPVSP 502
TVS L D +Y F V A+N+ G I P P
Sbjct: 69 EFTVSGLTEDAAYEFRVIAKNAAG-AISPPSEP 100
>pdb|3OJM|B Chain B, Crystal Structure Of Fgf1 Complexed With The Ectodomain Of
Fgfr2b Harboring P253r Apert Mutation
Length = 231
Score = 49.7 bits (117), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 44/81 (54%), Gaps = 5/81 (6%)
Query: 82 TVLSGSVVEFVCRVGGDPLPTILWRRDDGKMPT----GRAKILDDR-SLQIENVGPQDEG 136
V + + V+F C GG+P+PT+ W ++ + G K+ + SL +E+V P D+G
Sbjct: 30 AVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKG 89
Query: 137 LYICDVENLVGSISLRASLTV 157
Y C VEN GSI+ L V
Sbjct: 90 NYTCVVENEYGSINHTYHLDV 110
Score = 46.6 bits (109), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 33/95 (34%), Positives = 44/95 (46%), Gaps = 15/95 (15%)
Query: 78 PSDATVLSGSVVEFVCRVGGDPLPTILWRRDDGKM-----PTG--RAKIL--------DD 122
P++A+ + G VEFVC+V D P I W + K P G K+L +
Sbjct: 125 PANASTVVGGDVEFVCKVYSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKHSGINSSNA 184
Query: 123 RSLQIENVGPQDEGLYICDVENLVGSISLRASLTV 157
L + NV D G YIC V N +G + A LTV
Sbjct: 185 EVLALFNVTEADAGEYICKVSNYIGQANQSAWLTV 219
Score = 28.9 bits (63), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 18/66 (27%), Positives = 28/66 (42%), Gaps = 10/66 (15%)
Query: 165 RAEPKDTRVASGETALLECGPPKGQPEPTLHWKKNGQFIDLESSKSLDLSRRTLGWLRVR 224
+ E + V + T C P G P PT+ W KNG+ E +G +VR
Sbjct: 23 KMEKRLHAVPAANTVKFRC-PAGGNPMPTMRWLKNGKEFKQE---------HRIGGYKVR 72
Query: 225 PLYWNV 230
+W++
Sbjct: 73 NQHWSL 78
>pdb|1II4|E Chain E, Crystal Structure Of Ser252trp Apert Mutant Fgf Receptor 2
(Fgfr2) In Complex With Fgf2
pdb|1II4|F Chain F, Crystal Structure Of Ser252trp Apert Mutant Fgf Receptor 2
(Fgfr2) In Complex With Fgf2
pdb|1II4|G Chain G, Crystal Structure Of Ser252trp Apert Mutant Fgf Receptor 2
(Fgfr2) In Complex With Fgf2
pdb|1II4|H Chain H, Crystal Structure Of Ser252trp Apert Mutant Fgf Receptor 2
(Fgfr2) In Complex With Fgf2
Length = 220
Score = 49.7 bits (117), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 44/80 (55%), Gaps = 5/80 (6%)
Query: 83 VLSGSVVEFVCRVGGDPLPTILWRRDDGKMPT----GRAKILDDR-SLQIENVGPQDEGL 137
V + + V+F C GG+P+PT+ W ++ + G K+ + SL +E+V P D+G
Sbjct: 23 VPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGN 82
Query: 138 YICDVENLVGSISLRASLTV 157
Y C VEN GSI+ L V
Sbjct: 83 YTCVVENEYGSINHTYHLDV 102
Score = 38.5 bits (88), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 32/97 (32%), Positives = 44/97 (45%), Gaps = 17/97 (17%)
Query: 78 PSDATVLSGSVVEFVCRVGGDPLPTILWRRDDGKM-----PTG--RAKILD-------DR 123
P++A+ + G VEFVC+V D P I W + K P G K+L D+
Sbjct: 117 PANASTVVGGDVEFVCKVYSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKAAGVNTTDK 176
Query: 124 SLQ---IENVGPQDEGLYICDVENLVGSISLRASLTV 157
++ I NV +D G Y C N +G A LTV
Sbjct: 177 EIEVLYIRNVTFEDAGEYTCLAGNSIGISFHSAWLTV 213
Score = 28.9 bits (63), Expect = 10.0, Method: Compositional matrix adjust.
Identities = 18/66 (27%), Positives = 28/66 (42%), Gaps = 10/66 (15%)
Query: 165 RAEPKDTRVASGETALLECGPPKGQPEPTLHWKKNGQFIDLESSKSLDLSRRTLGWLRVR 224
+ E + V + T C P G P PT+ W KNG+ E +G +VR
Sbjct: 15 KMEKRLHAVPAANTVKFRC-PAGGNPMPTMRWLKNGKEFKQE---------HRIGGYKVR 64
Query: 225 PLYWNV 230
+W++
Sbjct: 65 NQHWSL 70
>pdb|1E0O|B Chain B, Crystal Structure Of A Ternary Fgf1-Fgfr2-Heparin Complex
pdb|1E0O|D Chain D, Crystal Structure Of A Ternary Fgf1-Fgfr2-Heparin Complex
Length = 219
Score = 49.7 bits (117), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 44/80 (55%), Gaps = 5/80 (6%)
Query: 83 VLSGSVVEFVCRVGGDPLPTILWRRDDGKMPT----GRAKILDDR-SLQIENVGPQDEGL 137
V + + V+F C GG+P+PT+ W ++ + G K+ + SL +E+V P D+G
Sbjct: 22 VPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGN 81
Query: 138 YICDVENLVGSISLRASLTV 157
Y C VEN GSI+ L V
Sbjct: 82 YTCVVENEYGSINHTYHLDV 101
Score = 38.5 bits (88), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 32/97 (32%), Positives = 44/97 (45%), Gaps = 17/97 (17%)
Query: 78 PSDATVLSGSVVEFVCRVGGDPLPTILWRRDDGKM-----PTG--RAKILD-------DR 123
P++A+ + G VEFVC+V D P I W + K P G K+L D+
Sbjct: 116 PANASTVVGGDVEFVCKVYSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKAAGVNTTDK 175
Query: 124 SLQ---IENVGPQDEGLYICDVENLVGSISLRASLTV 157
++ I NV +D G Y C N +G A LTV
Sbjct: 176 EIEVLYIRNVTFEDAGEYTCLAGNSIGISFHSAWLTV 212
Score = 29.3 bits (64), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 18/66 (27%), Positives = 28/66 (42%), Gaps = 10/66 (15%)
Query: 165 RAEPKDTRVASGETALLECGPPKGQPEPTLHWKKNGQFIDLESSKSLDLSRRTLGWLRVR 224
+ E + V + T C P G P PT+ W KNG+ E +G +VR
Sbjct: 14 KMEKRLHAVPAANTVKFRC-PAGGNPMPTMRWLKNGKEFKQE---------HRIGGYKVR 63
Query: 225 PLYWNV 230
+W++
Sbjct: 64 NQHWSL 69
>pdb|1EV2|E Chain E, Crystal Structure Of Fgf2 In Complex With The
Extracellular Ligand Binding Domain Of Fgf Receptor 2
(Fgfr2)
pdb|1EV2|F Chain F, Crystal Structure Of Fgf2 In Complex With The
Extracellular Ligand Binding Domain Of Fgf Receptor 2
(Fgfr2)
pdb|1EV2|G Chain G, Crystal Structure Of Fgf2 In Complex With The
Extracellular Ligand Binding Domain Of Fgf Receptor 2
(Fgfr2)
pdb|1EV2|H Chain H, Crystal Structure Of Fgf2 In Complex With The
Extracellular Ligand Binding Domain Of Fgf Receptor 2
(Fgfr2)
Length = 220
Score = 49.7 bits (117), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 44/80 (55%), Gaps = 5/80 (6%)
Query: 83 VLSGSVVEFVCRVGGDPLPTILWRRDDGKMPT----GRAKILDDR-SLQIENVGPQDEGL 137
V + + V+F C GG+P+PT+ W ++ + G K+ + SL +E+V P D+G
Sbjct: 23 VPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGN 82
Query: 138 YICDVENLVGSISLRASLTV 157
Y C VEN GSI+ L V
Sbjct: 83 YTCVVENEYGSINHTYHLDV 102
Score = 38.5 bits (88), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 32/97 (32%), Positives = 44/97 (45%), Gaps = 17/97 (17%)
Query: 78 PSDATVLSGSVVEFVCRVGGDPLPTILWRRDDGKM-----PTG--RAKILD-------DR 123
P++A+ + G VEFVC+V D P I W + K P G K+L D+
Sbjct: 117 PANASTVVGGDVEFVCKVYSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKAAGVNTTDK 176
Query: 124 SLQ---IENVGPQDEGLYICDVENLVGSISLRASLTV 157
++ I NV +D G Y C N +G A LTV
Sbjct: 177 EIEVLYIRNVTFEDAGEYTCLAGNSIGISFHSAWLTV 213
Score = 28.9 bits (63), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 18/66 (27%), Positives = 28/66 (42%), Gaps = 10/66 (15%)
Query: 165 RAEPKDTRVASGETALLECGPPKGQPEPTLHWKKNGQFIDLESSKSLDLSRRTLGWLRVR 224
+ E + V + T C P G P PT+ W KNG+ E +G +VR
Sbjct: 15 KMEKRLHAVPAANTVKFRC-PAGGNPMPTMRWLKNGKEFKQE---------HRIGGYKVR 64
Query: 225 PLYWNV 230
+W++
Sbjct: 65 NQHWSL 70
>pdb|1IIL|E Chain E, Crystal Structure Of Pro253arg Apert Mutant Fgf Receptor 2
(Fgfr2) In Complex With Fgf2
pdb|1IIL|F Chain F, Crystal Structure Of Pro253arg Apert Mutant Fgf Receptor 2
(Fgfr2) In Complex With Fgf2
pdb|1IIL|G Chain G, Crystal Structure Of Pro253arg Apert Mutant Fgf Receptor 2
(Fgfr2) In Complex With Fgf2
pdb|1IIL|H Chain H, Crystal Structure Of Pro253arg Apert Mutant Fgf Receptor 2
(Fgfr2) In Complex With Fgf2
Length = 220
Score = 49.7 bits (117), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 44/80 (55%), Gaps = 5/80 (6%)
Query: 83 VLSGSVVEFVCRVGGDPLPTILWRRDDGKMPT----GRAKILDDR-SLQIENVGPQDEGL 137
V + + V+F C GG+P+PT+ W ++ + G K+ + SL +E+V P D+G
Sbjct: 23 VPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGN 82
Query: 138 YICDVENLVGSISLRASLTV 157
Y C VEN GSI+ L V
Sbjct: 83 YTCVVENEYGSINHTYHLDV 102
Score = 38.5 bits (88), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 32/97 (32%), Positives = 44/97 (45%), Gaps = 17/97 (17%)
Query: 78 PSDATVLSGSVVEFVCRVGGDPLPTILWRRDDGKM-----PTG--RAKILD-------DR 123
P++A+ + G VEFVC+V D P I W + K P G K+L D+
Sbjct: 117 PANASTVVGGDVEFVCKVYSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKAAGVNTTDK 176
Query: 124 SLQ---IENVGPQDEGLYICDVENLVGSISLRASLTV 157
++ I NV +D G Y C N +G A LTV
Sbjct: 177 EIEVLYIRNVTFEDAGEYTCLAGNSIGISFHSAWLTV 213
Score = 29.3 bits (64), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 18/66 (27%), Positives = 28/66 (42%), Gaps = 10/66 (15%)
Query: 165 RAEPKDTRVASGETALLECGPPKGQPEPTLHWKKNGQFIDLESSKSLDLSRRTLGWLRVR 224
+ E + V + T C P G P PT+ W KNG+ E +G +VR
Sbjct: 15 KMEKRLHAVPAANTVKFRC-PAGGNPMPTMRWLKNGKEFKQE---------HRIGGYKVR 64
Query: 225 PLYWNV 230
+W++
Sbjct: 65 NQHWSL 70
>pdb|2FDB|P Chain P, Crystal Structure Of Fibroblast Growth Factor (Fgf)8b In
Complex With Fgf Receptor (Fgfr) 2c
pdb|2FDB|R Chain R, Crystal Structure Of Fibroblast Growth Factor (Fgf)8b In
Complex With Fgf Receptor (Fgfr) 2c
Length = 220
Score = 49.7 bits (117), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 44/80 (55%), Gaps = 5/80 (6%)
Query: 83 VLSGSVVEFVCRVGGDPLPTILWRRDDGKMPT----GRAKILDDR-SLQIENVGPQDEGL 137
V + + V+F C GG+P+PT+ W ++ + G K+ + SL +E+V P D+G
Sbjct: 21 VPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGN 80
Query: 138 YICDVENLVGSISLRASLTV 157
Y C VEN GSI+ L V
Sbjct: 81 YTCVVENEYGSINHTYHLDV 100
Score = 38.5 bits (88), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 32/97 (32%), Positives = 44/97 (45%), Gaps = 17/97 (17%)
Query: 78 PSDATVLSGSVVEFVCRVGGDPLPTILWRRDDGKM-----PTG--RAKILD-------DR 123
P++A+ + G VEFVC+V D P I W + K P G K+L D+
Sbjct: 115 PANASTVVGGDVEFVCKVYSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKAAGVNTTDK 174
Query: 124 SLQ---IENVGPQDEGLYICDVENLVGSISLRASLTV 157
++ I NV +D G Y C N +G A LTV
Sbjct: 175 EIEVLYIRNVTFEDAGEYTCLAGNSIGISFHSAWLTV 211
Score = 28.9 bits (63), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 18/66 (27%), Positives = 28/66 (42%), Gaps = 10/66 (15%)
Query: 165 RAEPKDTRVASGETALLECGPPKGQPEPTLHWKKNGQFIDLESSKSLDLSRRTLGWLRVR 224
+ E + V + T C P G P PT+ W KNG+ E +G +VR
Sbjct: 13 KMEKRLHAVPAANTVKFRC-PAGGNPMPTMRWLKNGKEFKQE---------HRIGGYKVR 62
Query: 225 PLYWNV 230
+W++
Sbjct: 63 NQHWSL 68
>pdb|3ZYJ|A Chain A, Netring1 In Complex With Ngl1
pdb|3ZYJ|C Chain C, Netring1 In Complex With Ngl1
Length = 440
Score = 49.7 bits (117), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 42/91 (46%), Gaps = 6/91 (6%)
Query: 72 PFPISEPSDATVLSGSVVEFVCRVGGDPLPTILWRRDDGKMPTG-----RAKILDDRSLQ 126
P + P+D V G E CR L ++ W +G + T R +L D +L
Sbjct: 342 PVIVEPPADLNVTEGMAAELKCR-ASTSLTSVSWITPNGTVMTHGAYKVRIAVLSDGTLN 400
Query: 127 IENVGPQDEGLYICDVENLVGSISLRASLTV 157
NV QD G+Y C V N VG+ + A+L V
Sbjct: 401 FTNVTVQDTGMYTCMVSNSVGNTTASATLNV 431
Score = 34.3 bits (77), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 31/74 (41%), Gaps = 2/74 (2%)
Query: 259 RLSCFAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSAL 318
L C A S L SV W V M G + V +GTL V +D G + C
Sbjct: 360 ELKCRASTS-LTSVSWITPNGTV-MTHGAYKVRIAVLSDGTLNFTNVTVQDTGMYTCMVS 417
Query: 319 SVAGSTTVRAFLQV 332
+ G+TT A L V
Sbjct: 418 NSVGNTTASATLNV 431
>pdb|3OJ2|C Chain C, Crystal Structure Of Fgf1 Complexed With The Ectodomain Of
Fgfr2b Harboring The A172f Pfeiffer Syndrome Mutation
pdb|3OJ2|D Chain D, Crystal Structure Of Fgf1 Complexed With The Ectodomain Of
Fgfr2b Harboring The A172f Pfeiffer Syndrome Mutation
Length = 231
Score = 49.3 bits (116), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 42/76 (55%), Gaps = 5/76 (6%)
Query: 87 SVVEFVCRVGGDPLPTILWRRDDGKMPT----GRAKILDDR-SLQIENVGPQDEGLYICD 141
+ V+F C GG+P+PT+ W ++ + G K+ + SL +E+V P D+G Y C
Sbjct: 35 NTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCV 94
Query: 142 VENLVGSISLRASLTV 157
VEN GSI+ L V
Sbjct: 95 VENEYGSINHTYHLDV 110
Score = 46.6 bits (109), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 33/95 (34%), Positives = 44/95 (46%), Gaps = 15/95 (15%)
Query: 78 PSDATVLSGSVVEFVCRVGGDPLPTILWRRDDGKM-----PTG--RAKIL--------DD 122
P++A+ + G VEFVC+V D P I W + K P G K+L +
Sbjct: 125 PANASTVVGGDVEFVCKVYSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKHSGINSSNA 184
Query: 123 RSLQIENVGPQDEGLYICDVENLVGSISLRASLTV 157
L + NV D G YIC V N +G + A LTV
Sbjct: 185 EVLALFNVTEADAGEYICKVSNYIGQANQSAWLTV 219
>pdb|1FHG|A Chain A, High Resolution Refinement Of Telokin
Length = 154
Score = 49.3 bits (116), Expect = 7e-06, Method: Composition-based stats.
Identities = 29/96 (30%), Positives = 43/96 (44%), Gaps = 5/96 (5%)
Query: 70 IKPFPISEPSDATVLSGSVVEFVCRVGGDPLPTILWRRDDGKMPTGRAKILD-----DRS 124
+KP+ D V+ GS F C+V G P P ++W +DD + R +D + S
Sbjct: 40 VKPYFTKTILDMEVVEGSAARFDCKVEGYPDPEVMWFKDDNPVKESRHFQIDYDEEGNCS 99
Query: 125 LQIENVGPQDEGLYICDVENLVGSISLRASLTVHLL 160
L I V D+ Y C N +G + A L V +
Sbjct: 100 LTISEVCGDDDAKYTCKAVNSLGEATCTAELLVETM 135
Score = 31.2 bits (69), Expect = 2.0, Method: Composition-based stats.
Identities = 22/76 (28%), Positives = 34/76 (44%), Gaps = 5/76 (6%)
Query: 259 RLSCFAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEG--TLRIQGVQKEDAGFFVCS 316
R C EG P P V W ++ + V + + + +EG +L I V +D + C
Sbjct: 60 RFDCKVEGYPDPEVMWFKDDNPV---KESRHFQIDYDEEGNCSLTISEVCGDDDAKYTCK 116
Query: 317 ALSVAGSTTVRAFLQV 332
A++ G T A L V
Sbjct: 117 AVNSLGEATCTAELLV 132
>pdb|1TLK|A Chain A, X-Ray Structure Determination Of Telokin, The C-Terminal
Domain Of Myosin Light Chain Kinase, At 2.8 Angstroms
Resolution
Length = 154
Score = 49.3 bits (116), Expect = 7e-06, Method: Composition-based stats.
Identities = 29/96 (30%), Positives = 43/96 (44%), Gaps = 5/96 (5%)
Query: 70 IKPFPISEPSDATVLSGSVVEFVCRVGGDPLPTILWRRDDGKMPTGRAKILD-----DRS 124
+KP+ D V+ GS F C+V G P P ++W +DD + R +D + S
Sbjct: 40 VKPYFTKTILDMDVVEGSAARFDCKVEGYPDPEVMWFKDDNPVKESRHFQIDYDEEGNCS 99
Query: 125 LQIENVGPQDEGLYICDVENLVGSISLRASLTVHLL 160
L I V D+ Y C N +G + A L V +
Sbjct: 100 LTISEVCGDDDAKYTCKAVNSLGEATCTAELLVETM 135
Score = 31.2 bits (69), Expect = 2.0, Method: Composition-based stats.
Identities = 22/76 (28%), Positives = 34/76 (44%), Gaps = 5/76 (6%)
Query: 259 RLSCFAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEG--TLRIQGVQKEDAGFFVCS 316
R C EG P P V W ++ + V + + + +EG +L I V +D + C
Sbjct: 60 RFDCKVEGYPDPEVMWFKDDNPV---KESRHFQIDYDEEGNCSLTISEVCGDDDAKYTCK 116
Query: 317 ALSVAGSTTVRAFLQV 332
A++ G T A L V
Sbjct: 117 AVNSLGEATCTAELLV 132
>pdb|2EO9|A Chain A, Solution Structure Of The Fifth Ig-Like Domain From Human
Roundabout Homo1
Length = 118
Score = 48.9 bits (115), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 46/78 (58%), Gaps = 4/78 (5%)
Query: 260 LSCFAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALS 319
LSC A GSP+P++ W ++G VL+ ++ + + G L+I+ + D G + C A +
Sbjct: 28 LSCVATGSPVPTILWRKDG--VLVSTQDS--RIKQLENGVLQIRYAKLGDTGRYTCIAST 83
Query: 320 VAGSTTVRAFLQVREFCV 337
+G T A+++V+EF V
Sbjct: 84 PSGEATWSAYIEVQEFGV 101
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 35/83 (42%), Gaps = 2/83 (2%)
Query: 78 PSDATVLSGSVVEFVCRVGGDPLPTILWRRDDGKMPT--GRAKILDDRSLQIENVGPQDE 135
P + TV C G P+PTILWR+D + T R K L++ LQI D
Sbjct: 15 PVNQTVAVDGTFVLSCVATGSPVPTILWRKDGVLVSTQDSRIKQLENGVLQIRYAKLGDT 74
Query: 136 GLYICDVENLVGSISLRASLTVH 158
G Y C G + A + V
Sbjct: 75 GRYTCIASTPSGEATWSAYIEVQ 97
Score = 29.6 bits (65), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 29/61 (47%), Gaps = 4/61 (6%)
Query: 164 FRAEPKDTRVASGETALLECGPPKGQPEPTLHWKKNGQFIDLESSKSLDLSRRTLGWLRV 223
R P + VA T +L C G P PT+ W+K+G + + S+ L G L++
Sbjct: 11 IRQGPVNQTVAVDGTFVLSCVA-TGSPVPTILWRKDGVLVSTQDSRIKQLEN---GVLQI 66
Query: 224 R 224
R
Sbjct: 67 R 67
>pdb|3V2A|R Chain R, Vegfr-2VEGF-A Complex Structure
Length = 772
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 39/81 (48%), Gaps = 2/81 (2%)
Query: 80 DATVLSGSVVEFVCRVGGDPLPTILWRRDDGKMPTGRAKILDD--RSLQIENVGPQDEGL 137
+ T G +E C G+P P I+W +D+ + +L D R+L I V +DEGL
Sbjct: 675 NQTTSIGESIEVSCTASGNPPPQIMWFKDNETLVEDSGIVLKDGNRNLTIRRVRKEDEGL 734
Query: 138 YICDVENLVGSISLRASLTVH 158
Y C +++G + A +
Sbjct: 735 YTCQACSVLGCAKVEAFFIIE 755
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 38/77 (49%), Gaps = 8/77 (10%)
Query: 259 RLSCFAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGT--LRIQGVQKEDAGFFVCS 316
+SC A G+P P + W ++ ++ G V ++G L I+ V+KED G + C
Sbjct: 685 EVSCTASGNPPPQIMWFKDNETLVEDSG------IVLKDGNRNLTIRRVRKEDEGLYTCQ 738
Query: 317 ALSVAGSTTVRAFLQVR 333
A SV G V AF +
Sbjct: 739 ACSVLGCAKVEAFFIIE 755
Score = 30.4 bits (67), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 31/139 (22%), Positives = 53/139 (38%), Gaps = 12/139 (8%)
Query: 94 RVGGDPLPTI-----LWRRDDGKMPTGRAKILDDRSLQIENVGPQDEGLYIC---DVENL 145
VG P P LW+ + IL ++++N QD+G Y+C D +
Sbjct: 594 HVGELPTPVCKNLDTLWKLNATMFSNSTNDIL---IMELKNASLQDQGDYVCLAQDRKTK 650
Query: 146 VGSISLRASLTVHLLRDDFRAEPKDTRVASGETALLECGPPKGQPEPTLHWKKNGQFIDL 205
+R + + ++ + GE+ + C G P P + W K+ + +
Sbjct: 651 KRHCVVRQLTVLERVAPTITGNLENQTTSIGESIEVSC-TASGNPPPQIMWFKDNETLVE 709
Query: 206 ESSKSLDLSRRTLGWLRVR 224
+S L R L RVR
Sbjct: 710 DSGIVLKDGNRNLTIRRVR 728
Score = 30.4 bits (67), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 30/97 (30%), Positives = 44/97 (45%), Gaps = 19/97 (19%)
Query: 124 SLQIENVGPQDEGLYICDVENLVGSISLRASLTVHLLRDDFRAEPKDTRVASGETALLEC 183
+L I+ V D+GLY C + G ++ + S V + F A SG +L+E
Sbjct: 291 TLTIDGVTRSDQGLYTCAASS--GLMTKKNSTFVRVHEKPFVA------FGSGMESLVEA 342
Query: 184 G-------PPK--GQPEPTLHWKKNGQFIDLESSKSL 211
P K G P P + W KNG I LES+ ++
Sbjct: 343 TVGERVRIPAKYLGYPPPEIKWYKNG--IPLESNHTI 377
>pdb|3ZYO|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
And Immunoglobulin Domain Of Netrin-G Ligand-3
Length = 411
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 41/91 (45%), Gaps = 6/91 (6%)
Query: 72 PFPISEPSDATVLSGSVVEFVCRVGGDPLPTILWRRDDGKMPTG-----RAKILDDRSLQ 126
P + P+D V G E CR G + ++ W +G + T R +L D +L
Sbjct: 313 PVIVEPPTDLNVTEGMAAELKCRTGTS-MTSVNWLTPNGTLMTHGSYRVRISVLHDGTLN 371
Query: 127 IENVGPQDEGLYICDVENLVGSISLRASLTV 157
NV QD G Y C V N G+ + A+L V
Sbjct: 372 FTNVTVQDTGQYTCMVTNSAGNTTASATLNV 402
Score = 37.0 bits (84), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 34/68 (50%), Gaps = 3/68 (4%)
Query: 266 GSPLPSVFW-TQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGST 324
G+ + SV W T G+ LM G+ + V +GTL V +D G + C + AG+T
Sbjct: 337 GTSMTSVNWLTPNGT--LMTHGSYRVRISVLHDGTLNFTNVTVQDTGQYTCMVTNSAGNT 394
Query: 325 TVRAFLQV 332
T A L V
Sbjct: 395 TASATLNV 402
>pdb|3LPW|A Chain A, Crystal Structure Of The Fniii-Tandem A77-A78 From The
A-Band Of Titin
pdb|3LPW|B Chain B, Crystal Structure Of The Fniii-Tandem A77-A78 From The
A-Band Of Titin
Length = 197
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 32/89 (35%), Positives = 43/89 (48%), Gaps = 3/89 (3%)
Query: 410 PGPPAAPVILNTTRGSVTLGWGEPEPRGGGVAPVIGYTVEYFSSDLQTGWVVAAHRITST 469
PGPP + T+ SVTL W P GG + + Y VE S + + A T
Sbjct: 6 PGPPQDLKVKEVTKTSVTLTWDPPLLDGG--SKIKNYIVEKRES-TRKAYSTVATNCHKT 62
Query: 470 SITVSDLKPDTSYMFIVRAENSHGLGIPS 498
S V L+ SY F V AEN +G+G+P+
Sbjct: 63 SWKVDQLQEGCSYYFRVLAENEYGIGLPA 91
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 45/92 (48%), Gaps = 4/92 (4%)
Query: 410 PGPPAAPVILNTTRGSVTLGWGEPEPRGGGVAPVIGYTVEYFSSDLQTGWVVAAHRITST 469
P PP +++ TR SV+L W +PE GG + ++GY VE + W A + T
Sbjct: 103 PLPPGKITLMDVTRNSVSLSWEKPEHDGG--SRILGYIVE-MQTKGSDKWATCA-TVKVT 158
Query: 470 SITVSDLKPDTSYMFIVRAENSHGLGIPSPVS 501
T++ L Y F V A+N G+ P +S
Sbjct: 159 EATITGLIQGEEYSFRVSAQNEKGISDPRQLS 190
>pdb|2YR3|A Chain A, Solution Structure Of The Fourth Ig-Like Domain From
Myosin Light Chain Kinase, Smooth Muscle
Length = 99
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 38/80 (47%), Gaps = 1/80 (1%)
Query: 80 DATVLSGSVVEFVCRVGGDPLPTILWRRDDGKMPTGRAKILDDRS-LQIENVGPQDEGLY 138
D V+ G C V G P+P I W + + R+ + L I++ P+D G Y
Sbjct: 20 DCAVIEGQDFVLQCSVRGTPVPRITWLLNGQPIQYARSTCEAGVAELHIQDALPEDHGTY 79
Query: 139 ICDVENLVGSISLRASLTVH 158
C EN +G +S A +TVH
Sbjct: 80 TCLAENALGQVSCSAWVTVH 99
>pdb|3KVQ|A Chain A, Crystal Structure Of Vegfr2 Extracellular Domain D7
Length = 108
Score = 47.0 bits (110), Expect = 3e-05, Method: Composition-based stats.
