Query psy15127
Match_columns 633
No_of_seqs 267 out of 3169
Neff 10.6
Searched_HMMs 46136
Date Fri Aug 16 21:16:38 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy15127.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/15127hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3513|consensus 100.0 1.2E-66 2.7E-71 542.7 56.4 582 3-633 152-907 (1051)
2 KOG4221|consensus 100.0 3E-57 6.5E-62 468.7 43.1 530 40-633 88-704 (1381)
3 KOG3513|consensus 100.0 2.9E-50 6.2E-55 420.5 53.1 546 44-633 290-1008(1051)
4 KOG4221|consensus 100.0 2.7E-50 5.9E-55 417.2 44.1 549 29-632 174-804 (1381)
5 KOG4222|consensus 100.0 6.1E-50 1.3E-54 412.3 34.8 588 12-627 55-725 (1281)
6 KOG4222|consensus 100.0 6.9E-44 1.5E-48 367.8 28.6 579 10-632 154-836 (1281)
7 KOG4194|consensus 99.9 2.4E-25 5.3E-30 216.6 20.6 257 69-333 501-796 (873)
8 PHA02785 IL-beta-binding prote 99.9 1E-23 2.2E-28 206.8 26.4 239 81-324 36-318 (326)
9 KOG4194|consensus 99.9 1.5E-22 3.3E-27 197.3 15.6 188 47-236 573-785 (873)
10 PHA02785 IL-beta-binding prote 99.8 6E-19 1.3E-23 173.2 21.2 189 47-237 81-317 (326)
11 PHA02826 IL-1 receptor-like pr 99.8 2.6E-17 5.7E-22 151.0 19.6 120 78-204 29-176 (227)
12 KOG3515|consensus 99.7 5.6E-16 1.2E-20 160.0 23.5 321 4-333 24-396 (741)
13 cd05851 Ig3_Contactin-1 Third 99.7 4.5E-16 9.8E-21 121.1 12.0 88 71-158 1-88 (88)
14 KOG0196|consensus 99.7 7.6E-16 1.6E-20 156.1 16.3 184 410-633 332-528 (996)
15 cd05762 Ig8_MLCK Eighth immuno 99.6 2.2E-15 4.7E-20 119.6 11.8 89 72-160 1-93 (98)
16 cd04968 Ig3_Contactin_like Thi 99.6 2.2E-14 4.9E-19 112.2 12.4 88 71-158 1-88 (88)
17 PHA02826 IL-1 receptor-like pr 99.6 3.8E-14 8.2E-19 130.2 15.1 111 47-157 97-226 (227)
18 cd05728 Ig4_Contactin-2-like F 99.6 1.3E-14 2.8E-19 112.4 10.2 84 74-157 2-85 (85)
19 cd05745 Ig3_Peroxidasin Third 99.5 2.6E-14 5.6E-19 107.5 9.1 73 85-157 1-74 (74)
20 cd05852 Ig5_Contactin-1 Fifth 99.5 3E-14 6.4E-19 106.0 9.2 72 86-157 1-73 (73)
21 cd05747 Ig5_Titin_like M5, fif 99.5 6.3E-14 1.4E-18 110.5 11.1 86 70-155 2-91 (92)
22 cd04975 Ig4_SCFR_like Fourth i 99.5 7.2E-14 1.6E-18 110.9 11.2 80 79-158 11-100 (101)
23 cd05867 Ig4_L1-CAM_like Fourth 99.5 1.3E-13 2.8E-18 104.3 10.6 72 86-157 1-75 (76)
24 cd05852 Ig5_Contactin-1 Fifth 99.5 1.3E-13 2.9E-18 102.5 9.7 73 255-332 1-73 (73)
25 cd05737 Ig_Myomesin_like_C C-t 99.5 1.6E-13 3.4E-18 108.2 10.7 82 76-157 6-92 (92)
26 cd05762 Ig8_MLCK Eighth immuno 99.5 2.8E-13 6E-18 107.6 12.0 90 248-339 8-97 (98)
27 cd05892 Ig_Myotilin_C C-termin 99.5 1.1E-13 2.4E-18 103.2 9.1 69 89-157 1-75 (75)
28 PF07679 I-set: Immunoglobulin 99.5 1.6E-13 3.4E-18 108.3 10.4 86 72-157 1-90 (90)
29 cd05868 Ig4_NrCAM Fourth immun 99.5 1.7E-13 3.6E-18 103.4 9.7 73 86-158 1-76 (76)
30 cd05894 Ig_C5_MyBP-C C5 immuno 99.5 2.9E-13 6.3E-18 104.6 11.1 78 80-157 4-86 (86)
31 cd04973 Ig1_FGFR First immunog 99.5 2E-13 4.3E-18 103.9 9.9 79 78-157 1-79 (79)
32 cd05859 Ig4_PDGFR-alpha Fourth 99.5 3E-13 6.5E-18 107.6 11.0 79 80-158 12-100 (101)
33 cd05740 Ig_CEACAM_D4 Fourth im 99.5 3.2E-13 6.9E-18 105.4 10.9 86 71-157 1-90 (91)
34 cd05863 Ig2_VEGFR-3 Second imm 99.5 1.8E-13 3.9E-18 99.0 8.8 66 89-158 1-66 (67)
35 cd05869 Ig5_NCAM-1 Fifth immun 99.5 3.2E-13 7E-18 107.6 11.1 87 71-157 2-97 (97)
36 cd05730 Ig3_NCAM-1_like Third 99.5 3.8E-13 8.2E-18 107.0 11.3 89 71-159 1-94 (95)
37 cd05850 Ig1_Contactin-2 First 99.5 5.8E-13 1.3E-17 105.1 12.2 85 71-155 1-92 (94)
38 cd05745 Ig3_Peroxidasin Third 99.5 2.1E-13 4.4E-18 102.6 9.2 74 254-332 1-74 (74)
39 cd05865 Ig1_NCAM-1 First immun 99.5 5.1E-13 1.1E-17 105.1 11.6 83 75-157 4-95 (96)
40 cd04976 Ig2_VEGFR Second immun 99.5 2.6E-13 5.6E-18 100.7 9.3 70 89-158 1-70 (71)
41 cd04972 Ig_TrkABC_d4 Fourth do 99.5 3.5E-13 7.5E-18 105.8 10.5 84 74-157 3-90 (90)
42 cd05848 Ig1_Contactin-5 First 99.5 5.3E-13 1.2E-17 105.2 11.5 84 72-155 2-92 (94)
43 cd05725 Ig3_Robo Third immunog 99.5 2.2E-13 4.7E-18 101.0 8.7 69 89-157 1-69 (69)
44 cd05849 Ig1_Contactin-1 First 99.5 5.3E-13 1.2E-17 104.7 11.2 85 71-155 1-91 (93)
45 cd05870 Ig5_NCAM-2 Fifth immun 99.5 3.8E-13 8.2E-18 107.4 10.6 86 71-157 2-98 (98)
46 cd05893 Ig_Palladin_C C-termin 99.5 2.5E-13 5.4E-18 101.6 8.7 69 89-157 1-75 (75)
47 cd05723 Ig4_Neogenin Fourth im 99.5 4.3E-13 9.3E-18 99.8 9.9 70 88-157 1-71 (71)
48 cd07693 Ig1_Robo First immunog 99.5 5E-13 1.1E-17 107.9 11.1 87 71-157 1-99 (100)
49 cd04969 Ig5_Contactin_like Fif 99.5 4.7E-13 1E-17 100.4 9.5 72 86-157 1-73 (73)
50 cd04978 Ig4_L1-NrCAM_like Four 99.5 5.8E-13 1.2E-17 101.1 10.1 72 86-157 1-75 (76)
51 cd05739 Ig3_RPTP_IIa_LAR_like 99.5 6.6E-13 1.4E-17 97.6 9.9 68 86-155 1-68 (69)
52 cd05735 Ig8_DSCAM Eight immuno 99.4 6.6E-13 1.4E-17 103.2 10.0 75 86-160 1-84 (88)
53 cd05892 Ig_Myotilin_C C-termin 99.4 8.2E-13 1.8E-17 98.6 9.7 71 258-332 1-75 (75)
54 cd05722 Ig1_Neogenin First imm 99.4 8.9E-13 1.9E-17 104.7 10.5 84 74-157 2-95 (95)
55 cd05732 Ig5_NCAM-1_like Fifth 99.4 1.1E-12 2.5E-17 104.6 11.0 86 71-157 2-96 (96)
56 cd05893 Ig_Palladin_C C-termin 99.4 9.2E-13 2E-17 98.5 9.4 71 258-332 1-75 (75)
57 cd05723 Ig4_Neogenin Fourth im 99.4 1.2E-12 2.5E-17 97.4 9.9 71 257-332 1-71 (71)
58 cd05726 Ig4_Robo Fhird immunog 99.4 1E-12 2.3E-17 103.1 10.1 75 86-160 1-84 (90)
59 cd05867 Ig4_L1-CAM_like Fourth 99.4 2.1E-12 4.6E-17 97.6 11.3 75 255-332 1-75 (76)
60 cd05724 Ig2_Robo Second immuno 99.4 1.4E-12 3E-17 101.8 10.5 81 77-157 2-86 (86)
61 cd05876 Ig3_L1-CAM Third immun 99.4 9.3E-13 2E-17 98.0 9.0 70 89-158 1-71 (71)
62 cd05863 Ig2_VEGFR-3 Second imm 99.4 1.2E-12 2.5E-17 94.8 9.2 66 258-333 1-66 (67)
63 cd05864 Ig2_VEGFR-2 Second imm 99.4 9.1E-13 2E-17 96.7 8.7 68 89-157 1-68 (70)
64 cd05853 Ig6_Contactin-4 Sixth 99.4 9.3E-13 2E-17 100.1 9.0 74 87-160 1-84 (85)
65 cd05894 Ig_C5_MyBP-C C5 immuno 99.4 2.3E-12 5.1E-17 99.5 11.4 80 249-332 4-86 (86)
66 cd05854 Ig6_Contactin-2 Sixth 99.4 1.3E-12 2.8E-17 100.7 9.9 74 87-160 1-84 (85)
67 cd05857 Ig2_FGFR Second immuno 99.4 1.5E-12 3.3E-17 101.2 10.4 77 81-157 4-85 (85)
68 cd05868 Ig4_NrCAM Fourth immun 99.4 1.9E-12 4E-17 97.7 10.4 75 255-332 1-75 (76)
69 cd05749 Ig2_Tyro3_like Second 99.4 1.1E-12 2.3E-17 99.4 9.0 78 74-155 1-80 (81)
70 cd05735 Ig8_DSCAM Eight immuno 99.4 2E-12 4.3E-17 100.5 10.7 80 255-338 1-87 (88)
71 cd04969 Ig5_Contactin_like Fif 99.4 1.7E-12 3.6E-17 97.4 9.9 73 255-332 1-73 (73)
72 cd05744 Ig_Myotilin_C_like Imm 99.4 1.6E-12 3.4E-17 97.7 9.4 69 89-157 1-75 (75)
73 cd05746 Ig4_Peroxidasin Fourth 99.4 9.8E-13 2.1E-17 97.3 8.1 67 89-155 1-68 (69)
74 cd05773 Ig8_hNephrin_like Eigh 99.4 2.8E-12 6.2E-17 104.0 11.3 93 68-160 1-107 (109)
75 cd05738 Ig2_RPTP_IIa_LAR_like 99.4 1.4E-12 3.1E-17 97.8 8.7 70 89-158 1-74 (74)
76 cd05891 Ig_M-protein_C C-termi 99.4 3E-12 6.4E-17 100.6 10.8 82 76-157 6-92 (92)
77 cd04975 Ig4_SCFR_like Fourth i 99.4 3.3E-12 7.1E-17 101.4 10.7 82 248-333 11-100 (101)
78 cd05730 Ig3_NCAM-1_like Third 99.4 6.5E-12 1.4E-16 99.9 12.3 86 244-333 7-93 (95)
79 cd05866 Ig1_NCAM-2 First immun 99.4 3.2E-12 6.9E-17 99.5 10.3 82 75-157 4-91 (92)
80 cd05851 Ig3_Contactin-1 Third 99.4 3.1E-12 6.7E-17 99.5 10.2 79 249-333 10-88 (88)
81 cd05726 Ig4_Robo Fhird immunog 99.4 4.1E-12 8.9E-17 99.7 10.7 81 255-335 1-84 (90)
82 cd05748 Ig_Titin_like Immunogl 99.4 3.2E-12 6.9E-17 96.3 9.6 70 88-157 1-74 (74)
83 cd05746 Ig4_Peroxidasin Fourth 99.4 2.5E-12 5.4E-17 95.1 8.6 68 258-330 1-68 (69)
84 cd04970 Ig6_Contactin_like Six 99.4 2.7E-12 5.9E-17 99.5 9.1 74 87-160 1-84 (85)
85 cd05856 Ig2_FGFRL1-like Second 99.4 2.9E-12 6.3E-17 99.0 9.3 77 81-157 4-82 (82)
86 cd05760 Ig2_PTK7 Second immuno 99.4 4.1E-12 8.9E-17 96.1 9.7 69 89-157 1-74 (77)
87 cd05864 Ig2_VEGFR-2 Second imm 99.4 3.8E-12 8.2E-17 93.5 9.0 69 258-333 1-69 (70)
88 cd05737 Ig_Myomesin_like_C C-t 99.4 6.3E-12 1.4E-16 99.0 10.8 83 247-332 8-92 (92)
89 cd05855 Ig_TrkB_d5 Fifth domai 99.4 2.9E-12 6.4E-17 95.8 8.3 66 91-156 3-77 (79)
90 cd04978 Ig4_L1-NrCAM_like Four 99.4 5.8E-12 1.3E-16 95.6 10.2 75 255-332 1-75 (76)
91 cd05756 Ig1_IL1R_like First im 99.4 3E-12 6.6E-17 100.4 8.7 79 79-157 7-94 (94)
92 KOG3515|consensus 99.4 6.3E-11 1.4E-15 123.1 20.6 199 82-282 18-249 (741)
93 cd05731 Ig3_L1-CAM_like Third 99.4 3.4E-12 7.3E-17 95.4 8.4 69 89-157 1-70 (71)
94 cd05854 Ig6_Contactin-2 Sixth 99.4 9E-12 1.9E-16 96.0 10.7 79 256-334 1-83 (85)
95 cd07702 Ig2_VEGFR-1 Second imm 99.3 4.7E-12 1E-16 93.0 8.4 69 89-157 1-70 (72)
96 cd05876 Ig3_L1-CAM Third immun 99.3 5.3E-12 1.2E-16 93.9 8.8 70 258-332 1-70 (71)
97 cd05764 Ig_2 Subgroup of the i 99.3 6.7E-12 1.4E-16 94.5 9.4 72 86-157 1-74 (74)
98 cd04977 Ig1_NCAM-1_like First 99.3 1E-11 2.2E-16 97.5 10.6 83 74-157 3-92 (92)
99 cd05744 Ig_Myotilin_C_like Imm 99.3 8.8E-12 1.9E-16 93.6 9.7 71 258-332 1-75 (75)
100 cd04971 Ig_TrKABC_d5 Fifth dom 99.3 6.1E-12 1.3E-16 95.6 8.7 67 90-156 2-79 (81)
101 cd04972 Ig_TrkABC_d4 Fourth do 99.3 1.3E-11 2.8E-16 96.8 10.9 82 249-332 9-90 (90)
102 cd05752 Ig1_FcgammaR_like Frst 99.3 3.6E-12 7.7E-17 96.0 7.3 77 72-157 1-78 (78)
103 cd04976 Ig2_VEGFR Second immun 99.3 1.1E-11 2.4E-16 91.9 9.8 70 258-333 1-70 (71)
104 cd05743 Ig_Perlecan_D2_like Im 99.3 8.5E-12 1.8E-16 94.8 9.3 72 86-157 1-76 (78)
105 cd05758 Ig5_KIRREL3-like Fifth 99.3 1.4E-11 3E-16 98.4 10.8 84 71-155 2-97 (98)
106 cd05748 Ig_Titin_like Immunogl 99.3 1.2E-11 2.6E-16 93.1 9.9 71 257-332 1-74 (74)
107 cd05725 Ig3_Robo Third immunog 99.3 6.9E-12 1.5E-16 92.9 8.2 69 258-332 1-69 (69)
108 cd05763 Ig_1 Subgroup of the i 99.3 1.1E-11 2.3E-16 93.6 9.2 69 89-157 1-74 (75)
109 cd05869 Ig5_NCAM-1 Fifth immun 99.3 1.8E-11 3.9E-16 97.5 10.5 81 252-332 14-97 (97)
110 cd04968 Ig3_Contactin_like Thi 99.3 2.6E-11 5.7E-16 94.7 11.3 79 248-332 9-87 (88)
111 cd05859 Ig4_PDGFR-alpha Fourth 99.3 2.2E-11 4.8E-16 96.9 11.0 81 249-333 12-100 (101)
112 cd05853 Ig6_Contactin-4 Sixth 99.3 1.5E-11 3.2E-16 93.5 9.4 77 256-334 1-83 (85)
113 cd05738 Ig2_RPTP_IIa_LAR_like 99.3 1.8E-11 4E-16 91.8 9.7 72 258-332 1-73 (74)
114 cd05865 Ig1_NCAM-1 First immun 99.3 1.4E-11 3E-16 97.0 9.4 80 249-332 9-95 (96)
115 cd05870 Ig5_NCAM-2 Fifth immun 99.3 1.9E-11 4E-16 97.6 10.1 84 249-332 10-98 (98)
116 cd05728 Ig4_Contactin-2-like F 99.3 2.2E-11 4.8E-16 94.2 10.1 78 249-332 8-85 (85)
117 cd04974 Ig3_FGFR Third immunog 99.3 1E-11 2.2E-16 97.3 8.2 73 86-158 1-90 (90)
118 cd04967 Ig1_Contactin First Ig 99.3 3.3E-11 7.1E-16 94.8 10.9 79 72-150 2-86 (91)
119 cd05857 Ig2_FGFR Second immuno 99.3 2.7E-11 5.8E-16 94.1 10.3 81 250-332 4-85 (85)
120 cd04970 Ig6_Contactin_like Six 99.3 2.7E-11 5.8E-16 93.9 10.1 79 256-334 1-83 (85)
121 cd05739 Ig3_RPTP_IIa_LAR_like 99.3 3.2E-11 6.9E-16 88.7 9.9 68 255-330 1-68 (69)
122 cd05760 Ig2_PTK7 Second immuno 99.3 3.3E-11 7.2E-16 91.2 10.2 71 258-332 1-72 (77)
123 cd05747 Ig5_Titin_like M5, fif 99.3 5E-11 1.1E-15 93.9 11.4 78 248-330 11-91 (92)
124 cd05873 Ig_Sema4D_like Immunog 99.3 3.8E-11 8.2E-16 91.6 10.0 68 77-145 2-70 (87)
125 cd05765 Ig_3 Subgroup of the i 99.3 2.7E-11 5.8E-16 93.3 9.3 72 86-157 1-81 (81)
126 cd05763 Ig_1 Subgroup of the i 99.3 2.2E-11 4.8E-16 91.9 8.7 73 258-332 1-74 (75)
127 cd05765 Ig_3 Subgroup of the i 99.3 3.3E-11 7.1E-16 92.8 9.6 78 255-332 1-81 (81)
128 cd05731 Ig3_L1-CAM_like Third 99.3 2.8E-11 6E-16 90.4 8.9 70 258-332 1-70 (71)
129 cd05764 Ig_2 Subgroup of the i 99.3 3.9E-11 8.4E-16 90.3 9.6 73 255-332 1-74 (74)
130 cd05858 Ig3_FGFR-2 Third immun 99.3 2.3E-11 5E-16 95.3 8.6 72 86-157 1-89 (90)
131 cd05740 Ig_CEACAM_D4 Fourth im 99.3 5E-11 1.1E-15 93.1 10.4 78 248-332 11-90 (91)
132 PF07679 I-set: Immunoglobulin 99.3 1.1E-10 2.3E-15 92.0 12.3 83 248-332 8-90 (90)
133 cd05743 Ig_Perlecan_D2_like Im 99.3 4.3E-11 9.3E-16 90.9 9.6 73 255-332 1-76 (78)
134 cd05732 Ig5_NCAM-1_like Fifth 99.3 4.7E-11 1E-15 95.3 10.3 83 250-332 11-96 (96)
135 cd05734 Ig7_DSCAM Seventh immu 99.2 3E-11 6.5E-16 92.2 8.4 69 89-157 1-79 (79)
136 cd05855 Ig_TrkB_d5 Fifth domai 99.2 4.4E-11 9.5E-16 89.5 8.9 71 260-331 3-77 (79)
137 cd05754 Ig3_Perlecan_like Thir 99.2 5.9E-11 1.3E-15 92.0 9.8 80 74-155 4-84 (85)
138 cd05891 Ig_M-protein_C C-termi 99.2 1.2E-10 2.6E-15 91.4 11.6 83 247-332 8-92 (92)
139 cd05736 Ig2_Follistatin_like S 99.2 6.2E-11 1.3E-15 89.7 9.3 70 89-158 1-74 (76)
140 cd04974 Ig3_FGFR Third immunog 99.2 5E-11 1.1E-15 93.3 8.9 77 255-332 1-89 (90)
141 cd05866 Ig1_NCAM-2 First immun 99.2 1.4E-10 3E-15 90.3 11.0 79 248-332 8-91 (92)
142 cd04971 Ig_TrKABC_d5 Fifth dom 99.2 8.3E-11 1.8E-15 89.3 9.6 71 260-331 3-79 (81)
143 cd05856 Ig2_FGFRL1-like Second 99.2 6.1E-11 1.3E-15 91.6 9.1 79 250-332 4-82 (82)
144 cd05742 Ig1_VEGFR_like First i 99.2 7.2E-11 1.6E-15 91.2 9.3 72 86-157 1-83 (84)
145 cd05773 Ig8_hNephrin_like Eigh 99.2 1.4E-10 3.1E-15 94.0 11.3 81 254-335 22-107 (109)
146 cd05750 Ig_Pro_neuregulin Immu 99.2 4.1E-11 8.8E-16 90.7 7.6 66 89-154 1-74 (75)
147 cd05882 Ig1_Necl-1 First (N-te 99.2 9.5E-11 2.1E-15 91.9 9.9 79 78-157 4-95 (95)
148 cd05757 Ig2_IL1R_like Second i 99.2 6.4E-11 1.4E-15 92.2 8.7 77 80-156 4-85 (92)
149 cd04979 Ig_Semaphorin_C Immuno 99.2 1.1E-10 2.4E-15 91.4 10.0 82 77-159 2-88 (89)
150 cd05771 IgC_Tapasin_R Tapasin- 99.2 1.7E-10 3.7E-15 98.8 11.8 78 124-202 2-80 (139)
151 cd05858 Ig3_FGFR-2 Third immun 99.2 7.4E-11 1.6E-15 92.5 8.7 77 255-332 1-89 (90)
152 cd05848 Ig1_Contactin-5 First 99.2 1.9E-10 4.1E-15 90.7 10.8 69 254-326 18-87 (94)
153 PF00041 fn3: Fibronectin type 99.2 8.6E-11 1.9E-15 91.5 8.7 79 534-632 7-85 (85)
154 cd05724 Ig2_Robo Second immuno 99.2 1.5E-10 3.3E-15 90.2 9.9 80 248-331 4-85 (86)
155 cd05736 Ig2_Follistatin_like S 99.2 1.9E-10 4E-15 87.1 10.1 73 258-333 1-74 (76)
156 cd04973 Ig1_FGFR First immunog 99.2 1.2E-10 2.6E-15 88.5 9.0 76 250-332 4-79 (79)
157 cd05875 Ig6_hNeurofascin_like 99.2 1.2E-10 2.7E-15 87.7 8.9 66 89-154 1-75 (77)
158 cd05733 Ig6_L1-CAM_like Sixth 99.2 8.6E-11 1.9E-15 88.9 8.0 67 89-155 1-76 (77)
159 cd07702 Ig2_VEGFR-1 Second imm 99.2 1.4E-10 3E-15 85.2 8.7 70 258-332 1-70 (72)
160 cd05861 Ig1_PDGFR-alphabeta Fr 99.2 2.6E-10 5.6E-15 87.7 10.4 73 86-158 1-83 (84)
161 cd05874 Ig6_NrCAM Sixth immuno 99.2 1.5E-10 3.2E-15 87.3 8.9 67 89-155 1-76 (77)
162 cd05722 Ig1_Neogenin First imm 99.2 2E-10 4.4E-15 91.1 10.0 79 250-331 9-94 (95)
163 cd05734 Ig7_DSCAM Seventh immu 99.2 1.5E-10 3.2E-15 88.3 8.6 74 258-331 1-78 (79)
164 cd07693 Ig1_Robo First immunog 99.2 2.4E-10 5.3E-15 92.1 10.2 85 248-332 9-99 (100)
165 cd05756 Ig1_IL1R_like First im 99.2 1.6E-10 3.4E-15 90.7 8.2 82 249-332 8-94 (94)
166 cd05850 Ig1_Contactin-2 First 99.1 4.1E-10 8.9E-15 88.8 10.5 72 255-330 19-92 (94)
167 cd05753 Ig2_FcgammaR_like Seco 99.1 1.2E-10 2.5E-15 89.3 7.2 78 76-157 4-83 (83)
168 cd05733 Ig6_L1-CAM_like Sixth 99.1 1.8E-10 4E-15 87.1 8.0 66 258-326 1-71 (77)
169 cd05875 Ig6_hNeurofascin_like 99.1 3.8E-10 8.3E-15 85.1 9.7 67 258-327 1-72 (77)
170 cd07701 Ig1_Necl-3 First (N-te 99.1 3.5E-10 7.7E-15 89.1 9.9 79 78-157 4-95 (95)
171 cd05758 Ig5_KIRREL3-like Fifth 99.1 4.6E-10 1E-14 89.5 10.3 79 249-330 10-97 (98)
172 cd05849 Ig1_Contactin-1 First 99.1 5.8E-10 1.3E-14 87.5 10.0 71 255-330 19-91 (93)
173 cd05729 Ig2_FGFR_like Second i 99.1 6.6E-10 1.4E-14 86.4 10.1 77 81-157 4-85 (85)
174 cd05749 Ig2_Tyro3_like Second 99.1 5.4E-10 1.2E-14 84.7 9.1 69 248-326 6-75 (81)
175 cd05874 Ig6_NrCAM Sixth immuno 99.1 5.4E-10 1.2E-14 84.2 9.1 67 258-327 1-72 (77)
176 cd05898 Ig5_KIRREL3 Fifth immu 99.1 1.2E-09 2.6E-14 85.4 10.8 84 71-155 2-97 (98)
177 cd05895 Ig_Pro_neuregulin-1 Im 99.1 3.1E-10 6.7E-15 85.8 7.3 66 89-154 1-75 (76)
178 cd04977 Ig1_NCAM-1_like First 99.1 9.9E-10 2.2E-14 86.2 10.5 78 248-331 8-91 (92)
179 cd05750 Ig_Pro_neuregulin Immu 99.1 5.5E-10 1.2E-14 84.4 8.6 72 258-329 1-74 (75)
180 cd05742 Ig1_VEGFR_like First i 99.1 4.8E-10 1E-14 86.6 7.7 78 255-332 1-83 (84)
181 cd05727 Ig2_Contactin-2-like S 99.1 5.3E-10 1.1E-14 86.6 7.7 70 79-148 11-85 (96)
182 PF13895 Ig_2: Immunoglobulin 99.1 9.6E-10 2.1E-14 84.4 9.2 79 71-157 1-80 (80)
183 cd05771 IgC_Tapasin_R Tapasin- 99.1 1.7E-09 3.7E-14 92.6 11.4 99 48-146 1-131 (139)
184 PF00041 fn3: Fibronectin type 99.0 8.5E-10 1.8E-14 85.8 8.3 84 412-498 2-85 (85)
185 cd05871 Ig_Semaphorin_classIII 99.0 2.3E-09 5E-14 83.5 10.0 78 81-159 6-90 (91)
186 smart00408 IGc2 Immunoglobulin 99.0 1.6E-09 3.5E-14 78.6 8.4 63 85-147 1-63 (63)
187 cd05882 Ig1_Necl-1 First (N-te 99.0 3.7E-09 8.1E-14 82.9 10.3 82 248-330 5-93 (95)
188 cd05861 Ig1_PDGFR-alphabeta Fr 99.0 2E-09 4.4E-14 82.7 8.5 78 255-333 1-83 (84)
189 cd05895 Ig_Pro_neuregulin-1 Im 99.0 2.3E-09 4.9E-14 81.1 8.4 71 258-329 1-75 (76)
190 cd05845 Ig2_L1-CAM_like Second 99.0 1.8E-09 3.9E-14 83.4 7.3 70 78-147 10-83 (95)
191 cd05717 Ig1_Necl-1-3_like Firs 99.0 4.9E-09 1.1E-13 83.2 10.0 78 79-157 5-95 (95)
192 cd05754 Ig3_Perlecan_like Thir 99.0 3.6E-09 7.8E-14 82.0 8.4 75 248-330 9-84 (85)
193 cd05898 Ig5_KIRREL3 Fifth immu 98.9 7.9E-09 1.7E-13 80.8 10.0 81 247-330 8-97 (98)
194 cd04967 Ig1_Contactin First Ig 98.9 6.6E-09 1.4E-13 81.6 9.4 69 254-326 18-87 (91)
195 cd05729 Ig2_FGFR_like Second i 98.9 8.2E-09 1.8E-13 80.2 9.6 81 250-332 4-85 (85)
196 cd05897 Ig2_IL1R2_like Second 98.9 4.2E-09 9.2E-14 81.7 7.7 77 81-157 5-93 (95)
197 cd05862 Ig1_VEGFR First immuno 98.9 7.9E-09 1.7E-13 79.7 8.9 73 86-158 1-85 (86)
198 cd07701 Ig1_Necl-3 First (N-te 98.9 1.6E-08 3.5E-13 79.6 10.4 85 247-332 4-95 (95)
199 cd05873 Ig_Sema4D_like Immunog 98.9 1.6E-08 3.4E-13 77.3 9.7 68 248-321 4-71 (87)
200 cd05752 Ig1_FcgammaR_like Frst 98.9 4.1E-09 8.8E-14 79.3 6.4 60 248-320 8-68 (78)
201 cd05896 Ig1_IL1RAPL-1_like Fir 98.9 1.2E-08 2.6E-13 79.2 9.0 79 79-157 8-104 (104)
202 smart00410 IG_like Immunoglobu 98.9 3E-08 6.4E-13 77.0 11.5 80 78-157 1-85 (86)
203 smart00409 IG Immunoglobulin. 98.9 3E-08 6.4E-13 77.0 11.5 80 78-157 1-85 (86)
204 cd05757 Ig2_IL1R_like Second i 98.9 1.1E-08 2.5E-13 79.6 8.6 77 250-332 5-86 (92)
205 cd07690 Ig1_CD4 First immunogl 98.9 6.2E-09 1.3E-13 81.0 7.1 68 81-148 2-90 (94)
206 cd05872 Ig_Sema4B_like Immunog 98.8 1.6E-08 3.6E-13 76.5 8.5 78 79-157 4-82 (85)
207 PF00047 ig: Immunoglobulin do 98.8 7.7E-09 1.7E-13 75.2 6.5 57 86-142 1-64 (64)
208 cd04979 Ig_Semaphorin_C Immuno 98.8 3.2E-08 6.8E-13 77.4 10.1 83 248-333 4-87 (89)
209 cd05862 Ig1_VEGFR First immuno 98.8 2.9E-08 6.2E-13 76.6 8.6 79 255-333 1-85 (86)
210 KOG0196|consensus 98.8 2.9E-07 6.3E-12 94.9 17.1 137 356-509 397-537 (996)
211 cd05753 Ig2_FcgammaR_like Seco 98.8 2.2E-08 4.7E-13 76.7 6.9 64 251-324 10-74 (83)
212 cd05774 Ig_CEACAM_D1 First imm 98.8 5.9E-08 1.3E-12 77.3 9.5 81 76-156 3-104 (105)
213 smart00408 IGc2 Immunoglobulin 98.8 3.8E-08 8.3E-13 71.2 7.9 63 254-322 1-63 (63)
214 cd05885 Ig2_Necl-4 Second immu 98.8 4.3E-08 9.2E-13 73.1 7.9 60 89-148 2-68 (80)
215 cd05860 Ig4_SCFR Fourth immuno 98.7 1.1E-07 2.3E-12 73.7 10.1 80 79-158 11-100 (101)
216 cd05871 Ig_Semaphorin_classIII 98.7 8E-08 1.7E-12 74.8 9.4 83 249-334 5-90 (91)
217 cd05727 Ig2_Contactin-2-like S 98.7 2.9E-08 6.2E-13 76.9 6.4 74 249-324 12-86 (96)
218 cd05845 Ig2_L1-CAM_like Second 98.7 3.8E-08 8.2E-13 76.1 6.8 73 247-323 10-84 (95)
219 cd05717 Ig1_Necl-1-3_like Firs 98.7 1.6E-07 3.4E-12 74.5 10.2 84 247-331 4-94 (95)
220 cd05885 Ig2_Necl-4 Second immu 98.7 7.5E-08 1.6E-12 71.8 7.3 67 258-324 2-69 (80)
221 cd05751 Ig1_LILRB1_like First 98.7 7.5E-08 1.6E-12 75.4 7.5 73 71-145 2-75 (91)
222 cd05881 Ig1_Necl-2 First (N-te 98.6 3.5E-07 7.5E-12 71.2 10.3 67 79-145 5-84 (95)
223 PF13927 Ig_3: Immunoglobulin 98.6 5.2E-08 1.1E-12 73.5 4.3 72 71-144 1-75 (75)
224 PF13895 Ig_2: Immunoglobulin 98.6 5.6E-07 1.2E-11 68.8 9.7 71 250-332 9-80 (80)
225 cd05860 Ig4_SCFR Fourth immuno 98.6 7.4E-07 1.6E-11 69.1 10.1 85 248-333 11-100 (101)
226 PHA03376 BARF1; Provisional 98.6 5.5E-07 1.2E-11 76.3 9.8 112 80-201 20-163 (221)
227 cd05741 Ig_CEACAM_D1_like Firs 98.5 4E-07 8.7E-12 71.8 8.6 71 86-156 1-91 (92)
228 cd07690 Ig1_CD4 First immunogl 98.5 2.9E-07 6.2E-12 71.7 7.3 75 250-324 2-91 (94)
229 PF00047 ig: Immunoglobulin do 98.5 1.5E-07 3.3E-12 68.3 5.3 58 255-317 1-64 (64)
230 cd05897 Ig2_IL1R2_like Second 98.5 4E-07 8.6E-12 70.7 7.8 70 251-324 6-81 (95)
231 cd05774 Ig_CEACAM_D1 First imm 98.5 1.5E-06 3.2E-11 69.3 11.2 43 289-331 61-104 (105)
232 cd04983 IgV_TCR_alpha_like Imm 98.5 4.2E-07 9.1E-12 74.3 8.5 71 76-146 3-93 (109)
233 cd05759 Ig2_KIRREL3-like Secon 98.5 3.9E-07 8.5E-12 69.9 7.7 68 89-156 2-81 (82)
234 cd05896 Ig1_IL1RAPL-1_like Fir 98.5 6.9E-07 1.5E-11 69.4 8.3 83 249-332 9-104 (104)
235 cd05899 IgV_TCR_beta Immunoglo 98.5 6.1E-07 1.3E-11 73.3 8.5 70 75-145 2-94 (110)
236 cd05900 Ig_Aggrecan Immunoglob 98.5 1.1E-06 2.5E-11 70.9 9.9 75 85-159 1-110 (112)
237 cd05879 Ig_P0 Immunoglobulin ( 98.5 1E-06 2.3E-11 71.7 9.6 72 77-148 4-105 (116)
238 smart00410 IG_like Immunoglobu 98.5 2.2E-06 4.8E-11 66.2 11.0 78 250-332 4-85 (86)
239 smart00409 IG Immunoglobulin. 98.5 2.2E-06 4.8E-11 66.2 11.0 78 250-332 4-85 (86)
240 cd05714 Ig_CSPGs_LP Immunoglob 98.5 1.5E-06 3.3E-11 70.4 9.8 75 85-159 1-104 (106)
241 cd05877 Ig_LP_like Immunoglobu 98.4 1.7E-06 3.8E-11 70.1 10.0 75 85-159 1-104 (106)
242 KOG4802|consensus 98.4 2.3E-06 4.9E-11 81.2 11.8 176 419-630 155-341 (516)
243 cd05878 Ig_Aggrecan_like Immun 98.4 2.8E-06 6E-11 69.0 10.0 74 86-159 2-108 (110)
244 cd05713 Ig_MOG_like Immunoglob 98.4 3.5E-06 7.7E-11 67.5 9.7 72 86-157 1-99 (100)
245 cd05711 Ig_FcalphaRI Immunoglo 98.3 2.2E-06 4.7E-11 67.4 7.8 71 71-143 1-75 (94)
246 cd05718 Ig1_PVR_like First imm 98.3 3.8E-06 8.3E-11 67.0 9.3 71 87-157 1-97 (98)
247 cd05741 Ig_CEACAM_D1_like Firs 98.3 3.2E-06 6.9E-11 66.6 8.2 76 255-330 1-90 (92)
248 cd05759 Ig2_KIRREL3-like Secon 98.3 4E-06 8.7E-11 64.2 8.4 64 258-324 2-72 (82)
249 cd05775 Ig_SLAM-CD84_like_N N- 98.3 2.2E-06 4.8E-11 67.9 6.7 74 84-157 2-96 (97)
250 KOG4258|consensus 98.3 5.3E-06 1.1E-10 86.2 11.0 129 470-632 783-915 (1025)
251 cd05881 Ig1_Necl-2 First (N-te 98.3 1E-05 2.2E-10 63.0 10.2 73 248-320 5-84 (95)
252 cd04980 IgV_L_kappa Immunoglob 98.3 3.6E-06 7.8E-11 68.2 7.9 72 74-145 3-93 (106)
253 cd05880 Ig_EVA1 Immunoglobulin 98.3 4.4E-06 9.6E-11 68.5 8.3 71 77-147 4-103 (115)
254 cd05872 Ig_Sema4B_like Immunog 98.3 6.7E-06 1.4E-10 62.4 8.4 76 249-332 5-80 (85)
255 cd05886 Ig1_Nectin-1_like Firs 98.2 1.5E-05 3.3E-10 62.8 10.6 71 88-158 2-99 (99)
256 cd07694 Ig2_CD4 Second immunog 98.2 1.6E-05 3.4E-10 59.3 9.9 77 80-158 8-86 (88)
257 PF07686 V-set: Immunoglobulin 98.2 6.4E-06 1.4E-10 67.9 9.0 83 75-157 5-114 (114)
258 cd04982 IgV_TCR_gamma Immunogl 98.2 4.1E-06 8.9E-11 69.2 7.7 69 76-144 3-98 (116)
259 cd00099 IgV Immunoglobulin var 98.2 3.8E-06 8.3E-11 68.1 7.3 66 82-147 2-91 (105)
260 cd05714 Ig_CSPGs_LP Immunoglob 98.2 1.2E-05 2.5E-10 65.2 10.0 81 254-334 1-104 (106)
261 cd05715 Ig_P0-like Immunoglobu 98.2 1.3E-05 2.9E-10 66.0 10.1 71 77-147 4-104 (116)
262 cd05877 Ig_LP_like Immunoglobu 98.2 2E-05 4.3E-10 63.9 11.0 81 254-334 1-104 (106)
263 cd05902 Ig_Neurocan Immunoglob 98.2 8.5E-06 1.8E-10 65.5 8.4 74 86-159 2-108 (110)
264 cd05883 Ig2_Necl-2 Second immu 98.2 1.4E-05 2.9E-10 59.9 8.5 71 89-159 2-81 (82)
265 PHA02987 Ig domain OX-2-like p 98.2 1.3E-05 2.7E-10 68.9 9.3 81 80-160 24-124 (189)
266 cd05713 Ig_MOG_like Immunoglob 98.1 1.7E-05 3.7E-10 63.4 9.4 78 255-332 1-99 (100)
267 cd05888 Ig1_Nectin-4_like Frst 98.1 2.2E-05 4.7E-10 62.6 9.8 70 88-157 2-99 (100)
268 cd05846 Ig1_MRC-OX-2_like Firs 98.1 1.8E-05 4E-10 62.7 9.1 72 86-157 1-96 (97)
269 cd05887 Ig1_Nectin-3_like Firs 98.1 3.1E-05 6.6E-10 60.4 9.9 72 87-158 1-96 (96)
270 cd05900 Ig_Aggrecan Immunoglob 98.1 3.5E-05 7.5E-10 62.3 10.3 80 255-334 2-110 (112)
271 cd00063 FN3 Fibronectin type 3 98.1 1.2E-05 2.7E-10 62.9 7.8 79 534-632 8-86 (93)
272 cd05901 Ig_Versican Immunoglob 98.1 4E-05 8.6E-10 61.7 10.4 74 86-159 2-115 (117)
273 cd05879 Ig_P0 Immunoglobulin ( 98.1 4E-05 8.7E-10 62.5 10.4 77 248-324 6-106 (116)
274 cd00063 FN3 Fibronectin type 3 98.1 6E-05 1.3E-09 58.9 11.3 84 412-499 3-87 (93)
275 cd05751 Ig1_LILRB1_like First 98.0 7.8E-06 1.7E-10 63.9 5.2 65 250-320 11-75 (91)
276 cd05878 Ig_Aggrecan_like Immun 98.0 6.5E-05 1.4E-09 60.9 10.8 80 255-334 2-108 (110)
277 cd05775 Ig_SLAM-CD84_like_N N- 98.0 2.7E-05 5.9E-10 61.6 8.3 79 254-332 3-96 (97)
278 cd05718 Ig1_PVR_like First imm 98.0 3.6E-05 7.8E-10 61.3 8.8 77 256-332 1-97 (98)
279 PF13927 Ig_3: Immunoglobulin 98.0 1.7E-05 3.6E-10 59.5 6.5 57 258-319 18-75 (75)
280 cd07706 IgV_TCR_delta Immunogl 98.0 2.9E-05 6.3E-10 64.1 7.6 71 74-144 2-93 (116)
281 cd07705 Ig2_Necl-1 Second immu 98.0 5.7E-05 1.2E-09 57.6 8.6 59 89-147 2-70 (83)
282 cd04984 IgV_L_lambda Immunoglo 98.0 2.9E-05 6.2E-10 61.8 7.2 63 82-144 2-84 (98)
283 cd05755 Ig2_ICAM-1_like Second 98.0 4.3E-05 9.3E-10 59.8 7.8 71 77-147 7-86 (100)
284 cd05761 Ig2_Necl-1-4_like Seco 97.9 5.2E-05 1.1E-09 57.8 7.8 60 89-148 2-70 (82)
285 cd00098 IgC Immunoglobulin Con 97.9 2.7E-05 5.8E-10 61.7 6.3 64 84-147 11-86 (95)
286 smart00060 FN3 Fibronectin typ 97.9 6.4E-05 1.4E-09 57.1 7.9 76 534-629 8-83 (83)
287 cd04983 IgV_TCR_alpha_like Imm 97.9 7.5E-05 1.6E-09 60.8 8.6 74 248-321 6-93 (109)
288 cd07700 IgV_CD8_beta Immunoglo 97.9 5.2E-05 1.1E-09 61.4 7.3 62 82-143 2-92 (107)
289 cd05889 Ig1_DNAM-1_like First 97.9 0.00015 3.3E-09 56.6 9.4 69 87-155 1-93 (96)
290 cd05886 Ig1_Nectin-1_like Firs 97.8 0.0002 4.4E-09 56.4 10.1 76 257-332 2-98 (99)
291 smart00060 FN3 Fibronectin typ 97.8 0.00021 4.5E-09 54.1 10.2 77 413-494 4-82 (83)
292 cd05899 IgV_TCR_beta Immunoglo 97.8 0.00018 4E-09 58.6 10.2 32 166-199 3-34 (110)
293 cd05712 Ig_Siglec_N Immunoglob 97.8 0.0001 2.3E-09 60.9 8.7 70 76-145 4-102 (119)
294 cd05716 Ig_pIgR Immunoglobulin 97.8 0.00011 2.4E-09 58.4 8.3 65 81-145 2-86 (98)
295 cd05715 Ig_P0-like Immunoglobu 97.8 0.00029 6.2E-09 58.0 10.1 26 297-322 79-104 (116)
296 cd05902 Ig_Neurocan Immunoglob 97.7 0.00024 5.2E-09 57.2 9.1 80 255-334 2-108 (110)
297 PF07686 V-set: Immunoglobulin 97.7 0.00018 3.9E-09 59.1 8.8 86 247-332 8-114 (114)
298 cd00099 IgV Immunoglobulin var 97.7 0.00011 2.5E-09 59.3 7.1 72 251-322 2-91 (105)
299 cd05888 Ig1_Nectin-4_like Frst 97.7 0.00023 5E-09 56.7 8.6 76 257-332 2-99 (100)
300 cd05880 Ig_EVA1 Immunoglobulin 97.7 0.00027 6E-09 57.8 9.3 77 247-323 5-104 (115)
301 cd05883 Ig2_Necl-2 Second immu 97.7 0.00022 4.7E-09 53.5 7.7 76 258-333 2-80 (82)
302 cd05887 Ig1_Nectin-3_like Firs 97.7 0.0007 1.5E-08 52.9 10.7 76 257-332 2-95 (96)
303 cd07694 Ig2_CD4 Second immunog 97.7 0.00041 9E-09 51.8 8.8 75 251-333 10-86 (88)
304 cd05884 Ig2_Necl-3 Second immu 97.7 0.0002 4.4E-09 54.5 7.4 58 89-146 2-69 (83)
305 cd04981 IgV_H Immunoglobulin ( 97.7 0.00018 3.9E-09 59.1 7.4 69 76-144 2-97 (117)
306 cd00098 IgC Immunoglobulin Con 97.6 0.00012 2.7E-09 57.8 6.1 67 254-322 12-86 (95)
307 cd00096 Ig Immunoglobulin doma 97.6 0.00024 5.1E-09 52.2 7.5 58 89-146 1-66 (74)
308 cd05761 Ig2_Necl-1-4_like Seco 97.6 0.00024 5.2E-09 54.2 7.3 62 258-323 2-70 (82)
309 TIGR00864 PCC polycystin catio 97.6 0.34 7.5E-06 59.2 38.7 241 131-394 1665-1951(2740)
310 cd04980 IgV_L_kappa Immunoglob 97.6 0.00023 4.9E-09 57.6 7.5 74 247-320 7-93 (106)
311 PF08205 C2-set_2: CD80-like C 97.6 0.00015 3.2E-09 56.5 6.2 63 86-148 14-86 (89)
312 cd05901 Ig_Versican Immunoglob 97.6 0.0012 2.6E-08 53.3 11.0 80 255-334 2-115 (117)
313 cd04982 IgV_TCR_gamma Immunogl 97.6 0.00026 5.7E-09 58.3 7.4 73 247-319 5-98 (116)
314 KOG4258|consensus 97.6 0.00049 1.1E-08 72.2 10.6 133 419-579 497-654 (1025)
315 cd05755 Ig2_ICAM-1_like Second 97.6 0.00048 1E-08 54.0 8.1 41 164-204 4-46 (100)
316 cd05846 Ig1_MRC-OX-2_like Firs 97.5 0.00063 1.4E-08 53.9 8.7 78 255-332 1-96 (97)
317 PHA02987 Ig domain OX-2-like p 97.5 0.00081 1.7E-08 58.1 9.3 87 248-334 23-123 (189)
318 cd07705 Ig2_Necl-1 Second immu 97.5 0.00048 1E-08 52.5 7.2 61 258-322 2-70 (83)
319 PHA03273 envelope glycoprotein 97.5 0.0082 1.8E-07 59.0 16.8 78 124-204 199-280 (486)
320 cd04984 IgV_L_lambda Immunoglo 97.4 0.00039 8.5E-09 55.2 6.6 68 252-319 3-84 (98)
321 PHA03270 envelope glycoprotein 97.4 0.015 3.2E-07 56.8 17.1 80 123-205 182-265 (466)
322 cd05720 Ig_CD8_alpha Immunoglo 97.4 0.00052 1.1E-08 55.1 6.5 62 82-143 2-89 (104)
323 cd05711 Ig_FcalphaRI Immunoglo 97.4 0.00039 8.4E-09 54.6 5.6 66 250-318 10-75 (94)
324 smart00407 IGc1 Immunoglobulin 97.4 0.00083 1.8E-08 50.1 7.1 57 89-145 2-70 (75)
325 PHA03269 envelope glycoprotein 97.4 0.015 3.2E-07 57.5 17.1 79 124-205 290-373 (566)
326 cd05884 Ig2_Necl-3 Second immu 97.4 0.00095 2.1E-08 50.8 7.3 63 258-322 2-70 (83)
327 cd07698 IgC_MHC_I_alpha3 Class 97.4 0.0011 2.4E-08 52.0 7.9 73 71-146 2-83 (93)
328 cd05889 Ig1_DNAM-1_like First 97.3 0.0022 4.7E-08 50.1 8.9 75 256-330 1-93 (96)
329 cd07692 Ig_CD3_epsilon Immunog 97.3 0.00052 1.1E-08 48.0 4.7 52 84-145 5-56 (65)
330 cd00096 Ig Immunoglobulin doma 97.3 0.001 2.2E-08 48.7 6.7 64 258-321 1-66 (74)
331 cd07699 IgC_L Immunoglobulin C 97.2 0.00065 1.4E-08 53.9 5.5 75 72-146 2-89 (100)
332 cd05716 Ig_pIgR Immunoglobulin 97.2 0.0011 2.5E-08 52.6 6.9 71 251-321 3-87 (98)
333 cd05847 IgC_CH2_IgE CH2 domain 97.2 0.0013 2.7E-08 51.4 6.8 64 85-148 13-88 (94)
334 cd05772 IgC_SIRP Signal-regula 97.2 0.003 6.4E-08 51.0 9.1 64 82-146 17-92 (111)
335 cd07691 Ig_CD3_gamma_delta Imm 97.2 0.0015 3.2E-08 46.1 6.0 60 86-159 6-65 (69)
336 KOG0613|consensus 97.2 0.0053 1.1E-07 68.1 13.2 82 252-333 346-428 (1205)
337 smart00407 IGc1 Immunoglobulin 97.1 0.0034 7.4E-08 46.8 8.3 61 258-320 2-70 (75)
338 cd07700 IgV_CD8_beta Immunoglo 97.1 0.0016 3.4E-08 52.7 6.9 69 251-319 2-93 (107)
339 smart00406 IGv Immunoglobulin 97.1 0.0011 2.4E-08 50.4 5.7 55 88-142 1-81 (81)
340 KOG4367|consensus 97.1 0.00029 6.2E-09 67.5 2.8 73 539-633 451-523 (699)
341 cd05720 Ig_CD8_alpha Immunoglo 97.1 0.0019 4.2E-08 51.8 7.0 68 252-319 3-90 (104)
342 cd05768 IgC_CH4 CH4 domain (fo 97.1 0.001 2.2E-08 53.0 5.3 71 76-146 6-91 (102)
343 PHA03271 envelope glycoprotein 97.1 0.19 4E-06 49.0 20.6 82 123-206 207-292 (490)
344 cd07706 IgV_TCR_delta Immunogl 97.0 0.0018 4E-08 53.3 6.4 34 166-199 4-37 (116)
345 PHA02633 hypothetical protein; 97.0 0.0022 4.8E-08 43.9 5.4 40 121-160 16-55 (63)
346 cd05772 IgC_SIRP Signal-regula 97.0 0.0066 1.4E-07 49.0 9.3 35 170-204 15-50 (111)
347 cd07696 IgC_CH3 CH3 domain (th 97.0 0.0022 4.8E-08 50.3 6.0 70 77-146 5-86 (96)
348 cd05719 Ig2_PVR_like Second im 97.0 0.0041 8.9E-08 48.6 7.5 63 86-148 15-84 (95)
349 cd05770 IgC_beta2m Class I maj 97.0 0.0062 1.3E-07 47.3 8.3 61 84-145 13-82 (93)
350 cd07698 IgC_MHC_I_alpha3 Class 96.9 0.0054 1.2E-07 48.0 8.1 65 255-321 14-83 (93)
351 KOG4152|consensus 96.9 0.0015 3.2E-08 64.5 5.8 133 473-631 651-788 (830)
352 cd04981 IgV_H Immunoglobulin ( 96.9 0.0041 9E-08 51.1 7.5 71 249-319 6-97 (117)
353 cd05767 IgC_MHC_II_alpha Class 96.8 0.0075 1.6E-07 47.0 7.9 59 84-145 13-83 (94)
354 cd05769 IgC_TCR_beta T cell re 96.8 0.0044 9.5E-08 50.2 6.8 71 77-147 9-93 (115)
355 cd05766 IgC_MHC_II_beta Class 96.7 0.0091 2E-07 46.7 8.0 60 84-146 12-83 (94)
356 cd05770 IgC_beta2m Class I maj 96.7 0.0084 1.8E-07 46.5 7.5 63 255-320 15-82 (93)
357 cd05721 IgV_CTLA-4 Immunoglobu 96.7 0.0085 1.8E-07 47.8 7.6 68 75-142 2-93 (115)
358 PF08205 C2-set_2: CD80-like C 96.7 0.0043 9.4E-08 48.2 5.8 66 255-323 14-86 (89)
359 KOG1480|consensus 96.7 0.0008 1.7E-08 69.8 1.9 165 71-238 24-209 (909)
360 cd07703 Ig2_Nectin-2_like Seco 96.7 0.007 1.5E-07 47.2 6.6 63 86-148 15-84 (95)
361 smart00406 IGv Immunoglobulin 96.7 0.0064 1.4E-07 46.1 6.5 61 257-317 1-81 (81)
362 cd05847 IgC_CH2_IgE CH2 domain 96.6 0.01 2.2E-07 46.3 7.4 68 255-323 14-88 (94)
363 PHA03269 envelope glycoprotein 96.6 0.12 2.7E-06 51.3 16.1 63 50-114 291-373 (566)
364 cd05766 IgC_MHC_II_beta Class 96.6 0.012 2.7E-07 45.9 7.8 66 254-321 13-83 (94)
365 cd05712 Ig_Siglec_N Immunoglob 96.6 0.012 2.6E-07 48.6 8.1 74 247-320 6-102 (119)
366 KOG0613|consensus 96.5 0.04 8.8E-07 61.5 13.3 211 258-500 208-424 (1205)
367 cd05767 IgC_MHC_II_alpha Class 96.5 0.014 3.1E-07 45.5 7.2 61 255-320 15-83 (94)
368 PHA03270 envelope glycoprotein 96.4 0.33 7.2E-06 47.7 17.4 63 49-113 183-264 (466)
369 TIGR00864 PCC polycystin catio 96.4 4.3 9.3E-05 50.4 41.1 69 132-201 1480-1550(2740)
370 cd07691 Ig_CD3_gamma_delta Imm 96.3 0.015 3.3E-07 41.1 6.0 49 255-319 6-54 (69)
371 cd04985 IgC_CH1 CH1 domain (fi 96.3 0.021 4.6E-07 44.7 7.6 61 85-146 15-87 (95)
372 cd07704 Ig2_Nectin-3-4_like Se 96.3 0.019 4.1E-07 44.6 7.2 67 80-146 10-84 (97)
373 PF07654 C1-set: Immunoglobuli 96.3 0.013 2.8E-07 44.7 6.3 60 85-147 7-78 (83)
374 PF09294 Interfer-bind: Interf 96.3 0.024 5.2E-07 45.7 8.2 81 537-632 11-98 (106)
375 KOG1480|consensus 96.3 0.0055 1.2E-07 63.9 5.3 77 72-148 130-208 (909)
376 PF08204 V-set_CD47: CD47 immu 96.3 0.0088 1.9E-07 48.9 5.4 75 84-159 25-121 (130)
377 cd07697 IgC_TCR_gamma T cell r 96.3 0.02 4.3E-07 44.8 7.2 62 82-145 12-84 (96)
378 cd07699 IgC_L Immunoglobulin C 96.3 0.011 2.4E-07 46.8 5.9 66 254-321 16-89 (100)
379 PHA03376 BARF1; Provisional 96.2 0.018 3.9E-07 49.6 6.7 64 48-111 87-164 (221)
380 cd07692 Ig_CD3_epsilon Immunog 96.1 0.0081 1.8E-07 42.2 3.6 50 254-319 6-55 (65)
381 cd07689 Ig2_VCAM-1 Second immu 95.9 0.043 9.3E-07 42.4 7.2 63 83-145 12-85 (99)
382 PF07654 C1-set: Immunoglobuli 95.9 0.043 9.2E-07 41.8 7.4 62 255-321 8-77 (83)
383 cd04986 IgC_CH2 CH2 domain (se 95.9 0.02 4.2E-07 44.9 5.5 71 76-146 9-89 (99)
384 cd05768 IgC_CH4 CH4 domain (fo 95.9 0.021 4.7E-07 45.4 5.8 66 255-320 16-90 (102)
385 cd07696 IgC_CH3 CH3 domain (th 95.8 0.038 8.2E-07 43.3 6.7 36 167-202 5-42 (96)
386 KOG4597|consensus 95.6 0.025 5.4E-07 55.7 5.9 89 72-160 197-294 (560)
387 cd05719 Ig2_PVR_like Second im 95.6 0.03 6.4E-07 43.8 5.3 67 256-324 16-85 (95)
388 PHA03271 envelope glycoprotein 95.6 2.2 4.8E-05 42.0 18.6 146 49-203 208-387 (490)
389 PF08204 V-set_CD47: CD47 immu 95.5 0.07 1.5E-06 43.7 7.4 78 255-333 27-120 (130)
390 KOG4802|consensus 95.5 0.33 7.2E-06 47.2 13.0 128 357-497 209-342 (516)
391 cd07703 Ig2_Nectin-2_like Seco 95.5 0.038 8.3E-07 43.1 5.7 70 256-327 16-88 (95)
392 PF10179 DUF2369: Uncharacteri 95.5 0.13 2.9E-06 48.9 10.3 135 468-629 127-286 (300)
393 cd07697 IgC_TCR_gamma T cell r 95.5 0.096 2.1E-06 40.9 7.8 28 255-282 16-45 (96)
394 PHA02633 hypothetical protein; 95.3 0.087 1.9E-06 36.3 6.0 39 296-334 16-54 (63)
395 PHA03042 CD47-like protein; Pr 95.3 0.056 1.2E-06 49.6 6.7 72 84-158 29-105 (286)
396 PF01108 Tissue_fac: Tissue fa 95.2 0.14 3.1E-06 41.2 8.5 79 411-495 23-105 (107)
397 PF01108 Tissue_fac: Tissue fa 95.2 0.13 2.9E-06 41.3 8.2 75 534-630 29-106 (107)
398 cd04986 IgC_CH2 CH2 domain (se 95.1 0.057 1.2E-06 42.3 5.4 35 168-202 11-47 (99)
399 PHA02982 hypothetical protein; 95.1 0.098 2.1E-06 45.8 7.2 115 80-202 33-173 (251)
400 KOG4367|consensus 95.0 0.025 5.3E-07 54.7 3.9 81 421-507 450-530 (699)
401 cd05769 IgC_TCR_beta T cell re 94.9 0.12 2.5E-06 42.0 7.1 70 254-323 17-94 (115)
402 cd07704 Ig2_Nectin-3-4_like Se 94.9 0.071 1.5E-06 41.5 5.4 71 249-321 10-84 (97)
403 KOG4597|consensus 94.5 0.046 1E-06 53.9 4.4 85 249-333 205-292 (560)
404 cd04985 IgC_CH1 CH1 domain (fi 94.5 0.15 3.3E-06 39.8 6.6 64 255-321 16-87 (95)
405 cd05721 IgV_CTLA-4 Immunoglobu 94.4 0.37 8.1E-06 38.6 8.6 19 299-317 75-93 (115)
406 PHA03273 envelope glycoprotein 94.3 4.2 9.1E-05 40.8 17.1 92 50-143 200-322 (486)
407 PF06328 Lep_receptor_Ig: Ig-l 94.2 0.33 7.1E-06 37.2 7.6 66 77-142 9-81 (89)
408 PF07354 Sp38: Zona-pellucida- 93.9 0.096 2.1E-06 48.0 4.9 47 99-145 11-59 (271)
409 PF09294 Interfer-bind: Interf 93.8 0.18 3.9E-06 40.5 5.9 68 420-489 11-87 (106)
410 PHA02914 Immunoglobulin-like d 93.3 0.65 1.4E-05 45.1 9.4 119 79-204 272-422 (500)
411 COG3401 Fibronectin type 3 dom 91.6 7.3 0.00016 37.5 13.9 161 417-630 172-333 (343)
412 PF07354 Sp38: Zona-pellucida- 91.5 0.27 5.9E-06 45.1 4.4 50 268-321 11-60 (271)
413 PF05790 C2-set: Immunoglobuli 91.4 3.1 6.8E-05 31.1 9.3 52 100-157 26-78 (80)
414 cd07689 Ig2_VCAM-1 Second immu 90.7 1.2 2.7E-05 34.6 6.6 69 252-321 12-86 (99)
415 PF11465 Receptor_2B4: Natural 90.4 1.1 2.3E-05 35.1 6.0 38 121-158 69-107 (108)
416 PHA03042 CD47-like protein; Pr 90.0 2 4.3E-05 39.8 8.4 69 256-333 32-105 (286)
417 COG4733 Phage-related protein, 89.8 1.3 2.7E-05 47.7 8.0 125 467-631 658-785 (952)
418 PF11465 Receptor_2B4: Natural 89.5 3.6 7.9E-05 32.3 8.3 36 289-324 61-97 (108)
419 KOG3632|consensus 89.2 0.17 3.6E-06 54.7 1.2 158 413-624 581-739 (1335)
420 PF10179 DUF2369: Uncharacteri 88.6 16 0.00035 35.1 13.8 29 467-495 13-42 (300)
421 PHA02982 hypothetical protein; 87.9 2.4 5.2E-05 37.5 7.1 30 296-325 98-127 (251)
422 PF07495 Y_Y_Y: Y_Y_Y domain; 87.6 2 4.4E-05 30.7 5.8 46 447-496 9-55 (66)
423 PHA02914 Immunoglobulin-like d 87.4 32 0.00069 34.0 23.9 77 249-325 273-373 (500)
424 PF07495 Y_Y_Y: Y_Y_Y domain; 87.0 1.6 3.6E-05 31.2 5.0 26 604-630 30-55 (66)
425 PF09067 EpoR_lig-bind: Erythr 85.5 5.5 0.00012 31.6 7.5 81 409-495 7-96 (104)
426 KOG1026|consensus 85.2 1 2.2E-05 48.7 4.3 247 80-334 61-364 (774)
427 PF05790 C2-set: Immunoglobuli 85.0 13 0.00029 27.8 9.0 51 270-332 27-78 (80)
428 KOG3632|consensus 84.0 3 6.5E-05 45.7 6.9 133 410-573 672-813 (1335)
429 PF03921 ICAM_N: Intercellular 82.6 20 0.00043 27.6 9.2 79 74-160 6-88 (91)
430 KOG4228|consensus 80.6 5.1 0.00011 45.0 7.3 105 371-501 1-105 (1087)
431 PHA02865 MHC-like TNF binding 79.9 7.3 0.00016 38.0 7.4 21 88-108 216-238 (338)
432 PF02480 Herpes_gE: Alphaherpe 79.2 17 0.00038 37.4 10.4 39 122-160 88-127 (439)
433 PHA03189 UL14 tegument protein 78.9 12 0.00027 35.3 8.2 70 78-148 59-158 (348)
434 PHA03052 Hypothetical protein; 78.7 5 0.00011 28.4 4.3 35 78-112 4-41 (69)
435 KOG1225|consensus 77.4 7.2 0.00016 40.7 7.0 153 415-620 371-524 (525)
436 KOG4152|consensus 76.8 12 0.00027 38.1 8.0 122 362-498 652-789 (830)
437 PHA03052 Hypothetical protein; 75.7 14 0.00029 26.3 5.7 38 168-205 4-43 (69)
438 KOG4228|consensus 74.9 20 0.00044 40.5 9.8 73 419-498 173-245 (1087)
439 COG3401 Fibronectin type 3 dom 73.4 17 0.00036 35.2 7.7 68 424-498 84-153 (343)
440 PHA02865 MHC-like TNF binding 72.8 13 0.00028 36.3 7.0 21 257-277 216-238 (338)
441 PF09240 IL6Ra-bind: Interleuk 71.9 46 0.00099 26.1 9.2 82 413-498 2-90 (99)
442 PF06832 BiPBP_C: Penicillin-B 71.5 43 0.00093 25.6 9.4 55 88-150 31-85 (89)
443 PF02124 Marek_A: Marek's dise 71.5 80 0.0017 28.7 12.2 61 258-318 92-158 (211)
444 PF06832 BiPBP_C: Penicillin-B 70.3 46 0.001 25.4 9.6 72 241-326 13-86 (89)
445 KOG1948|consensus 69.5 99 0.0021 34.3 12.9 22 468-489 945-966 (1165)
446 PLN02533 probable purple acid 69.4 24 0.00051 36.5 8.6 21 601-621 101-121 (427)
447 TIGR00868 hCaCC calcium-activa 69.0 2.1E+02 0.0046 32.5 19.1 88 538-633 766-860 (863)
448 PF02124 Marek_A: Marek's dise 66.8 1E+02 0.0022 28.0 14.3 95 102-203 8-117 (211)
449 KOG1026|consensus 66.4 9.8 0.00021 41.5 5.2 143 80-237 201-353 (774)
450 KOG4806|consensus 64.5 20 0.00043 34.7 6.2 28 602-629 409-436 (454)
451 PLN02533 probable purple acid 60.6 69 0.0015 33.2 10.0 70 410-487 41-121 (427)
452 PHA03283 envelope glycoprotein 59.9 70 0.0015 33.1 9.4 38 122-159 133-170 (542)
453 cd05890 Ig2_Nectin-1_like Seco 58.2 22 0.00047 27.4 4.3 68 88-155 22-96 (98)
454 PHA03286 envelope glycoprotein 51.9 1.2E+02 0.0026 30.8 9.4 77 122-198 126-225 (492)
455 PF06328 Lep_receptor_Ig: Ig-l 51.3 26 0.00057 26.9 3.9 41 167-207 9-53 (89)
456 cd05890 Ig2_Nectin-1_like Seco 50.3 35 0.00076 26.3 4.3 62 257-320 22-86 (98)
457 PF02010 REJ: REJ domain; Int 48.8 30 0.00066 36.0 5.4 28 468-495 147-176 (440)
458 PF10342 GPI-anchored: Ser-Thr 45.1 85 0.0019 23.9 6.2 66 540-622 12-78 (93)
459 PHA03240 envelope glycoprotein 44.4 33 0.00072 30.6 3.9 61 80-140 32-122 (258)
460 PF14292 SusE: SusE outer memb 43.6 1.1E+02 0.0024 25.0 6.9 32 538-578 42-74 (122)
461 PF11141 DUF2914: Protein of u 42.5 1.1E+02 0.0024 21.9 5.8 55 102-156 8-64 (66)
462 PF11344 DUF3146: Protein of u 36.8 24 0.00052 25.6 1.5 15 609-623 66-80 (80)
463 PF01688 Herpes_gI: Alphaherpe 35.4 76 0.0017 27.4 4.7 34 124-157 125-158 (161)
464 PHA03112 IL-18 binding protein 35.4 1.8E+02 0.0039 24.5 6.6 65 83-147 35-120 (141)
465 PF09067 EpoR_lig-bind: Erythr 34.0 1.8E+02 0.0039 23.1 6.3 72 536-628 17-95 (104)
466 PHA03282 envelope glycoprotein 33.6 38 0.00083 34.3 3.0 20 124-143 334-353 (540)
467 PF02480 Herpes_gE: Alphaherpe 32.4 39 0.00085 34.9 3.0 21 124-144 270-290 (439)
468 PF11049 KSHV_K1: Glycoprotein 30.2 1.4E+02 0.0031 21.2 4.3 45 180-234 2-46 (71)
469 PF03921 ICAM_N: Intercellular 29.2 2.7E+02 0.0059 21.5 10.4 78 245-334 8-87 (91)
470 PHA03282 envelope glycoprotein 26.8 1.2E+02 0.0027 30.9 5.1 25 120-144 121-145 (540)
471 PHA03240 envelope glycoprotein 26.2 1.4E+02 0.0031 26.8 4.8 27 171-198 33-59 (258)
472 PF02440 Adeno_E3_CR1: Adenovi 25.8 1.9E+02 0.0041 20.5 4.5 21 83-107 2-22 (63)
473 PF07353 Uroplakin_II: Uroplak 24.3 63 0.0014 27.4 2.3 24 601-624 100-123 (184)
474 PHA03189 UL14 tegument protein 24.3 4E+02 0.0087 25.7 7.6 19 250-268 62-80 (348)
475 TIGR03000 plancto_dom_1 Planct 23.5 1.1E+02 0.0024 22.5 3.1 27 598-624 24-50 (75)
476 PF15096 G6B: G6B family 23.5 1.4E+02 0.0031 26.1 4.3 27 131-160 82-108 (224)
477 PHA03290 envelope glycoprotein 21.0 2.1E+02 0.0045 27.9 5.2 37 124-160 130-166 (357)
478 PHA03292 envelope glycoprotein 20.6 1.8E+02 0.0038 28.9 4.7 37 123-159 128-164 (413)
No 1
>KOG3513|consensus
Probab=100.00 E-value=1.2e-66 Score=542.69 Aligned_cols=582 Identities=25% Similarity=0.346 Sum_probs=472.7
Q ss_pred cccccCCCCCCCCCCccccccceeeEEEEecccCCCCCceEEeeCceEEEcCCCC--CCeEEEEEEe-------------
Q psy15127 3 THLDTNHAHPMSSPRAEIEPATRTNRVSISGDPGFDSRRSRSIFGSVLGARGALS--DDQWKLIAKE------------- 67 (633)
Q Consensus 3 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~--~G~Y~C~a~~------------- 67 (633)
.-..++|.-|...|.+.+.|....... ....+++|+....+|+|.|.+|.. .+.|.|.|.+
T Consensus 152 ~~~~L~C~pP~~~P~l~~~W~~~~~~~----~~~~~~~r~~~~~~G~Lyfs~V~~~D~~~Y~C~a~~~~~~~~v~~~~~~ 227 (1051)
T KOG3513|consen 152 DGVVLPCNPPAHFPPLRYYWMLNEFPH----FVQIDNRRVFSQENGNLYFSNVETSDFGNYICSATFPSTQTIVQGPPFP 227 (1051)
T ss_pred CceEEeCCCCCCCCCccEEehhccCCc----ccccCcceeEecccceEEEeecchhhcCceEEEEEchhhcccccCCcee
Confidence 345677888888887666633222211 223366788888899999999999 9999999998
Q ss_pred ---------cCcCCeeeeCCC-ceEEEcCCeEEEEEEEeccCCCeEEEEeCCccCCCCC-eEEcccceEEEccCCCCCCe
Q psy15127 68 ---------ALIKPFPISEPS-DATVLSGSVVEFVCRVGGDPLPTILWRRDDGKMPTGR-AKILDDRSLQIENVGPQDEG 136 (633)
Q Consensus 68 ---------v~~~p~~~~~~~-~~~~~~G~~~~L~C~~~~~p~p~i~W~~~~~~i~~~~-~~~~~~~~L~i~~v~~~d~G 136 (633)
...+|.|...++ +..+..|+.+.|.|.+.|+|.|+|.|+|.+.....++ ........|.|.+++.+|+|
T Consensus 228 L~~~~~~~~~~~~P~i~~~~p~~~~a~~G~~v~LECfA~G~P~P~i~W~k~~g~~~~~r~~~~~~~~vL~I~nv~~~D~G 307 (1051)
T KOG3513|consen 228 LIVRSNNVMREYAPKILVPFPETETALKGQSVKLECFALGNPTPQIKWRKVDGKPPPRRATYSNYGKVLKIPNVQYEDAG 307 (1051)
T ss_pred EEEcccccccccCCccccCCCCcccccCCCeEEEEEEecCCCCCcEEEEeCCCCCCCcceeeeccccEEEecccCcCCCe
Confidence 234566655544 6778999999999999999999999999887443333 33334678999999999999
Q ss_pred EEEEEEEeCCceEEEEEEEEEEeeccccccCCCceEEecCCcEEEEEeCCCCCCCCeEEEEECCEEeccCCC-eeEEecc
Q psy15127 137 LYICDVENLVGSISLRASLTVHLLRDDFRAEPKDTRVASGETALLECGPPKGQPEPTLHWKKNGQFIDLESS-KSLDLSR 215 (633)
Q Consensus 137 ~Y~C~~~n~~g~~s~~~~l~V~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~i~W~~~~~~~~~~~~-~~~~~~~ 215 (633)
.|.|.|+|..|.....+.|.|..+ |.+...+.+..+..|+++.|.|. +.|.|.|+|+|++||.++..... ....+..
T Consensus 308 ~Y~C~AeN~~G~~~~~~~v~v~a~-P~w~~~~~d~~~~~gs~v~~eC~-a~g~P~p~v~WlkNg~pl~~~~r~~~~~i~~ 385 (1051)
T KOG3513|consen 308 EYECIAENSRGSATHSGHVTVYAP-PYWLQKPQDTEADTGSNVTLECK-ASGKPNPTVKWLKNGEPLEPAERDPRYKIDD 385 (1051)
T ss_pred EEEEEEecccccceeeEEEEEecC-chhhcccceeEecCCCCeEEEEE-ecCCCCCceEEeeCCeecCccCCCcceEEeC
Confidence 999999999999999999999999 99999999999999999999999 68999999999999999985444 3455666
Q ss_pred ceeeeEEEe----eeEEEEeecCCC------------CCCcccccccceeEEecCCceEEEEEEEeeecCCeeEEEECCE
Q psy15127 216 RTLGWLRVR----PLYWNVARPRAN------------LNPRYIGRKMASLLIWNHPRVNRLSCFAEGSPLPSVFWTQEGS 279 (633)
Q Consensus 216 ~~~~~~~~~----g~y~C~a~~~~~------------~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~v~W~~~g~ 279 (633)
+.+.+.++. |.|+|.|+|..+ ..|.+....+........|..+.|.|.+.+.|.|.+.|.+++.
T Consensus 386 g~L~is~v~~~dsg~YQC~A~Nk~G~i~anA~L~V~a~~P~f~~~p~~~~~~a~~g~~v~i~C~~~asP~p~~~W~k~~~ 465 (1051)
T KOG3513|consen 386 GTLIISNVQESDSGVYQCIAENKYGTIYANAELKVLASAPVFPLNPVERKVMAVVGGTVTIDCKPFASPKPKVSWLKGGE 465 (1051)
T ss_pred CEEEEEecccccCeEEEeeeecccceEeeeeEEEEEccCCCCCCCccceEEEEEeCCeEEEeeccCCCCcceEEEEcCCc
Confidence 666666554 899999999887 2466666666777778889999999999999999999999998
Q ss_pred EEEeccCCccceEEEccCceEEEcCCCCCCCeEEEEEEEeCCceeEEEEEEEEEecccCCC-------------------
Q psy15127 280 QVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVREFCVLPK------------------- 340 (633)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~~~~p~------------------- 340 (633)
.+. ..+|+.+..+++|.|.+++.+|+|.|+|.|.|.+|.+...+.|.|.+...+-.
T Consensus 466 ~~~-----~~~r~~i~edGtL~I~n~t~~DaG~YtC~A~N~~G~a~~~~~L~Vkd~tri~~~P~~~~v~~g~~v~l~Ce~ 540 (1051)
T KOG3513|consen 466 KLL-----QSGRIRILEDGTLEISNVTRSDAGKYTCVAENKLGKAESTGNLIVKDATRITLAPSNTDVKVGESVTLTCEA 540 (1051)
T ss_pred ccc-----cCceEEECCCCcEEecccCcccCcEEEEEEEcccCccceEEEEEEecCceEEeccchhhhccCceEEEEeec
Confidence 432 45889999999999999999999999999999999999999999997432211
Q ss_pred -------ceEEeCCCcccc-------------CCCCCceEEecccccCCEEEEEEEEcCCcceeEEEEEEeecCCCCCce
Q psy15127 341 -------GTFTLGQPNLAT-------------GNSDLRRIACDLRETDSGLYTCTASSESGETSWSASLSVEPRPGPHAV 400 (633)
Q Consensus 341 -------p~~~~~~~~~~~-------------g~p~~~~~i~~~~~~d~g~y~c~a~n~~g~~~~~~~l~v~~~p~~~~~ 400 (633)
..+.|....... |.....++|.++...|+|.|.|+|.-.....+..+.|.|.++|.+
T Consensus 541 shD~~ld~~f~W~~nG~~id~~~~~~~~~~~~~~~~g~L~i~nv~l~~~G~Y~C~aqT~~Ds~s~~A~l~V~gpPgp--- 617 (1051)
T KOG3513|consen 541 SHDPSLDITFTWKKNGRPIDFNPDGDHFEINDGSDSGRLTIANVSLEDSGKYTCVAQTALDSASARADLLVRGPPGP--- 617 (1051)
T ss_pred ccCCCcceEEEEEECCEEhhccCCCCceEEeCCcCccceEEEeeccccCceEEEEEEEeecchhcccceEEecCCCC---
Confidence 122332222100 222245789999999999999999998888888899999987654
Q ss_pred ecCCCCCCCCCCCCCcEEEEeeCCeEEEEeCCCCCCCCCCcceeEEEEEEEEecCCCCeEEEEEeeee----ceEEEecC
Q psy15127 401 HRMPDSGLFPGPPAAPVILNTTRGSVTLGWGEPEPRGGGVAPVIGYTVEYFSSDLQTGWVVAAHRITS----TSITVSDL 476 (633)
Q Consensus 401 ~~~~~~~~~p~~p~~~~~~~~~~~~i~l~W~~~~~~~~~~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~----~~~~i~~L 476 (633)
|..+.......+++.|+|++..+ |+.+|..|.|+.+.. ....|+.+...... .+.++.+|
T Consensus 618 ------------P~~v~~~~i~~t~~~lsW~~g~d---n~SpI~~Y~iq~rt~-~~~~W~~v~~vp~~~~~~~sa~vv~L 681 (1051)
T KOG3513|consen 618 ------------PPDVHVDDISDTTARLSWSPGSD---NNSPIEKYTIQFRTP-FPGKWKAVTTVPGNITGDESATVVNL 681 (1051)
T ss_pred ------------CCceeEeeeccceEEEEeecCCC---CCCCceEEeEEecCC-CCCcceEeeECCCcccCccceeEEcc
Confidence 77888889999999999999995 468999999999987 45778876633322 24778999
Q ss_pred CCCCeEEEEEEEEeccccCCCCCCCCceeecCCCCCCCcchHHHHHHHhCCceEEeeeee--------------------
Q psy15127 477 KPDTSYMFIVRAENSHGLGIPSPVSPITRTLGLNSLVPQHLLDEARARLGTKVVNLRELI-------------------- 536 (633)
Q Consensus 477 ~p~~~Y~~~v~a~n~~G~g~~s~~~~~~~t~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~-------------------- 536 (633)
.|...|+|||.|.|.+|.|++|.++...+|.++.|...|..+..-...+.+.+|.|..+.
T Consensus 682 ~Pwv~YeFRV~AvN~iG~gePS~pS~~~rT~ea~P~~~P~nv~g~g~~~~eLvItW~Pl~~~~qNG~gfgY~Vswr~~g~ 761 (1051)
T KOG3513|consen 682 SPWVEYEFRVVAVNSIGIGEPSPPSEKVRTPEAAPSVNPSNVKGGGGSPTELVITWEPLPEEEQNGPGFGYRVSWRPQGA 761 (1051)
T ss_pred CCCcceEEEEEEEcccccCCCCCCccceecCCCCCccCCccccccCCCCceEEEEeccCCHHHccCCCceEEEEEEeCCC
Confidence 999999999999999999999999999999999999999888776667777888776443
Q ss_pred --------------------------------------------------------------------ecccceEEEEEE
Q psy15127 537 --------------------------------------------------------------------PTASTAVRITWE 548 (633)
Q Consensus 537 --------------------------------------------------------------------~~~~~si~v~W~ 548 (633)
.++++.+.|+|+
T Consensus 762 ~~~W~~~~v~~~d~~~~V~~~~st~~~tpyevKVqa~N~~GeGp~s~~~v~~S~Ed~P~~ap~~~~~~~~s~s~~~v~W~ 841 (1051)
T KOG3513|consen 762 DKEWKEVIVSNQDQPRYVVSNESTEPFTPYEVKVQAINDQGEGPESQVTVGYSGEDEPPVAPTKLSAKPLSSSEVNLSWK 841 (1051)
T ss_pred CcccceeEecccCCceEEEcCCCCCCcceeEEEEEEecCCCCCCCCceEEEEcCCCCCCCCCccceeecccCceEEEEec
Confidence 348899999999
Q ss_pred EecCCCcccccchhhhhcceeEEEEEEcCCCcccceeeeeeccceeEeecCCccceEEeeccccceeEEEEEeccccccc
Q psy15127 549 VSWGSVPQHLLDEARARLGTKVVNLRELIPTASTAVRITWEKYNMATVMNAATTTSYTVTHLRKFTKYEFFLVPFFKTVE 628 (633)
Q Consensus 549 ~p~~~~p~~~~~~~~~i~~y~~i~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~i~~L~~~t~Y~~~v~a~n~~g~ 628 (633)
+| ...+|.++|| .|.|...+..+ ... ..+...++.++.+|+||++.|.|.|.|+|.|++|.
T Consensus 842 ~~--------~~~nG~l~gY-~v~Y~~~~~~~--------~~~--~~~~i~~~~~~~~ltgL~~~T~Y~~~vrA~nsaG~ 902 (1051)
T KOG3513|consen 842 PP--------LWDNGKLTGY-EVKYWKINEKE--------GSL--SRVQIAGNRTSWRLTGLEPNTKYRFYVRAYTSAGG 902 (1051)
T ss_pred Cc--------CccCCcccee-EEEEEEcCCCc--------ccc--cceeecCCcceEeeeCCCCCceEEEEEEEecCCCC
Confidence 65 4556999999 99999887764 111 23335588999999999999999999999999999
Q ss_pred cccCC
Q psy15127 629 GARLD 633 (633)
Q Consensus 629 g~~s~ 633 (633)
||+|.
T Consensus 903 Gp~s~ 907 (1051)
T KOG3513|consen 903 GPASS 907 (1051)
T ss_pred CCCcc
Confidence 99873
No 2
>KOG4221|consensus
Probab=100.00 E-value=3e-57 Score=468.67 Aligned_cols=530 Identities=25% Similarity=0.385 Sum_probs=419.5
Q ss_pred CceEEeeCceEEEcCCCC-------CCeEEEEEEe--------------cCcCCeeeeCCCceEEEcCCeEEEEEEEecc
Q psy15127 40 RRSRSIFGSVLGARGALS-------DDQWKLIAKE--------------ALIKPFPISEPSDATVLSGSVVEFVCRVGGD 98 (633)
Q Consensus 40 ~~~~~~~~~~L~i~~v~~-------~G~Y~C~a~~--------------v~~~p~~~~~~~~~~~~~G~~~~L~C~~~~~ 98 (633)
.|.+...||+|+|.++.. +|.|+|.|.- +...+.|..++.+..+..|+++.|.|.+.+.
T Consensus 88 ~~~~~LsNgSl~i~~v~~~kh~~~~eg~Yqc~atv~~~gsi~Sr~a~v~~a~~~~f~~~~~~~t~~~g~ta~f~c~vn~e 167 (1381)
T KOG4221|consen 88 DRRQLLSNGSLYISSVLASKHNKVDEGVYQCLATVEDVGSILSRTAKVALAGLADFALQPESTTLLYGQTALFSCEVNAE 167 (1381)
T ss_pred hHHhhccCCceeEeeecccccccccCceEEEEEEccccceeecceEEEEecccCccccCccceeEecCCcEEEEEEEcCc
Confidence 566688899999998875 9999999977 2344677788889999999999999999998
Q ss_pred CCCeEEEEeCCccCCC-CCeEEcccceEEEccCCCCCCeEEEEEEEeCCce-EEEEEEEEEEeec-----cccccCCCce
Q psy15127 99 PLPTILWRRDDGKMPT-GRAKILDDRSLQIENVGPQDEGLYICDVENLVGS-ISLRASLTVHLLR-----DDFRAEPKDT 171 (633)
Q Consensus 99 p~p~i~W~~~~~~i~~-~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~n~~g~-~s~~~~l~V~~~~-----p~~~~~~~~~ 171 (633)
|.|.++|.++..+++. ++.....++.|.|.+++.+|.|.|+|.|.+.... .+..+.|+|...+ ..|...|...
T Consensus 168 ~~p~i~w~kn~~pl~~~~r~i~lpsG~L~I~~~qp~d~g~yrc~vt~g~~~r~S~~a~ltv~s~~~~~~~~~fl~~p~~~ 247 (1381)
T KOG4221|consen 168 PVPTIMWLKNDQPLPLDSRVIVLPSGALEISGLQPSDTGEYRCVVTGGASQRTSNEAELTVLSDPGALNKLVFLDEPSNA 247 (1381)
T ss_pred cCceeEEecccccccCCCcEEEcCCCcEEecccccCCCceEEEEEecCCcCCccceeEEEecCCcccccceeeecCCCcc
Confidence 9999999999998764 4677778999999999999999999999987544 5788888888331 2356788888
Q ss_pred EEecCCcEEEEEeCCCCCCCCeEEEEECCEEeccCCCeeEEeccceeeeEEE----eeeEEEEeecCCC-----------
Q psy15127 172 RVASGETALLECGPPKGQPEPTLHWKKNGQFIDLESSKSLDLSRRTLGWLRV----RPLYWNVARPRAN----------- 236 (633)
Q Consensus 172 ~~~~g~~~~l~C~~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~----~g~y~C~a~~~~~----------- 236 (633)
.+.+|+++.|+|. +.+.|.|.|.|.|||..+..+...........+.+.++ +|.|+|.|.|...
T Consensus 248 ~v~~g~~v~leCv-vs~~p~p~v~Wlrng~~i~~ds~rivl~g~~slliS~a~~~dSg~YtC~Atn~~D~idasaev~V~ 326 (1381)
T KOG4221|consen 248 VVVEGDDVVLECV-VSGVPKPSVKWLRNGEKISVDSYRIVLVGGSSLLISNATDDDSGKYTCRATNTNDSIDASAEVTVL 326 (1381)
T ss_pred ccccCCcEEEEEE-ecCCCCCceEEeeCCeeeeecceEEEEecccceEEeccccccCceEEEEecCCCcccccceEEEEE
Confidence 9999999999999 79999999999999999988774444444555555544 4899999999433
Q ss_pred CCCcccccccceeEEecCCceEEEEEEEeeecCCeeEEEECCEEEEeccCCccceEEEccCceEEEcCCCCCCCeEEEEE
Q psy15127 237 LNPRYIGRKMASLLIWNHPRVNRLSCFAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCS 316 (633)
Q Consensus 237 ~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~ 316 (633)
.+|.+... ...+...++.++.|.|.+.|.|.+.+.|+|+|..+. + .....+..++.|.|.-+-..|.|.|+|.
T Consensus 327 a~P~~~~~--p~~l~A~e~~die~ec~~~g~p~p~v~w~kNgd~~i--p---sdy~ki~~~~~lrIlgi~~sdeg~yQcv 399 (1381)
T KOG4221|consen 327 APPGFTKA--PTTLVAHESMDIEFECPVSGKPIPTVRWYKNGDRII--P---SDYFKIVGGGNLRILGIVKSDEGFYQCV 399 (1381)
T ss_pred cCCCCCCC--CcceeeeeccceeEeCCCCCCCcceEEEEecCcccC--c---ccceEecCCCCcEEEEEecccchhhhhh
Confidence 12222222 223344558999999999999999999999998764 2 2444555666699999999999999999
Q ss_pred EEeCCceeEEEEEEEEEecccC---------CCc-----------eEEeCCCccccCCCC--------------------
Q psy15127 317 ALSVAGSTTVRAFLQVREFCVL---------PKG-----------TFTLGQPNLATGNSD-------------------- 356 (633)
Q Consensus 317 a~n~~g~~~~~~~l~v~~~~~~---------p~p-----------~~~~~~~~~~~g~p~-------------------- 356 (633)
+.|..|.....+.+.+...+.. |.- .++|.+.. ..+.++
T Consensus 400 aen~~G~a~a~a~l~vv~~p~~~~s~~~~sap~~lv~~~~~srfi~~tw~~p~-~~~g~i~~~~v~~~~~~~~rer~~~t 478 (1381)
T KOG4221|consen 400 AENDAGSAQAAAQLEVVPQPASASSDLLPSAPRDLVANLVSSRFIQLTWRPPA-QISGNISTYTVFYKVEGDVRERLQNT 478 (1381)
T ss_pred hccCcccccchhhheeccCCcccccCccccCCcceecccccceeEEEeecCcc-ccCCCcceEEEEEecCCchhhhheec
Confidence 9999999988888765432111 110 12343333 222222
Q ss_pred ----CceEEecccccCCEEEEEEEEcCCcceeEEEEEEeecCCCCCceecCCCCCCCCCCCCCcEEEEeeCCeEEEEeCC
Q psy15127 357 ----LRRIACDLRETDSGLYTCTASSESGETSWSASLSVEPRPGPHAVHRMPDSGLFPGPPAAPVILNTTRGSVTLGWGE 432 (633)
Q Consensus 357 ----~~~~i~~~~~~d~g~y~c~a~n~~g~~~~~~~l~v~~~p~~~~~~~~~~~~~~p~~p~~~~~~~~~~~~i~l~W~~ 432 (633)
....+.++.....|.++|.|.|..|....+..|.|...|.. |..+.....+...+.+.|++
T Consensus 479 ss~g~~~tv~nl~p~t~Y~~rv~A~n~~g~g~sS~pLkV~t~pEg---------------p~~~~a~ats~~ti~v~Wep 543 (1381)
T KOG4221|consen 479 SSPGIQVTVQNLSPLTMYFFRVRAKNEAGSGESSAPLKVTTQPEG---------------PVQLQAYATSPTTILVTWEP 543 (1381)
T ss_pred cCCceEEEeeecccceeEEEEEeccCcccCCccCCceEEecCCCC---------------CccccccccCcceEEEEecC
Confidence 22267788888888999999999999999999999876553 33377778889999999999
Q ss_pred CCCCCCCCcceeEEEEEEEEecCCCCeEEEEEeeeeceEEEecCCCCCeEEEEEEEEeccccCCCCCCCCceeecCCCCC
Q psy15127 433 PEPRGGGVAPVIGYTVEYFSSDLQTGWVVAAHRITSTSITVSDLKPDTSYMFIVRAENSHGLGIPSPVSPITRTLGLNSL 512 (633)
Q Consensus 433 ~~~~~~~~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~~~Y~~~v~a~n~~G~g~~s~~~~~~~t~~~~p~ 512 (633)
|... +++|++|.+.|...+. +.|.. .+.+.+.++|.+|++++.|.|+|.|.|++|.|..|... .+.|+.+.|+
T Consensus 544 P~~~---n~~I~~yk~~ys~~~~-~~~~~--~~~n~~e~ti~gL~k~TeY~~~vvA~N~~G~g~sS~~i-~V~Tlsd~Ps 616 (1381)
T KOG4221|consen 544 PPFG---NGPITGYKLFYSEDDT-GKELR--VENNATEYTINGLEKYTEYSIRVVAYNSAGSGVSSADI-TVRTLSDVPS 616 (1381)
T ss_pred CCCC---CCCceEEEEEEEcCCC-CceEE--EecCccEEEeecCCCccceEEEEEEecCCCCCCCCCce-EEEeccCCCC
Confidence 9854 6899999999987743 44442 45567899999999999999999999999999988777 6899999999
Q ss_pred CCcchHHHHHHHhCCceEEeeeeeecccceEEEEEEEecCCCcccccchhhhhcceeEEEEEEcCCCcccceeeeeeccc
Q psy15127 513 VPQHLLDEARARLGTKVVNLRELIPTASTAVRITWEVSWGSVPQHLLDEARARLGTKVVNLRELIPTASTAVRITWEKYN 592 (633)
Q Consensus 513 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~si~v~W~~p~~~~p~~~~~~~~~i~~y~~i~~~~~~~~~~~~~~~~w~~~~ 592 (633)
+||+.+ ++...++++|.|+|. ||.+...+|.+++| .|+|+......+ ++
T Consensus 617 aPP~Nl---------------~lev~sStsVrVsW~------pP~~~t~ng~itgY-kIRy~~~~~~~~---------~~ 665 (1381)
T KOG4221|consen 617 APPQNL---------------SLEVVSSTSVRVSWL------PPPSETQNGQITGY-KIRYRKLSREDE---------VN 665 (1381)
T ss_pred CCCcce---------------EEEecCCCeEEEEcc------CCCcccccceEEEE-EEEecccCcccc---------cc
Confidence 999854 899999999999999 45557789999999 999998766541 11
Q ss_pred eeEeecCCccceEEeeccccceeEEEEEeccccccccccCC
Q psy15127 593 MATVMNAATTTSYTVTHLRKFTKYEFFLVPFFKTVEGARLD 633 (633)
Q Consensus 593 ~~~~~~~~~~~~~~i~~L~~~t~Y~~~v~a~n~~g~g~~s~ 633 (633)
...+.++.+.|++.+|+|++.|+|+|.|.|..|.|++|+
T Consensus 666 --~t~v~~n~~~~l~~~Lep~T~Y~vrIsa~t~nGtGpaS~ 704 (1381)
T KOG4221|consen 666 --ETVVKGNTTQYLFNGLEPNTQYRVRISAMTVNGTGPASE 704 (1381)
T ss_pred --eeecccchhhhHhhcCCCCceEEEEEEEeccCCCCCccc
Confidence 222345788999999999999999999999999999996
No 3
>KOG3513|consensus
Probab=100.00 E-value=2.9e-50 Score=420.46 Aligned_cols=546 Identities=22% Similarity=0.280 Sum_probs=398.0
Q ss_pred EeeCceEEEcCCCC--CCeEEEEEEe------------cCcCCeeeeCCCceEEEcCCeEEEEEEEeccCCCeEEEEeCC
Q psy15127 44 SIFGSVLGARGALS--DDQWKLIAKE------------ALIKPFPISEPSDATVLSGSVVEFVCRVGGDPLPTILWRRDD 109 (633)
Q Consensus 44 ~~~~~~L~i~~v~~--~G~Y~C~a~~------------v~~~p~~~~~~~~~~~~~G~~~~L~C~~~~~p~p~i~W~~~~ 109 (633)
...+++|.|.+++. +|.|+|.|.| +..+|.++..+.+..+..|++++|.|.+.|.|.|.|+|++||
T Consensus 290 ~~~~~vL~I~nv~~~D~G~Y~C~AeN~~G~~~~~~~v~v~a~P~w~~~~~d~~~~~gs~v~~eC~a~g~P~p~v~WlkNg 369 (1051)
T KOG3513|consen 290 SNYGKVLKIPNVQYEDAGEYECIAENSRGSATHSGHVTVYAPPYWLQKPQDTEADTGSNVTLECKASGKPNPTVKWLKNG 369 (1051)
T ss_pred eccccEEEecccCcCCCeEEEEEEecccccceeeEEEEEecCchhhcccceeEecCCCCeEEEEEecCCCCCceEEeeCC
Confidence 46678999999998 9999999999 678899999999999999999999999999999999999999
Q ss_pred ccCCCCCe---EEcccceEEEccCCCCCCeEEEEEEEeCCceEEEEEEEEEEeeccccccCCCce--EEecCCcEEEEEe
Q psy15127 110 GKMPTGRA---KILDDRSLQIENVGPQDEGLYICDVENLVGSISLRASLTVHLLRDDFRAEPKDT--RVASGETALLECG 184 (633)
Q Consensus 110 ~~i~~~~~---~~~~~~~L~i~~v~~~d~G~Y~C~~~n~~g~~s~~~~l~V~~~~p~~~~~~~~~--~~~~g~~~~l~C~ 184 (633)
.++..... ....++.|+|.+|+.+|+|.|+|.|+|.+|...+.+.|.|....|.+...|... .+..|.++.|.|.
T Consensus 370 ~pl~~~~r~~~~~i~~g~L~is~v~~~dsg~YQC~A~Nk~G~i~anA~L~V~a~~P~f~~~p~~~~~~a~~g~~v~i~C~ 449 (1051)
T KOG3513|consen 370 EPLEPAERDPRYKIDDGTLIISNVQESDSGVYQCIAENKYGTIYANAELKVLASAPVFPLNPVERKVMAVVGGTVTIDCK 449 (1051)
T ss_pred eecCccCCCcceEEeCCEEEEEecccccCeEEEeeeecccceEeeeeEEEEEccCCCCCCCccceEEEEEeCCeEEEeec
Confidence 99975443 666788999999999999999999999999999999999999888888888766 6678999999999
Q ss_pred CCCCCCCCeEEEEECCEEeccCCCeeEEeccceeeeEEEe----eeEEEEeecCCCCCCcc---c------ccccceeEE
Q psy15127 185 PPKGQPEPTLHWKKNGQFIDLESSKSLDLSRRTLGWLRVR----PLYWNVARPRANLNPRY---I------GRKMASLLI 251 (633)
Q Consensus 185 ~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~----g~y~C~a~~~~~~~p~~---~------~~~~~~~~~ 251 (633)
..+.|.+.+.|.++++ ............+++|.+.+++ |.|+|.|.|..+..... . +........
T Consensus 450 -~~asP~p~~~W~k~~~-~~~~~~r~~i~edGtL~I~n~t~~DaG~YtC~A~N~~G~a~~~~~L~Vkd~tri~~~P~~~~ 527 (1051)
T KOG3513|consen 450 -PFASPKPKVSWLKGGE-KLLQSGRIRILEDGTLEISNVTRSDAGKYTCVAENKLGKAESTGNLIVKDATRITLAPSNTD 527 (1051)
T ss_pred -cCCCCcceEEEEcCCc-ccccCceEEECCCCcEEecccCcccCcEEEEEEEcccCccceEEEEEEecCceEEeccchhh
Confidence 7999999999999998 5555666666678888877654 89999999998843211 1 111344455
Q ss_pred ecCCceEEEEEEEeeecC--CeeEEEECCEEEEeccCCcc-ceEEEccCceEEEcCCCCCCCeEEEEEEEeCCceeEEEE
Q psy15127 252 WNHPRVNRLSCFAEGSPL--PSVFWTQEGSQVLMFPGNAY-GHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRA 328 (633)
Q Consensus 252 ~~~g~~~~l~C~~~g~p~--~~v~W~~~g~~~~~~~~~~~-~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~ 328 (633)
+..|+.+.|.|.+..++. ..|.|.+||..+........ .+......+.|+|.+++..|+|.|+|+|.....+.+..+
T Consensus 528 v~~g~~v~l~Ce~shD~~ld~~f~W~~nG~~id~~~~~~~~~~~~~~~~g~L~i~nv~l~~~G~Y~C~aqT~~Ds~s~~A 607 (1051)
T KOG3513|consen 528 VKVGESVTLTCEASHDPSLDITFTWKKNGRPIDFNPDGDHFEINDGSDSGRLTIANVSLEDSGKYTCVAQTALDSASARA 607 (1051)
T ss_pred hccCceEEEEeecccCCCcceEEEEEECCEEhhccCCCCceEEeCCcCccceEEEeeccccCceEEEEEEEeecchhccc
Confidence 667899999999988777 47899999998765443221 122122235699999999999999999999888999999
Q ss_pred EEEEEecccCCCc-----------eEEeCCCcccc-----------------------------CCCCCceEEecccccC
Q psy15127 329 FLQVREFCVLPKG-----------TFTLGQPNLAT-----------------------------GNSDLRRIACDLRETD 368 (633)
Q Consensus 329 ~l~v~~~~~~p~p-----------~~~~~~~~~~~-----------------------------g~p~~~~~i~~~~~~d 368 (633)
.+.|+..+..|+- .+.|.+...-. |+ .+-.+.+|.+..
T Consensus 608 ~l~V~gpPgpP~~v~~~~i~~t~~~lsW~~g~dn~SpI~~Y~iq~rt~~~~~W~~v~~vp~~~~~~--~sa~vv~L~Pwv 685 (1051)
T KOG3513|consen 608 DLLVRGPPGPPPDVHVDDISDTTARLSWSPGSDNNSPIEKYTIQFRTPFPGKWKAVTTVPGNITGD--ESATVVNLSPWV 685 (1051)
T ss_pred ceEEecCCCCCCceeEeeeccceEEEEeecCCCCCCCceEEeEEecCCCCCcceEeeECCCcccCc--cceeEEccCCCc
Confidence 9999988777652 23333222100 11 000122223333
Q ss_pred CEEEEEEEEcCCcce-----------------------------------------------------------------
Q psy15127 369 SGLYTCTASSESGET----------------------------------------------------------------- 383 (633)
Q Consensus 369 ~g~y~c~a~n~~g~~----------------------------------------------------------------- 383 (633)
.|.|++.|.|..|..
T Consensus 686 ~YeFRV~AvN~iG~gePS~pS~~~rT~ea~P~~~P~nv~g~g~~~~eLvItW~Pl~~~~qNG~gfgY~Vswr~~g~~~~W 765 (1051)
T KOG3513|consen 686 EYEFRVVAVNSIGIGEPSPPSEKVRTPEAAPSVNPSNVKGGGGSPTELVITWEPLPEEEQNGPGFGYRVSWRPQGADKEW 765 (1051)
T ss_pred ceEEEEEEEcccccCCCCCCccceecCCCCCccCCccccccCCCCceEEEEeccCCHHHccCCCceEEEEEEeCCCCccc
Confidence 333333333333221
Q ss_pred ------------------------eEEEEEEee----cCCCCCceecCCCCCCCCCCCCCcEEEEeeCCeEEEEeCCCCC
Q psy15127 384 ------------------------SWSASLSVE----PRPGPHAVHRMPDSGLFPGPPAAPVILNTTRGSVTLGWGEPEP 435 (633)
Q Consensus 384 ------------------------~~~~~l~v~----~~p~~~~~~~~~~~~~~p~~p~~~~~~~~~~~~i~l~W~~~~~ 435 (633)
-..+.+.+. .+|.+..+........++.+|..+.....+++.+.|+|+++..
T Consensus 766 ~~~~v~~~d~~~~V~~~~st~~~tpyevKVqa~N~~GeGp~s~~~v~~S~Ed~P~~ap~~~~~~~~s~s~~~v~W~~~~~ 845 (1051)
T KOG3513|consen 766 KEVIVSNQDQPRYVVSNESTEPFTPYEVKVQAINDQGEGPESQVTVGYSGEDEPPVAPTKLSAKPLSSSEVNLSWKPPLW 845 (1051)
T ss_pred ceeEecccCCceEEEcCCCCCCcceeEEEEEEecCCCCCCCCceEEEEcCCCCCCCCCccceeecccCceEEEEecCcCc
Confidence 111111111 1233333333444555678899999999999999999999975
Q ss_pred CCCCCcceeEEEEEEEEecCCC-CeEEEEEeeeeceEEEecCCCCCeEEEEEEEEeccccCCCCCCCCceeecCCCCCC-
Q psy15127 436 RGGGVAPVIGYTVEYFSSDLQT-GWVVAAHRITSTSITVSDLKPDTSYMFIVRAENSHGLGIPSPVSPITRTLGLNSLV- 513 (633)
Q Consensus 436 ~~~~~~~i~~Y~v~~~~~~~~~-~~~~~~~~~~~~~~~i~~L~p~~~Y~~~v~a~n~~G~g~~s~~~~~~~t~~~~p~~- 513 (633)
. ++.+++|+|+|+..+... .-.......+.+..+|+||++++.|.|.|+|.|++|.|+.|... ...|...+|+.
T Consensus 846 ~---nG~l~gY~v~Y~~~~~~~~~~~~~~i~~~~~~~~ltgL~~~T~Y~~~vrA~nsaG~Gp~s~~~-~~tt~k~pPs~~ 921 (1051)
T KOG3513|consen 846 D---NGKLTGYEVKYWKINEKEGSLSRVQIAGNRTSWRLTGLEPNTKYRFYVRAYTSAGGGPASSEE-NVTTKKAPPSQV 921 (1051)
T ss_pred c---CCccceeEEEEEEcCCCcccccceeecCCcceEeeeCCCCCceEEEEEEEecCCCCCCCccce-eccccCCCCccc
Confidence 4 589999999999876542 22222334567889999999999999999999999999988765 35677777775
Q ss_pred ---CcchHHHHHHHhCCceEEeeeeeecccceEEEEEEEecCCCcccccchhhhhcceeEEEEEEcCCCcccceeeeeec
Q psy15127 514 ---PQHLLDEARARLGTKVVNLRELIPTASTAVRITWEVSWGSVPQHLLDEARARLGTKVVNLRELIPTASTAVRITWEK 590 (633)
Q Consensus 514 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~si~v~W~~p~~~~p~~~~~~~~~i~~y~~i~~~~~~~~~~~~~~~~w~~ 590 (633)
|+-. .+...+...+.|.|+. .........+.|| .|.|++...... |
T Consensus 922 ~~~p~g~----------------~~~~~~~~~~~l~w~~------v~~~~nes~v~gY-kV~~~~~~~~~~------~-- 970 (1051)
T KOG3513|consen 922 DIAPPGN----------------FIWKFSASILLLLWLL------VSAFENESEVGGY-KVLYREDLQNDI------E-- 970 (1051)
T ss_pred ccCCCcc----------------eEEeeeeeEEEEEEee------EEEEeecccCcce-EEEEeecccCCc------e--
Confidence 4433 4667788999999993 2233345569999 888888777651 1
Q ss_pred cceeEeecCCccceEEeeccccceeEEEEEeccccccccccCC
Q psy15127 591 YNMATVMNAATTTSYTVTHLRKFTKYEFFLVPFFKTVEGARLD 633 (633)
Q Consensus 591 ~~~~~~~~~~~~~~~~i~~L~~~t~Y~~~v~a~n~~g~g~~s~ 633 (633)
.. ..... ....-...++ .-.|.+.|++....|.|..|+
T Consensus 971 ~~--~t~~~-~~~~~~p~~~--~~~y~i~v~~~~~ggdg~~s~ 1008 (1051)
T KOG3513|consen 971 II--LTMKL-DAEFPEPSDL--DGKYDIKVRGYSPGGDGTISE 1008 (1051)
T ss_pred eE--ecccc-cccccCcccc--CCcceeEeccccCCCCCCcCC
Confidence 10 10000 0111122334 268999999999999997653
No 4
>KOG4221|consensus
Probab=100.00 E-value=2.7e-50 Score=417.19 Aligned_cols=549 Identities=19% Similarity=0.214 Sum_probs=394.5
Q ss_pred EEEecccCCCCCceEEeeCceEEEcCCCC--CCeEEEEEEe-------------c------CcCCeeeeCCCceEEEcCC
Q psy15127 29 VSISGDPGFDSRRSRSIFGSVLGARGALS--DDQWKLIAKE-------------A------LIKPFPISEPSDATVLSGS 87 (633)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~L~i~~v~~--~G~Y~C~a~~-------------v------~~~p~~~~~~~~~~~~~G~ 87 (633)
|+-+..|.....|+.+..+|.|.|.++++ .|.|+|.+++ + ...-.|...|....+.+|+
T Consensus 174 w~kn~~pl~~~~r~i~lpsG~L~I~~~qp~d~g~yrc~vt~g~~~r~S~~a~ltv~s~~~~~~~~~fl~~p~~~~v~~g~ 253 (1381)
T KOG4221|consen 174 WLKNDQPLPLDSRVIVLPSGALEISGLQPSDTGEYRCVVTGGASQRTSNEAELTVLSDPGALNKLVFLDEPSNAVVVEGD 253 (1381)
T ss_pred EecccccccCCCcEEEcCCCcEEecccccCCCceEEEEEecCCcCCccceeEEEecCCcccccceeeecCCCccccccCC
Confidence 44444455555688889999999999999 9999999999 2 2233577889999999999
Q ss_pred eEEEEEEEeccCCCeEEEEeCCccCCCC--CeEEcccceEEEccCCCCCCeEEEEEEEeCCceEEEEEEEEEEeeccccc
Q psy15127 88 VVEFVCRVGGDPLPTILWRRDDGKMPTG--RAKILDDRSLQIENVGPQDEGLYICDVENLVGSISLRASLTVHLLRDDFR 165 (633)
Q Consensus 88 ~~~L~C~~~~~p~p~i~W~~~~~~i~~~--~~~~~~~~~L~i~~v~~~d~G~Y~C~~~n~~g~~s~~~~l~V~~~~p~~~ 165 (633)
.+.|.|.+.+.|.|+|.|.||+..|.-+ +......+.|.|.+++..|+|.|+|+|.|......+.++|+|..+ |.+.
T Consensus 254 ~v~leCvvs~~p~p~v~Wlrng~~i~~ds~rivl~g~~slliS~a~~~dSg~YtC~Atn~~D~idasaev~V~a~-P~~~ 332 (1381)
T KOG4221|consen 254 DVVLECVVSGVPKPSVKWLRNGEKISVDSYRIVLVGGSSLLISNATDDDSGKYTCRATNTNDSIDASAEVTVLAP-PGFT 332 (1381)
T ss_pred cEEEEEEecCCCCCceEEeeCCeeeeecceEEEEecccceEEeccccccCceEEEEecCCCcccccceEEEEEcC-CCCC
Confidence 9999999999999999999999988655 444455778999999999999999999997777888899999999 9999
Q ss_pred cCCCceEEecCCcEEEEEeCCCCCCCCeEEEEECCEEeccCCCeeEEeccceeeeEEE----eeeEEEEeecCCCCCCcc
Q psy15127 166 AEPKDTRVASGETALLECGPPKGQPEPTLHWKKNGQFIDLESSKSLDLSRRTLGWLRV----RPLYWNVARPRANLNPRY 241 (633)
Q Consensus 166 ~~~~~~~~~~g~~~~l~C~~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~----~g~y~C~a~~~~~~~p~~ 241 (633)
..|......++.++.|.|. ..|.|.+.+.|+|||..+...+...+..... +.++.+ .+.|+|.+.|.++.....
T Consensus 333 ~~p~~l~A~e~~die~ec~-~~g~p~p~v~w~kNgd~~ipsdy~ki~~~~~-lrIlgi~~sdeg~yQcvaen~~G~a~a~ 410 (1381)
T KOG4221|consen 333 KAPTTLVAHESMDIEFECP-VSGKPIPTVRWYKNGDRIIPSDYFKIVGGGN-LRILGIVKSDEGFYQCVAENDAGSAQAA 410 (1381)
T ss_pred CCCcceeeeeccceeEeCC-CCCCCcceEEEEecCcccCcccceEecCCCC-cEEEEEecccchhhhhhhccCcccccch
Confidence 9999999999999999999 6888999999999999888755544443332 444433 478999999988743111
Q ss_pred c---------------ccccceeEEecCCceEEEEEEEe-----eecCCeeEEEECCEEEEeccCCccceEEEccCceEE
Q psy15127 242 I---------------GRKMASLLIWNHPRVNRLSCFAE-----GSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLR 301 (633)
Q Consensus 242 ~---------------~~~~~~~~~~~~g~~~~l~C~~~-----g~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~~~~l~ 301 (633)
. .......++...-...-+.|... +.+-+.++|++...... ....+.....+ +.
T Consensus 411 a~l~vv~~p~~~~s~~~~sap~~lv~~~~~srfi~~tw~~p~~~~g~i~~~~v~~~~~~~~-----rer~~~tss~g-~~ 484 (1381)
T KOG4221|consen 411 AQLEVVPQPASASSDLLPSAPRDLVANLVSSRFIQLTWRPPAQISGNISTYTVFYKVEGDV-----RERLQNTSSPG-IQ 484 (1381)
T ss_pred hhheeccCCcccccCccccCCcceecccccceeEEEeecCccccCCCcceEEEEEecCCch-----hhhheeccCCc-eE
Confidence 0 00011112222223334444433 33345677765322111 11111222223 44
Q ss_pred EcCCCCCCCeEEEEE--EEeCCceeEEEEEEEEEecccCCCc-----------eEEeCCCcccc------------C---
Q psy15127 302 IQGVQKEDAGFFVCS--ALSVAGSTTVRAFLQVREFCVLPKG-----------TFTLGQPNLAT------------G--- 353 (633)
Q Consensus 302 i~~~~~~d~G~Y~C~--a~n~~g~~~~~~~l~v~~~~~~p~p-----------~~~~~~~~~~~------------g--- 353 (633)
+...+....+.|.|+ |.|..|....++.|.|...+..|.. .+.|.+....+ +
T Consensus 485 ~tv~nl~p~t~Y~~rv~A~n~~g~g~sS~pLkV~t~pEgp~~~~a~ats~~ti~v~WepP~~~n~~I~~yk~~ys~~~~~ 564 (1381)
T KOG4221|consen 485 VTVQNLSPLTMYFFRVRAKNEAGSGESSAPLKVTTQPEGPVQLQAYATSPTTILVTWEPPPFGNGPITGYKLFYSEDDTG 564 (1381)
T ss_pred EEeeecccceeEEEEEeccCcccCCccCCceEEecCCCCCccccccccCcceEEEEecCCCCCCCCceEEEEEEEcCCCC
Confidence 444445556666655 5788899999999999865532221 23444443211 1
Q ss_pred ------CCCCceEEecccccCCEEEEEEEEcCCcceeEEEEEEeecCCCCCceecCCCCCCCCC-CCCCcEEEEeeCCeE
Q psy15127 354 ------NSDLRRIACDLRETDSGLYTCTASSESGETSWSASLSVEPRPGPHAVHRMPDSGLFPG-PPAAPVILNTTRGSV 426 (633)
Q Consensus 354 ------~p~~~~~i~~~~~~d~g~y~c~a~n~~g~~~~~~~l~v~~~p~~~~~~~~~~~~~~p~-~p~~~~~~~~~~~~i 426 (633)
+...+++|.++...+.|.|+|+|.|..|....+..+.|...... |+ ||.++++...+++++
T Consensus 565 ~~~~~~~n~~e~ti~gL~k~TeY~~~vvA~N~~G~g~sS~~i~V~Tlsd~------------PsaPP~Nl~lev~sStsV 632 (1381)
T KOG4221|consen 565 KELRVENNATEYTINGLEKYTEYSIRVVAYNSAGSGVSSADITVRTLSDV------------PSAPPQNLSLEVVSSTSV 632 (1381)
T ss_pred ceEEEecCccEEEeecCCCccceEEEEEEecCCCCCCCCCceEEEeccCC------------CCCCCcceEEEecCCCeE
Confidence 12244589999999999999999999998877777776643222 33 455589999999999
Q ss_pred EEEeCCCCCCCCCCcceeEEEEEEEEecCCCCeEEEEEeeeeceEEEecCCCCCeEEEEEEEEeccccCCCCCCCCceee
Q psy15127 427 TLGWGEPEPRGGGVAPVIGYTVEYFSSDLQTGWVVAAHRITSTSITVSDLKPDTSYMFIVRAENSHGLGIPSPVSPITRT 506 (633)
Q Consensus 427 ~l~W~~~~~~~~~~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~~~Y~~~v~a~n~~G~g~~s~~~~~~~t 506 (633)
.|+|.+|..... ++.+.+|.++|+......+.+......+..++++.+|+|++.|.|+|.|.|..|.|++|.+.. +.|
T Consensus 633 rVsW~pP~~~t~-ng~itgYkIRy~~~~~~~~~~~t~v~~n~~~~l~~~Lep~T~Y~vrIsa~t~nGtGpaS~w~~-aeT 710 (1381)
T KOG4221|consen 633 RVSWLPPPSETQ-NGQITGYKIRYRKLSREDEVNETVVKGNTTQYLFNGLEPNTQYRVRISAMTVNGTGPASEWVS-AET 710 (1381)
T ss_pred EEEccCCCcccc-cceEEEEEEEecccCcccccceeecccchhhhHhhcCCCCceEEEEEEEeccCCCCCccccee-ccC
Confidence 999999988765 478999999999664333332223344678899999999999999999999999999999984 666
Q ss_pred cCCCCCCCcchHHHHHHHhCCceEEeeeeeecccceEEEEEEEecCCCcccccchhhhhcceeEEEEEEcCCCcccceee
Q psy15127 507 LGLNSLVPQHLLDEARARLGTKVVNLRELIPTASTAVRITWEVSWGSVPQHLLDEARARLGTKVVNLRELIPTASTAVRI 586 (633)
Q Consensus 507 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~si~v~W~~p~~~~p~~~~~~~~~i~~y~~i~~~~~~~~~~~~~~~ 586 (633)
.+..+..+-.. +... -......++|.+.|.|| .+.+-.+.|| .|.|+.-.+..
T Consensus 711 ~~~d~~e~vp~----------~ps~--l~~~~g~~si~vsW~Pp--------~~~~~~vrgY-~ig~r~g~~~p------ 763 (1381)
T KOG4221|consen 711 PESDLDERVPG----------KPSE--LHVHPGSNSIVVSWTPP--------PHPNIVVRGY-KIGYRPGSGIP------ 763 (1381)
T ss_pred ccccccccCCC----------CCce--eeeccCceeEEEEeCCC--------CChhhhhcce-EEeeecccCCC------
Confidence 55433321100 0000 01223468999999976 5677899999 99997322211
Q ss_pred eeeccceeEeecCCccceEEeeccccceeEEEEEeccccccccccC
Q psy15127 587 TWEKYNMATVMNAATTTSYTVTHLRKFTKYEFFLVPFFKTVEGARL 632 (633)
Q Consensus 587 ~w~~~~~~~~~~~~~~~~~~i~~L~~~t~Y~~~v~a~n~~g~g~~s 632 (633)
...++.++....+|.|..|.++.-|.|+++|+|+.|+|.|+
T Consensus 764 -----~~~tIrl~~~~s~y~l~~Le~~~~YvVkL~AfNn~gdG~p~ 804 (1381)
T KOG4221|consen 764 -----DTGTIRLDEKVSYYNLEQLEPNRDYVVKLRAFNNHGDGNPI 804 (1381)
T ss_pred -----CCccEEecceeeEEEEEecccCceEEEEEEEeccCCCCcce
Confidence 23466777889999999999999999999999999999874
No 5
>KOG4222|consensus
Probab=100.00 E-value=6.1e-50 Score=412.30 Aligned_cols=588 Identities=30% Similarity=0.477 Sum_probs=463.3
Q ss_pred CCCCCCccccccceeeEEEEecccCCCCCceEEeeCceEEEcCC-CC------CCeEEEEEEe--------------cCc
Q psy15127 12 PMSSPRAEIEPATRTNRVSISGDPGFDSRRSRSIFGSVLGARGA-LS------DDQWKLIAKE--------------ALI 70 (633)
Q Consensus 12 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v-~~------~G~Y~C~a~~--------------v~~ 70 (633)
-.+.|++.|+|+...... ..+ .+.+.|+.+ .+|.|.+..+ .. .|.|+|.|.| ...
T Consensus 55 asG~ppPti~w~k~G~~~-~~~--e~~shR~~l-p~gsLf~l~~ahg~~a~~d~G~y~cvasn~~g~avSr~a~L~vavl 130 (1281)
T KOG4222|consen 55 ASGDPPPTIEWYKDGENV-FKG--EPGSHRFLL-PDGSLFLLRLAHGKKAGHDHGVYSCVASNRLGEAVSRGASLIVAVL 130 (1281)
T ss_pred CCCCCCCceecccCCccc-CCC--CCCCcceec-CCccEEEEecccCCcccCCCceeEeeecCccceeeecCceEEEEEe
Confidence 345578999977655422 122 134456644 4455544432 22 7999999999 112
Q ss_pred CCeeeeCCCceEEEcCCeEEEEEEE-eccCCCeEEEEeCCccCC--C-CCeEEcccceEEEccCCCCCCeEEEEEEEeCC
Q psy15127 71 KPFPISEPSDATVLSGSVVEFVCRV-GGDPLPTILWRRDDGKMP--T-GRAKILDDRSLQIENVGPQDEGLYICDVENLV 146 (633)
Q Consensus 71 ~p~~~~~~~~~~~~~G~~~~L~C~~-~~~p~p~i~W~~~~~~i~--~-~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~n~~ 146 (633)
+--|...|..+.+..|+.+.|.|.- .|+|.|.+.|.|+|.++. . .++....++.|.|.+++++|+|.|.|++.|-.
T Consensus 131 rddfrv~prd~~~a~ge~avlEcgpP~ghpeptvSw~Kdg~pl~~~~~~~~~lisgG~LlIsnvrksD~GtY~CVatNmv 210 (1281)
T KOG4222|consen 131 RDDFRVSPRDVQAAVGEEAVLECGPPRGHPEPTVSWVKDGKPLDHYDVPIIALISGGNLLISNVRKSDEGTYACVATNMV 210 (1281)
T ss_pred chhcccCcccccccccceeEEeccCCCCCCCCcceeecCCCccccccceeEEEecCCcEEEeccccCCCceeeeeecccc
Confidence 2345677888889999999999986 588999999999999886 2 34556678899999999999999999999999
Q ss_pred ce-EEEEEEEEEEeeccccccCCCceEEecCCcEEEEEeCCCCCCCCeEEEEECCEEeccCCCeeEEeccceeeeEEE--
Q psy15127 147 GS-ISLRASLTVHLLRDDFRAEPKDTRVASGETALLECGPPKGQPEPTLHWKKNGQFIDLESSKSLDLSRRTLGWLRV-- 223 (633)
Q Consensus 147 g~-~s~~~~l~V~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 223 (633)
|. .+..++|.|.+. |.+...+.+..+..|..+.+.|. ..|.|.+++.|.+++..+..... .+.....++.+..+
T Consensus 211 G~ReS~~A~lsv~e~-P~f~~rp~~~~v~~g~~~~f~c~-v~GdP~P~Vrwkk~~~~~P~~ry-~i~~d~qtl~i~r~tp 287 (1281)
T KOG4222|consen 211 GERESIPARLSVQEK-PWFWKRPKDLAVLVGAAAEFDCR-VGGDPQPTVRWKKDDPSLPRSRY-SILDDTQTLRIDRVTP 287 (1281)
T ss_pred cccccccceeeeccC-Cccccccccceeecccccccccc-cCCCCCCceeeeccCCCCCccce-eeeeccccccccccCC
Confidence 88 578889999999 99999999999999999999999 79999999999997766553221 12222233333333
Q ss_pred --eeeEEEEeecCCCC-----------CCcccccccceeEEecCCceEEEEEEEeeecCCeeEEEECCEEEEec---cCC
Q psy15127 224 --RPLYWNVARPRANL-----------NPRYIGRKMASLLIWNHPRVNRLSCFAEGSPLPSVFWTQEGSQVLMF---PGN 287 (633)
Q Consensus 224 --~g~y~C~a~~~~~~-----------~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~v~W~~~g~~~~~~---~~~ 287 (633)
.|.|.|.+.|.++. +|.+...... -.+..|..++|.|.+.|+|+|.+.|.+.|....++ +..
T Consensus 288 ~deg~y~C~a~n~vG~l~asa~ltV~apP~f~kkp~d--q~v~lg~~vt~pc~~~gnP~PavfW~keg~q~llf~~~p~~ 365 (1281)
T KOG4222|consen 288 TDEGTYVCPAENLVGGLEASATLTVQAPPSFGKKPRD--QKVALGGTVTFPCETLGNPPPAVFWLKEGSQDLLFSASPPS 365 (1281)
T ss_pred CcccceeeeccccccccccccceEEecCcccccccCc--cccccCceEEeeeecCCCCCcceEEeccCcceecccCCCCC
Confidence 47999999998763 2222222222 22345689999999999999999999998866555 344
Q ss_pred ccceEEEccCceEEEcCCCCCCCeEEEEEEEeCCceeEEEEEEEEEec-cc-CCCceEEeCCCccc-------------c
Q psy15127 288 AYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVREF-CV-LPKGTFTLGQPNLA-------------T 352 (633)
Q Consensus 288 ~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~-~~-~p~p~~~~~~~~~~-------------~ 352 (633)
...+.++...++|.|.++...|.|.|.|...+..|.......+.+.+. .. .|+|++..++.+.+ .
T Consensus 366 ~~~r~svs~~g~L~it~v~~~d~g~Yvcq~~~~~~ss~~~a~~~qt~~~~~~rPpp~i~~g~~nQtl~v~s~a~l~c~at 445 (1281)
T KOG4222|consen 366 SNGRGSVSPTGTLTITNVRQSDEGYYVCQTQTSAGSSLTKAYLEQTDVLTDSRPPPIIEQGPANQTLPVGSTASLPCSAT 445 (1281)
T ss_pred cCccceecCCCCcccccccccccceEeecccccccccccceeEEEEeeeccCCCCceeeecccccccccCcccccChhhh
Confidence 556778888889999999999999999999888888766666555543 23 67788777766642 2
Q ss_pred CCCCCc------------------------eEEecccccCCEEEEEEEEcCCcceeEEEEEEeecCCCCCceecCCCCCC
Q psy15127 353 GNSDLR------------------------RIACDLRETDSGLYTCTASSESGETSWSASLSVEPRPGPHAVHRMPDSGL 408 (633)
Q Consensus 353 g~p~~~------------------------~~i~~~~~~d~g~y~c~a~n~~g~~~~~~~l~v~~~p~~~~~~~~~~~~~ 408 (633)
|.|... +.+.++...|.|.|+|.|.+..|+...++.|.|.+.-......+..+++.
T Consensus 446 g~P~p~i~wl~dg~~v~~~d~~~s~~~~~~l~i~dl~~~DtG~YTc~as~~~ges~wSatl~v~~~~~s~q~~r~~D~S~ 525 (1281)
T KOG4222|consen 446 GAPTPNISWLKDGCNVMNPDSRISQQEIGSLRIRDLKGPDTGRYTCIASDESGESTWSATLTVEKAGSSQQFCRCEDPSA 525 (1281)
T ss_pred CCCCCCchhhhcccccccCCcccceeeeceeeeeeeecCCCcceeeeccCcccccccceeeEhhhcCcccccccCCChhh
Confidence 444322 27788899999999999999999999999999998766666788889999
Q ss_pred CCCCCCCcEEEEeeCCeEEEEeCCCCCCCCCCcceeEEEEEEEEecCCCCeEEEEEeeeeceEEEecCCCCCeEEEEEEE
Q psy15127 409 FPGPPAAPVILNTTRGSVTLGWGEPEPRGGGVAPVIGYTVEYFSSDLQTGWVVAAHRITSTSITVSDLKPDTSYMFIVRA 488 (633)
Q Consensus 409 ~p~~p~~~~~~~~~~~~i~l~W~~~~~~~~~~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~~~Y~~~v~a 488 (633)
+|++|..+....+..+++.|+|.+....+ ..++.+|.+++...+..+.|+.....+..+.+.|.+|+|+..|.|.|+|
T Consensus 526 ~pS~p~~p~v~~v~~~~v~LsW~~~s~sg--~vP~s~yiieafs~~~~etw~~ta~~v~~t~~~I~gL~P~~sylf~vRa 603 (1281)
T KOG4222|consen 526 LPSPPGTPGVVNVSRTSVTLSWQPTSPSG--AVPASGYIIEAFSPDLGETWQTTAGRVKTTTYAIRGLKPNLSYLFLVRA 603 (1281)
T ss_pred CCCCCCCCccccCCCceEEecccCCCCCC--ccccchhHHHHhhhhhcccccccccccccceeeecCcCccceeeeeeec
Confidence 99999999999999999999999998754 6799999999999888889998888888999999999999999999999
Q ss_pred EeccccCCCCCCCCceeecCCCCCCCcchHHHHHHHhCCceEEeeeeeecccceEEEEEEEecCCCcccccchhhhhcce
Q psy15127 489 ENSHGLGIPSPVSPITRTLGLNSLVPQHLLDEARARLGTKVVNLRELIPTASTAVRITWEVSWGSVPQHLLDEARARLGT 568 (633)
Q Consensus 489 ~n~~G~g~~s~~~~~~~t~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~si~v~W~~p~~~~p~~~~~~~~~i~~y 568 (633)
.|..|.+.++..+...+|....+......-...-.+..+..+.+.+...+++++|.+.|..+ ...+...|++|
T Consensus 604 ~n~~Gis~Ps~~S~~vrta~a~~~~a~ad~~k~~~~ls~~l~~l~~~~~L~asslr~~w~~~-------kq~~~~~i~g~ 676 (1281)
T KOG4222|consen 604 ENEQGISDPSTSSDPVRTAPADAAAAGADHQKVQRELSNELLRLSNPNVLNASSLRLGWTKD-------KQHGSQYIQGY 676 (1281)
T ss_pred cccccccCCcccCCccccCCCChhhhhhhHHHHHHhhcccceeeccccccchhheeeeeeee-------cccCcccccce
Confidence 99999999988777788877777776666666777777788888899999999999999965 34557899999
Q ss_pred eEEEEEEcCCCcccceeeeeeccceeEeecCCccceEEeeccccceeEEEEEecccccc
Q psy15127 569 KVVNLRELIPTASTAVRITWEKYNMATVMNAATTTSYTVTHLRKFTKYEFFLVPFFKTV 627 (633)
Q Consensus 569 ~~i~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~i~~L~~~t~Y~~~v~a~n~~g 627 (633)
+|.|+...... .+|..... ......++.+.+|+|++.|+|.++.+...|
T Consensus 677 -~I~~r~~~~~~-----a~~s~~~v----~~~t~~s~v~~nl~p~t~ye~f~~Pf~~~~ 725 (1281)
T KOG4222|consen 677 -RISYRSLGSQL-----AQWSNAGV----TVPTPESVVVPNLKPGTNYEFFVRPFFPHG 725 (1281)
T ss_pred -EEEeccCcccc-----ccccccce----eccCCcceeccccCCCccceeeccCccCCC
Confidence 99999987732 34543322 234578899999999999999999988844
No 6
>KOG4222|consensus
Probab=100.00 E-value=6.9e-44 Score=367.78 Aligned_cols=579 Identities=26% Similarity=0.370 Sum_probs=413.6
Q ss_pred CCCCCCCCccccccceeeEEEEecccCCCCCceEEeeCceEEEcCCCC--CCeEEEEEEe-------------cCcCCee
Q psy15127 10 AHPMSSPRAEIEPATRTNRVSISGDPGFDSRRSRSIFGSVLGARGALS--DDQWKLIAKE-------------ALIKPFP 74 (633)
Q Consensus 10 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~--~G~Y~C~a~~-------------v~~~p~~ 74 (633)
-=+..+|++.|.|+++...-. ..+..++.+.++|.|.|.+++. +|.|.|++.| ++.+|.|
T Consensus 154 gpP~ghpeptvSw~Kdg~pl~-----~~~~~~~~lisgG~LlIsnvrksD~GtY~CVatNmvG~ReS~~A~lsv~e~P~f 228 (1281)
T KOG4222|consen 154 GPPRGHPEPTVSWVKDGKPLD-----HYDVPIIALISGGNLLISNVRKSDEGTYACVATNMVGERESIPARLSVQEKPWF 228 (1281)
T ss_pred cCCCCCCCCcceeecCCCccc-----cccceeEEEecCCcEEEeccccCCCceeeeeecccccccccccceeeeccCCcc
Confidence 345677899999555444222 2355677788899999999999 9999999999 7889999
Q ss_pred eeCCCceEEEcCCeEEEEEEEeccCCCeEEEEeCCccCCCCCeEEccc-ceEEEccCCCCCCeEEEEEEEeCCceEEEEE
Q psy15127 75 ISEPSDATVLSGSVVEFVCRVGGDPLPTILWRRDDGKMPTGRAKILDD-RSLQIENVGPQDEGLYICDVENLVGSISLRA 153 (633)
Q Consensus 75 ~~~~~~~~~~~G~~~~L~C~~~~~p~p~i~W~~~~~~i~~~~~~~~~~-~~L~i~~v~~~d~G~Y~C~~~n~~g~~s~~~ 153 (633)
...|....+.+|..+.+.|.+.|.|.|.+.|.|++..++..+..+..+ .+|.|.+++..|.|.|.|.+.|..|..++..
T Consensus 229 ~~rp~~~~v~~g~~~~f~c~v~GdP~P~Vrwkk~~~~~P~~ry~i~~d~qtl~i~r~tp~deg~y~C~a~n~vG~l~asa 308 (1281)
T KOG4222|consen 229 WKRPKDLAVLVGAAAEFDCRVGGDPQPTVRWKKDDPSLPRSRYSILDDTQTLRIDRVTPTDEGTYVCPAENLVGGLEASA 308 (1281)
T ss_pred ccccccceeecccccccccccCCCCCCceeeeccCCCCCccceeeeeccccccccccCCCcccceeeecccccccccccc
Confidence 999999999999999999999999999999999999999988888877 8999999999999999999999999999999
Q ss_pred EEEEEeeccccccCCCceEEecCCcEEEEEeCCCCCCCCeEEEEECCEEeccCC-------CeeEEeccceeeeEEEe--
Q psy15127 154 SLTVHLLRDDFRAEPKDTRVASGETALLECGPPKGQPEPTLHWKKNGQFIDLES-------SKSLDLSRRTLGWLRVR-- 224 (633)
Q Consensus 154 ~l~V~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~i~W~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~-- 224 (633)
.++|.++ |.+...+.+..+..|..++|.|. ..|+|.+.+.|.+.|...-... ..........+.+.++.
T Consensus 309 ~ltV~ap-P~f~kkp~dq~v~lg~~vt~pc~-~~gnP~PavfW~keg~q~llf~~~p~~~~~r~svs~~g~L~it~v~~~ 386 (1281)
T KOG4222|consen 309 TLTVQAP-PSFGKKPRDQKVALGGTVTFPCE-TLGNPPPAVFWLKEGSQDLLFSASPPSSNGRGSVSPTGTLTITNVRQS 386 (1281)
T ss_pred ceEEecC-cccccccCccccccCceEEeeee-cCCCCCcceEEeccCcceecccCCCCCcCccceecCCCCccccccccc
Confidence 9999999 99999999999999999999999 7999999999999876543221 11112222345554443
Q ss_pred --eeEEEEeecCCCCC----------------CcccccccceeEEecCCceEEEEEEEeeecCCeeEEEECCEEEEeccC
Q psy15127 225 --PLYWNVARPRANLN----------------PRYIGRKMASLLIWNHPRVNRLSCFAEGSPLPSVFWTQEGSQVLMFPG 286 (633)
Q Consensus 225 --g~y~C~a~~~~~~~----------------p~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~v~W~~~g~~~~~~~~ 286 (633)
|.|.|...+.++.. |.-.+......-....+..+.|.|.+.|.|.+.+.|.++|..+...
T Consensus 387 d~g~Yvcq~~~~~~ss~~~a~~~qt~~~~~~rPpp~i~~g~~nQtl~v~s~a~l~c~atg~P~p~i~wl~dg~~v~~~-- 464 (1281)
T KOG4222|consen 387 DEGYYVCQTQTSAGSSLTKAYLEQTDVLTDSRPPPIIEQGPANQTLPVGSTASLPCSATGAPTPNISWLKDGCNVMNP-- 464 (1281)
T ss_pred ccceEeecccccccccccceeEEEEeeeccCCCCceeeecccccccccCcccccChhhhCCCCCCchhhhcccccccC--
Confidence 68999866654421 1111111111222334688999999999999999999999876532
Q ss_pred CccceEEEccCceEEEcCCCCCCCeEEEEEEEeCCceeEEEEEEEEEecccC------------CCc-------------
Q psy15127 287 NAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVREFCVL------------PKG------------- 341 (633)
Q Consensus 287 ~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~~~~------------p~p------------- 341 (633)
..+......++|+|.+...-|.|.|+|.+.+..|....++.|.|.+.... |.+
T Consensus 465 --d~~~s~~~~~~l~i~dl~~~DtG~YTc~as~~~ges~wSatl~v~~~~~s~q~~r~~D~S~~pS~p~~p~v~~v~~~~ 542 (1281)
T KOG4222|consen 465 --DSRISQQEIGSLRIRDLKGPDTGRYTCIASDESGESTWSATLTVEKAGSSQQFCRCEDPSALPSPPGTPGVVNVSRTS 542 (1281)
T ss_pred --CcccceeeeceeeeeeeecCCCcceeeeccCcccccccceeeEhhhcCcccccccCCChhhCCCCCCCCccccCCCce
Confidence 24555556789999999999999999999999999999999998854222 110
Q ss_pred -eEEeCCCccccCCCC-------------------------CceEEecccccCCEEEEEEEEcCCcceeEEEE-EEeecC
Q psy15127 342 -TFTLGQPNLATGNSD-------------------------LRRIACDLRETDSGLYTCTASSESGETSWSAS-LSVEPR 394 (633)
Q Consensus 342 -~~~~~~~~~~~g~p~-------------------------~~~~i~~~~~~d~g~y~c~a~n~~g~~~~~~~-l~v~~~ 394 (633)
.+.|.+.....+-|. ..+.|..+....++.|.|+|.|..|-..-+.. =.|...
T Consensus 543 v~LsW~~~s~sg~vP~s~yiieafs~~~~etw~~ta~~v~~t~~~I~gL~P~~sylf~vRa~n~~Gis~Ps~~S~~vrta 622 (1281)
T KOG4222|consen 543 VTLSWQPTSPSGAVPASGYIIEAFSPDLGETWQTTAGRVKTTTYAIRGLKPNLSYLFLVRAENEQGISDPSTSSDPVRTA 622 (1281)
T ss_pred EEecccCCCCCCccccchhHHHHhhhhhcccccccccccccceeeecCcCccceeeeeeeccccccccCCcccCCccccC
Confidence 112222221111121 23389999999999999999999994311100 001111
Q ss_pred CCCCceecCCCCCC-CCCCCCCcE---EEEeeCCeEEEEeCCCCCCCCCCcceeEEEEEEEEecC-CCCeEEEEEee-ee
Q psy15127 395 PGPHAVHRMPDSGL-FPGPPAAPV---ILNTTRGSVTLGWGEPEPRGGGVAPVIGYTVEYFSSDL-QTGWVVAAHRI-TS 468 (633)
Q Consensus 395 p~~~~~~~~~~~~~-~p~~p~~~~---~~~~~~~~i~l~W~~~~~~~~~~~~i~~Y~v~~~~~~~-~~~~~~~~~~~-~~ 468 (633)
+............+ ....-..++ ....+++++.+.|..+...+ ...|.+|.|.|+..+. ...|....... ..
T Consensus 623 ~a~~~~a~ad~~k~~~~ls~~l~~l~~~~~L~asslr~~w~~~kq~~--~~~i~g~~I~~r~~~~~~a~~s~~~v~~~t~ 700 (1281)
T KOG4222|consen 623 PADAAAAGADHQKVQRELSNELLRLSNPNVLNASSLRLGWTKDKQHG--SQYIQGYRISYRSLGSQLAQWSNAGVTVPTP 700 (1281)
T ss_pred CCChhhhhhhHHHHHHhhcccceeeccccccchhheeeeeeeecccC--cccccceEEEeccCccccccccccceeccCC
Confidence 11000000000000 000000111 12346789999999988754 5679999999998765 33455443333 34
Q ss_pred ceEEEecCCCCCeEEEEEEEEeccc---cCCCCCCCCceeecCCCCCCCcchHHHHHHHhCCceEEeeeeeecccceEEE
Q psy15127 469 TSITVSDLKPDTSYMFIVRAENSHG---LGIPSPVSPITRTLGLNSLVPQHLLDEARARLGTKVVNLRELIPTASTAVRI 545 (633)
Q Consensus 469 ~~~~i~~L~p~~~Y~~~v~a~n~~G---~g~~s~~~~~~~t~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~si~v 545 (633)
..+.+.+|.|++.|+|.+..+...| .|.++... .+.|.+.+|+.|+..+. .+ +.-..+.+++.|
T Consensus 701 ~s~v~~nl~p~t~ye~f~~Pf~~~~~s~~g~pS~sk-~alt~e~~PSapp~~~~---------~~---s~~~~n~Ta~~V 767 (1281)
T KOG4222|consen 701 ESVVVPNLKPGTNYEFFVRPFFPHGYSIQGAPSNSK-TALTLEEPPSAPPQGVQ---------HV---SKGSYNGTAGSV 767 (1281)
T ss_pred cceeccccCCCccceeeccCccCCCcceecCCcccc-cccccccCCCCCCCCcc---------cc---ccccCCCceeeE
Confidence 6788999999999999999998844 56666665 47788888888887521 01 334457889999
Q ss_pred EEEEecCCCcccccchhhhhcceeEEEEEEcCCCcccceeeeeeccceeEeecCCccceEEeeccccceeEEEEEecccc
Q psy15127 546 TWEVSWGSVPQHLLDEARARLGTKVVNLRELIPTASTAVRITWEKYNMATVMNAATTTSYTVTHLRKFTKYEFFLVPFFK 625 (633)
Q Consensus 546 ~W~~p~~~~p~~~~~~~~~i~~y~~i~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~i~~L~~~t~Y~~~v~a~n~ 625 (633)
+|.+ +.....++.+++| .|..-.-.. .+++... ..+....+.+|.+|.+++.|+|+|.|+|.
