RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy15127
(633 letters)
>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL
structural protein; 3.30A {Oryctolagus cuniculus}
Length = 570
Score = 193 bits (491), Expect = 5e-54
Identities = 85/391 (21%), Positives = 138/391 (35%), Gaps = 63/391 (16%)
Query: 63 LIAKEALIKPFPISEPSDATVLSGSVVEFVCRVGGDPLPTILWRRDDGKMPTG----RAK 118
L+ KE + P + D G V F CR+ G + W +D + +
Sbjct: 93 LVIKERKLPPSFARKLKDVHETLGFPVAFECRINGSEPLQVSWYKDGELLKDDANLQTSF 152
Query: 119 ILDDRSLQIENVGPQDEGLYICDVENLVGSISLRASLTVHLLRD--DFRAEPKDTRVASG 176
I + +LQI G Y C N +G+ S A LT+ F +P +A G
Sbjct: 153 IHNVATLQILQTDQSHVGQYNCSASNPLGTASSSAKLTLSEHEVPPFFDLKPVSVDLALG 212
Query: 177 ETALLECGPPKGQPEPTLHWKKNGQFI--DLESSKSLDLSRRTLGWLRVRP----LY--- 227
E+ +C G + W K+ + I +L + TL L+V Y
Sbjct: 213 ESGTFKC-HVTGTAPIKITWAKDNREIRPGGNYKMTLVENTATLTVLKVTKGDAGQYTCY 271
Query: 228 -WNV---ARPRANLN----PRYIGRKMASLLIWNHPRVNRLSCFAEGSPLPSVFWTQEGS 279
NV A L PR+I + S ++ R C GSP V W ++ +
Sbjct: 272 ASNVAGKDSCSAQLGVQEPPRFIKKLEPSRIVKQDEHT-RYECKIGGSPEIKVLWYKDET 330
Query: 280 QVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVRE---FC 336
+ + + + V L + + ED+G + C A + AGS + L+V+E F
Sbjct: 331 E--IQESSKFRMSFVESVAVLEMYNLSVEDSGDYTCEAHNAAGSASSSTSLKVKEPPVFR 388
Query: 337 VLPK-------GTFTL-----GQPN--------------------LATGNSDLRRIACDL 364
P L G P ++ I ++
Sbjct: 389 KKPHPVETLKGADVHLECELQGTPPFQVSWHKDKRELRSGKKYKIMSENFLTSIHIL-NV 447
Query: 365 RETDSGLYTCTASSESGETSWSASLSVEPRP 395
D G Y C AS++ G + S++++ P
Sbjct: 448 DSADIGEYQCKASNDVGSDTCVGSITLKAPP 478
Score = 190 bits (485), Expect = 4e-53
Identities = 85/384 (22%), Positives = 132/384 (34%), Gaps = 64/384 (16%)
Query: 72 PFPISEPSDATVLSGSVVEFVCRVGGDPLPTILWRRDDGKMPTG---RAKILDDR-SLQI 127
P+ I G + C+V G P I W ++ K+ + + + ++ SL I
Sbjct: 6 PYFIEPLEHVEAAIGEPITLQCKVDGTPEIRIAWYKEHTKLRSAPAYKMQFKNNVASLVI 65
Query: 128 ENVGPQDEGLYICDVENLVGSISLRASLTV--HLLRDDFRAEPKDTRVASGETALLECGP 185
V D G Y C EN VG+++ A L + L F + KD G EC
Sbjct: 66 NKVDHSDVGEYTCKAENSVGAVASSAVLVIKERKLPPSFARKLKDVHETLGFPVAFEC-R 124
Query: 186 PKGQPEPTLHWKKNGQFIDLES--SKSLDLSRRTLGWLRVRP----LYWNVAR------- 232
G + W K+G+ + ++ S + TL L+ Y A
Sbjct: 125 INGSEPLQVSWYKDGELLKDDANLQTSFIHNVATLQILQTDQSHVGQYNCSASNPLGTAS 184
Query: 233 PRANLN------PRYIGRKMASLLIWNHPRVNRLSCFAEGSPLPSVFWTQEGSQVLMFPG 286
A L P + K S+ + C G+ + W ++ + PG
Sbjct: 185 SSAKLTLSEHEVPPFFDLKPVSVDLALGESG-TFKCHVTGTAPIKITWAKDN--REIRPG 241
Query: 287 NAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVRE---FCVLPKGTF 343
Y V TL + V K DAG + C A +VAG + A L V+E F + +
Sbjct: 242 GNYKMTLVENTATLTVLKVTKGDAGQYTCYASNVAGKDSCSAQLGVQEPPRFIKKLEPSR 301
Query: 344 TL-------------------------GQPNLATGNSDLRRIAC-------DLRETDSGL 371
+ + + + +L DSG
Sbjct: 302 IVKQDEHTRYECKIGGSPEIKVLWYKDETEIQESSKFRMSFVESVAVLEMYNLSVEDSGD 361
Query: 372 YTCTASSESGETSWSASLSVEPRP 395
YTC A + +G S S SL V+ P
Sbjct: 362 YTCEAHNAAGSASSSTSLKVKEPP 385
Score = 186 bits (475), Expect = 8e-52
Identities = 81/387 (20%), Positives = 126/387 (32%), Gaps = 63/387 (16%)
Query: 62 KLIAKEALIKPFPISEPSDATVLSGSVVEFVCRVGGDPLPTILWRRDDGKMP-TGRAKIL 120
KL E + PF +P + G F C V G I W +D+ ++ G K+
Sbjct: 188 KLTLSEHEVPPFFDLKPVSVDLALGESGTFKCHVTGTAPIKITWAKDNREIRPGGNYKMT 247
Query: 121 ---DDRSLQIENVGPQDEGLYICDVENLVGSISLRASLTVHLLRDDFRAEPKDTRVAS-G 176
+ +L + V D G Y C N+ G S A L V F + + +R+
Sbjct: 248 LVENTATLTVLKVTKGDAGQYTCYASNVAGKDSCSAQLGVQ-EPPRFIKKLEPSRIVKQD 306
Query: 177 ETALLECGPPKGQPEPTLHWKKNGQFIDLES--SKSLDLSRRTLGWLRVRP----LY--- 227
E EC G PE + W K+ I S S S L + Y
Sbjct: 307 EHTRYEC-KIGGSPEIKVLWYKDETEIQESSKFRMSFVESVAVLEMYNLSVEDSGDYTCE 365
Query: 228 -WNVA---RPRANLN----PRYIGRKMASLLIWNHPRVNRLSCFAEGSPLPSVFWTQEGS 279
N A +L P + + + L C +G+P V W ++
Sbjct: 366 AHNAAGSASSSTSLKVKEPPVFRKKPHPVETLKGAD--VHLECELQGTPPFQVSWHKDKR 423
Query: 280 QVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVRE---FC 336
++ G Y + ++ I V D G + C A + GS T + ++ F
Sbjct: 424 ELR--SGKKYKIMSENFLTSIHILNVDSADIGEYQCKASNDVGSDTCVGSITLKAPPRFV 481
Query: 337 VLPK-------GTFTL-----GQPNLA----------TGNSDLRRIACD----------L 364
L G ++ SD I+
Sbjct: 482 KKLSDISTVVGEEVQLQATIEGAEPISVAWFKDKGEIVRESDNIWISYSENIATLQFSRA 541
Query: 365 RETDSGLYTCTASSESGETSWSASLSV 391
++G YTC +E+G A+LSV
Sbjct: 542 EPANAGKYTCQIKNEAGTQECFATLSV 568
Score = 156 bits (396), Expect = 5e-41
Identities = 59/290 (20%), Positives = 102/290 (35%), Gaps = 35/290 (12%)
Query: 71 KPFPISEPSD-ATVLSGSVVEFVCRVGGDPLPTILWRRDDGKMPTG----RAKILDDRSL 125
P I + V + C++GG P +LW +D+ ++ + + L
Sbjct: 290 PPRFIKKLEPSRIVKQDEHTRYECKIGGSPEIKVLWYKDETEIQESSKFRMSFVESVAVL 349
Query: 126 QIENVGPQDEGLYICDVENLVGSISLRASLTVHLLRDDFRAEPKDTRVASGETALLECGP 185
++ N+ +D G Y C+ N GS S SL V FR +P G LEC
Sbjct: 350 EMYNLSVEDSGDYTCEAHNAAGSASSSTSLKVKE-PPVFRKKPHPVETLKGADVHLEC-E 407
Query: 186 PKGQPEPTLHWKKNGQFIDLESSKSLDLSRRTLGWLRVRPLYWN-------VARPRANLN 238
+G P + W K+ + + K +S L + + + A N
Sbjct: 408 LQGTPPFQVSWHKDKREL-RSGKKYKIMSENFLTSIHILNVDSADIGEYQCKAS-----N 461
Query: 239 PRYIGRKMASLLIWNHPRVNR--------------LSCFAEGSPLPSVFWTQEGSQVLMF 284
+ S+ + PR + L EG+ SV W ++ ++
Sbjct: 462 DVGSDTCVGSITLKAPPRFVKKLSDISTVVGEEVQLQATIEGAEPISVAWFKDK-GEIVR 520
Query: 285 PGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVRE 334
+ + TL+ + +AG + C + AG+ A L V E
Sbjct: 521 ESDNIWISYSENIATLQFSRAEPANAGKYTCQIKNEAGTQECFATLSVLE 570
Score = 84.9 bits (210), Expect = 2e-17
Identities = 37/176 (21%), Positives = 61/176 (34%), Gaps = 39/176 (22%)
Query: 259 RLSCFAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSAL 318
L C +G+P + W +E +++ AY +L I V D G + C A
Sbjct: 24 TLQCKVDGTPEIRIAWYKEHTKL--RSAPAYKMQFKNNVASLVINKVDHSDVGEYTCKAE 81
Query: 319 SVAGSTTVRAFLQVREFCVLPK-------GTFTLGQPNL----ATGN------------- 354
+ G+ A L ++E + P TLG P G+
Sbjct: 82 NSVGAVASSAVLVIKERKLPPSFARKLKDVHETLGFPVAFECRINGSEPLQVSWYKDGEL 141
Query: 355 ----SDLRRIACD---------LRETDSGLYTCTASSESGETSWSASLSVEPRPGP 397
++L+ ++ G Y C+AS+ G S SA L++ P
Sbjct: 142 LKDDANLQTSFIHNVATLQILQTDQSHVGQYNCSASNPLGTASSSAKLTLSEHEVP 197
Score = 42.1 bits (99), Expect = 5e-04
Identities = 13/44 (29%), Positives = 20/44 (45%)
Query: 363 DLRETDSGLYTCTASSESGETSWSASLSVEPRPGPHAVHRMPDS 406
+ +D G YTC A + G + SA L ++ R P + R
Sbjct: 67 KVDHSDVGEYTCKAENSVGAVASSAVLVIKERKLPPSFARKLKD 110
>2nzi_A Titin; IG-domain, FNIII-domain, transferase; 2.90A {Homo sapiens}
Length = 305
Score = 184 bits (470), Expect = 1e-53