Identities = 25/86 (29%), Positives = 40/86 (46%), Gaps = 2/86 (2%)
Query: 70 IKPFPISEPSDATVLSGSVVEFVCRVGGDPLPTILWRRDDGKMPTGRAKILDD--RSLQI 127
+ P + T G +E C G+P P I+W +D+ + +L D R+L I
Sbjct: 9 VAPTITGNLENQTTSIGESIEVSCTASGNPPPQIMWFKDNETLVEDSGIVLKDGNRNLTI 68
Query: 128 ENVGPQDEGLYICDVENLVGSISLRA 153
V +DEGLY C +++G + A
Sbjct: 69 RRVRKEDEGLYTCQACSVLGCAKVEA 94
Score = 43.5 bits (101), Expect = 3e-04, Method: Composition-based stats.
Identities = 25/73 (34%), Positives = 37/73 (50%), Gaps = 8/73 (10%)
Query: 260 LSCFAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGT--LRIQGVQKEDAGFFVCSA 317
+SC A G+P P + W ++ ++ G V ++G L I+ V+KED G + C A
Sbjct: 30 VSCTASGNPPPQIMWFKDNETLVEDSGI------VLKDGNRNLTIRRVRKEDEGLYTCQA 83
Query: 318 LSVAGSTTVRAFL 330
SV G V AF
Sbjct: 84 CSVLGCAKVEAFF 96
>pdb|3DAR|A Chain A, Crystal Structure Of D2 Domain From Human Fgfr2
pdb|3DAR|B Chain B, Crystal Structure Of D2 Domain From Human Fgfr2
Length = 105
Score = 47.0 bits (110), Expect = 3e-05, Method: Composition-based stats.
Identities = 29/80 (36%), Positives = 44/80 (55%), Gaps = 5/80 (6%)
Query: 83 VLSGSVVEFVCRVGGDPLPTILWRRDDGKMPT----GRAKILDDR-SLQIENVGPQDEGL 137
V + + V+F C GG+P+PT+ W ++ + G K+ + SL +E+V P D+G
Sbjct: 25 VPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGN 84
Query: 138 YICDVENLVGSISLRASLTV 157
Y C VEN GSI+ L V
Sbjct: 85 YTCVVENEYGSINHTYHLDV 104
Score = 30.0 bits (66), Expect = 4.4, Method: Composition-based stats.
Identities = 18/66 (27%), Positives = 28/66 (42%), Gaps = 10/66 (15%)
Query: 165 RAEPKDTRVASGETALLECGPPKGQPEPTLHWKKNGQFIDLESSKSLDLSRRTLGWLRVR 224
+ E + V + T C P G P PT+ W KNG+ E +G +VR
Sbjct: 17 KMEKRLHAVPAANTVKFRC-PAGGNPMPTMRWLKNGKEFKQE---------HRIGGYKVR 66
Query: 225 PLYWNV 230
+W++
Sbjct: 67 NQHWSL 72
>pdb|1WVZ|A Chain A, Solution Structure Of The D2 Domain Of The Fibroblast
Growth Factor
Length = 104
Score = 47.0 bits (110), Expect = 3e-05, Method: Composition-based stats.
Identities = 29/80 (36%), Positives = 44/80 (55%), Gaps = 5/80 (6%)
Query: 83 VLSGSVVEFVCRVGGDPLPTILWRRDDGKMPT----GRAKILDDR-SLQIENVGPQDEGL 137
V + + V+F C GG+P+PT+ W ++ + G K+ + SL +E+V P D+G
Sbjct: 24 VPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGN 83
Query: 138 YICDVENLVGSISLRASLTV 157
Y C VEN GSI+ L V
Sbjct: 84 YTCVVENEYGSINHTYHLDV 103
Score = 30.0 bits (66), Expect = 4.5, Method: Composition-based stats.
Identities = 18/66 (27%), Positives = 28/66 (42%), Gaps = 10/66 (15%)
Query: 165 RAEPKDTRVASGETALLECGPPKGQPEPTLHWKKNGQFIDLESSKSLDLSRRTLGWLRVR 224
+ E + V + T C P G P PT+ W KNG+ E +G +VR
Sbjct: 16 KMEKRLHAVPAANTVKFRC-PAGGNPMPTMRWLKNGKEFKQE---------HRIGGYKVR 65
Query: 225 PLYWNV 230
+W++
Sbjct: 66 NQHWSL 71
>pdb|3CAF|A Chain A, Crystal Structure Of Hfgfr2 D2 Domain
pdb|3CU1|A Chain A, Crystal Structure Of 2:2:2 Fgfr2d2:fgf1:sos Complex
pdb|3CU1|C Chain C, Crystal Structure Of 2:2:2 Fgfr2d2:fgf1:sos Complex
pdb|3EUU|A Chain A, Crystal Structure Of The Fgfr2 D2 Domain
pdb|3EUU|B Chain B, Crystal Structure Of The Fgfr2 D2 Domain
Length = 100
Score = 47.0 bits (110), Expect = 4e-05, Method: Composition-based stats.
Identities = 27/73 (36%), Positives = 42/73 (57%), Gaps = 5/73 (6%)
Query: 83 VLSGSVVEFVCRVGGDPLPTILWRRDDGKMPT----GRAKILDDR-SLQIENVGPQDEGL 137
V + + V+F C GG+P+PT+ W ++ + G K+ + SL +E+V P D+G
Sbjct: 20 VPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGN 79
Query: 138 YICDVENLVGSIS 150
Y C VEN GSI+
Sbjct: 80 YTCVVENEYGSIN 92
Score = 29.6 bits (65), Expect = 4.9, Method: Composition-based stats.
Identities = 18/66 (27%), Positives = 28/66 (42%), Gaps = 10/66 (15%)
Query: 165 RAEPKDTRVASGETALLECGPPKGQPEPTLHWKKNGQFIDLESSKSLDLSRRTLGWLRVR 224
+ E + V + T C P G P PT+ W KNG+ E +G +VR
Sbjct: 12 KMEKRLHAVPAANTVKFRC-PAGGNPMPTMRWLKNGKEFKQE---------HRIGGYKVR 61
Query: 225 PLYWNV 230
+W++
Sbjct: 62 NQHWSL 67
>pdb|2NZI|A Chain A, Crystal Structure Of Domains A168-A170 From Titin
pdb|2NZI|B Chain B, Crystal Structure Of Domains A168-A170 From Titin
Length = 305
Score = 47.0 bits (110), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 37/102 (36%), Positives = 46/102 (45%), Gaps = 4/102 (3%)
Query: 405 DSGLFPGPPAAPVILNTTRGSVTLGWGEPEPRGGGVAPVIGYTVEYFSSDLQTGWVVAAH 464
D P PP + + +R SV L W EP GG + + Y VE ++ + V
Sbjct: 194 DVADVPDPPRGVKVSDVSRDSVNLTWTEPASDGG--SKITNYIVEKCATTAERWLRVGQA 251
Query: 465 RITSTSITVSDLKPDTSYMFIVRAENSHGLGIPSPVSPITRT 506
R T TV +L TSY F V AEN GL PS S T T
Sbjct: 252 R--ETRYTVINLFGKTSYQFRVIAENKFGLSKPSEPSEPTIT 291
Score = 35.4 bits (80), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 33/135 (24%), Positives = 56/135 (41%), Gaps = 11/135 (8%)
Query: 91 FVCRVGGDPLPTILWRRDDGKMPTG--RAKILDDR----SLQIENVGPQDEGLYICDVEN 144
VC+V G P P + W R ++ + +I + + L I +V D +Y N
Sbjct: 24 LVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGGYHQLIIASVTDDDATVYQVRATN 83
Query: 145 LVGSISLRASLTVHLLRDDFRAEPKD----TRVASGETALLECGPPKGQPEPTLHWKKNG 200
GS+S ASL V + + + GE ++ P G+P+P + W+K
Sbjct: 84 QGGSVSGTASLEVEVPAKIHLPKTLEGMGAVHALRGEVVSIKI-PFSGKPDPVITWQKGQ 142
Query: 201 QFIDLESSKSLDLSR 215
ID + ++R
Sbjct: 143 DLIDNNGHYQVIVTR 157
Score = 29.3 bits (64), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 38/78 (48%), Gaps = 5/78 (6%)
Query: 266 GSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRI--QGVQKEDAGFFVCSALSVAGS 323
G P P + W Q+G ++ N + + VT+ T + GV+++DAGF+V A + G
Sbjct: 130 GKPDPVITW-QKGQDLI--DNNGHYQVIVTRSFTSLVFPNGVERKDAGFYVVCAKNRFGI 186
Query: 324 TTVRAFLQVREFCVLPKG 341
L V + P+G
Sbjct: 187 DQKTVELDVADVPDPPRG 204
>pdb|1NUN|B Chain B, Crystal Structure Analysis Of The Fgf10-fgfr2b Complex
Length = 230
Score = 46.6 bits (109), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 33/95 (34%), Positives = 44/95 (46%), Gaps = 15/95 (15%)
Query: 78 PSDATVLSGSVVEFVCRVGGDPLPTILWRRDDGKM-----PTG--RAKIL--------DD 122
P++A+ + G VEFVC+V D P I W + K P G K+L +
Sbjct: 124 PANASTVVGGDVEFVCKVYSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKHSGINSSNA 183
Query: 123 RSLQIENVGPQDEGLYICDVENLVGSISLRASLTV 157
L + NV D G YIC V N +G + A LTV
Sbjct: 184 EVLALFNVTEADAGEYICKVSNYIGQANQSAWLTV 218
Score = 46.6 bits (109), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 41/81 (50%), Gaps = 5/81 (6%)
Query: 82 TVLSGSVVEFVCRVGGDPLPTILWRRDDGKMPT----GRAKILDDR-SLQIENVGPQDEG 136
V + + V+F C GG+P PT W ++ + G K+ + SL E+V P D+G
Sbjct: 29 AVPAANTVKFRCPAGGNPXPTXRWLKNGKEFKQEHRIGGYKVRNQHWSLIXESVVPSDKG 88
Query: 137 LYICDVENLVGSISLRASLTV 157
Y C VEN GSI+ L V
Sbjct: 89 NYTCVVENEYGSINHTYHLDV 109
>pdb|1DJS|A Chain A, Ligand-binding Portion Of Fibroblast Growth Factor
Receptor 2 In Complex With Fgf1
Length = 216
Score = 46.2 bits (108), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 41/80 (51%), Gaps = 5/80 (6%)
Query: 83 VLSGSVVEFVCRVGGDPLPTILWRRDDGKMPT----GRAKILDDR-SLQIENVGPQDEGL 137
V + + V+F C GG+P PT W ++ + G K+ + SL E+V P D+G
Sbjct: 23 VPAANTVKFRCPAGGNPXPTXRWLKNGKEFKQEHRIGGYKVRNQHWSLIXESVVPSDKGN 82
Query: 138 YICDVENLVGSISLRASLTV 157
Y C VEN GSI+ L V
Sbjct: 83 YTCVVENEYGSINHTYHLDV 102
Score = 38.5 bits (88), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 32/97 (32%), Positives = 44/97 (45%), Gaps = 17/97 (17%)
Query: 78 PSDATVLSGSVVEFVCRVGGDPLPTILWRRDDGKM-----PTG--RAKILD-------DR 123
P++A+ + G VEFVC+V D P I W + K P G K+L D+
Sbjct: 117 PANASTVVGGDVEFVCKVYSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKAAGVNTTDK 176
Query: 124 SLQ---IENVGPQDEGLYICDVENLVGSISLRASLTV 157
++ I NV +D G Y C N +G A LTV
Sbjct: 177 EIEVLYIRNVTFEDAGEYTCLAGNSIGISFHSAWLTV 213
>pdb|1NCT|A Chain A, Titin Module M5, N-Terminally Extended, Nmr
pdb|1NCU|A Chain A, Titin Module M5, N-Terminally Extended, Nmr
Length = 106
Score = 46.2 bits (108), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 41/88 (46%), Gaps = 4/88 (4%)
Query: 75 ISEPSDATVLSGSVVEFVCRVGGDPLPTILWRRDDGKMPT-GRAKILDDR---SLQIENV 130
+++P TV G F C G+P+PT+ W R + T R ++ + + +I +V
Sbjct: 18 LTKPRSMTVYEGESARFSCDTDGEPVPTVTWLRKGQVLSTSARHQVTTTKYKSTFEISSV 77
Query: 131 GPQDEGLYICDVENLVGSISLRASLTVH 158
DEG Y VEN G +LT+
Sbjct: 78 QASDEGNYSVVVENSEGKQEAEFTLTIQ 105
Score = 32.7 bits (73), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 30/56 (53%), Gaps = 4/56 (7%)
Query: 259 RLSCFAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQ-EGTLRIQGVQKEDAGFF 313
R SC +G P+P+V W ++G QVL +A + T+ + T I VQ D G +
Sbjct: 33 RFSCDTDGEPVPTVTWLRKG-QVL--STSARHQVTTTKYKSTFEISSVQASDEGNY 85
Score = 29.3 bits (64), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
Query: 167 EPKDTRVASGETALLECGPPKGQPEPTLHWKKNGQFI 203
+P+ V GE+A C G+P PT+ W + GQ +
Sbjct: 20 KPRSMTVYEGESARFSCDTD-GEPVPTVTWLRKGQVL 55
>pdb|1TNM|A Chain A, Tertiary Structure Of An Immunoglobulin-Like Domain From
The Muscle Protein Titin: A New Member Of The I Set
pdb|1TNN|A Chain A, Tertiary Structure Of An Immunoglobulin-Like Domain From
The Muscle Protein Titin: A New Member Of The I Set
Length = 100
Score = 45.8 bits (107), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 41/88 (46%), Gaps = 4/88 (4%)
Query: 75 ISEPSDATVLSGSVVEFVCRVGGDPLPTILWRRDDGKMPT-GRAKILDDR---SLQIENV 130
+++P TV G F C G+P+PT+ W R + T R ++ + + +I +V
Sbjct: 12 LTKPRSMTVYEGESARFSCDTDGEPVPTVTWLRKGQVLSTSARHQVTTTKYKSTFEISSV 71
Query: 131 GPQDEGLYICDVENLVGSISLRASLTVH 158
DEG Y VEN G +LT+
Sbjct: 72 QASDEGNYSVVVENSEGKQEAEFTLTIQ 99
Score = 32.3 bits (72), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 30/56 (53%), Gaps = 4/56 (7%)
Query: 259 RLSCFAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQ-EGTLRIQGVQKEDAGFF 313
R SC +G P+P+V W ++G QVL +A + T+ + T I VQ D G +
Sbjct: 27 RFSCDTDGEPVPTVTWLRKG-QVL--STSARHQVTTTKYKSTFEISSVQASDEGNY 79
Score = 29.3 bits (64), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
Query: 167 EPKDTRVASGETALLECGPPKGQPEPTLHWKKNGQFI 203
+P+ V GE+A C G+P PT+ W + GQ +
Sbjct: 14 KPRSMTVYEGESARFSCDTD-GEPVPTVTWLRKGQVL 49
>pdb|2V5M|A Chain A, Structural Basis For Dscam Isoform Specificity
Length = 388
Score = 45.8 bits (107), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 35/127 (27%), Positives = 56/127 (44%), Gaps = 8/127 (6%)
Query: 83 VLSGSVVEFVCRVGGDPLPTILWRRDDGKMPTGRAKILDDR------SLQIENVGPQDEG 136
++ + +C G P P+ W + +A +L+DR +L I++ +D G
Sbjct: 224 LMVAHTISLLCPAQGFPAPSFRWYKFIEGTTRKQAVVLNDRVKQVSGTLIIKDAVVEDSG 283
Query: 137 LYICDVENLVGSISLRASLTVHLLRDDFRAEPKDTRVASGETALLECGPPKGQPEPTLHW 196
Y+C V N VG S+ LTV + +P V G A+ C G P T+ W
Sbjct: 284 KYLCVVNNSVGGESVETVLTVTAPLSA-KIDPPTQTVDFGRPAVFTC-QYTGNPIKTVSW 341
Query: 197 KKNGQFI 203
K+G+ I
Sbjct: 342 MKDGKAI 348
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 69/314 (21%), Positives = 120/314 (38%), Gaps = 67/314 (21%)
Query: 42 SRSIFGSVLG----ARGALSDDQWKLIAKEALIKPFPISEPSDATVLSGSVVEFVCRVGG 97
+R+ FGS++ R ++ + KE +I+ ++ V+ + FV
Sbjct: 84 ARNQFGSIISRDVHVRAVVAQYYEADVNKEHVIR-------GNSAVIKCLIPSFV----A 132
Query: 98 DPLPTILWRRDD------GKMPTGRAKILDDRSLQIENVGPQD-EGLYICDVEN-LVGSI 149
D + + W D+ G G+ +L L I VGP+D Y C ++ L G
Sbjct: 133 DFVEVVSWHTDEEENYFPGAEYDGKYLVLPSGELHIREVGPEDGYKSYQCRTKHRLTGET 192
Query: 150 SLRASLTVHLLRDDFRAEP--------KDTRVASGETALLECGPPKGQPEPTLHWKKNGQ 201
L A+ ++ + + K + T L C P +G P P+ W K
Sbjct: 193 RLSATKGRLVITEPISSSAPRTPALVQKPLELMVAHTISLLC-PAQGFPAPSFRWYK--- 248
Query: 202 FIDLESSKSL----DLSRRTLGWLRVR-PLYWNVARPRANLNPRYIGRKMASLLIWNHP- 255
FI+ + K D ++ G L ++ + + + +N G + ++L P
Sbjct: 249 FIEGTTRKQAVVLNDRVKQVSGTLIIKDAVVEDSGKYLCVVNNSVGGESVETVLTVTAPL 308
Query: 256 --------------RVNRLSCFAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLR 301
R +C G+P+ +V W ++G A GH E LR
Sbjct: 309 SAKIDPPTQTVDFGRPAVFTCQYTGNPIKTVSWMKDG--------KAIGH----SESVLR 356
Query: 302 IQGVQKEDAGFFVC 315
I+ V+KED G + C
Sbjct: 357 IESVKKEDKGMYQC 370
Score = 43.1 bits (100), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 72/311 (23%), Positives = 119/311 (38%), Gaps = 60/311 (19%)
Query: 72 PFPISEPSDATVLSGSV-VEFVCRVGGDPLPTILWRRDD----GKMPTGRAKILDDRSLQ 126
P + EP++ S S E C+ G+P+P I+W R D G +P G +I D L
Sbjct: 4 PVFLKEPTNRIDFSNSTGAEIECKASGNPMPEIIWIRSDGTAVGDVP-GLRQISSDGKLV 62
Query: 127 IENVGPQD------EGLYICDVENLVGSISLRASLTVHLLRDDFRAEPKDTRVASGETAL 180
+D +Y C N GSI R ++ + A+ V G +A+
Sbjct: 63 FPPFRAEDYRQEVHAQVYACLARNQFGSIISRDVHVRAVVAQYYEADVNKEHVIRGNSAV 122
Query: 181 LECGPPKGQPE--PTLHW------------KKNGQFIDLES---------------SKSL 211
++C P + + W + +G+++ L S S
Sbjct: 123 IKCLIPSFVADFVEVVSWHTDEEENYFPGAEYDGKYLVLPSGELHIREVGPEDGYKSYQC 182
Query: 212 DLSRRTLGWLRVRPLYWN--VARPRANLNPR--YIGRKMASLLIWNHPRVNRLSCFAEGS 267
R G R+ + P ++ PR + +K L++ + L C A+G
Sbjct: 183 RTKHRLTGETRLSATKGRLVITEPISSSAPRTPALVQKPLELMVAH---TISLLCPAQGF 239
Query: 268 PLPSVFWTQ--EGS---QVLMFPGNAYGHLHVTQ-EGTLRIQGVQKEDAGFFVCSALSVA 321
P PS W + EG+ Q ++ + V Q GTL I+ ED+G ++C +
Sbjct: 240 PAPSFRWYKFIEGTTRKQAVVL------NDRVKQVSGTLIIKDAVVEDSGKYLCVVNNSV 293
Query: 322 GSTTVRAFLQV 332
G +V L V
Sbjct: 294 GGESVETVLTV 304
Score = 42.7 bits (99), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 40/81 (49%), Gaps = 6/81 (7%)
Query: 77 EPSDATVLSGSVVEFVCRVGGDPLPTILWRRDDGKMPTGRAKILDDRSLQIENVGPQDEG 136
+P TV G F C+ G+P+ T+ W +D G+A + L+IE+V +D+G
Sbjct: 313 DPPTQTVDFGRPAVFTCQYTGNPIKTVSWMKD------GKAIGHSESVLRIESVKKEDKG 366
Query: 137 LYICDVENLVGSISLRASLTV 157
+Y C V N S A L +
Sbjct: 367 MYQCFVRNDRESAEASAELKL 387
>pdb|2V5S|A Chain A, Structural Basis For Dscam Isoform Specificity
pdb|2V5S|B Chain B, Structural Basis For Dscam Isoform Specificity
Length = 394
Score = 45.4 bits (106), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 35/127 (27%), Positives = 56/127 (44%), Gaps = 8/127 (6%)
Query: 83 VLSGSVVEFVCRVGGDPLPTILWRRDDGKMPTGRAKILDDR------SLQIENVGPQDEG 136
++ + +C G P P+ W + +A +L+DR +L I++ +D G
Sbjct: 230 LMVAHTISLLCPAQGFPAPSFRWYKFIEGTTRKQAVVLNDRVKQVSGTLIIKDAVVEDSG 289
Query: 137 LYICDVENLVGSISLRASLTVHLLRDDFRAEPKDTRVASGETALLECGPPKGQPEPTLHW 196
Y+C V N VG S+ LTV + +P V G A+ C G P T+ W
Sbjct: 290 KYLCVVNNSVGGESVETVLTVTAPLSA-KIDPPTQTVDFGRPAVFTC-QYTGNPIKTVSW 347
Query: 197 KKNGQFI 203
K+G+ I
Sbjct: 348 MKDGKAI 354
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 69/314 (21%), Positives = 120/314 (38%), Gaps = 67/314 (21%)
Query: 42 SRSIFGSVLG----ARGALSDDQWKLIAKEALIKPFPISEPSDATVLSGSVVEFVCRVGG 97
+R+ FGS++ R ++ + KE +I+ ++ V+ + FV
Sbjct: 90 ARNQFGSIISRDVHVRAVVAQYYEADVNKEHVIR-------GNSAVIKCLIPSFV----A 138
Query: 98 DPLPTILWRRDD------GKMPTGRAKILDDRSLQIENVGPQD-EGLYICDVEN-LVGSI 149
D + + W D+ G G+ +L L I VGP+D Y C ++ L G
Sbjct: 139 DFVEVVSWHTDEEENYFPGAEYDGKYLVLPSGELHIREVGPEDGYKSYQCRTKHRLTGET 198
Query: 150 SLRASLTVHLLRDDFRAEP--------KDTRVASGETALLECGPPKGQPEPTLHWKKNGQ 201
L A+ ++ + + K + T L C P +G P P+ W K
Sbjct: 199 RLSATKGRLVITEPISSSAPRTPALVQKPLELMVAHTISLLC-PAQGFPAPSFRWYK--- 254
Query: 202 FIDLESSKSL----DLSRRTLGWLRVR-PLYWNVARPRANLNPRYIGRKMASLLIWNHP- 255
FI+ + K D ++ G L ++ + + + +N G + ++L P
Sbjct: 255 FIEGTTRKQAVVLNDRVKQVSGTLIIKDAVVEDSGKYLCVVNNSVGGESVETVLTVTAPL 314
Query: 256 --------------RVNRLSCFAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLR 301
R +C G+P+ +V W ++G A GH E LR
Sbjct: 315 SAKIDPPTQTVDFGRPAVFTCQYTGNPIKTVSWMKDG--------KAIGH----SESVLR 362
Query: 302 IQGVQKEDAGFFVC 315
I+ V+KED G + C
Sbjct: 363 IESVKKEDKGMYQC 376
Score = 42.7 bits (99), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 72/311 (23%), Positives = 119/311 (38%), Gaps = 60/311 (19%)
Query: 72 PFPISEPSDATVLSGSV-VEFVCRVGGDPLPTILWRRDD----GKMPTGRAKILDDRSLQ 126
P + EP++ S S E C+ G+P+P I+W R D G +P G +I D L
Sbjct: 10 PVFLKEPTNRIDFSNSTGAEIECKASGNPMPEIIWIRSDGTAVGDVP-GLRQISSDGKLV 68
Query: 127 IENVGPQD------EGLYICDVENLVGSISLRASLTVHLLRDDFRAEPKDTRVASGETAL 180
+D +Y C N GSI R ++ + A+ V G +A+
Sbjct: 69 FPPFRAEDYRQEVHAQVYACLARNQFGSIISRDVHVRAVVAQYYEADVNKEHVIRGNSAV 128
Query: 181 LECGPPKGQPE--PTLHW------------KKNGQFIDLES---------------SKSL 211
++C P + + W + +G+++ L S S
Sbjct: 129 IKCLIPSFVADFVEVVSWHTDEEENYFPGAEYDGKYLVLPSGELHIREVGPEDGYKSYQC 188
Query: 212 DLSRRTLGWLRVRPLYWN--VARPRANLNPR--YIGRKMASLLIWNHPRVNRLSCFAEGS 267
R G R+ + P ++ PR + +K L++ + L C A+G
Sbjct: 189 RTKHRLTGETRLSATKGRLVITEPISSSAPRTPALVQKPLELMVAH---TISLLCPAQGF 245
Query: 268 PLPSVFWTQ--EGS---QVLMFPGNAYGHLHVTQ-EGTLRIQGVQKEDAGFFVCSALSVA 321
P PS W + EG+ Q ++ + V Q GTL I+ ED+G ++C +
Sbjct: 246 PAPSFRWYKFIEGTTRKQAVVL------NDRVKQVSGTLIIKDAVVEDSGKYLCVVNNSV 299
Query: 322 GSTTVRAFLQV 332
G +V L V
Sbjct: 300 GGESVETVLTV 310
Score = 42.7 bits (99), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 40/81 (49%), Gaps = 6/81 (7%)
Query: 77 EPSDATVLSGSVVEFVCRVGGDPLPTILWRRDDGKMPTGRAKILDDRSLQIENVGPQDEG 136
+P TV G F C+ G+P+ T+ W +D G+A + L+IE+V +D+G
Sbjct: 319 DPPTQTVDFGRPAVFTCQYTGNPIKTVSWMKD------GKAIGHSESVLRIESVKKEDKG 372
Query: 137 LYICDVENLVGSISLRASLTV 157
+Y C V N S A L +
Sbjct: 373 MYQCFVRNDRESAEASAELKL 393
>pdb|2V5R|A Chain A, Structural Basis For Dscam Isoform Specificity
pdb|2V5R|B Chain B, Structural Basis For Dscam Isoform Specificity
Length = 391
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 67/311 (21%), Positives = 112/311 (36%), Gaps = 57/311 (18%)
Query: 72 PFPISEPSDATVLSGSV-VEFVCRVGGDPLPTILWRRDD----GKMPTGRAKILDDRSLQ 126
P + EP++ S S E C+ G+P+P I+W R D G +P G +I D L
Sbjct: 4 PVFLKEPTNRIDFSNSTGAEIECKASGNPMPEIIWIRSDGTAVGDVP-GLRQISSDGKLV 62