T Consensus 768 sw~~------pp~d~~ng~~qg~-ki~~~~~e~----------tr~h~n~-t~~a~~~sv~i~~l~~g~ay~vtv~a~T~ 829 (1281)
T KOG4222|consen 768 SWAP------PPADVQNGILQGY-KIECSGGEK----------TRIHINK-TTNARTGSVTIGNLVTGIAYSVTVAARTG 829 (1281)
T ss_pred EecC------CcccccCCcccce-eEEeecCcc----------ccccccc-cccCCCCceEeccccccceEEEEEeeecC
Confidence 9994 3446789999999 444321110 1111111 13366789999999999999999999999
Q ss_pred ccccccC
Q psy15127 626 TVEGARL 632 (633)
Q Consensus 626 ~g~g~~s 632 (633)
+|+|+-|
T Consensus 830 aGvG~~s 836 (1281)
T KOG4222|consen 830 AGVGVKS 836 (1281)
T ss_pred CccCCCC
Confidence 9999854
No 7
>KOG4194|consensus
Probab=99.94 E-value=2.4e-25 Score=216.63 Aligned_cols=257 Identities=27% Similarity=0.456 Sum_probs=197.8
Q ss_pred CcCCeeeeCCCceEEEcCCeEEEEEEEec--cCCCeEEEEeCCccCCC------------CCeEEc-----ccceEEEcc
Q psy15127 69 LIKPFPISEPSDATVLSGSVVEFVCRVGG--DPLPTILWRRDDGKMPT------------GRAKIL-----DDRSLQIEN 129 (633)
Q Consensus 69 ~~~p~~~~~~~~~~~~~G~~~~L~C~~~~--~p~p~i~W~~~~~~i~~------------~~~~~~-----~~~~L~i~~ 129 (633)
..+|.|..+|..+.+..|+.++|+|.+.+ ..+..+.|+++++..+. .+.-.. -.+.|.+.|
T Consensus 501 spkpqI~~qPe~~~al~g~nirftC~a~sssasplsi~WR~dnevq~rv~ved~a~~~~q~r~~~~~e~~~~~~~L~L~n 580 (873)
T KOG4194|consen 501 SPKPQIVTQPETVSALIGENIRFTCNAYSSSASPLSIEWRKDNEVQPRVDVEDFATFLSQNRNGTFGEREEYTAILHLDN 580 (873)
T ss_pred CCCcceecCchHhhhhhccceEEEEEeccCCCCCceeEeeeccccCcccchhcchhhhhhhccCccchhhhhhheeeeee
Confidence 46789999999999999999999999975 33447999998874421 000000 124799999
Q ss_pred CCCCCCeEEEEEEEeCCce-EEEEEEEEEEeeccccccCCCceEEecCCcEEEEEeCCCCCCCCeEEEEECCEE-eccCC
Q psy15127 130 VGPQDEGLYICDVENLVGS-ISLRASLTVHLLRDDFRAEPKDTRVASGETALLECGPPKGQPEPTLHWKKNGQF-IDLES 207 (633)
Q Consensus 130 v~~~d~G~Y~C~~~n~~g~-~s~~~~l~V~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~i~W~~~~~~-~~~~~ 207 (633)
|+..|+|.|+|++.|.+|+ .+..++|+|... |.|...|.+..+..|+.+.|.|. +.|.|.|+|.|.++|.. .+...
T Consensus 581 Vt~td~grYQCVvtN~FGStysqk~KltV~~~-PsFtktP~dltl~tg~mArl~Ca-AtG~P~PeIawqkdggtdFPAA~ 658 (873)
T KOG4194|consen 581 VTFTDEGRYQCVVTNHFGSTYSQKAKLTVNQA-PSFTKTPEDLTLRTGQMARLECA-ATGHPRPEIAWQKDGGTDFPAAR 658 (873)
T ss_pred eecccCceEEEEEecccCcchhheeEEEeecc-CccccCcccceeecccceeeeee-ccCCCCcceeehhcCCCCCchhh
Confidence 9999999999999999998 689999999998 99999999999999999999999 79999999999998876 44433
Q ss_pred CeeEEec--cceeeeEEE----eeeEEEEeecCCCC-----------CCcccccccceeEEecCCceEEEEEEEeeecC-
Q psy15127 208 SKSLDLS--RRTLGWLRV----RPLYWNVARPRANL-----------NPRYIGRKMASLLIWNHPRVNRLSCFAEGSPL- 269 (633)
Q Consensus 208 ~~~~~~~--~~~~~~~~~----~g~y~C~a~~~~~~-----------~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~- 269 (633)
.+.+.+. ...+.+.++ .|.|+|.|.|.+|. .|.+..+.... .+..|+++.|.|.+.|.|.
T Consensus 659 eRRl~Vmpedd~f~Itnvk~eD~GiYtC~A~n~AG~isanAtL~V~e~p~f~~PL~~~--~V~~get~vlqC~a~~~~a~ 736 (873)
T KOG4194|consen 659 ERRLHVMPEDDVFFITNVKIEDQGIYTCTAQNVAGQISANATLTVLETPSFSIPLEDQ--LVVVGETLVLQCLAEGAPAD 736 (873)
T ss_pred hheeeecCCCCEEEEecccccccceeEEeeeccccceeeceEEEEecCCcccccccce--EEEecceEEEEEecCCCCCC
Confidence 3333322 233333333 48999999999883 24444443333 3445799999999999998
Q ss_pred CeeEEEECCEEEEeccCCccceEEEccCceEEEcCCCCCCCeEEEEEEEeCCceeEEEEEEEEE
Q psy15127 270 PSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVR 333 (633)
Q Consensus 270 ~~v~W~~~g~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~ 333 (633)
|.+.|+|+++++...+.. .....+.-|.+.+...+|+|.|+|+.+|..|.......+.+.
T Consensus 737 pr~~W~k~d~pil~t~rh----~f~d~dQllvv~~~~~~daG~yTcem~~~~~~~~~~i~l~~~ 796 (873)
T KOG4194|consen 737 PRLEWFKEDKPILITERH----TFPDGDQLLVVKENLVEDAGIYTCEMSNTLGTERIHICLLVY 796 (873)
T ss_pred ccccccCCCCceEEeecc----cCCCCCeEEEEEehhhhhcceEEEEEEeeccceeeEEEEEEe
Confidence 999999999988653321 122234468889999999999999999999987666655554
No 8
>PHA02785 IL-beta-binding protein; Provisional
Probab=99.93 E-value=1e-23 Score=206.83 Aligned_cols=239 Identities=18% Similarity=0.253 Sum_probs=164.6
Q ss_pred eEEEcCCeEEEEEEE-----eccCCCeEEEEeCCccCCCCCeEEcc-cceEEEccCCCCCCeEEEEEEEeCCceEEEEEE
Q psy15127 81 ATVLSGSVVEFVCRV-----GGDPLPTILWRRDDGKMPTGRAKILD-DRSLQIENVGPQDEGLYICDVENLVGSISLRAS 154 (633)
Q Consensus 81 ~~~~~G~~~~L~C~~-----~~~p~p~i~W~~~~~~i~~~~~~~~~-~~~L~i~~v~~~d~G~Y~C~~~n~~g~~s~~~~ 154 (633)
..+.+|+.+.|.|.+ .|.|.+.++|+|+|.... +..... +..|.|.++..+|+|.|+|.+.|..|..+..+.
T Consensus 36 ~~~~~ge~~~l~C~~~~~~~~g~p~~~i~W~K~g~~~~--~~~~~~~g~~l~i~~~~~~DsG~Y~C~a~N~~g~~~~s~~ 113 (326)
T PHA02785 36 FMELENEPVILPCPQINTLSSGYNILDILWEKRGADND--RIIPIDNGSNMLILNPTQSDSGIYICITKNETYCDMMSLN 113 (326)
T ss_pred hhhhcCCCEEEECCCccccccCCCCceEEEEECCCccc--eEEEccCCceEEEcccCcccCeEEEEEEECCCcceEEEEE
Confidence 346689999999997 588889999999985422 222222 345889999999999999999999988888888
Q ss_pred EEEEeec-cccccCCCceEEecCCcEEEEEeC----CCCCCCCeEEEEECCEEeccCCCeeEEeccceeeeEEE----ee
Q psy15127 155 LTVHLLR-DDFRAEPKDTRVASGETALLECGP----PKGQPEPTLHWKKNGQFIDLESSKSLDLSRRTLGWLRV----RP 225 (633)
Q Consensus 155 l~V~~~~-p~~~~~~~~~~~~~g~~~~l~C~~----~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~----~g 225 (633)
|+|.... +.+...+....+.+|..+.|.|.. ..+.|++.+.|++++. + ............+.+.++ .|
T Consensus 114 L~V~~~~~~~~~~~~~~~~~~~g~~~~i~C~~~~~~~~~~~~~~i~W~k~~~-~--~~~r~~~~~~~~L~i~~v~~~d~G 190 (326)
T PHA02785 114 LTIVSVSESNIDLISYPQIVNERSTGEMVCPNINAFIASNVNADIIWSGHRR-L--RNKRLKQRTPGIITIEDVRKNDAG 190 (326)
T ss_pred EEEEecCCCccceeeccceecccCcEEEECCChhhcccCCCCceEEEccCCc-c--CCcceEecCCCeEEEeecChhhCe
Confidence 8887652 223323444567799999999972 2457889999988642 2 112222222345555544 38
Q ss_pred eEEEEeecCCCCCCc-------c------cc--cccceeEEecCCceEEEEEEEeeecCC---eeEEEECCEEEEeccCC
Q psy15127 226 LYWNVARPRANLNPR-------Y------IG--RKMASLLIWNHPRVNRLSCFAEGSPLP---SVFWTQEGSQVLMFPGN 287 (633)
Q Consensus 226 ~y~C~a~~~~~~~p~-------~------~~--~~~~~~~~~~~g~~~~l~C~~~g~p~~---~v~W~~~g~~~~~~~~~ 287 (633)
.|+|.+.|..+.... + .. ...+.......|+.++|.|.+.|.|.+ .+.|.+||..+......
T Consensus 191 ~Y~C~~~n~~g~~~~~~t~~v~l~V~~~~~pp~~~~p~~~~~~~G~~v~L~C~a~g~P~~~~~~v~W~kng~~i~~~~~~ 270 (326)
T PHA02785 191 YYTCVLKYIYGDKTYNVTRIVKLEVRDRIIPPTMQLPEGVVTSIGSNLTIACRVSLRPPTTDADVFWISNGMYYEEDDED 270 (326)
T ss_pred EEEEEEEeccCCEEEeEEEEEEEEEeccCCCceecCCCcEEecCCCcEEEEEEEECCCCCCCceEEEEECCEECCCcCCC
Confidence 999999987652100 0 00 011233455679999999999998874 89999999876422111
Q ss_pred ccceEEEc-----------cCceEEEcCCCCCCCeEEEEEEEeCCcee
Q psy15127 288 AYGHLHVT-----------QEGTLRIQGVQKEDAGFFVCSALSVAGST 324 (633)
Q Consensus 288 ~~~~~~~~-----------~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~ 324 (633)
...++... ..+.|.|.+++.+|.|.|+|.|.|..|..
T Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~L~I~~V~~~D~G~Y~C~A~n~~~~~ 318 (326)
T PHA02785 271 GDGRISVANKIYTTDKRRVITSRLNINPVKEEDATTFTCMAFTIPSIS 318 (326)
T ss_pred CceeEEEecCccccccceeeeEEEEECCcchhcCeeeEEEEEeccCce
Confidence 11122111 13579999999999999999999988443
No 9
>KOG4194|consensus
Probab=99.89 E-value=1.5e-22 Score=197.34 Aligned_cols=188 Identities=26% Similarity=0.475 Sum_probs=156.7
Q ss_pred CceEEEcCCCC--CCeEEEEEEe-------------cCcCCeeeeCCCceEEEcCCeEEEEEEEeccCCCeEEEEeCCcc
Q psy15127 47 GSVLGARGALS--DDQWKLIAKE-------------ALIKPFPISEPSDATVLSGSVVEFVCRVGGDPLPTILWRRDDGK 111 (633)
Q Consensus 47 ~~~L~i~~v~~--~G~Y~C~a~~-------------v~~~p~~~~~~~~~~~~~G~~~~L~C~~~~~p~p~i~W~~~~~~ 111 (633)
-+.|.+.||+. +|.|+|.++| |...|.|+..|.+..+..|+.+.|.|.+.|+|.|+|.|.|+|..
T Consensus 573 ~~~L~L~nVt~td~grYQCVvtN~FGStysqk~KltV~~~PsFtktP~dltl~tg~mArl~CaAtG~P~PeIawqkdggt 652 (873)
T KOG4194|consen 573 TAILHLDNVTFTDEGRYQCVVTNHFGSTYSQKAKLTVNQAPSFTKTPEDLTLRTGQMARLECAATGHPRPEIAWQKDGGT 652 (873)
T ss_pred hheeeeeeeecccCceEEEEEecccCcchhheeEEEeeccCccccCcccceeecccceeeeeeccCCCCcceeehhcCCC
Confidence 35699999998 9999999999 66789999999999999999999999999999999999998876
Q ss_pred -CCCC---CeEEc-ccceEEEccCCCCCCeEEEEEEEeCCceEEEEEEEEEEeeccccccCCCceEEecCCcEEEEEeCC
Q psy15127 112 -MPTG---RAKIL-DDRSLQIENVGPQDEGLYICDVENLVGSISLRASLTVHLLRDDFRAEPKDTRVASGETALLECGPP 186 (633)
Q Consensus 112 -i~~~---~~~~~-~~~~L~i~~v~~~d~G~Y~C~~~n~~g~~s~~~~l~V~~~~p~~~~~~~~~~~~~g~~~~l~C~~~ 186 (633)
.+.. |..+. ++..+.|.||..+|+|.|+|.|.|.+|..++.+.|+|.+. |.+..+-.+..+..|+++.|.|. .
T Consensus 653 dFPAA~eRRl~Vmpedd~f~Itnvk~eD~GiYtC~A~n~AG~isanAtL~V~e~-p~f~~PL~~~~V~~get~vlqC~-a 730 (873)
T KOG4194|consen 653 DFPAARERRLHVMPEDDVFFITNVKIEDQGIYTCTAQNVAGQISANATLTVLET-PSFSIPLEDQLVVVGETLVLQCL-A 730 (873)
T ss_pred CCchhhhheeeecCCCCEEEEecccccccceeEEeeeccccceeeceEEEEecC-CcccccccceEEEecceEEEEEe-c
Confidence 5543 22333 4678999999999999999999999999999999999999 89998999999999999999999 5
Q ss_pred CCCCC-CeEEEEECCEEeccCCCeeEEeccceee----eEEEeeeEEEEeecCCC
Q psy15127 187 KGQPE-PTLHWKKNGQFIDLESSKSLDLSRRTLG----WLRVRPLYWNVARPRAN 236 (633)
Q Consensus 187 ~~~p~-~~i~W~~~~~~~~~~~~~~~~~~~~~~~----~~~~~g~y~C~a~~~~~ 236 (633)
.+.|. |.+.|+|+.+++-...+..+...+-.+. .....|.|+|...+..+
T Consensus 731 ~~~~a~pr~~W~k~d~pil~t~rh~f~d~dQllvv~~~~~~daG~yTcem~~~~~ 785 (873)
T KOG4194|consen 731 EGAPADPRLEWFKEDKPILITERHTFPDGDQLLVVKENLVEDAGIYTCEMSNTLG 785 (873)
T ss_pred CCCCCCccccccCCCCceEEeecccCCCCCeEEEEEehhhhhcceEEEEEEeecc
Confidence 66666 9999999999886554333222211111 13346899999888755
No 10
>PHA02785 IL-beta-binding protein; Provisional
Probab=99.83 E-value=6e-19 Score=173.20 Aligned_cols=189 Identities=17% Similarity=0.247 Sum_probs=128.7
Q ss_pred CceEEEcCCCC--CCeEEEEEEe------------c--CcCCeeeeCCCceEEEcCCeEEEEEE-----EeccCCCeEEE
Q psy15127 47 GSVLGARGALS--DDQWKLIAKE------------A--LIKPFPISEPSDATVLSGSVVEFVCR-----VGGDPLPTILW 105 (633)
Q Consensus 47 ~~~L~i~~v~~--~G~Y~C~a~~------------v--~~~p~~~~~~~~~~~~~G~~~~L~C~-----~~~~p~p~i~W 105 (633)
+..|.|.+++. +|.|+|.|+| | ..+|.+...+....+.+|..+.|.|. ..+.|.+.|+|
T Consensus 81 g~~l~i~~~~~~DsG~Y~C~a~N~~g~~~~s~~L~V~~~~~~~~~~~~~~~~~~~g~~~~i~C~~~~~~~~~~~~~~i~W 160 (326)
T PHA02785 81 GSNMLILNPTQSDSGIYICITKNETYCDMMSLNLTIVSVSESNIDLISYPQIVNERSTGEMVCPNINAFIASNVNADIIW 160 (326)
T ss_pred CceEEEcccCcccCeEEEEEEECCCcceEEEEEEEEEecCCCccceeeccceecccCcEEEECCChhhcccCCCCceEEE
Confidence 34588998887 9999999999 1 11122222233455779999999997 23578889999
Q ss_pred EeCCccCCCCCeEEcccceEEEccCCCCCCeEEEEEEEeCCceEE----EEEEEEEEeec-cccccCCCceEEecCCcEE
Q psy15127 106 RRDDGKMPTGRAKILDDRSLQIENVGPQDEGLYICDVENLVGSIS----LRASLTVHLLR-DDFRAEPKDTRVASGETAL 180 (633)
Q Consensus 106 ~~~~~~i~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~n~~g~~s----~~~~l~V~~~~-p~~~~~~~~~~~~~g~~~~ 180 (633)
++++ .+...+.....++.|.|.+++.+|+|.|+|.|.|..|... ..+.|.|..+. |.....|....+..|+.+.
T Consensus 161 ~k~~-~~~~~r~~~~~~~~L~i~~v~~~d~G~Y~C~~~n~~g~~~~~~t~~v~l~V~~~~~pp~~~~p~~~~~~~G~~v~ 239 (326)
T PHA02785 161 SGHR-RLRNKRLKQRTPGIITIEDVRKNDAGYYTCVLKYIYGDKTYNVTRIVKLEVRDRIIPPTMQLPEGVVTSIGSNLT 239 (326)
T ss_pred ccCC-ccCCcceEecCCCeEEEeecChhhCeEEEEEEEeccCCEEEeEEEEEEEEEeccCCCceecCCCcEEecCCCcEE
Confidence 9865 3445555555567999999999999999999999877643 34456565321 2223456677788899999
Q ss_pred EEEeCCCCCCC---CeEEEEECCEEeccCCC---eeEEec------------cceeeeEEE----eeeEEEEeecCCCC
Q psy15127 181 LECGPPKGQPE---PTLHWKKNGQFIDLESS---KSLDLS------------RRTLGWLRV----RPLYWNVARPRANL 237 (633)
Q Consensus 181 l~C~~~~~~p~---~~i~W~~~~~~~~~~~~---~~~~~~------------~~~~~~~~~----~g~y~C~a~~~~~~ 237 (633)
|.|. +.|.|. +.+.|++||..+...+. ..+... ...|.+..+ .|.|+|.|.|..+.
T Consensus 240 L~C~-a~g~P~~~~~~v~W~kng~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~V~~~D~G~Y~C~A~n~~~~ 317 (326)
T PHA02785 240 IACR-VSLRPPTTDADVFWISNGMYYEEDDEDGDGRISVANKIYTTDKRRVITSRLNINPVKEEDATTFTCMAFTIPSI 317 (326)
T ss_pred EEEE-EECCCCCCCceEEEEECCEECCCcCCCCceeEEEecCccccccceeeeEEEEECCcchhcCeeeEEEEEeccCc
Confidence 9999 566554 48999999998754321 111110 112222222 38999999997753
No 11
>PHA02826 IL-1 receptor-like protein; Provisional
Probab=99.77 E-value=2.6e-17 Score=151.01 Aligned_cols=120 Identities=23% Similarity=0.284 Sum_probs=87.8
Q ss_pred CCceEEEcCCeEEEEEEEeccC-----------CCeEEEEeCCccC--C--CCC---------eEEcccceEEEccCCCC
Q psy15127 78 PSDATVLSGSVVEFVCRVGGDP-----------LPTILWRRDDGKM--P--TGR---------AKILDDRSLQIENVGPQ 133 (633)
Q Consensus 78 ~~~~~~~~G~~~~L~C~~~~~p-----------~p~i~W~~~~~~i--~--~~~---------~~~~~~~~L~i~~v~~~ 133 (633)
...+.+.+|+++.|.|.+.+.+ .+.+.|+|++... . ..+ .....++.|.|.+++.+
T Consensus 29 ~~~~~v~eGe~v~L~C~~~~~~~~~~~~~~~~~~~~V~W~k~~s~~~v~~~~~~~~~~~i~~~~~~~r~~~L~I~~v~~~ 108 (227)
T PHA02826 29 LTPVYAKFGDPMVLLCTGKHYKKSIFFDKTFITSYNVTWSKTDSLAFVRDSGARTKIKKITHNEIGDRSENLWIGNVINI 108 (227)
T ss_pred cceEEecCCCCEEEEccccccccccccccccCCCccEEEEeCCeEEEEEcCCCccccccccccceecCCCeEEECCCChH
Confidence 4567789999999999986644 3479999987542 1 111 11122468999999999
Q ss_pred CCeEEEEEEEeCCceEEEEEEEEEEeeccccccCCCceEEecCCcEEEEEeCCCC----CCCCeEEEEECCEEec
Q psy15127 134 DEGLYICDVENLVGSISLRASLTVHLLRDDFRAEPKDTRVASGETALLECGPPKG----QPEPTLHWKKNGQFID 204 (633)
Q Consensus 134 d~G~Y~C~~~n~~g~~s~~~~l~V~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~----~p~~~i~W~~~~~~~~ 204 (633)
|+|.|+|.|.|..+.....+.|.|... +....+.+|+.+.|.|.+..+ .|.++|+|+|+|..+.
T Consensus 109 DsG~Y~C~a~N~~~~~~~~i~L~V~~~-------~~~~~~~~G~~v~L~C~~~~~~~~~~p~p~I~WyKng~~l~ 176 (227)
T PHA02826 109 DEGIYICTISSGNICEESTIRLTFDSG-------TINYQFNSGKDSKLHCYGTDGISSTFKDYTLTWYKNGNIVL 176 (227)
T ss_pred HCEEEEEEEEECCcceEEEEEEEEecC-------CccceEecCCCEEEEeeCCCCccccCCCceEEEEECCEECC
Confidence 999999999998888888888888532 224467789999999985433 3466777777776553
No 12
>KOG3515|consensus
Probab=99.73 E-value=5.6e-16 Score=159.95 Aligned_cols=321 Identities=16% Similarity=0.149 Sum_probs=193.4
Q ss_pred ccccCCCCCCCCCCccccccceeeEEEEecccCCCCCceEEeeCceEEEcCCCC--CCeEEEEEEe-------------c
Q psy15127 4 HLDTNHAHPMSSPRAEIEPATRTNRVSISGDPGFDSRRSRSIFGSVLGARGALS--DDQWKLIAKE-------------A 68 (633)
Q Consensus 4 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~--~G~Y~C~a~~-------------v 68 (633)
...+.|..-..+|.+.+.|+.-+.+.+ .|.....+.+|....... -+.|.|++.| +
T Consensus 24 ~v~l~C~v~~~pp~~~~eW~h~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~c~a~ns~~~~~~~~~~l~v 94 (741)
T KOG3515|consen 24 DVPLPCRVNSNPPEIDVEWYHSTSGEH---------GRYATIADPTLVTTGDVRDTVAELNCRAFNSVGMPSRCPMILDV 94 (741)
T ss_pred cceeeeecCCCCCCcceEEEecCcccc---------cccccccCCceeeecchhhhhhhhhhhhcccccCceecceeecc
Confidence 445556666666677777544333332 333344557788777665 9999999999 4
Q ss_pred CcCCeeeeCCCceEEEcCCeEEEEEEEe--ccCCCeEEEEeCCccCCCC---C---------eEEcccceEEEccCCCCC
Q psy15127 69 LIKPFPISEPSDATVLSGSVVEFVCRVG--GDPLPTILWRRDDGKMPTG---R---------AKILDDRSLQIENVGPQD 134 (633)
Q Consensus 69 ~~~p~~~~~~~~~~~~~G~~~~L~C~~~--~~p~p~i~W~~~~~~i~~~---~---------~~~~~~~~L~i~~v~~~d 134 (633)
..+|.-...........+..+.+.|.+. +.|.+.+.|++++...... + ........|.+...+.+|
T Consensus 95 ~~~pa~~~~~~e~~~~~~~vvqi~c~~~~~~~P~~nlrW~~n~r~e~~~~~~~~~~~~~a~gss~t~~s~l~~~v~Rka~ 174 (741)
T KOG3515|consen 95 DYPPACLPELGEIFQVDKGVVQIICSAKVAGRPNPNLRWGFNNRAELNAVNQRGRVGAGALGSSYTEPSLLKQTVSRKAD 174 (741)
T ss_pred ccCccccccccchhhhcCCeEEEEEeecCCCCCCcceeeeeccEEeecccCCcccccccccCceeccccceeeEEEEecC
Confidence 4455444445556677889999999764 5677889999987643210 0 011234568899999999
Q ss_pred CeEEEEEEEeC---CceEEEEEEEEEEeeccccccC--CCceEEecCCcEEEEEeCCCCCCCCeEEEEECCEEeccCCCe
Q psy15127 135 EGLYICDVENL---VGSISLRASLTVHLLRDDFRAE--PKDTRVASGETALLECGPPKGQPEPTLHWKKNGQFIDLESSK 209 (633)
Q Consensus 135 ~G~Y~C~~~n~---~g~~s~~~~l~V~~~~p~~~~~--~~~~~~~~g~~~~l~C~~~~~~p~~~i~W~~~~~~~~~~~~~ 209 (633)
.|+|+|.|.+. .+.......+.|..+...+... ..-..+.+|+.+.|.|.+..++|.+.++|+++..........
T Consensus 175 ~g~~tC~A~nr~s~~l~~~~~~~i~v~~~~~~~~~~~~~~~qsF~~g~~inlvc~~~gg~P~~~~~w~~~s~~~~~~sl~ 254 (741)
T KOG3515|consen 175 NGNYTCPANNRNSPGLSFAKQLTIIVEAPCKGIGITGAQEQQSFTEGQTINLVCNAQGGNPSQQQTWYKDSRPQSESSLL 254 (741)
T ss_pred CceeEcccccccCccccccceeEeecccccccceecchhhcCcccccceEEEEehhhcCCcchhhhhccccccchhhhcc
Confidence 99999999874 3333444445554443333222 222577899999999998889999999999988776543111
Q ss_pred eEEecccee--eeEEEe------eeEEEEeec-------CCCCCCcccccccceeEEecCCceEEEEEEE-eeecCCeeE
Q psy15127 210 SLDLSRRTL--GWLRVR------PLYWNVARP-------RANLNPRYIGRKMASLLIWNHPRVNRLSCFA-EGSPLPSVF 273 (633)
Q Consensus 210 ~~~~~~~~~--~~~~~~------g~y~C~a~~-------~~~~~p~~~~~~~~~~~~~~~g~~~~l~C~~-~g~p~~~v~ 273 (633)
......... ...... -...|.+.| .+...+............+..|+...+.|.. .++|+..+.
T Consensus 255 ~~~~sg~~v~~~~~~~~~r~~~~~~~kc~a~n~~~~~~~tav~~~~~~~~Ist~~~~ls~g~s~r~~c~~sss~p~~~i~ 334 (741)
T KOG3515|consen 255 SQEPSGDTVSSTLVLRVGRQDLQAQLKCKASNLLAASQITAVQVKPTAVPISTSDSGLSSGRSARSSCVSSSSKPPAHIA 334 (741)
T ss_pred cCCCCCCcccccccccccccchhhhhhccccCccccceeeecccccccccccCcccccccccccccceeccCCCCcccee
Confidence 000000000 000111 245699988 1111111222222233336677888899887 456778999
Q ss_pred EEECCEEEEeccCCccceE--EEccCceEEEcCCCCCCCeEEEEEEEeCCceeEEEEEEEEE
Q psy15127 274 WTQEGSQVLMFPGNAYGHL--HVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVR 333 (633)
Q Consensus 274 W~~~g~~~~~~~~~~~~~~--~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~ 333 (633)
|+++............... .....-.+........|.|.|+|.+.+.......+..+.+.
T Consensus 335 w~~~~~~~~~~~~~~~~t~~~~~v~~~~~~~q~~~~~~~g~v~c~a~~~~~~~~sss~~~l~ 396 (741)
T KOG3515|consen 335 WYKDTKMPKGSQKASSKTSNMGGVAVISHYAQPSSQQDGGQVTCPADNLELAHSSSSSFLLP 396 (741)
T ss_pred eeccCcccccccCcccCCCcccceeeEEeeecccchhcCceEEccccccccccccccceecc
Confidence 9997665432221111000 00011146666778889999999999887655555444443
No 13
>cd05851 Ig3_Contactin-1 Third Ig domain of contactin-1. Ig3_Contactin-1: Third Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.
Probab=99.68 E-value=4.5e-16 Score=121.13 Aligned_cols=88 Identities=31% Similarity=0.479 Sum_probs=79.3
Q ss_pred CCeeeeCCCceEEEcCCeEEEEEEEeccCCCeEEEEeCCccCCCCCeEEcccceEEEccCCCCCCeEEEEEEEeCCceEE
Q psy15127 71 KPFPISEPSDATVLSGSVVEFVCRVGGDPLPTILWRRDDGKMPTGRAKILDDRSLQIENVGPQDEGLYICDVENLVGSIS 150 (633)
Q Consensus 71 ~p~~~~~~~~~~~~~G~~~~L~C~~~~~p~p~i~W~~~~~~i~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~n~~g~~s 150 (633)
+|.|...+.+..+.+|+.+.|.|.+.|.|.|.++|+|++..+.........++.|.|.+++.+|+|.|+|.|.|..|..+
T Consensus 1 ~p~i~~~~~~~~~~~G~~v~l~C~~~G~P~P~v~W~k~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~ 80 (88)
T cd05851 1 PADINVKFKDTYALKGQNVTLECFALGNPVPVIRWRKILEPMPATAEISMSGAVLKIFNIQPEDEGTYECEAENIKGKDK 80 (88)
T ss_pred CCceEEccccEEEeCCCcEEEEEEecccCCCEEEEEECCcCCCCCCEEecCCCEEEECcCChhhCEEEEEEEEcCCCceE
Confidence 58899999999999999999999999999999999999998876554445567899999999999999999999999999
Q ss_pred EEEEEEEE
Q psy15127 151 LRASLTVH 158 (633)
Q Consensus 151 ~~~~l~V~ 158 (633)
..+.|.|.
T Consensus 81 ~~~~l~V~ 88 (88)
T cd05851 81 HQARVYVQ 88 (88)
T ss_pred EEEEEEEC
Confidence 88888873
No 14
>KOG0196|consensus
Probab=99.68 E-value=7.6e-16 Score=156.08 Aligned_cols=184 Identities=24% Similarity=0.225 Sum_probs=137.2
Q ss_pred CCCCCCcEEEEeeCCeEEEEeCCCCCCCCCCcceeEEEEEEEEecCCC-CeE---------EEEEeeeeceEEEecCCCC
Q psy15127 410 PGPPAAPVILNTTRGSVTLGWGEPEPRGGGVAPVIGYTVEYFSSDLQT-GWV---------VAAHRITSTSITVSDLKPD 479 (633)
Q Consensus 410 p~~p~~~~~~~~~~~~i~l~W~~~~~~~~~~~~i~~Y~v~~~~~~~~~-~~~---------~~~~~~~~~~~~i~~L~p~ 479 (633)
|++|.++.. .++.+++.|.|.+|.+.+ +..-..|.+.++.-+... ... ......+++.+++.+|.|.
T Consensus 332 PSaP~nlis-~vn~Ts~~L~W~~P~d~G--GR~Di~y~v~Ck~c~~~~~~C~~Cg~~V~f~P~q~gLt~~~V~v~~L~ah 408 (996)
T KOG0196|consen 332 PSAPRNLIS-NVNGTSLILEWSPPADTG--GREDITYNVICKKCGGGRGACEPCGDNVRFTPRQRGLTETSVTVSDLLAH 408 (996)
T ss_pred CCccceeee-ecccceEEEEecCCcccC--CCcceEEEEEeeccCCCCCccccCCCCceECCCCCCcccceEEEeccccc
Confidence 555666544 488999999999999886 556677888776543211 111 1112234678999999999
Q ss_pred CeEEEEEEEEeccccCCC---CCCCCceeecCCCCCCCcchHHHHHHHhCCceEEeeeeeecccceEEEEEEEecCCCcc
Q psy15127 480 TSYMFIVRAENSHGLGIP---SPVSPITRTLGLNSLVPQHLLDEARARLGTKVVNLRELIPTASTAVRITWEVSWGSVPQ 556 (633)
Q Consensus 480 ~~Y~~~v~a~n~~G~g~~---s~~~~~~~t~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~si~v~W~~p~~~~p~ 556 (633)
+.|.|.|.|.|.+..-.+ .....-++|.+..|++.+.+ +....+.++|+|+|..|
T Consensus 409 ~~YTFeV~AvNgVS~lsp~~~~~a~vnItt~qa~ps~V~~~----------------r~~~~~~~sitlsW~~p------ 466 (996)
T KOG0196|consen 409 TNYTFEVEAVNGVSDLSPFPRQFASVNITTNQAAPSPVSVL----------------RQVSRTSDSITLSWSEP------ 466 (996)
T ss_pred cccEEEEEEeecccccCCCCCcceeEEeeccccCCCccceE----------------EEeeeccCceEEecCCC------
Confidence 999999999998654222 22223356777777777666 88889999999999977
Q ss_pred cccchhhhhcceeEEEEEEcCCCcccceeeeeeccceeEeecCCccceEEeeccccceeEEEEEeccccccccccCC
Q psy15127 557 HLLDEARARLGTKVVNLRELIPTASTAVRITWEKYNMATVMNAATTTSYTVTHLRKFTKYEFFLVPFFKTVEGARLD 633 (633)
Q Consensus 557 ~~~~~~~~i~~y~~i~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~i~~L~~~t~Y~~~v~a~n~~g~g~~s~ 633 (633)
..++|.|.-| .+.|.+++.++ ..+ ..+ ....+..+|.+|+|++.|.|+|+|.+.+|.|+.|.
T Consensus 467 --~~png~ildY-Evky~ek~~~e--------~~~--~~~--~t~~~~~ti~gL~p~t~YvfqVRarT~aG~G~~S~ 528 (996)
T KOG0196|consen 467 --DQPNGVILDY-EVKYYEKDEDE--------RSY--STL--KTKTTTATITGLKPGTVYVFQVRARTAAGYGPYSG 528 (996)
T ss_pred --CCCCCcceeE-EEEEeeccccc--------cce--eEE--ecccceEEeeccCCCcEEEEEEEEecccCCCCCCC
Confidence 6778999999 99999887654 112 222 24578899999999999999999999999999874
No 15
>cd05762 Ig8_MLCK Eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK). Ig8_MLCK: the eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK). MLCK is a key regulator of different forms of cell motility involving actin and myosin II. Agonist stimulation of smooth muscle cells increases cytosolic Ca2+, which binds calmodulin. This Ca2+-calmodulin complex in turn binds to and activates MLCK. Activated MLCK leads to the phosphorylation of the 20 kDa myosin regulatory light chain (RLC) of myosin II and the stimulation of actin-activated myosin MgATPase activity. MLCK is widely present in vertebrate tissues; it phosphorylates the 20 kDa RLC of both smooth and nonmuscle myosin II. Phosphorylation leads to the activation of the myosin motor domain and altered structural properties of myosin II. In smooth muscle MLCK it is involved in initiating contraction. In nonmuscle cells, MLCK may participate in cell division and cell motility; it has
Probab=99.64 E-value=2.2e-15 Score=119.65 Aligned_cols=89 Identities=31% Similarity=0.425 Sum_probs=79.7
Q ss_pred CeeeeCCCceEEEcCCeEEEEEEEeccCCCeEEEEeCCccCCCCC-eEEc---ccceEEEccCCCCCCeEEEEEEEeCCc
Q psy15127 72 PFPISEPSDATVLSGSVVEFVCRVGGDPLPTILWRRDDGKMPTGR-AKIL---DDRSLQIENVGPQDEGLYICDVENLVG 147 (633)
Q Consensus 72 p~~~~~~~~~~~~~G~~~~L~C~~~~~p~p~i~W~~~~~~i~~~~-~~~~---~~~~L~i~~v~~~d~G~Y~C~~~n~~g 147 (633)
|.|+..|.++.+..|+.+.|.|.+.|.|.+.+.|+|+|..+..+. .... ..+.|.|.++..+|+|.|+|.|.|..|
T Consensus 1 p~~~~~p~~~~v~~G~~v~l~C~~~G~p~p~v~W~kdg~~l~~~~~~~~~~~~~~s~L~I~~~~~~D~G~Ytc~a~N~~G 80 (98)
T cd05762 1 PQIIQFPEDMKVRAGESVELFCKVTGTQPITCTWMKFRKQIQEGEGIKIENTENSSKLTITEGQQEHCGCYTLEVENKLG 80 (98)
T ss_pred CceEECCcCEEEECCCEEEEEEEEcccCCCceEEEECCEEecCCCcEEEEecCCeeEEEECCCChhhCEEEEEEEEcCCC
Confidence 678889999999999999999999999999999999999987543 3332 246899999999999999999999999
Q ss_pred eEEEEEEEEEEee
Q psy15127 148 SISLRASLTVHLL 160 (633)
Q Consensus 148 ~~s~~~~l~V~~~ 160 (633)
...+.+.|.|.+.
T Consensus 81 ~~~~~~~l~V~~~ 93 (98)
T cd05762 81 SRQAQVNLTVVDK 93 (98)
T ss_pred ceeEEEEEEEecC
Confidence 9999999999987
No 16
>cd04968 Ig3_Contactin_like Third Ig domain of contactin. Ig3_Contactin_like: Third Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week
Probab=99.59 E-value=2.2e-14 Score=112.18 Aligned_cols=88 Identities=32% Similarity=0.594 Sum_probs=76.7
Q ss_pred CCeeeeCCCceEEEcCCeEEEEEEEeccCCCeEEEEeCCccCCCCCeEEcccceEEEccCCCCCCeEEEEEEEeCCceEE
Q psy15127 71 KPFPISEPSDATVLSGSVVEFVCRVGGDPLPTILWRRDDGKMPTGRAKILDDRSLQIENVGPQDEGLYICDVENLVGSIS 150 (633)
Q Consensus 71 ~p~~~~~~~~~~~~~G~~~~L~C~~~~~p~p~i~W~~~~~~i~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~n~~g~~s 150 (633)
||.+...|.+..+.+|+.+.|.|.+.|.|.|.++|+|++..+.........++.|.|.+++.+|+|.|+|.|.|..|..+
T Consensus 1 p~~~~~~p~~~~~~~g~~v~l~C~~~g~P~p~v~W~k~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~ 80 (88)
T cd04968 1 PSIIVVFPKDTYALKGQNVTLECFALGNPVPQIKWRKVDGSMPSSAEISMSGAVLKIPNIQFEDEGTYECEAENIKGKDT 80 (88)
T ss_pred CCcEEECCCceEEeCCCcEEEEEEeeEeCCCEEEEEECCCcCCCccEEEEeCCEEEECCCCcccCEEEEEEEEECCCcEE
Confidence 46778888999999999999999999999999999998887655444445678999999999999999999999999988
Q ss_pred EEEEEEEE
Q psy15127 151 LRASLTVH 158 (633)
Q Consensus 151 ~~~~l~V~ 158 (633)
..+.|.|.
T Consensus 81 ~~~~l~V~ 88 (88)
T cd04968 81 HQGRIYVQ 88 (88)
T ss_pred EEEEEEEC
Confidence 88888773
No 17
>PHA02826 IL-1 receptor-like protein; Provisional
Probab=99.58 E-value=3.8e-14 Score=130.22 Aligned_cols=111 Identities=15% Similarity=0.202 Sum_probs=82.1
Q ss_pred CceEEEcCCCC--CCeEEEEEEe------cCcCCeeeeCCCceEEEcCCeEEEEEEEec-----cCCCeEEEEeCCccCC
Q psy15127 47 GSVLGARGALS--DDQWKLIAKE------ALIKPFPISEPSDATVLSGSVVEFVCRVGG-----DPLPTILWRRDDGKMP 113 (633)
Q Consensus 47 ~~~L~i~~v~~--~G~Y~C~a~~------v~~~p~~~~~~~~~~~~~G~~~~L~C~~~~-----~p~p~i~W~~~~~~i~ 113 (633)
+++|.|.+++. +|.|+|.|.| ......+...+.+..+.+|+.+.|.|.+.+ .|.|.|+|+|+|.++.
T Consensus 97 ~~~L~I~~v~~~DsG~Y~C~a~N~~~~~~~~i~L~V~~~~~~~~~~~G~~v~L~C~~~~~~~~~~p~p~I~WyKng~~l~ 176 (227)
T PHA02826 97 SENLWIGNVINIDEGIYICTISSGNICEESTIRLTFDSGTINYQFNSGKDSKLHCYGTDGISSTFKDYTLTWYKNGNIVL 176 (227)
T ss_pred CCeEEECCCChHHCEEEEEEEEECCcceEEEEEEEEecCCccceEecCCCEEEEeeCCCCccccCCCceEEEEECCEECC
Confidence 57899999999 9999999999 111222333344567789999999999853 4578999999999986
Q ss_pred CC-CeEEc-ccceEEEccCCCCCCeEEEEEEEeCC-ce---EEEEEEEEE
Q psy15127 114 TG-RAKIL-DDRSLQIENVGPQDEGLYICDVENLV-GS---ISLRASLTV 157 (633)
Q Consensus 114 ~~-~~~~~-~~~~L~i~~v~~~d~G~Y~C~~~n~~-g~---~s~~~~l~V 157 (633)
.+ +.... .++.|.|.+++.+|+|.|+|.|.... |. .++.+.|+|
T Consensus 177 ~~~r~~~~~~~~~L~I~~V~~~DsG~YtC~a~~~~~g~~y~~t~~~~~~~ 226 (227)
T PHA02826 177 YTDRIQLRNNNSTLVIKSATHDDSGIYTCNLRFNKNSNNYNITKEYKVTI 226 (227)
T ss_pred CCCCEEEeCCCCEEEECcCCHHhCEEEEEEEEEeECCEEEEEEEEEEEEE
Confidence 54 33333 24589999999999999999998654 33 344444443
No 18
>cd05728 Ig4_Contactin-2-like Fourth Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins. Ig4_Contactin-2-like: fourth Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.
Probab=99.58 E-value=1.3e-14 Score=112.38 Aligned_cols=84 Identities=26% Similarity=0.480 Sum_probs=75.3
Q ss_pred eeeCCCceEEEcCCeEEEEEEEeccCCCeEEEEeCCccCCCCCeEEcccceEEEccCCCCCCeEEEEEEEeCCceEEEEE
Q psy15127 74 PISEPSDATVLSGSVVEFVCRVGGDPLPTILWRRDDGKMPTGRAKILDDRSLQIENVGPQDEGLYICDVENLVGSISLRA 153 (633)
Q Consensus 74 ~~~~~~~~~~~~G~~~~L~C~~~~~p~p~i~W~~~~~~i~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~n~~g~~s~~~ 153 (633)
|+..|.+..+.+|+.+.|.|.+.|.|.|.+.|+|++..+.........++.|.|.+++.+|+|.|+|.|.|..|.....+
T Consensus 2 ~~~~p~~~~~~~G~~~~l~C~~~g~p~p~v~W~k~g~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~N~~G~~~~~~ 81 (85)
T cd05728 2 WLKVISDTEADIGSSLRWECKASGNPRPAYRWLKNGQPLASENRIEVEAGDLRITKLSLSDSGMYQCVAENKHGTIYASA 81 (85)
T ss_pred ccccCCccEEcCCCcEEEEEEeeEeCCCEEEEEECCEECCCCCeEEEeCCEEEEeeCCHHHCEEEEEEEECCCCeEEEEE
Confidence 45678889999999999999999999999999999999876655555678999999999999999999999999988888
Q ss_pred EEEE
Q psy15127 154 SLTV 157 (633)
Q Consensus 154 ~l~V 157 (633)
.|.|
T Consensus 82 ~l~V 85 (85)
T cd05728 82 ELAV 85 (85)
T ss_pred EEEC
Confidence 8765
No 19
>cd05745 Ig3_Peroxidasin Third immunoglobulin (Ig)-like domain of peroxidasin. Ig3_Peroxidasin: the third immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells which have undergone programmed cell death, and protection of the organism against non-self.
Probab=99.55 E-value=2.6e-14 Score=107.51 Aligned_cols=73 Identities=36% Similarity=0.692 Sum_probs=64.9
Q ss_pred cCCeEEEEEEEeccCCCeEEEEeCCccCCCC-CeEEcccceEEEccCCCCCCeEEEEEEEeCCceEEEEEEEEE
Q psy15127 85 SGSVVEFVCRVGGDPLPTILWRRDDGKMPTG-RAKILDDRSLQIENVGPQDEGLYICDVENLVGSISLRASLTV 157 (633)
Q Consensus 85 ~G~~~~L~C~~~~~p~p~i~W~~~~~~i~~~-~~~~~~~~~L~i~~v~~~d~G~Y~C~~~n~~g~~s~~~~l~V 157 (633)
+|+++.|.|.+.|.|.|.|+|+|++..+..+ +.....++.|.|.+++.+|+|.|+|.|.|..|..+..+.|.|
T Consensus 1 eG~~v~l~C~~~g~P~p~i~W~k~g~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~~L~V 74 (74)
T cd05745 1 EGQTVDFLCEAQGYPQPVIAWTKGGSQLSVDRRHLVLSSGTLRISRVALHDQGQYECQAVNIVGSQRTVAQLTV 74 (74)
T ss_pred CCCeEEEEeECCEecCCEEEEEECCEECCCCCCeEEccCCeEEEeeCCHHhCEEEEEEEEeCCCceeEEEEEeC
Confidence 6899999999999999999999999988654 344556779999999999999999999999999988888875
No 20
>cd05852 Ig5_Contactin-1 Fifth Ig domain of contactin-1. Ig5_Contactin-1: fifth Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.
Probab=99.55 E-value=3e-14 Score=106.04 Aligned_cols=72 Identities=33% Similarity=0.533 Sum_probs=64.1
Q ss_pred CCeEEEEEEEeccCCCeEEEEeCCccCCC-CCeEEcccceEEEccCCCCCCeEEEEEEEeCCceEEEEEEEEE
Q psy15127 86 GSVVEFVCRVGGDPLPTILWRRDDGKMPT-GRAKILDDRSLQIENVGPQDEGLYICDVENLVGSISLRASLTV 157 (633)
Q Consensus 86 G~~~~L~C~~~~~p~p~i~W~~~~~~i~~-~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~n~~g~~s~~~~l~V 157 (633)
|+.+.|.|.+.|.|.|.|+|+|++..+.. .+..+..+++|.|.+++.+|+|.|+|.|.|..|..+..+.|.|
T Consensus 1 G~~~~l~C~~~g~P~p~v~W~k~~~~l~~~~r~~~~~~g~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~~ 73 (73)
T cd05852 1 GGRVIIECKPKAAPKPKFSWSKGTELLVNNSRISIWDDGSLEILNITKLDEGSYTCFAENNRGKANSTGVLSV 73 (73)
T ss_pred CCeEEEEEecceeCCCEEEEEeCCEecccCCCEEEcCCCEEEECcCChhHCEEEEEEEECCCCceeEEEEEEC
Confidence 78899999999999999999999987754 4555667789999999999999999999999999998888875
No 21
>cd05747 Ig5_Titin_like M5, fifth immunoglobulin (Ig)-like domain of human titin C terminus and similar proteins. Ig5_Titin_like: domain similar to the M5, fifth immunoglobulin (Ig)-like domain from the human titin C terminus. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic; depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone, and appears to function similar to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching.
Probab=99.54 E-value=6.3e-14 Score=110.54 Aligned_cols=86 Identities=30% Similarity=0.539 Sum_probs=74.9
Q ss_pred cCCeeeeCCCceEEEcCCeEEEEEEEeccCCCeEEEEeCCccCCCC-CeEEcc---cceEEEccCCCCCCeEEEEEEEeC
Q psy15127 70 IKPFPISEPSDATVLSGSVVEFVCRVGGDPLPTILWRRDDGKMPTG-RAKILD---DRSLQIENVGPQDEGLYICDVENL 145 (633)
Q Consensus 70 ~~p~~~~~~~~~~~~~G~~~~L~C~~~~~p~p~i~W~~~~~~i~~~-~~~~~~---~~~L~i~~v~~~d~G~Y~C~~~n~ 145 (633)
.+|.|+..|.+..+.+|+.+.|.|.+.|.|.|.+.|+|+|..+..+ +..... .+.|.|.+++.+|+|.|+|.|.|.
T Consensus 2 ~~~~~~~~p~~~~~~~G~~~~L~C~~~g~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~N~ 81 (92)
T cd05747 2 LPATILTKPRSLTVSEGESARFSCDVDGEPAPTVTWMREGQIIVSSQRHQITSTEYKSTFEISKVQMSDEGNYTVVVENS 81 (92)
T ss_pred CCCcccccCccEEEeCCCcEEEEEEEeecCCCEEEEEECCEECCCCCcEEEEEcCCeeEEEECCCCcccCEeEEEEEEcC
Confidence 4789999999999999999999999999999999999999887654 333322 358999999999999999999999
Q ss_pred CceEEEEEEE
Q psy15127 146 VGSISLRASL 155 (633)
Q Consensus 146 ~g~~s~~~~l 155 (633)
.|..+..+.|
T Consensus 82 ~G~~~~~~~l 91 (92)
T cd05747 82 EGKQEAQFTL 91 (92)
T ss_pred CCCEeEEEEe
Confidence 9998887766
No 22
>cd04975 Ig4_SCFR_like Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR) and similar proteins. Ig4_SCFR_like; fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR). In addition to SCFR this group also includes the fourth Ig domain of platelet-derived growth factor receptors (PDGFR), alpha and beta, the fourth Ig domain of macrophage colony stimulating factor (M-CSF), and the Ig domain of the receptor tyrosine kinase KIT. SCFR and the PDGFR alpha and beta have similar organization: an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR, this fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth SCFR_Ig-like domain abolishes
Probab=99.54 E-value=7.2e-14 Score=110.91 Aligned_cols=80 Identities=23% Similarity=0.293 Sum_probs=68.9
Q ss_pred CceEEEcCCeEEEEEEEec-cCCCeEEEEeCCccCCCCCe-EEcc--------cceEEEccCCCCCCeEEEEEEEeCCce
Q psy15127 79 SDATVLSGSVVEFVCRVGG-DPLPTILWRRDDGKMPTGRA-KILD--------DRSLQIENVGPQDEGLYICDVENLVGS 148 (633)
Q Consensus 79 ~~~~~~~G~~~~L~C~~~~-~p~p~i~W~~~~~~i~~~~~-~~~~--------~~~L~i~~v~~~d~G~Y~C~~~n~~g~ 148 (633)
..+.+.+|+++.|.|.+.| .|.|.+.|+|||.+|..... .... .+.|.|.++..+|+|.|+|.|.|..|.
T Consensus 11 ~~~~v~~G~~v~L~c~v~g~~P~p~v~W~Kdg~~i~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Ytc~A~N~~G~ 90 (101)
T cd04975 11 TTIFVNLGENLNLVVEVEAYPPPPHINWTYDNRTLTNKLTEIVTSENESEYRYVSELKLVRLKESEAGTYTFLASNSDAS 90 (101)
T ss_pred ceEEEECCCCEEEEEEEEecCCCCccEEEeCCeeCCCCcceeEEEeccCcceEEEEEEEeecCHhhCeeEEEEEECCCcc
Confidence 3678999999999999999 89999999999999975432 2221 267999999999999999999999999
Q ss_pred EEEEEEEEEE
Q psy15127 149 ISLRASLTVH 158 (633)
Q Consensus 149 ~s~~~~l~V~ 158 (633)
.+..+.|.|.
T Consensus 91 ~~~t~~L~V~ 100 (101)
T cd04975 91 KSLTFELYVN 100 (101)
T ss_pred EEEEEEEEEE
Confidence 9999998886
No 23
>cd05867 Ig4_L1-CAM_like Fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). Ig4_L1-CAM_like: fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.
Probab=99.52 E-value=1.3e-13 Score=104.27 Aligned_cols=72 Identities=25% Similarity=0.538 Sum_probs=63.3
Q ss_pred CCeEEEEEEEeccCCCeEEEEeCCccCCCC---CeEEcccceEEEccCCCCCCeEEEEEEEeCCceEEEEEEEEE
Q psy15127 86 GSVVEFVCRVGGDPLPTILWRRDDGKMPTG---RAKILDDRSLQIENVGPQDEGLYICDVENLVGSISLRASLTV 157 (633)
Q Consensus 86 G~~~~L~C~~~~~p~p~i~W~~~~~~i~~~---~~~~~~~~~L~i~~v~~~d~G~Y~C~~~n~~g~~s~~~~l~V 157 (633)
|+.++|.|.+.|.|.|.++|+|+|..+... ......++.|.|.+++.+|+|.|+|.|.|..|.....+.|.|
T Consensus 1 G~~v~l~C~~~G~P~p~i~W~k~g~~i~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~V 75 (76)
T cd05867 1 GETARLDCQVEGIPTPNITWSINGAPIEGTDPDPRRHVSSGALILTDVQPSDTAVYQCEARNRHGNLLANAHVHV 75 (76)
T ss_pred CCeEEEEEEeeEeCCCeEEEEECCEECCCCCCCceEEeeCCEEEECCCChhhCEEEEEEEECCCCeEEEEEEEEE
Confidence 789999999999999999999999987542 234445678999999999999999999999999988888877
No 24
>cd05852 Ig5_Contactin-1 Fifth Ig domain of contactin-1. Ig5_Contactin-1: fifth Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.
Probab=99.51 E-value=1.3e-13 Score=102.52 Aligned_cols=73 Identities=21% Similarity=0.420 Sum_probs=64.4
Q ss_pred CceEEEEEEEeeecCCeeEEEECCEEEEeccCCccceEEEccCceEEEcCCCCCCCeEEEEEEEeCCceeEEEEEEEE
Q psy15127 255 PRVNRLSCFAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQV 332 (633)
Q Consensus 255 g~~~~l~C~~~g~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v 332 (633)
|+++.|.|.+.|.|.|.+.|+|++..+. ...++.+..+++|.|.++..+|.|.|+|.|.|..|....++.|.|
T Consensus 1 G~~~~l~C~~~g~P~p~v~W~k~~~~l~-----~~~r~~~~~~g~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~~ 73 (73)
T cd05852 1 GGRVIIECKPKAAPKPKFSWSKGTELLV-----NNSRISIWDDGSLEILNITKLDEGSYTCFAENNRGKANSTGVLSV 73 (73)
T ss_pred CCeEEEEEecceeCCCEEEEEeCCEecc-----cCCCEEEcCCCEEEECcCChhHCEEEEEEEECCCCceeEEEEEEC
Confidence 5789999999999999999999998663 224666777889999999999999999999999999999988864
No 25
>cd05737 Ig_Myomesin_like_C C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein. Ig_Myomesin_like_C: domain similar to the C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein. Myomesin and M-protein are both structural proteins localized to the M-band, a transverse structure in the center of the sarcomere, and are candidates for M-band bridges. Both proteins are modular, consisting mainly of repetitive Ig-like and fibronectin type III (FnIII) domains. Myomesin is expressed in all types of vertebrate striated muscle; M-protein has a muscle-type specific expression pattern. Myomesin is present in both slow and fast fibers; M-protein is present only in fast fibers. It has been suggested that myomesin acts as a molecular spring with alternative splicing as a means of modifying its elasticity.
Probab=99.51 E-value=1.6e-13 Score=108.18 Aligned_cols=82 Identities=27% Similarity=0.509 Sum_probs=68.6
Q ss_pred eCCCceEEEcCCeEEEEEEEeccCCCeEEEEeCCccCCCC-CeEEc-c---cceEEEccCCCCCCeEEEEEEEeCCceEE
Q psy15127 76 SEPSDATVLSGSVVEFVCRVGGDPLPTILWRRDDGKMPTG-RAKIL-D---DRSLQIENVGPQDEGLYICDVENLVGSIS 150 (633)
Q Consensus 76 ~~~~~~~~~~G~~~~L~C~~~~~p~p~i~W~~~~~~i~~~-~~~~~-~---~~~L~i~~v~~~d~G~Y~C~~~n~~g~~s 150 (633)
.-|..+.+.+|+++.|.|.+.|.|.|.+.|+|++..+... +.... . ...|.|.+++.+|+|.|+|.|.|..|..+
T Consensus 6 ~lp~~v~v~~G~~v~L~C~v~G~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~ 85 (92)
T cd05737 6 GLPDVVTIMEGKTLNLTCTVFGDPDPEVSWLKNDQALALSDHYNVKVEQGKYASLTIKGVSSEDSGKYGIVVKNKYGGET 85 (92)
T ss_pred cCCceEEEeCCCcEEEEEEEEecCCCeEEEEECCEECccCCCEEEEEcCCCEEEEEEccCChhhCEEEEEEEEECCCcce
Confidence 3456678999999999999999999999999999988643 32322 1 24799999999999999999999999988
Q ss_pred EEEEEEE
Q psy15127 151 LRASLTV 157 (633)
Q Consensus 151 ~~~~l~V 157 (633)
..+.|.|
T Consensus 86 ~~~~v~v 92 (92)
T cd05737 86 VDVTVSV 92 (92)
T ss_pred EEEEEeC
Confidence 8887765
No 26
>cd05762 Ig8_MLCK Eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK). Ig8_MLCK: the eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK). MLCK is a key regulator of different forms of cell motility involving actin and myosin II. Agonist stimulation of smooth muscle cells increases cytosolic Ca2+, which binds calmodulin. This Ca2+-calmodulin complex in turn binds to and activates MLCK. Activated MLCK leads to the phosphorylation of the 20 kDa myosin regulatory light chain (RLC) of myosin II and the stimulation of actin-activated myosin MgATPase activity. MLCK is widely present in vertebrate tissues; it phosphorylates the 20 kDa RLC of both smooth and nonmuscle myosin II. Phosphorylation leads to the activation of the myosin motor domain and altered structural properties of myosin II. In smooth muscle MLCK it is involved in initiating contraction. In nonmuscle cells, MLCK may participate in cell division and cell motility; it has
Probab=99.50 E-value=2.8e-13 Score=107.56 Aligned_cols=90 Identities=18% Similarity=0.173 Sum_probs=73.0
Q ss_pred eeEEecCCceEEEEEEEeeecCCeeEEEECCEEEEeccCCccceEEEccCceEEEcCCCCCCCeEEEEEEEeCCceeEEE
Q psy15127 248 SLLIWNHPRVNRLSCFAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVR 327 (633)
Q Consensus 248 ~~~~~~~g~~~~l~C~~~g~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~ 327 (633)
....+..|+.+.|.|.+.|.|++.+.|+|+|..+.. ............+.|.|.++..+|+|.|+|.|.|..|....+
T Consensus 8 ~~~~v~~G~~v~l~C~~~G~p~p~v~W~kdg~~l~~--~~~~~~~~~~~~s~L~I~~~~~~D~G~Ytc~a~N~~G~~~~~ 85 (98)
T cd05762 8 EDMKVRAGESVELFCKVTGTQPITCTWMKFRKQIQE--GEGIKIENTENSSKLTITEGQQEHCGCYTLEVENKLGSRQAQ 85 (98)
T ss_pred cCEEEECCCEEEEEEEEcccCCCceEEEECCEEecC--CCcEEEEecCCeeEEEECCCChhhCEEEEEEEEcCCCceeEE
Confidence 345678899999999999999999999999998742 111111111235689999999999999999999999999999
Q ss_pred EEEEEEecccCC
Q psy15127 328 AFLQVREFCVLP 339 (633)
Q Consensus 328 ~~l~v~~~~~~p 339 (633)
+.|.|.+.|..|
T Consensus 86 ~~l~V~~~P~pP 97 (98)
T cd05762 86 VNLTVVDKPDPP 97 (98)
T ss_pred EEEEEecCCCCC
Confidence 999999876554
No 27
>cd05892 Ig_Myotilin_C C-terminal immunoglobulin (Ig)-like domain of myotilin. Ig_Myotilin_C: C-terminal immunoglobulin (Ig)-like domain of myotilin. Mytolin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to the latter family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Myotilin is most abundant in skeletal and cardiac muscle, and is involved in maintaining sarcomere integrity. It binds to alpha-actinin, filamin and actin. Mutations in myotilin lead to muscle disorders.
Probab=99.50 E-value=1.1e-13 Score=103.23 Aligned_cols=69 Identities=30% Similarity=0.589 Sum_probs=58.7
Q ss_pred EEEEEEEeccCCCeEEEEeCCccCCC--CCeEEccc--c--eEEEccCCCCCCeEEEEEEEeCCceEEEEEEEEE
Q psy15127 89 VEFVCRVGGDPLPTILWRRDDGKMPT--GRAKILDD--R--SLQIENVGPQDEGLYICDVENLVGSISLRASLTV 157 (633)
Q Consensus 89 ~~L~C~~~~~p~p~i~W~~~~~~i~~--~~~~~~~~--~--~L~i~~v~~~d~G~Y~C~~~n~~g~~s~~~~l~V 157 (633)
+.|.|.+.|.|.|.|.|+|++..+.. +++.+..+ + +|.|.+++.+|+|.|+|.|.|..|..+..+.|.|
T Consensus 1 v~l~C~v~G~P~P~i~W~k~~~~i~~~~~r~~~~~~~~g~~~L~I~~~~~~D~G~Y~C~A~N~~G~~~~~a~L~V 75 (75)
T cd05892 1 VKLECQISAIPPPKIFWKRNNEMVQYNTDRISLYQDNSGRVTLLIKNVNKKDAGWYTVSAVNEAGVATCHARLDV 75 (75)
T ss_pred CEEEEEEEecCCCeEEEEECCEECcCCCCeEEEEEcCCCcEEEEECCCChhhCEEEEEEEEcCcCeEEEEEEEeC
Confidence 47999999999999999999998863 34443322 2 7999999999999999999999999999888875
No 28
>PF07679 I-set: Immunoglobulin I-set domain; InterPro: IPR013098 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents I-set domains, which are found in several cell adhesion molecules, including vascular (VCAM), intercellular (ICAM), neural (NCAM) and mucosal addressin (MADCAM) cell adhesion molecules, as well as junction adhesion molecules (JAM). I-set domains are also present in several other diverse protein families, including several tyrosine-protein kinase receptors, the hemolymph protein hemolin, the muscle proteins titin, telokin, and twitchin, the neuronal adhesion molecule axonin-1 [], and the signalling molecule semaphorin 4D that is involved in axonal guidance, immune function and angiogenesis [].; PDB: 3MTR_A 2EDK_A 3DMK_B 1KOA_A 3NCM_A 2NCM_A 2V9Q_A 2CR3_A 3QQN_A 3QR2_A ....
Probab=99.50 E-value=1.6e-13 Score=108.31 Aligned_cols=86 Identities=34% Similarity=0.609 Sum_probs=75.6
Q ss_pred CeeeeCCCceEEEcCCeEEEEEEEeccCCCeEEEEeCCccCCCCC-eEEc---ccceEEEccCCCCCCeEEEEEEEeCCc
Q psy15127 72 PFPISEPSDATVLSGSVVEFVCRVGGDPLPTILWRRDDGKMPTGR-AKIL---DDRSLQIENVGPQDEGLYICDVENLVG 147 (633)
Q Consensus 72 p~~~~~~~~~~~~~G~~~~L~C~~~~~p~p~i~W~~~~~~i~~~~-~~~~---~~~~L~i~~v~~~d~G~Y~C~~~n~~g 147 (633)
|.|...+.++.+.+|+++.|.|.+.+.|.+.+.|++++..+..+. .... ....|.|.+++.+|+|.|+|.|.|..|
T Consensus 1 P~~~~~~~~~~v~~G~~~~l~c~~~~~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~n~~g 80 (90)
T PF07679_consen 1 PVFTKKPKDVTVKEGESVTLECEVSGNPPPTVTWYKNGRPLTSSQRYQIESDGGSSSLTIKNVTREDAGTYTCVASNSSG 80 (90)
T ss_dssp EEEEEESSEEEEETTSEEEEEEEEEESSSSEEEEEETTEEEESSSSEEEEEETTEEEEEESSESGGGSEEEEEEEEETTE
T ss_pred CEEEEecCCEEEeCCCEEEEEEEEEeCCCCcccccccccceeeeeeeeeecccceeEEccCCCChhhCEEEEEEEEECCC
Confidence 678889999999999999999999999999999999999886543 2222 246899999999999999999999999
Q ss_pred eEEEEEEEEE
Q psy15127 148 SISLRASLTV 157 (633)
Q Consensus 148 ~~s~~~~l~V 157 (633)
..+..+.|.|
T Consensus 81 ~~~~~~~l~V 90 (90)
T PF07679_consen 81 EATASVNLTV 90 (90)
T ss_dssp EEEEEEEEEE
T ss_pred EEEEEEEEEC
Confidence 9999888876
No 29
>cd05868 Ig4_NrCAM Fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule). Ig4_ NrCAM: fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six IG-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. NrCAM is primarily expressed in the nervous system.
Probab=99.50 E-value=1.7e-13 Score=103.39 Aligned_cols=73 Identities=22% Similarity=0.482 Sum_probs=63.1
Q ss_pred CCeEEEEEEEeccCCCeEEEEeCCccCCCC---CeEEcccceEEEccCCCCCCeEEEEEEEeCCceEEEEEEEEEE
Q psy15127 86 GSVVEFVCRVGGDPLPTILWRRDDGKMPTG---RAKILDDRSLQIENVGPQDEGLYICDVENLVGSISLRASLTVH 158 (633)
Q Consensus 86 G~~~~L~C~~~~~p~p~i~W~~~~~~i~~~---~~~~~~~~~L~i~~v~~~d~G~Y~C~~~n~~g~~s~~~~l~V~ 158 (633)
|+.++|.|.+.|.|.|.|+|+|+|.++... ......++.|.|.+++..|+|.|+|.|.|..|...+.+.|.|.
T Consensus 1 g~~~~l~C~a~G~P~P~i~W~k~g~~i~~~~~~~~~~~~~~~l~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~v~ 76 (76)
T cd05868 1 GEDGTLICRANGNPKPSISWLTNGVPIEIAPTDPSRKVDGDTIIFSKVQERSSAVYQCNASNEYGYLLANAFVNVL 76 (76)
T ss_pred CCCEEEEEEeeEeCCCeEEEEECCEEccccCCCceEEecCCEEEECCCCHhhCEEEEEEEEcCCCEEEEEEEEEeC
Confidence 788999999999999999999999988532 2233345689999999999999999999999999999998873
No 30
>cd05894 Ig_C5_MyBP-C C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C). Ig_C5_MyBP_C : the C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C). MyBP_C consists of repeated domains, Ig and fibronectin type 3, and various linkers. Three isoforms of MYBP_C exist and are included in this group: cardiac(c), and fast and slow skeletal muscle (s) MyBP_C. cMYBP_C has insertions between and inside domains and an additional cardiac-specific Ig domain at the N-terminus. For cMYBP_C an interaction has been demonstrated between this C5 domain and the Ig C8 domain.
Probab=99.49 E-value=2.9e-13 Score=104.60 Aligned_cols=78 Identities=28% Similarity=0.488 Sum_probs=67.0
Q ss_pred ceEEEcCCeEEEEEEEeccCCCeEEEEeCCccCCCC--CeEEcc---cceEEEccCCCCCCeEEEEEEEeCCceEEEEEE
Q psy15127 80 DATVLSGSVVEFVCRVGGDPLPTILWRRDDGKMPTG--RAKILD---DRSLQIENVGPQDEGLYICDVENLVGSISLRAS 154 (633)
Q Consensus 80 ~~~~~~G~~~~L~C~~~~~p~p~i~W~~~~~~i~~~--~~~~~~---~~~L~i~~v~~~d~G~Y~C~~~n~~g~~s~~~~ 154 (633)
.+.+.+|+.+.|.|.+.|.|.|.+.|+|++.++... +..... .+.|.|.++..+|+|.|+|.|.|..|..+..+.
T Consensus 4 ~~~v~~G~~v~l~c~~~G~P~P~v~W~k~~~~i~~~~~r~~~~~~~~~~~L~I~~~~~~D~G~Y~c~a~N~~G~~~~~~~ 83 (86)
T cd05894 4 TIVVVAGNKLRLDVPISGEPAPTVTWSRGDKAFTETEGRVRVESYKDLSSFVIEGAEREDEGVYTITVTNPVGEDHASLF 83 (86)
T ss_pred EEEEEcCCEEEEEeeEeecCCCeEEEEECCEECccCCCeEEEEEcCCeEEEEECCCccCcCEEEEEEEEeCCCcEEEEEE
Confidence 467899999999999999999999999999988643 333322 357999999999999999999999999888888
Q ss_pred EEE
Q psy15127 155 LTV 157 (633)
Q Consensus 155 l~V 157 (633)
|.|
T Consensus 84 l~V 86 (86)
T cd05894 84 VKV 86 (86)
T ss_pred EEC
Confidence 765
No 31
>cd04973 Ig1_FGFR First immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Ig1_FGFR: The first immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for all FGFs.
Probab=99.49 E-value=2e-13 Score=103.93 Aligned_cols=79 Identities=24% Similarity=0.477 Sum_probs=67.0
Q ss_pred CCceEEEcCCeEEEEEEEeccCCCeEEEEeCCccCCCCCeEEcccceEEEccCCCCCCeEEEEEEEeCCceEEEEEEEEE
Q psy15127 78 PSDATVLSGSVVEFVCRVGGDPLPTILWRRDDGKMPTGRAKILDDRSLQIENVGPQDEGLYICDVENLVGSISLRASLTV 157 (633)
Q Consensus 78 ~~~~~~~~G~~~~L~C~~~~~p~p~i~W~~~~~~i~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~n~~g~~s~~~~l~V 157 (633)
|.+..+.+|+.++|.|.+.+. .+.+.|+|+|.++..+......+..|.|.+++.+|+|.|+|.|.|..|.....+.|.|
T Consensus 1 ~~~~~~~~G~~v~l~C~~~~~-~~~v~W~k~g~~l~~~~~~~~~~~~L~I~~~~~~DsG~Y~C~a~n~~g~~~~~~~v~V 79 (79)
T cd04973 1 VESYSAHPGDLLQLRCRLRDD-VQSINWTKDGVQLGENNRTRITGEEVQIKDAVPRDSGLYACVTSSPSGSDTTYFSVNV 79 (79)
T ss_pred CCcEEecCCCCEEEEEEecCC-CceEEEeeCCcCCCCCceEEEeCCEEEECCCChhhCEEEEEEEeCCCCcccEEEEEeC
Confidence 567789999999999999886 5689999999998765444445678999999999999999999999988777776654
No 32
>cd05859 Ig4_PDGFR-alpha Fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha. IG4_PDGFR-alpha: The fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha. PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFR alpha binds to all three PDGFs, whereas the PDGFR beta (not included in this group) binds only to PDGF-B. PDGF alpha is organized as an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFR alpha and PDGFR beta are essential for normal development.
Probab=99.49 E-value=3e-13 Score=107.60 Aligned_cols=79 Identities=24% Similarity=0.289 Sum_probs=68.1
Q ss_pred ceEEEcCCeEEEEEEEeccCCCeEEEEeCCccCCCCCeEEc----------ccceEEEccCCCCCCeEEEEEEEeCCceE
Q psy15127 80 DATVLSGSVVEFVCRVGGDPLPTILWRRDDGKMPTGRAKIL----------DDRSLQIENVGPQDEGLYICDVENLVGSI 149 (633)
Q Consensus 80 ~~~~~~G~~~~L~C~~~~~p~p~i~W~~~~~~i~~~~~~~~----------~~~~L~i~~v~~~d~G~Y~C~~~n~~g~~ 149 (633)
...+..|+.+.|.|.+.|.|.|.+.|+|+|.++..+..... ..+.|.|.+++.+|+|.|+|.|.|..|..
T Consensus 12 ~~~~~~~~~~~l~~~v~g~P~P~v~W~kdg~~l~~~~~~~~~~~~~~~~~~~~s~L~I~~v~~~D~G~Ytc~A~N~~g~~ 91 (101)
T cd05859 12 LEFANLHEVKEFVVEVEAYPPPQIRWLKDNRTLIENLTEITTSEHNVQETRYVSKLKLIRAKEEDSGLYTALAQNEDAVK 91 (101)
T ss_pred eEEEecCCcEEEEEEEEEeCCCceEEEECCEECcCCcceEEeccccccceeeccEEEEeeCCHHHCEEEEEEEEcCCceE
Confidence 56788899999999999999999999999999875532221 12589999999999999999999999999
Q ss_pred EEEEEEEEE
Q psy15127 150 SLRASLTVH 158 (633)
Q Consensus 150 s~~~~l~V~ 158 (633)
+.++.|.|.
T Consensus 92 ~~t~~l~V~ 100 (101)
T cd05859 92 SYTFALQIQ 100 (101)
T ss_pred EEEEEEEEE
Confidence 999988875
No 33
>cd05740 Ig_CEACAM_D4 Fourth immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM). Ig_CEACAM_D4: immunoglobulin (Ig)-like domain 4 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the
Probab=99.49 E-value=3.2e-13 Score=105.44 Aligned_cols=86 Identities=27% Similarity=0.416 Sum_probs=71.1
Q ss_pred CCeeeeC--CCceEEEcCCeEEEEEEEeccCCCeEEEEeCCccCCCCCeEEc-ccceEEEccCCCCCCeEEEEEEEeCCc
Q psy15127 71 KPFPISE--PSDATVLSGSVVEFVCRVGGDPLPTILWRRDDGKMPTGRAKIL-DDRSLQIENVGPQDEGLYICDVENLVG 147 (633)
Q Consensus 71 ~p~~~~~--~~~~~~~~G~~~~L~C~~~~~p~p~i~W~~~~~~i~~~~~~~~-~~~~L~i~~v~~~d~G~Y~C~~~n~~g 147 (633)
+|.|... +.++.+.+|++++|.|.+.|. .|.|+|+|++..+..++.... .++.|.|.+++.+|+|.|+|.|.|..|
T Consensus 1 ~p~~~~~~~~~~~~v~~g~~v~l~C~a~g~-~p~i~W~kng~~l~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G 79 (91)
T cd05740 1 KPVINSNNSVGNQPPEDNQPVTLTCEAEGQ-ATYIWWVNNGSLLVPPRLQLSNDNRTLTFNNVTRSDTGHYQCEASNEVS 79 (91)
T ss_pred CCEeecccccCccccccCCcEEEEEEeCCC-CCEEEEEECCEECCCCCEEEeCCCCEEEECcCChhhCEEEEEEEEcCCC
Confidence 3566433 446789999999999999999 999999999998876664443 346899999999999999999999999
Q ss_pred e-EEEEEEEEE
Q psy15127 148 S-ISLRASLTV 157 (633)
Q Consensus 148 ~-~s~~~~l~V 157 (633)
. .+..+.|.|
T Consensus 80 ~~~S~~~~L~V 90 (91)
T cd05740 80 NMTSDPYILNV 90 (91)
T ss_pred CEEeeeEEEEe
Confidence 7 566777776
No 34
>cd05863 Ig2_VEGFR-3 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3). Ig2_VEGFR-3: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-3 (Flt-4) binds two members of the VEGF family (VEGF-C and -D) and is involved in tumor angiogenesis and growth.
Probab=99.49 E-value=1.8e-13 Score=99.00 Aligned_cols=66 Identities=26% Similarity=0.385 Sum_probs=57.3
Q ss_pred EEEEEEEeccCCCeEEEEeCCccCCCCCeEEcccceEEEccCCCCCCeEEEEEEEeCCceEEEEEEEEEE
Q psy15127 89 VEFVCRVGGDPLPTILWRRDDGKMPTGRAKILDDRSLQIENVGPQDEGLYICDVENLVGSISLRASLTVH 158 (633)
Q Consensus 89 ~~L~C~~~~~p~p~i~W~~~~~~i~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~n~~g~~s~~~~l~V~ 158 (633)
++|.|.+.|.|.|.++|+|||.++... ...+.|.|.++..+|+|.|+|.|.|..|..++.+.|.|.
T Consensus 1 ~~l~c~v~g~P~P~v~W~kdg~~l~~~----~~~~~L~i~~v~~~D~G~YtC~a~N~~g~~~~~~~~~l~ 66 (67)
T cd05863 1 VKLPVKVAAYPPPEFQWYKDGKLISGK----HSQHSLQIKDVTEASAGTYTLVLWNSAAGLEKRISLELI 66 (67)
T ss_pred CEEEEEEEEeCCCEEEEEECCEECccc----CCcCEEEECCCCHHHCEEEEEEEEECCccEEEEEEEEEE
Confidence 479999999999999999999988632 134689999999999999999999999988777777764
No 35
>cd05869 Ig5_NCAM-1 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). Ig5_NCAM-1: The fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM) and heterophilic (NCAM-non-NCAM) interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (tr
Probab=99.49 E-value=3.2e-13 Score=107.59 Aligned_cols=87 Identities=24% Similarity=0.460 Sum_probs=71.1
Q ss_pred CCeeeeCCCceEEEcCCeEEEEEEEeccCCCeEEEEeCCccCCCC------CeEEcc---cceEEEccCCCCCCeEEEEE
Q psy15127 71 KPFPISEPSDATVLSGSVVEFVCRVGGDPLPTILWRRDDGKMPTG------RAKILD---DRSLQIENVGPQDEGLYICD 141 (633)
Q Consensus 71 ~p~~~~~~~~~~~~~G~~~~L~C~~~~~p~p~i~W~~~~~~i~~~------~~~~~~---~~~L~i~~v~~~d~G~Y~C~ 141 (633)
+|.|...+....+..|+.++|.|.+.|.|.|.++|++++..+... +..... .+.|.|.+++.+|+|.|+|.
T Consensus 2 ~p~i~~~~~~~~~~~g~~v~l~C~~~G~P~P~v~W~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~I~~v~~~D~G~Y~C~ 81 (97)
T cd05869 2 KPKITYVENQTAMELEEQITLTCEASGDPIPSITWRTSTRNISSEEKTLDGHIVVRSHARVSSLTLKYIQYTDAGEYLCT 81 (97)
T ss_pred CceEEEccCceEEEcCCCEEEEEEeeEeCCCEEEEEECCccccCCccccCccEEEEcCccEEEEEEecCccCcCEEEEEE
Confidence 678877776666667899999999999999999999998776432 222222 25899999999999999999
Q ss_pred EEeCCceEEEEEEEEE
Q psy15127 142 VENLVGSISLRASLTV 157 (633)
Q Consensus 142 ~~n~~g~~s~~~~l~V 157 (633)
|.|..|..+..+.|.|
T Consensus 82 A~N~~G~~~~~~~l~v 97 (97)
T cd05869 82 ASNTIGQDSQSMYLEV 97 (97)
T ss_pred EecCCCCeeEEEEEEC
Confidence 9999999988888875
No 36
>cd05730 Ig3_NCAM-1_like Third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). Ig3_NCAM-1_like: domain similar to the third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1,and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the
Probab=99.48 E-value=3.8e-13 Score=107.01 Aligned_cols=89 Identities=27% Similarity=0.433 Sum_probs=73.0
Q ss_pred CCeeeeCC--CceEEEcCCeEEEEEEEeccCCCeEEEEeCCccCCCC-CeE-Ecc-cceEEEccCCCCCCeEEEEEEEeC
Q psy15127 71 KPFPISEP--SDATVLSGSVVEFVCRVGGDPLPTILWRRDDGKMPTG-RAK-ILD-DRSLQIENVGPQDEGLYICDVENL 145 (633)
Q Consensus 71 ~p~~~~~~--~~~~~~~G~~~~L~C~~~~~p~p~i~W~~~~~~i~~~-~~~-~~~-~~~L~i~~v~~~d~G~Y~C~~~n~ 145 (633)
||.|...+ .+..+..|+++.|.|.+.|.|.|.+.|+|+|..+... ... ... .+.|.|.+++.+|+|.|+|.|.|.
T Consensus 1 pp~i~~~~~~~~~~~~~G~~v~L~C~~~g~P~p~v~W~k~g~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~ 80 (95)
T cd05730 1 PPTIRARQSEVNATANLGQSVTLACDADGFPEPTMTWTKDGEPIESGEEKYSFNEDGSEMTILDVDKLDEAEYTCIAENK 80 (95)
T ss_pred CCccccCCcccceEEeCCCCEEEEEeccEeCCCEEEEEECCEECcCCCCEEEEeCCCCEEEECCCChhhCEEEEEEEEcC
Confidence 45555544 3457899999999999999999999999999988654 222 222 357999999999999999999999
Q ss_pred CceEEEEEEEEEEe
Q psy15127 146 VGSISLRASLTVHL 159 (633)
Q Consensus 146 ~g~~s~~~~l~V~~ 159 (633)
.|..+..+.|.|..
T Consensus 81 ~G~~~~~~~L~V~~ 94 (95)
T cd05730 81 AGEQEAEIHLKVFA 94 (95)
T ss_pred CCeEEEEEEEEEEe
Confidence 99999999988864
No 37
>cd05850 Ig1_Contactin-2 First Ig domain of contactin-2. Ig1_Contactin-2: First Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c
Probab=99.48 E-value=5.8e-13 Score=105.07 Aligned_cols=85 Identities=27% Similarity=0.397 Sum_probs=69.1
Q ss_pred CCeeeeCCCceEEEcC---CeEEEEEEEeccCCCeEEEEeCCccCCC--CCeEEcccceEEEccCC-CCCCeEEEEEEEe
Q psy15127 71 KPFPISEPSDATVLSG---SVVEFVCRVGGDPLPTILWRRDDGKMPT--GRAKILDDRSLQIENVG-PQDEGLYICDVEN 144 (633)
Q Consensus 71 ~p~~~~~~~~~~~~~G---~~~~L~C~~~~~p~p~i~W~~~~~~i~~--~~~~~~~~~~L~i~~v~-~~d~G~Y~C~~~n 144 (633)
.|.|..+|.++.+.+| ++++|.|.+.|+|.|.|+|+++|..+.. +......++.|.|.++. ..|+|.|+|.|.|
T Consensus 1 ~P~f~~~P~~~~~~~~~~g~~v~l~C~a~g~P~p~i~W~~~g~~l~~~~~~~~~~~~g~L~I~~~~~~~D~G~Y~C~A~N 80 (94)
T cd05850 1 GPVFEEQPSSLLFPEGSPEEKVTLGCRARASPPATYRWKMNGTEIKFAPESRYTLVAGNLVINNPQKARDAGSYQCLAIN 80 (94)
T ss_pred CCeeEECCCCEEecCCCCCCeEEEEeEceeCCCCEEEEEECCEECccCCCceEEEECCeEEEccCCccCcCEEEEEEEEc
Confidence 3788899999887676 5899999999999999999999998853 23344456789998865 6999999999999
Q ss_pred CCceE-EEEEEE
Q psy15127 145 LVGSI-SLRASL 155 (633)
Q Consensus 145 ~~g~~-s~~~~l 155 (633)
..|.. ++.+.|
T Consensus 81 ~~G~~~s~~a~l 92 (94)
T cd05850 81 RCGTVVSREANL 92 (94)
T ss_pred CcCcEEEEEEEE
Confidence 99985 455554
No 38
>cd05745 Ig3_Peroxidasin Third immunoglobulin (Ig)-like domain of peroxidasin. Ig3_Peroxidasin: the third immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells which have undergone programmed cell death, and protection of the organism against non-self.
Probab=99.48 E-value=2.1e-13 Score=102.60 Aligned_cols=74 Identities=35% Similarity=0.547 Sum_probs=63.6
Q ss_pred CCceEEEEEEEeeecCCeeEEEECCEEEEeccCCccceEEEccCceEEEcCCCCCCCeEEEEEEEeCCceeEEEEEEEE
Q psy15127 254 HPRVNRLSCFAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQV 332 (633)
Q Consensus 254 ~g~~~~l~C~~~g~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v 332 (633)
+|+++.|.|.+.|.|.|.+.|+|+|..+.. ..+.....++.|.|.++..+|.|.|+|.|.|..|..+.++.|.|
T Consensus 1 eG~~v~l~C~~~g~P~p~i~W~k~g~~~~~-----~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~~L~V 74 (74)
T cd05745 1 EGQTVDFLCEAQGYPQPVIAWTKGGSQLSV-----DRRHLVLSSGTLRISRVALHDQGQYECQAVNIVGSQRTVAQLTV 74 (74)
T ss_pred CCCeEEEEeECCEecCCEEEEEECCEECCC-----CCCeEEccCCeEEEeeCCHHhCEEEEEEEEeCCCceeEEEEEeC
Confidence 478999999999999999999999987642 12344556779999999999999999999999999999888764
No 39
>cd05865 Ig1_NCAM-1 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. Ig1_NCAM-1: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (trans
Probab=99.48 E-value=5.1e-13 Score=105.13 Aligned_cols=83 Identities=25% Similarity=0.459 Sum_probs=67.6
Q ss_pred eeCCCceEEEcCCeEEEEEEEeccCC-CeEEEEe-CCccCCC-C-CeEEcc----cceEEEccCCCCCCeEEEEEEEeCC
Q psy15127 75 ISEPSDATVLSGSVVEFVCRVGGDPL-PTILWRR-DDGKMPT-G-RAKILD----DRSLQIENVGPQDEGLYICDVENLV 146 (633)
Q Consensus 75 ~~~~~~~~~~~G~~~~L~C~~~~~p~-p~i~W~~-~~~~i~~-~-~~~~~~----~~~L~i~~v~~~d~G~Y~C~~~n~~ 146 (633)
...|....+.+|++++|.|.+.|.|. |.++|++ ++..+.. + +..... .++|.|.+++.+|+|.|+|.|.|..
T Consensus 4 ~~~p~~~~v~~G~~v~l~C~v~G~P~~p~i~W~~~~g~~l~~~~~r~~v~~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~ 83 (96)
T cd05865 4 DIVPSQGEISVGESKFFLCQVAGEAKDKDISWFSPNGEKLTPNQQRISVVRNDDYSSTLTIYNANIDDAGIYKCVVSNED 83 (96)
T ss_pred EEeCCccEECCCCeEEEEEEEeCCCCCCEEEEECCCCcCccccCCeEEEEeCCCCceEEEEeccChhhCEEEEEEEEcCC
Confidence 45677788999999999999999985 6999998 7776654 3 222222 2589999999999999999999997
Q ss_pred -ceEEEEEEEEE
Q psy15127 147 -GSISLRASLTV 157 (633)
Q Consensus 147 -g~~s~~~~l~V 157 (633)
|..++++.|.|
T Consensus 84 ~g~~~~s~~l~v 95 (96)
T cd05865 84 EGESEATVNVKI 95 (96)
T ss_pred CCcEEEEEEEEE
Confidence 77888888876
No 40
>cd04976 Ig2_VEGFR Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR). Ig2_VEGFR: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A. VEGFR-1 may play an inhibitory part in these processes by binding VEGF and interfering with its interaction with VEGFR-2. VEGFR-1 has a signa
Probab=99.48 E-value=2.6e-13 Score=100.70 Aligned_cols=70 Identities=23% Similarity=0.368 Sum_probs=61.8
Q ss_pred EEEEEEEeccCCCeEEEEeCCccCCCCCeEEcccceEEEccCCCCCCeEEEEEEEeCCceEEEEEEEEEE
Q psy15127 89 VEFVCRVGGDPLPTILWRRDDGKMPTGRAKILDDRSLQIENVGPQDEGLYICDVENLVGSISLRASLTVH 158 (633)
Q Consensus 89 ~~L~C~~~~~p~p~i~W~~~~~~i~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~n~~g~~s~~~~l~V~ 158 (633)
+.|.|.+.|.|.|.++|+|+|..+..+.......++|.|.+++.+|+|.|+|.|.|..|..+..+.+.|.
T Consensus 1 ~~l~c~v~g~P~p~v~W~k~g~~l~~~~~~~~~~~~L~I~~v~~~D~G~YtC~a~N~~g~~~~~~~~~~~ 70 (71)
T cd04976 1 VRLPVKVKAYPPPEIQWYKNGKLISEKNRTKKSGHSLTIKDVTEEDAGNYTVVLTNKQAKLEKRLTFTLV 70 (71)
T ss_pred CEEEeEEEEeCCCEEEEEECCEECCCCCEEEcCCCEEEECcCCHHHCEEEEEEEEcCCccEEEEEEEEEE
Confidence 4699999999999999999999997766666667899999999999999999999999988777777664
No 41
>cd04972 Ig_TrkABC_d4 Fourth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC. TrkABC_d4: the fourth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor fo
Probab=99.48 E-value=3.5e-13 Score=105.78 Aligned_cols=84 Identities=26% Similarity=0.499 Sum_probs=70.4
Q ss_pred eeeCCCceEEEcCCeEEEEEEEeccCCCeEEEEeCCccCCCCCeEE----cccceEEEccCCCCCCeEEEEEEEeCCceE
Q psy15127 74 PISEPSDATVLSGSVVEFVCRVGGDPLPTILWRRDDGKMPTGRAKI----LDDRSLQIENVGPQDEGLYICDVENLVGSI 149 (633)
Q Consensus 74 ~~~~~~~~~~~~G~~~~L~C~~~~~p~p~i~W~~~~~~i~~~~~~~----~~~~~L~i~~v~~~d~G~Y~C~~~n~~g~~ 149 (633)
++..|.+..+.+|+.+.|.|.+.|.|.|.+.|++++..+...+... .....|.|.++..+|.|.|+|.|.|..|..
T Consensus 3 ~v~~p~~~~v~~G~~v~l~C~~~G~P~p~v~W~~~g~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~g~Y~C~A~N~~G~~ 82 (90)
T cd04972 3 PVDGPNATVVYEGGTATIRCTAEGSPLPKVEWIIAGLIVIQTRTDTLETTVDIYNLQLSNITSETQTTVTCTAENPVGQA 82 (90)
T ss_pred cccCCcCEEEcCCCcEEEEEEEEEcCCCeEEEEECCEEccCCccEEEEecCCEEEEEEecCCcccCEEEEEEEECCCCce
Confidence 3455667779999999999999999999999999999876543221 223589999999999999999999999998
Q ss_pred EEEEEEEE
Q psy15127 150 SLRASLTV 157 (633)
Q Consensus 150 s~~~~l~V 157 (633)
...+.|.|
T Consensus 83 ~~~~~L~v 90 (90)
T cd04972 83 NVSVQVTV 90 (90)
T ss_pred eEEEEEeC
Confidence 88888764
No 42
>cd05848 Ig1_Contactin-5 First Ig domain of contactin-5. Ig1_Contactin-5: First Ig domain of the neural cell adhesion molecule contactin-5. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains, anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. In rats, a lack of contactin-5 (NB-2) results in an impairment of the neuronal activity in the auditory system. Contactin-5 is expressed specifically in the postnatal nervous system, peaking at about 3 weeks postnatal. Contactin-5 is highly expressed in the adult human brain in the occipital lobe and in the amygdala; lower levels of expression have been detected in the corpus callosum, caudate nucleus, and spinal cord.
Probab=99.47 E-value=5.3e-13 Score=105.21 Aligned_cols=84 Identities=36% Similarity=0.527 Sum_probs=68.0
Q ss_pred CeeeeCCCceEEE---cCCeEEEEEEEeccCCCeEEEEeCCccCCCC--CeEEcccceEEEccCC-CCCCeEEEEEEEeC
Q psy15127 72 PFPISEPSDATVL---SGSVVEFVCRVGGDPLPTILWRRDDGKMPTG--RAKILDDRSLQIENVG-PQDEGLYICDVENL 145 (633)
Q Consensus 72 p~~~~~~~~~~~~---~G~~~~L~C~~~~~p~p~i~W~~~~~~i~~~--~~~~~~~~~L~i~~v~-~~d~G~Y~C~~~n~ 145 (633)
|.|+..|.++.+. +|+.++|.|.+.|.|.|.|+|+|+|..+... ......++.|.|.++. .+|+|.|+|.|.|.
T Consensus 2 P~f~~~p~~~~~~~~~~g~~v~l~C~~~G~P~P~i~W~k~g~~l~~~~~~~~~~~~g~L~i~~~~~~~D~G~Y~C~A~N~ 81 (94)
T cd05848 2 PVFVQEPDDAIFPTDSDEKKVILNCEARGNPVPTYRWLRNGTEIDTESDYRYSLIDGNLIISNPSEVKDSGRYQCLATNS 81 (94)
T ss_pred CeeEECCCcEEccCCCCCCEEEEEEEeeecCCCEEEEEECCeECccCCCceEEeeCCeEEEccCCccCcCEEEEEEEEcC
Confidence 7888888887654 4789999999999999999999999988542 2334456789999985 69999999999999
Q ss_pred CceE-EEEEEE
Q psy15127 146 VGSI-SLRASL 155 (633)
Q Consensus 146 ~g~~-s~~~~l 155 (633)
.|.. +..+.|
T Consensus 82 ~G~~~S~~~~l 92 (94)
T cd05848 82 IGSILSREALL 92 (94)
T ss_pred CCeEEeccEEE
Confidence 9985 444443
No 43
>cd05725 Ig3_Robo Third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Ig3_Robo: domain similar to the third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni
Probab=99.47 E-value=2.2e-13 Score=100.98 Aligned_cols=69 Identities=64% Similarity=1.177 Sum_probs=62.5
Q ss_pred EEEEEEEeccCCCeEEEEeCCccCCCCCeEEcccceEEEccCCCCCCeEEEEEEEeCCceEEEEEEEEE
Q psy15127 89 VEFVCRVGGDPLPTILWRRDDGKMPTGRAKILDDRSLQIENVGPQDEGLYICDVENLVGSISLRASLTV 157 (633)
Q Consensus 89 ~~L~C~~~~~p~p~i~W~~~~~~i~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~n~~g~~s~~~~l~V 157 (633)
++|.|.+.|.|.|.+.|+|++..+...+.....++.|.|.+++.+|+|.|+|.|.|..|..+..+.|.|
T Consensus 1 v~l~C~~~g~P~p~v~W~k~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V 69 (69)
T cd05725 1 VEFQCEVGGDPVPTVLWRKEDGELPKGRAEILDDKSLKIRNVTAGDEGSYTCEAENMVGKIEASASLTV 69 (69)
T ss_pred CEEEEECccCCCCEEEEEECCccCCCCcEEEeeCCEEEECcCChhHCEEEEEEEEcCCCcEEEEEEEEC
Confidence 479999999999999999999888777777777889999999999999999999999999888888765
No 44
>cd05849 Ig1_Contactin-1 First Ig domain of contactin-1. Ig1_Contactin-1: First Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may, through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.
Probab=99.47 E-value=5.3e-13 Score=104.66 Aligned_cols=85 Identities=28% Similarity=0.484 Sum_probs=68.7
Q ss_pred CCeeeeCCCceEEEcCC---eEEEEEEEeccCCCeEEEEeCCccCCC-CCeEEcccceEEEccCC-CCCCeEEEEEEEeC
Q psy15127 71 KPFPISEPSDATVLSGS---VVEFVCRVGGDPLPTILWRRDDGKMPT-GRAKILDDRSLQIENVG-PQDEGLYICDVENL 145 (633)
Q Consensus 71 ~p~~~~~~~~~~~~~G~---~~~L~C~~~~~p~p~i~W~~~~~~i~~-~~~~~~~~~~L~i~~v~-~~d~G~Y~C~~~n~ 145 (633)
.|.|..+|.+..+.++. .+.|.|.+.|.|.|.|+|+|++..+.. .......++.|.|.++. .+|+|.|+|.|.|.
T Consensus 1 ~P~f~~~P~~~~~~~~~~~~~v~l~C~a~G~P~P~i~W~k~~~~i~~~~~~~~~~~g~L~I~~~~~~~D~G~Y~C~A~N~ 80 (93)
T cd05849 1 GPVFEEQPIDTIYPEESTEGKVSVNCRARANPFPIYKWRKNNLDIDLTNDRYSMVGGNLVINNPDKYKDAGRYVCIVSNI 80 (93)
T ss_pred CCEEEECCCCEEecCCccCCeEEEeCcCccCCCCEEEEEECCEEccCCCCeEEEECCEEEECcCCcCCCCEEEEEEEEeC
Confidence 47888888887665544 899999999999999999999988753 33344557899999985 68999999999999
Q ss_pred CceE-EEEEEE
Q psy15127 146 VGSI-SLRASL 155 (633)
Q Consensus 146 ~g~~-s~~~~l 155 (633)
.|.. +..+.|
T Consensus 81 ~G~~~s~~a~l 91 (93)
T cd05849 81 YGKVRSREATL 91 (93)
T ss_pred cceEEEccEEE
Confidence 9985 445554
No 45
>cd05870 Ig5_NCAM-2 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM). Ig5_NCAM-2: the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.
Probab=99.47 E-value=3.8e-13 Score=107.43 Aligned_cols=86 Identities=26% Similarity=0.580 Sum_probs=69.5
Q ss_pred CCeeeeCCCceEEEcCCeEEEEEEEeccCCCeEEEEeC--CccCC------CCCeEEcc---cceEEEccCCCCCCeEEE
Q psy15127 71 KPFPISEPSDATVLSGSVVEFVCRVGGDPLPTILWRRD--DGKMP------TGRAKILD---DRSLQIENVGPQDEGLYI 139 (633)
Q Consensus 71 ~p~~~~~~~~~~~~~G~~~~L~C~~~~~p~p~i~W~~~--~~~i~------~~~~~~~~---~~~L~i~~v~~~d~G~Y~ 139 (633)
+|.|.. +.+..+.+|++++|.|.+.|.|.|.|+|+|+ +..+. .++..... ...|.|.+++.+|+|.|+
T Consensus 2 ~p~i~~-~~~~~~~~G~~v~l~C~~~G~P~p~i~W~k~~~g~~~~~~~~~~~~r~~v~~~~~~~~L~I~~v~~~D~G~Y~ 80 (98)
T cd05870 2 QPHIIQ-LKNETTVENGAATLSCKAEGEPIPEITWKRASDGHTFSEGDKSPDGRIEVKGQHGESSLHIKDVKLSDSGRYD 80 (98)
T ss_pred CCEEEe-eccEEEcCCCcEEEEEecccCCCCeEEEEECCCCceeccCCcCcCceEEEeecCCeeEEEEeeCCcCCCEEEE
Confidence 577754 7789999999999999999999999999994 33332 12333322 358999999999999999
Q ss_pred EEEEeCCceEEEEEEEEE
Q psy15127 140 CDVENLVGSISLRASLTV 157 (633)
Q Consensus 140 C~~~n~~g~~s~~~~l~V 157 (633)
|.|.|..|..+..+.|.|
T Consensus 81 C~A~N~~G~~~~~~~l~~ 98 (98)
T cd05870 81 CEAASRIGGHQKSMYLDI 98 (98)
T ss_pred EEEeccCCcceeEEEEeC
Confidence 999999999888887764
No 46
>cd05893 Ig_Palladin_C C-terminal immunoglobulin (Ig)-like domain of palladin. Ig_Palladin_C: C-terminal immunoglobulin (Ig)-like domain of palladin. Palladin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to this family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Palladin binds to alpha-actinin ezrin, vasodilator-stimulated phosphoprotein VASP, SPIN90 (DIP, mDia interacting protein), and Src. Palladin also binds F-actin directly, via its Ig3 domain. Palladin is expressed as several alternatively spliced isoforms, having various combinations of Ig-like domains, in a cell-type-specific manner. It has been suggested that palladin's different Ig-like domains may be specialized for distinct functions.
Probab=99.47 E-value=2.5e-13 Score=101.60 Aligned_cols=69 Identities=32% Similarity=0.640 Sum_probs=58.6
Q ss_pred EEEEEEEeccCCCeEEEEeCCccCCCC--CeEEcccc----eEEEccCCCCCCeEEEEEEEeCCceEEEEEEEEE
Q psy15127 89 VEFVCRVGGDPLPTILWRRDDGKMPTG--RAKILDDR----SLQIENVGPQDEGLYICDVENLVGSISLRASLTV 157 (633)
Q Consensus 89 ~~L~C~~~~~p~p~i~W~~~~~~i~~~--~~~~~~~~----~L~i~~v~~~d~G~Y~C~~~n~~g~~s~~~~l~V 157 (633)
++|.|.+.|.|.|.|+|+|++..+..+ +.....+. .|.|.+++.+|+|.|+|.|.|..|..+..+.|.|
T Consensus 1 v~l~C~v~G~P~P~v~W~k~~~~l~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~a~L~V 75 (75)
T cd05893 1 VRLECRVSGVPHPQIFWKKENESLTHNTDRVSMHQDNCGYICLLIQGATKEDAGWYTVSAKNEAGIVSCTARLDV 75 (75)
T ss_pred CEEEEEEeEecCCEEEEEECCEECCCCCCeEEEEEcCCCEEEEEECCCCHHHCEEEEEEEEcCCCEEEEEEEEeC
Confidence 579999999999999999999988643 33333332 6999999999999999999999999999888875
No 47
>cd05723 Ig4_Neogenin Fourth immunoglobulin (Ig)-like domain in neogenin and similar proteins. Ig4_Neogenin: fourth immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.
Probab=99.47 E-value=4.3e-13 Score=99.78 Aligned_cols=70 Identities=34% Similarity=0.610 Sum_probs=61.0
Q ss_pred eEEEEEEEeccCCCeEEEEeCCccCCCC-CeEEcccceEEEccCCCCCCeEEEEEEEeCCceEEEEEEEEE
Q psy15127 88 VVEFVCRVGGDPLPTILWRRDDGKMPTG-RAKILDDRSLQIENVGPQDEGLYICDVENLVGSISLRASLTV 157 (633)
Q Consensus 88 ~~~L~C~~~~~p~p~i~W~~~~~~i~~~-~~~~~~~~~L~i~~v~~~d~G~Y~C~~~n~~g~~s~~~~l~V 157 (633)
++.|.|.+.|.|.|.++|+|++..+... +.....++.|.|.+++.+|+|.|+|.|.|..|..+..+.|.|
T Consensus 1 ~v~l~C~~~G~P~p~v~W~k~g~~~~~~~~~~~~~~~~l~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~L~V 71 (71)
T cd05723 1 DVIFECEVTGKPTPTVKWVKNGDMVIPSDYFKIVKEHNLQVLGLVKSDEGFYQCIAENDVGNVQASAQLII 71 (71)
T ss_pred CEEEEEEEEEeCCCEEEEEECCeECCCCCCEEEEecCCEEEEcCCcccCEEEEEEEEcCCCEEEEEEEEEC
Confidence 4789999999999999999999887543 445556678999999999999999999999999998888865
No 48
>cd07693 Ig1_Robo First immunoglobulin (Ig)-like domain in Robo (roundabout) receptors and similar proteins. Ig1_Robo: domain similar to the first immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit res
Probab=99.47 E-value=5e-13 Score=107.92 Aligned_cols=87 Identities=34% Similarity=0.597 Sum_probs=70.0
Q ss_pred CCeeeeCCCceEEEcCCeEEEEEEEeccCCCeEEEEeCCccCCC------CCeEEcccceEEEc-----cCCCCCCeEEE
Q psy15127 71 KPFPISEPSDATVLSGSVVEFVCRVGGDPLPTILWRRDDGKMPT------GRAKILDDRSLQIE-----NVGPQDEGLYI 139 (633)
Q Consensus 71 ~p~~~~~~~~~~~~~G~~~~L~C~~~~~p~p~i~W~~~~~~i~~------~~~~~~~~~~L~i~-----~v~~~d~G~Y~ 139 (633)
+|.|...|.+..+.+|+.+.|.|.+.|.|.|.++|+|+|..+.. .+.....++.+.+. .++.+|+|.|+
T Consensus 1 ~P~i~~~p~~~~v~~G~~~~l~C~~~g~P~p~i~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~D~G~Y~ 80 (100)
T cd07693 1 PPRIVEHPSDLIVSKGDPATLNCKAEGRPTPTIQWLKNGQPLETDKDDPRSHRIVLPSGSLFFLRVVHGRKGRSDEGVYV 80 (100)
T ss_pred CCeEEecCceeEEcCCCeEEEEeeCCcCCCCEEEEEECCEECccccCCCCcceEEecCCcEEEEEeeccCCCcCcCEEEE
Confidence 58899999999999999999999999999999999999998754 12233334433222 23689999999
Q ss_pred EEEEeCCce-EEEEEEEEE
Q psy15127 140 CDVENLVGS-ISLRASLTV 157 (633)
Q Consensus 140 C~~~n~~g~-~s~~~~l~V 157 (633)
|.|.|..|. .++.+.|.|
T Consensus 81 C~a~N~~G~~~s~~~~l~v 99 (100)
T cd07693 81 CVAHNSLGEAVSRNASLEV 99 (100)
T ss_pred EEEEccccceecceEEEEe
Confidence 999999998 677777776
No 49
>cd04969 Ig5_Contactin_like Fifth Ig domain of contactin. Ig5_Contactin_like: Fifth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week
Probab=99.46 E-value=4.7e-13 Score=100.40 Aligned_cols=72 Identities=38% Similarity=0.582 Sum_probs=63.7
Q ss_pred CCeEEEEEEEeccCCCeEEEEeCCccCCCC-CeEEcccceEEEccCCCCCCeEEEEEEEeCCceEEEEEEEEE
Q psy15127 86 GSVVEFVCRVGGDPLPTILWRRDDGKMPTG-RAKILDDRSLQIENVGPQDEGLYICDVENLVGSISLRASLTV 157 (633)
Q Consensus 86 G~~~~L~C~~~~~p~p~i~W~~~~~~i~~~-~~~~~~~~~L~i~~v~~~d~G~Y~C~~~n~~g~~s~~~~l~V 157 (633)
|+.+.|.|.+.|.|.|.++|+|++..+... +.....++.|.|.+++.+|+|.|+|.|.|..|..+..+.|.|
T Consensus 1 G~~v~L~C~~~g~P~p~v~W~k~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V 73 (73)
T cd04969 1 GGDVIIECKPKAAPKPTISWSKGTELLTNSSRICIWPDGSLEILNVTKSDEGKYTCFAENFFGKANSTGSLSV 73 (73)
T ss_pred CCeEEEEEeeeEcCCCEEEEEECCEEcccCCCEEECCCCeEEEccCChhHCEEEEEEEECCCCceEEEEEEEC
Confidence 788999999999999999999999988543 555556688999999999999999999999999988888765
No 50
>cd04978 Ig4_L1-NrCAM_like Fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related). Ig4_L1-NrCAM_like: fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related). These proteins belong to the L1 subfamily of cell adhesion molecules (CAMs) and are comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. These molecules are primarily expressed in the nervous system. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.
Probab=99.46 E-value=5.8e-13 Score=101.13 Aligned_cols=72 Identities=29% Similarity=0.525 Sum_probs=63.3
Q ss_pred CCeEEEEEEEeccCCCeEEEEeCCccCCCCC---eEEcccceEEEccCCCCCCeEEEEEEEeCCceEEEEEEEEE
Q psy15127 86 GSVVEFVCRVGGDPLPTILWRRDDGKMPTGR---AKILDDRSLQIENVGPQDEGLYICDVENLVGSISLRASLTV 157 (633)
Q Consensus 86 G~~~~L~C~~~~~p~p~i~W~~~~~~i~~~~---~~~~~~~~L~i~~v~~~d~G~Y~C~~~n~~g~~s~~~~l~V 157 (633)
|+.++|.|.+.|.|.|.|.|+++|..+.... ......+.|.|.+++.+|+|.|+|.|.|..|...+.+.|.|
T Consensus 1 G~~~~l~C~~~g~P~p~i~W~~~g~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~V 75 (76)
T cd04978 1 GETGRLDCEAEGIPQPTITWRLNGVPIEELPPDPRRRVDGGTLILSNVQPNDTAVYQCNASNVHGYLLANAFVHV 75 (76)
T ss_pred CCeEEEEEEceeeCCCEEEEEECCEECCCCCCcceEEccCCEEEECCCChhhCEEEEEEEEccCCeEEEeEEEEE
Confidence 7899999999999999999999999885432 34445689999999999999999999999999998888877
No 51
>cd05739 Ig3_RPTP_IIa_LAR_like Third immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. Ig3_RPTP_IIa_LAR_like: domain similar to the third immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple IG-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains. Included in this group is Drosophila LAR (DLAR).
Probab=99.45 E-value=6.6e-13 Score=97.62 Aligned_cols=68 Identities=21% Similarity=0.464 Sum_probs=57.7
Q ss_pred CCeEEEEEEEeccCCCeEEEEeCCccCCCCCeEEcccceEEEccCCCCCCeEEEEEEEeCCceEEEEEEE
Q psy15127 86 GSVVEFVCRVGGDPLPTILWRRDDGKMPTGRAKILDDRSLQIENVGPQDEGLYICDVENLVGSISLRASL 155 (633)
Q Consensus 86 G~~~~L~C~~~~~p~p~i~W~~~~~~i~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~n~~g~~s~~~~l 155 (633)
|++++|.|.+.|.|.|.|+|+|++..+............|.|.+++ |+|.|+|.|.|..|..+..+.|
T Consensus 1 G~~v~L~C~a~G~P~P~v~W~k~g~~l~~~~~~~~~~~~L~i~~~~--d~G~Y~C~A~N~~G~~~~~a~l 68 (69)
T cd05739 1 GGSVNLTCVAVGAPMPYVKWMKGGEELTKEDEMPVGRNVLELTNIY--ESANYTCVAISSLGMIEATAQV 68 (69)
T ss_pred CCeEEEEEEeeecCCCEEEEEECCEECCCccceecCccEEEEeccc--cCeeEEEEEEeCCCEEEEEEEE
Confidence 6889999999999999999999999886554444445689999974 8999999999999998877766
No 52
>cd05735 Ig8_DSCAM Eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM). Ig8_DSCAM: the eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.
Probab=99.45 E-value=6.6e-13 Score=103.21 Aligned_cols=75 Identities=25% Similarity=0.376 Sum_probs=64.9
Q ss_pred CCeEEEEEEEeccCCCeEEEEeCCccCCCC--CeEEcc----c---ceEEEccCCCCCCeEEEEEEEeCCceEEEEEEEE
Q psy15127 86 GSVVEFVCRVGGDPLPTILWRRDDGKMPTG--RAKILD----D---RSLQIENVGPQDEGLYICDVENLVGSISLRASLT 156 (633)
Q Consensus 86 G~~~~L~C~~~~~p~p~i~W~~~~~~i~~~--~~~~~~----~---~~L~i~~v~~~d~G~Y~C~~~n~~g~~s~~~~l~ 156 (633)
|+.++|.|.+.|.|.+.++|+|++..+... ++.+.. + +.|.|.++..+|+|.|+|.|.|..|..+..+.|.
T Consensus 1 g~~~~l~C~~~g~p~~~i~W~k~~~~i~~~~~r~~~~~~~~~~~~~s~L~I~~~~~~D~G~YtC~A~N~~G~~~~~~~L~ 80 (88)
T cd05735 1 GQKKEMSCTAHGEKPIIVRWEKEDRIINPEMSRYLVSTKEVGDEVISTLQILPTVREDSGFFSCHAINSYGEDRGIIQLT 80 (88)
T ss_pred CCeEEEEEEEECCCCCEEEEeeCCEECCCCCCcEEEEEecCCCcEEEEEEECCCCcccCEEEEEEEEcCCCcceEEEEEE
Confidence 789999999999999999999999888542 333221 1 5799999999999999999999999999999999
Q ss_pred EEee
Q psy15127 157 VHLL 160 (633)
Q Consensus 157 V~~~ 160 (633)
|..+
T Consensus 81 V~~~ 84 (88)
T cd05735 81 VQEP 84 (88)
T ss_pred EeCC
Confidence 9986
No 53
>cd05892 Ig_Myotilin_C C-terminal immunoglobulin (Ig)-like domain of myotilin. Ig_Myotilin_C: C-terminal immunoglobulin (Ig)-like domain of myotilin. Mytolin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to the latter family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Myotilin is most abundant in skeletal and cardiac muscle, and is involved in maintaining sarcomere integrity. It binds to alpha-actinin, filamin and actin. Mutations in myotilin lead to muscle disorders.
Probab=99.44 E-value=8.2e-13 Score=98.58 Aligned_cols=71 Identities=34% Similarity=0.583 Sum_probs=58.4
Q ss_pred EEEEEEEeeecCCeeEEEECCEEEEeccCCccceEEEc--cCc--eEEEcCCCCCCCeEEEEEEEeCCceeEEEEEEEE
Q psy15127 258 NRLSCFAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVT--QEG--TLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQV 332 (633)
Q Consensus 258 ~~l~C~~~g~p~~~v~W~~~g~~~~~~~~~~~~~~~~~--~~~--~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v 332 (633)
+.|.|.+.|.|.|.+.|+|+|..+... ..++.+. ..+ +|.|.++..+|+|.|+|.|.|..|..+.++.|.|
T Consensus 1 v~l~C~v~G~P~P~i~W~k~~~~i~~~----~~r~~~~~~~~g~~~L~I~~~~~~D~G~Y~C~A~N~~G~~~~~a~L~V 75 (75)
T cd05892 1 VKLECQISAIPPPKIFWKRNNEMVQYN----TDRISLYQDNSGRVTLLIKNVNKKDAGWYTVSAVNEAGVATCHARLDV 75 (75)
T ss_pred CEEEEEEEecCCCeEEEEECCEECcCC----CCeEEEEEcCCCcEEEEECCCChhhCEEEEEEEEcCcCeEEEEEEEeC
Confidence 479999999999999999999877421 1244432 222 7999999999999999999999999999988865
No 54
>cd05722 Ig1_Neogenin First immunoglobulin (Ig)-like domain in neogenin and similar proteins. Ig1_Neogenin: first immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.
Probab=99.44 E-value=8.9e-13 Score=104.73 Aligned_cols=84 Identities=40% Similarity=0.624 Sum_probs=70.6
Q ss_pred eeeCCCceEEEcCCeEEEEEEEeccCCCeEEEEeCCccCCCC---CeEEcccceEEEccC-----CCCCCeEEEEEEEeC
Q psy15127 74 PISEPSDATVLSGSVVEFVCRVGGDPLPTILWRRDDGKMPTG---RAKILDDRSLQIENV-----GPQDEGLYICDVENL 145 (633)
Q Consensus 74 ~~~~~~~~~~~~G~~~~L~C~~~~~p~p~i~W~~~~~~i~~~---~~~~~~~~~L~i~~v-----~~~d~G~Y~C~~~n~ 145 (633)
|...|.+..+.+|+++.|.|.+.|.|.|.++|+|+|..+... +.....++.|.|.++ +.+|+|.|+|.|.|.
T Consensus 2 f~~~P~~~~~~~g~~v~l~C~v~g~P~p~i~W~k~g~~l~~~~~~~~~~~~~~~l~i~~v~~~~~~~~D~G~Y~C~a~N~ 81 (95)
T cd05722 2 FLSEPSDIVAVRGGPVVLNCSAEGEPPPKIEWKKDGVLLNLVSDERRQQLPNGSLLITSVVHSKHNKPDEGFYQCVAQND 81 (95)
T ss_pred cEECCCCeEEcCCCCEEEeeecccCCCCEEEEEECCeECccccCcceEEccCCeEEEeeeeccCCCCCcCEEEEEEEECC
Confidence 567888999999999999999999999999999999988643 244556677888877 589999999999999
Q ss_pred -CceE-EEEEEEEE
Q psy15127 146 -VGSI-SLRASLTV 157 (633)
Q Consensus 146 -~g~~-s~~~~l~V 157 (633)
.|.. +..+.|.|
T Consensus 82 ~~G~~~s~~~~l~v 95 (95)
T cd05722 82 SLGSIVSRTARLTV 95 (95)
T ss_pred ccCcEEEeeeEEeC
Confidence 8885 77777764
No 55
>cd05732 Ig5_NCAM-1_like Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM) and similar proteins. Ig5_NCAM-1 like: domain similar to the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM mole
Probab=99.44 E-value=1.1e-12 Score=104.61 Aligned_cols=86 Identities=28% Similarity=0.503 Sum_probs=70.7
Q ss_pred CCeeeeCCCceEEEcCCeEEEEEEEeccCCCeEEEEeCCccCCCC------CeEEcc---cceEEEccCCCCCCeEEEEE
Q psy15127 71 KPFPISEPSDATVLSGSVVEFVCRVGGDPLPTILWRRDDGKMPTG------RAKILD---DRSLQIENVGPQDEGLYICD 141 (633)
Q Consensus 71 ~p~~~~~~~~~~~~~G~~~~L~C~~~~~p~p~i~W~~~~~~i~~~------~~~~~~---~~~L~i~~v~~~d~G~Y~C~ 141 (633)
+|.|. .+.+..+.+|+.+.|.|.+.|.|.|.+.|++++..+... +..... .+.|.|.+++.+|+|.|+|.
T Consensus 2 ~P~i~-~~~~~~~~~g~~v~l~C~~~g~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~ 80 (96)
T cd05732 2 QPKIT-YLENQTAVELEQITLTCEAEGDPIPEITWRRATRNFSEGDKSLDGRIVVRGHARVSSLTLKDVQLTDAGRYDCE 80 (96)
T ss_pred Cccce-ecCceeEecCCcEEEEEEEeEcCCCcEEEEECCcccCCCCccccceEEEeCCccEEEEEECcCCcCcCEEeEEE
Confidence 67775 566788999999999999999999999999998766432 222222 25899999999999999999
Q ss_pred EEeCCceEEEEEEEEE
Q psy15127 142 VENLVGSISLRASLTV 157 (633)
Q Consensus 142 ~~n~~g~~s~~~~l~V 157 (633)
|.|..|..+..+.|.|
T Consensus 81 a~N~~G~~~~s~~l~v 96 (96)
T cd05732 81 ASNRIGGDQQSMYLEV 96 (96)
T ss_pred EEeCCCCcEEEEEEeC
Confidence 9999999888887764
No 56
>cd05893 Ig_Palladin_C C-terminal immunoglobulin (Ig)-like domain of palladin. Ig_Palladin_C: C-terminal immunoglobulin (Ig)-like domain of palladin. Palladin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to this family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Palladin binds to alpha-actinin ezrin, vasodilator-stimulated phosphoprotein VASP, SPIN90 (DIP, mDia interacting protein), and Src. Palladin also binds F-actin directly, via its Ig3 domain. Palladin is expressed as several alternatively spliced isoforms, having various combinations of Ig-like domains, in a cell-type-specific manner. It has been suggested that palladin's different Ig-like domains may be specialized for distinct functions.
Probab=99.43 E-value=9.2e-13 Score=98.50 Aligned_cols=71 Identities=37% Similarity=0.622 Sum_probs=58.5
Q ss_pred EEEEEEEeeecCCeeEEEECCEEEEeccCCccceEEEccCc----eEEEcCCCCCCCeEEEEEEEeCCceeEEEEEEEE
Q psy15127 258 NRLSCFAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEG----TLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQV 332 (633)
Q Consensus 258 ~~l~C~~~g~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~~~----~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v 332 (633)
+.|.|.+.|.|.|.+.|+|++..+.. ...++....+. .|.|.++..+|+|.|+|.|.|..|..+.++.|.|
T Consensus 1 v~l~C~v~G~P~P~v~W~k~~~~l~~----~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~a~L~V 75 (75)
T cd05893 1 VRLECRVSGVPHPQIFWKKENESLTH----NTDRVSMHQDNCGYICLLIQGATKEDAGWYTVSAKNEAGIVSCTARLDV 75 (75)
T ss_pred CEEEEEEeEecCCEEEEEECCEECCC----CCCeEEEEEcCCCEEEEEECCCCHHHCEEEEEEEEcCCCEEEEEEEEeC
Confidence 47999999999999999999987742 12344443322 6999999999999999999999999999988864
No 57
>cd05723 Ig4_Neogenin Fourth immunoglobulin (Ig)-like domain in neogenin and similar proteins. Ig4_Neogenin: fourth immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.
Probab=99.43 E-value=1.2e-12 Score=97.44 Aligned_cols=71 Identities=28% Similarity=0.557 Sum_probs=60.2
Q ss_pred eEEEEEEEeeecCCeeEEEECCEEEEeccCCccceEEEccCceEEEcCCCCCCCeEEEEEEEeCCceeEEEEEEEE
Q psy15127 257 VNRLSCFAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQV 332 (633)
Q Consensus 257 ~~~l~C~~~g~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v 332 (633)
++.|.|.+.|.|.|.++|+|+|..+. ...+.....++.|.|.++..+|.|.|+|.|.|..|..+.++.|.|
T Consensus 1 ~v~l~C~~~G~P~p~v~W~k~g~~~~-----~~~~~~~~~~~~l~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~L~V 71 (71)
T cd05723 1 DVIFECEVTGKPTPTVKWVKNGDMVI-----PSDYFKIVKEHNLQVLGLVKSDEGFYQCIAENDVGNVQASAQLII 71 (71)
T ss_pred CEEEEEEEEEeCCCEEEEEECCeECC-----CCCCEEEEecCCEEEEcCCcccCEEEEEEEEcCCCEEEEEEEEEC
Confidence 47899999999999999999998764 123345556678999999999999999999999999999888764
No 58
>cd05726 Ig4_Robo Fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Ig4_Robo: domain similar to the fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni
Probab=99.43 E-value=1e-12 Score=103.07 Aligned_cols=75 Identities=35% Similarity=0.665 Sum_probs=65.0
Q ss_pred CCeEEEEEEEeccCCCeEEEEeCCccC---------CCCCeEEcccceEEEccCCCCCCeEEEEEEEeCCceEEEEEEEE
Q psy15127 86 GSVVEFVCRVGGDPLPTILWRRDDGKM---------PTGRAKILDDRSLQIENVGPQDEGLYICDVENLVGSISLRASLT 156 (633)
Q Consensus 86 G~~~~L~C~~~~~p~p~i~W~~~~~~i---------~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~n~~g~~s~~~~l~ 156 (633)
|++++|.|.+.|.|.|.+.|+|++..+ ...++....++.|+|.+++.+|+|.|+|.|.|..|.....+.|.
T Consensus 1 G~~v~L~C~~~g~P~p~v~W~k~g~~~~~~~~~~~~~~~r~~v~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~ 80 (90)
T cd05726 1 GRTVTFQCEATGNPQPAIFWQKEGSQNLLFSYQPPQSSSRFSVSQTGDLTITNVQRSDVGYYICQTLNVAGSILTKAYLE 80 (90)
T ss_pred CCEEEEEEECCccCCCEEEEEeCCCcceeecccCCCCCCeEEECCCCeEEEeeCChhhCEEEEEEEEcCCCceEEEEEEE
Confidence 789999999999999999999988643 12344555567899999999999999999999999999999999
Q ss_pred EEee
Q psy15127 157 VHLL 160 (633)
Q Consensus 157 V~~~ 160 (633)
|...
T Consensus 81 V~~~ 84 (90)
T cd05726 81 VTDV 84 (90)
T ss_pred Eeec
Confidence 9875
No 59
>cd05867 Ig4_L1-CAM_like Fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). Ig4_L1-CAM_like: fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.
Probab=99.43 E-value=2.1e-12 Score=97.63 Aligned_cols=75 Identities=27% Similarity=0.483 Sum_probs=62.4
Q ss_pred CceEEEEEEEeeecCCeeEEEECCEEEEeccCCccceEEEccCceEEEcCCCCCCCeEEEEEEEeCCceeEEEEEEEE
Q psy15127 255 PRVNRLSCFAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQV 332 (633)
Q Consensus 255 g~~~~l~C~~~g~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v 332 (633)
|+++.|.|.+.|.|.|+++|+++|..+.... ...+.. ..++.|.|.++..+|+|.|+|.|.|..|.....+.|.|
T Consensus 1 G~~v~l~C~~~G~P~p~i~W~k~g~~i~~~~--~~~~~~-~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~V 75 (76)
T cd05867 1 GETARLDCQVEGIPTPNITWSINGAPIEGTD--PDPRRH-VSSGALILTDVQPSDTAVYQCEARNRHGNLLANAHVHV 75 (76)
T ss_pred CCeEEEEEEeeEeCCCeEEEEECCEECCCCC--CCceEE-eeCCEEEECCCChhhCEEEEEEEECCCCeEEEEEEEEE
Confidence 5789999999999999999999998764211 112332 34678999999999999999999999999999888876
No 60
>cd05724 Ig2_Robo Second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Ig2_Robo: domain similar to the second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antago
Probab=99.42 E-value=1.4e-12 Score=101.82 Aligned_cols=81 Identities=40% Similarity=0.679 Sum_probs=67.9
Q ss_pred CCCceEEEcCCeEEEEEEE-eccCCCeEEEEeCCccCCC--CCeEEcccceEEEccCCCCCCeEEEEEEEeCCceE-EEE
Q psy15127 77 EPSDATVLSGSVVEFVCRV-GGDPLPTILWRRDDGKMPT--GRAKILDDRSLQIENVGPQDEGLYICDVENLVGSI-SLR 152 (633)
Q Consensus 77 ~~~~~~~~~G~~~~L~C~~-~~~p~p~i~W~~~~~~i~~--~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~n~~g~~-s~~ 152 (633)
.|.+..+.+|+++.|.|.+ .+.|.|.+.|+|++..+.. .+.....++.|.|.+++.+|+|.|+|.|.|..|.. +..
T Consensus 2 ~p~~~~~~~G~~v~l~C~~~~g~p~p~i~W~k~g~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~s~~ 81 (86)
T cd05724 2 EPSDTQVAVGEMAVLECSPPRGHPEPTVSWRKDGQPLNLDNERVRIVDDGNLLIAEARKSDEGTYKCVATNMVGERESAA 81 (86)
T ss_pred CCccEEEeCCCCEEEEEECCCCCCCCEEEEEECCEECCCCCCCEEEccCCEEEEeECCcccCEEEEEEEEeccCceeeee
Confidence 5678889999999999998 6899999999999988764 34455556799999999999999999999999874 556
Q ss_pred EEEEE
Q psy15127 153 ASLTV 157 (633)
Q Consensus 153 ~~l~V 157 (633)
+.|.|
T Consensus 82 ~~l~V 86 (86)
T cd05724 82 ARLSV 86 (86)
T ss_pred EEEEC
Confidence 65543
No 61
>cd05876 Ig3_L1-CAM Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). Ig3_L1-CAM: third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.
Probab=99.42 E-value=9.3e-13 Score=97.96 Aligned_cols=70 Identities=34% Similarity=0.657 Sum_probs=60.2
Q ss_pred EEEEEEEeccCCCeEEEEeCCccCCCCCeE-EcccceEEEccCCCCCCeEEEEEEEeCCceEEEEEEEEEE
Q psy15127 89 VEFVCRVGGDPLPTILWRRDDGKMPTGRAK-ILDDRSLQIENVGPQDEGLYICDVENLVGSISLRASLTVH 158 (633)
Q Consensus 89 ~~L~C~~~~~p~p~i~W~~~~~~i~~~~~~-~~~~~~L~i~~v~~~d~G~Y~C~~~n~~g~~s~~~~l~V~ 158 (633)
+.|.|.+.|.|.|.+.|+|++..+..++.. ....++|.|.+++.+|+|.|+|.|.|..|..+..+.|.|.
T Consensus 1 ~~L~C~~~G~P~P~v~W~k~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~Ve 71 (71)
T cd05876 1 LVLECIAEGLPTPEVHWDRIDGPLSPNRTKKLNNNKTLQLDNVLESDDGEYVCTAENSEGSARHHYTVTVE 71 (71)
T ss_pred CEEEEEeeEecCCeEEEEECCcCCCCCceeEEcCCCEEEEcccCHHhCEEEEEEEEcCCCeEEEEEEEEEC
Confidence 479999999999999999999877654333 3346799999999999999999999999999888888773
No 62
>cd05863 Ig2_VEGFR-3 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3). Ig2_VEGFR-3: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-3 (Flt-4) binds two members of the VEGF family (VEGF-C and -D) and is involved in tumor angiogenesis and growth.
Probab=99.42 E-value=1.2e-12 Score=94.79 Aligned_cols=66 Identities=20% Similarity=0.305 Sum_probs=56.7
Q ss_pred EEEEEEEeeecCCeeEEEECCEEEEeccCCccceEEEccCceEEEcCCCCCCCeEEEEEEEeCCceeEEEEEEEEE
Q psy15127 258 NRLSCFAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVR 333 (633)
Q Consensus 258 ~~l~C~~~g~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~ 333 (633)
++|.|.+.|.|+|.+.|+|||..+.. ....+.|.|.++..+|+|.|+|.|.|..|..+.+..+++.
T Consensus 1 ~~l~c~v~g~P~P~v~W~kdg~~l~~----------~~~~~~L~i~~v~~~D~G~YtC~a~N~~g~~~~~~~~~l~ 66 (67)
T cd05863 1 VKLPVKVAAYPPPEFQWYKDGKLISG----------KHSQHSLQIKDVTEASAGTYTLVLWNSAAGLEKRISLELI 66 (67)
T ss_pred CEEEEEEEEeCCCEEEEEECCEECcc----------cCCcCEEEECCCCHHHCEEEEEEEEECCccEEEEEEEEEE
Confidence 47999999999999999999998741 1134589999999999999999999999988888777764
No 63
>cd05864 Ig2_VEGFR-2 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2). Ig2_VEGF-2: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-2 (KDR/Flk-1) is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF-A also interacts with VEGFR-1, which it binds more strongly than VEGFR-2. VEGFR-2 and -1 may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.
Probab=99.42 E-value=9.1e-13 Score=96.74 Aligned_cols=68 Identities=19% Similarity=0.312 Sum_probs=57.0
Q ss_pred EEEEEEEeccCCCeEEEEeCCccCCCCCeEEcccceEEEccCCCCCCeEEEEEEEeCCceEEEEEEEEE
Q psy15127 89 VEFVCRVGGDPLPTILWRRDDGKMPTGRAKILDDRSLQIENVGPQDEGLYICDVENLVGSISLRASLTV 157 (633)
Q Consensus 89 ~~L~C~~~~~p~p~i~W~~~~~~i~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~n~~g~~s~~~~l~V 157 (633)
+.|.|.+.|.|.|.++|+|+|.++..... ...+..|.|.++..+|+|.|+|.|.|..|..+....+.+
T Consensus 1 ~~~~c~v~G~P~P~v~W~k~g~~l~~~~~-~~~~~~L~I~~v~~~D~G~YtC~a~N~~G~~~~~~t~~l 68 (70)
T cd05864 1 VKIPVKYYGYPPPEVKWYKNGQLIVLNHT-FKRGVHLTIYEVTEKDAGNYTVVLTNPITKEEQRHTFQL 68 (70)
T ss_pred CEEEeEEEEeCCCEEEEEECCEECCCCCE-EccCCEEEECcCCHHHCEEEEEEEEECCCceeeEEEEEE
Confidence 46899999999999999999999876533 334568999999999999999999999997666555554
No 64
>cd05853 Ig6_Contactin-4 Sixth Ig domain of contactin-4. Ig6_Contactin-4: sixth Ig domain of the neural cell adhesion molecule contactin-4. Contactins are neural cell adhesion molecules, and are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. Highest expresson of contactin-4 is in testes, thyroid, small intestine, uterus and brain. Contactin-4 plays a role in the response of neuroblastoma cells to differentiating agents, such as retinoids. The contactin 4 gene is associated with cerebellar degeneration in spinocerebellar ataxia type 16.
Probab=99.42 E-value=9.3e-13 Score=100.07 Aligned_cols=74 Identities=22% Similarity=0.333 Sum_probs=62.3
Q ss_pred CeEEEEEEEecc--CCCeEEEEeCCccCCC---C-CeEEc----ccceEEEccCCCCCCeEEEEEEEeCCceEEEEEEEE
Q psy15127 87 SVVEFVCRVGGD--PLPTILWRRDDGKMPT---G-RAKIL----DDRSLQIENVGPQDEGLYICDVENLVGSISLRASLT 156 (633)
Q Consensus 87 ~~~~L~C~~~~~--p~p~i~W~~~~~~i~~---~-~~~~~----~~~~L~i~~v~~~d~G~Y~C~~~n~~g~~s~~~~l~ 156 (633)
+++.|.|.+.+. +.+.|.|+|||.+|.. + ++... .++.|.|.+++..|+|+|+|.|+|..+..++.+.|.
T Consensus 1 ~~~~l~C~v~~d~~l~~~~~W~~dg~~i~~~~~~~~~~~~~~~~~~~~L~I~nv~~~dsG~YtC~a~n~~~~~~a~a~L~ 80 (85)
T cd05853 1 ESIVLPCQVSHDHSLDIVFTWSFNGHLIDFQKDGDHFERVGGQDSAGDLMIRSIQLKHAGKYVCMVQTSVDKLSAAADLI 80 (85)
T ss_pred CcEEEEEEeccCCCCCcEEEEEECCEECcccCCCccEEEeccCCCCCcEEEecCCHHHCEEEEEEEEcccCceEEEEEEE
Confidence 468999999764 4678999999999852 2 33331 346899999999999999999999999999999999
Q ss_pred EEee
Q psy15127 157 VHLL 160 (633)
Q Consensus 157 V~~~ 160 (633)
|.+|
T Consensus 81 V~~p 84 (85)
T cd05853 81 VRGP 84 (85)
T ss_pred EecC
Confidence 9987
No 65
>cd05894 Ig_C5_MyBP-C C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C). Ig_C5_MyBP_C : the C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C). MyBP_C consists of repeated domains, Ig and fibronectin type 3, and various linkers. Three isoforms of MYBP_C exist and are included in this group: cardiac(c), and fast and slow skeletal muscle (s) MyBP_C. cMYBP_C has insertions between and inside domains and an additional cardiac-specific Ig domain at the N-terminus. For cMYBP_C an interaction has been demonstrated between this C5 domain and the Ig C8 domain.
Probab=99.42 E-value=2.3e-12 Score=99.53 Aligned_cols=80 Identities=21% Similarity=0.404 Sum_probs=66.0
Q ss_pred eEEecCCceEEEEEEEeeecCCeeEEEECCEEEEeccCCccceEEEc---cCceEEEcCCCCCCCeEEEEEEEeCCceeE
Q psy15127 249 LLIWNHPRVNRLSCFAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVT---QEGTLRIQGVQKEDAGFFVCSALSVAGSTT 325 (633)
Q Consensus 249 ~~~~~~g~~~~l~C~~~g~p~~~v~W~~~g~~~~~~~~~~~~~~~~~---~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~ 325 (633)
.+.+..|+.+.|.|.+.|.|.|.+.|++++..+... ..++... ..+.|.|.++..+|+|.|+|.|.|..|..+
T Consensus 4 ~~~v~~G~~v~l~c~~~G~P~P~v~W~k~~~~i~~~----~~r~~~~~~~~~~~L~I~~~~~~D~G~Y~c~a~N~~G~~~ 79 (86)
T cd05894 4 TIVVVAGNKLRLDVPISGEPAPTVTWSRGDKAFTET----EGRVRVESYKDLSSFVIEGAEREDEGVYTITVTNPVGEDH 79 (86)
T ss_pred EEEEEcCCEEEEEeeEeecCCCeEEEEECCEECccC----CCeEEEEEcCCeEEEEECCCccCcCEEEEEEEEeCCCcEE
Confidence 356678999999999999999999999999987522 1233332 245799999999999999999999999999
Q ss_pred EEEEEEE
Q psy15127 326 VRAFLQV 332 (633)
Q Consensus 326 ~~~~l~v 332 (633)
.++.|.|
T Consensus 80 ~~~~l~V 86 (86)
T cd05894 80 ASLFVKV 86 (86)
T ss_pred EEEEEEC
Confidence 8887764
No 66
>cd05854 Ig6_Contactin-2 Sixth Ig domain of contactin-2. Ig6_Contactin-2: Sixth Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c
Probab=99.42 E-value=1.3e-12 Score=100.75 Aligned_cols=74 Identities=26% Similarity=0.363 Sum_probs=62.3
Q ss_pred CeEEEEEEEeccCCC--eEEEEeCCccCCCC----CeEEc----ccceEEEccCCCCCCeEEEEEEEeCCceEEEEEEEE
Q psy15127 87 SVVEFVCRVGGDPLP--TILWRRDDGKMPTG----RAKIL----DDRSLQIENVGPQDEGLYICDVENLVGSISLRASLT 156 (633)
Q Consensus 87 ~~~~L~C~~~~~p~p--~i~W~~~~~~i~~~----~~~~~----~~~~L~i~~v~~~d~G~Y~C~~~n~~g~~s~~~~l~ 156 (633)
++++|.|.+.|.|.| .+.|+|+|..+... +.... ..+.|.|.+++..|+|.|+|.|.|..|..++.+.|.
T Consensus 1 ~~~~L~C~a~g~P~p~~~v~W~~~g~~i~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~YtC~A~n~~g~~~~~~~L~ 80 (85)
T cd05854 1 ENLTLQCHASHDPTMDLTFTWSLDDFPIDLDKPNGHYRRMEVKETIGDLVIVNAQLSHAGTYTCTAQTVVDSASASATLV 80 (85)
T ss_pred CcEEEEEEEecCCCCCeEEEEEECCeEccccCCCCcEEEEEecceEeEEEEccCChhhCeEEEEEEecCCCCEEEEEEEE
Confidence 468999999999887 58999999887532 22111 246899999999999999999999999999999999
Q ss_pred EEee
Q psy15127 157 VHLL 160 (633)
Q Consensus 157 V~~~ 160 (633)
|..+
T Consensus 81 V~~~ 84 (85)
T cd05854 81 VRGP 84 (85)
T ss_pred EECC
Confidence 9976
No 67
>cd05857 Ig2_FGFR Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. Ig2_FGFR: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three IG-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin sulfate proteoglycans.
Probab=99.42 E-value=1.5e-12 Score=101.24 Aligned_cols=77 Identities=34% Similarity=0.551 Sum_probs=65.3
Q ss_pred eEEEcCCeEEEEEEEeccCCCeEEEEeCCccCCCCCeE-----EcccceEEEccCCCCCCeEEEEEEEeCCceEEEEEEE
Q psy15127 81 ATVLSGSVVEFVCRVGGDPLPTILWRRDDGKMPTGRAK-----ILDDRSLQIENVGPQDEGLYICDVENLVGSISLRASL 155 (633)
Q Consensus 81 ~~~~~G~~~~L~C~~~~~p~p~i~W~~~~~~i~~~~~~-----~~~~~~L~i~~v~~~d~G~Y~C~~~n~~g~~s~~~~l 155 (633)
..+.+|+.+.|.|.+.|.|.|.++|+|+|..+..+... ......|.|.+++.+|+|.|+|.|.|..|..+..+.|
T Consensus 4 ~~v~~G~~~~L~C~~~g~P~p~i~W~k~g~~l~~~~~~~~~~~~~~~~~l~i~~~~~~D~G~Y~C~a~N~~G~~~~~~~l 83 (85)
T cd05857 4 HAVPAANTVKFRCPAAGNPTPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSINHTYHL 83 (85)
T ss_pred EEcCCCCEEEEEEEcCCCCCCEEEEEECCEECCCCCceeeeEEeCCceEEEEccCCcccCEEEEEEEEeCCCEEEEEEEE
Confidence 45788999999999999999999999999988654221 1234579999999999999999999999999988888
Q ss_pred EE
Q psy15127 156 TV 157 (633)
Q Consensus 156 ~V 157 (633)
.|
T Consensus 84 ~v 85 (85)
T cd05857 84 DV 85 (85)
T ss_pred EC
Confidence 75
No 68
>cd05868 Ig4_NrCAM Fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule). Ig4_ NrCAM: fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six IG-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. NrCAM is primarily expressed in the nervous system.