Identities = 65/288 (22%), Positives = 95/288 (32%), Gaps = 59/288 (20%)
Query: 259 RLSCFAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSAL 318
L C G P P V W ++G +++ L I V +DA + A
Sbjct: 23 TLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGGYHQLIIASVTDDDATVYQVRAT 82
Query: 319 SVAGSTTVRAFLQVRE---------------FCVLPKGTFTL-----GQPNL-------- 350
+ GS + A L+V L ++ G+P+
Sbjct: 83 NQGGSVSGTASLEVEVPAKIHLPKTLEGMGAVHALRGEVVSIKIPFSGKPDPVITWQKGQ 142
Query: 351 ------------ATGNSDLRRIACDLRETDSGLYTCTASSESGETSWSASLSVEPRPGPH 398
T + + D+G Y A + G + L V P P
Sbjct: 143 DLIDNNGHYQVIVTRSFTSLVFPNGVERKDAGFYVVCAKNRFGIDQKTVELDVADVPDP- 201
Query: 399 AVHRMPDSGLFPGPPAAPVILNTTRGSVTLGWGEPEPRGGGVAPVIGYTVEYFSSDLQTG 458
P + + +R SV L W EP GG + + Y VE ++ +
Sbjct: 202 --------------PRGVKVSDVSRDSVNLTWTEPASDGG--SKITNYIVEKCATTAER- 244
Query: 459 WVVAAHRITSTSITVSDLKPDTSYMFIVRAENSHGLGIPSPVSPITRT 506
W+ + T TV +L TSY F V AEN GL PS S T T
Sbjct: 245 WLRVG-QARETRYTVINLFGKTSYQFRVIAENKFGLSKPSEPSEPTIT 291
Score = 116 bits (291), Expect = 7e-29
Identities = 36/162 (22%), Positives = 60/162 (37%), Gaps = 11/162 (6%)
Query: 75 ISEPSDATVLSGSVVEFVCRVGGDPLPTILWRRDDGKMPT--GRAKILDDR----SLQIE 128
E + V S VC+V G P P + W R ++ + +I + + L I
Sbjct: 8 KEELRNLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGGYHQLIIA 67
Query: 129 NVGPQDEGLYICDVENLVGSISLRASLTVH----LLRDDFRAEPKDTRVASGETALLECG 184
+V D +Y N GS+S ASL V + GE ++
Sbjct: 68 SVTDDDATVYQVRATNQGGSVSGTASLEVEVPAKIHLPKTLEGMGAVHALRGEVVSIKI- 126
Query: 185 PPKGQPEPTLHWKKNGQFIDLESSKSLDLSRRTLGWLRVRPL 226
P G+P+P + W+K ID + ++R + +
Sbjct: 127 PFSGKPDPVITWQKGQDLIDNNGHYQVIVTRSFTSLVFPNGV 168
Score = 87.1 bits (216), Expect = 5e-19
Identities = 39/201 (19%), Positives = 69/201 (34%), Gaps = 38/201 (18%)
Query: 163 DFRAEPKDTRVASGETALLECGPPKGQPEPTLHWKKNGQFIDLESSK-SLDLSRRTLGWL 221
F+ E ++ V A L C G P+P + W + G+ I + K + + L
Sbjct: 6 HFKEELRNLNVRYQSNATLVC-KVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGGYHQL 64
Query: 222 RVRPL-------YWNVARPRANLNPRYIGRKMASLLIWNHPRVN---------------- 258
+ + Y A N ASL + +++
Sbjct: 65 IIASVTDDDATVYQVRAT-----NQGGSVSGTASLEVEVPAKIHLPKTLEGMGAVHALRG 119
Query: 259 ---RLSCFAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGT--LRIQGVQKEDAGFF 313
+ G P P + W + + N + + VT+ T + GV+++DAGF+
Sbjct: 120 EVVSIKIPFSGKPDPVITWQKGQDLI---DNNGHYQVIVTRSFTSLVFPNGVERKDAGFY 176
Query: 314 VCSALSVAGSTTVRAFLQVRE 334
V A + G L V +
Sbjct: 177 VVCAKNRFGIDQKTVELDVAD 197
Score = 74.0 bits (182), Expect = 1e-14
Identities = 21/91 (23%), Positives = 32/91 (35%), Gaps = 5/91 (5%)
Query: 72 PFPISEPSDATVLSGSVVEFVCRVGGDPLPTILWRRDDGKM-PTGRAKILDDRS----LQ 126
P + L G VV G P P I W++ + G +++ RS +
Sbjct: 105 PKTLEGMGAVHALRGEVVSIKIPFSGKPDPVITWQKGQDLIDNNGHYQVIVTRSFTSLVF 164
Query: 127 IENVGPQDEGLYICDVENLVGSISLRASLTV 157
V +D G Y+ +N G L V
Sbjct: 165 PNGVERKDAGFYVVCAKNRFGIDQKTVELDV 195
>3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin
superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus
norvegicus}
Length = 403
Score = 186 bits (473), Expect = 4e-53
Identities = 83/389 (21%), Positives = 130/389 (33%), Gaps = 76/389 (19%)
Query: 71 KPFPISEPSDATVLSGSVVEFVCRV-GGDPLPTILWRRDDGKMPTG---RAKILDDRSLQ 126
+SEPSDA + G V C +P I W++D + G R + L + SL
Sbjct: 21 SLHFVSEPSDAVTMRGGNVLLNCSAESDRGVPVIKWKKDGLILALGMDDRKQQLPNGSLL 80
Query: 127 IENV-----GPQDEGLYICDVENLVGS--ISLRASLTVHLLRDDFRAEPKDTRVASGETA 179
I+N+ DEGLY C+ IS A + V F ++ + G+T
Sbjct: 81 IQNILHSRHHKPDEGLYQCEASLGDSGSIISRTAKVMVAGPL-RFLSQTESITAFMGDTV 139
Query: 180 LLECGPPKGQPEPTLHWKKNGQFIDL--ESSKSLDLSRRTL------------------- 218
LL+C G P PT+HW+KN Q ++ S+ + L L
Sbjct: 140 LLKC-EVIGDPMPTIHWQKNQQDLNPIPGDSRVVVLPSGALQISRLQPGDSGVYRCSARN 198
Query: 219 --GWLRVRPLYWNVARPRANLNPRYIGRKMASLLIWNHPRVNRLSCFAEGSPLPSVFWTQ 276
+ Y ++ ++++ L C G P PS W +
Sbjct: 199 PASTRTGNEAEVRILSDPGLHRQLYFLQRPSNVIAIEGKDA-VLECCVSGYPPPSFTWLR 257
Query: 277 EGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVRE-- 334
+ + + L I V +D+G + C + + A L V
Sbjct: 258 GEEVIQLRS----KKYSLLGGSNLLISNVTDDDSGTYTCVVTYKNENISASAELTVLVPP 313
Query: 335 -FCVLPK-------GTFTL-----------------GQPNLATG------NSDLRRIACD 363
F P G + + S+L RI
Sbjct: 314 WFLNHPSNLYAYESMDIEFECAVSGKPVPTVNWMKNGDVVIPSDYFQIVGGSNL-RIL-G 371
Query: 364 LRETDSGLYTCTASSESGETSWSASLSVE 392
+ ++D G Y C A +E+G SA L V
Sbjct: 372 VVKSDEGFYQCVAENEAGNAQSSAQLIVP 400
Score = 181 bits (460), Expect = 3e-51
Identities = 72/292 (24%), Positives = 104/292 (35%), Gaps = 39/292 (13%)
Query: 71 KPFPISEPSDATVLSGSVVEFVCRVGGDPLPTILWRRDDGKMPT----GRAKILDDRSLQ 126
+S+ T G V C V GDP+PTI W+++ + R +L +LQ
Sbjct: 121 PLRFLSQTESITAFMGDTVLLKCEVIGDPMPTIHWQKNQQDLNPIPGDSRVVVLPSGALQ 180
Query: 127 IENVGPQDEGLYICDVENLVGSI-SLRASLTVH-----LLRDDFRAEPKDTRVASGETAL 180
I + P D G+Y C N + A + + + F P + G+ A+
Sbjct: 181 ISRLQPGDSGVYRCSARNPASTRTGNEAEVRILSDPGLHRQLYFLQRPSNVIAIEGKDAV 240
Query: 181 LECGPPKGQPEPTLHWKKNGQFIDLESSKSLDLSRRTLGWLRVRP----LYWNVARPRAN 236
LEC G P P+ W + + I L S K L L V Y V
Sbjct: 241 LEC-CVSGYPPPSFTWLRGEEVIQLRSKKYSLLGGSNLLISNVTDDDSGTYTCVVT---- 295
Query: 237 LNPRYIGRKMASLLIWNHPRVN--------------RLSCFAEGSPLPSVFWTQEGSQVL 282
A L + P C G P+P+V W + G V+
Sbjct: 296 -YKNENISASAELTVLVPPWFLNHPSNLYAYESMDIEFECAVSGKPVPTVNWMKNGDVVI 354
Query: 283 MFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVRE 334
+ + LRI GV K D GF+ C A + AG+ A L V +
Sbjct: 355 -----PSDYFQIVGGSNLRILGVVKSDEGFYQCVAENEAGNAQSSAQLIVPK 401
Score = 123 bits (309), Expect = 1e-30
Identities = 67/317 (21%), Positives = 106/317 (33%), Gaps = 71/317 (22%)
Query: 143 ENLVGSISLRASLTVHL-LRDDFRAEPKDTRVASGETALLECGPPKGQPEPTLHWKKNGQ 201
+ + S L F +EP D G LL C + P + WKK+G
Sbjct: 4 GSELESSHHHHHHGGRRSLH--FVSEPSDAVTMRGGNVLLNCSAESDRGVPVIKWKKDGL 61
Query: 202 FIDL-ESSKSLDLSRRTLGWLRVRP---------LYWNVARPR---------ANLN---P 239
+ L + L +L + LY A A + P
Sbjct: 62 ILALGMDDRKQQLPNGSLLIQNILHSRHHKPDEGLYQCEASLGDSGSIISRTAKVMVAGP 121
Query: 240 RYIGRKMASLLIWNHPRVNRLSCFAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGT 299
+ S+ + V L C G P+P++ W + + PG+ + V G
Sbjct: 122 LRFLSQTESITAFMGDTV-LLKCEVIGDPMPTIHWQKNQQDLNPIPGD--SRVVVLPSGA 178
Query: 300 LRIQGVQKEDAGFFVCSALSVAGSTTVR-AFLQVRE---------FCVLPK-------GT 342
L+I +Q D+G + CSA + A + T A +++ F P
Sbjct: 179 LQISRLQPGDSGVYRCSARNPASTRTGNEAEVRILSDPGLHRQLYFLQRPSNVIAIEGKD 238
Query: 343 FTL-----GQP-------------------NLATGNSDLRRIACDLRETDSGLYTCTASS 378