Query: 127 IENVGPQD------EGLYICDVENLVGSISLRASLTVHLLRDDFRAEPKDTRVASGETAL 180
+D +Y C N GSI R ++ + +E + V G + +
Sbjct: 63 FPPFRAEDYRQEVHAQVYACLARNQFGSIISRDVHVRAVVIQSYESEADNEYVIRGNSVV 122
Query: 181 LECGPPKGQPE----------------PTLHWKKNGQFIDLES---------------SK 209
++C P + P + +G+++ L S S
Sbjct: 123 MKCEIPSYVADFVFVDLWLDSEGRNYYPNNAAETDGKYLVLPSGELHIREVGPEDGYKSY 182
Query: 210 SLDLSRRTLGWLRVRPLYWN--VARPRANLNPRYIGRKMASLLIWNHPRVNRLSCFAEGS 267
R G R+ + P ++ P+ + + L C A+
Sbjct: 183 QCRTKHRLTGETRLSATKGRLVITEPVGSVRPKVNPQDKHQFIDVELASSYSLLCMAQSY 242
Query: 268 PLPSVFWTQ--EGS---QVLMFPGNAYGHLHVTQ-EGTLRIQGVQKEDAGFFVCSALSVA 321
P PS W + EG+ Q ++ + V Q GTL I+ ED+G ++C +
Sbjct: 243 PTPSFRWYKFIEGTTRKQAVVL------NDRVKQVSGTLIIKDAVVEDSGKYLCVVNNSV 296
Query: 322 GSTTVRAFLQV 332
G +V L V
Sbjct: 297 GGESVETVLTV 307
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 43/158 (27%), Positives = 65/158 (41%), Gaps = 12/158 (7%)
Query: 56 LSDDQWKLIAKEALIKPFPISEPSDA----TVLSGSVVEFVCRVGGDPLPTILWRRDDGK 111
LS + +L+ E + P P D V S +C P P+ W +
Sbjct: 196 LSATKGRLVITEPVGSVRPKVNPQDKHQFIDVELASSYSLLCMAQSYPTPSFRWYKFIEG 255
Query: 112 MPTGRAKILDDR------SLQIENVGPQDEGLYICDVENLVGSISLRASLTVHLLRDDFR 165
+A +L+DR +L I++ +D G Y+C V N VG S+ LTV +
Sbjct: 256 TTRKQAVVLNDRVKQVSGTLIIKDAVVEDSGKYLCVVNNSVGGESVETVLTVTAPL-SAK 314
Query: 166 AEPKDTRVASGETALLECGPPKGQPEPTLHWKKNGQFI 203
+P V G A+ C G P T+ W K+G+ I
Sbjct: 315 IDPPTQTVDFGRPAVFTC-QYTGNPIKTVSWMKDGKAI 351
Score = 42.7 bits (99), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 40/81 (49%), Gaps = 6/81 (7%)
Query: 77 EPSDATVLSGSVVEFVCRVGGDPLPTILWRRDDGKMPTGRAKILDDRSLQIENVGPQDEG 136
+P TV G F C+ G+P+ T+ W +D G+A + L+IE+V +D+G
Sbjct: 316 DPPTQTVDFGRPAVFTCQYTGNPIKTVSWMKD------GKAIGHSESVLRIESVKKEDKG 369
Query: 137 LYICDVENLVGSISLRASLTV 157
+Y C V N S A L +
Sbjct: 370 MYQCFVRNDRESAEASAELKL 390
Score = 38.5 bits (88), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 64/282 (22%), Positives = 105/282 (37%), Gaps = 58/282 (20%)
Query: 76 SEPSDATVLSGSVVEFVCRVG---GDPLPTILWRRDDGK--------MPTGRAKILDDRS 124
SE + V+ G+ V C + D + LW +G+ G+ +L
Sbjct: 108 SEADNEYVIRGNSVVMKCEIPSYVADFVFVDLWLDSEGRNYYPNNAAETDGKYLVLPSGE 167
Query: 125 LQIENVGPQD-EGLYICDVEN-LVGSISLRASLTVHLLRDDF-----RAEPKDTR----V 173
L I VGP+D Y C ++ L G L A+ ++ + + P+D V
Sbjct: 168 LHIREVGPEDGYKSYQCRTKHRLTGETRLSATKGRLVITEPVGSVRPKVNPQDKHQFIDV 227
Query: 174 ASGETALLECGPPKGQPEPTLHWKKNGQFIDLESSKSL----DLSRRTLGWLRVR-PLYW 228
+ L C + P P+ W K FI+ + K D ++ G L ++ +
Sbjct: 228 ELASSYSLLC-MAQSYPTPSFRWYK---FIEGTTRKQAVVLNDRVKQVSGTLIIKDAVVE 283
Query: 229 NVARPRANLNPRYIGRKMASLLIWNHP---------------RVNRLSCFAEGSPLPSVF 273
+ + +N G + ++L P R +C G+P+ +V
Sbjct: 284 DSGKYLCVVNNSVGGESVETVLTVTAPLSAKIDPPTQTVDFGRPAVFTCQYTGNPIKTVS 343
Query: 274 WTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVC 315
W M G A GH E LRI+ V+KED G + C
Sbjct: 344 W--------MKDGKAIGH----SESVLRIESVKKEDKGMYQC 373
>pdb|1X5L|A Chain A, Solution Structure Of The Second Fn3 Domain Of Eph
Receptor A8 Protein
Length = 111
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/86 (36%), Positives = 43/86 (50%), Gaps = 7/86 (8%)
Query: 413 PAAPVILNTTRG---SVTLGWGEPEPRGGGVAPVIGYTVEYFSSDLQTGWVVAAHRITST 469
P+ V++ R SV+L W EPE G ++ Y ++Y+ D + +T T
Sbjct: 11 PSQVVVIRQERAGQTSVSLLWQEPEQPNG---IILEYEIKYYEKDKEMQSYSTLKAVT-T 66
Query: 470 SITVSDLKPDTSYMFIVRAENSHGLG 495
TVS LKP T Y+F VRA S G G
Sbjct: 67 RATVSGLKPGTRYVFQVRARTSAGCG 92
>pdb|2IEP|A Chain A, Crystal Structure Of Immunoglobulin-Like Domains 1 And 2
Of The Receptor Tyrosine Kinase Musk
pdb|2IEP|B Chain B, Crystal Structure Of Immunoglobulin-Like Domains 1 And 2
Of The Receptor Tyrosine Kinase Musk
Length = 192
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 45/175 (25%), Positives = 70/175 (40%), Gaps = 22/175 (12%)
Query: 177 ETALLECGPPKGQPEPTLHWKKNGQFIDL-ESSKSLDLSRRTLGWLRVRPLYWNVARPRA 235
E A C + P+P + W +N I L ++ S+ + + L L V + A
Sbjct: 23 EVATFMCAV-ESYPQPEISWTRNKILIKLFDTRYSIRENGQLLTILSVEDSDDGIYCCTA 81
Query: 236 NLNPRYIGRKMASLLIWNHPRVNR--------------LSCFAEGSPLPSVFWTQEGSQV 281
N +L + P++ R L C G+P PSV W + S +
Sbjct: 82 NNGVGGAVESCGALQVKMKPKITRPPINVKIIEGLKAVLPCTTMGNPKPSVSWIKGDSAL 141
Query: 282 LMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRAF-LQVREF 335
+ V + G+LRI VQKEDAG + C A + G+ + L+V F
Sbjct: 142 -----RENSRIAVLESGSLRIHNVQKEDAGQYRCVAKNSLGTAYSKLVKLEVEVF 191
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 35/119 (29%), Positives = 56/119 (47%), Gaps = 6/119 (5%)
Query: 84 LSGSVVEFVCRVGGDPLPTILWRRDDG--KMPTGRAKILDD-RSLQIENVGPQDEGLYIC 140
L V F+C V P P I W R+ K+ R I ++ + L I +V D+G+Y C
Sbjct: 20 LVEEVATFMCAVESYPQPEISWTRNKILIKLFDTRYSIRENGQLLTILSVEDSDDGIYCC 79
Query: 141 DVENLV-GSISLRASLTVHLLRDDFRAEPKDTRVASGETALLECGPPKGQPEPTLHWKK 198
N V G++ +L V ++ P + ++ G A+L C G P+P++ W K
Sbjct: 80 TANNGVGGAVESCGALQVK-MKPKITRPPINVKIIEGLKAVLPC-TTMGNPKPSVSWIK 136
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 41/85 (48%), Gaps = 1/85 (1%)
Query: 65 AKEALIKPFPISEPSDATVLSGSVVEFVCRVGGDPLPTILWRRDDGKM-PTGRAKILDDR 123
A + +KP P + ++ G C G+P P++ W + D + R +L+
Sbjct: 94 ALQVKMKPKITRPPINVKIIEGLKAVLPCTTMGNPKPSVSWIKGDSALRENSRIAVLESG 153
Query: 124 SLQIENVGPQDEGLYICDVENLVGS 148
SL+I NV +D G Y C +N +G+
Sbjct: 154 SLRIHNVQKEDAGQYRCVAKNSLGT 178
>pdb|1RY7|B Chain B, Crystal Structure Of The 3 Ig Form Of Fgfr3c In Complex
With Fgf1
Length = 334
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 41/80 (51%), Gaps = 5/80 (6%)
Query: 83 VLSGSVVEFVCRVGGDPLPTILWRRDD----GKMPTGRAKILDDR-SLQIENVGPQDEGL 137
V + + V F C G+P P+I W ++ G+ G K+ + SL +E+V P D G
Sbjct: 135 VPAANTVRFRCPAAGNPTPSISWLKNGREFRGEHRIGGIKLRHQQWSLVMESVVPSDRGN 194
Query: 138 YICDVENLVGSISLRASLTV 157
Y C VEN GSI +L V
Sbjct: 195 YTCVVENKFGSIRQTYTLDV 214
Score = 35.4 bits (80), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 30/97 (30%), Positives = 39/97 (40%), Gaps = 17/97 (17%)
Query: 78 PSDATVLSGSVVEFVCRVGGDPLPTILWRRD----------DGK-----MPTGRAKILDD 122
P++ T + GS VEF C+V D P I W + DG + T A D
Sbjct: 229 PANQTAVLGSDVEFHCKVYSDAQPHIQWLKHVEVNGSKVGPDGTPYVTVLKTAGANTTDK 288
Query: 123 --RSLQIENVGPQDEGLYICDVENLVGSISLRASLTV 157
L + NV +D G Y C N +G A L V
Sbjct: 289 ELEVLSLHNVTFEDAGEYTCLAGNSIGFSHHSAWLVV 325
>pdb|3GRW|A Chain A, Fgfr3 In Complex With A Fab
Length = 241
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 41/81 (50%), Gaps = 5/81 (6%)
Query: 82 TVLSGSVVEFVCRVGGDPLPTILWRRDD----GKMPTGRAKILDDR-SLQIENVGPQDEG 136
V + + V F C G+P P+I W ++ G+ G K+ + SL +E+V P D G
Sbjct: 26 AVPAANTVRFRCPAAGNPTPSISWLKNGREFRGEHRIGGIKLRHQQWSLVMESVVPSDRG 85
Query: 137 LYICDVENLVGSISLRASLTV 157
Y C VEN GSI +L V
Sbjct: 86 NYTCVVENKFGSIRQTYTLDV 106
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 43/97 (44%), Gaps = 16/97 (16%)
Query: 78 PSDATVLSGSVVEFVCRVGGDPLPTILWRR----DDGKM-PTG-----------RAKILD 121
P++ T + GS VEF C+V D P I W + + K+ P G +
Sbjct: 121 PANQTAVLGSDVEFHCKVYSDAQPHIQWLKHVEVNGSKVGPDGTPYVTVLKSWISESVEA 180
Query: 122 DRSLQIENVGPQDEGLYICDVENLVGSISLRASLTVH 158
D L++ NV +D G Y+C N +G L+VH
Sbjct: 181 DVRLRLANVSERDGGEYLCRATNFIGVAEKAFWLSVH 217
Score = 29.3 bits (64), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 36/78 (46%), Gaps = 5/78 (6%)
Query: 259 RLSCFAEGSPLPSVFWTQEGSQVLMFPG-NAYGHLHVT-QEGTLRIQGVQKEDAGFFVCS 316
R C A G+P PS+ W + G + F G + G + + Q+ +L ++ V D G + C
Sbjct: 34 RFRCPAAGNPTPSISWLKNGRE---FRGEHRIGGIKLRHQQWSLVMESVVPSDRGNYTCV 90
Query: 317 ALSVAGSTTVRAFLQVRE 334
+ GS L V E
Sbjct: 91 VENKFGSIRQTYTLDVLE 108
>pdb|3OJV|C Chain C, Crystal Structure Of Fgf1 Complexed With The Ectodomain Of
Fgfr1c Exhibiting An Ordered Ligand
Specificity-Determining Betac'-Betae Loop
pdb|3OJV|D Chain D, Crystal Structure Of Fgf1 Complexed With The Ectodomain Of
Fgfr1c Exhibiting An Ordered Ligand
Specificity-Determining Betac'-Betae Loop
Length = 226
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 41/137 (29%), Positives = 60/137 (43%), Gaps = 15/137 (10%)
Query: 83 VLSGSVVEFVCRVGGDPLPTILWRRDDGKM-PTGRAKILDDR----SLQIENVGPQDEGL 137
V + V+F C G P PT+ W ++ + P R R S+ +++V P D+G
Sbjct: 29 VPAAKTVKFKCPSSGTPQPTLRWLKNGKEFKPDHRIGGYKVRYATWSIIMDSVVPSDKGN 88
Query: 138 YICDVENLVGSISLRASLTVHLLRDDFR-----AEPKDTRVASGETALLECGPPKGQPEP 192
Y C VEN GSI+ L V + R R P + VA G C P+P
Sbjct: 89 YTCIVENEYGSINHTYQLDV-VERSPHRPILQAGLPANKTVALGSNVEFMCK-VYSDPQP 146
Query: 193 TLHWKKNGQFIDLESSK 209
+ W K+ I++ SK
Sbjct: 147 HIQWLKH---IEVNGSK 160
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/97 (31%), Positives = 41/97 (42%), Gaps = 17/97 (17%)
Query: 78 PSDATVLSGSVVEFVCRVGGDPLPTILWRRD---DGK------------MPTGRAKILDD 122
P++ TV GS VEF+C+V DP P I W + +G + T D
Sbjct: 123 PANKTVALGSNVEFMCKVYSDPQPHIQWLKHIEVNGSKIGPDNLPYVQILKTAGVNTTDK 182
Query: 123 RS--LQIENVGPQDEGLYICDVENLVGSISLRASLTV 157
L + NV +D G Y C N +G A LTV
Sbjct: 183 EMEVLHLRNVSFEDAGEYTCLAGNSIGLSHHSAWLTV 219
>pdb|1CVS|C Chain C, Crystal Structure Of A Dimeric Fgf2-Fgfr1 Complex
pdb|1CVS|D Chain D, Crystal Structure Of A Dimeric Fgf2-Fgfr1 Complex
pdb|1FQ9|C Chain C, Crystal Structure Of A Ternary Fgf2-Fgfr1-Heparin Complex
pdb|1FQ9|D Chain D, Crystal Structure Of A Ternary Fgf2-Fgfr1-Heparin Complex
Length = 225
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 41/137 (29%), Positives = 60/137 (43%), Gaps = 15/137 (10%)
Query: 83 VLSGSVVEFVCRVGGDPLPTILWRRDDGKM-PTGRAKILDDR----SLQIENVGPQDEGL 137
V + V+F C G P PT+ W ++ + P R R S+ +++V P D+G
Sbjct: 28 VPAAKTVKFKCPSSGTPQPTLRWLKNGKEFKPDHRIGGYKVRYATWSIIMDSVVPSDKGN 87
Query: 138 YICDVENLVGSISLRASLTVHLLRDDFR-----AEPKDTRVASGETALLECGPPKGQPEP 192
Y C VEN GSI+ L V + R R P + VA G C P+P
Sbjct: 88 YTCIVENEYGSINHTYQLDV-VERSPHRPILQAGLPANKTVALGSNVEFMCK-VYSDPQP 145
Query: 193 TLHWKKNGQFIDLESSK 209
+ W K+ I++ SK
Sbjct: 146 HIQWLKH---IEVNGSK 159
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/97 (31%), Positives = 41/97 (42%), Gaps = 17/97 (17%)
Query: 78 PSDATVLSGSVVEFVCRVGGDPLPTILWRRD---DGK------------MPTGRAKILDD 122
P++ TV GS VEF+C+V DP P I W + +G + T D
Sbjct: 122 PANKTVALGSNVEFMCKVYSDPQPHIQWLKHIEVNGSKIGPDNLPYVQILKTAGVNTTDK 181
Query: 123 RS--LQIENVGPQDEGLYICDVENLVGSISLRASLTV 157
L + NV +D G Y C N +G A LTV
Sbjct: 182 EMEVLHLRNVSFEDAGEYTCLAGNSIGLSHHSAWLTV 218
>pdb|3ZYI|A Chain A, Netring2 In Complex With Ngl2
Length = 452
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 43/91 (47%), Gaps = 7/91 (7%)
Query: 72 PFPISEPSDATVLSGSVVEFVCRVGGDPLPTILWRRDDGKMPTG-----RAKILDDRSLQ 126
PF + P D + G + E CR P+ ++ W +G + + R +L+D +L
Sbjct: 353 PFIMDAPRDLNISEGRMAELKCRT--PPMSSVKWLLPNGTVLSHASRHPRISVLNDGTLN 410
Query: 127 IENVGPQDEGLYICDVENLVGSISLRASLTV 157
+V D G+Y C V N+ G+ + A L V
Sbjct: 411 FSHVLLSDTGVYTCMVTNVAGNSNASAYLNV 441
Score = 35.0 bits (79), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 34/77 (44%), Gaps = 3/77 (3%)
Query: 256 RVNRLSCFAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVC 315
R+ L C P+ SV W VL + + + V +GTL V D G + C
Sbjct: 368 RMAELKC--RTPPMSSVKWLLPNGTVLSH-ASRHPRISVLNDGTLNFSHVLLSDTGVYTC 424
Query: 316 SALSVAGSTTVRAFLQV 332
+VAG++ A+L V
Sbjct: 425 MVTNVAGNSNASAYLNV 441
>pdb|3UTO|A Chain A, Twitchin Kinase Region From C.Elegans
(Fn31-Nl-Kin-Crd-Ig26)
pdb|3UTO|B Chain B, Twitchin Kinase Region From C.Elegans
(Fn31-Nl-Kin-Crd-Ig26)
Length = 573
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 40/122 (32%), Positives = 53/122 (43%), Gaps = 18/122 (14%)
Query: 410 PGPPAAPVILNTTRGSVTLGWGEPEPRGGGVAPVIGYTVEYFSSDLQTGWV-VAAHRITS 468
P PP P+I N +V L W P GG + V YT+E + + W A R T
Sbjct: 10 PEPPRFPIIENILDEAVILSWKPPALDGGSL--VTNYTIEKREA-MGGSWSPCAKSRYTY 66
Query: 469 TSITVSDLKPDTSYMFIVRAENSHGLGIP-SPVSPITRTLGLNSLVPQHLLDEARARLGT 527
T T+ L+ Y F + AEN HG P P +P+ L+P DE + R G
Sbjct: 67 T--TIEGLRAGKQYEFRIIAENKHGQSKPCEPTAPV--------LIPG---DERKRRRGY 113
Query: 528 KV 529
V
Sbjct: 114 DV 115
Score = 35.0 bits (79), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 33/82 (40%), Gaps = 4/82 (4%)
Query: 71 KPFPISEPSDATVLSGSVVEFVCRVGGDPLPTILWRRDDGKMPTGRAKIL----DDRSLQ 126
+P I +P V G F CRV P + W +DD ++ + +D L
Sbjct: 482 QPRFIVKPYGTEVGEGQSANFYCRVIASSPPVVTWHKDDRELKQSVKYMKRYNGNDYGLT 541
Query: 127 IENVGPQDEGLYICDVENLVGS 148
I V D+G Y +N G+
Sbjct: 542 INRVKGDDKGEYTVRAKNSYGT 563
>pdb|1EVT|C Chain C, Crystal Structure Of Fgf1 In Complex With The
Extracellular Ligand Binding Domain Of Fgf Receptor 1
(Fgfr1)
pdb|1EVT|D Chain D, Crystal Structure Of Fgf1 In Complex With The
Extracellular Ligand Binding Domain Of Fgf Receptor 1
(Fgfr1)
Length = 225
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 41/137 (29%), Positives = 60/137 (43%), Gaps = 15/137 (10%)
Query: 83 VLSGSVVEFVCRVGGDPLPTILWRRDDGKM-PTGRAKILDDR----SLQIENVGPQDEGL 137
V + V+F C G P PT+ W ++ + P R R S+ +++V P D+G
Sbjct: 28 VPAAKTVKFKCPSSGTPNPTLRWLKNGKEFKPDHRIGGYKVRYATWSIIMDSVVPSDKGN 87
Query: 138 YICDVENLVGSISLRASLTVHLLRDDFR-----AEPKDTRVASGETALLECGPPKGQPEP 192
Y C VEN GSI+ L V + R R P + VA G C P+P
Sbjct: 88 YTCIVENEYGSINHTYQLDV-VERSPHRPILQAGLPANKTVALGSNVEFMCK-VYSDPQP 145
Query: 193 TLHWKKNGQFIDLESSK 209
+ W K+ I++ SK
Sbjct: 146 HIQWLKH---IEVNGSK 159
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/97 (31%), Positives = 41/97 (42%), Gaps = 17/97 (17%)
Query: 78 PSDATVLSGSVVEFVCRVGGDPLPTILWRRD---DGK------------MPTGRAKILDD 122
P++ TV GS VEF+C+V DP P I W + +G + T D
Sbjct: 122 PANKTVALGSNVEFMCKVYSDPQPHIQWLKHIEVNGSKIGPDNLPYVQILKTAGVNTTDK 181
Query: 123 RS--LQIENVGPQDEGLYICDVENLVGSISLRASLTV 157
L + NV +D G Y C N +G A LTV
Sbjct: 182 EMEVLHLRNVSFEDAGEYTCLAGNSIGLSHHSAWLTV 218
>pdb|2DL9|A Chain A, Solution Structure Of The Ig-Like Domain Of Human Leucine-
Rich Repeat-Containing Protein 4
Length = 103
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 43/91 (47%), Gaps = 7/91 (7%)
Query: 72 PFPISEPSDATVLSGSVVEFVCRVGGDPLPTILWRRDDGKMPTG-----RAKILDDRSLQ 126
PF + P D + G + E CR P+ ++ W +G + + R +L+D +L
Sbjct: 8 PFIMDAPRDLNISEGRMAELKCRT--PPMSSVKWLLPNGTVLSHASRHPRISVLNDGTLN 65
Query: 127 IENVGPQDEGLYICDVENLVGSISLRASLTV 157
+V D G+Y C V N+ G+ + A L V
Sbjct: 66 FSHVLLSDTGVYTCMVTNVAGNSNASAYLNV 96
Score = 36.2 bits (82), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 34/77 (44%), Gaps = 3/77 (3%)
Query: 256 RVNRLSCFAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVC 315
R+ L C P+ SV W VL + + + V +GTL V D G + C
Sbjct: 23 RMAELKCRTP--PMSSVKWLLPNGTVLSH-ASRHPRISVLNDGTLNFSHVLLSDTGVYTC 79
Query: 316 SALSVAGSTTVRAFLQV 332
+VAG++ A+L V
Sbjct: 80 MVTNVAGNSNASAYLNV 96
>pdb|2DM3|A Chain A, Solution Structure Of The Second Ig Domain Of Human
Palladin
Length = 110
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 30/93 (32%), Positives = 40/93 (43%), Gaps = 5/93 (5%)
Query: 70 IKPFPISEPSDATVLSGSVVEFVCRVGGDPLPTILWRRDDGKM-PTGRAKIL----DDRS 124
+P + P D TV G + C+V G P P + W+ D + P K+L S
Sbjct: 8 FRPHFLQAPGDLTVQEGKLCRMDCKVSGLPTPDLSWQLDGKPVRPDSAHKMLVRENGVHS 67
Query: 125 LQIENVGPQDEGLYICDVENLVGSISLRASLTV 157
L IE V +D G+Y C N G S L V
Sbjct: 68 LIIEPVTSRDAGIYTCIATNRAGQNSFSLELVV 100
Score = 33.9 bits (76), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 38/79 (48%), Gaps = 5/79 (6%)
Query: 256 RVNRLSCFAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEG--TLRIQGVQKEDAGFF 313
++ R+ C G P P + W +G V P +A+ L V + G +L I+ V DAG +
Sbjct: 25 KLCRMDCKVSGLPTPDLSWQLDGKPVR--PDSAHKML-VRENGVHSLIIEPVTSRDAGIY 81
Query: 314 VCSALSVAGSTTVRAFLQV 332
C A + AG + L V
Sbjct: 82 TCIATNRAGQNSFSLELVV 100
>pdb|1E07|A Chain A, Model Of Human Carcinoembryonic Antigen By Homology
Modelling And Curve-Fitting To Experimental Solution
Scattering Data
Length = 642
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 31/112 (27%), Positives = 52/112 (46%), Gaps = 10/112 (8%)
Query: 49 VLGARGALSDDQWKLIAKEALIKP-FPISEPSDATVLSGSVVEFVCRVGGDPLPTILWRR 107
V G + ++S ++ + + L P PI P D++ LSG+ + C +P P WR
Sbjct: 536 VCGIQNSVSANRSDPVTLDVLYGPDTPIISPPDSSYLSGANLNLSCHSASNPSPQYSWRI 595
Query: 108 DDGKMPTGRAKILDDRSLQIENVGPQDEGLYICDVENLVG--SISLRASLTV 157
+ +P ++ L I + P + G Y C V NL + S+ S+TV
Sbjct: 596 N--GIPQQHTQV-----LFIAKITPNNNGTYACFVSNLATGRNNSIVKSITV 640
Score = 36.2 bits (82), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 38/142 (26%), Positives = 55/142 (38%), Gaps = 5/142 (3%)
Query: 62 KLIAKEALIKPFPISEPSDATVLSGSVVEFVCRVGGDPLPTILWRRDDGKMPTG-RAKIL 120
K I A + IS + V V F C T LW + +P R ++
Sbjct: 458 KTITVSAELPKPSISSNNSKPVEDKDAVAFTCEPEAQNT-TYLWWVNGQSLPVSPRLQLS 516
Query: 121 D-DRSLQIENVGPQDEGLYICDVENLVGSI-SLRASLTVHLLRDDFRAEPKDTRVASGET 178
+ +R+L + NV D Y+C ++N V + S +L V D P D+ SG
Sbjct: 517 NGNRTLTLFNVTRNDARAYVCGIQNSVSANRSDPVTLDVLYGPDTPIISPPDSSYLSGAN 576
Query: 179 ALLECGPPKGQPEPTLHWKKNG 200
L C P P W+ NG
Sbjct: 577 LNLSCH-SASNPSPQYSWRING 597
>pdb|1EPF|A Chain A, Crystal Structure Of The Two N-Terminal Immunoglobulin
Domains Of The Neural Cell Adhesion Molecule (Ncam)
pdb|1EPF|B Chain B, Crystal Structure Of The Two N-Terminal Immunoglobulin
Domains Of The Neural Cell Adhesion Molecule (Ncam)
pdb|1EPF|C Chain C, Crystal Structure Of The Two N-Terminal Immunoglobulin
Domains Of The Neural Cell Adhesion Molecule (Ncam)
pdb|1EPF|D Chain D, Crystal Structure Of The Two N-Terminal Immunoglobulin
Domains Of The Neural Cell Adhesion Molecule (Ncam)
Length = 191
Score = 43.1 bits (100), Expect = 5e-04, Method: Composition-based stats.