Probab=99.42 E-value=1.9e-12 Score=97.66 Aligned_cols=75 Identities=25% Similarity=0.457 Sum_probs=62.2
Q ss_pred CceEEEEEEEeeecCCeeEEEECCEEEEeccCCccceEEEccCceEEEcCCCCCCCeEEEEEEEeCCceeEEEEEEEE
Q psy15127 255 PRVNRLSCFAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQV 332 (633)
Q Consensus 255 g~~~~l~C~~~g~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v 332 (633)
|+++.|.|.+.|+|.|+++|+++|..+...+.. .. .....+.|.|.++...|.|.|+|.|.|..|....++.|.|
T Consensus 1 g~~~~l~C~a~G~P~P~i~W~k~g~~i~~~~~~--~~-~~~~~~~l~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~v 75 (76)
T cd05868 1 GEDGTLICRANGNPKPSISWLTNGVPIEIAPTD--PS-RKVDGDTIIFSKVQERSSAVYQCNASNEYGYLLANAFVNV 75 (76)
T ss_pred CCCEEEEEEeeEeCCCeEEEEECCEEccccCCC--ce-EEecCCEEEECCCCHhhCEEEEEEEEcCCCEEEEEEEEEe
Confidence 578999999999999999999999987532211 11 1224458999999999999999999999999999999887
No 69
>cd05749 Ig2_Tyro3_like Second immunoglobulin (Ig)-like domain of Axl/Tyro3 receptor tyrosine kinases (RTKs). Ig2_Tyro3_like: the second immunoglobulin (Ig)-like domain in the Axl/Tyro3 family of receptor tyrosine kinases (RTKs). This family includes Axl (also known as Ark, Ufo, and Tyro7), Tyro3 (also known as Sky, Rse, Brt, Dtk, and Tif), and Mer (also known as Nyk, c-Eyk, and Tyro12). Axl/Tyro3 family receptors have an extracellular portion with two Ig-like domains followed by two fibronectin-types III (FNIII) domains, a membrane-spanning single helix, and a cytoplasmic tyrosine kinase domain. Axl, Tyro3 and Mer are widely expressed in adult tissues, though they show higher expression in the brain, in the lymphatic and vascular systems, and in the testis. Axl, Tyro3, and Mer bind the vitamin K dependent protein Gas6 with high affinity, and in doing so activate their tyrosine kinase activity. Axl/Gas6 signaling may play a part in cell adhesion processes, prevention of apoptosis, and c
Probab=99.42 E-value=1.1e-12 Score=99.41 Aligned_cols=78 Identities=21% Similarity=0.431 Sum_probs=63.1
Q ss_pred eeeCCCceEEEcCCeEEEEEEEeccCCC-eEEEEeCCccCCCCCeEEcccceEEEccCCCCCCeEEEEEEEeCCceE-EE
Q psy15127 74 PISEPSDATVLSGSVVEFVCRVGGDPLP-TILWRRDDGKMPTGRAKILDDRSLQIENVGPQDEGLYICDVENLVGSI-SL 151 (633)
Q Consensus 74 ~~~~~~~~~~~~G~~~~L~C~~~~~p~p-~i~W~~~~~~i~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~n~~g~~-s~ 151 (633)
|...|.++.+.+|+.+.|.|.+.|.|.| .|.|+|+|.++... .....+.|.|.++ .|+|.|+|.|.|..|.. +.
T Consensus 1 f~~~P~~~~v~~G~~v~l~C~a~G~P~P~~I~W~k~g~~l~~~--~~~~~s~L~i~~~--~d~g~Y~C~A~N~~G~~~s~ 76 (81)
T cd05749 1 FTVEPEDLSVTANTPFNLTCQAVGPPEPVEILWWQGGSPLGDP--PAPSPSVLNVPGL--NETSKFSCEAHNAKGVTTSR 76 (81)
T ss_pred CcCCCCceEEcCCCCEEEEEEeeeecCCeEEEEEECCEECCCC--CCCCCCEEEEccc--cCCeEEEEEEEeccCcEEee
Confidence 4567889999999999999999999999 79999999988641 1123468999887 58899999999999974 34
Q ss_pred EEEE
Q psy15127 152 RASL 155 (633)
Q Consensus 152 ~~~l 155 (633)
.+.|
T Consensus 77 ~a~~ 80 (81)
T cd05749 77 TGTV 80 (81)
T ss_pred eEEe
Confidence 5544
No 70
>cd05735 Ig8_DSCAM Eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM). Ig8_DSCAM: the eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.
Probab=99.41 E-value=2e-12 Score=100.50 Aligned_cols=80 Identities=28% Similarity=0.343 Sum_probs=64.8
Q ss_pred CceEEEEEEEeeecCCeeEEEECCEEEEeccCCccceEEEc----c---CceEEEcCCCCCCCeEEEEEEEeCCceeEEE
Q psy15127 255 PRVNRLSCFAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVT----Q---EGTLRIQGVQKEDAGFFVCSALSVAGSTTVR 327 (633)
Q Consensus 255 g~~~~l~C~~~g~p~~~v~W~~~g~~~~~~~~~~~~~~~~~----~---~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~ 327 (633)
|+.++|.|.+.|.|++.+.|.+++..+.. . ..++.+. . .++|.|.++..+|.|.|+|.|.|..|..+..
T Consensus 1 g~~~~l~C~~~g~p~~~i~W~k~~~~i~~--~--~~r~~~~~~~~~~~~~s~L~I~~~~~~D~G~YtC~A~N~~G~~~~~ 76 (88)
T cd05735 1 GQKKEMSCTAHGEKPIIVRWEKEDRIINP--E--MSRYLVSTKEVGDEVISTLQILPTVREDSGFFSCHAINSYGEDRGI 76 (88)
T ss_pred CCeEEEEEEEECCCCCEEEEeeCCEECCC--C--CCcEEEEEecCCCcEEEEEEECCCCcccCEEEEEEEEcCCCcceEE
Confidence 68899999999999999999999986631 1 1222221 1 1479999999999999999999999999999
Q ss_pred EEEEEEecccC
Q psy15127 328 AFLQVREFCVL 338 (633)
Q Consensus 328 ~~l~v~~~~~~ 338 (633)
+.|.|.+.|..
T Consensus 77 ~~L~V~~~P~~ 87 (88)
T cd05735 77 IQLTVQEPPDP 87 (88)
T ss_pred EEEEEeCCCCC
Confidence 99999875543
No 71
>cd04969 Ig5_Contactin_like Fifth Ig domain of contactin. Ig5_Contactin_like: Fifth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week
Probab=99.41 E-value=1.7e-12 Score=97.40 Aligned_cols=73 Identities=22% Similarity=0.412 Sum_probs=63.7
Q ss_pred CceEEEEEEEeeecCCeeEEEECCEEEEeccCCccceEEEccCceEEEcCCCCCCCeEEEEEEEeCCceeEEEEEEEE
Q psy15127 255 PRVNRLSCFAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQV 332 (633)
Q Consensus 255 g~~~~l~C~~~g~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v 332 (633)
|+.+.|.|.+.|.|.|.++|++++..+. ...+.....++.|.|.+++.+|+|.|+|.|.|..|..+.++.|.|
T Consensus 1 G~~v~L~C~~~g~P~p~v~W~k~~~~~~-----~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V 73 (73)
T cd04969 1 GGDVIIECKPKAAPKPTISWSKGTELLT-----NSSRICIWPDGSLEILNVTKSDEGKYTCFAENFFGKANSTGSLSV 73 (73)
T ss_pred CCeEEEEEeeeEcCCCEEEEEECCEEcc-----cCCCEEECCCCeEEEccCChhHCEEEEEEEECCCCceEEEEEEEC
Confidence 5789999999999999999999998764 224556667789999999999999999999999999999888764
No 72
>cd05744 Ig_Myotilin_C_like Immunoglobulin (Ig)-like domain of myotilin, palladin, and myopalladin. Ig_Myotilin_like_C: immunoglobulin (Ig)-like domain in myotilin, palladin, and myopalladin. Myotilin, palladin, and myopalladin function as scaffolds that regulate actin organization. Myotilin and myopalladin are most abundant in skeletal and cardiac muscle; palladin is ubiquitously expressed in the organs of developing vertebrates and plays a key role in cellular morphogenesis. The three family members each interact with specific molecular partners: all three bind to alpha-actinin; in addition, palladin also binds to vasodilator-stimulated phosphoprotein (VASP) and ezrin, myotilin binds to filamin and actin, and myopalladin also binds to nebulin and cardiac ankyrin repeat protein (CARP).
Probab=99.41 E-value=1.6e-12 Score=97.71 Aligned_cols=69 Identities=32% Similarity=0.594 Sum_probs=58.2
Q ss_pred EEEEEEEeccCCCeEEEEeCCccCCC--CCeEEccc----ceEEEccCCCCCCeEEEEEEEeCCceEEEEEEEEE
Q psy15127 89 VEFVCRVGGDPLPTILWRRDDGKMPT--GRAKILDD----RSLQIENVGPQDEGLYICDVENLVGSISLRASLTV 157 (633)
Q Consensus 89 ~~L~C~~~~~p~p~i~W~~~~~~i~~--~~~~~~~~----~~L~i~~v~~~d~G~Y~C~~~n~~g~~s~~~~l~V 157 (633)
++|.|.+.|.|.|.|.|+|++..+.. .+.....+ .+|.|.+++.+|+|.|+|.|.|..|..+..+.|.|
T Consensus 1 v~L~C~v~G~P~P~v~W~k~~~~i~~~~~r~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~v 75 (75)
T cd05744 1 VRLECRVSAIPPPQIFWKKNNEMLTYNTDRISLYQDNCGRICLLIQNANKEDAGWYTVSAVNEAGVVSCNARLDV 75 (75)
T ss_pred CEEEEEEeecCCCeEEEEECCEECCCCCCcEEEEEcCCCeEEEEECCCCcccCEEEEEEEEcCCCcEEEEEEEeC
Confidence 47999999999999999999998863 23333322 26999999999999999999999999988888865
No 73
>cd05746 Ig4_Peroxidasin Fourth immunoglobulin (Ig)-like domain of peroxidasin. Ig4_Peroxidasin: the fourth immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted, and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells, which have undergone programmed cell death, and protection of the organism against non-self.
Probab=99.41 E-value=9.8e-13 Score=97.26 Aligned_cols=67 Identities=34% Similarity=0.631 Sum_probs=58.7
Q ss_pred EEEEEEEeccCCCeEEEEeCCccCCCC-CeEEcccceEEEccCCCCCCeEEEEEEEeCCceEEEEEEE
Q psy15127 89 VEFVCRVGGDPLPTILWRRDDGKMPTG-RAKILDDRSLQIENVGPQDEGLYICDVENLVGSISLRASL 155 (633)
Q Consensus 89 ~~L~C~~~~~p~p~i~W~~~~~~i~~~-~~~~~~~~~L~i~~v~~~d~G~Y~C~~~n~~g~~s~~~~l 155 (633)
+.|.|.+.|.|.|.++|+|++..+... +.....++.|.|.+++.+|+|.|+|.|.|..|..+..+.|
T Consensus 1 v~L~C~~~g~P~p~i~W~k~g~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~L 68 (69)
T cd05746 1 VQIPCSAQGDPEPTITWNKDGVQVTESGKFHISPEGYLAIRDVGVADQGRYECVARNTIGYASVSMVL 68 (69)
T ss_pred CEeEecceEeCCCEEEEEECCEECCCCCCEEECCCCEEEECcCChhhCEEEEEEEECCCCcEEEEEEe
Confidence 479999999999999999999988654 4455567899999999999999999999999998887766
No 74
>cd05773 Ig8_hNephrin_like Eighth immunoglobulin-like domain of nephrin. Ig8_hNephrin_like: domain similar to the eighth immunoglobulin-like domain in human nephrin. Nephrin is an integral component of the slit diaphragm, and is a central component of the glomerular ultrafilter. Nephrin plays a structural role, and has a role in signaling. Nephrin is a transmembrane protein having a short intracellular portion, and an extracellular portion comprised of eight Ig-like domains, and one fibronectin type III-like domain. The extracellular portions of nephrin, from neighboring foot processes of separate podocyte cells, may interact with each other, and in association with other components of the slit diaphragm, form a porous molecular sieve within the slit pore. The intracellular portion of nephrin is associated with linker proteins, which connect nephrin to the actin cytoskeleton. The intracellular portion is tyrosine phosphorylated, and mediates signaling from the slit diaphragm into the p
Probab=99.40 E-value=2.8e-12 Score=104.03 Aligned_cols=93 Identities=25% Similarity=0.328 Sum_probs=73.4
Q ss_pred cCcCCeeeeCCCceEE-E---cCCeEEEEEEEeccCCCeEEEEeCCccCCCC--CeEEc-------ccceEEEccCC-CC
Q psy15127 68 ALIKPFPISEPSDATV-L---SGSVVEFVCRVGGDPLPTILWRRDDGKMPTG--RAKIL-------DDRSLQIENVG-PQ 133 (633)
Q Consensus 68 v~~~p~~~~~~~~~~~-~---~G~~~~L~C~~~~~p~p~i~W~~~~~~i~~~--~~~~~-------~~~~L~i~~v~-~~ 133 (633)
|.++|.|...|....+ . .|..++|.|.+.|.|.+.+.|+|+|..+... ++... ..+.|+|.++. .+
T Consensus 1 v~~~P~~~~~~~~~~~~~~~~~g~~v~L~C~a~G~P~p~i~W~k~g~~l~~~~~r~~~~~~~~~~~~~s~L~I~~v~~~~ 80 (109)
T cd05773 1 VRFAPDLQKGPQLRKVASRGDGSSDANLVCQAQGVPRVQFRWAKNGVPLDLGNPRYEETTEHTGTVHTSILTIINVSAAL 80 (109)
T ss_pred CccccccccCCceEEEEEecCCCCEEEEEEECcccCCCEEEEEECCEECCCCCCeEEEEeeccCccceeEEEECcCCccC
Confidence 4567888777663322 2 4579999999999999999999999988532 22211 13579999997 59
Q ss_pred CCeEEEEEEEeCCceEEEEEEEEEEee
Q psy15127 134 DEGLYICDVENLVGSISLRASLTVHLL 160 (633)
Q Consensus 134 d~G~Y~C~~~n~~g~~s~~~~l~V~~~ 160 (633)
|.|.|+|.|.|..|..+..+.|.|..+
T Consensus 81 D~G~Y~C~A~N~~G~~~~~i~L~~~~~ 107 (109)
T cd05773 81 DYALFTCTAHNSLGEDSLDIQLVSTSR 107 (109)
T ss_pred CCEEEEEEEEeCCccCcEEEEEEecCC
Confidence 999999999999999999999999876
No 75
>cd05738 Ig2_RPTP_IIa_LAR_like Second immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. Ig2_RPTP_IIa_LAR_like: domain similar to the second immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple Ig-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains.
Probab=99.40 E-value=1.4e-12 Score=97.84 Aligned_cols=70 Identities=37% Similarity=0.587 Sum_probs=59.8
Q ss_pred EEEEEEEeccCCCeEEEEeCCccCC---CCCeEEcccceEEEccCCCCCCeEEEEEEEeCCce-EEEEEEEEEE
Q psy15127 89 VEFVCRVGGDPLPTILWRRDDGKMP---TGRAKILDDRSLQIENVGPQDEGLYICDVENLVGS-ISLRASLTVH 158 (633)
Q Consensus 89 ~~L~C~~~~~p~p~i~W~~~~~~i~---~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~n~~g~-~s~~~~l~V~ 158 (633)
++|.|.+.|.|.|.|+|+|++.++. ..+.....++.|.|.+++.+|+|.|+|.|.|..|. .+..+.|.|.
T Consensus 1 a~l~C~~~G~P~p~v~W~k~~~~~~~~~~~~~~~~~~g~L~i~~~~~~D~G~Y~C~a~N~~G~~~s~~a~l~v~ 74 (74)
T cd05738 1 ATMLCAASGNPDPEITWFKDFLPVDTTSNGRIKQLRSGALQIENSEESDQGKYECVATNSAGTRYSAPANLYVR 74 (74)
T ss_pred CEEEEEEeEecCCEEEEEECCEECccCCCCCEEEcCCcEEEECCCChhhCEEEEEEEECCCCceEcccEEEEEC
Confidence 4799999999999999999998875 23555556778999999999999999999999998 5777887763
No 76
>cd05891 Ig_M-protein_C C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2). Ig_M-protein_C: the C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2). M-protein is a structural protein localized to the M-band, a transverse structure in the center of the sarcomere, and is a candidate for M-band bridges. M-protein is modular consisting mainly of repetitive IG-like and fibronectin type III (FnIII) domains, and has a muscle-type specific expression pattern. M-protein is present in fast fibers.
Probab=99.40 E-value=3e-12 Score=100.58 Aligned_cols=82 Identities=27% Similarity=0.575 Sum_probs=67.9
Q ss_pred eCCCceEEEcCCeEEEEEEEeccCCCeEEEEeCCccCCCCC-eEE-ccc---ceEEEccCCCCCCeEEEEEEEeCCceEE
Q psy15127 76 SEPSDATVLSGSVVEFVCRVGGDPLPTILWRRDDGKMPTGR-AKI-LDD---RSLQIENVGPQDEGLYICDVENLVGSIS 150 (633)
Q Consensus 76 ~~~~~~~~~~G~~~~L~C~~~~~p~p~i~W~~~~~~i~~~~-~~~-~~~---~~L~i~~v~~~d~G~Y~C~~~n~~g~~s 150 (633)
..|..+.+.+|+.+.|.|.+.+.|.|.+.|+|++..+.... +.. ..+ .+|.|.+++.+|+|.|+|.|.|..|...
T Consensus 6 ~~p~~v~v~eG~~v~L~C~v~g~P~p~i~W~k~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~ 85 (92)
T cd05891 6 GLPDVVTIMEGKTLNLTCTVFGNPDPEVIWFKNDQDIELSEHYSVKLEQGKYASLTIKGVTSEDSGKYSINVKNKYGGET 85 (92)
T ss_pred cCCCcEEEcCCCEEEEEEEEEEeCCCeEEEEECCEECCCCCCEEEEEcCCCEEEEEECCCChhhCEEEEEEEEeCCCcee
Confidence 34677889999999999999999999999999998775432 222 111 3799999999999999999999999988
Q ss_pred EEEEEEE
Q psy15127 151 LRASLTV 157 (633)
Q Consensus 151 ~~~~l~V 157 (633)
..+.|.|
T Consensus 86 ~~~~v~~ 92 (92)
T cd05891 86 VDVTVSV 92 (92)
T ss_pred eEEEEEC
Confidence 8877764
No 77
>cd04975 Ig4_SCFR_like Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR) and similar proteins. Ig4_SCFR_like; fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR). In addition to SCFR this group also includes the fourth Ig domain of platelet-derived growth factor receptors (PDGFR), alpha and beta, the fourth Ig domain of macrophage colony stimulating factor (M-CSF), and the Ig domain of the receptor tyrosine kinase KIT. SCFR and the PDGFR alpha and beta have similar organization: an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR, this fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth SCFR_Ig-like domain abolishes
Probab=99.39 E-value=3.3e-12 Score=101.42 Aligned_cols=82 Identities=17% Similarity=0.220 Sum_probs=66.8
Q ss_pred eeEEecCCceEEEEEEEee-ecCCeeEEEECCEEEEeccCCccceEEEc-------cCceEEEcCCCCCCCeEEEEEEEe
Q psy15127 248 SLLIWNHPRVNRLSCFAEG-SPLPSVFWTQEGSQVLMFPGNAYGHLHVT-------QEGTLRIQGVQKEDAGFFVCSALS 319 (633)
Q Consensus 248 ~~~~~~~g~~~~l~C~~~g-~p~~~v~W~~~g~~~~~~~~~~~~~~~~~-------~~~~l~i~~~~~~d~G~Y~C~a~n 319 (633)
..+.+..|+.+.|.|.+.| .|+|.+.|+|||..+... ....... ..+.|.|..+..+|+|.|+|.|.|
T Consensus 11 ~~~~v~~G~~v~L~c~v~g~~P~p~v~W~Kdg~~i~~~----~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Ytc~A~N 86 (101)
T cd04975 11 TTIFVNLGENLNLVVEVEAYPPPPHINWTYDNRTLTNK----LTEIVTSENESEYRYVSELKLVRLKESEAGTYTFLASN 86 (101)
T ss_pred ceEEEECCCCEEEEEEEEecCCCCccEEEeCCeeCCCC----cceeEEEeccCcceEEEEEEEeecCHhhCeeEEEEEEC
Confidence 4567788999999999999 888999999999987521 1111111 135799999999999999999999
Q ss_pred CCceeEEEEEEEEE
Q psy15127 320 VAGSTTVRAFLQVR 333 (633)
Q Consensus 320 ~~g~~~~~~~l~v~ 333 (633)
..|..+.++.|.|.
T Consensus 87 ~~G~~~~t~~L~V~ 100 (101)
T cd04975 87 SDASKSLTFELYVN 100 (101)
T ss_pred CCccEEEEEEEEEE
Confidence 99999999888875
No 78
>cd05730 Ig3_NCAM-1_like Third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). Ig3_NCAM-1_like: domain similar to the third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1,and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the
Probab=99.39 E-value=6.5e-12 Score=99.88 Aligned_cols=86 Identities=24% Similarity=0.336 Sum_probs=69.4
Q ss_pred cccceeEEecCCceEEEEEEEeeecCCeeEEEECCEEEEeccCCccceEEEc-cCceEEEcCCCCCCCeEEEEEEEeCCc
Q psy15127 244 RKMASLLIWNHPRVNRLSCFAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVT-QEGTLRIQGVQKEDAGFFVCSALSVAG 322 (633)
Q Consensus 244 ~~~~~~~~~~~g~~~~l~C~~~g~p~~~v~W~~~g~~~~~~~~~~~~~~~~~-~~~~l~i~~~~~~d~G~Y~C~a~n~~g 322 (633)
...........|+.+.|.|.+.|.|.|.+.|+++|..+... ..++... ..+.|.|.++..+|.|.|+|.|.|..|
T Consensus 7 ~~~~~~~~~~~G~~v~L~C~~~g~P~p~v~W~k~g~~~~~~----~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G 82 (95)
T cd05730 7 RQSEVNATANLGQSVTLACDADGFPEPTMTWTKDGEPIESG----EEKYSFNEDGSEMTILDVDKLDEAEYTCIAENKAG 82 (95)
T ss_pred CCcccceEEeCCCCEEEEEeccEeCCCEEEEEECCEECcCC----CCEEEEeCCCCEEEECCCChhhCEEEEEEEEcCCC
Confidence 33344456788999999999999999999999999876421 1233333 344799999999999999999999999
Q ss_pred eeEEEEEEEEE
Q psy15127 323 STTVRAFLQVR 333 (633)
Q Consensus 323 ~~~~~~~l~v~ 333 (633)
....++.|.|.
T Consensus 83 ~~~~~~~L~V~ 93 (95)
T cd05730 83 EQEAEIHLKVF 93 (95)
T ss_pred eEEEEEEEEEE
Confidence 99999998886
No 79
>cd05866 Ig1_NCAM-2 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2. Ig1_NCAM-2: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2 (OCAM/mamFas II, RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.
Probab=99.39 E-value=3.2e-12 Score=99.51 Aligned_cols=82 Identities=23% Similarity=0.408 Sum_probs=66.1
Q ss_pred eeCCCceEEEcCCeEEEEEEEeccCCCeEEEEeC-CccCCCC-CeEEcccc---eEEEccCCCCCCeEEEEEEEeCCceE
Q psy15127 75 ISEPSDATVLSGSVVEFVCRVGGDPLPTILWRRD-DGKMPTG-RAKILDDR---SLQIENVGPQDEGLYICDVENLVGSI 149 (633)
Q Consensus 75 ~~~~~~~~~~~G~~~~L~C~~~~~p~p~i~W~~~-~~~i~~~-~~~~~~~~---~L~i~~v~~~d~G~Y~C~~~n~~g~~ 149 (633)
...|.+..+.+|+++.|.|.+.|.|. .+.|+++ +..+..+ +.....++ .|.|.++..+|+|.|+|.|.|..|..
T Consensus 4 ~~~~~~~~v~~G~~v~l~C~~~G~P~-~v~W~k~~g~~~~~~~r~~~~~~g~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~ 82 (92)
T cd05866 4 SISLSKVELSVGESKFFTCTAIGEPE-SIDWYNPQGEKIVSSQRVVVQKEGVRSRLTIYNANIEDAGIYRCQATDAKGQT 82 (92)
T ss_pred EEEecceEEcCCCeEEEEEEEEEeCC-eEEEEeCCCeEecCCCCEEEEeCCCeeEEEEecCChHHCEEEEEEEEcCCCcE
Confidence 45677888999999999999999987 8999984 6665443 44444343 89999999999999999999999884
Q ss_pred -EEEEEEEE
Q psy15127 150 -SLRASLTV 157 (633)
Q Consensus 150 -s~~~~l~V 157 (633)
.+.+.|.|
T Consensus 83 ~~~~i~l~~ 91 (92)
T cd05866 83 QEATVVLEI 91 (92)
T ss_pred EEEEEEEEE
Confidence 66666654
No 80
>cd05851 Ig3_Contactin-1 Third Ig domain of contactin-1. Ig3_Contactin-1: Third Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.
Probab=99.39 E-value=3.1e-12 Score=99.52 Aligned_cols=79 Identities=24% Similarity=0.398 Sum_probs=65.2
Q ss_pred eEEecCCceEEEEEEEeeecCCeeEEEECCEEEEeccCCccceEEEccCceEEEcCCCCCCCeEEEEEEEeCCceeEEEE
Q psy15127 249 LLIWNHPRVNRLSCFAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRA 328 (633)
Q Consensus 249 ~~~~~~g~~~~l~C~~~g~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~ 328 (633)
.....+|+.+.|.|.+.|+|.|.++|++++..+.. ..++.. .++.|.|.++..+|.|.|+|.|.|..|.....+
T Consensus 10 ~~~~~~G~~v~l~C~~~G~P~P~v~W~k~~~~~~~-----~~~~~~-~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~ 83 (88)
T cd05851 10 DTYALKGQNVTLECFALGNPVPVIRWRKILEPMPA-----TAEISM-SGAVLKIFNIQPEDEGTYECEAENIKGKDKHQA 83 (88)
T ss_pred cEEEeCCCcEEEEEEecccCCCEEEEEECCcCCCC-----CCEEec-CCCEEEECcCChhhCEEEEEEEEcCCCceEEEE
Confidence 34567899999999999999999999999876531 122222 355899999999999999999999999999998
Q ss_pred EEEEE
Q psy15127 329 FLQVR 333 (633)
Q Consensus 329 ~l~v~ 333 (633)
.|.|+
T Consensus 84 ~l~V~ 88 (88)
T cd05851 84 RVYVQ 88 (88)
T ss_pred EEEEC
Confidence 88763
No 81
>cd05726 Ig4_Robo Fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Ig4_Robo: domain similar to the fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni
Probab=99.38 E-value=4.1e-12 Score=99.68 Aligned_cols=81 Identities=40% Similarity=0.810 Sum_probs=67.6
Q ss_pred CceEEEEEEEeeecCCeeEEEECCEEEEecc---CCccceEEEccCceEEEcCCCCCCCeEEEEEEEeCCceeEEEEEEE
Q psy15127 255 PRVNRLSCFAEGSPLPSVFWTQEGSQVLMFP---GNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQ 331 (633)
Q Consensus 255 g~~~~l~C~~~g~p~~~v~W~~~g~~~~~~~---~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~ 331 (633)
|+.+.|.|.+.|.|.|.+.|+++|..+.... .....++.+..++.|.|.++..+|+|.|+|.|.|..|.....+.|.
T Consensus 1 G~~v~L~C~~~g~P~p~v~W~k~g~~~~~~~~~~~~~~~r~~v~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~ 80 (90)
T cd05726 1 GRTVTFQCEATGNPQPAIFWQKEGSQNLLFSYQPPQSSSRFSVSQTGDLTITNVQRSDVGYYICQTLNVAGSILTKAYLE 80 (90)
T ss_pred CCEEEEEEECCccCCCEEEEEeCCCcceeecccCCCCCCeEEECCCCeEEEeeCChhhCEEEEEEEEcCCCceEEEEEEE
Confidence 5789999999999999999999987543211 1123566666678999999999999999999999999999999999
Q ss_pred EEec
Q psy15127 332 VREF 335 (633)
Q Consensus 332 v~~~ 335 (633)
|.+.
T Consensus 81 V~~~ 84 (90)
T cd05726 81 VTDV 84 (90)
T ss_pred Eeec
Confidence 9864
No 82
>cd05748 Ig_Titin_like Immunoglobulin (Ig)-like domain of titin and similar proteins. Ig_Titin_like: immunoglobulin (Ig)-like domain found in titin-like proteins. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic, depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone. It appears to function similarly to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching. Within the sarcomere, titin is also attached to or is associated with myosin binding protein C (MyBP-C). MyBP-C appears to contribute to the generation of passive tension by titin, and similar to titin has repeated Ig-like and FN-
Probab=99.38 E-value=3.2e-12 Score=96.25 Aligned_cols=70 Identities=29% Similarity=0.486 Sum_probs=59.3
Q ss_pred eEEEEEEEeccCCCeEEEEeCCccCCCC-CeEEcc---cceEEEccCCCCCCeEEEEEEEeCCceEEEEEEEEE
Q psy15127 88 VVEFVCRVGGDPLPTILWRRDDGKMPTG-RAKILD---DRSLQIENVGPQDEGLYICDVENLVGSISLRASLTV 157 (633)
Q Consensus 88 ~~~L~C~~~~~p~p~i~W~~~~~~i~~~-~~~~~~---~~~L~i~~v~~~d~G~Y~C~~~n~~g~~s~~~~l~V 157 (633)
.+.|.|.+.|.|.|.+.|+|+|..+..+ +..... ...|.|.++..+|+|.|+|.|.|..|..+..+.|.|
T Consensus 1 ~~~l~c~~~G~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~V 74 (74)
T cd05748 1 SVRLEVPISGRPTPTVTWSKDGKPLKLSGRVQIETTASSTSLVIKNAERSDSGKYTLTLKNPAGEKSATINVKV 74 (74)
T ss_pred CEEEEeeEeeeCCCeEEEEECCEEcCCCCeEEEEECCCeEEEEECCCCcCcCEEEEEEEECCCccEEEEEEEEC
Confidence 3789999999999999999999988544 333222 357999999999999999999999999988888765
No 83
>cd05746 Ig4_Peroxidasin Fourth immunoglobulin (Ig)-like domain of peroxidasin. Ig4_Peroxidasin: the fourth immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted, and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells, which have undergone programmed cell death, and protection of the organism against non-self.
Probab=99.38 E-value=2.5e-12 Score=95.09 Aligned_cols=68 Identities=34% Similarity=0.674 Sum_probs=58.9
Q ss_pred EEEEEEEeeecCCeeEEEECCEEEEeccCCccceEEEccCceEEEcCCCCCCCeEEEEEEEeCCceeEEEEEE
Q psy15127 258 NRLSCFAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRAFL 330 (633)
Q Consensus 258 ~~l~C~~~g~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l 330 (633)
+.|.|.+.|.|.|.+.|+|+|..+. ...+..+..++.|.|.++..+|+|.|+|.|.|..|..+.++.|
T Consensus 1 v~L~C~~~g~P~p~i~W~k~g~~~~-----~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~L 68 (69)
T cd05746 1 VQIPCSAQGDPEPTITWNKDGVQVT-----ESGKFHISPEGYLAIRDVGVADQGRYECVARNTIGYASVSMVL 68 (69)
T ss_pred CEeEecceEeCCCEEEEEECCEECC-----CCCCEEECCCCEEEECcCChhhCEEEEEEEECCCCcEEEEEEe
Confidence 4799999999999999999998764 2245556667899999999999999999999999999888765
No 84
>cd04970 Ig6_Contactin_like Sixth Ig domain of contactin. Ig6_Contactin_like: Sixth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week
Probab=99.37 E-value=2.7e-12 Score=99.50 Aligned_cols=74 Identities=23% Similarity=0.356 Sum_probs=62.0
Q ss_pred CeEEEEEEEeccCCC--eEEEEeCCccCCCCC----e--E--EcccceEEEccCCCCCCeEEEEEEEeCCceEEEEEEEE
Q psy15127 87 SVVEFVCRVGGDPLP--TILWRRDDGKMPTGR----A--K--ILDDRSLQIENVGPQDEGLYICDVENLVGSISLRASLT 156 (633)
Q Consensus 87 ~~~~L~C~~~~~p~p--~i~W~~~~~~i~~~~----~--~--~~~~~~L~i~~v~~~d~G~Y~C~~~n~~g~~s~~~~l~ 156 (633)
+++.|.|.+.+.|.| .+.|+++|..+.... . . ....+.|.|.+++.+|+|.|+|.|.|..|..++.+.|.
T Consensus 1 e~~~L~C~~~g~P~p~i~~~W~~~g~~i~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~~~~~l~ 80 (85)
T cd04970 1 ESITLQCHASHDPTLDLTFTWSFNGVPIDFDKDGGHYRRVGGKDSNGDLMIRNAQLKHAGKYTCTAQTVVDSLSASADLI 80 (85)
T ss_pred CcEEEEEEEecCCCCCeEEEEEECCeEeeccCCCccEEEEecccccceEEEccCCHHhCeeeEEEEecCCCcEEEEEEEE
Confidence 468999999999887 579999999875321 1 1 12357899999999999999999999999999999999
Q ss_pred EEee
Q psy15127 157 VHLL 160 (633)
Q Consensus 157 V~~~ 160 (633)
|..+
T Consensus 81 V~~p 84 (85)
T cd04970 81 VRGP 84 (85)
T ss_pred EECC
Confidence 9986
No 85
>cd05856 Ig2_FGFRL1-like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1). Ig2_FGFRL1-like: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1). FGFRL1 is comprised of a signal peptide, three extracellular Ig-like modules, a transmembrane segment, and a short intracellular domain. FGFRL1 is expressed preferentially in skeletal tissues. Similar to FGF receptors, the expressed protein interacts specifically with heparin and with FGF2. FGFRL1 does not have a protein tyrosine kinase domain at its C terminus; neither does its cytoplasmic domain appear to interact with a signaling partner. It has been suggested that FGFRL1 may not have any direct signaling function, but instead acts as a decoy receptor trapping FGFs and preventing them from binding other receptors.
Probab=99.37 E-value=2.9e-12 Score=99.04 Aligned_cols=77 Identities=29% Similarity=0.548 Sum_probs=63.9
Q ss_pred eEEEcCCeEEEEEEEeccCCCeEEEEeCCccCCCCCeEE--cccceEEEccCCCCCCeEEEEEEEeCCceEEEEEEEEE
Q psy15127 81 ATVLSGSVVEFVCRVGGDPLPTILWRRDDGKMPTGRAKI--LDDRSLQIENVGPQDEGLYICDVENLVGSISLRASLTV 157 (633)
Q Consensus 81 ~~~~~G~~~~L~C~~~~~p~p~i~W~~~~~~i~~~~~~~--~~~~~L~i~~v~~~d~G~Y~C~~~n~~g~~s~~~~l~V 157 (633)
+.+..|+.++|.|.+.+.|.|.+.|+|++..+....... .....|.|.+++.+|+|.|+|.|.|..|..+..+.|.|
T Consensus 4 ~~~~~G~~v~L~C~~~g~p~p~i~W~k~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~~v~v 82 (82)
T cd05856 4 IARPVGSSVRLKCVASGNPRPDITWLKDNKPLTPTEIGESRKKKWTLSLKNLKPEDSGKYTCHVSNRAGEINATYKVDV 82 (82)
T ss_pred eeccCCCeEEEEEEeeEeCCCcEEEEECCcCCcCCccceecCceEEEEEccCChhhCEEEEEEEEcCCccEEEEEEEeC
Confidence 456679999999999999999999999998875432222 22368999999999999999999999999888877764
No 86
>cd05760 Ig2_PTK7 Second immunoglobulin (Ig)-like domain of protein tyrosine kinase (PTK) 7, also known as CCK4. Ig2_PTK7: domain similar to the second immunoglobulin (Ig)-like domain in protein tyrosine kinase (PTK) 7, also known as CCK4. PTK7 is a subfamily of the receptor protein tyrosine kinase family, and is referred to as an RPTK-like molecule. RPTKs transduce extracellular signals across the cell membrane, and play important roles in regulating cell proliferation, migration, and differentiation. PTK7 is organized as an extracellular portion having seven Ig-like domains, a single transmembrane region, and a cytoplasmic tyrosine kinase-like domain. PTK7 is considered a pseudokinase as it has several unusual residues in some of the highly conserved tyrosine kinase (TK) motifs; it is predicted to lack TK activity. PTK7 may function as a cell-adhesion molecule. PTK7 mRNA is expressed at high levels in placenta, melanocytes, liver, lung, pancreas, and kidney. PTK7 is overexpressed in s
Probab=99.37 E-value=4.1e-12 Score=96.14 Aligned_cols=69 Identities=33% Similarity=0.740 Sum_probs=55.6
Q ss_pred EEEEEEEeccCCCeEEEEeCCccCCCCC--eEEc-ccceEEEccCCCCCCeEEEEEEEeCCceEE--EEEEEEE
Q psy15127 89 VEFVCRVGGDPLPTILWRRDDGKMPTGR--AKIL-DDRSLQIENVGPQDEGLYICDVENLVGSIS--LRASLTV 157 (633)
Q Consensus 89 ~~L~C~~~~~p~p~i~W~~~~~~i~~~~--~~~~-~~~~L~i~~v~~~d~G~Y~C~~~n~~g~~s--~~~~l~V 157 (633)
++|.|.+.|.|.|.++|+|+|.++.... .... ..+.|.|.+++.+|+|.|+|.|.|..|... ..+.|.|
T Consensus 1 v~L~C~~~g~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~s~~~~~l~v 74 (77)
T cd05760 1 VTLRCHIDGHPRPTYQWFRDGTPLSDGQGNYSVSSKERTLTLRSAGPDDSGLYYCCAHNAFGSVCSSQNFTLSI 74 (77)
T ss_pred CEEEEEeeecCCCcEEEEECCEECCCCCccEEEeCCCCEEEEeeCCcccCEEEEEEEEeCCCeEeeCceEEEEE
Confidence 5799999999999999999999886542 2222 346899999999999999999999999864 4455544
No 87
>cd05864 Ig2_VEGFR-2 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2). Ig2_VEGF-2: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-2 (KDR/Flk-1) is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF-A also interacts with VEGFR-1, which it binds more strongly than VEGFR-2. VEGFR-2 and -1 may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.
Probab=99.37 E-value=3.8e-12 Score=93.45 Aligned_cols=69 Identities=20% Similarity=0.285 Sum_probs=57.1
Q ss_pred EEEEEEEeeecCCeeEEEECCEEEEeccCCccceEEEccCceEEEcCCCCCCCeEEEEEEEeCCceeEEEEEEEEE
Q psy15127 258 NRLSCFAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVR 333 (633)
Q Consensus 258 ~~l~C~~~g~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~ 333 (633)
+.|.|.+.|.|.|.+.|+|+|.++... . .......|.|.++..+|+|.|+|.|.|..|..+....+.+.
T Consensus 1 ~~~~c~v~G~P~P~v~W~k~g~~l~~~-----~--~~~~~~~L~I~~v~~~D~G~YtC~a~N~~G~~~~~~t~~l~ 69 (70)
T cd05864 1 VKIPVKYYGYPPPEVKWYKNGQLIVLN-----H--TFKRGVHLTIYEVTEKDAGNYTVVLTNPITKEEQRHTFQLV 69 (70)
T ss_pred CEEEeEEEEeCCCEEEEEECCEECCCC-----C--EEccCCEEEECcCCHHHCEEEEEEEEECCCceeeEEEEEEE
Confidence 368999999999999999999987421 1 22345589999999999999999999999988877777654
No 88
>cd05737 Ig_Myomesin_like_C C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein. Ig_Myomesin_like_C: domain similar to the C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein. Myomesin and M-protein are both structural proteins localized to the M-band, a transverse structure in the center of the sarcomere, and are candidates for M-band bridges. Both proteins are modular, consisting mainly of repetitive Ig-like and fibronectin type III (FnIII) domains. Myomesin is expressed in all types of vertebrate striated muscle; M-protein has a muscle-type specific expression pattern. Myomesin is present in both slow and fast fibers; M-protein is present only in fast fibers. It has been suggested that myomesin acts as a molecular spring with alternative splicing as a means of modifying its elasticity.
Probab=99.37 E-value=6.3e-12 Score=99.00 Aligned_cols=83 Identities=23% Similarity=0.373 Sum_probs=66.2
Q ss_pred ceeEEecCCceEEEEEEEeeecCCeeEEEECCEEEEeccCCccceEEEc--cCceEEEcCCCCCCCeEEEEEEEeCCcee
Q psy15127 247 ASLLIWNHPRVNRLSCFAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVT--QEGTLRIQGVQKEDAGFFVCSALSVAGST 324 (633)
Q Consensus 247 ~~~~~~~~g~~~~l~C~~~g~p~~~v~W~~~g~~~~~~~~~~~~~~~~~--~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~ 324 (633)
+..+.+.+|+++.|.|.+.|.|.|.+.|+|+|..+... .. .++... ...+|.|.++..+|+|.|+|.|.|..|..
T Consensus 8 p~~v~v~~G~~v~L~C~v~G~P~p~v~W~k~g~~l~~~--~~-~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~ 84 (92)
T cd05737 8 PDVVTIMEGKTLNLTCTVFGDPDPEVSWLKNDQALALS--DH-YNVKVEQGKYASLTIKGVSSEDSGKYGIVVKNKYGGE 84 (92)
T ss_pred CceEEEeCCCcEEEEEEEEecCCCeEEEEECCEECccC--CC-EEEEEcCCCEEEEEEccCChhhCEEEEEEEEECCCcc
Confidence 44567788999999999999999999999999887421 11 122222 22379999999999999999999999999
Q ss_pred EEEEEEEE
Q psy15127 325 TVRAFLQV 332 (633)
Q Consensus 325 ~~~~~l~v 332 (633)
+..+.|.|
T Consensus 85 ~~~~~v~v 92 (92)
T cd05737 85 TVDVTVSV 92 (92)
T ss_pred eEEEEEeC
Confidence 88877754
No 89
>cd05855 Ig_TrkB_d5 Fifth domain (immunoglobulin-like) of Trk receptor TrkB. TrkB_d5: the fifth domain of Trk receptor TrkB, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors, which mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. The Trks are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkB shares significant sequence homology and domain organization with TrkA, and TrkC. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. In some cell systems NT-3 can activate TrkA and TrkB receptors. TrKB transcripts are found throughout multiple structures of the central and peripheral nervous systems.
Probab=99.36 E-value=2.9e-12 Score=95.80 Aligned_cols=66 Identities=21% Similarity=0.328 Sum_probs=55.4
Q ss_pred EEEEEeccCCCeEEEEeCCccCCCCCeEE-----c----ccceEEEccCCCCCCeEEEEEEEeCCceEEEEEEEE
Q psy15127 91 FVCRVGGDPLPTILWRRDDGKMPTGRAKI-----L----DDRSLQIENVGPQDEGLYICDVENLVGSISLRASLT 156 (633)
Q Consensus 91 L~C~~~~~p~p~i~W~~~~~~i~~~~~~~-----~----~~~~L~i~~v~~~d~G~Y~C~~~n~~g~~s~~~~l~ 156 (633)
|.|.+.|+|.|.|+|+|+|.+|..+++.. . ..+.|.|.++..+|+|.|+|.|+|..|..++.+.+.
T Consensus 3 i~~~v~G~P~Pti~W~kng~~l~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~YtC~A~N~~G~~~~~~~~~ 77 (79)
T cd05855 3 IPFTVKGNPKPTLQWFHEGAILNESEYICTKIHVINNTEYHGCLQLDNPTHLNNGIYTLVAKNEYGEDEKNVSAH 77 (79)
T ss_pred EEEEEeEeCCCceEEEECCEECCCCcceeeeeEeecccceEEEEEECCCCcccCEEEEEEEEcCCcccceEEEee
Confidence 78999999999999999999997654321 1 135799999999999999999999999887777654
No 90
>cd04978 Ig4_L1-NrCAM_like Fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related). Ig4_L1-NrCAM_like: fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related). These proteins belong to the L1 subfamily of cell adhesion molecules (CAMs) and are comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. These molecules are primarily expressed in the nervous system. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.
Probab=99.36 E-value=5.8e-12 Score=95.58 Aligned_cols=75 Identities=32% Similarity=0.569 Sum_probs=62.7
Q ss_pred CceEEEEEEEeeecCCeeEEEECCEEEEeccCCccceEEEccCceEEEcCCCCCCCeEEEEEEEeCCceeEEEEEEEE
Q psy15127 255 PRVNRLSCFAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQV 332 (633)
Q Consensus 255 g~~~~l~C~~~g~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v 332 (633)
|+.+.|.|.+.|.|.|.+.|+++|..+..... ........+.|.|.++..+|.|.|+|.|.|..|.....+.|.|
T Consensus 1 G~~~~l~C~~~g~P~p~i~W~~~g~~~~~~~~---~~~~~~~~~~L~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~V 75 (76)
T cd04978 1 GETGRLDCEAEGIPQPTITWRLNGVPIEELPP---DPRRRVDGGTLILSNVQPNDTAVYQCNASNVHGYLLANAFVHV 75 (76)
T ss_pred CCeEEEEEEceeeCCCEEEEEECCEECCCCCC---cceEEccCCEEEECCCChhhCEEEEEEEEccCCeEEEeEEEEE
Confidence 57899999999999999999999987742211 1123345678999999999999999999999999999988876
No 91
>cd05756 Ig1_IL1R_like First immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins. Ig1_IL1R_like: domain similar to the first immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta.
Probab=99.36 E-value=3e-12 Score=100.41 Aligned_cols=79 Identities=29% Similarity=0.403 Sum_probs=65.3
Q ss_pred CceEEEcCCeEEEEEEEec-----cCCCeEEEEeCCccCCC----CCeEEcccceEEEccCCCCCCeEEEEEEEeCCceE
Q psy15127 79 SDATVLSGSVVEFVCRVGG-----DPLPTILWRRDDGKMPT----GRAKILDDRSLQIENVGPQDEGLYICDVENLVGSI 149 (633)
Q Consensus 79 ~~~~~~~G~~~~L~C~~~~-----~p~p~i~W~~~~~~i~~----~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~n~~g~~ 149 (633)
.+..+.+|+.+.|.|.+.+ .|.+.|.|||++..+.. ..+....++.|.|.+++.+|+|.|+|.+.|..|..
T Consensus 7 ~~~~v~~G~~~~L~C~~~g~~~~~~p~~~v~Wyk~~~~~~~~~~~~~r~~~~~~~L~I~~~~~~DsG~Y~C~~~N~~g~~ 86 (94)
T cd05756 7 KKSYVLEGEPVVIKCPLFYSYIAQSPGLNLTWYKSDGKTPIPTEERSRMHQQKDLLWFLPAALEDSGLYTCVVRNSTYCM 86 (94)
T ss_pred eEEEEecCCCeEEECCCCCcccccCCCceEEEEEcCCCCcccccccceeeecCCeEEEccCCcccCeEEEEEEcCCCccE
Confidence 4667889999999999988 68889999999876532 22223346789999999999999999999999998
Q ss_pred EEEEEEEE
Q psy15127 150 SLRASLTV 157 (633)
Q Consensus 150 s~~~~l~V 157 (633)
+..+.|.|
T Consensus 87 ~~~~~L~v 94 (94)
T cd05756 87 KVSISLTV 94 (94)
T ss_pred EEEEEEEC
Confidence 88888765
No 92
>KOG3515|consensus
Probab=99.36 E-value=6.3e-11 Score=123.10 Aligned_cols=199 Identities=18% Similarity=0.199 Sum_probs=137.3
Q ss_pred EEEcCCeEEEEEEEeccC-CCeEEEEeCCccCCCCCeEEcccceEEEccCCCCCCeEEEEEEEeCCce-EEEEEEEEEEe
Q psy15127 82 TVLSGSVVEFVCRVGGDP-LPTILWRRDDGKMPTGRAKILDDRSLQIENVGPQDEGLYICDVENLVGS-ISLRASLTVHL 159 (633)
Q Consensus 82 ~~~~G~~~~L~C~~~~~p-~p~i~W~~~~~~i~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~n~~g~-~s~~~~l~V~~ 159 (633)
.+..|+.|.|.|.+.++| .+++.|++.+..+. +++....+.+|...+..++.-+.|.|++.|..+. ......+.|..
T Consensus 18 ~~~~g~~v~l~C~v~~~pp~~~~eW~h~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~c~a~ns~~~~~~~~~~l~v~~ 96 (741)
T KOG3515|consen 18 GLRLGEDVPLPCRVNSNPPEIDVEWYHSTSGEH-GRYATIADPTLVTTGDVRDTVAELNCRAFNSVGMPSRCPMILDVDY 96 (741)
T ss_pred hhccCCcceeeeecCCCCCCcceEEEecCcccc-cccccccCCceeeecchhhhhhhhhhhhcccccCceecceeecccc
Confidence 789999999999998764 55899999988776 6666677889999999999999999999998666 56777788888
Q ss_pred eccccccCCCceEEecCCcEEEEE-eCCCCCCCCeEEEEECCEEeccCCCeeEEec----------cceeee----EEEe
Q psy15127 160 LRDDFRAEPKDTRVASGETALLEC-GPPKGQPEPTLHWKKNGQFIDLESSKSLDLS----------RRTLGW----LRVR 224 (633)
Q Consensus 160 ~~p~~~~~~~~~~~~~g~~~~l~C-~~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~----------~~~~~~----~~~~ 224 (633)
+ |.-...........+..+.+.| ....+.|.+.+.|..+............... ...+.+ ....
T Consensus 97 ~-pa~~~~~~e~~~~~~~vvqi~c~~~~~~~P~~nlrW~~n~r~e~~~~~~~~~~~~~a~gss~t~~s~l~~~v~Rka~~ 175 (741)
T KOG3515|consen 97 P-PACLPELGEIFQVDKGVVQIICSAKVAGRPNPNLRWGFNNRAELNAVNQRGRVGAGALGSSYTEPSLLKQTVSRKADN 175 (741)
T ss_pred C-ccccccccchhhhcCCeEEEEEeecCCCCCCcceeeeeccEEeecccCCcccccccccCceeccccceeeEEEEecCC
Confidence 7 5443344444566788999999 4456788889999998776554332111111 111111 1224
Q ss_pred eeEEEEeecCCCCC---C---cccc---------cccceeEEecCCceEEEEEEEe-eecCCeeEEEECCEEEE
Q psy15127 225 PLYWNVARPRANLN---P---RYIG---------RKMASLLIWNHPRVNRLSCFAE-GSPLPSVFWTQEGSQVL 282 (633)
Q Consensus 225 g~y~C~a~~~~~~~---p---~~~~---------~~~~~~~~~~~g~~~~l~C~~~-g~p~~~v~W~~~g~~~~ 282 (633)
|+|+|.|.+..... . .+.. ..........+|+.+.|.|.+. |+|.++++|+++.....
T Consensus 176 g~~tC~A~nr~s~~l~~~~~~~i~v~~~~~~~~~~~~~~~qsF~~g~~inlvc~~~gg~P~~~~~w~~~s~~~~ 249 (741)
T KOG3515|consen 176 GNYTCPANNRNSPGLSFAKQLTIIVEAPCKGIGITGAQEQQSFTEGQTINLVCNAQGGNPSQQQTWYKDSRPQS 249 (741)
T ss_pred ceeEcccccccCccccccceeEeecccccccceecchhhcCcccccceEEEEehhhcCCcchhhhhccccccch
Confidence 79999998853211 0 0000 0011112345678999999875 56778999999887654
No 93
>cd05731 Ig3_L1-CAM_like Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). Ig3_L1-CAM_like: domain similar to the third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM and human neurofascin.
Probab=99.36 E-value=3.4e-12 Score=95.44 Aligned_cols=69 Identities=35% Similarity=0.636 Sum_probs=59.1
Q ss_pred EEEEEEEeccCCCeEEEEeCCccCCCCCeEE-cccceEEEccCCCCCCeEEEEEEEeCCceEEEEEEEEE
Q psy15127 89 VEFVCRVGGDPLPTILWRRDDGKMPTGRAKI-LDDRSLQIENVGPQDEGLYICDVENLVGSISLRASLTV 157 (633)
Q Consensus 89 ~~L~C~~~~~p~p~i~W~~~~~~i~~~~~~~-~~~~~L~i~~v~~~d~G~Y~C~~~n~~g~~s~~~~l~V 157 (633)
++|.|.+.|.|.|.+.|+|++..+..++... ...+.|.|.+++.+|+|.|+|.|.|..|..+..+.|.|
T Consensus 1 v~l~C~~~g~P~p~v~W~k~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V 70 (71)
T cd05731 1 LLLECIAEGLPTPEISWIKIGGELPADRTKFENFNKTLKIDNVSEEDDGEYRCTASNSLGSARHTISVTV 70 (71)
T ss_pred CEEEEEeeEecCCeEEEEECCeECCCCceeEecCCCEEEECCCCHHHCEEEEEEEEeCCceEEEEEEEEE
Confidence 4799999999999999999998776544332 23568999999999999999999999999888888876
No 94
>cd05854 Ig6_Contactin-2 Sixth Ig domain of contactin-2. Ig6_Contactin-2: Sixth Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c
Probab=99.35 E-value=9e-12 Score=96.03 Aligned_cols=79 Identities=27% Similarity=0.395 Sum_probs=62.6
Q ss_pred ceEEEEEEEeeecCC--eeEEEECCEEEEeccC-CccceEEE-ccCceEEEcCCCCCCCeEEEEEEEeCCceeEEEEEEE
Q psy15127 256 RVNRLSCFAEGSPLP--SVFWTQEGSQVLMFPG-NAYGHLHV-TQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQ 331 (633)
Q Consensus 256 ~~~~l~C~~~g~p~~--~v~W~~~g~~~~~~~~-~~~~~~~~-~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~ 331 (633)
+.++|.|.+.|+|.| .+.|+++|..+..... ..+.+... ...++|.|.+++..|+|.|+|.|.|..|..++++.|.
T Consensus 1 ~~~~L~C~a~g~P~p~~~v~W~~~g~~i~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~YtC~A~n~~g~~~~~~~L~ 80 (85)
T cd05854 1 ENLTLQCHASHDPTMDLTFTWSLDDFPIDLDKPNGHYRRMEVKETIGDLVIVNAQLSHAGTYTCTAQTVVDSASASATLV 80 (85)
T ss_pred CcEEEEEEEecCCCCCeEEEEEECCeEccccCCCCcEEEEEecceEeEEEEccCChhhCeEEEEEEecCCCCEEEEEEEE
Confidence 468999999999987 6899999988743221 11112222 2346899999999999999999999999999999999
Q ss_pred EEe
Q psy15127 332 VRE 334 (633)
Q Consensus 332 v~~ 334 (633)
|..
T Consensus 81 V~~ 83 (85)
T cd05854 81 VRG 83 (85)
T ss_pred EEC
Confidence 985
No 95
>cd07702 Ig2_VEGFR-1 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1). Ig2_VEGFR-1: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1). VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-1 binds VEGF-A strongly; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-1 may play an inhibitory rolet in the function of VEGFR-2 by binding VEGF-A and interfering with its interaction with VEGFR-2. VEGFR-1 has a signaling role in mediating monocyte chemotaxis and may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.
Probab=99.35 E-value=4.7e-12 Score=93.02 Aligned_cols=69 Identities=20% Similarity=0.294 Sum_probs=55.7
Q ss_pred EEEEEEEeccCCCeEEEEeCCccCCCC-CeEEcccceEEEccCCCCCCeEEEEEEEeCCceEEEEEEEEE
Q psy15127 89 VEFVCRVGGDPLPTILWRRDDGKMPTG-RAKILDDRSLQIENVGPQDEGLYICDVENLVGSISLRASLTV 157 (633)
Q Consensus 89 ~~L~C~~~~~p~p~i~W~~~~~~i~~~-~~~~~~~~~L~i~~v~~~d~G~Y~C~~~n~~g~~s~~~~l~V 157 (633)
+.|.|.+.|.|.|.+.|+|++.++... ......+.+|.|.+++.+|+|.|+|.|.|..........++.
T Consensus 1 ~~l~c~v~g~P~P~v~W~kdg~~l~~~~~~~~~~~~~L~I~~v~~~D~G~YtC~a~~~~~~~~~~~~i~~ 70 (72)
T cd07702 1 YRLTPKVKAFPAPEVIWLKDGLPAAEKCSRYHVDGYSLVIKDVTEEDAGIYTILLGIKQYNLFKNLTITL 70 (72)
T ss_pred CeEEeeEEEcCCCeEEEEECCEECCCCCcEEEeCCCEEEECcCCHHHCEEEEEEEEccccceEeeEEEEE
Confidence 469999999999999999999998654 333445568999999999999999999998666555544443
No 96
>cd05876 Ig3_L1-CAM Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). Ig3_L1-CAM: third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.
Probab=99.35 E-value=5.3e-12 Score=93.86 Aligned_cols=70 Identities=29% Similarity=0.481 Sum_probs=58.2
Q ss_pred EEEEEEEeeecCCeeEEEECCEEEEeccCCccceEEEccCceEEEcCCCCCCCeEEEEEEEeCCceeEEEEEEEE
Q psy15127 258 NRLSCFAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQV 332 (633)
Q Consensus 258 ~~l~C~~~g~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v 332 (633)
+.|.|.+.|.|.|.+.|++++..+.. ........++.|.|.++..+|.|.|+|.|.|..|..+.++.|.|
T Consensus 1 ~~L~C~~~G~P~P~v~W~k~~~~~~~-----~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V 70 (71)
T cd05876 1 LVLECIAEGLPTPEVHWDRIDGPLSP-----NRTKKLNNNKTLQLDNVLESDDGEYVCTAENSEGSARHHYTVTV 70 (71)
T ss_pred CEEEEEeeEecCCeEEEEECCcCCCC-----CceeEEcCCCEEEEcccCHHhCEEEEEEEEcCCCeEEEEEEEEE
Confidence 46999999999999999999876531 11223345679999999999999999999999999998888876
No 97
>cd05764 Ig_2 Subgroup of the immunoglobulin (Ig) superfamily. Ig_2: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=99.34 E-value=6.7e-12 Score=94.54 Aligned_cols=72 Identities=26% Similarity=0.531 Sum_probs=61.0
Q ss_pred CCeEEEEEEEeccCCCeEEEEe-CCccCCCC-CeEEcccceEEEccCCCCCCeEEEEEEEeCCceEEEEEEEEE
Q psy15127 86 GSVVEFVCRVGGDPLPTILWRR-DDGKMPTG-RAKILDDRSLQIENVGPQDEGLYICDVENLVGSISLRASLTV 157 (633)
Q Consensus 86 G~~~~L~C~~~~~p~p~i~W~~-~~~~i~~~-~~~~~~~~~L~i~~v~~~d~G~Y~C~~~n~~g~~s~~~~l~V 157 (633)
|+.+.|.|.+.|.|.|.+.|++ ++..+... +.....+++|.|.+++.+|+|.|+|.|.|..|..+..+.|.|
T Consensus 1 G~~~~l~C~~~g~P~p~v~W~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~v 74 (74)
T cd05764 1 GQRATLRCKARGDPEPAIHWISPDGKLISNSSRTLVYDNGTLDILITTVKDTGSFTCIASNAAGEATATVELHI 74 (74)
T ss_pred CCeEEEEEEccCcCCCEEEEEeCCCEEecCCCeEEEecCCEEEEEECChhhCEEEEEEEECCCCeEEEEEEEEC
Confidence 7899999999999999999997 56665443 344456789999999999999999999999999888887765
No 98
>cd04977 Ig1_NCAM-1_like First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1 and similar proteins. Ig1_NCAM-1 like: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the s
Probab=99.34 E-value=1e-11 Score=97.51 Aligned_cols=83 Identities=25% Similarity=0.478 Sum_probs=64.6
Q ss_pred eeeCCCceEEEcCCeEEEEEEEeccCCCeEEEEe-CCccCCC-CCeEEccc----ceEEEccCCCCCCeEEEEEEEeCCc
Q psy15127 74 PISEPSDATVLSGSVVEFVCRVGGDPLPTILWRR-DDGKMPT-GRAKILDD----RSLQIENVGPQDEGLYICDVENLVG 147 (633)
Q Consensus 74 ~~~~~~~~~~~~G~~~~L~C~~~~~p~p~i~W~~-~~~~i~~-~~~~~~~~----~~L~i~~v~~~d~G~Y~C~~~n~~g 147 (633)
+...|....+..|+++.|.|.+.|.| +.++|++ ++..+.. ++.....+ ++|+|.+++.+|+|.|+|.|.|..|
T Consensus 3 v~v~p~~~~v~~G~~~~l~C~~~G~p-~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~g 81 (92)
T cd04977 3 VDIVPSQGEISVGESKFFLCQVIGEP-KDISWFSPNGEKLVTQQQISVVQNDDVRSTLTIYNANIEDAGIYKCVATDAKG 81 (92)
T ss_pred EEEecCcEEECCCCeEEEEEEeEeeC-CeEEEECCCCCEeccCCCEEEEeCCCCEEEEEEecCCcccCEEEEEEEEcCCC
Confidence 44667888999999999999999987 4999998 5665543 34333322 4799999999999999999999875
Q ss_pred e-EEEEEEEEE
Q psy15127 148 S-ISLRASLTV 157 (633)
Q Consensus 148 ~-~s~~~~l~V 157 (633)
. .++++.|.|
T Consensus 82 ~~~~~sv~l~~ 92 (92)
T cd04977 82 TESEATVNLKI 92 (92)
T ss_pred CcceeEEEEEC
Confidence 5 566666653
No 99
>cd05744 Ig_Myotilin_C_like Immunoglobulin (Ig)-like domain of myotilin, palladin, and myopalladin. Ig_Myotilin_like_C: immunoglobulin (Ig)-like domain in myotilin, palladin, and myopalladin. Myotilin, palladin, and myopalladin function as scaffolds that regulate actin organization. Myotilin and myopalladin are most abundant in skeletal and cardiac muscle; palladin is ubiquitously expressed in the organs of developing vertebrates and plays a key role in cellular morphogenesis. The three family members each interact with specific molecular partners: all three bind to alpha-actinin; in addition, palladin also binds to vasodilator-stimulated phosphoprotein (VASP) and ezrin, myotilin binds to filamin and actin, and myopalladin also binds to nebulin and cardiac ankyrin repeat protein (CARP).
Probab=99.34 E-value=8.8e-12 Score=93.62 Aligned_cols=71 Identities=32% Similarity=0.536 Sum_probs=57.6
Q ss_pred EEEEEEEeeecCCeeEEEECCEEEEeccCCccceEEEccC----ceEEEcCCCCCCCeEEEEEEEeCCceeEEEEEEEE
Q psy15127 258 NRLSCFAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQE----GTLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQV 332 (633)
Q Consensus 258 ~~l~C~~~g~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~~----~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v 332 (633)
++|.|.+.|.|.|.+.|+|++..+... ..++.+..+ .+|.|.++..+|+|.|+|.|.|..|..+.++.|.|
T Consensus 1 v~L~C~v~G~P~P~v~W~k~~~~i~~~----~~r~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~v 75 (75)
T cd05744 1 VRLECRVSAIPPPQIFWKKNNEMLTYN----TDRISLYQDNCGRICLLIQNANKEDAGWYTVSAVNEAGVVSCNARLDV 75 (75)
T ss_pred CEEEEEEeecCCCeEEEEECCEECCCC----CCcEEEEEcCCCeEEEEECCCCcccCEEEEEEEEcCCCcEEEEEEEeC
Confidence 479999999999999999999877421 123333222 26999999999999999999999999999888764
No 100
>cd04971 Ig_TrKABC_d5 Fifth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC. TrkABC_d5: the fifth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrkB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor foun
Probab=99.34 E-value=6.1e-12 Score=95.60 Aligned_cols=67 Identities=22% Similarity=0.240 Sum_probs=55.5
Q ss_pred EEEEEEeccCCCeEEEEeCCccCCCCCeEE-----------cccceEEEccCCCCCCeEEEEEEEeCCceEEEEEEEE
Q psy15127 90 EFVCRVGGDPLPTILWRRDDGKMPTGRAKI-----------LDDRSLQIENVGPQDEGLYICDVENLVGSISLRASLT 156 (633)
Q Consensus 90 ~L~C~~~~~p~p~i~W~~~~~~i~~~~~~~-----------~~~~~L~i~~v~~~d~G~Y~C~~~n~~g~~s~~~~l~ 156 (633)
-|.|.+.|.|.|.|+|+|+|..+..+.... ...+.|.|.+++.+|+|.|+|.|.|..|..++.+.|.
T Consensus 2 ~i~~~v~G~P~P~v~W~k~g~~i~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~YtC~A~N~~G~~~~~~~~~ 79 (81)
T cd04971 2 CIPFTVRGNPKPTLTWYHNGAVLNESDYIRTEIHYEVTTPTEYHGCLQFDNPTHVNNGNYTLVASNEYGQDSKSISAH 79 (81)
T ss_pred eEEEEeEeeCCCcEEEEECCEECcCCCceeEEEEeecccccccEEEEEECCCCcccCeEEEEEEEeCCCCeeeEEEee
Confidence 378999999999999999999886543211 1134799999999999999999999999988877765
No 101
>cd04972 Ig_TrkABC_d4 Fourth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC. TrkABC_d4: the fourth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor fo
Probab=99.33 E-value=1.3e-11 Score=96.81 Aligned_cols=82 Identities=23% Similarity=0.332 Sum_probs=64.8
Q ss_pred eEEecCCceEEEEEEEeeecCCeeEEEECCEEEEeccCCccceEEEccCceEEEcCCCCCCCeEEEEEEEeCCceeEEEE
Q psy15127 249 LLIWNHPRVNRLSCFAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRA 328 (633)
Q Consensus 249 ~~~~~~g~~~~l~C~~~g~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~ 328 (633)
...+..|+.+.|.|.+.|.|.|.+.|+++|..+... .............|.|.++..+|.|.|+|.|.|..|....++
T Consensus 9 ~~~v~~G~~v~l~C~~~G~P~p~v~W~~~g~~~~~~--~~~~~~~~~~~~~L~I~~v~~~D~g~Y~C~A~N~~G~~~~~~ 86 (90)
T cd04972 9 ATVVYEGGTATIRCTAEGSPLPKVEWIIAGLIVIQT--RTDTLETTVDIYNLQLSNITSETQTTVTCTAENPVGQANVSV 86 (90)
T ss_pred CEEEcCCCcEEEEEEEEEcCCCeEEEEECCEEccCC--ccEEEEecCCEEEEEEecCCcccCEEEEEEEECCCCceeEEE
Confidence 344788999999999999999999999999876421 110111122345899999999999999999999999999888
Q ss_pred EEEE
Q psy15127 329 FLQV 332 (633)
Q Consensus 329 ~l~v 332 (633)
.|.|
T Consensus 87 ~L~v 90 (90)
T cd04972 87 QVTV 90 (90)
T ss_pred EEeC
Confidence 8764
No 102
>cd05752 Ig1_FcgammaR_like Frst immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins. Ig1_FcgammaR_like: domain similar to the first immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.
Probab=99.33 E-value=3.6e-12 Score=95.96 Aligned_cols=77 Identities=23% Similarity=0.382 Sum_probs=62.6
Q ss_pred CeeeeCCCceEEEcCCeEEEEEEEeccCCC-eEEEEeCCccCCCCCeEEcccceEEEccCCCCCCeEEEEEEEeCCceEE
Q psy15127 72 PFPISEPSDATVLSGSVVEFVCRVGGDPLP-TILWRRDDGKMPTGRAKILDDRSLQIENVGPQDEGLYICDVENLVGSIS 150 (633)
Q Consensus 72 p~~~~~~~~~~~~~G~~~~L~C~~~~~p~p-~i~W~~~~~~i~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~n~~g~~s 150 (633)
|.+...|+...+.+|++++|.|.+.+.|.+ .+.|+|||..+.. ....|.|.++ .+|+|.|+|.|.|. ..+
T Consensus 1 ~vv~~~P~~~~v~~G~~V~L~C~~~~~p~~~~~~W~kng~~l~~------~~~~l~i~~~-~~dsG~Y~C~a~~~--~~S 71 (78)
T cd05752 1 AVVSLDPPWTTIFQGEKVTLTCNGFNSPEQNSTQWYHNGKLLET------TTNSYRIRAA-NNDSGEYRCQTQGS--SLS 71 (78)
T ss_pred CeEEeCCCCeEeeCCCCEEEEEeCCCCCCCccEEEEECCEEeec------cCCeEEEeec-ccCCEEeEEECCCC--cCC
Confidence 577888999999999999999999887754 6999999987732 3468999999 99999999999875 344
Q ss_pred EEEEEEE
Q psy15127 151 LRASLTV 157 (633)
Q Consensus 151 ~~~~l~V 157 (633)
..+.|+|
T Consensus 72 ~~v~l~V 78 (78)
T cd05752 72 DPVHLEV 78 (78)
T ss_pred CCEEEeC
Confidence 5555543
No 103
>cd04976 Ig2_VEGFR Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR). Ig2_VEGFR: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A. VEGFR-1 may play an inhibitory part in these processes by binding VEGF and interfering with its interaction with VEGFR-2. VEGFR-1 has a signa
Probab=99.33 E-value=1.1e-11 Score=91.92 Aligned_cols=70 Identities=20% Similarity=0.290 Sum_probs=58.4
Q ss_pred EEEEEEEeeecCCeeEEEECCEEEEeccCCccceEEEccCceEEEcCCCCCCCeEEEEEEEeCCceeEEEEEEEEE
Q psy15127 258 NRLSCFAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVR 333 (633)
Q Consensus 258 ~~l~C~~~g~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~ 333 (633)
+.|.|.+.|.|+|.+.|+|+|..+... .+ ......+|.|.++..+|+|.|+|.|.|..|..+.+..+.+.
T Consensus 1 ~~l~c~v~g~P~p~v~W~k~g~~l~~~-----~~-~~~~~~~L~I~~v~~~D~G~YtC~a~N~~g~~~~~~~~~~~ 70 (71)
T cd04976 1 VRLPVKVKAYPPPEIQWYKNGKLISEK-----NR-TKKSGHSLTIKDVTEEDAGNYTVVLTNKQAKLEKRLTFTLV 70 (71)
T ss_pred CEEEeEEEEeCCCEEEEEECCEECCCC-----CE-EEcCCCEEEECcCCHHHCEEEEEEEEcCCccEEEEEEEEEE
Confidence 469999999999999999999887421 22 23355789999999999999999999999998888777764
No 104
>cd05743 Ig_Perlecan_D2_like Immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2. Ig_Perlecan_D2_like: the immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2. Perlecan consists of five domains. Domain I has three putative heparan sulfate attachment sites; domain II has four LDL receptor-like repeats, and one Ig-like repeat; domain III resembles the short arm of laminin chains; domain IV has multiple Ig-like repeats (21 repeats in human perlecan); and domain V resembles the globular G domain of the laminin A chain and internal repeats of EGF. Perlecan may participate in a variety of biological functions including cell binding, LDL-metabolism, basement membrane assembly and selective permeability, calcium binding, and growth- and neurite-promoting activities.
Probab=99.33 E-value=8.5e-12 Score=94.81 Aligned_cols=72 Identities=33% Similarity=0.573 Sum_probs=59.1
Q ss_pred CCeEEEEEEEeccCCCeEEEEeCCccCCCC-CeEEcc---cceEEEccCCCCCCeEEEEEEEeCCceEEEEEEEEE
Q psy15127 86 GSVVEFVCRVGGDPLPTILWRRDDGKMPTG-RAKILD---DRSLQIENVGPQDEGLYICDVENLVGSISLRASLTV 157 (633)
Q Consensus 86 G~~~~L~C~~~~~p~p~i~W~~~~~~i~~~-~~~~~~---~~~L~i~~v~~~d~G~Y~C~~~n~~g~~s~~~~l~V 157 (633)
|+++.|.|.+.|.|.|.++|++++..+... +..... .+.|.|.+++.+|+|.|+|.|.|..|.....+.+.+
T Consensus 1 G~~v~l~C~~~g~P~p~v~W~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~~~~ 76 (78)
T cd05743 1 GETVEFTCVATGVPTPIINWRLNWGHVPDSARVSITSEGGYGTLTIRDVKESDQGAYTCEAINTRGMVFGIPDGIL 76 (78)
T ss_pred CCEEEEEEEEEEecCCEEEEEECCeECCCCCCEEEEECCCEEEEEECCCChHHCEEEEEEEEecCCEEEecccEEE
Confidence 789999999999999999999998887654 333322 358999999999999999999999998765555443
No 105
>cd05758 Ig5_KIRREL3-like Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2) and similar proteins. Ig5_KIRREL3-like: domain similar to the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.
Probab=99.33 E-value=1.4e-11 Score=98.37 Aligned_cols=84 Identities=24% Similarity=0.381 Sum_probs=67.8
Q ss_pred CCeeeeCCCceEEEcCCeEEEEEEEeccCCC-eEEEEeCCccCCC---CCeEEccc-------ceEEEccCCC-CCCeEE
Q psy15127 71 KPFPISEPSDATVLSGSVVEFVCRVGGDPLP-TILWRRDDGKMPT---GRAKILDD-------RSLQIENVGP-QDEGLY 138 (633)
Q Consensus 71 ~p~~~~~~~~~~~~~G~~~~L~C~~~~~p~p-~i~W~~~~~~i~~---~~~~~~~~-------~~L~i~~v~~-~d~G~Y 138 (633)
||.+ ..+....+.+|+.+.|.|.+.|.|.| .|.|++++..+.. .++.+... +.|.|.++.. +|.|.|
T Consensus 2 pp~i-~~~~~~~~~~G~~v~L~C~~~g~P~P~~v~W~~~~~~i~~~~~~r~~i~~~~~~~~~~s~L~I~~v~~~d~~G~Y 80 (98)
T cd05758 2 PPII-TSEATQYAILGDKGRVECFIFSTPPPDRIVWTWKENELESGSSGRYTVETDPSPGGVLSTLTISNTQESDFQTSY 80 (98)
T ss_pred CCeE-cCCCcEEEeCCCcEEEEEEEcccCCCCEeEEEECCEEccCCCCCCEEEEEecCCCceEEEEEECCccccccceeE
Confidence 4555 45667789999999999999999999 6999999988753 34444322 4799999999 559999
Q ss_pred EEEEEeCCceEEEEEEE
Q psy15127 139 ICDVENLVGSISLRASL 155 (633)
Q Consensus 139 ~C~~~n~~g~~s~~~~l 155 (633)
+|.|.|..|.....+.|
T Consensus 81 ~C~A~N~~G~~~~~~~L 97 (98)
T cd05758 81 NCTAWNSFGSGTAIISL 97 (98)
T ss_pred EEEEEcCCCcccEEEEe
Confidence 99999999998777765
No 106
>cd05748 Ig_Titin_like Immunoglobulin (Ig)-like domain of titin and similar proteins. Ig_Titin_like: immunoglobulin (Ig)-like domain found in titin-like proteins. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic, depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone. It appears to function similarly to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching. Within the sarcomere, titin is also attached to or is associated with myosin binding protein C (MyBP-C). MyBP-C appears to contribute to the generation of passive tension by titin, and similar to titin has repeated Ig-like and FN-
Probab=99.33 E-value=1.2e-11 Score=93.06 Aligned_cols=71 Identities=23% Similarity=0.480 Sum_probs=58.3
Q ss_pred eEEEEEEEeeecCCeeEEEECCEEEEeccCCccceEEE---ccCceEEEcCCCCCCCeEEEEEEEeCCceeEEEEEEEE
Q psy15127 257 VNRLSCFAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHV---TQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQV 332 (633)
Q Consensus 257 ~~~l~C~~~g~p~~~v~W~~~g~~~~~~~~~~~~~~~~---~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v 332 (633)
.+.|.|.+.|.|.|.+.|+++|..+.. ..+..+ .....|.|.++..+|+|.|+|.|.|..|..+.++.|.|
T Consensus 1 ~~~l~c~~~G~P~p~v~W~k~g~~l~~-----~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~V 74 (74)
T cd05748 1 SVRLEVPISGRPTPTVTWSKDGKPLKL-----SGRVQIETTASSTSLVIKNAERSDSGKYTLTLKNPAGEKSATINVKV 74 (74)
T ss_pred CEEEEeeEeeeCCCeEEEEECCEEcCC-----CCeEEEEECCCeEEEEECCCCcCcCEEEEEEEECCCccEEEEEEEEC
Confidence 368999999999999999999988731 122222 23457999999999999999999999999998888764
No 107
>cd05725 Ig3_Robo Third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Ig3_Robo: domain similar to the third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni
Probab=99.32 E-value=6.9e-12 Score=92.88 Aligned_cols=69 Identities=28% Similarity=0.601 Sum_probs=58.3
Q ss_pred EEEEEEEeeecCCeeEEEECCEEEEeccCCccceEEEccCceEEEcCCCCCCCeEEEEEEEeCCceeEEEEEEEE
Q psy15127 258 NRLSCFAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQV 332 (633)
Q Consensus 258 ~~l~C~~~g~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v 332 (633)
++|.|.+.|.|+|.+.|+|++..+. ..+.....++.|.|.++..+|+|.|+|.|.|..|..+.++.|.|
T Consensus 1 v~l~C~~~g~P~p~v~W~k~~~~~~------~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V 69 (69)
T cd05725 1 VEFQCEVGGDPVPTVLWRKEDGELP------KGRAEILDDKSLKIRNVTAGDEGSYTCEAENMVGKIEASASLTV 69 (69)
T ss_pred CEEEEECccCCCCEEEEEECCccCC------CCcEEEeeCCEEEECcCChhHCEEEEEEEEcCCCcEEEEEEEEC
Confidence 4799999999999999999987552 13344456778999999999999999999999999988887764
No 108
>cd05763 Ig_1 Subgroup of the immunoglobulin (Ig) superfamily. Ig_1: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=99.32 E-value=1.1e-11 Score=93.61 Aligned_cols=69 Identities=38% Similarity=0.738 Sum_probs=56.9
Q ss_pred EEEEEEEeccCCCeEEEEeCCccC-CC---CCeEEc-ccceEEEccCCCCCCeEEEEEEEeCCceEEEEEEEEE
Q psy15127 89 VEFVCRVGGDPLPTILWRRDDGKM-PT---GRAKIL-DDRSLQIENVGPQDEGLYICDVENLVGSISLRASLTV 157 (633)
Q Consensus 89 ~~L~C~~~~~p~p~i~W~~~~~~i-~~---~~~~~~-~~~~L~i~~v~~~d~G~Y~C~~~n~~g~~s~~~~l~V 157 (633)
++|.|.+.|.|.|.++|+|++... +. .+.... .++.|.|.+++.+|+|.|+|.|.|..|..+..+.|.|
T Consensus 1 a~l~C~~~G~P~P~v~W~k~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~A~N~~G~~~~~~~l~V 74 (75)
T cd05763 1 ARLECAATGHPTPQIAWQKDGGTDFPAARERRMHVMPEDDVFFIVDVKIEDTGVYSCTAQNTAGSISANATLTV 74 (75)
T ss_pred CEeEeecccccCCEEEEEeCCCccCCcccccceEEecCCCEEEEeeCCcccCEEEEEEEEcCCCEEEeeEEEEE
Confidence 479999999999999999998642 22 222222 3568999999999999999999999999999888887
No 109
>cd05869 Ig5_NCAM-1 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). Ig5_NCAM-1: The fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM) and heterophilic (NCAM-non-NCAM) interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (tr
Probab=99.31 E-value=1.8e-11 Score=97.52 Aligned_cols=81 Identities=26% Similarity=0.479 Sum_probs=62.4
Q ss_pred ecCCceEEEEEEEeeecCCeeEEEECCEEEEeccCCccceEEEcc---CceEEEcCCCCCCCeEEEEEEEeCCceeEEEE
Q psy15127 252 WNHPRVNRLSCFAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQ---EGTLRIQGVQKEDAGFFVCSALSVAGSTTVRA 328 (633)
Q Consensus 252 ~~~g~~~~l~C~~~g~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~---~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~ 328 (633)
...|+.++|.|.+.|.|.|.++|++++..+.........++.... .+.|.|.++..+|.|.|+|.|.|..|..+.++
T Consensus 14 ~~~g~~v~l~C~~~G~P~P~v~W~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~ 93 (97)
T cd05869 14 MELEEQITLTCEASGDPIPSITWRTSTRNISSEEKTLDGHIVVRSHARVSSLTLKYIQYTDAGEYLCTASNTIGQDSQSM 93 (97)
T ss_pred EEcCCCEEEEEEeeEeCCCEEEEEECCccccCCccccCccEEEEcCccEEEEEEecCccCcCEEEEEEEecCCCCeeEEE
Confidence 344799999999999999999999998765321111112232222 24799999999999999999999999999988
Q ss_pred EEEE
Q psy15127 329 FLQV 332 (633)
Q Consensus 329 ~l~v 332 (633)
.|.|
T Consensus 94 ~l~v 97 (97)
T cd05869 94 YLEV 97 (97)
T ss_pred EEEC
Confidence 8764
No 110
>cd04968 Ig3_Contactin_like Third Ig domain of contactin. Ig3_Contactin_like: Third Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week
Probab=99.31 E-value=2.6e-11 Score=94.72 Aligned_cols=79 Identities=24% Similarity=0.421 Sum_probs=64.9
Q ss_pred eeEEecCCceEEEEEEEeeecCCeeEEEECCEEEEeccCCccceEEEccCceEEEcCCCCCCCeEEEEEEEeCCceeEEE
Q psy15127 248 SLLIWNHPRVNRLSCFAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVR 327 (633)
Q Consensus 248 ~~~~~~~g~~~~l~C~~~g~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~ 327 (633)
......+|+.+.|.|.+.|.|.|.+.|++++..+.. . ... ...++.|.|.+++.+|+|.|+|.|.|..|....+
T Consensus 9 ~~~~~~~g~~v~l~C~~~g~P~p~v~W~k~~~~~~~--~---~~~-~~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~ 82 (88)
T cd04968 9 KDTYALKGQNVTLECFALGNPVPQIKWRKVDGSMPS--S---AEI-SMSGAVLKIPNIQFEDEGTYECEAENIKGKDTHQ 82 (88)
T ss_pred CceEEeCCCcEEEEEEeeEeCCCEEEEEECCCcCCC--c---cEE-EEeCCEEEECCCCcccCEEEEEEEEECCCcEEEE
Confidence 334566899999999999999999999998875421 1 111 1356799999999999999999999999999998
Q ss_pred EEEEE
Q psy15127 328 AFLQV 332 (633)
Q Consensus 328 ~~l~v 332 (633)
+.|.|
T Consensus 83 ~~l~V 87 (88)
T cd04968 83 GRIYV 87 (88)
T ss_pred EEEEE
Confidence 88876
No 111
>cd05859 Ig4_PDGFR-alpha Fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha. IG4_PDGFR-alpha: The fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha. PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFR alpha binds to all three PDGFs, whereas the PDGFR beta (not included in this group) binds only to PDGF-B. PDGF alpha is organized as an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFR alpha and PDGFR beta are essential for normal development.
Probab=99.31 E-value=2.2e-11 Score=96.90 Aligned_cols=81 Identities=17% Similarity=0.276 Sum_probs=65.5
Q ss_pred eEEecCCceEEEEEEEeeecCCeeEEEECCEEEEeccCCccceEEE--------ccCceEEEcCCCCCCCeEEEEEEEeC
Q psy15127 249 LLIWNHPRVNRLSCFAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHV--------TQEGTLRIQGVQKEDAGFFVCSALSV 320 (633)
Q Consensus 249 ~~~~~~g~~~~l~C~~~g~p~~~v~W~~~g~~~~~~~~~~~~~~~~--------~~~~~l~i~~~~~~d~G~Y~C~a~n~ 320 (633)
......++.+.|.|.+.|+|+|.+.|+|||.++.... ..... ...++|.|.++..+|+|.|+|.|.|.
T Consensus 12 ~~~~~~~~~~~l~~~v~g~P~P~v~W~kdg~~l~~~~----~~~~~~~~~~~~~~~~s~L~I~~v~~~D~G~Ytc~A~N~ 87 (101)
T cd05859 12 LEFANLHEVKEFVVEVEAYPPPQIRWLKDNRTLIENL----TEITTSEHNVQETRYVSKLKLIRAKEEDSGLYTALAQNE 87 (101)
T ss_pred eEEEecCCcEEEEEEEEEeCCCceEEEECCEECcCCc----ceEEeccccccceeeccEEEEeeCCHHHCEEEEEEEEcC
Confidence 4556677999999999999999999999999875211 11111 12358999999999999999999999
Q ss_pred CceeEEEEEEEEE
Q psy15127 321 AGSTTVRAFLQVR 333 (633)
Q Consensus 321 ~g~~~~~~~l~v~ 333 (633)
.|..+.++.|.|.
T Consensus 88 ~g~~~~t~~l~V~ 100 (101)
T cd05859 88 DAVKSYTFALQIQ 100 (101)
T ss_pred CceEEEEEEEEEE
Confidence 9999999888875
No 112
>cd05853 Ig6_Contactin-4 Sixth Ig domain of contactin-4. Ig6_Contactin-4: sixth Ig domain of the neural cell adhesion molecule contactin-4. Contactins are neural cell adhesion molecules, and are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. Highest expresson of contactin-4 is in testes, thyroid, small intestine, uterus and brain. Contactin-4 plays a role in the response of neuroblastoma cells to differentiating agents, such as retinoids. The contactin 4 gene is associated with cerebellar degeneration in spinocerebellar ataxia type 16.
Probab=99.31 E-value=1.5e-11 Score=93.53 Aligned_cols=77 Identities=22% Similarity=0.287 Sum_probs=62.1
Q ss_pred ceEEEEEEEeeec--CCeeEEEECCEEEEeccCCccceEEE----ccCceEEEcCCCCCCCeEEEEEEEeCCceeEEEEE
Q psy15127 256 RVNRLSCFAEGSP--LPSVFWTQEGSQVLMFPGNAYGHLHV----TQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRAF 329 (633)
Q Consensus 256 ~~~~l~C~~~g~p--~~~v~W~~~g~~~~~~~~~~~~~~~~----~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~ 329 (633)
+++.|.|.+.+.| ++.+.|++||..+.... ...++.. ...+.|.|.+++..|+|.|+|.|.|..+..+.++.
T Consensus 1 ~~~~l~C~v~~d~~l~~~~~W~~dg~~i~~~~--~~~~~~~~~~~~~~~~L~I~nv~~~dsG~YtC~a~n~~~~~~a~a~ 78 (85)
T cd05853 1 ESIVLPCQVSHDHSLDIVFTWSFNGHLIDFQK--DGDHFERVGGQDSAGDLMIRSIQLKHAGKYVCMVQTSVDKLSAAAD 78 (85)
T ss_pred CcEEEEEEeccCCCCCcEEEEEECCEECcccC--CCccEEEeccCCCCCcEEEecCCHHHCEEEEEEEEcccCceEEEEE
Confidence 4688999998754 67999999999885311 1123333 24568999999999999999999999999999999
Q ss_pred EEEEe
Q psy15127 330 LQVRE 334 (633)
Q Consensus 330 l~v~~ 334 (633)
|.|..
T Consensus 79 L~V~~ 83 (85)
T cd05853 79 LIVRG 83 (85)
T ss_pred EEEec
Confidence 99985
No 113
>cd05738 Ig2_RPTP_IIa_LAR_like Second immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. Ig2_RPTP_IIa_LAR_like: domain similar to the second immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple Ig-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains.
Probab=99.30 E-value=1.8e-11 Score=91.79 Aligned_cols=72 Identities=28% Similarity=0.490 Sum_probs=59.5
Q ss_pred EEEEEEEeeecCCeeEEEECCEEEEeccCCccceEEEccCceEEEcCCCCCCCeEEEEEEEeCCcee-EEEEEEEE
Q psy15127 258 NRLSCFAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGST-TVRAFLQV 332 (633)
Q Consensus 258 ~~l~C~~~g~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~-~~~~~l~v 332 (633)
++|.|.+.|.|.|.+.|++++..+... ...++....++.|.|.++..+|+|.|+|.|.|..|.. +..+.|.|
T Consensus 1 a~l~C~~~G~P~p~v~W~k~~~~~~~~---~~~~~~~~~~g~L~i~~~~~~D~G~Y~C~a~N~~G~~~s~~a~l~v 73 (74)
T cd05738 1 ATMLCAASGNPDPEITWFKDFLPVDTT---SNGRIKQLRSGALQIENSEESDQGKYECVATNSAGTRYSAPANLYV 73 (74)
T ss_pred CEEEEEEeEecCCEEEEEECCEECccC---CCCCEEEcCCcEEEECCCChhhCEEEEEEEECCCCceEcccEEEEE
Confidence 479999999999999999999876421 2245566667799999999999999999999999985 67777765
No 114
>cd05865 Ig1_NCAM-1 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. Ig1_NCAM-1: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (trans
Probab=99.30 E-value=1.4e-11 Score=96.99 Aligned_cols=80 Identities=16% Similarity=0.294 Sum_probs=62.4
Q ss_pred eEEecCCceEEEEEEEeeecC-CeeEEEE-CCEEEEeccCCccceEEEcc----CceEEEcCCCCCCCeEEEEEEEeCC-
Q psy15127 249 LLIWNHPRVNRLSCFAEGSPL-PSVFWTQ-EGSQVLMFPGNAYGHLHVTQ----EGTLRIQGVQKEDAGFFVCSALSVA- 321 (633)
Q Consensus 249 ~~~~~~g~~~~l~C~~~g~p~-~~v~W~~-~g~~~~~~~~~~~~~~~~~~----~~~l~i~~~~~~d~G~Y~C~a~n~~- 321 (633)
...+..|++++|.|.+.|.|. |.+.|++ ++..+.. ...++.... .++|.|.++..+|+|.|+|.|.|..
T Consensus 9 ~~~v~~G~~v~l~C~v~G~P~~p~i~W~~~~g~~l~~----~~~r~~v~~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~~ 84 (96)
T cd05865 9 QGEISVGESKFFLCQVAGEAKDKDISWFSPNGEKLTP----NQQRISVVRNDDYSSTLTIYNANIDDAGIYKCVVSNEDE 84 (96)
T ss_pred ccEECCCCeEEEEEEEeCCCCCCEEEEECCCCcCccc----cCCeEEEEeCCCCceEEEEeccChhhCEEEEEEEEcCCC
Confidence 345778999999999999995 7999998 7765531 112332221 2589999999999999999999996
Q ss_pred ceeEEEEEEEE
Q psy15127 322 GSTTVRAFLQV 332 (633)
Q Consensus 322 g~~~~~~~l~v 332 (633)
|..+.++.|.|
T Consensus 85 g~~~~s~~l~v 95 (96)
T cd05865 85 GESEATVNVKI 95 (96)
T ss_pred CcEEEEEEEEE
Confidence 88888888776
No 115
>cd05870 Ig5_NCAM-2 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM). Ig5_NCAM-2: the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.
Probab=99.30 E-value=1.9e-11 Score=97.64 Aligned_cols=84 Identities=27% Similarity=0.455 Sum_probs=63.9
Q ss_pred eEEecCCceEEEEEEEeeecCCeeEEEEC--CEEEEeccCCccceEEEc---cCceEEEcCCCCCCCeEEEEEEEeCCce
Q psy15127 249 LLIWNHPRVNRLSCFAEGSPLPSVFWTQE--GSQVLMFPGNAYGHLHVT---QEGTLRIQGVQKEDAGFFVCSALSVAGS 323 (633)
Q Consensus 249 ~~~~~~g~~~~l~C~~~g~p~~~v~W~~~--g~~~~~~~~~~~~~~~~~---~~~~l~i~~~~~~d~G~Y~C~a~n~~g~ 323 (633)
...+.+|++++|.|.+.|.|.|.+.|+++ +..+.........++.+. ....|.|.+++.+|+|.|+|.|.|..|.
T Consensus 10 ~~~~~~G~~v~l~C~~~G~P~p~i~W~k~~~g~~~~~~~~~~~~r~~v~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~ 89 (98)
T cd05870 10 NETTVENGAATLSCKAEGEPIPEITWKRASDGHTFSEGDKSPDGRIEVKGQHGESSLHIKDVKLSDSGRYDCEAASRIGG 89 (98)
T ss_pred cEEEcCCCcEEEEEecccCCCCeEEEEECCCCceeccCCcCcCceEEEeecCCeeEEEEeeCCcCCCEEEEEEEeccCCc
Confidence 45677899999999999999999999994 433321111112344443 2357999999999999999999999999
Q ss_pred eEEEEEEEE
Q psy15127 324 TTVRAFLQV 332 (633)
Q Consensus 324 ~~~~~~l~v 332 (633)
...++.|.|
T Consensus 90 ~~~~~~l~~ 98 (98)
T cd05870 90 HQKSMYLDI 98 (98)
T ss_pred ceeEEEEeC
Confidence 988887764
No 116
>cd05728 Ig4_Contactin-2-like Fourth Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins. Ig4_Contactin-2-like: fourth Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.
Probab=99.30 E-value=2.2e-11 Score=94.23 Aligned_cols=78 Identities=27% Similarity=0.431 Sum_probs=65.7
Q ss_pred eEEecCCceEEEEEEEeeecCCeeEEEECCEEEEeccCCccceEEEccCceEEEcCCCCCCCeEEEEEEEeCCceeEEEE
Q psy15127 249 LLIWNHPRVNRLSCFAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRA 328 (633)
Q Consensus 249 ~~~~~~g~~~~l~C~~~g~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~ 328 (633)
...+..|+.+.|.|.+.|.|.|.+.|+++|..+. ...++.. .++.|.|.++..+|.|.|+|.|.|..|....++
T Consensus 8 ~~~~~~G~~~~l~C~~~g~p~p~v~W~k~g~~~~-----~~~~~~~-~~~~L~i~~~~~~D~G~Y~C~a~N~~G~~~~~~ 81 (85)
T cd05728 8 DTEADIGSSLRWECKASGNPRPAYRWLKNGQPLA-----SENRIEV-EAGDLRITKLSLSDSGMYQCVAENKHGTIYASA 81 (85)
T ss_pred ccEEcCCCcEEEEEEeeEeCCCEEEEEECCEECC-----CCCeEEE-eCCEEEEeeCCHHHCEEEEEEEECCCCeEEEEE
Confidence 3566788999999999999999999999999764 1223333 456899999999999999999999999999888
Q ss_pred EEEE
Q psy15127 329 FLQV 332 (633)
Q Consensus 329 ~l~v 332 (633)
.|.|
T Consensus 82 ~l~V 85 (85)
T cd05728 82 ELAV 85 (85)
T ss_pred EEEC
Confidence 8764
No 117
>cd04974 Ig3_FGFR Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Ig3_FGFR: third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs.
Probab=99.30 E-value=1e-11 Score=97.26 Aligned_cols=73 Identities=36% Similarity=0.510 Sum_probs=57.8
Q ss_pred CCeEEEEEEEeccCCCeEEEEeCC----ccCC-CCC-e-EE----------cccceEEEccCCCCCCeEEEEEEEeCCce
Q psy15127 86 GSVVEFVCRVGGDPLPTILWRRDD----GKMP-TGR-A-KI----------LDDRSLQIENVGPQDEGLYICDVENLVGS 148 (633)
Q Consensus 86 G~~~~L~C~~~~~p~p~i~W~~~~----~~i~-~~~-~-~~----------~~~~~L~i~~v~~~d~G~Y~C~~~n~~g~ 148 (633)
|+.++|.|.+.|.|.|.|+|+|++ ..+. .+. . .. .....|.|.+++.+|+|.|+|.|.|..|.
T Consensus 1 G~~v~l~C~v~g~P~P~i~W~k~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~ 80 (90)
T cd04974 1 GSDVEFHCKVYSDAQPHIQWLKHVEVNGSKYGPDGLPYVTVLKVAGINTTDNESEVLYLRNVSFDDAGEYTCLAGNSIGP 80 (90)
T ss_pred CCcEEEEEEEeCCCCCeEEEEEecccCCceeCCCCCceEEEEEecCCcccccccceEEEeccccccCcEEEEEeecccCc
Confidence 688999999999999999999964 2221 111 0 11 12357999999999999999999999999
Q ss_pred EEEEEEEEEE
Q psy15127 149 ISLRASLTVH 158 (633)
Q Consensus 149 ~s~~~~l~V~ 158 (633)
.++.+.|.|.
T Consensus 81 ~~~sa~L~V~ 90 (90)
T cd04974 81 SHHSAWLTVL 90 (90)
T ss_pred ccCCEEEEeC
Confidence 9989988874
No 118
>cd04967 Ig1_Contactin First Ig domain of contactin. Ig1_Contactin: First Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 weeks postnata
Probab=99.29 E-value=3.3e-11 Score=94.77 Aligned_cols=79 Identities=28% Similarity=0.478 Sum_probs=63.9
Q ss_pred CeeeeCCCceEEEcC---CeEEEEEEEeccCCCeEEEEeCCccCCC--CCeEEcccceEEEccCCC-CCCeEEEEEEEeC
Q psy15127 72 PFPISEPSDATVLSG---SVVEFVCRVGGDPLPTILWRRDDGKMPT--GRAKILDDRSLQIENVGP-QDEGLYICDVENL 145 (633)
Q Consensus 72 p~~~~~~~~~~~~~G---~~~~L~C~~~~~p~p~i~W~~~~~~i~~--~~~~~~~~~~L~i~~v~~-~d~G~Y~C~~~n~ 145 (633)
|.|+.+|.+..+.+| +.+.|.|.+.|.|.|.++|+|++..+.. .......++.|.|.++.. +|+|.|+|.|.|.
T Consensus 2 P~f~~~p~~~~~~~~~~~~~~~l~C~~~g~p~p~i~W~k~~~~l~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~a~N~ 81 (91)
T cd04967 2 PVFEEQPDDTIFPEESDEGKVSLNCRARGSPPPTYRWLMNGTEIDDEPDSRYSLVGGNLVISNPSKAKDAGRYQCLASNI 81 (91)
T ss_pred CeeEeCCCCEEccCCCCCCEEEEEEeeeEcCCCEEEEEECCEECCCCCCCCEEEECCEEEEecCCccCCCEEEEEEEEcC
Confidence 778888888765544 6799999999999999999999998842 223334567899998874 8999999999999
Q ss_pred CceEE
Q psy15127 146 VGSIS 150 (633)
Q Consensus 146 ~g~~s 150 (633)
.|...
T Consensus 82 ~G~~~ 86 (91)
T cd04967 82 VGTVL 86 (91)
T ss_pred CCEEE
Confidence 99743
No 119
>cd05857 Ig2_FGFR Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. Ig2_FGFR: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three IG-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin sulfate proteoglycans.
Probab=99.29 E-value=2.7e-11 Score=94.14 Aligned_cols=81 Identities=23% Similarity=0.380 Sum_probs=64.3
Q ss_pred EEecCCceEEEEEEEeeecCCeeEEEECCEEEEeccCCccceEEE-ccCceEEEcCCCCCCCeEEEEEEEeCCceeEEEE
Q psy15127 250 LIWNHPRVNRLSCFAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHV-TQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRA 328 (633)
Q Consensus 250 ~~~~~g~~~~l~C~~~g~p~~~v~W~~~g~~~~~~~~~~~~~~~~-~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~ 328 (633)
..+..|+.+.|.|.+.|.|.|.+.|+++|..+... ........ .....|.|.++..+|+|.|+|.|.|..|....++
T Consensus 4 ~~v~~G~~~~L~C~~~g~P~p~i~W~k~g~~l~~~--~~~~~~~~~~~~~~l~i~~~~~~D~G~Y~C~a~N~~G~~~~~~ 81 (85)
T cd05857 4 HAVPAANTVKFRCPAAGNPTPTMRWLKNGKEFKQE--HRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSINHTY 81 (85)
T ss_pred EEcCCCCEEEEEEEcCCCCCCEEEEEECCEECCCC--CceeeeEEeCCceEEEEccCCcccCEEEEEEEEeCCCEEEEEE
Confidence 34667899999999999999999999999887421 11111122 2345799999999999999999999999999988
Q ss_pred EEEE
Q psy15127 329 FLQV 332 (633)
Q Consensus 329 ~l~v 332 (633)
.|.|
T Consensus 82 ~l~v 85 (85)
T cd05857 82 HLDV 85 (85)
T ss_pred EEEC
Confidence 8764
No 120
>cd04970 Ig6_Contactin_like Sixth Ig domain of contactin. Ig6_Contactin_like: Sixth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week
Probab=99.29 E-value=2.7e-11 Score=93.91 Aligned_cols=79 Identities=27% Similarity=0.378 Sum_probs=62.2
Q ss_pred ceEEEEEEEeeecCC--eeEEEECCEEEEeccC-Cccce-EEEccCceEEEcCCCCCCCeEEEEEEEeCCceeEEEEEEE
Q psy15127 256 RVNRLSCFAEGSPLP--SVFWTQEGSQVLMFPG-NAYGH-LHVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQ 331 (633)
Q Consensus 256 ~~~~l~C~~~g~p~~--~v~W~~~g~~~~~~~~-~~~~~-~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~ 331 (633)
+.+.|.|.+.|.|.| .+.|+++|..+..... ....+ ......+.|.|.+++..|+|.|+|.|.|..|..+.++.|.
T Consensus 1 e~~~L~C~~~g~P~p~i~~~W~~~g~~i~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~~~~~l~ 80 (85)
T cd04970 1 ESITLQCHASHDPTLDLTFTWSFNGVPIDFDKDGGHYRRVGGKDSNGDLMIRNAQLKHAGKYTCTAQTVVDSLSASADLI 80 (85)
T ss_pred CcEEEEEEEecCCCCCeEEEEEECCeEeeccCCCccEEEEecccccceEEEccCCHHhCeeeEEEEecCCCcEEEEEEEE
Confidence 468999999999987 6799999998753211 11111 1223467899999999999999999999999999999999
Q ss_pred EEe
Q psy15127 332 VRE 334 (633)
Q Consensus 332 v~~ 334 (633)
|..
T Consensus 81 V~~ 83 (85)
T cd04970 81 VRG 83 (85)
T ss_pred EEC
Confidence 985
No 121
>cd05739 Ig3_RPTP_IIa_LAR_like Third immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. Ig3_RPTP_IIa_LAR_like: domain similar to the third immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple IG-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains. Included in this group is Drosophila LAR (DLAR).
Probab=99.29 E-value=3.2e-11 Score=88.65 Aligned_cols=68 Identities=22% Similarity=0.463 Sum_probs=54.6
Q ss_pred CceEEEEEEEeeecCCeeEEEECCEEEEeccCCccceEEEccCceEEEcCCCCCCCeEEEEEEEeCCceeEEEEEE
Q psy15127 255 PRVNRLSCFAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRAFL 330 (633)
Q Consensus 255 g~~~~l~C~~~g~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l 330 (633)
|+.++|.|.+.|.|.|.|.|++++..+.. ..+.. .....|.|.++. |+|.|+|.|.|..|....++.|
T Consensus 1 G~~v~L~C~a~G~P~P~v~W~k~g~~l~~-----~~~~~-~~~~~L~i~~~~--d~G~Y~C~A~N~~G~~~~~a~l 68 (69)
T cd05739 1 GGSVNLTCVAVGAPMPYVKWMKGGEELTK-----EDEMP-VGRNVLELTNIY--ESANYTCVAISSLGMIEATAQV 68 (69)
T ss_pred CCeEEEEEEeeecCCCEEEEEECCEECCC-----cccee-cCccEEEEeccc--cCeeEEEEEEeCCCEEEEEEEE
Confidence 57899999999999999999999987631 11222 234478999874 7899999999999998888765
No 122
>cd05760 Ig2_PTK7 Second immunoglobulin (Ig)-like domain of protein tyrosine kinase (PTK) 7, also known as CCK4. Ig2_PTK7: domain similar to the second immunoglobulin (Ig)-like domain in protein tyrosine kinase (PTK) 7, also known as CCK4. PTK7 is a subfamily of the receptor protein tyrosine kinase family, and is referred to as an RPTK-like molecule. RPTKs transduce extracellular signals across the cell membrane, and play important roles in regulating cell proliferation, migration, and differentiation. PTK7 is organized as an extracellular portion having seven Ig-like domains, a single transmembrane region, and a cytoplasmic tyrosine kinase-like domain. PTK7 is considered a pseudokinase as it has several unusual residues in some of the highly conserved tyrosine kinase (TK) motifs; it is predicted to lack TK activity. PTK7 may function as a cell-adhesion molecule. PTK7 mRNA is expressed at high levels in placenta, melanocytes, liver, lung, pancreas, and kidney. PTK7 is overexpressed in s
Probab=99.28 E-value=3.3e-11 Score=91.16 Aligned_cols=71 Identities=25% Similarity=0.524 Sum_probs=55.0
Q ss_pred EEEEEEEeeecCCeeEEEECCEEEEeccCCccceEEE-ccCceEEEcCCCCCCCeEEEEEEEeCCceeEEEEEEEE
Q psy15127 258 NRLSCFAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHV-TQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQV 332 (633)
Q Consensus 258 ~~l~C~~~g~p~~~v~W~~~g~~~~~~~~~~~~~~~~-~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v 332 (633)
++|.|.+.|.|.|.+.|+|+|..+... ..+... ...+.|.|.++..+|+|.|+|.|.|..|....+..+.+
T Consensus 1 v~L~C~~~g~P~p~v~W~k~g~~l~~~----~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~s~~~~~l 72 (77)
T cd05760 1 VTLRCHIDGHPRPTYQWFRDGTPLSDG----QGNYSVSSKERTLTLRSAGPDDSGLYYCCAHNAFGSVCSSQNFTL 72 (77)
T ss_pred CEEEEEeeecCCCcEEEEECCEECCCC----CccEEEeCCCCEEEEeeCCcccCEEEEEEEEeCCCeEeeCceEEE
Confidence 479999999999999999999876421 112222 23468999999999999999999999998754444443
No 123
>cd05747 Ig5_Titin_like M5, fifth immunoglobulin (Ig)-like domain of human titin C terminus and similar proteins. Ig5_Titin_like: domain similar to the M5, fifth immunoglobulin (Ig)-like domain from the human titin C terminus. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic; depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone, and appears to function similar to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching.
Probab=99.28 E-value=5e-11 Score=93.94 Aligned_cols=78 Identities=26% Similarity=0.425 Sum_probs=64.1
Q ss_pred eeEEecCCceEEEEEEEeeecCCeeEEEECCEEEEeccCCccceEEEc---cCceEEEcCCCCCCCeEEEEEEEeCCcee
Q psy15127 248 SLLIWNHPRVNRLSCFAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVT---QEGTLRIQGVQKEDAGFFVCSALSVAGST 324 (633)
Q Consensus 248 ~~~~~~~g~~~~l~C~~~g~p~~~v~W~~~g~~~~~~~~~~~~~~~~~---~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~ 324 (633)
....+..|+.+.|.|.+.|+|.|.+.|+++|..+.. ..+..+. ..+.|.|.++..+|+|.|+|.|.|..|..
T Consensus 11 ~~~~~~~G~~~~L~C~~~g~P~p~v~W~k~g~~l~~-----~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~N~~G~~ 85 (92)
T cd05747 11 RSLTVSEGESARFSCDVDGEPAPTVTWMREGQIIVS-----SQRHQITSTEYKSTFEISKVQMSDEGNYTVVVENSEGKQ 85 (92)
T ss_pred ccEEEeCCCcEEEEEEEeecCCCEEEEEECCEECCC-----CCcEEEEEcCCeeEEEECCCCcccCEeEEEEEEcCCCCE
Confidence 456788899999999999999999999999987641 1222222 24589999999999999999999999998
Q ss_pred EEEEEE
Q psy15127 325 TVRAFL 330 (633)
Q Consensus 325 ~~~~~l 330 (633)
+.++.|
T Consensus 86 ~~~~~l 91 (92)
T cd05747 86 EAQFTL 91 (92)
T ss_pred eEEEEe
Confidence 887765
No 124
>cd05873 Ig_Sema4D_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4D. Ig_Sema4D_like; Immunoglobulin (Ig)-like domain of Sema4D. Sema4D is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4D has extracellular Sema and Ig domains, a transmembrane domain, and a short cytoplasmic domain. Sema4D plays a part in the development of GABAergic synapses. Sema4D in addition is an immune semaphorin. It is abundant on resting T cells; its expression is weak on resting B cells and antigen presenting cells (APCs), but is upregulated by various stimuli. The receptor used by Sema4D in the immune system is CD72. Sem4D enhances the activation of B cells and DCs through binding CD72, perhaps by reducing CD72s inhibitory signals. The receptor used by Sema4D in the non-lymphatic tissues is plexin-B1. Sem4D is anchored to the cell surface but its extracellular domain can be released from the cell surface by a metalloproteas
Probab=99.27 E-value=3.8e-11 Score=91.62 Aligned_cols=68 Identities=24% Similarity=0.384 Sum_probs=58.2
Q ss_pred CCCceEEEcCCeEEEEEEEeccCCCeEEEEeCCccCCCC-CeEEcccceEEEccCCCCCCeEEEEEEEeC
Q psy15127 77 EPSDATVLSGSVVEFVCRVGGDPLPTILWRRDDGKMPTG-RAKILDDRSLQIENVGPQDEGLYICDVENL 145 (633)
Q Consensus 77 ~~~~~~~~~G~~~~L~C~~~~~p~p~i~W~~~~~~i~~~-~~~~~~~~~L~i~~v~~~d~G~Y~C~~~n~ 145 (633)
.|.+..+.+|+++.|.|.+.+ +.+.|.|+++|.++..+ .+....++.|.|.+++.+|+|.|+|.+.+.
T Consensus 2 ~P~~~~v~~G~~v~L~C~~~~-~~~~i~W~~ng~~i~~~~~r~~~~~~~L~I~nv~~~DsG~Y~C~a~e~ 70 (87)
T cd05873 2 DPRQRTFKLGNNAELKCSPKS-NLARVVWKFDGKVLTPESAKYLLYRDGLLIFNASEADAGRYQCLSVEK 70 (87)
T ss_pred CcceEEEECCCCEEEEEECCC-CCCeEEEEECCEECCCCCceEEEECCcEEEeCCCHHHCEEEEEEEEec
Confidence 467888999999999999864 67899999999998654 344556778999999999999999999865
No 125
>cd05765 Ig_3 Subgroup of the immunoglobulin (Ig) superfamily. Ig_3: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=99.27 E-value=2.7e-11 Score=93.26 Aligned_cols=72 Identities=33% Similarity=0.611 Sum_probs=58.3
Q ss_pred CCeEEEEEEEeccCCCeEEEEeCCc---cC--CC----CCeEEcccceEEEccCCCCCCeEEEEEEEeCCceEEEEEEEE
Q psy15127 86 GSVVEFVCRVGGDPLPTILWRRDDG---KM--PT----GRAKILDDRSLQIENVGPQDEGLYICDVENLVGSISLRASLT 156 (633)
Q Consensus 86 G~~~~L~C~~~~~p~p~i~W~~~~~---~i--~~----~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~n~~g~~s~~~~l~ 156 (633)
|+.++|.|.+.|.|.|.++|+|++. .+ .. .+......+.|.|.+++.+|+|.|+|.|.|..|.....+.|.
T Consensus 1 G~~v~l~C~~~g~P~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~ 80 (81)
T cd05765 1 GETASFHCDVTGRPPPEITWEKQVHGKENLIMRPNHVRGNVVVTNIGQLVIYNAQPQDAGLYTCTARNSGGLLRANFPLS 80 (81)
T ss_pred CCcEEEEeeccccCCCcEEEEecCCCCcceeecCCcccCCEEEccccEEEEccCCcccCEEEEEEEecCCceEEEEEEEe
Confidence 7899999999999999999999742 11 11 122233457899999999999999999999999988888887
Q ss_pred E
Q psy15127 157 V 157 (633)
Q Consensus 157 V 157 (633)
|
T Consensus 81 v 81 (81)
T cd05765 81 V 81 (81)
T ss_pred C
Confidence 5
No 126
>cd05763 Ig_1 Subgroup of the immunoglobulin (Ig) superfamily. Ig_1: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=99.27 E-value=2.2e-11 Score=91.85 Aligned_cols=73 Identities=34% Similarity=0.661 Sum_probs=58.2
Q ss_pred EEEEEEEeeecCCeeEEEECCEEEEeccCCccceEEEc-cCceEEEcCCCCCCCeEEEEEEEeCCceeEEEEEEEE
Q psy15127 258 NRLSCFAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVT-QEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQV 332 (633)
Q Consensus 258 ~~l~C~~~g~p~~~v~W~~~g~~~~~~~~~~~~~~~~~-~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v 332 (633)
++|.|.+.|.|.|.++|+|+|.... +.....++... .++.|.|.++..+|+|.|+|.|.|..|..+..+.|.|
T Consensus 1 a~l~C~~~G~P~P~v~W~k~~~~~~--~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~A~N~~G~~~~~~~l~V 74 (75)
T cd05763 1 ARLECAATGHPTPQIAWQKDGGTDF--PAARERRMHVMPEDDVFFIVDVKIEDTGVYSCTAQNTAGSISANATLTV 74 (75)
T ss_pred CEeEeecccccCCEEEEEeCCCccC--CcccccceEEecCCCEEEEeeCCcccCEEEEEEEEcCCCEEEeeEEEEE
Confidence 4799999999999999999986432 11122333332 3468999999999999999999999999999888877
No 127
>cd05765 Ig_3 Subgroup of the immunoglobulin (Ig) superfamily. Ig_3: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=99.27 E-value=3.3e-11 Score=92.76 Aligned_cols=78 Identities=28% Similarity=0.519 Sum_probs=60.2
Q ss_pred CceEEEEEEEeeecCCeeEEEECCE---EEEeccCCccceEEEccCceEEEcCCCCCCCeEEEEEEEeCCceeEEEEEEE
Q psy15127 255 PRVNRLSCFAEGSPLPSVFWTQEGS---QVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQ 331 (633)
Q Consensus 255 g~~~~l~C~~~g~p~~~v~W~~~g~---~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~ 331 (633)
|+.+.|.|.+.|.|.|.+.|++++. .+...+.....++.....+.|.|.++..+|+|.|+|.|.|..|.....+.|.
T Consensus 1 G~~v~l~C~~~g~P~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~ 80 (81)
T cd05765 1 GETASFHCDVTGRPPPEITWEKQVHGKENLIMRPNHVRGNVVVTNIGQLVIYNAQPQDAGLYTCTARNSGGLLRANFPLS 80 (81)
T ss_pred CCcEEEEeeccccCCCcEEEEecCCCCcceeecCCcccCCEEEccccEEEEccCCcccCEEEEEEEecCCceEEEEEEEe
Confidence 5789999999999999999999742 2221121112233444557899999999999999999999999998888876
Q ss_pred E
Q psy15127 332 V 332 (633)
Q Consensus 332 v 332 (633)
|
T Consensus 81 v 81 (81)
T cd05765 81 V 81 (81)
T ss_pred C
Confidence 4
No 128
>cd05731 Ig3_L1-CAM_like Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). Ig3_L1-CAM_like: domain similar to the third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM and human neurofascin.
Probab=99.27 E-value=2.8e-11 Score=90.43 Aligned_cols=70 Identities=30% Similarity=0.475 Sum_probs=57.2
Q ss_pred EEEEEEEeeecCCeeEEEECCEEEEeccCCccceEEEccCceEEEcCCCCCCCeEEEEEEEeCCceeEEEEEEEE
Q psy15127 258 NRLSCFAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQV 332 (633)
Q Consensus 258 ~~l~C~~~g~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v 332 (633)
+.|.|.+.|.|.|.+.|++++..+.. .........+.|.|.++..+|.|.|+|.|.|..|..+.++.|.|
T Consensus 1 v~l~C~~~g~P~p~v~W~k~~~~~~~-----~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V 70 (71)
T cd05731 1 LLLECIAEGLPTPEISWIKIGGELPA-----DRTKFENFNKTLKIDNVSEEDDGEYRCTASNSLGSARHTISVTV 70 (71)
T ss_pred CEEEEEeeEecCCeEEEEECCeECCC-----CceeEecCCCEEEECCCCHHHCEEEEEEEEeCCceEEEEEEEEE
Confidence 47999999999999999999876531 11112234568999999999999999999999999998888776
No 129
>cd05764 Ig_2 Subgroup of the immunoglobulin (Ig) superfamily. Ig_2: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=99.26 E-value=3.9e-11 Score=90.34 Aligned_cols=73 Identities=30% Similarity=0.509 Sum_probs=59.8
Q ss_pred CceEEEEEEEeeecCCeeEEEE-CCEEEEeccCCccceEEEccCceEEEcCCCCCCCeEEEEEEEeCCceeEEEEEEEE
Q psy15127 255 PRVNRLSCFAEGSPLPSVFWTQ-EGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQV 332 (633)
Q Consensus 255 g~~~~l~C~~~g~p~~~v~W~~-~g~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v 332 (633)
|+.+.|.|.+.|.|.|.+.|++ ++..+. ...+.....+++|.|..+..+|.|.|+|.|.|..|..+.++.|.|
T Consensus 1 G~~~~l~C~~~g~P~p~v~W~~~~~~~~~-----~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~v 74 (74)
T cd05764 1 GQRATLRCKARGDPEPAIHWISPDGKLIS-----NSSRTLVYDNGTLDILITTVKDTGSFTCIASNAAGEATATVELHI 74 (74)
T ss_pred CCeEEEEEEccCcCCCEEEEEeCCCEEec-----CCCeEEEecCCEEEEEECChhhCEEEEEEEECCCCeEEEEEEEEC
Confidence 5789999999999999999997 455442 113344456779999999999999999999999999988877764
No 130
>cd05858 Ig3_FGFR-2 Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor 2 (FGFR2). Ig3_FGFR-2-like; domain similar to the third immunoglobulin (Ig)-like domain of human fibroblast growth factor receptor 2 (FGFR2). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs. FGFR2 is required for male sex determination.
Probab=99.26 E-value=2.3e-11 Score=95.34 Aligned_cols=72 Identities=39% Similarity=0.582 Sum_probs=57.3
Q ss_pred CCeEEEEEEEeccCCCeEEEEeC----CccCCC-CC--eEEcc----------cceEEEccCCCCCCeEEEEEEEeCCce
Q psy15127 86 GSVVEFVCRVGGDPLPTILWRRD----DGKMPT-GR--AKILD----------DRSLQIENVGPQDEGLYICDVENLVGS 148 (633)
Q Consensus 86 G~~~~L~C~~~~~p~p~i~W~~~----~~~i~~-~~--~~~~~----------~~~L~i~~v~~~d~G~Y~C~~~n~~g~ 148 (633)
|++++|.|.+.|.|.|.|+|+|+ +..+.. +. ..... .+.|.|.+++.+|+|.|+|.|.|..|.
T Consensus 1 G~~v~L~C~~~g~P~P~i~W~k~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~ 80 (90)
T cd05858 1 GSTVEFVCKVYSDAQPHIQWLKHVEKNGSKYGPDGLPYVTVLKTAGVNTTDKEMEVLYLRNVTFEDAGEYTCLAGNSIGI 80 (90)
T ss_pred CCeEEEEEEEecCCCCEEEEEEecccCCcEeCCCCCeeEEEeccCCceecCCceeEEEEccCCHHHCEEEEEEEEeCCCc
Confidence 78999999999999999999984 333321 11 11111 147999999999999999999999999
Q ss_pred EEEEEEEEE
Q psy15127 149 ISLRASLTV 157 (633)
Q Consensus 149 ~s~~~~l~V 157 (633)
....+.|.|
T Consensus 81 ~~~~a~L~V 89 (90)
T cd05858 81 SHHSAWLTV 89 (90)
T ss_pred ccceEEEEE
Confidence 988888887
No 131
>cd05740 Ig_CEACAM_D4 Fourth immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM). Ig_CEACAM_D4: immunoglobulin (Ig)-like domain 4 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the
Probab=99.26 E-value=5e-11 Score=93.06 Aligned_cols=78 Identities=23% Similarity=0.405 Sum_probs=62.2
Q ss_pred eeEEecCCceEEEEEEEeeecCCeeEEEECCEEEEeccCCccceEEEc-cCceEEEcCCCCCCCeEEEEEEEeCCcee-E
Q psy15127 248 SLLIWNHPRVNRLSCFAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVT-QEGTLRIQGVQKEDAGFFVCSALSVAGST-T 325 (633)
Q Consensus 248 ~~~~~~~g~~~~l~C~~~g~p~~~v~W~~~g~~~~~~~~~~~~~~~~~-~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~-~ 325 (633)
....+.+|++++|.|.+.|. .|.+.|++++..+.. .++... .++.|.|.++..+|.|.|+|.|.|..|.. +
T Consensus 11 ~~~~v~~g~~v~l~C~a~g~-~p~i~W~kng~~l~~------~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~S 83 (91)
T cd05740 11 GNQPPEDNQPVTLTCEAEGQ-ATYIWWVNNGSLLVP------PRLQLSNDNRTLTFNNVTRSDTGHYQCEASNEVSNMTS 83 (91)
T ss_pred CccccccCCcEEEEEEeCCC-CCEEEEEECCEECCC------CCEEEeCCCCEEEECcCChhhCEEEEEEEEcCCCCEEe
Confidence 34467789999999999999 999999999987631 223333 34689999999999999999999999975 4
Q ss_pred EEEEEEE
Q psy15127 326 VRAFLQV 332 (633)
Q Consensus 326 ~~~~l~v 332 (633)
..+.|.|
T Consensus 84 ~~~~L~V 90 (91)
T cd05740 84 DPYILNV 90 (91)
T ss_pred eeEEEEe
Confidence 4555655
No 132
>PF07679 I-set: Immunoglobulin I-set domain; InterPro: IPR013098 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents I-set domains, which are found in several cell adhesion molecules, including vascular (VCAM), intercellular (ICAM), neural (NCAM) and mucosal addressin (MADCAM) cell adhesion molecules, as well as junction adhesion molecules (JAM). I-set domains are also present in several other diverse protein families, including several tyrosine-protein kinase receptors, the hemolymph protein hemolin, the muscle proteins titin, telokin, and twitchin, the neuronal adhesion molecule axonin-1 [], and the signalling molecule semaphorin 4D that is involved in axonal guidance, immune function and angiogenesis [].; PDB: 3MTR_A 2EDK_A 3DMK_B 1KOA_A 3NCM_A 2NCM_A 2V9Q_A 2CR3_A 3QQN_A 3QR2_A ....
Probab=99.26 E-value=1.1e-10 Score=91.99 Aligned_cols=83 Identities=27% Similarity=0.434 Sum_probs=68.2
Q ss_pred eeEEecCCceEEEEEEEeeecCCeeEEEECCEEEEeccCCccceEEEccCceEEEcCCCCCCCeEEEEEEEeCCceeEEE
Q psy15127 248 SLLIWNHPRVNRLSCFAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVR 327 (633)
Q Consensus 248 ~~~~~~~g~~~~l~C~~~g~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~ 327 (633)
..+.+..|+.+.|.|.+.|.|.+.+.|+++|..+.. .............+|.|.++..+|.|.|+|.|.|..|..+..
T Consensus 8 ~~~~v~~G~~~~l~c~~~~~p~~~v~W~~~~~~l~~--~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~n~~g~~~~~ 85 (90)
T PF07679_consen 8 KDVTVKEGESVTLECEVSGNPPPTVTWYKNGRPLTS--SQRYQIESDGGSSSLTIKNVTREDAGTYTCVASNSSGEATAS 85 (90)
T ss_dssp SEEEEETTSEEEEEEEEEESSSSEEEEEETTEEEES--SSSEEEEEETTEEEEEESSESGGGSEEEEEEEEETTEEEEEE
T ss_pred CCEEEeCCCEEEEEEEEEeCCCCcccccccccceee--eeeeeeecccceeEEccCCCChhhCEEEEEEEEECCCEEEEE
Confidence 556778899999999999999999999999998863 112222222345589999999999999999999999999999
Q ss_pred EEEEE
Q psy15127 328 AFLQV 332 (633)
Q Consensus 328 ~~l~v 332 (633)
+.|.|
T Consensus 86 ~~l~V 90 (90)
T PF07679_consen 86 VNLTV 90 (90)
T ss_dssp EEEEE
T ss_pred EEEEC
Confidence 88875
No 133
>cd05743 Ig_Perlecan_D2_like Immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2. Ig_Perlecan_D2_like: the immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2. Perlecan consists of five domains. Domain I has three putative heparan sulfate attachment sites; domain II has four LDL receptor-like repeats, and one Ig-like repeat; domain III resembles the short arm of laminin chains; domain IV has multiple Ig-like repeats (21 repeats in human perlecan); and domain V resembles the globular G domain of the laminin A chain and internal repeats of EGF. Perlecan may participate in a variety of biological functions including cell binding, LDL-metabolism, basement membrane assembly and selective permeability, calcium binding, and growth- and neurite-promoting activities.
Probab=99.26 E-value=4.3e-11 Score=90.92 Aligned_cols=73 Identities=23% Similarity=0.388 Sum_probs=58.3
Q ss_pred CceEEEEEEEeeecCCeeEEEECCEEEEeccCCccceEEE---ccCceEEEcCCCCCCCeEEEEEEEeCCceeEEEEEEE
Q psy15127 255 PRVNRLSCFAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHV---TQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQ 331 (633)
Q Consensus 255 g~~~~l~C~~~g~p~~~v~W~~~g~~~~~~~~~~~~~~~~---~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~ 331 (633)
|+++.|.|.+.|.|.|.+.|++++..+.. ..++.+ ...+.|.|.++..+|.|.|+|.|.|..|.....+.+.
T Consensus 1 G~~v~l~C~~~g~P~p~v~W~~~~~~~~~-----~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~~~ 75 (78)
T cd05743 1 GETVEFTCVATGVPTPIINWRLNWGHVPD-----SARVSITSEGGYGTLTIRDVKESDQGAYTCEAINTRGMVFGIPDGI 75 (78)
T ss_pred CCEEEEEEEEEEecCCEEEEEECCeECCC-----CCCEEEEECCCEEEEEECCCChHHCEEEEEEEEecCCEEEecccEE
Confidence 57899999999999999999999876531 122222 2235899999999999999999999999887666554
Q ss_pred E
Q psy15127 332 V 332 (633)
Q Consensus 332 v 332 (633)
+
T Consensus 76 ~ 76 (78)
T cd05743 76 L 76 (78)
T ss_pred E
Confidence 4
No 134
>cd05732 Ig5_NCAM-1_like Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM) and similar proteins. Ig5_NCAM-1 like: domain similar to the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM mole
Probab=99.26 E-value=4.7e-11 Score=95.26 Aligned_cols=83 Identities=25% Similarity=0.387 Sum_probs=63.8
Q ss_pred EEecCCceEEEEEEEeeecCCeeEEEECCEEEEeccCCccceEEEcc---CceEEEcCCCCCCCeEEEEEEEeCCceeEE
Q psy15127 250 LIWNHPRVNRLSCFAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQ---EGTLRIQGVQKEDAGFFVCSALSVAGSTTV 326 (633)
Q Consensus 250 ~~~~~g~~~~l~C~~~g~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~---~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~ 326 (633)
....+|+.+.|.|.+.|.|.|.+.|++++..+.........++.... .+.|.|.++..+|.|.|+|.|.|..|..+.
T Consensus 11 ~~~~~g~~v~l~C~~~g~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~ 90 (96)
T cd05732 11 QTAVELEQITLTCEAEGDPIPEITWRRATRNFSEGDKSLDGRIVVRGHARVSSLTLKDVQLTDAGRYDCEASNRIGGDQQ 90 (96)
T ss_pred eeEecCCcEEEEEEEeEcCCCcEEEEECCcccCCCCccccceEEEeCCccEEEEEECcCCcCcCEEeEEEEEeCCCCcEE
Confidence 45567899999999999999999999998654321111122333322 347999999999999999999999999988
Q ss_pred EEEEEE
Q psy15127 327 RAFLQV 332 (633)
Q Consensus 327 ~~~l~v 332 (633)
++.|.|
T Consensus 91 s~~l~v 96 (96)
T cd05732 91 SMYLEV 96 (96)
T ss_pred EEEEeC
Confidence 887764
No 135
>cd05734 Ig7_DSCAM Seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM). Ig7_DSCAM: the seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.
Probab=99.25 E-value=3e-11 Score=92.16 Aligned_cols=69 Identities=41% Similarity=0.705 Sum_probs=55.2
Q ss_pred EEEEEEEeccCCCeEEEEeCCccC---------CCCCeEEcccceEEEccCCCCCCeEEEEEEEeCCceE-EEEEEEEE
Q psy15127 89 VEFVCRVGGDPLPTILWRRDDGKM---------PTGRAKILDDRSLQIENVGPQDEGLYICDVENLVGSI-SLRASLTV 157 (633)
Q Consensus 89 ~~L~C~~~~~p~p~i~W~~~~~~i---------~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~n~~g~~-s~~~~l~V 157 (633)
++|.|.+.|.|.|.+.|+|++... ..++.....+++|.|.++..+|+|.|.|.|.|..|.. ++.+.|+|
T Consensus 1 v~l~C~~~G~P~P~v~W~~~~~~~~~~~~~~~~~~~r~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~s~~~~l~~ 79 (79)
T cd05734 1 VTLNCSAEGYPPPTIVWKHSKGRGHPQHTHTCCLAGRIQLLSNGSLLIKHVLEEDSGYYLCKVSNDVGADASKSMVLTV 79 (79)
T ss_pred CEeEeeCeEeCCCEEEEEECCCccccccccccccCCCEEEecCCeEEECcCCcccCEEEEEEEEeCCCCCCceEEEEeC
Confidence 579999999999999999975421 1234444567899999999999999999999999984 66666654
No 136
>cd05855 Ig_TrkB_d5 Fifth domain (immunoglobulin-like) of Trk receptor TrkB. TrkB_d5: the fifth domain of Trk receptor TrkB, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors, which mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. The Trks are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkB shares significant sequence homology and domain organization with TrkA, and TrkC. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. In some cell systems NT-3 can activate TrkA and TrkB receptors. TrKB transcripts are found throughout multiple structures of the central and peripheral nervous systems.
Probab=99.25 E-value=4.4e-11 Score=89.48 Aligned_cols=71 Identities=18% Similarity=0.318 Sum_probs=54.4
Q ss_pred EEEEEeeecCCeeEEEECCEEEEeccCCccceEEE----ccCceEEEcCCCCCCCeEEEEEEEeCCceeEEEEEEE
Q psy15127 260 LSCFAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHV----TQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQ 331 (633)
Q Consensus 260 l~C~~~g~p~~~v~W~~~g~~~~~~~~~~~~~~~~----~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~ 331 (633)
|.|.+.|+|.|+++|+|+|..+..... ....+.. ...+.|.|.++..+|+|.|+|.|.|..|..+.++.+.
T Consensus 3 i~~~v~G~P~Pti~W~kng~~l~~~~~-~~~~~~~~~~~~~~~~L~i~~~~~~D~G~YtC~A~N~~G~~~~~~~~~ 77 (79)
T cd05855 3 IPFTVKGNPKPTLQWFHEGAILNESEY-ICTKIHVINNTEYHGCLQLDNPTHLNNGIYTLVAKNEYGEDEKNVSAH 77 (79)
T ss_pred EEEEEeEeCCCceEEEECCEECCCCcc-eeeeeEeecccceEEEEEECCCCcccCEEEEEEEEcCCcccceEEEee
Confidence 689999999999999999998852110 0001111 1235799999999999999999999999988877654
No 137
>cd05754 Ig3_Perlecan_like Third immunoglobulin (Ig)-like domain found in Perlecan and similar proteins. Ig3_Perlecan_like: domain similar to the third immunoglobulin (Ig)-like domain found in Perlecan. Perlecan is a large multi-domain heparin sulfate proteoglycan, important in tissue development and organogenesis. Perlecan can be represented as 5 major portions; its fourth major portion (domain IV) is a tandem repeat of immunoglobulin-like domains (Ig2-Ig15), which can vary in size due to alternative splicing. Perlecan binds many cellular and extracellular ligands. Its domain IV region has many binding sites. Some of these have been mapped at the level of individual Ig-like domains, including a site restricted to the Ig5 domain for heparin/sulfatide, a site restricted to the Ig3 domain for nidogen-1 and nidogen-2, a site restricted to Ig4-5 for fibronectin, and sites restricted to Ig2 and to Ig13-15 for fibulin-2.
Probab=99.24 E-value=5.9e-11 Score=92.03 Aligned_cols=80 Identities=31% Similarity=0.589 Sum_probs=66.3
Q ss_pred eeeCCCceEEEcCCeEEEEEEEec-cCCCeEEEEeCCccCCCCCeEEcccceEEEccCCCCCCeEEEEEEEeCCceEEEE
Q psy15127 74 PISEPSDATVLSGSVVEFVCRVGG-DPLPTILWRRDDGKMPTGRAKILDDRSLQIENVGPQDEGLYICDVENLVGSISLR 152 (633)
Q Consensus 74 ~~~~~~~~~~~~G~~~~L~C~~~~-~p~p~i~W~~~~~~i~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~n~~g~~s~~ 152 (633)
....|....+.+|++++|.|.+.+ .|.+.+.|++++..++.. ....++.|.|.+++.+|+|.|+|.+.|..|..+..
T Consensus 4 ~~~~p~~~~v~~G~~v~L~C~~~~~~~~~~i~W~~~~~~~~~~--~~~~~~~L~I~~v~~~DsG~Y~C~a~n~~g~~~~~ 81 (85)
T cd05754 4 TVEEPRSQEVRPGADVSFICRAKSKSPAYTLVWTRVGGGLPSR--AMDFNGILTIRNVQLSDAGTYVCTGSNMLDTDEAT 81 (85)
T ss_pred EecCCCceEEcCCCCEEEEEEcCCCCCCcEEEEEECCCcCCCc--ccccCCEEEECCCCHHHCEEEEEEEeccCCeEeEE
Confidence 345677788999999999999964 688899999998776542 22345789999999999999999999999988877
Q ss_pred EEE
Q psy15127 153 ASL 155 (633)
Q Consensus 153 ~~l 155 (633)
+.|
T Consensus 82 ~~l 84 (85)
T cd05754 82 ATL 84 (85)
T ss_pred EEE
Confidence 765
No 138
>cd05891 Ig_M-protein_C C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2). Ig_M-protein_C: the C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2). M-protein is a structural protein localized to the M-band, a transverse structure in the center of the sarcomere, and is a candidate for M-band bridges. M-protein is modular consisting mainly of repetitive IG-like and fibronectin type III (FnIII) domains, and has a muscle-type specific expression pattern. M-protein is present in fast fibers.
Probab=99.24 E-value=1.2e-10 Score=91.42 Aligned_cols=83 Identities=23% Similarity=0.401 Sum_probs=65.6
Q ss_pred ceeEEecCCceEEEEEEEeeecCCeeEEEECCEEEEeccCCccceEEEccC--ceEEEcCCCCCCCeEEEEEEEeCCcee
Q psy15127 247 ASLLIWNHPRVNRLSCFAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQE--GTLRIQGVQKEDAGFFVCSALSVAGST 324 (633)
Q Consensus 247 ~~~~~~~~g~~~~l~C~~~g~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~~--~~l~i~~~~~~d~G~Y~C~a~n~~g~~ 324 (633)
+..+.+.+|+.+.|.|.+.|.|.|.+.|++++..+... .. ........ .+|.|.++..+|+|.|+|.|.|..|..
T Consensus 8 p~~v~v~eG~~v~L~C~v~g~P~p~i~W~k~~~~~~~~--~~-~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~ 84 (92)
T cd05891 8 PDVVTIMEGKTLNLTCTVFGNPDPEVIWFKNDQDIELS--EH-YSVKLEQGKYASLTIKGVTSEDSGKYSINVKNKYGGE 84 (92)
T ss_pred CCcEEEcCCCEEEEEEEEEEeCCCeEEEEECCEECCCC--CC-EEEEEcCCCEEEEEECCCChhhCEEEEEEEEeCCCce
Confidence 34567788999999999999999999999999876421 11 11222222 379999999999999999999999999
Q ss_pred EEEEEEEE
Q psy15127 325 TVRAFLQV 332 (633)
Q Consensus 325 ~~~~~l~v 332 (633)
..++.|.|
T Consensus 85 ~~~~~v~~ 92 (92)
T cd05891 85 TVDVTVSV 92 (92)
T ss_pred eeEEEEEC
Confidence 98887764
No 139
>cd05736 Ig2_Follistatin_like Second immunoglobulin (Ig)-like domain of a follistatin-like molecule encoded by the Mahya gene and similar proteins. Ig2_Follistatin_like: domain similar to the second immunoglobulin (Ig)-like domain found in a follistatin-like molecule encoded by the CNS-related Mahya gene. Mahya genes have been retained in certain Bilaterian branches during evolution. They are conserved in Hymenoptera and Deuterostomes, but are absent from other metazoan species such as fruit fly and nematode. Mahya proteins are secretory, with a follistatin-like domain (Kazal-type serine/threonine protease inhibitor domain and EF-hand calcium-binding domain), two Ig-like domains, and a novel C-terminal domain. Mahya may be involved in learning and memory and in processing of sensory information in Hymenoptera and vertebrates. Follistatin is a secreted, multidomain protein that binds activins with high affinity and antagonizes their signaling.
Probab=99.23 E-value=6.2e-11 Score=89.72 Aligned_cols=70 Identities=27% Similarity=0.499 Sum_probs=59.3
Q ss_pred EEEEEEEeccCCCeEEEEeCCccCCCC---CeEEccc-ceEEEccCCCCCCeEEEEEEEeCCceEEEEEEEEEE
Q psy15127 89 VEFVCRVGGDPLPTILWRRDDGKMPTG---RAKILDD-RSLQIENVGPQDEGLYICDVENLVGSISLRASLTVH 158 (633)
Q Consensus 89 ~~L~C~~~~~p~p~i~W~~~~~~i~~~---~~~~~~~-~~L~i~~v~~~d~G~Y~C~~~n~~g~~s~~~~l~V~ 158 (633)
+.|.|.+.|.|.|.+.|+|++..+..+ +.....+ ..|.|.+++.+|+|.|+|.+.|..|..+..+.|.|.
T Consensus 1 ~~L~C~v~g~P~p~v~W~k~~~~l~~~~~~~~~~~~~~~~l~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~V~ 74 (76)
T cd05736 1 ASLRCHAEGIPLPRLTWLKNGMDITPKLSKQLTLIANGSELHISNVRYEDTGAYTCIAKNEAGVDEDISSLFVE 74 (76)
T ss_pred CEeEeEeeecCCCEEEEEECCEECCCCCCccEEEeCCCCEEEECcCCcccCEEEEEEEEcCCCCcceEEEEEEE
Confidence 469999999999999999999887543 2333333 479999999999999999999999999999999886
No 140
>cd04974 Ig3_FGFR Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Ig3_FGFR: third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs.
Probab=99.23 E-value=5e-11 Score=93.31 Aligned_cols=77 Identities=22% Similarity=0.309 Sum_probs=57.4
Q ss_pred CceEEEEEEEeeecCCeeEEEECC----EEEEeccCCccceEE--------EccCceEEEcCCCCCCCeEEEEEEEeCCc
Q psy15127 255 PRVNRLSCFAEGSPLPSVFWTQEG----SQVLMFPGNAYGHLH--------VTQEGTLRIQGVQKEDAGFFVCSALSVAG 322 (633)
Q Consensus 255 g~~~~l~C~~~g~p~~~v~W~~~g----~~~~~~~~~~~~~~~--------~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g 322 (633)
|+.++|.|.+.|.|.|.|+|+|++ ..+. .......... ......|.|.+++.+|+|.|+|.|.|..|
T Consensus 1 G~~v~l~C~v~g~P~P~i~W~k~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G 79 (90)
T cd04974 1 GSDVEFHCKVYSDAQPHIQWLKHVEVNGSKYG-PDGLPYVTVLKVAGINTTDNESEVLYLRNVSFDDAGEYTCLAGNSIG 79 (90)
T ss_pred CCcEEEEEEEeCCCCCeEEEEEecccCCceeC-CCCCceEEEEEecCCcccccccceEEEeccccccCcEEEEEeecccC
Confidence 578999999999999999999964 2221 0100100110 11234799999999999999999999999
Q ss_pred eeEEEEEEEE
Q psy15127 323 STTVRAFLQV 332 (633)
Q Consensus 323 ~~~~~~~l~v 332 (633)
....++.|.|
T Consensus 80 ~~~~sa~L~V 89 (90)
T cd04974 80 PSHHSAWLTV 89 (90)
T ss_pred cccCCEEEEe
Confidence 9999998887
No 141
>cd05866 Ig1_NCAM-2 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2. Ig1_NCAM-2: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2 (OCAM/mamFas II, RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.
Probab=99.22 E-value=1.4e-10 Score=90.34 Aligned_cols=79 Identities=28% Similarity=0.481 Sum_probs=60.5
Q ss_pred eeEEecCCceEEEEEEEeeecCCeeEEEEC-CEEEEeccCCccceEEEccCc---eEEEcCCCCCCCeEEEEEEEeCCce
Q psy15127 248 SLLIWNHPRVNRLSCFAEGSPLPSVFWTQE-GSQVLMFPGNAYGHLHVTQEG---TLRIQGVQKEDAGFFVCSALSVAGS 323 (633)
Q Consensus 248 ~~~~~~~g~~~~l~C~~~g~p~~~v~W~~~-g~~~~~~~~~~~~~~~~~~~~---~l~i~~~~~~d~G~Y~C~a~n~~g~ 323 (633)
....+..|+.+.|.|.+.|.|. .+.|+++ +..+. . ..++....++ .|.|.++..+|+|.|+|.|.|..|.