L G P G S+L I+ ++ + DSG YTC +
Sbjct: 239 AVLECCVSGYPPPSFTWLRGEEVIQLRSKKYSLLGGSNL-LIS-NVTDDDSGTYTCVVTY 296
Query: 379 ESGETSWSASLSVEPRP 395
++ S SA L+V P
Sbjct: 297 KNENISASAELTVLVPP 313
Score = 63.3 bits (154), Expect = 8e-11
Identities = 38/184 (20%), Positives = 59/184 (32%), Gaps = 46/184 (25%)
Query: 259 RLSCFAEGS-PLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGV-----QKEDAGF 312
L+C AE +P + W ++G + G+L IQ + K D G
Sbjct: 40 LLNCSAESDRGVPVIKWKKDGLIL---ALGMDDRKQQLPNGSLLIQNILHSRHHKPDEGL 96
Query: 313 FVCSALSVAGSTTV--RAFLQVRE---FCVLPK-------GTFTL-----GQPN------ 349
+ C A + + A + V F + T L G P
Sbjct: 97 YQCEASLGDSGSIISRTAKVMVAGPLRFLSQTESITAFMGDTVLLKCEVIGDPMPTIHWQ 156
Query: 350 -----LATGNSDLRRIAC--------DLRETDSGLYTCTASSESGE-TSWSASLSVEPRP 395
L D R + L+ DSG+Y C+A + + T A + + P
Sbjct: 157 KNQQDLNPIPGDSRVVVLPSGALQISRLQPGDSGVYRCSARNPASTRTGNEAEVRILSDP 216
Query: 396 GPHA 399
G H
Sbjct: 217 GLHR 220
>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30,
N-terminal eight IG domains...; immunoglobulin domain;
HET: NAG NDG; 4.19A {Drosophila melanogaster}
Length = 816
Score = 193 bits (492), Expect = 8e-53
Identities = 94/495 (18%), Positives = 151/495 (30%), Gaps = 113/495 (22%)
Query: 71 KPFPISEPSDATVLSGSVVEFVCRVGGDPLPTILWRRDDGKMPTGRAKILDDR------S 124
K +++ T S + +C G P+P W + +A +L+DR +
Sbjct: 248 KVVSLAKFDMKTYSGSSTMALLCPAQGYPVPVFRWYKFIEGTTRKQAVVLNDRVKQVSGT 307
Query: 125 LQIENVGPQDEGLYICDVENLVGSISLRASLTVHL-LRDDFRAEPKDTRVASGETALLEC 183
L I++ +D G Y+C V N VG S+ LTV L + +P V G A+ C
Sbjct: 308 LIIKDAVVEDSGKYLCVVNNSVGGESVETVLTVTAPLS--AKIDPPTQTVDFGRPAVFTC 365
Query: 184 GPPKGQPEPTLHWKKNGQFIDLESSKSLDLSR--------------------RTLGWLRV 223
G P T+ W K+G+ I S L + L++
Sbjct: 366 -QYTGNPIKTVSWMKDGKAIG-HSESVLRIESVKKEDKGMYQCFVRNDRESAEASAELKL 423
Query: 224 RPLYWNVARPRANLNPRYIGRKMASLLIWNHPRVNRLSCFAEGSPLPSVFWTQEGSQVLM 283
+ +P I + + P V L C A G+P P + W +G ++
Sbjct: 424 GGRF----------DPPVIRQAFQEETMEPGPSV-FLKCVAGGNPTPEISWELDGKKIAN 472
Query: 284 ---FPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVRE---FCV 337
+ Y ++ L I V D G + C A S G A L V
Sbjct: 473 NDRYQVGQYVTVNGDVVSYLNITSVHANDGGLYKCIAKSKVGVAEHSAKLNVYGLPYIRQ 532
Query: 338 LPKGTFTLGQP---------------------NLATGNSDLR-------RIACDLRETDS 369
+ K G+ N + I R +D
Sbjct: 533 MEKKAIVAGETLIVTCPVAGYPIDSIVWERDNRALPINRKQKVFPNGTLIIENVERNSDQ 592
Query: 370 GLYTCTASSESGE-TSWSASLSVEPRPGPHAVHRMPDSGLFPGPPAAPVILNTTRGSVTL 428
YTC A ++ G S + V P + P + +TL
Sbjct: 593 ATYTCVAKNQEGYSARGSLEVQVMVLP----------RIIPFAFEEGPAQVG---QYLTL 639
Query: 429 GW---GEPEPR-------GGGVAPVIGYTVEYFSSDLQTGWVVAAHRITSTSITVSDLKP 478
G P G ++ +G T + +T+ ++
Sbjct: 640 HCSVPGGDLPLNIDWTLDGQAISEDLGITTSRVGRR-------------GSVLTIEAVEA 686
Query: 479 DTSYMFIVRAENSHG 493
+ F A N G
Sbjct: 687 SHAGNFTCHARNLAG 701
Score = 177 bits (449), Expect = 4e-47
Identities = 74/394 (18%), Positives = 123/394 (31%), Gaps = 71/394 (18%)
Query: 72 PFPISEPSDA-TVLSGSVVEFVCRVGGDPLPTILWRRDDGKM---PTGRAKILDDRSLQI 127
P + EP++ + + E C+ G+P+P I+W R DG G +I D L
Sbjct: 39 PVFLKEPTNRIDFSNSTGAEIECKASGNPMPEIIWIRSDGTAVGDVPGLRQISSDGKLVF 98
Query: 128 ENVGPQD------EGLYICDVENLVGSISLRASLTVHLLRDDFRAEPKDTRVASGETALL 181
+D +Y C N GSI R ++ + A+ V G +A++
Sbjct: 99 PPFRAEDYRQEVHAQVYACLARNQFGSIISRDVHVRAVVAQYYEADVNKEHVIRGNSAVI 158
Query: 182 ECGPPK--GQPEPTLHWKKNGQFIDLESSKSLD----LSRRTLGWLRVRP---------- 225
+C P + W + + ++ L L V P
Sbjct: 159 KCLIPSFVADFVEVVSWHTDEEENYFPGAEYDGKYLVLPSGELHIREVGPEDGYKSYQCR 218
Query: 226 ---------------LYWNVARPRANLNPRYIG-RKMASLLIWNHPRVNRLSCFAEGSPL 269
+ P ++ P+ + K + L C A+G P+
Sbjct: 219 TKHRLTGETRLSATKGRLVITEPISSAVPKVVSLAKFDMKTYSGSSTM-ALLCPAQGYPV 277
Query: 270 PSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRAF 329
P W + GTL I+ ED+G ++C + G +V
Sbjct: 278 PVFRWYKFIEGTTRKQAVVLNDRVKQVSGTLIIKDAVVEDSGKYLCVVNNSVGGESVETV 337
Query: 330 LQVRE---FCVLPK-------GTFTL-----GQPN-----------LATGNSDLRRIACD 363
L V + P G P + S L RI
Sbjct: 338 LTVTAPLSAKIDPPTQTVDFGRPAVFTCQYTGNPIKTVSWMKDGKAIGHSESVL-RIE-S 395
Query: 364 LRETDSGLYTCTASSESGETSWSASLSVEPRPGP 397
+++ D G+Y C ++ SA L + R P
Sbjct: 396 VKKEDKGMYQCFVRNDRESAEASAELKLGGRFDP 429
Score = 174 bits (443), Expect = 3e-46
Identities = 74/390 (18%), Positives = 136/390 (34%), Gaps = 82/390 (21%)
Query: 71 KPFPISEPSDATVLSGSVVEFVCRVGGDPLPTILWRRDDGKMPTGRAKILDDRSLQIENV 130
+P TV G F C+ G+P+ T+ W +D G+A + L+IE+V
Sbjct: 343 PLSAKIDPPTQTVDFGRPAVFTCQYTGNPIKTVSWMKD------GKAIGHSESVLRIESV 396
Query: 131 GPQDEGLYICDVENLVGSISLRASLTVHLLRDD--FRAEPKDTRVASGETALLECGPPKG 188
+D+G+Y C V N S A L + D R ++ + G + L+C G
Sbjct: 397 KKEDKGMYQCFVRNDRESAEASAELKLGGRFDPPVIRQAFQEETMEPGPSVFLKC-VAGG 455
Query: 189 QPEPTLHWKKNGQFID----LESSKSLDLSRRTLGWLRVRPL-------YWNVARPRANL 237
P P + W+ +G+ I + + + ++ + +L + + Y +A+
Sbjct: 456 NPTPEISWELDGKKIANNDRYQVGQYVTVNGDVVSYLNITSVHANDGGLYKCIAK----- 510
Query: 238 NPRYIGRKMASLLIWNHPRVN-------------RLSCFAEGSPLPSVFWTQEGSQVLMF 284
+ + A L ++ P + ++C G P+ S+ W ++ +
Sbjct: 511 SKVGVAEHSAKLNVYGLPYIRQMEKKAIVAGETLIVTCPVAGYPIDSIVWERDNRAL--- 567
Query: 285 PGNAYGHLHVTQEGTLRIQGVQK-EDAGFFVCSALSVAG-STTVRAFLQVRE-------- 334
V GTL I+ V++ D + C A + G S +QV
Sbjct: 568 --PINRKQKVFPNGTLIIENVERNSDQATYTCVAKNQEGYSARGSLEVQVMVLPRIIPFA 625
Query: 335 ---FCVLPKGTFTL------------------GQPNLATGNSDLRRIA--------CDLR 365
TL GQ R+ +
Sbjct: 626 FEEGPAQVGQYLTLHCSVPGGDLPLNIDWTLDGQAISEDLGITTSRVGRRGSVLTIEAVE 685
Query: 366 ETDSGLYTCTASSESGETSWSASLSVEPRP 395
+ +G +TC A + +G ++ L+V P
Sbjct: 686 ASHAGNFTCHARNLAGHQQFTTPLNVYVPP 715
Score = 174 bits (442), Expect = 3e-46
Identities = 78/404 (19%), Positives = 133/404 (32%), Gaps = 83/404 (20%)
Query: 66 KEALIKPFPISEPSDATVLSGSVVEFVCRVGGDPLPTILWRRDDGKMPT-GRAKILDD-- 122
P + T+ G V C GG+P P I W D K+ R ++
Sbjct: 424 GGRFDPPVIRQAFQEETMEPGPSVFLKCVAGGNPTPEISWELDGKKIANNDRYQVGQYVT 483
Query: 123 ------RSLQIENVGPQDEGLYICDVENLVGSISLRASLTVHLLRDDFRAEPKDTRVASG 176
L I +V D GLY C ++ VG A L V+ L + + + + +G
Sbjct: 484 VNGDVVSYLNITSVHANDGGLYKCIAKSKVGVAEHSAKLNVYGLP--YIRQMEKKAIVAG 541
Query: 177 ETALLECGPPKGQPEPTLHWKKNGQFIDLESSKSLDLSRRTLGWLRVRPLYW-------- 228
ET ++ C P G P ++ W+++ + + + + + + G L + +
Sbjct: 542 ETLIVTC-PVAGYPIDSIVWERDNRALPINRKQKVFPN----GTLIIENVERNSDQATYT 596
Query: 229 --------NVARPRANLN----PRYIGRKMASLLIWNHPRVNRLSCFAEGSPLP-SVFWT 275
AR + PR I + L C G LP ++ WT
Sbjct: 597 CVAKNQEGYSARGSLEVQVMVLPRIIPFAFEEGPAQVGQYL-TLHCSVPGGDLPLNIDWT 655