Identities = 39/138 (28%), Positives = 60/138 (43%), Gaps = 11/138 (7%)
Query: 78 PSDATVLSGSVVEFVCRVGGDPL-PTILWRRDDG-KMPTGRAKIL------DDRSLQIEN 129
PS + G F+C+V GD I W +G K+ + +I D +L I N
Sbjct: 9 PSQGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDDDSSTLTIYN 68
Query: 130 VGPQDEGLYICDVENLVGSISLRASLTVHLLRD-DFRAEPKDTRVASGETALLECGPPKG 188
D G+Y C V G+ S A++ V + + F+ P GE A++ C
Sbjct: 69 ANIDDAGIYKCVVTAEDGTQS-EATVNVKIFQKLMFKNAPTPQEFKEGEDAVIVCDVVSS 127
Query: 189 QPEPTLHWKKNGQFIDLE 206
P PT+ WK G+ + L+
Sbjct: 128 LP-PTIIWKHKGRDVILK 144
Score = 32.3 bits (72), Expect = 0.83, Method: Composition-based stats.
Identities = 21/67 (31%), Positives = 28/67 (41%), Gaps = 3/67 (4%)
Query: 78 PSDATVLSGSVVEFVCRVGGDPLPTILWR---RDDGKMPTGRAKILDDRSLQIENVGPQD 134
P+ G VC V PTI+W+ RD R +L + LQI + D
Sbjct: 107 PTPQEFKEGEDAVIVCDVVSSLPPTIIWKHKGRDVILKKDVRFIVLSNNYLQIRGIKKTD 166
Query: 135 EGLYICD 141
EG Y C+
Sbjct: 167 EGTYRCE 173
>pdb|2RJM|A Chain A, 3ig Structure Of Titin Domains I67-I69 E-To-A Mutated
Variant
Length = 284
Score = 43.1 bits (100), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 43/91 (47%), Gaps = 10/91 (10%)
Query: 71 KPFPISEPSDATVLSGSVVEFVCRVGGDPLPTILWRRDDGKMPTGRA-KILDDR---SLQ 126
KP P+ L G+ V C + G P + W +D ++ +G+ KI+ + S+
Sbjct: 198 KPHPVE------TLKGADVHLECELQGTPPFQVSWHKDKRELRSGKKYKIMSENFLTSIH 251
Query: 127 IENVGPQDEGLYICDVENLVGSISLRASLTV 157
I NV D G Y C N VGS + S+T+
Sbjct: 252 ILNVDSADIGEYQCKASNDVGSYTCVGSITL 282
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 35/127 (27%), Positives = 58/127 (45%), Gaps = 8/127 (6%)
Query: 91 FVCRVGGDPLPTILWRRDDGKMPTG---RAKILDDRS-LQIENVGPQDEGLYICDVENLV 146
+ C++GG P +LW +D+ ++ R ++ + L++ N+ +D G Y C+ N
Sbjct: 119 YECKIGGSPEIKVLWYKDETEIQESSKFRMSFVESVAVLEMYNLSVEDSGDYTCEAHNAA 178
Query: 147 GSISLRASLTVHLLRDDFRAEPKDTRVASGETALLECGPPKGQPEPTLHWKKNGQFIDLE 206
GS S SL V FR +P G LEC +G P + W K+ + +L
Sbjct: 179 GSASSSTSLKVK-EPPVFRKKPHPVETLKGADVHLEC-ELQGTPPFQVSWHKDKR--ELR 234
Query: 207 SSKSLDL 213
S K +
Sbjct: 235 SGKKYKI 241
Score = 37.7 bits (86), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 41/146 (28%), Positives = 56/146 (38%), Gaps = 6/146 (4%)
Query: 68 ALIKPFPISEPSDATVLSGSVVEFVCRVGGDPLPTILWRRDDGKM-PTGRAK---ILDDR 123
A+ PF +P + G F C V G I W +D+ ++ P G K + +
Sbjct: 2 AMAPPFFDLKPVSVDLALGESGTFKCHVTGTAPIKITWAKDNREIRPGGNYKMTLVENTA 61
Query: 124 SLQIENVGPQDEGLYICDVENLVGSISLRASLTVHLLRDDFRAEPKDTRVASGETALLEC 183
+L + V D G Y C N+ G S A L V + V E EC
Sbjct: 62 TLTVLKVTKGDAGQYTCYASNVAGKDSCSAQLGVQAPPRFIKKLEPSRIVKQDEHTRYEC 121
Query: 184 GPPKGQPEPTLHWKKNGQFIDLESSK 209
G PE + W K+ I ESSK
Sbjct: 122 -KIGGSPEIKVLWYKDETEIQ-ESSK 145
Score = 37.4 bits (85), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 33/74 (44%), Gaps = 2/74 (2%)
Query: 260 LSCFAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALS 319
C G+ + W ++ ++ PG Y V TL + V K DAG + C A +
Sbjct: 25 FKCHVTGTAPIKITWAKDNREIR--PGGNYKMTLVENTATLTVLKVTKGDAGQYTCYASN 82
Query: 320 VAGSTTVRAFLQVR 333
VAG + A L V+
Sbjct: 83 VAGKDSCSAQLGVQ 96
Score = 32.3 bits (72), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 43/96 (44%), Gaps = 3/96 (3%)
Query: 239 PRYIGRKMASLLIWNHPRVNRLSCFAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEG 298
PR+I +K+ I R C GSP V W ++ +++ + + V
Sbjct: 99 PRFI-KKLEPSRIVKQDEHTRYECKIGGSPEIKVLWYKDETEIQ--ESSKFRMSFVESVA 155
Query: 299 TLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVRE 334
L + + ED+G + C A + AGS + L+V+E
Sbjct: 156 VLEMYNLSVEDSGDYTCEAHNAAGSASSSTSLKVKE 191
>pdb|2RIK|A Chain A, I-Band Fragment I67-I69 From Titin
Length = 284
Score = 42.7 bits (99), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 43/91 (47%), Gaps = 10/91 (10%)
Query: 71 KPFPISEPSDATVLSGSVVEFVCRVGGDPLPTILWRRDDGKMPTGRA-KILDDR---SLQ 126
KP P+ L G+ V C + G P + W +D ++ +G+ KI+ + S+
Sbjct: 198 KPHPVE------TLKGADVHLECELQGTPPFQVSWHKDKRELRSGKKYKIMSENFLTSIH 251
Query: 127 IENVGPQDEGLYICDVENLVGSISLRASLTV 157
I NV D G Y C N VGS + S+T+
Sbjct: 252 ILNVDSADIGEYQCKASNDVGSYTCVGSITL 282
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 35/127 (27%), Positives = 58/127 (45%), Gaps = 8/127 (6%)
Query: 91 FVCRVGGDPLPTILWRRDDGKMPTG---RAKILDDRS-LQIENVGPQDEGLYICDVENLV 146
+ C++GG P +LW +D+ ++ R ++ + L++ N+ +D G Y C+ N
Sbjct: 119 YECKIGGSPEIKVLWYKDETEIQESSKFRMSFVESVAVLEMYNLSVEDSGDYTCEAHNAA 178
Query: 147 GSISLRASLTVHLLRDDFRAEPKDTRVASGETALLECGPPKGQPEPTLHWKKNGQFIDLE 206
GS S SL V FR +P G LEC +G P + W K+ + +L
Sbjct: 179 GSASSSTSLKVK-EPPVFRKKPHPVETLKGADVHLEC-ELQGTPPFQVSWHKDKR--ELR 234
Query: 207 SSKSLDL 213
S K +
Sbjct: 235 SGKKYKI 241
Score = 39.3 bits (90), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 34/75 (45%), Gaps = 2/75 (2%)
Query: 260 LSCFAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALS 319
C G+ + W ++ ++ PG Y V TL + V K DAG + C A +
Sbjct: 25 FKCHVTGTAPIKITWAKDNREIR--PGGNYKMTLVENTATLTVLKVTKGDAGQYTCYASN 82
Query: 320 VAGSTTVRAFLQVRE 334
VAG + A L V+E
Sbjct: 83 VAGKDSCSAQLGVQE 97
Score = 37.4 bits (85), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 41/146 (28%), Positives = 56/146 (38%), Gaps = 6/146 (4%)
Query: 68 ALIKPFPISEPSDATVLSGSVVEFVCRVGGDPLPTILWRRDDGKM-PTGRAK---ILDDR 123
A+ PF +P + G F C V G I W +D+ ++ P G K + +
Sbjct: 2 AMAPPFFDLKPVSVDLALGESGTFKCHVTGTAPIKITWAKDNREIRPGGNYKMTLVENTA 61
Query: 124 SLQIENVGPQDEGLYICDVENLVGSISLRASLTVHLLRDDFRAEPKDTRVASGETALLEC 183
+L + V D G Y C N+ G S A L V + V E EC
Sbjct: 62 TLTVLKVTKGDAGQYTCYASNVAGKDSCSAQLGVQEPPRFIKKLEPSRIVKQDEHTRYEC 121
Query: 184 GPPKGQPEPTLHWKKNGQFIDLESSK 209
G PE + W K+ I ESSK
Sbjct: 122 -KIGGSPEIKVLWYKDETEIQ-ESSK 145
Score = 32.3 bits (72), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 43/96 (44%), Gaps = 3/96 (3%)
Query: 239 PRYIGRKMASLLIWNHPRVNRLSCFAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEG 298
PR+I +K+ I R C GSP V W ++ +++ + + V
Sbjct: 99 PRFI-KKLEPSRIVKQDEHTRYECKIGGSPEIKVLWYKDETEIQ--ESSKFRMSFVESVA 155
Query: 299 TLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVRE 334
L + + ED+G + C A + AGS + L+V+E
Sbjct: 156 VLEMYNLSVEDSGDYTCEAHNAAGSASSSTSLKVKE 191
>pdb|2WIM|A Chain A, Crystal Structure Of Ncam2 Ig1-3
pdb|2WIM|B Chain B, Crystal Structure Of Ncam2 Ig1-3
Length = 291
Score = 42.4 bits (98), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 39/131 (29%), Positives = 58/131 (44%), Gaps = 19/131 (14%)
Query: 86 GSVVEFVCRVGGDPLPTILWRRDDGKMPT---GRAKILDDRSLQIENVGPQDEGLYICD- 141
G E VCRV P P + W + ++ T R +L + +LQI N+ DEG+Y C+
Sbjct: 113 GEDAEVVCRVSSSPAPAVSWLYHNEEVTTISDNRFAMLANNNLQILNINKSDEGIYRCEG 172
Query: 142 -VENLVGSISLRASLT-------VHLLRDDFRAEPKDTRVASGETALLECGPPKGQPEPT 193
VE G I R + + + + F A + GE C G PEP
Sbjct: 173 RVEAR-GEIDFRDIIVIVNVPPAISMPQKSFNATAE-----RGEEMTFSC-RASGSPEPA 225
Query: 194 LHWKKNGQFID 204
+ W +NG+ I+
Sbjct: 226 ISWFRNGKLIE 236
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 35/82 (42%), Gaps = 2/82 (2%)
Query: 80 DATVLSGSVVEFVCRVGGDPLPTILWRRDDGKMPTGRAKIL--DDRSLQIENVGPQDEGL 137
+AT G + F CR G P P I W R+ + IL + L + N+ D G
Sbjct: 203 NATAERGEEMTFSCRASGSPEPAISWFRNGKLIEENEKYILKGSNTELTVRNIINSDGGP 262
Query: 138 YICDVENLVGSISLRASLTVHL 159
Y+C N G +A L V +
Sbjct: 263 YVCRATNKAGEDEKQAFLQVFV 284
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 60/266 (22%), Positives = 97/266 (36%), Gaps = 31/266 (11%)
Query: 91 FVCRVGGDPLPTILWRRDDGKMPTGRAKILDDRS-----LQIENVGPQDEGLYICDVENL 145
F C G+P +I W G+ +++ + L I N +D G+Y C +
Sbjct: 24 FTCTAIGEP-ESIDWYNPQGEKIISTQRVVVQKEGVRSRLTIYNANIEDAGIYRCQATDA 82
Query: 146 VGSISLRASLTVHLLRD-DFRAEPKDTRVASGETALLECGPPKGQPEPTLHW-KKNGQFI 203
G + A++ + + + FR GE A + C P P + W N +
Sbjct: 83 KGQ-TQEATVVLEIYQKLTFREVVSPQEFKQGEDAEVVC-RVSSSPAPAVSWLYHNEEVT 140
Query: 204 DLESSKSLDLSRRTLGWLRVRPLYWNVARPRANLNPRYIGRKMASLLIWNHP-------- 255
+ ++ L+ L L + + R + R ++I N P
Sbjct: 141 TISDNRFAMLANNNLQILNINKSDEGIYRCEGRVEARGEIDFRDIIVIVNVPPAISMPQK 200
Query: 256 ---------RVNRLSCFAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQ 306
SC A GSP P++ W + G L+ Y E T+R +
Sbjct: 201 SFNATAERGEEMTFSCRASGSPEPAISWFRNGK--LIEENEKYILKGSNTELTVR--NII 256
Query: 307 KEDAGFFVCSALSVAGSTTVRAFLQV 332
D G +VC A + AG +AFLQV
Sbjct: 257 NSDGGPYVCRATNKAGEDEKQAFLQV 282
>pdb|2XYC|A Chain A, Crystal Structure Of Ncam2 Igiv-Fn3i
Length = 291
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 37/140 (26%), Positives = 57/140 (40%), Gaps = 14/140 (10%)
Query: 71 KPFPISEPSDATVLSGSVVEFVCRVGGDPLPTILWRRD-DGKMPTGRAKILDDR------ 123
+P I ++ T +G V VC G+P+P I W+R DG T K LD R
Sbjct: 1 QPHIIQLKNETTYENGQVT-LVCDAEGEPIPEITWKRAVDGFTFTEGDKSLDGRIEVKGQ 59
Query: 124 ----SLQIENVGPQDEGLYICDVENLVGSISLRASLTVHLLRDDFRAEPKDTRVASGETA 179
SL I++V D G Y C+ + +G L + F + G
Sbjct: 60 HGSSSLHIKDVKLSDSGRYDCEAASRIGGHQKSMYLDIEYA-PKFISNQTIYYSWEGNPI 118
Query: 180 LLECGPPKGQPEPTLHWKKN 199
+ C K P ++HW+++
Sbjct: 119 NISCD-VKSNPPASIHWRRD 137
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 61/279 (21%), Positives = 104/279 (37%), Gaps = 40/279 (14%)
Query: 260 LSCFAEGSPLPSVFWTQEGSQVLMFPGNAY--GHLHVT-QEGT--LRIQGVQKEDAGFFV 314
L C AEG P+P + W + G+ G + V Q G+ L I+ V+ D+G +
Sbjct: 20 LVCDAEGEPIPEITWKRAVDGFTFTEGDKSLDGRIEVKGQHGSSSLHIKDVKLSDSGRYD 79
Query: 315 CSALSVAGSTTVRAFLQVREFCVLPKGTFTLGQPNLATGNSDLRRIACDLRET------- 367
C A S G +L + PK F Q + + I+CD++
Sbjct: 80 CEAASRIGGHQKSMYLDIE---YAPK--FISNQTIYYSWEGNPINISCDVKSNPPASIHW 134
Query: 368 --DSGLYTCXXXXXXXXXXXXXXXXVEPRPGP-------------HAVHRMPDSGL---- 408
D + +E P H R + L
Sbjct: 135 RRDKLVLPAKNTTNLKTYSTGRKMILEIAPTSDNDFGRYNCTATNHIGTRFQEYILALAD 194
Query: 409 FPGPPAAPVILNTTRGSVTLGWGEPEPRGGGVAPVIGYTVEYFSSDLQTGWVVAAHRITS 468
P P I+ ++ + + + +P+ GG P+ Y V+ + +V +H +
Sbjct: 195 VPSSPYGVKIIELSQTTAKVSFNKPDSHGG--VPIHHYQVDVKEVASEIWKIVRSHGV-Q 251
Query: 469 TSITVSDLKPDTSYMFIVRAENSHGLGIPSPVSPITRTL 507
T + +++L+P+T+Y V A N G G S + I +TL
Sbjct: 252 TMVVLNNLEPNTTYEIRVAAVNGKGQGDYSKIE-IFQTL 289
>pdb|2V5T|A Chain A, Crystal Structure Of Ncam2 Ig2-3
Length = 189
Score = 41.6 bits (96), Expect = 0.001, Method: Composition-based stats.
Identities = 29/91 (31%), Positives = 38/91 (41%), Gaps = 5/91 (5%)
Query: 72 PFPISEPS---DATVLSGSVVEFVCRVGGDPLPTILWRRDDGKMPTGRAKIL--DDRSLQ 126
P IS P +AT G + F CR G P P I W R+ + IL + L
Sbjct: 96 PPAISMPQKSFNATAERGEEMTFSCRASGSPEPAISWFRNGKLIEENEKYILKGSNTELT 155
Query: 127 IENVGPQDEGLYICDVENLVGSISLRASLTV 157
+ N+ D G Y+C N G +A L V
Sbjct: 156 VRNIINSDGGPYVCRATNKAGEDEKQAFLQV 186
Score = 41.6 bits (96), Expect = 0.001, Method: Composition-based stats.
Identities = 38/126 (30%), Positives = 56/126 (44%), Gaps = 9/126 (7%)
Query: 86 GSVVEFVCRVGGDPLPTILWRRDDGKMPT---GRAKILDDRSLQIENVGPQDEGLYICD- 141
G E VCRV P P + W + ++ T R +L + +LQI N+ DEG+Y C+
Sbjct: 17 GEDAEVVCRVSSSPAPAVSWLYHNEEVTTISDNRFAMLANNNLQILNINKSDEGIYRCEG 76
Query: 142 -VENLVGSISLRASLTVHLLRDDFRAEPK--DTRVASGETALLECGPPKGQPEPTLHWKK 198
VE G I R + + + K + GE C G PEP + W +
Sbjct: 77 RVEAR-GEIDFRDIIVIVNVPPAISMPQKSFNATAERGEEMTFSC-RASGSPEPAISWFR 134
Query: 199 NGQFID 204
NG+ I+
Sbjct: 135 NGKLIE 140
Score = 38.5 bits (88), Expect = 0.012, Method: Composition-based stats.
Identities = 26/73 (35%), Positives = 35/73 (47%), Gaps = 4/73 (5%)
Query: 260 LSCFAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALS 319
SC A GSP P++ W + G L+ Y E T+R + D G +VC A +
Sbjct: 118 FSCRASGSPEPAISWFRNGK--LIEENEKYILKGSNTELTVR--NIINSDGGPYVCRATN 173
Query: 320 VAGSTTVRAFLQV 332
AG +AFLQV
Sbjct: 174 KAGEDEKQAFLQV 186
>pdb|2JLL|A Chain A, Crystal Structure Of Ncam2 Igiv-Fn3ii
Length = 389
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 37/140 (26%), Positives = 57/140 (40%), Gaps = 14/140 (10%)
Query: 71 KPFPISEPSDATVLSGSVVEFVCRVGGDPLPTILWRRD-DGKMPTGRAKILDDR------ 123
+P I ++ T +G V VC G+P+P I W+R DG T K LD R
Sbjct: 1 QPHIIQLKNETTYENGQVT-LVCDAEGEPIPEITWKRAVDGFTFTEGDKSLDGRIEVKGQ 59
Query: 124 ----SLQIENVGPQDEGLYICDVENLVGSISLRASLTVHLLRDDFRAEPKDTRVASGETA 179
SL I++V D G Y C+ + +G L + F + G
Sbjct: 60 HGSSSLHIKDVKLSDSGRYDCEAASRIGGHQKSMYLDIEYA-PKFISNQTIYYSWEGNPI 118
Query: 180 LLECGPPKGQPEPTLHWKKN 199
+ C K P ++HW+++
Sbjct: 119 NISCD-VKSNPPASIHWRRD 137
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 61/279 (21%), Positives = 104/279 (37%), Gaps = 40/279 (14%)
Query: 260 LSCFAEGSPLPSVFWTQEGSQVLMFPGNAY--GHLHVT-QEGT--LRIQGVQKEDAGFFV 314
L C AEG P+P + W + G+ G + V Q G+ L I+ V+ D+G +
Sbjct: 20 LVCDAEGEPIPEITWKRAVDGFTFTEGDKSLDGRIEVKGQHGSSSLHIKDVKLSDSGRYD 79
Query: 315 CSALSVAGSTTVRAFLQVREFCVLPKGTFTLGQPNLATGNSDLRRIACDLRET------- 367
C A S G +L + PK F Q + + I+CD++
Sbjct: 80 CEAASRIGGHQKSMYLDIE---YAPK--FISNQTIYYSWEGNPINISCDVKSNPPASIHW 134
Query: 368 --DSGLYTCXXXXXXXXXXXXXXXXVEPRPGP-------------HAVHRMPDSGL---- 408
D + +E P H R + L
Sbjct: 135 RRDKLVLPAKNTTNLKTYSTGRKMILEIAPTSDNDFGRYNCTATNHIGTRFQEYILALAD 194
Query: 409 FPGPPAAPVILNTTRGSVTLGWGEPEPRGGGVAPVIGYTVEYFSSDLQTGWVVAAHRITS 468
P P I+ ++ + + + +P+ GG P+ Y V+ + +V +H +
Sbjct: 195 VPSSPYGVKIIELSQTTAKVSFNKPDSHGG--VPIHHYQVDVKEVASEIWKIVRSHGV-Q 251
Query: 469 TSITVSDLKPDTSYMFIVRAENSHGLGIPSPVSPITRTL 507
T + +++L+P+T+Y V A N G G S + I +TL
Sbjct: 252 TMVVLNNLEPNTTYEIRVAAVNGKGQGDYSKIE-IFQTL 289
>pdb|3LCY|A Chain A, Titin Ig Tandem Domains A164-A165
pdb|3LCY|B Chain B, Titin Ig Tandem Domains A164-A165
pdb|3LCY|C Chain C, Titin Ig Tandem Domains A164-A165
pdb|3LCY|D Chain D, Titin Ig Tandem Domains A164-A165
Length = 197
Score = 40.8 bits (94), Expect = 0.002, Method: Composition-based stats.
Identities = 34/126 (26%), Positives = 50/126 (39%), Gaps = 7/126 (5%)
Query: 77 EPSDATVLSGSVVEFVCRVGGDPLPTILWRRDDGKMPTGRA-KILDD---RSLQIENVGP 132
E D T G + C++ G PLP I W R ++ R K+ D +L +
Sbjct: 13 EMKDVTTKLGEAAQLSCQIVGRPLPDIKWYRFGKELIQSRKYKMSSDGRTHTLTVMTEEQ 72
Query: 133 QDEGLYICDVENLVGSISLRASLTVHLLRDDFRAEPKDTRV--ASGETALLECGPPKGQP 190
+DEG+Y C N VG + + L + P + A G T L G+P
Sbjct: 73 EDEGVYTCIATNEVGEVETSSKLLLQATPQFHPGYPLKEKYYGAVGSTLRLHV-MYIGRP 131
Query: 191 EPTLHW 196
P + W
Sbjct: 132 VPAMTW 137
Score = 34.3 bits (77), Expect = 0.23, Method: Composition-based stats.
Identities = 22/78 (28%), Positives = 38/78 (48%), Gaps = 10/78 (12%)
Query: 259 RLSCFAEGSPLPSVFWTQEGSQVLM---FPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVC 315
+LSC G PLP + W + G +++ + ++ G H TL + ++ED G + C
Sbjct: 26 QLSCQIVGRPLPDIKWYRFGKELIQSRKYKMSSDGRTH-----TLTVMTEEQEDEGVYTC 80
Query: 316 SALSVAG--STTVRAFLQ 331
A + G T+ + LQ
Sbjct: 81 IATNEVGEVETSSKLLLQ 98
>pdb|1GL4|B Chain B, Nidogen-1 G2PERLECAN IG3 COMPLEX
Length = 98
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 43/88 (48%), Gaps = 6/88 (6%)
Query: 75 ISEPSDATVLSGSVVEFVCRVGG-DPLPTILWRR-DDGKMPTGRAKILD-DRSLQIENVG 131
+ E +V G+ V F+C P T++W R +GK+P+ + +D + L I NV
Sbjct: 14 VEEQRSQSVRPGADVTFICTAKSKSPAYTLVWTRLHNGKLPS---RAMDFNGILTIRNVQ 70
Query: 132 PQDEGLYICDVENLVGSISLRASLTVHL 159
P D G Y+C N+ A+L V +
Sbjct: 71 PSDAGTYVCTGSNMFAMDQGTATLHVQV 98
>pdb|1X4Z|A Chain A, Solution Structure Of The 2nd Fibronectin Type Iii Domain
From Mouse Biregional Cell Adhesion
Molecule-RelatedDOWN- Regulated Oncogenes (Cdon) Binding
Protein
Length = 121
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 33/100 (33%), Positives = 44/100 (44%), Gaps = 7/100 (7%)
Query: 403 MPDSGLF--PGPPAAPVILNTTRGSVTLGWGEPEPRGGGVAPVIGYTVEYFSSDLQTGWV 460
PD G P P P I + SV + W PRG G P+ + VEY W+
Sbjct: 9 QPDHGRLSPPEAPDRPTISTASETSVYVTW---IPRGNGGFPIQSFRVEYKKLKKVGDWI 65
Query: 461 VAAHRITST--SITVSDLKPDTSYMFIVRAENSHGLGIPS 498
+A I + S+ ++ L+ SY F VRA N G PS
Sbjct: 66 LATSAIPPSRLSVEITGLEKGISYKFRVRALNMLGESEPS 105
>pdb|2KKQ|A Chain A, Solution Nmr Structure Of The Ig-Like C2-Type 2 Domain Of
Human Myotilin. Northeast Structural Genomics Target
Hr3158
Length = 116
Score = 39.7 bits (91), Expect = 0.005, Method: Composition-based stats.