T Consensus 8 ~~~~v~~G~~v~l~C~~~G~P~-~v~W~k~~g~~~~--~---~~r~~~~~~g~~~~L~I~~v~~~D~G~Y~C~A~N~~G~ 81 (92)
T cd05866 8 SKVELSVGESKFFTCTAIGEPE-SIDWYNPQGEKIV--S---SQRVVVQKEGVRSRLTIYNANIEDAGIYRCQATDAKGQ 81 (92)
T ss_pred cceEEcCCCeEEEEEEEEEeCC-eEEEEeCCCeEec--C---CCCEEEEeCCCeeEEEEecCChHHCEEEEEEEEcCCCc
Confidence 3455778999999999999998 8999985 55543 1 1344443333 8999999999999999999999998
Q ss_pred e-EEEEEEEE
Q psy15127 324 T-TVRAFLQV 332 (633)
Q Consensus 324 ~-~~~~~l~v 332 (633)
. ..++.|.+
T Consensus 82 ~~~~~i~l~~ 91 (92)
T cd05866 82 TQEATVVLEI 91 (92)
T ss_pred EEEEEEEEEE
Confidence 6 55555543
No 142
>cd04971 Ig_TrKABC_d5 Fifth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC. TrkABC_d5: the fifth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrkB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor foun
Probab=99.22 E-value=8.3e-11 Score=89.35 Aligned_cols=71 Identities=15% Similarity=0.255 Sum_probs=54.5
Q ss_pred EEEEEeeecCCeeEEEECCEEEEeccCCccceEEE------ccCceEEEcCCCCCCCeEEEEEEEeCCceeEEEEEEE
Q psy15127 260 LSCFAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHV------TQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQ 331 (633)
Q Consensus 260 l~C~~~g~p~~~v~W~~~g~~~~~~~~~~~~~~~~------~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~ 331 (633)
|.|.+.|+|.|.++|+|+|..+..... ....... ...+.|.|.++..+|+|.|+|.|.|..|..+.++.+.
T Consensus 3 i~~~v~G~P~P~v~W~k~g~~i~~~~~-~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~YtC~A~N~~G~~~~~~~~~ 79 (81)
T cd04971 3 IPFTVRGNPKPTLTWYHNGAVLNESDY-IRTEIHYEVTTPTEYHGCLQFDNPTHVNNGNYTLVASNEYGQDSKSISAH 79 (81)
T ss_pred EEEEeEeeCCCcEEEEECCEECcCCCc-eeEEEEeecccccccEEEEEECCCCcccCeEEEEEEEeCCCCeeeEEEee
Confidence 689999999999999999998752210 0001111 1234799999999999999999999999998887664
No 143
>cd05856 Ig2_FGFRL1-like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1). Ig2_FGFRL1-like: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1). FGFRL1 is comprised of a signal peptide, three extracellular Ig-like modules, a transmembrane segment, and a short intracellular domain. FGFRL1 is expressed preferentially in skeletal tissues. Similar to FGF receptors, the expressed protein interacts specifically with heparin and with FGF2. FGFRL1 does not have a protein tyrosine kinase domain at its C terminus; neither does its cytoplasmic domain appear to interact with a signaling partner. It has been suggested that FGFRL1 may not have any direct signaling function, but instead acts as a decoy receptor trapping FGFs and preventing them from binding other receptors.
Probab=99.22 E-value=6.1e-11 Score=91.57 Aligned_cols=79 Identities=22% Similarity=0.370 Sum_probs=62.1
Q ss_pred EEecCCceEEEEEEEeeecCCeeEEEECCEEEEeccCCccceEEEccCceEEEcCCCCCCCeEEEEEEEeCCceeEEEEE
Q psy15127 250 LIWNHPRVNRLSCFAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRAF 329 (633)
Q Consensus 250 ~~~~~g~~~~l~C~~~g~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~ 329 (633)
+....|+.+.|.|.+.|.|.|.+.|++++..+.... ..........|.|.++..+|+|.|+|.|.|..|..+.++.
T Consensus 4 ~~~~~G~~v~L~C~~~g~p~p~i~W~k~~~~~~~~~----~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~~ 79 (82)
T cd05856 4 IARPVGSSVRLKCVASGNPRPDITWLKDNKPLTPTE----IGESRKKKWTLSLKNLKPEDSGKYTCHVSNRAGEINATYK 79 (82)
T ss_pred eeccCCCeEEEEEEeeEeCCCcEEEEECCcCCcCCc----cceecCceEEEEEccCChhhCEEEEEEEEcCCccEEEEEE
Confidence 345568999999999999999999999998663211 1111223458999999999999999999999999888777
Q ss_pred EEE
Q psy15127 330 LQV 332 (633)
Q Consensus 330 l~v 332 (633)
|.|
T Consensus 80 v~v 82 (82)
T cd05856 80 VDV 82 (82)
T ss_pred EeC
Confidence 653
No 144
>cd05742 Ig1_VEGFR_like First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor (R) and similar proteins. Ig1_VEGFR_like: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R) related proteins. The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF-A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF
Probab=99.22 E-value=7.2e-11 Score=91.25 Aligned_cols=72 Identities=18% Similarity=0.278 Sum_probs=58.0
Q ss_pred CCeEEEEEEEecc--CCCeEEEEeCCccCCCCCe----EE-----cccceEEEccCCCCCCeEEEEEEEeCCceEEEEEE
Q psy15127 86 GSVVEFVCRVGGD--PLPTILWRRDDGKMPTGRA----KI-----LDDRSLQIENVGPQDEGLYICDVENLVGSISLRAS 154 (633)
Q Consensus 86 G~~~~L~C~~~~~--p~p~i~W~~~~~~i~~~~~----~~-----~~~~~L~i~~v~~~d~G~Y~C~~~n~~g~~s~~~~ 154 (633)
|+.+.|.|.+.+. |.+.++|++++..+..... .. ...+.|+|.+++.+|+|.|+|.|.|..+..++.+.
T Consensus 1 Ge~~~L~C~~~g~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~v~~~DsG~Y~C~a~n~~~~~~~s~~ 80 (84)
T cd05742 1 GETLVLNCTVLTELNEGVDFQWTYPGKKRGRGKSMVTRQSLSEATELSSTLTIPNATLKDSGTYTCAASSGTMDQKESTK 80 (84)
T ss_pred CCeEEEEEEEEeCCCccEEEEEecCCcccCCceEeecccccccceEEEEEEEECCCChhhCEEEEEEEccCCCceEEEEE
Confidence 7899999999998 7889999998875532211 11 12358999999999999999999999999888888
Q ss_pred EEE
Q psy15127 155 LTV 157 (633)
Q Consensus 155 l~V 157 (633)
|.|
T Consensus 81 v~v 83 (84)
T cd05742 81 VNI 83 (84)
T ss_pred EEE
Confidence 776
No 145
>cd05773 Ig8_hNephrin_like Eighth immunoglobulin-like domain of nephrin. Ig8_hNephrin_like: domain similar to the eighth immunoglobulin-like domain in human nephrin. Nephrin is an integral component of the slit diaphragm, and is a central component of the glomerular ultrafilter. Nephrin plays a structural role, and has a role in signaling. Nephrin is a transmembrane protein having a short intracellular portion, and an extracellular portion comprised of eight Ig-like domains, and one fibronectin type III-like domain. The extracellular portions of nephrin, from neighboring foot processes of separate podocyte cells, may interact with each other, and in association with other components of the slit diaphragm, form a porous molecular sieve within the slit pore. The intracellular portion of nephrin is associated with linker proteins, which connect nephrin to the actin cytoskeleton. The intracellular portion is tyrosine phosphorylated, and mediates signaling from the slit diaphragm into the p
Probab=99.22 E-value=1.4e-10 Score=94.05 Aligned_cols=81 Identities=21% Similarity=0.303 Sum_probs=62.4
Q ss_pred CCceEEEEEEEeeecCCeeEEEECCEEEEeccCCccceEEEc----cCceEEEcCCC-CCCCeEEEEEEEeCCceeEEEE
Q psy15127 254 HPRVNRLSCFAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVT----QEGTLRIQGVQ-KEDAGFFVCSALSVAGSTTVRA 328 (633)
Q Consensus 254 ~g~~~~l~C~~~g~p~~~v~W~~~g~~~~~~~~~~~~~~~~~----~~~~l~i~~~~-~~d~G~Y~C~a~n~~g~~~~~~ 328 (633)
.|..++|.|.+.|.|++.++|+++|..+..... ........ ..+.|.|.++. .+|.|.|+|.|.|..|.....+
T Consensus 22 ~g~~v~L~C~a~G~P~p~i~W~k~g~~l~~~~~-r~~~~~~~~~~~~~s~L~I~~v~~~~D~G~Y~C~A~N~~G~~~~~i 100 (109)
T cd05773 22 GSSDANLVCQAQGVPRVQFRWAKNGVPLDLGNP-RYEETTEHTGTVHTSILTIINVSAALDYALFTCTAHNSLGEDSLDI 100 (109)
T ss_pred CCCEEEEEEECcccCCCEEEEEECCEECCCCCC-eEEEEeeccCccceeEEEECcCCccCCCEEEEEEEEeCCccCcEEE
Confidence 567899999999999999999999987742111 11100111 13579999997 5899999999999999999999
Q ss_pred EEEEEec
Q psy15127 329 FLQVREF 335 (633)
Q Consensus 329 ~l~v~~~ 335 (633)
.|.+...
T Consensus 101 ~L~~~~~ 107 (109)
T cd05773 101 QLVSTSR 107 (109)
T ss_pred EEEecCC
Confidence 9988753
No 146
>cd05750 Ig_Pro_neuregulin Immunoglobulin (Ig)-like domain in neuregulins (NRGs). Ig_Pro_neuregulin: immunoglobulin (Ig)-like domain in neuregulins (NRGs). NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. There are four members of the neuregulin gene family (NRG1, -2, -3, and -4). The NRG-1 protein, binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. The other NRGs proteins bind one or the other or both of these ErbBs. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates processes such as target cell differentiation, and Schwann cell surv
Probab=99.22 E-value=4.1e-11 Score=90.65 Aligned_cols=66 Identities=26% Similarity=0.469 Sum_probs=53.9
Q ss_pred EEEEEEEec-cCCCeEEEEeCCccCCCCCeE----E---cccceEEEccCCCCCCeEEEEEEEeCCceEEEEEE
Q psy15127 89 VEFVCRVGG-DPLPTILWRRDDGKMPTGRAK----I---LDDRSLQIENVGPQDEGLYICDVENLVGSISLRAS 154 (633)
Q Consensus 89 ~~L~C~~~~-~p~p~i~W~~~~~~i~~~~~~----~---~~~~~L~i~~v~~~d~G~Y~C~~~n~~g~~s~~~~ 154 (633)
+.|.|.+.| .|.|.++|+|++..+...... . .....|.|.+++.+|+|.|+|.|.|..|..+..+.
T Consensus 1 ~~l~C~~~g~~P~p~~~W~k~g~~l~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~ 74 (75)
T cd05750 1 LVLKCEATSEYPSLRFKWFKDGKELNRKNKPRNIKIRNKKKNSELQINKAKLADSGEYTCVVENILGNDTVTAN 74 (75)
T ss_pred CEEEEEccCCCCCceEEEEcCCeeccccCCcceEEEEecCceEEEEEccCCcccCeEEEEEEEEcCCceeEEEe
Confidence 469999999 899999999999988643211 1 12368999999999999999999999998776654
No 147
>cd05882 Ig1_Necl-1 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). Ig1_Necl-1: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-1, Necl-1 (also known as celll adhesion molecule 3 (CADM3), SynCAM2, IGSF4). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the format
Probab=99.22 E-value=9.5e-11 Score=91.86 Aligned_cols=79 Identities=25% Similarity=0.455 Sum_probs=59.2
Q ss_pred CCceEEEcCCeEEEEEEEeccCCCeEEEEeCCccC---------CCCCeEEc----ccceEEEccCCCCCCeEEEEEEEe
Q psy15127 78 PSDATVLSGSVVEFVCRVGGDPLPTILWRRDDGKM---------PTGRAKIL----DDRSLQIENVGPQDEGLYICDVEN 144 (633)
Q Consensus 78 ~~~~~~~~G~~~~L~C~~~~~p~p~i~W~~~~~~i---------~~~~~~~~----~~~~L~i~~v~~~d~G~Y~C~~~n 144 (633)
..++.+.+|+++.|.|.+.+.|.+.|.|++++..+ ...++... .+..|.|.+++.+|+|.|+|.+..
T Consensus 4 ~~~~tv~~G~tv~L~C~v~g~~~~~v~W~k~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~nV~~~D~G~YtC~~~t 83 (95)
T cd05882 4 TQDETVAVGGTVTLKCGVKEHDNSSLQWSNTAQQTLYFGEKRALRDNRIQLVKSTPTELIISISNVQLSDEGEYTCSIFT 83 (95)
T ss_pred cccEEEecCCcEEEEEEEeCCCCCeEEEeccCccEEEeCCeEEEeCCeEEEEeCCCceEEEEECCCCcccCEEEEEEEEe
Confidence 35678999999999999999999999999987643 12333322 135899999999999999999986
Q ss_pred CCceEEEEEEEEE
Q psy15127 145 LVGSISLRASLTV 157 (633)
Q Consensus 145 ~~g~~s~~~~l~V 157 (633)
.. ..++.+.|+|
T Consensus 84 ~~-~~~~~~~~~v 95 (95)
T cd05882 84 MP-VRTAKATVTV 95 (95)
T ss_pred ec-cccEEEEEEC
Confidence 32 3444555543
No 148
>cd05757 Ig2_IL1R_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins. Ig2_IL1R_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three IG-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta. This group also contains ILIR-like 1 (IL1
Probab=99.21 E-value=6.4e-11 Score=92.20 Aligned_cols=77 Identities=22% Similarity=0.377 Sum_probs=62.0
Q ss_pred ceEEEcCCeEEEEEEEec-----cCCCeEEEEeCCccCCCCCeEEcccceEEEccCCCCCCeEEEEEEEeCCceEEEEEE
Q psy15127 80 DATVLSGSVVEFVCRVGG-----DPLPTILWRRDDGKMPTGRAKILDDRSLQIENVGPQDEGLYICDVENLVGSISLRAS 154 (633)
Q Consensus 80 ~~~~~~G~~~~L~C~~~~-----~p~p~i~W~~~~~~i~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~n~~g~~s~~~~ 154 (633)
...+.+|+.+.|.|...+ +|.|.+.|+|++.++...+.....++.|.|.+++.+|+|.|+|.+.|..+.....+.
T Consensus 4 ~~~~~~g~~~~l~Cp~~~~~~~~~~~p~i~Wyk~~~~i~~~~~~~~~~~~L~I~~v~~~DsG~YtC~~~n~~~~~~~~~t 83 (92)
T cd05757 4 KQILFSTKGGKIVCPDLDDFKNENTLPPVQWYKDCKLLEGDRKRFVKGSKLLIQNVTEEDAGNYTCKLTFTHNGKQYNVT 83 (92)
T ss_pred eEEEeeccCCEEECCChHHccCCCCCCcEEEeECCEECCCCccEEecCCEEEEeeCChhhCEEEEEEEEecCCCEEEEEE
Confidence 356889999999998753 257799999999999876555557789999999999999999999998877544444
Q ss_pred EE
Q psy15127 155 LT 156 (633)
Q Consensus 155 l~ 156 (633)
..
T Consensus 84 ~t 85 (92)
T cd05757 84 RT 85 (92)
T ss_pred EE
Confidence 33
No 149
>cd04979 Ig_Semaphorin_C Immunoglobulin (Ig)-like domain of semaphorin. Ig_Semaphorin_C; Immunoglobulin (Ig)-like domain in semaphorins. Semaphorins are transmembrane protein that have important roles in a variety of tissues. Functionally, semaphorins were initially characterized for their importance in the development of the nervous system and in axonal guidance. Later they have been found to be important for the formation and functioning of the cardiovascular, endocrine, gastrointestinal, hepatic, immune, musculoskeletal, renal, reproductive, and respiratory systems. Semaphorins function through binding to their receptors and transmembrane semaphorins also serves as receptors themselves. Although molecular mechanism of semaphorins is poorly understood, the Ig-like domains may involve in ligand binding or dimerization.
Probab=99.21 E-value=1.1e-10 Score=91.40 Aligned_cols=82 Identities=24% Similarity=0.399 Sum_probs=63.9
Q ss_pred CCCceEEEcCCeEEEEEEEeccCCCeEEEEeCCccCCCC----CeEEcccceEEEccCCCCCCeEEEEEEEeCC-ceEEE
Q psy15127 77 EPSDATVLSGSVVEFVCRVGGDPLPTILWRRDDGKMPTG----RAKILDDRSLQIENVGPQDEGLYICDVENLV-GSISL 151 (633)
Q Consensus 77 ~~~~~~~~~G~~~~L~C~~~~~p~p~i~W~~~~~~i~~~----~~~~~~~~~L~i~~v~~~d~G~Y~C~~~n~~-g~~s~ 151 (633)
.|..+.+.+|+.+.|.|.+.+ |.+.+.|+|++..+... .+.......|.|.+++.+|+|.|.|.|.+.. +....
T Consensus 2 ~~~~~~v~~g~~v~L~C~~~~-p~~~i~W~k~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~~~~~~~~~~ 80 (89)
T cd04979 2 EEKVVTVVEGNSVFLECSPKS-NLASVVWLFQGGPLQRKEEPEERLLVTEDGLLIRSVSPADAGVYTCQSVEHGFKQTLA 80 (89)
T ss_pred cceEEEEECCCcEEEEEeCCC-CCceEEEEECCcccccccCcCceEEEcCCCEEEccCCHHHCEEEEEEEecCccceeEe
Confidence 355678899999999999976 78899999999876543 2333344679999999999999999998654 44677
Q ss_pred EEEEEEEe
Q psy15127 152 RASLTVHL 159 (633)
Q Consensus 152 ~~~l~V~~ 159 (633)
...|.|.+
T Consensus 81 ~~~l~V~~ 88 (89)
T cd04979 81 TYSLNVLE 88 (89)
T ss_pred EEEEEEec
Confidence 77777753
No 150
>cd05771 IgC_Tapasin_R Tapasin-R immunoglobulin-like domain. IgC_Tapasin_R: Immunoglobulin-like domain on Tapasin-R. Tapasin is a V-C1 (variable-constant) immunoglobulin superfamily molecule present in the endoplasmic reticulum (ER), where it links MHC class I molecules to the transporter associated with antigen processing (TAP). Tapasin-R is a tapasin-related protein that contains similar structural motifs to Tapasin, with some marked differences, especially in the V domain, transmembrane and cytoplasmic regions. The majority of Tapasin-R is located within the ER; however, there may be some expression of Tapasin-R at the cell surface. Tapasin-R lacks an obvious ER retention signal.
Probab=99.20 E-value=1.7e-10 Score=98.84 Aligned_cols=78 Identities=22% Similarity=0.253 Sum_probs=66.5
Q ss_pred eEEEccCCCCCCeEEEEEEEeCCceEEEEEEEEEEeeccccccCCCceEEecCCcEEEEEeCCCCCCC-CeEEEEECCEE
Q psy15127 124 SLQIENVGPQDEGLYICDVENLVGSISLRASLTVHLLRDDFRAEPKDTRVASGETALLECGPPKGQPE-PTLHWKKNGQF 202 (633)
Q Consensus 124 ~L~i~~v~~~d~G~Y~C~~~n~~g~~s~~~~l~V~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~p~-~~i~W~~~~~~ 202 (633)
+|+|.+++.+|+|.|.|.+.+..+..+..+.|.|..+ |.+...+.......|+.+.|.|.+...+|. +.|.|+++|..
T Consensus 2 sL~i~~v~~~D~G~Y~C~~~~~~~~~~~~~~l~v~~~-P~v~~~~~~~~~~~~~~~~L~C~a~g~~P~~~~i~W~~~g~~ 80 (139)
T cd05771 2 SLTLPGLTVHDEGTYICSVSTPPHQAQQIIQLSVSEP-PRVRLSLEKLVSMIEEPQTLICHIAGYYPLDVQVEWTREPPG 80 (139)
T ss_pred eEEECCCCHHHCEEEEEEEEccCcceeeEEEEEEecC-CceEEeCCCceeecCCcEEEEEEECCCCCCCeEEEEEECCCC
Confidence 6999999999999999999998888899999999987 777777766555589999999996555675 59999999864
No 151
>cd05858 Ig3_FGFR-2 Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor 2 (FGFR2). Ig3_FGFR-2-like; domain similar to the third immunoglobulin (Ig)-like domain of human fibroblast growth factor receptor 2 (FGFR2). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs. FGFR2 is required for male sex determination.
Probab=99.20 E-value=7.4e-11 Score=92.45 Aligned_cols=77 Identities=25% Similarity=0.361 Sum_probs=57.3
Q ss_pred CceEEEEEEEeeecCCeeEEEEC----CEEEEeccCCccceEE------E--ccCceEEEcCCCCCCCeEEEEEEEeCCc
Q psy15127 255 PRVNRLSCFAEGSPLPSVFWTQE----GSQVLMFPGNAYGHLH------V--TQEGTLRIQGVQKEDAGFFVCSALSVAG 322 (633)
Q Consensus 255 g~~~~l~C~~~g~p~~~v~W~~~----g~~~~~~~~~~~~~~~------~--~~~~~l~i~~~~~~d~G~Y~C~a~n~~g 322 (633)
|+.++|.|.+.|.|.|.+.|+++ |..+.. .......+. . ...+.|.|.+++.+|+|.|+|.|.|..|
T Consensus 1 G~~v~L~C~~~g~P~P~i~W~k~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G 79 (90)
T cd05858 1 GSTVEFVCKVYSDAQPHIQWLKHVEKNGSKYGP-DGLPYVTVLKTAGVNTTDKEMEVLYLRNVTFEDAGEYTCLAGNSIG 79 (90)
T ss_pred CCeEEEEEEEecCCCCEEEEEEecccCCcEeCC-CCCeeEEEeccCCceecCCceeEEEEccCCHHHCEEEEEEEEeCCC
Confidence 57899999999999999999984 333320 000000000 0 0124799999999999999999999999
Q ss_pred eeEEEEEEEE
Q psy15127 323 STTVRAFLQV 332 (633)
Q Consensus 323 ~~~~~~~l~v 332 (633)
....++.|.|
T Consensus 80 ~~~~~a~L~V 89 (90)
T cd05858 80 ISHHSAWLTV 89 (90)
T ss_pred cccceEEEEE
Confidence 9999998877
No 152
>cd05848 Ig1_Contactin-5 First Ig domain of contactin-5. Ig1_Contactin-5: First Ig domain of the neural cell adhesion molecule contactin-5. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains, anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. In rats, a lack of contactin-5 (NB-2) results in an impairment of the neuronal activity in the auditory system. Contactin-5 is expressed specifically in the postnatal nervous system, peaking at about 3 weeks postnatal. Contactin-5 is highly expressed in the adult human brain in the occipital lobe and in the amygdala; lower levels of expression have been detected in the corpus callosum, caudate nucleus, and spinal cord.
Probab=99.20 E-value=1.9e-10 Score=90.66 Aligned_cols=69 Identities=25% Similarity=0.420 Sum_probs=55.0
Q ss_pred CCceEEEEEEEeeecCCeeEEEECCEEEEeccCCccceEEEccCceEEEcCCC-CCCCeEEEEEEEeCCceeEE
Q psy15127 254 HPRVNRLSCFAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQ-KEDAGFFVCSALSVAGSTTV 326 (633)
Q Consensus 254 ~g~~~~l~C~~~g~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~~~~l~i~~~~-~~d~G~Y~C~a~n~~g~~~~ 326 (633)
.|+.++|.|.+.|.|.|.++|+|+|..+... ...++. ..++.|.|.++. .+|.|.|+|.|.|..|....
T Consensus 18 ~g~~v~l~C~~~G~P~P~i~W~k~g~~l~~~---~~~~~~-~~~g~L~i~~~~~~~D~G~Y~C~A~N~~G~~~S 87 (94)
T cd05848 18 DEKKVILNCEARGNPVPTYRWLRNGTEIDTE---SDYRYS-LIDGNLIISNPSEVKDSGRYQCLATNSIGSILS 87 (94)
T ss_pred CCCEEEEEEEeeecCCCEEEEEECCeECccC---CCceEE-eeCCeEEEccCCccCcCEEEEEEEEcCCCeEEe
Confidence 4789999999999999999999999877421 112232 245689999885 69999999999999998743
No 153
>PF00041 fn3: Fibronectin type III domain; InterPro: IPR003961 Fibronectins are multi-domain glycoproteins found in a soluble form in plasma, and in an insoluble form in loose connective tissue and basement membranes []. They contain multiple copies of 3 repeat regions (types I, II and III), which bind to a variety of substances including heparin, collagen, DNA, actin, fibrin and fibronectin receptors on cell surfaces. The wide variety of these substances means that fibronectins are involved in a number of important functions: e.g., wound healing; cell adhesion; blood coagulation; cell differentiation and migration; maintenance of the cellular cytoskeleton; and tumour metastasis []. The role of fibronectin in cell differentiation is demonstrated by the marked reduction in the expression of its gene when neoplastic transformation occurs. Cell attachment has been found to be mediated by the binding of the tetrapeptide RGDS to integrins on the cell surface [], although related sequences can also display cell adhesion activity. Plasma fibronectin occurs as a dimer of 2 different subunits, linked together by 2 disulphide bonds near the C terminus. The difference in the 2 chains occurs in the type III repeat region and is caused by alternative splicing of the mRNA from one gene []. The observation that, in a given protein, an individual repeat of one of the 3 types (e.g., the first FnIII repeat) shows much less similarity to its subsequent tandem repeats within that protein than to its equivalent repeat between fibronectins from other species, has suggested that the repeating structure of fibronectin arose at an early stage of evolution. It also seems to suggest that the structure is subject to high selective pressure []. The fibronectin type III repeat region is an approximately 100 amino acid domain, different tandem repeats of which contain binding sites for DNA, heparin and the cell surface []. The superfamily of sequences believed to contain FnIII repeats represents 45 different families, the majority of which are involved in cell surface binding in some manner, or are receptor protein tyrosine kinases, or cytokine receptors.; GO: 0005515 protein binding; PDB: 1UEM_A 1TDQ_A 1X5I_A 2IC2_B 2IBG_C 2IBB_A 3R8Q_A 2FNB_A 1FNH_A 2EDB_A ....
Probab=99.19 E-value=8.6e-11 Score=91.50 Aligned_cols=79 Identities=27% Similarity=0.377 Sum_probs=65.7
Q ss_pred eeeecccceEEEEEEEecCCCcccccchhhhhcceeEEEEEEcCCCcccceeeeeeccceeEeecCCccceEEeeccccc
Q psy15127 534 ELIPTASTAVRITWEVSWGSVPQHLLDEARARLGTKVVNLRELIPTASTAVRITWEKYNMATVMNAATTTSYTVTHLRKF 613 (633)
Q Consensus 534 ~~~~~~~~si~v~W~~p~~~~p~~~~~~~~~i~~y~~i~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~i~~L~~~ 613 (633)
++..++.+++.|+|++| ...++.+++| .|+|+...... .|. .+......+.++|.+|+|+
T Consensus 7 ~v~~~~~~sv~v~W~~~--------~~~~~~~~~y-~v~~~~~~~~~------~~~-----~~~~~~~~~~~~i~~L~p~ 66 (85)
T PF00041_consen 7 SVSNISPTSVTVSWKPP--------SSGNGPITGY-RVEYRSVNSTS------DWQ-----EVTVPGNETSYTITGLQPG 66 (85)
T ss_dssp EEEEECSSEEEEEEEES--------SSTSSSESEE-EEEEEETTSSS------EEE-----EEEEETTSSEEEEESCCTT
T ss_pred EEEECCCCEEEEEEECC--------CCCCCCeeEE-EEEEEecccce------eee-----eeeeeeeeeeeeeccCCCC
Confidence 78888999999999965 2678999999 99998887654 122 3334455679999999999
Q ss_pred eeEEEEEeccccccccccC
Q psy15127 614 TKYEFFLVPFFKTVEGARL 632 (633)
Q Consensus 614 t~Y~~~v~a~n~~g~g~~s 632 (633)
+.|.|+|+|.|..|+|++|
T Consensus 67 t~Y~~~v~a~~~~g~g~~S 85 (85)
T PF00041_consen 67 TTYEFRVRAVNSDGEGPPS 85 (85)
T ss_dssp SEEEEEEEEEETTEEEEEE
T ss_pred CEEEEEEEEEeCCcCcCCC
Confidence 9999999999999999987
No 154
>cd05724 Ig2_Robo Second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Ig2_Robo: domain similar to the second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antago
Probab=99.19 E-value=1.5e-10 Score=90.20 Aligned_cols=80 Identities=25% Similarity=0.446 Sum_probs=63.6
Q ss_pred eeEEecCCceEEEEEEE-eeecCCeeEEEECCEEEEeccCCccceEEEccCceEEEcCCCCCCCeEEEEEEEeCCcee-E
Q psy15127 248 SLLIWNHPRVNRLSCFA-EGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGST-T 325 (633)
Q Consensus 248 ~~~~~~~g~~~~l~C~~-~g~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~-~ 325 (633)
....+.+|+++.|.|.+ .|.|.|.+.|+++|..+... ..+.....++.|.|.++..+|+|.|+|.|.|..|.. +
T Consensus 4 ~~~~~~~G~~v~l~C~~~~g~p~p~i~W~k~g~~~~~~----~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~s 79 (86)
T cd05724 4 SDTQVAVGEMAVLECSPPRGHPEPTVSWRKDGQPLNLD----NERVRIVDDGNLLIAEARKSDEGTYKCVATNMVGERES 79 (86)
T ss_pred ccEEEeCCCCEEEEEECCCCCCCCEEEEEECCEECCCC----CCCEEEccCCEEEEeECCcccCEEEEEEEEeccCceee
Confidence 34566789999999998 79999999999999876421 234445557799999999999999999999999986 4
Q ss_pred EEEEEE
Q psy15127 326 VRAFLQ 331 (633)
Q Consensus 326 ~~~~l~ 331 (633)
..+.|.
T Consensus 80 ~~~~l~ 85 (86)
T cd05724 80 AAARLS 85 (86)
T ss_pred eeEEEE
Confidence 444443
No 155
>cd05736 Ig2_Follistatin_like Second immunoglobulin (Ig)-like domain of a follistatin-like molecule encoded by the Mahya gene and similar proteins. Ig2_Follistatin_like: domain similar to the second immunoglobulin (Ig)-like domain found in a follistatin-like molecule encoded by the CNS-related Mahya gene. Mahya genes have been retained in certain Bilaterian branches during evolution. They are conserved in Hymenoptera and Deuterostomes, but are absent from other metazoan species such as fruit fly and nematode. Mahya proteins are secretory, with a follistatin-like domain (Kazal-type serine/threonine protease inhibitor domain and EF-hand calcium-binding domain), two Ig-like domains, and a novel C-terminal domain. Mahya may be involved in learning and memory and in processing of sensory information in Hymenoptera and vertebrates. Follistatin is a secreted, multidomain protein that binds activins with high affinity and antagonizes their signaling.
Probab=99.19 E-value=1.9e-10 Score=87.08 Aligned_cols=73 Identities=32% Similarity=0.503 Sum_probs=59.6
Q ss_pred EEEEEEEeeecCCeeEEEECCEEEEeccCCccceEEEccC-ceEEEcCCCCCCCeEEEEEEEeCCceeEEEEEEEEE
Q psy15127 258 NRLSCFAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQE-GTLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVR 333 (633)
Q Consensus 258 ~~l~C~~~g~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~~-~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~ 333 (633)
+.|.|.+.|.|+|.+.|+|++..+... ...++....+ ..|.|.++..+|.|.|+|.|.|..|..+..+.|.|.
T Consensus 1 ~~L~C~v~g~P~p~v~W~k~~~~l~~~---~~~~~~~~~~~~~l~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~V~ 74 (76)
T cd05736 1 ASLRCHAEGIPLPRLTWLKNGMDITPK---LSKQLTLIANGSELHISNVRYEDTGAYTCIAKNEAGVDEDISSLFVE 74 (76)
T ss_pred CEeEeEeeecCCCEEEEEECCEECCCC---CCccEEEeCCCCEEEECcCCcccCEEEEEEEEcCCCCcceEEEEEEE
Confidence 369999999999999999999876421 1123333333 479999999999999999999999999999999886
No 156
>cd04973 Ig1_FGFR First immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Ig1_FGFR: The first immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for all FGFs.
Probab=99.19 E-value=1.2e-10 Score=88.54 Aligned_cols=76 Identities=21% Similarity=0.358 Sum_probs=61.0
Q ss_pred EEecCCceEEEEEEEeeecCCeeEEEECCEEEEeccCCccceEEEccCceEEEcCCCCCCCeEEEEEEEeCCceeEEEEE
Q psy15127 250 LIWNHPRVNRLSCFAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRAF 329 (633)
Q Consensus 250 ~~~~~g~~~~l~C~~~g~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~ 329 (633)
..+.+|+.+.|.|.+.+. .+.+.|+|+|..+.. ..+..+ ....|.|.++..+|+|.|+|.|.|..|.....+.
T Consensus 4 ~~~~~G~~v~l~C~~~~~-~~~v~W~k~g~~l~~-----~~~~~~-~~~~L~I~~~~~~DsG~Y~C~a~n~~g~~~~~~~ 76 (79)
T cd04973 4 YSAHPGDLLQLRCRLRDD-VQSINWTKDGVQLGE-----NNRTRI-TGEEVQIKDAVPRDSGLYACVTSSPSGSDTTYFS 76 (79)
T ss_pred EEecCCCCEEEEEEecCC-CceEEEeeCCcCCCC-----CceEEE-eCCEEEECCCChhhCEEEEEEEeCCCCcccEEEE
Confidence 456789999999999986 568999999987741 123333 3458999999999999999999999998877776
Q ss_pred EEE
Q psy15127 330 LQV 332 (633)
Q Consensus 330 l~v 332 (633)
|.|
T Consensus 77 v~V 79 (79)
T cd04973 77 VNV 79 (79)
T ss_pred EeC
Confidence 653
No 157
>cd05875 Ig6_hNeurofascin_like Sixth immunoglobulin (Ig)-like domain of human neurofascin (NF). Ig6_hNeurofascin_like: the sixth immunoglobulin (Ig)-like domain of human neurofascin (NF). NF belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and a cytoplasmic domain. NF has many alternatively spliced isoforms having different temporal expression patterns during development. NF participates in axon subcellular targeting and synapse formation, however little is known of the functions of the different isoforms.
Probab=99.19 E-value=1.2e-10 Score=87.74 Aligned_cols=66 Identities=27% Similarity=0.499 Sum_probs=51.0
Q ss_pred EEEEEEEeccCCCeEEEEeCCccCC---CCCeEE-cccceEEEccCC----CCCCeEEEEEEEeCCceE-EEEEE
Q psy15127 89 VEFVCRVGGDPLPTILWRRDDGKMP---TGRAKI-LDDRSLQIENVG----PQDEGLYICDVENLVGSI-SLRAS 154 (633)
Q Consensus 89 ~~L~C~~~~~p~p~i~W~~~~~~i~---~~~~~~-~~~~~L~i~~v~----~~d~G~Y~C~~~n~~g~~-s~~~~ 154 (633)
+.|.|.+.|.|.|.|+|+|++..+. ..+... ..+++|.|.++. .+|+|.|+|.|.|..|.. +..+.
T Consensus 1 ~~l~C~~~G~P~P~v~W~k~g~~~~~~~~~~~~~~~~~~~L~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~s~~~~ 75 (77)
T cd05875 1 IIIECEAKGNPVPTFQWTRNGKFFNVAKDPRVSMRRRSGTLVIDFSGGGRPEDYEGEYQCFARNNLGTALSNKIL 75 (77)
T ss_pred CEEEEeccccCCCEEEEEECCEEccCcCCCcEEEeCCCceEEEeccCCCCCCCCCEEEEEEEEeccceEEEEEEE
Confidence 4799999999999999999998763 233333 346799998875 247999999999999984 44443
No 158
>cd05733 Ig6_L1-CAM_like Sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins. Ig6_L1-CAM_like: domain similar to the sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains NrCAM [Ng(neuronglia)CAM-related cell adhesion molecule], which is primarily expressed in the nervous system, and human neurofascin.
Probab=99.19 E-value=8.6e-11 Score=88.87 Aligned_cols=67 Identities=30% Similarity=0.560 Sum_probs=52.3
Q ss_pred EEEEEEEeccCCCeEEEEeCCccCCCC---CeEE-cccceEEEccCCC----CCCeEEEEEEEeCCceE-EEEEEE
Q psy15127 89 VEFVCRVGGDPLPTILWRRDDGKMPTG---RAKI-LDDRSLQIENVGP----QDEGLYICDVENLVGSI-SLRASL 155 (633)
Q Consensus 89 ~~L~C~~~~~p~p~i~W~~~~~~i~~~---~~~~-~~~~~L~i~~v~~----~d~G~Y~C~~~n~~g~~-s~~~~l 155 (633)
+.|.|.+.|.|.|.|+|+|++..+... +... ..++.|.|.++.. +|+|.|+|.|.|..|.. +..+.|
T Consensus 1 i~l~C~~~G~P~P~v~W~k~g~~l~~~~~~~~~~~~~~g~L~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~s~~~~l 76 (77)
T cd05733 1 IVIKCEAKGNPPPTFSWTRNGTHFDPEKDPRVTMKPDSGTLVIDNMNGGRAEDYEGEYQCYASNELGTAISNEIHL 76 (77)
T ss_pred CEEEeeCcccCCCeEEEEECCeECCCCCCCCEEEeCCCCEEEEeccCCCCCcCCCEEEEEEEEcCCCcEEccccEE
Confidence 479999999999999999999987432 2222 2468999999864 78999999999999974 444443
No 159
>cd07702 Ig2_VEGFR-1 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1). Ig2_VEGFR-1: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1). VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-1 binds VEGF-A strongly; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-1 may play an inhibitory rolet in the function of VEGFR-2 by binding VEGF-A and interfering with its interaction with VEGFR-2. VEGFR-1 has a signaling role in mediating monocyte chemotaxis and may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.
Probab=99.18 E-value=1.4e-10 Score=85.22 Aligned_cols=70 Identities=23% Similarity=0.295 Sum_probs=54.2
Q ss_pred EEEEEEEeeecCCeeEEEECCEEEEeccCCccceEEEccCceEEEcCCCCCCCeEEEEEEEeCCceeEEEEEEEE
Q psy15127 258 NRLSCFAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQV 332 (633)
Q Consensus 258 ~~l~C~~~g~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v 332 (633)
+.|.|.+.|.|+|++.|+|+|.++.. ...+... ...+|.|.++..+|+|.|+|.|.|..........+.+
T Consensus 1 ~~l~c~v~g~P~P~v~W~kdg~~l~~----~~~~~~~-~~~~L~I~~v~~~D~G~YtC~a~~~~~~~~~~~~i~~ 70 (72)
T cd07702 1 YRLTPKVKAFPAPEVIWLKDGLPAAE----KCSRYHV-DGYSLVIKDVTEEDAGIYTILLGIKQYNLFKNLTITL 70 (72)
T ss_pred CeEEeeEEEcCCCeEEEEECCEECCC----CCcEEEe-CCCEEEECcCCHHHCEEEEEEEEccccceEeeEEEEE
Confidence 36999999999999999999987642 1123333 3458999999999999999999998766655555443
No 160
>cd05861 Ig1_PDGFR-alphabeta Frst immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b). Ig1_PDGFR-alphabeta: The first immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b). PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFRalpha binds to all three PDGFs, whereas the PDGFRbeta binds only to PDGF-B. PDGFRs alpha and beta have similar organization: an extracellular component with five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFRalpha and PDGFRbeta are essential for normal development.
Probab=99.18 E-value=2.6e-10 Score=87.72 Aligned_cols=73 Identities=19% Similarity=0.366 Sum_probs=56.7
Q ss_pred CCeEEEEEEEeccCCCeEEEEeCCccCCCCC----eEEc----ccceEEEccCCCCCCeEEEEEEEeCCc--eEEEEEEE
Q psy15127 86 GSVVEFVCRVGGDPLPTILWRRDDGKMPTGR----AKIL----DDRSLQIENVGPQDEGLYICDVENLVG--SISLRASL 155 (633)
Q Consensus 86 G~~~~L~C~~~~~p~p~i~W~~~~~~i~~~~----~~~~----~~~~L~i~~v~~~d~G~Y~C~~~n~~g--~~s~~~~l 155 (633)
|++++|.|.+.+.|.+.+.|++.++...... .... ....|.|.+++.+|+|.|.|.|.|..+ ..++.+.|
T Consensus 1 Ge~~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~~~~~DsG~Y~C~a~n~~~~~~~~~sv~i 80 (84)
T cd05861 1 GETITVNCIVQGNEVVDFSWTYPGKDIGKGIPEVEEVKVPATTLRSTLTFPHATVEDSGTYECAAHESTQDQKAFKKVNI 80 (84)
T ss_pred CCcEEEEEEEECCCccEEEEEECCccCCCCceEEEEEecCCcEEEEEEEECCCCcCCCEEEEEEEEECccCcceeEEEEE
Confidence 7899999999999999999998776432111 1111 135899999999999999999998776 46777777
Q ss_pred EEE
Q psy15127 156 TVH 158 (633)
Q Consensus 156 ~V~ 158 (633)
+|.
T Consensus 81 ~V~ 83 (84)
T cd05861 81 TVH 83 (84)
T ss_pred EEe
Confidence 775
No 161
>cd05874 Ig6_NrCAM Sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule). Ig6_NrCAM: sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and an intracellular domain. NrCAM is primarily expressed in the nervous system.
Probab=99.18 E-value=1.5e-10 Score=87.33 Aligned_cols=67 Identities=22% Similarity=0.475 Sum_probs=51.4
Q ss_pred EEEEEEEeccCCCeEEEEeCCccCCC---CCeEE-cccceEEEccCCC----CCCeEEEEEEEeCCceE-EEEEEE
Q psy15127 89 VEFVCRVGGDPLPTILWRRDDGKMPT---GRAKI-LDDRSLQIENVGP----QDEGLYICDVENLVGSI-SLRASL 155 (633)
Q Consensus 89 ~~L~C~~~~~p~p~i~W~~~~~~i~~---~~~~~-~~~~~L~i~~v~~----~d~G~Y~C~~~n~~g~~-s~~~~l 155 (633)
+.|.|.+.|.|.|.|+|+|++.++.. .+... ..+++|.|..+.. .|+|.|+|.|.|..|.. +..+.|
T Consensus 1 ~~l~C~a~G~P~P~i~W~k~g~~l~~~~~~~~~~~~~~g~l~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~s~~~~~ 76 (77)
T cd05874 1 IVIQCEAKGKPPPSFSWTRNGTHFDIDKDPKVTMKPNTGTLVINIMNGEKAEAYEGVYQCTARNERGAAVSNNIVI 76 (77)
T ss_pred CEEEeeCcccCCCeEEEEECCeECCCcCCCCEEEeCCCceEEEeccccCCCCCCCEEEEEEEEcCCCeEEeeEEEE
Confidence 47999999999999999999998732 22222 2467899988875 37899999999999984 334443
No 162
>cd05722 Ig1_Neogenin First immunoglobulin (Ig)-like domain in neogenin and similar proteins. Ig1_Neogenin: first immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.
Probab=99.17 E-value=2e-10 Score=91.13 Aligned_cols=79 Identities=29% Similarity=0.472 Sum_probs=61.1
Q ss_pred EEecCCceEEEEEEEeeecCCeeEEEECCEEEEeccCCccceEEEccCceEEEcCC-----CCCCCeEEEEEEEeC-Cce
Q psy15127 250 LIWNHPRVNRLSCFAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGV-----QKEDAGFFVCSALSV-AGS 323 (633)
Q Consensus 250 ~~~~~g~~~~l~C~~~g~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~~~~l~i~~~-----~~~d~G~Y~C~a~n~-~g~ 323 (633)
....+|+++.|.|.+.|.|.|.+.|+|+|..+... ...+.....++.|.|.++ ...|.|.|+|.|.|. .|.
T Consensus 9 ~~~~~g~~v~l~C~v~g~P~p~i~W~k~g~~l~~~---~~~~~~~~~~~~l~i~~v~~~~~~~~D~G~Y~C~a~N~~~G~ 85 (95)
T cd05722 9 IVAVRGGPVVLNCSAEGEPPPKIEWKKDGVLLNLV---SDERRQQLPNGSLLITSVVHSKHNKPDEGFYQCVAQNDSLGS 85 (95)
T ss_pred eEEcCCCCEEEeeecccCCCCEEEEEECCeECccc---cCcceEEccCCeEEEeeeeccCCCCCcCEEEEEEEECCccCc
Confidence 45567899999999999999999999999877422 112334455667888776 588999999999999 998
Q ss_pred e-EEEEEEE
Q psy15127 324 T-TVRAFLQ 331 (633)
Q Consensus 324 ~-~~~~~l~ 331 (633)
. +..+.|.
T Consensus 86 ~~s~~~~l~ 94 (95)
T cd05722 86 IVSRTARLT 94 (95)
T ss_pred EEEeeeEEe
Confidence 6 5555554
No 163
>cd05734 Ig7_DSCAM Seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM). Ig7_DSCAM: the seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.
Probab=99.17 E-value=1.5e-10 Score=88.30 Aligned_cols=74 Identities=26% Similarity=0.518 Sum_probs=56.0
Q ss_pred EEEEEEEeeecCCeeEEEECCEEEEec---cCCccceEEEccCceEEEcCCCCCCCeEEEEEEEeCCcee-EEEEEEE
Q psy15127 258 NRLSCFAEGSPLPSVFWTQEGSQVLMF---PGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGST-TVRAFLQ 331 (633)
Q Consensus 258 ~~l~C~~~g~p~~~v~W~~~g~~~~~~---~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~-~~~~~l~ 331 (633)
++|.|.+.|+|.|.+.|++++...... ......+.....+++|.|.++..+|.|.|.|.|.|..|.. +..+.|.
T Consensus 1 v~l~C~~~G~P~P~v~W~~~~~~~~~~~~~~~~~~~r~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~s~~~~l~ 78 (79)
T cd05734 1 VTLNCSAEGYPPPTIVWKHSKGRGHPQHTHTCCLAGRIQLLSNGSLLIKHVLEEDSGYYLCKVSNDVGADASKSMVLT 78 (79)
T ss_pred CEeEeeCeEeCCCEEEEEECCCccccccccccccCCCEEEecCCeEEECcCCcccCEEEEEEEEeCCCCCCceEEEEe
Confidence 479999999999999999975422100 0012345555667899999999999999999999999986 5555554
No 164
>cd07693 Ig1_Robo First immunoglobulin (Ig)-like domain in Robo (roundabout) receptors and similar proteins. Ig1_Robo: domain similar to the first immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit res
Probab=99.16 E-value=2.4e-10 Score=92.07 Aligned_cols=85 Identities=29% Similarity=0.462 Sum_probs=60.2
Q ss_pred eeEEecCCceEEEEEEEeeecCCeeEEEECCEEEEeccCCccceEEEccCceEE---E--cCCCCCCCeEEEEEEEeCCc
Q psy15127 248 SLLIWNHPRVNRLSCFAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLR---I--QGVQKEDAGFFVCSALSVAG 322 (633)
Q Consensus 248 ~~~~~~~g~~~~l~C~~~g~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~~~~l~---i--~~~~~~d~G~Y~C~a~n~~g 322 (633)
....+.+|+.+.|.|.+.|.|.|.+.|+|+|..+.........+.....++.+. + ..+..+|+|.|+|.|.|..|
T Consensus 9 ~~~~v~~G~~~~l~C~~~g~P~p~i~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~D~G~Y~C~a~N~~G 88 (100)
T cd07693 9 SDLIVSKGDPATLNCKAEGRPTPTIQWLKNGQPLETDKDDPRSHRIVLPSGSLFFLRVVHGRKGRSDEGVYVCVAHNSLG 88 (100)
T ss_pred ceeEEcCCCeEEEEeeCCcCCCCEEEEEECCEECccccCCCCcceEEecCCcEEEEEeeccCCCcCcCEEEEEEEEcccc
Confidence 346677899999999999999999999999987753111111222222333332 2 22368999999999999999
Q ss_pred e-eEEEEEEEE
Q psy15127 323 S-TTVRAFLQV 332 (633)
Q Consensus 323 ~-~~~~~~l~v 332 (633)
. .+..+.|.|
T Consensus 89 ~~~s~~~~l~v 99 (100)
T cd07693 89 EAVSRNASLEV 99 (100)
T ss_pred ceecceEEEEe
Confidence 8 567777665
No 165
>cd05756 Ig1_IL1R_like First immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins. Ig1_IL1R_like: domain similar to the first immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta.
Probab=99.15 E-value=1.6e-10 Score=90.72 Aligned_cols=82 Identities=17% Similarity=0.177 Sum_probs=64.4
Q ss_pred eEEecCCceEEEEEEEee-----ecCCeeEEEECCEEEEeccCCccceEEEccCceEEEcCCCCCCCeEEEEEEEeCCce
Q psy15127 249 LLIWNHPRVNRLSCFAEG-----SPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGS 323 (633)
Q Consensus 249 ~~~~~~g~~~~l~C~~~g-----~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~ 323 (633)
...+.+|+.+.|.|.+.| .|.+.+.|+|++..+.... ....++.. .++.|.|.++..+|+|.|+|.+.|..|.
T Consensus 8 ~~~v~~G~~~~L~C~~~g~~~~~~p~~~v~Wyk~~~~~~~~~-~~~~r~~~-~~~~L~I~~~~~~DsG~Y~C~~~N~~g~ 85 (94)
T cd05756 8 KSYVLEGEPVVIKCPLFYSYIAQSPGLNLTWYKSDGKTPIPT-EERSRMHQ-QKDLLWFLPAALEDSGLYTCVVRNSTYC 85 (94)
T ss_pred EEEEecCCCeEEECCCCCcccccCCCceEEEEEcCCCCcccc-cccceeee-cCCeEEEccCCcccCeEEEEEEcCCCcc
Confidence 445668999999999999 6889999999997643211 11233333 3568999999999999999999999999
Q ss_pred eEEEEEEEE
Q psy15127 324 TTVRAFLQV 332 (633)
Q Consensus 324 ~~~~~~l~v 332 (633)
.+..+.|.|
T Consensus 86 ~~~~~~L~v 94 (94)
T cd05756 86 MKVSISLTV 94 (94)
T ss_pred EEEEEEEEC
Confidence 998887764
No 166
>cd05850 Ig1_Contactin-2 First Ig domain of contactin-2. Ig1_Contactin-2: First Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c
Probab=99.15 E-value=4.1e-10 Score=88.81 Aligned_cols=72 Identities=28% Similarity=0.470 Sum_probs=55.8
Q ss_pred CceEEEEEEEeeecCCeeEEEECCEEEEeccCCccceEEEccCceEEEcCCC-CCCCeEEEEEEEeCCceeEE-EEEE
Q psy15127 255 PRVNRLSCFAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQ-KEDAGFFVCSALSVAGSTTV-RAFL 330 (633)
Q Consensus 255 g~~~~l~C~~~g~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~~~~l~i~~~~-~~d~G~Y~C~a~n~~g~~~~-~~~l 330 (633)
|++++|.|.+.|+|.|.++|+++|..+.... ..++.. .++.|.|.++. ..|.|.|+|.|.|..|.... .+.|
T Consensus 19 g~~v~l~C~a~g~P~p~i~W~~~g~~l~~~~---~~~~~~-~~g~L~I~~~~~~~D~G~Y~C~A~N~~G~~~s~~a~l 92 (94)
T cd05850 19 EEKVTLGCRARASPPATYRWKMNGTEIKFAP---ESRYTL-VAGNLVINNPQKARDAGSYQCLAINRCGTVVSREANL 92 (94)
T ss_pred CCeEEEEeEceeCCCCEEEEEECCEECccCC---CceEEE-ECCeEEEccCCccCcCEEEEEEEEcCcCcEEEEEEEE
Confidence 4689999999999999999999999874221 123333 35689998865 59999999999999998743 4443
No 167
>cd05753 Ig2_FcgammaR_like Second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins. Ig2_FcgammaR_like: domain similar to the second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.
Probab=99.15 E-value=1.2e-10 Score=89.27 Aligned_cols=78 Identities=21% Similarity=0.229 Sum_probs=60.2
Q ss_pred eCCCceEEEcCCeEEEEEEEe-ccCCCeEEEEeCCccCCCCCeEEcccceEEEccCCCCCCeEEEEEEEeCCce-EEEEE
Q psy15127 76 SEPSDATVLSGSVVEFVCRVG-GDPLPTILWRRDDGKMPTGRAKILDDRSLQIENVGPQDEGLYICDVENLVGS-ISLRA 153 (633)
Q Consensus 76 ~~~~~~~~~~G~~~~L~C~~~-~~p~p~i~W~~~~~~i~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~n~~g~-~s~~~ 153 (633)
.+++...+.+|+.++|.|.+. +.+.+.+.|+|+|..+... .....|.|.+++.+|+|.|+|.+.+..+. .|..+
T Consensus 4 l~~p~~~V~~G~~vtL~C~~~~~~~~~~~~w~k~g~~~~~~----~~~~~l~I~~~~~~dsG~Y~C~~~~~~~~~~s~~~ 79 (83)
T cd05753 4 LQVPSRVVFEGEPLVLRCHGWKNKPVYKVTYYRDGKAKKYS----HSNSNLSIPQATLSDSGSYHCSGIIGSYDYSSEPV 79 (83)
T ss_pred EECCcceecCCCCEEEEeeCCCCCcceEEEEEECCeEcccc----CCCceEEECccCHHHCEEEEEEEEeCCceecCCCE
Confidence 344455799999999999985 3556689999999866421 23468999999999999999999998876 45555
Q ss_pred EEEE
Q psy15127 154 SLTV 157 (633)
Q Consensus 154 ~l~V 157 (633)
.|+|
T Consensus 80 ~i~~ 83 (83)
T cd05753 80 SITV 83 (83)
T ss_pred EEEC
Confidence 5554
No 168
>cd05733 Ig6_L1-CAM_like Sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins. Ig6_L1-CAM_like: domain similar to the sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains NrCAM [Ng(neuronglia)CAM-related cell adhesion molecule], which is primarily expressed in the nervous system, and human neurofascin.
Probab=99.14 E-value=1.8e-10 Score=87.08 Aligned_cols=66 Identities=24% Similarity=0.432 Sum_probs=51.1
Q ss_pred EEEEEEEeeecCCeeEEEECCEEEEeccCCccceEEE-ccCceEEEcCCCC----CCCeEEEEEEEeCCceeEE
Q psy15127 258 NRLSCFAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHV-TQEGTLRIQGVQK----EDAGFFVCSALSVAGSTTV 326 (633)
Q Consensus 258 ~~l~C~~~g~p~~~v~W~~~g~~~~~~~~~~~~~~~~-~~~~~l~i~~~~~----~d~G~Y~C~a~n~~g~~~~ 326 (633)
++|.|.+.|+|.|+++|+|+|..+... ...++.. ..++.|.|..+.. +|+|.|+|.|.|..|....
T Consensus 1 i~l~C~~~G~P~P~v~W~k~g~~l~~~---~~~~~~~~~~~g~L~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~s 71 (77)
T cd05733 1 IVIKCEAKGNPPPTFSWTRNGTHFDPE---KDPRVTMKPDSGTLVIDNMNGGRAEDYEGEYQCYASNELGTAIS 71 (77)
T ss_pred CEEEeeCcccCCCeEEEEECCeECCCC---CCCCEEEeCCCCEEEEeccCCCCCcCCCEEEEEEEEcCCCcEEc
Confidence 479999999999999999999876321 1123333 3567899998754 7899999999999997643
No 169
>cd05875 Ig6_hNeurofascin_like Sixth immunoglobulin (Ig)-like domain of human neurofascin (NF). Ig6_hNeurofascin_like: the sixth immunoglobulin (Ig)-like domain of human neurofascin (NF). NF belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and a cytoplasmic domain. NF has many alternatively spliced isoforms having different temporal expression patterns during development. NF participates in axon subcellular targeting and synapse formation, however little is known of the functions of the different isoforms.
Probab=99.14 E-value=3.8e-10 Score=85.05 Aligned_cols=67 Identities=24% Similarity=0.409 Sum_probs=50.7
Q ss_pred EEEEEEEeeecCCeeEEEECCEEEEeccCCccceEEE-ccCceEEEcCCC----CCCCeEEEEEEEeCCceeEEE
Q psy15127 258 NRLSCFAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHV-TQEGTLRIQGVQ----KEDAGFFVCSALSVAGSTTVR 327 (633)
Q Consensus 258 ~~l~C~~~g~p~~~v~W~~~g~~~~~~~~~~~~~~~~-~~~~~l~i~~~~----~~d~G~Y~C~a~n~~g~~~~~ 327 (633)
+.|.|.+.|+|.|.++|+|+|..+... ...++.. ..+++|.|..+. .+|.|.|+|.|.|..|.....
T Consensus 1 ~~l~C~~~G~P~P~v~W~k~g~~~~~~---~~~~~~~~~~~~~L~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~s~ 72 (77)
T cd05875 1 IIIECEAKGNPVPTFQWTRNGKFFNVA---KDPRVSMRRRSGTLVIDFSGGGRPEDYEGEYQCFARNNLGTALSN 72 (77)
T ss_pred CEEEEeccccCCCEEEEEECCEEccCc---CCCcEEEeCCCceEEEeccCCCCCCCCCEEEEEEEEeccceEEEE
Confidence 469999999999999999999866322 1223333 456789998764 246899999999999976443
No 170
>cd07701 Ig1_Necl-3 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Ig1_Necl-3: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-3, Necl-3 (also known as cell adhesion molecule 2 (CADM2), SynCAM2, IGSF4D). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-3 accumulates in central and peripheral nervous system tissue, and has been shown to selectively interact with oligodendrocytes.
Probab=99.14 E-value=3.5e-10 Score=89.07 Aligned_cols=79 Identities=25% Similarity=0.497 Sum_probs=59.8
Q ss_pred CCceEEEcCCeEEEEEEEeccCCCeEEEEeCCc---------cCCCCCeEEc----ccceEEEccCCCCCCeEEEEEEEe
Q psy15127 78 PSDATVLSGSVVEFVCRVGGDPLPTILWRRDDG---------KMPTGRAKIL----DDRSLQIENVGPQDEGLYICDVEN 144 (633)
Q Consensus 78 ~~~~~~~~G~~~~L~C~~~~~p~p~i~W~~~~~---------~i~~~~~~~~----~~~~L~i~~v~~~d~G~Y~C~~~n 144 (633)
+.++.+.+|+++.|.|.+.+.|.+.+.|++.+. .+..+++... .+.+|.|.+++.+|+|.|+|.+.+
T Consensus 4 ~~~v~v~eG~~v~L~C~~~~~p~~~v~W~~~~~~~l~~~~~~~~~~~r~~~~~~~~~~~sL~I~~v~~~DsG~Y~C~~~t 83 (95)
T cd07701 4 TQNVTVVEGGTANLTCRVDQNDNTSLQWSNPAQQTLYFDDKKALRDNRIELVRASWHELSISISDVSLSDEGQYTCSLFT 83 (95)
T ss_pred cceEEEecCCcEEEEEEEecCCceEEEEeCCCCeEEEEcCcccccCCCEEEEECCCCcEEEEECcCCcccCEEEEEEeEe
Confidence 467889999999999999999999999986322 2233454432 235899999999999999999987
Q ss_pred CCceEEEEEEEEE
Q psy15127 145 LVGSISLRASLTV 157 (633)
Q Consensus 145 ~~g~~s~~~~l~V 157 (633)
..+ .+..+.|.|
T Consensus 84 ~~~-~~~~~~l~v 95 (95)
T cd07701 84 MPV-KTSKAYLTV 95 (95)
T ss_pred ecC-ccEEEEEEC
Confidence 533 356666654
No 171
>cd05758 Ig5_KIRREL3-like Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2) and similar proteins. Ig5_KIRREL3-like: domain similar to the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.
Probab=99.13 E-value=4.6e-10 Score=89.55 Aligned_cols=79 Identities=24% Similarity=0.325 Sum_probs=61.5
Q ss_pred eEEecCCceEEEEEEEeeecCC-eeEEEECCEEEEeccCCccceEEEccC-------ceEEEcCCCC-CCCeEEEEEEEe
Q psy15127 249 LLIWNHPRVNRLSCFAEGSPLP-SVFWTQEGSQVLMFPGNAYGHLHVTQE-------GTLRIQGVQK-EDAGFFVCSALS 319 (633)
Q Consensus 249 ~~~~~~g~~~~l~C~~~g~p~~-~v~W~~~g~~~~~~~~~~~~~~~~~~~-------~~l~i~~~~~-~d~G~Y~C~a~n 319 (633)
......|+.+.|.|.+.|.|.| .+.|++++..+.... ..++.+... +.|.|.++.. +|.|.|+|.|.|
T Consensus 10 ~~~~~~G~~v~L~C~~~g~P~P~~v~W~~~~~~i~~~~---~~r~~i~~~~~~~~~~s~L~I~~v~~~d~~G~Y~C~A~N 86 (98)
T cd05758 10 TQYAILGDKGRVECFIFSTPPPDRIVWTWKENELESGS---SGRYTVETDPSPGGVLSTLTISNTQESDFQTSYNCTAWN 86 (98)
T ss_pred cEEEeCCCcEEEEEEEcccCCCCEeEEEECCEEccCCC---CCCEEEEEecCCCceEEEEEECCccccccceeEEEEEEc
Confidence 3446789999999999999999 699999998774221 123333222 3799999999 458999999999
Q ss_pred CCceeEEEEEE
Q psy15127 320 VAGSTTVRAFL 330 (633)
Q Consensus 320 ~~g~~~~~~~l 330 (633)
..|.....+.|
T Consensus 87 ~~G~~~~~~~L 97 (98)
T cd05758 87 SFGSGTAIISL 97 (98)
T ss_pred CCCcccEEEEe
Confidence 99998887765
No 172
>cd05849 Ig1_Contactin-1 First Ig domain of contactin-1. Ig1_Contactin-1: First Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may, through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.
Probab=99.12 E-value=5.8e-10 Score=87.46 Aligned_cols=71 Identities=23% Similarity=0.415 Sum_probs=55.3
Q ss_pred CceEEEEEEEeeecCCeeEEEECCEEEEeccCCccceEEEccCceEEEcCCC-CCCCeEEEEEEEeCCceeEE-EEEE
Q psy15127 255 PRVNRLSCFAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQ-KEDAGFFVCSALSVAGSTTV-RAFL 330 (633)
Q Consensus 255 g~~~~l~C~~~g~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~~~~l~i~~~~-~~d~G~Y~C~a~n~~g~~~~-~~~l 330 (633)
++.+.|.|.+.|+|.|.++|++++..+.. ...+... .++.|.|.++. .+|+|.|+|.|.|..|.... .+.|
T Consensus 19 ~~~v~l~C~a~G~P~P~i~W~k~~~~i~~----~~~~~~~-~~g~L~I~~~~~~~D~G~Y~C~A~N~~G~~~s~~a~l 91 (93)
T cd05849 19 EGKVSVNCRARANPFPIYKWRKNNLDIDL----TNDRYSM-VGGNLVINNPDKYKDAGRYVCIVSNIYGKVRSREATL 91 (93)
T ss_pred CCeEEEeCcCccCCCCEEEEEECCEEccC----CCCeEEE-ECCEEEECcCCcCCCCEEEEEEEEeCcceEEEccEEE
Confidence 35799999999999999999999987632 1123333 46789999885 68999999999999998743 4443
No 173
>cd05729 Ig2_FGFR_like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor and similar proteins. Ig2_FGFR_like: domain similar to the second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three Ig-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin
Probab=99.11 E-value=6.6e-10 Score=86.44 Aligned_cols=77 Identities=35% Similarity=0.555 Sum_probs=62.8
Q ss_pred eEEEcCCeEEEEEEEeccCCCeEEEEeCCccCCCCC-eEE----cccceEEEccCCCCCCeEEEEEEEeCCceEEEEEEE
Q psy15127 81 ATVLSGSVVEFVCRVGGDPLPTILWRRDDGKMPTGR-AKI----LDDRSLQIENVGPQDEGLYICDVENLVGSISLRASL 155 (633)
Q Consensus 81 ~~~~~G~~~~L~C~~~~~p~p~i~W~~~~~~i~~~~-~~~----~~~~~L~i~~v~~~d~G~Y~C~~~n~~g~~s~~~~l 155 (633)
+.+.+|+.+.|.|.+.+.|.+.+.|++++..+.... ... .....|.|.++..+|+|.|.|.+.|..|..+..+.|
T Consensus 4 ~~~~~G~~~~l~C~~~~~p~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~n~~g~~~~~~~l 83 (85)
T cd05729 4 HAVPAGSTVRLKCPASGNPRPTITWLKDGKPFKKEHRIGGYKVRKKKWTLILESVVPSDSGKYTCIVENKYGSINHTYKV 83 (85)
T ss_pred eEecCCCcEEEEEEcCCCCCCeEEEEECCEECcccCceeEEEccCcEEEEEEeECCcccCEEEEEEEEECCceEEEEEEE
Confidence 456789999999999999999999999998875332 111 112479999999999999999999999998888877
Q ss_pred EE
Q psy15127 156 TV 157 (633)
Q Consensus 156 ~V 157 (633)
.|
T Consensus 84 ~v 85 (85)
T cd05729 84 DV 85 (85)
T ss_pred eC
Confidence 64
No 174
>cd05749 Ig2_Tyro3_like Second immunoglobulin (Ig)-like domain of Axl/Tyro3 receptor tyrosine kinases (RTKs). Ig2_Tyro3_like: the second immunoglobulin (Ig)-like domain in the Axl/Tyro3 family of receptor tyrosine kinases (RTKs). This family includes Axl (also known as Ark, Ufo, and Tyro7), Tyro3 (also known as Sky, Rse, Brt, Dtk, and Tif), and Mer (also known as Nyk, c-Eyk, and Tyro12). Axl/Tyro3 family receptors have an extracellular portion with two Ig-like domains followed by two fibronectin-types III (FNIII) domains, a membrane-spanning single helix, and a cytoplasmic tyrosine kinase domain. Axl, Tyro3 and Mer are widely expressed in adult tissues, though they show higher expression in the brain, in the lymphatic and vascular systems, and in the testis. Axl, Tyro3, and Mer bind the vitamin K dependent protein Gas6 with high affinity, and in doing so activate their tyrosine kinase activity. Axl/Gas6 signaling may play a part in cell adhesion processes, prevention of apoptosis, and c
Probab=99.11 E-value=5.4e-10 Score=84.65 Aligned_cols=69 Identities=28% Similarity=0.422 Sum_probs=54.7
Q ss_pred eeEEecCCceEEEEEEEeeecCC-eeEEEECCEEEEeccCCccceEEEccCceEEEcCCCCCCCeEEEEEEEeCCceeEE
Q psy15127 248 SLLIWNHPRVNRLSCFAEGSPLP-SVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTTV 326 (633)
Q Consensus 248 ~~~~~~~g~~~~l~C~~~g~p~~-~v~W~~~g~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~ 326 (633)
..+.+.+|+++.|.|.+.|.|.| +|+|+++|.++.. .. ....+.|.|..+ .|.|.|.|.|.|.+|....
T Consensus 6 ~~~~v~~G~~v~l~C~a~G~P~P~~I~W~k~g~~l~~-------~~-~~~~s~L~i~~~--~d~g~Y~C~A~N~~G~~~s 75 (81)
T cd05749 6 EDLSVTANTPFNLTCQAVGPPEPVEILWWQGGSPLGD-------PP-APSPSVLNVPGL--NETSKFSCEAHNAKGVTTS 75 (81)
T ss_pred CceEEcCCCCEEEEEEeeeecCCeEEEEEECCEECCC-------CC-CCCCCEEEEccc--cCCeEEEEEEEeccCcEEe
Confidence 34677889999999999999999 7999999997742 00 112357888877 4789999999999997643
No 175
>cd05874 Ig6_NrCAM Sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule). Ig6_NrCAM: sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and an intracellular domain. NrCAM is primarily expressed in the nervous system.
Probab=99.11 E-value=5.4e-10 Score=84.22 Aligned_cols=67 Identities=27% Similarity=0.465 Sum_probs=50.8
Q ss_pred EEEEEEEeeecCCeeEEEECCEEEEeccCCccceEEE-ccCceEEEcCCCCC----CCeEEEEEEEeCCceeEEE
Q psy15127 258 NRLSCFAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHV-TQEGTLRIQGVQKE----DAGFFVCSALSVAGSTTVR 327 (633)
Q Consensus 258 ~~l~C~~~g~p~~~v~W~~~g~~~~~~~~~~~~~~~~-~~~~~l~i~~~~~~----d~G~Y~C~a~n~~g~~~~~ 327 (633)
+.|.|.+.|+|.|+++|+|+|..+.... ..+... ..+++|.|..+... |.|.|+|.|.|..|.....
T Consensus 1 ~~l~C~a~G~P~P~i~W~k~g~~l~~~~---~~~~~~~~~~g~l~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~s~ 72 (77)
T cd05874 1 IVIQCEAKGKPPPSFSWTRNGTHFDIDK---DPKVTMKPNTGTLVINIMNGEKAEAYEGVYQCTARNERGAAVSN 72 (77)
T ss_pred CEEEeeCcccCCCeEEEEECCeECCCcC---CCCEEEeCCCceEEEeccccCCCCCCCEEEEEEEEcCCCeEEee
Confidence 4799999999999999999998763211 122333 34678888877653 7899999999999986543
No 176
>cd05898 Ig5_KIRREL3 Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2). Ig5_KIRREL3: the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1). These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development. Neph1 and 2 may mediate axonal guidance and synapse formation in certain areas of the CNS. In the kidney, they participate in the formation of the slit diaphragm.
Probab=99.10 E-value=1.2e-09 Score=85.44 Aligned_cols=84 Identities=24% Similarity=0.361 Sum_probs=66.9
Q ss_pred CCeeeeCCCceEEEcCCeEEEEEEEeccCCC-eEEEEeCCccCCC---CCeEEcc-------cceEEEccCCCCC-CeEE
Q psy15127 71 KPFPISEPSDATVLSGSVVEFVCRVGGDPLP-TILWRRDDGKMPT---GRAKILD-------DRSLQIENVGPQD-EGLY 138 (633)
Q Consensus 71 ~p~~~~~~~~~~~~~G~~~~L~C~~~~~p~p-~i~W~~~~~~i~~---~~~~~~~-------~~~L~i~~v~~~d-~G~Y 138 (633)
||.| .......+.+|++++|.|.+.+.|.| .|.|.+++..+.. +++.+.. .+.|.|.++...| .|.|
T Consensus 2 pP~i-~~~~s~~~~~G~~~~L~C~~~s~P~P~~i~W~w~~~~i~~~~~~r~~I~~~~~~~g~~S~L~I~~~~~~d~~g~Y 80 (98)
T cd05898 2 PPII-SSEQVQYAVRGERGKVKCFIGSTPPPDRIAWAWKENVLESGTSERYTVERTSTGSGVLSTLTINNIMEADFQTHY 80 (98)
T ss_pred CCEE-ecCceEEEeCCCcEEEEEEEccCCCCcEEEEEEccccccCCCCCCEEEEEEccCCCcEEEEEECCCccccCCcEE
Confidence 4555 66678889999999999999888887 5899988877643 3444432 2579999998867 8999
Q ss_pred EEEEEeCCceEEEEEEE
Q psy15127 139 ICDVENLVGSISLRASL 155 (633)
Q Consensus 139 ~C~~~n~~g~~s~~~~l 155 (633)
.|.|.|.+|.....+.|
T Consensus 81 ~C~a~N~~G~d~~~i~L 97 (98)
T cd05898 81 NCTAWNSFGSGTAIIQL 97 (98)
T ss_pred EEEEEeCCccceEEEEe
Confidence 99999999998887766
No 177
>cd05895 Ig_Pro_neuregulin-1 Immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1. Ig_Pro_neuregulin-1: immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1. There are many NRG-1 isoforms which arise from the alternative splicing of mRNA. NRG-1 belongs to the neuregulin gene family, which is comprised of four genes. This group represents NRG-1. NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, and heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. The NRG-1 protein binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates process
Probab=99.09 E-value=3.1e-10 Score=85.83 Aligned_cols=66 Identities=24% Similarity=0.397 Sum_probs=51.7
Q ss_pred EEEEEEEec-cCCCeEEEEeCCccCCCC----C-eEEc---ccceEEEccCCCCCCeEEEEEEEeCCceEEEEEE
Q psy15127 89 VEFVCRVGG-DPLPTILWRRDDGKMPTG----R-AKIL---DDRSLQIENVGPQDEGLYICDVENLVGSISLRAS 154 (633)
Q Consensus 89 ~~L~C~~~~-~p~p~i~W~~~~~~i~~~----~-~~~~---~~~~L~i~~v~~~d~G~Y~C~~~n~~g~~s~~~~ 154 (633)
+.|.|.+.+ .|.+.++|+|+|..+... . .... ..+.|.|.+++.+|+|.|+|.|.|..|..+..+.
T Consensus 1 ~~L~C~a~~~~p~~~~~W~~~g~~i~~~~~~~~~~~~~~~~~~~~L~I~~~~~~DsG~Y~C~a~N~~g~~~~~~~ 75 (76)
T cd05895 1 LVLRCETVSEYPSLRFKWFKNGKEIGAKNKPDNKIKIRKKKKSSELQISKASLADNGEYKCMVSSKLGNDSVTAN 75 (76)
T ss_pred CEEEEecccCCCCCceEEEECCcccccCCCCCceEEEEeCCcEEEEEECcCCcccCEEEEEEEEeCCCceeEEEe
Confidence 479999864 677899999999888532 1 1111 2367999999999999999999999998776654
No 178
>cd04977 Ig1_NCAM-1_like First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1 and similar proteins. Ig1_NCAM-1 like: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the s
Probab=99.09 E-value=9.9e-10 Score=86.21 Aligned_cols=78 Identities=23% Similarity=0.374 Sum_probs=57.4
Q ss_pred eeEEecCCceEEEEEEEeeecCCeeEEEE-CCEEEEeccCCccceEEEc----cCceEEEcCCCCCCCeEEEEEEEeCCc
Q psy15127 248 SLLIWNHPRVNRLSCFAEGSPLPSVFWTQ-EGSQVLMFPGNAYGHLHVT----QEGTLRIQGVQKEDAGFFVCSALSVAG 322 (633)
Q Consensus 248 ~~~~~~~g~~~~l~C~~~g~p~~~v~W~~-~g~~~~~~~~~~~~~~~~~----~~~~l~i~~~~~~d~G~Y~C~a~n~~g 322 (633)
....+..|+++.|.|.+.|.|+ .+.|++ ++..+.. . .+.... ..++|.|.++..+|.|.|+|.|.|..|
T Consensus 8 ~~~~v~~G~~~~l~C~~~G~p~-~i~W~~~~~~~~~~--~---~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~g 81 (92)
T cd04977 8 SQGEISVGESKFFLCQVIGEPK-DISWFSPNGEKLVT--Q---QQISVVQNDDVRSTLTIYNANIEDAGIYKCVATDAKG 81 (92)
T ss_pred CcEEECCCCeEEEEEEeEeeCC-eEEEECCCCCEecc--C---CCEEEEeCCCCEEEEEEecCCcccCEEEEEEEEcCCC
Confidence 3356778999999999999975 999998 5655432 1 111221 124799999999999999999999975
Q ss_pred e-eEEEEEEE
Q psy15127 323 S-TTVRAFLQ 331 (633)
Q Consensus 323 ~-~~~~~~l~ 331 (633)
. .+.++.|.
T Consensus 82 ~~~~~sv~l~ 91 (92)
T cd04977 82 TESEATVNLK 91 (92)
T ss_pred CcceeEEEEE
Confidence 4 56666654
No 179
>cd05750 Ig_Pro_neuregulin Immunoglobulin (Ig)-like domain in neuregulins (NRGs). Ig_Pro_neuregulin: immunoglobulin (Ig)-like domain in neuregulins (NRGs). NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. There are four members of the neuregulin gene family (NRG1, -2, -3, and -4). The NRG-1 protein, binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. The other NRGs proteins bind one or the other or both of these ErbBs. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates processes such as target cell differentiation, and Schwann cell surv
Probab=99.09 E-value=5.5e-10 Score=84.40 Aligned_cols=72 Identities=21% Similarity=0.308 Sum_probs=54.3
Q ss_pred EEEEEEEee-ecCCeeEEEECCEEEEeccCCccceEEE-ccCceEEEcCCCCCCCeEEEEEEEeCCceeEEEEE
Q psy15127 258 NRLSCFAEG-SPLPSVFWTQEGSQVLMFPGNAYGHLHV-TQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRAF 329 (633)
Q Consensus 258 ~~l~C~~~g-~p~~~v~W~~~g~~~~~~~~~~~~~~~~-~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~ 329 (633)
+.|.|.+.| .|.|.+.|+++|..+.........++.. ...+.|.|.++..+|.|.|+|.|.|..|....++.
T Consensus 1 ~~l~C~~~g~~P~p~~~W~k~g~~l~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~ 74 (75)
T cd05750 1 LVLKCEATSEYPSLRFKWFKDGKELNRKNKPRNIKIRNKKKNSELQINKAKLADSGEYTCVVENILGNDTVTAN 74 (75)
T ss_pred CEEEEEccCCCCCceEEEEcCCeeccccCCcceEEEEecCceEEEEEccCCcccCeEEEEEEEEcCCceeEEEe
Confidence 369999999 9999999999998775321111001111 23457999999999999999999999999877664
No 180
>cd05742 Ig1_VEGFR_like First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor (R) and similar proteins. Ig1_VEGFR_like: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R) related proteins. The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF-A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF
Probab=99.07 E-value=4.8e-10 Score=86.64 Aligned_cols=78 Identities=17% Similarity=0.141 Sum_probs=58.0
Q ss_pred CceEEEEEEEeee--cCCeeEEEECCEEEEeccCCccceE---EEccCceEEEcCCCCCCCeEEEEEEEeCCceeEEEEE
Q psy15127 255 PRVNRLSCFAEGS--PLPSVFWTQEGSQVLMFPGNAYGHL---HVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRAF 329 (633)
Q Consensus 255 g~~~~l~C~~~g~--p~~~v~W~~~g~~~~~~~~~~~~~~---~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~ 329 (633)
|+.+.|.|.+.|. |.+.+.|.+++..+........... .....+.|.|.+++..|+|.|+|.|.|..|..+.++.
T Consensus 1 Ge~~~L~C~~~g~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~v~~~DsG~Y~C~a~n~~~~~~~s~~ 80 (84)
T cd05742 1 GETLVLNCTVLTELNEGVDFQWTYPGKKRGRGKSMVTRQSLSEATELSSTLTIPNATLKDSGTYTCAASSGTMDQKESTK 80 (84)
T ss_pred CCeEEEEEEEEeCCCccEEEEEecCCcccCCceEeecccccccceEEEEEEEECCCChhhCEEEEEEEccCCCceEEEEE
Confidence 6789999999999 7889999988765421100000000 0112357999999999999999999999999988888
Q ss_pred EEE
Q psy15127 330 LQV 332 (633)
Q Consensus 330 l~v 332 (633)
|.|
T Consensus 81 v~v 83 (84)
T cd05742 81 VNI 83 (84)
T ss_pred EEE
Confidence 765
No 181
>cd05727 Ig2_Contactin-2-like Second Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins. Ig2_Contactin-2-like: second Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.
Probab=99.07 E-value=5.3e-10 Score=86.56 Aligned_cols=70 Identities=24% Similarity=0.347 Sum_probs=56.9
Q ss_pred CceEEEcCCeEEEEEEE-eccCCCeEEEEeCCccC--C-CCCeEEcc-cceEEEccCCCCCCeEEEEEEEeCCce
Q psy15127 79 SDATVLSGSVVEFVCRV-GGDPLPTILWRRDDGKM--P-TGRAKILD-DRSLQIENVGPQDEGLYICDVENLVGS 148 (633)
Q Consensus 79 ~~~~~~~G~~~~L~C~~-~~~p~p~i~W~~~~~~i--~-~~~~~~~~-~~~L~i~~v~~~d~G~Y~C~~~n~~g~ 148 (633)
....+.+|+.+.|.|.. .|.|.+.+.|++++.++ . ..+..+.. ++.|.|.+|+.+|+|.|+|.|+|....
T Consensus 11 ~~~~v~eG~~~~L~C~pP~g~P~p~~~W~k~~~~~~~~~d~r~~~~~~~G~L~fs~v~~~D~g~Y~C~A~n~~~~ 85 (96)
T cd05727 11 DEVKVKEGWGVVLFCDPPPHYPDLSYRWLLNEFPNFIPEDGRRFVSQTNGNLYIAKVEASDRGNYSCFVSSPSST 85 (96)
T ss_pred CceeeeeCCcEEEeeCCCCCCCCCEEEEEECCcccccccCCCeEEeCCCCcEEEeecCHhhCceeEEEEEecccC
Confidence 44678999999999987 57899999999998754 2 23444443 789999999999999999999987543
No 182
>PF13895 Ig_2: Immunoglobulin domain; PDB: 2V5R_B 2V5M_A 2V5S_B 2GI7_A 3LAF_A 4DEP_C 3O4O_B 2EC8_A 2E9W_A 1J87_A ....
Probab=99.06 E-value=9.6e-10 Score=84.37 Aligned_cols=79 Identities=35% Similarity=0.661 Sum_probs=62.0
Q ss_pred CCeeeeCCCceEEEcCCeEEEEEEEeccCCCeEEEEeCCccCCCCCeEEcccceEEEccCCCCCCeEEEEEEEeCCce-E
Q psy15127 71 KPFPISEPSDATVLSGSVVEFVCRVGGDPLPTILWRRDDGKMPTGRAKILDDRSLQIENVGPQDEGLYICDVENLVGS-I 149 (633)
Q Consensus 71 ~p~~~~~~~~~~~~~G~~~~L~C~~~~~p~p~i~W~~~~~~i~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~n~~g~-~ 149 (633)
+|.+...+ ..+.+|+.++|.|.+.+.|.+.+.|++++..+.... ..|.|.+++.+|+|.|+|.+.+..+. .
T Consensus 1 kP~l~~~~--~~v~~g~~~~l~C~~~~~p~~~~~w~~~~~~~~~~~------~~~~~~~~~~~~~g~y~C~~~~~~~~~~ 72 (80)
T PF13895_consen 1 KPVLSSSP--QSVEEGDSVTLTCSVSGNPPPQVQWYKNGSPINSSQ------NGLFIPNVSPEDSGNYTCRASNGSGSNT 72 (80)
T ss_dssp --EEEEES--SEEETTSEEEEEEEEESSSSSEEEEEETTEEEEEES------SEEEESSEEGGGTEEEEEEEEETTEEEE
T ss_pred CcEEEccc--eEEeCCCcEEEEEEEEcccceeeeeeeeeeeeeeee------eeeeeeeeccccCEEEEEEEEeCCCCeE
Confidence 46666555 558999999999999998889999999987765321 23778999999999999999996653 6
Q ss_pred EEEEEEEE
Q psy15127 150 SLRASLTV 157 (633)
Q Consensus 150 s~~~~l~V 157 (633)
+..+.|.|
T Consensus 73 s~~~~v~V 80 (80)
T PF13895_consen 73 STSVNVTV 80 (80)
T ss_dssp EEEEEEEE
T ss_pred eeeEEeeC
Confidence 77777765
No 183
>cd05771 IgC_Tapasin_R Tapasin-R immunoglobulin-like domain. IgC_Tapasin_R: Immunoglobulin-like domain on Tapasin-R. Tapasin is a V-C1 (variable-constant) immunoglobulin superfamily molecule present in the endoplasmic reticulum (ER), where it links MHC class I molecules to the transporter associated with antigen processing (TAP). Tapasin-R is a tapasin-related protein that contains similar structural motifs to Tapasin, with some marked differences, especially in the V domain, transmembrane and cytoplasmic regions. The majority of Tapasin-R is located within the ER; however, there may be some expression of Tapasin-R at the cell surface. Tapasin-R lacks an obvious ER retention signal.
Probab=99.06 E-value=1.7e-09 Score=92.62 Aligned_cols=99 Identities=15% Similarity=0.247 Sum_probs=72.1
Q ss_pred ceEEEcCCCC--CCeEEEEEEe------------cCcCCeeeeCCCceEEEcCCeEEEEEEEecc-CC-CeEEEEeCCcc
Q psy15127 48 SVLGARGALS--DDQWKLIAKE------------ALIKPFPISEPSDATVLSGSVVEFVCRVGGD-PL-PTILWRRDDGK 111 (633)
Q Consensus 48 ~~L~i~~v~~--~G~Y~C~a~~------------v~~~p~~~~~~~~~~~~~G~~~~L~C~~~~~-p~-p~i~W~~~~~~ 111 (633)
++|+|.+++. +|.|.|.+.+ +..+|.+...+......+|+.++|.|.+.|. |. +.|.|++++..
T Consensus 1 asL~i~~v~~~D~G~Y~C~~~~~~~~~~~~~~l~v~~~P~v~~~~~~~~~~~~~~~~L~C~a~g~~P~~~~i~W~~~g~~ 80 (139)
T cd05771 1 ASLTLPGLTVHDEGTYICSVSTPPHQAQQIIQLSVSEPPRVRLSLEKLVSMIEEPQTLICHIAGYYPLDVQVEWTREPPG 80 (139)
T ss_pred CeEEECCCCHHHCEEEEEEEEccCcceeeEEEEEEecCCceEEeCCCceeecCCcEEEEEEECCCCCCCeEEEEEECCCC
Confidence 3699999999 9999999977 5667877777766666689999999999885 54 48999999864
Q ss_pred CC------CCC----eEEccc------ceEEEccCCCCCCeEEEEEEEeCC
Q psy15127 112 MP------TGR----AKILDD------RSLQIENVGPQDEGLYICDVENLV 146 (633)
Q Consensus 112 i~------~~~----~~~~~~------~~L~i~~v~~~d~G~Y~C~~~n~~ 146 (633)
.. .+. .....+ +.|.|..-..++.+.|+|.+.+..
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~dgt~~~~s~L~v~~~~~~~g~~ytC~V~H~~ 131 (139)
T cd05771 81 DSPPPVSLSNVSFSSHRQHQDGTYSLSSHLTLEPGTEDAGATYTCRVSHVS 131 (139)
T ss_pred CccceeccCCeEecceEeCCCCCEEEEEEEEecCCccCCCCEEEEEEEcCC
Confidence 21 110 111122 457776666667889999997653
No 184
>PF00041 fn3: Fibronectin type III domain; InterPro: IPR003961 Fibronectins are multi-domain glycoproteins found in a soluble form in plasma, and in an insoluble form in loose connective tissue and basement membranes []. They contain multiple copies of 3 repeat regions (types I, II and III), which bind to a variety of substances including heparin, collagen, DNA, actin, fibrin and fibronectin receptors on cell surfaces. The wide variety of these substances means that fibronectins are involved in a number of important functions: e.g., wound healing; cell adhesion; blood coagulation; cell differentiation and migration; maintenance of the cellular cytoskeleton; and tumour metastasis []. The role of fibronectin in cell differentiation is demonstrated by the marked reduction in the expression of its gene when neoplastic transformation occurs. Cell attachment has been found to be mediated by the binding of the tetrapeptide RGDS to integrins on the cell surface [], although related sequences can also display cell adhesion activity. Plasma fibronectin occurs as a dimer of 2 different subunits, linked together by 2 disulphide bonds near the C terminus. The difference in the 2 chains occurs in the type III repeat region and is caused by alternative splicing of the mRNA from one gene []. The observation that, in a given protein, an individual repeat of one of the 3 types (e.g., the first FnIII repeat) shows much less similarity to its subsequent tandem repeats within that protein than to its equivalent repeat between fibronectins from other species, has suggested that the repeating structure of fibronectin arose at an early stage of evolution. It also seems to suggest that the structure is subject to high selective pressure []. The fibronectin type III repeat region is an approximately 100 amino acid domain, different tandem repeats of which contain binding sites for DNA, heparin and the cell surface []. The superfamily of sequences believed to contain FnIII repeats represents 45 different families, the majority of which are involved in cell surface binding in some manner, or are receptor protein tyrosine kinases, or cytokine receptors.; GO: 0005515 protein binding; PDB: 1UEM_A 1TDQ_A 1X5I_A 2IC2_B 2IBG_C 2IBB_A 3R8Q_A 2FNB_A 1FNH_A 2EDB_A ....
Probab=99.05 E-value=8.5e-10 Score=85.82 Aligned_cols=84 Identities=39% Similarity=0.629 Sum_probs=70.2
Q ss_pred CCCCcEEEEeeCCeEEEEeCCCCCCCCCCcceeEEEEEEEEecCCCCeEEEEEeeeeceEEEecCCCCCeEEEEEEEEec
Q psy15127 412 PPAAPVILNTTRGSVTLGWGEPEPRGGGVAPVIGYTVEYFSSDLQTGWVVAAHRITSTSITVSDLKPDTSYMFIVRAENS 491 (633)
Q Consensus 412 ~p~~~~~~~~~~~~i~l~W~~~~~~~~~~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~~~Y~~~v~a~n~ 491 (633)
+|..+.+.....+++.|+|.++. . +++.+.+|.|+|+..+....+...........++|.+|.|++.|.|+|+|.|.
T Consensus 2 ~P~~l~v~~~~~~sv~v~W~~~~-~--~~~~~~~y~v~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~v~a~~~ 78 (85)
T PF00041_consen 2 APENLSVSNISPTSVTVSWKPPS-S--GNGPITGYRVEYRSVNSTSDWQEVTVPGNETSYTITGLQPGTTYEFRVRAVNS 78 (85)
T ss_dssp SSEEEEEEEECSSEEEEEEEESS-S--TSSSESEEEEEEEETTSSSEEEEEEEETTSSEEEEESCCTTSEEEEEEEEEET
T ss_pred cCcCeEEEECCCCEEEEEEECCC-C--CCCCeeEEEEEEEecccceeeeeeeeeeeeeeeeeccCCCCCEEEEEEEEEeC
Confidence 57778888889999999999997 2 25789999999998876554665555555668999999999999999999999
Q ss_pred cccCCCC
Q psy15127 492 HGLGIPS 498 (633)
Q Consensus 492 ~G~g~~s 498 (633)
.|.|++|
T Consensus 79 ~g~g~~S 85 (85)
T PF00041_consen 79 DGEGPPS 85 (85)
T ss_dssp TEEEEEE
T ss_pred CcCcCCC
Confidence 9998754
No 185
>cd05871 Ig_Semaphorin_classIII Immunoglobulin (Ig)-like domain of class III semaphorin. Ig_Semaphorin_class III; Immunoglobulin (Ig)-like domain of class III semaphorins. Semaphorins are classified into various classes on the basis of structural features additional to the Sema domain. Class III semaphorins are a vertebrate class having a Sema domain, an Ig domain, a short basic domain, and are secreted. They have been shown to be axonal guidance cues and have a part in the regulation of the cardiovascular, immune and respiratory systems. Sema3A, the prototype member of this class III subfamily, induces growth cone collapse and is an inhibitor of axonal sprouting. In perinatal rat cortex as a chemoattractant, it functions to direct, for pyramidal neurons, the orientated extension of apical dendrites. It may play a role, prior to the development of apical dendrites, in signaling the radial migration of newborn cortical neurons towards the upper layers. Sema3A selectively inhibits vascula
Probab=99.03 E-value=2.3e-09 Score=83.53 Aligned_cols=78 Identities=18% Similarity=0.302 Sum_probs=58.6
Q ss_pred eEEEcCCeEEEEEEEeccCCCeEEEEeCCc--cC----CCCCeEEcccceEEEccCCCCCCeEEEEEEE-eCCceEEEEE
Q psy15127 81 ATVLSGSVVEFVCRVGGDPLPTILWRRDDG--KM----PTGRAKILDDRSLQIENVGPQDEGLYICDVE-NLVGSISLRA 153 (633)
Q Consensus 81 ~~~~~G~~~~L~C~~~~~p~p~i~W~~~~~--~i----~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~-n~~g~~s~~~ 153 (633)
+.+.+|++++|.|.. +.|.|.++|||++. .. ..+.+....++.|.|.+++.+|+|.|+|.+. +..+.....+
T Consensus 6 ~~~~eG~~v~L~C~~-~~p~p~v~Wykq~~g~~~~~~~~~~~r~~~~~~~L~I~~~~~~DsG~Y~C~a~~~~~~~~~~~~ 84 (91)
T cd05871 6 VYGVENNSTFLECLP-KSPQASVKWLFQRGGDQRKEEVKTEERLIHTERGLLLRSLQRSDAGVYTCTAVEHSFSQTLAKY 84 (91)
T ss_pred EEEecCCcEEEEEEC-CCCCceEEEEEECCCCCccccccccccEEEecCeEEEeeCChhHCEEEEEEEEccCCeEEEEEE
Confidence 457899999999996 47888999998432 21 1223333455789999999999999999998 5666666677
Q ss_pred EEEEEe
Q psy15127 154 SLTVHL 159 (633)
Q Consensus 154 ~l~V~~ 159 (633)
+|.|..
T Consensus 85 ~l~v~~ 90 (91)
T cd05871 85 TLHVIE 90 (91)
T ss_pred EEEEec
Confidence 777753
No 186
>smart00408 IGc2 Immunoglobulin C-2 Type.
Probab=99.02 E-value=1.6e-09 Score=78.60 Aligned_cols=63 Identities=33% Similarity=0.675 Sum_probs=52.8
Q ss_pred cCCeEEEEEEEeccCCCeEEEEeCCccCCCCCeEEcccceEEEccCCCCCCeEEEEEEEeCCc
Q psy15127 85 SGSVVEFVCRVGGDPLPTILWRRDDGKMPTGRAKILDDRSLQIENVGPQDEGLYICDVENLVG 147 (633)
Q Consensus 85 ~G~~~~L~C~~~~~p~p~i~W~~~~~~i~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~n~~g 147 (633)
+|++++|.|.+.+.+.+.+.|++++..+............|.|.+++.+|+|.|+|.+.|..|
T Consensus 1 ~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~n~~g 63 (63)
T smart00408 1 EGQSVTLTCPAEGDPVPNITWLKDGKPLPESNRLSASGSTLTIKSVSLEDSGEYTCVAENSAG 63 (63)
T ss_pred CCceEEEEeeCccCCCCeEEEEECCEECCCCCEEecCCcEEEEeeCCcccCEEEEEEEecCCC
Confidence 589999999988888899999999988774333344567899999999999999999988654
No 187
>cd05882 Ig1_Necl-1 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). Ig1_Necl-1: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-1, Necl-1 (also known as celll adhesion molecule 3 (CADM3), SynCAM2, IGSF4). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the format
Probab=99.01 E-value=3.7e-09 Score=82.86 Aligned_cols=82 Identities=21% Similarity=0.273 Sum_probs=58.1
Q ss_pred eeEEecCCceEEEEEEEeeecCCeeEEEECCEEEEeccCC---ccceEEEc----cCceEEEcCCCCCCCeEEEEEEEeC
Q psy15127 248 SLLIWNHPRVNRLSCFAEGSPLPSVFWTQEGSQVLMFPGN---AYGHLHVT----QEGTLRIQGVQKEDAGFFVCSALSV 320 (633)
Q Consensus 248 ~~~~~~~g~~~~l~C~~~g~p~~~v~W~~~g~~~~~~~~~---~~~~~~~~----~~~~l~i~~~~~~d~G~Y~C~a~n~ 320 (633)
....+..|+++.|.|.+.+.|.+.+.|++++..+...... ...++... ....|.|.++..+|+|.|+|.+..
T Consensus 5 ~~~tv~~G~tv~L~C~v~g~~~~~v~W~k~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~nV~~~D~G~YtC~~~t- 83 (95)
T cd05882 5 QDETVAVGGTVTLKCGVKEHDNSSLQWSNTAQQTLYFGEKRALRDNRIQLVKSTPTELIISISNVQLSDEGEYTCSIFT- 83 (95)
T ss_pred ccEEEecCCcEEEEEEEeCCCCCeEEEeccCccEEEeCCeEEEeCCeEEEEeCCCceEEEEECCCCcccCEEEEEEEEe-
Confidence 4567788999999999999999999999988654221111 11233322 235899999999999999999977
Q ss_pred CceeEEEEEE
Q psy15127 321 AGSTTVRAFL 330 (633)
Q Consensus 321 ~g~~~~~~~l 330 (633)
.-..++.+.|
T Consensus 84 ~~~~~~~~~~ 93 (95)
T cd05882 84 MPVRTAKATV 93 (95)
T ss_pred eccccEEEEE
Confidence 2233444444
No 188
>cd05861 Ig1_PDGFR-alphabeta Frst immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b). Ig1_PDGFR-alphabeta: The first immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b). PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFRalpha binds to all three PDGFs, whereas the PDGFRbeta binds only to PDGF-B. PDGFRs alpha and beta have similar organization: an extracellular component with five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFRalpha and PDGFRbeta are essential for normal development.
Probab=99.00 E-value=2e-09 Score=82.74 Aligned_cols=78 Identities=18% Similarity=0.290 Sum_probs=56.2
Q ss_pred CceEEEEEEEeeecCCeeEEEECCEEEEeccCCccceEEEc---cCceEEEcCCCCCCCeEEEEEEEeCCc--eeEEEEE
Q psy15127 255 PRVNRLSCFAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVT---QEGTLRIQGVQKEDAGFFVCSALSVAG--STTVRAF 329 (633)
Q Consensus 255 g~~~~l~C~~~g~p~~~v~W~~~g~~~~~~~~~~~~~~~~~---~~~~l~i~~~~~~d~G~Y~C~a~n~~g--~~~~~~~ 329 (633)
|++++|.|.+.+.|.+.+.|+++++....... ...+.... ....|.|.+++.+|+|.|+|.|.|..+ ..+.++.
T Consensus 1 Ge~~~l~C~~~~~~~~~~~W~~~~~~~~~~~~-~~~~~~~~~~~~~s~L~I~~~~~~DsG~Y~C~a~n~~~~~~~~~sv~ 79 (84)
T cd05861 1 GETITVNCIVQGNEVVDFSWTYPGKDIGKGIP-EVEEVKVPATTLRSTLTFPHATVEDSGTYECAAHESTQDQKAFKKVN 79 (84)
T ss_pred CCcEEEEEEEECCCccEEEEEECCccCCCCce-EEEEEecCCcEEEEEEEECCCCcCCCEEEEEEEEECccCcceeEEEE
Confidence 68899999999999999999998764211000 00011111 234799999999999999999999876 5677777
Q ss_pred EEEE
Q psy15127 330 LQVR 333 (633)
Q Consensus 330 l~v~ 333 (633)
|.|.
T Consensus 80 i~V~ 83 (84)
T cd05861 80 ITVH 83 (84)
T ss_pred EEEe
Confidence 7664
No 189
>cd05895 Ig_Pro_neuregulin-1 Immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1. Ig_Pro_neuregulin-1: immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1. There are many NRG-1 isoforms which arise from the alternative splicing of mRNA. NRG-1 belongs to the neuregulin gene family, which is comprised of four genes. This group represents NRG-1. NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, and heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. The NRG-1 protein binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates process
Probab=98.99 E-value=2.3e-09 Score=81.06 Aligned_cols=71 Identities=20% Similarity=0.292 Sum_probs=52.8
Q ss_pred EEEEEEEee-ecCCeeEEEECCEEEEeccCCccceEEEc---cCceEEEcCCCCCCCeEEEEEEEeCCceeEEEEE
Q psy15127 258 NRLSCFAEG-SPLPSVFWTQEGSQVLMFPGNAYGHLHVT---QEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRAF 329 (633)
Q Consensus 258 ~~l~C~~~g-~p~~~v~W~~~g~~~~~~~~~~~~~~~~~---~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~ 329 (633)
+.|.|.+.+ .|.+.+.|+++|..+..... ...++... ..+.|.|.++..+|+|.|+|.|.|..|..+.++.
T Consensus 1 ~~L~C~a~~~~p~~~~~W~~~g~~i~~~~~-~~~~~~~~~~~~~~~L~I~~~~~~DsG~Y~C~a~N~~g~~~~~~~ 75 (76)
T cd05895 1 LVLRCETVSEYPSLRFKWFKNGKEIGAKNK-PDNKIKIRKKKKSSELQISKASLADNGEYKCMVSSKLGNDSVTAN 75 (76)
T ss_pred CEEEEecccCCCCCceEEEECCcccccCCC-CCceEEEEeCCcEEEEEECcCCcccCEEEEEEEEeCCCceeEEEe
Confidence 469999875 67789999999987742211 11122221 2357999999999999999999999998887764
No 190
>cd05845 Ig2_L1-CAM_like Second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins. Ig2_L1-CAM_like: domain similar to the second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.
Probab=98.97 E-value=1.8e-09 Score=83.43 Aligned_cols=70 Identities=23% Similarity=0.256 Sum_probs=58.4
Q ss_pred CCceEEEcCCeEEEEEE-EeccCCCeEEEEeCCcc-CC-CCCeEEcccceEEEccCCCCCCe-EEEEEEEeCCc
Q psy15127 78 PSDATVLSGSVVEFVCR-VGGDPLPTILWRRDDGK-MP-TGRAKILDDRSLQIENVGPQDEG-LYICDVENLVG 147 (633)
Q Consensus 78 ~~~~~~~~G~~~~L~C~-~~~~p~p~i~W~~~~~~-i~-~~~~~~~~~~~L~i~~v~~~d~G-~Y~C~~~n~~g 147 (633)
...+.+.+|+.+.|.|. ..|.|.|.|.|++++.. +. ..+.....++.|.|.+|+.+|+| .|.|.|.|...
T Consensus 10 ~~~v~V~eG~~~~L~C~pP~g~P~P~i~W~~~~~~~i~~~~Ri~~~~~GnL~fs~v~~~D~g~~Y~C~a~~~~~ 83 (95)
T cd05845 10 IRPVEVEEGDSVVLPCNPPKSAVPLRIYWMNSDLLHITQDERVSMGQNGNLYFANVEEQDSHPDYICHAHFPGL 83 (95)
T ss_pred cceeEEecCCCEEEEecCCCCCCCCEEEEECCCCccccccccEEECCCceEEEEEEehhhCCCCeEEEEEcccc
Confidence 46788999999999997 58999999999987654 33 34555556799999999999999 89999998754
No 191
>cd05717 Ig1_Necl-1-3_like First (N-terminal) immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-3 (also known as cell adhesion molecules CADM3, CADM1, and CADM2 respectively). Ig1_Necl-1-3_like: N-terminal immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), and Necl-3 (CADM2). At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1, Necl-2, and Necl-3 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the form
Probab=98.97 E-value=4.9e-09 Score=83.15 Aligned_cols=78 Identities=27% Similarity=0.551 Sum_probs=57.3
Q ss_pred CceEEEcCCeEEEEEEEeccCCCeEEEEeCCcc---------CCCCCeEEc----ccceEEEccCCCCCCeEEEEEEEeC
Q psy15127 79 SDATVLSGSVVEFVCRVGGDPLPTILWRRDDGK---------MPTGRAKIL----DDRSLQIENVGPQDEGLYICDVENL 145 (633)
Q Consensus 79 ~~~~~~~G~~~~L~C~~~~~p~p~i~W~~~~~~---------i~~~~~~~~----~~~~L~i~~v~~~d~G~Y~C~~~n~ 145 (633)
+++.+.+|++++|.|.+.+.+.+.+.|++.+.. +..+++... .+..|.|.+++.+|+|.|+|.+.+.
T Consensus 5 ~~~~v~~G~~v~L~C~~~~~~~~~v~W~~p~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~~ 84 (95)
T cd05717 5 QDVTVVEGGTATLKCRVKNNDNSSLQWSNPNQQTLYFNDKRALRDNRIQLVNFSANELSISISNVSLSDEGRYTCSLYTM 84 (95)
T ss_pred CcEEEcCCCCEEEEEEECCCCCceEEEeCCCCcEEEeccccccccCcEEEEcCCCCeeEEEEccCCcccCEEEEEEEecC
Confidence 567799999999999998888889999863321 222344332 2357999999999999999999876
Q ss_pred CceEEEEEEEEE
Q psy15127 146 VGSISLRASLTV 157 (633)
Q Consensus 146 ~g~~s~~~~l~V 157 (633)
.. .++.+.|+|
T Consensus 85 ~~-~~~~~~~~v 95 (95)
T cd05717 85 PV-QTAKATVTV 95 (95)
T ss_pred CC-ceEEEEEEC
Confidence 43 355555554
No 192
>cd05754 Ig3_Perlecan_like Third immunoglobulin (Ig)-like domain found in Perlecan and similar proteins. Ig3_Perlecan_like: domain similar to the third immunoglobulin (Ig)-like domain found in Perlecan. Perlecan is a large multi-domain heparin sulfate proteoglycan, important in tissue development and organogenesis. Perlecan can be represented as 5 major portions; its fourth major portion (domain IV) is a tandem repeat of immunoglobulin-like domains (Ig2-Ig15), which can vary in size due to alternative splicing. Perlecan binds many cellular and extracellular ligands. Its domain IV region has many binding sites. Some of these have been mapped at the level of individual Ig-like domains, including a site restricted to the Ig5 domain for heparin/sulfatide, a site restricted to the Ig3 domain for nidogen-1 and nidogen-2, a site restricted to Ig4-5 for fibronectin, and sites restricted to Ig2 and to Ig13-15 for fibulin-2.
Probab=98.95 E-value=3.6e-09 Score=81.97 Aligned_cols=75 Identities=25% Similarity=0.375 Sum_probs=60.6
Q ss_pred eeEEecCCceEEEEEEEee-ecCCeeEEEECCEEEEeccCCccceEEEccCceEEEcCCCCCCCeEEEEEEEeCCceeEE
Q psy15127 248 SLLIWNHPRVNRLSCFAEG-SPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTTV 326 (633)
Q Consensus 248 ~~~~~~~g~~~~l~C~~~g-~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~ 326 (633)
....+.+|+.++|.|.+.+ .|.+.+.|++++..+. . + ....++.|.|.++..+|+|.|+|.|.|..|..+.
T Consensus 9 ~~~~v~~G~~v~L~C~~~~~~~~~~i~W~~~~~~~~---~----~-~~~~~~~L~I~~v~~~DsG~Y~C~a~n~~g~~~~ 80 (85)
T cd05754 9 RSQEVRPGADVSFICRAKSKSPAYTLVWTRVGGGLP---S----R-AMDFNGILTIRNVQLSDAGTYVCTGSNMLDTDEA 80 (85)
T ss_pred CceEEcCCCCEEEEEEcCCCCCCcEEEEEECCCcCC---C----c-ccccCCEEEECCCCHHHCEEEEEEEeccCCeEeE
Confidence 4456678999999999975 6888999999986532 1 1 1223568999999999999999999999999988
Q ss_pred EEEE
Q psy15127 327 RAFL 330 (633)
Q Consensus 327 ~~~l 330 (633)
++.|
T Consensus 81 ~~~l 84 (85)
T cd05754 81 TATL 84 (85)
T ss_pred EEEE
Confidence 8765
No 193
>cd05898 Ig5_KIRREL3 Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2). Ig5_KIRREL3: the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1). These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development. Neph1 and 2 may mediate axonal guidance and synapse formation in certain areas of the CNS. In the kidney, they participate in the formation of the slit diaphragm.
Probab=98.95 E-value=7.9e-09 Score=80.84 Aligned_cols=81 Identities=20% Similarity=0.299 Sum_probs=61.3
Q ss_pred ceeEEecCCceEEEEEEEeeecCC-eeEEEECCEEEEeccCCccceEEEc-------cCceEEEcCCCCCC-CeEEEEEE
Q psy15127 247 ASLLIWNHPRVNRLSCFAEGSPLP-SVFWTQEGSQVLMFPGNAYGHLHVT-------QEGTLRIQGVQKED-AGFFVCSA 317 (633)
Q Consensus 247 ~~~~~~~~g~~~~l~C~~~g~p~~-~v~W~~~g~~~~~~~~~~~~~~~~~-------~~~~l~i~~~~~~d-~G~Y~C~a 317 (633)
.......+|+.+.|.|.+.+.|+| .+.|.+++..+... ...++.+. ..+.|.|.++...| .|.|.|.|
T Consensus 8 ~~s~~~~~G~~~~L~C~~~s~P~P~~i~W~w~~~~i~~~---~~~r~~I~~~~~~~g~~S~L~I~~~~~~d~~g~Y~C~a 84 (98)
T cd05898 8 EQVQYAVRGERGKVKCFIGSTPPPDRIAWAWKENVLESG---TSERYTVERTSTGSGVLSTLTINNIMEADFQTHYNCTA 84 (98)
T ss_pred CceEEEeCCCcEEEEEEEccCCCCcEEEEEEccccccCC---CCCCEEEEEEccCCCcEEEEEECCCccccCCcEEEEEE
Confidence 344556789999999999999987 67999888755421 12333332 23479999998766 79999999
Q ss_pred EeCCceeEEEEEE
Q psy15127 318 LSVAGSTTVRAFL 330 (633)
Q Consensus 318 ~n~~g~~~~~~~l 330 (633)
.|.+|..+..+.|
T Consensus 85 ~N~~G~d~~~i~L 97 (98)
T cd05898 85 WNSFGSGTAIIQL 97 (98)
T ss_pred EeCCccceEEEEe
Confidence 9999999887765
No 194
>cd04967 Ig1_Contactin First Ig domain of contactin. Ig1_Contactin: First Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 weeks postnata
Probab=98.94 E-value=6.6e-09 Score=81.61 Aligned_cols=69 Identities=29% Similarity=0.482 Sum_probs=53.7
Q ss_pred CCceEEEEEEEeeecCCeeEEEECCEEEEeccCCccceEEEccCceEEEcCCCC-CCCeEEEEEEEeCCceeEE
Q psy15127 254 HPRVNRLSCFAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQK-EDAGFFVCSALSVAGSTTV 326 (633)
Q Consensus 254 ~g~~~~l~C~~~g~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~~~~l~i~~~~~-~d~G~Y~C~a~n~~g~~~~ 326 (633)
.++.+.|.|.+.|+|.|.++|++++..+..... .+.. ..++.|.|.++.. +|.|.|+|.|.|..|....
T Consensus 18 ~~~~~~l~C~~~g~p~p~i~W~k~~~~l~~~~~---~~~~-~~~~~L~i~~~~~~~d~G~Y~C~a~N~~G~~~S 87 (91)
T cd04967 18 DEGKVSLNCRARGSPPPTYRWLMNGTEIDDEPD---SRYS-LVGGNLVISNPSKAKDAGRYQCLASNIVGTVLS 87 (91)
T ss_pred CCCEEEEEEeeeEcCCCEEEEEECCEECCCCCC---CCEE-EECCEEEEecCCccCCCEEEEEEEEcCCCEEEe
Confidence 346799999999999999999999987632211 2222 2456899988874 8999999999999997644
No 195
>cd05729 Ig2_FGFR_like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor and similar proteins. Ig2_FGFR_like: domain similar to the second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three Ig-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin
Probab=98.92 E-value=8.2e-09 Score=80.18 Aligned_cols=81 Identities=23% Similarity=0.344 Sum_probs=61.6
Q ss_pred EEecCCceEEEEEEEeeecCCeeEEEECCEEEEeccCCccceEE-EccCceEEEcCCCCCCCeEEEEEEEeCCceeEEEE
Q psy15127 250 LIWNHPRVNRLSCFAEGSPLPSVFWTQEGSQVLMFPGNAYGHLH-VTQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRA 328 (633)
Q Consensus 250 ~~~~~g~~~~l~C~~~g~p~~~v~W~~~g~~~~~~~~~~~~~~~-~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~ 328 (633)
.....|+.+.|.|.+.+.|.+.+.|++++..+.... ...... ......|.|.++..+|.|.|.|.+.|..|..+.++
T Consensus 4 ~~~~~G~~~~l~C~~~~~p~~~v~W~k~~~~~~~~~--~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~n~~g~~~~~~ 81 (85)
T cd05729 4 HAVPAGSTVRLKCPASGNPRPTITWLKDGKPFKKEH--RIGGYKVRKKKWTLILESVVPSDSGKYTCIVENKYGSINHTY 81 (85)
T ss_pred eEecCCCcEEEEEEcCCCCCCeEEEEECCEECcccC--ceeEEEccCcEEEEEEeECCcccCEEEEEEEEECCceEEEEE
Confidence 445678999999999999999999999998764111 111111 11223699999999999999999999999988887
Q ss_pred EEEE
Q psy15127 329 FLQV 332 (633)
Q Consensus 329 ~l~v 332 (633)
.|.|
T Consensus 82 ~l~v 85 (85)
T cd05729 82 KVDV 85 (85)
T ss_pred EEeC
Confidence 7653
No 196
>cd05897 Ig2_IL1R2_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2). Ig2_IL1R2_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds the type II (IL1R2) represented in this group. Mature IL1R2 consists of three IG-like domains, a transmembrane domain, and a short cytoplasmic domain. It lacks the large cytoplasmic domain of Mature IL1R1, and does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta.
Probab=98.92 E-value=4.2e-09 Score=81.71 Aligned_cols=77 Identities=17% Similarity=0.285 Sum_probs=58.1
Q ss_pred eEEEcCCeEEEEEEE-e----ccCCCeEEEEeCCccCCCCC--eEE-cccceEEEccCCCCCCeEEEEEEEeCCce----
Q psy15127 81 ATVLSGSVVEFVCRV-G----GDPLPTILWRRDDGKMPTGR--AKI-LDDRSLQIENVGPQDEGLYICDVENLVGS---- 148 (633)
Q Consensus 81 ~~~~~G~~~~L~C~~-~----~~p~p~i~W~~~~~~i~~~~--~~~-~~~~~L~i~~v~~~d~G~Y~C~~~n~~g~---- 148 (633)
..+.+|.+..|.|.- . ..+.+.++||||+.++.... ... ..+..|.|.+|..+|+|.|+|.+.+..+.
T Consensus 5 ~~~~~~~~~~l~Cp~~~~f~~~~~~~~v~WYKd~~~l~~~~~~~~~~~~~~~L~I~~v~~~D~G~YtC~~~~~~~g~~y~ 84 (95)
T cd05897 5 QILFTSTSGKLVCPDLSDFTINRTDVELQWYKDSVLLDKDNEKFYSLKGSTYLHIIDVSLNDSGYYTCKLQFTHEGKKYN 84 (95)
T ss_pred eEeccccCcEEECCCHHHcccCCCCCcEEEccCCEECcCCCcceEecCCCCEEEEEEcChhhCEEEEEEEEEeeCCEEEE
Confidence 457889999999973 2 34667899999999986542 222 23468999999999999999999988654
Q ss_pred EEEEEEEEE
Q psy15127 149 ISLRASLTV 157 (633)
Q Consensus 149 ~s~~~~l~V 157 (633)
.++.+.|.|
T Consensus 85 vtr~~~l~v 93 (95)
T cd05897 85 ITRIIKLRI 93 (95)
T ss_pred EEEEEEEEE
Confidence 355555554
No 197
>cd05862 Ig1_VEGFR First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R). IG1_VEGFR: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF_A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angioge
Probab=98.91 E-value=7.9e-09 Score=79.74 Aligned_cols=73 Identities=22% Similarity=0.267 Sum_probs=55.8
Q ss_pred CCeEEEEEEEeccCC--CeEEEEeCCccCCC----C--CeEE----cccceEEEccCCCCCCeEEEEEEEeCCceEEEEE
Q psy15127 86 GSVVEFVCRVGGDPL--PTILWRRDDGKMPT----G--RAKI----LDDRSLQIENVGPQDEGLYICDVENLVGSISLRA 153 (633)
Q Consensus 86 G~~~~L~C~~~~~p~--p~i~W~~~~~~i~~----~--~~~~----~~~~~L~i~~v~~~d~G~Y~C~~~n~~g~~s~~~ 153 (633)
|+++.|.|.+.+.+. ..+.|.+.+..+.. . +... ...+.|.|.+++.+|+|.|+|.|.|..+.....+
T Consensus 1 Ge~~~L~C~~~~~~~~~~~~~W~~p~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~~~~~DsG~Y~C~a~n~~~~~~~~t 80 (86)
T cd05862 1 GEKLVLNCTARTELNVGIDFQWDYPGKKEQRAKSVSENRRSLQEHTELSSTLTIENVTLSDLGRYTCTASSGQMIAKNST 80 (86)
T ss_pred CCcEEEEEEEEeCCCCcEEEEEEcCCcccccceecccccccccccceeeeEEEEecCCcccCEEEEEEEeecceEecccE
Confidence 789999999987554 47899887764311 1 1111 1235899999999999999999999999888888
Q ss_pred EEEEE
Q psy15127 154 SLTVH 158 (633)
Q Consensus 154 ~l~V~ 158 (633)
.|.|.
T Consensus 81 ~~~V~ 85 (86)
T cd05862 81 IVIVH 85 (86)
T ss_pred EEEEe
Confidence 88875
No 198
>cd07701 Ig1_Necl-3 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Ig1_Necl-3: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-3, Necl-3 (also known as cell adhesion molecule 2 (CADM2), SynCAM2, IGSF4D). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-3 accumulates in central and peripheral nervous system tissue, and has been shown to selectively interact with oligodendrocytes.
Probab=98.90 E-value=1.6e-08 Score=79.60 Aligned_cols=85 Identities=21% Similarity=0.371 Sum_probs=59.6
Q ss_pred ceeEEecCCceEEEEEEEeeecCCeeEEEECCEEEEecc---CCccceEEEc----cCceEEEcCCCCCCCeEEEEEEEe
Q psy15127 247 ASLLIWNHPRVNRLSCFAEGSPLPSVFWTQEGSQVLMFP---GNAYGHLHVT----QEGTLRIQGVQKEDAGFFVCSALS 319 (633)
Q Consensus 247 ~~~~~~~~g~~~~l~C~~~g~p~~~v~W~~~g~~~~~~~---~~~~~~~~~~----~~~~l~i~~~~~~d~G~Y~C~a~n 319 (633)
...+.+.+|+++.|.|.+.+.|.+.+.|++.+..+.... .....++... ...+|.|.++..+|+|.|+|.+.+
T Consensus 4 ~~~v~v~eG~~v~L~C~~~~~p~~~v~W~~~~~~~l~~~~~~~~~~~r~~~~~~~~~~~sL~I~~v~~~DsG~Y~C~~~t 83 (95)
T cd07701 4 TQNVTVVEGGTANLTCRVDQNDNTSLQWSNPAQQTLYFDDKKALRDNRIELVRASWHELSISISDVSLSDEGQYTCSLFT 83 (95)
T ss_pred cceEEEecCCcEEEEEEEecCCceEEEEeCCCCeEEEEcCcccccCCCEEEEECCCCcEEEEECcCCcccCEEEEEEeEe
Confidence 345678899999999999999999999987544322111 1122344332 335899999999999999999987
Q ss_pred CCceeEEEEEEEE
Q psy15127 320 VAGSTTVRAFLQV 332 (633)
Q Consensus 320 ~~g~~~~~~~l~v 332 (633)
. ...+.++.|.|
T Consensus 84 ~-~~~~~~~~l~v 95 (95)
T cd07701 84 M-PVKTSKAYLTV 95 (95)
T ss_pred e-cCccEEEEEEC
Confidence 4 33355555543
No 199
>cd05873 Ig_Sema4D_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4D. Ig_Sema4D_like; Immunoglobulin (Ig)-like domain of Sema4D. Sema4D is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4D has extracellular Sema and Ig domains, a transmembrane domain, and a short cytoplasmic domain. Sema4D plays a part in the development of GABAergic synapses. Sema4D in addition is an immune semaphorin. It is abundant on resting T cells; its expression is weak on resting B cells and antigen presenting cells (APCs), but is upregulated by various stimuli. The receptor used by Sema4D in the immune system is CD72. Sem4D enhances the activation of B cells and DCs through binding CD72, perhaps by reducing CD72s inhibitory signals. The receptor used by Sema4D in the non-lymphatic tissues is plexin-B1. Sem4D is anchored to the cell surface but its extracellular domain can be released from the cell surface by a metalloproteas
Probab=98.89 E-value=1.6e-08 Score=77.29 Aligned_cols=68 Identities=18% Similarity=0.284 Sum_probs=53.6
Q ss_pred eeEEecCCceEEEEEEEeeecCCeeEEEECCEEEEeccCCccceEEEccCceEEEcCCCCCCCeEEEEEEEeCC
Q psy15127 248 SLLIWNHPRVNRLSCFAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVA 321 (633)
Q Consensus 248 ~~~~~~~g~~~~l~C~~~g~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~ 321 (633)
....+..|+++.|.|.+.+ +.+++.|++||..+... ..+... .++.|.|.+++.+|+|.|+|.|.+..
T Consensus 4 ~~~~v~~G~~v~L~C~~~~-~~~~i~W~~ng~~i~~~----~~r~~~-~~~~L~I~nv~~~DsG~Y~C~a~e~~ 71 (87)
T cd05873 4 RQRTFKLGNNAELKCSPKS-NLARVVWKFDGKVLTPE----SAKYLL-YRDGLLIFNASEADAGRYQCLSVEKS 71 (87)
T ss_pred ceEEEECCCCEEEEEECCC-CCCeEEEEECCEECCCC----CceEEE-ECCcEEEeCCCHHHCEEEEEEEEecc
Confidence 3456778999999999854 67899999999987521 123333 45689999999999999999998763
No 200
>cd05752 Ig1_FcgammaR_like Frst immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins. Ig1_FcgammaR_like: domain similar to the first immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.
Probab=98.89 E-value=4.1e-09 Score=79.34 Aligned_cols=60 Identities=22% Similarity=0.352 Sum_probs=49.8
Q ss_pred eeEEecCCceEEEEEEEeeecCC-eeEEEECCEEEEeccCCccceEEEccCceEEEcCCCCCCCeEEEEEEEeC
Q psy15127 248 SLLIWNHPRVNRLSCFAEGSPLP-SVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSV 320 (633)
Q Consensus 248 ~~~~~~~g~~~~l~C~~~g~p~~-~v~W~~~g~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~ 320 (633)
....+.+|++++|.|.+.+.|.+ .+.|+|||..+. .....|.|.++ .+|+|.|+|+|.|.
T Consensus 8 ~~~~v~~G~~V~L~C~~~~~p~~~~~~W~kng~~l~------------~~~~~l~i~~~-~~dsG~Y~C~a~~~ 68 (78)
T cd05752 8 PWTTIFQGEKVTLTCNGFNSPEQNSTQWYHNGKLLE------------TTTNSYRIRAA-NNDSGEYRCQTQGS 68 (78)
T ss_pred CCeEeeCCCCEEEEEeCCCCCCCccEEEEECCEEee------------ccCCeEEEeec-ccCCEEeEEECCCC
Confidence 34556789999999999998864 799999998762 13458999999 99999999999875
No 201
>cd05896 Ig1_IL1RAPL-1_like First immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1). Ig1_ IL1RAPL-1_like: domain similar to the first immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1). IL-1 alpha and IL-1 beta are cytokines which participates in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of
Probab=98.89 E-value=1.2e-08 Score=79.19 Aligned_cols=79 Identities=24% Similarity=0.365 Sum_probs=59.3
Q ss_pred CceEEEcCCeEEEEEEEe-----------ccCCCeEEEEeCCccCCCC-------CeEEcccceEEEccCCCCCCeEEEE
Q psy15127 79 SDATVLSGSVVEFVCRVG-----------GDPLPTILWRRDDGKMPTG-------RAKILDDRSLQIENVGPQDEGLYIC 140 (633)
Q Consensus 79 ~~~~~~~G~~~~L~C~~~-----------~~p~p~i~W~~~~~~i~~~-------~~~~~~~~~L~i~~v~~~d~G~Y~C 140 (633)
....+.+||.+.|.|... ......+.|+|++..+... .+....+..|.|.++..+|+|.|+|
T Consensus 8 ~~~~~~~GE~v~l~C~~~~~~~~~~~~~~~~~~~~v~WyK~~~~~~~~~~~~~~~~Ri~~~~~~Lwf~Pa~~eDSG~Y~C 87 (104)
T cd05896 8 KKYMVLAGEPVRIKCALFYGYIRTNYSMAQSAGLSLMWYKSSGDGEEPIEIIFDGVRMSKEEDSIWFRPAELQDSGLYTC 87 (104)
T ss_pred eeEEEcCCCeEEEECCCccccccccccccccCCceEEEEECCCCCCCCCcccccceeEEEeCCEEEEEeCChhhCeEEEE
Confidence 346789999999999962 1123379999997544321 2445567899999999999999999
Q ss_pred EEEeCCceEEEEEEEEE
Q psy15127 141 DVENLVGSISLRASLTV 157 (633)
Q Consensus 141 ~~~n~~g~~s~~~~l~V 157 (633)
++.|........+.|+|
T Consensus 88 ~~rN~t~C~~~~i~l~V 104 (104)
T cd05896 88 VLRNSTYCMKVSMSLTV 104 (104)
T ss_pred EECCCCcceEEEEEEEC
Confidence 99998766666666654
No 202
>smart00410 IG_like Immunoglobulin like. IG domains that cannot be classified into one of IGv1, IGc1, IGc2, IG.
Probab=98.88 E-value=3e-08 Score=76.99 Aligned_cols=80 Identities=36% Similarity=0.675 Sum_probs=63.7
Q ss_pred CCceEEEcCCeEEEEEEEeccCCCeEEEEeC-CccCC-CCCeEEccc---ceEEEccCCCCCCeEEEEEEEeCCceEEEE
Q psy15127 78 PSDATVLSGSVVEFVCRVGGDPLPTILWRRD-DGKMP-TGRAKILDD---RSLQIENVGPQDEGLYICDVENLVGSISLR 152 (633)
Q Consensus 78 ~~~~~~~~G~~~~L~C~~~~~p~p~i~W~~~-~~~i~-~~~~~~~~~---~~L~i~~v~~~d~G~Y~C~~~n~~g~~s~~ 152 (633)
|..+.+..|+++.|.|.+.+.+.+.+.|+++ +..+. .++...... ..|.|.+++..|+|.|.|.+.+..+.....
T Consensus 1 ~~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~v~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~v~~~~~~~~~~ 80 (86)
T smart00410 1 PPSVTVKEGESVTLSCEVSGSPPPEVTWYKQGGKLLAESGRFSVSRSGSNSTLTISNVTPEDSGTYTCAATNSSGSASST 80 (86)
T ss_pred CCcEEEeCCCeEEEEEEEccCCCCeEEEEECCCEEcCCCCcEEEEEcCCeeEEEEEeeccccCeEEEEEEEcCCCeEEEE
Confidence 3466788999999999998877889999998 77765 333333333 589999999999999999999887776666
Q ss_pred EEEEE
Q psy15127 153 ASLTV 157 (633)
Q Consensus 153 ~~l~V 157 (633)
+.|.|
T Consensus 81 ~~l~V 85 (86)
T smart00410 81 TTLTV 85 (86)
T ss_pred EEEEE
Confidence 76665
No 203
>smart00409 IG Immunoglobulin.
Probab=98.88 E-value=3e-08 Score=76.99 Aligned_cols=80 Identities=36% Similarity=0.675 Sum_probs=63.7
Q ss_pred CCceEEEcCCeEEEEEEEeccCCCeEEEEeC-CccCC-CCCeEEccc---ceEEEccCCCCCCeEEEEEEEeCCceEEEE
Q psy15127 78 PSDATVLSGSVVEFVCRVGGDPLPTILWRRD-DGKMP-TGRAKILDD---RSLQIENVGPQDEGLYICDVENLVGSISLR 152 (633)
Q Consensus 78 ~~~~~~~~G~~~~L~C~~~~~p~p~i~W~~~-~~~i~-~~~~~~~~~---~~L~i~~v~~~d~G~Y~C~~~n~~g~~s~~ 152 (633)
|..+.+..|+++.|.|.+.+.+.+.+.|+++ +..+. .++...... ..|.|.+++..|+|.|.|.+.+..+.....
T Consensus 1 ~~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~v~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~v~~~~~~~~~~ 80 (86)
T smart00409 1 PPSVTVKEGESVTLSCEVSGSPPPEVTWYKQGGKLLAESGRFSVSRSGSNSTLTISNVTPEDSGTYTCAATNSSGSASST 80 (86)
T ss_pred CCcEEEeCCCeEEEEEEEccCCCCeEEEEECCCEEcCCCCcEEEEEcCCeeEEEEEeeccccCeEEEEEEEcCCCeEEEE
Confidence 3466788999999999998877889999998 77765 333333333 589999999999999999999887776666
Q ss_pred EEEEE
Q psy15127 153 ASLTV 157 (633)
Q Consensus 153 ~~l~V 157 (633)
+.|.|
T Consensus 81 ~~l~V 85 (86)
T smart00409 81 TTLTV 85 (86)
T ss_pred EEEEE
Confidence 76665
No 204
>cd05757 Ig2_IL1R_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins. Ig2_IL1R_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three IG-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta. This group also contains ILIR-like 1 (IL1
Probab=98.87 E-value=1.1e-08 Score=79.58 Aligned_cols=77 Identities=19% Similarity=0.277 Sum_probs=58.6
Q ss_pred EEecCCceEEEEEEEeee-----cCCeeEEEECCEEEEeccCCccceEEEccCceEEEcCCCCCCCeEEEEEEEeCCcee
Q psy15127 250 LIWNHPRVNRLSCFAEGS-----PLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGST 324 (633)
Q Consensus 250 ~~~~~g~~~~l~C~~~g~-----p~~~v~W~~~g~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~ 324 (633)
..+..|.++.|.|...+. |.|.+.|+|++.++... .+ ....++.|.|.++..+|+|.|+|.|.|..+..
T Consensus 5 ~~~~~g~~~~l~Cp~~~~~~~~~~~p~i~Wyk~~~~i~~~-----~~-~~~~~~~L~I~~v~~~DsG~YtC~~~n~~~~~ 78 (92)
T cd05757 5 QILFSTKGGKIVCPDLDDFKNENTLPPVQWYKDCKLLEGD-----RK-RFVKGSKLLIQNVTEEDAGNYTCKLTFTHNGK 78 (92)
T ss_pred EEEeeccCCEEECCChHHccCCCCCCcEEEeECCEECCCC-----cc-EEecCCEEEEeeCChhhCEEEEEEEEecCCCE
Confidence 345677899999987542 56899999999887421 11 22266799999999999999999999998877
Q ss_pred EEEEEEEE
Q psy15127 325 TVRAFLQV 332 (633)
Q Consensus 325 ~~~~~l~v 332 (633)
...+...+
T Consensus 79 ~~~~t~t~ 86 (92)
T cd05757 79 QYNVTRTI 86 (92)
T ss_pred EEEEEEEE
Confidence 65554444
No 205
>cd07690 Ig1_CD4 First immunoglobulin (Ig) domain of CD4. Ig1_CD4; first immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy.
Probab=98.87 E-value=6.2e-09 Score=81.00 Aligned_cols=68 Identities=22% Similarity=0.345 Sum_probs=51.1
Q ss_pred eEEEcCCeEEEEEEEeccCCCeEEEEeCCccC-C--------------CCCeEEc------ccceEEEccCCCCCCeEEE
Q psy15127 81 ATVLSGSVVEFVCRVGGDPLPTILWRRDDGKM-P--------------TGRAKIL------DDRSLQIENVGPQDEGLYI 139 (633)
Q Consensus 81 ~~~~~G~~~~L~C~~~~~p~p~i~W~~~~~~i-~--------------~~~~~~~------~~~~L~i~~v~~~d~G~Y~ 139 (633)
+.+.+|++++|.|.+.+.+.+.|.|+++++.. . .++.... .+..|+|.+++.+|+|.|.
T Consensus 2 v~~~~G~~VtL~C~~s~~~~~~i~W~~~~~k~~~g~~~~l~~~~~~~~~~r~~~~~~~~~~g~~~L~I~~l~~sDsgtY~ 81 (94)
T cd07690 2 VLGKKGDTAELPCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRNLWDQGSFPLIIKNLKIEDSDTYI 81 (94)
T ss_pred eEeeCCCCEEEEEEeCCCCCcEEEEEECCcEEccCcCCEEEEecccccCCCCceecccCCCCeEEEEECCCCHHHCEEEE
Confidence 45789999999999998889999999776322 1 0111111 1246999999999999999
Q ss_pred EEEEeCCce
Q psy15127 140 CDVENLVGS 148 (633)
Q Consensus 140 C~~~n~~g~ 148 (633)
|.+.|..+.
T Consensus 82 C~v~~~~~~ 90 (94)
T cd07690 82 CEVEDKKEE 90 (94)
T ss_pred EEECCccce
Confidence 999887654
No 206
>cd05872 Ig_Sema4B_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4B. Ig_Sema4B_like; Immunoglobulin (Ig)-like domain of Sema4B_like. Sema4B is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4B has extracellular Sema and Ig domains, a transmembrane domain and a short cytoplasmic domain. Sema4B has been shown to preferentially regulate the development of the postsynaptic specialization at the glutamatergic synapses. This cytoplasmic domain includes a PDZ-binding motif upon which the synaptic localization of Sem4B is dependent. Sema4B is a ligand of CLCP1, CLCP1 was identified in an expression profiling analysis, which compared a highly metastic lung cancer subline with its low metastic parental line. Sema4B was shown to promote CLCP1 endocytosis, and their interaction is a potential target for therapeutic intervention of metastasis.
Probab=98.85 E-value=1.6e-08 Score=76.49 Aligned_cols=78 Identities=22% Similarity=0.338 Sum_probs=59.2
Q ss_pred CceEEEcCCeEEEEEEEeccCCCeEEEEeCCccCCCCCeEEcccceEEEccCCCCCCeEEEEEEE-eCCceEEEEEEEEE
Q psy15127 79 SDATVLSGSVVEFVCRVGGDPLPTILWRRDDGKMPTGRAKILDDRSLQIENVGPQDEGLYICDVE-NLVGSISLRASLTV 157 (633)
Q Consensus 79 ~~~~~~~G~~~~L~C~~~~~p~p~i~W~~~~~~i~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~-n~~g~~s~~~~l~V 157 (633)
.++.+.+|+++.|.|...+. .+.+.|++++..+..+.+.......|.|.+++.+|+|.|.|.+. +++........|.|
T Consensus 4 ~~~tv~~g~~v~L~C~~~s~-~A~v~W~~ng~~l~~~~r~~~~~~GLlI~~~~~~dsG~Y~C~s~E~gf~~~~~~y~l~v 82 (85)
T cd05872 4 KNRTVAPGADVVLPCQLRSN-LASPVWLFNGTPLNAQFSYRVGTDGLLILVTSPEHSGTYRCYSEEEGFQQLVASYSLNV 82 (85)
T ss_pred eEEEEecCCCEEEECCCCCC-CccEEEEECCcccCCCcceEEeCCCCEEEECCHhhCEEEEEEEecCCCeEEEEEEEEEE
Confidence 45778999999999998765 66999999999887654455556678899999999999999986 33333334444443
No 207
>PF00047 ig: Immunoglobulin domain The Prosite family only concerns antibodies and MHCs.; InterPro: IPR013151 Members of the immunoglobulin superfamily are found in hundreds of proteins of different functions. Examples include antibodies, the giant muscle kinase titin and receptor tyrosine kinases. Immunoglobulin-like domains may be involved in protein-protein and protein-ligand interactions. The Pfam alignments do not include the first and last strand of the immunoglobulin-like domain.; PDB: 1B6U_A 3O4O_C 3VH8_H 1BIH_A 2C9A_A 2V5Y_A 1BQH_K 2ATP_A 3B9K_A 1NEZ_H ....
Probab=98.85 E-value=7.7e-09 Score=75.23 Aligned_cols=57 Identities=37% Similarity=0.737 Sum_probs=45.4
Q ss_pred CCeEEEEEEE-eccCCCeEEEEeCCccCCCCCeEEcc--cc----eEEEccCCCCCCeEEEEEE
Q psy15127 86 GSVVEFVCRV-GGDPLPTILWRRDDGKMPTGRAKILD--DR----SLQIENVGPQDEGLYICDV 142 (633)
Q Consensus 86 G~~~~L~C~~-~~~p~p~i~W~~~~~~i~~~~~~~~~--~~----~L~i~~v~~~d~G~Y~C~~ 142 (633)
|++++|.|.+ .+.+...++|+|++............ .. .|.|.+++.+|+|.|+|.|
T Consensus 1 G~~v~L~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~v 64 (64)
T PF00047_consen 1 GSSVTLTCSVSSGPPPTTVTWSKNGQSLPEGSTTNRSTNSVSSTSRLTISNVTPEDSGTYTCVV 64 (64)
T ss_dssp TSEEEEEEEEEESSSTSEEEEEETTTTTSEEEEEEEEETTTEEEEEEEESSCTGGGTEEEEEEE
T ss_pred CCeEEEEeecCCCCCCcEEEEEECCccccCcceeEeecccceeeeEEEEccCCHHHCEEEEEEC
Confidence 7899999999 66778899999999877554332221 11 2999999999999999986
No 208
>cd04979 Ig_Semaphorin_C Immunoglobulin (Ig)-like domain of semaphorin. Ig_Semaphorin_C; Immunoglobulin (Ig)-like domain in semaphorins. Semaphorins are transmembrane protein that have important roles in a variety of tissues. Functionally, semaphorins were initially characterized for their importance in the development of the nervous system and in axonal guidance. Later they have been found to be important for the formation and functioning of the cardiovascular, endocrine, gastrointestinal, hepatic, immune, musculoskeletal, renal, reproductive, and respiratory systems. Semaphorins function through binding to their receptors and transmembrane semaphorins also serves as receptors themselves. Although molecular mechanism of semaphorins is poorly understood, the Ig-like domains may involve in ligand binding or dimerization.
Probab=98.84 E-value=3.2e-08 Score=77.39 Aligned_cols=83 Identities=25% Similarity=0.321 Sum_probs=60.4
Q ss_pred eeEEecCCceEEEEEEEeeecCCeeEEEECCEEEEeccCCccceEEEccCceEEEcCCCCCCCeEEEEEEEeCC-ceeEE
Q psy15127 248 SLLIWNHPRVNRLSCFAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVA-GSTTV 326 (633)
Q Consensus 248 ~~~~~~~g~~~~l~C~~~g~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~-g~~~~ 326 (633)
..+.+..|+++.|.|.+.+ |.+.+.|++++..+..... ...+.... ...|.|.++..+|+|.|+|.|.+.. +....
T Consensus 4 ~~~~v~~g~~v~L~C~~~~-p~~~i~W~k~~~~~~~~~~-~~~~~~~~-~~~L~I~~~~~~D~G~Y~C~a~~~~~~~~~~ 80 (89)
T cd04979 4 KVVTVVEGNSVFLECSPKS-NLASVVWLFQGGPLQRKEE-PEERLLVT-EDGLLIRSVSPADAGVYTCQSVEHGFKQTLA 80 (89)
T ss_pred eEEEEECCCcEEEEEeCCC-CCceEEEEECCcccccccC-cCceEEEc-CCCEEEccCCHHHCEEEEEEEecCccceeEe
Confidence 3456678999999999987 8889999999986542111 01233332 3469999999999999999998654 45566
Q ss_pred EEEEEEE
Q psy15127 327 RAFLQVR 333 (633)
Q Consensus 327 ~~~l~v~ 333 (633)
+..|.|.
T Consensus 81 ~~~l~V~ 87 (89)
T cd04979 81 TYSLNVL 87 (89)
T ss_pred EEEEEEe
Confidence 6777665
No 209
>cd05862 Ig1_VEGFR First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R). IG1_VEGFR: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF_A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angioge
Probab=98.80 E-value=2.9e-08 Score=76.60 Aligned_cols=79 Identities=20% Similarity=0.201 Sum_probs=57.4
Q ss_pred CceEEEEEEEeeecC--CeeEEEECCEEEEeccCCccceE----EEccCceEEEcCCCCCCCeEEEEEEEeCCceeEEEE
Q psy15127 255 PRVNRLSCFAEGSPL--PSVFWTQEGSQVLMFPGNAYGHL----HVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRA 328 (633)
Q Consensus 255 g~~~~l~C~~~g~p~--~~v~W~~~g~~~~~~~~~~~~~~----~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~ 328 (633)
|+++.|.|.+.+.+. ..+.|.+++............+. .....+.|.|.+++..|+|.|+|.|.|..|....++
T Consensus 1 Ge~~~L~C~~~~~~~~~~~~~W~~p~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~~~~~DsG~Y~C~a~n~~~~~~~~t 80 (86)
T cd05862 1 GEKLVLNCTARTELNVGIDFQWDYPGKKEQRAKSVSENRRSLQEHTELSSTLTIENVTLSDLGRYTCTASSGQMIAKNST 80 (86)
T ss_pred CCcEEEEEEEEeCCCCcEEEEEEcCCcccccceecccccccccccceeeeEEEEecCCcccCEEEEEEEeecceEecccE
Confidence 678999999988765 47899988764321110010000 111345899999999999999999999999988888
Q ss_pred EEEEE
Q psy15127 329 FLQVR 333 (633)
Q Consensus 329 ~l~v~ 333 (633)
.|.|.