Query: 276 QEGSQVLMFPGNAYGHLHVTQE-GTLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVRE 334
+G + V + L I+ V+ AG F C A ++AG L V
Sbjct: 656 LDGQAIS--EDLGITTSRVGRRGSVLTIEAVEASHAGNFTCHARNLAGHQQFTTPLNVYV 713
Query: 335 ---FCVLPK-------GTFTL-----GQP------------------------NLATGNS 355
+ + P + G P N+
Sbjct: 714 PPRWILEPTDKAFAQGSDAKVECKADGFPKPQVTWKKAVGDTPGEYKDLKKSDNIRVEEG 773
Query: 356 DLRRIACDLRETDSGLYTCTASSESGETSWSAS-LSVEPRPGPH 398
L + ++++T+ G Y C A + G + +SV+ H
Sbjct: 774 TL-HVD-NIQKTNEGYYLCEAINGIGSGLSAVIMISVQAHHHHH 815
Score = 158 bits (402), Expect = 5e-41
Identities = 71/428 (16%), Positives = 128/428 (29%), Gaps = 97/428 (22%)
Query: 67 EALIKPFPISEPSDATVLSGSVVEFVCRV---GGDPLPTILWRRDDGKMPT------GRA 117
A++ + ++ + V+ G+ C + D + + W D+ + G+
Sbjct: 134 RAVVAQYYEADVNKEHVIRGNSAVIKCLIPSFVADFVEVVSWHTDEEENYFPGAEYDGKY 193
Query: 118 KILDDRSLQIENVGPQD-EGLYICDVENLVGSISLRASLTVHLLRDD----------FRA 166
+L L I VGP+D Y C ++ + + ++ L+ + A
Sbjct: 194 LVLPSGELHIREVGPEDGYKSYQCRTKHRLTGETRLSATKGRLVITEPISSAVPKVVSLA 253
Query: 167 EPKDTRVASGETALLECGPPKGQPEPTLHWKKNGQFI----DLESSKSLDLSRRTLGWLR 222
+ + T L C P +G P P W K + + + + TL
Sbjct: 254 KFDMKTYSGSSTMALLC-PAQGYPVPVFRWYKFIEGTTRKQAVVLNDRVKQVSGTLIIKD 312
Query: 223 VRP----LY----WNV---ARPRANLN---PRYIGRKMASLLIWNHPRVNRLSCFAEGSP 268
Y N L P + + +C G+P
Sbjct: 313 AVVEDSGKYLCVVNNSVGGESVETVLTVTAPLSAKIDPPTQTVDFGRPA-VFTCQYTGNP 371
Query: 269 LPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRA 328
+ +V W ++G + E LRI+ V+KED G + C + S A
Sbjct: 372 IKTVSWMKDGKAI------------GHSESVLRIESVKKEDKGMYQCFVRNDRESAEASA 419
Query: 329 FLQVREFC-------------VLPKGTFTL-----------------GQPNLATGNSDLR 358
L++ + P + L G+ +
Sbjct: 420 ELKLGGRFDPPVIRQAFQEETMEPGPSVFLKCVAGGNPTPEISWELDGKKIANNDRYQVG 479
Query: 359 RIAC------------DLRETDSGLYTCTASSESGETSWSASLSVEPRPGPHAVHRMPDS 406
+ + D GLY C A S+ G SA L+V P + +M
Sbjct: 480 QYVTVNGDVVSYLNITSVHANDGGLYKCIAKSKVGVAEHSAKLNVYGLP---YIRQMEKK 536
Query: 407 GLFPGPPA 414
+ G
Sbjct: 537 AIVAGETL 544
Score = 103 bits (259), Expect = 3e-23
Identities = 71/448 (15%), Positives = 117/448 (26%), Gaps = 114/448 (25%)
Query: 125 LQIENVGPQDEGLYICDVENLVGSISLRASLTVHLLRD-DFRAEPKDT-RVASGETALLE 182
+ + N + L+ GS +L A+ + F EP + ++ A +E
Sbjct: 1 MNMPNERLKWLMLFAAVALIACGSQTLAANPPDADQKGPVFLKEPTNRIDFSNSTGAEIE 60
Query: 183 CGPPKGQPEPTLHW-KKNGQFIDLESSKSLDLSRRTLGWLRVRP----------LYWNVA 231
C G P P + W + +G + S L + R +Y +A
Sbjct: 61 C-KASGNPMPEIIWIRSDGTAVGDVPGLRQISSDGKLVFPPFRAEDYRQEVHAQVYACLA 119
Query: 232 R--------PRANLNPRYIGRKMASLLIWNHPRVNR-----LSCFAE---GSPLPSVFWT 275
R ++ A + N V R + C + V W
Sbjct: 120 RNQFGSIISRDVHVRAVVAQYYEADV---NKEHVIRGNSAVIKCLIPSFVADFVEVVSWH 176
Query: 276 QEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDA-GFFVCSALSVAGSTTVRAFLQVRE 334
+ + G V G L I+ V ED + C T + + R
Sbjct: 177 TDEEENYFPGAEYDGKYLVLPSGELHIREVGPEDGYKSYQCRTKHRLTGETRLSATKGRL 236
Query: 335 FCVLPKG---------------------TFTL-----GQP----------------NLAT 352
P T L G P
Sbjct: 237 VITEPISSAVPKVVSLAKFDMKTYSGSSTMALLCPAQGYPVPVFRWYKFIEGTTRKQAVV 296
Query: 353 GNSDLRRIACDL-----RETDSGLYTCTASSESGETSWSASLSVEPRPGPHAVHRMPDSG 407
N +++++ L DSG Y C ++ G S L+V A P
Sbjct: 297 LNDRVKQVSGTLIIKDAVVEDSGKYLCVVNNSVGGESVETVLTVTAP--LSAKIDPPTQT 354
Query: 408 LFPGPPAAPVILNTTRGSVTLGWGEPEPRGGGVAPVIGYTVEYFSSDLQTGWVVAAHRIT 467
+ G P + T G P TV W+ I
Sbjct: 355 VDFG---RPAVFTCQ---YT---GNPIK-----------TVS---------WMKDGKAIG 385
Query: 468 ST--SITVSDLKPDTSYMFIVRAENSHG 493
+ + + +K + M+ N
Sbjct: 386 HSESVLRIESVKKEDKGMYQCFVRNDRE 413
>1bih_A Hemolin; insect immunity, LPS-binding, homophilic adhesion; 3.10A
{Hyalophora cecropia} SCOP: b.1.1.4 b.1.1.4 b.1.1.4
b.1.1.4
Length = 395
Score = 183 bits (465), Expect = 6e-52
Identities = 61/391 (15%), Positives = 102/391 (26%), Gaps = 72/391 (18%)
Query: 71 KPFPISEPSDATVLSGSVVEFVCRVGGDPLPT-ILWRRDDGKMPTG---RAKILDDRSLQ 126
P +P++ + C + G+ W++D A D+ SL
Sbjct: 6 YPVLKDQPAEVLFRENNPTVLECIIEGNDQGVKYSWKKDGKSYNWQEHNAALRKDEGSLV 65
Query: 127 IENVGPQDEGLYICDVENLVGSI-SLRASLTVHLLRDDFRAEPKDTRVASGETALLECGP 185
DEG Y C E G S S L A+ + G L+C
Sbjct: 66 FLRPQASDEGHYQCFAETPAGVASSRVISFRKTYLIA-SPAKTHEKTPIEGRPFQLDCVL 124
Query: 186 PKGQPEPTLHWKKNGQFIDLESSKSLDLSRRTL---GWLRVR------------------ 224
P P+P + WKK D + + R T G L
Sbjct: 125 PNAYPKPLITWKKRLSGADPNADVTDFDRRITAGPDGNLYFTIVTKEDVSDIYKYVCTAK 184
Query: 225 -------------PLYWNVARPRANLNPRYIGRKMASLLIWNHPRVNRLSCFAEGSPLPS 271
+ ++ + C +P+
Sbjct: 185 NAAVDEEVVLVEYEIKGVTKDNSGYKGEPVPQYVSKDMMAKAGDVT-MIYCMYGSNPMGY 243
Query: 272 VFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVR-AFL 330
+ + G V P + + T L + ED G + C + G L
Sbjct: 244 PNYFKNGKDVNGNPEDRITRHNRTSGKRLLFKTTLPEDEGVYTCEVDNGVGKPQKHSLKL 303
Query: 331 QVRE---FCVLPKGTFTL-------------GQP--------NLATGNSDLRRIA----- 361
V + P+ + G P N + +
Sbjct: 304 TVVSAPKYEQKPEKVIVVKQGQDVTIPCKVTGLPAPNVVWSHNAKPLSGGRATVTDSGLV 363
Query: 362 -CDLRETDSGLYTCTASSESGETSWSASLSV 391
++ D G Y C A++E G+ + + V
Sbjct: 364 IKGVKNGDKGYYGCRATNEHGDKYFETLVQV 394
Score = 88.8 bits (220), Expect = 5e-19
Identities = 25/89 (28%), Positives = 37/89 (41%), Gaps = 2/89 (2%)
Query: 71 KPFPISEPSDATVLS-GSVVEFVCRVGGDPLPTILWRRDDGKMPTGRAKILDDRSLQIEN 129
P +P V+ G V C+V G P P ++W + + GRA + D L I+
Sbjct: 308 APKYEQKPEKVIVVKQGQDVTIPCKVTGLPAPNVVWSHNAKPLSGGRATVTDS-GLVIKG 366
Query: 130 VGPQDEGLYICDVENLVGSISLRASLTVH 158
V D+G Y C N G + V+
Sbjct: 367 VKNGDKGYYGCRATNEHGDKYFETLVQVN 395
Score = 81.9 bits (202), Expect = 7e-17
Identities = 51/307 (16%), Positives = 86/307 (28%), Gaps = 81/307 (26%)
Query: 164 FRAEPKDTRVASGETALLECGPPKGQPEPT-LHWKKNGQFIDL-ESSKSLDLSRRTLGWL 221
+ +P + +LEC +G + WKK+G+ + E + +L +L +L
Sbjct: 9 LKDQPAEVLFRENNPTVLEC-IIEGNDQGVKYSWKKDGKSYNWQEHNAALRKDEGSLVFL 67
Query: 222 RVRP----LYWNVARPRANLNP------RYIGRKMASLLIWNHPRVN---------RLSC 262
R + Y A P R I + L+ +L C
Sbjct: 68 RPQASDEGHYQCFAE-----TPAGVASSRVISFRKTYLIASPAKTHEKTPIEGRPFQLDC 122
Query: 263 -FAEGSPLPSVFWTQEGSQVLM--FPGNAYGHLHVTQEGTLRIQGVQKEDA---GFFVCS 316
P P + W + S + + +G L V KED +VC+
Sbjct: 123 VLPNAYPKPLITWKKRLSGADPNADVTDFDRRITAGPDGNLYFTIVTKEDVSDIYKYVCT 182
Query: 317 ALSVAGSTTVR-AFLQVREFCVLPKG-----TFTLGQPNL-------------ATGN--- 354
A + A V +++ G ++ N
Sbjct: 183 AKNAAVDEEVVLVEYEIKGVTKDNSGYKGEPVPQYVSKDMMAKAGDVTMIYCMYGSNPMG 242
Query: 355 -------------SDLRRIAC------------DLRETDSGLYTCTASSESGE-TSWSAS 388
+ RI D G+YTC + G+ S