Identities = 25/92 (27%), Positives = 40/92 (43%), Gaps = 6/92 (6%)
Query: 72 PFPISEPSDATVLSGSVVEFVCRVGGDPLPTILWRRDDG--KMPTGRAKILDDR----SL 125
P I +P VL G V+ C++ P P + W+R++ + T R + D +L
Sbjct: 16 PMFIYKPQSKKVLEGDSVKLECQISAIPPPKLFWKRNNEMVQFNTDRISLYQDNTGRVTL 75
Query: 126 QIENVGPQDEGLYICDVENLVGSISLRASLTV 157
I++V +D G Y N G + L V
Sbjct: 76 LIKDVNKKDAGWYTVSAVNEAGVTTCNTRLDV 107
Score = 38.9 bits (89), Expect = 0.009, Method: Composition-based stats.
Identities = 24/74 (32%), Positives = 34/74 (45%)
Query: 259 RLSCFAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSAL 318
+L C P P +FW + V + T TL I+ V K+DAG++ SA+
Sbjct: 34 KLECQISAIPPPKLFWKRNNEMVQFNTDRISLYQDNTGRVTLLIKDVNKKDAGWYTVSAV 93
Query: 319 SVAGSTTVRAFLQV 332
+ AG TT L V
Sbjct: 94 NEAGVTTCNTRLDV 107
Score = 30.8 bits (68), Expect = 2.6, Method: Composition-based stats.
Identities = 19/74 (25%), Positives = 33/74 (44%), Gaps = 15/74 (20%)
Query: 164 FRAEPKDTRVASGETALLECGPPKGQPEPTLHWKKNGQFIDLESSK-SL----------- 211
F +P+ +V G++ LEC P P L WK+N + + + + SL
Sbjct: 18 FIYKPQSKKVLEGDSVKLEC-QISAIPPPKLFWKRNNEMVQFNTDRISLYQDNTGRVTLL 76
Query: 212 --DLSRRTLGWLRV 223
D++++ GW V
Sbjct: 77 IKDVNKKDAGWYTV 90
>pdb|3FL7|A Chain A, Crystal Structure Of The Human Ephrin A2 Ectodomain
Length = 536
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 38/122 (31%), Positives = 54/122 (44%), Gaps = 11/122 (9%)
Query: 412 PPAAPVILNTTR--GSVTLGWGEPEPRGGGVAPVIGYTVEY-FSSDLQTGWVVAA----- 463
PP+AP L V L W P+ GG V T E + + G A+
Sbjct: 333 PPSAPHYLTAVGMGAKVELRWTPPQDSGGREDIVYSVTCEQCWPESGECGPCEASVRYSE 392
Query: 464 --HRITSTSITVSDLKPDTSYMFIVRAENSHGLGIPSPVSPITRTLGLNSLVPQHLLDEA 521
H +T TS+TVSDL+P +Y F V A N G+ + S T ++ +N P + E
Sbjct: 393 PPHGLTRTSVTVSDLEPHMNYTFTVEARNGVS-GLVTSRSFRTASVSINQTEPPKVRLEG 451
Query: 522 RA 523
R+
Sbjct: 452 RS 453
Score = 32.7 bits (73), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 35/76 (46%), Gaps = 5/76 (6%)
Query: 425 SVTLGWGEPEPRGGGVAPVIGYTVEYFSSDLQTGWVVAAHRITSTSITVSDLKPDTSYMF 484
S+++ W P P+ + V Y V Y + V R S+T+ DL PDT+Y+
Sbjct: 456 SLSVSWSIPPPQQ---SRVWKYEVTYRKKGDSNSYNV--RRTEGFSVTLDDLAPDTTYLV 510
Query: 485 IVRAENSHGLGIPSPV 500
V+A G G S V
Sbjct: 511 QVQALTQEGQGAGSKV 526
>pdb|2X11|A Chain A, Crystal Structure Of The Complete Epha2 Ectodomain In
Complex With Ephrin A5 Receptor Binding Domain
Length = 545
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 38/122 (31%), Positives = 54/122 (44%), Gaps = 11/122 (9%)
Query: 412 PPAAPVILNTTR--GSVTLGWGEPEPRGGGVAPVIGYTVEY-FSSDLQTGWVVAA----- 463
PP+AP L V L W P+ GG V T E + + G A+
Sbjct: 330 PPSAPHYLTAVGMGAKVELRWTPPQDSGGREDIVYSVTCEQCWPESGECGPCEASVRYSE 389
Query: 464 --HRITSTSITVSDLKPDTSYMFIVRAENSHGLGIPSPVSPITRTLGLNSLVPQHLLDEA 521
H +T TS+TVSDL+P +Y F V A N G+ + S T ++ +N P + E
Sbjct: 390 PPHGLTRTSVTVSDLEPHMNYTFTVEARNGVS-GLVTSRSFRTASVSINQTEPPKVRLEG 448
Query: 522 RA 523
R+
Sbjct: 449 RS 450
Score = 32.3 bits (72), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 35/76 (46%), Gaps = 5/76 (6%)
Query: 425 SVTLGWGEPEPRGGGVAPVIGYTVEYFSSDLQTGWVVAAHRITSTSITVSDLKPDTSYMF 484
S+++ W P P+ + V Y V Y + V R S+T+ DL PDT+Y+
Sbjct: 453 SLSVSWSIPPPQQ---SRVWKYEVTYRKKGDSNSYNV--RRTEGFSVTLDDLAPDTTYLV 507
Query: 485 IVRAENSHGLGIPSPV 500
V+A G G S V
Sbjct: 508 QVQALTQEGQGAGSKV 523
>pdb|2X10|A Chain A, Crystal Structure Of The Complete Epha2 Ectodomain
Length = 545
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 38/122 (31%), Positives = 54/122 (44%), Gaps = 11/122 (9%)
Query: 412 PPAAPVILNTTR--GSVTLGWGEPEPRGGGVAPVIGYTVEY-FSSDLQTGWVVAA----- 463
PP+AP L V L W P+ GG V T E + + G A+
Sbjct: 330 PPSAPHYLTAVGXGAKVELRWTPPQDSGGREDIVYSVTCEQCWPESGECGPCEASVRYSE 389
Query: 464 --HRITSTSITVSDLKPDTSYMFIVRAENSHGLGIPSPVSPITRTLGLNSLVPQHLLDEA 521
H +T TS+TVSDL+P +Y F V A N G+ + S T ++ +N P + E
Sbjct: 390 PPHGLTRTSVTVSDLEPHXNYTFTVEARNGVS-GLVTSRSFRTASVSINQTEPPKVRLEG 448
Query: 522 RA 523
R+
Sbjct: 449 RS 450
Score = 32.3 bits (72), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 35/76 (46%), Gaps = 5/76 (6%)
Query: 425 SVTLGWGEPEPRGGGVAPVIGYTVEYFSSDLQTGWVVAAHRITSTSITVSDLKPDTSYMF 484
S+++ W P P+ + V Y V Y + V R S+T+ DL PDT+Y+
Sbjct: 453 SLSVSWSIPPPQ---QSRVWKYEVTYRKKGDSNSYNV--RRTEGFSVTLDDLAPDTTYLV 507
Query: 485 IVRAENSHGLGIPSPV 500
V+A G G S V
Sbjct: 508 QVQALTQEGQGAGSKV 523
>pdb|2WP3|T Chain T, Crystal Structure Of The Titin M10-Obscurin Like 1 Ig
Complex
pdb|2WWK|T Chain T, Crystal Structure Of The Titin M10-Obscurin Like 1 Ig F17r
Mutant Complex
pdb|2WWM|D Chain D, Crystal Structure Of The Titin M10-Obscurin Like 1 Ig
Complex In Space Group P1
pdb|2WWM|T Chain T, Crystal Structure Of The Titin M10-Obscurin Like 1 Ig
Complex In Space Group P1
pdb|2Y9R|T Chain T, Crystal Structure Of The M10 Domain Of Titin
Length = 102
Score = 39.3 bits (90), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 42/88 (47%), Gaps = 8/88 (9%)
Query: 78 PSDATVLSGSVVEFVCRVGGDPLPTILWR---RDDGKMPTGRAKI--LDD-RSLQIENVG 131
PSD ++ G V+ C G+P P + W R GR I DD +L I +V
Sbjct: 14 PSDISIDEGKVLTVACAFTGEPTPEVTWSCGGRKIHSQEQGRFHIENTDDLTTLIIMDVQ 73
Query: 132 PQDEGLYICDVENLVGSISLRASLTVHL 159
QD GLY + N GS S A++ +H+
Sbjct: 74 KQDGGLYTLSLGNEFGSDS--ATVNIHI 99
Score = 34.7 bits (78), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 35/83 (42%), Gaps = 6/83 (7%)
Query: 256 RVNRLSCFAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEG---TLRIQGVQKEDAGF 312
+V ++C G P P V W+ G ++ G H+ TL I VQK+D G
Sbjct: 23 KVLTVACAFTGEPTPEVTWSCGGRKI---HSQEQGRFHIENTDDLTTLIIMDVQKQDGGL 79
Query: 313 FVCSALSVAGSTTVRAFLQVREF 335
+ S + GS + + +R
Sbjct: 80 YTLSLGNEFGSDSATVNIHIRSI 102
>pdb|1YA5|A Chain A, Crystal Structure Of The Titin Domains Z1z2 In Complex
With Telethonin
pdb|1YA5|B Chain B, Crystal Structure Of The Titin Domains Z1z2 In Complex
With Telethonin
pdb|2F8V|A Chain A, Structure Of Full Length Telethonin In Complex With The
N-Terminus Of Titin
pdb|2F8V|B Chain B, Structure Of Full Length Telethonin In Complex With The
N-Terminus Of Titin
pdb|2F8V|C Chain C, Structure Of Full Length Telethonin In Complex With The
N-Terminus Of Titin
pdb|2F8V|D Chain D, Structure Of Full Length Telethonin In Complex With The
N-Terminus Of Titin
Length = 201
Score = 39.3 bits (90), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 33/112 (29%), Positives = 48/112 (42%), Gaps = 13/112 (11%)
Query: 62 KLIAKEALIKPFPISEPSDATVLSGSVVEFVCRVGGDPLPTILWRRDDGKMPTGR----A 117
+L+ K P + TV GS V RV G P P + + RD ++ + +
Sbjct: 94 ELLVKAETAPPNFVQRLQSMTVRQGSQVRLQVRVTGIPTPVVKFYRDGAEIQSSLDFQIS 153
Query: 118 KILDDRSLQIENVGPQDEGLYICDVENLVGSISLRASLTVHLL-----RDDF 164
+ D SL I P+D G Y + N VG RA+ T LL R++F
Sbjct: 154 QEGDLYSLLIAEAYPEDSGTYSVNATNSVG----RATSTAELLVQGETREEF 201
Score = 32.7 bits (73), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 35/142 (24%), Positives = 55/142 (38%), Gaps = 11/142 (7%)
Query: 83 VLSGSVVEFVCRVGGDPLPTILWRRD-----DGKMPTGRAKILDDRS-LQIENVGPQDEG 136
VL GS F + G P+P + W RD +P + D R+ L I V + G
Sbjct: 17 VLEGSTATFEAHISGFPVPEVSWFRDGQVISTSTLPGVQISFSDGRAKLTIPAVTKANSG 76
Query: 137 LYICDVENLVGSISLRASLTVHLLRD--DFRAEPKDTRVASGETALLECGPPKGQPEPTL 194
Y N G + A L V +F + V G L+ G P P +
Sbjct: 77 RYSLKATNGSGQATSTAELLVKAETAPPNFVQRLQSMTVRQGSQVRLQV-RVTGIPTPVV 135
Query: 195 HWKKNGQFIDLESSKSLDLSRR 216
+ ++G +++SS +S+
Sbjct: 136 KFYRDG--AEIQSSLDFQISQE 155
>pdb|1I1R|A Chain A, Crystal Structure Of A CytokineRECEPTOR COMPLEX
Length = 303
Score = 39.3 bits (90), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 40/90 (44%), Gaps = 7/90 (7%)
Query: 410 PGPPAAPVILNTTRGS--VTLGWGEPEPRGGGVAPVIGYTVEYFSSDLQTGWVVAAHRIT 467
P PP ++N+ S + L W P + ++ Y ++Y + D T +
Sbjct: 200 PNPPHNLSVINSEELSSILKLTWTNPSIKS---VIILKYNIQYRTKDASTWSQIPPEDTA 256
Query: 468 ST--SITVSDLKPDTSYMFIVRAENSHGLG 495
ST S TV DLKP T Y+F +R G G
Sbjct: 257 STRSSFTVQDLKPFTEYVFRIRCMKEDGKG 286
>pdb|3KNB|A Chain A, Crystal Structure Of The Titin C-Terminus In Complex With
Obscurin- Like 1
pdb|3Q5O|A Chain A, Crystal Structure Of Human Titin Domain M10
pdb|3Q5O|B Chain B, Crystal Structure Of Human Titin Domain M10
Length = 100
Score = 39.3 bits (90), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 42/88 (47%), Gaps = 8/88 (9%)
Query: 78 PSDATVLSGSVVEFVCRVGGDPLPTILWR---RDDGKMPTGRAKI--LDD-RSLQIENVG 131
PSD ++ G V+ C G+P P + W R GR I DD +L I +V
Sbjct: 12 PSDISIDEGKVLTVACAFTGEPTPEVTWSCGGRKIHSQEQGRFHIENTDDLTTLIIMDVQ 71
Query: 132 PQDEGLYICDVENLVGSISLRASLTVHL 159
QD GLY + N GS S A++ +H+
Sbjct: 72 KQDGGLYTLSLGNEFGSDS--ATVNIHI 97
Score = 34.7 bits (78), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 35/83 (42%), Gaps = 6/83 (7%)
Query: 256 RVNRLSCFAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEG---TLRIQGVQKEDAGF 312
+V ++C G P P V W+ G ++ G H+ TL I VQK+D G
Sbjct: 21 KVLTVACAFTGEPTPEVTWSCGGRKI---HSQEQGRFHIENTDDLTTLIIMDVQKQDGGL 77
Query: 313 FVCSALSVAGSTTVRAFLQVREF 335
+ S + GS + + +R
Sbjct: 78 YTLSLGNEFGSDSATVNIHIRSI 100
>pdb|1P9M|A Chain A, Crystal Structure Of The Hexameric Human Il-6/il-6 Alpha
Receptor/gp130 Complex
Length = 299
Score = 39.3 bits (90), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 40/90 (44%), Gaps = 7/90 (7%)
Query: 410 PGPPAAPVILNTTRGS--VTLGWGEPEPRGGGVAPVIGYTVEYFSSDLQTGWVVAAHRIT 467
P PP ++N+ S + L W P + ++ Y ++Y + D T +
Sbjct: 200 PNPPHNLSVINSEELSSILKLTWTNPSIKS---VIILKYNIQYRTKDASTWSQIPPEDTA 256
Query: 468 ST--SITVSDLKPDTSYMFIVRAENSHGLG 495
ST S TV DLKP T Y+F +R G G
Sbjct: 257 STRSSFTVQDLKPFTEYVFRIRCMKEDGKG 286
>pdb|2YRZ|A Chain A, Solution Structure Of The Fibronectin Type Iii Domain Of
Human Integrin Beta-4
Length = 118
Score = 39.3 bits (90), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 35/99 (35%), Positives = 47/99 (47%), Gaps = 17/99 (17%)
Query: 405 DSGLFPGPPAAPVILNTTR---GSVTLGWGEPEPRGGGVAPVIGYTVEYFSSDLQTGWVV 461
DS L G P P L + S+ + W EP P+ GY+VEY L G +
Sbjct: 10 DSRLTAGVPDTPTRLVFSALGPTSLRVSWQEPRCE----RPLQGYSVEY---QLLNGGEL 62
Query: 462 AAHRIT-----STSITVSDLKPDTSYMFIVRAENSHGLG 495
HR+ TS+ V DL P+ SY+F VRA++ G G
Sbjct: 63 --HRLNIPNPAQTSVVVEDLLPNHSYVFRVRAQSQEGWG 99
>pdb|1PVH|A Chain A, Crystal Structure Of Leukemia Inhibitory Factor In Complex
With Gp130
pdb|1PVH|C Chain C, Crystal Structure Of Leukemia Inhibitory Factor In Complex
With Gp130
Length = 201
Score = 38.9 bits (89), Expect = 0.008, Method: Composition-based stats.
Identities = 27/90 (30%), Positives = 40/90 (44%), Gaps = 7/90 (7%)
Query: 410 PGPPAAPVILNTTRGS--VTLGWGEPEPRGGGVAPVIGYTVEYFSSDLQTGWVVAAHRIT 467
P PP ++N+ S + L W P + ++ Y ++Y + D T +
Sbjct: 100 PNPPHNLSVINSEELSSILKLTWTNPSIKS---VIILKYNIQYRTKDASTWSQIPPEDTA 156
Query: 468 ST--SITVSDLKPDTSYMFIVRAENSHGLG 495
ST S TV DLKP T Y+F +R G G
Sbjct: 157 STRSSFTVQDLKPFTEYVFRIRCMKEDGKG 186
>pdb|3L5H|A Chain A, Crystal Structure Of The Full Ectodomain Of Human Gp130:
New Insights Into The Molecular Assembly Of Receptor
Complexes
Length = 589
Score = 38.9 bits (89), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 40/90 (44%), Gaps = 7/90 (7%)
Query: 410 PGPPAAPVILNTTRGS--VTLGWGEPEPRGGGVAPVIGYTVEYFSSDLQTGWVVAAHRIT 467
P PP ++N+ S + L W P + ++ Y ++Y + D T +
Sbjct: 199 PNPPHNLSVINSEELSSILKLTWTNPSIKS---VIILKYNIQYRTKDASTWSQIPPEDTA 255
Query: 468 ST--SITVSDLKPDTSYMFIVRAENSHGLG 495
ST S TV DLKP T Y+F +R G G
Sbjct: 256 STRSSFTVQDLKPFTEYVFRIRCMKEDGKG 285
>pdb|2A38|A Chain A, Crystal Structure Of The N-Terminus Of Titin
pdb|2A38|B Chain B, Crystal Structure Of The N-Terminus Of Titin
pdb|2A38|C Chain C, Crystal Structure Of The N-Terminus Of Titin
Length = 194
Score = 38.9 bits (89), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 31/103 (30%), Positives = 44/103 (42%), Gaps = 8/103 (7%)
Query: 62 KLIAKEALIKPFPISEPSDATVLSGSVVEFVCRVGGDPLPTILWRRDDGKMPTGR----A 117
+L+ K P + TV GS V RV G P P + + RD ++ + +
Sbjct: 94 ELLVKAETAPPNFVQRLQSMTVRQGSQVRLQVRVTGIPTPVVKFYRDGAEIQSSLDFQIS 153
Query: 118 KILDDRSLQIENVGPQDEGLYICDVENLVGSISLRASLTVHLL 160
+ D SL I P+D G Y + N VG RA+ T LL
Sbjct: 154 QEGDLYSLLIAEAYPEDSGTYSVNATNSVG----RATSTAELL 192
Score = 32.7 bits (73), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 35/142 (24%), Positives = 55/142 (38%), Gaps = 11/142 (7%)
Query: 83 VLSGSVVEFVCRVGGDPLPTILWRRD-----DGKMPTGRAKILDDRS-LQIENVGPQDEG 136
VL GS F + G P+P + W RD +P + D R+ L I V + G
Sbjct: 17 VLEGSTATFEAHISGFPVPEVSWFRDGQVISTSTLPGVQISFSDGRAKLTIPAVTKANSG 76
Query: 137 LYICDVENLVGSISLRASLTVHLLRD--DFRAEPKDTRVASGETALLECGPPKGQPEPTL 194
Y N G + A L V +F + V G L+ G P P +
Sbjct: 77 RYSLKATNGSGQATSTAELLVKAETAPPNFVQRLQSMTVRQGSQVRLQV-RVTGIPTPVV 135
Query: 195 HWKKNGQFIDLESSKSLDLSRR 216
+ ++G +++SS +S+
Sbjct: 136 KFYRDG--AEIQSSLDFQISQE 155
>pdb|1BQU|A Chain A, Cytokyne-Binding Region Of Gp130
pdb|1BQU|B Chain B, Cytokyne-Binding Region Of Gp130
Length = 215
Score = 38.9 bits (89), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 40/90 (44%), Gaps = 7/90 (7%)
Query: 410 PGPPAAPVILNTTRGS--VTLGWGEPEPRGGGVAPVIGYTVEYFSSDLQTGWVVAAHRIT 467
P PP ++N+ S + L W P + ++ Y ++Y + D T +
Sbjct: 104 PNPPHNLSVINSEELSSILKLTWTNPSIKS---VIILKYNIQYRTKDASTWSQIPPEDTA 160
Query: 468 ST--SITVSDLKPDTSYMFIVRAENSHGLG 495
ST S TV DLKP T Y+F +R G G
Sbjct: 161 STRSSFTVQDLKPFTEYVFRIRCMKEDGKG 190
>pdb|3MX0|A Chain A, Crystal Structure Of Epha2 Ectodomain In Complex With
Ephrin-A5
pdb|3MX0|C Chain C, Crystal Structure Of Epha2 Ectodomain In Complex With
Ephrin-A5
Length = 409
Score = 38.9 bits (89), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 31/89 (34%), Positives = 40/89 (44%), Gaps = 10/89 (11%)
Query: 412 PPAAPVILNTTR--GSVTLGWGEPEPRGGGVAPVIGYTVEY-FSSDLQTGWVVAA----- 463
PP+AP L V L W P+ GG V T E + + G A+
Sbjct: 302 PPSAPHYLTAVGMGAKVELRWTPPQDSGGREDIVYSVTCEQCWPESGECGPCEASVRYSE 361
Query: 464 --HRITSTSITVSDLKPDTSYMFIVRAEN 490
H +T TS+TVSDL+P +Y F V A N
Sbjct: 362 PPHGLTRTSVTVSDLEPHMNYTFTVEARN 390
>pdb|1BIH|A Chain A, Crystal Structure Of The Insect Immune Protein Hemolin: A
New Domain Arrangement With Implications For Homophilic
Adhesion
pdb|1BIH|B Chain B, Crystal Structure Of The Insect Immune Protein Hemolin: A
New Domain Arrangement With Implications For Homophilic
Adhesion
Length = 395
Score = 38.5 bits (88), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 41/176 (23%), Positives = 67/176 (38%), Gaps = 20/176 (11%)
Query: 44 SIFGSVLGARGALSDDQWKLIAKE--ALIK--------PFPISEPSDATVLSGSVVEFVC 93
I+ V A+ A D++ L+ E + K P P D +G V C
Sbjct: 175 DIYKYVCTAKNAAVDEEVVLVEYEIKGVTKDNSGYKGEPVPQYVSKDMMAKAGDVTMIYC 234
Query: 94 RVGGDPLPTILWRRDDGKMPTG-------RAKILDDRSLQIENVGPQDEGLYICDVENLV 146
G +P+ + ++ GK G R + L + P+DEG+Y C+V+N V
Sbjct: 235 MYGSNPMGYPNYFKN-GKDVNGNPEDRITRHNRTSGKRLLFKTTLPEDEGVYTCEVDNGV 293
Query: 147 GSISLRASLTVHLLRDDFRAEP-KDTRVASGETALLECGPPKGQPEPTLHWKKNGQ 201
G + + + +P K V G+ + C G P P + W N +
Sbjct: 294 GKPQKHSLKLTVVSAPKYEQKPEKVIVVKQGQDVTIPC-KVTGLPAPNVVWSHNAK 348
Score = 37.7 bits (86), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 33/76 (43%), Gaps = 1/76 (1%)
Query: 83 VLSGSVVEFVCRVGGDPLPTILWRRDDGKMPTGRAKILDDRSLQIENVGPQDEGLYICDV 142
V G V C+V G P P ++W + + GRA + D L I+ V D+G Y C
Sbjct: 321 VKQGQDVTIPCKVTGLPAPNVVWSHNAKPLSGGRATVT-DSGLVIKGVKNGDKGYYGCRA 379
Query: 143 ENLVGSISLRASLTVH 158
N G + V+
Sbjct: 380 TNEHGDKYFETLVQVN 395
Score = 35.4 bits (80), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 24/95 (25%), Positives = 41/95 (43%), Gaps = 8/95 (8%)
Query: 239 PRYIGRKMASLLIWNHPRVNRLSCFAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEG 298
P+Y +K +++ + + C G P P+V W+ + + G VT G
Sbjct: 309 PKY-EQKPEKVIVVKQGQDVTIPCKVTGLPAPNVVWSHNAKPL------SGGRATVTDSG 361
Query: 299 TLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVR 333
L I+GV+ D G++ C A + G +QV
Sbjct: 362 -LVIKGVKNGDKGYYGCRATNEHGDKYFETLVQVN 395
Score = 28.9 bits (63), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 37/140 (26%), Positives = 54/140 (38%), Gaps = 16/140 (11%)
Query: 70 IKPFPISEPSDATVL----SGSVVEFVCRVGGDPLPTILWRRDDGK----MPTGRAKILD 121
+ +P+ + A VL + +V+E + G D W++D GK A D
Sbjct: 3 VDKYPVLKDQPAEVLFRENNPTVLECIIE-GNDQGVKYSWKKD-GKSYNWQEHNAALRKD 60
Query: 122 DRSLQIENVGPQDEGLYICDVENLVGSISLRASLTVHLLRDDFRAEPKDTRVAS---GET 178
+ SL DEG Y C E G S R + + A P T + G
Sbjct: 61 EGSLVFLRPQASDEGHYQCFAETPAGVASSRV---ISFRKTYLIASPAKTHEKTPIEGRP 117
Query: 179 ALLECGPPKGQPEPTLHWKK 198
L+C P P+P + WKK
Sbjct: 118 FQLDCVLPNAYPKPLITWKK 137
>pdb|2YUX|A Chain A, Solution Structure Of 3rd Fibronectin Type Three Domain Of
Slow Type Myosin-Binding Protein C
Length = 120
Score = 38.1 bits (87), Expect = 0.014, Method: Composition-based stats.
Identities = 26/85 (30%), Positives = 37/85 (43%), Gaps = 3/85 (3%)
Query: 410 PGPPAAPVILNTTRGSVTLGWGEPEPRGGGVAPVIGYTVEYFSSDLQTGWVVAAHRITST 469
PGPP I + +V L W P+ G A + GYT++ + W T
Sbjct: 18 PGPPQIVKIEDVWGENVALTWTPPKDDGN--AAITGYTIQK-ADKKSMEWFTVIEHYHRT 74
Query: 470 SITVSDLKPDTSYMFIVRAENSHGL 494
S T+++L Y F V +EN GL
Sbjct: 75 SATITELVIGNEYYFRVFSENMCGL 99
>pdb|1BJ8|A Chain A, Third N-Terminal Domain Of Gp130, Nmr, Minimized Average
Structure
Length = 109
Score = 38.1 bits (87), Expect = 0.015, Method: Composition-based stats.