T Consensus 81 ~~~V~ 85 (86)
T cd05862 81 IVIVH 85 (86)
T ss_pred EEEEe
Confidence 88875
No 210
>KOG0196|consensus
Probab=98.77 E-value=2.9e-07 Score=94.93 Aligned_cols=137 Identities=26% Similarity=0.385 Sum_probs=101.3
Q ss_pred CCceEEecccccCCEEEEEEEEcCCccee----EEEEEEeecCCCCCceecCCCCCCCCCCCCCcEEEEeeCCeEEEEeC
Q psy15127 356 DLRRIACDLRETDSGLYTCTASSESGETS----WSASLSVEPRPGPHAVHRMPDSGLFPGPPAAPVILNTTRGSVTLGWG 431 (633)
Q Consensus 356 ~~~~~i~~~~~~d~g~y~c~a~n~~g~~~----~~~~l~v~~~p~~~~~~~~~~~~~~p~~p~~~~~~~~~~~~i~l~W~ 431 (633)
.....+.+|.....|+|...|.|.+..-+ ..+.+.|..... .|++...++....+.+++.|+|.
T Consensus 397 ~~~V~v~~L~ah~~YTFeV~AvNgVS~lsp~~~~~a~vnItt~qa------------~ps~V~~~r~~~~~~~sitlsW~ 464 (996)
T KOG0196|consen 397 ETSVTVSDLLAHTNYTFEVEAVNGVSDLSPFPRQFASVNITTNQA------------APSPVSVLRQVSRTSDSITLSWS 464 (996)
T ss_pred cceEEEeccccccccEEEEEEeecccccCCCCCcceeEEeecccc------------CCCccceEEEeeeccCceEEecC
Confidence 34558899999999999999999775432 223333332211 23444556777888999999999
Q ss_pred CCCCCCCCCcceeEEEEEEEEecCCCCeEEEEEeeeeceEEEecCCCCCeEEEEEEEEeccccCCCCCCCCceeecCC
Q psy15127 432 EPEPRGGGVAPVIGYTVEYFSSDLQTGWVVAAHRITSTSITVSDLKPDTSYMFIVRAENSHGLGIPSPVSPITRTLGL 509 (633)
Q Consensus 432 ~~~~~~~~~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~~~Y~~~v~a~n~~G~g~~s~~~~~~~t~~~ 509 (633)
.|... ++.|..|+|+|+..+... ..........+..+|.+|.|++.|.|+|+|...+|.|++|.... ++|...
T Consensus 465 ~p~~p---ng~ildYEvky~ek~~~e-~~~~~~~t~~~~~ti~gL~p~t~YvfqVRarT~aG~G~~S~~~~-fqT~~~ 537 (996)
T KOG0196|consen 465 EPDQP---NGVILDYEVKYYEKDEDE-RSYSTLKTKTTTATITGLKPGTVYVFQVRARTAAGYGPYSGKHE-FQTLPS 537 (996)
T ss_pred CCCCC---CCcceeEEEEEeeccccc-cceeEEecccceEEeeccCCCcEEEEEEEEecccCCCCCCCcee-eeecCc
Confidence 99865 578999999999886422 22223444567899999999999999999999999999998774 666553
No 211
>cd05753 Ig2_FcgammaR_like Second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins. Ig2_FcgammaR_like: domain similar to the second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.
Probab=98.77 E-value=2.2e-08 Score=76.67 Aligned_cols=64 Identities=17% Similarity=0.223 Sum_probs=52.2
Q ss_pred EecCCceEEEEEEEee-ecCCeeEEEECCEEEEeccCCccceEEEccCceEEEcCCCCCCCeEEEEEEEeCCcee
Q psy15127 251 IWNHPRVNRLSCFAEG-SPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGST 324 (633)
Q Consensus 251 ~~~~g~~~~l~C~~~g-~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~ 324 (633)
.+.+|+.++|.|.+.+ .+.+.+.|+|+|..+.. ......|.|.+++.+|+|.|+|.+.+..|..
T Consensus 10 ~V~~G~~vtL~C~~~~~~~~~~~~w~k~g~~~~~----------~~~~~~l~I~~~~~~dsG~Y~C~~~~~~~~~ 74 (83)
T cd05753 10 VVFEGEPLVLRCHGWKNKPVYKVTYYRDGKAKKY----------SHSNSNLSIPQATLSDSGSYHCSGIIGSYDY 74 (83)
T ss_pred eecCCCCEEEEeeCCCCCcceEEEEEECCeEccc----------cCCCceEEECccCHHHCEEEEEEEEeCCcee
Confidence 5778999999999854 56678999999976531 1134589999999999999999999998754
No 212
>cd05774 Ig_CEACAM_D1 First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM). IG_CEACAM_D1: immunoglobulin (Ig)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the D
Probab=98.76 E-value=5.9e-08 Score=77.28 Aligned_cols=81 Identities=22% Similarity=0.246 Sum_probs=58.4
Q ss_pred eCCCceEEEcCCeEEEEEEEeccCCCeEEEEeCCcc-----C---------------CCCCeEEcccceEEEccCCCCCC
Q psy15127 76 SEPSDATVLSGSVVEFVCRVGGDPLPTILWRRDDGK-----M---------------PTGRAKILDDRSLQIENVGPQDE 135 (633)
Q Consensus 76 ~~~~~~~~~~G~~~~L~C~~~~~p~p~i~W~~~~~~-----i---------------~~~~~~~~~~~~L~i~~v~~~d~ 135 (633)
.++....+.+|+++.|.|.........+.|+|.... + ..+|..+..+++|.|.+++.+|+
T Consensus 3 ie~~p~~~~~G~~V~L~v~~~p~~~~~~~W~kg~~~~~~~~I~~y~~~~~~~~~gp~~~gR~~~~~ngSL~I~~v~~~D~ 82 (105)
T cd05774 3 IELVPPQVAEGENVLLLVHNLPENLLAYAWYKGKTVSPNFLIASYIISTNSSTPGPAYSGRETIYPNGSLLIQNVTQKDT 82 (105)
T ss_pred EeccCCcccCCCCEEEEecCCCCCceEEEEEcCCCCCCCEEEEEEECCCcccccCcccCCcEEEeCCCcEEEecCCcccC
Confidence 445566688999999999754333348999996321 1 13455566778999999999999
Q ss_pred eEEEEEEEeCCc-eEEEEEEEE
Q psy15127 136 GLYICDVENLVG-SISLRASLT 156 (633)
Q Consensus 136 G~Y~C~~~n~~g-~~s~~~~l~ 156 (633)
|.|+|.+.+... .....+.|.
T Consensus 83 G~Y~~~v~~~~~~~~~~~v~l~ 104 (105)
T cd05774 83 GFYTLQTITTNFQVEQATVHLQ 104 (105)
T ss_pred EEEEEEEEeCCccEEEEEEEEE
Confidence 999999998763 345555554
No 213
>smart00408 IGc2 Immunoglobulin C-2 Type.
Probab=98.76 E-value=3.8e-08 Score=71.19 Aligned_cols=63 Identities=32% Similarity=0.578 Sum_probs=51.5
Q ss_pred CCceEEEEEEEeeecCCeeEEEECCEEEEeccCCccceEEEccCceEEEcCCCCCCCeEEEEEEEeCCc
Q psy15127 254 HPRVNRLSCFAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAG 322 (633)
Q Consensus 254 ~g~~~~l~C~~~g~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g 322 (633)
+|+++.|.|.+.+.|.+.+.|++++..+. ...........|.|.++..+|.|.|+|.+.|..|
T Consensus 1 ~g~~~~l~C~~~~~~~~~v~W~~~~~~~~------~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~n~~g 63 (63)
T smart00408 1 EGQSVTLTCPAEGDPVPNITWLKDGKPLP------ESNRLSASGSTLTIKSVSLEDSGEYTCVAENSAG 63 (63)
T ss_pred CCceEEEEeeCccCCCCeEEEEECCEECC------CCCEEecCCcEEEEeeCCcccCEEEEEEEecCCC
Confidence 46889999999999999999999988764 1222334556899999999999999999998765
No 214
>cd05885 Ig2_Necl-4 Second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4)). Ig2_Necl-4: second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1-Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Ig domains are likely to participate in ligand binding and recognition. Necl-4 is expressed on Schwann cells, and plays a key part in initiating peripheral nervous system (PNS) myelination. In injured peripheral nerve cells, the mRNA signal for both Necl-4 and Necl-5 was observed to be elevated. Necl-4 participates in cell-cell adhesion and is proposed to play a role in tumor suppression.
Probab=98.76 E-value=4.3e-08 Score=73.08 Aligned_cols=60 Identities=17% Similarity=0.313 Sum_probs=48.1
Q ss_pred EEEEEEEe-ccCCCeEEEEeCCccCCCCC------eEEcccceEEEccCCCCCCeEEEEEEEeCCce
Q psy15127 89 VEFVCRVG-GDPLPTILWRRDDGKMPTGR------AKILDDRSLQIENVGPQDEGLYICDVENLVGS 148 (633)
Q Consensus 89 ~~L~C~~~-~~p~p~i~W~~~~~~i~~~~------~~~~~~~~L~i~~v~~~d~G~Y~C~~~n~~g~ 148 (633)
+.|.|... +.|.+.|+|||++.+|.... ......+.|.|.....+|.+.|+|+|.|..+.
T Consensus 2 ~~L~C~s~~skP~a~i~W~k~~~~l~~~~~~~~~~~~~t~~s~L~~~~~~~Ddg~~~~C~A~n~a~~ 68 (80)
T cd05885 2 VELTCLSPRSKPAATLRWYRDRKELKGVISQQENGKTVSVSNTIRFPVDRKDDGAILSCEASHPALV 68 (80)
T ss_pred EEEEEeCCCccCCCeEEEEECCEECCCCcccccCCceEEEEEEEEEEeeeccCCcEEEEEEEChhhC
Confidence 68999985 68999999999999985421 11122357999999999999999999998765
No 215
>cd05860 Ig4_SCFR Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR). Ig4_SCFR: The fourth Immunoglobulin (Ig)-like domain in stem cell factor receptor (SCFR). SCFR is organized as an extracellular component having five IG-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR. This fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth domain abolishes the ligand-induced dimerization of SCFR and completely inhibits signal transduction.
Probab=98.75 E-value=1.1e-07 Score=73.75 Aligned_cols=80 Identities=18% Similarity=0.233 Sum_probs=65.7
Q ss_pred CceEEEcCCeEEEEEEEeccCCCe-EEEEeCCccCCCC---CeEEcc------cceEEEccCCCCCCeEEEEEEEeCCce
Q psy15127 79 SDATVLSGSVVEFVCRVGGDPLPT-ILWRRDDGKMPTG---RAKILD------DRSLQIENVGPQDEGLYICDVENLVGS 148 (633)
Q Consensus 79 ~~~~~~~G~~~~L~C~~~~~p~p~-i~W~~~~~~i~~~---~~~~~~------~~~L~i~~v~~~d~G~Y~C~~~n~~g~ 148 (633)
..+.+.+|+.+.|.|.+.+.|+|. +.|.+++..+... ...... .+.|.|..+..+|+|.|+|.|.|....
T Consensus 11 ~~~~v~~gE~~~L~V~ieAYP~p~~~~W~~~~~~l~~~~~~~~~~~~~~~~rY~S~L~L~Rlk~~E~G~YTf~a~N~~~~ 90 (101)
T cd05860 11 TTIFVNAGENLDLIVEYEAYPKPEHQQWIYMNRTLTNTSDHYVKSRNESNNRYVSELHLTRLKGTEGGTYTFLVSNSDAS 90 (101)
T ss_pred ceEEEECCCCEEEEEEEEeCCCCeeeEEEcCCcccCccccceeEEeccCceEEEEEEEEeecChhhCcEEEEEEECCCCe
Confidence 356799999999999999999997 9999998865322 111111 157999999999999999999999999
Q ss_pred EEEEEEEEEE
Q psy15127 149 ISLRASLTVH 158 (633)
Q Consensus 149 ~s~~~~l~V~ 158 (633)
.+..+.|.|.
T Consensus 91 ~s~tF~l~v~ 100 (101)
T cd05860 91 ASVTFNVYVN 100 (101)
T ss_pred EEEEEEEEEe
Confidence 9999988875
No 216
>cd05871 Ig_Semaphorin_classIII Immunoglobulin (Ig)-like domain of class III semaphorin. Ig_Semaphorin_class III; Immunoglobulin (Ig)-like domain of class III semaphorins. Semaphorins are classified into various classes on the basis of structural features additional to the Sema domain. Class III semaphorins are a vertebrate class having a Sema domain, an Ig domain, a short basic domain, and are secreted. They have been shown to be axonal guidance cues and have a part in the regulation of the cardiovascular, immune and respiratory systems. Sema3A, the prototype member of this class III subfamily, induces growth cone collapse and is an inhibitor of axonal sprouting. In perinatal rat cortex as a chemoattractant, it functions to direct, for pyramidal neurons, the orientated extension of apical dendrites. It may play a role, prior to the development of apical dendrites, in signaling the radial migration of newborn cortical neurons towards the upper layers. Sema3A selectively inhibits vascula
Probab=98.74 E-value=8e-08 Score=74.85 Aligned_cols=83 Identities=25% Similarity=0.319 Sum_probs=58.2
Q ss_pred eEEecCCceEEEEEEEeeecCCeeEEEECCE--EEEeccCCccceEEEccCceEEEcCCCCCCCeEEEEEEE-eCCceeE
Q psy15127 249 LLIWNHPRVNRLSCFAEGSPLPSVFWTQEGS--QVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSAL-SVAGSTT 325 (633)
Q Consensus 249 ~~~~~~g~~~~l~C~~~g~p~~~v~W~~~g~--~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~-n~~g~~~ 325 (633)
.+...+|+.+.|.|.. +.|.+.+.|++.+. ...... ....+... ..+.|.|.++..+|+|.|+|.|. |..+...
T Consensus 5 ~~~~~eG~~v~L~C~~-~~p~p~v~Wykq~~g~~~~~~~-~~~~r~~~-~~~~L~I~~~~~~DsG~Y~C~a~~~~~~~~~ 81 (91)
T cd05871 5 VVYGVENNSTFLECLP-KSPQASVKWLFQRGGDQRKEEV-KTEERLIH-TERGLLLRSLQRSDAGVYTCTAVEHSFSQTL 81 (91)
T ss_pred EEEEecCCcEEEEEEC-CCCCceEEEEEECCCCCccccc-cccccEEE-ecCeEEEeeCChhHCEEEEEEEEccCCeEEE
Confidence 3456678999999996 58889999998432 211000 01123333 34579999999999999999997 5777677
Q ss_pred EEEEEEEEe
Q psy15127 326 VRAFLQVRE 334 (633)
Q Consensus 326 ~~~~l~v~~ 334 (633)
..+.|.|..
T Consensus 82 ~~~~l~v~~ 90 (91)
T cd05871 82 AKYTLHVIE 90 (91)
T ss_pred EEEEEEEec
Confidence 777777753
No 217
>cd05727 Ig2_Contactin-2-like Second Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins. Ig2_Contactin-2-like: second Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.
Probab=98.72 E-value=2.9e-08 Score=76.94 Aligned_cols=74 Identities=18% Similarity=0.139 Sum_probs=57.6
Q ss_pred eEEecCCceEEEEEEE-eeecCCeeEEEECCEEEEeccCCccceEEEccCceEEEcCCCCCCCeEEEEEEEeCCcee
Q psy15127 249 LLIWNHPRVNRLSCFA-EGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGST 324 (633)
Q Consensus 249 ~~~~~~g~~~~l~C~~-~g~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~ 324 (633)
...+.+|+.+.|.|.. .|.|.+.+.|++++..+... ....++....+|.|.|.+++..|+|.|+|.|.|.....
T Consensus 12 ~~~v~eG~~~~L~C~pP~g~P~p~~~W~k~~~~~~~~--~d~r~~~~~~~G~L~fs~v~~~D~g~Y~C~A~n~~~~~ 86 (96)
T cd05727 12 EVKVKEGWGVVLFCDPPPHYPDLSYRWLLNEFPNFIP--EDGRRFVSQTNGNLYIAKVEASDRGNYSCFVSSPSSTK 86 (96)
T ss_pred ceeeeeCCcEEEeeCCCCCCCCCEEEEEECCcccccc--cCCCeEEeCCCCcEEEeecCHhhCceeEEEEEecccCC
Confidence 3556779999999976 78899999999998754321 12234444458999999999999999999999986544
No 218
>cd05845 Ig2_L1-CAM_like Second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins. Ig2_L1-CAM_like: domain similar to the second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.
Probab=98.72 E-value=3.8e-08 Score=76.12 Aligned_cols=73 Identities=14% Similarity=0.226 Sum_probs=61.4
Q ss_pred ceeEEecCCceEEEEEE-EeeecCCeeEEEECCEEEEeccCCccceEEEccCceEEEcCCCCCCCe-EEEEEEEeCCce
Q psy15127 247 ASLLIWNHPRVNRLSCF-AEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAG-FFVCSALSVAGS 323 (633)
Q Consensus 247 ~~~~~~~~g~~~~l~C~-~~g~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G-~Y~C~a~n~~g~ 323 (633)
...+.+.+|+.+.|.|. ..|.|.|.+.|.+++.... ....|+.+..+|.|.|.++...|.| .|.|.|.|....
T Consensus 10 ~~~v~V~eG~~~~L~C~pP~g~P~P~i~W~~~~~~~i----~~~~Ri~~~~~GnL~fs~v~~~D~g~~Y~C~a~~~~~~ 84 (95)
T cd05845 10 IRPVEVEEGDSVVLPCNPPKSAVPLRIYWMNSDLLHI----TQDERVSMGQNGNLYFANVEEQDSHPDYICHAHFPGLR 84 (95)
T ss_pred cceeEEecCCCEEEEecCCCCCCCCEEEEECCCCccc----cccccEEECCCceEEEEEEehhhCCCCeEEEEEccccc
Confidence 45577889999999997 6999999999998775532 1347888888999999999999999 899999997643
No 219
>cd05717 Ig1_Necl-1-3_like First (N-terminal) immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-3 (also known as cell adhesion molecules CADM3, CADM1, and CADM2 respectively). Ig1_Necl-1-3_like: N-terminal immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), and Necl-3 (CADM2). At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1, Necl-2, and Necl-3 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the form
Probab=98.70 E-value=1.6e-07 Score=74.47 Aligned_cols=84 Identities=19% Similarity=0.305 Sum_probs=57.5
Q ss_pred ceeEEecCCceEEEEEEEeeecCCeeEEEECCEEEEeccC---CccceEEEc----cCceEEEcCCCCCCCeEEEEEEEe
Q psy15127 247 ASLLIWNHPRVNRLSCFAEGSPLPSVFWTQEGSQVLMFPG---NAYGHLHVT----QEGTLRIQGVQKEDAGFFVCSALS 319 (633)
Q Consensus 247 ~~~~~~~~g~~~~l~C~~~g~p~~~v~W~~~g~~~~~~~~---~~~~~~~~~----~~~~l~i~~~~~~d~G~Y~C~a~n 319 (633)
...+.+..|++++|.|.+.+.+.+.+.|++.+..+..... ....++... ....|.|.+++.+|+|.|+|.+.+
T Consensus 4 ~~~~~v~~G~~v~L~C~~~~~~~~~v~W~~p~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~ 83 (95)
T cd05717 4 TQDVTVVEGGTATLKCRVKNNDNSSLQWSNPNQQTLYFNDKRALRDNRIQLVNFSANELSISISNVSLSDEGRYTCSLYT 83 (95)
T ss_pred CCcEEEcCCCCEEEEEEECCCCCceEEEeCCCCcEEEeccccccccCcEEEEcCCCCeeEEEEccCCcccCEEEEEEEec
Confidence 3456678899999999999988899999864432211110 112344331 234799999999999999999987
Q ss_pred CCceeEEEEEEE
Q psy15127 320 VAGSTTVRAFLQ 331 (633)
Q Consensus 320 ~~g~~~~~~~l~ 331 (633)
... .+..+.|.
T Consensus 84 ~~~-~~~~~~~~ 94 (95)
T cd05717 84 MPV-QTAKATVT 94 (95)
T ss_pred CCC-ceEEEEEE
Confidence 653 35555554
No 220
>cd05885 Ig2_Necl-4 Second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4)). Ig2_Necl-4: second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1-Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Ig domains are likely to participate in ligand binding and recognition. Necl-4 is expressed on Schwann cells, and plays a key part in initiating peripheral nervous system (PNS) myelination. In injured peripheral nerve cells, the mRNA signal for both Necl-4 and Necl-5 was observed to be elevated. Necl-4 participates in cell-cell adhesion and is proposed to play a role in tumor suppression.
Probab=98.68 E-value=7.5e-08 Score=71.76 Aligned_cols=67 Identities=18% Similarity=0.320 Sum_probs=49.1
Q ss_pred EEEEEEE-eeecCCeeEEEECCEEEEeccCCccceEEEccCceEEEcCCCCCCCeEEEEEEEeCCcee
Q psy15127 258 NRLSCFA-EGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGST 324 (633)
Q Consensus 258 ~~l~C~~-~g~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~ 324 (633)
++|+|.+ .|+|++++.|+++++++................+.|.|.....+|++.|+|+|.|..+..
T Consensus 2 ~~L~C~s~~skP~a~i~W~k~~~~l~~~~~~~~~~~~~t~~s~L~~~~~~~Ddg~~~~C~A~n~a~~~ 69 (80)
T cd05885 2 VELTCLSPRSKPAATLRWYRDRKELKGVISQQENGKTVSVSNTIRFPVDRKDDGAILSCEASHPALVS 69 (80)
T ss_pred EEEEEeCCCccCCCeEEEEECCEECCCCcccccCCceEEEEEEEEEEeeeccCCcEEEEEEEChhhCC
Confidence 6899998 467889999999999885321111111122234579999999999999999999988654
No 221
>cd05751 Ig1_LILRB1_like First immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1) and similar proteins. Ig1_LILRB1_like: domain similar to the first immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1). This group includes, LILRA5 (LIR9), an activating natural cytotoxicity receptor NKp46, and the immune-type receptor glycoprotein VI (GPVI). LILRs are a family of immunoreceptors expressed on expressed on T and B cells, on monocytes, dendritic cells, and subgroups of natural killer (NK) cells. The human LILR family contains nine proteins (LILRA1-3,and 5, and LILRB1-5). From functional assays, and as the cytoplasmic domains of various LILRs, for example LILRB1 (LIR-1), LILRB2 (LIR-2), and LILRB3 (LIR-3) contain immunoreceptor tyrosine-based inhibitory motifs (ITIMs) it is thought that LIR proteins are inhibitory receptors. Of the eight LIR family proteins, only LIR-1(LILRB1), and LIR-2 (LILRB2),
Probab=98.67 E-value=7.5e-08 Score=75.35 Aligned_cols=73 Identities=19% Similarity=0.240 Sum_probs=56.2
Q ss_pred CCeeeeCCCceEEEcCCeEEEEEEEeccCCCeEEEEeCCccCCCCCe-EEcccceEEEccCCCCCCeEEEEEEEeC
Q psy15127 71 KPFPISEPSDATVLSGSVVEFVCRVGGDPLPTILWRRDDGKMPTGRA-KILDDRSLQIENVGPQDEGLYICDVENL 145 (633)
Q Consensus 71 ~p~~~~~~~~~~~~~G~~~~L~C~~~~~p~p~i~W~~~~~~i~~~~~-~~~~~~~L~i~~v~~~d~G~Y~C~~~n~ 145 (633)
+|.+...|.. .+.+|++++|.|... .+...+.|+|+|........ .......|.|.+|+.+|+|.|+|.+.+.
T Consensus 2 kP~L~a~p~~-vV~~G~~VtL~C~~~-~~~~~f~l~k~g~~~~~~~~~~~~~~~~f~i~~v~~~~~G~Y~C~~~~~ 75 (91)
T cd05751 2 KPSLWAEPSS-VVPLGKPVTLRCQGP-YGAVEYRLYREGSTFAVKKPPEPQNKAKFFIPSMKREHAGRYRCYYRSG 75 (91)
T ss_pred CCEEEecCCC-ccCCCCcEEEEEecC-CCCCEEEEEECCCCccccccCCCceeEEEEccCCChhHCEEEEEEEECC
Confidence 5777777754 689999999999875 56778999999886543211 1112357999999999999999999875
No 222
>cd05881 Ig1_Necl-2 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Ig1_Necl-2: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-2, Necl-2 (also known as cell adhesion molecule 1 (CADM1), SynCAM1, IGSF4A, Tslc1, sgIGSF, and RA175). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-2 is expressed in a wide variety of tissues, and is a
Probab=98.64 E-value=3.5e-07 Score=71.16 Aligned_cols=67 Identities=25% Similarity=0.462 Sum_probs=51.4
Q ss_pred CceEEEcCCeEEEEEEEeccCCCeEEEEeCCcc---------CCCCCeEEcc----cceEEEccCCCCCCeEEEEEEEeC
Q psy15127 79 SDATVLSGSVVEFVCRVGGDPLPTILWRRDDGK---------MPTGRAKILD----DRSLQIENVGPQDEGLYICDVENL 145 (633)
Q Consensus 79 ~~~~~~~G~~~~L~C~~~~~p~p~i~W~~~~~~---------i~~~~~~~~~----~~~L~i~~v~~~d~G~Y~C~~~n~ 145 (633)
+++.+.+|++++|.|.+.+.....++|++.+.. ..+.|+.... ..+|+|.+++.+|+|.|.|.+...
T Consensus 5 ~nvtv~~G~ta~L~C~v~~~~~~~v~w~~~~~~~i~~~~~~~~~d~Rf~~~~~~~~~~tL~I~~vq~~D~G~Y~Cqv~t~ 84 (95)
T cd05881 5 EDVTVVEGEVAIISCRVKNNDDSVIQLLNPNRQTIYFRDVRPLKDSRFQLVNFSSNELRVSLSNVSLSDEGRYFCQLYTD 84 (95)
T ss_pred CceEEcCCCcEEEEEEEccCCccEEEEEecCCcEEEecCccccCCcCEEEEeCCCCEEEEEECcCCcccCEEEEEEEEcc
Confidence 467899999999999998776667888876643 2234444332 236999999999999999999753
No 223
>PF13927 Ig_3: Immunoglobulin domain; PDB: 2D3V_A 1G0X_A 1VDG_A 1P7Q_D 3D2U_H 1UFU_A 1UGN_A 3VH8_H 3OQ3_B 4DKD_C ....
Probab=98.59 E-value=5.2e-08 Score=73.49 Aligned_cols=72 Identities=32% Similarity=0.565 Sum_probs=51.5
Q ss_pred CCeeeeCCCceEEEcCCeEEEEEEEeccC-CCeEEEEeCCccC--CCCCeEEcccceEEEccCCCCCCeEEEEEEEe
Q psy15127 71 KPFPISEPSDATVLSGSVVEFVCRVGGDP-LPTILWRRDDGKM--PTGRAKILDDRSLQIENVGPQDEGLYICDVEN 144 (633)
Q Consensus 71 ~p~~~~~~~~~~~~~G~~~~L~C~~~~~p-~p~i~W~~~~~~i--~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~n 144 (633)
+|.|...+.......+. ++|.|.+.+.+ .+.++|+ +.... ..........+.|.|.++..+|.|.|+|.|.|
T Consensus 1 kP~I~~~~~~~~~~~~~-~~l~C~~~~~~~~~~~~W~-~~~~~~~~~~~~~~~~~~~L~i~~v~~~~~g~y~C~a~N 75 (75)
T PF13927_consen 1 KPQISVPPPPVVTSGGS-VTLTCSAEGGPPPPSISWY-DSNPSFNSNSRGSSSSNSTLTISNVTRSDNGTYTCIASN 75 (75)
T ss_dssp ESEEEEESTSEEETTEE-EEEEEEESSEESSEEEEEE-TEEEEEEEEEEEEEEEEEEEEESSCCGGGTEEEEEEEEE
T ss_pred CCEEEEcCCCcEeecee-EEEEEEEccccCCeEEEEE-ecCCceeeeeeeccceeeEEEEccCCHHhCcEEEEEEEC
Confidence 57777777776554444 99999998876 7789999 11111 11122223356899999999999999999986
No 224
>PF13895 Ig_2: Immunoglobulin domain; PDB: 2V5R_B 2V5M_A 2V5S_B 2GI7_A 3LAF_A 4DEP_C 3O4O_B 2EC8_A 2E9W_A 1J87_A ....
Probab=98.57 E-value=5.6e-07 Score=68.76 Aligned_cols=71 Identities=28% Similarity=0.465 Sum_probs=55.4
Q ss_pred EEecCCceEEEEEEEeeecCCeeEEEECCEEEEeccCCccceEEEccCceEEEcCCCCCCCeEEEEEEEeCCc-eeEEEE
Q psy15127 250 LIWNHPRVNRLSCFAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAG-STTVRA 328 (633)
Q Consensus 250 ~~~~~g~~~~l~C~~~g~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g-~~~~~~ 328 (633)
..+..|+.++|.|.+.+.|.+.+.|++++..+.. ....+.+..+..+|.|.|+|.+.+..+ ..+..+
T Consensus 9 ~~v~~g~~~~l~C~~~~~p~~~~~w~~~~~~~~~------------~~~~~~~~~~~~~~~g~y~C~~~~~~~~~~s~~~ 76 (80)
T PF13895_consen 9 QSVEEGDSVTLTCSVSGNPPPQVQWYKNGSPINS------------SQNGLFIPNVSPEDSGNYTCRASNGSGSNTSTSV 76 (80)
T ss_dssp SEEETTSEEEEEEEEESSSSSEEEEEETTEEEEE------------ESSEEEESSEEGGGTEEEEEEEEETTEEEEEEEE
T ss_pred eEEeCCCcEEEEEEEEcccceeeeeeeeeeeeee------------eeeeeeeeeeccccCEEEEEEEEeCCCCeEeeeE
Confidence 3467799999999999999999999999977641 111277888999999999999999664 345555
Q ss_pred EEEE
Q psy15127 329 FLQV 332 (633)
Q Consensus 329 ~l~v 332 (633)
.|.|
T Consensus 77 ~v~V 80 (80)
T PF13895_consen 77 NVTV 80 (80)
T ss_dssp EEEE
T ss_pred EeeC
Confidence 5543
No 225
>cd05860 Ig4_SCFR Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR). Ig4_SCFR: The fourth Immunoglobulin (Ig)-like domain in stem cell factor receptor (SCFR). SCFR is organized as an extracellular component having five IG-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR. This fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth domain abolishes the ligand-induced dimerization of SCFR and completely inhibits signal transduction.
Probab=98.57 E-value=7.4e-07 Score=69.09 Aligned_cols=85 Identities=14% Similarity=0.133 Sum_probs=65.9
Q ss_pred eeEEecCCceEEEEEEEeeecCCe-eEEEECCEEEEeccCCccceEEEc----cCceEEEcCCCCCCCeEEEEEEEeCCc
Q psy15127 248 SLLIWNHPRVNRLSCFAEGSPLPS-VFWTQEGSQVLMFPGNAYGHLHVT----QEGTLRIQGVQKEDAGFFVCSALSVAG 322 (633)
Q Consensus 248 ~~~~~~~g~~~~l~C~~~g~p~~~-v~W~~~g~~~~~~~~~~~~~~~~~----~~~~l~i~~~~~~d~G~Y~C~a~n~~g 322 (633)
..+.+..|+++.|.|.+.++|+|+ +.|.+++..+...... ....... -.+.|.+..+..+|.|.|+|.|.|..+
T Consensus 11 ~~~~v~~gE~~~L~V~ieAYP~p~~~~W~~~~~~l~~~~~~-~~~~~~~~~~rY~S~L~L~Rlk~~E~G~YTf~a~N~~~ 89 (101)
T cd05860 11 TTIFVNAGENLDLIVEYEAYPKPEHQQWIYMNRTLTNTSDH-YVKSRNESNNRYVSELHLTRLKGTEGGTYTFLVSNSDA 89 (101)
T ss_pred ceEEEECCCCEEEEEEEEeCCCCeeeEEEcCCcccCccccc-eeEEeccCceEEEEEEEEeecChhhCcEEEEEEECCCC
Confidence 456788999999999999999997 9999998765432221 1111111 124799999999999999999999999
Q ss_pred eeEEEEEEEEE
Q psy15127 323 STTVRAFLQVR 333 (633)
Q Consensus 323 ~~~~~~~l~v~ 333 (633)
..+.++.|.|.
T Consensus 90 ~~s~tF~l~v~ 100 (101)
T cd05860 90 SASVTFNVYVN 100 (101)
T ss_pred eEEEEEEEEEe
Confidence 99999888875
No 226
>PHA03376 BARF1; Provisional
Probab=98.56 E-value=5.5e-07 Score=76.31 Aligned_cols=112 Identities=18% Similarity=0.283 Sum_probs=73.1
Q ss_pred ceEEEcCCeEEEEEEEe---ccCCCeEEEEeCCc---cC-----C--------C--CCeEE---cccceEEEccCCCCCC
Q psy15127 80 DATVLSGSVVEFVCRVG---GDPLPTILWRRDDG---KM-----P--------T--GRAKI---LDDRSLQIENVGPQDE 135 (633)
Q Consensus 80 ~~~~~~G~~~~L~C~~~---~~p~p~i~W~~~~~---~i-----~--------~--~~~~~---~~~~~L~i~~v~~~d~ 135 (633)
.+.+..||.+.|.|.-. ..+...|.|+|.+. .+ . . ++..+ ..+-+|.|.+++.+|.
T Consensus 20 pVta~VGEda~LsC~lnp~ssa~~MrIrWqKs~p~~~~VvL~~~ggdVv~~QmEyRGrtD~~~~~gnvsLvI~~l~lSDd 99 (221)
T PHA03376 20 AVTAFLGERVTLTSYWRRVSLGPEIEVSWFKLGPGEEQVLIGRMHHDVIFIEWPFRGFFDIHRSANTFFLVVTAANISHD 99 (221)
T ss_pred chhheeCCcEEEEecccCccCCCceEEEEEecCCCCCCEEEEEcCCeeeeeeeccccEEEEEecCCeEEEEEEeeeecCC
Confidence 45678899999999875 12344799999532 11 0 0 11112 1234799999999999
Q ss_pred eEEEEEEEeCCceEEEEEE--------EEEEeeccccccCCCceEEecCCcEEEEEeCCCCCCCCeEEEEECCE
Q psy15127 136 GLYICDVENLVGSISLRAS--------LTVHLLRDDFRAEPKDTRVASGETALLECGPPKGQPEPTLHWKKNGQ 201 (633)
Q Consensus 136 G~Y~C~~~n~~g~~s~~~~--------l~V~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~i~W~~~~~ 201 (633)
|.|+|.++......-+.-. |.|......|.. -+...+.|. +.|.|.|.+.|..+..
T Consensus 100 GtY~C~fQkge~~~~k~ehLt~V~~~~Lsv~a~~~dFp~---------~~~~~i~C~-sggfP~P~~~Wle~~~ 163 (221)
T PHA03376 100 GNYLCRMKLGETEVTKQEHLSVVKPLTLSVHSERSQFPD---------FSVLTVTCT-VNAFPHPHVQWLMPEG 163 (221)
T ss_pred ceEEEEEEcCCCceeeeeeeeeeecceEEEEeccccCCC---------CCeeEEEEe-cCCcCCchheeccccC
Confidence 9999999865433322222 344432112221 456789999 8999999999997644
No 227
>cd05741 Ig_CEACAM_D1_like First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) and similar proteins. Ig_CEACAM_D1_like : immunoglobulin (IG)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily-like. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surf
Probab=98.55 E-value=4e-07 Score=71.75 Aligned_cols=71 Identities=25% Similarity=0.362 Sum_probs=51.9
Q ss_pred CCeEEEEEEEeccCCCeEEEEeCCccCC-------------------CCCeEEcccceEEEccCCCCCCeEEEEEEEeCC
Q psy15127 86 GSVVEFVCRVGGDPLPTILWRRDDGKMP-------------------TGRAKILDDRSLQIENVGPQDEGLYICDVENLV 146 (633)
Q Consensus 86 G~~~~L~C~~~~~p~p~i~W~~~~~~i~-------------------~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~n~~ 146 (633)
|++|+|.|.........|.|+|+..... .++.....+++|.|.+++.+|+|.|+|.+....
T Consensus 1 G~~VtL~c~~~~~~~~~i~W~~~~~~~~~~~i~~~~~~~~~~~~~~~~~R~~~~~~~sL~I~~l~~~DsG~Y~c~v~~~~ 80 (92)
T cd05741 1 GESVTLPVSNLPENLQEITWYKGKDKSVEAEIASYIATNSTVFGPAYSGRETIYPNGSLLIQNLTKEDSGTYTLQIISTN 80 (92)
T ss_pred CCcEEEEcccCCCCCEEEEEECCCCCCcceEEEEEecCCceeECCCcCCeEEEcCCceEEEccCCchhcEEEEEEEEcCC
Confidence 7899999988765556899999764321 123334456789999999999999999998765
Q ss_pred ce-EEEEEEEE
Q psy15127 147 GS-ISLRASLT 156 (633)
Q Consensus 147 g~-~s~~~~l~ 156 (633)
+. ....+.|.
T Consensus 81 ~~~~~~~~~l~ 91 (92)
T cd05741 81 GVTENAKFFLR 91 (92)
T ss_pred CcEEEEEEEEE
Confidence 43 45555444
No 228
>cd07690 Ig1_CD4 First immunoglobulin (Ig) domain of CD4. Ig1_CD4; first immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy.
Probab=98.54 E-value=2.9e-07 Score=71.70 Aligned_cols=75 Identities=13% Similarity=0.239 Sum_probs=52.1
Q ss_pred EEecCCceEEEEEEEeeecCCeeEEEECCEEEEec---------cCCccceEEE------ccCceEEEcCCCCCCCeEEE
Q psy15127 250 LIWNHPRVNRLSCFAEGSPLPSVFWTQEGSQVLMF---------PGNAYGHLHV------TQEGTLRIQGVQKEDAGFFV 314 (633)
Q Consensus 250 ~~~~~g~~~~l~C~~~g~p~~~v~W~~~g~~~~~~---------~~~~~~~~~~------~~~~~l~i~~~~~~d~G~Y~ 314 (633)
+....|++++|.|.+.+.+.+.+.|++++...... ......++.. ....+|+|.++..+|+|.|.
T Consensus 2 v~~~~G~~VtL~C~~s~~~~~~i~W~~~~~k~~~g~~~~l~~~~~~~~~~r~~~~~~~~~~g~~~L~I~~l~~sDsgtY~ 81 (94)
T cd07690 2 VLGKKGDTAELPCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRNLWDQGSFPLIIKNLKIEDSDTYI 81 (94)
T ss_pred eEeeCCCCEEEEEEeCCCCCcEEEEEECCcEEccCcCCEEEEecccccCCCCceecccCCCCeEEEEECCCCHHHCEEEE
Confidence 34567899999999999999999999776332100 0001111111 11236999999999999999
Q ss_pred EEEEeCCcee
Q psy15127 315 CSALSVAGST 324 (633)
Q Consensus 315 C~a~n~~g~~ 324 (633)
|.+.|..+..
T Consensus 82 C~v~~~~~~~ 91 (94)
T cd07690 82 CEVEDKKEEV 91 (94)
T ss_pred EEECCccceE
Confidence 9999876653
No 229
>PF00047 ig: Immunoglobulin domain The Prosite family only concerns antibodies and MHCs.; InterPro: IPR013151 Members of the immunoglobulin superfamily are found in hundreds of proteins of different functions. Examples include antibodies, the giant muscle kinase titin and receptor tyrosine kinases. Immunoglobulin-like domains may be involved in protein-protein and protein-ligand interactions. The Pfam alignments do not include the first and last strand of the immunoglobulin-like domain.; PDB: 1B6U_A 3O4O_C 3VH8_H 1BIH_A 2C9A_A 2V5Y_A 1BQH_K 2ATP_A 3B9K_A 1NEZ_H ....
Probab=98.54 E-value=1.5e-07 Score=68.34 Aligned_cols=58 Identities=24% Similarity=0.457 Sum_probs=42.5
Q ss_pred CceEEEEEEE-eeecCCeeEEEECCEEEEeccCCccceEEEc-cCc----eEEEcCCCCCCCeEEEEEE
Q psy15127 255 PRVNRLSCFA-EGSPLPSVFWTQEGSQVLMFPGNAYGHLHVT-QEG----TLRIQGVQKEDAGFFVCSA 317 (633)
Q Consensus 255 g~~~~l~C~~-~g~p~~~v~W~~~g~~~~~~~~~~~~~~~~~-~~~----~l~i~~~~~~d~G~Y~C~a 317 (633)
|++++|.|.+ .+.++..+.|++++...... ...... ... .|.|.+++.+|+|.|+|.|
T Consensus 1 G~~v~L~C~~~~~~~~~~~~W~~~~~~~~~~-----~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~v 64 (64)
T PF00047_consen 1 GSSVTLTCSVSSGPPPTTVTWSKNGQSLPEG-----STTNRSTNSVSSTSRLTISNVTPEDSGTYTCVV 64 (64)
T ss_dssp TSEEEEEEEEEESSSTSEEEEEETTTTTSEE-----EEEEEEETTTEEEEEEEESSCTGGGTEEEEEEE
T ss_pred CCeEEEEeecCCCCCCcEEEEEECCccccCc-----ceeEeecccceeeeEEEEccCCHHHCEEEEEEC
Confidence 6899999999 66777899999998643211 111111 111 2999999999999999986
No 230
>cd05897 Ig2_IL1R2_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2). Ig2_IL1R2_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds the type II (IL1R2) represented in this group. Mature IL1R2 consists of three IG-like domains, a transmembrane domain, and a short cytoplasmic domain. It lacks the large cytoplasmic domain of Mature IL1R1, and does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta.
Probab=98.53 E-value=4e-07 Score=70.73 Aligned_cols=70 Identities=14% Similarity=0.206 Sum_probs=51.4
Q ss_pred EecCCceEEEEEEE-ee----ecCCeeEEEECCEEEEeccCCccceEEE-ccCceEEEcCCCCCCCeEEEEEEEeCCcee
Q psy15127 251 IWNHPRVNRLSCFA-EG----SPLPSVFWTQEGSQVLMFPGNAYGHLHV-TQEGTLRIQGVQKEDAGFFVCSALSVAGST 324 (633)
Q Consensus 251 ~~~~g~~~~l~C~~-~g----~p~~~v~W~~~g~~~~~~~~~~~~~~~~-~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~ 324 (633)
.+..|.+..|.|.- .+ ++.+.++|+||+.++... ..+... .....|.|.++..+|+|.|+|.+.+..|..
T Consensus 6 ~~~~~~~~~l~Cp~~~~f~~~~~~~~v~WYKd~~~l~~~----~~~~~~~~~~~~L~I~~v~~~D~G~YtC~~~~~~~g~ 81 (95)
T cd05897 6 ILFTSTSGKLVCPDLSDFTINRTDVELQWYKDSVLLDKD----NEKFYSLKGSTYLHIIDVSLNDSGYYTCKLQFTHEGK 81 (95)
T ss_pred EeccccCcEEECCCHHHcccCCCCCcEEEccCCEECcCC----CcceEecCCCCEEEEEEcChhhCEEEEEEEEEeeCCE
Confidence 34556788999973 23 466799999999876421 122222 234579999999999999999999998665
No 231
>cd05774 Ig_CEACAM_D1 First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM). IG_CEACAM_D1: immunoglobulin (Ig)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the D
Probab=98.53 E-value=1.5e-06 Score=69.34 Aligned_cols=43 Identities=26% Similarity=0.458 Sum_probs=34.2
Q ss_pred cceEEEccCceEEEcCCCCCCCeEEEEEEEeCC-ceeEEEEEEE
Q psy15127 289 YGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVA-GSTTVRAFLQ 331 (633)
Q Consensus 289 ~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~-g~~~~~~~l~ 331 (633)
.+|..+..+++|.|.+++..|+|.|+|.+.+.. ...+....|.
T Consensus 61 ~gR~~~~~ngSL~I~~v~~~D~G~Y~~~v~~~~~~~~~~~v~l~ 104 (105)
T cd05774 61 SGRETIYPNGSLLIQNVTQKDTGFYTLQTITTNFQVEQATVHLQ 104 (105)
T ss_pred CCcEEEeCCCcEEEecCCcccCEEEEEEEEeCCccEEEEEEEEE
Confidence 356677788999999999999999999999877 3445555544
No 232
>cd04983 IgV_TCR_alpha_like Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) alpha chain and similar proteins. IgV_TCR_alpha: immunoglobulin (Ig) variable domain of the alpha chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group represents the variable domain of the alpha chain of TCRs and also includes the variable domain of delta chains of TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide.
Probab=98.53 E-value=4.2e-07 Score=74.26 Aligned_cols=71 Identities=21% Similarity=0.368 Sum_probs=53.9
Q ss_pred eCCCceEEEcCCeEEEEEEEeccCCCeEEEEeCCcc---------------CCCCCeEEcc-----cceEEEccCCCCCC
Q psy15127 76 SEPSDATVLSGSVVEFVCRVGGDPLPTILWRRDDGK---------------MPTGRAKILD-----DRSLQIENVGPQDE 135 (633)
Q Consensus 76 ~~~~~~~~~~G~~~~L~C~~~~~p~p~i~W~~~~~~---------------i~~~~~~~~~-----~~~L~i~~v~~~d~ 135 (633)
..|..+.+.+|++++|.|.+.+.+...+.|+|.... ...+++.... ...|.|.+++.+|+
T Consensus 3 q~~~~v~~~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~~~~~Ds 82 (109)
T cd04983 3 QSPQSLSVQEGENVTLNCNYSTSTFYYLFWYRQYPGQGPQFLIYISSNGEEKEKGRFSATLDKSRKSSSLHISAAQLSDS 82 (109)
T ss_pred ecCCceEEcCCCCEEEEEEECCCCccEEEEEEECCCCCeEEEEEEecCCCcccCCcEEEEEcccCCEEEEEECCCCHHHC
Confidence 456788899999999999998767778999985421 0123333322 35799999999999
Q ss_pred eEEEEEEEeCC
Q psy15127 136 GLYICDVENLV 146 (633)
Q Consensus 136 G~Y~C~~~n~~ 146 (633)
|.|.|.+.+..
T Consensus 83 G~Y~C~~~~~~ 93 (109)
T cd04983 83 AVYFCALSESG 93 (109)
T ss_pred EEEEEEEecCC
Confidence 99999998653
No 233
>cd05759 Ig2_KIRREL3-like Second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). Ig2_KIRREL3-like: domain similar to the second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.
Probab=98.53 E-value=3.9e-07 Score=69.88 Aligned_cols=68 Identities=21% Similarity=0.387 Sum_probs=48.9
Q ss_pred EEEEEEEec-cCCCeEEEEeCCccCCCCCeE--Ecc-------cceEEEccCCCCCCeEEEEEEEeCCce--EEEEEEEE
Q psy15127 89 VEFVCRVGG-DPLPTILWRRDDGKMPTGRAK--ILD-------DRSLQIENVGPQDEGLYICDVENLVGS--ISLRASLT 156 (633)
Q Consensus 89 ~~L~C~~~~-~p~p~i~W~~~~~~i~~~~~~--~~~-------~~~L~i~~v~~~d~G~Y~C~~~n~~g~--~s~~~~l~ 156 (633)
+.|.|.+.| .|.+.|+|+|+|.++...... ... .+.|.|.....+|.|.|+|.|.|.... ..+.+.|.
T Consensus 2 ~~L~C~v~g~~P~~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~~~~~y~C~a~n~~l~~~~~~s~~l~ 81 (82)
T cd05759 2 YNLTCRARGAKPAAEIIWFRDGEVLDGATYSKELLKDGKRETTVSTLPITPSDHDTGRTFTCRARNEALPTGKETSVTLD 81 (82)
T ss_pred EEEEEEEeCccCCCEEEEEECCEEccCceeeeeEecCCCeEEEEEEEEEeCceecCCCEEEEEEcCccCCCCcEEEEEEc
Confidence 689999986 688899999999987543211 111 246888888888999999999987544 34444443
No 234
>cd05896 Ig1_IL1RAPL-1_like First immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1). Ig1_ IL1RAPL-1_like: domain similar to the first immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1). IL-1 alpha and IL-1 beta are cytokines which participates in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of
Probab=98.50 E-value=6.9e-07 Score=69.45 Aligned_cols=83 Identities=14% Similarity=0.167 Sum_probs=58.8
Q ss_pred eEEecCCceEEEEEEEe-----------eecCCeeEEEECCEEEEeccCCcc--ceEEEccCceEEEcCCCCCCCeEEEE
Q psy15127 249 LLIWNHPRVNRLSCFAE-----------GSPLPSVFWTQEGSQVLMFPGNAY--GHLHVTQEGTLRIQGVQKEDAGFFVC 315 (633)
Q Consensus 249 ~~~~~~g~~~~l~C~~~-----------g~p~~~v~W~~~g~~~~~~~~~~~--~~~~~~~~~~l~i~~~~~~d~G~Y~C 315 (633)
...+.+|+.+.|.|... ......++|+|++..+.......+ .|+.. .+..|.|.++..+|+|.|+|
T Consensus 9 ~~~~~~GE~v~l~C~~~~~~~~~~~~~~~~~~~~v~WyK~~~~~~~~~~~~~~~~Ri~~-~~~~Lwf~Pa~~eDSG~Y~C 87 (104)
T cd05896 9 KYMVLAGEPVRIKCALFYGYIRTNYSMAQSAGLSLMWYKSSGDGEEPIEIIFDGVRMSK-EEDSIWFRPAELQDSGLYTC 87 (104)
T ss_pred eEEEcCCCeEEEECCCccccccccccccccCCceEEEEECCCCCCCCCcccccceeEEE-eCCEEEEEeCChhhCeEEEE
Confidence 35567899999999962 112348999999755432221111 24333 45589999999999999999
Q ss_pred EEEeCCceeEEEEEEEE
Q psy15127 316 SALSVAGSTTVRAFLQV 332 (633)
Q Consensus 316 ~a~n~~g~~~~~~~l~v 332 (633)
.+.|.......++.|+|
T Consensus 88 ~~rN~t~C~~~~i~l~V 104 (104)
T cd05896 88 VLRNSTYCMKVSMSLTV 104 (104)
T ss_pred EECCCCcceEEEEEEEC
Confidence 99999877777776653
No 235
>cd05899 IgV_TCR_beta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) bet a chain. IgV_TCR_beta: immunoglobulin (Ig) variable domain of the beta chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group includes the variable domain of the alpha chain of alpha/beta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide.
Probab=98.49 E-value=6.1e-07 Score=73.27 Aligned_cols=70 Identities=23% Similarity=0.405 Sum_probs=52.3
Q ss_pred eeCCCceEEEcCCeEEEEEEEeccCCCeEEEEeCCc--cC-----------------CCCCeEEc----ccceEEEccCC
Q psy15127 75 ISEPSDATVLSGSVVEFVCRVGGDPLPTILWRRDDG--KM-----------------PTGRAKIL----DDRSLQIENVG 131 (633)
Q Consensus 75 ~~~~~~~~~~~G~~~~L~C~~~~~p~p~i~W~~~~~--~i-----------------~~~~~~~~----~~~~L~i~~v~ 131 (633)
...|..+.+.+|++++|.|.+.+ +...+.|||... .. ..+++... ...+|.|.+++
T Consensus 2 ~Q~p~~~~v~~G~~v~l~C~~~~-~~~~v~Wykq~~g~~~~~l~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~~~ 80 (110)
T cd05899 2 TQSPRYLIKGRGQSVTLRCSQTS-GHDNMYWYRQDPGKGLQLLFYSNGGSLNEEEGDPKDRFSASRPSLTRSSLTIKSAE 80 (110)
T ss_pred EECCCceEEcCCCcEEEEEEECC-CCCEEEEEEECCCCCcEEEEEEcCCCceEecCccCCceEEECcCCCccEEEECCCC
Confidence 35677889999999999999987 667899999642 11 01222221 13579999999
Q ss_pred CCCCeEEEEEEEeC
Q psy15127 132 PQDEGLYICDVENL 145 (633)
Q Consensus 132 ~~d~G~Y~C~~~n~ 145 (633)
.+|+|.|.|.+.+.
T Consensus 81 ~~Dsg~Y~Ca~~~~ 94 (110)
T cd05899 81 PEDSAVYLCASSLG 94 (110)
T ss_pred hhhCEEEEEEeeCC
Confidence 99999999998764
No 236
>cd05900 Ig_Aggrecan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan. Ig_Aggrecan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan. These aggregates contribute to the tissue's load bearing properties. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Aggrecan has a wide distribution in connective tissue and extracellular matrices. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes.
Probab=98.49 E-value=1.1e-06 Score=70.91 Aligned_cols=75 Identities=21% Similarity=0.305 Sum_probs=54.3
Q ss_pred cCCeEEEEEEEeccC------------CCeEEEEeCC--ccC------------C---CCCeEEc------ccceEEEcc
Q psy15127 85 SGSVVEFVCRVGGDP------------LPTILWRRDD--GKM------------P---TGRAKIL------DDRSLQIEN 129 (633)
Q Consensus 85 ~G~~~~L~C~~~~~p------------~p~i~W~~~~--~~i------------~---~~~~~~~------~~~~L~i~~ 129 (633)
.|++++|.|...... .+.|.|+|.. ... . .+|..+. .+.+|+|.+
T Consensus 1 ~G~~VtLpC~~~~~~~~~~~~~~~~~~~~~I~W~k~~~g~~~~ii~~~~~~~~~~~~f~~R~sl~~~~~~~~~asL~I~n 80 (112)
T cd05900 1 LGSSLLIPCYFQDPIAKDPGAPTVAPLSPRIKWSFISKEKESVLLVATEGKVRVNTEYLDRVSLPNYPAIPSDATLEITE 80 (112)
T ss_pred CCCcEEEeeEEeCCcCccccccccCCCCCEEEEEEecCCCccEEEEEECCeEEECccccCeEEecccCCCCCCcEEEEee
Confidence 489999999986432 3589999852 111 0 1233332 356899999
Q ss_pred CCCCCCeEEEEEEEeCCceEEEEEEEEEEe
Q psy15127 130 VGPQDEGLYICDVENLVGSISLRASLTVHL 159 (633)
Q Consensus 130 v~~~d~G~Y~C~~~n~~g~~s~~~~l~V~~ 159 (633)
++.+|+|.|.|.+.......+..+.|.|..
T Consensus 81 l~~sDsG~Y~C~V~~g~~~~~~~v~l~v~g 110 (112)
T cd05900 81 LRSNDSGTYRCEVMHGIEDNYDTVEVQVKG 110 (112)
T ss_pred cccccCEEEEEEEecCCCCceeEEEEEEEe
Confidence 999999999999997766677777777764
No 237
>cd05879 Ig_P0 Immunoglobulin (Ig)-like domain of Protein zero (P0). Ig_P0ex: immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin.
Probab=98.49 E-value=1e-06 Score=71.69 Aligned_cols=72 Identities=22% Similarity=0.303 Sum_probs=51.3
Q ss_pred CCCceEEEcCCeEEEEEEEecc----CCCeEEEEe---------------CCccCC--C----CCeEE-----cccceEE
Q psy15127 77 EPSDATVLSGSVVEFVCRVGGD----PLPTILWRR---------------DDGKMP--T----GRAKI-----LDDRSLQ 126 (633)
Q Consensus 77 ~~~~~~~~~G~~~~L~C~~~~~----p~p~i~W~~---------------~~~~i~--~----~~~~~-----~~~~~L~ 126 (633)
.+..+.+..|+.++|.|.+... +...|.|.+ +|.... . +|... ..+.+|.
T Consensus 4 ~~~ev~a~~G~~v~L~C~f~~~~~~~~~~~v~W~~~~~~~~~~~~v~~y~~g~~~~~~~~~f~~Rv~f~g~~~~~daSI~ 83 (116)
T cd05879 4 TDREVYGTVGSDVTLSCSFWSSEWISDDISFTWHYQPDGSRDAISIFHYGKGQPYIDDVGPFKERIEWVGNPSRKDGSIV 83 (116)
T ss_pred ccceEEEEcCCcEEEEEEEecCCCCCCcEEEEEEEcCCCCCccEEEEEeCCCceecccccCccCceEEeCCCCcCeeEEE
Confidence 3567789999999999999653 235799933 333221 1 23322 2346899
Q ss_pred EccCCCCCCeEEEEEEEeCCce
Q psy15127 127 IENVGPQDEGLYICDVENLVGS 148 (633)
Q Consensus 127 i~~v~~~d~G~Y~C~~~n~~g~ 148 (633)
|.+++.+|+|.|+|.+.|..+.
T Consensus 84 I~nv~~sD~G~Y~C~v~n~p~~ 105 (116)
T cd05879 84 IHNLDYTDNGTFTCDVKNPPDI 105 (116)
T ss_pred EccCCcccCEEEEEEEEcCCCc
Confidence 9999999999999999987543
No 238
>smart00410 IG_like Immunoglobulin like. IG domains that cannot be classified into one of IGv1, IGc1, IGc2, IG.
Probab=98.47 E-value=2.2e-06 Score=66.20 Aligned_cols=78 Identities=32% Similarity=0.569 Sum_probs=59.7
Q ss_pred EEecCCceEEEEEEEeeecCCeeEEEEC-CEEEEeccCCccceEEEcc---CceEEEcCCCCCCCeEEEEEEEeCCceeE
Q psy15127 250 LIWNHPRVNRLSCFAEGSPLPSVFWTQE-GSQVLMFPGNAYGHLHVTQ---EGTLRIQGVQKEDAGFFVCSALSVAGSTT 325 (633)
Q Consensus 250 ~~~~~g~~~~l~C~~~g~p~~~v~W~~~-g~~~~~~~~~~~~~~~~~~---~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~ 325 (633)
..+..|+.+.|.|.+.+.+.+.+.|+++ +..+. .. .+..... ...|.|.++...|+|.|.|.+.+..+...
T Consensus 4 ~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~v~--~~---~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~v~~~~~~~~ 78 (86)
T smart00410 4 VTVKEGESVTLSCEVSGSPPPEVTWYKQGGKLLA--ES---GRFSVSRSGSNSTLTISNVTPEDSGTYTCAATNSSGSAS 78 (86)
T ss_pred EEEeCCCeEEEEEEEccCCCCeEEEEECCCEEcC--CC---CcEEEEEcCCeeEEEEEeeccccCeEEEEEEEcCCCeEE
Confidence 3456789999999999988889999998 66553 11 2222222 25899999999999999999998888776
Q ss_pred EEEEEEE
Q psy15127 326 VRAFLQV 332 (633)
Q Consensus 326 ~~~~l~v 332 (633)
..+.|.|
T Consensus 79 ~~~~l~V 85 (86)
T smart00410 79 STTTLTV 85 (86)
T ss_pred EEEEEEE
Confidence 6666654
No 239
>smart00409 IG Immunoglobulin.
Probab=98.47 E-value=2.2e-06 Score=66.20 Aligned_cols=78 Identities=32% Similarity=0.569 Sum_probs=59.7
Q ss_pred EEecCCceEEEEEEEeeecCCeeEEEEC-CEEEEeccCCccceEEEcc---CceEEEcCCCCCCCeEEEEEEEeCCceeE
Q psy15127 250 LIWNHPRVNRLSCFAEGSPLPSVFWTQE-GSQVLMFPGNAYGHLHVTQ---EGTLRIQGVQKEDAGFFVCSALSVAGSTT 325 (633)
Q Consensus 250 ~~~~~g~~~~l~C~~~g~p~~~v~W~~~-g~~~~~~~~~~~~~~~~~~---~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~ 325 (633)
..+..|+.+.|.|.+.+.+.+.+.|+++ +..+. .. .+..... ...|.|.++...|+|.|.|.+.+..+...
T Consensus 4 ~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~v~--~~---~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~v~~~~~~~~ 78 (86)
T smart00409 4 VTVKEGESVTLSCEVSGSPPPEVTWYKQGGKLLA--ES---GRFSVSRSGSNSTLTISNVTPEDSGTYTCAATNSSGSAS 78 (86)
T ss_pred EEEeCCCeEEEEEEEccCCCCeEEEEECCCEEcC--CC---CcEEEEEcCCeeEEEEEeeccccCeEEEEEEEcCCCeEE
Confidence 3456789999999999988889999998 66553 11 2222222 25899999999999999999998888776
Q ss_pred EEEEEEE
Q psy15127 326 VRAFLQV 332 (633)
Q Consensus 326 ~~~~l~v 332 (633)
..+.|.|
T Consensus 79 ~~~~l~V 85 (86)
T smart00409 79 STTTLTV 85 (86)
T ss_pred EEEEEEE
Confidence 6666654
No 240
>cd05714 Ig_CSPGs_LP Immunoglobulin (Ig)-like domain of chondroitin sulfate proteoglycans (CSPGs), human cartilage link protein (LP) and similar proteins. Ig_CSPGs_LP: immunoglobulin (Ig)-like domain similar to that found in chondroitin sulfate proteoglycans (CSPGs) and human cartilage link protein (LP). Included in this group are the CSPGs aggrecan, versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue.
Probab=98.45 E-value=1.5e-06 Score=70.38 Aligned_cols=75 Identities=28% Similarity=0.449 Sum_probs=55.0
Q ss_pred cCCeEEEEEEEeccC------CCeEEEEeCC---c-c--C---CCC----------CeEE----cccceEEEccCCCCCC
Q psy15127 85 SGSVVEFVCRVGGDP------LPTILWRRDD---G-K--M---PTG----------RAKI----LDDRSLQIENVGPQDE 135 (633)
Q Consensus 85 ~G~~~~L~C~~~~~p------~p~i~W~~~~---~-~--i---~~~----------~~~~----~~~~~L~i~~v~~~d~ 135 (633)
.|++++|.|.....+ ...|.|+|.. . . + ..+ +... ..+.+|+|.+++.+|+
T Consensus 1 ~G~~V~L~C~~~~~~~~~~~~~~~i~W~k~~~~~~~~~~v~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~~v~~sD~ 80 (106)
T cd05714 1 LGGNVTLPCRFHLEPALSAPHGPRIKWTKLESDGAKEVDVLVAIGGRVKVYGSGRVRVPLYPADPGDASLVITDLRLEDS 80 (106)
T ss_pred CCCCEEEeEEeECCcccCCCCCcEEEEEEeCCCCCceEEEEEEcCCEEEEcCCCceEEEeeCCCCCcceEEECCCCHHHC
Confidence 489999999987543 4589999972 1 0 1 011 1111 1246899999999999
Q ss_pred eEEEEEEEeCCceEEEEEEEEEEe
Q psy15127 136 GLYICDVENLVGSISLRASLTVHL 159 (633)
Q Consensus 136 G~Y~C~~~n~~g~~s~~~~l~V~~ 159 (633)
|.|.|.+.+..+..+..+.|.|.+
T Consensus 81 G~Y~C~v~~~~~~~~~~v~L~V~~ 104 (106)
T cd05714 81 GRYRCEVIDGIEDEQDTVELEVRG 104 (106)
T ss_pred EEEEEEEEcCCCceEEEEEEEEEE
Confidence 999999998877778888888875
No 241
>cd05877 Ig_LP_like Immunoglobulin (Ig)-like domain of human cartilage link protein (LP). Ig_LP_like: immunoglobulin (Ig)-like domain similar to that that found in human cartilage link protein (LP). In cartilage, chondroitin-keratan sulfate proteoglycan (CSPG), aggrecan, forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes.
Probab=98.45 E-value=1.7e-06 Score=70.10 Aligned_cols=75 Identities=25% Similarity=0.420 Sum_probs=55.5
Q ss_pred cCCeEEEEEEEeccC------CCeEEEEeCCcc--------CC-----------CCCeEEcc----cceEEEccCCCCCC
Q psy15127 85 SGSVVEFVCRVGGDP------LPTILWRRDDGK--------MP-----------TGRAKILD----DRSLQIENVGPQDE 135 (633)
Q Consensus 85 ~G~~~~L~C~~~~~p------~p~i~W~~~~~~--------i~-----------~~~~~~~~----~~~L~i~~v~~~d~ 135 (633)
.|++++|.|.....| ...|.|+|.... +. .++..... +.+|.|.+++.+|+
T Consensus 1 ~G~~vtL~C~~~~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~sL~I~~v~~~Ds 80 (106)
T cd05877 1 RGGNVTLPCRYHYEPELSAPRKIRVKWTKLESDYLKEEDVLVAIGTRHKSYGSYQGRVFLRRAHDLDASLVITDLRLEDY 80 (106)
T ss_pred CCCcEEEEeEeECCCcCCCCccceEEEEEecCCCCeeEEEEEEcCcEEEeccCccCcEEecCCCCCcEEEEEccCChHHC
Confidence 489999999986542 346999996421 00 12223221 34799999999999
Q ss_pred eEEEEEEEeCCceEEEEEEEEEEe
Q psy15127 136 GLYICDVENLVGSISLRASLTVHL 159 (633)
Q Consensus 136 G~Y~C~~~n~~g~~s~~~~l~V~~ 159 (633)
|.|.|.+.+..+.....+.|.|..
T Consensus 81 G~Y~C~v~~~~~~~~~~~~l~v~~ 104 (106)
T cd05877 81 GRYRCEVIDGLEDESVVVALRLRG 104 (106)
T ss_pred EEEEEEEEecccceEEEEEEEEEE
Confidence 999999999888888888888875
No 242
>KOG4802|consensus
Probab=98.44 E-value=2.3e-06 Score=81.16 Aligned_cols=176 Identities=16% Similarity=0.144 Sum_probs=103.7
Q ss_pred EEeeCCeEEEEeCCCCCCCCCCcceeEEEEE----EE-----EecCCCCeEEEEEeeeeceEEEecCCCCCeEEEEEEEE
Q psy15127 419 LNTTRGSVTLGWGEPEPRGGGVAPVIGYTVE----YF-----SSDLQTGWVVAAHRITSTSITVSDLKPDTSYMFIVRAE 489 (633)
Q Consensus 419 ~~~~~~~i~l~W~~~~~~~~~~~~i~~Y~v~----~~-----~~~~~~~~~~~~~~~~~~~~~i~~L~p~~~Y~~~v~a~ 489 (633)
......++.+.|...... .+....+. |. .+.....|+..........+.++++.|+..|+|+++|+
T Consensus 155 ~r~~~g~~av~w~~~~~~-----~v~~~~~~vr~~w~~g~hase~~~thwQtv~~t~~e~~~~~t~~rPgRwyefrvaav 229 (516)
T KOG4802|consen 155 FRRSRGSHAVDWKIESSL-----LVYYVHVEVRSHWGRGFHASELGPTHWQTVEKTMEENTYIFTDMRPGRWYEFRVAAV 229 (516)
T ss_pred hhhccCceeeeeeecccc-----ceeeeehhhhhhhcccccccccccccceeeeecCCCceeeeeecCcceeEEEEEeee
Confidence 345667788999876622 22222222 11 11123457766555445578899999999999999999
Q ss_pred eccccCCCCCCCCceeecCC--CCCCCcchHHHHHHHhCCceEEeeeeeecccceEEEEEEEecCCCcccccchhhhhcc
Q psy15127 490 NSHGLGIPSPVSPITRTLGL--NSLVPQHLLDEARARLGTKVVNLRELIPTASTAVRITWEVSWGSVPQHLLDEARARLG 567 (633)
Q Consensus 490 n~~G~g~~s~~~~~~~t~~~--~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~si~v~W~~p~~~~p~~~~~~~~~i~~ 567 (633)
|..|.--++.++..+..... +|.+|.++. .+ .+.........|.|.|+ ..+-++..
T Consensus 230 n~~G~rGFs~PSkpf~ssk~pkaPp~P~dl~----------l~---~v~~dG~~~~~v~w~P~---------~sdlPv~~ 287 (516)
T KOG4802|consen 230 NAYGFRGFSEPSKPFPSSKNPKAPPSPNDLK----------LI---GVQFDGRYMLKVVWCPS---------KSDLPVEK 287 (516)
T ss_pred ecccccccCCCCCCCCCCCCCCCCcCcccce----------ee---eeeecceEEEEEEeCCC---------CCCCccee
Confidence 99987555555533443333 233332220 11 11122233477888854 45678999
Q ss_pred eeEEEEEEcCCCcccceeeeeeccceeEeecCCccceEEeeccccceeEEEEEeccccccccc
Q psy15127 568 TKVVNLRELIPTASTAVRITWEKYNMATVMNAATTTSYTVTHLRKFTKYEFFLVPFFKTVEGA 630 (633)
Q Consensus 568 y~~i~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~i~~L~~~t~Y~~~v~a~n~~g~g~ 630 (633)
| .|.|.-...... .+..+. .....+.+.++ |.+|.|+..|.|.|.|..-.|.+.
T Consensus 288 Y-ki~Ws~~v~s~k----~~m~tk--s~~~k~thq~s--i~~L~Pns~Y~VevqAi~y~g~~r 341 (516)
T KOG4802|consen 288 Y-KITWSLYVNSAK----ASMITK--SSYVKDTHQFS--IKELLPNSSYYVEVQAISYLGSRR 341 (516)
T ss_pred e-EEEeehhhhhhh----hhcccc--cceeeccchhh--hhhcCCCCeEEEEEEEEEeccCcc
Confidence 9 888865442210 001111 11222333333 999999999999999999888764
No 243
>cd05878 Ig_Aggrecan_like Immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG). Ig_Aggrecan_like: immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG)s. Included in this group are the Ig domains of other CSPGs: versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substi
Probab=98.40 E-value=2.8e-06 Score=68.95 Aligned_cols=74 Identities=27% Similarity=0.426 Sum_probs=53.9
Q ss_pred CCeEEEEEEEeccC----------CCeEEEEeCC--ccC------------C---CCCeEEc------ccceEEEccCCC
Q psy15127 86 GSVVEFVCRVGGDP----------LPTILWRRDD--GKM------------P---TGRAKIL------DDRSLQIENVGP 132 (633)
Q Consensus 86 G~~~~L~C~~~~~p----------~p~i~W~~~~--~~i------------~---~~~~~~~------~~~~L~i~~v~~ 132 (633)
|++++|.|.....+ ...|.|+|.. ... . .+|.... .+.+|+|.+++.
T Consensus 2 G~~V~LpC~~~~~~~~~~~~~~~~~~~i~W~k~~~~~~~~v~~~~~~~~~~~~~f~gR~~~~~~~~~~~~asL~I~~l~~ 81 (110)
T cd05878 2 SSSVLLPCYFTLPPALPPPSNAPESPRIKWTKLSGQKEVTVLVAQDGVVKVGQEYQGRVSLPNYPENRGDASLEISRLRS 81 (110)
T ss_pred CCCEEEeeEeeCCccccccccCCCCCEEEEEEecCCCcEEEEEEECCEEEecccccCeEEeccCCCCCCcEEEEECCCCh
Confidence 88999999996543 2569999952 211 0 1233331 235799999999
Q ss_pred CCCeEEEEEEEeCCceEEEEEEEEEEe
Q psy15127 133 QDEGLYICDVENLVGSISLRASLTVHL 159 (633)
Q Consensus 133 ~d~G~Y~C~~~n~~g~~s~~~~l~V~~ 159 (633)
+|+|.|.|.+.......++.+.|.|.+
T Consensus 82 sD~G~Y~C~v~~~~~~~~~~v~l~V~g 108 (110)
T cd05878 82 SDSGVYRCEVMHGIEDEQDTVPLEVTG 108 (110)
T ss_pred hhCEEEEEEEEeCCCcceEEEEEEEEE
Confidence 999999999988666678888888875
No 244
>cd05713 Ig_MOG_like Immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG). Ig_MOG_like: immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG). MOG, a minor component of the myelin sheath, is an important CNS-specific autoantigen, linked to the pathogenesis of multiple sclerosis (MS) and experimental autoimmune encephalomyelitis (EAE). It is a transmembrane protein having an extracellular Ig domain. MOG is expressed in the CNS on the outermost lamellae of the myelin sheath, and on the surface of oligodendrocytes, and may participate in the completion, compaction, and/or maintenance of myelin. This group also includes butyrophilin (BTN). BTN is the most abundant protein in bovine milk-fat globule membrane (MFGM).
Probab=98.36 E-value=3.5e-06 Score=67.46 Aligned_cols=72 Identities=28% Similarity=0.403 Sum_probs=49.7
Q ss_pred CCeEEEEEEEeccC---CCeEEEEeCCcc--C---------C-------CCCeEEc------ccceEEEccCCCCCCeEE
Q psy15127 86 GSVVEFVCRVGGDP---LPTILWRRDDGK--M---------P-------TGRAKIL------DDRSLQIENVGPQDEGLY 138 (633)
Q Consensus 86 G~~~~L~C~~~~~p---~p~i~W~~~~~~--i---------~-------~~~~~~~------~~~~L~i~~v~~~d~G~Y 138 (633)
|++++|.|...... ...+.|+|.... + . .+|.... .+.+|+|.+++.+|+|.|
T Consensus 1 G~~v~L~C~~~~~~~~~~~~v~W~k~~~~~~v~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y 80 (100)
T cd05713 1 GEDAELPCHLSPKMSAEHMEVRWFRSQFSPAVHLYRDGQDQYGEQMPEYRGRTELLKDAIAEGSVALRIHNVRASDEGLY 80 (100)
T ss_pred CCcEEEEeEEcCCCCCCeeEEEEEECCCceeEEEEcCCcccccccCccccceEEeecccccCCcEEEEEEcCChhhCEEE
Confidence 78999999986322 225888885421 1 0 0222221 125799999999999999
Q ss_pred EEEEEeCCceEEEEEEEEE
Q psy15127 139 ICDVENLVGSISLRASLTV 157 (633)
Q Consensus 139 ~C~~~n~~g~~s~~~~l~V 157 (633)
+|.+.+..+..+..+.|.|
T Consensus 81 ~C~v~~~~~~~~~~i~l~v 99 (100)
T cd05713 81 TCFFQSDGFYEEATVELKV 99 (100)
T ss_pred EEEEecCCcEEEEEEEEEE
Confidence 9999987776777777765
No 245
>cd05711 Ig_FcalphaRI Immunoglobulin (IG)-like domain of of FcalphaRI. IG_FcalphaRI : immunoglobulin (IG)-like domain of of FcalphaRI. FcalphaRI (CD89) is an IgA-specific receptor that is expressed on monocytes, eosinophils, neutrophils and macrophages. FcalphaRI mediates IgA-induced immune effector responses such as phagocytosis, antibody-dependent cell-mediated cytotoxicity and respiratory burst. Both monomeric and dimeric IgA can bind to FcalphaRI, and monomeric or dimeric IgA immune complexes can activate phagocytosis and other immune responses through the clustering of FcalphaRI. The Fc RI ectodomain is comprised of two Ig-like domains oriented at about 90 degree to each another.
Probab=98.34 E-value=2.2e-06 Score=67.38 Aligned_cols=71 Identities=23% Similarity=0.334 Sum_probs=50.8
Q ss_pred CCeeeeCCCceEEEcCCeEEEEEEEeccCCCeEEEEeCCccCCCC----CeEEcccceEEEccCCCCCCeEEEEEEE
Q psy15127 71 KPFPISEPSDATVLSGSVVEFVCRVGGDPLPTILWRRDDGKMPTG----RAKILDDRSLQIENVGPQDEGLYICDVE 143 (633)
Q Consensus 71 ~p~~~~~~~~~~~~~G~~~~L~C~~~~~p~p~i~W~~~~~~i~~~----~~~~~~~~~L~i~~v~~~d~G~Y~C~~~ 143 (633)
+|.+...| ...+.+|++|+|.|.... ..-.+.|+|+|...... .........|.|.+++.+|+|.|.|...
T Consensus 1 kP~l~a~p-~~vV~~G~~VTL~C~~~~-~~~~f~l~k~g~~~~~~~~~~~~~~~~~a~f~I~~~~~~~~G~Y~C~~~ 75 (94)
T cd05711 1 KPFLSAHP-SPVVPSGENVTLQCHSDI-RFDRFILYKEGRSKPVLHLYEKHHGGFQASFPLGPVTPAHAGTYRCYGS 75 (94)
T ss_pred CCEEEecC-CCccCCCCeEEEEEecCC-CCCEEEEEECCCCCCceecccccCCeEEEEEEecCCCcccCEEEEEEEE
Confidence 45665555 556889999999998754 45579999988753211 0001113478999999999999999975
No 246
>cd05718 Ig1_PVR_like First immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155) and similar proteins. Ig1_PVR_like: domain similar to the first immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155). Poliovirus (PV) binds to its cellular receptor (PVR/CD155) to initiate infection. CD155 is a membrane-anchored, single-span glycoprotein; its extracellular region has three Ig-like domains. There are four different isotypes of CD155 (referred to as alpha, beta, gamma, and delta), that result from alternate splicing of the CD155 mRNA, and have identical extracellular domains. CD155-beta and - gamma, are secreted, CD155-alpha and delta are membrane-bound and function as PV receptors. The virus recognition site is contained in the amino-terminal domain, D1. Having the virus attachment site on the receptor distal from the plasma membrane, may be important for successful initiation of infection of cells by the virus. CD155 binds in the poliovirus "c
Probab=98.33 E-value=3.8e-06 Score=67.02 Aligned_cols=71 Identities=30% Similarity=0.575 Sum_probs=50.5
Q ss_pred CeEEEEEEEeccC---CCeEEEEeCCcc----C-----------C---CCCeEEc----ccceEEEccCCCCCCeEEEEE
Q psy15127 87 SVVEFVCRVGGDP---LPTILWRRDDGK----M-----------P---TGRAKIL----DDRSLQIENVGPQDEGLYICD 141 (633)
Q Consensus 87 ~~~~L~C~~~~~p---~p~i~W~~~~~~----i-----------~---~~~~~~~----~~~~L~i~~v~~~d~G~Y~C~ 141 (633)
++++|.|.....+ ...|.|+|.... + . .++.... .+.+|+|.+++.+|+|.|.|.
T Consensus 1 ~~v~L~C~~~~~~~~~~~~v~W~k~~~~~~~~i~~~~~~~~~~~~~~~~~R~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~ 80 (98)
T cd05718 1 ESVTLECSFPVPGPVQITQVTWMKITGGSKQNIAVFHPQYGISIPPSYEGRVSFLNSSLEDATISISNLRLEDEGNYICE 80 (98)
T ss_pred CCEEEEeEeeCCCCceEEEEEEeeECCCCCEEEEEEecCCCcccCcCcCceEEEeCCCCCceEEEEccCCcccCEEEEEE
Confidence 5789999987643 336999996431 0 0 1122222 246899999999999999999
Q ss_pred EEe-CCceEEEEEEEEE
Q psy15127 142 VEN-LVGSISLRASLTV 157 (633)
Q Consensus 142 ~~n-~~g~~s~~~~l~V 157 (633)
+.. ..|...+.+.|.|
T Consensus 81 v~~~~~g~~~~~~~l~V 97 (98)
T cd05718 81 FATFPQGNRQKVTTLTV 97 (98)
T ss_pred EEeCCCCcEEEEEEEEe
Confidence 975 5677788888776
No 247
>cd05741 Ig_CEACAM_D1_like First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) and similar proteins. Ig_CEACAM_D1_like : immunoglobulin (IG)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily-like. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surf
Probab=98.31 E-value=3.2e-06 Score=66.58 Aligned_cols=76 Identities=22% Similarity=0.349 Sum_probs=54.0
Q ss_pred CceEEEEEEEeeecCCeeEEEECCEEEE-------------eccCCccceEEEccCceEEEcCCCCCCCeEEEEEEEeCC
Q psy15127 255 PRVNRLSCFAEGSPLPSVFWTQEGSQVL-------------MFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVA 321 (633)
Q Consensus 255 g~~~~l~C~~~g~p~~~v~W~~~g~~~~-------------~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~ 321 (633)
|++|+|.|.........+.|++...... .....-..|+....+++|.|.+++.+|+|.|+|.+....
T Consensus 1 G~~VtL~c~~~~~~~~~i~W~~~~~~~~~~~i~~~~~~~~~~~~~~~~~R~~~~~~~sL~I~~l~~~DsG~Y~c~v~~~~ 80 (92)
T cd05741 1 GESVTLPVSNLPENLQEITWYKGKDKSVEAEIASYIATNSTVFGPAYSGRETIYPNGSLLIQNLTKEDSGTYTLQIISTN 80 (92)
T ss_pred CCcEEEEcccCCCCCEEEEEECCCCCCcceEEEEEecCCceeECCCcCCeEEEcCCceEEEccCCchhcEEEEEEEEcCC
Confidence 6889999998776667999998753211 001122356667677899999999999999999998876
Q ss_pred ce-eEEEEEE
Q psy15127 322 GS-TTVRAFL 330 (633)
Q Consensus 322 g~-~~~~~~l 330 (633)
|. ....+.|
T Consensus 81 ~~~~~~~~~l 90 (92)
T cd05741 81 GVTENAKFFL 90 (92)
T ss_pred CcEEEEEEEE
Confidence 43 3444443
No 248
>cd05759 Ig2_KIRREL3-like Second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). Ig2_KIRREL3-like: domain similar to the second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.
Probab=98.30 E-value=4e-06 Score=64.23 Aligned_cols=64 Identities=27% Similarity=0.424 Sum_probs=44.8
Q ss_pred EEEEEEEee-ecCCeeEEEECCEEEEeccCCccceEEE------ccCceEEEcCCCCCCCeEEEEEEEeCCcee
Q psy15127 258 NRLSCFAEG-SPLPSVFWTQEGSQVLMFPGNAYGHLHV------TQEGTLRIQGVQKEDAGFFVCSALSVAGST 324 (633)
Q Consensus 258 ~~l~C~~~g-~p~~~v~W~~~g~~~~~~~~~~~~~~~~------~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~ 324 (633)
+.|.|.+.| .|.+.++|+++|..+... ....... ...+.|.|.....+|.|.|+|.|.|.....
T Consensus 2 ~~L~C~v~g~~P~~~v~W~~~g~~l~~~---~~~~~~~~~~~~~~~~s~L~i~~~~~~~~~~y~C~a~n~~l~~ 72 (82)
T cd05759 2 YNLTCRARGAKPAAEIIWFRDGEVLDGA---TYSKELLKDGKRETTVSTLPITPSDHDTGRTFTCRARNEALPT 72 (82)
T ss_pred EEEEEEEeCccCCCEEEEEECCEEccCc---eeeeeEecCCCeEEEEEEEEEeCceecCCCEEEEEEcCccCCC
Confidence 689999987 688899999999876421 1001111 112367888888888999999999876443
No 249
>cd05775 Ig_SLAM-CD84_like_N N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like. Ig_SLAM-CD84_like_N: The N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like. The SLAM family is a group of immune-cell specific receptors that can regulate both adaptive and innate immune responses. Members of this group include proteins such as CD84, SLAM (CD150), Ly-9 (CD229), NTB-A (ly-108, SLAM6), 19A (CRACC), and SLAMF9. The genes coding for the SLAM family are nested on chromosome 1, in humans at 1q23, and in mice at 1H2. The SLAM family is a subset of the CD2 family, which also includes CD2 and CD58 located on chromosome 1 at 1p13 in humans. In mice, CD2 is located on chromosome 3, and there is no CD58 homolog. The SLAM family proteins are organized as an extracellular domain with either two or four Ig-like domains, a single transmembrane segment, and a cytoplasmic region
Probab=98.28 E-value=2.2e-06 Score=67.87 Aligned_cols=74 Identities=23% Similarity=0.372 Sum_probs=52.5
Q ss_pred EcCCeEEEEEEEec-cCCCeEEEEeCCccCC--------------C----CCeEEcc-cceEEEccCCCCCCeEEEEEEE
Q psy15127 84 LSGSVVEFVCRVGG-DPLPTILWRRDDGKMP--------------T----GRAKILD-DRSLQIENVGPQDEGLYICDVE 143 (633)
Q Consensus 84 ~~G~~~~L~C~~~~-~p~p~i~W~~~~~~i~--------------~----~~~~~~~-~~~L~i~~v~~~d~G~Y~C~~~ 143 (633)
..|++|+|.|.... .....+.|+|....+. . +|..+.. +.+|+|.+++.+|+|.|.|.+.
T Consensus 2 ~~G~sVtL~c~~~~~~~~~~v~W~~~~~~~i~~~~~~~~~~~~~~~~~f~~R~~~~~~~~sL~I~~~~~~DsG~Y~c~v~ 81 (97)
T cd05775 2 ILGGSVTLPLNIPDGTEIESITWSFNTSLAIITPGEETAPEIIVTDPSYKERVNFSQNDYSLQISNLKMEDAGSYRAEIN 81 (97)
T ss_pred ccCCeEEEeCCCCCCcEEEEEEEecCCEeEEEecCCCCCCccEEeCCCceeeEEecCCceeEEECCCchHHCEEEEEEEE
Confidence 46999999998754 3445799998643210 0 1122222 3689999999999999999998
Q ss_pred eCCce-EEEEEEEEE
Q psy15127 144 NLVGS-ISLRASLTV 157 (633)
Q Consensus 144 n~~g~-~s~~~~l~V 157 (633)
+..|. ....+.|.|
T Consensus 82 ~~~~~~~~~~f~L~v 96 (97)
T cd05775 82 TKNGVTITKEFTLHI 96 (97)
T ss_pred cCCCCeEEEEEEEEe
Confidence 77665 467777766
No 250
>KOG4258|consensus
Probab=98.28 E-value=5.3e-06 Score=86.21 Aligned_cols=129 Identities=16% Similarity=0.082 Sum_probs=86.2
Q ss_pred eEEEecCCCCCeEEEEEEEEecccc----CCCCCCCCceeecCCCCCCCcchHHHHHHHhCCceEEeeeeeecccceEEE
Q psy15127 470 SITVSDLKPDTSYMFIVRAENSHGL----GIPSPVSPITRTLGLNSLVPQHLLDEARARLGTKVVNLRELIPTASTAVRI 545 (633)
Q Consensus 470 ~~~i~~L~p~~~Y~~~v~a~n~~G~----g~~s~~~~~~~t~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~si~v 545 (633)
.+.|.+|.+++.|.+.++|.|.++. +..+.. ..+|+...-. .+.+++| .| ...++.+++.|
T Consensus 783 ~~vi~~Lrh~tlY~i~l~aCnh~~~~~~cS~a~~v--~~RT~~~~~a----------D~i~g~v-~w--e~~~~~~~v~l 847 (1025)
T KOG4258|consen 783 SYVISGLRHFTLYRIDLQACNHATPKCGCSHAAFV--FARTMPTMGA----------DDIPGPV-TW--ECHIEMNSVIL 847 (1025)
T ss_pred hhhhhccccchhhhhhHhhhcccccccccchhhhh--hhcccccccc----------ccCCCce-eE--ecccCcceEEE
Confidence 5678899999999999999999887 322221 2344332110 0112211 11 12237899999
Q ss_pred EEEEecCCCcccccchhhhhcceeEEEEEEcCCCcccceeeeeeccceeEeecCCccceEEeeccccceeEEEEEecccc
Q psy15127 546 TWEVSWGSVPQHLLDEARARLGTKVVNLRELIPTASTAVRITWEKYNMATVMNAATTTSYTVTHLRKFTKYEFFLVPFFK 625 (633)
Q Consensus 546 ~W~~p~~~~p~~~~~~~~~i~~y~~i~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~i~~L~~~t~Y~~~v~a~n~ 625 (633)
+|.+| ..++|.|.+| .|.|+..+.... ....+-..........+..|.+| .|.++|+|..-
T Consensus 848 ~w~EP--------~~pNGli~~Y-~Vk~r~~~~et~---------v~cvsR~~~~k~~gv~l~~l~~G-~y~~~vratSl 908 (1025)
T KOG4258|consen 848 RWLEP--------KEPNGLILNY-EVKYRRNGDETH---------VECVSRMDYAKAGGVYLKRLNPG-NYSVRVRATSL 908 (1025)
T ss_pred ecCCC--------CCCCccEEEE-EEEEeeccCcch---------hhhhhhhhhhhcCceEEEecCCC-cEEEEEEEEee
Confidence 99987 7889999999 999997766531 11111112223456788999887 99999999999
Q ss_pred ccccccC
Q psy15127 626 TVEGARL 632 (633)
Q Consensus 626 ~g~g~~s 632 (633)
+|.|++-
T Consensus 909 aGng~~t 915 (1025)
T KOG4258|consen 909 AGNGSWT 915 (1025)
T ss_pred ccCCCCc
Confidence 9999863
No 251
>cd05881 Ig1_Necl-2 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Ig1_Necl-2: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-2, Necl-2 (also known as cell adhesion molecule 1 (CADM1), SynCAM1, IGSF4A, Tslc1, sgIGSF, and RA175). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-2 is expressed in a wide variety of tissues, and is a
Probab=98.28 E-value=1e-05 Score=62.96 Aligned_cols=73 Identities=14% Similarity=0.194 Sum_probs=52.7
Q ss_pred eeEEecCCceEEEEEEEeeecCCeeEEEECCEEEEeccC---CccceEEEcc----CceEEEcCCCCCCCeEEEEEEEeC
Q psy15127 248 SLLIWNHPRVNRLSCFAEGSPLPSVFWTQEGSQVLMFPG---NAYGHLHVTQ----EGTLRIQGVQKEDAGFFVCSALSV 320 (633)
Q Consensus 248 ~~~~~~~g~~~~l~C~~~g~p~~~v~W~~~g~~~~~~~~---~~~~~~~~~~----~~~l~i~~~~~~d~G~Y~C~a~n~ 320 (633)
..+...+|++++|.|.+.+.....+.|++.+..+..... ....|+.... ..+|.|.++..+|+|.|.|.+...
T Consensus 5 ~nvtv~~G~ta~L~C~v~~~~~~~v~w~~~~~~~i~~~~~~~~~d~Rf~~~~~~~~~~tL~I~~vq~~D~G~Y~Cqv~t~ 84 (95)
T cd05881 5 EDVTVVEGEVAIISCRVKNNDDSVIQLLNPNRQTIYFRDVRPLKDSRFQLVNFSSNELRVSLSNVSLSDEGRYFCQLYTD 84 (95)
T ss_pred CceEEcCCCcEEEEEEEccCCccEEEEEecCCcEEEecCccccCCcCEEEEeCCCCEEEEEECcCCcccCEEEEEEEEcc
Confidence 446678899999999999987778889887754421111 1233444332 226999999999999999999753
No 252
>cd04980 IgV_L_kappa Immunoglobulin (Ig) light chain, kappa type, variable (V) domain. IgV_L_kappa: Immunoglobulin (Ig) light chain, kappa type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.
Probab=98.27 E-value=3.6e-06 Score=68.18 Aligned_cols=72 Identities=19% Similarity=0.354 Sum_probs=51.6
Q ss_pred eeeCCCceEEEcCCeEEEEEEEeccC-CCeEEEEeCC--ccC----------C---CCCeEEcc---cceEEEccCCCCC
Q psy15127 74 PISEPSDATVLSGSVVEFVCRVGGDP-LPTILWRRDD--GKM----------P---TGRAKILD---DRSLQIENVGPQD 134 (633)
Q Consensus 74 ~~~~~~~~~~~~G~~~~L~C~~~~~p-~p~i~W~~~~--~~i----------~---~~~~~~~~---~~~L~i~~v~~~d 134 (633)
+...|..+.+.+|++++|.|.+.+.. ...+.|||.. ... . ..++.... +..|.|.+++.+|
T Consensus 3 v~Q~p~~~~v~~G~~v~L~C~~~~~~~~~~~~Wyrq~~g~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~~~~~D 82 (106)
T cd04980 3 LTQSPATLSVSPGESATISCKASQSVSSNYLAWYQQKPGQAPKLLIYGASTLASGTPSRFSGSGSGTDFTLTISRVEPED 82 (106)
T ss_pred EEECCCcEEECCCCCEEEEEEECCCCCCCcEEEEEECCCCCcEEEEECccccCCCCCCCEEEeccCCEEEEEECCCChHH
Confidence 45667788999999999999987554 5679999853 211 0 11222211 2469999999999
Q ss_pred CeEEEEEEEeC
Q psy15127 135 EGLYICDVENL 145 (633)
Q Consensus 135 ~G~Y~C~~~n~ 145 (633)
+|.|.|.+.+.
T Consensus 83 sg~Y~Ca~~~~ 93 (106)
T cd04980 83 AAVYYCQQYGT 93 (106)
T ss_pred CEEEEEEEeCC
Confidence 99999998643
No 253
>cd05880 Ig_EVA1 Immunoglobulin (Ig)-like domain of epithelial V-like antigen 1 (EVA). Ig_EVA: immunoglobulin (Ig) domain of epithelial V-like antigen 1 (EVA). EVA is also known as myelin protein zero-like 2. EVA is an adhesion molecule, which may play a role in structural organization of the thymus and early lymphocyte development.
Probab=98.26 E-value=4.4e-06 Score=68.46 Aligned_cols=71 Identities=27% Similarity=0.525 Sum_probs=49.3
Q ss_pred CCCceEEEcCCeEEEEEEEeccC----CCeEEEEeC---Ccc---C----------CC----CCeEEc-----ccceEEE
Q psy15127 77 EPSDATVLSGSVVEFVCRVGGDP----LPTILWRRD---DGK---M----------PT----GRAKIL-----DDRSLQI 127 (633)
Q Consensus 77 ~~~~~~~~~G~~~~L~C~~~~~p----~p~i~W~~~---~~~---i----------~~----~~~~~~-----~~~~L~i 127 (633)
.|..+.+.+|++++|.|.....+ ...|.|++. +.. + .. ++.... .+.+|.|
T Consensus 4 ~~~~v~~~~G~~v~L~C~~s~~~~~~~~~~i~W~~~~~~~~~~~~v~~~~~~~~~~~~~~f~~R~~~~~~~~~~~~sL~I 83 (115)
T cd05880 4 TSKEVEAVNGTDVRLKCTFSSSAPIGDTLVITWNFRPLDGGREESVFYYHKRPYPPPDGRFKGRVVWDGNIMRRDASILI 83 (115)
T ss_pred cCceEEEEcCCCEEEEEEEEeCCCCCCcEEEEEEEECCCCCceeEEEEECCCccccCcccccCeEEEecCCcCCceEEEE
Confidence 46678899999999999986432 236999752 111 1 01 111111 2457999
Q ss_pred ccCCCCCCeEEEEEEEeCCc
Q psy15127 128 ENVGPQDEGLYICDVENLVG 147 (633)
Q Consensus 128 ~~v~~~d~G~Y~C~~~n~~g 147 (633)
.+++.+|+|.|.|.+.|...
T Consensus 84 ~~v~~~D~G~Y~C~v~~~~~ 103 (115)
T cd05880 84 WQLQPTDNGTYTCQVKNPPD 103 (115)
T ss_pred eeCChhhCEEEEEEEEeCCC
Confidence 99999999999999997654
No 254
>cd05872 Ig_Sema4B_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4B. Ig_Sema4B_like; Immunoglobulin (Ig)-like domain of Sema4B_like. Sema4B is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4B has extracellular Sema and Ig domains, a transmembrane domain and a short cytoplasmic domain. Sema4B has been shown to preferentially regulate the development of the postsynaptic specialization at the glutamatergic synapses. This cytoplasmic domain includes a PDZ-binding motif upon which the synaptic localization of Sem4B is dependent. Sema4B is a ligand of CLCP1, CLCP1 was identified in an expression profiling analysis, which compared a highly metastic lung cancer subline with its low metastic parental line. Sema4B was shown to promote CLCP1 endocytosis, and their interaction is a potential target for therapeutic intervention of metastasis.
Probab=98.26 E-value=6.7e-06 Score=62.35 Aligned_cols=76 Identities=21% Similarity=0.218 Sum_probs=55.1
Q ss_pred eEEecCCceEEEEEEEeeecCCeeEEEECCEEEEeccCCccceEEEccCceEEEcCCCCCCCeEEEEEEEeCCceeEEEE
Q psy15127 249 LLIWNHPRVNRLSCFAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRA 328 (633)
Q Consensus 249 ~~~~~~g~~~~l~C~~~g~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~ 328 (633)
...+..|+++.|.|...+. ...+.|+++|..+. ...++.....+ |.|..++..|+|.|.|.+. ..|-....+
T Consensus 5 ~~tv~~g~~v~L~C~~~s~-~A~v~W~~ng~~l~-----~~~r~~~~~~G-LlI~~~~~~dsG~Y~C~s~-E~gf~~~~~ 76 (85)
T cd05872 5 NRTVAPGADVVLPCQLRSN-LASPVWLFNGTPLN-----AQFSYRVGTDG-LLILVTSPEHSGTYRCYSE-EEGFQQLVA 76 (85)
T ss_pred EEEEecCCCEEEECCCCCC-CccEEEEECCcccC-----CCcceEEeCCC-CEEEECCHhhCEEEEEEEe-cCCCeEEEE
Confidence 4556788999999999776 66999999999863 12344444444 7799999999999999985 445544444
Q ss_pred EEEE
Q psy15127 329 FLQV 332 (633)
Q Consensus 329 ~l~v 332 (633)
.+.+
T Consensus 77 ~y~l 80 (85)
T cd05872 77 SYSL 80 (85)
T ss_pred EEEE
Confidence 4443
No 255
>cd05886 Ig1_Nectin-1_like First immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111) and similar proteins. Ig1_Nectin-1_like: domain similar to the first immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111). Nectin-1 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. In addition nectins heterophilically trans-interact with other CAMs such as nectin-like molecules (Necls), nectin-1 for example, has been shown to trans-interact with Necl-1. Nectins also interact with various other proteins, including the actin filament (F-actin)-binding protein, afadin. Mutation in the human nectin-1 gene is
Probab=98.25 E-value=1.5e-05 Score=62.80 Aligned_cols=71 Identities=24% Similarity=0.469 Sum_probs=49.9
Q ss_pred eEEEEEEEecc-CCC---eEEEEeCC--cc--C---C-----------CCCeEEc----ccceEEEccCCCCCCeEEEEE
Q psy15127 88 VVEFVCRVGGD-PLP---TILWRRDD--GK--M---P-----------TGRAKIL----DDRSLQIENVGPQDEGLYICD 141 (633)
Q Consensus 88 ~~~L~C~~~~~-p~p---~i~W~~~~--~~--i---~-----------~~~~~~~----~~~~L~i~~v~~~d~G~Y~C~ 141 (633)
.++|.|..... |.. +|.|.+.. .. + . .+|.... .+.+|.|.+++.+|+|.|+|.
T Consensus 2 ~v~L~C~f~~~~~~~~~~~V~W~k~~~~~~~~va~y~~~~g~~~~~~f~~Rv~f~~~~~~daSi~i~nl~~~D~G~Y~C~ 81 (99)
T cd05886 2 DVVLHCSFINPLPPVKITQVTWQKLTNGSKQNVAIYNPSMGVSVLPPYRERVTFKNPSFEDGTISLSRLELEDEGVYICE 81 (99)
T ss_pred cEEEEeEeecCCCCCCeEEEEEEECCCCCceEEEEECCcCCcccCccccCcEEEcCCCCCcceEEEcCCccccCEEEEEE
Confidence 58999999742 211 69998842 11 1 0 1222222 247899999999999999999
Q ss_pred EEe-CCceEEEEEEEEEE
Q psy15127 142 VEN-LVGSISLRASLTVH 158 (633)
Q Consensus 142 ~~n-~~g~~s~~~~l~V~ 158 (633)
+.+ ..|..+..+.|.|.
T Consensus 82 v~t~P~g~~~~~~~L~V~ 99 (99)
T cd05886 82 FATFPTGNRESQLNLTVY 99 (99)
T ss_pred EEeCCCCCeEEEEEEEEC
Confidence 999 57778888888773
No 256
>cd07694 Ig2_CD4 Second immunoglobulin (Ig) domain of CD4. Ig2_CD4; second immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy.
Probab=98.24 E-value=1.6e-05 Score=59.28 Aligned_cols=77 Identities=23% Similarity=0.395 Sum_probs=55.0
Q ss_pred ceEEEcCCeEEEEEEEecc--CCCeEEEEeCCccCCCCCeEEcccceEEEccCCCCCCeEEEEEEEeCCceEEEEEEEEE
Q psy15127 80 DATVLSGSVVEFVCRVGGD--PLPTILWRRDDGKMPTGRAKILDDRSLQIENVGPQDEGLYICDVENLVGSISLRASLTV 157 (633)
Q Consensus 80 ~~~~~~G~~~~L~C~~~~~--p~p~i~W~~~~~~i~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~n~~g~~s~~~~l~V 157 (633)
...+..|++++|.|..... |.+.|+|+..+...-. .....+.+|.+..+...|+|.++|.+..........+.|.|
T Consensus 8 ~~~lL~G~sLtLtl~~~s~s~p~~~i~w~~P~n~~~~--~~~~~~ktL~~~qv~~qdSG~WtC~V~~~~k~~~~~~~V~V 85 (88)
T cd07694 8 SDHVLSGTNLTLTLHGSSNSLPAFKVEWRGPGNKSKQ--ILNQDKKTLNLVQLGPNDSGTWDCIVSVNSSEKTLKLDIKV 85 (88)
T ss_pred CCeeecCCcEEEEEecCCCCCCCccEEEeCCCCccce--eccCCccEEEeceeCcccCCEEEEEEEECceEEEEEeeEEE
Confidence 4468899999999998543 3458999986654321 11124568999999999999999999765444455555555
Q ss_pred E
Q psy15127 158 H 158 (633)
Q Consensus 158 ~ 158 (633)
.
T Consensus 86 l 86 (88)
T cd07694 86 L 86 (88)
T ss_pred E
Confidence 4
No 257
>PF07686 V-set: Immunoglobulin V-set domain; InterPro: IPR013106 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the V-set domains, which are Ig-like domains resembling the antibody variable domain. V-set domains are found in diverse protein families, including immunoglobulin light and heavy chains; in several T-cell receptors such as CD2 (Cluster of Differentiation 2), CD4, CD80, and CD86; in myelin membrane adhesion molecules; in junction adhesion molecules (JAM); in tyrosine-protein kinase receptors; and in the programmed cell death protein 1 (PD1).; PDB: 1PY9_A 2NXY_D 1U9K_B 3RNK_A 3BP6_A 3BIK_B 3SBW_A 1NPU_A 3BP5_A 3RNQ_A ....
Probab=98.24 E-value=6.4e-06 Score=67.85 Aligned_cols=83 Identities=30% Similarity=0.497 Sum_probs=57.5
Q ss_pred eeCCCceEEEcCCeEEEEEEEe-ccCCCeEEEEeCCc-----cCC---------------CCCeEEcc-----cceEEEc
Q psy15127 75 ISEPSDATVLSGSVVEFVCRVG-GDPLPTILWRRDDG-----KMP---------------TGRAKILD-----DRSLQIE 128 (633)
Q Consensus 75 ~~~~~~~~~~~G~~~~L~C~~~-~~p~p~i~W~~~~~-----~i~---------------~~~~~~~~-----~~~L~i~ 128 (633)
...|..+.+.+|+++.|.|... ......+.|++... .+. .++..... +.+|.|.
T Consensus 5 t~~~~~v~~~~G~~v~L~C~~~~~~~~~~v~W~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~i~ 84 (114)
T PF07686_consen 5 TQPPSPVTVQEGESVTLPCSYSSSSNQSSVYWYRQSPGQGPQLIIRYSLSSTNETPTPSYSGRFTFSGNGSQNNFSLTIK 84 (114)
T ss_dssp EEEESEEEEETTSEEEEEEEEESSSSGSEEEEEEEETTSEEEEEEEEETTEEEEEEETTETTTEEEEEETTTTEEEEEES
T ss_pred EEeCCeEEEecCCCEEEEEEEeCCCCcceEEEEEECccccceeeeeeccceeeeccccceeeeeeeeecccCCeEEEEEC
Confidence 3446788899999999999998 44556899999433 110 11222222 2369999
Q ss_pred cCCCCCCeEEEEEEEeCC-ceEEEEEEEEE
Q psy15127 129 NVGPQDEGLYICDVENLV-GSISLRASLTV 157 (633)
Q Consensus 129 ~v~~~d~G~Y~C~~~n~~-g~~s~~~~l~V 157 (633)
+++.+|+|.|.|.+.... ......+.|.|
T Consensus 85 ~l~~~DsG~Y~C~v~~~~~~~~~~~~~L~V 114 (114)
T PF07686_consen 85 NLQPSDSGTYFCQVSTSNEQSFGNGTKLTV 114 (114)
T ss_dssp SESGGGEEEEEEEEEESSEEEEEEEEEEEE
T ss_pred CCCcCcCEEEEEEEEECCCCEECCcEEEEC
Confidence 999999999999998762 23455555554
No 258
>cd04982 IgV_TCR_gamma Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) gamma chain. IgV_TCR_gamma: immunoglobulin (Ig) variable (V) domain of the gamma chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is
Probab=98.24 E-value=4.1e-06 Score=69.18 Aligned_cols=69 Identities=20% Similarity=0.346 Sum_probs=50.8
Q ss_pred eCCCceEEEcCCeEEEEEEEec--cCCCeEEEEeC--CccC------------------CCCCeEEc-----ccceEEEc
Q psy15127 76 SEPSDATVLSGSVVEFVCRVGG--DPLPTILWRRD--DGKM------------------PTGRAKIL-----DDRSLQIE 128 (633)
Q Consensus 76 ~~~~~~~~~~G~~~~L~C~~~~--~p~p~i~W~~~--~~~i------------------~~~~~~~~-----~~~~L~i~ 128 (633)
..|..+.+.+|++++|.|.+.+ .+.+.+.|||. +... ..+++... ....|+|.
T Consensus 3 Q~p~~~~~~~G~~v~l~C~~~~~~~~~~~v~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~ 82 (116)
T cd04982 3 QPQLSITREESKSVTISCKVSGIDFSTTYIHWYRQKPGQALERLLYVSSTSTQRKLSGGTKNKFEARKDVGKSTSTLTIQ 82 (116)
T ss_pred CcCCeEEeCCCCCEEEEEEEeCCCccccEEEEEEECCCCCCEEEEEEecCCCcEEeCcccCCCEEEEEECCCCEEEEEEE
Confidence 3567788999999999999976 56778999995 2211 01233322 12479999
Q ss_pred cCCCCCCeEEEEEEEe
Q psy15127 129 NVGPQDEGLYICDVEN 144 (633)
Q Consensus 129 ~v~~~d~G~Y~C~~~n 144 (633)
+++.+|+|.|.|.+..
T Consensus 83 ~~~~~Dsg~Y~C~~~~ 98 (116)
T cd04982 83 NLEKEDSATYYCAYWE 98 (116)
T ss_pred ECCHHHCEEEEEEEec
Confidence 9999999999999864
No 259
>cd00099 IgV Immunoglobulin variable domain (IgV). IgV: Immunoglobulin variable domain (IgV). Members of the IgV family are components of immunoglobulin (Ig) and T cell receptors. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. Within the variable domain, there are regions of even more variability called the hypervariable or complementarity-determining regions (CDRs) which are responsible for antigen binding. A predominant feature of most Ig domains is the disulfide bridge connecting 2 beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=98.23 E-value=3.8e-06 Score=68.06 Aligned_cols=66 Identities=27% Similarity=0.460 Sum_probs=48.5
Q ss_pred EEEcCCeEEEEEEEecc-CCCeEEEEeCCc--cC----------------CCCCeEEc-----ccceEEEccCCCCCCeE
Q psy15127 82 TVLSGSVVEFVCRVGGD-PLPTILWRRDDG--KM----------------PTGRAKIL-----DDRSLQIENVGPQDEGL 137 (633)
Q Consensus 82 ~~~~G~~~~L~C~~~~~-p~p~i~W~~~~~--~i----------------~~~~~~~~-----~~~~L~i~~v~~~d~G~ 137 (633)
.+.+|++++|.|.+.+. +...+.|+|... .. ..++.... .+.+|+|.+++.+|+|.
T Consensus 2 ~v~~G~~v~L~C~~~~~~~~~~v~W~k~~~~~~~~~i~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~I~~v~~~D~G~ 81 (105)
T cd00099 2 SVSEGESVTLSCTYSGSFSSYYIFWYRQKPGKGPELLIYISSNGSQYAGGVKGRFSGTRDSSKSSFTLTISSLQPEDSAV 81 (105)
T ss_pred eecCCCCEEEEEEEeCCcCcceEEEEEECCCCCCEEEEEEeCCCCccCccCCCcEEEEEeccCCEEEEEECCCCHHHCEE
Confidence 57899999999999875 566899999543 10 01222222 23489999999999999
Q ss_pred EEEEEEeCCc
Q psy15127 138 YICDVENLVG 147 (633)
Q Consensus 138 Y~C~~~n~~g 147 (633)
|.|.+.+..+
T Consensus 82 Y~C~v~~~~~ 91 (105)
T cd00099 82 YYCAVSLSGG 91 (105)
T ss_pred EEEEEecCCC
Confidence 9999987654
No 260
>cd05714 Ig_CSPGs_LP Immunoglobulin (Ig)-like domain of chondroitin sulfate proteoglycans (CSPGs), human cartilage link protein (LP) and similar proteins. Ig_CSPGs_LP: immunoglobulin (Ig)-like domain similar to that found in chondroitin sulfate proteoglycans (CSPGs) and human cartilage link protein (LP). Included in this group are the CSPGs aggrecan, versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue.
Probab=98.23 E-value=1.2e-05 Score=65.18 Aligned_cols=81 Identities=22% Similarity=0.311 Sum_probs=56.9
Q ss_pred CCceEEEEEEEeeec------CCeeEEEECC-----E-EEEeccCC------cc-ceEEE----ccCceEEEcCCCCCCC
Q psy15127 254 HPRVNRLSCFAEGSP------LPSVFWTQEG-----S-QVLMFPGN------AY-GHLHV----TQEGTLRIQGVQKEDA 310 (633)
Q Consensus 254 ~g~~~~l~C~~~g~p------~~~v~W~~~g-----~-~~~~~~~~------~~-~~~~~----~~~~~l~i~~~~~~d~ 310 (633)
.|++++|.|.....+ ...|.|++.. . .+...... .+ .++.. ..+.+|.|.+++.+|+
T Consensus 1 ~G~~V~L~C~~~~~~~~~~~~~~~i~W~k~~~~~~~~~~v~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~~v~~sD~ 80 (106)
T cd05714 1 LGGNVTLPCRFHLEPALSAPHGPRIKWTKLESDGAKEVDVLVAIGGRVKVYGSGRVRVPLYPADPGDASLVITDLRLEDS 80 (106)
T ss_pred CCCCEEEeEEeECCcccCCCCCcEEEEEEeCCCCCceEEEEEEcCCEEEEcCCCceEEEeeCCCCCcceEEECCCCHHHC
Confidence 478999999987764 4689999862 1 11111110 11 12222 1345899999999999
Q ss_pred eEEEEEEEeCCceeEEEEEEEEEe
Q psy15127 311 GFFVCSALSVAGSTTVRAFLQVRE 334 (633)
Q Consensus 311 G~Y~C~a~n~~g~~~~~~~l~v~~ 334 (633)
|.|.|.+.+..+..+..+.|.|..
T Consensus 81 G~Y~C~v~~~~~~~~~~v~L~V~~ 104 (106)
T cd05714 81 GRYRCEVIDGIEDEQDTVELEVRG 104 (106)
T ss_pred EEEEEEEEcCCCceEEEEEEEEEE
Confidence 999999999888888888888874
No 261
>cd05715 Ig_P0-like Immunoglobulin (Ig)-like domain of Protein zero (P0) and similar proteins. Ig_P0ex-like: domain similar to the immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an extracellular Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin. This group also contains the Ig domain of Sodium channel subunit beta-2
Probab=98.21 E-value=1.3e-05 Score=66.00 Aligned_cols=71 Identities=27% Similarity=0.500 Sum_probs=49.2
Q ss_pred CCCceEEEcCCeEEEEEEEeccC----CCeEEEEeCCc------cC-----------CCC----CeEEcc-----cceEE
Q psy15127 77 EPSDATVLSGSVVEFVCRVGGDP----LPTILWRRDDG------KM-----------PTG----RAKILD-----DRSLQ 126 (633)
Q Consensus 77 ~~~~~~~~~G~~~~L~C~~~~~p----~p~i~W~~~~~------~i-----------~~~----~~~~~~-----~~~L~ 126 (633)
.|..+.+.+|++++|.|...... ...+.|++... .+ ..+ |..... +.+|+
T Consensus 4 ~p~~v~v~~G~~vtL~C~~s~~~~~~~~~~v~W~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~ 83 (116)
T cd05715 4 TPREVYAVNGSDVRLKCTFSSSEPISDDISVTWSFQPEGSGDTESIFHYHKGPYYPLKDGRFKDRVEWVGNPSRKDASIV 83 (116)
T ss_pred cCCeEEEEcCCCeEEEeEEeCCCCcCCceEEEEEEecCCCCCcEEEEEEcCCccccccCccccCcEEEecCCcCCeeEEE
Confidence 46778899999999999986432 24699987321 00 011 111111 35799
Q ss_pred EccCCCCCCeEEEEEEEeCCc
Q psy15127 127 IENVGPQDEGLYICDVENLVG 147 (633)
Q Consensus 127 i~~v~~~d~G~Y~C~~~n~~g 147 (633)
|.+++.+|+|.|.|.+.+...
T Consensus 84 I~~v~~~D~G~Y~C~v~~~~~ 104 (116)
T cd05715 84 IHNLQFTDNGTYTCDVKNPPD 104 (116)
T ss_pred EeeCCcccCEEEEEEEEeCCC
Confidence 999999999999999987643
No 262
>cd05877 Ig_LP_like Immunoglobulin (Ig)-like domain of human cartilage link protein (LP). Ig_LP_like: immunoglobulin (Ig)-like domain similar to that that found in human cartilage link protein (LP). In cartilage, chondroitin-keratan sulfate proteoglycan (CSPG), aggrecan, forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes.
Probab=98.21 E-value=2e-05 Score=63.85 Aligned_cols=81 Identities=25% Similarity=0.348 Sum_probs=57.6
Q ss_pred CCceEEEEEEEeeec------CCeeEEEECCE------EEEecc-------CCccceEEEc----cCceEEEcCCCCCCC
Q psy15127 254 HPRVNRLSCFAEGSP------LPSVFWTQEGS------QVLMFP-------GNAYGHLHVT----QEGTLRIQGVQKEDA 310 (633)
Q Consensus 254 ~g~~~~l~C~~~g~p------~~~v~W~~~g~------~~~~~~-------~~~~~~~~~~----~~~~l~i~~~~~~d~ 310 (633)
+|++++|.|.....| ...+.|+|... .+.... ..-..|.... .+.+|.|.+++.+|+
T Consensus 1 ~G~~vtL~C~~~~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~sL~I~~v~~~Ds 80 (106)
T cd05877 1 RGGNVTLPCRYHYEPELSAPRKIRVKWTKLESDYLKEEDVLVAIGTRHKSYGSYQGRVFLRRAHDLDASLVITDLRLEDY 80 (106)
T ss_pred CCCcEEEEeEeECCCcCCCCccceEEEEEecCCCCeeEEEEEEcCcEEEeccCccCcEEecCCCCCcEEEEEccCChHHC
Confidence 478999999987664 24799998531 111111 0111344442 234799999999999
Q ss_pred eEEEEEEEeCCceeEEEEEEEEEe
Q psy15127 311 GFFVCSALSVAGSTTVRAFLQVRE 334 (633)
Q Consensus 311 G~Y~C~a~n~~g~~~~~~~l~v~~ 334 (633)
|.|.|.+.+..+..+..+.|.|..
T Consensus 81 G~Y~C~v~~~~~~~~~~~~l~v~~ 104 (106)
T cd05877 81 GRYRCEVIDGLEDESVVVALRLRG 104 (106)
T ss_pred EEEEEEEEecccceEEEEEEEEEE
Confidence 999999999999888888888864
No 263
>cd05902 Ig_Neurocan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan. Ig_Neurocan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Unlike aggrecan which is widely distributed in connective tissue and extracellular matrices, neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many differen
Probab=98.20 E-value=8.5e-06 Score=65.54 Aligned_cols=74 Identities=24% Similarity=0.315 Sum_probs=52.9
Q ss_pred CCeEEEEEEEeccC-------CCeEEEEeCC-----ccC-----C----------CCCeEEc------ccceEEEccCCC
Q psy15127 86 GSVVEFVCRVGGDP-------LPTILWRRDD-----GKM-----P----------TGRAKIL------DDRSLQIENVGP 132 (633)
Q Consensus 86 G~~~~L~C~~~~~p-------~p~i~W~~~~-----~~i-----~----------~~~~~~~------~~~~L~i~~v~~ 132 (633)
|++++|.|...-.| .+.|.|.|.. ..+ . .+|..+. .+.+|.|.+++.
T Consensus 2 ~~~v~LpC~~~~~p~~~~~~~~~~I~W~k~~~~~~~~~~~v~v~~~~~~~~~~~y~gRvsl~~~~~~~~~asL~i~nv~~ 81 (110)
T cd05902 2 SSSVLLPCVFTLPPSASSPPEGPRIKWTKLRPASGQKQRPVLVARDNVVRVAKAFQGRVSLPGYPKNRYNASLVLSRLRY 81 (110)
T ss_pred CCcEEEeeEEEcCccccCCCCCCEEEEEEeCCCCCceEEEEEECCCCcEEEchhcccEEEeecCCCCCceEEEEECCCCH
Confidence 78999999975322 3689999852 111 0 1233332 245899999999
Q ss_pred CCCeEEEEEEEeCCceEEEEEEEEEEe
Q psy15127 133 QDEGLYICDVENLVGSISLRASLTVHL 159 (633)
Q Consensus 133 ~d~G~Y~C~~~n~~g~~s~~~~l~V~~ 159 (633)
+|+|.|.|.+.......+..+.|.|..
T Consensus 82 ~D~G~Y~C~v~~g~~~~~~~v~L~V~g 108 (110)
T cd05902 82 SDSGTYRCEVVLGINDEQDTVPLEVTG 108 (110)
T ss_pred HHCEEEEEEEEECCcccEEEEEEEEEE
Confidence 999999999998665678888888875
No 264
>cd05883 Ig2_Necl-2 Second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Ig2_Necl-2: second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Nectin-like molecules (Necls) have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is expressed in a wide variety of tissues, and is a putative tumour suppressor gene, which is downregulated in aggressive neuroblastoma. Ig domains are likely to participate in ligand binding and recognition.
Probab=98.17 E-value=1.4e-05 Score=59.93 Aligned_cols=71 Identities=18% Similarity=0.295 Sum_probs=51.7
Q ss_pred EEEEEEEec-cCCCeEEEEeCCccCCCCCeE-------EcccceEEEccCCCCCCeEEEEEEEeCCce-EEEEEEEEEEe
Q psy15127 89 VEFVCRVGG-DPLPTILWRRDDGKMPTGRAK-------ILDDRSLQIENVGPQDEGLYICDVENLVGS-ISLRASLTVHL 159 (633)
Q Consensus 89 ~~L~C~~~~-~p~p~i~W~~~~~~i~~~~~~-------~~~~~~L~i~~v~~~d~G~Y~C~~~n~~g~-~s~~~~l~V~~ 159 (633)
+.|.|.+.| .|.+.|+|+|++.++...... ....++|.|..-..+|...|+|+|.|..-. ......|.|..
T Consensus 2 ~~L~C~s~gSkP~A~I~W~k~~~~l~~~~~~~~~~~~~~t~~S~L~~~p~~eDdG~~~~C~a~~~~l~~~~~~~~L~V~y 81 (82)
T cd05883 2 IELNCTAMASKPAATIRWFKGNKELTGKSTVEETWSRMFTVTSQLMLKVTKEDDGVPVICLVDHPAVKDLQTQRYLEVQY 81 (82)
T ss_pred EEEEEEecCCCCCCEEEEEECCEECcCcccceeccCCCcEEEEEEEEECchhhCCCEEEEEEcCcccCCceeeEEEEEEE
Confidence 689999964 688899999999988653221 112357888777788888999999886533 45666666653
No 265
>PHA02987 Ig domain OX-2-like protein; Provisional
Probab=98.17 E-value=1.3e-05 Score=68.92 Aligned_cols=81 Identities=21% Similarity=0.330 Sum_probs=60.4
Q ss_pred ceEEEcCCeEEEEEEEe-ccCCCeEEEEeCCccCC-------------CCCeEEc----ccceEEEccCCCCCCeEEEEE
Q psy15127 80 DATVLSGSVVEFVCRVG-GDPLPTILWRRDDGKMP-------------TGRAKIL----DDRSLQIENVGPQDEGLYICD 141 (633)
Q Consensus 80 ~~~~~~G~~~~L~C~~~-~~p~p~i~W~~~~~~i~-------------~~~~~~~----~~~~L~i~~v~~~d~G~Y~C~ 141 (633)
.+.+.+|++++|.|... +...+.+.|+|..+.+. .+|.... .+..|+|.+|+.+|+|.|.|.
T Consensus 24 ~v~V~ege~VtLsCs~t~s~~~~qVtWkK~~~~IatY~~~g~~i~~~Fk~Rve~mS~s~~~StItIknVt~sDeGcY~C~ 103 (189)
T PHA02987 24 KITVSEHVNVKISCNKTSSFNSILITWKKNNKTIAGYGPCGPVIVDKFKNKIEYLSKSFNESTILIKNVSLKDNGCYTCI 103 (189)
T ss_pred EEEEcCCCCEEEEEecCCCCccceEEEEEcCCCEEEEecCCcEEChhhcCeEEEeccCCCcceEEEEeCChhhCeEEEEE
Confidence 46789999999999984 55677899999754331 1222221 346899999999999999999
Q ss_pred EEeC-Cc-eEEEEEEEEEEee
Q psy15127 142 VENL-VG-SISLRASLTVHLL 160 (633)
Q Consensus 142 ~~n~-~g-~~s~~~~l~V~~~ 160 (633)
+... .| ..+..+-|+|...
T Consensus 104 F~tfp~G~~~~gt~CLtVt~~ 124 (189)
T PHA02987 104 FNTLLSKNNEKGVVCLNVTTD 124 (189)
T ss_pred EEecCCCCCceeEEEEEEEch
Confidence 8643 45 5677778888865
No 266
>cd05713 Ig_MOG_like Immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG). Ig_MOG_like: immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG). MOG, a minor component of the myelin sheath, is an important CNS-specific autoantigen, linked to the pathogenesis of multiple sclerosis (MS) and experimental autoimmune encephalomyelitis (EAE). It is a transmembrane protein having an extracellular Ig domain. MOG is expressed in the CNS on the outermost lamellae of the myelin sheath, and on the surface of oligodendrocytes, and may participate in the completion, compaction, and/or maintenance of myelin. This group also includes butyrophilin (BTN). BTN is the most abundant protein in bovine milk-fat globule membrane (MFGM).
Probab=98.15 E-value=1.7e-05 Score=63.44 Aligned_cols=78 Identities=22% Similarity=0.305 Sum_probs=51.7
Q ss_pred CceEEEEEEEeeecC---CeeEEEECCE--EEEeccC---------Ccc-ceEEEc------cCceEEEcCCCCCCCeEE
Q psy15127 255 PRVNRLSCFAEGSPL---PSVFWTQEGS--QVLMFPG---------NAY-GHLHVT------QEGTLRIQGVQKEDAGFF 313 (633)
Q Consensus 255 g~~~~l~C~~~g~p~---~~v~W~~~g~--~~~~~~~---------~~~-~~~~~~------~~~~l~i~~~~~~d~G~Y 313 (633)
|++++|.|....... ..+.|++... .+..... ..+ .|+.+. .+.+|.|.+++.+|+|.|
T Consensus 1 G~~v~L~C~~~~~~~~~~~~v~W~k~~~~~~v~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y 80 (100)
T cd05713 1 GEDAELPCHLSPKMSAEHMEVRWFRSQFSPAVHLYRDGQDQYGEQMPEYRGRTELLKDAIAEGSVALRIHNVRASDEGLY 80 (100)
T ss_pred CCcEEEEeEEcCCCCCCeeEEEEEECCCceeEEEEcCCcccccccCccccceEEeecccccCCcEEEEEEcCChhhCEEE
Confidence 578999999863322 3688887542 1111100 011 344432 234799999999999999
Q ss_pred EEEEEeCCceeEEEEEEEE
Q psy15127 314 VCSALSVAGSTTVRAFLQV 332 (633)
Q Consensus 314 ~C~a~n~~g~~~~~~~l~v 332 (633)
.|.+.+..+..+..+.|.|
T Consensus 81 ~C~v~~~~~~~~~~i~l~v 99 (100)
T cd05713 81 TCFFQSDGFYEEATVELKV 99 (100)
T ss_pred EEEEecCCcEEEEEEEEEE
Confidence 9999998887777777765
No 267
>cd05888 Ig1_Nectin-4_like Frst immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor) and similar proteins. Ig1_Nectin-4_like: domain similar to the first immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor). Nectin-4 belongs to the nectin family, which is comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example nectin-4 trans-interacts with nectin-1. Nectin-4 has also been shown to interact with the actin filament-binding protein, afadin. Unlike the other nectins, which are widely expressed in adult tissues, nectin-4 is mainly expressed during embryogenesis, and is not detected in normal adult
Probab=98.15 E-value=2.2e-05 Score=62.56 Aligned_cols=70 Identities=29% Similarity=0.490 Sum_probs=48.6
Q ss_pred eEEEEEEEeccC---CCeEEEEeCCcc-----C----C----------CCCeEEc-----ccceEEEccCCCCCCeEEEE
Q psy15127 88 VVEFVCRVGGDP---LPTILWRRDDGK-----M----P----------TGRAKIL-----DDRSLQIENVGPQDEGLYIC 140 (633)
Q Consensus 88 ~~~L~C~~~~~p---~p~i~W~~~~~~-----i----~----------~~~~~~~-----~~~~L~i~~v~~~d~G~Y~C 140 (633)
+++|.|...... ...|.|+|.... + . .+|..+. .+.+|+|.+++.+|+|.|.|
T Consensus 2 ~v~L~C~~~~~~~~~~~~v~W~k~~~~~~~~~i~~~~~~~~~~~~~~~~~Rv~f~~~~~~~~~sL~I~nv~~sD~GtY~C 81 (100)
T cd05888 2 DTRLPCRYNVSDGETVVQVLWIRENAGGVEEEIALLHFKYGQTEFHAYEGRVRFETPNPIADGALILRNAVQADEGKYKC 81 (100)
T ss_pred CEEEEeEEecCCCCcEEEEEEEEccCCCCcEEEEEEeccCCcccCCCccCcEEEeCCCCCCceEEEEecCccccceEEEE
Confidence 689999986433 337999994311 1 0 0222222 24689999999999999999
Q ss_pred EEEe-CCceEEEEEEEEE
Q psy15127 141 DVEN-LVGSISLRASLTV 157 (633)
Q Consensus 141 ~~~n-~~g~~s~~~~l~V 157 (633)
.+.+ ..|..+..+.|.|
T Consensus 82 ~v~~~p~g~~~~~~~L~V 99 (100)
T cd05888 82 RVITFPAGNFEAELVLTV 99 (100)
T ss_pred EEEeCCCCCeeeEEEEEe
Confidence 9997 4566677777766
No 268
>cd05846 Ig1_MRC-OX-2_like First immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200) and similar proteins. Ig1_ MRC-OX-2_like: domain similar to the first immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200). MRC OX-2 is a membrane glycoprotein expressed in a variety of lymphoid and non-lymphoid cells in rats. It has a similar broad distribution pattern in humans. MRC OX-2 may regulate myeloid cell activity. The protein has an extracellular portion containing two Ig-like domains, a transmembrane portion, and a cytoplasmic portion.
Probab=98.13 E-value=1.8e-05 Score=62.71 Aligned_cols=72 Identities=31% Similarity=0.418 Sum_probs=49.7
Q ss_pred CCeEEEEEEEeccCC-CeEEEEeCCcc----C----C----------CCCeEEc----ccceEEEccCCCCCCeEEEEEE
Q psy15127 86 GSVVEFVCRVGGDPL-PTILWRRDDGK----M----P----------TGRAKIL----DDRSLQIENVGPQDEGLYICDV 142 (633)
Q Consensus 86 G~~~~L~C~~~~~p~-p~i~W~~~~~~----i----~----------~~~~~~~----~~~~L~i~~v~~~d~G~Y~C~~ 142 (633)
|++++|.|....... -.|.|+|.... + . .++.... .+.+|+|.+++.+|+|.|.|.+
T Consensus 1 G~~vtL~C~~~~~~~~~~v~W~k~~~~~~~~i~~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~nv~~~D~G~Y~C~~ 80 (97)
T cd05846 1 GGNVTLSCNLTLPEEVLQVTWQKIQGSSPENIATYSEKYGVKIQPSYFRRRSITSLGLNSTSITIWNVTLEDEGCYKCIF 80 (97)
T ss_pred CCcEEEEEEeCCCCeeEEEEEEEcCCCCceEEEEEcccCCcccCCCccCeEEEcCCCCCccEEEEeCCceeeeEEEEEEE
Confidence 789999998754332 26999985321 0 0 1121221 2457999999999999999998
Q ss_pred Ee-CCceEEEEEEEEE
Q psy15127 143 EN-LVGSISLRASLTV 157 (633)
Q Consensus 143 ~n-~~g~~s~~~~l~V 157 (633)
.. ..|..+..+-|+|
T Consensus 81 ~~~p~g~~~~~~~L~v 96 (97)
T cd05846 81 NTFPDGSKSGTMCLTV 96 (97)
T ss_pred EeCCCCCeeeEEEEEE
Confidence 74 4566777777776
No 269
>cd05887 Ig1_Nectin-3_like First immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3) and similar proteins. Ig1_Nectin-3_like: domain similar to the first immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3). Nectin-3 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example, during spermatid development, the nectin-3,-2 trans-interaction is required for the formation of Sertoli cell-spermatid junctions in testis, and during morphogenesis of the ciliary body, the nectin-3,-1 trans-interaction is important for apex-apex adhesion between the pigment and non-pigment layers of the ciliary epithelia. Nectins also
Probab=98.13 E-value=3.1e-05 Score=60.44 Aligned_cols=72 Identities=29% Similarity=0.571 Sum_probs=50.2
Q ss_pred CeEEEEEEEecc-CCCeEEEEeCCc----cCC--------------CCCeEE----cccceEEEccCCCCCCeEEEEEEE
Q psy15127 87 SVVEFVCRVGGD-PLPTILWRRDDG----KMP--------------TGRAKI----LDDRSLQIENVGPQDEGLYICDVE 143 (633)
Q Consensus 87 ~~~~L~C~~~~~-p~p~i~W~~~~~----~i~--------------~~~~~~----~~~~~L~i~~v~~~d~G~Y~C~~~ 143 (633)
++++|.|..... ....|+|.|... .+. .+|... ..+.+|.|.+++.+|+|.|.|.+.
T Consensus 1 ~~vtL~C~~~~~~~~~qV~W~k~~~~~~~~ia~y~~~~g~~~~~~y~~Rv~~~~~~~~d~sl~i~nv~~~D~G~Y~C~v~ 80 (96)
T cd05887 1 KNVTLKCRIQVNETITQSSWEKIHGKGSVTLAVHHPMYGISIQPDYQGRVSFKNYSLLDATIMLENVGFSDIGVYICKAV 80 (96)
T ss_pred CCEEEEEEecCCCcEEEEEEEEcCCCCcEEEEEEcccCCcccChhhCCcEEEcCCCCCccEEEEeCCCccccEEEEEEEE
Confidence 368999998643 233699988421 110 122222 125799999999999999999987
Q ss_pred e-CCceEEEEEEEEEE
Q psy15127 144 N-LVGSISLRASLTVH 158 (633)
Q Consensus 144 n-~~g~~s~~~~l~V~ 158 (633)
+ ..|+.++.+.|.|.
T Consensus 81 tfP~G~~~~~~~l~~~ 96 (96)
T cd05887 81 TFPLGNTQSSTTVTVL 96 (96)
T ss_pred eCCCCCeeEEEEEEEC
Confidence 5 46778888888773
No 270
>cd05900 Ig_Aggrecan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan. Ig_Aggrecan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan. These aggregates contribute to the tissue's load bearing properties. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Aggrecan has a wide distribution in connective tissue and extracellular matrices. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes.
Probab=98.11 E-value=3.5e-05 Score=62.31 Aligned_cols=80 Identities=16% Similarity=0.346 Sum_probs=56.4
Q ss_pred CceEEEEEEEeeec------------CCeeEEEEC--CE--EEEe-cc-----CCcc-ceEEEc------cCceEEEcCC
Q psy15127 255 PRVNRLSCFAEGSP------------LPSVFWTQE--GS--QVLM-FP-----GNAY-GHLHVT------QEGTLRIQGV 305 (633)
Q Consensus 255 g~~~~l~C~~~g~p------------~~~v~W~~~--g~--~~~~-~~-----~~~~-~~~~~~------~~~~l~i~~~ 305 (633)
|++++|.|...... .+.|.|+|- |. .+.. .. ...+ .|..+. .+.+|.|.++
T Consensus 2 G~~VtLpC~~~~~~~~~~~~~~~~~~~~~I~W~k~~~g~~~~ii~~~~~~~~~~~~f~~R~sl~~~~~~~~~asL~I~nl 81 (112)
T cd05900 2 GSSLLIPCYFQDPIAKDPGAPTVAPLSPRIKWSFISKEKESVLLVATEGKVRVNTEYLDRVSLPNYPAIPSDATLEITEL 81 (112)
T ss_pred CCcEEEeeEEeCCcCccccccccCCCCCEEEEEEecCCCccEEEEEECCeEEECccccCeEEecccCCCCCCcEEEEeec
Confidence 78999999987543 358999984 21 1110 00 0112 355543 3558999999
Q ss_pred CCCCCeEEEEEEEeCCceeEEEEEEEEEe
Q psy15127 306 QKEDAGFFVCSALSVAGSTTVRAFLQVRE 334 (633)
Q Consensus 306 ~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~ 334 (633)
+..|+|.|.|.+.......+..+.|.|..
T Consensus 82 ~~sDsG~Y~C~V~~g~~~~~~~v~l~v~g 110 (112)
T cd05900 82 RSNDSGTYRCEVMHGIEDNYDTVEVQVKG 110 (112)
T ss_pred ccccCEEEEEEEecCCCCceeEEEEEEEe
Confidence 99999999999998878888888888764
No 271
>cd00063 FN3 Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all animal proteins contain the FN3 repeat; including extracellular and intracellular proteins, membrane spanning cytokine receptors, growth hormone receptors, tyrosine phosphatase receptors, and adhesion molecules. FN3-like domains are also found in bacterial glycosyl hydrolases.
Probab=98.11 E-value=1.2e-05 Score=62.90 Aligned_cols=79 Identities=28% Similarity=0.394 Sum_probs=57.4
Q ss_pred eeeecccceEEEEEEEecCCCcccccchhhhhcceeEEEEEEcCCCcccceeeeeeccceeEeecCCccceEEeeccccc
Q psy15127 534 ELIPTASTAVRITWEVSWGSVPQHLLDEARARLGTKVVNLRELIPTASTAVRITWEKYNMATVMNAATTTSYTVTHLRKF 613 (633)
Q Consensus 534 ~~~~~~~~si~v~W~~p~~~~p~~~~~~~~~i~~y~~i~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~i~~L~~~ 613 (633)
++......++.|.|+.| ....+.+.+| .+.|...... .|...... ......+.|.+|.|+
T Consensus 8 ~~~~~~~~~~~v~W~~~--------~~~~~~~~~y-~v~~~~~~~~-------~~~~~~~~----~~~~~~~~i~~l~p~ 67 (93)
T cd00063 8 RVTDVTSTSVTLSWTPP--------EDDGGPITGY-VVEYREKGSG-------DWKEVEVT----PGSETSYTLTGLKPG 67 (93)
T ss_pred EEEEecCCEEEEEECCC--------CCCCCcceeE-EEEEeeCCCC-------CCEEeecc----CCcccEEEEccccCC
Confidence 45566689999999954 1222678899 8888876422 24322211 035788999999999
Q ss_pred eeEEEEEeccccccccccC
Q psy15127 614 TKYEFFLVPFFKTVEGARL 632 (633)
Q Consensus 614 t~Y~~~v~a~n~~g~g~~s 632 (633)
+.|.|+|+|.+..|.|.+|
T Consensus 68 ~~Y~~~v~a~~~~~~~~~s 86 (93)
T cd00063 68 TEYEFRVRAVNGGGESPPS 86 (93)
T ss_pred CEEEEEEEEECCCccCCCc
Confidence 9999999999988888765
No 272
>cd05901 Ig_Versican Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican. Ig_Versican: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Like aggrecan, versican has a wide distribution in connective tissue and extracellular matrices. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA
Probab=98.10 E-value=4e-05 Score=61.74 Aligned_cols=74 Identities=27% Similarity=0.420 Sum_probs=53.8
Q ss_pred CCeEEEEEEEeccC-----------CCeEEEEeC-----CccCC------------------CCCeEEc------ccceE
Q psy15127 86 GSVVEFVCRVGGDP-----------LPTILWRRD-----DGKMP------------------TGRAKIL------DDRSL 125 (633)
Q Consensus 86 G~~~~L~C~~~~~p-----------~p~i~W~~~-----~~~i~------------------~~~~~~~------~~~~L 125 (633)
|.+++|.|.+.-.| .+.|.|++- +.... .+|..+. .+.+|
T Consensus 2 ~g~v~LPC~f~~~p~~p~~~~~~~~~~rIkW~~~~~~~~g~~~~e~~Vlv~~~g~~~~~~~y~gRv~l~~~~~~~g~asL 81 (117)
T cd05901 2 SGSVVLPCRFSTLPTLPPSVITTSEFLRIKWTKIEVDKNGKDHKETTVLVAQNGIIKIGQEYMGRVSVPSHPEDQGDASL 81 (117)
T ss_pred CCCEEEeeEEEecCCCCCcccCCCCCcEEEEEEecccccccCCCccEEEEEECCEEEECCcccCcEEeeccCCcCCceEE
Confidence 67899999997433 237999884 11110 1233332 24689
Q ss_pred EEccCCCCCCeEEEEEEEeCCceEEEEEEEEEEe
Q psy15127 126 QIENVGPQDEGLYICDVENLVGSISLRASLTVHL 159 (633)
Q Consensus 126 ~i~~v~~~d~G~Y~C~~~n~~g~~s~~~~l~V~~ 159 (633)
.|.+++.+|+|.|.|.+..........+.|.|..
T Consensus 82 ~i~~v~~sD~G~Y~C~V~~g~~~~~~~v~L~V~G 115 (117)
T cd05901 82 TIVKLRASDAGVYRCEVMHGIEDTQDTVSLDVSG 115 (117)
T ss_pred EEcccccccCEEEEEEEEECCcccEEEEEEEEEE
Confidence 9999999999999999998877788888888875
No 273
>cd05879 Ig_P0 Immunoglobulin (Ig)-like domain of Protein zero (P0). Ig_P0ex: immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin.
Probab=98.09 E-value=4e-05 Score=62.46 Aligned_cols=77 Identities=18% Similarity=0.201 Sum_probs=50.7
Q ss_pred eeEEecCCceEEEEEEEeeec----CCeeEEEE---------------CCEEEEeccCCccceEEE-----ccCceEEEc
Q psy15127 248 SLLIWNHPRVNRLSCFAEGSP----LPSVFWTQ---------------EGSQVLMFPGNAYGHLHV-----TQEGTLRIQ 303 (633)
Q Consensus 248 ~~~~~~~g~~~~l~C~~~g~p----~~~v~W~~---------------~g~~~~~~~~~~~~~~~~-----~~~~~l~i~ 303 (633)
..+....|+.++|.|...... ...+.|.+ +|.......+.-..|+.. ..+.+|.|.