Sbjct: 243 YPNYFKNGKDVNGNPEDRITRHNRTSGKRLLFKTTLPEDEGVYTCEVDNGVGKPQKHSLK 302
Query: 389 LSVEPRP 395
L+V P
Sbjct: 303 LTVVSAP 309
Score = 66.5 bits (162), Expect = 7e-12
Identities = 42/330 (12%), Positives = 78/330 (23%), Gaps = 84/330 (25%)
Query: 259 RLSCFAEGSPLPSVF-WTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSA 317
L C EG+ + W ++G + + EG+L Q D G + C A
Sbjct: 25 VLECIIEGNDQGVKYSWKKDGKS---YNWQEHNAALRKDEGSLVFLRPQASDEGHYQCFA 81
Query: 318 LSVAGSTTVR-AFLQV---REFCVLPK-------GTFTL------GQP--------NLAT 352
+ AG + R + F L P L+
Sbjct: 82 ETPAGVASSRVISFRKTYLIASPAKTHEKTPIEGRPFQLDCVLPNAYPKPLITWKKRLSG 141
Query: 353 GNSDLRRIACDLR------------------ETDSGLYTCTASSESGET-SWSASLSVEP 393
+ + D R +D Y CTA + + + ++
Sbjct: 142 ADPNADVTDFDRRITAGPDGNLYFTIVTKEDVSDIYKYVCTAKNAAVDEEVVLVEYEIKG 201
Query: 394 RPGPHAVHRMPDSGLFPGPPAAPVILNTTRG-SVTL---GWGEPEP-----RGGGVAPVI 444
++ ++ P P + G + P + G
Sbjct: 202 VTKDNSGYKGE-----PVPQYVSKDMMAKAGDVTMIYCMYGSNPMGYPNYFKNGKDVNGN 256
Query: 445 GYTVEYFSSDLQTGWVVAAHRITSTSITVSDLKPDTSYMFIVRAENSHGLGIPSPVSPIT 504
+ + P+ ++ +N G P
Sbjct: 257 PEDRITRHNRTSGK-----------RLLFKTTLPEDEGVYTCEVDNGVG-------KPQK 298
Query: 505 RTLGLNSLVP----QHLLDEARARLGTKVV 530
+L L + Q + G V
Sbjct: 299 HSLKLTVVSAPKYEQKPEKVIVVKQGQDVT 328
>3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor
protein tyrosine phosphatase; HET: NAG; 2.00A {Mus
musculus} PDB: 3jxa_A*
Length = 384
Score = 181 bits (462), Expect = 1e-51
Identities = 82/381 (21%), Positives = 124/381 (32%), Gaps = 72/381 (18%)
Query: 75 ISEPSDATV---LSGSVVEFVCRVGGDPLPTILWRRDDGKMPTGRAK--ILDDRSLQIEN 129
+ EPS V+ C V G+P P I W+ + + G + D SL I N
Sbjct: 9 VQEPSHVMFPLDSEEKKVKLSCEVKGNPKPHIRWKLNGTDVDIGMDFRYSVVDGSLLINN 68
Query: 130 VG-PQDEGLYICDVENLVGSI-SLRASLTVHLLRDDFRAEPKDTRVASGETALLECGPPK 187
QD G Y C N G+I S A L L + V G+ +L CGPP
Sbjct: 69 PNKTQDAGTYQCIATNSFGTIVSREAKLQFAYLENFKTRTRSTVSVRRGQGMVLLCGPPP 128
Query: 188 GQPEPTLHWKKNGQFIDLESSKSLDLSRRTLGWLRVRP---------------------- 225
E + W N ++ + + L +V
Sbjct: 129 HSGELSYAWIFNEYPSYQDNRRFVSQETGNLYIAKVEKSDVGNYTCVVTNTVTNHKVLGP 188
Query: 226 ---LYWNVARPRANLNPRYIGRKMASLLIWNHPRVNRLSCFAEGSPLPSVFWTQEGSQVL 282
L P+ + ++ V +L CFA G+P+P++ W + + +
Sbjct: 189 PTPLILRNDGVMGEYEPKIEVQFPETVPAEKGTTV-KLECFALGNPVPTILWRRADGKPI 247
Query: 283 MFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVRE---FCVLP 339
A H G L I Q+EDAG + C A + G + L + +
Sbjct: 248 --ARKARRHKS---NGILEIPNFQQEDAGSYECVAENSRGKNVAKGQLTFYAQPNWVQII 302
Query: 340 K-------GTFTL-----------------GQPNLATG-----NSDLRRIACDLRETDSG 370
+ G P L L I + +D+G
Sbjct: 303 NDIHVAMEESVFWECKANGRPKPTYRWLKNGDPLLTRDRIQIEQGTL-NIT-IVNLSDAG 360
Query: 371 LYTCTASSESGETSWSASLSV 391
+Y C A ++ G SA LSV
Sbjct: 361 MYQCVAENKHGVIFSSAELSV 381
Score = 149 bits (379), Expect = 5e-40
Identities = 62/293 (21%), Positives = 98/293 (33%), Gaps = 38/293 (12%)
Query: 68 ALIKPFPISEPSDATVLSGSVVEFVCRV-GGDPLPTILWRRDDGKMPT--GRAKILDDRS 124
A ++ F S +V G + +C + W ++ R + +
Sbjct: 99 AYLENFKTRTRSTVSVRRGQGMVLLCGPPPHSGELSYAWIFNEYPSYQDNRRFVSQETGN 158
Query: 125 LQIENVGPQDEGLYICDVENLVGSISLRASLTVHLLRDD----------FRAEPKDTRVA 174
L I V D G Y C V N V + + T +LR+D P+
Sbjct: 159 LYIAKVEKSDVGNYTCVVTNTVTNHKVLGPPTPLILRNDGVMGEYEPKIEVQFPETVPAE 218
Query: 175 SGETALLECGPPKGQPEPTLHWKK-NGQFIDLESSKSLDLSRRTLGWLRVRP----LY-- 227
G T LEC G P PT+ W++ +G+ + S L + Y
Sbjct: 219 KGTTVKLEC-FALGNPVPTILWRRADGK--PIARKARRHKSNGILEIPNFQQEDAGSYEC 275
Query: 228 --WN---VARPRANLN---PRYIGRKMASLLIWNHPRVNRLSCFAEGSPLPSVFWTQEGS 279
N + L + + + + V C A G P P+ W + G
Sbjct: 276 VAENSRGKNVAKGQLTFYAQPNWVQIINDIHVAMEESV-FWECKANGRPKPTYRWLKNGD 334
Query: 280 QVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQV 332
+L + + ++GTL I V DAG + C A + G A L V
Sbjct: 335 PLL-----TRDRIQI-EQGTLNITIVNLSDAGMYQCVAENKHGVIFSSAELSV 381
Score = 94.9 bits (236), Expect = 4e-21
Identities = 66/406 (16%), Positives = 104/406 (25%), Gaps = 118/406 (29%)
Query: 164 FRAEPKDTRV---ASGETALLECGPPKGQPEPTLHWKKNGQFIDLESSKSLDLSRRTLGW 220
F EP + + L C KG P+P + WK NG +D+ + +L
Sbjct: 8 FVQEPSHVMFPLDSEEKKVKLSC-EVKGNPKPHIRWKLNGTDVDIGMDFRYSVVDGSLLI 66
Query: 221 LRVRPL-----YWNVAR--------PRANLNPRYIGRKMASLLIWNHPRVN--------- 258
Y +A A L Y+ R
Sbjct: 67 NNPNKTQDAGTYQCIATNSFGTIVSREAKLQFAYLEN------FKTRTRSTVSVRRGQGM 120
Query: 259 RLSCFA-EGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSA 317
L C S S W + N + G L I V+K D G + C
Sbjct: 121 VLLCGPPPHSGELSYAWIFNEYPS--YQDN--RRFVSQETGNLYIAKVEKSDVGNYTCVV 176
Query: 318 LSVAGSTTVR---AFLQVRE------------------FCVLPKGTFTL-----GQP--- 348
+ + V L +R T L G P
Sbjct: 177 TNTVTNHKVLGPPTPLILRNDGVMGEYEPKIEVQFPETVPAEKGTTVKLECFALGNPVPT 236
Query: 349 --------NLATGNSDLRRIACDLR-----ETDSGLYTCTASSESGETSWSASLSVEPRP 395
+ + L + D+G Y C A + G+ L+ +
Sbjct: 237 ILWRRADGKPIARKARRHKSNGILEIPNFQQEDAGSYECVAENSRGKNVAKGQLTFYAQ- 295
Query: 396 GPHAVHRMPDSGLFPGPPAAPVILNTTRGSVTLG---WGEPEP-----RGGGVAPVIGYT 447
P+ V + D + SV G P+P + G
Sbjct: 296 -PNWVQIINDIHVAME------------ESVFWECKANGRPKPTYRWLKNGDPLLTRDR- 341
Query: 448 VEYFSSDLQTGWVVAAHRITSTSITVSDLKPDTSYMFIVRAENSHG 493
+I ++ ++ + + M+ AEN HG
Sbjct: 342 ----------------IQIEQGTLNITIVNLSDAGMYQCVAENKHG 371
Score = 89.1 bits (221), Expect = 3e-19
Identities = 25/88 (28%), Positives = 38/88 (43%)
Query: 71 KPFPISEPSDATVLSGSVVEFVCRVGGDPLPTILWRRDDGKMPTGRAKILDDRSLQIENV 130
+P + +D V V + C+ G P PT W ++ + T ++ +L I V
Sbjct: 295 QPNWVQIINDIHVAMEESVFWECKANGRPKPTYRWLKNGDPLLTRDRIQIEQGTLNITIV 354
Query: 131 GPQDEGLYICDVENLVGSISLRASLTVH 158
D G+Y C EN G I A L+V
Sbjct: 355 NLSDAGMYQCVAENKHGVIFSSAELSVI 382
>1qz1_A Neural cell adhesion molecule 1, 140 kDa isoform; IG modules, NCAM;
2.00A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4
PDB: 1ie5_A
Length = 291
Score = 178 bits (453), Expect = 2e-51
Identities = 66/286 (23%), Positives = 106/286 (37%), Gaps = 35/286 (12%)
Query: 77 EPSDATVLSGSVVEFVCRVGGDPL-PTILWRRDDGKM---PTGRAKIL----DDRSLQIE 128
PS + G F+C+V GD I W +G+ R ++ D +L I
Sbjct: 8 VPSQGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDDDSSTLTIY 67
Query: 129 NVGPQDEGLYICDVENLVGSI-SLRASLTVHLLRDDFRAEPKDTRVASGETALLECGPPK 187
N D G+Y C V G+ ++ + + F+ P GE A++ C
Sbjct: 68 NANIDDAGIYKCVVTAEDGTQSEATVNVKIFQ-KLMFKNAPTPQEFKEGEDAVIVC-DVV 125
Query: 188 GQPEPTLHWKKNGQFIDLESS-KSLDLSRRTLGWLRVRPL----YWNVARPRANLNPRYI 242
PT+ WK G+ + L+ + + LS L ++ Y R L I
Sbjct: 126 SSLPPTIIWKHKGRDVILKKDVRFIVLSNNYLQIRGIKKTDEGTYRCEGR---ILARGEI 182