Identities = 27/90 (30%), Positives = 40/90 (44%), Gaps = 7/90 (7%)
Query: 410 PGPPAAPVILNTTRGS--VTLGWGEPEPRGGGVAPVIGYTVEYFSSDLQTGWVVAAHRIT 467
P PP ++N+ S + L W P + ++ Y ++Y + D T +
Sbjct: 6 PNPPHNLSVINSEELSSILKLTWTNPSIKS---VIILKYNIQYRTKDASTWSQIPPEDTA 62
Query: 468 ST--SITVSDLKPDTSYMFIVRAENSHGLG 495
ST S TV DLKP T Y+F +R G G
Sbjct: 63 STRSSFTVQDLKPFTEYVFRIRCMKEDGKG 92
>pdb|3MJ6|A Chain A, Crystal Structure Of The Gammadelta T Cell Costimulatory
Receptor Junctional Adhesion Molecule-Like Protein, Jaml
pdb|3MJ7|A Chain A, Crystal Structure Of The Complex Of Jaml And Coxsackie And
Adenovirus Receptor, Car
pdb|3MJ9|A Chain A, Crystal Structure Of Jaml In Complex With The Stimulatory
Antibody Hl4e10
Length = 268
Score = 37.7 bits (86), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 25/95 (26%), Positives = 47/95 (49%), Gaps = 13/95 (13%)
Query: 98 DPLPTILWRRDDGKMPTGRAK---------ILDDRSLQIENVGPQDEGLYICDVENLVGS 148
D +L+ + +PTGR + +D SL +++V DEG+Y C++ S
Sbjct: 50 DASEYVLFYYSNLSVPTGRFQNRSHLVGDTFHNDGSLLLQDVQKADEGIYTCEIRLKNES 109
Query: 149 ISLRASLTVHLLRDDFRAEPKDTRVASGETALLEC 183
+ ++ + + +L + EP+D RV G+T + C
Sbjct: 110 MVMKKPVELWVLPE----EPRDLRVRVGDTTQMRC 140
Score = 36.2 bits (82), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 13/45 (28%), Positives = 30/45 (66%), Gaps = 2/45 (4%)
Query: 121 DDRSLQIENVGPQDEGLYICDVENLVGSISLRASLTVHLLRDDFR 165
+D S++++ V D+G+Y C + VG + R ++ +H+++D+F+
Sbjct: 199 NDGSIKLQTVKESDQGIYTCSI--YVGKLESRKTIVLHVVQDEFQ 241
>pdb|2V9T|A Chain A, Complex Between The Second Lrr Domain Of Slit2 And The
First Ig Domain From Robo1
Length = 117
Score = 37.4 bits (85), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 30/98 (30%), Positives = 40/98 (40%), Gaps = 12/98 (12%)
Query: 72 PFPISEPSDATVLSGSVVEFVCRVGGDPLPTILWRRD------DGKMPTGRAKILDDRSL 125
P + PSD V G C+ G P PTI W + D P +L SL
Sbjct: 10 PRIVEHPSDLIVSKGEPATLNCKAEGRPTPTIEWYKGGERVETDKDDPRSHRMLLPSGSL 69
Query: 126 QIENV-----GPQDEGLYICDVENLVG-SISLRASLTV 157
+ DEG+Y+C N +G ++S ASL V
Sbjct: 70 FFLRIVHGRKSRPDEGVYVCVARNYLGEAVSHDASLEV 107
Score = 34.3 bits (77), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 33/71 (46%), Gaps = 5/71 (7%)
Query: 260 LSCFAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGT---LRIQGVQKE--DAGFFV 314
L+C AEG P P++ W + G +V + H + G+ LRI +K D G +V
Sbjct: 29 LNCKAEGRPTPTIEWYKGGERVETDKDDPRSHRMLLPSGSLFFLRIVHGRKSRPDEGVYV 88
Query: 315 CSALSVAGSTT 325
C A + G
Sbjct: 89 CVARNYLGEAV 99
Score = 33.1 bits (74), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 32/60 (53%), Gaps = 5/60 (8%)
Query: 168 PKDTRVASGETALLECGPPKGQPEPTLHWKKNGQFIDLES----SKSLDLSRRTLGWLRV 223
P D V+ GE A L C +G+P PT+ W K G+ ++ + S + L +L +LR+
Sbjct: 16 PSDLIVSKGEPATLNCKA-EGRPTPTIEWYKGGERVETDKDDPRSHRMLLPSGSLFFLRI 74
>pdb|2DJU|A Chain A, Solution Structures Of The Fn3 Domain Of Human Receptor-
Type Tyrosine-Protein Phosphatase F
Length = 106
Score = 37.0 bits (84), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 41/89 (46%), Gaps = 6/89 (6%)
Query: 410 PGPPAAPVILNTTRGSVTLGWGEPEPRGGGVAPVIGYTVEYFSSDLQTGWVVAAHRITST 469
P PP V+ TT SVTL W G PV Y ++Y ++ + G + +T
Sbjct: 8 PKPPIDLVVTETTATSVTLTWDS-----GNSEPVTYYGIQYRAAGTE-GPFQEVDGVATT 61
Query: 470 SITVSDLKPDTSYMFIVRAENSHGLGIPS 498
++ L P + Y F V A NS G G PS
Sbjct: 62 RYSIGGLSPFSEYAFRVLAVNSIGRGPPS 90
>pdb|1U2H|A Chain A, X-Ray Structure Of The N-Terminally Truncated Human Apep-1
Length = 99
Score = 36.6 bits (83), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 35/78 (44%), Gaps = 9/78 (11%)
Query: 260 LSCFAEGSPLPSVFWTQEGSQVL----MFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVC 315
+S +G P P V W + V F A G L LRI ++ DAGF+ C
Sbjct: 25 MSIRVQGEPKPVVSWLRNRQPVRPDQRRFAEEAEGGLC-----RLRILAAERGDAGFYTC 79
Query: 316 SALSVAGSTTVRAFLQVR 333
A++ G+ A L+VR
Sbjct: 80 KAVNEYGARQCEARLEVR 97
Score = 30.8 bits (68), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 33/84 (39%), Gaps = 5/84 (5%)
Query: 80 DATVLSGSVVEFVCRVGGDPLPTILWRRDDGKMPTGRAKILDDRS-----LQIENVGPQD 134
D +V G V RV G+P P + W R+ + + + ++ L+I D
Sbjct: 14 DQSVREGQDVIMSIRVQGEPKPVVSWLRNRQPVRPDQRRFAEEAEGGLCRLRILAAERGD 73
Query: 135 EGLYICDVENLVGSISLRASLTVH 158
G Y C N G+ A L V
Sbjct: 74 AGFYTCKAVNEYGARQCEARLEVR 97
>pdb|3P4L|A Chain A, Crystal Structure Of A Hemojuvelin-Binding Fragment Of
Neogenin
Length = 211
Score = 36.2 bits (82), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 45/97 (46%), Gaps = 16/97 (16%)
Query: 408 LFPGPPAAPVILNTTRG---SVTLGWGEPEPRGGGVAPVIGYTVEYFSSDLQT---GWV- 460
L P P V + + G ++ + W P G + GY + Y+S+D+ WV
Sbjct: 103 LVPTSPPKDVTVVSKEGKPKTIIVNWQPPSEANGKIT---GYII-YYSTDVNAEIHDWVI 158
Query: 461 --VAAHRITSTSITVSDLKPDTSYMFIVRAENSHGLG 495
V +R+T + +L DT Y F ++A NS G+G
Sbjct: 159 EPVVGNRLTHQ---IQELTLDTPYYFKIQARNSKGMG 192
>pdb|1KOA|A Chain A, Twitchin Kinase Fragment (C.Elegans), Autoregulated
Protein Kinase And Immunoglobulin Domains
Length = 491
Score = 35.8 bits (81), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 26/102 (25%), Positives = 39/102 (38%), Gaps = 4/102 (3%)
Query: 71 KPFPISEPSDATVLSGSVVEFVCRVGGDPLPTILWRRDDGKMPTGRAKIL----DDRSLQ 126
+P I +P V G F CRV P + W +DD ++ + +D L
Sbjct: 376 QPRFIVKPYGTEVGEGQSANFYCRVIASSPPVVTWHKDDRELKQSVKYMKRYNGNDYGLT 435
Query: 127 IENVGPQDEGLYICDVENLVGSISLRASLTVHLLRDDFRAEP 168
I V D+G Y +N G+ L V + + EP
Sbjct: 436 INRVKGDDKGEYTVRAKNSYGTKEEIVFLNVTRHSEPLKFEP 477
>pdb|2ILL|A Chain A, Anomalous Substructure Of Titin-A168169
Length = 195
Score = 35.8 bits (81), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 33/135 (24%), Positives = 56/135 (41%), Gaps = 11/135 (8%)
Query: 91 FVCRVGGDPLPTILWRRDDGKMPTG--RAKILDDR----SLQIENVGPQDEGLYICDVEN 144
VC+V G P P + W R ++ + +I + + L I +V D +Y N
Sbjct: 22 LVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGGYHQLIIASVTDDDATVYQVRATN 81
Query: 145 LVGSISLRASLTVHLLRDDFRAEPKD----TRVASGETALLECGPPKGQPEPTLHWKKNG 200
GS+S ASL V + + + GE ++ P G+P+P + W+K
Sbjct: 82 QGGSVSGTASLEVEVPAKIHLPKTLEGMGAVHALRGEVVSIKI-PFSGKPDPVITWQKGQ 140
Query: 201 QFIDLESSKSLDLSR 215
ID + ++R
Sbjct: 141 DLIDNNGHYQVIVTR 155
>pdb|2J8H|A Chain A, Structure Of The Immunoglobulin Tandem Repeat A168-A169 Of
Titin
pdb|2J8O|A Chain A, Structure Of The Immunoglobulin Tandem Repeat Of Titin
A168- A169
pdb|2J8O|B Chain B, Structure Of The Immunoglobulin Tandem Repeat Of Titin
A168- A169
Length = 197
Score = 35.8 bits (81), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 33/135 (24%), Positives = 56/135 (41%), Gaps = 11/135 (8%)
Query: 91 FVCRVGGDPLPTILWRRDDGKMPTG--RAKILDDR----SLQIENVGPQDEGLYICDVEN 144
VC+V G P P + W R ++ + +I + + L I +V D +Y N
Sbjct: 24 LVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGGYHQLIIASVTDDDATVYQVRATN 83
Query: 145 LVGSISLRASLTVHLLRDDFRAEPKD----TRVASGETALLECGPPKGQPEPTLHWKKNG 200
GS+S ASL V + + + GE ++ P G+P+P + W+K
Sbjct: 84 QGGSVSGTASLEVEVPAKIHLPKTLEGMGAVHALRGEVVSIKI-PFSGKPDPVITWQKGQ 142
Query: 201 QFIDLESSKSLDLSR 215
ID + ++R
Sbjct: 143 DLIDNNGHYQVIVTR 157
>pdb|2CRZ|A Chain A, Solution Structure Of The Fifth Fniii Domain Of Human
Fibronectin Type Iii Domain Containing Protein 3a
Length = 110
Score = 35.0 bits (79), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 34/70 (48%), Gaps = 4/70 (5%)
Query: 426 VTLGWGEPEPRGGGVAPVIGYTVEYFSSDLQTGWVVAAHRITSTSITVSDLKPDTSYMFI 485
+ L WG P GG +P+ Y+VE S ++ ++ + TVS L P +Y F
Sbjct: 26 IQLRWGPPLVDGG--SPISCYSVEM--SPIEKDEPREVYQGSEVECTVSSLLPGKTYSFR 81
Query: 486 VRAENSHGLG 495
+RA N G G
Sbjct: 82 LRAANKMGFG 91
>pdb|1WF5|A Chain A, Solution Structure Of The First Fn3 Domain Of Sidekick-2
Protein
Length = 121
Score = 35.0 bits (79), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 43/89 (48%), Gaps = 5/89 (5%)
Query: 409 FPGPPAAPVILNTT--RGSVTLGWGEPEPRGGGVAPVIGYTVEYFSSDLQTGWVVAAHRI 466
P P PV +T R ++ L W +P G +P+I Y +E ++ ++A+
Sbjct: 17 LPHAPEHPVATLSTVERRAINLTWTKP---FDGNSPLIRYILEMSENNAPWTVLLASVDP 73
Query: 467 TSTSITVSDLKPDTSYMFIVRAENSHGLG 495
+TS+TV L P SY F + A N G G
Sbjct: 74 KATSVTVKGLVPARSYQFRLCAVNDVGKG 102
>pdb|2ENS|A Chain A, Solution Structure Of The Third Ig-Like Domain From Human
Advanced Glycosylation End Product-Specific Receptor
Length = 96
Score = 35.0 bits (79), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 26/66 (39%), Gaps = 5/66 (7%)
Query: 75 ISEPSDATVLSGSVVEFVCRVGGDPLPTILWRRDDGKMPTGRAKILDDRSLQIENVGPQD 134
+ EP V G V C V P P I W +D + L + +GPQD
Sbjct: 14 VVEPEGGAVAPGGTVTLTCEVPAQPSPQIHWMKDGVP-----LPLPPSPVLILPEIGPQD 68
Query: 135 EGLYIC 140
+G Y C
Sbjct: 69 QGTYSC 74
Score = 32.0 bits (71), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 16/34 (47%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Query: 167 EPKDTRVASGETALLECGPPKGQPEPTLHWKKNG 200
EP+ VA G T L C P QP P +HW K+G
Sbjct: 16 EPEGGAVAPGGTVTLTCEVPA-QPSPQIHWMKDG 48
>pdb|2LE9|A Chain A, Ragec2-S100a13 Tetrameric Complex
pdb|2LE9|D Chain D, Ragec2-S100a13 Tetrameric Complex
Length = 93
Score = 35.0 bits (79), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 26/66 (39%), Gaps = 5/66 (7%)
Query: 75 ISEPSDATVLSGSVVEFVCRVGGDPLPTILWRRDDGKMPTGRAKILDDRSLQIENVGPQD 134
+ EP V G V C V P P I W +D + L + +GPQD
Sbjct: 7 VVEPEGGAVAPGGTVTLTCEVPAQPSPQIHWMKDGVP-----LPLPPSPVLILPEIGPQD 61
Query: 135 EGLYIC 140
+G Y C
Sbjct: 62 QGTYSC 67
Score = 31.6 bits (70), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 16/34 (47%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Query: 167 EPKDTRVASGETALLECGPPKGQPEPTLHWKKNG 200
EP+ VA G T L C P QP P +HW K+G
Sbjct: 9 EPEGGAVAPGGTVTLTCEVPA-QPSPQIHWMKDG 41
>pdb|2IJ0|E Chain E, Structural Basis Of T Cell Specificity And Activation By
The Bacterial Superantigen Toxic Shock Syndrome Toxin-1
pdb|2IJ0|C Chain C, Structural Basis Of T Cell Specificity And Activation By
The Bacterial Superantigen Toxic Shock Syndrome Toxin-1
Length = 118
Score = 34.7 bits (78), Expect = 0.18, Method: Composition-based stats.
Identities = 14/27 (51%), Positives = 20/27 (74%)
Query: 299 TLRIQGVQKEDAGFFVCSALSVAGSTT 325
TL + ED+GF+VCSAL+ +GS+T
Sbjct: 78 TLTVTSAHPEDSGFYVCSALAGSGSST 104
>pdb|2WP3|O Chain O, Crystal Structure Of The Titin M10-Obscurin Like 1 Ig
Complex
pdb|2WWM|C Chain C, Crystal Structure Of The Titin M10-Obscurin Like 1 Ig
Complex In Space Group P1
pdb|2WWM|O Chain O, Crystal Structure Of The Titin M10-Obscurin Like 1 Ig
Complex In Space Group P1
Length = 109
Score = 34.3 bits (77), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 37/84 (44%), Gaps = 4/84 (4%)
Query: 78 PSDATVLSGSVVEFVCRVGGDPLPTILWRRDDGKMPTG-RAKILDD---RSLQIENVGPQ 133
P V+SG+ E C V G+P P ++W + ++ R D L + P
Sbjct: 21 PRPVRVVSGAEAELKCVVLGEPPPVVVWEKGGQQLAASERLSFPADGAEHGLLLTAALPT 80
Query: 134 DEGLYICDVENLVGSISLRASLTV 157
D G+Y+C N G A++TV
Sbjct: 81 DAGVYVCRARNAAGEAYAAAAVTV 104
Score = 31.2 bits (69), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 25/64 (39%), Gaps = 12/64 (18%)
Query: 259 RLSCFAEGSPLPSVFWTQEGSQV-----LMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFF 313
L C G P P V W + G Q+ L FP + H L + DAG +
Sbjct: 33 ELKCVVLGEPPPVVVWEKGGQQLAASERLSFPADGAEH-------GLLLTAALPTDAGVY 85
Query: 314 VCSA 317
VC A
Sbjct: 86 VCRA 89
Score = 29.3 bits (64), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 25/46 (54%), Gaps = 3/46 (6%)
Query: 168 PKDTRVASGETALLECGPPKGQPEPTLHWKKNGQFIDLESSKSLDL 213
P+ RV SG A L+C G+P P + W+K GQ L +S+ L
Sbjct: 21 PRPVRVVSGAEAELKCVV-LGEPPPVVVWEKGGQ--QLAASERLSF 63
>pdb|2WWK|O Chain O, Crystal Structure Of The Titin M10-Obscurin Like 1 Ig F17r
Mutant Complex
Length = 109
Score = 34.3 bits (77), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 39/90 (43%), Gaps = 4/90 (4%)
Query: 72 PFPISEPSDATVLSGSVVEFVCRVGGDPLPTILWRRDDGKMPTG-RAKILDD---RSLQI 127
P + P V+SG+ E C V G+P P ++W + ++ R D L +
Sbjct: 15 PCFLRRPRPVRVVSGAEAELKCVVLGEPPPVVVWEKGGQQLAASERLSFPADGAEHGLLL 74
Query: 128 ENVGPQDEGLYICDVENLVGSISLRASLTV 157
P D G+Y+C N G A++TV
Sbjct: 75 TAALPTDAGVYVCRARNAAGEAYAAAAVTV 104
Score = 31.6 bits (70), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 25/63 (39%), Gaps = 12/63 (19%)
Query: 260 LSCFAEGSPLPSVFWTQEGSQV-----LMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFV 314
L C G P P V W + G Q+ L FP + H L + DAG +V
Sbjct: 34 LKCVVLGEPPPVVVWEKGGQQLAASERLSFPADGAEH-------GLLLTAALPTDAGVYV 86
Query: 315 CSA 317
C A
Sbjct: 87 CRA 89
Score = 29.6 bits (65), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 26/50 (52%), Gaps = 3/50 (6%)
Query: 164 FRAEPKDTRVASGETALLECGPPKGQPEPTLHWKKNGQFIDLESSKSLDL 213
F P+ RV SG A L+C G+P P + W+K GQ L +S+ L
Sbjct: 17 FLRRPRPVRVVSGAEAELKCVV-LGEPPPVVVWEKGGQ--QLAASERLSF 63
>pdb|3KNB|B Chain B, Crystal Structure Of The Titin C-Terminus In Complex With
Obscurin- Like 1
Length = 107
Score = 34.3 bits (77), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 37/84 (44%), Gaps = 4/84 (4%)
Query: 78 PSDATVLSGSVVEFVCRVGGDPLPTILWRRDDGKMPTG-RAKILDD---RSLQIENVGPQ 133
P V+SG+ E C V G+P P ++W + ++ R D L + P
Sbjct: 20 PRPVRVVSGAEAELKCVVLGEPPPVVVWEKGGQQLAASERLSFPADGAEHGLLLTAALPT 79
Query: 134 DEGLYICDVENLVGSISLRASLTV 157
D G+Y+C N G A++TV
Sbjct: 80 DAGVYVCRARNAAGEAYAAAAVTV 103
Score = 31.2 bits (69), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 25/64 (39%), Gaps = 12/64 (18%)
Query: 259 RLSCFAEGSPLPSVFWTQEGSQV-----LMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFF 313
L C G P P V W + G Q+ L FP + H L + DAG +
Sbjct: 32 ELKCVVLGEPPPVVVWEKGGQQLAASERLSFPADGAEH-------GLLLTAALPTDAGVY 84
Query: 314 VCSA 317
VC A
Sbjct: 85 VCRA 88
Score = 28.9 bits (63), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 25/46 (54%), Gaps = 3/46 (6%)
Query: 168 PKDTRVASGETALLECGPPKGQPEPTLHWKKNGQFIDLESSKSLDL 213
P+ RV SG A L+C G+P P + W+K GQ L +S+ L
Sbjct: 20 PRPVRVVSGAEAELKCVV-LGEPPPVVVWEKGGQ--QLAASERLSF 62
>pdb|2E9W|A Chain A, Crystal Structure Of The Extracellular Domain Of Kit In
Complex With Stem Cell Factor (Scf)
pdb|2E9W|B Chain B, Crystal Structure Of The Extracellular Domain Of Kit In
Complex With Stem Cell Factor (Scf)
Length = 489
Score = 33.9 bits (76), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 30/62 (48%), Gaps = 3/62 (4%)
Query: 274 WTQEGSQVLM---FPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRAFL 330
W +E SQ + + +G + ++ TL I + D+G F+C A + GS V L
Sbjct: 221 WKRENSQTKLQEKYNSWHHGDFNYERQATLTISSARVNDSGVFMCYANNTFGSANVTTTL 280
Query: 331 QV 332
+V
Sbjct: 281 EV 282
>pdb|2EC8|A Chain A, Crystal Structure Of The Exctracellular Domain Of The
Receptor Tyrosine Kinase, Kit
Length = 524
Score = 33.9 bits (76), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 30/62 (48%), Gaps = 3/62 (4%)
Query: 274 WTQEGSQVLM---FPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRAFL 330
W +E SQ + + +G + ++ TL I + D+G F+C A + GS V L
Sbjct: 246 WKRENSQTKLQEKYNSWHHGDFNYERQATLTISSARVNDSGVFMCYANNTFGSANVTTTL 305
Query: 331 QV 332
+V
Sbjct: 306 EV 307
>pdb|2UVE|A Chain A, Structure Of Yersinia Enterocolitica Family 28
Exopolygalacturonase
pdb|2UVE|B Chain B, Structure Of Yersinia Enterocolitica Family 28
Exopolygalacturonase
pdb|2UVF|A Chain A, Structure Of Yersinia Enterocolitica Family 28
Exopolygalacturonase In Complex With Digalaturonic Acid
pdb|2UVF|B Chain B, Structure Of Yersinia Enterocolitica Family 28
Exopolygalacturonase In Complex With Digalaturonic Acid
Length = 608
Score = 33.9 bits (76), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 35/75 (46%), Gaps = 7/75 (9%)
Query: 431 GEPEPRGGGVAPVIGYTVEYFSSDLQTGWVVAAHRITSTSITVSDLKPDTSYMFIVRAEN 490
G+ +P Y ++ +D H+I + TV LKP+TSY F V+A+
Sbjct: 79 GKASDNNDNFSPAKPYIDHFYVNDKDN----FQHKIVMQNFTVIGLKPETSYQFTVKAQY 134
Query: 491 SHG-LGIPSPVSPIT 504
+ G L + S PIT
Sbjct: 135 ADGSLSVAS--KPIT 147
>pdb|3O4L|E Chain E, Genetic And Structural Basis For Selection Of A Ubiquitous
T Cell Receptor Deployed In Epstein-Barr Virus
Length = 245
Score = 33.5 bits (75), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 44/210 (20%), Positives = 72/210 (34%), Gaps = 44/210 (20%)
Query: 78 PSDATVLSGSVVEFVCRVGGDPLPTILWRR-------------DDGKMPTGRAKILDDR- 123
PS SG+ V+ CR T+ W R ++G T + D+
Sbjct: 8 PSWVICKSGTSVKIECRSLDFQATTMFWYRQFPKQSLMLMATSNEGSKATYEQGVEKDKF 67
Query: 124 ----------SLQIENVGPQDEGLYICDVENLVGSISLRASLTVHLLRDDFRA------- 166
+L + + P+D YIC + G+ S T + +D
Sbjct: 68 LINHASLTLSTLTVTSAHPEDSSFYICSARDGTGNGYTFGSGTRLTVVEDLNKVFPPEVA 127
Query: 167 --EPKDTRVASGETALLECGPPKGQPEPT-LHWKKNGQFID---------LESSKSLDLS 214
EP + ++ + A L C P+ L W NG+ + L+ +L+ S
Sbjct: 128 VFEPSEAEISHTQKATLVCLATGFYPDHVELSWWVNGKEVHSGVCTDPQPLKEQPALNDS 187
Query: 215 RRTLGW-LRVRPLYWNVARPRANLNPRYIG 243
R L LRV +W R ++ G
Sbjct: 188 RYALSSRLRVSATFWQDPRNHFRCQVQFYG 217
>pdb|1X5K|A Chain A, The Solution Structure Of The Sixth Fibronectin Type Iii
Domain Of Human Neogenin
Length = 124
Score = 33.5 bits (75), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 45/97 (46%), Gaps = 16/97 (16%)
Query: 408 LFPGPPAAPVILNTTRG---SVTLGWGEPEPRGGGVAPVIGYTVEYFSSDLQT---GWV- 460
L P P V + + G ++ + W P G + GY + Y+S+D+ WV
Sbjct: 16 LVPTSPPKDVTVVSKEGKPKTIIVNWQPPSEANGKIT---GYII-YYSTDVNAEIHDWVI 71
Query: 461 --VAAHRITSTSITVSDLKPDTSYMFIVRAENSHGLG 495
V +R+T + +L DT Y F ++A NS G+G
Sbjct: 72 EPVVGNRLTHQ---IQELTLDTPYYFKIQARNSKGMG 105
>pdb|3FFD|B Chain B, Structure Of Parathyroid Hormone-Related Protein Complexed
To A Neutralizing Monoclonal Antibody
Length = 220
Score = 33.5 bits (75), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 17/25 (68%)
Query: 122 DRSLQIENVGPQDEGLYICDVENLV 146
DR L I N+ P+DE +YIC V + +
Sbjct: 74 DRYLSISNIQPEDEAMYICGVGDTI 98
>pdb|2LQR|A Chain A, Nmr Structure Of Ig3 Domain Of Palladin
Length = 108
Score = 33.5 bits (75), Expect = 0.36, Method: Composition-based stats.
Identities = 27/91 (29%), Positives = 38/91 (41%), Gaps = 8/91 (8%)
Query: 83 VLSGSVVEFVCRVGGDPLPTILWRRDDGKMPTGRA------KILDDR-SLQIENVGPQDE 135
+ G V F CRV G+P P I W + DGK + ++ + LD SL D+
Sbjct: 19 IFEGMPVTFTCRVAGNPKPKIYWFK-DGKQISPKSDHYTIQRDLDGTCSLHTTASTLDDD 77
Query: 136 GLYICDVENLVGSISLRASLTVHLLRDDFRA 166
G Y N G +S L V + R+
Sbjct: 78 GNYTIMAANPQGRVSCTGRLMVQAVNQRGRS 108
>pdb|2QHR|L Chain L, Crystal Structure Of The 13f6-1-2 Fab Fragment Bound To
Its Ebola Virus Glycoprotein Peptide Epitope
Length = 218
Score = 33.5 bits (75), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 17/25 (68%)
Query: 122 DRSLQIENVGPQDEGLYICDVENLV 146
DR L I N+ P+DE +YIC V + +
Sbjct: 74 DRYLSISNIQPEDEAIYICGVGDTI 98
>pdb|2C5D|C Chain C, Structure Of A Minimal Gas6-Axl Complex
pdb|2C5D|D Chain D, Structure Of A Minimal Gas6-Axl Complex
Length = 195
Score = 33.5 bits (75), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 48/197 (24%), Positives = 74/197 (37%), Gaps = 49/197 (24%)
Query: 164 FRAEPKDTRVASGETALLECG-PPKGQPEPTLHWKKNGQFIDLESSKSLDL---SRRTLG 219
F P + A G T L C +G+P P +HW ++GQ ++L S +
Sbjct: 5 FVGNPGNITGARGLTGTLRCQLQVQGEP-PEVHWLRDGQILELADSTQTQVPLGEDEQDD 63
Query: 220 W-----LRVRPLYWNVARPRANL----------NPRYIG-------------RKMASLLI 251
W LR+ L + L P Y+G R +A+
Sbjct: 64 WIVVSQLRITSLQLSDTGQYQCLVFLGHQTFVSQPGYVGLEGLPYFLEEPEDRTVAANTP 123
Query: 252 WNHPRVNRLSCFAEGSPLP-SVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDA 310
+N LSC A+G P P + W Q+ + PG+ + +L + G+ K +
Sbjct: 124 FN------LSCQAQGPPEPVDLLWLQDAVPLATAPGHG-------PQRSLHVPGLNKTSS 170
Query: 311 GFFVCSALSVAGSTTVR 327
F C A + G TT R
Sbjct: 171 --FSCEAHNAKGVTTSR 185
Score = 30.0 bits (66), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 39/88 (44%), Gaps = 5/88 (5%)
Query: 72 PFPISEPSDATVLSGSVVEFVCRVGGDPLPT-ILWRRDDGKMPTGRAKILDDRSLQIENV 130
P+ + EP D TV + + C+ G P P +LW +D + T RSL +
Sbjct: 107 PYFLEEPEDRTVAANTPFNLSCQAQGPPEPVDLLWLQDAVPLATAPGHG-PQRSLHVP-- 163
Query: 131 GPQDEGLYICDVENLVGSISLR-ASLTV 157
G + C+ N G + R A++TV
Sbjct: 164 GLNKTSSFSCEAHNAKGVTTSRTATITV 191
>pdb|2DM2|A Chain A, Solution Structure Of The First Ig Domain Of Human
Palladin
Length = 110
Score = 33.5 bits (75), Expect = 0.38, Method: Composition-based stats.