T Consensus 6 ~ev~a~~G~~v~L~C~f~~~~~~~~~~~v~W~~~~~~~~~~~~v~~y~~g~~~~~~~~~f~~Rv~f~g~~~~~daSI~I~ 85 (116)
T cd05879 6 REVYGTVGSDVTLSCSFWSSEWISDDISFTWHYQPDGSRDAISIFHYGKGQPYIDDVGPFKERIEWVGNPSRKDGSIVIH 85 (116)
T ss_pred ceEEEEcCCcEEEEEEEecCCCCCCcEEEEEEEcCCCCCccEEEEEeCCCceecccccCccCceEEeCCCCcCeeEEEEc
Confidence 345666789999999997643 35899944 222221000111124443 244589999
Q ss_pred CCCCCCCeEEEEEEEeCCcee
Q psy15127 304 GVQKEDAGFFVCSALSVAGST 324 (633)
Q Consensus 304 ~~~~~d~G~Y~C~a~n~~g~~ 324 (633)
+++..|.|.|+|.+.|.-+..
T Consensus 86 nv~~sD~G~Y~C~v~n~p~~~ 106 (116)
T cd05879 86 NLDYTDNGTFTCDVKNPPDIV 106 (116)
T ss_pred cCCcccCEEEEEEEEcCCCcC
Confidence 999999999999999976543
No 274
>cd00063 FN3 Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all animal proteins contain the FN3 repeat; including extracellular and intracellular proteins, membrane spanning cytokine receptors, growth hormone receptors, tyrosine phosphatase receptors, and adhesion molecules. FN3-like domains are also found in bacterial glycosyl hydrolases.
Probab=98.08 E-value=6e-05 Score=58.92 Aligned_cols=84 Identities=39% Similarity=0.598 Sum_probs=63.4
Q ss_pred CCCCcEEEEeeCCeEEEEeCCCCCCCCCCcceeEEEEEEEEecCCCCeEEEEEe-eeeceEEEecCCCCCeEEEEEEEEe
Q psy15127 412 PPAAPVILNTTRGSVTLGWGEPEPRGGGVAPVIGYTVEYFSSDLQTGWVVAAHR-ITSTSITVSDLKPDTSYMFIVRAEN 490 (633)
Q Consensus 412 ~p~~~~~~~~~~~~i~l~W~~~~~~~~~~~~i~~Y~v~~~~~~~~~~~~~~~~~-~~~~~~~i~~L~p~~~Y~~~v~a~n 490 (633)
+|..+........++.|+|.++... .+.+..|.|.+...+ ...|...... .....+.|.+|.|++.|.++|+|.+
T Consensus 3 ~p~~~~~~~~~~~~~~v~W~~~~~~---~~~~~~y~v~~~~~~-~~~~~~~~~~~~~~~~~~i~~l~p~~~Y~~~v~a~~ 78 (93)
T cd00063 3 PPTNLRVTDVTSTSVTLSWTPPEDD---GGPITGYVVEYREKG-SGDWKEVEVTPGSETSYTLTGLKPGTEYEFRVRAVN 78 (93)
T ss_pred CCCCcEEEEecCCEEEEEECCCCCC---CCcceeEEEEEeeCC-CCCCEEeeccCCcccEEEEccccCCCEEEEEEEEEC
Confidence 4555666666689999999998743 246788999998765 3445543332 2567899999999999999999999
Q ss_pred ccccCCCCC
Q psy15127 491 SHGLGIPSP 499 (633)
Q Consensus 491 ~~G~g~~s~ 499 (633)
..|.|.++.
T Consensus 79 ~~~~~~~s~ 87 (93)
T cd00063 79 GGGESPPSE 87 (93)
T ss_pred CCccCCCcc
Confidence 988887665
No 275
>cd05751 Ig1_LILRB1_like First immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1) and similar proteins. Ig1_LILRB1_like: domain similar to the first immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1). This group includes, LILRA5 (LIR9), an activating natural cytotoxicity receptor NKp46, and the immune-type receptor glycoprotein VI (GPVI). LILRs are a family of immunoreceptors expressed on expressed on T and B cells, on monocytes, dendritic cells, and subgroups of natural killer (NK) cells. The human LILR family contains nine proteins (LILRA1-3,and 5, and LILRB1-5). From functional assays, and as the cytoplasmic domains of various LILRs, for example LILRB1 (LIR-1), LILRB2 (LIR-2), and LILRB3 (LIR-3) contain immunoreceptor tyrosine-based inhibitory motifs (ITIMs) it is thought that LIR proteins are inhibitory receptors. Of the eight LIR family proteins, only LIR-1(LILRB1), and LIR-2 (LILRB2),
Probab=98.04 E-value=7.8e-06 Score=63.89 Aligned_cols=65 Identities=17% Similarity=0.135 Sum_probs=48.6
Q ss_pred EEecCCceEEEEEEEeeecCCeeEEEECCEEEEeccCCccceEEEccCceEEEcCCCCCCCeEEEEEEEeC
Q psy15127 250 LIWNHPRVNRLSCFAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSV 320 (633)
Q Consensus 250 ~~~~~g~~~~l~C~~~g~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~ 320 (633)
.++.+|+.|+|.|... .+...+.|+++|....... .......+.|.|.+++.+|+|.|+|...+.
T Consensus 11 ~vV~~G~~VtL~C~~~-~~~~~f~l~k~g~~~~~~~-----~~~~~~~~~f~i~~v~~~~~G~Y~C~~~~~ 75 (91)
T cd05751 11 SVVPLGKPVTLRCQGP-YGAVEYRLYREGSTFAVKK-----PPEPQNKAKFFIPSMKREHAGRYRCYYRSG 75 (91)
T ss_pred CccCCCCcEEEEEecC-CCCCEEEEEECCCCccccc-----cCCCceeEEEEccCCChhHCEEEEEEEECC
Confidence 3567899999999885 6677899999987543100 001123447999999999999999999886
No 276
>cd05878 Ig_Aggrecan_like Immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG). Ig_Aggrecan_like: immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG)s. Included in this group are the Ig domains of other CSPGs: versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substi
Probab=98.04 E-value=6.5e-05 Score=60.92 Aligned_cols=80 Identities=21% Similarity=0.465 Sum_probs=55.9
Q ss_pred CceEEEEEEEeeec----------CCeeEEEEC--CEEEEec--c------CCcc-ceEEEc------cCceEEEcCCCC
Q psy15127 255 PRVNRLSCFAEGSP----------LPSVFWTQE--GSQVLMF--P------GNAY-GHLHVT------QEGTLRIQGVQK 307 (633)
Q Consensus 255 g~~~~l~C~~~g~p----------~~~v~W~~~--g~~~~~~--~------~~~~-~~~~~~------~~~~l~i~~~~~ 307 (633)
|++++|.|.....+ ...+.|++. +...... . ...+ .|+... ...+|.|.+++.
T Consensus 2 G~~V~LpC~~~~~~~~~~~~~~~~~~~i~W~k~~~~~~~~v~~~~~~~~~~~~~f~gR~~~~~~~~~~~~asL~I~~l~~ 81 (110)
T cd05878 2 SSSVLLPCYFTLPPALPPPSNAPESPRIKWTKLSGQKEVTVLVAQDGVVKVGQEYQGRVSLPNYPENRGDASLEISRLRS 81 (110)
T ss_pred CCCEEEeeEeeCCccccccccCCCCCEEEEEEecCCCcEEEEEEECCEEEecccccCeEEeccCCCCCCcEEEEECCCCh
Confidence 78999999997654 257999985 2221100 0 1111 355542 334799999999
Q ss_pred CCCeEEEEEEEeCCceeEEEEEEEEEe
Q psy15127 308 EDAGFFVCSALSVAGSTTVRAFLQVRE 334 (633)
Q Consensus 308 ~d~G~Y~C~a~n~~g~~~~~~~l~v~~ 334 (633)
+|+|.|.|.+.......+..+.|.|..
T Consensus 82 sD~G~Y~C~v~~~~~~~~~~v~l~V~g 108 (110)
T cd05878 82 SDSGVYRCEVMHGIEDEQDTVPLEVTG 108 (110)
T ss_pred hhCEEEEEEEEeCCCcceEEEEEEEEE
Confidence 999999999998777778888888764
No 277
>cd05775 Ig_SLAM-CD84_like_N N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like. Ig_SLAM-CD84_like_N: The N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like. The SLAM family is a group of immune-cell specific receptors that can regulate both adaptive and innate immune responses. Members of this group include proteins such as CD84, SLAM (CD150), Ly-9 (CD229), NTB-A (ly-108, SLAM6), 19A (CRACC), and SLAMF9. The genes coding for the SLAM family are nested on chromosome 1, in humans at 1q23, and in mice at 1H2. The SLAM family is a subset of the CD2 family, which also includes CD2 and CD58 located on chromosome 1 at 1p13 in humans. In mice, CD2 is located on chromosome 3, and there is no CD58 homolog. The SLAM family proteins are organized as an extracellular domain with either two or four Ig-like domains, a single transmembrane segment, and a cytoplasmic region
Probab=98.04 E-value=2.7e-05 Score=61.62 Aligned_cols=79 Identities=23% Similarity=0.341 Sum_probs=53.5
Q ss_pred CCceEEEEEEEee-ecCCeeEEEECCEEEEeccC-----------Ccc-ceEEEccC-ceEEEcCCCCCCCeEEEEEEEe
Q psy15127 254 HPRVNRLSCFAEG-SPLPSVFWTQEGSQVLMFPG-----------NAY-GHLHVTQE-GTLRIQGVQKEDAGFFVCSALS 319 (633)
Q Consensus 254 ~g~~~~l~C~~~g-~p~~~v~W~~~g~~~~~~~~-----------~~~-~~~~~~~~-~~l~i~~~~~~d~G~Y~C~a~n 319 (633)
.|++|+|.|.... .....+.|++....+..... ..+ .|+.+..+ .+|.|.+++.+|+|.|.|.+.+
T Consensus 3 ~G~sVtL~c~~~~~~~~~~v~W~~~~~~~i~~~~~~~~~~~~~~~~~f~~R~~~~~~~~sL~I~~~~~~DsG~Y~c~v~~ 82 (97)
T cd05775 3 LGGSVTLPLNIPDGTEIESITWSFNTSLAIITPGEETAPEIIVTDPSYKERVNFSQNDYSLQISNLKMEDAGSYRAEINT 82 (97)
T ss_pred cCCeEEEeCCCCCCcEEEEEEEecCCEeEEEecCCCCCCccEEeCCCceeeEEecCCceeEEECCCchHHCEEEEEEEEc
Confidence 4799999998755 44468999987543322111 111 34555443 6899999999999999999988
Q ss_pred CCcee-EEEEEEEE
Q psy15127 320 VAGST-TVRAFLQV 332 (633)
Q Consensus 320 ~~g~~-~~~~~l~v 332 (633)
..|.. ...+.|.|
T Consensus 83 ~~~~~~~~~f~L~v 96 (97)
T cd05775 83 KNGVTITKEFTLHI 96 (97)
T ss_pred CCCCeEEEEEEEEe
Confidence 77544 44444443
No 278
>cd05718 Ig1_PVR_like First immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155) and similar proteins. Ig1_PVR_like: domain similar to the first immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155). Poliovirus (PV) binds to its cellular receptor (PVR/CD155) to initiate infection. CD155 is a membrane-anchored, single-span glycoprotein; its extracellular region has three Ig-like domains. There are four different isotypes of CD155 (referred to as alpha, beta, gamma, and delta), that result from alternate splicing of the CD155 mRNA, and have identical extracellular domains. CD155-beta and - gamma, are secreted, CD155-alpha and delta are membrane-bound and function as PV receptors. The virus recognition site is contained in the amino-terminal domain, D1. Having the virus attachment site on the receptor distal from the plasma membrane, may be important for successful initiation of infection of cells by the virus. CD155 binds in the poliovirus "c
Probab=98.02 E-value=3.6e-05 Score=61.34 Aligned_cols=77 Identities=21% Similarity=0.401 Sum_probs=52.5
Q ss_pred ceEEEEEEEeeec---CCeeEEEECCE----EEEec--------cCCccceEEEc----cCceEEEcCCCCCCCeEEEEE
Q psy15127 256 RVNRLSCFAEGSP---LPSVFWTQEGS----QVLMF--------PGNAYGHLHVT----QEGTLRIQGVQKEDAGFFVCS 316 (633)
Q Consensus 256 ~~~~l~C~~~g~p---~~~v~W~~~g~----~~~~~--------~~~~~~~~~~~----~~~~l~i~~~~~~d~G~Y~C~ 316 (633)
++++|.|.....+ ...+.|+|... .+... ...-..|.... .+.+|.|.+++.+|+|.|.|.
T Consensus 1 ~~v~L~C~~~~~~~~~~~~v~W~k~~~~~~~~i~~~~~~~~~~~~~~~~~R~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~ 80 (98)
T cd05718 1 ESVTLECSFPVPGPVQITQVTWMKITGGSKQNIAVFHPQYGISIPPSYEGRVSFLNSSLEDATISISNLRLEDEGNYICE 80 (98)
T ss_pred CCEEEEeEeeCCCCceEEEEEEeeECCCCCEEEEEEecCCCcccCcCcCceEEEeCCCCCceEEEEccCCcccCEEEEEE
Confidence 4689999987765 34799998643 11111 01112333333 345899999999999999999
Q ss_pred EEe-CCceeEEEEEEEE
Q psy15127 317 ALS-VAGSTTVRAFLQV 332 (633)
Q Consensus 317 a~n-~~g~~~~~~~l~v 332 (633)
+.+ ..|.......|.|
T Consensus 81 v~~~~~g~~~~~~~l~V 97 (98)
T cd05718 81 FATFPQGNRQKVTTLTV 97 (98)
T ss_pred EEeCCCCcEEEEEEEEe
Confidence 875 6678888877776
No 279
>PF13927 Ig_3: Immunoglobulin domain; PDB: 2D3V_A 1G0X_A 1VDG_A 1P7Q_D 3D2U_H 1UFU_A 1UGN_A 3VH8_H 3OQ3_B 4DKD_C ....
Probab=98.01 E-value=1.7e-05 Score=59.52 Aligned_cols=57 Identities=30% Similarity=0.557 Sum_probs=41.9
Q ss_pred EEEEEEEeeec-CCeeEEEECCEEEEeccCCccceEEEccCceEEEcCCCCCCCeEEEEEEEe
Q psy15127 258 NRLSCFAEGSP-LPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALS 319 (633)
Q Consensus 258 ~~l~C~~~g~p-~~~v~W~~~g~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n 319 (633)
++|.|.+.+.+ .+.+.|+ +...... ..........+.|.|.++..+|.|.|+|.|.|
T Consensus 18 ~~l~C~~~~~~~~~~~~W~-~~~~~~~----~~~~~~~~~~~~L~i~~v~~~~~g~y~C~a~N 75 (75)
T PF13927_consen 18 VTLTCSAEGGPPPPSISWY-DSNPSFN----SNSRGSSSSNSTLTISNVTRSDNGTYTCIASN 75 (75)
T ss_dssp EEEEEEESSEESSEEEEEE-TEEEEEE----EEEEEEEEEEEEEEESSCCGGGTEEEEEEEEE
T ss_pred EEEEEEEccccCCeEEEEE-ecCCcee----eeeeeccceeeEEEEccCCHHhCcEEEEEEEC
Confidence 99999999988 7799999 1111110 11222334556899999999999999999987
No 280
>cd07706 IgV_TCR_delta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) delta chain. IgV_TCR_delta: immunoglobulin (Ig) variable (V) domain of the delta chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is
Probab=97.97 E-value=2.9e-05 Score=64.05 Aligned_cols=71 Identities=25% Similarity=0.439 Sum_probs=51.5
Q ss_pred eeeCCCceEEEcCCeEEEEEEEecc-CCCeEEEEeCC--ccC-------------CCCCeEEc-----ccceEEEccCCC
Q psy15127 74 PISEPSDATVLSGSVVEFVCRVGGD-PLPTILWRRDD--GKM-------------PTGRAKIL-----DDRSLQIENVGP 132 (633)
Q Consensus 74 ~~~~~~~~~~~~G~~~~L~C~~~~~-p~p~i~W~~~~--~~i-------------~~~~~~~~-----~~~~L~i~~v~~ 132 (633)
+...|..+.+.+|++++|.|..... ....+.|+|.. ..+ ..+|+... .+..|+|.+++.
T Consensus 2 v~q~~~~v~~~~G~~v~L~C~~~~~~~~~~v~Wyrq~~~~~~~~l~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~~~~ 81 (116)
T cd07706 2 VTQAQPDVSVQVGEEVTLNCRYETSWTNYYIFWYKQLPSGEMTFLIRQKSIYGNATKGRYSVNFQKAQKSISLTISALQL 81 (116)
T ss_pred cEEeCCceEEcCCCCEEEEEEEeCCCCceEEEEEEECCCCceEEEEEecCccCCccCCeEEEEEeccCCEEEEEECCCCH
Confidence 3456778899999999999998653 44579999842 211 01333332 134799999999
Q ss_pred CCCeEEEEEEEe
Q psy15127 133 QDEGLYICDVEN 144 (633)
Q Consensus 133 ~d~G~Y~C~~~n 144 (633)
+|+|.|.|.+..
T Consensus 82 ~Dsg~Y~C~~~~ 93 (116)
T cd07706 82 EDSAKYFCALST 93 (116)
T ss_pred HHCEEEEEEEEC
Confidence 999999999874
No 281
>cd07705 Ig2_Necl-1 Second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). Ig2_Necl-1: second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue and is important to the formation of synapses, axon bundles, and myel
Probab=97.97 E-value=5.7e-05 Score=57.64 Aligned_cols=59 Identities=20% Similarity=0.421 Sum_probs=42.4
Q ss_pred EEEEEEEec-cCCCeEEEEeCCccCCCCCeEEc---------ccceEEEccCCCCCCeEEEEEEEeCCc
Q psy15127 89 VEFVCRVGG-DPLPTILWRRDDGKMPTGRAKIL---------DDRSLQIENVGPQDEGLYICDVENLVG 147 (633)
Q Consensus 89 ~~L~C~~~~-~p~p~i~W~~~~~~i~~~~~~~~---------~~~~L~i~~v~~~d~G~Y~C~~~n~~g 147 (633)
+.|.|.+.+ .|.+.|+|+++|..+........ ....|.|.....+|...|+|.|.+...
T Consensus 2 ~~LtC~a~g~~P~~~ItW~k~g~~l~~~~~~~~~~~~~~t~~~~s~l~~~~~~~d~g~~~tC~v~h~~l 70 (83)
T cd07705 2 AKLRCTSSGSKPAANIKWRKGDQELEGAPTSVLEDGNGKTFTVSSSVEFQVTREDDGAEITCSVGHESL 70 (83)
T ss_pred EEEEEEecCccCCCEeEEEECCEECCCcceeEEECCCCCEEEEEEEEEEEecchhCCCEEEEEEECccc
Confidence 689999976 58889999999998765322111 113455655667788999999987754
No 282
>cd04984 IgV_L_lambda Immunoglobulin (Ig) lambda light chain variable (V) domain. IgV_L_lambda: Immunoglobulin (Ig) light chain, lambda type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.
Probab=97.96 E-value=2.9e-05 Score=61.82 Aligned_cols=63 Identities=22% Similarity=0.318 Sum_probs=44.9
Q ss_pred EEEcCCeEEEEEEEecc--CCCeEEEEeCCc--cCC-------------CCCeEEcc---cceEEEccCCCCCCeEEEEE
Q psy15127 82 TVLSGSVVEFVCRVGGD--PLPTILWRRDDG--KMP-------------TGRAKILD---DRSLQIENVGPQDEGLYICD 141 (633)
Q Consensus 82 ~~~~G~~~~L~C~~~~~--p~p~i~W~~~~~--~i~-------------~~~~~~~~---~~~L~i~~v~~~d~G~Y~C~ 141 (633)
.+.+|++++|.|.+.+. ....+.|||... ... .+++.... ...|+|.+++.+|+|.|.|.
T Consensus 2 ~v~~G~~v~l~C~~~~~~~~~~~i~Wy~q~~g~~~~~l~~~~~~~~~~~~~rf~~~~~~~~~~L~I~~~~~~Dsg~Y~C~ 81 (98)
T cd04984 2 SVSPGETVTITCTGSSGNISGNYVNWYQQKPGSAPRYLIYEDSDRPSGIPDRFSGSKSGNTASLTISGAQTEDEADYYCQ 81 (98)
T ss_pred ccCCCCCEEEEEEEcCCCcCCCCEEEEEECCCCCccEEEEeccccCCCCCCCEEEEccCCEEEEEECCCChhhCEEEEEE
Confidence 47899999999998754 455799998542 110 11222211 24699999999999999999
Q ss_pred EEe
Q psy15127 142 VEN 144 (633)
Q Consensus 142 ~~n 144 (633)
+.+
T Consensus 82 ~~~ 84 (98)
T cd04984 82 VWD 84 (98)
T ss_pred Ecc
Confidence 864
No 283
>cd05755 Ig2_ICAM-1_like Second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54) and similar proteins. Ig2_ ICAM-1_like: domain similar to the second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54). During the inflammation process, these molecules recruit leukocytes onto the vascular endothelium before extravasation to the injured tissues. ICAM-1 may be involved in organ targeted tumor metastasis. The interaction of ICAM-1 with leukocyte function-associated antigen-1 (LFA-1) plays a part in leukocyte-endothelial cell recognition. This group also contains ICAM-2, which also interacts with LFA-1. Transmigration of immature dendritic cells across resting endothelium is dependent on the interaction of ICAM-2 with, yet unidentified, ligand(s) on the dendritic cells. ICAM-1 has five Ig-like domains and ICAM-2 has two. ICAM-1 may also act as host receptor for viruses and parasites.
Probab=97.95 E-value=4.3e-05 Score=59.82 Aligned_cols=71 Identities=14% Similarity=0.184 Sum_probs=50.3
Q ss_pred CCCceEEEcCCeEEEEEEEec-cCCCe--EEEEeCCccCCCCCeEE------cccceEEEccCCCCCCeEEEEEEEeCCc
Q psy15127 77 EPSDATVLSGSVVEFVCRVGG-DPLPT--ILWRRDDGKMPTGRAKI------LDDRSLQIENVGPQDEGLYICDVENLVG 147 (633)
Q Consensus 77 ~~~~~~~~~G~~~~L~C~~~~-~p~p~--i~W~~~~~~i~~~~~~~------~~~~~L~i~~v~~~d~G~Y~C~~~n~~g 147 (633)
.+....+.+|+.++|.|.+.+ .|.+. |.|||++..+....+.. ....+|++..-..+|...|+|+|.+..+
T Consensus 7 ~~~p~~~~eG~~~tL~C~v~g~~P~a~L~i~W~rG~~~l~~~~~~~~~~~~~~~~stlt~~~~r~D~g~~~sC~A~l~l~ 86 (100)
T cd05755 7 SPLPSWQPVGKNYTLQCDVPGVAPRQNLTVVLLRGNETLSRQPFGDNTKSPVNAPATITITVDREDHGANFSCETELDLR 86 (100)
T ss_pred ecCCCcccCCCcEEEEEEEcCcCCCCcEEEEEeeCCEEcccceeccccCCCceeEEEEEEecchhhCCcEEEEEEEeccC
Confidence 344445789999999999975 67775 79999999885432221 1124677765556666699999987653
No 284
>cd05761 Ig2_Necl-1-4_like Second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-4 (also known as cell adhesion molecules CADM3, CADM1, CADM2, and CADM4, respectively). Ig2_Necl-1-4_like: domain similar to the second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), Necl-3 (CADM2) and Necl-4 (CADM4). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cel
Probab=97.93 E-value=5.2e-05 Score=57.83 Aligned_cols=60 Identities=27% Similarity=0.403 Sum_probs=42.1
Q ss_pred EEEEEEEec-cCCCeEEEEeCCccCCCCCeEEc--------ccceEEEccCCCCCCeEEEEEEEeCCce
Q psy15127 89 VEFVCRVGG-DPLPTILWRRDDGKMPTGRAKIL--------DDRSLQIENVGPQDEGLYICDVENLVGS 148 (633)
Q Consensus 89 ~~L~C~~~~-~p~p~i~W~~~~~~i~~~~~~~~--------~~~~L~i~~v~~~d~G~Y~C~~~n~~g~ 148 (633)
+.|.|.+.+ .|.+.|+|++++..+........ ..+.|.+.....+|.+.|+|.|.+....
T Consensus 2 ~~L~C~~~~~~P~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~s~l~~~~~~~d~g~~~~C~v~h~~l~ 70 (82)
T cd05761 2 VELTCTSSGSKPAATIRWFKGDKELKGVKLKEEDENGKTFTVTSSLRFQVDREDDGAPIICRVDHPALK 70 (82)
T ss_pred EEEEEEecCcCcCCeEEEEECCEEccCceeeEecCCCCEEEEEEEEEEEcchhhCCCEEEEEEeChhcC
Confidence 689999975 58889999999998854321111 1234666555566778999999887543
No 285
>cd00098 IgC Immunoglobulin Constant domain. IgC: Immunoglobulin constant domain (IgC). Members of the IgC family are components of immunoglobulin, T-cell receptors, CD1 cell surface glycoproteins, secretory glycoproteins A/C, and Major Histocompatibility Complex (MHC) class I/II molecules. In immunoglobulins, each chain is composed of one variable domain (IgV) and one or more IgC domains. These names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. The IgV domain is responsible for antigen binding, and the IgC domain is involved in oligomerization and molecular interactions.
Probab=97.91 E-value=2.7e-05 Score=61.69 Aligned_cols=64 Identities=22% Similarity=0.347 Sum_probs=47.3
Q ss_pred EcCCeEEEEEEEecc-C-CCeEEEEeCCccCCCCCe--EE--ccc------ceEEEccCCCCCCeEEEEEEEeCCc
Q psy15127 84 LSGSVVEFVCRVGGD-P-LPTILWRRDDGKMPTGRA--KI--LDD------RSLQIENVGPQDEGLYICDVENLVG 147 (633)
Q Consensus 84 ~~G~~~~L~C~~~~~-p-~p~i~W~~~~~~i~~~~~--~~--~~~------~~L~i~~v~~~d~G~Y~C~~~n~~g 147 (633)
..|+.++|.|.+.|. | .+.|+|+++|..+..... .. ..+ +.|.|......|.|.|+|.|.+...
T Consensus 11 ~~~~~~~L~C~a~g~~P~~~~i~W~~~g~~~~~~~~~~~~~~~~~gt~~~~s~l~v~~~~~~~~~~y~C~v~h~~~ 86 (95)
T cd00098 11 LLGGSVTLTCLATGFYPPDITVTWLKNGKELTSGVTTTPPVPNSDGTYSVSSQLTVSPSDWNSGDTYTCVVTHESL 86 (95)
T ss_pred HcCCCeEEEEEEeeEECCCcEEEEEECCEECCCceeccccccCCCCCEEEEEEEEECHHHhCCCCCEEEEEEeCCC
Confidence 468899999999987 5 358999999998865432 11 112 3566766666799999999988654
No 286
>smart00060 FN3 Fibronectin type 3 domain. One of three types of internal repeat within the plasma protein, fibronectin. The tenth fibronectin type III repeat contains a RGD cell recognition sequence in a flexible loop between 2 strands. Type III modules are present in both extracellular and intracellular proteins.
Probab=97.89 E-value=6.4e-05 Score=57.07 Aligned_cols=76 Identities=30% Similarity=0.451 Sum_probs=50.3
Q ss_pred eeeecccceEEEEEEEecCCCcccccchhhhhcceeEEEEEEcCCCcccceeeeeeccceeEeecCCccceEEeeccccc
Q psy15127 534 ELIPTASTAVRITWEVSWGSVPQHLLDEARARLGTKVVNLRELIPTASTAVRITWEKYNMATVMNAATTTSYTVTHLRKF 613 (633)
Q Consensus 534 ~~~~~~~~si~v~W~~p~~~~p~~~~~~~~~i~~y~~i~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~i~~L~~~ 613 (633)
++......++.|+|++| ...+. .+| .+.|........ ..|. .+........+.|.+|+++
T Consensus 8 ~~~~~~~~~~~v~W~~~--------~~~~~--~~y-~~~~~~~~~~~~----~~~~-----~~~~~~~~~~~~i~~L~~~ 67 (83)
T smart00060 8 RVTDVTSTSVTLSWEPP--------PDDGI--TGY-IVGYRVEYREEG----SSWK-----EVNVTPSSTSYTLTGLKPG 67 (83)
T ss_pred EEEEEeCCEEEEEECCC--------CCCCC--Ccc-EEEEEEEEecCC----CccE-----EEEecCCccEEEEeCcCCC
Confidence 55566677999999954 11122 788 787776544320 1132 1112222678999999999
Q ss_pred eeEEEEEecccccccc
Q psy15127 614 TKYEFFLVPFFKTVEG 629 (633)
Q Consensus 614 t~Y~~~v~a~n~~g~g 629 (633)
+.|.|+|+|.+..|.+
T Consensus 68 ~~Y~v~v~a~~~~g~~ 83 (83)
T smart00060 68 TEYEFRVRAVNGAGEG 83 (83)
T ss_pred CEEEEEEEEEcccCCC
Confidence 9999999999986653
No 287
>cd04983 IgV_TCR_alpha_like Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) alpha chain and similar proteins. IgV_TCR_alpha: immunoglobulin (Ig) variable domain of the alpha chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group represents the variable domain of the alpha chain of TCRs and also includes the variable domain of delta chains of TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide.
Probab=97.88 E-value=7.5e-05 Score=60.84 Aligned_cols=74 Identities=18% Similarity=0.334 Sum_probs=52.0
Q ss_pred eeEEecCCceEEEEEEEeeecCCeeEEEECCE---E--EEec-cC---CccceEEEc-----cCceEEEcCCCCCCCeEE
Q psy15127 248 SLLIWNHPRVNRLSCFAEGSPLPSVFWTQEGS---Q--VLMF-PG---NAYGHLHVT-----QEGTLRIQGVQKEDAGFF 313 (633)
Q Consensus 248 ~~~~~~~g~~~~l~C~~~g~p~~~v~W~~~g~---~--~~~~-~~---~~~~~~~~~-----~~~~l~i~~~~~~d~G~Y 313 (633)
..+.+..|++++|.|.+.+.+...+.|++... . +... .. ....++.+. ....|.|.+++.+|+|.|
T Consensus 6 ~~v~~~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~~~~~DsG~Y 85 (109)
T cd04983 6 QSLSVQEGENVTLNCNYSTSTFYYLFWYRQYPGQGPQFLIYISSNGEEKEKGRFSATLDKSRKSSSLHISAAQLSDSAVY 85 (109)
T ss_pred CceEEcCCCCEEEEEEECCCCccEEEEEEECCCCCeEEEEEEecCCCcccCCcEEEEEcccCCEEEEEECCCCHHHCEEE
Confidence 45667889999999999888788999998532 1 1100 00 122344333 234799999999999999
Q ss_pred EEEEEeCC
Q psy15127 314 VCSALSVA 321 (633)
Q Consensus 314 ~C~a~n~~ 321 (633)
.|.+.+..
T Consensus 86 ~C~~~~~~ 93 (109)
T cd04983 86 FCALSESG 93 (109)
T ss_pred EEEEecCC
Confidence 99998754
No 288
>cd07700 IgV_CD8_beta Immunoglobulin (Ig) like domain of CD8 beta chain. IgV_CD8_beta: immunoglobulin (Ig)-like domain in CD8 beta. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alpha/alpha or alpha/beta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a V-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain.
Probab=97.87 E-value=5.2e-05 Score=61.36 Aligned_cols=62 Identities=26% Similarity=0.426 Sum_probs=43.5
Q ss_pred EEEcCCeEEEEEEEecc-CCCeEEEEeCCcc---C--------C------------CCCeEEc--c---cceEEEccCCC
Q psy15127 82 TVLSGSVVEFVCRVGGD-PLPTILWRRDDGK---M--------P------------TGRAKIL--D---DRSLQIENVGP 132 (633)
Q Consensus 82 ~~~~G~~~~L~C~~~~~-p~p~i~W~~~~~~---i--------~------------~~~~~~~--~---~~~L~i~~v~~ 132 (633)
.+++|++++|.|.+.+. ....+.|||.... . . .+++... . ...|+|.+++.
T Consensus 2 ~v~~G~~vtL~C~~~~~~~~~~~~Wyrq~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~I~~~~~ 81 (107)
T cd07700 2 LVQTNNTVKLSCEAKGISENTRIYWLRWRQAPKDSHFEFLALWSPLGGATYGEEVSQEKFSIRVTSDSSRYRLHINRVKP 81 (107)
T ss_pred EEcCCCCEEEEEEEecCCCCCeEEEEEECCCCCCCccEEEEEEcCCCCeEEccccccCcEEEEEECCCCEEEEEECCCCH
Confidence 57899999999998653 3447999985321 0 0 1122211 1 13599999999
Q ss_pred CCCeEEEEEEE
Q psy15127 133 QDEGLYICDVE 143 (633)
Q Consensus 133 ~d~G~Y~C~~~ 143 (633)
+|+|.|.|...
T Consensus 82 ~Dsg~YyCa~~ 92 (107)
T cd07700 82 EDSGTYFCMTV 92 (107)
T ss_pred HHCEEEEEeEc
Confidence 99999999975
No 289
>cd05889 Ig1_DNAM-1_like First immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226) and similar proteins. Ig1_DNAM-1_like: domain similar to the first immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226). DNAM-1 is a transmembrane protein having two Ig-like domains. It is an adhesion molecule which plays a part in tumor-directed cytotoxicity and adhesion in natural killer (NK) cells and T lymphocytes. It has been shown to regulate the NK cell killing of several tumor types, including myeloma cells and ovarian carcinoma cells. DNAM-1 interacts specifically with poliovirus receptor (PVR; CD155) and nectin -2 (CD211), other members of the Ig superfamily. DNAM-1 is expressed in most peripheral T cells, NK cells, monocytes and a subset of B lymphocytes.
Probab=97.86 E-value=0.00015 Score=56.60 Aligned_cols=69 Identities=26% Similarity=0.503 Sum_probs=46.5
Q ss_pred CeEEEEEEEec-cCCCeEEEEeCCc----cC-----------C---CCCeEEc----ccceEEEccCCCCCCeEEEEEEE
Q psy15127 87 SVVEFVCRVGG-DPLPTILWRRDDG----KM-----------P---TGRAKIL----DDRSLQIENVGPQDEGLYICDVE 143 (633)
Q Consensus 87 ~~~~L~C~~~~-~p~p~i~W~~~~~----~i-----------~---~~~~~~~----~~~~L~i~~v~~~d~G~Y~C~~~ 143 (633)
+.++|.|.... .....++|.|... .+ . .+|.... .+.+|.|.|++.+|+|.|+|.+.
T Consensus 1 ~~vtL~C~~~~~~~~~qV~W~k~~~~~~~~iavy~~~~g~~~~~~y~~Rv~f~~~~~~d~sI~i~nvt~~D~G~Y~C~~~ 80 (96)
T cd05889 1 EKMKLECVYPKTGVLIQVSWTKHNGSHKENIAVYHPIYGMHIEDKYRGRVYFLNSTREDMSLSFNNATEEDVGLYCCSLV 80 (96)
T ss_pred CCEEEEeEcCCCCcEEEEEEEEcCCCCCceEEEEECCCCCEECccccCeEEEecCCCCccEEEEcCCCcccCEEEEEEEE
Confidence 46899999853 2344689998532 11 0 1232222 25789999999999999999997
Q ss_pred eC-CceEEEEEEE
Q psy15127 144 NL-VGSISLRASL 155 (633)
Q Consensus 144 n~-~g~~s~~~~l 155 (633)
.. .|..++.+.|
T Consensus 81 t~P~g~~~~~i~~ 93 (96)
T cd05889 81 TYPQGSWEKVIEV 93 (96)
T ss_pred eCCCCCeEEEEEE
Confidence 65 5656665554
No 290
>cd05886 Ig1_Nectin-1_like First immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111) and similar proteins. Ig1_Nectin-1_like: domain similar to the first immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111). Nectin-1 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. In addition nectins heterophilically trans-interact with other CAMs such as nectin-like molecules (Necls), nectin-1 for example, has been shown to trans-interact with Necl-1. Nectins also interact with various other proteins, including the actin filament (F-actin)-binding protein, afadin. Mutation in the human nectin-1 gene is
Probab=97.85 E-value=0.0002 Score=56.42 Aligned_cols=76 Identities=20% Similarity=0.338 Sum_probs=51.4
Q ss_pred eEEEEEEEeeecC-C---eeEEEECC--E--EEEeccC--------CccceEEEc----cCceEEEcCCCCCCCeEEEEE
Q psy15127 257 VNRLSCFAEGSPL-P---SVFWTQEG--S--QVLMFPG--------NAYGHLHVT----QEGTLRIQGVQKEDAGFFVCS 316 (633)
Q Consensus 257 ~~~l~C~~~g~p~-~---~v~W~~~g--~--~~~~~~~--------~~~~~~~~~----~~~~l~i~~~~~~d~G~Y~C~ 316 (633)
+++|.|.....++ . +|.|.+.. . .+..... .-.+|+... .+.+|.|.+++.+|.|.|.|.
T Consensus 2 ~v~L~C~f~~~~~~~~~~~V~W~k~~~~~~~~va~y~~~~g~~~~~~f~~Rv~f~~~~~~daSi~i~nl~~~D~G~Y~C~ 81 (99)
T cd05886 2 DVVLHCSFINPLPPVKITQVTWQKLTNGSKQNVAIYNPSMGVSVLPPYRERVTFKNPSFEDGTISLSRLELEDEGVYICE 81 (99)
T ss_pred cEEEEeEeecCCCCCCeEEEEEEECCCCCceEEEEECCcCCcccCccccCcEEEcCCCCCcceEEEcCCccccCEEEEEE
Confidence 5789999875322 1 68998842 1 2221111 111344433 246899999999999999999
Q ss_pred EEe-CCceeEEEEEEEE
Q psy15127 317 ALS-VAGSTTVRAFLQV 332 (633)
Q Consensus 317 a~n-~~g~~~~~~~l~v 332 (633)
+.+ +.|+.+..+.|.|
T Consensus 82 v~t~P~g~~~~~~~L~V 98 (99)
T cd05886 82 FATFPTGNRESQLNLTV 98 (99)
T ss_pred EEeCCCCCeEEEEEEEE
Confidence 999 6788888887776
No 291
>smart00060 FN3 Fibronectin type 3 domain. One of three types of internal repeat within the plasma protein, fibronectin. The tenth fibronectin type III repeat contains a RGD cell recognition sequence in a flexible loop between 2 strands. Type III modules are present in both extracellular and intracellular proteins.
Probab=97.85 E-value=0.00021 Score=54.14 Aligned_cols=77 Identities=38% Similarity=0.539 Sum_probs=52.9
Q ss_pred CCCcEEEEeeCCeEEEEeCCCCCCCCCCcceeEEEEEEEEecCCC--CeEEEEEeeeeceEEEecCCCCCeEEEEEEEEe
Q psy15127 413 PAAPVILNTTRGSVTLGWGEPEPRGGGVAPVIGYTVEYFSSDLQT--GWVVAAHRITSTSITVSDLKPDTSYMFIVRAEN 490 (633)
Q Consensus 413 p~~~~~~~~~~~~i~l~W~~~~~~~~~~~~i~~Y~v~~~~~~~~~--~~~~~~~~~~~~~~~i~~L~p~~~Y~~~v~a~n 490 (633)
|..+........++.|+|.++.... . .+|.+.|....... .|...........+.|.+|.|++.|.|+|+|.+
T Consensus 4 p~~~~~~~~~~~~~~v~W~~~~~~~----~-~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~~~~~Y~v~v~a~~ 78 (83)
T smart00060 4 PSNLRVTDVTSTSVTLSWEPPPDDG----I-TGYIVGYRVEYREEGSSWKEVNVTPSSTSYTLTGLKPGTEYEFRVRAVN 78 (83)
T ss_pred CCcEEEEEEeCCEEEEEECCCCCCC----C-CccEEEEEEEEecCCCccEEEEecCCccEEEEeCcCCCCEEEEEEEEEc
Confidence 3345555566679999999776331 1 56777776553322 354433333357899999999999999999999
Q ss_pred cccc
Q psy15127 491 SHGL 494 (633)
Q Consensus 491 ~~G~ 494 (633)
..|.
T Consensus 79 ~~g~ 82 (83)
T smart00060 79 GAGE 82 (83)
T ss_pred ccCC
Confidence 8664
No 292
>cd05899 IgV_TCR_beta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) bet a chain. IgV_TCR_beta: immunoglobulin (Ig) variable domain of the beta chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group includes the variable domain of the alpha chain of alpha/beta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide.
Probab=97.84 E-value=0.00018 Score=58.59 Aligned_cols=32 Identities=16% Similarity=0.442 Sum_probs=25.0
Q ss_pred cCCCceEEecCCcEEEEEeCCCCCCCCeEEEEEC
Q psy15127 166 AEPKDTRVASGETALLECGPPKGQPEPTLHWKKN 199 (633)
Q Consensus 166 ~~~~~~~~~~g~~~~l~C~~~~~~p~~~i~W~~~ 199 (633)
..|....+.+|++++|.|.+ .+ +...+.|+|.
T Consensus 3 Q~p~~~~v~~G~~v~l~C~~-~~-~~~~v~Wykq 34 (110)
T cd05899 3 QSPRYLIKGRGQSVTLRCSQ-TS-GHDNMYWYRQ 34 (110)
T ss_pred ECCCceEEcCCCcEEEEEEE-CC-CCCEEEEEEE
Confidence 45667788899999999984 44 6678999885
No 293
>cd05712 Ig_Siglec_N Immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins). Ig_Siglec_N: immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins). Siglec refers to a structurally related protein family that specifically recognizes sialic acid in oligosaccharide chains of glycoproteins and glycolipids. Siglecs are type I transmembrane proteins, organized as an extracellular module composed of Ig-like domains (an N-terminal variable set of Ig-like carbohydrate recognition domains, and 1 to 16 constant Ig-like domains), followed by transmembrane and short cytoplasmic domains. Human siglecs are classified into two subgroups, one subgroup is comprised of sialoadhesin (Siglec-1), CD22 (Siglec-2), and MAG, the other subgroup is comprised of CD33-related Siglecs which include CD33 (Siglec-3) and human Siglecs 5-11.
Probab=97.84 E-value=0.0001 Score=60.90 Aligned_cols=70 Identities=26% Similarity=0.349 Sum_probs=49.2
Q ss_pred eCCCceEEEcCCeEEEEEEEeccC------CCeEEEEeCCcc-----C----C---------CCCeEEcc-----cceEE
Q psy15127 76 SEPSDATVLSGSVVEFVCRVGGDP------LPTILWRRDDGK-----M----P---------TGRAKILD-----DRSLQ 126 (633)
Q Consensus 76 ~~~~~~~~~~G~~~~L~C~~~~~p------~p~i~W~~~~~~-----i----~---------~~~~~~~~-----~~~L~ 126 (633)
..|+.+.+.+|++++|.|...... ...+.|||.... + . .+|+.... +..|.
T Consensus 4 q~P~~v~~~~G~~VtL~C~f~~~~~~~~~~~~~~~Wykq~~g~~~~~~~~~~~~~~~~~~~f~gR~~~~~~~~~~~~sL~ 83 (119)
T cd05712 4 WMPKSVSVQEGLCVLIPCSFSYPADWPVSNGVHGIWYKGHPYPKNRPPVATNNRSRLVHESTRGRFRLLGDLGKKNCSLL 83 (119)
T ss_pred cCCCEEEEeccccEEEEEEeeCcccccCCCceEEEEEeCCCCCCCCCcEEEcCCCccccccccccEEEecCCCCCEEEEE
Confidence 457788999999999999875221 245899985321 0 0 12333321 24799
Q ss_pred EccCCCCCCeEEEEEEEeC
Q psy15127 127 IENVGPQDEGLYICDVENL 145 (633)
Q Consensus 127 i~~v~~~d~G~Y~C~~~n~ 145 (633)
|.+++.+|+|.|.|.+...
T Consensus 84 I~~l~~~Dsg~Y~C~~~~~ 102 (119)
T cd05712 84 ISDAQPEDSGKYFFRVELG 102 (119)
T ss_pred EccCChhhCeEEEEEEEcC
Confidence 9999999999999998653
No 294
>cd05716 Ig_pIgR Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR). Ig_pIgR: Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR). pIgR delivers dimeric IgA and pentameric IgM to mucosal secretions. Polymeric immunoglobulin (pIgs) are the first defense against pathogens and toxins. IgA and IgM can form polymers via an 18-residue extension at their c-termini referred to as the tailpiece. pIgR transports pIgs across mucosal epithelia into mucosal secretions. Human pIgR is a glycosylated type I transmembrane protein, comprised of a 620 residue extracellular region, a 23 residue transmembrane region, and a 103 residue cytoplasmic tail. The extracellular region contains five domains that share sequence similarity with Ig variable (v) regions.
Probab=97.81 E-value=0.00011 Score=58.41 Aligned_cols=65 Identities=20% Similarity=0.290 Sum_probs=46.8
Q ss_pred eEEEcCCeEEEEEEEec-cCCCeEEEEeCCccC--------------CCCCeEEcc-----cceEEEccCCCCCCeEEEE
Q psy15127 81 ATVLSGSVVEFVCRVGG-DPLPTILWRRDDGKM--------------PTGRAKILD-----DRSLQIENVGPQDEGLYIC 140 (633)
Q Consensus 81 ~~~~~G~~~~L~C~~~~-~p~p~i~W~~~~~~i--------------~~~~~~~~~-----~~~L~i~~v~~~d~G~Y~C 140 (633)
+.+.+|++++|.|.... .....+.|+|..... ..++..... ...|+|.+++.+|+|.|.|
T Consensus 2 v~~~~G~~vtl~C~~~~~~~~~~~~W~r~~~~~~~~~l~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C 81 (98)
T cd05716 2 VTGELGGSVTIPCPYPPKNRSYEKYWCKWGSAGCCLIIVSEGSVQSQYEGRVSLTDDPDNGVFTVTLNQLRKEDAGWYWC 81 (98)
T ss_pred EEEEeCCeEEEEeeCCCCCCCcEeEeECCCCCCCCeEEECCCccccccCCCEEEEecCCCCEEEEEEcCCCHHHCEEEEE
Confidence 46789999999999864 345579999965311 112333321 2479999999999999999
Q ss_pred EEEeC
Q psy15127 141 DVENL 145 (633)
Q Consensus 141 ~~~n~ 145 (633)
.+...
T Consensus 82 ~~~~~ 86 (98)
T cd05716 82 GVGDD 86 (98)
T ss_pred EcccC
Confidence 98754
No 295
>cd05715 Ig_P0-like Immunoglobulin (Ig)-like domain of Protein zero (P0) and similar proteins. Ig_P0ex-like: domain similar to the immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an extracellular Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin. This group also contains the Ig domain of Sodium channel subunit beta-2
Probab=97.75 E-value=0.00029 Score=58.01 Aligned_cols=26 Identities=19% Similarity=0.457 Sum_probs=22.8
Q ss_pred CceEEEcCCCCCCCeEEEEEEEeCCc
Q psy15127 297 EGTLRIQGVQKEDAGFFVCSALSVAG 322 (633)
Q Consensus 297 ~~~l~i~~~~~~d~G~Y~C~a~n~~g 322 (633)
+.+|.|.+++.+|+|.|.|.+.|.-+
T Consensus 79 ~~sL~I~~v~~~D~G~Y~C~v~~~~~ 104 (116)
T cd05715 79 DASIVIHNLQFTDNGTYTCDVKNPPD 104 (116)
T ss_pred eeEEEEeeCCcccCEEEEEEEEeCCC
Confidence 34799999999999999999998654
No 296
>cd05902 Ig_Neurocan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan. Ig_Neurocan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Unlike aggrecan which is widely distributed in connective tissue and extracellular matrices, neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many differen
Probab=97.74 E-value=0.00024 Score=57.17 Aligned_cols=80 Identities=18% Similarity=0.263 Sum_probs=54.7
Q ss_pred CceEEEEEEEeeec-------CCeeEEEEC-----CEEEE--ec-------cCCccceEEEcc------CceEEEcCCCC
Q psy15127 255 PRVNRLSCFAEGSP-------LPSVFWTQE-----GSQVL--MF-------PGNAYGHLHVTQ------EGTLRIQGVQK 307 (633)
Q Consensus 255 g~~~~l~C~~~g~p-------~~~v~W~~~-----g~~~~--~~-------~~~~~~~~~~~~------~~~l~i~~~~~ 307 (633)
|+.++|.|...-.| .+.+.|.+. ...+. .. ...-.+|..+.. +.+|.|.+++.
T Consensus 2 ~~~v~LpC~~~~~p~~~~~~~~~~I~W~k~~~~~~~~~~~v~v~~~~~~~~~~~y~gRvsl~~~~~~~~~asL~i~nv~~ 81 (110)
T cd05902 2 SSSVLLPCVFTLPPSASSPPEGPRIKWTKLRPASGQKQRPVLVARDNVVRVAKAFQGRVSLPGYPKNRYNASLVLSRLRY 81 (110)
T ss_pred CCcEEEeeEEEcCccccCCCCCCEEEEEEeCCCCCceEEEEEECCCCcEEEchhcccEEEeecCCCCCceEEEEECCCCH
Confidence 57899999976432 368999874 12211 10 111123555532 44899999999
Q ss_pred CCCeEEEEEEEeCCceeEEEEEEEEEe
Q psy15127 308 EDAGFFVCSALSVAGSTTVRAFLQVRE 334 (633)
Q Consensus 308 ~d~G~Y~C~a~n~~g~~~~~~~l~v~~ 334 (633)
+|+|.|.|.+.......+..+.|.|..
T Consensus 82 ~D~G~Y~C~v~~g~~~~~~~v~L~V~g 108 (110)
T cd05902 82 SDSGTYRCEVVLGINDEQDTVPLEVTG 108 (110)
T ss_pred HHCEEEEEEEEECCcccEEEEEEEEEE
Confidence 999999999999777778888888764
No 297
>PF07686 V-set: Immunoglobulin V-set domain; InterPro: IPR013106 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the V-set domains, which are Ig-like domains resembling the antibody variable domain. V-set domains are found in diverse protein families, including immunoglobulin light and heavy chains; in several T-cell receptors such as CD2 (Cluster of Differentiation 2), CD4, CD80, and CD86; in myelin membrane adhesion molecules; in junction adhesion molecules (JAM); in tyrosine-protein kinase receptors; and in the programmed cell death protein 1 (PD1).; PDB: 1PY9_A 2NXY_D 1U9K_B 3RNK_A 3BP6_A 3BIK_B 3SBW_A 1NPU_A 3BP5_A 3RNQ_A ....
Probab=97.74 E-value=0.00018 Score=59.10 Aligned_cols=86 Identities=20% Similarity=0.291 Sum_probs=55.0
Q ss_pred ceeEEecCCceEEEEEEEe-eecCCeeEEEECCE-----EEE---------eccCCccceEEEccC-----ceEEEcCCC
Q psy15127 247 ASLLIWNHPRVNRLSCFAE-GSPLPSVFWTQEGS-----QVL---------MFPGNAYGHLHVTQE-----GTLRIQGVQ 306 (633)
Q Consensus 247 ~~~~~~~~g~~~~l~C~~~-g~p~~~v~W~~~g~-----~~~---------~~~~~~~~~~~~~~~-----~~l~i~~~~ 306 (633)
+..+....|+++.|.|... ......+.|++... .+. ........+.....+ .+|.|.+++
T Consensus 8 ~~~v~~~~G~~v~L~C~~~~~~~~~~v~W~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~i~~l~ 87 (114)
T PF07686_consen 8 PSPVTVQEGESVTLPCSYSSSSNQSSVYWYRQSPGQGPQLIIRYSLSSTNETPTPSYSGRFTFSGNGSQNNFSLTIKNLQ 87 (114)
T ss_dssp ESEEEEETTSEEEEEEEEESSSSGSEEEEEEEETTSEEEEEEEEETTEEEEEEETTETTTEEEEEETTTTEEEEEESSES
T ss_pred CCeEEEecCCCEEEEEEEeCCCCcceEEEEEECccccceeeeeeccceeeeccccceeeeeeeeecccCCeEEEEECCCC
Confidence 4556778899999999998 44556899998322 111 001111123322222 369999999
Q ss_pred CCCCeEEEEEEEeC-CceeEEEEEEEE
Q psy15127 307 KEDAGFFVCSALSV-AGSTTVRAFLQV 332 (633)
Q Consensus 307 ~~d~G~Y~C~a~n~-~g~~~~~~~l~v 332 (633)
.+|+|.|.|.+... .......+.|.|
T Consensus 88 ~~DsG~Y~C~v~~~~~~~~~~~~~L~V 114 (114)
T PF07686_consen 88 PSDSGTYFCQVSTSNEQSFGNGTKLTV 114 (114)
T ss_dssp GGGEEEEEEEEEESSEEEEEEEEEEEE
T ss_pred cCcCEEEEEEEEECCCCEECCcEEEEC
Confidence 99999999999876 233344445443
No 298
>cd00099 IgV Immunoglobulin variable domain (IgV). IgV: Immunoglobulin variable domain (IgV). Members of the IgV family are components of immunoglobulin (Ig) and T cell receptors. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. Within the variable domain, there are regions of even more variability called the hypervariable or complementarity-determining regions (CDRs) which are responsible for antigen binding. A predominant feature of most Ig domains is the disulfide bridge connecting 2 beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=97.72 E-value=0.00011 Score=59.31 Aligned_cols=72 Identities=25% Similarity=0.412 Sum_probs=49.4
Q ss_pred EecCCceEEEEEEEeee-cCCeeEEEECCE-----EEEec-c------CCccceEEEc-----cCceEEEcCCCCCCCeE
Q psy15127 251 IWNHPRVNRLSCFAEGS-PLPSVFWTQEGS-----QVLMF-P------GNAYGHLHVT-----QEGTLRIQGVQKEDAGF 312 (633)
Q Consensus 251 ~~~~g~~~~l~C~~~g~-p~~~v~W~~~g~-----~~~~~-~------~~~~~~~~~~-----~~~~l~i~~~~~~d~G~ 312 (633)
.+..|++++|.|.+.+. +...+.|++... .+... . .....++... ...+|.|.+++.+|+|.
T Consensus 2 ~v~~G~~v~L~C~~~~~~~~~~v~W~k~~~~~~~~~i~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~I~~v~~~D~G~ 81 (105)
T cd00099 2 SVSEGESVTLSCTYSGSFSSYYIFWYRQKPGKGPELLIYISSNGSQYAGGVKGRFSGTRDSSKSSFTLTISSLQPEDSAV 81 (105)
T ss_pred eecCCCCEEEEEEEeCCcCcceEEEEEECCCCCCEEEEEEeCCCCccCccCCCcEEEEEeccCCEEEEEECCCCHHHCEE
Confidence 35678999999999876 667899998532 11110 0 1112333332 23379999999999999
Q ss_pred EEEEEEeCCc
Q psy15127 313 FVCSALSVAG 322 (633)
Q Consensus 313 Y~C~a~n~~g 322 (633)
|.|.+.+..+
T Consensus 82 Y~C~v~~~~~ 91 (105)
T cd00099 82 YYCAVSLSGG 91 (105)
T ss_pred EEEEEecCCC
Confidence 9999987665
No 299
>cd05888 Ig1_Nectin-4_like Frst immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor) and similar proteins. Ig1_Nectin-4_like: domain similar to the first immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor). Nectin-4 belongs to the nectin family, which is comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example nectin-4 trans-interacts with nectin-1. Nectin-4 has also been shown to interact with the actin filament-binding protein, afadin. Unlike the other nectins, which are widely expressed in adult tissues, nectin-4 is mainly expressed during embryogenesis, and is not detected in normal adult
Probab=97.72 E-value=0.00023 Score=56.66 Aligned_cols=76 Identities=25% Similarity=0.525 Sum_probs=50.1
Q ss_pred eEEEEEEEeeec---CCeeEEEECCE-----EEEec----cCC---cc-ceEEEc-----cCceEEEcCCCCCCCeEEEE
Q psy15127 257 VNRLSCFAEGSP---LPSVFWTQEGS-----QVLMF----PGN---AY-GHLHVT-----QEGTLRIQGVQKEDAGFFVC 315 (633)
Q Consensus 257 ~~~l~C~~~g~p---~~~v~W~~~g~-----~~~~~----~~~---~~-~~~~~~-----~~~~l~i~~~~~~d~G~Y~C 315 (633)
+++|.|...... ...+.|+|... .+... ... .+ .|.... .+.+|.|.+++.+|+|.|.|
T Consensus 2 ~v~L~C~~~~~~~~~~~~v~W~k~~~~~~~~~i~~~~~~~~~~~~~~~~~Rv~f~~~~~~~~~sL~I~nv~~sD~GtY~C 81 (100)
T cd05888 2 DTRLPCRYNVSDGETVVQVLWIRENAGGVEEEIALLHFKYGQTEFHAYEGRVRFETPNPIADGALILRNAVQADEGKYKC 81 (100)
T ss_pred CEEEEeEEecCCCCcEEEEEEEEccCCCCcEEEEEEeccCCcccCCCccCcEEEeCCCCCCceEEEEecCccccceEEEE
Confidence 578999986544 34889998421 11111 000 11 233333 24589999999999999999
Q ss_pred EEEe-CCceeEEEEEEEE
Q psy15127 316 SALS-VAGSTTVRAFLQV 332 (633)
Q Consensus 316 ~a~n-~~g~~~~~~~l~v 332 (633)
.+.+ ..|..+..+.|.|
T Consensus 82 ~v~~~p~g~~~~~~~L~V 99 (100)
T cd05888 82 RVITFPAGNFEAELVLTV 99 (100)
T ss_pred EEEeCCCCCeeeEEEEEe
Confidence 9987 6677777777765
No 300
>cd05880 Ig_EVA1 Immunoglobulin (Ig)-like domain of epithelial V-like antigen 1 (EVA). Ig_EVA: immunoglobulin (Ig) domain of epithelial V-like antigen 1 (EVA). EVA is also known as myelin protein zero-like 2. EVA is an adhesion molecule, which may play a role in structural organization of the thymus and early lymphocyte development.
Probab=97.71 E-value=0.00027 Score=57.85 Aligned_cols=77 Identities=17% Similarity=0.310 Sum_probs=50.2
Q ss_pred ceeEEecCCceEEEEEEEeeecC----CeeEEEEC----CEE--EEeccC-------Ccc-ceEEEc-----cCceEEEc
Q psy15127 247 ASLLIWNHPRVNRLSCFAEGSPL----PSVFWTQE----GSQ--VLMFPG-------NAY-GHLHVT-----QEGTLRIQ 303 (633)
Q Consensus 247 ~~~~~~~~g~~~~l~C~~~g~p~----~~v~W~~~----g~~--~~~~~~-------~~~-~~~~~~-----~~~~l~i~ 303 (633)
+..+...+|++++|.|.....++ ..+.|++. +.. +..... ..+ .|+... .+.+|.|.
T Consensus 5 ~~~v~~~~G~~v~L~C~~s~~~~~~~~~~i~W~~~~~~~~~~~~v~~~~~~~~~~~~~~f~~R~~~~~~~~~~~~sL~I~ 84 (115)
T cd05880 5 SKEVEAVNGTDVRLKCTFSSSAPIGDTLVITWNFRPLDGGREESVFYYHKRPYPPPDGRFKGRVVWDGNIMRRDASILIW 84 (115)
T ss_pred CceEEEEcCCCEEEEEEEEeCCCCCCcEEEEEEEECCCCCceeEEEEECCCccccCcccccCeEEEecCCcCCceEEEEe
Confidence 45567788999999999865432 36999752 221 211111 111 233222 24479999
Q ss_pred CCCCCCCeEEEEEEEeCCce
Q psy15127 304 GVQKEDAGFFVCSALSVAGS 323 (633)
Q Consensus 304 ~~~~~d~G~Y~C~a~n~~g~ 323 (633)
+++.+|+|.|.|.+.|..+.
T Consensus 85 ~v~~~D~G~Y~C~v~~~~~~ 104 (115)
T cd05880 85 QLQPTDNGTYTCQVKNPPDV 104 (115)
T ss_pred eCChhhCEEEEEEEEeCCCC
Confidence 99999999999999987653
No 301
>cd05883 Ig2_Necl-2 Second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Ig2_Necl-2: second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Nectin-like molecules (Necls) have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is expressed in a wide variety of tissues, and is a putative tumour suppressor gene, which is downregulated in aggressive neuroblastoma. Ig domains are likely to participate in ligand binding and recognition.
Probab=97.70 E-value=0.00022 Score=53.49 Aligned_cols=76 Identities=16% Similarity=0.207 Sum_probs=47.8
Q ss_pred EEEEEEEee-ecCCeeEEEECCEEEEeccCCc-cceEEEccCceEEEcCCCCCCCeEEEEEEEeCCc-eeEEEEEEEEE
Q psy15127 258 NRLSCFAEG-SPLPSVFWTQEGSQVLMFPGNA-YGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAG-STTVRAFLQVR 333 (633)
Q Consensus 258 ~~l~C~~~g-~p~~~v~W~~~g~~~~~~~~~~-~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g-~~~~~~~l~v~ 333 (633)
+.|.|.+.| .|.+.|.|++++.++....... ...-.....+.|.|..-..+|...|+|+|.|..- .......|.|.
T Consensus 2 ~~L~C~s~gSkP~A~I~W~k~~~~l~~~~~~~~~~~~~~t~~S~L~~~p~~eDdG~~~~C~a~~~~l~~~~~~~~L~V~ 80 (82)
T cd05883 2 IELNCTAMASKPAATIRWFKGNKELTGKSTVEETWSRMFTVTSQLMLKVTKEDDGVPVICLVDHPAVKDLQTQRYLEVQ 80 (82)
T ss_pred EEEEEEecCCCCCCEEEEEECCEECcCcccceeccCCCcEEEEEEEEECchhhCCCEEEEEEcCcccCCceeeEEEEEE
Confidence 579999976 5668999999999875211000 0000111233688877777788899999988652 23444455543
No 302
>cd05887 Ig1_Nectin-3_like First immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3) and similar proteins. Ig1_Nectin-3_like: domain similar to the first immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3). Nectin-3 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example, during spermatid development, the nectin-3,-2 trans-interaction is required for the formation of Sertoli cell-spermatid junctions in testis, and during morphogenesis of the ciliary body, the nectin-3,-1 trans-interaction is important for apex-apex adhesion between the pigment and non-pigment layers of the ciliary epithelia. Nectins also
Probab=97.69 E-value=0.0007 Score=52.88 Aligned_cols=76 Identities=17% Similarity=0.290 Sum_probs=52.3
Q ss_pred eEEEEEEEeeecC-CeeEEEECC----EEEEeccC--------CccceEEEc----cCceEEEcCCCCCCCeEEEEEE-E
Q psy15127 257 VNRLSCFAEGSPL-PSVFWTQEG----SQVLMFPG--------NAYGHLHVT----QEGTLRIQGVQKEDAGFFVCSA-L 318 (633)
Q Consensus 257 ~~~l~C~~~g~p~-~~v~W~~~g----~~~~~~~~--------~~~~~~~~~----~~~~l~i~~~~~~d~G~Y~C~a-~ 318 (633)
+++|.|.....+. .+|.|.|.. ..+..... .-..|.... .+.+|.|.+++.+|+|.|.|.+ .
T Consensus 2 ~vtL~C~~~~~~~~~qV~W~k~~~~~~~~ia~y~~~~g~~~~~~y~~Rv~~~~~~~~d~sl~i~nv~~~D~G~Y~C~v~t 81 (96)
T cd05887 2 NVTLKCRIQVNETITQSSWEKIHGKGSVTLAVHHPMYGISIQPDYQGRVSFKNYSLLDATIMLENVGFSDIGVYICKAVT 81 (96)
T ss_pred CEEEEEEecCCCcEEEEEEEEcCCCCcEEEEEEcccCCcccChhhCCcEEEcCCCCCccEEEEeCCCccccEEEEEEEEe
Confidence 6789999865443 489998842 22221110 111344442 3568999999999999999997 5
Q ss_pred eCCceeEEEEEEEE
Q psy15127 319 SVAGSTTVRAFLQV 332 (633)
Q Consensus 319 n~~g~~~~~~~l~v 332 (633)
.+.|+.+++..|.|
T Consensus 82 fP~G~~~~~~~l~~ 95 (96)
T cd05887 82 FPLGNTQSSTTVTV 95 (96)
T ss_pred CCCCCeeEEEEEEE
Confidence 67888899888876
No 303
>cd07694 Ig2_CD4 Second immunoglobulin (Ig) domain of CD4. Ig2_CD4; second immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy.
Probab=97.69 E-value=0.00041 Score=51.85 Aligned_cols=75 Identities=17% Similarity=0.245 Sum_probs=53.5
Q ss_pred EecCCceEEEEEEEeeecCC--eeEEEECCEEEEeccCCccceEEEccCceEEEcCCCCCCCeEEEEEEEeCCceeEEEE
Q psy15127 251 IWNHPRVNRLSCFAEGSPLP--SVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRA 328 (633)
Q Consensus 251 ~~~~g~~~~l~C~~~g~p~~--~v~W~~~g~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~ 328 (633)
.+-.|++++|+|.....+.| .+.|...+... .........+|.+.++...|+|..+|.+....-.....+
T Consensus 10 ~lL~G~sLtLtl~~~s~s~p~~~i~w~~P~n~~--------~~~~~~~~ktL~~~qv~~qdSG~WtC~V~~~~k~~~~~~ 81 (88)
T cd07694 10 HVLSGTNLTLTLHGSSNSLPAFKVEWRGPGNKS--------KQILNQDKKTLNLVQLGPNDSGTWDCIVSVNSSEKTLKL 81 (88)
T ss_pred eeecCCcEEEEEecCCCCCCCccEEEeCCCCcc--------ceeccCCccEEEeceeCcccCCEEEEEEEECceEEEEEe
Confidence 35578999999999665444 99999766432 122223455899999999999999999976544445555
Q ss_pred EEEEE
Q psy15127 329 FLQVR 333 (633)
Q Consensus 329 ~l~v~ 333 (633)
.+.|.
T Consensus 82 ~V~Vl 86 (88)
T cd07694 82 DIKVL 86 (88)
T ss_pred eEEEE
Confidence 55554
No 304
>cd05884 Ig2_Necl-3 Second immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Ig2_Necl-3: second immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-3 has been shown to accumulate in tissues of the central and peripheral nervous system, where it is expressed in ependymal cells and myelinated axons. It is observed at the interface between the axon shaft and the myelin sheath. Ig domains are likely to participate in ligand binding and recognition.
Probab=97.68 E-value=0.0002 Score=54.50 Aligned_cols=58 Identities=19% Similarity=0.408 Sum_probs=42.5
Q ss_pred EEEEEEEec-cCCCeEEEEeCCccCCCCCeE---------EcccceEEEccCCCCCCeEEEEEEEeCC
Q psy15127 89 VEFVCRVGG-DPLPTILWRRDDGKMPTGRAK---------ILDDRSLQIENVGPQDEGLYICDVENLV 146 (633)
Q Consensus 89 ~~L~C~~~~-~p~p~i~W~~~~~~i~~~~~~---------~~~~~~L~i~~v~~~d~G~Y~C~~~n~~ 146 (633)
++|.|.+.| .|...|+|+|+|..+...... +.....|.|..-..+|...|+|+|.+..
T Consensus 2 ~~LtC~a~gf~P~~~itW~kng~~l~~~~~~~~~~~~~~t~~~~s~L~~~~~~~d~g~~ytC~v~h~~ 69 (83)
T cd05884 2 MQLTCKTSGSKPAADIRWFKNDKEIKDVKYLKEEDANRKTFTVSSTLDFRVDRSDDGVAIICRVDHES 69 (83)
T ss_pred EEEEEEeCCccCCCEEEEEECCEECcCceeeEeeCCCCCEEEEEEEEEEEcccccCCCEEEEEEechh
Confidence 689999976 677899999999987543211 1112467776666778899999998764
No 305
>cd04981 IgV_H Immunoglobulin (Ig) heavy chain (H), variable (V) domain. IgV_H: Immunoglobulin (Ig) heavy chain (H), variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which can associate with any of the heavy chains. This family includes alpha, gamma, delta, epsilon, and mu heavy chains.
Probab=97.65 E-value=0.00018 Score=59.11 Aligned_cols=69 Identities=25% Similarity=0.478 Sum_probs=48.3
Q ss_pred eCCCceEEEcCCeEEEEEEEeccC--CCeEEEEeCC--ccC-------C-----------CCCeEEcc---c--ceEEEc
Q psy15127 76 SEPSDATVLSGSVVEFVCRVGGDP--LPTILWRRDD--GKM-------P-----------TGRAKILD---D--RSLQIE 128 (633)
Q Consensus 76 ~~~~~~~~~~G~~~~L~C~~~~~p--~p~i~W~~~~--~~i-------~-----------~~~~~~~~---~--~~L~i~ 128 (633)
.+|....+.+|++++|.|...+.. ...+.|||.. +.. . .+++.... . ..|+|.
T Consensus 2 ~~~~~~~v~~G~~vtL~C~~~~~~~~~~~~~WYkQ~~g~~p~~l~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~I~ 81 (117)
T cd04981 2 VESGPGLVKPGQSLKLSCKASGFTFTSYGVNWVRQAPGKGLEWIGFINPGGGETYYADSVKGRFTITRDTSKSTVYLQLN 81 (117)
T ss_pred ccCCCeEEcCCCCEEEEEEEeCCCcccceEEEEEECCCCCcEEEEEEecCCCceEeCcccCCcEEEEEEccCCEEEEEEC
Confidence 467788899999999999875432 4569999843 211 0 12222221 1 269999
Q ss_pred cCCCCCCeEEEEEEEe
Q psy15127 129 NVGPQDEGLYICDVEN 144 (633)
Q Consensus 129 ~v~~~d~G~Y~C~~~n 144 (633)
+++.+|+|.|.|.+..
T Consensus 82 ~~~~~Dsa~YyCa~~~ 97 (117)
T cd04981 82 SLTPEDTAVYYCARGL 97 (117)
T ss_pred CCCHHHCEEEEEEEEc
Confidence 9999999999998754
No 306
>cd00098 IgC Immunoglobulin Constant domain. IgC: Immunoglobulin constant domain (IgC). Members of the IgC family are components of immunoglobulin, T-cell receptors, CD1 cell surface glycoproteins, secretory glycoproteins A/C, and Major Histocompatibility Complex (MHC) class I/II molecules. In immunoglobulins, each chain is composed of one variable domain (IgV) and one or more IgC domains. These names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. The IgV domain is responsible for antigen binding, and the IgC domain is involved in oligomerization and molecular interactions.
Probab=97.65 E-value=0.00012 Score=57.84 Aligned_cols=67 Identities=15% Similarity=0.209 Sum_probs=46.1
Q ss_pred CCceEEEEEEEeee-cC-CeeEEEECCEEEEeccCCccceEEEccC------ceEEEcCCCCCCCeEEEEEEEeCCc
Q psy15127 254 HPRVNRLSCFAEGS-PL-PSVFWTQEGSQVLMFPGNAYGHLHVTQE------GTLRIQGVQKEDAGFFVCSALSVAG 322 (633)
Q Consensus 254 ~g~~~~l~C~~~g~-p~-~~v~W~~~g~~~~~~~~~~~~~~~~~~~------~~l~i~~~~~~d~G~Y~C~a~n~~g 322 (633)
.|+.++|.|.+.|. |. +.++|+++|..+..... ........+ +.|.+.....+|.|.|+|+|.+...
T Consensus 12 ~~~~~~L~C~a~g~~P~~~~i~W~~~g~~~~~~~~--~~~~~~~~~gt~~~~s~l~v~~~~~~~~~~y~C~v~h~~~ 86 (95)
T cd00098 12 LGGSVTLTCLATGFYPPDITVTWLKNGKELTSGVT--TTPPVPNSDGTYSVSSQLTVSPSDWNSGDTYTCVVTHESL 86 (95)
T ss_pred cCCCeEEEEEEeeEECCCcEEEEEECCEECCCcee--ccccccCCCCCEEEEEEEEECHHHhCCCCCEEEEEEeCCC
Confidence 56899999999998 53 58999999987742211 011111222 2466776666799999999988654
No 307
>cd00096 Ig Immunoglobulin domain. Ig: immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of this group are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as, T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as, butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=97.65 E-value=0.00024 Score=52.19 Aligned_cols=58 Identities=31% Similarity=0.595 Sum_probs=44.7
Q ss_pred EEEEEEEeccCCCeEEEEeCCccCCCCCe--------EEcccceEEEccCCCCCCeEEEEEEEeCC
Q psy15127 89 VEFVCRVGGDPLPTILWRRDDGKMPTGRA--------KILDDRSLQIENVGPQDEGLYICDVENLV 146 (633)
Q Consensus 89 ~~L~C~~~~~p~p~i~W~~~~~~i~~~~~--------~~~~~~~L~i~~v~~~d~G~Y~C~~~n~~ 146 (633)
+.|.|.+.+.+...+.|++++........ .......|.|.++..+|.|.|.|.+.+..
T Consensus 1 ~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~ 66 (74)
T cd00096 1 VTLTCLASGPPPPTITWLKNGKPLPSSVLTRVRSSRGTSSGSSTLTISNVTLEDSGTYTCVASNSA 66 (74)
T ss_pred CEEEEEecCCCCCcEEEEECCEECCCcccEEeccccCcceeEEEEEECccCcccCcEEEEEEecCc
Confidence 46899998877778999998876543221 12234679999999999999999998765
No 308
>cd05761 Ig2_Necl-1-4_like Second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-4 (also known as cell adhesion molecules CADM3, CADM1, CADM2, and CADM4, respectively). Ig2_Necl-1-4_like: domain similar to the second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), Necl-3 (CADM2) and Necl-4 (CADM4). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cel
Probab=97.63 E-value=0.00024 Score=54.18 Aligned_cols=62 Identities=19% Similarity=0.302 Sum_probs=41.6
Q ss_pred EEEEEEEeee-cCCeeEEEECCEEEEeccCCccceEEEcc------CceEEEcCCCCCCCeEEEEEEEeCCce
Q psy15127 258 NRLSCFAEGS-PLPSVFWTQEGSQVLMFPGNAYGHLHVTQ------EGTLRIQGVQKEDAGFFVCSALSVAGS 323 (633)
Q Consensus 258 ~~l~C~~~g~-p~~~v~W~~~g~~~~~~~~~~~~~~~~~~------~~~l~i~~~~~~d~G~Y~C~a~n~~g~ 323 (633)
+.|.|.+.+. |.+.++|+++|+.+.... ....... .+.|.+.....++.+.|+|+|.+....
T Consensus 2 ~~L~C~~~~~~P~~~v~W~~~~~~l~~~~----~~~~~~~~~~~~~~s~l~~~~~~~d~g~~~~C~v~h~~l~ 70 (82)
T cd05761 2 VELTCTSSGSKPAATIRWFKGDKELKGVK----LKEEDENGKTFTVTSSLRFQVDREDDGAPIICRVDHPALK 70 (82)
T ss_pred EEEEEEecCcCcCCeEEEEECCEEccCce----eeEecCCCCEEEEEEEEEEEcchhhCCCEEEEEEeChhcC
Confidence 5799999765 888999999998874211 0111111 224556666667778999999987643
No 309
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=97.62 E-value=0.34 Score=59.24 Aligned_cols=241 Identities=13% Similarity=0.044 Sum_probs=129.3
Q ss_pred CCCCCeEEEEEE--EeCCceEEEEEEEEEEeeccccccCCCceEEecCCcEEEEEeCCCCCCCCeEEEEECCEEeccCCC
Q psy15127 131 GPQDEGLYICDV--ENLVGSISLRASLTVHLLRDDFRAEPKDTRVASGETALLECGPPKGQPEPTLHWKKNGQFIDLESS 208 (633)
Q Consensus 131 ~~~d~G~Y~C~~--~n~~g~~s~~~~l~V~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~i~W~~~~~~~~~~~~ 208 (633)
...+.|.|.-.+ .|..|..+....+.|.++-..+.+......+..|+.+.|.-. .......++.|..++..-.....
T Consensus 1665 t~~~pG~Y~VtL~aSN~vG~~t~s~~i~v~epi~~L~L~aS~~~aavn~~V~fs~~-lt~GS~vty~W~~gdG~s~~~s~ 1743 (2740)
T TIGR00864 1665 NPLEAGPCDIFLQAANLLGQATADCTIDFLEPAGNLMLQASDNPAAVNALINLSAE-LAEGSGLQYRWFLEEGDDLETSE 1743 (2740)
T ss_pred ecCCCceEEEEEEEeecccceeeEEEEEEEEEcCceEEeccCCcccCCCeEEEEEE-ecCCCCcEEEEEECCCCCcccCC
Confidence 447789988875 588898888888888887555655656666778999998876 45556789999875532111111
Q ss_pred eeEEeccceeeeEEEeeeEEE--EeecCCCCCCccc---ccccce-----------eEEecCCceEEEEEEEeeecCCee
Q psy15127 209 KSLDLSRRTLGWLRVRPLYWN--VARPRANLNPRYI---GRKMAS-----------LLIWNHPRVNRLSCFAEGSPLPSV 272 (633)
Q Consensus 209 ~~~~~~~~~~~~~~~~g~y~C--~a~~~~~~~p~~~---~~~~~~-----------~~~~~~g~~~~l~C~~~g~p~~~v 272 (633)
..+.. .+...|.|.- .|.|..+...... +..... ...+..|..+.|.-.+.-.....+
T Consensus 1744 p~~tH------tf~~~G~y~VtVta~N~vss~~~s~~V~VqepV~GL~i~~~~~~~~~~~~ag~~v~F~a~vstGsnVsw 1817 (2740)
T TIGR00864 1744 PFMSH------SFPSAGLHLVTMKAFNELGSANASEEVDVQEPISGLKIRAADAGEQNFFAADSSVCFQGELATGTNVSW 1817 (2740)
T ss_pred CceEE------EccCCceEEEEEEEEccccccceeEEEEEEeccccceEecCCCCcccceecCcEEEEEEEccCCCeeEE
Confidence 11111 1112344433 3444444221100 000000 001223444555544432333466
Q ss_pred EEEECCEEEEeccCCccceEEEccCceEEEcCCCCCCCeEEEEE--EEeCCceeEEEEEEEEEecccCC-----Cce---
Q psy15127 273 FWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCS--ALSVAGSTTVRAFLQVREFCVLP-----KGT--- 342 (633)
Q Consensus 273 ~W~~~g~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~--a~n~~g~~~~~~~l~v~~~~~~p-----~p~--- 342 (633)
.|..++..-. ...+-. .+..+.|.|+-. |.|..+....+..+.|++...-- +..
T Consensus 1818 ~W~f~~g~s~-----------~gk~v~-----~Tf~~aG~ytV~L~AsN~vs~~~~s~~~~VQe~I~~L~L~as~~~~~~ 1881 (2740)
T TIGR00864 1818 CWAIDGGSSK-----------MGKHAC-----MTFPDAGTFAIRLNASNAVSGKSASREFFAEEPIFGLELKASKKIAAI 1881 (2740)
T ss_pred EEEeCCCCcc-----------ccceeE-----EecCCCeEEEEEEEEEcccCcceeeeeEEEEEecceEEEecccccccC
Confidence 7776653211 001111 344578999764 68999988888888888642100 000
Q ss_pred -----E----EeCCCcc---ccCCCCC------ceEEecccccCCEEEEEEEEcCCcceeEEEEEEeecC
Q psy15127 343 -----F----TLGQPNL---ATGNSDL------RRIACDLRETDSGLYTCTASSESGETSWSASLSVEPR 394 (633)
Q Consensus 343 -----~----~~~~~~~---~~g~p~~------~~~i~~~~~~d~g~y~c~a~n~~g~~~~~~~l~v~~~ 394 (633)
+ .++.... ..|+..+ ......+.+-..+.....|.|.++..+....+.|..+
T Consensus 1882 n~~v~fsa~l~~GS~Vtf~w~fGdgs~~~~t~~~t~~HsY~~~G~Y~VtV~A~N~Vs~~~a~~~V~Vle~ 1951 (2740)
T TIGR00864 1882 GEKVEFQILLAAGSAVNFRLQIGGAAPEVLQPGPRFSHSFPRVDDHMVNLRAKNEVSCAQANLHIEVLEA 1951 (2740)
T ss_pred CCEEEEEEEecCCCceEEEEEeCCCCceeecCCCeEEeecCCCCcEEEEEEEEeccceeeeeEEEEEEEe
Confidence 0 0111000 0022111 1233455566677778889999999888888777654
No 310
>cd04980 IgV_L_kappa Immunoglobulin (Ig) light chain, kappa type, variable (V) domain. IgV_L_kappa: Immunoglobulin (Ig) light chain, kappa type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.
Probab=97.62 E-value=0.00023 Score=57.56 Aligned_cols=74 Identities=20% Similarity=0.260 Sum_probs=49.4
Q ss_pred ceeEEecCCceEEEEEEEeeec-CCeeEEEECC--E---EEEecc----CCccceEEEcc---CceEEEcCCCCCCCeEE
Q psy15127 247 ASLLIWNHPRVNRLSCFAEGSP-LPSVFWTQEG--S---QVLMFP----GNAYGHLHVTQ---EGTLRIQGVQKEDAGFF 313 (633)
Q Consensus 247 ~~~~~~~~g~~~~l~C~~~g~p-~~~v~W~~~g--~---~~~~~~----~~~~~~~~~~~---~~~l~i~~~~~~d~G~Y 313 (633)
+..+.+.+|++++|.|.+.+.. ...+.|+|.. + .+.... .....++.... ...|.|.++..+|+|.|
T Consensus 7 p~~~~v~~G~~v~L~C~~~~~~~~~~~~Wyrq~~g~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~~~~~Dsg~Y 86 (106)
T cd04980 7 PATLSVSPGESATISCKASQSVSSNYLAWYQQKPGQAPKLLIYGASTLASGTPSRFSGSGSGTDFTLTISRVEPEDAAVY 86 (106)
T ss_pred CCcEEECCCCCEEEEEEECCCCCCCcEEEEEECCCCCcEEEEECccccCCCCCCCEEEeccCCEEEEEECCCChHHCEEE
Confidence 3456778999999999997765 5689999743 1 111110 01112344322 23699999999999999
Q ss_pred EEEEEeC
Q psy15127 314 VCSALSV 320 (633)
Q Consensus 314 ~C~a~n~ 320 (633)
.|.+.+.
T Consensus 87 ~Ca~~~~ 93 (106)
T cd04980 87 YCQQYGT 93 (106)
T ss_pred EEEEeCC
Confidence 9998653
No 311
>PF08205 C2-set_2: CD80-like C2-set immunoglobulin domain ; InterPro: IPR013162 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the C2-set type domains found in the T-cell antigen CD80, as well as in related proteins. CD80 (B7-1) is a glycoprotein expressed on antigen-presenting cells []. The shared ligands on CD80 and CD86 (B7-2) deliver the co-stimulatory signal through CD28 and CTLA-4 on T-cells, where CD28 augments the T-cell response and CTLA-4 attenuates it [].; PDB: 3S58_A 3O3U_N 3CJJ_A 3S59_A 2PF6_B 2PET_A 3ALP_A 3SKU_D 3U83_A 3U82_B ....
Probab=97.62 E-value=0.00015 Score=56.49 Aligned_cols=63 Identities=21% Similarity=0.377 Sum_probs=43.6
Q ss_pred CCeEEEEEEEe-ccCCCeEEEEeCCccCCCCC--eE-------EcccceEEEccCCCCCCeEEEEEEEeCCce
Q psy15127 86 GSVVEFVCRVG-GDPLPTILWRRDDGKMPTGR--AK-------ILDDRSLQIENVGPQDEGLYICDVENLVGS 148 (633)
Q Consensus 86 G~~~~L~C~~~-~~p~p~i~W~~~~~~i~~~~--~~-------~~~~~~L~i~~v~~~d~G~Y~C~~~n~~g~ 148 (633)
|+.+.|.|.+. +.|.|.|+|+.++..+.... .. ....+.|.+..-..++...++|.|.+....
T Consensus 14 ~~~~~~~C~s~~~~P~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~S~l~~~~~~~~~~~~~~C~~~~~~~~ 86 (89)
T PF08205_consen 14 GEEVTLTCSSSGGYPPPQITWYLDGGPVVASNTTQSSSPDNGLFTVSSTLTLTPTREDHGKTLTCRASHPALS 86 (89)
T ss_dssp TEEEEEEEEEEEEBS-EEEEEEETTCEECEEEEEEEEETTTTTEEEEEEEEEETTGGGTTEEEEEEEEETTCC
T ss_pred ceEEEEEEEeCCeECCeEEEEEECCCceeeeeeeeeeccCCCcceEEEEEEEEcChHHCCeEEEEEEECCccC
Confidence 78999999874 68999999999998772110 00 111246777665567888999999987543
No 312
>cd05901 Ig_Versican Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican. Ig_Versican: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Like aggrecan, versican has a wide distribution in connective tissue and extracellular matrices. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA
Probab=97.60 E-value=0.0012 Score=53.33 Aligned_cols=80 Identities=24% Similarity=0.376 Sum_probs=55.7
Q ss_pred CceEEEEEEEeeec-----------CCeeEEEEC-----CE-----EEEecc-------CCccceEEEc------cCceE
Q psy15127 255 PRVNRLSCFAEGSP-----------LPSVFWTQE-----GS-----QVLMFP-------GNAYGHLHVT------QEGTL 300 (633)
Q Consensus 255 g~~~~l~C~~~g~p-----------~~~v~W~~~-----g~-----~~~~~~-------~~~~~~~~~~------~~~~l 300 (633)
+.+++|.|...-.| ...|.|++- |. .+.... ..-.+|.... .+.+|
T Consensus 2 ~g~v~LPC~f~~~p~~p~~~~~~~~~~rIkW~~~~~~~~g~~~~e~~Vlv~~~g~~~~~~~y~gRv~l~~~~~~~g~asL 81 (117)
T cd05901 2 SGSVVLPCRFSTLPTLPPSVITTSEFLRIKWTKIEVDKNGKDHKETTVLVAQNGIIKIGQEYMGRVSVPSHPEDQGDASL 81 (117)
T ss_pred CCCEEEeeEEEecCCCCCcccCCCCCcEEEEEEecccccccCCCccEEEEEECCEEEECCcccCcEEeeccCCcCCceEE
Confidence 47889999998544 237899873 11 111111 1122344442 34589
Q ss_pred EEcCCCCCCCeEEEEEEEeCCceeEEEEEEEEEe
Q psy15127 301 RIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVRE 334 (633)
Q Consensus 301 ~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~ 334 (633)
.|.+++..|+|.|.|++.+.....+..+.|.|..
T Consensus 82 ~i~~v~~sD~G~Y~C~V~~g~~~~~~~v~L~V~G 115 (117)
T cd05901 82 TIVKLRASDAGVYRCEVMHGIEDTQDTVSLDVSG 115 (117)
T ss_pred EEcccccccCEEEEEEEEECCcccEEEEEEEEEE
Confidence 9999999999999999999988888888888864
No 313
>cd04982 IgV_TCR_gamma Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) gamma chain. IgV_TCR_gamma: immunoglobulin (Ig) variable (V) domain of the gamma chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is
Probab=97.58 E-value=0.00026 Score=58.34 Aligned_cols=73 Identities=19% Similarity=0.390 Sum_probs=50.0
Q ss_pred ceeEEecCCceEEEEEEEee--ecCCeeEEEEC--CEE---EE-eccC--------CccceEEEc-----cCceEEEcCC
Q psy15127 247 ASLLIWNHPRVNRLSCFAEG--SPLPSVFWTQE--GSQ---VL-MFPG--------NAYGHLHVT-----QEGTLRIQGV 305 (633)
Q Consensus 247 ~~~~~~~~g~~~~l~C~~~g--~p~~~v~W~~~--g~~---~~-~~~~--------~~~~~~~~~-----~~~~l~i~~~ 305 (633)
+..+...+|+.++|.|.+.+ .+.+.+.|++. |.. +. .... ....++.+. ....|.|.++
T Consensus 5 p~~~~~~~G~~v~l~C~~~~~~~~~~~v~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~~ 84 (116)
T cd04982 5 QLSITREESKSVTISCKVSGIDFSTTYIHWYRQKPGQALERLLYVSSTSTQRKLSGGTKNKFEARKDVGKSTSTLTIQNL 84 (116)
T ss_pred CCeEEeCCCCCEEEEEEEeCCCccccEEEEEEECCCCCCEEEEEEecCCCcEEeCcccCCCEEEEEECCCCEEEEEEEEC
Confidence 34566788999999999977 67789999985 221 11 1110 012344433 2237999999
Q ss_pred CCCCCeEEEEEEEe
Q psy15127 306 QKEDAGFFVCSALS 319 (633)
Q Consensus 306 ~~~d~G~Y~C~a~n 319 (633)
+.+|+|.|.|.+..
T Consensus 85 ~~~Dsg~Y~C~~~~ 98 (116)
T cd04982 85 EKEDSATYYCAYWE 98 (116)
T ss_pred CHHHCEEEEEEEec
Confidence 99999999999864
No 314
>KOG4258|consensus
Probab=97.57 E-value=0.00049 Score=72.18 Aligned_cols=133 Identities=17% Similarity=0.251 Sum_probs=92.3
Q ss_pred EEeeCCeEEEEeCCCCCCCCCCcceeEEEEEEEEec-------------CCCCeEEEEEeee--------eceEEEecCC
Q psy15127 419 LNTTRGSVTLGWGEPEPRGGGVAPVIGYTVEYFSSD-------------LQTGWVVAAHRIT--------STSITVSDLK 477 (633)
Q Consensus 419 ~~~~~~~i~l~W~~~~~~~~~~~~i~~Y~v~~~~~~-------------~~~~~~~~~~~~~--------~~~~~i~~L~ 477 (633)
...+.+++.|+|..-...+ -....+|.+.|+..- ....|........ ..-+.+.+|+
T Consensus 497 ~~~~~dsi~lrW~~~~~~d--~r~llg~~~~yKEaP~qNvT~~dg~~aCg~~~W~~~~v~~~~~~p~~~~~~~~~l~~Lk 574 (1025)
T KOG4258|consen 497 TVTSADSILLRWERYQPPD--MRDLLGFLLHYKEAPFQNVTEEDGRDACGSNSWNVVDVDPPDLIPNDGTHPGFLLDGLK 574 (1025)
T ss_pred EEeecceeEEEecccCCcc--hhhhheeeEeeccCCccccceecCccccccCcceEEeccCCcCCCccccccceehhcCC
Confidence 3456789999999766543 345889999988431 1234655443322 1257889999
Q ss_pred CCCeEEEEEEEEe--ccccC--CCCCCCCceeecCCCCCCCcchHHHHHHHhCCceEEeeeeeecccceEEEEEEEecCC
Q psy15127 478 PDTSYMFIVRAEN--SHGLG--IPSPVSPITRTLGLNSLVPQHLLDEARARLGTKVVNLRELIPTASTAVRITWEVSWGS 553 (633)
Q Consensus 478 p~~~Y~~~v~a~n--~~G~g--~~s~~~~~~~t~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~si~v~W~~p~~~ 553 (633)
|.|.|-+-|.+.. .++.. ..|... .++|..+.|++|-... ...-+++.|.|+|++|
T Consensus 575 P~TqYAvfVkT~t~t~~~~~~~A~S~I~-YvqT~~~~PspPl~~l----------------s~snsSsqi~l~W~pP--- 634 (1025)
T KOG4258|consen 575 PWTQYAVFVKTLTVTEAHEAYEAKSKIG-YVQTLPDIPSPPLDVL----------------SKSNSSSQILLKWKPP--- 634 (1025)
T ss_pred ccceeEEEEeeeehhhhccccccccceE-EEEecCCCCCCcchhh----------------hccCcchheeEEecCC---
Confidence 9999999999872 23332 235554 6899999988887652 2233456899999977
Q ss_pred CcccccchhhhhcceeEEEEEEcCCC
Q psy15127 554 VPQHLLDEARARLGTKVVNLRELIPT 579 (633)
Q Consensus 554 ~p~~~~~~~~~i~~y~~i~~~~~~~~ 579 (633)
..++|.++.| .+.|+....+
T Consensus 635 -----~~pNG~lt~Y-lv~wer~~~~ 654 (1025)
T KOG4258|consen 635 -----SQPNGNLTHY-LVVWERQAED 654 (1025)
T ss_pred -----CCCCCceeEE-EEEEEeccCC
Confidence 7889999999 9988765443
No 315
>cd05755 Ig2_ICAM-1_like Second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54) and similar proteins. Ig2_ ICAM-1_like: domain similar to the second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54). During the inflammation process, these molecules recruit leukocytes onto the vascular endothelium before extravasation to the injured tissues. ICAM-1 may be involved in organ targeted tumor metastasis. The interaction of ICAM-1 with leukocyte function-associated antigen-1 (LFA-1) plays a part in leukocyte-endothelial cell recognition. This group also contains ICAM-2, which also interacts with LFA-1. Transmigration of immature dendritic cells across resting endothelium is dependent on the interaction of ICAM-2 with, yet unidentified, ligand(s) on the dendritic cells. ICAM-1 has five Ig-like domains and ICAM-2 has two. ICAM-1 may also act as host receptor for viruses and parasites.
Probab=97.56 E-value=0.00048 Score=53.97 Aligned_cols=41 Identities=15% Similarity=0.302 Sum_probs=33.1
Q ss_pred cccCCCceEEecCCcEEEEEeCCCCCCCCe--EEEEECCEEec
Q psy15127 164 FRAEPKDTRVASGETALLECGPPKGQPEPT--LHWKKNGQFID 204 (633)
Q Consensus 164 ~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~--i~W~~~~~~~~ 204 (633)
+.+.+....+.+|+.++|.|.+..+.|.+. |.|++++..+.
T Consensus 4 V~l~~~p~~~~eG~~~tL~C~v~g~~P~a~L~i~W~rG~~~l~ 46 (100)
T cd05755 4 VELSPLPSWQPVGKNYTLQCDVPGVAPRQNLTVVLLRGNETLS 46 (100)
T ss_pred EEEecCCCcccCCCcEEEEEEEcCcCCCCcEEEEEeeCCEEcc
Confidence 344555556789999999999888899886 79999988775
No 316
>cd05846 Ig1_MRC-OX-2_like First immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200) and similar proteins. Ig1_ MRC-OX-2_like: domain similar to the first immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200). MRC OX-2 is a membrane glycoprotein expressed in a variety of lymphoid and non-lymphoid cells in rats. It has a similar broad distribution pattern in humans. MRC OX-2 may regulate myeloid cell activity. The protein has an extracellular portion containing two Ig-like domains, a transmembrane portion, and a cytoplasmic portion.
Probab=97.53 E-value=0.00063 Score=53.88 Aligned_cols=78 Identities=21% Similarity=0.279 Sum_probs=50.2
Q ss_pred CceEEEEEEEeeecCC-eeEEEECCE----EEEec-c--C----Cc-cceEEE----ccCceEEEcCCCCCCCeEEEEEE
Q psy15127 255 PRVNRLSCFAEGSPLP-SVFWTQEGS----QVLMF-P--G----NA-YGHLHV----TQEGTLRIQGVQKEDAGFFVCSA 317 (633)
Q Consensus 255 g~~~~l~C~~~g~p~~-~v~W~~~g~----~~~~~-~--~----~~-~~~~~~----~~~~~l~i~~~~~~d~G~Y~C~a 317 (633)
|++++|.|........ .+.|+|... .+... . + .. ..+... ..+.+|.|.+++.+|+|.|.|.+
T Consensus 1 G~~vtL~C~~~~~~~~~~v~W~k~~~~~~~~i~~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~nv~~~D~G~Y~C~~ 80 (97)
T cd05846 1 GGNVTLSCNLTLPEEVLQVTWQKIQGSSPENIATYSEKYGVKIQPSYFRRRSITSLGLNSTSITIWNVTLEDEGCYKCIF 80 (97)
T ss_pred CCcEEEEEEeCCCCeeEEEEEEEcCCCCceEEEEEcccCCcccCCCccCeEEEcCCCCCccEEEEeCCceeeeEEEEEEE
Confidence 6789999987654433 699998532 11111 1 0 01 112222 13447999999999999999998
Q ss_pred E-eCCceeEEEEEEEE
Q psy15127 318 L-SVAGSTTVRAFLQV 332 (633)
Q Consensus 318 ~-n~~g~~~~~~~l~v 332 (633)
. .+.|..+..+.|+|
T Consensus 81 ~~~p~g~~~~~~~L~v 96 (97)
T cd05846 81 NTFPDGSKSGTMCLTV 96 (97)
T ss_pred EeCCCCCeeeEEEEEE
Confidence 6 45677777777765
No 317
>PHA02987 Ig domain OX-2-like protein; Provisional
Probab=97.49 E-value=0.00081 Score=58.07 Aligned_cols=87 Identities=14% Similarity=0.232 Sum_probs=60.8
Q ss_pred eeEEecCCceEEEEEEEe-eecCCeeEEEECCEEEEeccCC------cc-ceEEE----ccCceEEEcCCCCCCCeEEEE
Q psy15127 248 SLLIWNHPRVNRLSCFAE-GSPLPSVFWTQEGSQVLMFPGN------AY-GHLHV----TQEGTLRIQGVQKEDAGFFVC 315 (633)
Q Consensus 248 ~~~~~~~g~~~~l~C~~~-g~p~~~v~W~~~g~~~~~~~~~------~~-~~~~~----~~~~~l~i~~~~~~d~G~Y~C 315 (633)
..+.+.+|++++|.|... +...+.+.|.|....+...... .+ .|+.. ..+..|+|.+++.+|+|.|.|
T Consensus 23 ~~v~V~ege~VtLsCs~t~s~~~~qVtWkK~~~~IatY~~~g~~i~~~Fk~Rve~mS~s~~~StItIknVt~sDeGcY~C 102 (189)
T PHA02987 23 VKITVSEHVNVKISCNKTSSFNSILITWKKNNKTIAGYGPCGPVIVDKFKNKIEYLSKSFNESTILIKNVSLKDNGCYTC 102 (189)
T ss_pred EEEEEcCCCCEEEEEecCCCCccceEEEEEcCCCEEEEecCCcEEChhhcCeEEEeccCCCcceEEEEeCChhhCeEEEE
Confidence 345678899999999984 5567899999975443322211 11 23332 134579999999999999999
Q ss_pred EEEe-CCc-eeEEEEEEEEEe
Q psy15127 316 SALS-VAG-STTVRAFLQVRE 334 (633)
Q Consensus 316 ~a~n-~~g-~~~~~~~l~v~~ 334 (633)
.... +.| ..+..+-|.|..
T Consensus 103 ~F~tfp~G~~~~gt~CLtVt~ 123 (189)
T PHA02987 103 IFNTLLSKNNEKGVVCLNVTT 123 (189)
T ss_pred EEEecCCCCCceeEEEEEEEc
Confidence 9854 446 677778888874
No 318
>cd07705 Ig2_Necl-1 Second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). Ig2_Necl-1: second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue and is important to the formation of synapses, axon bundles, and myel
Probab=97.48 E-value=0.00048 Score=52.50 Aligned_cols=61 Identities=16% Similarity=0.310 Sum_probs=41.4
Q ss_pred EEEEEEEeee-cCCeeEEEECCEEEEeccCCccceEEEccC-------ceEEEcCCCCCCCeEEEEEEEeCCc
Q psy15127 258 NRLSCFAEGS-PLPSVFWTQEGSQVLMFPGNAYGHLHVTQE-------GTLRIQGVQKEDAGFFVCSALSVAG 322 (633)
Q Consensus 258 ~~l~C~~~g~-p~~~v~W~~~g~~~~~~~~~~~~~~~~~~~-------~~l~i~~~~~~d~G~Y~C~a~n~~g 322 (633)
++|.|.+.|. |.+.|+|+++|..+... . .......+ +.|.+.....+|...|+|+|.+...
T Consensus 2 ~~LtC~a~g~~P~~~ItW~k~g~~l~~~---~-~~~~~~~~~~t~~~~s~l~~~~~~~d~g~~~tC~v~h~~l 70 (83)
T cd07705 2 AKLRCTSSGSKPAANIKWRKGDQELEGA---P-TSVLEDGNGKTFTVSSSVEFQVTREDDGAEITCSVGHESL 70 (83)
T ss_pred EEEEEEecCccCCCEeEEEECCEECCCc---c-eeEEECCCCCEEEEEEEEEEEecchhCCCEEEEEEECccc
Confidence 5799999775 88899999999876421 1 11122222 2355555566778999999988753
No 319
>PHA03273 envelope glycoprotein C; Provisional
Probab=97.47 E-value=0.0082 Score=59.05 Aligned_cols=78 Identities=19% Similarity=0.263 Sum_probs=58.4
Q ss_pred eEEEccCCCCCCeEEEEEEEeCCceEE--EEEEEEEEeeccccccCCCceEEecCCcEEEEEeCCCCCCCC--eEEEEEC
Q psy15127 124 SLQIENVGPQDEGLYICDVENLVGSIS--LRASLTVHLLRDDFRAEPKDTRVASGETALLECGPPKGQPEP--TLHWKKN 199 (633)
Q Consensus 124 ~L~i~~v~~~d~G~Y~C~~~n~~g~~s--~~~~l~V~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~--~i~W~~~ 199 (633)
.|+|..++..++|.|+=.+.+..+... ..+.|....+ |.+.+.+ ..+.+|+...-.|.+...+|.. .+.|++|
T Consensus 199 ~LtI~sltaaTeGvYtWr~~~~n~t~~~~~~VtV~~yr~-Psvsv~~--~PvL~Ge~y~A~C~aa~YYPp~Sv~~rWf~d 275 (486)
T PHA03273 199 PLTIKSVDWRTAGVYVWSLYAKNGTLVNSTSVTVSTYNA-PLVDLSV--HPSLKGENYRAVCVVASYFPHSSVKLRWYKN 275 (486)
T ss_pred ceEEEecchhhceEEEEEEecCCCceeeeeEEEEEEecC-CcccccC--CccccCCCceEEEEeeeecCCCceEEEEEeC
Confidence 499999999999999877655544433 3444444555 6555444 3578999999999987777764 8999999
Q ss_pred CEEec
Q psy15127 200 GQFID 204 (633)
Q Consensus 200 ~~~~~ 204 (633)
|.++.
T Consensus 276 g~~V~ 280 (486)
T PHA03273 276 AKEVD 280 (486)
T ss_pred Ceecc
Confidence 99988
No 320
>cd04984 IgV_L_lambda Immunoglobulin (Ig) lambda light chain variable (V) domain. IgV_L_lambda: Immunoglobulin (Ig) light chain, lambda type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.
Probab=97.45 E-value=0.00039 Score=55.24 Aligned_cols=68 Identities=16% Similarity=0.277 Sum_probs=45.6
Q ss_pred ecCCceEEEEEEEeee--cCCeeEEEECCE--E---EEecc----CCccceEEEcc---CceEEEcCCCCCCCeEEEEEE
Q psy15127 252 WNHPRVNRLSCFAEGS--PLPSVFWTQEGS--Q---VLMFP----GNAYGHLHVTQ---EGTLRIQGVQKEDAGFFVCSA 317 (633)
Q Consensus 252 ~~~g~~~~l~C~~~g~--p~~~v~W~~~g~--~---~~~~~----~~~~~~~~~~~---~~~l~i~~~~~~d~G~Y~C~a 317 (633)
+..|++++|.|...+. ....+.|++... . +.... .....++.... ...|.|.+++.+|+|.|.|.+
T Consensus 3 v~~G~~v~l~C~~~~~~~~~~~i~Wy~q~~g~~~~~l~~~~~~~~~~~~~rf~~~~~~~~~~L~I~~~~~~Dsg~Y~C~~ 82 (98)
T cd04984 3 VSPGETVTITCTGSSGNISGNYVNWYQQKPGSAPRYLIYEDSDRPSGIPDRFSGSKSGNTASLTISGAQTEDEADYYCQV 82 (98)
T ss_pred cCCCCCEEEEEEEcCCCcCCCCEEEEEECCCCCccEEEEeccccCCCCCCCEEEEccCCEEEEEECCCChhhCEEEEEEE
Confidence 5678999999998765 456799987432 1 11110 01123444332 236999999999999999998
Q ss_pred Ee
Q psy15127 318 LS 319 (633)
Q Consensus 318 ~n 319 (633)
.+
T Consensus 83 ~~ 84 (98)
T cd04984 83 WD 84 (98)
T ss_pred cc
Confidence 65
No 321
>PHA03270 envelope glycoprotein C; Provisional
Probab=97.38 E-value=0.015 Score=56.76 Aligned_cols=80 Identities=15% Similarity=0.223 Sum_probs=61.8
Q ss_pred ceEEEccCCCCCCeEEEEEEEeCCce--EEEEEEEEEEeeccccccCCCceEEecCCcEEEEEeCCCCCCCC--eEEEEE
Q psy15127 123 RSLQIENVGPQDEGLYICDVENLVGS--ISLRASLTVHLLRDDFRAEPKDTRVASGETALLECGPPKGQPEP--TLHWKK 198 (633)
Q Consensus 123 ~~L~i~~v~~~d~G~Y~C~~~n~~g~--~s~~~~l~V~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~--~i~W~~ 198 (633)
..|.|..++...+|.|+=.+-+..+. ..+.+.|....+ |.+.+.+. .+.+|+...-.|.+...+|.- .+.|++
T Consensus 182 ~~L~I~slt~aTeGvY~Wr~~~~~~~~~~~~~VtV~~yr~-Psvsv~~~--PvL~Ge~Y~AtC~va~YYPp~Sv~lrWf~ 258 (466)
T PHA03270 182 QRLVIQELTLATQGMYYWARGPADRPHRYGTWTRVRMFRR-PSLSIRPH--AVLEGEPFGATCVAANYYPGDRAAFRWFE 258 (466)
T ss_pred ceEEEEEcccccceEEEEEEecCCCceeeeeEEEEEEecC-CcccccCC--ccccCCCceEEEEeeeecCCCceEEEEEe
Confidence 46999999999999999998765554 345555665555 66554443 478999999999988877765 899999
Q ss_pred CCEEecc
Q psy15127 199 NGQFIDL 205 (633)
Q Consensus 199 ~~~~~~~ 205 (633)
||.++..
T Consensus 259 ng~~V~~ 265 (466)
T PHA03270 259 GGDEVFA 265 (466)
T ss_pred CCccccC
Confidence 9998863
No 322
>cd05720 Ig_CD8_alpha Immunoglobulin (Ig) like domain of CD8 alpha chain. Ig_CD8_alpha: immunoglobulin (Ig)-like domain in CD8 alpha. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alphaalpha or alphabeta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a v-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain. The Ig domain of CD8 alpha binds to antibodies.
Probab=97.37 E-value=0.00052 Score=55.07 Aligned_cols=62 Identities=23% Similarity=0.329 Sum_probs=43.0
Q ss_pred EEEcCCeEEEEEEEeccCCCeEEEEeCCc----cC------CC-------------CCeEE---cccceEEEccCCCCCC
Q psy15127 82 TVLSGSVVEFVCRVGGDPLPTILWRRDDG----KM------PT-------------GRAKI---LDDRSLQIENVGPQDE 135 (633)
Q Consensus 82 ~~~~G~~~~L~C~~~~~p~p~i~W~~~~~----~i------~~-------------~~~~~---~~~~~L~i~~v~~~d~ 135 (633)
.+.+|++++|.|.........+.|+|... .. .. .++.. .....|+|.+++.+|+
T Consensus 2 ~v~~G~~vtL~C~~~~~~~~~v~Wyrq~~g~~~~~~~l~~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~L~I~~~~~sDs 81 (104)
T cd05720 2 DAELGQKVELKCEVLNSSPTGCSWLFQPPGSAPQPTFLVYLSGSSKITWDEEELSSKRFSGSRSSNSFVLTLKNFQKENE 81 (104)
T ss_pred cccCCCeEEEEEEecCCCCCcEEEEEeCCCCCCCCEEEEEEeCCCCeeeccccCCCceEEEEecCCEEEEEECCCCHHHC
Confidence 47899999999998654445699998542 11 00 01111 0123699999999999
Q ss_pred eEEEEEEE
Q psy15127 136 GLYICDVE 143 (633)
Q Consensus 136 G~Y~C~~~ 143 (633)
|.|.|.+.
T Consensus 82 gtY~Ca~~ 89 (104)
T cd05720 82 GYYFCSVA 89 (104)
T ss_pred EEEEEEEc
Confidence 99999875
No 323
>cd05711 Ig_FcalphaRI Immunoglobulin (IG)-like domain of of FcalphaRI. IG_FcalphaRI : immunoglobulin (IG)-like domain of of FcalphaRI. FcalphaRI (CD89) is an IgA-specific receptor that is expressed on monocytes, eosinophils, neutrophils and macrophages. FcalphaRI mediates IgA-induced immune effector responses such as phagocytosis, antibody-dependent cell-mediated cytotoxicity and respiratory burst. Both monomeric and dimeric IgA can bind to FcalphaRI, and monomeric or dimeric IgA immune complexes can activate phagocytosis and other immune responses through the clustering of FcalphaRI. The Fc RI ectodomain is comprised of two Ig-like domains oriented at about 90 degree to each another.
Probab=97.37 E-value=0.00039 Score=54.58 Aligned_cols=66 Identities=14% Similarity=0.165 Sum_probs=44.9
Q ss_pred EEecCCceEEEEEEEeeecCCeeEEEECCEEEEeccCCccceEEEccCceEEEcCCCCCCCeEEEEEEE
Q psy15127 250 LIWNHPRVNRLSCFAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSAL 318 (633)
Q Consensus 250 ~~~~~g~~~~l~C~~~g~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~ 318 (633)
.++.+|++|+|.|.... +...+.|+|+|......... ..........+.|..++.+|+|.|.|...
T Consensus 10 ~vV~~G~~VTL~C~~~~-~~~~f~l~k~g~~~~~~~~~--~~~~~~~~a~f~I~~~~~~~~G~Y~C~~~ 75 (94)
T cd05711 10 PVVPSGENVTLQCHSDI-RFDRFILYKEGRSKPVLHLY--EKHHGGFQASFPLGPVTPAHAGTYRCYGS 75 (94)
T ss_pred CccCCCCeEEEEEecCC-CCCEEEEEECCCCCCceecc--cccCCeEEEEEEecCCCcccCEEEEEEEE
Confidence 45668999999998755 55689999998653210000 00001123378999999999999999974
No 324
>smart00407 IGc1 Immunoglobulin C-Type.
Probab=97.37 E-value=0.00083 Score=50.14 Aligned_cols=57 Identities=25% Similarity=0.441 Sum_probs=39.7
Q ss_pred EEEEEEEecc-CC-CeEEEEeCCccCCCCCeE----Eccc------ceEEEccCCCCCCeEEEEEEEeC
Q psy15127 89 VEFVCRVGGD-PL-PTILWRRDDGKMPTGRAK----ILDD------RSLQIENVGPQDEGLYICDVENL 145 (633)
Q Consensus 89 ~~L~C~~~~~-p~-p~i~W~~~~~~i~~~~~~----~~~~------~~L~i~~v~~~d~G~Y~C~~~n~ 145 (633)
++|.|.+.|. |. ..++|+|+|+++..+... ...+ +.|.|.....++...|+|.|...
T Consensus 2 ~~L~C~a~gf~P~~i~v~W~k~g~~~~~~~~~~~~~~~~~gt~~~~s~L~v~~~~~~~~~~~tC~V~H~ 70 (75)
T smart00407 2 ATLVCLVSGFYPPDITVTWLRNGQEVTSGVSTTDPLKNSDGTYFLSSYLTVSASTWESGDTYTCQVTHE 70 (75)
T ss_pred eEEEEEEEeEeCCCCEEEEEECCEECCCCEEECceEECCCCCEEEEEEEEEccccCCCCCEEEEEEEEc
Confidence 6899999885 44 589999999875432111 1112 35777666778889999999764
No 325
>PHA03269 envelope glycoprotein C; Provisional
Probab=97.36 E-value=0.015 Score=57.49 Aligned_cols=79 Identities=20% Similarity=0.187 Sum_probs=59.4
Q ss_pred eEEEccCCCCCCeEEEEEEEeCC-ce--EEEEEEEEEEeeccccccCCCceEEecCCcEEEEEeCCCCCCCC--eEEEEE
Q psy15127 124 SLQIENVGPQDEGLYICDVENLV-GS--ISLRASLTVHLLRDDFRAEPKDTRVASGETALLECGPPKGQPEP--TLHWKK 198 (633)
Q Consensus 124 ~L~i~~v~~~d~G~Y~C~~~n~~-g~--~s~~~~l~V~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~--~i~W~~ 198 (633)
.|.|.+++..++|.|+=++.+.. +. .+..+.|.+..+ |.+.+.+ ..+.+|+...-.|.+...+|.. .+.|++
T Consensus 290 pL~I~sltaATeGvY~Wrv~~~~n~t~~~~~~VtV~~yr~-PsVsV~p--~PVL~Ge~YkAtC~vA~YYPp~SvrlrWf~ 366 (566)
T PHA03269 290 SLHILSLDASTEGTYIWRVIHTANKNVINEHHITVMSYKR-PNITVIG--DPVLLGNPYAAYCKVNKYYPPHSVIVKWTS 366 (566)
T ss_pred ceEEeecccccCceEEEEEecCCCCceeeeeEEEEEEecC-CCccccC--CccccCCCceEEEEeeeecCCCceEEEEEe
Confidence 59999999999999987765322 22 345566666665 5554443 3578999999999987777764 899999
Q ss_pred CCEEecc
Q psy15127 199 NGQFIDL 205 (633)
Q Consensus 199 ~~~~~~~ 205 (633)
||.++..
T Consensus 367 ng~~V~~ 373 (566)
T PHA03269 367 NFGNIGK 373 (566)
T ss_pred CCcccCc
Confidence 9998874
No 326
>cd05884 Ig2_Necl-3 Second immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Ig2_Necl-3: second immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-3 has been shown to accumulate in tissues of the central and peripheral nervous system, where it is expressed in ependymal cells and myelinated axons. It is observed at the interface between the axon shaft and the myelin sheath. Ig domains are likely to participate in ligand binding and recognition.
Probab=97.35 E-value=0.00095 Score=50.80 Aligned_cols=63 Identities=16% Similarity=0.255 Sum_probs=41.6
Q ss_pred EEEEEEEee-ecCCeeEEEECCEEEEeccC-----CccceEEEccCceEEEcCCCCCCCeEEEEEEEeCCc
Q psy15127 258 NRLSCFAEG-SPLPSVFWTQEGSQVLMFPG-----NAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAG 322 (633)
Q Consensus 258 ~~l~C~~~g-~p~~~v~W~~~g~~~~~~~~-----~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g 322 (633)
++|.|.+.| +|...++|+++|..+..... ...+ .....+.|.+..-..++...|+|+|.+..-
T Consensus 2 ~~LtC~a~gf~P~~~itW~kng~~l~~~~~~~~~~~~~~--t~~~~s~L~~~~~~~d~g~~ytC~v~h~~l 70 (83)
T cd05884 2 MQLTCKTSGSKPAADIRWFKNDKEIKDVKYLKEEDANRK--TFTVSSTLDFRVDRSDDGVAIICRVDHESL 70 (83)
T ss_pred EEEEEEeCCccCCCEEEEEECCEECcCceeeEeeCCCCC--EEEEEEEEEEEcccccCCCEEEEEEechhc
Confidence 589999977 56679999999998642110 0000 111223567776667778899999987653
No 327
>cd07698 IgC_MHC_I_alpha3 Class I major histocompatibility complex (MHC) alpha chain immunoglobulin domain. IgC_MHC_I_alpha3; Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class I alpha chain. Class I MHC proteins bind antigenic peptide fragments and present them to CD8+ T lymphocytes. Class I molecules consist of a transmembrane alpha chain and a small chain called the beta2 microglobulin. The alpha chain contains three extracellular domains, two of which fold together to form the peptide-binding cleft (alpha1 and alpha2), and one which has an Ig fold (alpha3). Peptide binding to class I molecules occurs in the endoplasmic reticulum (ER) and involves both chaperones and dedicated factors to assist in peptide loading. Class I MHC molecules are expressed on most nucleated cells.
Probab=97.35 E-value=0.0011 Score=51.96 Aligned_cols=73 Identities=22% Similarity=0.310 Sum_probs=43.2
Q ss_pred CCeeeeCCCceEEEcCCeEEEEEEEecc-CCC-eEEEEeCCccCCCC----CeEEcccceE---EEccCCCCCCeEEEEE
Q psy15127 71 KPFPISEPSDATVLSGSVVEFVCRVGGD-PLP-TILWRRDDGKMPTG----RAKILDDRSL---QIENVGPQDEGLYICD 141 (633)
Q Consensus 71 ~p~~~~~~~~~~~~~G~~~~L~C~~~~~-p~p-~i~W~~~~~~i~~~----~~~~~~~~~L---~i~~v~~~d~G~Y~C~ 141 (633)
+|.+...+.... |+.++|.|.+.|. |.. .++|+++|+.+..+ ......++++ ....+..++.+.|+|.
T Consensus 2 pP~v~v~~~~~~---~~~~~L~C~a~gF~P~~i~v~W~~~g~~~~~~~~~~~~~~~~d~ty~~~s~l~v~~~~~~~ytC~ 78 (93)
T cd07698 2 PPEVRVTRKRAP---DGSLTLSCHATGFYPRDIEVTWLRDGEDSVDDVESGEILPNGDGTYQLWVTLEVPPEDKARYSCR 78 (93)
T ss_pred CCEEEEEecCCC---CCcEEEEEEEEEEeCCCcEEEEEECCEECcccccccceEECCCCeEEEEEEEEECCCCCCEEEEE
Confidence 455443333322 7789999999985 543 79999999633211 1111122221 1223344588999999
Q ss_pred EEeCC
Q psy15127 142 VENLV 146 (633)
Q Consensus 142 ~~n~~ 146 (633)
+.+..
T Consensus 79 V~H~~ 83 (93)
T cd07698 79 VEHSG 83 (93)
T ss_pred EEeCC
Confidence 98654
No 328
>cd05889 Ig1_DNAM-1_like First immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226) and similar proteins. Ig1_DNAM-1_like: domain similar to the first immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226). DNAM-1 is a transmembrane protein having two Ig-like domains. It is an adhesion molecule which plays a part in tumor-directed cytotoxicity and adhesion in natural killer (NK) cells and T lymphocytes. It has been shown to regulate the NK cell killing of several tumor types, including myeloma cells and ovarian carcinoma cells. DNAM-1 interacts specifically with poliovirus receptor (PVR; CD155) and nectin -2 (CD211), other members of the Ig superfamily. DNAM-1 is expressed in most peripheral T cells, NK cells, monocytes and a subset of B lymphocytes.
Probab=97.29 E-value=0.0022 Score=50.14 Aligned_cols=75 Identities=20% Similarity=0.383 Sum_probs=47.8
Q ss_pred ceEEEEEEEeeec-CCeeEEEECCE----EEEeccC--------CccceEEEc----cCceEEEcCCCCCCCeEEEEEEE
Q psy15127 256 RVNRLSCFAEGSP-LPSVFWTQEGS----QVLMFPG--------NAYGHLHVT----QEGTLRIQGVQKEDAGFFVCSAL 318 (633)
Q Consensus 256 ~~~~l~C~~~g~p-~~~v~W~~~g~----~~~~~~~--------~~~~~~~~~----~~~~l~i~~~~~~d~G~Y~C~a~ 318 (633)
+.++|.|...... ..++.|.|... .+..... .-..|+... .+.+|.|.+++.+|+|.|+|.+.
T Consensus 1 ~~vtL~C~~~~~~~~~qV~W~k~~~~~~~~iavy~~~~g~~~~~~y~~Rv~f~~~~~~d~sI~i~nvt~~D~G~Y~C~~~ 80 (96)
T cd05889 1 EKMKLECVYPKTGVLIQVSWTKHNGSHKENIAVYHPIYGMHIEDKYRGRVYFLNSTREDMSLSFNNATEEDVGLYCCSLV 80 (96)
T ss_pred CCEEEEeEcCCCCcEEEEEEEEcCCCCCceEEEEECCCCCEECccccCeEEEecCCCCccEEEEcCCCcccCEEEEEEEE
Confidence 3578999875432 34788988532 2322111 111344433 35689999999999999999985
Q ss_pred e-CCceeEEEEEE
Q psy15127 319 S-VAGSTTVRAFL 330 (633)
Q Consensus 319 n-~~g~~~~~~~l 330 (633)
. +.|..++.+.+
T Consensus 81 t~P~g~~~~~i~~ 93 (96)
T cd05889 81 TYPQGSWEKVIEV 93 (96)
T ss_pred eCCCCCeEEEEEE
Confidence 5 46776666554
No 329
>cd07692 Ig_CD3_epsilon Immunoglobulin (Ig)-like domain of CD3 epsilon chain. Ig_CD3_epsilon; immunoglobulin (Ig)-like domain of CD3 epsilon chain. CD3 is a T cell surface receptor that is associated with alpha/beta T cell receptors (TCRs). The CD3 complex consists of one gamma, one delta, two epsilon, and two zeta chains. The CD3 subunits form heterodimers as gamma/epsilon, delta/epsilon, and zeta/zeta. The gamma, delta, and epsilon chains each contain an extracellular Ig domain, whereas the extracellular domains of the zeta chains are very small and have unknown structure. The CD3 domain participates in intracellular signalling once the TCR has bound an MHC/antigen complex.
Probab=97.28 E-value=0.00052 Score=48.02 Aligned_cols=52 Identities=29% Similarity=0.575 Sum_probs=37.1
Q ss_pred EcCCeEEEEEEEeccCCCeEEEEeCCccCCCCCeEEcccceEEEccCCCCCCeEEEEEEEeC
Q psy15127 84 LSGSVVEFVCRVGGDPLPTILWRRDDGKMPTGRAKILDDRSLQIENVGPQDEGLYICDVENL 145 (633)
Q Consensus 84 ~~G~~~~L~C~~~~~p~p~i~W~~~~~~i~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~n~ 145 (633)
..|.+|+|+|...+. .+.|++++..+... +..+.+.+-. +++|.|+|.+.+.
T Consensus 5 isGTtVtlTCP~~~~---~i~W~~n~~~~~g~------~~~~~~~~~~-e~~G~Y~C~~~~~ 56 (65)
T cd07692 5 ISGTTVTVTCPLSGD---DIKWKKNDQVSQGS------DEKYLSLNHF-SSSGYYHCTADNA 56 (65)
T ss_pred EeccEEEEECCCCCC---CceEEeCCccCCCC------CceEEeeccC-CCCceEEEEeCCC
Confidence 468999999975422 39999999766542 2244455555 8899999998543
No 330
>cd00096 Ig Immunoglobulin domain. Ig: immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of this group are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as, T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as, butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=97.27 E-value=0.001 Score=48.70 Aligned_cols=64 Identities=28% Similarity=0.475 Sum_probs=44.6
Q ss_pred EEEEEEEeeecCCeeEEEECCEEEEeccCC--ccceEEEccCceEEEcCCCCCCCeEEEEEEEeCC
Q psy15127 258 NRLSCFAEGSPLPSVFWTQEGSQVLMFPGN--AYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVA 321 (633)
Q Consensus 258 ~~l~C~~~g~p~~~v~W~~~g~~~~~~~~~--~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~ 321 (633)
+.|.|.+.+.+...+.|++++......... ............|.|.++...|.|.|.|.+.+..
T Consensus 1 ~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~ 66 (74)
T cd00096 1 VTLTCLASGPPPPTITWLKNGKPLPSSVLTRVRSSRGTSSGSSTLTISNVTLEDSGTYTCVASNSA 66 (74)
T ss_pred CEEEEEecCCCCCcEEEEECCEECCCcccEEeccccCcceeEEEEEECccCcccCcEEEEEEecCc
Confidence 468999988777899999988754311100 0011122334479999999999999999998765
No 331
>cd07699 IgC_L Immunoglobulin Constant domain. IgC_L: Immunoglobulin (Ig) light chain constant (C) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.
Probab=97.24 E-value=0.00065 Score=53.93 Aligned_cols=75 Identities=20% Similarity=0.381 Sum_probs=47.7
Q ss_pred CeeeeC-CCceEEEcCCeEEEEEEEecc-C-CCeEEEEeCCccCCCCCe----EEccc------ceEEEccCCCCCCeEE
Q psy15127 72 PFPISE-PSDATVLSGSVVEFVCRVGGD-P-LPTILWRRDDGKMPTGRA----KILDD------RSLQIENVGPQDEGLY 138 (633)
Q Consensus 72 p~~~~~-~~~~~~~~G~~~~L~C~~~~~-p-~p~i~W~~~~~~i~~~~~----~~~~~------~~L~i~~v~~~d~G~Y 138 (633)
|.+..- |.......++.++|.|.+.|. | ...|+|++||..+..+.. ....+ +.|.+..-..++...|
T Consensus 2 P~V~v~~p~~~~~~~~~~~~L~C~~~gfyP~~i~v~W~~~g~~~~~~~~~~~~~~~~dgty~~~s~L~v~~~~w~~~~~~ 81 (100)
T cd07699 2 PSVTIFPPSSEELEKSGKATLVCLINDFYPGFATVQWKVDGATVSSGVQTSTTEQQSDNTYSLSSYLTLTKSDWNKHKVY 81 (100)
T ss_pred CeEEEECCCHHHHccCCCcEEEEEEEeEECCCCEEEEEECCEECcccEeccccEECCCCCEEEEEEEEEcHHHhCCCCeE
Confidence 444333 333345567889999999874 4 447999999998753211 11112 3465655555567899
Q ss_pred EEEEEeCC
Q psy15127 139 ICDVENLV 146 (633)
Q Consensus 139 ~C~~~n~~ 146 (633)
+|.|....
T Consensus 82 sC~V~H~~ 89 (100)
T cd07699 82 TCEVTHEG 89 (100)
T ss_pred EEEEEecC
Confidence 99997654
No 332
>cd05716 Ig_pIgR Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR). Ig_pIgR: Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR). pIgR delivers dimeric IgA and pentameric IgM to mucosal secretions. Polymeric immunoglobulin (pIgs) are the first defense against pathogens and toxins. IgA and IgM can form polymers via an 18-residue extension at their c-termini referred to as the tailpiece. pIgR transports pIgs across mucosal epithelia into mucosal secretions. Human pIgR is a glycosylated type I transmembrane protein, comprised of a 620 residue extracellular region, a 23 residue transmembrane region, and a 103 residue cytoplasmic tail. The extracellular region contains five domains that share sequence similarity with Ig variable (v) regions.
Probab=97.22 E-value=0.0011 Score=52.58 Aligned_cols=71 Identities=18% Similarity=0.289 Sum_probs=47.0
Q ss_pred EecCCceEEEEEEEee-ecCCeeEEEECCE----EEEec----cCCccceEEEcc-----CceEEEcCCCCCCCeEEEEE
Q psy15127 251 IWNHPRVNRLSCFAEG-SPLPSVFWTQEGS----QVLMF----PGNAYGHLHVTQ-----EGTLRIQGVQKEDAGFFVCS 316 (633)
Q Consensus 251 ~~~~g~~~~l~C~~~g-~p~~~v~W~~~g~----~~~~~----~~~~~~~~~~~~-----~~~l~i~~~~~~d~G~Y~C~ 316 (633)
...+|++++|.|.... .....+.|+|... .+... ......+..... ...|.|.+++.+|+|.|.|.
T Consensus 3 ~~~~G~~vtl~C~~~~~~~~~~~~W~r~~~~~~~~~l~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~ 82 (98)
T cd05716 3 TGELGGSVTIPCPYPPKNRSYEKYWCKWGSAGCCLIIVSEGSVQSQYEGRVSLTDDPDNGVFTVTLNQLRKEDAGWYWCG 82 (98)
T ss_pred EEEeCCeEEEEeeCCCCCCCcEeEeECCCCCCCCeEEECCCccccccCCCEEEEecCCCCEEEEEEcCCCHHHCEEEEEE
Confidence 4567899999999865 3456889998542 11100 011123444321 23799999999999999999
Q ss_pred EEeCC
Q psy15127 317 ALSVA 321 (633)
Q Consensus 317 a~n~~ 321 (633)
+....
T Consensus 83 ~~~~~ 87 (98)
T cd05716 83 VGDDG 87 (98)
T ss_pred cccCC
Confidence 87653
No 333
>cd05847 IgC_CH2_IgE CH2 domain (second constant Ig domain of the heavy chain) in immunoglobulin E (IgE). IgC_CH2_IgE: The second constant domain of the heavy chain of immunoglobulin E (IgE). The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma, and mu, all consisting of a variable domain (VH) and three (in alpha, delta, and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). The different classes of antibodies vary in their heavy chains; the IgE class has the epsilon type. This domain (Cepsilon2) of IgE is in place of the flexible hinge region found in IgG.
Probab=97.21 E-value=0.0013 Score=51.41 Aligned_cols=64 Identities=14% Similarity=0.279 Sum_probs=42.6
Q ss_pred cCCeEEEEEEEecc-CC-CeEEEEeCCccCCCCC----e------EEcccceEEEccCCCCCCeEEEEEEEeCCce
Q psy15127 85 SGSVVEFVCRVGGD-PL-PTILWRRDDGKMPTGR----A------KILDDRSLQIENVGPQDEGLYICDVENLVGS 148 (633)
Q Consensus 85 ~G~~~~L~C~~~~~-p~-p~i~W~~~~~~i~~~~----~------~~~~~~~L~i~~v~~~d~G~Y~C~~~n~~g~ 148 (633)
.++.++|.|.+.|. |. ..|+|+++|..+..+. . .+.....|.|..-...+...|+|.|......
T Consensus 13 ~~~~~~L~C~a~gFyP~~I~vtW~~dg~~~~~~~~~s~~~~~~~~Ty~~~S~L~v~~~~w~~~~~ytC~V~H~~~~ 88 (94)
T cd05847 13 TSETIQLLCLISGYTPGTIEVEWLVDGQVATLVAASTAPQKEEGSTFSTTSELNVTQEDWKSGKTYTCKVTHQGTT 88 (94)
T ss_pred CCCCEEEEEEEEeEECCCCEEEEEECCEECcCceeecccEECCCCcEEEEEEEEEchHHhcCCCeEEEEEEECCee
Confidence 45679999999884 43 4799999999863321 1 1111235666555555778999999876544
No 334
>cd05772 IgC_SIRP Signal-regulatory protein (SIRP) immunoglobulin-like domain. IgC_SIRP: Immunoglobulin-like domain of signal-regulatory proteins (SIRP); the signal-regulatory proteins (SIRP) are Ig-like cell surface receptors detected in hematopoietic and non-hematopoietic cells. While their extracellular domains are similar, SIRP are classified as alpha or beta based on the length of the intracytoplasmic domain. Those having a 110- to 113-amino acid tail are classified as SIRP-alpha, and those having a 5-amino acid tail as SIRP-beta. SIRP-alpha and SIRP-beta molecules are thought to have complementary roles in signal regulation: SIRP-alpha inhibit signalling via their immunoreceptor tyrosine (IT)-based inhibition motifs while SIRP-beta are activating. SIRP-beta lack the cytoplasmic domainof SIRP-alpha, and associate with at least one other transmembrane protein (DAP-12 or KARAP). The IT-based activation motifs within DAP-12's cytoplasmic domain may link SIRP-beta to the activating
Probab=97.21 E-value=0.003 Score=51.03 Aligned_cols=64 Identities=20% Similarity=0.431 Sum_probs=41.7
Q ss_pred EEEcCCeEEEEEEEecc-CC-CeEEEEeCCccCCCCCeEEc--c-------cceEEEccCCCCCCe-EEEEEEEeCC
Q psy15127 82 TVLSGSVVEFVCRVGGD-PL-PTILWRRDDGKMPTGRAKIL--D-------DRSLQIENVGPQDEG-LYICDVENLV 146 (633)
Q Consensus 82 ~~~~G~~~~L~C~~~~~-p~-p~i~W~~~~~~i~~~~~~~~--~-------~~~L~i~~v~~~d~G-~Y~C~~~n~~ 146 (633)
....|+.++|.|.+.+. |. ..++|+|||..+........ . .+.|.+.. ...|.| .|+|.+....
T Consensus 17 ~~~~g~~~tL~C~a~gF~P~~i~v~W~kng~~~~~~~~~~~p~~d~~ty~~~S~L~~~~-~~~d~~~~ytC~V~H~~ 92 (111)
T cd05772 17 RANPGQSVNFTCSAHGFSPRDITVKWLKNGNELSAEQPNITPEGDSVSYNVTSTVQVKL-TEDDVHSQVTCEVQHRT 92 (111)
T ss_pred ccCCCCCEEEEEEEeeEeCCCCEEEEEECCEECcccccceeeCCCCCcEEEEEEEEEEC-ccccccCceEEEEEeCC
Confidence 34578889999999874 53 58999999998754311111 1 23455543 344444 5999998754
No 335
>cd07691 Ig_CD3_gamma_delta Immunoglobulin (Ig)-like domain of CD3 gamma and delta chains. Ig_CD3_gamma_delta; immunoglobulin (Ig)-like domain of CD3 gamma and delta chains. CD3 is a T cell surface receptor that is associated with alpha/beta T cell receptors (TCRs). The CD3 complex consists of one gamma, one delta, two epsilon, and two zeta chains. The CD3 subunits form heterodimers as gamma/epsilon, delta/epsilon, and zeta/zeta. The gamma, delta, and epsilon chains each contain an extracellular Ig domain, whereas the extracellular domains of the zeta chains are very small and have unknown structure. The CD3 domain participates in intracellular signalling once the TCR has bound an MHC/antigen complex.
Probab=97.19 E-value=0.0015 Score=46.07 Aligned_cols=60 Identities=17% Similarity=0.298 Sum_probs=42.0
Q ss_pred CCeEEEEEEEeccCCCeEEEEeCCccCCCCCeEEcccceEEEccCCCCCCeEEEEEEEeCCceEEEEEEEEEEe
Q psy15127 86 GSVVEFVCRVGGDPLPTILWRRDDGKMPTGRAKILDDRSLQIENVGPQDEGLYICDVENLVGSISLRASLTVHL 159 (633)
Q Consensus 86 G~~~~L~C~~~~~p~p~i~W~~~~~~i~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~n~~g~~s~~~~l~V~~ 159 (633)
...|.|.|.+. ..|.|++ |..+... ...+|.+..+..+-.|.|.|.+.+ .+....|.|..
T Consensus 6 ~~~V~L~C~~~----tsi~W~k-G~~~~~~-----~~~tlnLGs~~~DPRG~Y~C~~s~----~~~~~~LQVyY 65 (69)
T cd07691 6 EGKVFLKCNGA----TNITWKK-GKEILEV-----SNTLLDLGSRINDPRGTYSCKESE----PNKEKTLQVYY 65 (69)
T ss_pred CceEEEEecCC----CcEEEec-Ccccccc-----cccEEeccCcccCCCcceEecCcc----CCCcEEEEEEE
Confidence 45799999652 4599999 5544321 145888999999999999999866 23344555554
No 336
>KOG0613|consensus
Probab=97.17 E-value=0.0053 Score=68.14 Aligned_cols=82 Identities=12% Similarity=0.020 Sum_probs=55.8
Q ss_pred ecCCceEEEEEEEeeecCCe-eEEEECCEEEEeccCCccceEEEccCceEEEcCCCCCCCeEEEEEEEeCCceeEEEEEE
Q psy15127 252 WNHPRVNRLSCFAEGSPLPS-VFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRAFL 330 (633)
Q Consensus 252 ~~~g~~~~l~C~~~g~p~~~-v~W~~~g~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l 330 (633)
...+..+++.|...+.+.+. +.|++++.......+......+......+.|.++...+.+.|.|.|.|..|........
T Consensus 346 a~d~~~v~m~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ts~~~~~~~~~~~e~~~~~~~a~n~~g~~~~~~~~ 425 (1205)
T KOG0613|consen 346 ARDNTLVEMPTALSGTQKPDEAQGYHGEEVSSESLGALPCPVGTVTSHTYTIKDAGPGEGYFTRVPAVNKGGTEQTIAES 425 (1205)
T ss_pred cccCcceeecccccCCcCCchheeecccccccccccccccccccccCcchhhhhcCcccccccccceeccCCcccccchh
Confidence 34456788888888888875 89998776543322222222222233468899999999999999999999877655544
Q ss_pred EEE
Q psy15127 331 QVR 333 (633)
Q Consensus 331 ~v~ 333 (633)
.+.
T Consensus 426 ~vs 428 (1205)
T KOG0613|consen 426 TVS 428 (1205)
T ss_pred hcc
Confidence 444
No 337
>smart00407 IGc1 Immunoglobulin C-Type.
Probab=97.15 E-value=0.0034 Score=46.82 Aligned_cols=61 Identities=21% Similarity=0.407 Sum_probs=38.9
Q ss_pred EEEEEEEeee-cC-CeeEEEECCEEEEeccCCccceEEEccCc------eEEEcCCCCCCCeEEEEEEEeC
Q psy15127 258 NRLSCFAEGS-PL-PSVFWTQEGSQVLMFPGNAYGHLHVTQEG------TLRIQGVQKEDAGFFVCSALSV 320 (633)
Q Consensus 258 ~~l~C~~~g~-p~-~~v~W~~~g~~~~~~~~~~~~~~~~~~~~------~l~i~~~~~~d~G~Y~C~a~n~ 320 (633)
++|.|.+.|. |+ ..++|++||..+.. +..........++ .|.|.....++...|+|.+...
T Consensus 2 ~~L~C~a~gf~P~~i~v~W~k~g~~~~~--~~~~~~~~~~~~gt~~~~s~L~v~~~~~~~~~~~tC~V~H~ 70 (75)
T smart00407 2 ATLVCLVSGFYPPDITVTWLRNGQEVTS--GVSTTDPLKNSDGTYFLSSYLTVSASTWESGDTYTCQVTHE 70 (75)
T ss_pred eEEEEEEEeEeCCCCEEEEEECCEECCC--CEEECceEECCCCCEEEEEEEEEccccCCCCCEEEEEEEEc
Confidence 6899999986 44 58999999986321 1111111112222 4666655667788999999664
No 338
>cd07700 IgV_CD8_beta Immunoglobulin (Ig) like domain of CD8 beta chain. IgV_CD8_beta: immunoglobulin (Ig)-like domain in CD8 beta. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alpha/alpha or alpha/beta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a V-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain.
Probab=97.13 E-value=0.0016 Score=52.70 Aligned_cols=69 Identities=22% Similarity=0.384 Sum_probs=44.2
Q ss_pred EecCCceEEEEEEEeeec-CCeeEEEECCEE-----EE----eccC--------CccceEEE--cc---CceEEEcCCCC
Q psy15127 251 IWNHPRVNRLSCFAEGSP-LPSVFWTQEGSQ-----VL----MFPG--------NAYGHLHV--TQ---EGTLRIQGVQK 307 (633)
Q Consensus 251 ~~~~g~~~~l~C~~~g~p-~~~v~W~~~g~~-----~~----~~~~--------~~~~~~~~--~~---~~~l~i~~~~~ 307 (633)
.+.+|++++|.|.+.+.. ...+.|++.... +. .... ....+... .. ...|.|.++..
T Consensus 2 ~v~~G~~vtL~C~~~~~~~~~~~~Wyrq~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~I~~~~~ 81 (107)
T cd07700 2 LVQTNNTVKLSCEAKGISENTRIYWLRWRQAPKDSHFEFLALWSPLGGATYGEEVSQEKFSIRVTSDSSRYRLHINRVKP 81 (107)
T ss_pred EEcCCCCEEEEEEEecCCCCCeEEEEEECCCCCCCccEEEEEEcCCCCeEEccccccCcEEEEEECCCCEEEEEECCCCH
Confidence 456789999999987643 457999984321 10 0000 00123332 11 12599999999
Q ss_pred CCCeEEEEEEEe
Q psy15127 308 EDAGFFVCSALS 319 (633)
Q Consensus 308 ~d~G~Y~C~a~n 319 (633)
+|+|.|.|...+
T Consensus 82 ~Dsg~YyCa~~~ 93 (107)
T cd07700 82 EDSGTYFCMTVG 93 (107)
T ss_pred HHCEEEEEeEcC
Confidence 999999999853
No 339
>smart00406 IGv Immunoglobulin V-Type.
Probab=97.13 E-value=0.0011 Score=50.42 Aligned_cols=55 Identities=33% Similarity=0.610 Sum_probs=36.6
Q ss_pred eEEEEEEEeccCCC--eEEEEeCCc--cC------C-----------CCCeEEcc-----cceEEEccCCCCCCeEEEEE
Q psy15127 88 VVEFVCRVGGDPLP--TILWRRDDG--KM------P-----------TGRAKILD-----DRSLQIENVGPQDEGLYICD 141 (633)
Q Consensus 88 ~~~L~C~~~~~p~p--~i~W~~~~~--~i------~-----------~~~~~~~~-----~~~L~i~~v~~~d~G~Y~C~ 141 (633)
++.|.|.+.....+ .+.|++... .. . .++..... +.+|.|.+++.+|+|.|.|.