Query: 243 GRKMASLLIWNHPRVN----------------RLSCFAEGSPLPSVFWTQEGSQVLMFPG 286
K +++ P V L C A+G P P++ WT++G +
Sbjct: 183 NFKDIQVIVNVPPTVQARQSIVNATANLGQSVTLVCDADGFPEPTMSWTKDGEPIENEEE 242
Query: 287 NAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQV 332
+ H+ L I+ V K D +VC A + AG L+V
Sbjct: 243 DDEKHIFSDDSSELTIRNVDKNDEAEYVCIAENKAGEQDASIHLKV 288
Score = 123 bits (310), Expect = 2e-31
Identities = 36/146 (24%), Positives = 54/146 (36%), Gaps = 7/146 (4%)
Query: 71 KPFPISEPSDATVLSGSVVEFVCRVGGDPLPTILWRRDDGKMPT---GRAKILDDRSLQI 127
K + P+ G VC V PTI+W+ + R +L + LQI
Sbjct: 100 KLMFKNAPTPQEFKEGEDAVIVCDVVSSLPPTIIWKHKGRDVILKKDVRFIVLSNNYLQI 159
Query: 128 ENVGPQDEGLYICDVENLVGSISLRASLTVHLL---RDDFRAEPKDTRVASGETALLECG 184
+ DEG Y C+ L + V + R + G++ L C
Sbjct: 160 RGIKKTDEGTYRCEGRILARGEINFKDIQVIVNVPPTVQARQSIVNATANLGQSVTLVC- 218
Query: 185 PPKGQPEPTLHWKKNGQFIDLESSKS 210
G PEPT+ W K+G+ I+ E
Sbjct: 219 DADGFPEPTMSWTKDGEPIENEEEDD 244
Score = 105 bits (264), Expect = 2e-25
Identities = 42/294 (14%), Positives = 78/294 (26%), Gaps = 70/294 (23%)
Query: 164 FRAEPKDTRVASGETALLECGPPKGQPEPTLHWKK-NGQFIDLESSKSLDLSRRTLGW-L 221
P ++ GE+ C + + W NG+ + + + L
Sbjct: 5 VDIVPSQGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDDDSSTL 64
Query: 222 RVRPLYWNVARP-------RANLNPRYIGRKMASLLIWNHPRVNR--------------L 260
+ N ++ I+ +
Sbjct: 65 TIY----NANIDDAGIYKCVVTAEDGTQSEATVNVKIFQKLMFKNAPTPQEFKEGEDAVI 120
Query: 261 SCFAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSV 320
C S P++ W +G V++ V L+I+G++K D G + C +
Sbjct: 121 VCDVVSSLPPTIIWKHKGRDVILKKD---VRFIVLSNNYLQIRGIKKTDEGTYRCEGRIL 177
Query: 321 AGSTTVRAFLQV--------------REFCVLPKGTFTL-----------------GQPN 349
A +QV + TL G+P
Sbjct: 178 ARGEINFKDIQVIVNVPPTVQARQSIVNATANLGQSVTLVCDADGFPEPTMSWTKDGEPI 237
Query: 350 LATGNSDLRRIAC---------DLRETDSGLYTCTASSESGETSWSASLSVEPR 394
D + I ++ + D Y C A +++GE S L V +
Sbjct: 238 ENEEEDDEKHIFSDDSSELTIRNVDKNDEAEYVCIAENKAGEQDASIHLKVFAK 291
Score = 83.4 bits (206), Expect = 8e-18
Identities = 28/98 (28%), Positives = 35/98 (35%), Gaps = 8/98 (8%)
Query: 69 LIKPFPISEPS--DATVLSGSVVEFVCRVGGDPLPTILWRRDDGKMP------TGRAKIL 120
+ P + S +AT G V VC G P PT+ W +D +
Sbjct: 192 NVPPTVQARQSIVNATANLGQSVTLVCDADGFPEPTMSWTKDGEPIENEEEDDEKHIFSD 251
Query: 121 DDRSLQIENVGPQDEGLYICDVENLVGSISLRASLTVH 158
D L I NV DE Y+C EN G L V
Sbjct: 252 DSSELTIRNVDKNDEAEYVCIAENKAGEQDASIHLKVF 289
Score = 68.7 bits (168), Expect = 7e-13
Identities = 28/195 (14%), Positives = 53/195 (27%), Gaps = 40/195 (20%)
Query: 259 RLSCFAEGSPL-PSVFWTQEGSQVLMFPGNAYGHLHVTQE-GTLRIQGVQKEDAGFFVCS 316
C G + W + L + + TL I +DAG + C
Sbjct: 21 FFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDDDSSTLTIYNANIDDAGIYKCV 80
Query: 317 ALSVAGST-TVRAFLQVRE---FCVLPKG-TFTLGQP-NL---ATGN------------- 354
+ G+ +++ + F P F G+ + +
Sbjct: 81 VTAEDGTQSEATVNVKIFQKLMFKNAPTPQEFKEGEDAVIVCDVVSSLPPTIIWKHKGRD 140
Query: 355 ----SDLR---------RIACDLRETDSGLYTCTASSESGETSWSAS--LSVEPRPGPHA 399
D+R +I +++TD G Y C + + V P A
Sbjct: 141 VILKKDVRFIVLSNNYLQIR-GIKKTDEGTYRCEGRILARGEINFKDIQVIVNVPPTVQA 199
Query: 400 VHRMPDSGLFPGPPA 414
+ ++ G
Sbjct: 200 RQSIVNATANLGQSV 214
Score = 37.9 bits (88), Expect = 0.007
Identities = 14/92 (15%), Positives = 34/92 (36%), Gaps = 5/92 (5%)
Query: 305 VQKEDAGFFVCSALSVAGSTTVRAFLQVREFCVLPKGTFTLGQPNLATGNSDLRRIACDL 364
+ ++ FF+C A + F E + ++ + + L I +
Sbjct: 14 ISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDDDSST--LT-IY-NA 69
Query: 365 RETDSGLYTCTASSESGET-SWSASLSVEPRP 395
D+G+Y C ++E G + ++ + +
Sbjct: 70 NIDDAGIYKCVVTAEDGTQSEATVNVKIFQKL 101
>1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus
gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB:
2om5_A
Length = 382
Score = 178 bits (452), Expect = 2e-50
Identities = 76/385 (19%), Positives = 128/385 (33%), Gaps = 78/385 (20%)
Query: 75 ISEPSDATVLSGSV---VEFVCRVGGDPLPTILWRRDDGKMPTG---RAKILDDRSLQIE 128
+P+ GS V CR +P T W+ + ++ G R +++ +
Sbjct: 8 EEQPAHTLFPEGSAEEKVTLTCRARANPPATYRWKMNGTELKMGPDSRYRLVAGDLVISN 67
Query: 129 NVGPQDEGLYICDVENLVGSI-SLRASLTVHLLRDDFRAEPKDTRVASGETALLECGPPK 187
V +D G Y C N G++ S ASL L++ E ++ G + C PP
Sbjct: 68 PVKAKDAGSYQCVATNARGTVVSREASLRFGFLQEFSAEERDPVKITEGWGVMFTCSPPP 127
Query: 188 GQPEPTLHWKKNGQFIDLESSKSLDLSRRTLGWLRVRPL-------YWNVARPRANLNPR 240
P + W N + + +S+ T G L + Y A + +
Sbjct: 128 HYPALSYRWLLNEFPNFIPADGRRFVSQTT-GNLYIAKTEASDLGNYSCFATSHIDFITK 186
Query: 241 YIGRKMASLLIWNHPRVN---------------------RLSCFAEGSPLPSVFWTQEGS 279
+ K + L + L CFA G+P+P + W +
Sbjct: 187 SVFSKFSQLSLAAEDARQYAPSIKAKFPADTYALTGQMVTLECFAFGNPVPQIKWRKLDG 246
Query: 280 QVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVRE---FC 336
++ E L IQ V ED G + C A ++ G T + + + +
Sbjct: 247 SQTSK--------WLSSEPLLHIQNVDFEDEGTYECEAENIKGRDTYQGRIIIHAQPDWL 298
Query: 337 VLPK-------GTFTL-----------------GQPNLATG-----NSDLRRIACDLRET 367
+ GQP + +L R + L
Sbjct: 299 DVITDTEADIGSDLRWSCVASGKPRPAVRWLRDGQPLASQNRIEVSGGEL-RFS-KLVLE 356
Query: 368 DSGLYTCTASSESGETSWSASLSVE 392
DSG+Y C A ++ G SA L+V+
Sbjct: 357 DSGMYQCVAENKHGTVYASAELTVQ 381
Score = 146 bits (370), Expect = 7e-39
Identities = 57/296 (19%), Positives = 89/296 (30%), Gaps = 42/296 (14%)
Query: 68 ALIKPFPISEPSDATVLSGSVVEFVCRV-GGDPLPTILWRRDDGKMP----TGRAKILDD 122
++ F E + G V F C P + W ++ R
Sbjct: 98 GFLQEFSAEERDPVKITEGWGVMFTCSPPPHYPALSYRWLLNEFPNFIPADGRRFVSQTT 157
Query: 123 RSLQIENVGPQDEGLYICDVENLVGSISLRASLTVHLLRDD-----------FRAEPKDT 171
+L I D G Y C + + I+ L P DT
Sbjct: 158 GNLYIAKTEASDLGNYSCFATSHIDFITKSVFSKFSQLSLAAEDARQYAPSIKAKFPADT 217
Query: 172 RVASGETALLECGPPKGQPEPTLHWKKNGQFIDLESSKSLDLSRRTLGWLRVRP----LY 227
+G+ LEC G P P + W+K + S L V Y
Sbjct: 218 YALTGQMVTLEC-FAFGNPVPQIKWRKLDG----SQTSKWLSSEPLLHIQNVDFEDEGTY 272
Query: 228 ----WN---VARPRANLN---PRYIGRKMASLLIWNHPRVNRLSCFAEGSPLPSVFWTQE 277
N + + + + R SC A G P P+V W ++
Sbjct: 273 ECEAENIKGRDTYQGRIIIHAQPDWLDVITDTEADIGSDL-RWSCVASGKPRPAVRWLRD 331
Query: 278 GSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVR 333
G + + + V+ G LR + ED+G + C A + G+ A L V+
Sbjct: 332 GQPL-----ASQNRIEVSG-GELRFSKLVLEDSGMYQCVAENKHGTVYASAELTVQ 381
Score = 97.2 bits (242), Expect = 5e-22
Identities = 61/406 (15%), Positives = 100/406 (24%), Gaps = 118/406 (29%)
Query: 164 FRAEPKDTRV---ASGETALLECGPPKGQPEPTLHWKKNGQFIDLESSKSLDLSRRTLGW 220
F +P T ++ E L C + P T WK NG + + L L
Sbjct: 7 FEEQPAHTLFPEGSAEEKVTLTC-RARANPPATYRWKMNGTELKMGPDSRYRLVAGDL-- 63