Identities = 27/83 (32%), Positives = 35/83 (42%), Gaps = 8/83 (9%)
Query: 83 VLSGSVVEFVCRVGGDPLPTILWRRDDGKMPTGRA------KILDDR-SLQIENVGPQDE 135
+ G V F CRV G+P P I W + DGK + ++ + LD SL D+
Sbjct: 20 IFEGMPVTFTCRVAGNPKPKIYWFK-DGKQISPKSDHYTIQRDLDGTCSLHTTASTLDDD 78
Query: 136 GLYICDVENLVGSISLRASLTVH 158
G Y N G IS L V
Sbjct: 79 GNYTIMAANPQGRISCTGRLMVQ 101
>pdb|3S96|B Chain B, Crystal Structure Of 3b5h10
pdb|3S96|D Chain D, Crystal Structure Of 3b5h10
Length = 218
Score = 33.5 bits (75), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 17/25 (68%)
Query: 122 DRSLQIENVGPQDEGLYICDVENLV 146
DR L I N+ P+DE +YIC V + +
Sbjct: 74 DRYLSISNIQPEDEAIYICGVGDTI 98
>pdb|3MTR|A Chain A, Crystal Structure Of The Ig5-Fn1 Tandem Of Human Ncam
pdb|3MTR|B Chain B, Crystal Structure Of The Ig5-Fn1 Tandem Of Human Ncam
Length = 215
Score = 33.5 bits (75), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 29/73 (39%), Gaps = 6/73 (8%)
Query: 86 GSVVEFVCRVGGDPLPTILWRRDDGKMPT---GRAKILDDRSLQIENVGPQDE---GLYI 139
G+ V C V P TI W RD +P+ KI + S V P E G Y
Sbjct: 33 GNQVNITCEVFAYPSATISWFRDGQLLPSSNYSNIKIYNTPSASYLEVTPDSENDFGNYN 92
Query: 140 CDVENLVGSISLR 152
C N +G SL
Sbjct: 93 CTAVNRIGQESLE 105
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 37/86 (43%), Gaps = 3/86 (3%)
Query: 413 PAAPVILNTTRGSVTLGWGEPEPRGGGVAPVIGYTVEYFSSDLQ---TGWVVAAHRITST 469
P++P I S T EP G P++ Y E+ + + + W A
Sbjct: 114 PSSPSIDQVEPYSSTAQVQFDEPEATGGVPILKYKAEWRAVGEEVWHSKWYDAKEASMEG 173
Query: 470 SITVSDLKPDTSYMFIVRAENSHGLG 495
+T+ LKP+T+Y + A N GLG
Sbjct: 174 IVTIVGLKPETTYAVRLAALNGKGLG 199
>pdb|2VKX|A Chain A, Human Ncam, Fn3 Domains 1 And 2, M610r Mutant
pdb|2VKX|B Chain B, Human Ncam, Fn3 Domains 1 And 2, M610r Mutant
pdb|2VKX|C Chain C, Human Ncam, Fn3 Domains 1 And 2, M610r Mutant
pdb|2VKX|D Chain D, Human Ncam, Fn3 Domains 1 And 2, M610r Mutant
pdb|2VKX|E Chain E, Human Ncam, Fn3 Domains 1 And 2, M610r Mutant
pdb|2VKX|F Chain F, Human Ncam, Fn3 Domains 1 And 2, M610r Mutant
Length = 209
Score = 33.5 bits (75), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 39/92 (42%), Gaps = 3/92 (3%)
Query: 413 PAAPVILNTTRGSVTLGWGEPEPRGGGVAPVIGYTVEYFSSDLQ---TGWVVAAHRITST 469
P++P I S T EP G P++ Y E+ + + + W A
Sbjct: 9 PSSPSIDQVEPYSSTAQVQFDEPEATGGVPILKYKAEWRAVGEEVWHSKWYDAKEASMEG 68
Query: 470 SITVSDLKPDTSYMFIVRAENSHGLGIPSPVS 501
+T+ LKP+T+Y + A N GLG S S
Sbjct: 69 IVTIVGLKPETTYAVRLAALNGKGLGEISAAS 100
>pdb|2VKW|A Chain A, Human Ncam, Fn3 Domains 1 And 2
pdb|2VKW|B Chain B, Human Ncam, Fn3 Domains 1 And 2
Length = 209
Score = 33.1 bits (74), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 39/92 (42%), Gaps = 3/92 (3%)
Query: 413 PAAPVILNTTRGSVTLGWGEPEPRGGGVAPVIGYTVEYFSSDLQ---TGWVVAAHRITST 469
P++P I S T EP G P++ Y E+ + + + W A
Sbjct: 9 PSSPSIDQVEPYSSTAQVQFDEPEATGGVPILKYKAEWRAVGEEVWHSKWYDAKEASMEG 68
Query: 470 SITVSDLKPDTSYMFIVRAENSHGLGIPSPVS 501
+T+ LKP+T+Y + A N GLG S S
Sbjct: 69 IVTIVGLKPETTYAVRLAALNGKGLGEISAAS 100
>pdb|2DOC|A Chain A, Solution Structure Of The Fibronectin Type-Iii Domain Of
Human Neural Cell Adhesion Molecule 2
Length = 119
Score = 33.1 bits (74), Expect = 0.48, Method: Composition-based stats.
Identities = 21/86 (24%), Positives = 42/86 (48%), Gaps = 3/86 (3%)
Query: 410 PGPPAAPVILNTTRGSVTLGWGEPEPRGGGVAPVIGYTVEYFSSDLQTGWVVAAHRITST 469
P P I+ ++ + + + +P+ GG P+ Y V+ + +V +H + T
Sbjct: 18 PSSPYGVKIIELSQTTAKVSFNKPDSHGG--VPIHHYQVDVKEVASEIWKIVRSHGV-QT 74
Query: 470 SITVSDLKPDTSYMFIVRAENSHGLG 495
+ +++L+P+T+Y V A N G G
Sbjct: 75 MVVLNNLEPNTTYEIRVAAVNGKGQG 100
>pdb|4HWU|A Chain A, Crystal Structure Of The Ig-C2 Type 1 Domain From Mouse
Fibroblast Growth Factor Receptor 2 (Fgfr2)
[nysgrc-005912]
pdb|4HWU|B Chain B, Crystal Structure Of The Ig-C2 Type 1 Domain From Mouse
Fibroblast Growth Factor Receptor 2 (Fgfr2)
[nysgrc-005912]
Length = 95
Score = 33.1 bits (74), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 29/73 (39%), Gaps = 2/73 (2%)
Query: 76 SEPSDATVLSGSVVEFVCRVGGDPLPTILWRRDDGKMPTGRAKILDDRSLQIENVGPQDE 135
S+P V G +E C + I W +D + +L LQI+ P+D
Sbjct: 6 SQPEAYVVAPGESLELQCML--KDAAVISWTKDGVHLGPNNRTVLIGEYLQIKGATPRDS 63
Query: 136 GLYICDVENLVGS 148
GLY C V S
Sbjct: 64 GLYACTAARTVDS 76
>pdb|3MFG|B Chain B, Crystal Structure Of Toxic Shock Syndrome Toxin 1 (Tsst-1)
In Complex With The Human T Cell Receptor Beta Chain
Vbeta2.1 (Ep-8)
Length = 118
Score = 33.1 bits (74), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 20/27 (74%)
Query: 299 TLRIQGVQKEDAGFFVCSALSVAGSTT 325
TL + ED+GF++CSAL+ +GS+T
Sbjct: 78 TLTVTSAHPEDSGFYICSALAGSGSST 104
>pdb|1RHF|A Chain A, Crystal Structure Of Human Tyro3-D1d2
pdb|1RHF|B Chain B, Crystal Structure Of Human Tyro3-D1d2
Length = 182
Score = 33.1 bits (74), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 38/125 (30%), Positives = 49/125 (39%), Gaps = 15/125 (12%)
Query: 75 ISEPSDATVLSGSVVEFVCRVGGDPLPTILWRRDDG--------KMPTGRAKILDDRSLQ 126
+ P TV G V+ C V G P I W +D +P + SL+
Sbjct: 6 MGAPVKLTVSQGQPVKLNCSVEGXEEPDIQWVKDGAVVQNLDQLYIPVSEQHWIGFLSLK 65
Query: 127 IENVGPQDEGLYICDVENLVGS-ISLRASLTVHLLRDDFRAEPKDTRVASGETALLEC-- 183
+V D G Y C VE+ + IS LTV + F EPKD V L C
Sbjct: 66 --SVERSDAGRYWCQVEDGGETEISQPVWLTVEGV-PFFTVEPKDLAVPPNAPFQLSCEA 122
Query: 184 -GPPK 187
GPP+
Sbjct: 123 VGPPE 127
Score = 30.8 bits (68), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 37/91 (40%), Gaps = 11/91 (12%)
Query: 72 PFPISEPSDATVLSGSVVEFVCRVGGDPLP-TILWRRDDGKM--PTGRAKILDDRSLQIE 128
PF EP D V + + C G P P TI+W R K+ P +L+
Sbjct: 99 PFFTVEPKDLAVPPNAPFQLSCEAVGPPEPVTIVWWRGTTKIGGPAPSPSVLN------- 151
Query: 129 NVGPQDEGLYICDVENLVGSISLRASLTVHL 159
G + C+ NL G S R + TVHL
Sbjct: 152 VTGVTQSTXFSCEAHNLKGLASSRTA-TVHL 181
>pdb|1IE5|A Chain A, Nmr Structure Of The Third Immunoglobulin Domain From The
Neural Cell Adhesion Molecule
Length = 107
Score = 32.7 bits (73), Expect = 0.56, Method: Composition-based stats.
Identities = 21/73 (28%), Positives = 34/73 (46%), Gaps = 1/73 (1%)
Query: 260 LSCFAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALS 319
L+C A+G P P++ WT++G + N + L I+ V K D ++C A +
Sbjct: 33 LACDADGFPEPTMTWTKDGEPIEQ-EDNEEKYSFNYDGSELIIKKVDKSDEAEYICIAEN 91
Query: 320 VAGSTTVRAFLQV 332
AG L+V
Sbjct: 92 KAGEQDATIHLKV 104
Score = 32.7 bits (73), Expect = 0.62, Method: Composition-based stats.
Identities = 25/85 (29%), Positives = 32/85 (37%), Gaps = 9/85 (10%)
Query: 80 DATVLSGSVVEFVCRVGGDPLPTILWRRDDGKMPTGRAKI-----LDDRSLQIENVGPQD 134
+AT V C G P PT+ W +D + + D L I+ V D
Sbjct: 22 NATANLSQSVTLACDADGFPEPTMTWTKDGEPIEQEDNEEKYSFNYDGSELIIKKVDKSD 81
Query: 135 EGLYICDVENLVGSISLRASLTVHL 159
E YIC EN G T+HL
Sbjct: 82 EAEYICIAENKAG----EQDATIHL 102
>pdb|4DCQ|A Chain A, Crystal Structure Of The Fab Fragment Of 3b5h10, An
Antibody-Specific For Extended Polyglutamine Repeats
(Orthorhombic Form)
Length = 218
Score = 32.7 bits (73), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 17/25 (68%)
Query: 122 DRSLQIENVGPQDEGLYICDVENLV 146
DR L I N+ P+DE +YIC V + +
Sbjct: 73 DRYLLISNIQPEDEAIYICGVGDTI 97
>pdb|1DR9|A Chain A, Crystal Structure Of A Soluble Form Of B7-1 (Cd80)
Length = 201
Score = 32.7 bits (73), Expect = 0.66, Method: Composition-based stats.
Identities = 24/86 (27%), Positives = 36/86 (41%), Gaps = 3/86 (3%)
Query: 119 ILDDRSLQIENVGPQDEGLYICDVENLVGSISLR---ASLTVHLLRDDFRAEPKDTRVAS 175
I ++ S+ I + P DEG Y C V R A +T+ + D D + +
Sbjct: 61 ITNNLSIVILALRPSDEGTYECVVLKYEKDAFKREHLAEVTLSVKADFPTPSISDFEIPT 120
Query: 176 GETALLECGPPKGQPEPTLHWKKNGQ 201
+ C G PEP L W +NG+
Sbjct: 121 SNIRRIICSTSGGFPEPHLSWLENGE 146
>pdb|1I8L|A Chain A, Human B7-1CTLA-4 Co-Stimulatory Complex
pdb|1I8L|B Chain B, Human B7-1CTLA-4 Co-Stimulatory Complex
Length = 208
Score = 32.7 bits (73), Expect = 0.70, Method: Composition-based stats.
Identities = 24/86 (27%), Positives = 36/86 (41%), Gaps = 3/86 (3%)
Query: 119 ILDDRSLQIENVGPQDEGLYICDVENLVGSISLR---ASLTVHLLRDDFRAEPKDTRVAS 175
I ++ S+ I + P DEG Y C V R A +T+ + D D + +
Sbjct: 61 ITNNLSIVILALRPSDEGTYECVVLKYEKDAFKREHLAEVTLSVKADFPTPSISDFEIPT 120
Query: 176 GETALLECGPPKGQPEPTLHWKKNGQ 201
+ C G PEP L W +NG+
Sbjct: 121 SNIRRIICSTSGGFPEPHLSWLENGE 146
>pdb|2E3V|A Chain A, Crystal Structure Of The First Fibronectin Type Iii Domain
Of Neural Cell Adhesion Molecule Splicing Isoform From
Human Muscle Culture Lambda-4.4
pdb|2E3V|B Chain B, Crystal Structure Of The First Fibronectin Type Iii Domain
Of Neural Cell Adhesion Molecule Splicing Isoform From
Human Muscle Culture Lambda-4.4
pdb|2E3V|C Chain C, Crystal Structure Of The First Fibronectin Type Iii Domain
Of Neural Cell Adhesion Molecule Splicing Isoform From
Human Muscle Culture Lambda-4.4
Length = 122
Score = 32.3 bits (72), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 32/67 (47%), Gaps = 5/67 (7%)
Query: 432 EPEPRGGGVAPVIGYTVEYFSSDLQ---TGWVVAAHRITSTSITVSDLKPDTSYMFIVRA 488
EPE GG P++ Y E+ + + + W A +T+ LKP+T+Y + A
Sbjct: 29 EPEATGG--VPILKYKAEWRAVGEEVWHSKWYDAKEASXEGIVTIVGLKPETTYAVRLAA 86
Query: 489 ENSHGLG 495
N GLG
Sbjct: 87 LNGKGLG 93
>pdb|4F9L|A Chain A, Crystal Structure Of The Human Btn3a1 Ectodomain In
Complex With The 20.1 Single Chain Antibody
pdb|4F9L|B Chain B, Crystal Structure Of The Human Btn3a1 Ectodomain In
Complex With The 20.1 Single Chain Antibody
pdb|4F9P|A Chain A, Crystal Structure Of The Human Btn3a1 Ectodomain In
Complex With The 103.2 Single Chain Antibody
pdb|4F9P|B Chain B, Crystal Structure Of The Human Btn3a1 Ectodomain In
Complex With The 103.2 Single Chain Antibody
Length = 220
Score = 32.3 bits (72), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 37/93 (39%), Gaps = 13/93 (13%)
Query: 115 GRAKILDD------RSLQIENVGPQDEGLYICDVENLVGSISLRA--SLTVHLLRDDFRA 166
GR IL D +L+I NV D G Y+C ++ G +A L V L D
Sbjct: 69 GRTSILRDGITAGKAALRIHNVTASDSGKYLCYFQD--GDFYEKALVELKVAALGSDLHV 126
Query: 167 EPKDTRVASGETALLECGPPKGQPEPTLHWKKN 199
+ K + LEC P+P + W N
Sbjct: 127 DVKGYKDGG---IHLECRSTGWYPQPQIQWSNN 156
>pdb|4F80|A Chain A, Crystal Structure Of The Human Btn3a1 Ectodomain
Length = 226
Score = 32.3 bits (72), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 37/93 (39%), Gaps = 13/93 (13%)
Query: 115 GRAKILDD------RSLQIENVGPQDEGLYICDVENLVGSISLRA--SLTVHLLRDDFRA 166
GR IL D +L+I NV D G Y+C ++ G +A L V L D
Sbjct: 69 GRTSILRDGITAGKAALRIHNVTASDSGKYLCYFQD--GDFYEKALVELKVAALGSDLHV 126
Query: 167 EPKDTRVASGETALLECGPPKGQPEPTLHWKKN 199
+ K + LEC P+P + W N
Sbjct: 127 DVKGYKDGG---IHLECRSTGWYPQPQIQWSNN 156
>pdb|2WV3|A Chain A, Neuroplastin-55 Binds To And Signals Through The
Fibroblast Growth Factor Receptor
Length = 190
Score = 32.3 bits (72), Expect = 0.76, Method: Composition-based stats.
Identities = 31/118 (26%), Positives = 50/118 (42%), Gaps = 12/118 (10%)
Query: 226 LYWNVARPRANLN------PRYIGRKMASLLIWNHPRVNRLSCFAEGSPLPSVFWTQEGS 279
+Y V+ P+AN P G K + N + + C + G P P W ++ +
Sbjct: 74 VYHFVSAPKANATIEVKAAPDITGHKRSENK--NEGQDAMMYCKSVGYPHPEWMWRKKEN 131
Query: 280 QVLMFPGNAYGHLHVTQEGT---LRIQGVQ-KEDAGFFVCSALSVAGSTTVRAFLQVR 333
V N+ G + + L I +Q ED G + C+A + GS +V L+VR
Sbjct: 132 GVFEEISNSSGRFFIINKENYTELNIVNLQITEDPGEYECNATNSIGSASVSTVLRVR 189
Score = 30.4 bits (67), Expect = 2.8, Method: Composition-based stats.
Identities = 22/77 (28%), Positives = 37/77 (48%), Gaps = 10/77 (12%)
Query: 93 CRVGGDPLPTILWRRDDGKM------PTGRAKILDDRS---LQIENVG-PQDEGLYICDV 142
C+ G P P +WR+ + + +GR I++ + L I N+ +D G Y C+
Sbjct: 114 CKSVGYPHPEWMWRKKENGVFEEISNSSGRFFIINKENYTELNIVNLQITEDPGEYECNA 173
Query: 143 ENLVGSISLRASLTVHL 159
N +GS S+ L V +
Sbjct: 174 TNSIGSASVSTVLRVRV 190
>pdb|1CFB|A Chain A, Crystal Structure Of Tandem Type Iii Fibronectin Domains
From Drosophila Neuroglian At 2.0 Angstroms
Length = 205
Score = 32.3 bits (72), Expect = 0.80, Method: Composition-based stats.
Identities = 20/66 (30%), Positives = 33/66 (50%), Gaps = 1/66 (1%)
Query: 434 EPRGGGVAPVIGYTVEYFSSDLQTGWVVAAHRITST-SITVSDLKPDTSYMFIVRAENSH 492
E +G +P++ YT+++ +S W A ++ +T S V + P +Y F V A N
Sbjct: 26 EQQGDNRSPILHYTIQFNTSFTPASWDAAYEKVPNTDSSFVVQMSPWANYTFRVIAFNKI 85
Query: 493 GLGIPS 498
G PS
Sbjct: 86 GASPPS 91
>pdb|1X5F|A Chain A, The Solution Structure Of The First Fibronectin Type Iii
Domain Of Human Neogenin
Length = 120
Score = 32.3 bits (72), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 36/78 (46%), Gaps = 18/78 (23%)
Query: 426 VTLGWGEP--EPRGGGVAPVIGYTVEYFSSDLQTGWVVAAHRITSTS------ITVSDLK 477
+ L W P +P G + + YT E +A R+ +TS +T+ +L
Sbjct: 34 IKLTWRTPASDPHGDNLTYSVFYTKEG----------IARERVENTSHPGEMQVTIQNLM 83
Query: 478 PDTSYMFIVRAENSHGLG 495
P T Y+F V A+N HG G
Sbjct: 84 PATVYIFRVMAQNKHGSG 101
>pdb|3NCM|A Chain A, Neural Cell Adhesion Molecule, Module 2, Nmr, 20
Structures
Length = 92
Score = 32.3 bits (72), Expect = 0.83, Method: Composition-based stats.
Identities = 21/67 (31%), Positives = 28/67 (41%), Gaps = 3/67 (4%)
Query: 78 PSDATVLSGSVVEFVCRVGGDPLPTILWR---RDDGKMPTGRAKILDDRSLQIENVGPQD 134
P+ G VC V PTI+W+ RD R +L + LQI + D
Sbjct: 8 PTPQEFKEGEDAVIVCDVVSSLPPTIIWKHKGRDVILKKDVRFIVLSNNYLQIRGIKKTD 67
Query: 135 EGLYICD 141
EG Y C+
Sbjct: 68 EGTYRCE 74
>pdb|2EDY|A Chain A, Solution Structures Of The Fn3 Domain Of Human Receptor-
Type Tyrosine-Protein Phosphatase F
Length = 103
Score = 32.3 bits (72), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 38/83 (45%), Gaps = 11/83 (13%)
Query: 422 TRGSVTLGWGEP--EPRGGGVAPVIGYTVEYFSSDLQTGWVVAAHRITSTSITVSDLKPD 479
T + L W P R G + I YTV + + Q + T T T++ LKPD
Sbjct: 21 TTSTTELAWDPPVLAERNGRI---ISYTVVFRDINSQQE---LQNITTDTRFTLTGLKPD 74
Query: 480 TSYMFIVRAENSHGLGIPSPVSP 502
T+Y VRA S G G P+SP
Sbjct: 75 TTYDIKVRAWTSKGSG---PLSP 94
>pdb|2OTU|A Chain A, Crystal Structure Of Fv Polyglutamine Complex
pdb|2OTU|C Chain C, Crystal Structure Of Fv Polyglutamine Complex
pdb|2OTU|E Chain E, Crystal Structure Of Fv Polyglutamine Complex
pdb|2OTU|G Chain G, Crystal Structure Of Fv Polyglutamine Complex
pdb|2OTW|A Chain A, Crystal Structure Of Fv Polyglutamine Complex
pdb|2OTW|C Chain C, Crystal Structure Of Fv Polyglutamine Complex
Length = 115
Score = 32.0 bits (71), Expect = 0.94, Method: Composition-based stats.
Identities = 12/25 (48%), Positives = 17/25 (68%)
Query: 122 DRSLQIENVGPQDEGLYICDVENLV 146
DR L I N+ P+DE +YIC V + +
Sbjct: 75 DRYLSISNIQPEDEAIYICGVGDTI 99
>pdb|2GSG|A Chain A, Crystal Structure Of The Fv Fragment Of A Monoclonal
Antibody Specific For Poly-Glutamine
pdb|2GSG|C Chain C, Crystal Structure Of The Fv Fragment Of A Monoclonal
Antibody Specific For Poly-Glutamine
Length = 116
Score = 32.0 bits (71), Expect = 0.97, Method: Composition-based stats.