T Consensus 1 ~v~l~C~~~~~~~~~~~v~W~~~~~~~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~ 80 (81)
T smart00406 1 SVTLSCKASGFTFSSYYVSWVRQPPGKGLEWLGYIGSSGSTYYQQSYKGRVTISKDTSKNDVSLTISNLRVEDTGTYYCA 80 (81)
T ss_pred CEEEEEEEeccccceeEEEEEEeCCCCCeEEEEEEcCCCcEEECcccCCcEEEEecCcCCEEEEEEcCCCHHHCEEEEEc
Confidence 47899998754443 689988542 11 0 12222221 24699999999999999996
Q ss_pred E
Q psy15127 142 V 142 (633)
Q Consensus 142 ~ 142 (633)
+
T Consensus 81 v 81 (81)
T smart00406 81 V 81 (81)
T ss_pred C
Confidence 3
No 340
>KOG4367|consensus
Probab=97.13 E-value=0.00029 Score=67.48 Aligned_cols=73 Identities=16% Similarity=0.143 Sum_probs=59.3
Q ss_pred ccceEEEEEEEecCCCcccccchhhhhcceeEEEEEEcCCCcccceeeeeeccceeEeecCCccceEEeeccccceeEEE
Q psy15127 539 ASTAVRITWEVSWGSVPQHLLDEARARLGTKVVNLRELIPTASTAVRITWEKYNMATVMNAATTTSYTVTHLRKFTKYEF 618 (633)
Q Consensus 539 ~~~si~v~W~~p~~~~p~~~~~~~~~i~~y~~i~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~i~~L~~~t~Y~~ 618 (633)
..++++|.|+-| ...+.+.+|| .++....+.+. + .+| ..+.++..+++||.-++.|..
T Consensus 451 ~nns~t~~wkqp--------~~~~~~~dg~-~leld~g~~g~-------f-----rev-y~g~etmctvdglhfns~y~a 508 (699)
T KOG4367|consen 451 HNNSATLSWKQP--------PLSTVPADGY-ILELDDGNGGQ-------F-----REV-YVGKETMCTVDGLHFNSTYNA 508 (699)
T ss_pred cCCceEEEeecC--------CCCCCCCcce-EEEeecCCCCc-------e-----eEE-EecCceeEEecceecchhHHH
Confidence 478999999954 3567899999 99987765543 2 233 346789999999999999999
Q ss_pred EEeccccccccccCC
Q psy15127 619 FLVPFFKTVEGARLD 633 (633)
Q Consensus 619 ~v~a~n~~g~g~~s~ 633 (633)
||.|+|+.|+++-|+
T Consensus 509 rvka~n~tg~s~ys~ 523 (699)
T KOG4367|consen 509 RVKAFNKTGVSPYSK 523 (699)
T ss_pred HHHHhhccCCCcccc
Confidence 999999999998764
No 341
>cd05720 Ig_CD8_alpha Immunoglobulin (Ig) like domain of CD8 alpha chain. Ig_CD8_alpha: immunoglobulin (Ig)-like domain in CD8 alpha. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alphaalpha or alphabeta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a v-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain. The Ig domain of CD8 alpha binds to antibodies.
Probab=97.10 E-value=0.0019 Score=51.79 Aligned_cols=68 Identities=19% Similarity=0.338 Sum_probs=44.5
Q ss_pred ecCCceEEEEEEEeeecCCeeEEEECCEE-------EEeccC-C---------ccceEEEc---cCceEEEcCCCCCCCe
Q psy15127 252 WNHPRVNRLSCFAEGSPLPSVFWTQEGSQ-------VLMFPG-N---------AYGHLHVT---QEGTLRIQGVQKEDAG 311 (633)
Q Consensus 252 ~~~g~~~~l~C~~~g~p~~~v~W~~~g~~-------~~~~~~-~---------~~~~~~~~---~~~~l~i~~~~~~d~G 311 (633)
+..|++++|.|.........+.|++.... +..... . ...++... ....|.|.++..+|+|
T Consensus 3 v~~G~~vtL~C~~~~~~~~~v~Wyrq~~g~~~~~~~l~~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~L~I~~~~~sDsg 82 (104)
T cd05720 3 AELGQKVELKCEVLNSSPTGCSWLFQPPGSAPQPTFLVYLSGSSKITWDEEELSSKRFSGSRSSNSFVLTLKNFQKENEG 82 (104)
T ss_pred ccCCCeEEEEEEecCCCCCcEEEEEeCCCCCCCCEEEEEEeCCCCeeeccccCCCceEEEEecCCEEEEEECCCCHHHCE
Confidence 45789999999986655567999984321 111110 0 02233322 2236999999999999
Q ss_pred EEEEEEEe
Q psy15127 312 FFVCSALS 319 (633)
Q Consensus 312 ~Y~C~a~n 319 (633)
.|.|.+.+
T Consensus 83 tY~Ca~~~ 90 (104)
T cd05720 83 YYFCSVAS 90 (104)
T ss_pred EEEEEEcc
Confidence 99998764
No 342
>cd05768 IgC_CH4 CH4 domain (fourth constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH4: The fourth immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=97.10 E-value=0.001 Score=52.96 Aligned_cols=71 Identities=13% Similarity=0.243 Sum_probs=44.3
Q ss_pred eCCCceEEEcCCeEEEEEEEecc-CCC-eEEEEeCCccCCCCC-------------eEEcccceEEEccCCCCCCeEEEE
Q psy15127 76 SEPSDATVLSGSVVEFVCRVGGD-PLP-TILWRRDDGKMPTGR-------------AKILDDRSLQIENVGPQDEGLYIC 140 (633)
Q Consensus 76 ~~~~~~~~~~G~~~~L~C~~~~~-p~p-~i~W~~~~~~i~~~~-------------~~~~~~~~L~i~~v~~~d~G~Y~C 140 (633)
..|+...+..|..++|.|.+.|. |.. .++|+++|.++.... ..+.....|.|..-...+...|+|
T Consensus 6 ~~p~~~~~~~~~~~tL~C~a~gFyP~~i~v~W~k~g~~~~~~~~~~~~~~~~~~~dgTy~~~s~L~v~~~~w~~~~~ytC 85 (102)
T cd05768 6 LPPPSEELSLQETATLTCLVKGFSPSDIFVKWLQNGQPLSKQKYVTTAPMQEPGGNESYFLYSKLTVSAEDWNAGDVFTC 85 (102)
T ss_pred eCcChHHhCcCCceEEEEEEeeEeCCCCEEEEEECCEECCcccccccCcccccCCCCeEEEEEEEEEcHHHhcCCCcEEE
Confidence 34444445567899999999985 433 689999998774321 111112345554333456678999
Q ss_pred EEEeCC
Q psy15127 141 DVENLV 146 (633)
Q Consensus 141 ~~~n~~ 146 (633)
.|....
T Consensus 86 ~V~H~~ 91 (102)
T cd05768 86 VVGHEA 91 (102)
T ss_pred EeEeCC
Confidence 997643
No 343
>PHA03271 envelope glycoprotein C; Provisional
Probab=97.05 E-value=0.19 Score=49.04 Aligned_cols=82 Identities=18% Similarity=0.224 Sum_probs=59.8
Q ss_pred ceEEEccCCCCCCeEEEEEEEeCCce--EEEEEEEEEEeeccccccCCCceEEecCCcEEEEEeCCCCCCCC--eEEEEE
Q psy15127 123 RSLQIENVGPQDEGLYICDVENLVGS--ISLRASLTVHLLRDDFRAEPKDTRVASGETALLECGPPKGQPEP--TLHWKK 198 (633)
Q Consensus 123 ~~L~i~~v~~~d~G~Y~C~~~n~~g~--~s~~~~l~V~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~--~i~W~~ 198 (633)
-.|.|.++...|+|.|.-...+.... ..+.+.+.+...+|.+.+.+. .+..|+...-.|.+...+|+- .+.|++
T Consensus 207 m~v~I~svD~~t~Gy~~v~~~d~~N~~i~e~~~~~~v~~RPPsVsV~a~--PVL~Ge~YkAtC~vAnYYPP~SvrlrWf~ 284 (490)
T PHA03271 207 MGVEIRNVDYADNGYIQVIMRDPFNRPLLDKHIYIRVCQRPASVDVLAP--PVLSGENYKASCIVRHFYPPGSVYVSWRQ 284 (490)
T ss_pred eeEEEEEeecccceEEEEEecCCCCCccccceEEEEEEecCCCccccCC--ccccCCCceEEEEeeeecCCCceEEEEEe
Confidence 36999999999999775554444333 355566666666565655543 478999999999987777764 899999
Q ss_pred CCEEeccC
Q psy15127 199 NGQFIDLE 206 (633)
Q Consensus 199 ~~~~~~~~ 206 (633)
||.++...
T Consensus 285 nG~~V~~~ 292 (490)
T PHA03271 285 NGNIATPR 292 (490)
T ss_pred CCccccCc
Confidence 99887643
No 344
>cd07706 IgV_TCR_delta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) delta chain. IgV_TCR_delta: immunoglobulin (Ig) variable (V) domain of the delta chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is
Probab=97.02 E-value=0.0018 Score=53.25 Aligned_cols=34 Identities=24% Similarity=0.383 Sum_probs=25.3
Q ss_pred cCCCceEEecCCcEEEEEeCCCCCCCCeEEEEEC
Q psy15127 166 AEPKDTRVASGETALLECGPPKGQPEPTLHWKKN 199 (633)
Q Consensus 166 ~~~~~~~~~~g~~~~l~C~~~~~~p~~~i~W~~~ 199 (633)
..|....+..|++++|.|..........+.|+|.
T Consensus 4 q~~~~v~~~~G~~v~L~C~~~~~~~~~~v~Wyrq 37 (116)
T cd07706 4 QAQPDVSVQVGEEVTLNCRYETSWTNYYIFWYKQ 37 (116)
T ss_pred EeCCceEEcCCCCEEEEEEEeCCCCceEEEEEEE
Confidence 4566778899999999998433334568999874
No 345
>PHA02633 hypothetical protein; Provisional
Probab=97.01 E-value=0.0022 Score=43.92 Aligned_cols=40 Identities=25% Similarity=0.350 Sum_probs=33.8
Q ss_pred ccceEEEccCCCCCCeEEEEEEEeCCceEEEEEEEEEEee
Q psy15127 121 DDRSLQIENVGPQDEGLYICDVENLVGSISLRASLTVHLL 160 (633)
Q Consensus 121 ~~~~L~i~~v~~~d~G~Y~C~~~n~~g~~s~~~~l~V~~~ 160 (633)
.+..|.|.++..+|+|.|.|..+|..-....++.|.|...
T Consensus 16 ~~~nLwilpa~~sDSGiYiC~~rn~t~c~~~si~l~V~~~ 55 (63)
T PHA02633 16 NCNNMLILNPTQSDSGIYMCITKNETYSDMMKFDLCICLR 55 (63)
T ss_pred ccccEEEeccccccCcEEEEEEcCCCeeEEEEEEEEEeec
Confidence 3457999999999999999999988777777788888764
No 346
>cd05772 IgC_SIRP Signal-regulatory protein (SIRP) immunoglobulin-like domain. IgC_SIRP: Immunoglobulin-like domain of signal-regulatory proteins (SIRP); the signal-regulatory proteins (SIRP) are Ig-like cell surface receptors detected in hematopoietic and non-hematopoietic cells. While their extracellular domains are similar, SIRP are classified as alpha or beta based on the length of the intracytoplasmic domain. Those having a 110- to 113-amino acid tail are classified as SIRP-alpha, and those having a 5-amino acid tail as SIRP-beta. SIRP-alpha and SIRP-beta molecules are thought to have complementary roles in signal regulation: SIRP-alpha inhibit signalling via their immunoreceptor tyrosine (IT)-based inhibition motifs while SIRP-beta are activating. SIRP-beta lack the cytoplasmic domainof SIRP-alpha, and associate with at least one other transmembrane protein (DAP-12 or KARAP). The IT-based activation motifs within DAP-12's cytoplasmic domain may link SIRP-beta to the activating
Probab=97.00 E-value=0.0066 Score=49.01 Aligned_cols=35 Identities=26% Similarity=0.517 Sum_probs=28.1
Q ss_pred ceEEecCCcEEEEEeCCCCCCC-CeEEEEECCEEec
Q psy15127 170 DTRVASGETALLECGPPKGQPE-PTLHWKKNGQFID 204 (633)
Q Consensus 170 ~~~~~~g~~~~l~C~~~~~~p~-~~i~W~~~~~~~~ 204 (633)
......|+.++|.|.+...+|. ..++|+|||..+.
T Consensus 15 ~~~~~~g~~~tL~C~a~gF~P~~i~v~W~kng~~~~ 50 (111)
T cd05772 15 SGRANPGQSVNFTCSAHGFSPRDITVKWLKNGNELS 50 (111)
T ss_pred hhccCCCCCEEEEEEEeeEeCCCCEEEEEECCEECc
Confidence 3345578889999997777785 6999999999875
No 347
>cd07696 IgC_CH3 CH3 domain (third constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH3: The third immunoglobulin constant domain (IgC) of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=96.96 E-value=0.0022 Score=50.28 Aligned_cols=70 Identities=20% Similarity=0.328 Sum_probs=42.8
Q ss_pred CCCceEEEcCCeEEEEEEEecc--CC-CeEEEEeCCccC-CC--------CCeEEcccceEEEccCCCCCCeEEEEEEEe
Q psy15127 77 EPSDATVLSGSVVEFVCRVGGD--PL-PTILWRRDDGKM-PT--------GRAKILDDRSLQIENVGPQDEGLYICDVEN 144 (633)
Q Consensus 77 ~~~~~~~~~G~~~~L~C~~~~~--p~-p~i~W~~~~~~i-~~--------~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~n 144 (633)
.|..-.+..|+.++|.|.+.|. |. ..++|+|++... .. +...+.-.+.|.+..-...+.-.|+|.|..
T Consensus 5 pPs~~~l~~~~~~tLtC~v~gf~yP~~i~v~W~r~~~~~~~~~~~~~~~~~dgty~~~s~l~v~~~~w~~g~~ysC~V~H 84 (96)
T cd07696 5 PPSPKQLLLTKSVKLTCLVTNLTSPEGVNVTWTRGSGEPVKASIQPPESHNNATLSVTSTLNVSTDDWISGDTFQCKVTH 84 (96)
T ss_pred CcCHHHhccCCCeEEEEEEeCCCCCCCcEEEEEECCeEeeeEEecccccCCCCCEEEEEEEEeCHHHccCCCcEEEEEEC
Confidence 3444446678999999999987 33 268999987432 11 011111123455554444456789999976
Q ss_pred CC
Q psy15127 145 LV 146 (633)
Q Consensus 145 ~~ 146 (633)
..
T Consensus 85 ~~ 86 (96)
T cd07696 85 PD 86 (96)
T ss_pred CC
Confidence 53
No 348
>cd05719 Ig2_PVR_like Second immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155) and similar proteins. Ig2_PVR_like: domain similar to the second immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155). Poliovirus (PV) binds to its cellular receptor (PVR/CD155) to initiate infection. CD155 is a membrane-anchored, single-span glycoprotein; its extracellular region has three Ig-like domains. There are four different isotypes of CD155 (referred to as alpha, beta, gamma, and delta), these result from alternate splicing of the CD155 mRNA, and have identical extracellular domains. CD155-beta and - gamma, are secreted, CD155-alpha and delta are membrane-bound and function as PV receptors. The virus recognition site is contained in the amino-terminal domain, D1. Having the virus attachment site on the receptor distal from the plasma membrane may be important for successful initiation of infection of cells by the virus. CD155 binds in the poliovirus
Probab=96.96 E-value=0.0041 Score=48.61 Aligned_cols=63 Identities=16% Similarity=0.215 Sum_probs=41.9
Q ss_pred CCeEEEEEEE-eccCCCeEEEEeCCccCCCC------CeEEcccceEEEccCCCCCCeEEEEEEEeCCce
Q psy15127 86 GSVVEFVCRV-GGDPLPTILWRRDDGKMPTG------RAKILDDRSLQIENVGPQDEGLYICDVENLVGS 148 (633)
Q Consensus 86 G~~~~L~C~~-~~~p~p~i~W~~~~~~i~~~------~~~~~~~~~L~i~~v~~~d~G~Y~C~~~n~~g~ 148 (633)
.....+.|.+ .|.|.+.|+|+++....... .....-.+.|.+.....+|...|+|++.+....
T Consensus 15 ~~~~va~C~s~~gkP~a~ItW~~~~~~~~~~~~~~~~~g~~tv~S~l~~~p~~~d~G~~~tC~v~h~~l~ 84 (95)
T cd05719 15 EPVTVATCVSANGKPPATISWETTLGGEAETQSKENPNGTVTVTSEYRLVPSREANGKELTCVVSHPTLQ 84 (95)
T ss_pred CccEEEEEECCCCcCCCEEEEEeCCCCcceeEeecCCCCCEEEEEEEEEecCHHHCCCEEEEEEeCcccC
Confidence 4567889998 57899999999972211110 111111246777777777888999999887543
No 349
>cd05770 IgC_beta2m Class I major histocompatibility complex (MHC) beta2-microglobulin. IgC_beta2m: Immunoglobulin-like domain in beta2-Microglobulin (beta2m). Beta2m is the non-covalently bound light chain of the human class I major histocompatibility complex (MHC-I). Beta2m is structured as a beta-sandwich domain composed of two facing beta-sheets (four stranded and three stranded), that is typical of the C-type immunoglobulin superfamily. This structure is stabilized by an intramolecular disulfide bridge connecting two Cys residues in the facing beta -sheets. In vivo, MHC-I continuously exposes beta2m on the cell surface, where it may be released to plasmatic fluids, transported to the kidneys, degraded and then excreted.
Probab=96.95 E-value=0.0062 Score=47.30 Aligned_cols=61 Identities=21% Similarity=0.309 Sum_probs=40.2
Q ss_pred EcCCeEEEEEEEecc-C-CCeEEEEeCCccCCCCCe----EEcccceEEE---ccCCCCCCeEEEEEEEeC
Q psy15127 84 LSGSVVEFVCRVGGD-P-LPTILWRRDDGKMPTGRA----KILDDRSLQI---ENVGPQDEGLYICDVENL 145 (633)
Q Consensus 84 ~~G~~~~L~C~~~~~-p-~p~i~W~~~~~~i~~~~~----~~~~~~~L~i---~~v~~~d~G~Y~C~~~n~ 145 (633)
..|+..+|.|.+.|. | ...++|+|||+.+. +.. ....+++..+ ..+...+...|+|.+...
T Consensus 13 ~~g~~~~L~C~a~gFyP~~i~v~W~~dg~~~~-~~~~~~~~p~~d~tyq~~s~l~~~~~~~~~ysC~V~H~ 82 (93)
T cd05770 13 ENGKPNVLNCYVTGFHPPDIEIRLLKNGVKIP-KVEQSDLSFSKDWTFYLLKSTEFTPTKGDEYACRVRHN 82 (93)
T ss_pred cCCCceEEEEEEEEEeCCCCEEEEEECCEECC-CcEECcEEECCCCCEEEEEEEEECCCCCCeEEEEEEEC
Confidence 457778999999884 4 34689999999876 321 1122333222 123567888999999764
No 350
>cd07698 IgC_MHC_I_alpha3 Class I major histocompatibility complex (MHC) alpha chain immunoglobulin domain. IgC_MHC_I_alpha3; Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class I alpha chain. Class I MHC proteins bind antigenic peptide fragments and present them to CD8+ T lymphocytes. Class I molecules consist of a transmembrane alpha chain and a small chain called the beta2 microglobulin. The alpha chain contains three extracellular domains, two of which fold together to form the peptide-binding cleft (alpha1 and alpha2), and one which has an Ig fold (alpha3). Peptide binding to class I molecules occurs in the endoplasmic reticulum (ER) and involves both chaperones and dedicated factors to assist in peptide loading. Class I MHC molecules are expressed on most nucleated cells.
Probab=96.94 E-value=0.0054 Score=48.03 Aligned_cols=65 Identities=23% Similarity=0.363 Sum_probs=38.9
Q ss_pred CceEEEEEEEeeecCC--eeEEEECCEEEEeccCCccceEEEccCceEEE---cCCCCCCCeEEEEEEEeCC
Q psy15127 255 PRVNRLSCFAEGSPLP--SVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRI---QGVQKEDAGFFVCSALSVA 321 (633)
Q Consensus 255 g~~~~l~C~~~g~p~~--~v~W~~~g~~~~~~~~~~~~~~~~~~~~~l~i---~~~~~~d~G~Y~C~a~n~~ 321 (633)
++.++|.|.+.|..++ .++|.++|..+.. ...........++++.+ ..+...+.+.|+|.+....
T Consensus 14 ~~~~~L~C~a~gF~P~~i~v~W~~~g~~~~~--~~~~~~~~~~~d~ty~~~s~l~v~~~~~~~ytC~V~H~~ 83 (93)
T cd07698 14 DGSLTLSCHATGFYPRDIEVTWLRDGEDSVD--DVESGEILPNGDGTYQLWVTLEVPPEDKARYSCRVEHSG 83 (93)
T ss_pred CCcEEEEEEEEEEeCCCcEEEEEECCEECcc--cccccceEECCCCeEEEEEEEEECCCCCCEEEEEEEeCC
Confidence 5789999999996443 8999999963221 11111222233333221 2233347899999997653
No 351
>KOG4152|consensus
Probab=96.93 E-value=0.0015 Score=64.49 Aligned_cols=133 Identities=16% Similarity=0.179 Sum_probs=75.9
Q ss_pred EecCCCCCeEEEEEEEEeccccCCCCCCCCceeecCCCCCCCcchHHHHHHHhCCceEEeeeeeecccceEEEEEEEecC
Q psy15127 473 VSDLKPDTSYMFIVRAENSHGLGIPSPVSPITRTLGLNSLVPQHLLDEARARLGTKVVNLRELIPTASTAVRITWEVSWG 552 (633)
Q Consensus 473 i~~L~p~~~Y~~~v~a~n~~G~g~~s~~~~~~~t~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~si~v~W~~p~~ 552 (633)
=.+|.+++.|.|+|.|.|..|.|+++.....-+....-|..|... . ..-+-..|.+.|++|
T Consensus 651 k~~lv~Gq~yrfrV~aIng~G~gp~s~i~~~kTc~pG~P~apS~~----------------r-i~k~~eGi~l~wepp-- 711 (830)
T KOG4152|consen 651 KTSLVTGQAYRFRVTAINGKGPGPASTILKLKTCAPGKPTAPSGA----------------R-IKKTIEGISLVWEPP-- 711 (830)
T ss_pred ccccccccceeeeeeeeeccCCCchhhheeeeeccCCCCCCcccc----------------c-ccccccceeecccCC--
Confidence 357999999999999999999999998774333344444444322 1 111345788999955
Q ss_pred CCcccccchhhhhcceeEEEEEEcCCCcccce-eeeeec----cceeEeecCCccceEEeeccccceeEEEEEecccccc
Q psy15127 553 SVPQHLLDEARARLGTKVVNLRELIPTASTAV-RITWEK----YNMATVMNAATTTSYTVTHLRKFTKYEFFLVPFFKTV 627 (633)
Q Consensus 553 ~~p~~~~~~~~~i~~y~~i~~~~~~~~~~~~~-~~~w~~----~~~~~~~~~~~~~~~~i~~L~~~t~Y~~~v~a~n~~g 627 (633)
. ..+.|.|..| ..+.....+...+.+ ..-..+ .....++ .+.+...-+-+...+..-.|+|.|.|+.|
T Consensus 712 ----t-~p~sg~Iiey-s~ylAi~tq~~~~~~sql~fmr~ycg~~t~c~v-t~g~l~tA~~d~t~~paivfri~aknekG 784 (830)
T KOG4152|consen 712 ----T-KPGSGTIIEY-SPYLAIITQAGATGVSQLPFMRSYCGIITTCVV-TSGKLITAVPDITTGPAIVFRIVAKNEKG 784 (830)
T ss_pred ----C-CCCCcceEEe-ehhhHhhhhhhccCccccceeeeecccceeeEE-ecccceeeccccccCcceEEEEEecCCCC
Confidence 1 2336777777 444433322211111 000111 1111111 11222222334555778899999999999
Q ss_pred cccc
Q psy15127 628 EGAR 631 (633)
Q Consensus 628 ~g~~ 631 (633)
+|+.
T Consensus 785 yGpa 788 (830)
T KOG4152|consen 785 YGPA 788 (830)
T ss_pred CCcc
Confidence 9985
No 352
>cd04981 IgV_H Immunoglobulin (Ig) heavy chain (H), variable (V) domain. IgV_H: Immunoglobulin (Ig) heavy chain (H), variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which can associate with any of the heavy chains. This family includes alpha, gamma, delta, epsilon, and mu heavy chains.
Probab=96.90 E-value=0.0041 Score=51.06 Aligned_cols=71 Identities=18% Similarity=0.300 Sum_probs=46.0
Q ss_pred eEEecCCceEEEEEEEeeec--CCeeEEEECC--E-E--EE-ec--------cCCccceEEEcc---C--ceEEEcCCCC
Q psy15127 249 LLIWNHPRVNRLSCFAEGSP--LPSVFWTQEG--S-Q--VL-MF--------PGNAYGHLHVTQ---E--GTLRIQGVQK 307 (633)
Q Consensus 249 ~~~~~~g~~~~l~C~~~g~p--~~~v~W~~~g--~-~--~~-~~--------~~~~~~~~~~~~---~--~~l~i~~~~~ 307 (633)
...+.+|++++|.|...+.- ...+.|+|.. + + +. .. ......++.... . ..|.|.++..
T Consensus 6 ~~~v~~G~~vtL~C~~~~~~~~~~~~~WYkQ~~g~~p~~l~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~I~~~~~ 85 (117)
T cd04981 6 PGLVKPGQSLKLSCKASGFTFTSYGVNWVRQAPGKGLEWIGFINPGGGETYYADSVKGRFTITRDTSKSTVYLQLNSLTP 85 (117)
T ss_pred CeEEcCCCCEEEEEEEeCCCcccceEEEEEECCCCCcEEEEEEecCCCceEeCcccCCcEEEEEEccCCEEEEEECCCCH
Confidence 45677899999999876543 4569999832 2 1 11 10 001123444431 1 2699999999
Q ss_pred CCCeEEEEEEEe
Q psy15127 308 EDAGFFVCSALS 319 (633)
Q Consensus 308 ~d~G~Y~C~a~n 319 (633)
+|+|.|.|.+..
T Consensus 86 ~Dsa~YyCa~~~ 97 (117)
T cd04981 86 EDTAVYYCARGL 97 (117)
T ss_pred HHCEEEEEEEEc
Confidence 999999998864
No 353
>cd05767 IgC_MHC_II_alpha Class II major histocompatibility complex (MHC) alpha chain immunoglobulin domain. IgC_MHC_II_alpha: Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class II alpha chain. MHC class II molecules play a key role in the initiation of the antigen-specific immune reponse. In both humans and in mice these molecules have been shown to be expressed constitutively on the cell surface of professional antigen-presenting cells (APCs), for example on B-lymphocytes, monocytes, and macrophages. The expression of these molecules has been shown to be induced in nonprofessional APCs such as keratinocyctes, and they are expressed on the surface of activated human T cells and on T cells from other species. The MHC II molecules present antigenic peptides to CD4(+) T-lymphocytes. These peptides derive mostly from protelytic processing via the endocytic pathway, of antigens internalized by the APC. These peptides bind to the MHC class II molecules in the endosom
Probab=96.82 E-value=0.0075 Score=47.01 Aligned_cols=59 Identities=22% Similarity=0.419 Sum_probs=39.3
Q ss_pred EcCCeEEEEEEEecc-CC-CeEEEEeCCccCCCCCe----EEccc------ceEEEccCCCCCCeEEEEEEEeC
Q psy15127 84 LSGSVVEFVCRVGGD-PL-PTILWRRDDGKMPTGRA----KILDD------RSLQIENVGPQDEGLYICDVENL 145 (633)
Q Consensus 84 ~~G~~~~L~C~~~~~-p~-p~i~W~~~~~~i~~~~~----~~~~~------~~L~i~~v~~~d~G~Y~C~~~n~ 145 (633)
..|+..+|.|.+.|. |. ..++|++||..+..+.. ....| ..|.+. .++...|+|.|...
T Consensus 13 ~~~~~~tL~C~a~gFyP~~I~v~W~~~g~~~~~~~~~~~~~~~~Dgty~~~s~L~v~---~~~~~~ytC~V~H~ 83 (94)
T cd05767 13 ELGEPNTLICFVDNFFPPVLNVTWLKNGVPVTDGVSETRYYPRQDLSFQKFSYLNFT---PEEGDIYSCIVEHW 83 (94)
T ss_pred cCCCCeEEEEEEEEEECCcCEEEEEECCeEccCceEEeeeEeCCCCcEEEEEEEEEE---CCCCCeEEEEEEeC
Confidence 346668999999984 43 46899999998754321 11122 245554 35667999999764
No 354
>cd05769 IgC_TCR_beta T cell receptor (TCR) beta chain constant immunoglobulin domain. IgC_TCR_beta: Constant domain of the beta chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group includes the variable domain of the beta chain. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The antigen binding site is formed by the variable domains of the alpha and beta chains, located at the N-terminus of each chain. Alpha/beta TCRs recognize antigens differently from gamma/delta TCRs.
Probab=96.82 E-value=0.0044 Score=50.24 Aligned_cols=71 Identities=20% Similarity=0.339 Sum_probs=45.8
Q ss_pred CCCceEEEcCCeEEEEEEEecc-CC-CeEEEEeCCccCCCCCe-----------EEcccceEEEccCCCCC-CeEEEEEE
Q psy15127 77 EPSDATVLSGSVVEFVCRVGGD-PL-PTILWRRDDGKMPTGRA-----------KILDDRSLQIENVGPQD-EGLYICDV 142 (633)
Q Consensus 77 ~~~~~~~~~G~~~~L~C~~~~~-p~-p~i~W~~~~~~i~~~~~-----------~~~~~~~L~i~~v~~~d-~G~Y~C~~ 142 (633)
.|....+.+++.++|.|.+.+. |. ..|+|+|||..+..+.. .+...+.|.|......| ...|+|.|
T Consensus 9 ~ps~~e~~~~~~~tL~Cla~gFyP~~I~V~W~kng~~l~~g~~~~~~~~~~~~gTYs~~S~L~v~~~~w~~~~~~ytC~V 88 (115)
T cd05769 9 PPSEAEIRNKRKATLVCLATGFYPDHVSLSWKVNGKEVTDGVATDPQALRENTSTYSISSRLRVSATEWFNPRNTFTCIV 88 (115)
T ss_pred CcChHHhccCCCcEEEEEEEeEeCCCcEEEEEECCEECCCCcccccceecCCCCeEEEEEEEEEChHHhccCCCeEEEEE
Confidence 3444445567789999999874 44 37999999988754321 11112356665544434 67999999
Q ss_pred EeCCc
Q psy15127 143 ENLVG 147 (633)
Q Consensus 143 ~n~~g 147 (633)
.....
T Consensus 89 ~H~g~ 93 (115)
T cd05769 89 QFYGG 93 (115)
T ss_pred EEeCC
Confidence 86543
No 355
>cd05766 IgC_MHC_II_beta Class II major histocompatibility complex (MHC) beta chain immunoglobulin domain. IgC_MHC_II_beta: Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class II beta chain. MHC class II molecules play a key role in the initiation of the antigen-specific immune reponse. In both humans and in mice these molecules have been shown to be expressed constitutively on the cell surface of professional antigen-presenting cells (APCs), for example on B-lymphocytes, monocytes, and macrophages. The expression of these molecules has been shown to be induced in nonprofessional APCs such as keratinocyctes, and they are expressed on the surface of activated human T cells and on T cells from other species. The MHC II molecules present antigenic peptides to CD4(+) T-lymphocytes. These peptides derive mostly from protelytic processing via the endocytic pathway, of antigens internalized by the APC. These peptides bind to the MHC class II molecules in the endosome be
Probab=96.75 E-value=0.0091 Score=46.66 Aligned_cols=60 Identities=25% Similarity=0.326 Sum_probs=40.1
Q ss_pred EcCCeEEEEEEEecc-CCC-eEEEEeCCccCCCCC----eEEccc------ceEEEccCCCCCCeEEEEEEEeCC
Q psy15127 84 LSGSVVEFVCRVGGD-PLP-TILWRRDDGKMPTGR----AKILDD------RSLQIENVGPQDEGLYICDVENLV 146 (633)
Q Consensus 84 ~~G~~~~L~C~~~~~-p~p-~i~W~~~~~~i~~~~----~~~~~~------~~L~i~~v~~~d~G~Y~C~~~n~~ 146 (633)
..|+.++|.|.+.|. |.. .++|++||+.+..+. .....+ ..|.+ ..++...|+|.+....
T Consensus 12 ~~~~~~~L~C~~~gFyP~~i~v~W~~~g~~~~~~~~~~~~~~~~dgTy~~~s~L~~---~~~~~~~ysC~V~H~~ 83 (94)
T cd05766 12 SLSHPHLLVCHVWGFYPPEITVKWFKNGQEETEGVVSTELIPNGDWTYQILVMLET---TPSRGDTYTCVVEHSS 83 (94)
T ss_pred cCCCCeEEEEEEeeecCCCCEEEEEECCeecCCCceecceEECCCCcEEEEEEEEE---cCCCCCEEEEEEEeCC
Confidence 468899999999884 443 789999999875431 111112 23433 3456779999998653
No 356
>cd05770 IgC_beta2m Class I major histocompatibility complex (MHC) beta2-microglobulin. IgC_beta2m: Immunoglobulin-like domain in beta2-Microglobulin (beta2m). Beta2m is the non-covalently bound light chain of the human class I major histocompatibility complex (MHC-I). Beta2m is structured as a beta-sandwich domain composed of two facing beta-sheets (four stranded and three stranded), that is typical of the C-type immunoglobulin superfamily. This structure is stabilized by an intramolecular disulfide bridge connecting two Cys residues in the facing beta -sheets. In vivo, MHC-I continuously exposes beta2m on the cell surface, where it may be released to plasmatic fluids, transported to the kidneys, degraded and then excreted.
Probab=96.73 E-value=0.0084 Score=46.55 Aligned_cols=63 Identities=13% Similarity=0.223 Sum_probs=40.5
Q ss_pred CceEEEEEEEeeecC--CeeEEEECCEEEEeccCCccceEEEccCceEEEc---CCCCCCCeEEEEEEEeC
Q psy15127 255 PRVNRLSCFAEGSPL--PSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQ---GVQKEDAGFFVCSALSV 320 (633)
Q Consensus 255 g~~~~l~C~~~g~p~--~~v~W~~~g~~~~~~~~~~~~~~~~~~~~~l~i~---~~~~~d~G~Y~C~a~n~ 320 (633)
|...+|.|.+.|.-+ ..++|.+||..+. +..........++++.+. .+.+.+...|+|++.-.
T Consensus 15 g~~~~L~C~a~gFyP~~i~v~W~~dg~~~~---~~~~~~~~p~~d~tyq~~s~l~~~~~~~~~ysC~V~H~ 82 (93)
T cd05770 15 GKPNVLNCYVTGFHPPDIEIRLLKNGVKIP---KVEQSDLSFSKDWTFYLLKSTEFTPTKGDEYACRVRHN 82 (93)
T ss_pred CCceEEEEEEEEEeCCCCEEEEEECCEECC---CcEECcEEECCCCCEEEEEEEEECCCCCCeEEEEEEEC
Confidence 456789999999644 3789999999864 112222333444443332 23456778899999664
No 357
>cd05721 IgV_CTLA-4 Immunoglobulin (Ig) domain of cytotoxic T lymphocyte-associated antigen 4 (CTLA-4). IgV_CTLA-4: domain similar to the variable(v)-type immunoglobulin (Ig) domain found in cytotoxic T lymphocyte-associated antigen 4 (CTLA-4). CTLA-4 is involved in the regulation of T cell response, acting as an inhibitor of intracellular signalling. CTLA-4 is similar to CD28, a T cell co-receptor protein that recognizes the B7 proteins (CD80 and CD86). CD28 binding of the B7 proteins occurs after the presentation of antigen to the T cell receptor (TCR) via the peptide-MHC complex on the surface of an antigen presenting cell (APC). CTLA-4 also binds the B7 molecules with a higher affinity than does CD28. The B7/CTLA-4 interaction generates inhibitory signals down-regulating the response, and may prevent T cell activation by weak TCR signals. CD28 and CTLA-4 then elicit opposing signals in the regulation of T cell responsiveness and homeostasis. T cell activation leads to increased
Probab=96.73 E-value=0.0085 Score=47.81 Aligned_cols=68 Identities=10% Similarity=0.233 Sum_probs=46.5
Q ss_pred eeCCCceEEEcCCeEEEEEEEeccCCC---eEEEEeCCc-cCC---------------CCCeEEcc-----cceEEEccC
Q psy15127 75 ISEPSDATVLSGSVVEFVCRVGGDPLP---TILWRRDDG-KMP---------------TGRAKILD-----DRSLQIENV 130 (633)
Q Consensus 75 ~~~~~~~~~~~G~~~~L~C~~~~~p~p---~i~W~~~~~-~i~---------------~~~~~~~~-----~~~L~i~~v 130 (633)
..++....+..|..++|.|.+++.-.. .++|+|+-. .+. .+++.... .-.|.|.++
T Consensus 2 l~~~~~~lv~p~~sv~LsC~~sg~~~s~e~~~~wvRq~pg~lE~c~~~~~~g~~~~~~~~r~tcs~~~s~ntv~L~l~~L 81 (115)
T cd05721 2 LVQQSPVLASSNGAASLVCEYTYNGFSKEFRASLLKGADSAVEVCAVTGNMSNQLQTSLDGFNCDGTLGNEQVNFTLQNL 81 (115)
T ss_pred eeecCCeEEcCCCCEEEEEEecCCccccEEEEEEEEeCCCCcEEEEEEeCCCccccccCCCeEEeEeCCCCEEEEEEcCC
Confidence 345666778999999999999765433 589998422 210 11222111 136999999
Q ss_pred CCCCCeEEEEEE
Q psy15127 131 GPQDEGLYICDV 142 (633)
Q Consensus 131 ~~~d~G~Y~C~~ 142 (633)
+.+|++.|.|..
T Consensus 82 ~a~DTa~Y~Ca~ 93 (115)
T cd05721 82 RANQTDIYFCKI 93 (115)
T ss_pred CHHHCeEEEEEe
Confidence 999999999975
No 358
>PF08205 C2-set_2: CD80-like C2-set immunoglobulin domain ; InterPro: IPR013162 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the C2-set type domains found in the T-cell antigen CD80, as well as in related proteins. CD80 (B7-1) is a glycoprotein expressed on antigen-presenting cells []. The shared ligands on CD80 and CD86 (B7-2) deliver the co-stimulatory signal through CD28 and CTLA-4 on T-cells, where CD28 augments the T-cell response and CTLA-4 attenuates it [].; PDB: 3S58_A 3O3U_N 3CJJ_A 3S59_A 2PF6_B 2PET_A 3ALP_A 3SKU_D 3U83_A 3U82_B ....
Probab=96.70 E-value=0.0043 Score=48.16 Aligned_cols=66 Identities=21% Similarity=0.342 Sum_probs=42.7
Q ss_pred CceEEEEEEE-eeecCCeeEEEECCEEEEeccCCccceEEEcc------CceEEEcCCCCCCCeEEEEEEEeCCce
Q psy15127 255 PRVNRLSCFA-EGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQ------EGTLRIQGVQKEDAGFFVCSALSVAGS 323 (633)
Q Consensus 255 g~~~~l~C~~-~g~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~------~~~l~i~~~~~~d~G~Y~C~a~n~~g~ 323 (633)
++.+.|.|.+ .|+|++.|+|+.++..+.... ........ .+.|.+..-..++...++|.|.+..-.
T Consensus 14 ~~~~~~~C~s~~~~P~~~i~W~~~~~~~~~~~---~~~~~~~~~~~~~~~S~l~~~~~~~~~~~~~~C~~~~~~~~ 86 (89)
T PF08205_consen 14 GEEVTLTCSSSGGYPPPQITWYLDGGPVVASN---TTQSSSPDNGLFTVSSTLTLTPTREDHGKTLTCRASHPALS 86 (89)
T ss_dssp TEEEEEEEEEEEEBS-EEEEEEETTCEECEEE---EEEEEETTTTTEEEEEEEEEETTGGGTTEEEEEEEEETTCC
T ss_pred ceEEEEEEEeCCeECCeEEEEEECCCceeeee---eeeeeccCCCcceEEEEEEEEcChHHCCeEEEEEEECCccC
Confidence 6899999977 567889999999998761000 00111111 125667655556778999999987543
No 359
>KOG1480|consensus
Probab=96.67 E-value=0.0008 Score=69.80 Aligned_cols=165 Identities=24% Similarity=0.374 Sum_probs=100.7
Q ss_pred CCeeeeCCCceEEEcCCeEEEEEEEeccCCCeEEEEeCCccCCCCCeEEc-----------ccceEEEccCCCCCCe---
Q psy15127 71 KPFPISEPSDATVLSGSVVEFVCRVGGDPLPTILWRRDDGKMPTGRAKIL-----------DDRSLQIENVGPQDEG--- 136 (633)
Q Consensus 71 ~p~~~~~~~~~~~~~G~~~~L~C~~~~~p~p~i~W~~~~~~i~~~~~~~~-----------~~~~L~i~~v~~~d~G--- 136 (633)
-|.|+..|.+..+..|..+.|.|.+. |.++|...-++.-+.+.+.... ..-.+.|..-..++.|
T Consensus 24 l~~~~~~p~~~yii~~~p~~l~c~a~--~a~~i~~kc~~~wv~~~~~~~~~~~d~tsg~~~~~~si~Isr~~v~~~~~~~ 101 (909)
T KOG1480|consen 24 LPHFTTEPKSAYIIKNKPLRLQCKAN--PATQIRFKCNSEWVHQSRHEKLEGTDETSGLGVREVSIDISRQQVETSGGPE 101 (909)
T ss_pred cceeeecCCccceecCCCccceecCC--cccccccccChhhhcCccceeeeccCcccceeEEeeeeeeehhhhhcccCcc
Confidence 36788999999999999999999874 4444433333333322221111 1112333333333322
Q ss_pred EEEE--EEEeCCceE-EEEEEEEEEeeccccccCCCceEEecCCcEEEEEeCCCCCCCCeEEEEECCEEeccCCCeeEEe
Q psy15127 137 LYIC--DVENLVGSI-SLRASLTVHLLRDDFRAEPKDTRVASGETALLECGPPKGQPEPTLHWKKNGQFIDLESSKSLDL 213 (633)
Q Consensus 137 ~Y~C--~~~n~~g~~-s~~~~l~V~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~i~W~~~~~~~~~~~~~~~~~ 213 (633)
.|.| .+....|.. +..+.+.+.+....+...|..+.|..+....+.|....+.|...+.|++++..++.+.... ..
T Consensus 102 d~~cQc~a~~~~g~~~s~~a~vr~ay~rk~f~~~p~~q~V~~~s~~~l~cr~pe~~paae~~w~k~e~~~~pd~n~~-~~ 180 (909)
T KOG1480|consen 102 DYWCQCVAWSDDGTVKSRKATVRIAYLRKHFEQSPVGQEVQEETTLQLPCRPPEGDPKAEVEWLKNEVVIDPDANVI-RA 180 (909)
T ss_pred ceeeeeeeecCCCcchhhhHHHHHHHHHHhhccChhhheecccccccccccCcccchhhhhhccccCCCCCccccch-hh
Confidence 4555 455555531 2222333333334566778888999999999999988999999999999998887733322 22
Q ss_pred ccceeee----EEEeeeEEEEeecCCCCC
Q psy15127 214 SRRTLGW----LRVRPLYWNVARPRANLN 238 (633)
Q Consensus 214 ~~~~~~~----~~~~g~y~C~a~~~~~~~ 238 (633)
....+.+ ....++|+|.|.|-++..
T Consensus 181 ~d~~li~~~arlsd~~nytc~a~ni~~~r 209 (909)
T KOG1480|consen 181 SDHNLIISQARLSDSGNYTCEATNIVAKR 209 (909)
T ss_pred hcCCccccchhhhhcccceeeeehhhccc
Confidence 2222222 233589999999987755
No 360
>cd07703 Ig2_Nectin-2_like Second immunoglobulin (Ig) domain of nectin-2 (also known as poliovirus receptor related protein 2 or CD112) and similar proteins. Ig2_Nectin-2_like: domain similar to the second immunoglobulin (Ig) domain of nectin-2 (also known as poliovirus receptor related protein 2 or CD112). Nectin-2 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectin-2 and nectin-3 localize at Sertoli-spermatid junctions where they form heterophilic trans-interactions between the cells that are essential for the formation and maintenance of the junctions and for spermatid development.
Probab=96.66 E-value=0.007 Score=47.18 Aligned_cols=63 Identities=16% Similarity=0.181 Sum_probs=42.2
Q ss_pred CCeEEEEEEEe-ccCCCeEEEEeCCccCCCCCe------EEcccceEEEccCCCCCCeEEEEEEEeCCce
Q psy15127 86 GSVVEFVCRVG-GDPLPTILWRRDDGKMPTGRA------KILDDRSLQIENVGPQDEGLYICDVENLVGS 148 (633)
Q Consensus 86 G~~~~L~C~~~-~~p~p~i~W~~~~~~i~~~~~------~~~~~~~L~i~~v~~~d~G~Y~C~~~n~~g~ 148 (633)
...+.+.|.+. |.|.+.|+|+++......... ...-.+.|.+.....+|...|+|++.+....
T Consensus 15 ~~~~va~C~s~~gkPaa~IsW~~~~~g~~~~~~~~~~~gt~tv~S~l~~~P~~~d~Gk~ltC~v~h~al~ 84 (95)
T cd07703 15 IPVPVAKCVSANGRPPARISWSSTLGGNANTTSKENGDGTVTVTSEYSLVPTPEANGKEVTCKVEHETLQ 84 (95)
T ss_pred CccEEEEEEcCCCCCCcEEEEEcCCCCCeeEEEEeCCCCCEEEEEEEEEecCHHHCCCEEEEEEeCcccC
Confidence 35788999875 789999999998322211111 1111246777677778888999999987544
No 361
>smart00406 IGv Immunoglobulin V-Type.
Probab=96.66 E-value=0.0064 Score=46.08 Aligned_cols=61 Identities=25% Similarity=0.480 Sum_probs=38.3
Q ss_pred eEEEEEEEeeecCC--eeEEEECCE-----EEEecc--C------CccceEEEccC-----ceEEEcCCCCCCCeEEEEE
Q psy15127 257 VNRLSCFAEGSPLP--SVFWTQEGS-----QVLMFP--G------NAYGHLHVTQE-----GTLRIQGVQKEDAGFFVCS 316 (633)
Q Consensus 257 ~~~l~C~~~g~p~~--~v~W~~~g~-----~~~~~~--~------~~~~~~~~~~~-----~~l~i~~~~~~d~G~Y~C~ 316 (633)
+++|.|.+.....+ .+.|++... .+.... . ....++..... .+|.|.+++.+|+|.|.|.
T Consensus 1 ~v~l~C~~~~~~~~~~~v~W~~~~~~~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~ 80 (81)
T smart00406 1 SVTLSCKASGFTFSSYYVSWVRQPPGKGLEWLGYIGSSGSTYYQQSYKGRVTISKDTSKNDVSLTISNLRVEDTGTYYCA 80 (81)
T ss_pred CEEEEEEEeccccceeEEEEEEeCCCCCeEEEEEEcCCCcEEECcccCCcEEEEecCcCCEEEEEEcCCCHHHCEEEEEc
Confidence 36799988765553 789988541 111110 0 11234443322 3699999999999999996
Q ss_pred E
Q psy15127 317 A 317 (633)
Q Consensus 317 a 317 (633)
+
T Consensus 81 v 81 (81)
T smart00406 81 V 81 (81)
T ss_pred C
Confidence 3
No 362
>cd05847 IgC_CH2_IgE CH2 domain (second constant Ig domain of the heavy chain) in immunoglobulin E (IgE). IgC_CH2_IgE: The second constant domain of the heavy chain of immunoglobulin E (IgE). The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma, and mu, all consisting of a variable domain (VH) and three (in alpha, delta, and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). The different classes of antibodies vary in their heavy chains; the IgE class has the epsilon type. This domain (Cepsilon2) of IgE is in place of the flexible hinge region found in IgG.
Probab=96.63 E-value=0.01 Score=46.29 Aligned_cols=68 Identities=12% Similarity=0.246 Sum_probs=41.3
Q ss_pred CceEEEEEEEeeecC--CeeEEEECCEEEEeccCCccceE-----EEccCceEEEcCCCCCCCeEEEEEEEeCCce
Q psy15127 255 PRVNRLSCFAEGSPL--PSVFWTQEGSQVLMFPGNAYGHL-----HVTQEGTLRIQGVQKEDAGFFVCSALSVAGS 323 (633)
Q Consensus 255 g~~~~l~C~~~g~p~--~~v~W~~~g~~~~~~~~~~~~~~-----~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~ 323 (633)
++.++|.|.+.|.-+ ..|+|.++|..+..... ..... .....+.|.+..-...+...|+|.+......
T Consensus 14 ~~~~~L~C~a~gFyP~~I~vtW~~dg~~~~~~~~-~s~~~~~~~~Ty~~~S~L~v~~~~w~~~~~ytC~V~H~~~~ 88 (94)
T cd05847 14 SETIQLLCLISGYTPGTIEVEWLVDGQVATLVAA-STAPQKEEGSTFSTTSELNVTQEDWKSGKTYTCKVTHQGTT 88 (94)
T ss_pred CCCEEEEEEEEeEECCCCEEEEEECCEECcCcee-ecccEECCCCcEEEEEEEEEchHHhcCCCeEEEEEEECCee
Confidence 366899999999644 48899999987521100 00011 1111224556654455678999999876543
No 363
>PHA03269 envelope glycoprotein C; Provisional
Probab=96.62 E-value=0.12 Score=51.28 Aligned_cols=63 Identities=16% Similarity=0.202 Sum_probs=46.1
Q ss_pred EEEcCCCC--CCeEEEEEEe---------------cCcCCeeeeCCCceEEEcCCeEEEEEEEecc-CC--CeEEEEeCC
Q psy15127 50 LGARGALS--DDQWKLIAKE---------------ALIKPFPISEPSDATVLSGSVVEFVCRVGGD-PL--PTILWRRDD 109 (633)
Q Consensus 50 L~i~~v~~--~G~Y~C~a~~---------------v~~~p~~~~~~~~~~~~~G~~~~L~C~~~~~-p~--p~i~W~~~~ 109 (633)
|.|..++. +|.|.=.+.+ +..+|.+...+.. +.+|+...-.|.+... |. ..+.|++|+
T Consensus 291 L~I~sltaATeGvY~Wrv~~~~n~t~~~~~~VtV~~yr~PsVsV~p~P--VL~Ge~YkAtC~vA~YYPp~SvrlrWf~ng 368 (566)
T PHA03269 291 LHILSLDASTEGTYIWRVIHTANKNVINEHHITVMSYKRPNITVIGDP--VLLGNPYAAYCKVNKYYPPHSVIVKWTSNF 368 (566)
T ss_pred eEEeecccccCceEEEEEecCCCCceeeeeEEEEEEecCCCccccCCc--cccCCCceEEEEeeeecCCCceEEEEEeCC
Confidence 99999998 9999877543 2344544444333 6789999999999764 32 259999999
Q ss_pred ccCCC
Q psy15127 110 GKMPT 114 (633)
Q Consensus 110 ~~i~~ 114 (633)
.++..
T Consensus 369 ~~V~~ 373 (566)
T PHA03269 369 GNIGK 373 (566)
T ss_pred cccCc
Confidence 88864
No 364
>cd05766 IgC_MHC_II_beta Class II major histocompatibility complex (MHC) beta chain immunoglobulin domain. IgC_MHC_II_beta: Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class II beta chain. MHC class II molecules play a key role in the initiation of the antigen-specific immune reponse. In both humans and in mice these molecules have been shown to be expressed constitutively on the cell surface of professional antigen-presenting cells (APCs), for example on B-lymphocytes, monocytes, and macrophages. The expression of these molecules has been shown to be induced in nonprofessional APCs such as keratinocyctes, and they are expressed on the surface of activated human T cells and on T cells from other species. The MHC II molecules present antigenic peptides to CD4(+) T-lymphocytes. These peptides derive mostly from protelytic processing via the endocytic pathway, of antigens internalized by the APC. These peptides bind to the MHC class II molecules in the endosome be
Probab=96.60 E-value=0.012 Score=45.91 Aligned_cols=66 Identities=17% Similarity=0.185 Sum_probs=39.0
Q ss_pred CCceEEEEEEEeeecCC--eeEEEECCEEEEeccCCccceEEEccCceEEEc---CCCCCCCeEEEEEEEeCC
Q psy15127 254 HPRVNRLSCFAEGSPLP--SVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQ---GVQKEDAGFFVCSALSVA 321 (633)
Q Consensus 254 ~g~~~~l~C~~~g~p~~--~v~W~~~g~~~~~~~~~~~~~~~~~~~~~l~i~---~~~~~d~G~Y~C~a~n~~ 321 (633)
.++.++|.|.+.|.-++ .++|++||..+... ..........++++.+. .+...+...|+|.+....
T Consensus 13 ~~~~~~L~C~~~gFyP~~i~v~W~~~g~~~~~~--~~~~~~~~~~dgTy~~~s~L~~~~~~~~~ysC~V~H~~ 83 (94)
T cd05766 13 LSHPHLLVCHVWGFYPPEITVKWFKNGQEETEG--VVSTELIPNGDWTYQILVMLETTPSRGDTYTCVVEHSS 83 (94)
T ss_pred CCCCeEEEEEEeeecCCCCEEEEEECCeecCCC--ceecceEECCCCcEEEEEEEEEcCCCCCEEEEEEEeCC
Confidence 45789999999996443 78999999876421 11111222233322221 123345678999987653
No 365
>cd05712 Ig_Siglec_N Immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins). Ig_Siglec_N: immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins). Siglec refers to a structurally related protein family that specifically recognizes sialic acid in oligosaccharide chains of glycoproteins and glycolipids. Siglecs are type I transmembrane proteins, organized as an extracellular module composed of Ig-like domains (an N-terminal variable set of Ig-like carbohydrate recognition domains, and 1 to 16 constant Ig-like domains), followed by transmembrane and short cytoplasmic domains. Human siglecs are classified into two subgroups, one subgroup is comprised of sialoadhesin (Siglec-1), CD22 (Siglec-2), and MAG, the other subgroup is comprised of CD33-related Siglecs which include CD33 (Siglec-3) and human Siglecs 5-11.
Probab=96.59 E-value=0.012 Score=48.59 Aligned_cols=74 Identities=12% Similarity=0.100 Sum_probs=47.3
Q ss_pred ceeEEecCCceEEEEEEEeeec------CCeeEEEECCE-----EEEe-cc------CCccceEEEc-----cCceEEEc
Q psy15127 247 ASLLIWNHPRVNRLSCFAEGSP------LPSVFWTQEGS-----QVLM-FP------GNAYGHLHVT-----QEGTLRIQ 303 (633)
Q Consensus 247 ~~~~~~~~g~~~~l~C~~~g~p------~~~v~W~~~g~-----~~~~-~~------~~~~~~~~~~-----~~~~l~i~ 303 (633)
+..+....|+.++|.|...... ...+.|++... .+.. .. ..-..|+... .+.+|.|.
T Consensus 6 P~~v~~~~G~~VtL~C~f~~~~~~~~~~~~~~~Wykq~~g~~~~~~~~~~~~~~~~~~~f~gR~~~~~~~~~~~~sL~I~ 85 (119)
T cd05712 6 PKSVSVQEGLCVLIPCSFSYPADWPVSNGVHGIWYKGHPYPKNRPPVATNNRSRLVHESTRGRFRLLGDLGKKNCSLLIS 85 (119)
T ss_pred CCEEEEeccccEEEEEEeeCcccccCCCceEEEEEeCCCCCCCCCcEEEcCCCccccccccccEEEecCCCCCEEEEEEc
Confidence 3445778899999999875322 24689998532 1111 00 0111354442 12379999
Q ss_pred CCCCCCCeEEEEEEEeC
Q psy15127 304 GVQKEDAGFFVCSALSV 320 (633)
Q Consensus 304 ~~~~~d~G~Y~C~a~n~ 320 (633)
+++.+|+|.|.|.+...
T Consensus 86 ~l~~~Dsg~Y~C~~~~~ 102 (119)
T cd05712 86 DAQPEDSGKYFFRVELG 102 (119)
T ss_pred cCChhhCeEEEEEEEcC
Confidence 99999999999988664
No 366
>KOG0613|consensus
Probab=96.48 E-value=0.04 Score=61.48 Aligned_cols=211 Identities=16% Similarity=0.119 Sum_probs=122.2
Q ss_pred EEEEEEEeeecCCeeEEEECCEEEEeccCCccceEEEccCceEEEcCCCCCCCeEEEEEEEeCCceeEEEEEEEEEeccc
Q psy15127 258 NRLSCFAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVREFCV 337 (633)
Q Consensus 258 ~~l~C~~~g~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~~~ 337 (633)
+.+.|. .|.|.+...|+++|..+.. +.....-....+..+.|..+-..+.|.|.-.+.|..+....
T Consensus 208 v~~v~s-~gqp~~~~~~~~~g~~i~~--~~~~~~s~t~e~s~~~i~~~l~~~~G~~~~~~~~~l~e~~~----------- 273 (1205)
T KOG0613|consen 208 VRAVVS-AGQPEPLERWEILGELIAP--GSAPSMSVTLEASDRKIQLTLRAPRGPYSAHILGYLIEQRK----------- 273 (1205)
T ss_pred EEEEEe-cCCCccchhhhhcccccCC--CCccccccccchhheeeeEEeecCCCchHHHHhcchhhhcc-----------
Confidence 444454 4899999999999987753 22223333334445666666667778887776666554433
Q ss_pred CCCceEEeCCCccccCCCCCceEEecccccCCEEEEEEEEcCCcceeEEEEEEeecCCC---CC--ceecCCCCCCCCCC
Q psy15127 338 LPKGTFTLGQPNLATGNSDLRRIACDLRETDSGLYTCTASSESGETSWSASLSVEPRPG---PH--AVHRMPDSGLFPGP 412 (633)
Q Consensus 338 ~p~p~~~~~~~~~~~g~p~~~~~i~~~~~~d~g~y~c~a~n~~g~~~~~~~l~v~~~p~---~~--~~~~~~~~~~~p~~ 412 (633)
+-+...+.+.+....+.+.|+|...+..|.....+.-.+..... +. ............+-
T Consensus 274 ---------------~~~~~t~~i~~~~~~~~~s~t~~~~~~~~q~~~~v~~~~~i~~~~~~p~~~~~aaa~~~~~~v~~ 338 (1205)
T KOG0613|consen 274 ---------------HKGGNTKTIQNDGPEPELSWTVADKRQGCQDRFKVTEEAPIGKGKPGPESLQAAAARPPEVPVGL 338 (1205)
T ss_pred ---------------cCCCccccccccCCccccceeeecccCCcccceeeeEEeeccccccCchhhhhhccCCccccccc
Confidence 11222334455566777888888888888776555444332211 11 11111111222233
Q ss_pred CCCcEEEEeeCCeEEEEeCCCCCCCCCCcceeEEEEEEEEecCCCCeEE-EEEeeeeceEEEecCCCCCeEEEEEEEEec
Q psy15127 413 PAAPVILNTTRGSVTLGWGEPEPRGGGVAPVIGYTVEYFSSDLQTGWVV-AAHRITSTSITVSDLKPDTSYMFIVRAENS 491 (633)
Q Consensus 413 p~~~~~~~~~~~~i~l~W~~~~~~~~~~~~i~~Y~v~~~~~~~~~~~~~-~~~~~~~~~~~i~~L~p~~~Y~~~v~a~n~ 491 (633)
+............+.+.|....... .....+|...-.... ...|.. .......+.+.+.++.++..|..++.|.|.
T Consensus 339 ~~~~~v~a~d~~~v~m~~~~~~~~~--p~~~~~~~~~~~~~~-~~~~~~~~~~~~ts~~~~~~~~~~~e~~~~~~~a~n~ 415 (1205)
T KOG0613|consen 339 VRNLSVTARDNTLVEMPTALSGTQK--PDEAQGYHGEEVSSE-SLGALPCPVGTVTSHTYTIKDAGPGEGYFTRVPAVNK 415 (1205)
T ss_pred cccceeccccCcceeecccccCCcC--Cchheeecccccccc-cccccccccccccCcchhhhhcCcccccccccceecc
Confidence 3344555566778888888776543 122444444332221 122221 112234578899999999999999999999
Q ss_pred cccCCCCCC
Q psy15127 492 HGLGIPSPV 500 (633)
Q Consensus 492 ~G~g~~s~~ 500 (633)
.|.......
T Consensus 416 ~g~~~~~~~ 424 (1205)
T KOG0613|consen 416 GGTEQTIAE 424 (1205)
T ss_pred CCcccccch
Confidence 998665443
No 367
>cd05767 IgC_MHC_II_alpha Class II major histocompatibility complex (MHC) alpha chain immunoglobulin domain. IgC_MHC_II_alpha: Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class II alpha chain. MHC class II molecules play a key role in the initiation of the antigen-specific immune reponse. In both humans and in mice these molecules have been shown to be expressed constitutively on the cell surface of professional antigen-presenting cells (APCs), for example on B-lymphocytes, monocytes, and macrophages. The expression of these molecules has been shown to be induced in nonprofessional APCs such as keratinocyctes, and they are expressed on the surface of activated human T cells and on T cells from other species. The MHC II molecules present antigenic peptides to CD4(+) T-lymphocytes. These peptides derive mostly from protelytic processing via the endocytic pathway, of antigens internalized by the APC. These peptides bind to the MHC class II molecules in the endosom
Probab=96.45 E-value=0.014 Score=45.46 Aligned_cols=61 Identities=21% Similarity=0.293 Sum_probs=37.2
Q ss_pred CceEEEEEEEeeecC--CeeEEEECCEEEEeccCCccceEEEccCc------eEEEcCCCCCCCeEEEEEEEeC
Q psy15127 255 PRVNRLSCFAEGSPL--PSVFWTQEGSQVLMFPGNAYGHLHVTQEG------TLRIQGVQKEDAGFFVCSALSV 320 (633)
Q Consensus 255 g~~~~l~C~~~g~p~--~~v~W~~~g~~~~~~~~~~~~~~~~~~~~------~l~i~~~~~~d~G~Y~C~a~n~ 320 (633)
++..+|.|.+.|.-+ ..++|.+||..+.. +..........++ .|.+. +.+...|+|.+.-.
T Consensus 15 ~~~~tL~C~a~gFyP~~I~v~W~~~g~~~~~--~~~~~~~~~~~Dgty~~~s~L~v~---~~~~~~ytC~V~H~ 83 (94)
T cd05767 15 GEPNTLICFVDNFFPPVLNVTWLKNGVPVTD--GVSETRYYPRQDLSFQKFSYLNFT---PEEGDIYSCIVEHW 83 (94)
T ss_pred CCCeEEEEEEEEEECCcCEEEEEECCeEccC--ceEEeeeEeCCCCcEEEEEEEEEE---CCCCCeEEEEEEeC
Confidence 355799999999644 48899999987632 1111112222233 34443 34567999999654
No 368
>PHA03270 envelope glycoprotein C; Provisional
Probab=96.40 E-value=0.33 Score=47.73 Aligned_cols=63 Identities=14% Similarity=0.167 Sum_probs=46.8
Q ss_pred eEEEcCCCC--CCeEEEEEEe--------------cCcCCeeeeCCCceEEEcCCeEEEEEEEecc-CC--CeEEEEeCC
Q psy15127 49 VLGARGALS--DDQWKLIAKE--------------ALIKPFPISEPSDATVLSGSVVEFVCRVGGD-PL--PTILWRRDD 109 (633)
Q Consensus 49 ~L~i~~v~~--~G~Y~C~a~~--------------v~~~p~~~~~~~~~~~~~G~~~~L~C~~~~~-p~--p~i~W~~~~ 109 (633)
.|.|..++. +|.|+=...+ ...+|.+...+.. +.+|+...-.|.+... |. ..+.|++|+
T Consensus 183 ~L~I~slt~aTeGvY~Wr~~~~~~~~~~~~~VtV~~yr~Psvsv~~~P--vL~Ge~Y~AtC~va~YYPp~Sv~lrWf~ng 260 (466)
T PHA03270 183 RLVIQELTLATQGMYYWARGPADRPHRYGTWTRVRMFRRPSLSIRPHA--VLEGEPFGATCVAANYYPGDRAAFRWFEGG 260 (466)
T ss_pred eEEEEEcccccceEEEEEEecCCCceeeeeEEEEEEecCCcccccCCc--cccCCCceEEEEeeeecCCCceEEEEEeCC
Confidence 399999998 9999999655 2334554444333 6789999999999764 32 259999999
Q ss_pred ccCC
Q psy15127 110 GKMP 113 (633)
Q Consensus 110 ~~i~ 113 (633)
.++.
T Consensus 261 ~~V~ 264 (466)
T PHA03270 261 DEVF 264 (466)
T ss_pred cccc
Confidence 9885
No 369
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=96.37 E-value=4.3 Score=50.44 Aligned_cols=69 Identities=14% Similarity=0.160 Sum_probs=46.0
Q ss_pred CCCCeEEEEEE--EeCCceEEEEEEEEEEeeccccccCCCceEEecCCcEEEEEeCCCCCCCCeEEEEECCE
Q psy15127 132 PQDEGLYICDV--ENLVGSISLRASLTVHLLRDDFRAEPKDTRVASGETALLECGPPKGQPEPTLHWKKNGQ 201 (633)
Q Consensus 132 ~~d~G~Y~C~~--~n~~g~~s~~~~l~V~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~i~W~~~~~ 201 (633)
....|.|+-.. .|..|..+....+.|..+...+.+.+....+..+..+.++-....|. ...+.|...+.
T Consensus 1480 Y~~~GtYtVtLTvtN~~Gsst~T~~VtV~~pV~~~tinas~~~vpl~~sV~Fta~~s~Gs-~v~ysWdFGDg 1550 (2740)
T TIGR00864 1480 FNSPGDFNIRLAAANEVGKNEATLNVAVKARVRGLTINASLTNVPLNGSVHFEAHLDAGD-DVRFSWILCDH 1550 (2740)
T ss_pred cCCCceEEEEEEEECCCCceEEEEEEEEeccccceEEcCCCccccccceEEEEEEccCCC-ceeEEEEeCCC
Confidence 45689998875 57778877788888877634455555555555667788875533443 55899987543
No 370
>cd07691 Ig_CD3_gamma_delta Immunoglobulin (Ig)-like domain of CD3 gamma and delta chains. Ig_CD3_gamma_delta; immunoglobulin (Ig)-like domain of CD3 gamma and delta chains. CD3 is a T cell surface receptor that is associated with alpha/beta T cell receptors (TCRs). The CD3 complex consists of one gamma, one delta, two epsilon, and two zeta chains. The CD3 subunits form heterodimers as gamma/epsilon, delta/epsilon, and zeta/zeta. The gamma, delta, and epsilon chains each contain an extracellular Ig domain, whereas the extracellular domains of the zeta chains are very small and have unknown structure. The CD3 domain participates in intracellular signalling once the TCR has bound an MHC/antigen complex.
Probab=96.35 E-value=0.015 Score=41.10 Aligned_cols=49 Identities=16% Similarity=0.379 Sum_probs=37.0
Q ss_pred CceEEEEEEEeeecCCeeEEEECCEEEEeccCCccceEEEccCceEEEcCCCCCCCeEEEEEEEe
Q psy15127 255 PRVNRLSCFAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALS 319 (633)
Q Consensus 255 g~~~~l~C~~~g~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n 319 (633)
.+.|.|.|.+ ..+|.|++ |..+. ...+.+|.+-....+-.|.|.|.+.+
T Consensus 6 ~~~V~L~C~~----~tsi~W~k-G~~~~-----------~~~~~tlnLGs~~~DPRG~Y~C~~s~ 54 (69)
T cd07691 6 EGKVFLKCNG----ATNITWKK-GKEIL-----------EVSNTLLDLGSRINDPRGTYSCKESE 54 (69)
T ss_pred CceEEEEecC----CCcEEEec-Ccccc-----------cccccEEeccCcccCCCcceEecCcc
Confidence 3678999965 25699999 65442 11255889999999999999999876
No 371
>cd04985 IgC_CH1 CH1 domain (first constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH1: The first immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fab antigen-binding fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=96.35 E-value=0.021 Score=44.66 Aligned_cols=61 Identities=21% Similarity=0.380 Sum_probs=38.2
Q ss_pred cCCeEEEEEEEecc-CC-CeEEEEeCCccCCCCCe---EEcc-c------ceEEEccCCCCCCeEEEEEEEeCC
Q psy15127 85 SGSVVEFVCRVGGD-PL-PTILWRRDDGKMPTGRA---KILD-D------RSLQIENVGPQDEGLYICDVENLV 146 (633)
Q Consensus 85 ~G~~~~L~C~~~~~-p~-p~i~W~~~~~~i~~~~~---~~~~-~------~~L~i~~v~~~d~G~Y~C~~~n~~ 146 (633)
.++.++|.|.+.+. |. ..|+|+|||.. ..+.. .... + ..|.|..-.......|+|.|....
T Consensus 15 ~~~~~~L~C~a~gFyP~~i~vtW~k~g~~-~~~~~~~~~~~~~dgty~~~s~L~v~~~~w~~~~~ytC~V~H~~ 87 (95)
T cd04985 15 SSDSVTLGCLATGFLPEPVTFTWNSGSNS-TSGVKTYPAVLQSGGLYTASSQLTVPASEWKGKESFYCKVEHPS 87 (95)
T ss_pred CCCcEEEEEEEeeEECCCcEEEEeECCEE-CCCcEECCCEeCCCCCEEEEEEEEEeHHHcCCCCcEEEEEEeCC
Confidence 46679999999885 43 36899999997 33211 1111 2 245554433334678999998653
No 372
>cd07704 Ig2_Nectin-3-4_like Second immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3), nectin-4 (poliovirus receptor related protein 4) and similar proteins. Ig2_Nectin-3-4_like: domain similar to the second immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3) and nectin-4 (poliovirus receptor related protein 4). Nectin-3 and nectin-4 belong to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectin-2 and nectin-3 localize at Sertoli-spermatid junctions where they form heterophilic trans-interactions between the cells that are essential for the formation and maintenance of the junctions and for spermatid development. Nect
Probab=96.34 E-value=0.019 Score=44.64 Aligned_cols=67 Identities=10% Similarity=0.153 Sum_probs=46.2
Q ss_pred ceEEEcCCeEEE-EEEE-eccCCCeEEEEeCCccCCCC------CeEEcccceEEEccCCCCCCeEEEEEEEeCC
Q psy15127 80 DATVLSGSVVEF-VCRV-GGDPLPTILWRRDDGKMPTG------RAKILDDRSLQIENVGPQDEGLYICDVENLV 146 (633)
Q Consensus 80 ~~~~~~G~~~~L-~C~~-~~~p~p~i~W~~~~~~i~~~------~~~~~~~~~L~i~~v~~~d~G~Y~C~~~n~~ 146 (633)
...+.+|+.+.+ .|.+ .|.|.+.|+|+.+....... .....-.+.|.+...+.+|...++|.+....
T Consensus 10 ~~~~~~g~~~~vA~C~sa~gkPaa~IsW~~~~~G~~~~~~~~~~ngT~TV~S~~~l~p~r~d~G~~vtC~V~H~a 84 (97)
T cd07704 10 SLLIDGGNGTTLAACCAAEGRPAADVTWETNVYGTSESHSQEHPNGTTTVTSEYIWVPSRHANGHPLTCVVSHPA 84 (97)
T ss_pred eeEeecCcceeEEEEEccCCccCCEeEEeCCCCCccceeeecCCCCCEEEEEEEEEEeCHHHCCcEEEEEEeCcc
Confidence 456778899999 9988 47899999999874322111 1111112467777777788899999998664
No 373
>PF07654 C1-set: Immunoglobulin C1-set domain; InterPro: IPR003597 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents C1-set domains, which are classical Ig-like domains resembling the antibody constant domain. C1-set domains are found almost exclusively in molecules involved in the immune system, such as in immunoglobulin light and heavy chains, in the major histocompatibility complex (MHC) class I and II complex molecules [, ], and in various T-cell receptors.; PDB: 3BVN_D 3BXN_A 3PWV_E 3L9R_F 2XFX_B 1BMG_A 1K8I_A 3M1B_G 3M17_C 1EXU_A ....
Probab=96.33 E-value=0.013 Score=44.70 Aligned_cols=60 Identities=25% Similarity=0.400 Sum_probs=41.4
Q ss_pred cCCeEEEEEEEecc-CCC-eEEEEeCCccCCCCCeE---E-ccc------ceEEEccCCCCCCeEEEEEEEeCCc
Q psy15127 85 SGSVVEFVCRVGGD-PLP-TILWRRDDGKMPTGRAK---I-LDD------RSLQIENVGPQDEGLYICDVENLVG 147 (633)
Q Consensus 85 ~G~~~~L~C~~~~~-p~p-~i~W~~~~~~i~~~~~~---~-~~~------~~L~i~~v~~~d~G~Y~C~~~n~~g 147 (633)
.++.++|.|.+.+. |.. .|+|+++|..+..+... . ..+ +.|.+. ..+...|+|.|.....
T Consensus 7 ~~~~~~L~C~v~~f~P~~i~v~W~~~~~~~~~~~~~~~~~~~~dgty~~~s~l~v~---~~~~~~ysC~V~H~~l 78 (83)
T PF07654_consen 7 LGGSVTLTCLVSGFYPKDITVTWLKNGKEVTEGVETTPPPPNSDGTYSVTSSLTVT---WNSGDEYSCRVTHESL 78 (83)
T ss_dssp STSEEEEEEEEEEEBSSTEEEEEEETTEEETTTEEEEEEEEETTSEEEEEEEEEEE---TTTTGGEEEEEEETTS
T ss_pred CCCCEEEEEEEEEEECCCcEEEEEeccceeeeeeeecccccccccceeeeEEEEec---CCCCCEEEEEEEECCC
Confidence 48899999999874 433 69999999987543211 1 122 345555 6677799999986543
No 374
>PF09294 Interfer-bind: Interferon-alpha/beta receptor, fibronectin type III; InterPro: IPR015373 Members of this family adopt a secondary structure consisting of seven beta-strands arranged in an immunoglobulin-like beta-sandwich, in a Greek-key topology. They are required for binding to interferon-alpha []. ; PDB: 1A21_A 3LQM_B 3ELA_T 1AHW_C 2A2Q_T 1TFH_B 1FAK_T 1WSS_T 1W2K_T 2FIR_T ....
Probab=96.32 E-value=0.024 Score=45.67 Aligned_cols=81 Identities=12% Similarity=0.035 Sum_probs=46.5
Q ss_pred ecccceEEEEEEEecCCC-----cccccchhhhhcceeEEEEEEcCCCcccceeeeeeccceeEeecCCccceEEeeccc
Q psy15127 537 PTASTAVRITWEVSWGSV-----PQHLLDEARARLGTKVVNLRELIPTASTAVRITWEKYNMATVMNAATTTSYTVTHLR 611 (633)
Q Consensus 537 ~~~~~si~v~W~~p~~~~-----p~~~~~~~~~i~~y~~i~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~i~~L~ 611 (633)
.....+|.|.+.+|..+. .....+.-+ -..| .|.|.+..... ...........++|.+|.
T Consensus 11 ~~~~~~l~V~i~~P~~~~~~~~~~~~l~~~~~-~~~Y-~v~~~~~~~~~-------------~~~~~~~~~~~~~l~~L~ 75 (106)
T PF09294_consen 11 SSCGGSLHVTIKPPMTPLRAGGKNSSLRDIYP-SLSY-NVSYWKNGSNE-------------KKKEIETKNSSVTLSDLK 75 (106)
T ss_dssp EEETTEEEEEEEESEEEEECSSSEEEHHHHHG-G-EE-EEEEEETTTSC-------------EEEEEESSSEEEEEES--
T ss_pred EECCCEEEEEEECCCcccccCCCCCcHHHhCC-CeEE-EEEEEeCCCcc-------------ceEEEeecCCEEEEeCCC
Confidence 567899999999761000 000001111 2458 88887776652 011123456778999999
Q ss_pred cceeEEEEEec--cccccccccC
Q psy15127 612 KFTKYEFFLVP--FFKTVEGARL 632 (633)
Q Consensus 612 ~~t~Y~~~v~a--~n~~g~g~~s 632 (633)
|++.|.|+|.| ....-.|.+|
T Consensus 76 p~t~YCv~V~~~~~~~~~~s~~S 98 (106)
T PF09294_consen 76 PGTNYCVSVQAFSPSQNKNSQPS 98 (106)
T ss_dssp TTSEEEEEEEEEECSSTEEEEEB
T ss_pred CCCCEEEEEEEEeccCCCcCCCC
Confidence 99999999999 2233445554
No 375
>KOG1480|consensus
Probab=96.32 E-value=0.0055 Score=63.90 Aligned_cols=77 Identities=22% Similarity=0.431 Sum_probs=63.3
Q ss_pred CeeeeCCCceEEEcCCeEEEEEEE-eccCCCeEEEEeCCccCCCC-CeEEcccceEEEccCCCCCCeEEEEEEEeCCce
Q psy15127 72 PFPISEPSDATVLSGSVVEFVCRV-GGDPLPTILWRRDDGKMPTG-RAKILDDRSLQIENVGPQDEGLYICDVENLVGS 148 (633)
Q Consensus 72 p~~~~~~~~~~~~~G~~~~L~C~~-~~~p~p~i~W~~~~~~i~~~-~~~~~~~~~L~i~~v~~~d~G~Y~C~~~n~~g~ 148 (633)
-.+...|....|..+..+.|.|.. .+.|...++|++++..+... ......++.|.+..++..|.|+|+|+|.|..+.
T Consensus 130 k~f~~~p~~q~V~~~s~~~l~cr~pe~~paae~~w~k~e~~~~pd~n~~~~~d~~li~~~arlsd~~nytc~a~ni~~~ 208 (909)
T KOG1480|consen 130 KHFEQSPVGQEVQEETTLQLPCRPPEGDPKAEVEWLKNEVVIDPDANVIRASDHNLIISQARLSDSGNYTCEATNIVAK 208 (909)
T ss_pred HhhccChhhheecccccccccccCcccchhhhhhccccCCCCCccccchhhhcCCccccchhhhhcccceeeeehhhcc
Confidence 456677777788999999999987 46788889999999887553 344456789999999999999999999988766
No 376
>PF08204 V-set_CD47: CD47 immunoglobulin-like domain; InterPro: IPR013270 This family represents the CD47 leukocyte antigen V-set like Ig domain [, ].; PDB: 2VSC_B 2JJS_D 2JJT_C.
Probab=96.31 E-value=0.0088 Score=48.87 Aligned_cols=75 Identities=17% Similarity=0.282 Sum_probs=44.4
Q ss_pred EcCCeEEEEEEEecc-----CCCeEEEEeCCccCC---CC-CeEE-------------cccceEEEccCCCCCCeEEEEE
Q psy15127 84 LSGSVVEFVCRVGGD-----PLPTILWRRDDGKMP---TG-RAKI-------------LDDRSLQIENVGPQDEGLYICD 141 (633)
Q Consensus 84 ~~G~~~~L~C~~~~~-----p~p~i~W~~~~~~i~---~~-~~~~-------------~~~~~L~i~~v~~~d~G~Y~C~ 141 (633)
.-.+++.|.|.+... +...|.|+++|..+- .. .... ..+.+|.+...+.- .|+|+|.
T Consensus 25 ~CN~tV~IPC~v~n~~~~ni~~m~VkWk~~~~~If~~dg~~~~~~~~~f~sa~i~~l~kG~aSL~~~~~~a~-~GnYTCe 103 (130)
T PF08204_consen 25 VCNDTVVIPCFVNNLEANNISEMYVKWKFKNKDIFIFDGTNNKSTSDNFPSAKISELLKGNASLKMDKSDAV-EGNYTCE 103 (130)
T ss_dssp TT-SEEEE--BBSS---SSGGGEEEEEEETTEEEEEEETTTTEEEEGGGTT-BEGGGGGTB--EEEEHHHHH--EEEEEE
T ss_pred ecCCCEEEEeEeccccccccceEEEEEEECCeEEEEEcCccceecccCccccchhHhhCCCEEEEEcchhcc-ccceEEE
Confidence 347899999999642 234699999988651 11 1110 11245777775444 8999999
Q ss_pred EEeCCceEEEEEEEEEEe
Q psy15127 142 VENLVGSISLRASLTVHL 159 (633)
Q Consensus 142 ~~n~~g~~s~~~~l~V~~ 159 (633)
|.......+..+.|....
T Consensus 104 Vt~~~~ege~~i~Lk~~~ 121 (130)
T PF08204_consen 104 VTELSREGETTIELKYRV 121 (130)
T ss_dssp EEETTEEEEEEEEEEE--
T ss_pred EEecCCCceEEEEEEEEE
Confidence 988777777777776643
No 377
>cd07697 IgC_TCR_gamma T cell receptor (TCR) gamma chain constant immunoglobulin domain. IgC_TCR_gamma; immunoglobulin (Ig) constant (C) domain of the gamma chain of gamma-delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha-beta TCRs but a small subset contain gamma-delta TCRs. Alpha-beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma-delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma-delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds.
Probab=96.30 E-value=0.02 Score=44.77 Aligned_cols=62 Identities=11% Similarity=0.153 Sum_probs=38.3
Q ss_pred EEEcCCeEEEEEEEecc-CC-CeEEEEeCCccCCCCCe---------EEcccceEEEccCCCCCCeEEEEEEEeC
Q psy15127 82 TVLSGSVVEFVCRVGGD-PL-PTILWRRDDGKMPTGRA---------KILDDRSLQIENVGPQDEGLYICDVENL 145 (633)
Q Consensus 82 ~~~~G~~~~L~C~~~~~-p~-p~i~W~~~~~~i~~~~~---------~~~~~~~L~i~~v~~~d~G~Y~C~~~n~ 145 (633)
.+..+..++|.|.+.+. |. ..++|++||..+..+.. .+...+.|.|..-. ....|+|.|...
T Consensus 12 e~~~~~~~tL~C~a~gFyP~~I~v~W~kng~~~~~~~~~~~~~~~~dty~~~S~L~vt~~~--~~~~ysC~V~H~ 84 (96)
T cd07697 12 EIEKQGQGIYLCLLENFFPDVIQVHWREGNSPSILGSQKSEKDKDNDVYSTTSWLTVTKDS--LGKKFRCIYKHE 84 (96)
T ss_pred HHccCCCEEEEEEEEEEeCCCeEEEEEECCEECcCCeEeccEecCCCEEEEEEEEEECchh--CCCeEEEEEEEC
Confidence 34446789999999884 43 36899999988654311 11112345444322 234599999763
No 378
>cd07699 IgC_L Immunoglobulin Constant domain. IgC_L: Immunoglobulin (Ig) light chain constant (C) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.
Probab=96.29 E-value=0.011 Score=46.85 Aligned_cols=66 Identities=12% Similarity=0.191 Sum_probs=41.2
Q ss_pred CCceEEEEEEEeeecC--CeeEEEECCEEEEeccCCccceEEEccCc------eEEEcCCCCCCCeEEEEEEEeCC
Q psy15127 254 HPRVNRLSCFAEGSPL--PSVFWTQEGSQVLMFPGNAYGHLHVTQEG------TLRIQGVQKEDAGFFVCSALSVA 321 (633)
Q Consensus 254 ~g~~~~l~C~~~g~p~--~~v~W~~~g~~~~~~~~~~~~~~~~~~~~------~l~i~~~~~~d~G~Y~C~a~n~~ 321 (633)
.++.++|.|.+.|.-+ ..|.|++||..+.... .........++ .|.+..-..++...|+|.+....
T Consensus 16 ~~~~~~L~C~~~gfyP~~i~v~W~~~g~~~~~~~--~~~~~~~~~dgty~~~s~L~v~~~~w~~~~~~sC~V~H~~ 89 (100)
T cd07699 16 KSGKATLVCLINDFYPGFATVQWKVDGATVSSGV--QTSTTEQQSDNTYSLSSYLTLTKSDWNKHKVYTCEVTHEG 89 (100)
T ss_pred cCCCcEEEEEEEeEECCCCEEEEEECCEECcccE--eccccEECCCCCEEEEEEEEEcHHHhCCCCeEEEEEEecC
Confidence 3567899999998544 4889999999864111 11111112233 35555555556789999997653
No 379
>PHA03376 BARF1; Provisional
Probab=96.16 E-value=0.018 Score=49.60 Aligned_cols=64 Identities=22% Similarity=0.282 Sum_probs=41.9
Q ss_pred ceEEEcCCCC--CCeEEEEEEe-----------cCcCC-eeeeCCCceEEEcCCeEEEEEEEeccCCCeEEEEeCCcc
Q psy15127 48 SVLGARGALS--DDQWKLIAKE-----------ALIKP-FPISEPSDATVLSGSVVEFVCRVGGDPLPTILWRRDDGK 111 (633)
Q Consensus 48 ~~L~i~~v~~--~G~Y~C~a~~-----------v~~~p-~~~~~~~~~~~~~G~~~~L~C~~~~~p~p~i~W~~~~~~ 111 (633)
-+|.|.+++. .|+|+|.+.. ...+| .+.........-.-+..++.|...|.|.|.++|.-+...
T Consensus 87 vsLvI~~l~lSDdGtY~C~fQkge~~~~k~ehLt~V~~~~Lsv~a~~~dFp~~~~~~i~C~sggfP~P~~~Wle~~~~ 164 (221)
T PHA03376 87 FFLVVTAANISHDGNYLCRMKLGETEVTKQEHLSVVKPLTLSVHSERSQFPDFSVLTVTCTVNAFPHPHVQWLMPEGV 164 (221)
T ss_pred EEEEEEeeeecCCceEEEEEEcCCCceeeeeeeeeeecceEEEEeccccCCCCCeeEEEEecCCcCCchheeccccCC
Confidence 4599999998 9999999987 11121 111111000001135678999988899999999987653
No 380
>cd07692 Ig_CD3_epsilon Immunoglobulin (Ig)-like domain of CD3 epsilon chain. Ig_CD3_epsilon; immunoglobulin (Ig)-like domain of CD3 epsilon chain. CD3 is a T cell surface receptor that is associated with alpha/beta T cell receptors (TCRs). The CD3 complex consists of one gamma, one delta, two epsilon, and two zeta chains. The CD3 subunits form heterodimers as gamma/epsilon, delta/epsilon, and zeta/zeta. The gamma, delta, and epsilon chains each contain an extracellular Ig domain, whereas the extracellular domains of the zeta chains are very small and have unknown structure. The CD3 domain participates in intracellular signalling once the TCR has bound an MHC/antigen complex.
Probab=96.08 E-value=0.0081 Score=42.15 Aligned_cols=50 Identities=14% Similarity=0.360 Sum_probs=34.4
Q ss_pred CCceEEEEEEEeeecCCeeEEEECCEEEEeccCCccceEEEccCceEEEcCCCCCCCeEEEEEEEe
Q psy15127 254 HPRVNRLSCFAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALS 319 (633)
Q Consensus 254 ~g~~~~l~C~~~g~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n 319 (633)
.|.+|+|+|...+. .+.|.+++..+. + .+..+.+.+-. ++.|.|+|.+.+
T Consensus 6 sGTtVtlTCP~~~~---~i~W~~n~~~~~---g---------~~~~~~~~~~~-e~~G~Y~C~~~~ 55 (65)
T cd07692 6 SGTTVTVTCPLSGD---DIKWKKNDQVSQ---G---------SDEKYLSLNHF-SSSGYYHCTADN 55 (65)
T ss_pred eccEEEEECCCCCC---CceEEeCCccCC---C---------CCceEEeeccC-CCCceEEEEeCC
Confidence 46899999976533 299999985442 1 22245555555 889999999954
No 381
>cd07689 Ig2_VCAM-1 Second immunoglobulin (Ig)-like domain of vascular endothelial cell adhesion molecule-1 (VCAM-1, CD106) and intercellular cell adhesion molecule-1 (ICAM-1, CD54) and similar proteins. Ig2_ VCAM-1_like: domain similar to the second immunoglobulin (Ig)-like domain of vascular endothelial cell adhesion molecule-1 (VCAM-1, CD106). During the inflammation process, these molecules recruit leukocytes onto the vascular endothelium before extravasation to the injured tissues. The interaction of VCAM-1 binding to the beta1 integrin very late antigen (VLA-4) expressed by lymphocytes and monocytes mediates the adhesion of leucocytes to blood vessel walls, and regulates migration across the endothelium. During metastasis, some circulating cancer cells extravasate to a secondary site by a similar process. VCAM-1 may be involved in organ targeted tumor metastasis and may also act as host receptors for viruses and parasites. VCAM-1 contains seven Ig domains.
Probab=95.93 E-value=0.043 Score=42.43 Aligned_cols=63 Identities=13% Similarity=0.162 Sum_probs=40.8
Q ss_pred EEcCCeEEEEEEEec-cCC--CeEEEEeCCccCCCCCeEE--------cccceEEEccCCCCCCeEEEEEEEeC
Q psy15127 83 VLSGSVVEFVCRVGG-DPL--PTILWRRDDGKMPTGRAKI--------LDDRSLQIENVGPQDEGLYICDVENL 145 (633)
Q Consensus 83 ~~~G~~~~L~C~~~~-~p~--p~i~W~~~~~~i~~~~~~~--------~~~~~L~i~~v~~~d~G~Y~C~~~n~ 145 (633)
+.+|+.+++.|.+.+ .|. ..+.|+++...+....+.. .....++|.....+|..+|+|.|.-.
T Consensus 12 l~~G~~vtv~C~v~~v~P~~~l~v~LlkG~~~l~~~~f~~~~~~ks~~~~~~~vtftptreD~g~~fsC~A~L~ 85 (99)
T cd07689 12 LEEGKPVTVKCEVPDVYPFDRLEIELLKGETLLPSKSFLEDMDKKSLETKSLEVTFTPTIEDIGKVLVCRAKLH 85 (99)
T ss_pred ccCCceEEEEEEecCcccCCceEEEEecCcceecccccccccccCCCCCcceeEEEecchhhCCcEEEEEEEEe
Confidence 479999999999964 343 4699998777664332211 01235666554444445999999643
No 382
>PF07654 C1-set: Immunoglobulin C1-set domain; InterPro: IPR003597 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents C1-set domains, which are classical Ig-like domains resembling the antibody constant domain. C1-set domains are found almost exclusively in molecules involved in the immune system, such as in immunoglobulin light and heavy chains, in the major histocompatibility complex (MHC) class I and II complex molecules [, ], and in various T-cell receptors.; PDB: 3BVN_D 3BXN_A 3PWV_E 3L9R_F 2XFX_B 1BMG_A 1K8I_A 3M1B_G 3M17_C 1EXU_A ....
Probab=95.93 E-value=0.043 Score=41.82 Aligned_cols=62 Identities=16% Similarity=0.257 Sum_probs=39.3
Q ss_pred CceEEEEEEEeeecCC--eeEEEECCEEEEeccCCccceEEEccCc------eEEEcCCCCCCCeEEEEEEEeCC
Q psy15127 255 PRVNRLSCFAEGSPLP--SVFWTQEGSQVLMFPGNAYGHLHVTQEG------TLRIQGVQKEDAGFFVCSALSVA 321 (633)
Q Consensus 255 g~~~~l~C~~~g~p~~--~v~W~~~g~~~~~~~~~~~~~~~~~~~~------~l~i~~~~~~d~G~Y~C~a~n~~ 321 (633)
++.++|.|.+.+.-+. .|.|.++|..+.... .........++ .|.+. ..+...|+|.+....
T Consensus 8 ~~~~~L~C~v~~f~P~~i~v~W~~~~~~~~~~~--~~~~~~~~~dgty~~~s~l~v~---~~~~~~ysC~V~H~~ 77 (83)
T PF07654_consen 8 GGSVTLTCLVSGFYPKDITVTWLKNGKEVTEGV--ETTPPPPNSDGTYSVTSSLTVT---WNSGDEYSCRVTHES 77 (83)
T ss_dssp TSEEEEEEEEEEEBSSTEEEEEEETTEEETTTE--EEEEEEEETTSEEEEEEEEEEE---TTTTGGEEEEEEETT
T ss_pred CCCEEEEEEEEEEECCCcEEEEEeccceeeeee--eecccccccccceeeeEEEEec---CCCCCEEEEEEEECC
Confidence 5789999999986553 799999998763110 00111112233 35555 566679999997654
No 383
>cd04986 IgC_CH2 CH2 domain (second constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH2: The second immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=95.92 E-value=0.02 Score=44.86 Aligned_cols=71 Identities=17% Similarity=0.197 Sum_probs=42.2
Q ss_pred eCCCceEEEcCCeEEEEEEEeccC---CCeEEEEeCCccCC-------CCCeEEcccceEEEccCCCCCCeEEEEEEEeC
Q psy15127 76 SEPSDATVLSGSVVEFVCRVGGDP---LPTILWRRDDGKMP-------TGRAKILDDRSLQIENVGPQDEGLYICDVENL 145 (633)
Q Consensus 76 ~~~~~~~~~~G~~~~L~C~~~~~p---~p~i~W~~~~~~i~-------~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~n~ 145 (633)
..|..-.+..+..++|.|.+.+.- ...++|.++|..-. .....+.-.+.|.|..-.......|+|.|...
T Consensus 9 ~pPs~e~l~~~~~atLtClV~~f~~P~~i~V~W~~~g~~~~~~t~~~~~~dgTys~~S~L~v~~~~W~~g~~ytC~V~H~ 88 (99)
T cd04986 9 QRPALEDLLLGSSASLTCTLSGLRDPEGAVFTWTPSGGKEAVQTSAESDQCGCYSVSSVLPGCAEEWNKGEPFACTVTHP 88 (99)
T ss_pred ECcChHHhCcCCccEEEEEEeccCCCCCeEEEEEECCccCcEEcCcccCCCCCEEEEEEEEeCHHHhcCCCeEEEEEECC
Confidence 344444455788999999998743 23699999987510 00011111234555433334456799999765
Q ss_pred C
Q psy15127 146 V 146 (633)
Q Consensus 146 ~ 146 (633)
.
T Consensus 89 ~ 89 (99)
T cd04986 89 E 89 (99)
T ss_pred C
Confidence 4
No 384
>cd05768 IgC_CH4 CH4 domain (fourth constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH4: The fourth immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=95.89 E-value=0.021 Score=45.35 Aligned_cols=66 Identities=15% Similarity=0.179 Sum_probs=39.0
Q ss_pred CceEEEEEEEeeecCC--eeEEEECCEEEEeccCCccce-------EEEccCceEEEcCCCCCCCeEEEEEEEeC
Q psy15127 255 PRVNRLSCFAEGSPLP--SVFWTQEGSQVLMFPGNAYGH-------LHVTQEGTLRIQGVQKEDAGFFVCSALSV 320 (633)
Q Consensus 255 g~~~~l~C~~~g~p~~--~v~W~~~g~~~~~~~~~~~~~-------~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~ 320 (633)
++.++|.|.+.|.-+. .++|.+||..+.......... -.......|.+..-...+...|+|.+.-.
T Consensus 16 ~~~~tL~C~a~gFyP~~i~v~W~k~g~~~~~~~~~~~~~~~~~~~dgTy~~~s~L~v~~~~w~~~~~ytC~V~H~ 90 (102)
T cd05768 16 QETATLTCLVKGFSPSDIFVKWLQNGQPLSKQKYVTTAPMQEPGGNESYFLYSKLTVSAEDWNAGDVFTCVVGHE 90 (102)
T ss_pred CCceEEEEEEeeEeCCCCEEEEEECCEECCcccccccCcccccCCCCeEEEEEEEEEcHHHhcCCCcEEEEeEeC
Confidence 5789999999997554 679999998764211000000 01111224555443444567899998654
No 385
>cd07696 IgC_CH3 CH3 domain (third constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH3: The third immunoglobulin constant domain (IgC) of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=95.79 E-value=0.038 Score=43.33 Aligned_cols=36 Identities=17% Similarity=0.338 Sum_probs=26.7
Q ss_pred CCCceEEecCCcEEEEEeCCCC-CCC-CeEEEEECCEE
Q psy15127 167 EPKDTRVASGETALLECGPPKG-QPE-PTLHWKKNGQF 202 (633)
Q Consensus 167 ~~~~~~~~~g~~~~l~C~~~~~-~p~-~~i~W~~~~~~ 202 (633)
+|....+..|+.++|.|.+... +|. ..++|.|+++.
T Consensus 5 pPs~~~l~~~~~~tLtC~v~gf~yP~~i~v~W~r~~~~ 42 (96)
T cd07696 5 PPSPKQLLLTKSVKLTCLVTNLTSPEGVNVTWTRGSGE 42 (96)
T ss_pred CcCHHHhccCCCeEEEEEEeCCCCCCCcEEEEEECCeE
Confidence 4444556778999999997665 455 49999998753
No 386
>KOG4597|consensus
Probab=95.58 E-value=0.025 Score=55.70 Aligned_cols=89 Identities=15% Similarity=0.103 Sum_probs=67.3
Q ss_pred CeeeeCCCceEEEcCCeEEEEEEEeccCCCeEEEEeC---CccCCC------CCeEEcccceEEEccCCCCCCeEEEEEE
Q psy15127 72 PFPISEPSDATVLSGSVVEFVCRVGGDPLPTILWRRD---DGKMPT------GRAKILDDRSLQIENVGPQDEGLYICDV 142 (633)
Q Consensus 72 p~~~~~~~~~~~~~G~~~~L~C~~~~~p~p~i~W~~~---~~~i~~------~~~~~~~~~~L~i~~v~~~d~G~Y~C~~ 142 (633)
+.+..-|....+..|++..++|-+.|.+.+.|.|.+. +..+.. ++........|.|-+....|+|.|+|.+
T Consensus 197 c~l~~cpa~w~vg~wetcS~tCg~~G~q~r~V~c~qv~anr~~vv~~~nq~~e~p~vtstcql~ic~ewq~~a~w~tCs~ 276 (560)
T KOG4597|consen 197 CALVDCPAEWFVGDWETCSSTCGVQGRQYRVVTCEQVFANRENVVMRPNQTVENPVVTSTCQLVICNEWQADAGWYTCSA 276 (560)
T ss_pred cccccCcchhhcccchhhcccccccCCcCceeeeehhhccccceeecCccccCCcceeeeeeEEEcchhhcCCCceeecc
Confidence 4455667778889999999999999999999999873 332211 1112223357999999999999999999
Q ss_pred EeCCceEEEEEEEEEEee
Q psy15127 143 ENLVGSISLRASLTVHLL 160 (633)
Q Consensus 143 ~n~~g~~s~~~~l~V~~~ 160 (633)
.+..|...+.+.+.+...
T Consensus 277 rcg~g~~~rdv~c~s~~g 294 (560)
T KOG4597|consen 277 RCGAGFLRRDVPCSSVKG 294 (560)
T ss_pred ccccceeeccceeeeecc
Confidence 999998877777766543
No 387
>cd05719 Ig2_PVR_like Second immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155) and similar proteins. Ig2_PVR_like: domain similar to the second immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155). Poliovirus (PV) binds to its cellular receptor (PVR/CD155) to initiate infection. CD155 is a membrane-anchored, single-span glycoprotein; its extracellular region has three Ig-like domains. There are four different isotypes of CD155 (referred to as alpha, beta, gamma, and delta), these result from alternate splicing of the CD155 mRNA, and have identical extracellular domains. CD155-beta and - gamma, are secreted, CD155-alpha and delta are membrane-bound and function as PV receptors. The virus recognition site is contained in the amino-terminal domain, D1. Having the virus attachment site on the receptor distal from the plasma membrane may be important for successful initiation of infection of cells by the virus. CD155 binds in the poliovirus
Probab=95.58 E-value=0.03 Score=43.81 Aligned_cols=67 Identities=16% Similarity=0.262 Sum_probs=40.8
Q ss_pred ceEEEEEEE-eeecCCeeEEEECC--EEEEeccCCccceEEEccCceEEEcCCCCCCCeEEEEEEEeCCcee
Q psy15127 256 RVNRLSCFA-EGSPLPSVFWTQEG--SQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGST 324 (633)
Q Consensus 256 ~~~~l~C~~-~g~p~~~v~W~~~g--~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~ 324 (633)
....+.|.+ .|+|.+.|+|+++. ...........+. ....+.|.+.....+|.-.|+|.+.+..-..
T Consensus 16 ~~~va~C~s~~gkP~a~ItW~~~~~~~~~~~~~~~~~g~--~tv~S~l~~~p~~~d~G~~~tC~v~h~~l~~ 85 (95)
T cd05719 16 PVTVATCVSANGKPPATISWETTLGGEAETQSKENPNGT--VTVTSEYRLVPSREANGKELTCVVSHPTLQE 85 (95)
T ss_pred ccEEEEEECCCCcCCCEEEEEeCCCCcceeEeecCCCCC--EEEEEEEEEecCHHHCCCEEEEEEeCcccCC
Confidence 567889999 68899999999972 1110000000000 1112356676666677789999998876443
No 388
>PHA03271 envelope glycoprotein C; Provisional
Probab=95.57 E-value=2.2 Score=41.96 Aligned_cols=146 Identities=16% Similarity=0.201 Sum_probs=77.9
Q ss_pred eEEEcCCCC--CCeEEEEEEe---------------cCcCCeeeeCCCceEEEcCCeEEEEEEEeccCCC---eEEEEeC
Q psy15127 49 VLGARGALS--DDQWKLIAKE---------------ALIKPFPISEPSDATVLSGSVVEFVCRVGGDPLP---TILWRRD 108 (633)
Q Consensus 49 ~L~i~~v~~--~G~Y~C~a~~---------------v~~~p~~~~~~~~~~~~~G~~~~L~C~~~~~p~p---~i~W~~~ 108 (633)
.|.|.++.- +|.|+-...+ .+.+|.+...+. .+.+|+...-.|.+...=+| .+.|++|
T Consensus 208 ~v~I~svD~~t~Gy~~v~~~d~~N~~i~e~~~~~~v~~RPPsVsV~a~--PVL~Ge~YkAtC~vAnYYPP~SvrlrWf~n 285 (490)
T PHA03271 208 GVEIRNVDYADNGYIQVIMRDPFNRPLLDKHIYIRVCQRPASVDVLAP--PVLSGENYKASCIVRHFYPPGSVYVSWRQN 285 (490)
T ss_pred eEEEEEeecccceEEEEEecCCCCCccccceEEEEEEecCCCccccCC--ccccCCCceEEEEeeeecCCCceEEEEEeC
Confidence 488999988 9977655555 122333333332 26789999999999764222 5999999
Q ss_pred CccCCCCC--eEE---cc-------cceEEEccCCCCCCeEEEEEEEeCCceEEEEEEEEEEeeccccccCCCce-EEec
Q psy15127 109 DGKMPTGR--AKI---LD-------DRSLQIENVGPQDEGLYICDVENLVGSISLRASLTVHLLRDDFRAEPKDT-RVAS 175 (633)
Q Consensus 109 ~~~i~~~~--~~~---~~-------~~~L~i~~v~~~d~G~Y~C~~~n~~g~~s~~~~l~V~~~~p~~~~~~~~~-~~~~ 175 (633)
|.++.... ... .. -++|.+.+...+.--..+|.+.=......... .-... |.+...|.-. ....
T Consensus 286 G~~V~~~~~rdt~~~w~d~~~g~S~VSTltl~a~~~~~PPsLRCeV~W~rd~v~s~r--nAaat-P~VY~~P~ISv~Fed 362 (490)
T PHA03271 286 GNIATPRKDRDGSFWWFESGRGATLVSTITLGNSGIDPPPKISCLVAWKQGDMISTT--NATAI-PTVYHHPRISLAFKD 362 (490)
T ss_pred CccccCccccceeEEEecCCCceeEEEEEEcccccCCCCCCceEEEEEccCCceeee--ecccC-CccccCCeEEEEEeC
Confidence 98764211 111 11 12444544333334489999863222211111 22222 3333333322 3334
Q ss_pred CCcE-EEEEeCCCCCCCCeEEEEECCEEe
Q psy15127 176 GETA-LLECGPPKGQPEPTLHWKKNGQFI 203 (633)
Q Consensus 176 g~~~-~l~C~~~~~~p~~~i~W~~~~~~~ 203 (633)
|+-+ +-.|. .. ...+.|+.++...
T Consensus 363 G~AVCtA~CV-P~---gV~lrWlVgD~p~ 387 (490)
T PHA03271 363 GYAICTIECV-PS---GITVRWLVHDEPQ 387 (490)
T ss_pred CEEEEecccc-CC---CcEEEEEecCCCC
Confidence 4432 33555 22 4599998876544
No 389
>PF08204 V-set_CD47: CD47 immunoglobulin-like domain; InterPro: IPR013270 This family represents the CD47 leukocyte antigen V-set like Ig domain [, ].; PDB: 2VSC_B 2JJS_D 2JJT_C.
Probab=95.53 E-value=0.07 Score=43.74 Aligned_cols=78 Identities=14% Similarity=0.325 Sum_probs=47.2
Q ss_pred CceEEEEEEEeeec-----CCeeEEEECCEEEEeccCCccceE-------EE----ccCceEEEcCCCCCCCeEEEEEEE
Q psy15127 255 PRVNRLSCFAEGSP-----LPSVFWTQEGSQVLMFPGNAYGHL-------HV----TQEGTLRIQGVQKEDAGFFVCSAL 318 (633)
Q Consensus 255 g~~~~l~C~~~g~p-----~~~v~W~~~g~~~~~~~~~~~~~~-------~~----~~~~~l~i~~~~~~d~G~Y~C~a~ 318 (633)
.+++.|.|.+...+ ...+.|.++|..+....+...... .+ .++.+|.+.....- .|.|+|++.
T Consensus 27 N~tV~IPC~v~n~~~~ni~~m~VkWk~~~~~If~~dg~~~~~~~~~f~sa~i~~l~kG~aSL~~~~~~a~-~GnYTCeVt 105 (130)
T PF08204_consen 27 NDTVVIPCFVNNLEANNISEMYVKWKFKNKDIFIFDGTNNKSTSDNFPSAKISELLKGNASLKMDKSDAV-EGNYTCEVT 105 (130)
T ss_dssp -SEEEE--BBSS---SSGGGEEEEEEETTEEEEEEETTTTEEEEGGGTT-BEGGGGGTB--EEEEHHHHH--EEEEEEEE
T ss_pred CCCEEEEeEeccccccccceEEEEEEECCeEEEEEcCccceecccCccccchhHhhCCCEEEEEcchhcc-ccceEEEEE
Confidence 48899999996522 246899999998765544322111 00 12224666653333 699999999
Q ss_pred eCCceeEEEEEEEEE
Q psy15127 319 SVAGSTTVRAFLQVR 333 (633)
Q Consensus 319 n~~g~~~~~~~l~v~ 333 (633)
......+..+.|...
T Consensus 106 ~~~~ege~~i~Lk~~ 120 (130)
T PF08204_consen 106 ELSREGETTIELKYR 120 (130)
T ss_dssp ETTEEEEEEEEEEE-
T ss_pred ecCCCceEEEEEEEE
Confidence 988888888888775
No 390
>KOG4802|consensus
Probab=95.53 E-value=0.33 Score=47.20 Aligned_cols=128 Identities=16% Similarity=0.156 Sum_probs=81.7
Q ss_pred CceEEecccccCCEEEEEEEEcCCcceeEEEEEEeecCCCCCceecCCCCCCCCCCCCCcEEEEeeC---CeEEEEeCCC
Q psy15127 357 LRRIACDLRETDSGLYTCTASSESGETSWSASLSVEPRPGPHAVHRMPDSGLFPGPPAAPVILNTTR---GSVTLGWGEP 433 (633)
Q Consensus 357 ~~~~i~~~~~~d~g~y~c~a~n~~g~~~~~~~l~v~~~p~~~~~~~~~~~~~~p~~p~~~~~~~~~~---~~i~l~W~~~ 433 (633)
..+.+..+.+..-+.|+..|.|..|....+ .+....+.......|.+|..+++..+.. -...|-|.|+
T Consensus 209 ~~~~~t~~rPgRwyefrvaavn~~G~rGFs---------~PSkpf~ssk~pkaPp~P~dl~l~~v~~dG~~~~~v~w~P~ 279 (516)
T KOG4802|consen 209 NTYIFTDMRPGRWYEFRVAAVNAYGFRGFS---------EPSKPFPSSKNPKAPPSPNDLKLIGVQFDGRYMLKVVWCPS 279 (516)
T ss_pred ceeeeeecCcceeEEEEEeeeecccccccC---------CCCCCCCCCCCCCCCcCcccceeeeeeecceEEEEEEeCCC
Confidence 355677888888999999999999854211 1111122222223456677777665543 2467888888
Q ss_pred CCCCCCCcceeEEEEEEEEecCCCC-e--EEEEEeeeeceEEEecCCCCCeEEEEEEEEeccccCCC
Q psy15127 434 EPRGGGVAPVIGYTVEYFSSDLQTG-W--VVAAHRITSTSITVSDLKPDTSYMFIVRAENSHGLGIP 497 (633)
Q Consensus 434 ~~~~~~~~~i~~Y~v~~~~~~~~~~-~--~~~~~~~~~~~~~i~~L~p~~~Y~~~v~a~n~~G~g~~ 497 (633)
..+ .|+..|.|.|..--.+.. . ...........+.|.+|.|+..|.+.|.|+.-.|.+..
T Consensus 280 ~sd----lPv~~Yki~Ws~~v~s~k~~m~tks~~~k~thq~si~~L~Pns~Y~VevqAi~y~g~~rL 342 (516)
T KOG4802|consen 280 KSD----LPVEKYKITWSLYVNSAKASMITKSSYVKDTHQFSIKELLPNSSYYVEVQAISYLGSRRL 342 (516)
T ss_pred CCC----CcceeeEEEeehhhhhhhhhcccccceeeccchhhhhhcCCCCeEEEEEEEEEeccCccc
Confidence 754 699999998864211100 0 00001112335559999999999999999999998866
No 391
>cd07703 Ig2_Nectin-2_like Second immunoglobulin (Ig) domain of nectin-2 (also known as poliovirus receptor related protein 2 or CD112) and similar proteins. Ig2_Nectin-2_like: domain similar to the second immunoglobulin (Ig) domain of nectin-2 (also known as poliovirus receptor related protein 2 or CD112). Nectin-2 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectin-2 and nectin-3 localize at Sertoli-spermatid junctions where they form heterophilic trans-interactions between the cells that are essential for the formation and maintenance of the junctions and for spermatid development.
Probab=95.52 E-value=0.038 Score=43.08 Aligned_cols=70 Identities=14% Similarity=0.174 Sum_probs=41.4
Q ss_pred ceEEEEEEEe-eecCCeeEEEECCEEEE--eccCCccceEEEccCceEEEcCCCCCCCeEEEEEEEeCCceeEEE
Q psy15127 256 RVNRLSCFAE-GSPLPSVFWTQEGSQVL--MFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVR 327 (633)
Q Consensus 256 ~~~~l~C~~~-g~p~~~v~W~~~g~~~~--~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~ 327 (633)
....+.|.+. |.|.+.|+|+++..... .......+. ....+.|.+.....+|...|+|.+.+..-.....
T Consensus 16 ~~~va~C~s~~gkPaa~IsW~~~~~g~~~~~~~~~~~gt--~tv~S~l~~~P~~~d~Gk~ltC~v~h~al~~~~~ 88 (95)
T cd07703 16 PVPVAKCVSANGRPPARISWSSTLGGNANTTSKENGDGT--VTVTSEYSLVPTPEANGKEVTCKVEHETLQEPQL 88 (95)
T ss_pred ccEEEEEEcCCCCCCcEEEEEcCCCCCeeEEEEeCCCCC--EEEEEEEEEecCHHHCCCEEEEEEeCcccCCCeE
Confidence 4678999885 78889999999732110 000000011 1112356666656677789999999876444333
No 392
>PF10179 DUF2369: Uncharacterised conserved protein (DUF2369); InterPro: IPR019326 This is a proline-rich region of a group of proteins found from plants to fungi. The function is largely unknown, although the entry contains Fibronectin type-III domain-containing protein C4orf31, which promotes matrix assembly and cell adhesiveness.
Probab=95.48 E-value=0.13 Score=48.88 Aligned_cols=135 Identities=16% Similarity=0.112 Sum_probs=69.6
Q ss_pred eceEEEecCCCCCeEEEEEEEEeccccCCCCCCCCceeecCC---CCCCCcchHHHHHHHhCCceEEeeeeee--cccce
Q psy15127 468 STSITVSDLKPDTSYMFIVRAENSHGLGIPSPVSPITRTLGL---NSLVPQHLLDEARARLGTKVVNLRELIP--TASTA 542 (633)
Q Consensus 468 ~~~~~i~~L~p~~~Y~~~v~a~n~~G~g~~s~~~~~~~t~~~---~p~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~s 542 (633)
-..+.+.++.|+..|.+++.+.|+.... .+.-+....|... -|..|.+. .| +... -+=++
T Consensus 127 ~~~f~l~~~~~g~~Yliri~~~~~~e~~-~~~kV~aast~~~~~~~P~LP~d~-----------~I---k~f~~lrtC~S 191 (300)
T PF10179_consen 127 LRHFRLSGVKPGERYLIRIQISNSDEGP-STFKVQAASTNPSKQPYPQLPDDT-----------SI---KEFNKLRTCNS 191 (300)
T ss_pred eEEEEECCCCCCCeEEEEEEccCCCCCc-eEEEEEEecCCcccCCCCCCCCCC-----------ce---eEEcCCcccce
Confidence 4678999999999999999887754322 1111100111111 12222221 01 2233 23489
Q ss_pred EEEEEEEecCCCcccccchhhhhcceeEEEEEEcCCCcc-----------c--ce--eeeeeccce-eEee----cCCcc
Q psy15127 543 VRITWEVSWGSVPQHLLDEARARLGTKVVNLRELIPTAS-----------T--AV--RITWEKYNM-ATVM----NAATT 602 (633)
Q Consensus 543 i~v~W~~p~~~~p~~~~~~~~~i~~y~~i~~~~~~~~~~-----------~--~~--~~~w~~~~~-~~~~----~~~~~ 602 (633)
++|.|.+ .+... ..| =|+-++...... . .. ..+|..-.. .... .....
T Consensus 192 vTIAW~~----------s~d~~-~kY-Cvy~~~~~~~~~~~~~~~~~n~C~~~~sr~k~e~v~Ck~~~~~n~~~~~~~~v 259 (300)
T PF10179_consen 192 VTIAWLG----------SPDRS-IKY-CVYRREEHSNYQERSVSRMPNQCLGPESRKKSEKVLCKYFHSPNSSEDPQRAV 259 (300)
T ss_pred EEEEEec----------CCCCC-ceE-EEEEEEecCchhhhhhcccCccCCCCCccccceEEEEEEEcCCcccccccccc
Confidence 9999993 22222 567 555544444311 0 00 112221100 0000 01123
Q ss_pred ceEEeeccccceeEEEEEecccccccc
Q psy15127 603 TSYTVTHLRKFTKYEFFLVPFFKTVEG 629 (633)
Q Consensus 603 ~~~~i~~L~~~t~Y~~~v~a~n~~g~g 629 (633)
+..+|.||+||+.|.|.|.|.=..|..
T Consensus 260 ~tetI~~L~PG~~Yl~dV~~~~~~G~s 286 (300)
T PF10179_consen 260 TTETIKGLKPGTTYLFDVYVNGPSGQS 286 (300)
T ss_pred ceeecccCCCCcEEEEEEEEecCCCce
Confidence 556899999999999999988655543
No 393
>cd07697 IgC_TCR_gamma T cell receptor (TCR) gamma chain constant immunoglobulin domain. IgC_TCR_gamma; immunoglobulin (Ig) constant (C) domain of the gamma chain of gamma-delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha-beta TCRs but a small subset contain gamma-delta TCRs. Alpha-beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma-delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma-delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds.
Probab=95.45 E-value=0.096 Score=40.94 Aligned_cols=28 Identities=18% Similarity=0.247 Sum_probs=22.4
Q ss_pred CceEEEEEEEeeecC--CeeEEEECCEEEE
Q psy15127 255 PRVNRLSCFAEGSPL--PSVFWTQEGSQVL 282 (633)
Q Consensus 255 g~~~~l~C~~~g~p~--~~v~W~~~g~~~~ 282 (633)
++.++|.|.+.|.-+ ..++|.+||..+.
T Consensus 16 ~~~~tL~C~a~gFyP~~I~v~W~kng~~~~ 45 (96)
T cd07697 16 QGQGIYLCLLENFFPDVIQVHWREGNSPSI 45 (96)
T ss_pred CCCEEEEEEEEEEeCCCeEEEEEECCEECc
Confidence 467899999999644 3789999998753
No 394
>PHA02633 hypothetical protein; Provisional
Probab=95.28 E-value=0.087 Score=36.33 Aligned_cols=39 Identities=15% Similarity=0.212 Sum_probs=33.4
Q ss_pred cCceEEEcCCCCCCCeEEEEEEEeCCceeEEEEEEEEEe
Q psy15127 296 QEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVRE 334 (633)
Q Consensus 296 ~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~ 334 (633)
....|.|-++...|+|.|.|...|..-....++.|.|..
T Consensus 16 ~~~nLwilpa~~sDSGiYiC~~rn~t~c~~~si~l~V~~ 54 (63)
T PHA02633 16 NCNNMLILNPTQSDSGIYMCITKNETYSDMMKFDLCICL 54 (63)
T ss_pred ccccEEEeccccccCcEEEEEEcCCCeeEEEEEEEEEee
Confidence 344799999999999999999999888888888888864
No 395
>PHA03042 CD47-like protein; Provisional
Probab=95.28 E-value=0.056 Score=49.56 Aligned_cols=72 Identities=18% Similarity=0.262 Sum_probs=46.9
Q ss_pred EcCCeEEEEEEEecc-----CCCeEEEEeCCccCCCCCeEEcccceEEEccCCCCCCeEEEEEEEeCCceEEEEEEEEEE
Q psy15127 84 LSGSVVEFVCRVGGD-----PLPTILWRRDDGKMPTGRAKILDDRSLQIENVGPQDEGLYICDVENLVGSISLRASLTVH 158 (633)
Q Consensus 84 ~~G~~~~L~C~~~~~-----p~p~i~W~~~~~~i~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~n~~g~~s~~~~l~V~ 158 (633)
.-.+++.+.|.+... ....+.|++++..+-..... ...+|.+ +-..+-.|+|+|.|.+........++|.-.
T Consensus 29 ~CN~TV~IpC~v~n~~~~ni~~~~V~Wkf~~~~If~~n~t--n~aSL~~-~f~~~l~GNYTCEv~~l~n~gk~~IeLk~~ 105 (286)
T PHA03042 29 TCNKTIVIVCNLNLLIYYNISNIHINWKFNNKVIFKKNNT--NTSSLKF-NFSKNLSGNYTCEAINKFNKIKNTIELQYV 105 (286)
T ss_pred ecCceEEEEeecCChhhcCccceEEEEEeCCeeEEEecCC--cceEEEE-eccccCCCceeEEEeecccCccEEEEEEEE
Confidence 447899999998642 23469999999876332222 2246766 344555899999998765554555554444
No 396
>PF01108 Tissue_fac: Tissue factor; PDB: 3OG4_B 3OG6_B 1FYH_E 1FG9_D 1JRH_I 3DGC_R 3DLQ_R 1LQS_R 1Y6M_R 1J7V_R ....
Probab=95.24 E-value=0.14 Score=41.17 Aligned_cols=79 Identities=27% Similarity=0.353 Sum_probs=56.6
Q ss_pred CCCCCcEEEEeeCCeEEEEeCCCCCCCCCCcceeEEEEEEEEecCCCCeEEE--EEeeeeceEEEecCC--CCCeEEEEE
Q psy15127 411 GPPAAPVILNTTRGSVTLGWGEPEPRGGGVAPVIGYTVEYFSSDLQTGWVVA--AHRITSTSITVSDLK--PDTSYMFIV 486 (633)
Q Consensus 411 ~~p~~~~~~~~~~~~i~l~W~~~~~~~~~~~~i~~Y~v~~~~~~~~~~~~~~--~~~~~~~~~~i~~L~--p~~~Y~~~v 486 (633)
.+|.++.+... .-...|.|+++.. ......|.|+|+. .....|... ...+..+...|++.. +...|.+||
T Consensus 23 p~P~nv~~~s~-nf~~iL~W~~~~~----~~~~~~ytVq~~~-~~~~~W~~v~~C~~i~~~~Cdlt~~~~~~~~~Y~~rV 96 (107)
T PF01108_consen 23 PAPQNVTVDSV-NFKHILRWDPGPG----SPPNVTYTVQYKK-YGSSSWKDVPGCQNITETSCDLTDETSDPSESYYARV 96 (107)
T ss_dssp SSCEEEEEEEE-TTEEEEEEEESTT----SSSTEEEEEEEEE-SSTSCEEEECCEEEESSSEEECTTCCTTTTSEEEEEE
T ss_pred CCCCeeEEEEE-CCceEEEeCCCCC----CCCCeEEEEEEEe-cCCcceeeccceecccccceeCcchhhcCcCCEEEEE
Confidence 34555555444 4568899999653 3467889999993 345688877 667777888887644 789999999
Q ss_pred EEEeccccC
Q psy15127 487 RAENSHGLG 495 (633)
Q Consensus 487 ~a~n~~G~g 495 (633)
+|.-+...+
T Consensus 97 ~A~~~~~~S 105 (107)
T PF01108_consen 97 RAEVGNQTS 105 (107)
T ss_dssp EEEETTEEE
T ss_pred EEEeCCccC
Confidence 998766544
No 397
>PF01108 Tissue_fac: Tissue factor; PDB: 3OG4_B 3OG6_B 1FYH_E 1FG9_D 1JRH_I 3DGC_R 3DLQ_R 1LQS_R 1Y6M_R 1J7V_R ....
Probab=95.20 E-value=0.13 Score=41.30 Aligned_cols=75 Identities=9% Similarity=0.124 Sum_probs=51.0
Q ss_pred eeeecccceEEEEEEEecCCCcccccchhhhhcceeEEEEEEcCCCcccceeeeeecc-ceeEeecCCccceEEeeccc-
Q psy15127 534 ELIPTASTAVRITWEVSWGSVPQHLLDEARARLGTKVVNLRELIPTASTAVRITWEKY-NMATVMNAATTTSYTVTHLR- 611 (633)
Q Consensus 534 ~~~~~~~~si~v~W~~p~~~~p~~~~~~~~~i~~y~~i~~~~~~~~~~~~~~~~w~~~-~~~~~~~~~~~~~~~i~~L~- 611 (633)
++...+ -...|.|+++ .....-..| .++|+....+ .|+.. +...+. .+.+.|++..
T Consensus 29 ~~~s~n-f~~iL~W~~~---------~~~~~~~~y-tVq~~~~~~~-------~W~~v~~C~~i~----~~~Cdlt~~~~ 86 (107)
T PF01108_consen 29 TVDSVN-FKHILRWDPG---------PGSPPNVTY-TVQYKKYGSS-------SWKDVPGCQNIT----ETSCDLTDETS 86 (107)
T ss_dssp EEEEET-TEEEEEEEES---------TTSSSTEEE-EEEEEESSTS-------CEEEECCEEEES----SSEEECTTCCT
T ss_pred EEEEEC-CceEEEeCCC---------CCCCCCeEE-EEEEEecCCc-------ceeeccceeccc----ccceeCcchhh
Confidence 455554 4588999953 334466788 9999954444 38765 343333 6888887743
Q ss_pred -cceeEEEEEeccccccccc
Q psy15127 612 -KFTKYEFFLVPFFKTVEGA 630 (633)
Q Consensus 612 -~~t~Y~~~v~a~n~~g~g~ 630 (633)
+...|.+||+|.-....|+
T Consensus 87 ~~~~~Y~~rV~A~~~~~~S~ 106 (107)
T PF01108_consen 87 DPSESYYARVRAEVGNQTSD 106 (107)
T ss_dssp TTTSEEEEEEEEEETTEEEE
T ss_pred cCcCCEEEEEEEEeCCccCC
Confidence 7889999999987665543
No 398
>cd04986 IgC_CH2 CH2 domain (second constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH2: The second immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=95.07 E-value=0.057 Score=42.27 Aligned_cols=35 Identities=26% Similarity=0.462 Sum_probs=26.2
Q ss_pred CCceEEecCCcEEEEEeCCCCC-CC-CeEEEEECCEE
Q psy15127 168 PKDTRVASGETALLECGPPKGQ-PE-PTLHWKKNGQF 202 (633)
Q Consensus 168 ~~~~~~~~g~~~~l~C~~~~~~-p~-~~i~W~~~~~~ 202 (633)
|....+..++.++|.|.+..-+ |. ..+.|.++|..
T Consensus 11 Ps~e~l~~~~~atLtClV~~f~~P~~i~V~W~~~g~~ 47 (99)
T cd04986 11 PALEDLLLGSSASLTCTLSGLRDPEGAVFTWTPSGGK 47 (99)
T ss_pred cChHHhCcCCccEEEEEEeccCCCCCeEEEEEECCcc
Confidence 3334455788999999976656 64 49999999876
No 399
>PHA02982 hypothetical protein; Provisional
Probab=95.06 E-value=0.098 Score=45.77 Aligned_cols=115 Identities=15% Similarity=0.283 Sum_probs=67.3
Q ss_pred ceEEEcCCeEEEEEEEe-ccCCCeEEEEeCCccC-C----------------CCC--eE----EcccceEEEccCCCCCC
Q psy15127 80 DATVLSGSVVEFVCRVG-GDPLPTILWRRDDGKM-P----------------TGR--AK----ILDDRSLQIENVGPQDE 135 (633)
Q Consensus 80 ~~~~~~G~~~~L~C~~~-~~p~p~i~W~~~~~~i-~----------------~~~--~~----~~~~~~L~i~~v~~~d~ 135 (633)
++.+..|+.+.|.|... +..-....|+++.... . ... .. ....++|+|.+++.+..
T Consensus 33 dv~a~vd~~V~L~C~~~~~~~i~~~~W~~~~~~~la~~~~~~~~iN~~~y~~~~~kd~y~~sv~g~~STLTIkk~~i~N~ 112 (251)
T PHA02982 33 DVNATVDQEVKLQCLFKDADEISRAMWKGDAGFMLAQEANGGTGINAFNYVPGPYKDKYALSVSGNSSTFTMKKPDPQNL 112 (251)
T ss_pred hhhccCCCcEEEEecCCCcchhhhheeeCCCCeEEEeeecCcceeccccccCCccceeEEEEEeccceeEEeccCCcccC
Confidence 56678899999999863 2233457999865322 1 000 00 11246899999999999
Q ss_pred eEEEEEEEeCCceEEE-EEEEEEEeeccccccCCCceEEecC-CcEEEEEeCCCCCCCCeEEEEECCEE
Q psy15127 136 GLYICDVENLVGSISL-RASLTVHLLRDDFRAEPKDTRVASG-ETALLECGPPKGQPEPTLHWKKNGQF 202 (633)
Q Consensus 136 G~Y~C~~~n~~g~~s~-~~~l~V~~~~p~~~~~~~~~~~~~g-~~~~l~C~~~~~~p~~~i~W~~~~~~ 202 (633)
|-|+|.+....+..+. .-=|.|+.....+ ...++ ....+.|-+.+ ...+-..|..+|..
T Consensus 113 GCYtc~~ks~~~k~E~c~kCl~V~~~~V~~-------~W~e~nNeT~V~CyVgS-~~~dvp~W~V~GVv 173 (251)
T PHA02982 113 GCFTCEAKDAEGKEETCEKCLEIQKEDILY-------VVEEHNNETIITCFVGS-KHGDVPRFIVAGIV 173 (251)
T ss_pred CceEEEEecCCCchheeheeeeEecceEEE-------EEEecCCeEEEEEEEEe-ccCCCccEEEeeEE
Confidence 9999999876655322 3333342110111 12223 34567898533 33332389887764
No 400
>KOG4367|consensus
Probab=95.03 E-value=0.025 Score=54.69 Aligned_cols=81 Identities=26% Similarity=0.274 Sum_probs=62.0
Q ss_pred eeCCeEEEEeCCCCCCCCCCcceeEEEEEEEEecCCCCeEEEEEeeeeceEEEecCCCCCeEEEEEEEEeccccCCCCCC
Q psy15127 421 TTRGSVTLGWGEPEPRGGGVAPVIGYTVEYFSSDLQTGWVVAAHRITSTSITVSDLKPDTSYMFIVRAENSHGLGIPSPV 500 (633)
Q Consensus 421 ~~~~~i~l~W~~~~~~~~~~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~~~Y~~~v~a~n~~G~g~~s~~ 500 (633)
....+++++|+.|... +.+..+|.++....+. +.... .-....+..+|.+|.-++.|.-||.|.|..|.+++|..
T Consensus 450 t~nns~t~~wkqp~~~---~~~~dg~~leld~g~~-g~fre-vy~g~etmctvdglhfns~y~arvka~n~tg~s~ys~t 524 (699)
T KOG4367|consen 450 THNNSATLSWKQPPLS---TVPADGYILELDDGNG-GQFRE-VYVGKETMCTVDGLHFNSTYNARVKAFNKTGVSPYSKT 524 (699)
T ss_pred ccCCceEEEeecCCCC---CCCCcceEEEeecCCC-CceeE-EEecCceeEEecceecchhHHHHHHHhhccCCCcccce
Confidence 3567899999966644 4788999999887643 33332 23335788999999999999999999999999999876
Q ss_pred CCceeec
Q psy15127 501 SPITRTL 507 (633)
Q Consensus 501 ~~~~~t~ 507 (633)
. ..+|.
T Consensus 525 l-~lqts 530 (699)
T KOG4367|consen 525 L-VLQTS 530 (699)
T ss_pred e-Eeeec
Confidence 6 34443
No 401
>cd05769 IgC_TCR_beta T cell receptor (TCR) beta chain constant immunoglobulin domain. IgC_TCR_beta: Constant domain of the beta chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group includes the variable domain of the beta chain. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The antigen binding site is formed by the variable domains of the alpha and beta chains, located at the N-terminus of each chain. Alpha/beta TCRs recognize antigens differently from gamma/delta TCRs.
Probab=94.94 E-value=0.12 Score=42.01 Aligned_cols=70 Identities=21% Similarity=0.287 Sum_probs=41.1
Q ss_pred CCceEEEEEEEeeecCC--eeEEEECCEEEEeccCCccceE-----EEccCceEEEcCCCCCC-CeEEEEEEEeCCce
Q psy15127 254 HPRVNRLSCFAEGSPLP--SVFWTQEGSQVLMFPGNAYGHL-----HVTQEGTLRIQGVQKED-AGFFVCSALSVAGS 323 (633)
Q Consensus 254 ~g~~~~l~C~~~g~p~~--~v~W~~~g~~~~~~~~~~~~~~-----~~~~~~~l~i~~~~~~d-~G~Y~C~a~n~~g~ 323 (633)
.++.++|.|.+.|.-+. .|.|.+||..+........... .....+.|.|..-...+ ...|+|.+.-....
T Consensus 17 ~~~~~tL~Cla~gFyP~~I~V~W~kng~~l~~g~~~~~~~~~~~~gTYs~~S~L~v~~~~w~~~~~~ytC~V~H~g~~ 94 (115)
T cd05769 17 NKRKATLVCLATGFYPDHVSLSWKVNGKEVTDGVATDPQALRENTSTYSISSRLRVSATEWFNPRNTFTCIVQFYGGT 94 (115)
T ss_pred cCCCcEEEEEEEeEeCCCcEEEEEECCEECCCCcccccceecCCCCeEEEEEEEEEChHHhccCCCeEEEEEEEeCCc
Confidence 34678999999996443 8899999987642110000000 11112246666544433 57999999765433
No 402
>cd07704 Ig2_Nectin-3-4_like Second immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3), nectin-4 (poliovirus receptor related protein 4) and similar proteins. Ig2_Nectin-3-4_like: domain similar to the second immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3) and nectin-4 (poliovirus receptor related protein 4). Nectin-3 and nectin-4 belong to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectin-2 and nectin-3 localize at Sertoli-spermatid junctions where they form heterophilic trans-interactions between the cells that are essential for the formation and maintenance of the junctions and for spermatid development. Nect
Probab=94.86 E-value=0.071 Score=41.49 Aligned_cols=71 Identities=18% Similarity=0.221 Sum_probs=43.8
Q ss_pred eEEecCCceEEE-EEEE-eeecCCeeEEEECCEEEEe--ccCCccceEEEccCceEEEcCCCCCCCeEEEEEEEeCC
Q psy15127 249 LLIWNHPRVNRL-SCFA-EGSPLPSVFWTQEGSQVLM--FPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVA 321 (633)
Q Consensus 249 ~~~~~~g~~~~l-~C~~-~g~p~~~v~W~~~g~~~~~--~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~ 321 (633)
...+.+|+.+.+ .|.+ .|.|.++|.|+.+...... ......+. ..-.+.|.+.....+|.-.++|.+....
T Consensus 10 ~~~~~~g~~~~vA~C~sa~gkPaa~IsW~~~~~G~~~~~~~~~~ngT--~TV~S~~~l~p~r~d~G~~vtC~V~H~a 84 (97)
T cd07704 10 SLLIDGGNGTTLAACCAAEGRPAADVTWETNVYGTSESHSQEHPNGT--TTVTSEYIWVPSRHANGHPLTCVVSHPA 84 (97)
T ss_pred eeEeecCcceeEEEEEccCCccCCEeEEeCCCCCccceeeecCCCCC--EEEEEEEEEEeCHHHCCcEEEEEEeCcc
Confidence 345667788888 9987 6788899999987432110 00011111 1122356666666677889999997764
No 403
>KOG4597|consensus
Probab=94.54 E-value=0.046 Score=53.93 Aligned_cols=85 Identities=22% Similarity=0.188 Sum_probs=66.6
Q ss_pred eEEecCCceEEEEEEEeeecCCeeEEEE---CCEEEEeccCCccceEEEccCceEEEcCCCCCCCeEEEEEEEeCCceeE
Q psy15127 249 LLIWNHPRVNRLSCFAEGSPLPSVFWTQ---EGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTT 325 (633)
Q Consensus 249 ~~~~~~g~~~~l~C~~~g~p~~~v~W~~---~g~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~ 325 (633)
...+..+++.+++|.+.|.+.+.|+|.+ |+..+.+.+.....+..+.....|.|-+....|+|.|+|.+.+..|-..
T Consensus 205 ~w~vg~wetcS~tCg~~G~q~r~V~c~qv~anr~~vv~~~nq~~e~p~vtstcql~ic~ewq~~a~w~tCs~rcg~g~~~ 284 (560)
T KOG4597|consen 205 EWFVGDWETCSSTCGVQGRQYRVVTCEQVFANRENVVMRPNQTVENPVVTSTCQLVICNEWQADAGWYTCSARCGAGFLR 284 (560)
T ss_pred hhhcccchhhcccccccCCcCceeeeehhhccccceeecCccccCCcceeeeeeEEEcchhhcCCCceeeccccccceee
Confidence 3445677899999999999999999975 5555554444444455555566899999999999999999999999888
Q ss_pred EEEEEEEE
Q psy15127 326 VRAFLQVR 333 (633)
Q Consensus 326 ~~~~l~v~ 333 (633)
+.+.+.+.
T Consensus 285 rdv~c~s~ 292 (560)
T KOG4597|consen 285 RDVPCSSV 292 (560)
T ss_pred ccceeeee
Confidence 88777665
No 404
>cd04985 IgC_CH1 CH1 domain (first constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH1: The first immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fab antigen-binding fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=94.53 E-value=0.15 Score=39.82 Aligned_cols=64 Identities=16% Similarity=0.281 Sum_probs=37.4
Q ss_pred CceEEEEEEEeeecC--CeeEEEECCEEEEeccCCccceEEEccCc------eEEEcCCCCCCCeEEEEEEEeCC
Q psy15127 255 PRVNRLSCFAEGSPL--PSVFWTQEGSQVLMFPGNAYGHLHVTQEG------TLRIQGVQKEDAGFFVCSALSVA 321 (633)
Q Consensus 255 g~~~~l~C~~~g~p~--~~v~W~~~g~~~~~~~~~~~~~~~~~~~~------~l~i~~~~~~d~G~Y~C~a~n~~ 321 (633)
.+.++|.|.+.|.-+ ..|+|.+||.. .. ........ ...++ .|.+..-.......|+|++....
T Consensus 16 ~~~~~L~C~a~gFyP~~i~vtW~k~g~~-~~-~~~~~~~~-~~~dgty~~~s~L~v~~~~w~~~~~ytC~V~H~~ 87 (95)
T cd04985 16 SDSVTLGCLATGFLPEPVTFTWNSGSNS-TS-GVKTYPAV-LQSGGLYTASSQLTVPASEWKGKESFYCKVEHPS 87 (95)
T ss_pred CCcEEEEEEEeeEECCCcEEEEeECCEE-CC-CcEECCCE-eCCCCCEEEEEEEEEeHHHcCCCCcEEEEEEeCC
Confidence 367899999999655 48899999986 21 10011111 11122 34444433333568999997653
No 405
>cd05721 IgV_CTLA-4 Immunoglobulin (Ig) domain of cytotoxic T lymphocyte-associated antigen 4 (CTLA-4). IgV_CTLA-4: domain similar to the variable(v)-type immunoglobulin (Ig) domain found in cytotoxic T lymphocyte-associated antigen 4 (CTLA-4). CTLA-4 is involved in the regulation of T cell response, acting as an inhibitor of intracellular signalling. CTLA-4 is similar to CD28, a T cell co-receptor protein that recognizes the B7 proteins (CD80 and CD86). CD28 binding of the B7 proteins occurs after the presentation of antigen to the T cell receptor (TCR) via the peptide-MHC complex on the surface of an antigen presenting cell (APC). CTLA-4 also binds the B7 molecules with a higher affinity than does CD28. The B7/CTLA-4 interaction generates inhibitory signals down-regulating the response, and may prevent T cell activation by weak TCR signals. CD28 and CTLA-4 then elicit opposing signals in the regulation of T cell responsiveness and homeostasis. T cell activation leads to increased
Probab=94.42 E-value=0.37 Score=38.61 Aligned_cols=19 Identities=11% Similarity=0.538 Sum_probs=17.7
Q ss_pred eEEEcCCCCCCCeEEEEEE
Q psy15127 299 TLRIQGVQKEDAGFFVCSA 317 (633)
Q Consensus 299 ~l~i~~~~~~d~G~Y~C~a 317 (633)
.|.+.+++.+|++.|.|..
T Consensus 75 ~L~l~~L~a~DTa~Y~Ca~ 93 (115)
T cd05721 75 NFTLQNLRANQTDIYFCKI 93 (115)
T ss_pred EEEEcCCCHHHCeEEEEEe
Confidence 7999999999999999975
No 406
>PHA03273 envelope glycoprotein C; Provisional
Probab=94.31 E-value=4.2 Score=40.83 Aligned_cols=92 Identities=15% Similarity=0.164 Sum_probs=59.3
Q ss_pred EEEcCCCC--CCeEEEEEEe--------------cCcCCeeeeCCCceEEEcCCeEEEEEEEecc-CC--CeEEEEeCCc
Q psy15127 50 LGARGALS--DDQWKLIAKE--------------ALIKPFPISEPSDATVLSGSVVEFVCRVGGD-PL--PTILWRRDDG 110 (633)
Q Consensus 50 L~i~~v~~--~G~Y~C~a~~--------------v~~~p~~~~~~~~~~~~~G~~~~L~C~~~~~-p~--p~i~W~~~~~ 110 (633)
|+|..++. +|.|+=...+ ...+|.+...+.. +.+|+...-.|.+... |. ..+.|++||.
T Consensus 200 LtI~sltaaTeGvYtWr~~~~n~t~~~~~~VtV~~yr~Psvsv~~~P--vL~Ge~y~A~C~aa~YYPp~Sv~~rWf~dg~ 277 (486)
T PHA03273 200 LTIKSVDWRTAGVYVWSLYAKNGTLVNSTSVTVSTYNAPLVDLSVHP--SLKGENYRAVCVVASYFPHSSVKLRWYKNAK 277 (486)
T ss_pred eEEEecchhhceEEEEEEecCCCceeeeeEEEEEEecCCcccccCCc--cccCCCceEEEEeeeecCCCceEEEEEeCCe
Confidence 99999998 9999866433 2344555444433 6799999999999764 32 2599999999
Q ss_pred cCCC-CC----eEEccc------ceEEEccCCC-CCCeEEEEEEE
Q psy15127 111 KMPT-GR----AKILDD------RSLQIENVGP-QDEGLYICDVE 143 (633)
Q Consensus 111 ~i~~-~~----~~~~~~------~~L~i~~v~~-~d~G~Y~C~~~ 143 (633)
++.. .. .....+ ++|++..... +.-=..+|.+.