Query: 221 LRVRPL-------YWNVAR--------PRANLNPRYIGRKMASLLIWNHPRVN------- 258
+ P+ Y VA A+L ++ R
Sbjct: 64 VISNPVKAKDAGSYQCVATNARGTVVSREASLRFGFLQE------FSAEERDPVKITEGW 117
Query: 259 --RLSCFA-EGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVC 315
+C P S W + G L I + D G + C
Sbjct: 118 GVMFTCSPPPHYPALSYRWLLNEFPNFIPADG--RRFVSQTTGNLYIAKTEASDLGNYSC 175
Query: 316 SALSVAGSTTVRAFLQVREFCVLPKGTFTLGQPNLATGNSDLR-------RIAC------ 362
A S T F + + + + A +D + C
Sbjct: 176 FATSHIDFITKSVFSKFSQLSLAAEDARQYAPSIKAKFPADTYALTGQMVTLECFAFGNP 235
Query: 363 ---------------------------DLRETDSGLYTCTASSESGETSWSASLSVEPRP 395
++ D G Y C A + G ++ + + +
Sbjct: 236 VPQIKWRKLDGSQTSKWLSSEPLLHIQNVDFEDEGTYECEAENIKGRDTYQGRIIIHAQ- 294
Query: 396 GPHAVHRMPDSGLFPGPPAAPVILNTTRGSVTLG---WGEPEP-----RGGGVAPVIGYT 447
P + + D+ G + G+P P R G
Sbjct: 295 -PDWLDVITDTEADIG------------SDLRWSCVASGKPRPAVRWLRDGQPLASQNR- 340
Query: 448 VEYFSSDLQTGWVVAAHRITSTSITVSDLKPDTSYMFIVRAENSHG 493
++ + S L + S M+ AEN HG
Sbjct: 341 ----------------IEVSGGELRFSKLVLEDSGMYQCVAENKHG 370
>2v5m_A Dscam; neurobiology SPL immunoglobulin domain, cell adhesion,
membrane, development protein; HET: NAG; 1.95A
{Drosophila melanogaster} PDB: 2v5s_A* 2v5r_A*
Length = 388
Score = 178 bits (452), Expect = 3e-50
Identities = 72/387 (18%), Positives = 122/387 (31%), Gaps = 76/387 (19%)
Query: 75 ISEPSDA-TVLSGSVVEFVCRVGGDPLPTILWRRDDGKM---PTGRAKILDDRSLQIENV 130
+ EP++ + + E C+ G+P+P I+W R DG G +I D L
Sbjct: 7 LKEPTNRIDFSNSTGAEIECKASGNPMPEIIWIRSDGTAVGDVPGLRQISSDGKLVFPPF 66
Query: 131 GPQD------EGLYICDVENLVGSI-SLRASLTVHLLRDDFRAEPKDTRVASGETALLEC 183
+D +Y C N GSI S + + + A+ V G +A+++C
Sbjct: 67 RAEDYRQEVHAQVYACLARNQFGSIISRDVHVRAVVA-QYYEADVNKEHVIRGNSAVIKC 125
Query: 184 GPPK--GQPEPTLHWKKNGQFIDLESSKSLDLSRRTL---GWLRVR-------------- 224
P + W + + ++ + + G L +R
Sbjct: 126 LIPSFVADFVEVVSWHTDEEENYFPGAE--YDGKYLVLPSGELHIREVGPEDGYKSYQCR 183
Query: 225 --------------PLYWNVARPRANLNPRYIGRKMASLLIWNHPRVNRLSCFAEGSPLP 270
+ P ++ PR L + + L C A+G P P
Sbjct: 184 TKHRLTGETRLSATKGRLVITEPISSSAPRTPALVQKPLELMVAHTI-SLLCPAQGFPAP 242
Query: 271 SVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRAFL 330
S W + GTL I+ ED+G ++C + G +V L
Sbjct: 243 SFRWYKFIEGTTRKQAVVLNDRVKQVSGTLIIKDAVVEDSGKYLCVVNNSVGGESVETVL 302
Query: 331 QVRE---FCVLPK-------GTFTL-----GQPN-----------LATGNSDLRRIACDL 364
V + P G P + S L RI +
Sbjct: 303 TVTAPLSAKIDPPTQTVDFGRPAVFTCQYTGNPIKTVSWMKDGKAIGHSESVL-RIE-SV 360
Query: 365 RETDSGLYTCTASSESGETSWSASLSV 391
++ D G+Y C ++ SA L +
Sbjct: 361 KKEDKGMYQCFVRNDRESAEASAELKL 387
Score = 132 bits (334), Expect = 5e-34
Identities = 53/300 (17%), Positives = 97/300 (32%), Gaps = 55/300 (18%)
Query: 72 PFPISEPSDATVLSGSVVEFVCRVG---GDPLPTILWRRDDGKMPT------GRAKILDD 122
+ ++ + V+ G+ C + D + + W D+ + G+ +L
Sbjct: 104 QYYEADVNKEHVIRGNSAVIKCLIPSFVADFVEVVSWHTDEEENYFPGAEYDGKYLVLPS 163
Query: 123 RSLQIENVGPQD-EGLYICDVENLVGS-ISLRASLTVHLLRDD--------FRAEPKDTR 172
L I VGP+D Y C ++ + L A+ ++ + K
Sbjct: 164 GELHIREVGPEDGYKSYQCRTKHRLTGETRLSATKGRLVITEPISSSAPRTPALVQKPLE 223
Query: 173 VASGETALLECGPPKGQPEPTLHWKKNGQFIDLESSKSLDLSRRTLGW------LRVRP- 225
+ T L C P +G P P+ W K + +++ L+ R
Sbjct: 224 LMVAHTISLLC-PAQGFPAPSFRWYKFIE--GTTRKQAVVLNDRVKQVSGTLIIKDAVVE 280
Query: 226 ---LY----WNV---ARPRANLN---PRYIGRKMASLLIWNHPRVNRLSCFAEGSPLPSV 272
Y N L P + + +C G+P+ +V
Sbjct: 281 DSGKYLCVVNNSVGGESVETVLTVTAPLSAKIDPPTQTVDFGRPA-VFTCQYTGNPIKTV 339
Query: 273 FWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQV 332
W ++G + E LRI+ V+KED G + C + S A L++
Sbjct: 340 SWMKDGKAI------------GHSESVLRIESVKKEDKGMYQCFVRNDRESAEASAELKL 387
Score = 86.5 bits (214), Expect = 2e-18
Identities = 26/87 (29%), Positives = 40/87 (45%), Gaps = 6/87 (6%)
Query: 71 KPFPISEPSDATVLSGSVVEFVCRVGGDPLPTILWRRDDGKMPTGRAKILDDRSLQIENV 130
+P TV G F C+ G+P+ T+ W +D G+A + L+IE+V
Sbjct: 307 PLSAKIDPPTQTVDFGRPAVFTCQYTGNPIKTVSWMKD------GKAIGHSESVLRIESV 360
Query: 131 GPQDEGLYICDVENLVGSISLRASLTV 157
+D+G+Y C V N S A L +
Sbjct: 361 KKEDKGMYQCFVRNDRESAEASAELKL 387
Score = 80.4 bits (198), Expect = 2e-16
Identities = 58/413 (14%), Positives = 95/413 (23%), Gaps = 124/413 (30%)
Query: 164 FRAEPKDT-RVASGETALLECGPPKGQPEPTLHW-KKNGQFIDLESSKSLDLSRRTLGWL 221
F EP + ++ A +EC G P P + W + +G + S L +
Sbjct: 6 FLKEPTNRIDFSNSTGAEIEC-KASGNPMPEIIWIRSDGTAVGDVPGLRQISSDGKLVFP 64
Query: 222 RVRP----------LYWNVARPRANLNP------RYIGRKMASLLIWNHPRVN------- 258
R +Y +AR N R + + +
Sbjct: 65 PFRAEDYRQEVHAQVYACLAR-----NQFGSIISRDVHVRAVVAQYYEADVNKEHVIRGN 119
Query: 259 --RLSCFAE---GSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDA-GF 312
+ C + V W + + G V G L I+ V ED
Sbjct: 120 SAVIKCLIPSFVADFVEVVSWHTDEEENYFPGAEYDGKYLVLPSGELHIREVGPEDGYKS 179
Query: 313 FVCSALSVAGSTTV------RAFLQVREFCVLPKGTFTLGQPNLATGNSDLRRIAC---- 362
+ C T R + P+ + +P + + C
Sbjct: 180 YQCRTKHRLTGETRLSATKGRLVITEPISSSAPRTPALVQKPLELMVAHTI-SLLCPAQG 238
Query: 363 -------------------------------------DLRETDSGLYTCTASSESGETSW 385
D DSG Y C ++ G S
Sbjct: 239 FPAPSFRWYKFIEGTTRKQAVVLNDRVKQVSGTLIIKDAVVEDSGKYLCVVNNSVGGESV 298
Query: 386 SASLSVEPRPGPHAVHRMPDSGLFPGPPAAPVILNTTRGSVTLG---WGEPEPRGGGVAP 442
L+V A P + G G P
Sbjct: 299 ETVLTVTAP--LSAKIDPPTQTVDFG------------RPAVFTCQYTGNPIK------- 337
Query: 443 VIGYTVEYFSSDLQTGWVVAAHRITST--SITVSDLKPDTSYMFIVRAENSHG 493
TV W+ I + + + +K + M+ N
Sbjct: 338 ----TVS---------WMKDGKAIGHSESVLRIESVKKEDKGMYQCFVRNDRE 377
>2wim_A N-CAM 2, NCAM2, neural cell adhesion molecule 2; cell membrane,
transmembrane, immunoglobulin; HET: NDG NAG; 3.00A {Homo
sapiens}
Length = 291
Score = 173 bits (441), Expect = 1e-49
Identities = 60/291 (20%), Positives = 100/291 (34%), Gaps = 31/291 (10%)
Query: 68 ALIKPFPISEPSDATVLSGSVVEFVCRVGGDPLPTILWRRDDGK--MPTGRAKILDD--- 122
++ S + G F C G+P +I W G+ + T R + +
Sbjct: 1 SMALLQVTISLSKVELSVGESKFFTCTAIGEP-ESIDWYNPQGEKIISTQRVVVQKEGVR 59
Query: 123 RSLQIENVGPQDEGLYICDVENLVGSI-SLRASLTVHLLRDDFRAEPKDTRVASGETALL 181
L I N +D G+Y C + G L ++ + FR GE A +
Sbjct: 60 SRLTIYNANIEDAGIYRCQATDAKGQTQEATVVLEIY-QKLTFREVVSPQEFKQGEDAEV 118
Query: 182 ECGPPKGQPEPTLHWKKNGQFIDLESS-KSLDLSRRTLGWLRVRP----LY----WNVAR 232
C P P + W + + + S + L+ L L + +Y AR
Sbjct: 119 VC-RVSSSPAPAVSWLYHNEEVTTISDNRFAMLANNNLQILNINKSDEGIYRCEGRVEAR 177
Query: 233 PRANLNPRYIGRKMASLLIWNHPRVN---------RLSCFAEGSPLPSVFWTQEGSQVLM 283
+ + + + N SC A GSP P++ W + G +
Sbjct: 178 GEIDFRDIIVIVNVPPAISMPQKSFNATAERGEEMTFSCRASGSPEPAISWFRNGKLI-- 235