Identities = 12/25 (48%), Positives = 17/25 (68%)
Query: 122 DRSLQIENVGPQDEGLYICDVENLV 146
DR L I N+ P+DE +YIC V + +
Sbjct: 74 DRYLSISNIQPEDEAIYICGVGDTI 98
>pdb|3QXT|A Chain A, Structure Of An Anti-Methotrexate Cdr1-3 Graft Vhh
Antibody In Complex With Methotrexate
pdb|3QXT|B Chain B, Structure Of An Anti-Methotrexate Cdr1-3 Graft Vhh
Antibody In Complex With Methotrexate
pdb|3QXU|A Chain A, Free Structure Of An Anti-Methotrexate Cdr1-3 Graft Vhh
Antibody
pdb|3QXU|B Chain B, Free Structure Of An Anti-Methotrexate Cdr1-3 Graft Vhh
Antibody
pdb|3QXU|C Chain C, Free Structure Of An Anti-Methotrexate Cdr1-3 Graft Vhh
Antibody
pdb|3QXU|D Chain D, Free Structure Of An Anti-Methotrexate Cdr1-3 Graft Vhh
Antibody
Length = 126
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 18/68 (26%), Positives = 32/68 (47%)
Query: 86 GSVVEFVCRVGGDPLPTILWRRDDGKMPTGRAKILDDRSLQIENVGPQDEGLYICDVENL 145
G EFV ++ GD T G+ R K + LQ++++ P+D +Y C ++
Sbjct: 44 GKEREFVAKISGDGRLTTYGDSVKGRFTISRDKGKNTVYLQMDSLKPEDTAVYYCAADDN 103
Query: 146 VGSISLRA 153
+ S R+
Sbjct: 104 YVTASWRS 111
>pdb|2HAZ|A Chain A, Crystal Structure Of The First Fibronectin Domain Of Human
Ncam1
Length = 105
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 32/67 (47%), Gaps = 5/67 (7%)
Query: 432 EPEPRGGGVAPVIGYTVEYFSSDLQ---TGWVVAAHRITSTSITVSDLKPDTSYMFIVRA 488
EPE GG P++ Y E+ + + + W A +T+ LKP+T+Y + A
Sbjct: 28 EPEATGG--VPILKYKAEWRAVGEEVWHSKWYDAKEASMEGIVTIVGLKPETTYAVRLAA 85
Query: 489 ENSHGLG 495
N GLG
Sbjct: 86 LNGKGLG 92
>pdb|4I0K|A Chain A, Crystal Structure Of Murine B7-H3 Extracellular Domain
Length = 222
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 30/107 (28%), Positives = 44/107 (41%), Gaps = 11/107 (10%)
Query: 107 RDDGKMPTGRAKILDD------RSLQIENVGPQDEGLYICDVE-NLVGSISLRASLTVHL 159
RD G + R + D SL+++ V DEG Y C V S ++ +
Sbjct: 50 RDQGSAYSNRTALFPDLLVQGNASLRLQRVRVTDEGSYTCFVSIQDFDSAAVSLQVAAPY 109
Query: 160 LRDDFRAEP-KDTRVASGETALLECGPPKGQPEPTLHWKKNGQFIDL 205
+ EP KD R G + C +G PE + W K+GQ + L
Sbjct: 110 SKPSMTLEPNKDLR--PGNMVTITCSSYQGYPEAEVFW-KDGQGVPL 153
>pdb|2R15|A Chain A, Crystal Structure Of The Myomesin Domains 12 And 13
pdb|2R15|B Chain B, Crystal Structure Of The Myomesin Domains 12 And 13
Length = 212
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 23/92 (25%), Positives = 35/92 (38%), Gaps = 15/92 (16%)
Query: 78 PSDATVLSGSVVEFVCRVGGDPLPTILWRRDDG----------KMPTGRAKILDDRSLQI 127
P T+ G + C V GDP P + W +++ K GR I
Sbjct: 124 PDVVTIQEGKALNLTCNVWGDPPPEVSWLKNEKALAQTDHCNLKFEAGRTAY-----FTI 178
Query: 128 ENVGPQDEGLYICDVENLVGSISLRASLTVHL 159
V D G Y V+N GS + +++V +
Sbjct: 179 NGVSTADSGKYGLVVKNKYGSETSDFTVSVFI 210
>pdb|1X5G|A Chain A, The Solution Structure Of The Second Fibronectin Type Iii
Domain Of Human Neogenin
Length = 116
Score = 31.2 bits (69), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 40/91 (43%), Gaps = 6/91 (6%)
Query: 409 FPGPPAAPVILNTTRGSVTLGWGEPEPRGGGVAPVIGYTVEYFSSDLQTGWVVAAHRITS 468
PGP + S+T+ W P G + Y +E +D + V++H
Sbjct: 17 LPGPAPNLRAYAASPTSITVTWETPVSGNGEIQNYKLYYME-KGTDKEQDVDVSSH---- 71
Query: 469 TSITVSDLKPDTSYMFIVRAENSHGLGIPSP 499
S T++ LK T Y F V A N HG G+ +P
Sbjct: 72 -SYTINGLKKYTEYSFRVVAYNKHGPGVSTP 101
>pdb|2IC2|A Chain A, Crystal Structure Of The First Fniii Domain Of Ihog
pdb|2IC2|B Chain B, Crystal Structure Of The First Fniii Domain Of Ihog
Length = 115
Score = 31.2 bits (69), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 25/94 (26%), Positives = 39/94 (41%), Gaps = 15/94 (15%)
Query: 412 PPAAPVILNTTRGSVTLGWGEPEPRGGGVAPVIGYTVEYFSSDLQTGWVVAAHRI----- 466
PP P + + SV L W P R G+ P++ + V+Y + W I
Sbjct: 5 PPTPPNVTRLSDESVXLRWXVP--RNDGL-PIVIFKVQYRXVGKRKNWQTTNDNIPYGKP 61
Query: 467 -------TSTSITVSDLKPDTSYMFIVRAENSHG 493
S + +V+DLKP +Y F + A S+
Sbjct: 62 KWNSELGKSFTASVTDLKPQHTYRFRILAVYSNN 95
>pdb|4FOM|A Chain A, Crystal Structure Of Human Nectin-3 Full Ectodomain
(D1-D3)
Length = 308
Score = 31.2 bits (69), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 23/93 (24%), Positives = 43/93 (46%), Gaps = 4/93 (4%)
Query: 120 LDDRSLQIENVGPQDEGLYICDVENL-VGSISLRASLTVHLLRDDFRAEPKDTRVASG-E 177
L+D ++ + N+G D G YIC +G+ ++TV + + D+ + G E
Sbjct: 71 LNDATITLHNIGFSDSGKYICKAVTFPLGNAQSSTTVTVLVEPTVSLIKGPDSLIDGGNE 130
Query: 178 TALLECGPPKGQPEPTLHWKKNGQFIDLESSKS 210
T C G+P + W+ G ++ES+ +
Sbjct: 131 TVAAICIAATGKPVAHIDWE--GDLGEMESTTT 161
>pdb|2XY2|A Chain A, Crystal Structure Of Ncam2 Ig1-2
Length = 189
Score = 31.2 bits (69), Expect = 1.9, Method: Composition-based stats.
Identities = 21/59 (35%), Positives = 31/59 (52%), Gaps = 3/59 (5%)
Query: 86 GSVVEFVCRVGGDPLPTILWRRDDGKMPT---GRAKILDDRSLQIENVGPQDEGLYICD 141
G E VCRV P P + W + ++ T R +L + +LQI N+ DEG+Y C+
Sbjct: 111 GEDAEVVCRVSSSPAPAVSWLYHNEEVTTISDNRFAMLANNNLQILNINKSDEGIYRCE 169
>pdb|1KTK|E Chain E, Complex Of Streptococcal Pyrogenic Enterotoxin C (Spec)
With A Human T Cell Receptor Beta Chain (Vbeta2.1)
pdb|1KTK|F Chain F, Complex Of Streptococcal Pyrogenic Enterotoxin C (Spec)
With A Human T Cell Receptor Beta Chain (Vbeta2.1)
Length = 247
Score = 31.2 bits (69), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 19/28 (67%)
Query: 298 GTLRIQGVQKEDAGFFVCSALSVAGSTT 325
TL + ED+ F++CSAL+ +GS+T
Sbjct: 77 STLTVTSAHPEDSSFYICSALAGSGSST 104
>pdb|3V6B|R Chain R, Vegfr-2VEGF-E Complex Structure
Length = 424
Score = 31.2 bits (69), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 30/97 (30%), Positives = 44/97 (45%), Gaps = 19/97 (19%)
Query: 124 SLQIENVGPQDEGLYICDVENLVGSISLRASLTVHLLRDDFRAEPKDTRVASGETALLEC 183
+L I+ V D+GLY C + G ++ + S V + F A SG +L+E
Sbjct: 161 TLTIDGVTRSDQGLYTCAASS--GLMTKKNSTFVRVHEKPFVA------FGSGMESLVEA 212
Query: 184 G-------PPK--GQPEPTLHWKKNGQFIDLESSKSL 211
P K G P P + W KNG I LES+ ++
Sbjct: 213 TVGERVRIPAKYLGYPPPEIKWYKNG--IPLESNHTI 247
>pdb|2O26|X Chain X, Structure Of A Class Iii Rtk Signaling Assembly
pdb|2O26|Y Chain Y, Structure Of A Class Iii Rtk Signaling Assembly
pdb|2O26|U Chain U, Structure Of A Class Iii Rtk Signaling Assembly
pdb|2O26|W Chain W, Structure Of A Class Iii Rtk Signaling Assembly
Length = 290
Score = 31.2 bits (69), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 24/45 (53%)
Query: 290 GHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVRE 334
G + ++ TL I + +D+G F+C A + GS V L+V E
Sbjct: 244 GDFNYERQETLTISSARVDDSGVFMCYANNTFGSANVTTTLKVVE 288
>pdb|3TNN|L Chain L, Crystal Structure Of N5-I5 Fab, An Adcc Mediating And
Non-Neutralizing Cd4i Anti-Hiv- 1 Antibody.
pdb|3TNN|B Chain B, Crystal Structure Of N5-I5 Fab, An Adcc Mediating And
Non-Neutralizing Cd4i Anti-Hiv- 1 Antibody.
pdb|3TNN|D Chain D, Crystal Structure Of N5-I5 Fab, An Adcc Mediating And
Non-Neutralizing Cd4i Anti-Hiv- 1 Antibody.
pdb|3TNN|F Chain F, Crystal Structure Of N5-I5 Fab, An Adcc Mediating And
Non-Neutralizing Cd4i Anti-Hiv- 1 Antibody
Length = 217
Score = 30.8 bits (68), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 19/31 (61%), Gaps = 2/31 (6%)
Query: 299 TLRIQGVQKEDAGFFVCSALSVAGSTTVRAF 329
+L I G+Q ED + CS S AGSTT R F
Sbjct: 74 SLTISGLQAEDEADYYCS--SYAGSTTFRVF 102
>pdb|2CPC|A Chain A, Solution Structure Of Rsgi Ruh-030, An Ig Like Domain From
Human Cdna
Length = 113
Score = 30.8 bits (68), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 32/62 (51%), Gaps = 8/62 (12%)
Query: 268 PLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLR---IQGVQKEDAGFFVCSALSVAGST 324
P V WT++G +V+ P L + +E T+R + VQ ED+G ++C + S
Sbjct: 40 PWAEVRWTKDGEEVVESPA-----LLLQKEDTVRRLVLPAVQLEDSGEYLCEIDDESASF 94
Query: 325 TV 326
TV
Sbjct: 95 TV 96
>pdb|2CR3|A Chain A, Solution Structure Of The First Ig-Like Domain Of Human
Fibroblast Growth Factor Receptor 1
Length = 99
Score = 30.8 bits (68), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 18/72 (25%), Positives = 35/72 (48%), Gaps = 1/72 (1%)
Query: 86 GSVVEFVCRVGGDPLPTILWRRDDGKMPTGRAKILDDRSLQIENVGPQDEGLYICDVENL 145
G +++ CR+ D + +I W RD ++ + +++++ P D GLY C +
Sbjct: 18 GDLLQLRCRLR-DDVQSINWLRDGVQLAESNRTRITGEEVEVQDSVPADSGLYACVTSSP 76
Query: 146 VGSISLRASLTV 157
GS + S+ V
Sbjct: 77 SGSDTTYFSVNV 88
>pdb|2Y25|A Chain A, Crystal Structure Of The Myomesin Domains My11-My13
pdb|2Y25|B Chain B, Crystal Structure Of The Myomesin Domains My11-My13
pdb|2Y25|C Chain C, Crystal Structure Of The Myomesin Domains My11-My13
pdb|2Y25|D Chain D, Crystal Structure Of The Myomesin Domains My11-My13
Length = 317
Score = 30.8 bits (68), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 23/92 (25%), Positives = 35/92 (38%), Gaps = 15/92 (16%)
Query: 78 PSDATVLSGSVVEFVCRVGGDPLPTILWRRDDG----------KMPTGRAKILDDRSLQI 127
P T+ G + C V GDP P + W +++ K GR I
Sbjct: 229 PDVVTIQEGKALNLTCNVWGDPPPEVSWLKNEKALASDDHCNLKFEAGRTAY-----FTI 283
Query: 128 ENVGPQDEGLYICDVENLVGSISLRASLTVHL 159
V D G Y V+N GS + +++V +
Sbjct: 284 NGVSTADSGKYGLVVKNKYGSETSDFTVSVFI 315
>pdb|2KDG|A Chain A, Solution Structure Of The 1st Ig Domain Of Myotilin
Length = 100
Score = 30.8 bits (68), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 42/96 (43%), Gaps = 7/96 (7%)
Query: 239 PRYIGRKMASLLIWNHPRVNRLSCFAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEG 298
PR+I ++ + + R R+ G P P V W G V + + V+++G
Sbjct: 6 PRFI--QVPENMSIDEGRFCRMDFKVSGLPAPDVSWYLNGRTV---QSDDLHKMIVSEKG 60
Query: 299 --TLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQV 332
+L + V+ DAG + C A + AG T L V
Sbjct: 61 LHSLIFEVVRASDAGAYACVAKNRAGEATFTVQLDV 96
>pdb|1UEY|A Chain A, Solution Structure Of The First Fibronectin Type Iii
Domain Of Human Kiaa0343 Protein
Length = 127
Score = 30.4 bits (67), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 39/93 (41%), Gaps = 4/93 (4%)
Query: 410 PGPPAAPVILNTTRGSVTLGWGEPEPRGGGVAPVIGYTVEYFSSDLQTGWVVAAHRITST 469
P PP + + SV L W P +P+ + +EY + + G ++ T
Sbjct: 17 PNPPFDLELTDQLDKSVQLSW---TPGDDNNSPITKFIIEYEDAMHKPGLWHHQTEVSGT 73
Query: 470 SITVS-DLKPDTSYMFIVRAENSHGLGIPSPVS 501
T +L P +Y F V A NS G +PS S
Sbjct: 74 QTTAQLNLSPYVNYSFRVMAVNSIGKSLPSEAS 106
>pdb|2IBG|A Chain A, Crystal Structure Of Hedgehog Bound To The Fniii Domains
Of Ihog
pdb|2IBG|B Chain B, Crystal Structure Of Hedgehog Bound To The Fniii Domains
Of Ihog
pdb|2IBG|C Chain C, Crystal Structure Of Hedgehog Bound To The Fniii Domains
Of Ihog
pdb|2IBG|D Chain D, Crystal Structure Of Hedgehog Bound To The Fniii Domains
Of Ihog
Length = 214
Score = 30.4 bits (67), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 25/94 (26%), Positives = 39/94 (41%), Gaps = 15/94 (15%)
Query: 412 PPAAPVILNTTRGSVTLGWGEPEPRGGGVAPVIGYTVEYFSSDLQTGWVVAAHRI----- 466
PP P + + SV L W P R G+ P++ + V+Y + W I
Sbjct: 4 PPTPPNVTRLSDESVMLRWMVP--RNDGL-PIVIFKVQYRMVGKRKNWQTTNDNIPYGKP 60
Query: 467 -------TSTSITVSDLKPDTSYMFIVRAENSHG 493
S + +V+DLKP +Y F + A S+
Sbjct: 61 KWNSELGKSFTASVTDLKPQHTYRFRILAVYSNN 94
>pdb|1WK0|A Chain A, Solution Structure Of Fibronectin Type Iii Domain Derived
From Human Kiaa0970 Protein
Length = 137
Score = 30.4 bits (67), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 39/89 (43%), Gaps = 7/89 (7%)
Query: 416 PVILNTTRGSVTLGWGEP------EPRGGGVAPVIGYTVEYFSSDLQTGWVVAAHRITST 469
PV + +V L W P E V + GY V SS + G + + T
Sbjct: 24 PVASDIQARTVVLTWSPPSSLINGETDESSVPELYGYEV-LISSTGKDGKYKSVYVGEET 82
Query: 470 SITVSDLKPDTSYMFIVRAENSHGLGIPS 498
+IT++DLKP Y V+AE + G PS
Sbjct: 83 NITLNDLKPAMDYHAKVQAEYNSIKGTPS 111
>pdb|2IBB|A Chain A, Crystal Structure Of The First And Second Fniii Domains Of
Ihog
Length = 213
Score = 30.4 bits (67), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 25/94 (26%), Positives = 39/94 (41%), Gaps = 15/94 (15%)
Query: 412 PPAAPVILNTTRGSVTLGWGEPEPRGGGVAPVIGYTVEYFSSDLQTGWVVAAHRI----- 466
PP P + + SV L W P R G+ P++ + V+Y + W I
Sbjct: 4 PPTPPNVTRLSDESVMLRWMVP--RNDGL-PIVIFKVQYRMVGKRKNWQTTNDNIPYGKP 60
Query: 467 -------TSTSITVSDLKPDTSYMFIVRAENSHG 493
S + +V+DLKP +Y F + A S+
Sbjct: 61 KWNSELGKSFTASVTDLKPQHTYRFRILAVYSNN 94
>pdb|3QIB|C Chain C, Crystal Structure Of The 2b4 Tcr In Complex With MccI-Ek
pdb|3QJF|A Chain A, Crystal Structure Of The 2b4 Tcr
pdb|3QJF|C Chain C, Crystal Structure Of The 2b4 Tcr
Length = 207
Score = 30.4 bits (67), Expect = 3.3, Method: Composition-based stats.
Identities = 15/41 (36%), Positives = 20/41 (48%)
Query: 299 TLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVREFCVLP 339
TL I+ Q ED+G + C+AL G F Q V+P
Sbjct: 73 TLHIRDAQLEDSGTYFCAALRATGGNNKLTFGQGTVLSVIP 113
>pdb|1X5X|A Chain A, Solution Structure Of The Fibronectin Type-Iii Domain Of
Human Fibronectin Type Iii Domain Containing Protein 3
Length = 109
Score = 30.4 bits (67), Expect = 3.5, Method: Composition-based stats.
Identities = 28/103 (27%), Positives = 42/103 (40%), Gaps = 25/103 (24%)
Query: 413 PAAPVILNTTRGSVTLGWGEPE--PRGGGVAPVI---------GYTVEYFSSDLQTGWVV 461
PA+PV+ ++L W +P P G++ ++ G+ +Y DL
Sbjct: 11 PASPVLTKAGITWLSLQWSKPSGTPSDEGISYILEMEEETSGYGFKPKYDGEDL------ 64
Query: 462 AAHRITSTSITVSDLKPDTSYMFIVRAENSHGLGIPSPVSPIT 504
+ TV +L+ T Y F V A NS G PS V T
Sbjct: 65 --------AYTVKNLRRSTKYKFKVIAYNSEGKSNPSEVVEFT 99
>pdb|4EXP|X Chain X, Structure Of Mouse Interleukin-34 In Complex With Mouse
Fms
Length = 283
Score = 30.0 bits (66), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 21/79 (26%), Positives = 32/79 (40%), Gaps = 7/79 (8%)
Query: 77 EPSDATVLSGSVVEFVCRVGGDPLP-TILWRRDDGKMPTGRAKILDD------RSLQIEN 129
EPS + G + VC + ++ +R D K+ D R+L +
Sbjct: 192 EPSKLVRIRGEAAQIVCSATNAEVGFNVILKRGDTKLEIPLNSDFQDNYYKKVRALSLNA 251
Query: 130 VGPQDEGLYICDVENLVGS 148
V QD G+Y C N VG+
Sbjct: 252 VDFQDAGIYSCVASNDVGT 270
>pdb|2DJS|A Chain A, Solution Structures Of The Fn3 Domain Of Human Ephrin
Type- B Receptor 1
Length = 108
Score = 30.0 bits (66), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 19/77 (24%), Positives = 35/77 (45%), Gaps = 4/77 (5%)
Query: 419 LNTTRGSVTLGWGEPEPRGGGVAPVIGYTVEYFSSDLQTGWVVAAHRITSTSITVSDLKP 478
++ T S+TL W +PE G ++ Y + Y+ + + + R + + + L+P
Sbjct: 17 VSATMRSITLSWPQPEQPNG---IILDYEIRYYEKE-HNEFNSSMARSQTNTARIDGLRP 72
Query: 479 DTSYMFIVRAENSHGLG 495
Y+ VRA G G
Sbjct: 73 GMVYVVQVRARTVAGYG 89
>pdb|3EJJ|X Chain X, Structure Of M-Csf Bound To The First Three Domains Of Fms
Length = 289
Score = 30.0 bits (66), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 21/79 (26%), Positives = 32/79 (40%), Gaps = 7/79 (8%)
Query: 77 EPSDATVLSGSVVEFVCRVGGDPLP-TILWRRDDGKMPTGRAKILDD------RSLQIEN 129
EPS + G + VC + ++ +R D K+ D R+L +
Sbjct: 192 EPSKLVRIRGEAAQIVCSATNAEVGFNVILKRGDTKLEIPLNSDFQDNYYKKVRALSLNA 251
Query: 130 VGPQDEGLYICDVENLVGS 148
V QD G+Y C N VG+
Sbjct: 252 VDFQDAGIYSCVASNDVGT 270
>pdb|1GXE|A Chain A, Central Domain Of Cardiac Myosin Binding Protein C
Length = 139
Score = 29.6 bits (65), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 28/116 (24%), Positives = 49/116 (42%), Gaps = 35/116 (30%)
Query: 78 PSDATVLSGSVVEFVCRVGGDPLPTILWRRD---------------------------DG 110
P V++G+ + + GDP PT++W++ D
Sbjct: 25 PDTIVVVAGNKLRLDVPISGDPAPTVIWQKAITQGNKAPARPAPDAPEDTGDSDEWVFDK 84
Query: 111 KM---PTGRAKI--LDDRSL-QIENVGPQDEGLYICDVENLVGSISLRASLTVHLL 160
K+ GR ++ DRS+ +E +DEG+Y V+N VG + +LTV ++
Sbjct: 85 KLLCETEGRVRVETTKDRSIFTVEGAEKEDEGVYTVTVKNPVGEDQV--NLTVKVI 138
>pdb|3QQN|A Chain A, The Retinal Specific Cd147 Ig0 Domain: From Molecular
Structure To Biological Activity
pdb|3QQN|B Chain B, The Retinal Specific Cd147 Ig0 Domain: From Molecular
Structure To Biological Activity
Length = 137
Score = 29.6 bits (65), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 30/69 (43%), Gaps = 11/69 (15%)
Query: 260 LSCFAEGSPLPSVFWTQEG-------SQVLMFPGNAYGHLHVTQE----GTLRIQGVQKE 308
L C A GSP+P + W EG SQ+ H+H T T+ I + +E
Sbjct: 41 LHCEAVGSPVPEIQWWFEGQGPNDIXSQLWDGARLDRVHIHATYHQHAASTISIDTLVEE 100
Query: 309 DAGFFVCSA 317
D G + C A
Sbjct: 101 DTGTYECRA 109
>pdb|2EDE|A Chain A, Solution Structure Of The Sixth Fibronectin Type Iii
Domain Of Human Netrin Receptor Dcc
Length = 114
Score = 29.6 bits (65), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 35/73 (47%), Gaps = 5/73 (6%)
Query: 425 SVTLGWGEP-EPRGGGVAPVIGYTVEY-FSSDLQTGWVVAAHRITSTSITVSDLKPDTSY 482
+V + W P E G A ++ YT++ D ++ R+T + DL DT Y
Sbjct: 26 AVIVSWQPPLEANGKITAYILFYTLDKNIPIDDWIMETISGDRLTHQ---IMDLNLDTMY 82
Query: 483 MFIVRAENSHGLG 495
F ++A NS G+G
Sbjct: 83 YFRIQARNSKGVG 95
>pdb|1WWC|A Chain A, Nt3 Binding Domain Of Human Trkc Receptor
Length = 118
Score = 29.6 bits (65), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 25/49 (51%), Gaps = 8/49 (16%)
Query: 187 KGQPEPTLHWKKNGQ------FIDLESSKSLDLSRRTLGWLRVRPLYWN 229
+G P PTLHW NGQ I +E + ++S L L +P ++N
Sbjct: 30 RGNPPPTLHWLHNGQPLRESKIIHVEYYQEGEISEGCL--LFNKPTHYN 76
>pdb|1MCO|H Chain H, Three-Dimensional Structure Of A Human Immunoglobulin With
A Hinge Deletion
Length = 428
Score = 29.6 bits (65), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 25/113 (22%), Positives = 45/113 (39%), Gaps = 15/113 (13%)
Query: 72 PFPISEPSDATVLSGSVVEFVCRVGGDPLPTILWRRDDGKMPTGRAKILDDRSLQIENVG 131
P + E V + C V GD + TIL+ + P G+ +E +G
Sbjct: 1 PLVLQESGPGLVKPSEALSLTCTVSGDSINTILYYWSWIRQPPGKG---------LEWIG 51
Query: 132 PQDEGLYICDVENLVGSISLRASLTVHLLRDDFRAEPKDTRVASGETALLECG 184
YI + G+ SL++ +T+ + + K + V + +TA+ C
Sbjct: 52 ------YIYYSGSTYGNPSLKSRVTISVNTSKNQFYSKLSSVTAADTAVYYCA 98
>pdb|2CKN|A Chain A, Nmr Structure Of The First Ig Module Of Mouse Fgfr1
Length = 95
Score = 29.6 bits (65), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 18/72 (25%), Positives = 34/72 (47%), Gaps = 1/72 (1%)
Query: 86 GSVVEFVCRVGGDPLPTILWRRDDGKMPTGRAKILDDRSLQIENVGPQDEGLYICDVENL 145
G +++ CR+ D + +I W RD ++ + +++ + P D GLY C +
Sbjct: 24 GDLLQLRCRLRDD-VQSINWLRDGVQLVESNRTRITGEEVEVRDSIPADSGLYACVTSSP 82
Query: 146 VGSISLRASLTV 157
GS + S+ V
Sbjct: 83 SGSDTTYFSVNV 94
>pdb|3QR2|A Chain A, Wild Type Cd147 Ig0 Domain
pdb|3QR2|B Chain B, Wild Type Cd147 Ig0 Domain
Length = 137
Score = 29.3 bits (64), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 30/69 (43%), Gaps = 11/69 (15%)
Query: 260 LSCFAEGSPLPSVFWTQEG-------SQVLMFPGNAYGHLHVTQE----GTLRIQGVQKE 308
L C A GSP+P + W EG SQ+ H+H T T+ I + +E
Sbjct: 41 LHCEAVGSPVPEIQWWFEGQGPNDICSQLWDGARLDRVHIHATYHQHAASTISIDTLVEE 100
Query: 309 DAGFFVCSA 317
D G + C A
Sbjct: 101 DTGTYECRA 109
>pdb|2YUW|A Chain A, Solution Structure Of 2nd Fibronectin Domain Of Slow Type
Myosin-Binding Protein C
Length = 110
Score = 29.3 bits (64), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 37/83 (44%), Gaps = 4/83 (4%)
Query: 420 NTTRGSVTLGWGEPEPRGGGVAPVIGYTVEYFSSDLQTGWVVAAHR-ITSTSITVSDLKP 478
+ T +VT+ W P+ G A + GY +EY + W+VA I T T++ L
Sbjct: 18 SVTDTTVTMRWRPPDHIGA--AGLDGYVLEYCFEGTE-DWIVANKDLIDKTKFTITGLPT 74
Query: 479 DTSYMFIVRAENSHGLGIPSPVS 501
D V+A N+ G P S
Sbjct: 75 DAKIFVRVKAVNAAGASEPKYYS 97
>pdb|2NPL|X Chain X, Nmr Structure Of Card D2 Domain
Length = 96
Score = 29.3 bits (64), Expect = 7.3, Method: Composition-based stats.
Identities = 15/46 (32%), Positives = 22/46 (47%), Gaps = 2/46 (4%)
Query: 105 WRR--DDGKMPTGRAKILDDRSLQIENVGPQDEGLYICDVENLVGS 148
W++ D KMPT + + ++N + G Y C V N VGS
Sbjct: 36 WQKLSDSQKMPTSWLAEMTSSVISVKNASSEYSGTYSCTVRNRVGS 81
>pdb|1Z9M|A Chain A, Crystal Structure Of Nectin-Like Molecule-1 Protein Domain
1
pdb|1Z9M|B Chain B, Crystal Structure Of Nectin-Like Molecule-1 Protein Domain
1
Length = 145
Score = 28.9 bits (63), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 26/99 (26%), Positives = 38/99 (38%), Gaps = 13/99 (13%)
Query: 57 SDDQWKLIAKEALIKPFPISEPSDATVLSGSVVEFVCRVGGDPLPTILWRR-DDGKMPTG 115
+DD K +A L + SD TV++G V C+V ++ W + G
Sbjct: 24 TDDDDKAMADINLSQDDSQPWTSDETVVAGGTVVLKCQVKDHEDSSLQWSNPAQQTLYFG 83
Query: 116 RAKILDDRSLQ------------IENVGPQDEGLYICDV 142
+ L D +Q I NV DEG Y C +
Sbjct: 84 EKRALRDNRIQLVTSTPHELSISISNVALADEGEYTCSI 122
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.136 0.418
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 19,018,689
Number of Sequences: 62578
Number of extensions: 811013
Number of successful extensions: 2976
Number of sequences better than 100.0: 203
Number of HSP's better than 100.0 without gapping: 122
Number of HSP's successfully gapped in prelim test: 81
Number of HSP's that attempted gapping in prelim test: 2265
Number of HSP's gapped (non-prelim): 551
length of query: 633
length of database: 14,973,337
effective HSP length: 105
effective length of query: 528
effective length of database: 8,402,647
effective search space: 4436597616
effective search space used: 4436597616
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (25.4 bits)