T Consensus 278 ~V~~~~~~~~~~~~~~~gl~T~vStlt~~~~~~~~~PP~lrC~v~ 322 (486)
T PHA03273 278 EVDFTKYVTNASSVWVDGLITRISTLSIPVDPDEEYTPSLRCSIE 322 (486)
T ss_pred eccccccceeeEEEecCCceEEEEEEeccCcccCCCCCCceEEEE
Confidence 8862 11 111111 3455544332 33458899986
No 407
>PF06328 Lep_receptor_Ig: Ig-like C2-type domain; InterPro: IPR010457 This entry represents a ligand-binding domain that displays similarity to C2-set immunoglobulin domains (antibody constant domain 2) []. The two cysteine residues form a disulphide bridge.; PDB: 3L5H_A 1P9M_A 1I1R_A 2D9Q_B.
Probab=94.16 E-value=0.33 Score=37.25 Aligned_cols=66 Identities=24% Similarity=0.578 Sum_probs=47.9
Q ss_pred CCCceEEEcCCeEEEEEEEecc-----CCCeEEEEeCCccCCCCCeEEcccc--eEEEccCCCCCCeEEEEEE
Q psy15127 77 EPSDATVLSGSVVEFVCRVGGD-----PLPTILWRRDDGKMPTGRAKILDDR--SLQIENVGPQDEGLYICDV 142 (633)
Q Consensus 77 ~~~~~~~~~G~~~~L~C~~~~~-----p~p~i~W~~~~~~i~~~~~~~~~~~--~L~i~~v~~~d~G~Y~C~~ 142 (633)
.|+...+..|..++..|..... ....|.|+.++..++..++....++ .++|.+.....+-.|-|..
T Consensus 9 ~p~~pvv~lGS~vtasC~l~~~c~~~~~a~~I~Wkln~~~iP~~qy~~in~~~SsVT~~~~~~~~~~L~cC~l 81 (89)
T PF06328_consen 9 SPPSPVVSLGSNVTASCVLKQNCSHSVNASQIVWKLNGEKIPGSQYRVINDTVSSVTLPNLNPTGATLFCCKL 81 (89)
T ss_dssp ECSSSEEETTS-EEEEEEE-CCCHCT-STTCEEEECSSCESTCGCEEEESTTEEEEEESS--SSEEEEEEEEE
T ss_pred ecCCCEEeCCCCEEEEEEEECCCCCCcccceEEEEECCEECChhHcceeCCeEEEEEEccCCCCCceEEEEEE
Confidence 4566678999999999998522 3457999999999998887777664 5777777766667777774
No 408
>PF07354 Sp38: Zona-pellucida-binding protein (Sp38); InterPro: IPR010857 This family contains a number of zona-pellucida-binding proteins that seem to be restricted to mammals. These are sperm proteins that bind to the 90 kDa family of zona pellucida glycoproteins in a calcium-dependent manner []. These represent some of the specific molecules that mediate the first steps of gamete interaction, allowing fertilisation to occur [].; GO: 0007339 binding of sperm to zona pellucida, 0005576 extracellular region
Probab=93.95 E-value=0.096 Score=47.96 Aligned_cols=47 Identities=26% Similarity=0.454 Sum_probs=36.7
Q ss_pred CCCeEEEEeCCcc-CCCC-CeEEcccceEEEccCCCCCCeEEEEEEEeC
Q psy15127 99 PLPTILWRRDDGK-MPTG-RAKILDDRSLQIENVGPQDEGLYICDVENL 145 (633)
Q Consensus 99 p~p~i~W~~~~~~-i~~~-~~~~~~~~~L~i~~v~~~d~G~Y~C~~~n~ 145 (633)
..|.++|...++. +... +..+.+.+.|.+.+...+++|.|+|..+-.
T Consensus 11 iDP~y~W~GP~g~~l~gn~~~nIT~TG~L~~~~F~esmSG~YTCtLsYk 59 (271)
T PF07354_consen 11 IDPTYLWTGPNGKPLSGNSYVNITETGKLMFKNFQESMSGSYTCTLSYK 59 (271)
T ss_pred CCCceEEECCCCcccCCCCeEEEccCceEEeeccccccCCceEEEEEEE
Confidence 4678999996554 4443 445566789999999999999999998644
No 409
>PF09294 Interfer-bind: Interferon-alpha/beta receptor, fibronectin type III; InterPro: IPR015373 Members of this family adopt a secondary structure consisting of seven beta-strands arranged in an immunoglobulin-like beta-sandwich, in a Greek-key topology. They are required for binding to interferon-alpha []. ; PDB: 1A21_A 3LQM_B 3ELA_T 1AHW_C 2A2Q_T 1TFH_B 1FAK_T 1WSS_T 1W2K_T 2FIR_T ....
Probab=93.78 E-value=0.18 Score=40.53 Aligned_cols=68 Identities=29% Similarity=0.438 Sum_probs=43.8
Q ss_pred EeeCCeEEEEeCCCCCC---CCCC------cceeEEEEEEEEecCCCCeEEEEEeeeeceEEEecCCCCCeEEEEEEEE
Q psy15127 420 NTTRGSVTLGWGEPEPR---GGGV------APVIGYTVEYFSSDLQTGWVVAAHRITSTSITVSDLKPDTSYMFIVRAE 489 (633)
Q Consensus 420 ~~~~~~i~l~W~~~~~~---~~~~------~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~~~Y~~~v~a~ 489 (633)
......|.|.+.+|... ...+ .....|.|.|+..+.. ............++|.+|.|++.|.++|+|.
T Consensus 11 ~~~~~~l~V~i~~P~~~~~~~~~~~~l~~~~~~~~Y~v~~~~~~~~--~~~~~~~~~~~~~~l~~L~p~t~YCv~V~~~ 87 (106)
T PF09294_consen 11 SSCGGSLHVTIKPPMTPLRAGGKNSSLRDIYPSLSYNVSYWKNGSN--EKKKEIETKNSSVTLSDLKPGTNYCVSVQAF 87 (106)
T ss_dssp EEETTEEEEEEEESEEEEECSSSEEEHHHHHGG-EEEEEEEETTTS--CEEEEEESSSEEEEEES--TTSEEEEEEEEE
T ss_pred EECCCEEEEEEECCCcccccCCCCCcHHHhCCCeEEEEEEEeCCCc--cceEEEeecCCEEEEeCCCCCCCEEEEEEEE
Confidence 66788999999988611 0000 1135799999987654 1222233345667999999999999999993
No 410
>PHA02914 Immunoglobulin-like domain protein; Provisional
Probab=93.26 E-value=0.65 Score=45.09 Aligned_cols=119 Identities=17% Similarity=0.228 Sum_probs=73.2
Q ss_pred CceEEEcCCeEEEEEEEe--ccC-CCeEEEEeCCccCC------------------CCCeEE---------cccceEEEc
Q psy15127 79 SDATVLSGSVVEFVCRVG--GDP-LPTILWRRDDGKMP------------------TGRAKI---------LDDRSLQIE 128 (633)
Q Consensus 79 ~~~~~~~G~~~~L~C~~~--~~p-~p~i~W~~~~~~i~------------------~~~~~~---------~~~~~L~i~ 128 (633)
....+..|..+.|.|.++ |+. -..+.|+--|-++. +..+.+ +..++|+|.
T Consensus 272 ~~~~~~~g~~v~~~c~~s~~~~e~i~~~~w~~t~~~~~~~~g~~~~~~~v~~~~~~~~~~~i~~~~~~s~dlk~STLTIk 351 (500)
T PHA02914 272 DEVMLEVGKRVDIECFFSMCGNENISNAKWIDTGFEIGPLIGTVKSKDIVEGDFAEDDDFMISAHANYSDDLKNSTLTIK 351 (500)
T ss_pred ceeEeccCcEEEEEEEEeecCCcccccceEEecCCcccceeEEEEecceeecccccCCceEEEEecccccchhhceEEee
Confidence 345677799999999986 333 33589987665442 111111 113689999
Q ss_pred cCCCCCCeEEEEEEEeCCceEEEEEEEEEEeeccccccCCCceEEecCC-cEEEEEeCCCC-CCCCeEEEEECCEEec
Q psy15127 129 NVGPQDEGLYICDVENLVGSISLRASLTVHLLRDDFRAEPKDTRVASGE-TALLECGPPKG-QPEPTLHWKKNGQFID 204 (633)
Q Consensus 129 ~v~~~d~G~Y~C~~~n~~g~~s~~~~l~V~~~~p~~~~~~~~~~~~~g~-~~~l~C~~~~~-~p~~~i~W~~~~~~~~ 204 (633)
+++.+.+|-|.|.|..+.-+....-=|.|... ..+ ....+|. ...+.|-+.+. ..++.+.|..+|....
T Consensus 352 ka~I~N~GCY~~~a~~g~~~~ec~~Cl~V~d~-V~f------~W~~e~~n~T~V~Cyv~sy~~kp~si~wkvnGV~~~ 422 (500)
T PHA02914 352 KAHINNAGCYEAQAFMGKFKEECRHCFKVADH-VFF------KWNTEGDNETKVACYAAQYDMQPFSILWKSNGVSFG 422 (500)
T ss_pred eEEEEcCCceEEEEecCcchhhhhhheEeccE-EEE------EEEeccCceEEEEEEEEecccCCceeEEEEccEEec
Confidence 99999999999999865333333322333321 111 1223433 44568986555 3455799999887654
No 411
>COG3401 Fibronectin type 3 domain-containing protein [General function prediction only]
Probab=91.59 E-value=7.3 Score=37.53 Aligned_cols=161 Identities=14% Similarity=-0.016 Sum_probs=87.0
Q ss_pred EEEEeeCCeEEEEeCCCCCCCCCCcceeEEEEEEEEecCCCCeEEEEEeeeeceEEEecCCCCCeEEEEEEEE-eccccC
Q psy15127 417 VILNTTRGSVTLGWGEPEPRGGGVAPVIGYTVEYFSSDLQTGWVVAAHRITSTSITVSDLKPDTSYMFIVRAE-NSHGLG 495 (633)
Q Consensus 417 ~~~~~~~~~i~l~W~~~~~~~~~~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~~~Y~~~v~a~-n~~G~g 495 (633)
+......+.+.|+|..+... ..|.++-...+. ......... ..+.+.-.--.-+..|.+.+.++ |..+.+
T Consensus 172 ~~~~d~~~~i~ls~dg~~~~-------~yy~IY~~~~g~-e~~~~ia~t-~~n~y~d~~eglga~~~y~VTtVd~~~~es 242 (343)
T COG3401 172 RVSFDLGNNIELSEDGSEAE-------DYYRIYASDSGN-EEYGFIAQT-TENSYYDVKEGLGAVEYYKVTTVDNTGFES 242 (343)
T ss_pred eeecCCCCcceeeccCcccc-------ceEEEeccCCcc-ccccceeec-cccchhhhhhccCceeEEEEEEEcCCccee
Confidence 34455678899999987632 267776554432 222222222 22333222222366777777777 466666
Q ss_pred CCCCCCCceeecCCCCCCCcchHHHHHHHhCCceEEeeeeeecccceEEEEEEEecCCCcccccchhhhhcceeEEEEEE
Q psy15127 496 IPSPVSPITRTLGLNSLVPQHLLDEARARLGTKVVNLRELIPTASTAVRITWEVSWGSVPQHLLDEARARLGTKVVNLRE 575 (633)
Q Consensus 496 ~~s~~~~~~~t~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~si~v~W~~p~~~~p~~~~~~~~~i~~y~~i~~~~ 575 (633)
..+.....-.+.+.++.+.... .......+.|.|+. .+....+..+ .-++..
T Consensus 243 ~lp~~~t~~~~~g~~e~pt~~g------------------~t~~~s~i~V~~E~---------~~~~~av~yt-vyr~~~ 294 (343)
T COG3401 243 DLPNEPTVGETGGRYEVPTIPG------------------ETTEASFIGVAAEQ---------NQLRQAVTYT-VYRVED 294 (343)
T ss_pred ccCCccccccccCCcccccCCC------------------ceeeeeeeeEEecc---------cccceeeEEe-eeeccC
Confidence 6665553444544432222111 11124455788882 1122233333 223322
Q ss_pred cCCCcccceeeeeeccceeEeecCCccceEEeeccccceeEEEEEeccccccccc
Q psy15127 576 LIPTASTAVRITWEKYNMATVMNAATTTSYTVTHLRKFTKYEFFLVPFFKTVEGA 630 (633)
Q Consensus 576 ~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~i~~L~~~t~Y~~~v~a~n~~g~g~ 630 (633)
.. .+.......+.+....+..+..|.+.|.|.+.+|-..
T Consensus 295 --g~--------------~~~~f~it~~d~~d~~~ltg~~~~y~v~~v~~~gls~ 333 (343)
T COG3401 295 --GT--------------PTKFFTITETDGQDNDMLTGVEYRYEVVAVDKAGLSS 333 (343)
T ss_pred --CC--------------cceeeeeeeccccchhhccccceeEEEEEeccccccc
Confidence 11 1233344578889999999999999999999888654
No 412
>PF07354 Sp38: Zona-pellucida-binding protein (Sp38); InterPro: IPR010857 This family contains a number of zona-pellucida-binding proteins that seem to be restricted to mammals. These are sperm proteins that bind to the 90 kDa family of zona pellucida glycoproteins in a calcium-dependent manner []. These represent some of the specific molecules that mediate the first steps of gamete interaction, allowing fertilisation to occur [].; GO: 0007339 binding of sperm to zona pellucida, 0005576 extracellular region
Probab=91.51 E-value=0.27 Score=45.11 Aligned_cols=50 Identities=20% Similarity=0.408 Sum_probs=39.1
Q ss_pred cCCeeEEEECCEEEEeccCCccceEEEccCceEEEcCCCCCCCeEEEEEEEeCC
Q psy15127 268 PLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVA 321 (633)
Q Consensus 268 p~~~v~W~~~g~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~ 321 (633)
..|.+.|..++..+. ....++.+...|.|.+.+..+.++|.|+|..+-..
T Consensus 11 iDP~y~W~GP~g~~l----~gn~~~nIT~TG~L~~~~F~esmSG~YTCtLsYk~ 60 (271)
T PF07354_consen 11 IDPTYLWTGPNGKPL----SGNSYVNITETGKLMFKNFQESMSGSYTCTLSYKP 60 (271)
T ss_pred CCCceEEECCCCccc----CCCCeEEEccCceEEeeccccccCCceEEEEEEEe
Confidence 357899997654432 24467788899999999999999999999986543
No 413
>PF05790 C2-set: Immunoglobulin C2-set domain; InterPro: IPR008424 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents C2-set domains, which are Ig-like domains resembling the antibody constant domain. C2-set domains are found primarily in the mammalian T-cell surface antigens CD2 (Cluster of Differentiation 2), CD4 and CD80, as well as in vascular (VCAM) and intercellular (ICAM) cell adhesion molecules. CD2 mediates T-cell adhesion via its ectodomain, and signal transduction utilising its 117-amino acid cytoplasmic tail []. CD2 displays structural and functional similarities with African swine fever virus (ASFV) LMW8-DR, a protein that is involved in cell-cell adhesion and immune response modulation, suggesting a possible role in the pathogenesis of ASFV infection []. CD4 is the primary receptor for HIV-1. CD4 has four immunoglobulin-like domains in its extracellular region that share the same structure, but can differ in sequence. Certain extracellular domains may be involved in dimerisation [].; GO: 0007155 cell adhesion, 0016021 integral to membrane; PDB: 1CID_A 1CDU_A 1WIQ_B 2NY4_B 2NY2_B 1WIP_B 1WIO_A 3S4S_G 1CDY_A 3S5L_G ....
Probab=91.42 E-value=3.1 Score=31.13 Aligned_cols=52 Identities=13% Similarity=0.275 Sum_probs=33.1
Q ss_pred CCeEEEEeCCccCCCCCeEEcccceEEEccCCCCCCeEEEEEE-EeCCceEEEEEEEEE
Q psy15127 100 LPTILWRRDDGKMPTGRAKILDDRSLQIENVGPQDEGLYICDV-ENLVGSISLRASLTV 157 (633)
Q Consensus 100 ~p~i~W~~~~~~i~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~-~n~~g~~s~~~~l~V 157 (633)
.+.+.|+-.+... ......+........|+|.++|.| .+..-.......|.|
T Consensus 26 ~~~~~l~~~~~k~------~~~~~~~~~~~~~~~d~G~w~C~a~~~~~k~~~s~~~i~v 78 (80)
T PF05790_consen 26 KPSLFLENPGKKS------LETKKLVSTFTPTTEDSGTWVCTASDNEPKERESKIEILV 78 (80)
T ss_dssp CEEEEEECSSCEE------EEESSEEEEESBTCGGSEEEEEEEEECTTEEEEEEEEEEE
T ss_pred ChhheeeccCccc------cccceEEEEecCCCCCCEEEEEEEcCCceEEEEEEEEEEc
Confidence 4456776554432 233456778888899999999999 444444444455444
No 414
>cd07689 Ig2_VCAM-1 Second immunoglobulin (Ig)-like domain of vascular endothelial cell adhesion molecule-1 (VCAM-1, CD106) and intercellular cell adhesion molecule-1 (ICAM-1, CD54) and similar proteins. Ig2_ VCAM-1_like: domain similar to the second immunoglobulin (Ig)-like domain of vascular endothelial cell adhesion molecule-1 (VCAM-1, CD106). During the inflammation process, these molecules recruit leukocytes onto the vascular endothelium before extravasation to the injured tissues. The interaction of VCAM-1 binding to the beta1 integrin very late antigen (VLA-4) expressed by lymphocytes and monocytes mediates the adhesion of leucocytes to blood vessel walls, and regulates migration across the endothelium. During metastasis, some circulating cancer cells extravasate to a secondary site by a similar process. VCAM-1 may be involved in organ targeted tumor metastasis and may also act as host receptors for viruses and parasites. VCAM-1 contains seven Ig domains.
Probab=90.69 E-value=1.2 Score=34.56 Aligned_cols=69 Identities=13% Similarity=0.074 Sum_probs=38.6
Q ss_pred ecCCceEEEEEEEee-ecC--CeeEEEECCEEEEeccCCcc-ceEE-EccCceEEEcCCCCCCCe-EEEEEEEeCC
Q psy15127 252 WNHPRVNRLSCFAEG-SPL--PSVFWTQEGSQVLMFPGNAY-GHLH-VTQEGTLRIQGVQKEDAG-FFVCSALSVA 321 (633)
Q Consensus 252 ~~~g~~~~l~C~~~g-~p~--~~v~W~~~g~~~~~~~~~~~-~~~~-~~~~~~l~i~~~~~~d~G-~Y~C~a~n~~ 321 (633)
+..|..+++.|.+.+ .|. ..+.|++....+..-.-... .... ......+++.-. .+|.| .|+|.|.-..
T Consensus 12 l~~G~~vtv~C~v~~v~P~~~l~v~LlkG~~~l~~~~f~~~~~~ks~~~~~~~vtftpt-reD~g~~fsC~A~L~l 86 (99)
T cd07689 12 LEEGKPVTVKCEVPDVYPFDRLEIELLKGETLLPSKSFLEDMDKKSLETKSLEVTFTPT-IEDIGKVLVCRAKLHI 86 (99)
T ss_pred ccCCceEEEEEEecCcccCCceEEEEecCcceecccccccccccCCCCCcceeEEEecc-hhhCCcEEEEEEEEee
Confidence 357899999999965 444 47899986655431100000 0000 001124555554 55555 9999996443
No 415
>PF11465 Receptor_2B4: Natural killer cell receptor 2B4; InterPro: IPR024303 2B4 is a transmembrane receptor which is expressed primarily on natural killer (NK) cells. It plays a role in activating NK-mediated cytotoxicity through its interaction with CD48 on target cells in a subset of CD8 T cells []. The structure of 2B4 consists of an immunoglobulin variable domain fold and contains two beta-sheets. One of the beta-sheets, the six-stranded sheet, contains structural features that may have a role in ligand recognition and receptor function []. This entry represents the 2B4 immunoglobulin domain.; GO: 0005488 binding; PDB: 2PTU_D 2PTT_B 1Z2K_A.
Probab=90.38 E-value=1.1 Score=35.11 Aligned_cols=38 Identities=32% Similarity=0.538 Sum_probs=30.0
Q ss_pred ccceEEEccCCCCCCeEEEEEEEeCCceE-EEEEEEEEE
Q psy15127 121 DDRSLQIENVGPQDEGLYICDVENLVGSI-SLRASLTVH 158 (633)
Q Consensus 121 ~~~~L~i~~v~~~d~G~Y~C~~~n~~g~~-s~~~~l~V~ 158 (633)
.+-+|.|..++..|+|.|.-++.+..|.. ...+.|.|.
T Consensus 69 enlaLlIkaAq~qDSG~Y~LEvT~~sG~V~~~~FqVsVF 107 (108)
T PF11465_consen 69 ENLALLIKAAQPQDSGLYCLEVTNESGKVCTKNFQVSVF 107 (108)
T ss_dssp TTTEEEESS-SGGG-EEEEEEEEETTSCEEEEEEEEEEE
T ss_pred cCceEEEeecCcccCceEEEEEEcCCCcEEEEEEEEEee
Confidence 35689999999999999999999998884 566666664
No 416
>PHA03042 CD47-like protein; Provisional
Probab=90.03 E-value=2 Score=39.81 Aligned_cols=69 Identities=13% Similarity=0.166 Sum_probs=45.7
Q ss_pred ceEEEEEEEeee-----cCCeeEEEECCEEEEeccCCccceEEEccCceEEEcCCCCCCCeEEEEEEEeCCceeEEEEEE
Q psy15127 256 RVNRLSCFAEGS-----PLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRAFL 330 (633)
Q Consensus 256 ~~~~l~C~~~g~-----p~~~v~W~~~g~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l 330 (633)
+++.+.|.+..- ....+.|..++..+....+. ...+|.+.. ...-.|.|+|+|.+..........+
T Consensus 32 ~TV~IpC~v~n~~~~ni~~~~V~Wkf~~~~If~~n~t--------n~aSL~~~f-~~~l~GNYTCEv~~l~n~gk~~IeL 102 (286)
T PHA03042 32 KTIVIVCNLNLLIYYNISNIHINWKFNNKVIFKKNNT--------NTSSLKFNF-SKNLSGNYTCEAINKFNKIKNTIEL 102 (286)
T ss_pred ceEEEEeecCChhhcCccceEEEEEeCCeeEEEecCC--------cceEEEEec-cccCCCceeEEEeecccCccEEEEE
Confidence 789999998653 33579999999987644332 113455543 3334699999998876555555555
Q ss_pred EEE
Q psy15127 331 QVR 333 (633)
Q Consensus 331 ~v~ 333 (633)
+..
T Consensus 103 k~~ 105 (286)
T PHA03042 103 QYV 105 (286)
T ss_pred EEE
Confidence 544
No 417
>COG4733 Phage-related protein, tail component [Function unknown]
Probab=89.84 E-value=1.3 Score=47.73 Aligned_cols=125 Identities=10% Similarity=0.012 Sum_probs=67.6
Q ss_pred eeceEEEecCCCCCeEEEEEEEEeccccCCCCCCCCceeecCCCCCCCcchHHHHHHHhCCceEEeeeeeecccceEEEE
Q psy15127 467 TSTSITVSDLKPDTSYMFIVRAENSHGLGIPSPVSPITRTLGLNSLVPQHLLDEARARLGTKVVNLRELIPTASTAVRIT 546 (633)
Q Consensus 467 ~~~~~~i~~L~p~~~Y~~~v~a~n~~G~g~~s~~~~~~~t~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~si~v~ 546 (633)
....+.+.+|.+ -.|.++|+|.|..|....-..+..+ ....+-.+||... . + ....+ --.+.+.
T Consensus 658 ~~~~~~~~gi~~-GqY~i~VrAiN~~g~~~~~a~s~~f-~i~g~~~Ppp~~~-t-----~-------~a~~i-t~~~~l~ 721 (952)
T COG4733 658 SAAGFDVEGIPA-GQYAIRVRAINVFEPNSPDATAYEF-ALNGKKVPPPKAM-I-----Y-------DAVII-TLVIRLV 721 (952)
T ss_pred cccceeecCcCc-cceEEEEEEeeccCCCCCCcceeEE-EecCCCCCCCccc-c-----c-------ceEEE-EeeeeEE
Confidence 467799999988 6899999999999986443322112 2222222222110 0 0 11111 1345566
Q ss_pred EEEecCCCcccccchhhhhcc-eeEEEEEEcCCCcccceeeeeeccceeEeecCCccceEEe--eccccceeEEEEEecc
Q psy15127 547 WEVSWGSVPQHLLDEARARLG-TKVVNLRELIPTASTAVRITWEKYNMATVMNAATTTSYTV--THLRKFTKYEFFLVPF 623 (633)
Q Consensus 547 W~~p~~~~p~~~~~~~~~i~~-y~~i~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~i--~~L~~~t~Y~~~v~a~ 623 (633)
|--| -+.+.. |..+++....+.+. .....++.....+ .+|+++..|.|++++.
T Consensus 722 v~dP-----------t~~~d~~~sei~~s~~~d~~~-------------~Ar~LG~~~~~~~~~~~i~~g~~~~F~~R~V 777 (952)
T COG4733 722 VGDP-----------TGAVDITSTEIRSAVIADGNF-------------QARSLGNLNYPGLFSVGIQAGLTFWFRNRNV 777 (952)
T ss_pred EecC-----------CcceEEeeeeeeeeccccchh-------------HHhhhhccccccccccCcCCCceEEEEeeec
Confidence 6622 122222 22444444443331 0111222222222 5899999999999999
Q ss_pred cccccccc
Q psy15127 624 FKTVEGAR 631 (633)
Q Consensus 624 n~~g~g~~ 631 (633)
|..|-..+
T Consensus 778 n~vG~~~~ 785 (952)
T COG4733 778 DLVGNNDK 785 (952)
T ss_pred cccccccc
Confidence 99887654
No 418
>PF11465 Receptor_2B4: Natural killer cell receptor 2B4; InterPro: IPR024303 2B4 is a transmembrane receptor which is expressed primarily on natural killer (NK) cells. It plays a role in activating NK-mediated cytotoxicity through its interaction with CD48 on target cells in a subset of CD8 T cells []. The structure of 2B4 consists of an immunoglobulin variable domain fold and contains two beta-sheets. One of the beta-sheets, the six-stranded sheet, contains structural features that may have a role in ligand recognition and receptor function []. This entry represents the 2B4 immunoglobulin domain.; GO: 0005488 binding; PDB: 2PTU_D 2PTT_B 1Z2K_A.
Probab=89.53 E-value=3.6 Score=32.26 Aligned_cols=36 Identities=19% Similarity=0.369 Sum_probs=27.9
Q ss_pred cceEEEc-cCceEEEcCCCCCCCeEEEEEEEeCCcee
Q psy15127 289 YGHLHVT-QEGTLRIQGVQKEDAGFFVCSALSVAGST 324 (633)
Q Consensus 289 ~~~~~~~-~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~ 324 (633)
..++... .+-+|.|+.++..|+|.|.-++++..|..
T Consensus 61 n~r~~F~~enlaLlIkaAq~qDSG~Y~LEvT~~sG~V 97 (108)
T PF11465_consen 61 NNRFNFTSENLALLIKAAQPQDSGLYCLEVTNESGKV 97 (108)
T ss_dssp HHHEEEETTTTEEEESS-SGGG-EEEEEEEEETTSCE
T ss_pred cceEeeeccCceEEEeecCcccCceEEEEEEcCCCcE
Confidence 3455554 45589999999999999999999999887
No 419
>KOG3632|consensus
Probab=89.22 E-value=0.17 Score=54.72 Aligned_cols=158 Identities=20% Similarity=0.153 Sum_probs=94.6
Q ss_pred CCCcEEEEeeCCeEEEEeCCCCCCCCCCcceeEEEEEEEEecCCCCeEEEEEeeeeceEEEecCC-CCCeEEEEEEEEec
Q psy15127 413 PAAPVILNTTRGSVTLGWGEPEPRGGGVAPVIGYTVEYFSSDLQTGWVVAAHRITSTSITVSDLK-PDTSYMFIVRAENS 491 (633)
Q Consensus 413 p~~~~~~~~~~~~i~l~W~~~~~~~~~~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~i~~L~-p~~~Y~~~v~a~n~ 491 (633)
|...........++.|.|++|...- .-++...|.+....+-... ....+.+...+..|. -...|.+.+.+..+
T Consensus 581 pr~~~~vkqla~sv~vawepps~pP-~~~~~~~~~~~v~~elrq~-----l~~gs~tka~~E~ld~~a~s~~isvq~ltS 654 (1335)
T KOG3632|consen 581 PRTGAAVKQLAGSVHVAWEPPSSPP-FTAPARMIGATVLMELRQT-----LYAGSLTKAMQESLDNSAHSGYISVQRLTS 654 (1335)
T ss_pred ccchhhhhhhccceeeeccCCCCCC-ccccceeeeeecchhhhhh-----cccccchHHHHhhccccCCceeeehhhhhc
Confidence 3444445556789999999976431 1244555555322111000 011122233333333 45678888889999
Q ss_pred cccCCCCCCCCceeecCCCCCCCcchHHHHHHHhCCceEEeeeeeecccceEEEEEEEecCCCcccccchhhhhcceeEE
Q psy15127 492 HGLGIPSPVSPITRTLGLNSLVPQHLLDEARARLGTKVVNLRELIPTASTAVRITWEVSWGSVPQHLLDEARARLGTKVV 571 (633)
Q Consensus 492 ~G~g~~s~~~~~~~t~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~si~v~W~~p~~~~p~~~~~~~~~i~~y~~i 571 (633)
.|........ ..+.+..+..|.++ ++.+++.++..++|-+ .+ . .|-.+
T Consensus 655 rGsqd~lrc~--Llvgg~a~vvpsql----------------rv~n~tqtSa~itwvp---------~n--s---n~~Hv 702 (1335)
T KOG3632|consen 655 RGSQDQLRCI--LLVGGAAPVVPSQL----------------RVWNATQTSAMITWVP---------FN--S---NFLHV 702 (1335)
T ss_pred cCCCCcceee--Eeccccccccchhh----------------hhhhhhchhhheeeee---------cC--C---Cccee
Confidence 9988766554 44566678788777 8999999999999993 12 1 12133
Q ss_pred EEEEcCCCcccceeeeeeccceeEeecCCccceEEeeccccceeEEEEEeccc
Q psy15127 572 NLRELIPTASTAVRITWEKYNMATVMNAATTTSYTVTHLRKFTKYEFFLVPFF 624 (633)
Q Consensus 572 ~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~i~~L~~~t~Y~~~v~a~n 624 (633)
.|-....-. . .......|+|.+|.|++.|.++|-|.-
T Consensus 703 iyln~eE~~--------------p--s~a~~y~ytf~~lrpgt~y~a~vea~~ 739 (1335)
T KOG3632|consen 703 IYLNAEEPR--------------P--SVAEMYNYTFMRLRPGTDYWASVEAAL 739 (1335)
T ss_pred eecCCccCC--------------C--chhhhhHHHHhccCCCCccceeccccc
Confidence 332221111 1 223456799999999999999997653
No 420
>PF10179 DUF2369: Uncharacterised conserved protein (DUF2369); InterPro: IPR019326 This is a proline-rich region of a group of proteins found from plants to fungi. The function is largely unknown, although the entry contains Fibronectin type-III domain-containing protein C4orf31, which promotes matrix assembly and cell adhesiveness.
Probab=88.57 E-value=16 Score=35.14 Aligned_cols=29 Identities=41% Similarity=0.488 Sum_probs=24.6
Q ss_pred eeceEEEecCCCCCeEEEEEEEEec-cccC
Q psy15127 467 TSTSITVSDLKPDTSYMFIVRAENS-HGLG 495 (633)
Q Consensus 467 ~~~~~~i~~L~p~~~Y~~~v~a~n~-~G~g 495 (633)
..+.++|.+|.|++.|.|.|-|+|. -|.+
T Consensus 13 ~~t~~t~~~L~p~t~YyfdVF~vn~~~n~s 42 (300)
T PF10179_consen 13 QKTNQTLSGLKPDTTYYFDVFVVNQLTNNS 42 (300)
T ss_pred CCceEEeccCCCCCeEEEEEEEEECCCCce
Confidence 4578999999999999999999998 4443
No 421
>PHA02982 hypothetical protein; Provisional
Probab=87.89 E-value=2.4 Score=37.46 Aligned_cols=30 Identities=20% Similarity=0.463 Sum_probs=25.4
Q ss_pred cCceEEEcCCCCCCCeEEEEEEEeCCceeE
Q psy15127 296 QEGTLRIQGVQKEDAGFFVCSALSVAGSTT 325 (633)
Q Consensus 296 ~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~ 325 (633)
..++|+|.++..+..|=|+|.+....+..+
T Consensus 98 ~~STLTIkk~~i~N~GCYtc~~ks~~~k~E 127 (251)
T PHA02982 98 NSSTFTMKKPDPQNLGCFTCEAKDAEGKEE 127 (251)
T ss_pred cceeEEeccCCcccCCceEEEEecCCCchh
Confidence 456899999999999999999988776553
No 422
>PF07495 Y_Y_Y: Y_Y_Y domain; InterPro: IPR011123 This region is mostly found at the end of the beta propellers (IPR011110 from INTERPRO) in a family of two component regulators. However they are also found tandemly repeated in Q891H4 from SWISSPROT without other signal conduction domains being present. It is named after the conserved tyrosines found in the alignment. The exact function is not known.; PDB: 3V9F_D 3VA6_B 3OTT_B 4A2M_D 4A2L_B.
Probab=87.58 E-value=2 Score=30.65 Aligned_cols=46 Identities=24% Similarity=0.431 Sum_probs=31.0
Q ss_pred EEEEEEecCCCCeEEEEEeeeec-eEEEecCCCCCeEEEEEEEEeccccCC
Q psy15127 447 TVEYFSSDLQTGWVVAAHRITST-SITVSDLKPDTSYMFIVRAENSHGLGI 496 (633)
Q Consensus 447 ~v~~~~~~~~~~~~~~~~~~~~~-~~~i~~L~p~~~Y~~~v~a~n~~G~g~ 496 (633)
..+|+..+...+|... .... .+.+.+|.|| .|.|+|+|.+..|.-.
T Consensus 9 ~Y~Y~l~g~d~~W~~~---~~~~~~~~~~~L~~G-~Y~l~V~a~~~~~~~~ 55 (66)
T PF07495_consen 9 RYRYRLEGFDDEWITL---GSYSNSISYTNLPPG-KYTLEVRAKDNNGKWS 55 (66)
T ss_dssp EEEEEEETTESSEEEE---SSTS-EEEEES--SE-EEEEEEEEEETTS-B-
T ss_pred EEEEEEECCCCeEEEC---CCCcEEEEEEeCCCE-EEEEEEEEECCCCCcC
Confidence 3455556666788743 2333 8999999888 7999999999988764
No 423
>PHA02914 Immunoglobulin-like domain protein; Provisional
Probab=87.41 E-value=32 Score=34.04 Aligned_cols=77 Identities=14% Similarity=0.209 Sum_probs=47.7
Q ss_pred eEEecCCceEEEEEEEe--eecC-CeeEEEECCEEEE------------eccCCccceEEEc---------cCceEEEcC
Q psy15127 249 LLIWNHPRVNRLSCFAE--GSPL-PSVFWTQEGSQVL------------MFPGNAYGHLHVT---------QEGTLRIQG 304 (633)
Q Consensus 249 ~~~~~~g~~~~l~C~~~--g~p~-~~v~W~~~g~~~~------------~~~~~~~~~~~~~---------~~~~l~i~~ 304 (633)
.+.++.|..+.|.|... |+.. ....|..-|-++. ...-.....+.+. ..++|+|..
T Consensus 273 ~~~~~~g~~v~~~c~~s~~~~e~i~~~~w~~t~~~~~~~~g~~~~~~~v~~~~~~~~~~~i~~~~~~s~dlk~STLTIkk 352 (500)
T PHA02914 273 EVMLEVGKRVDIECFFSMCGNENISNAKWIDTGFEIGPLIGTVKSKDIVEGDFAEDDDFMISAHANYSDDLKNSTLTIKK 352 (500)
T ss_pred eeEeccCcEEEEEEEEeecCCcccccceEEecCCcccceeEEEEecceeecccccCCceEEEEecccccchhhceEEeee
Confidence 34456688999999875 4444 4788987553321 0000111111111 245899999
Q ss_pred CCCCCCeEEEEEEEeCCceeE
Q psy15127 305 VQKEDAGFFVCSALSVAGSTT 325 (633)
Q Consensus 305 ~~~~d~G~Y~C~a~n~~g~~~ 325 (633)
+..+..|=|+|+|....-..+
T Consensus 353 a~I~N~GCY~~~a~~g~~~~e 373 (500)
T PHA02914 353 AHINNAGCYEAQAFMGKFKEE 373 (500)
T ss_pred EEEEcCCceEEEEecCcchhh
Confidence 999999999999977644333
No 424
>PF07495 Y_Y_Y: Y_Y_Y domain; InterPro: IPR011123 This region is mostly found at the end of the beta propellers (IPR011110 from INTERPRO) in a family of two component regulators. However they are also found tandemly repeated in Q891H4 from SWISSPROT without other signal conduction domains being present. It is named after the conserved tyrosines found in the alignment. The exact function is not known.; PDB: 3V9F_D 3VA6_B 3OTT_B 4A2M_D 4A2L_B.
Probab=87.01 E-value=1.6 Score=31.15 Aligned_cols=26 Identities=19% Similarity=0.009 Sum_probs=20.2
Q ss_pred eEEeeccccceeEEEEEeccccccccc
Q psy15127 604 SYTVTHLRKFTKYEFFLVPFFKTVEGA 630 (633)
Q Consensus 604 ~~~i~~L~~~t~Y~~~v~a~n~~g~g~ 630 (633)
.+.+++|.|| .|.|.|+|.+..|.-.
T Consensus 30 ~~~~~~L~~G-~Y~l~V~a~~~~~~~~ 55 (66)
T PF07495_consen 30 SISYTNLPPG-KYTLEVRAKDNNGKWS 55 (66)
T ss_dssp EEEEES--SE-EEEEEEEEEETTS-B-
T ss_pred EEEEEeCCCE-EEEEEEEEECCCCCcC
Confidence 8999999999 8999999999877654
No 425
>PF09067 EpoR_lig-bind: Erythropoietin receptor, ligand binding; InterPro: IPR015152 Members of this entry include the growth hormone and erythropoietin receptors. The latter interacts with erythropoietin (EPO), with subsequent initiation of the downstream chain of events associated with binding of EPO to the receptor, including EPO-induced erythroblast proliferation and differentiation through induction of the JAK2/STAT5 signalling cascade. The domain adopts a secondary structure composed of a short amino-terminal helix, followed by two beta-sandwich regions []. ; PDB: 3NCB_B 3NCF_B 3NCE_B 3N0P_B 3NCC_B 1BP3_B 3N06_B 3MZG_B 3D48_R 1F6F_C ....
Probab=85.51 E-value=5.5 Score=31.60 Aligned_cols=81 Identities=20% Similarity=0.200 Sum_probs=55.8
Q ss_pred CCCCCCCcEEEEeeCCeEEEEeCCCCCCCCCCcceeEEEEEEEEecCCCCeEEEEEee--eece-----EEEe--cCCCC
Q psy15127 409 FPGPPAAPVILNTTRGSVTLGWGEPEPRGGGVAPVIGYTVEYFSSDLQTGWVVAAHRI--TSTS-----ITVS--DLKPD 479 (633)
Q Consensus 409 ~p~~p~~~~~~~~~~~~i~l~W~~~~~~~~~~~~i~~Y~v~~~~~~~~~~~~~~~~~~--~~~~-----~~i~--~L~p~ 479 (633)
+|+.|..+.+.......++--|++.... +.+ ..|.+.|...+ ..|..-.... ...+ ..|. +..-.
T Consensus 7 ~p~~P~~~~C~S~~~etftC~W~~g~~~---~l~-~~y~L~Y~~~~--~~~~eCp~~~~~~~ns~~~~~C~F~~~~t~lf 80 (104)
T PF09067_consen 7 PPEKPENLKCFSREMETFTCFWEPGSEG---NLP-TNYTLFYKKEG--EEWKECPDYSTSGPNSTVRHICYFPKSDTSLF 80 (104)
T ss_dssp HCCCCEEEEEEBSSSS-EEEEEEEESSS---TST-CEEEEEEEETT--SEEEEESESSTTETTEEEEEEEEE-CCGCSSS
T ss_pred CCCCCccCccCCCCCCcEEEEeeCCCCC---CCC-CcEEEEEEeCC--CCCccCCCeEecCCCCceeEEEEcCCCCeEEE
Confidence 3556777788888889999999998854 333 33999999875 4444322211 1123 5554 88999
Q ss_pred CeEEEEEEEEeccccC
Q psy15127 480 TSYMFIVRAENSHGLG 495 (633)
Q Consensus 480 ~~Y~~~v~a~n~~G~g 495 (633)
+.|.++|.|.|..|.-
T Consensus 81 ~~y~i~V~a~~~~~~~ 96 (104)
T PF09067_consen 81 VPYCIQVEATNALGSI 96 (104)
T ss_dssp SEEEEEEEEEETTEEE
T ss_pred EEEEEEEEeccCCCcE
Confidence 9999999999999853
No 426
>KOG1026|consensus
Probab=85.19 E-value=1 Score=48.65 Aligned_cols=247 Identities=16% Similarity=0.125 Sum_probs=130.3
Q ss_pred ceEEEcCCeEEEEEEEeccCCCeEEEEeCCccCCCCCeEEcc-----cceEEEccCCCCCCeEEEEEEEeCCceEEEEEE
Q psy15127 80 DATVLSGSVVEFVCRVGGDPLPTILWRRDDGKMPTGRAKILD-----DRSLQIENVGPQDEGLYICDVENLVGSISLRAS 154 (633)
Q Consensus 80 ~~~~~~G~~~~L~C~~~~~p~p~i~W~~~~~~i~~~~~~~~~-----~~~L~i~~v~~~d~G~Y~C~~~n~~g~~s~~~~ 154 (633)
++....++...+.|.+.+.+...+.|.++......+...... ...|...+....+.|.+.|...+..-.......
T Consensus 61 n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~l 140 (774)
T KOG1026|consen 61 NITEIFIENGQLLCIVSGNDVENYTGLRNLTIVVSGLRFSQPRAFHYNSRLRRDNLSTNDTGVLGSLSTNGFETLSLTEL 140 (774)
T ss_pred hHHHHHHhhhhhcccccCCCcccchhhhccCcccchhheecccceeccccccccccchhhhccccccccccccccccchh
Confidence 445566788889998887766688888877665433222221 223666666667777777776654322222111
Q ss_pred EEEEeec---------------------------------------------cccccCCCceEEecCCcEEEEEeCCCCC
Q psy15127 155 LTVHLLR---------------------------------------------DDFRAEPKDTRVASGETALLECGPPKGQ 189 (633)
Q Consensus 155 l~V~~~~---------------------------------------------p~~~~~~~~~~~~~g~~~~l~C~~~~~~ 189 (633)
+.+..+. +...+......+..|..+++.|. ..+.
T Consensus 141 ~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~c~-~~~~ 219 (774)
T KOG1026|consen 141 SLVGNPFTCSCSIRWLDRYREDGFCVPYRGLACLNFLSNGTVANESIQLCGEIENRIRAANLTVEEGSSITLKCS-QAGI 219 (774)
T ss_pred hhccCCCCcchhhhHHhhhcccCCCCCchhhHHHhhcCCceehhhhhhhhcchhhhhhhhhhhhcccchheeeee-cccC
Confidence 1111110 00000001234567899999999 7899
Q ss_pred CCCeEEEEECCEEeccCCCeeEEeccceeeeEEEeeeEEEEeecCCCCCCccc---ccccceeEEecCCceEEEEEEEee
Q psy15127 190 PEPTLHWKKNGQFIDLESSKSLDLSRRTLGWLRVRPLYWNVARPRANLNPRYI---GRKMASLLIWNHPRVNRLSCFAEG 266 (633)
Q Consensus 190 p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~y~C~a~~~~~~~p~~~---~~~~~~~~~~~~g~~~~l~C~~~g 266 (633)
|.+.+.|+.++............-. ....+.-+++|.+.+..+...... ...............-.-.|...+
T Consensus 220 ~vp~~~~~~~~~~~~~~~~~~~~c~----~~~~~~~~~~c~~E~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~C~~~~ 295 (774)
T KOG1026|consen 220 PVPCHYWFPNCLASSNTNQTSSLCR----SECEVLENDLCIAENAVARSNPSILLVVDLPKAEVLLCSPLSDHHNCIPIG 295 (774)
T ss_pred CCcceeeecccccccCCCccccccc----ccceeeechhhHHHHhhhhcCceeeeEEecccccccCCCCccccCceeeee
Confidence 9999999987765544322221111 111112238898887765332110 001111111111122245566544
Q ss_pred ---ecCCeeEEEECCEEEEeccCCccceEEEccC-ceEEEcCCCCCCCeEEEEEEEeCCceeEEEEEEEEEe
Q psy15127 267 ---SPLPSVFWTQEGSQVLMFPGNAYGHLHVTQE-GTLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVRE 334 (633)
Q Consensus 267 ---~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~~-~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~ 334 (633)
+|.+...|..++..+.-... ........ .-+........+.|.|+|++.+..|.........+..
T Consensus 296 ~~~~~~~~~~~~~~~~~~~~~g~---~~~t~s~~~~C~~~~~~~h~~~~~~~~~~e~~~g~~~~r~~g~~~~ 364 (774)
T KOG1026|consen 296 ITANPGPALHWCYNGSGLNYRGT---VCVTKSGKEQCLPWNDPPHSHNGNYTLFPELPGGKNYCRNPGGFMS 364 (774)
T ss_pred ccCCCCCceeeeecCccceEecc---cccccccCcCCcccCcCcccccCcceeeecccCccccccCcCcccc
Confidence 45567889888865431111 00111111 2333333355678999999999988776655555543
No 427
>PF05790 C2-set: Immunoglobulin C2-set domain; InterPro: IPR008424 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents C2-set domains, which are Ig-like domains resembling the antibody constant domain. C2-set domains are found primarily in the mammalian T-cell surface antigens CD2 (Cluster of Differentiation 2), CD4 and CD80, as well as in vascular (VCAM) and intercellular (ICAM) cell adhesion molecules. CD2 mediates T-cell adhesion via its ectodomain, and signal transduction utilising its 117-amino acid cytoplasmic tail []. CD2 displays structural and functional similarities with African swine fever virus (ASFV) LMW8-DR, a protein that is involved in cell-cell adhesion and immune response modulation, suggesting a possible role in the pathogenesis of ASFV infection []. CD4 is the primary receptor for HIV-1. CD4 has four immunoglobulin-like domains in its extracellular region that share the same structure, but can differ in sequence. Certain extracellular domains may be involved in dimerisation [].; GO: 0007155 cell adhesion, 0016021 integral to membrane; PDB: 1CID_A 1CDU_A 1WIQ_B 2NY4_B 2NY2_B 1WIP_B 1WIO_A 3S4S_G 1CDY_A 3S5L_G ....
Probab=85.04 E-value=13 Score=27.82 Aligned_cols=51 Identities=22% Similarity=0.349 Sum_probs=31.8
Q ss_pred CeeEEEECCEEEEeccCCccceEEEccCceEEEcCCCCCCCeEEEEEE-EeCCceeEEEEEEEE
Q psy15127 270 PSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSA-LSVAGSTTVRAFLQV 332 (633)
Q Consensus 270 ~~v~W~~~g~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a-~n~~g~~~~~~~l~v 332 (633)
+.+.|.-.+... ......+.......+|+|.+.|.| .+..-.......|.+
T Consensus 27 ~~~~l~~~~~k~------------~~~~~~~~~~~~~~~d~G~w~C~a~~~~~k~~~s~~~i~v 78 (80)
T PF05790_consen 27 PSLFLENPGKKS------------LETKKLVSTFTPTTEDSGTWVCTASDNEPKERESKIEILV 78 (80)
T ss_dssp EEEEEECSSCEE------------EEESSEEEEESBTCGGSEEEEEEEEECTTEEEEEEEEEEE
T ss_pred hhheeeccCccc------------cccceEEEEecCCCCCCEEEEEEEcCCceEEEEEEEEEEc
Confidence 466777655433 123345677778889999999999 555444444444433
No 428
>KOG3632|consensus
Probab=83.99 E-value=3 Score=45.71 Aligned_cols=133 Identities=17% Similarity=0.156 Sum_probs=77.3
Q ss_pred CCCCCCcEEEEeeCCeEEEEeCCCCCCCCCCcceeEEEEEEEEecCCCCeEEEEEeeeeceEEEecCCCCCeEEEEEEEE
Q psy15127 410 PGPPAAPVILNTTRGSVTLGWGEPEPRGGGVAPVIGYTVEYFSSDLQTGWVVAAHRITSTSITVSDLKPDTSYMFIVRAE 489 (633)
Q Consensus 410 p~~p~~~~~~~~~~~~i~l~W~~~~~~~~~~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~~~Y~~~v~a~ 489 (633)
+.+|..+++...+..+..++|-+-.... . . +.|.... +.. ........++|.+|.|++.|..+|-|.
T Consensus 672 ~vvpsqlrv~n~tqtSa~itwvp~nsn~----~---H-viyln~e---E~~--ps~a~~y~ytf~~lrpgt~y~a~vea~ 738 (1335)
T KOG3632|consen 672 PVVPSQLRVWNATQTSAMITWVPFNSNF----L---H-VIYLNAE---EPR--PSVAEMYNYTFMRLRPGTDYWASVEAA 738 (1335)
T ss_pred cccchhhhhhhhhchhhheeeeecCCCc----c---e-eeecCCc---cCC--CchhhhhHHHHhccCCCCccceecccc
Confidence 3568888888999999999999866321 1 1 1222111 111 011234568899999999999999887
Q ss_pred ec-ccc--------CCCCCCCCceeecCCCCCCCcchHHHHHHHhCCceEEeeeeeecccceEEEEEEEecCCCcccccc
Q psy15127 490 NS-HGL--------GIPSPVSPITRTLGLNSLVPQHLLDEARARLGTKVVNLRELIPTASTAVRITWEVSWGSVPQHLLD 560 (633)
Q Consensus 490 n~-~G~--------g~~s~~~~~~~t~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~si~v~W~~p~~~~p~~~~~ 560 (633)
-. .+. +.-.... .++|+.+-|..|+..+ . .-...+...+.++|.|| -+.+....
T Consensus 739 ~p~q~pwdl~~v~~etr~atv-~f~tLpAGppappldV-----------~---vE~g~spg~l~vswrPp--tldsag~s 801 (1335)
T KOG3632|consen 739 LPRQEPWDLRMVPMETRQATV-LFRTLPAGPPAPPLDV-----------K---VETGGSPGRLEVSWRPP--TLDSAGCS 801 (1335)
T ss_pred cCcCCCcccccchhhhhccce-eeecccCCCCCCchhe-----------e---eecCCCCceeeeeccCc--eecccccc
Confidence 55 221 1111222 3566666555555432 0 23355788999999955 12222223
Q ss_pred hhhhhcceeEEEE
Q psy15127 561 EARARLGTKVVNL 573 (633)
Q Consensus 561 ~~~~i~~y~~i~~ 573 (633)
.+-.++|| -++-
T Consensus 802 ngv~vtgY-avya 813 (1335)
T KOG3632|consen 802 NGVAVTGY-AVYA 813 (1335)
T ss_pred Cceeeeee-eeee
Confidence 34567778 5543
No 429
>PF03921 ICAM_N: Intercellular adhesion molecule (ICAM), N-terminal domain; InterPro: IPR013768 Intercellular adhesion molecules (ICAMs) and vascular cell adhesion molecule-1 (VCAM-1) are part of the immunoglobulin superfamily. They are important in inflammation, immune responses and in intracellular signalling events []. The ICAM family consists of five members, designated ICAM-1 to ICAM-5. They are known to bind to leucocyte integrins CD11/CD18 during inflammation and in immune responses. In addition, ICAMs may exist in soluble forms in human plasma, due to activation and proteolysis mechanisms at cell surfaces. ICAM-1 (CD54) contains five Ig-like domains. It is expressed on leucocytes, endothelial and epithelial cells, and is upregulated in response to bacterial invasion. The protein is a ligand for lymphocyte-function associated (LFA) antigens and also a receptor for CD11a,b/CD18, fibrinogen, human rhinovirus and Plasmodium falciparum-infected erythrocytes. ICAM-1 binding sites for CD11a/CD18 and its other binding partners are located in the first domain and are overlapping. ICAM-1 domain 2 seems to play an important role in maintaining the conformation of domain 1 and particularly the structural integrity of the LFA-1 ligand-binding site []. The 3-dimensional atomic structure of the tandem N-terminal Ig-like domains (D1 and D2) of ICAM-1 has been determined to 2.2A resolution and fitted into a cryoelectron microscopy reconstruction of a rhinovirus-ICAM-1 complex []. Extensive charge interactions between ICAM-1 and human rhinovirusesare largely conserved in major and minor receptor groups of rhinoviruses. The interaction of ICAMs with LFA-1 is mediated by a divalent cation bound to the insertion (I)-domain on the alpha chain of LFA-1 and the carboxyl group of a conserved glutamic acid residue on ICAMs. ICAM-2 (CD102) has two Ig-like domains. It is expressed on endothelial cells, leucocytes and platelets, and binds to CD11a'b/CD18. The protein is refractory to proinflammatory cytokines, and plays an important role in the adhesion of leucocytes to the uninduced endothelium []. ICAM-3 (CD50) contains five Ig-like domains and binds to leucocyte integrins CD11a'd/CD18. The protein plays an important role in the immune response and perhaps in signal transduction []. ICAM-4 (LW blood group Ag) is red blood cell (RBC) specific and binds to CD11a'b/CD18. It is associated with the RBC Rh antigens and could be important in retaining immature red cells in the bone marrow, or in the uptake of senescent cells into the spleen []. ICAM-5 (telencephalin) has nine Ig-like domains and is confined to the telencephalon of the brain. The role of this CD11a/CD18 binding molecule is not yet known []. VCAM-1 was first described as a cytokine-inducible endothelial adhesion molecule. It can bind to leucocyte integrin VL-4 (very late antigen-4) to recruit leucocytes to sites of inflammation []. The predominant form of VCAM-1 in vivo has an N-terminal extracellular region comprising seven Ig-like domains []. A conserved integrin-binding motif has been identified in domains 1 and 4, variants of which are present in the N-terminal domain of all members of the integrin-binding subgroup of the immunoglobulin superfamily. The structure of a VLA-4-binding fragment comprising the first two domains of VCAM-1 has been determined to 1.8A resolution. The integrin-binding motif is exposed and forms the N-terminal region of the loop between beta-strands C and D of domain 1 []. VCAM-1 domains 1 and 2 are structurally similar to ICAM-1 and ICAM-2 []. This entry represents the N-terminal domain of ICAM proteins such as ICAM-2, ICAM-3 and ICAM-4.; PDB: 3BN3_B 1T0P_B 1ZXQ_A 3TCX_A 1MQ8_A 1Z7Z_I 1IC1_A 1IAM_A.
Probab=82.56 E-value=20 Score=27.57 Aligned_cols=79 Identities=22% Similarity=0.219 Sum_probs=50.7
Q ss_pred eeeCCCceEEEcCCeEEEEEEEeccCCC-eEEEEeCCccCCCCCeEEcc---cceEEEccCCCCCCeEEEEEEEeCCceE
Q psy15127 74 PISEPSDATVLSGSVVEFVCRVGGDPLP-TILWRRDDGKMPTGRAKILD---DRSLQIENVGPQDEGLYICDVENLVGSI 149 (633)
Q Consensus 74 ~~~~~~~~~~~~G~~~~L~C~~~~~p~p-~i~W~~~~~~i~~~~~~~~~---~~~L~i~~v~~~d~G~Y~C~~~n~~g~~ 149 (633)
+...|+...+..|+++.+.|+.+ -+.| .+.|.-.-. +..... -..+.|.+++. | ..-.|.+.-.....
T Consensus 6 v~v~P~~~vV~~G~Sv~VNCSts-C~~p~~~GLET~L~-----k~~~~~g~~W~~f~LsnV~~-d-s~~~C~~~C~g~Q~ 77 (91)
T PF03921_consen 6 VRVSPEEPVVPPGGSVWVNCSTS-CPQPEKIGLETSLS-----KTELDSGPQWKAFQLSNVTE-D-SSPLCFFNCSGEQS 77 (91)
T ss_dssp EEEESSEEEEETTEEEEEEEEES-SSS-SEEEEESSSE-----EEEEEEETTEEEEEEEEE-S-C-EEEEEEEEETTEEE
T ss_pred EEEECCccEECCCCCEEEEEcCC-CCCCCcceEEEecC-----CcccCCCCcEEEEEEEcccc-C-CeEEEEEEcCCeEE
Confidence 45678889999999999999985 3444 344432111 111111 13677888886 4 56789998754457
Q ss_pred EEEEEEEEEee
Q psy15127 150 SLRASLTVHLL 160 (633)
Q Consensus 150 s~~~~l~V~~~ 160 (633)
.+.+.|+|..+
T Consensus 78 ~~~~~ItVY~~ 88 (91)
T PF03921_consen 78 SASANITVYKP 88 (91)
T ss_dssp EEEEEEEEEB-
T ss_pred EeEEeeEEeCC
Confidence 88889999877
No 430
>KOG4228|consensus
Probab=80.56 E-value=5.1 Score=45.00 Aligned_cols=105 Identities=18% Similarity=0.079 Sum_probs=69.2
Q ss_pred EEEEEEEcCCcceeEEEEEEeecCCCCCceecCCCCCCCCCCCCCcEEEEeeCCeEEEEeCCCCCCCCCCcceeEEEEEE
Q psy15127 371 LYTCTASSESGETSWSASLSVEPRPGPHAVHRMPDSGLFPGPPAAPVILNTTRGSVTLGWGEPEPRGGGVAPVIGYTVEY 450 (633)
Q Consensus 371 ~y~c~a~n~~g~~~~~~~l~v~~~p~~~~~~~~~~~~~~p~~p~~~~~~~~~~~~i~l~W~~~~~~~~~~~~i~~Y~v~~ 450 (633)
.|.|.+....|.....+.+.|...|.. +....+......+....|..+.. ....|.+.+
T Consensus 1 ~Y~~~~~~~~~~~~~~~~v~v~~~p~~---------------~~~~~vt~~~~~~~~~~~~~~~t------~~~~y~v~~ 59 (1087)
T KOG4228|consen 1 NYTCLARSGLGPGELITYVRVNGGPPG---------------PSTPNVTGSTATSWVQAELLGST------WPNYYQVIF 59 (1087)
T ss_pred CeeeeecccCCCccceEEEEecCCCCC---------------CCCcccccccccceeehhhccCC------Chhhhheee
Confidence 389999999988888788888765443 33444555667778888887763 344566666
Q ss_pred EEecCCCCeEEEEEeeeeceEEEecCCCCCeEEEEEEEEeccccCCCCCCC
Q psy15127 451 FSSDLQTGWVVAAHRITSTSITVSDLKPDTSYMFIVRAENSHGLGIPSPVS 501 (633)
Q Consensus 451 ~~~~~~~~~~~~~~~~~~~~~~i~~L~p~~~Y~~~v~a~n~~G~g~~s~~~ 501 (633)
+..... .... .......+....+.+...+.+ .+.|..|.+.++...
T Consensus 60 ~~~~s~--~~~~-~~~~~~~~s~~~~~~~~~~~~--~evnt~~~a~~~~~~ 105 (1087)
T KOG4228|consen 60 KALSSG--YGYI-DVDLTTRLSYPCLSPPSFLEL--VEVNTIGRAPFQCPV 105 (1087)
T ss_pred eEeccC--ccee-eccceeecccCCCCCcchhhh--hhccccccccccccc
Confidence 654332 1111 222234477778888888888 888999988876554
No 431
>PHA02865 MHC-like TNF binding protein; Provisional
Probab=79.94 E-value=7.3 Score=37.99 Aligned_cols=21 Identities=14% Similarity=0.425 Sum_probs=17.0
Q ss_pred eEEEEEEEecc-CC-CeEEEEeC
Q psy15127 88 VVEFVCRVGGD-PL-PTILWRRD 108 (633)
Q Consensus 88 ~~~L~C~~~~~-p~-p~i~W~~~ 108 (633)
.++|+|.|.|. |. ..+.|.|+
T Consensus 216 ~~tL~C~A~GFYP~~I~v~W~kd 238 (338)
T PHA02865 216 NTTLFCTFDSHYPSSVAAKWYNS 238 (338)
T ss_pred CceEEEEEEeEeCCccEEEEEec
Confidence 57999999985 33 36899999
No 432
>PF02480 Herpes_gE: Alphaherpesvirus glycoprotein E; InterPro: IPR003404 Glycoprotein E (gE) of Alphaherpesvirus forms a complex with glycoprotein I (gI), functioning as an immunoglobulin G (IgG) Fc binding protein. gE is involved in virus spread but is not essential for propagation [].; GO: 0016020 membrane; PDB: 2GJ7_F 2GIY_B.
Probab=79.19 E-value=17 Score=37.42 Aligned_cols=39 Identities=31% Similarity=0.217 Sum_probs=0.0
Q ss_pred cceEEEccCCCCCCeEEEEEEEeCCce-EEEEEEEEEEee
Q psy15127 122 DRSLQIENVGPQDEGLYICDVENLVGS-ISLRASLTVHLL 160 (633)
Q Consensus 122 ~~~L~i~~v~~~d~G~Y~C~~~n~~g~-~s~~~~l~V~~~ 160 (633)
.+.|.|.+++.+|+|.|+-...+..+. ....+.|.|..+
T Consensus 88 ~~~l~i~~a~~~~~GvY~l~~~~~~~~~~~~~~~v~v~~~ 127 (439)
T PF02480_consen 88 KGGLSILNATEQDSGVYTLYVRNDSGWAHQSVVFVTVKGP 127 (439)
T ss_dssp ----------------------------------------
T ss_pred CCceEEeccccccCeeEEEEecCCCCceEEEEEEEEEcCC
Confidence 467999999999999999999876555 344466666653
No 433
>PHA03189 UL14 tegument protein; Provisional
Probab=78.95 E-value=12 Score=35.27 Aligned_cols=70 Identities=23% Similarity=0.332 Sum_probs=40.1
Q ss_pred CCceEEEcCCeEEEEEEEeccCCCe--E-----EEEeC----------CccCCC--------CCeEEccc-----ceEEE
Q psy15127 78 PSDATVLSGSVVEFVCRVGGDPLPT--I-----LWRRD----------DGKMPT--------GRAKILDD-----RSLQI 127 (633)
Q Consensus 78 ~~~~~~~~G~~~~L~C~~~~~p~p~--i-----~W~~~----------~~~i~~--------~~~~~~~~-----~~L~i 127 (633)
|....+-.|+.+++.|.+..+.-|. | .|--. |..+.. .+..+... -+|++
T Consensus 59 pAP~l~pyGdrvtVpC~fp~H~WPevsIrarfCys~e~s~eLv~da~~G~~l~ndl~~~L~~~~W~Fedlg~aq~ltLtF 138 (348)
T PHA03189 59 PAPLLVPYGDRVTVPCTFPTHDWPEVSIRARFCYSPERSRELVVDADSGGELHNDLTYRLPEASWKFEDLGAAQRLTLTF 138 (348)
T ss_pred CCccccCCCceeeeeeeecCCCCceeeEEEEEeeccccceEEEEEcccCCEeccccceecccceeeeecccceeEEEEEE
Confidence 4455678899999999997664443 2 22111 111111 11111110 14555
Q ss_pred ccCCCCCCeEEEEEEEeCCce
Q psy15127 128 ENVGPQDEGLYICDVENLVGS 148 (633)
Q Consensus 128 ~~v~~~d~G~Y~C~~~n~~g~ 148 (633)
++..+-+|.|.|+..|....
T Consensus 139 -~v~t~taG~Y~CvLrN~tHg 158 (348)
T PHA03189 139 -RVSTSTAGMYECVLRNETHG 158 (348)
T ss_pred -EEEecccceEEEEeccccce
Confidence 56678899999999987544
No 434
>PHA03052 Hypothetical protein; Provisional
Probab=78.71 E-value=5 Score=28.36 Aligned_cols=35 Identities=17% Similarity=0.364 Sum_probs=27.7
Q ss_pred CCceEEEcCCeEEEEEEEe-cc--CCCeEEEEeCCccC
Q psy15127 78 PSDATVLSGSVVEFVCRVG-GD--PLPTILWRRDDGKM 112 (633)
Q Consensus 78 ~~~~~~~~G~~~~L~C~~~-~~--p~p~i~W~~~~~~i 112 (633)
|..+.+..|..++|.|.+. +. ..+.+.|.-|+..+
T Consensus 4 P~~i~~slGs~ltI~Ckv~lg~g~~~a~V~W~~N~~~~ 41 (69)
T PHA03052 4 PEGIVTSLGSNLTITCKVSLRPPTTDADVFWISNGMYY 41 (69)
T ss_pred CccEEEEccCCceEeEEEEecCCCcceEEEEEeCCcEE
Confidence 4567788999999999995 32 35579999998877
No 435
>KOG1225|consensus
Probab=77.36 E-value=7.2 Score=40.71 Aligned_cols=153 Identities=15% Similarity=0.054 Sum_probs=89.4
Q ss_pred CcEEEEeeCCeEEEEeCCCCCCCCCCcceeEEEEEEEEecCCCCeEEEEEeeeeceEEEecCCCCCeEEEEEEEE-eccc
Q psy15127 415 APVILNTTRGSVTLGWGEPEPRGGGVAPVIGYTVEYFSSDLQTGWVVAAHRITSTSITVSDLKPDTSYMFIVRAE-NSHG 493 (633)
Q Consensus 415 ~~~~~~~~~~~i~l~W~~~~~~~~~~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~~~Y~~~v~a~-n~~G 493 (633)
.......+...+.+.|.... ....|...|...+....-...........+.+..|.|++.|..++.++ +..|
T Consensus 371 ~~~~~~cs~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~~~~~~~~~v~~~~~ 443 (525)
T KOG1225|consen 371 LLLITECSPPSLCIAGVGRR-------RVTHCAGTYCPLGESGGDLQGRVPGDANSVDIQGLEPGDEYNCSVNTVAANIG 443 (525)
T ss_pred hhcccccCCCceeecccccc-------ccccccccccccccCCCccceeeccceeeeeeeeecCCcceeeehhhhhhhhc
Confidence 33444556667777777222 223333333332211111122234456778999999999999999988 4455
Q ss_pred cCCCCCCCCceeecCCCCCCCcchHHHHHHHhCCceEEeeeeeecccceEEEEEEEecCCCcccccchhhhhcceeEEEE
Q psy15127 494 LGIPSPVSPITRTLGLNSLVPQHLLDEARARLGTKVVNLRELIPTASTAVRITWEVSWGSVPQHLLDEARARLGTKVVNL 573 (633)
Q Consensus 494 ~g~~s~~~~~~~t~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~si~v~W~~p~~~~p~~~~~~~~~i~~y~~i~~ 573 (633)
..+..... ++.... +... .+.....+++.+.|..| .....+| .++|
T Consensus 444 ~~~~~~~~---~~~~~~---~g~~----------------~v~~~~~~s~e~~g~~~-----------s~~~~~~-~~~~ 489 (525)
T KOG1225|consen 444 SLPKDKSE---TTVLCW---NGGL----------------CVDGETESSLEVGGPCP-----------SSGTCGW-EVRC 489 (525)
T ss_pred cCCccccc---ceEeec---CCce----------------eeeeeeeccccccCCCC-----------Cccccce-EEEe
Confidence 55544332 222221 2222 67778899999999943 3445677 7788
Q ss_pred EEcCCCcccceeeeeeccceeEeecCCccceEEeeccccceeEEEEE
Q psy15127 574 RELIPTASTAVRITWEKYNMATVMNAATTTSYTVTHLRKFTKYEFFL 620 (633)
Q Consensus 574 ~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~i~~L~~~t~Y~~~v 620 (633)
....... ..........+.|+.++|.+++.|.+.+
T Consensus 490 ~~~~~~~------------~~~~~~~~~~~~~~~~~l~~c~~~~~~~ 524 (525)
T KOG1225|consen 490 GPCGNDG------------GVNAEPPPECTSYDRTGLGPCTEYEVSV 524 (525)
T ss_pred eecCccc------------ccccCCCCCCCCCCccCcccccceeccc
Confidence 3222211 1112233367899999999999999875
No 436
>KOG4152|consensus
Probab=76.84 E-value=12 Score=38.05 Aligned_cols=122 Identities=21% Similarity=0.281 Sum_probs=69.6
Q ss_pred ecccccCCEEEEEEEEcCCcceeEEEEEEeecC-CCCCceecCCCCCCCCCCCCCcEEEEeeCCeEEEEeCCCCCCCCCC
Q psy15127 362 CDLRETDSGLYTCTASSESGETSWSASLSVEPR-PGPHAVHRMPDSGLFPGPPAAPVILNTTRGSVTLGWGEPEPRGGGV 440 (633)
Q Consensus 362 ~~~~~~d~g~y~c~a~n~~g~~~~~~~l~v~~~-p~~~~~~~~~~~~~~p~~p~~~~~~~~~~~~i~l~W~~~~~~~~~~ 440 (633)
..+....+++|++.+.|..|-...+..+..... |. +|++|...++. .+-..+.+.|.+|...+ .
T Consensus 652 ~~lv~Gq~yrfrV~aIng~G~gp~s~i~~~kTc~pG------------~P~apS~~ri~-k~~eGi~l~weppt~p~--s 716 (830)
T KOG4152|consen 652 TSLVTGQAYRFRVTAINGKGPGPASTILKLKTCAPG------------KPTAPSGARIK-KTIEGISLVWEPPTKPG--S 716 (830)
T ss_pred cccccccceeeeeeeeeccCCCchhhheeeeeccCC------------CCCCccccccc-ccccceeecccCCCCCC--C
Confidence 355567888999999998886644444333321 11 23344444322 34467899999998765 5
Q ss_pred cceeEEEEEEEEe---cCCCCeEEEEEe------------eeeceEEEecCCCCCeEEEEEEEEeccccCCCC
Q psy15127 441 APVIGYTVEYFSS---DLQTGWVVAAHR------------ITSTSITVSDLKPDTSYMFIVRAENSHGLGIPS 498 (633)
Q Consensus 441 ~~i~~Y~v~~~~~---~~~~~~~~~~~~------------~~~~~~~i~~L~p~~~Y~~~v~a~n~~G~g~~s 498 (633)
+.|+.|..+.--. +.....+..... .....--+.+...+-...|||.|.|+.|.|+..
T Consensus 717 g~Iieys~ylAi~tq~~~~~~sql~fmr~ycg~~t~c~vt~g~l~tA~~d~t~~paivfri~aknekGyGpat 789 (830)
T KOG4152|consen 717 GTIIEYSPYLAIITQAGATGVSQLPFMRSYCGIITTCVVTSGKLITAVPDITTGPAIVFRIVAKNEKGYGPAT 789 (830)
T ss_pred cceEEeehhhHhhhhhhccCccccceeeeecccceeeEEecccceeeccccccCcceEEEEEecCCCCCCcce
Confidence 6788777653311 111111100000 001111233555577889999999999988755
No 437
>PHA03052 Hypothetical protein; Provisional
Probab=75.74 E-value=14 Score=26.28 Aligned_cols=38 Identities=18% Similarity=0.498 Sum_probs=29.9
Q ss_pred CCceEEecCCcEEEEEeCCCCCC--CCeEEEEECCEEecc
Q psy15127 168 PKDTRVASGETALLECGPPKGQP--EPTLHWKKNGQFIDL 205 (633)
Q Consensus 168 ~~~~~~~~g~~~~l~C~~~~~~p--~~~i~W~~~~~~~~~ 205 (633)
|....+..|..++|.|.+.-|.+ .+.+.|.-|+..+..
T Consensus 4 P~~i~~slGs~ltI~Ckv~lg~g~~~a~V~W~~N~~~~e~ 43 (69)
T PHA03052 4 PEGIVTSLGSNLTITCKVSLRPPTTDADVFWISNGMYYEE 43 (69)
T ss_pred CccEEEEccCCceEeEEEEecCCCcceEEEEEeCCcEEec
Confidence 45667889999999999766655 458889999988843
No 438
>KOG4228|consensus
Probab=74.86 E-value=20 Score=40.54 Aligned_cols=73 Identities=16% Similarity=0.237 Sum_probs=45.5
Q ss_pred EEeeCCeEEEEeCCCCCCCCCCcceeEEEEEEEEecCCCCeEEEEEeeeeceEEEecCCCCCeEEEEEEEEeccccCCCC
Q psy15127 419 LNTTRGSVTLGWGEPEPRGGGVAPVIGYTVEYFSSDLQTGWVVAAHRITSTSITVSDLKPDTSYMFIVRAENSHGLGIPS 498 (633)
Q Consensus 419 ~~~~~~~i~l~W~~~~~~~~~~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~~~Y~~~v~a~n~~G~g~~s 498 (633)
.......++++|.++. ...+..|.+.+...+.. ................++.|...+.++|.+.-..+.+...
T Consensus 173 ~~~~~~~it~~w~~~~-----~~~~~~ykl~~~~~d~~--~~~~v~~~~~~~~~t~~~~~~~~~~~~~ae~~~~~~~~~~ 245 (1087)
T KOG4228|consen 173 EEEEYTTITGSWSPPH-----AVSLDTYKLLHLDPDTG--YEISVTLTPPGSGGTGDLGPPSISRFKCAEPDRGPLGSST 245 (1087)
T ss_pred cceEEEEEEecCCCCC-----cccchhhhhhhcCCccc--ceeeeeccCCCCCcccCCCCcccccccccCccccccCCCC
Confidence 5667789999999987 35677788776655321 1111112223445556777777788888776665555443
No 439
>COG3401 Fibronectin type 3 domain-containing protein [General function prediction only]
Probab=73.39 E-value=17 Score=35.20 Aligned_cols=68 Identities=19% Similarity=0.147 Sum_probs=43.2
Q ss_pred CeEEEEeCCCCCCCCCCcceeEEEEEEEEecCCCCeEEEEEeeee--ceEEEecCCCCCeEEEEEEEEeccccCCCC
Q psy15127 424 GSVTLGWGEPEPRGGGVAPVIGYTVEYFSSDLQTGWVVAAHRITS--TSITVSDLKPDTSYMFIVRAENSHGLGIPS 498 (633)
Q Consensus 424 ~~i~l~W~~~~~~~~~~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~--~~~~i~~L~p~~~Y~~~v~a~n~~G~g~~s 498 (633)
-.+.+.|++.. .-+...|.|+....+.. ........+. -.+.-.+|.++..|.+.+.|.+-.+--..+
T Consensus 84 ~~~~~~w~~~~-----d~~~~~Y~i~~~~gD~~--f~r~~~~~n~l~~~~i~s~~~~~~~~~~~Iia~~f~~~~sfs 153 (343)
T COG3401 84 KSVKVFWSPHP-----DVSVGKYIIQRQNGDGK--FLRTGLVKNRLFVEFIDSDLGHNEKYMELIIAADFQMGKSFS 153 (343)
T ss_pred ceeeecccccC-----CCCCCeEEEEEecCchh--hhhhhHHHhccchhheecccccccceeeeEEeecccccceee
Confidence 34899999987 34677899987765422 1111111111 123334899999999999999887765444
No 440
>PHA02865 MHC-like TNF binding protein; Provisional
Probab=72.83 E-value=13 Score=36.27 Aligned_cols=21 Identities=14% Similarity=0.244 Sum_probs=17.8
Q ss_pred eEEEEEEEeeecCC--eeEEEEC
Q psy15127 257 VNRLSCFAEGSPLP--SVFWTQE 277 (633)
Q Consensus 257 ~~~l~C~~~g~p~~--~v~W~~~ 277 (633)
.++|.|.|.|.-|. .+.|.|+
T Consensus 216 ~~tL~C~A~GFYP~~I~v~W~kd 238 (338)
T PHA02865 216 NTTLFCTFDSHYPSSVAAKWYNS 238 (338)
T ss_pred CceEEEEEEeEeCCccEEEEEec
Confidence 57999999997654 7899999
No 441
>PF09240 IL6Ra-bind: Interleukin-6 receptor alpha chain, binding; InterPro: IPR015321 Members of this entry adopt a structure consisting of an immunoglobulin-like beta-sandwich, with seven strands in two beta-sheets, in a Greek-key topology. They are required for binding to the cytokine Interleukin-6 []. ; PDB: 1N26_A 1P9M_C 3LB6_C 1PVH_A 3L5H_A 1BQU_A 1I1R_A 3QT2_B 3BPN_C 3BPO_C ....
Probab=71.92 E-value=46 Score=26.06 Aligned_cols=82 Identities=17% Similarity=0.128 Sum_probs=52.4
Q ss_pred CCCcEEEEeeCCeEEEEeCCCCCCCCCCcceeEEEEEEEEecCCCCeEE--EEEee-eeceEEEecCCC----CCeEEEE
Q psy15127 413 PAAPVILNTTRGSVTLGWGEPEPRGGGVAPVIGYTVEYFSSDLQTGWVV--AAHRI-TSTSITVSDLKP----DTSYMFI 485 (633)
Q Consensus 413 p~~~~~~~~~~~~i~l~W~~~~~~~~~~~~i~~Y~v~~~~~~~~~~~~~--~~~~~-~~~~~~i~~L~p----~~~Y~~~ 485 (633)
|.++.+...+...+.-+|.+.... .+-..|.|.|+.........- ..... ......+...+. +..|.+.
T Consensus 2 ~~nlsC~~~~~~~m~CtW~~g~~~----~~~t~y~L~~~~~~~~~~~eC~~y~~~~~~~~gC~~~~~~~~~~~~~~~~v~ 77 (99)
T PF09240_consen 2 PQNLSCFIYNLEYMNCTWEPGKEA----PPDTQYTLYYWYSPLEEEKECPHYSKDSGTRIGCQFPVSEIDSSEFSQYNVC 77 (99)
T ss_dssp -EEEEEEEETTTEEEEEEECCTTC----STTEEEEEEEEETTSSSEEEESEEEESTSSEEEEEEESCTT-TTTTSEEEEE
T ss_pred CeeCEEEEECCEEEEEEECCCCCC----CCcccEEEEEEcCCCCccccCCCccccCCceeEEEecCCCccccccceEEEE
Confidence 445666667788999999987643 355789999998653322211 11111 133456655554 4589999
Q ss_pred EEEEeccccCCCC
Q psy15127 486 VRAENSHGLGIPS 498 (633)
Q Consensus 486 v~a~n~~G~g~~s 498 (633)
|.+.++.|.-.+.
T Consensus 78 V~~ss~~~~i~~~ 90 (99)
T PF09240_consen 78 VNGSSSAGSIRSS 90 (99)
T ss_dssp EEEEETTEEEECE
T ss_pred EEeccCCCccCCc
Confidence 9999999976543
No 442
>PF06832 BiPBP_C: Penicillin-Binding Protein C-terminus Family; InterPro: IPR009647 This conserved region of approximately 90 residues is found in a sub-group of bacterial Penicillin-Binding Proteins (PBPs). A variable length loop region separates this region from the transpeptidase unit (IPR001460 from INTERPRO). It is predicted to be a beta fold.
Probab=71.54 E-value=43 Score=25.58 Aligned_cols=55 Identities=18% Similarity=0.235 Sum_probs=35.7
Q ss_pred eEEEEEEEeccCCCeEEEEeCCccCCCCCeEEcccceEEEccCCCCCCeEEEEEEEeCCceEE
Q psy15127 88 VVEFVCRVGGDPLPTILWRRDDGKMPTGRAKILDDRSLQIENVGPQDEGLYICDVENLVGSIS 150 (633)
Q Consensus 88 ~~~L~C~~~~~p~p~i~W~~~~~~i~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~n~~g~~s 150 (633)
...|.+.+.+. ...+.|+.||..+.... ....+.+ .....|.|+-.+.+..|...
T Consensus 31 ~~~l~l~a~~~-~~~~~W~vdg~~~g~~~----~~~~~~~---~~~~~G~h~l~vvD~~G~~~ 85 (89)
T PF06832_consen 31 RQPLVLKAAGG-RGPVYWFVDGEPLGTTQ----PGHQLFW---QPDRPGEHTLTVVDAQGRSA 85 (89)
T ss_pred cceEEEEEeCC-CCcEEEEECCEEcccCC----CCCeEEe---CCCCCeeEEEEEEcCCCCEE
Confidence 45555555554 44899999999883321 1123433 33578999999988888744
No 443
>PF02124 Marek_A: Marek's disease glycoprotein A; InterPro: IPR001038 Equid herpesvirus 1 (Equine herpesvirus 1, EHV-1) glycoprotein 13 (EHV-1 gp13) has the characteristic features of a membrane-spanning protein: an N-terminal signal sequence; a hydrophobic membrane anchor region; a charged C-terminal cytoplasmic tail; and an exterior domain with nine potential N-glycosylation sites []. EHV-1 gp13 is the structural homologue of the gC-like glycoproteins of the Human herpesvirus 1 (HHV-1) and Human herpesvirus 2 (HHV-2) (gC-1 and gC-2 respectively), Pseudorabies virus (strain Indiana-Funkhauser/Becker) (PRV) (gIII) and Human herpesvirus 3 (HHV-3) (gp66). Secretory glycoprotein GP57-65 precursor (glycoprotein A - GA) is similar to Herpesvirus glycoprotein C, and belongs to the immunoglobulin gene superfamily [, ]. GA is thought to play an immunoevasive role in the pathogenesis of Marek's disease. It is a candidate for causing the early-stage immunosuppression that occurs after MDHV infection.
Probab=71.50 E-value=80 Score=28.68 Aligned_cols=61 Identities=13% Similarity=0.259 Sum_probs=31.0
Q ss_pred EEEEEEEeeecC--CeeEEEECCEEEEeccCCccceEEEccCceEEEcCCCCC--CCe--EEEEEEE
Q psy15127 258 NRLSCFAEGSPL--PSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKE--DAG--FFVCSAL 318 (633)
Q Consensus 258 ~~l~C~~~g~p~--~~v~W~~~g~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~--d~G--~Y~C~a~ 318 (633)
-...|.+.-.|. ..+.|.-++..............-...-+..+|.+..+. ..| +|+|...
T Consensus 92 g~AVC~A~CVP~~~v~l~W~v~d~~~~~~~~~~~~g~C~~~pglvnirs~~pls~~~~~~~YtC~l~ 158 (211)
T PF02124_consen 92 GYAVCTARCVPRGNVTLRWSVGDDPSPAPAATEITGVCAEHPGLVNIRSRRPLSDEDGPVEYTCRLI 158 (211)
T ss_pred CEEEEEcceeeCCCeEEEEEECCccCCCCCceeecCcccCCcceeEeecccCCCccCCceeEEEEEe
Confidence 356788877774 588999877542100000000001112234555554442 225 9999874
No 444
>PF06832 BiPBP_C: Penicillin-Binding Protein C-terminus Family; InterPro: IPR009647 This conserved region of approximately 90 residues is found in a sub-group of bacterial Penicillin-Binding Proteins (PBPs). A variable length loop region separates this region from the transpeptidase unit (IPR001460 from INTERPRO). It is predicted to be a beta fold.
Probab=70.33 E-value=46 Score=25.42 Aligned_cols=72 Identities=15% Similarity=0.177 Sum_probs=43.3
Q ss_pred ccccccceeEEecCC--ceEEEEEEEeeecCCeeEEEECCEEEEeccCCccceEEEccCceEEEcCCCCCCCeEEEEEEE
Q psy15127 241 YIGRKMASLLIWNHP--RVNRLSCFAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSAL 318 (633)
Q Consensus 241 ~~~~~~~~~~~~~~g--~~~~l~C~~~g~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~ 318 (633)
+..+.....+...++ +...|.+.+.+. ...+.|+-||..+.... ....+.+.. ...|.|+-.+.
T Consensus 13 I~~P~~g~~~~~~~~~~~~~~l~l~a~~~-~~~~~W~vdg~~~g~~~----------~~~~~~~~~---~~~G~h~l~vv 78 (89)
T PF06832_consen 13 ITSPPDGAVLALDPGIPERQPLVLKAAGG-RGPVYWFVDGEPLGTTQ----------PGHQLFWQP---DRPGEHTLTVV 78 (89)
T ss_pred EEecCCCCEEEeCCCCCccceEEEEEeCC-CCcEEEEECCEEcccCC----------CCCeEEeCC---CCCeeEEEEEE
Confidence 333333344444433 356677777666 44999999999873211 112333332 45699999998
Q ss_pred eCCceeEE
Q psy15127 319 SVAGSTTV 326 (633)
Q Consensus 319 n~~g~~~~ 326 (633)
...|....
T Consensus 79 D~~G~~~~ 86 (89)
T PF06832_consen 79 DAQGRSAS 86 (89)
T ss_pred cCCCCEEE
Confidence 88887654
No 445
>KOG1948|consensus
Probab=69.54 E-value=99 Score=34.29 Aligned_cols=22 Identities=23% Similarity=0.403 Sum_probs=20.2
Q ss_pred eceEEEecCCCCCeEEEEEEEE
Q psy15127 468 STSITVSDLKPDTSYMFIVRAE 489 (633)
Q Consensus 468 ~~~~~i~~L~p~~~Y~~~v~a~ 489 (633)
+..|+|.+|.|++.|.+++.+.
T Consensus 945 nG~yRiRGL~Pdc~Y~V~vk~~ 966 (1165)
T KOG1948|consen 945 NGTYRIRGLLPDCEYQVHVKSY 966 (1165)
T ss_pred CCcEEEeccCCCceEEEEEeec
Confidence 4689999999999999999987
No 446
>PLN02533 probable purple acid phosphatase
Probab=69.42 E-value=24 Score=36.55 Aligned_cols=21 Identities=14% Similarity=0.099 Sum_probs=18.0
Q ss_pred ccceEEeeccccceeEEEEEe
Q psy15127 601 TTTSYTVTHLRKFTKYEFFLV 621 (633)
Q Consensus 601 ~~~~~~i~~L~~~t~Y~~~v~ 621 (633)
......|++|+|+|.|..+|-
T Consensus 101 ~iH~v~l~~L~p~T~Y~Yrvg 121 (427)
T PLN02533 101 QINDVVIGPLKPNTVYYYKCG 121 (427)
T ss_pred eEEEEEeCCCCCCCEEEEEEC
Confidence 345678999999999999995
No 447
>TIGR00868 hCaCC calcium-activated chloride channel protein 1. distributions. found a row in 1A13.INFO that was not parsed out
Probab=68.96 E-value=2.1e+02 Score=32.52 Aligned_cols=88 Identities=8% Similarity=0.023 Sum_probs=46.9
Q ss_pred cccceEEEEEEEecCCCcccccchhhhhcceeEEEEEEcCCCcccceeeeeeccceeEee--cCCccceEE--eec--cc
Q psy15127 538 TASTAVRITWEVSWGSVPQHLLDEARARLGTKVVNLRELIPTASTAVRITWEKYNMATVM--NAATTTSYT--VTH--LR 611 (633)
Q Consensus 538 ~~~~si~v~W~~p~~~~p~~~~~~~~~i~~y~~i~~~~~~~~~~~~~~~~w~~~~~~~~~--~~~~~~~~~--i~~--L~ 611 (633)
.....|.|+|..| -.....|...+| .|+|...-..-. ++...=..++...+. ..+..-.++ ..+ .+
T Consensus 766 ~~~~~v~LsWTAP------G~d~D~G~a~~y-~ir~s~~~~~l~-~~f~~a~~vn~~~~~P~~ags~e~~~f~~~~~~~~ 837 (863)
T TIGR00868 766 FQGDNIILTWTAP------GDVLDHGRADRY-IIRISTSILDLR-DDFNDATQVNTTDLIPKEANSKEVFVFKPEGIPIE 837 (863)
T ss_pred ecCCEEEEEeeCC------CccCCCCccceE-EEEecCCHHHHH-hhhccccccccCCcCCCCCCceeEEEEeCCccccc
Confidence 4455699999976 112378999999 999955321110 000000011111111 112222333 344 33
Q ss_pred cceeEEEEEecccccc-ccccCC
Q psy15127 612 KFTKYEFFLVPFFKTV-EGARLD 633 (633)
Q Consensus 612 ~~t~Y~~~v~a~n~~g-~g~~s~ 633 (633)
.++.|.|-|+|.+..| .|..||
T Consensus 838 ~~~~~~~ai~a~d~~~~~s~~sn 860 (863)
T TIGR00868 838 NGTDLFIAVQAIDKANLTSEVSN 860 (863)
T ss_pred CCeEEEEEEEEEccccccccccc
Confidence 6889999999999774 455453
No 448
>PF02124 Marek_A: Marek's disease glycoprotein A; InterPro: IPR001038 Equid herpesvirus 1 (Equine herpesvirus 1, EHV-1) glycoprotein 13 (EHV-1 gp13) has the characteristic features of a membrane-spanning protein: an N-terminal signal sequence; a hydrophobic membrane anchor region; a charged C-terminal cytoplasmic tail; and an exterior domain with nine potential N-glycosylation sites []. EHV-1 gp13 is the structural homologue of the gC-like glycoproteins of the Human herpesvirus 1 (HHV-1) and Human herpesvirus 2 (HHV-2) (gC-1 and gC-2 respectively), Pseudorabies virus (strain Indiana-Funkhauser/Becker) (PRV) (gIII) and Human herpesvirus 3 (HHV-3) (gp66). Secretory glycoprotein GP57-65 precursor (glycoprotein A - GA) is similar to Herpesvirus glycoprotein C, and belongs to the immunoglobulin gene superfamily [, ]. GA is thought to play an immunoevasive role in the pathogenesis of Marek's disease. It is a candidate for causing the early-stage immunosuppression that occurs after MDHV infection.
Probab=66.78 E-value=1e+02 Score=28.04 Aligned_cols=95 Identities=18% Similarity=0.290 Sum_probs=45.7
Q ss_pred eEEEEeCCccCCCCCe----EEccc------ceEEE-ccCCCCCCeEEEEEEEeCCc-eEEEEEEEEEEeeccccccCCC
Q psy15127 102 TILWRRDDGKMPTGRA----KILDD------RSLQI-ENVGPQDEGLYICDVENLVG-SISLRASLTVHLLRDDFRAEPK 169 (633)
Q Consensus 102 ~i~W~~~~~~i~~~~~----~~~~~------~~L~i-~~v~~~d~G~Y~C~~~n~~g-~~s~~~~l~V~~~~p~~~~~~~ 169 (633)
.+.|+.||.++..... ....+ ++|.+ .+...+..-..+|.+.=... ..+..+...+. |.+...|.
T Consensus 8 ~~~Wf~dg~~v~~~~~~~~~~~~~~G~~s~vStl~~~~~~~~~~pp~i~C~v~W~r~~v~~~r~~a~~~---P~Vy~~P~ 84 (211)
T PF02124_consen 8 RFRWFEDGNPVEPRFIRDSSQVWSDGLFSRVSTLTLPGNSADSPPPSIRCQVTWYRDSVSETRFNATAT---PSVYPKPR 84 (211)
T ss_pred EEEEEECCEeCCccceeeEEEEecCCcEEEEEEEEecCCCCCCCCCcceEEEEEccCCCeeeEeecccc---cceecCCE
Confidence 5899999987763211 11112 35666 23333445689999862222 22332222111 33222232
Q ss_pred ce-EEecCCcEEEEEeCCCCCC--CCeEEEEECCEEe
Q psy15127 170 DT-RVASGETALLECGPPKGQP--EPTLHWKKNGQFI 203 (633)
Q Consensus 170 ~~-~~~~g~~~~l~C~~~~~~p--~~~i~W~~~~~~~ 203 (633)
-. ....| ...|. +.--| ...+.|..++...
T Consensus 85 vsv~F~~g---~AVC~-A~CVP~~~v~l~W~v~d~~~ 117 (211)
T PF02124_consen 85 VSVRFEDG---YAVCT-ARCVPRGNVTLRWSVGDDPS 117 (211)
T ss_pred EEEEecCC---EEEEE-cceeeCCCeEEEEEECCccC
Confidence 22 22223 23455 23323 2699999877654
No 449
>KOG1026|consensus
Probab=66.43 E-value=9.8 Score=41.51 Aligned_cols=143 Identities=22% Similarity=0.240 Sum_probs=79.1
Q ss_pred ceEEEcCCeEEEEEEEeccCCCeEEEEeCCccCCCCCeEE-c-ccceEEEccCCCCCCeEEEEEEEeCCceEEEEEEEEE
Q psy15127 80 DATVLSGSVVEFVCRVGGDPLPTILWRRDDGKMPTGRAKI-L-DDRSLQIENVGPQDEGLYICDVENLVGSISLRASLTV 157 (633)
Q Consensus 80 ~~~~~~G~~~~L~C~~~~~p~p~i~W~~~~~~i~~~~~~~-~-~~~~L~i~~v~~~d~G~Y~C~~~n~~g~~s~~~~l~V 157 (633)
...+..|..+++.|.+.+.|.|.+.|+..+.......... . .+....+.+ +.|.+.|..+.....+.+.+
T Consensus 201 ~~~v~~~~~~~~~c~~~~~~vp~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~--------~~c~~E~~~~~~~~~v~~~~ 272 (774)
T KOG1026|consen 201 NLTVEEGSSITLKCSQAGIPVPCHYWFPNCLASSNTNQTSSLCRSECEVLEN--------DLCIAENAVARSNPSILLVV 272 (774)
T ss_pred hhhhcccchheeeeecccCCCcceeeecccccccCCCcccccccccceeeec--------hhhHHHHhhhhcCceeeeEE
Confidence 3457788999999999999999999998776554321111 1 111222222 89999999888776677777
Q ss_pred EeeccccccCCCceEEecCCcEEEEEeC--CCCCCCCeEEEEECCEEeccCCCeeEEecc--ceee----eEEEeeeEEE
Q psy15127 158 HLLRDDFRAEPKDTRVASGETALLECGP--PKGQPEPTLHWKKNGQFIDLESSKSLDLSR--RTLG----WLRVRPLYWN 229 (633)
Q Consensus 158 ~~~~p~~~~~~~~~~~~~g~~~~l~C~~--~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~--~~~~----~~~~~g~y~C 229 (633)
..+ +..........- .-.|.. ..++|.+...|..++..+............ .-.. -....+.|+|
T Consensus 273 ~~p-~~~~~~~~~~~~------~~~C~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~t~s~~~~C~~~~~~~h~~~~~~~~ 345 (774)
T KOG1026|consen 273 DLP-KAEVLLCSPLSD------HHNCIPIGITANPGPALHWCYNGSGLNYRGTVCVTKSGKEQCLPWNDPPHSHNGNYTL 345 (774)
T ss_pred ecc-cccccCCCCccc------cCceeeeeccCCCCCceeeeecCccceEecccccccccCcCCcccCcCcccccCccee
Confidence 665 222111111100 112221 235667788888877654432211111111 0000 1222467888
Q ss_pred EeecCCCC
Q psy15127 230 VARPRANL 237 (633)
Q Consensus 230 ~a~~~~~~ 237 (633)
.+.+..+.
T Consensus 346 ~~e~~~g~ 353 (774)
T KOG1026|consen 346 FPELPGGK 353 (774)
T ss_pred eecccCcc
Confidence 88777653
No 450
>KOG4806|consensus
Probab=64.52 E-value=20 Score=34.66 Aligned_cols=28 Identities=11% Similarity=-0.017 Sum_probs=23.1
Q ss_pred cceEEeeccccceeEEEEEecccccccc
Q psy15127 602 TTSYTVTHLRKFTKYEFFLVPFFKTVEG 629 (633)
Q Consensus 602 ~~~~~i~~L~~~t~Y~~~v~a~n~~g~g 629 (633)
...-||-||.||++|.+.|.|.-..|..
T Consensus 409 i~teTI~gL~PgssYlldv~a~~~~g~~ 436 (454)
T KOG4806|consen 409 IETETILGLMPGSSYLLDVTANLSMGKP 436 (454)
T ss_pred hhhhhhcccccCceEEEEEEEcccCCcc
Confidence 3457899999999999999998776543
No 451
>PLN02533 probable purple acid phosphatase
Probab=60.59 E-value=69 Score=33.18 Aligned_cols=70 Identities=17% Similarity=0.242 Sum_probs=41.7
Q ss_pred CCCCCCcEEEEeeCCeEEEEeCCCCCCCCCCcceeEEEEEEEEecCCCCeEEEEE-----------eeeeceEEEecCCC
Q psy15127 410 PGPPAAPVILNTTRGSVTLGWGEPEPRGGGVAPVIGYTVEYFSSDLQTGWVVAAH-----------RITSTSITVSDLKP 478 (633)
Q Consensus 410 p~~p~~~~~~~~~~~~i~l~W~~~~~~~~~~~~i~~Y~v~~~~~~~~~~~~~~~~-----------~~~~~~~~i~~L~p 478 (633)
+..|..+.+.-...+.+.|+|.-.... .+. |+|-.....-....... ....+...|++|+|
T Consensus 41 ~~~P~qvhls~~~~~~m~V~W~T~~~~----~~~----V~yG~~~~~l~~~a~g~~~~~~~~~~~~~g~iH~v~l~~L~p 112 (427)
T PLN02533 41 PTHPDQVHISLVGPDKMRISWITQDSI----PPS----VVYGTVSGKYEGSANGTSSSYHYLLIYRSGQINDVVIGPLKP 112 (427)
T ss_pred CCCCceEEEEEcCCCeEEEEEECCCCC----CCE----EEEecCCCCCcceEEEEEEEEeccccccCCeEEEEEeCCCCC
Confidence 445777776666688999999987632 222 44433221111110000 00124578999999
Q ss_pred CCeEEEEEE
Q psy15127 479 DTSYMFIVR 487 (633)
Q Consensus 479 ~~~Y~~~v~ 487 (633)
++.|.|+|-
T Consensus 113 ~T~Y~Yrvg 121 (427)
T PLN02533 113 NTVYYYKCG 121 (427)
T ss_pred CCEEEEEEC
Confidence 999999994
No 452
>PHA03283 envelope glycoprotein E; Provisional
Probab=59.87 E-value=70 Score=33.14 Aligned_cols=38 Identities=24% Similarity=0.144 Sum_probs=32.0
Q ss_pred cceEEEccCCCCCCeEEEEEEEeCCceEEEEEEEEEEe
Q psy15127 122 DRSLQIENVGPQDEGLYICDVENLVGSISLRASLTVHL 159 (633)
Q Consensus 122 ~~~L~i~~v~~~d~G~Y~C~~~n~~g~~s~~~~l~V~~ 159 (633)
.+.|.|.+++.+++|.|+--.++..+.....+.|+|..
T Consensus 133 ~~~l~I~~at~~~aGVYtly~r~d~~~~~~vflvtVk~ 170 (542)
T PHA03283 133 RSVLQIQRATPNIAGVYTLHVSSDGMMKHSVFFVTVKK 170 (542)
T ss_pred CCeeEEEecccccCeEEEEEecCCCceEEEEEEEEecC
Confidence 46899999999999999999998777556667778876
No 453
>cd05890 Ig2_Nectin-1_like Second immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111) and similar proteins. Ig2_Nectin-1_like: domain similar to the second immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111). Nectin-1 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectins also heterophilically trans-interact with other CAMs such as nectin-like molecules (necls); nectin-1 for example, has been shown to trans-interact with necl-1. Nectins also interact with various other proteins, including the actin filament (F-actin)-binding protein, afadin. Mutation in the human nectin-1 gene is associ
Probab=58.23 E-value=22 Score=27.44 Aligned_cols=68 Identities=10% Similarity=0.181 Sum_probs=39.3
Q ss_pred eEEEEEEE-eccCCCeEEEEeC--Ccc-C---CCCCeEEcccceEEEccCCCCCCeEEEEEEEeCCceEEEEEEE
Q psy15127 88 VVEFVCRV-GGDPLPTILWRRD--DGK-M---PTGRAKILDDRSLQIENVGPQDEGLYICDVENLVGSISLRASL 155 (633)
Q Consensus 88 ~~~L~C~~-~~~p~p~i~W~~~--~~~-i---~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~n~~g~~s~~~~l 155 (633)
.+.=.|.+ .|.|++.|+|.-+ |.. . ........-.+.+.+-.....|.-..+|++....-.....+.|
T Consensus 22 v~VA~CiSa~GrPpa~ItW~t~l~G~~etq~~~~~~GT~TV~S~y~lVPs~~~~gk~lTCvV~h~~~~~~~~~~L 96 (98)
T cd05890 22 MLVATCVSANGKPPSVVRWDTRLKGEAEFQEIRNQNGTVTVISRYRLVPSREAHKQKLTCIVNYRNDRFTDSVTL 96 (98)
T ss_pred EEEEEEEcCCCcCCcEeEEEccCCCceeeeeeCCCCCCEEEEEEEEEeECHHHcCCEeEEEEEeccccccccEEe
Confidence 34458985 6889999999853 221 0 0001111112345666777889999999998654333333333
No 454
>PHA03286 envelope glycoprotein E; Provisional
Probab=51.89 E-value=1.2e+02 Score=30.80 Aligned_cols=77 Identities=17% Similarity=0.091 Sum_probs=49.0
Q ss_pred cceEEEccCCCCCCeEEEEEEEeCCce-EEEEEEEEEEee----ccccc--cCCCc------------eEEecCCcEEEE
Q psy15127 122 DRSLQIENVGPQDEGLYICDVENLVGS-ISLRASLTVHLL----RDDFR--AEPKD------------TRVASGETALLE 182 (633)
Q Consensus 122 ~~~L~i~~v~~~d~G~Y~C~~~n~~g~-~s~~~~l~V~~~----~p~~~--~~~~~------------~~~~~g~~~~l~ 182 (633)
++.|.|.+++.+++|.|+--..|+.+. ....+-|.|... +|... +.|.. .....|+++.+.
T Consensus 126 ~~~L~I~nAt~qnaGiYtly~rnd~~~~~~~vflVtV~~~~~~r~p~~~~pv~p~~~~~~f~l~ny~S~lF~~GDTF~vS 205 (492)
T PHA03286 126 GKELTILNASSQNAGIYIRYSRNGTRTAVMDVLVVWVSGHGRARDPTMNIPITPPSTRVDLSLKNFKAFLYNVGDTVDAS 205 (492)
T ss_pred CCceEEeeccccccceEEEEEcCCCCcEEEEEEEEEEecCCCCCCCCcccCCCCcccceEEEEecccceEecCCCeEEEE
Confidence 468999999999999999999988766 355566777532 22222 22221 233568888776
Q ss_pred EeCCC----CCCCCeEEEEE
Q psy15127 183 CGPPK----GQPEPTLHWKK 198 (633)
Q Consensus 183 C~~~~----~~p~~~i~W~~ 198 (633)
-.... +.-...+.|+.
T Consensus 206 v~l~~~~~d~~Fsl~i~W~y 225 (492)
T PHA03286 206 VTAHLTNWAGAFSLEFRVLF 225 (492)
T ss_pred EEEeecccCCCceEEEEEEE
Confidence 55321 22234788875
No 455
>PF06328 Lep_receptor_Ig: Ig-like C2-type domain; InterPro: IPR010457 This entry represents a ligand-binding domain that displays similarity to C2-set immunoglobulin domains (antibody constant domain 2) []. The two cysteine residues form a disulphide bridge.; PDB: 3L5H_A 1P9M_A 1I1R_A 2D9Q_B.
Probab=51.28 E-value=26 Score=26.86 Aligned_cols=41 Identities=22% Similarity=0.341 Sum_probs=28.8
Q ss_pred CCCceEEecCCcEEEEEeCCCCC----CCCeEEEEECCEEeccCC
Q psy15127 167 EPKDTRVASGETALLECGPPKGQ----PEPTLHWKKNGQFIDLES 207 (633)
Q Consensus 167 ~~~~~~~~~g~~~~l~C~~~~~~----p~~~i~W~~~~~~~~~~~ 207 (633)
.|....+..|..++..|....+- ....|.|..++..++...
T Consensus 9 ~p~~pvv~lGS~vtasC~l~~~c~~~~~a~~I~Wkln~~~iP~~q 53 (89)
T PF06328_consen 9 SPPSPVVSLGSNVTASCVLKQNCSHSVNASQIVWKLNGEKIPGSQ 53 (89)
T ss_dssp ECSSSEEETTS-EEEEEEE-CCCHCT-STTCEEEECSSCESTCGC
T ss_pred ecCCCEEeCCCCEEEEEEEECCCCCCcccceEEEEECCEECChhH
Confidence 44556789999999999975542 455999999988665443
No 456
>cd05890 Ig2_Nectin-1_like Second immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111) and similar proteins. Ig2_Nectin-1_like: domain similar to the second immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111). Nectin-1 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectins also heterophilically trans-interact with other CAMs such as nectin-like molecules (necls); nectin-1 for example, has been shown to trans-interact with necl-1. Nectins also interact with various other proteins, including the actin filament (F-actin)-binding protein, afadin. Mutation in the human nectin-1 gene is associ
Probab=50.31 E-value=35 Score=26.35 Aligned_cols=62 Identities=19% Similarity=0.291 Sum_probs=34.1
Q ss_pred eEEEEEE-EeeecCCeeEEEEC--CEEEEeccCCccceEEEccCceEEEcCCCCCCCeEEEEEEEeC
Q psy15127 257 VNRLSCF-AEGSPLPSVFWTQE--GSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSV 320 (633)
Q Consensus 257 ~~~l~C~-~~g~p~~~v~W~~~--g~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~ 320 (633)
.+.-.|. +.|.|+..|+|.-+ |..-........+...+ .+.+.+-.....|.-.-+|.+...
T Consensus 22 v~VA~CiSa~GrPpa~ItW~t~l~G~~etq~~~~~~GT~TV--~S~y~lVPs~~~~gk~lTCvV~h~ 86 (98)
T cd05890 22 MLVATCVSANGKPPSVVRWDTRLKGEAEFQEIRNQNGTVTV--ISRYRLVPSREAHKQKLTCIVNYR 86 (98)
T ss_pred EEEEEEEcCCCcCCcEeEEEccCCCceeeeeeCCCCCCEEE--EEEEEEeECHHHcCCEeEEEEEec
Confidence 4566898 57899999999853 32111111111111111 123444455666777888888664
No 457
>PF02010 REJ: REJ domain; InterPro: IPR002859 The REJ (Receptor for Egg Jelly) domain is found in PKD1 P98161 from SWISSPROT and the sperm receptor for egg jelly Q26627 from SWISSPROT. The exact function of this domain is unknown. The domain is 600 amino acids long so is probably composed of multiple structural domains. There are six completely conserved cysteine residues that may form disulphide bridges. This region contains tandem PKD-like domains. Sequence similarity between a region of the autosomal dominant polycystic kidney disease (ADPKD) protein, polycystin-1 and a sea urchin sperm glycoprotein involved in fertilization, the receptor for egg jelly (suREJ) has been known for some time. The suREJ protein binds the glycoprotein coat of the egg (egg jelly), triggering the acrosome reaction, which transforms the sperm into a fusogenic cell. The sequence similarity and expression pattern suggests that the predicted human PKDREJ protein is a mammalian equivalent of the suREJ protein and therefore may have a central role in human fertilization [].; PDB: 2E7M_A 2YRL_A.
Probab=48.78 E-value=30 Score=36.05 Aligned_cols=28 Identities=29% Similarity=0.538 Sum_probs=0.0
Q ss_pred eceEEE--ecCCCCCeEEEEEEEEeccccC
Q psy15127 468 STSITV--SDLKPDTSYMFIVRAENSHGLG 495 (633)
Q Consensus 468 ~~~~~i--~~L~p~~~Y~~~v~a~n~~G~g 495 (633)
...++| ..|.++..|.|++.+....+..
T Consensus 147 ~~~l~i~~~~l~~~~~y~f~ltv~k~~r~s 176 (440)
T PF02010_consen 147 SSSLTIPASTLSPGSTYTFTLTVSKGSRSS 176 (440)
T ss_dssp ------------------------------
T ss_pred CEEEEEEhHHcCCCceEEEEEEEEeCCCCc
Confidence 345555 6799999999999988777633
No 458
>PF10342 GPI-anchored: Ser-Thr-rich glycosyl-phosphatidyl-inositol-anchored membrane family; InterPro: IPR018466 This entry represents glycoproteins involved in cell wall (1-->6)-beta-glucan assembly. In yeast a null mutation leads to severe growth defects, aberrant multi-budded morphology, and mating defects [, ]. The entry includes DRMIP and Hesp-379, which are involved in both fruiting body formation and in host attack respectively. Hesp-379 is a haustorially expressed secreted protein; the haustorium being the small sucker that penetrates host tissue [].
Probab=45.10 E-value=85 Score=23.93 Aligned_cols=66 Identities=17% Similarity=0.179 Sum_probs=36.7
Q ss_pred cceEEEEEEEecCCCcccccchhhhhcceeEEEEEEcCCCcccceeeeeeccceeEeecCCccceEEe-eccccceeEEE
Q psy15127 540 STAVRITWEVSWGSVPQHLLDEARARLGTKVVNLRELIPTASTAVRITWEKYNMATVMNAATTTSYTV-THLRKFTKYEF 618 (633)
Q Consensus 540 ~~si~v~W~~p~~~~p~~~~~~~~~i~~y~~i~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~i-~~L~~~t~Y~~ 618 (633)
...++|.|+. .+.....| .|.+.......- ..+... ...+........+++ .+|.++..|.|
T Consensus 12 g~~~~I~W~~-----------~~~~~~~~-~I~L~~g~~~~~----~~~~~i-a~~v~~~~gs~~~~~p~~l~~~~~Y~i 74 (93)
T PF10342_consen 12 GQPITITWTS-----------DGTDPGNV-TIYLCNGNNTNL----NFVQTI-ASNVSNSDGSYTWTIPSDLPSGGDYFI 74 (93)
T ss_pred CCcEEEEEeC-----------CCCCCcEE-EEEEEcCCCCCc----ceeEEE-EecccCCCCEEEEEcCCCCCCCCcEEE
Confidence 4789999992 22333667 666655544220 011111 001111224556666 56999999999
Q ss_pred EEec
Q psy15127 619 FLVP 622 (633)
Q Consensus 619 ~v~a 622 (633)
++..
T Consensus 75 ~~~~ 78 (93)
T PF10342_consen 75 QIVN 78 (93)
T ss_pred EEEE
Confidence 9984
No 459
>PHA03240 envelope glycoprotein M; Provisional
Probab=44.42 E-value=33 Score=30.58 Aligned_cols=61 Identities=18% Similarity=0.296 Sum_probs=37.7
Q ss_pred ceEEEcCCeEEEEEEEeccCCCeEEEEe-------CC-c---cC----C--CCC-----------eEE--cccceEEEcc
Q psy15127 80 DATVLSGSVVEFVCRVGGDPLPTILWRR-------DD-G---KM----P--TGR-----------AKI--LDDRSLQIEN 129 (633)
Q Consensus 80 ~~~~~~G~~~~L~C~~~~~p~p~i~W~~-------~~-~---~i----~--~~~-----------~~~--~~~~~L~i~~ 129 (633)
.+.+.+|..|+|.-.--..|.-.+.|++ .+ . ++ + .++ ... =.+++|.|.+
T Consensus 32 evt~r~G~nVTLga~~~lhpgq~v~Wy~~~c~~~~G~G~~~~plC~Ytppk~~r~ktl~~t~~nt~i~y~C~NstL~i~~ 111 (258)
T PHA03240 32 EHTTREGDPLLLGGGHGLGAGQKAHWYKHKCDGITGNGDKLHPICTYDPPKNGKGKTLDESAENSFILYECHNSTLIIAH 111 (258)
T ss_pred ecccccCCceeeCCcccCCCCCEEEEEeeecccccCCCCCCceeEEecCCccccccccccccCCCceEEEeccceEEEEE
Confidence 4567889999987432224555799998 21 1 11 1 111 001 1257899999
Q ss_pred CCCCCCeEEEE
Q psy15127 130 VGPQDEGLYIC 140 (633)
Q Consensus 130 v~~~d~G~Y~C 140 (633)
+..+|.|+|.-
T Consensus 112 vn~sd~~nYcr 122 (258)
T PHA03240 112 LNLSDAGEYCR 122 (258)
T ss_pred EeecCcchhhh
Confidence 99999999843
No 460
>PF14292 SusE: SusE outer membrane protein
Probab=43.60 E-value=1.1e+02 Score=25.04 Aligned_cols=32 Identities=16% Similarity=0.182 Sum_probs=21.2
Q ss_pred cccceEEEEEEEecCCCcccccchhh-hhcceeEEEEEEcCC
Q psy15127 538 TASTAVRITWEVSWGSVPQHLLDEAR-ARLGTKVVNLRELIP 578 (633)
Q Consensus 538 ~~~~si~v~W~~p~~~~p~~~~~~~~-~i~~y~~i~~~~~~~ 578 (633)
...+.++++|+++ ..+.. ....| .++....+.
T Consensus 42 ~~~~a~tftW~~~--------~~~~~~a~v~Y-~lq~~~~~~ 74 (122)
T PF14292_consen 42 ASDNAVTFTWTAA--------DYGGPDAPVTY-TLQFDKKGN 74 (122)
T ss_pred cCCceEEEEEECC--------ccCCCCCceEE-EEEEeccCC
Confidence 4557999999954 33333 56678 777776543
No 461
>PF11141 DUF2914: Protein of unknown function (DUF2914); InterPro: IPR022606 This bacterial family of proteins has no known function.
Probab=42.50 E-value=1.1e+02 Score=21.86 Aligned_cols=55 Identities=13% Similarity=0.136 Sum_probs=32.6
Q ss_pred eEEEEeCCccCCCCCeEEccc--ceEEEccCCCCCCeEEEEEEEeCCceEEEEEEEE
Q psy15127 102 TILWRRDDGKMPTGRAKILDD--RSLQIENVGPQDEGLYICDVENLVGSISLRASLT 156 (633)
Q Consensus 102 ~i~W~~~~~~i~~~~~~~~~~--~~L~i~~v~~~d~G~Y~C~~~n~~g~~s~~~~l~ 156 (633)
...|+++++.+..-...+... .+-.-..+...+.|.++..+....|..-......
T Consensus 8 ~H~W~~~g~~~~~i~l~i~g~r~Rt~S~k~~~~~~~G~WrV~V~~~~G~~l~~~~F~ 64 (66)
T PF11141_consen 8 YHRWYKNGKLVARIPLPISGGRWRTWSSKQNFPDQPGDWRVEVVDEDGQVLGSLRFS 64 (66)
T ss_pred EEEEEECCEEEEEEEEeccCCCEEEEEEeecCCCCCcCEEEEEEcCCCCEEEEEEEE
Confidence 468999998653211111111 1223334445789999999998888754444443
No 462
>PF11344 DUF3146: Protein of unknown function (DUF3146); InterPro: IPR021492 This family of proteins with unknown function appear to be restricted to Cyanobacteria.
Probab=36.81 E-value=24 Score=25.59 Aligned_cols=15 Identities=20% Similarity=0.219 Sum_probs=12.7
Q ss_pred ccccceeEEEEEecc
Q psy15127 609 HLRKFTKYEFFLVPF 623 (633)
Q Consensus 609 ~L~~~t~Y~~~v~a~ 623 (633)
.|+||-.|.|.|+|.
T Consensus 66 ~LEpGgdY~Ftirak 80 (80)
T PF11344_consen 66 QLEPGGDYSFTIRAK 80 (80)
T ss_pred eccCCCceEEEEecC
Confidence 488999999999873
No 463
>PF01688 Herpes_gI: Alphaherpesvirus glycoprotein I; InterPro: IPR002874 This family consists of glycoprotein I from various members of the alphaherpesvirinae. These include Human herpesvirus 1 (HHV-1), Human herpesvirus 3 (HHV-3) and Suid herpesvirus 1 (Pseudorabies virus). Glycoprotein I (gI) is important during natural infection, mutants lacking gI produce smaller lesions at the site of infection and show reduced neuronal spread []. gI forms a heterodimeric complex with gE; this complex displays Fc receptor activity (binds to the Fc region of immunoglobulin) []. Glycoproteins are also important in the production of virus-neutralizing antibodies and cell mediated immunity []. The alphaherpesviridae have a dsDNA genome and have no RNA stage during viral replication.; GO: 0033643 host cell part
Probab=35.43 E-value=76 Score=27.43 Aligned_cols=34 Identities=29% Similarity=0.269 Sum_probs=25.9
Q ss_pred eEEEccCCCCCCeEEEEEEEeCCceEEEEEEEEE
Q psy15127 124 SLQIENVGPQDEGLYICDVENLVGSISLRASLTV 157 (633)
Q Consensus 124 ~L~i~~v~~~d~G~Y~C~~~n~~g~~s~~~~l~V 157 (633)
.|+|.+.+.+|+|.|.-++.-........+.+.+
T Consensus 125 lL~i~~p~~~dsG~Y~lRV~l~~~~~~d~F~~~v 158 (161)
T PF01688_consen 125 LLRIRNPRPEDSGIYYLRVWLDGANKADVFRLSV 158 (161)
T ss_pred EEEeCCCCcccceEEEEEEEECCCCCCcEEEEee
Confidence 5999999999999999999866544444444443
No 464
>PHA03112 IL-18 binding protein; Provisional
Probab=35.39 E-value=1.8e+02 Score=24.49 Aligned_cols=65 Identities=17% Similarity=0.183 Sum_probs=37.4
Q ss_pred EEcCCeEEEEEEEecc-CC-CeEEEEeCC-ccCCCCC-------eEE----------cccceEEEccCCCC-CCeEEEEE
Q psy15127 83 VLSGSVVEFVCRVGGD-PL-PTILWRRDD-GKMPTGR-------AKI----------LDDRSLQIENVGPQ-DEGLYICD 141 (633)
Q Consensus 83 ~~~G~~~~L~C~~~~~-p~-p~i~W~~~~-~~i~~~~-------~~~----------~~~~~L~i~~v~~~-d~G~Y~C~ 141 (633)
..+|+++.|.|.+-+. |. ..+.|..++ +...+.. +.. .....|.+.+++.. +.-..+|+
T Consensus 35 ~k~~~~vvL~C~gcs~fp~fS~lYWl~gn~~s~~d~~~~~hy~e~~~~~~~~~~~~~~~~~~l~l~~vt~~~~~T~~TCV 114 (141)
T PHA03112 35 TKETEKVVLECRGCSYFPKFSYVYWLIGNNKSDVDQKPIEHYGEGIYESEKPRTCDNEPRTDLIVYNVTDEMKFTKLTCV 114 (141)
T ss_pred cCCCCEEEEEEECccCCCCceEEEEEcCCCccchhccccccccccccCCccccccCCcceeEEEEEecCCcceecceEEE
Confidence 4569999999999755 43 468999765 3221100 000 01135666777643 33377887
Q ss_pred EEeCCc
Q psy15127 142 VENLVG 147 (633)
Q Consensus 142 ~~n~~g 147 (633)
.....+
T Consensus 115 L~D~~~ 120 (141)
T PHA03112 115 LMDLDG 120 (141)
T ss_pred EecCCc
Confidence 655443
No 465
>PF09067 EpoR_lig-bind: Erythropoietin receptor, ligand binding; InterPro: IPR015152 Members of this entry include the growth hormone and erythropoietin receptors. The latter interacts with erythropoietin (EPO), with subsequent initiation of the downstream chain of events associated with binding of EPO to the receptor, including EPO-induced erythroblast proliferation and differentiation through induction of the JAK2/STAT5 signalling cascade. The domain adopts a secondary structure composed of a short amino-terminal helix, followed by two beta-sandwich regions []. ; PDB: 3NCB_B 3NCF_B 3NCE_B 3N0P_B 3NCC_B 1BP3_B 3N06_B 3MZG_B 3D48_R 1F6F_C ....
Probab=34.01 E-value=1.8e+02 Score=23.09 Aligned_cols=72 Identities=7% Similarity=0.101 Sum_probs=42.7
Q ss_pred eecccceEEEEEEEecCCCcccccchhhhhcceeEEEEEEcCCCcccceeeeeeccceeEeecCC--cc-----ceEEee
Q psy15127 536 IPTASTAVRITWEVSWGSVPQHLLDEARARLGTKVVNLRELIPTASTAVRITWEKYNMATVMNAA--TT-----TSYTVT 608 (633)
Q Consensus 536 ~~~~~~si~v~W~~p~~~~p~~~~~~~~~i~~y~~i~~~~~~~~~~~~~~~~w~~~~~~~~~~~~--~~-----~~~~i~ 608 (633)
..-+...++=-|++. .. .+.-+.| .+.|.... .. |+. . ...... .. ..|.-.
T Consensus 17 ~S~~~etftC~W~~g--------~~-~~l~~~y-~L~Y~~~~-~~-------~~e--C-p~~~~~~~ns~~~~~C~F~~~ 75 (104)
T PF09067_consen 17 FSREMETFTCFWEPG--------SE-GNLPTNY-TLFYKKEG-EE-------WKE--C-PDYSTSGPNSTVRHICYFPKS 75 (104)
T ss_dssp EBSSSS-EEEEEEEE--------SS-STSTCEE-EEEEEETT-SE-------EEE--E-SESSTTETTEEEEEEEEE-CC
T ss_pred CCCCCCcEEEEeeCC--------CC-CCCCCcE-EEEEEeCC-CC-------Ccc--C-CCeEecCCCCceeEEEEcCCC
Confidence 344567889999954 22 2333449 99998775 21 321 1 111111 22 334445
Q ss_pred ccccceeEEEEEeccccccc
Q psy15127 609 HLRKFTKYEFFLVPFFKTVE 628 (633)
Q Consensus 609 ~L~~~t~Y~~~v~a~n~~g~ 628 (633)
+..-++.|.|+|.|.|..|-
T Consensus 76 ~t~lf~~y~i~V~a~~~~~~ 95 (104)
T PF09067_consen 76 DTSLFVPYCIQVEATNALGS 95 (104)
T ss_dssp GCSSSSEEEEEEEEEETTEE
T ss_pred CeEEEEEEEEEEEeccCCCc
Confidence 89999999999999987763
No 466
>PHA03282 envelope glycoprotein E; Provisional
Probab=33.59 E-value=38 Score=34.31 Aligned_cols=20 Identities=35% Similarity=0.722 Sum_probs=19.1
Q ss_pred eEEEccCCCCCCeEEEEEEE
Q psy15127 124 SLQIENVGPQDEGLYICDVE 143 (633)
Q Consensus 124 ~L~i~~v~~~d~G~Y~C~~~ 143 (633)
.|.|.|+..+++|.|.|++.
T Consensus 334 dL~F~nAp~saSGLYVfVl~ 353 (540)
T PHA03282 334 NLQLRDASEASGGLYVCVVY 353 (540)
T ss_pred ceEecCCCcccCceEEEEEE
Confidence 79999999999999999986
No 467
>PF02480 Herpes_gE: Alphaherpesvirus glycoprotein E; InterPro: IPR003404 Glycoprotein E (gE) of Alphaherpesvirus forms a complex with glycoprotein I (gI), functioning as an immunoglobulin G (IgG) Fc binding protein. gE is involved in virus spread but is not essential for propagation [].; GO: 0016020 membrane; PDB: 2GJ7_F 2GIY_B.
Probab=32.39 E-value=39 Score=34.93 Aligned_cols=21 Identities=33% Similarity=0.431 Sum_probs=16.5
Q ss_pred eEEEccCCCCCCeEEEEEEEe
Q psy15127 124 SLQIENVGPQDEGLYICDVEN 144 (633)
Q Consensus 124 ~L~i~~v~~~d~G~Y~C~~~n 144 (633)
.|.|.|+..+++|.|.|++.-
T Consensus 270 ~l~f~~a~~~~sGLYv~V~~~ 290 (439)
T PF02480_consen 270 DLQFTNAPESASGLYVFVVYY 290 (439)
T ss_dssp SEEESS--GGG-EEEEEEEEE
T ss_pred ceEecCCCcccCceEEEEEEE
Confidence 799999999999999999973
No 468
>PF11049 KSHV_K1: Glycoprotein K1 of Kaposi's sarcoma-associated herpes virus; InterPro: IPR021022 This is a highly glycosylated cytoplasmic and membrane protein similar to the immunoglobulin receptor family that is expressed as an inducible early-lytic-cycle gene product in primary effusion lymphoma cell-lines. This domain would appear to be the cytoplasmic region of the protein [].
Probab=30.18 E-value=1.4e+02 Score=21.17 Aligned_cols=45 Identities=20% Similarity=0.317 Sum_probs=27.9
Q ss_pred EEEEeCCCCCCCCeEEEEECCEEeccCCCeeEEeccceeeeEEEeeeEEEEeecC
Q psy15127 180 LLECGPPKGQPEPTLHWKKNGQFIDLESSKSLDLSRRTLGWLRVRPLYWNVARPR 234 (633)
Q Consensus 180 ~l~C~~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~y~C~a~~~ 234 (633)
+|+|.. . ...-+.|+-||..+- .+...++....+.++|+|+....
T Consensus 2 tltC~s-~--~sLPiswYcN~TRLl-------Rlt~~Tlt~~~ltcNFtCV~qSG 46 (71)
T PF11049_consen 2 TLTCPS-N--ASLPISWYCNGTRLL-------RLTQQTLTVVTLTCNFTCVGQSG 46 (71)
T ss_pred ceecCC-C--CCCcccEEECCceee-------eecCCeEeeeeeeEEeeecCCCC
Confidence 577873 2 234578999887553 34445555666677777776443
No 469
>PF03921 ICAM_N: Intercellular adhesion molecule (ICAM), N-terminal domain; InterPro: IPR013768 Intercellular adhesion molecules (ICAMs) and vascular cell adhesion molecule-1 (VCAM-1) are part of the immunoglobulin superfamily. They are important in inflammation, immune responses and in intracellular signalling events []. The ICAM family consists of five members, designated ICAM-1 to ICAM-5. They are known to bind to leucocyte integrins CD11/CD18 during inflammation and in immune responses. In addition, ICAMs may exist in soluble forms in human plasma, due to activation and proteolysis mechanisms at cell surfaces. ICAM-1 (CD54) contains five Ig-like domains. It is expressed on leucocytes, endothelial and epithelial cells, and is upregulated in response to bacterial invasion. The protein is a ligand for lymphocyte-function associated (LFA) antigens and also a receptor for CD11a,b/CD18, fibrinogen, human rhinovirus and Plasmodium falciparum-infected erythrocytes. ICAM-1 binding sites for CD11a/CD18 and its other binding partners are located in the first domain and are overlapping. ICAM-1 domain 2 seems to play an important role in maintaining the conformation of domain 1 and particularly the structural integrity of the LFA-1 ligand-binding site []. The 3-dimensional atomic structure of the tandem N-terminal Ig-like domains (D1 and D2) of ICAM-1 has been determined to 2.2A resolution and fitted into a cryoelectron microscopy reconstruction of a rhinovirus-ICAM-1 complex []. Extensive charge interactions between ICAM-1 and human rhinovirusesare largely conserved in major and minor receptor groups of rhinoviruses. The interaction of ICAMs with LFA-1 is mediated by a divalent cation bound to the insertion (I)-domain on the alpha chain of LFA-1 and the carboxyl group of a conserved glutamic acid residue on ICAMs. ICAM-2 (CD102) has two Ig-like domains. It is expressed on endothelial cells, leucocytes and platelets, and binds to CD11a'b/CD18. The protein is refractory to proinflammatory cytokines, and plays an important role in the adhesion of leucocytes to the uninduced endothelium []. ICAM-3 (CD50) contains five Ig-like domains and binds to leucocyte integrins CD11a'd/CD18. The protein plays an important role in the immune response and perhaps in signal transduction []. ICAM-4 (LW blood group Ag) is red blood cell (RBC) specific and binds to CD11a'b/CD18. It is associated with the RBC Rh antigens and could be important in retaining immature red cells in the bone marrow, or in the uptake of senescent cells into the spleen []. ICAM-5 (telencephalin) has nine Ig-like domains and is confined to the telencephalon of the brain. The role of this CD11a/CD18 binding molecule is not yet known []. VCAM-1 was first described as a cytokine-inducible endothelial adhesion molecule. It can bind to leucocyte integrin VL-4 (very late antigen-4) to recruit leucocytes to sites of inflammation []. The predominant form of VCAM-1 in vivo has an N-terminal extracellular region comprising seven Ig-like domains []. A conserved integrin-binding motif has been identified in domains 1 and 4, variants of which are present in the N-terminal domain of all members of the integrin-binding subgroup of the immunoglobulin superfamily. The structure of a VLA-4-binding fragment comprising the first two domains of VCAM-1 has been determined to 1.8A resolution. The integrin-binding motif is exposed and forms the N-terminal region of the loop between beta-strands C and D of domain 1 []. VCAM-1 domains 1 and 2 are structurally similar to ICAM-1 and ICAM-2 []. This entry represents the N-terminal domain of ICAM proteins such as ICAM-2, ICAM-3 and ICAM-4.; PDB: 3BN3_B 1T0P_B 1ZXQ_A 3TCX_A 1MQ8_A 1Z7Z_I 1IC1_A 1IAM_A.
Probab=29.22 E-value=2.7e+02 Score=21.51 Aligned_cols=78 Identities=9% Similarity=0.009 Sum_probs=45.3
Q ss_pred ccceeEEecCCceEEEEEEEeeecCCeeEEEECCEEEEeccCCccceEEEccC--ceEEEcCCCCCCCeEEEEEEEeCCc
Q psy15127 245 KMASLLIWNHPRVNRLSCFAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQE--GTLRIQGVQKEDAGFFVCSALSVAG 322 (633)
Q Consensus 245 ~~~~~~~~~~g~~~~l~C~~~g~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~~--~~l~i~~~~~~d~G~Y~C~a~n~~g 322 (633)
..+...++..|+++.+.|...-.-+..+.|.-.-.... ..... ..+.+.+++. | ..-.|.+.-...
T Consensus 8 v~P~~~vV~~G~Sv~VNCStsC~~p~~~GLET~L~k~~----------~~~g~~W~~f~LsnV~~-d-s~~~C~~~C~g~ 75 (91)
T PF03921_consen 8 VSPEEPVVPPGGSVWVNCSTSCPQPEKIGLETSLSKTE----------LDSGPQWKAFQLSNVTE-D-SSPLCFFNCSGE 75 (91)
T ss_dssp EESSEEEEETTEEEEEEEEESSSS-SEEEEESSSEEEE----------EEEETTEEEEEEEEE-S-C-EEEEEEEEETTE
T ss_pred EECCccEECCCCCEEEEEcCCCCCCCcceEEEecCCcc----------cCCCCcEEEEEEEcccc-C-CeEEEEEEcCCe
Confidence 34566788999999999998443333444432211111 01111 1577888886 4 577899876544
Q ss_pred eeEEEEEEEEEe
Q psy15127 323 STTVRAFLQVRE 334 (633)
Q Consensus 323 ~~~~~~~l~v~~ 334 (633)
....++.|+|-.
T Consensus 76 Q~~~~~~ItVY~ 87 (91)
T PF03921_consen 76 QSSASANITVYK 87 (91)
T ss_dssp EEEEEEEEEEEB
T ss_pred EEEeEEeeEEeC
Confidence 446667777653
No 470
>PHA03282 envelope glycoprotein E; Provisional
Probab=26.75 E-value=1.2e+02 Score=30.88 Aligned_cols=25 Identities=20% Similarity=0.466 Sum_probs=21.5
Q ss_pred cccceEEEccCCCCCCeEEEEEEEe
Q psy15127 120 LDDRSLQIENVGPQDEGLYICDVEN 144 (633)
Q Consensus 120 ~~~~~L~i~~v~~~d~G~Y~C~~~n 144 (633)
..+++|.|.+++.+|+|.|+-.+..
T Consensus 121 ~~n~tl~l~~a~~~DsG~Y~L~~~~ 145 (540)
T PHA03282 121 VVNGTLVLREARETDSGMYVLSVSR 145 (540)
T ss_pred EecceEEEeeccccCCceEEEEecC
Confidence 3467899999999999999999743
No 471
>PHA03240 envelope glycoprotein M; Provisional
Probab=26.18 E-value=1.4e+02 Score=26.80 Aligned_cols=27 Identities=26% Similarity=0.384 Sum_probs=19.8
Q ss_pred eEEecCCcEEEEEeCCCCCCCCeEEEEE
Q psy15127 171 TRVASGETALLECGPPKGQPEPTLHWKK 198 (633)
Q Consensus 171 ~~~~~g~~~~l~C~~~~~~p~~~i~W~~ 198 (633)
....+|+.|+|.-. ....|...+.|++
T Consensus 33 vt~r~G~nVTLga~-~~lhpgq~v~Wy~ 59 (258)
T PHA03240 33 HTTREGDPLLLGGG-HGLGAGQKAHWYK 59 (258)
T ss_pred cccccCCceeeCCc-ccCCCCCEEEEEe
Confidence 45678999998765 3335777999987
No 472
>PF02440 Adeno_E3_CR1: Adenovirus E3 region protein CR1; InterPro: IPR003471 Early region 3 (E3) of human adenoviruses (Ads) codes for proteins that appear to control viral interactions with the host []. This region called CR1 (conserved region 1) [] is found three times in Human adenovirus 19 (a subgroup D virus) 49 Kd protein in the E3 region. CR1 is also found in the 20.1 Kd protein of subgroup B adenoviruses. The function of this 80 amino acid region is unknown. This region is probably a divergent immunoglobulin domain.
Probab=25.76 E-value=1.9e+02 Score=20.52 Aligned_cols=21 Identities=38% Similarity=0.656 Sum_probs=13.8
Q ss_pred EEcCCeEEEEEEEeccCCCeEEEEe
Q psy15127 83 VLSGSVVEFVCRVGGDPLPTILWRR 107 (633)
Q Consensus 83 ~~~G~~~~L~C~~~~~p~p~i~W~~ 107 (633)
+..|+.++|. |.+...++|+|
T Consensus 2 v~~G~N~TL~----Gp~~~~V~Wy~ 22 (63)
T PF02440_consen 2 VTVGSNVTLV----GPPDGPVTWYK 22 (63)
T ss_pred EeEcCcEEEe----CCCCCceEEEE
Confidence 4567777765 44445689984
No 473
>PF07353 Uroplakin_II: Uroplakin II; InterPro: IPR009952 This family contains uroplakin II, which is approximately 180 residues long and seems to be restricted to mammals. Uroplakin II is an integral membrane protein, and is one of the components of the apical plaques of mammalian urothelium formed by the asymmetric unit membrane - this is believed to play a role in strengthening the urothelial apical surface to prevent the cells from rupturing during bladder distension [].; GO: 0016044 cellular membrane organization, 0030176 integral to endoplasmic reticulum membrane
Probab=24.35 E-value=63 Score=27.44 Aligned_cols=24 Identities=29% Similarity=0.268 Sum_probs=19.4
Q ss_pred ccceEEeeccccceeEEEEEeccc
Q psy15127 601 TTTSYTVTHLRKFTKYEFFLVPFF 624 (633)
Q Consensus 601 ~~~~~~i~~L~~~t~Y~~~v~a~n 624 (633)
....|.+++|.||+.|.|+=...+
T Consensus 100 rlsaYqVtNL~pGTkY~isY~Vtk 123 (184)
T PF07353_consen 100 RLSAYQVTNLQPGTKYYISYLVTK 123 (184)
T ss_pred cceeEEeeccCCCcEEEEEEEEec
Confidence 356799999999999999876543
No 474
>PHA03189 UL14 tegument protein; Provisional
Probab=24.28 E-value=4e+02 Score=25.70 Aligned_cols=19 Identities=11% Similarity=0.029 Sum_probs=13.8
Q ss_pred EEecCCceEEEEEEEeeec
Q psy15127 250 LIWNHPRVNRLSCFAEGSP 268 (633)
Q Consensus 250 ~~~~~g~~~~l~C~~~g~p 268 (633)
..+..|+.+++.|.+-...
T Consensus 62 ~l~pyGdrvtVpC~fp~H~ 80 (348)
T PHA03189 62 LLVPYGDRVTVPCTFPTHD 80 (348)
T ss_pred cccCCCceeeeeeeecCCC
Confidence 4456789999999985443
No 475
>TIGR03000 plancto_dom_1 Planctomycetes uncharacterized domain TIGR03000. Domains described by this model are found, so far, only in the Planctomycetes (Pirellula sp. strain 1 and Gemmata obscuriglobus), in up to six proteins per genome, and may be duplicated within a protein. The function is unknown.
Probab=23.46 E-value=1.1e+02 Score=22.50 Aligned_cols=27 Identities=19% Similarity=0.367 Sum_probs=22.7
Q ss_pred cCCccceEEeeccccceeEEEEEeccc
Q psy15127 598 NAATTTSYTVTHLRKFTKYEFFLVPFF 624 (633)
Q Consensus 598 ~~~~~~~~~i~~L~~~t~Y~~~v~a~n 624 (633)
..+....|+-.+|++|..|..+|+|.-
T Consensus 24 ~~G~~R~F~T~~L~~G~~y~Y~v~a~~ 50 (75)
T TIGR03000 24 GTGTVRTFTTPPLEAGKEYEYTVTAEY 50 (75)
T ss_pred cCccEEEEECCCCCCCCEEEEEEEEEE
Confidence 445677899999999999999999853
No 476
>PF15096 G6B: G6B family
Probab=23.45 E-value=1.4e+02 Score=26.06 Aligned_cols=27 Identities=22% Similarity=0.243 Sum_probs=17.9
Q ss_pred CCCCCeEEEEEEEeCCceEEEEEEEEEEee
Q psy15127 131 GPQDEGLYICDVENLVGSISLRASLTVHLL 160 (633)
Q Consensus 131 ~~~d~G~Y~C~~~n~~g~~s~~~~l~V~~~ 160 (633)
...|+|+|.|..... .+....|.|..-
T Consensus 82 s~GDSGTFfCkGr~e---~ESRT~LhVLGD 108 (224)
T PF15096_consen 82 SAGDSGTFFCKGRQE---EESRTVLHVLGD 108 (224)
T ss_pred hcCCccceEecCccc---ccceeeeeeecc
Confidence 568999999995432 344556666643
No 477
>PHA03290 envelope glycoprotein I; Provisional
Probab=21.05 E-value=2.1e+02 Score=27.93 Aligned_cols=37 Identities=19% Similarity=0.222 Sum_probs=28.6
Q ss_pred eEEEccCCCCCCeEEEEEEEeCCceEEEEEEEEEEee
Q psy15127 124 SLQIENVGPQDEGLYICDVENLVGSISLRASLTVHLL 160 (633)
Q Consensus 124 ~L~i~~v~~~d~G~Y~C~~~n~~g~~s~~~~l~V~~~ 160 (633)
.|+|.+.+.+|+|.|.-++.-.....+.-+.|.+...
T Consensus 130 LL~I~~P~~~DSGiY~LRV~Ldga~~sDvF~lsv~Vy 166 (357)
T PHA03290 130 IFKINKPGIEDAGIYLLLVQLDHSRLFDGFFLGLNVY 166 (357)
T ss_pred EEEeCCCCcccCeeEEEEEEeCCCcccceEEEEEEEe
Confidence 6999999999999999999866544455566666544
No 478
>PHA03292 envelope glycoprotein I; Provisional
Probab=20.61 E-value=1.8e+02 Score=28.91 Aligned_cols=37 Identities=24% Similarity=0.238 Sum_probs=28.9
Q ss_pred ceEEEccCCCCCCeEEEEEEEeCCceEEEEEEEEEEe
Q psy15127 123 RSLQIENVGPQDEGLYICDVENLVGSISLRASLTVHL 159 (633)
Q Consensus 123 ~~L~i~~v~~~d~G~Y~C~~~n~~g~~s~~~~l~V~~ 159 (633)
-.|.|.+.+.+|+|.|.-++.-.......-+.|.+..
T Consensus 128 vLL~I~~P~~~DSGiY~LRV~Ldga~~aDvF~lsvfV 164 (413)
T PHA03292 128 VLLNITGPQPADSGAYILRVKLDHAPTADVFGLSAFV 164 (413)
T ss_pred eEEEeCCCCcccceeEEEEEEeCCCccCceeEEEEEE
Confidence 4699999999999999999987655555556655554
Done!