Query: 284 FPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVRE 334
N ++ L ++ + D G +VC A + AG +AFLQV
Sbjct: 236 -EENEK-YILKGSNTELTVRNIINSDGGPYVCRATNKAGEDEKQAFLQVFV 284
Score = 107 bits (269), Expect = 4e-26
Identities = 45/287 (15%), Positives = 76/287 (26%), Gaps = 62/287 (21%)
Query: 164 FRAEPKDTRVASGETALLECGPPKGQPEPTLHWKKNGQFIDLES--SKSLDLSRRTLGWL 221
++ GE+ C G+PE + G+ I + R L
Sbjct: 7 VTISLSKVELSVGESKFFTC-TAIGEPESIDWYNPQGEKIISTQRVVVQKEGVRSRLTIY 65
Query: 222 RVRP----LYWNVAR--------PRANLN---PRYIGRKMASLLIWNHPRVNRLSCFAEG 266
+Y A L ++ + C
Sbjct: 66 NANIEDAGIYRCQATDAKGQTQEATVVLEIYQKLTFREVVSPQEFKQGEDA-EVVCRVSS 124
Query: 267 SPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSAL-SVAGSTT 325
SP P+V W +V N + + L+I + K D G + C G
Sbjct: 125 SPAPAVSWLYHNEEVTTISDNRF---AMLANNNLQILNINKSDEGIYRCEGRVEARGEID 181
Query: 326 VRAFLQV-------------REFCVLPKGTFTL-----GQP------------------- 348
R + + T G P
Sbjct: 182 FRDIIVIVNVPPAISMPQKSFNATAERGEEMTFSCRASGSPEPAISWFRNGKLIEENEKY 241
Query: 349 NLATGNSDLRRIACDLRETDSGLYTCTASSESGETSWSASLSVEPRP 395
L N++L + ++ +D G Y C A++++GE A L V +
Sbjct: 242 ILKGSNTEL-TVR-NIINSDGGPYVCRATNKAGEDEKQAFLQVFVQH 286
Score = 89.1 bits (221), Expect = 9e-20
Identities = 28/111 (25%), Positives = 42/111 (37%), Gaps = 7/111 (6%)
Query: 52 ARGALSDDQWKLIAKEALIKPFPIS--EPSDATVLSGSVVEFVCRVGGDPLPTILWRRDD 109
ARG + +I P + +AT G + F CR G P P I W R+
Sbjct: 176 ARGEIDFRDIIVIVNVP---PAISMPQKSFNATAERGEEMTFSCRASGSPEPAISWFRNG 232
Query: 110 GKM-PTGRAKIL-DDRSLQIENVGPQDEGLYICDVENLVGSISLRASLTVH 158
+ + + + L + N+ D G Y+C N G +A L V
Sbjct: 233 KLIEENEKYILKGSNTELTVRNIINSDGGPYVCRATNKAGEDEKQAFLQVF 283
Score = 67.1 bits (164), Expect = 2e-12
Identities = 29/192 (15%), Positives = 52/192 (27%), Gaps = 38/192 (19%)
Query: 259 RLSCFAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSAL 318
+C A G P ++ +G + L I EDAG + C A
Sbjct: 23 FFTCTAIGEPESIDWYNPQG--EKIISTQRVVVQKEGVRSRLTIYNANIEDAGIYRCQAT 80
Query: 319 SVAGST-TVRAFLQVRE---FCVLPKG-TFTLGQPNL----ATGN--------------- 354
G T L++ + F + F G+ + +
Sbjct: 81 DAKGQTQEATVVLEIYQKLTFREVVSPQEFKQGEDAEVVCRVSSSPAPAVSWLYHNEEVT 140
Query: 355 -SDLRRIA---------CDLRETDSGLYTCTASSESGETSWSAS--LSVEPRPGPHAVHR 402
R A ++ ++D G+Y C E+ + V P +
Sbjct: 141 TISDNRFAMLANNNLQILNINKSDEGIYRCEGRVEARGEIDFRDIIVIVNVPPAISMPQK 200
Query: 403 MPDSGLFPGPPA 414
++ G
Sbjct: 201 SFNATAERGEEM 212
>2rik_A Titin; I-SET IG fold, poly-IG linear array, structural protein;
1.60A {Oryctolagus cuniculus} PDB: 2rjm_A
Length = 284
Score = 172 bits (438), Expect = 2e-49
Identities = 67/290 (23%), Positives = 102/290 (35%), Gaps = 32/290 (11%)
Query: 68 ALIKPFPISEPSDATVLSGSVVEFVCRVGGDPLPTILWRRDDGKM-PTGRAKIL---DDR 123
A+ PF +P + G F C V G I W +D+ ++ P G K+ +
Sbjct: 2 AMAPPFFDLKPVSVDLALGESGTFKCHVTGTAPIKITWAKDNREIRPGGNYKMTLVENTA 61
Query: 124 SLQIENVGPQDEGLYICDVENLVGSISLRASLTVHLLRDDFRAEPKDTR-VASGETALLE 182
+L + V D G Y C N+ G S A L V F + + +R V E E
Sbjct: 62 TLTVLKVTKGDAGQYTCYASNVAGKDSCSAQLGVQEPP-RFIKKLEPSRIVKQDEHTRYE 120
Query: 183 CGPPKGQPEPTLHWKKNGQFIDLESSK--SLDLSRRTLGWLRVRP----LY----WNVA- 231
C G PE + W K+ I S S S L + Y N A
Sbjct: 121 C-KIGGSPEIKVLWYKDETEIQESSKFRMSFVESVAVLEMYNLSVEDSGDYTCEAHNAAG 179
Query: 232 --RPRANLN---PRYIGRKMASLLIWNHPRVNRLSCFAEGSPLPSVFWTQEGSQVLMFPG 286
+L P +K + V L C +G+P V W ++ ++ G
Sbjct: 180 SASSSTSLKVKEPPVFRKKPHPVETLKGADV-HLECELQGTPPFQVSWHKDKREL--RSG 236
Query: 287 NAYGHLHVTQEG---TLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVR 333
+ E ++ I V D G + C A + GS T + ++
Sbjct: 237 K---KYKIMSENFLTSIHILNVDSADIGEYQCKASNDVGSYTCVGSITLK 283
Score = 127 bits (320), Expect = 6e-33
Identities = 57/281 (20%), Positives = 98/281 (34%), Gaps = 57/281 (20%)
Query: 164 FRAEPKDTRVASGETALLECGPPKGQPEPTLHWKKNGQFIDLESSK--SLDLSRRTLGWL 221
F +P +A GE+ +C G + W K+ + I + +L + TL L
Sbjct: 8 FDLKPVSVDLALGESGTFKC-HVTGTAPIKITWAKDNREIRPGGNYKMTLVENTATLTVL 66
Query: 222 RVRP----LYWNVAR-------PRANLN----PRYIGRKMASLLIWNHPRVNRLSCFAEG 266
+V Y A A L PR+I + S ++ R C G
Sbjct: 67 KVTKGDAGQYTCYASNVAGKDSCSAQLGVQEPPRFIKKLEPSRIVKQDEHT-RYECKIGG 125
Query: 267 SPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTTV 326
SP V W ++ +++ + + V L + + ED+G + C A + AGS +
Sbjct: 126 SPEIKVLWYKDETEIQ--ESSKFRMSFVESVAVLEMYNLSVEDSGDYTCEAHNAAGSASS 183
Query: 327 RAFLQVRE---FCVLPK-------GTFTL-----GQPN--------------------LA 351
L+V+E F P L G P ++
Sbjct: 184 STSLKVKEPPVFRKKPHPVETLKGADVHLECELQGTPPFQVSWHKDKRELRSGKKYKIMS 243
Query: 352 TGNSDLRRIACDLRETDSGLYTCTASSESGETSWSASLSVE 392
I ++ D G Y C AS++ G + S++++
Sbjct: 244 ENFLTSIHIL-NVDSADIGEYQCKASNDVGSYTCVGSITLK 283
Score = 88.3 bits (219), Expect = 2e-19
Identities = 42/172 (24%), Positives = 62/172 (36%), Gaps = 37/172 (21%)
Query: 259 RLSCFAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSAL 318
C G+ + W ++ ++ PG Y V TL + V K DAG + C A
Sbjct: 24 TFKCHVTGTAPIKITWAKDNREIR--PGGNYKMTLVENTATLTVLKVTKGDAGQYTCYAS 81
Query: 319 SVAGSTTVRAFLQVRE---FCVLPKG--TFTLGQPNL----ATGN--------------- 354
+VAG + A L V+E F + + G+
Sbjct: 82 NVAGKDSCSAQLGVQEPPRFIKKLEPSRIVKQDEHTRYECKIGGSPEIKVLWYKDETEIQ 141
Query: 355 -SDLRRIAC----------DLRETDSGLYTCTASSESGETSWSASLSVEPRP 395
S R++ +L DSG YTC A + +G S S SL V+ P
Sbjct: 142 ESSKFRMSFVESVAVLEMYNLSVEDSGDYTCEAHNAAGSASSSTSLKVKEPP 193
>3p3y_A Neurofascin; IG domains, cell adhesion; HET: NAG; 2.60A {Homo
sapiens} PDB: 3p40_A*
Length = 404
Score = 175 bits (444), Expect = 7e-49
Identities = 73/393 (18%), Positives = 122/393 (31%), Gaps = 82/393 (20%)
Query: 72 PFPISEPSDATVLSGSVVEFVCRVGGDPLPTILWRRDDGKMPTG----RAKILDDRSLQI 127
D V + C G+P P+ W R+ + +L I
Sbjct: 18 TITKQSAKDHIVDPRDNILIECEAKGNPAPSFHWTRNSRFFNIAKDPRVSMRRRSGTLVI 77
Query: 128 ENV----GPQDEGLYICDVENLVGSI-SLRASLTVHLLRDDFRAEPKDTRVASGETALLE 182
+ + EG Y C N G+ S R L V + V G L+
Sbjct: 78 DFRSGGRPEEYEGEYQCFARNKFGTALSNRIRLQVSKSPLWPKENLDPVVVQEGAPLTLQ 137
Query: 183 CGPPKGQPEPTLHWKKNGQFIDLESSK-------SL------------------------ 211
C PP G P P + W + + + L
Sbjct: 138 CNPPPGLPSPVIFWMSSSMEPITQDKRVSQGHNGDLYFSNVMLQDMQTDYSCNARFHFTH 197
Query: 212 DLSRRTLGWLRVRPLYWNVARPRANLNPRYIGRKMASLLIWNHPRVNRLSCFAEGSPLPS 271
+ ++ L+V R + + P+ +S ++ + L C A G P P
Sbjct: 198 TIQQKNPFTLKVLTTRGVAERTPSFMYPQ---GTASSQMVLRGMDL-LLECIASGVPTPD 253
Query: 272 VFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQ 331
+ W ++G + P + LRI V +ED+G + C A + GS ++
Sbjct: 254 IAWYKKGGDL---PSD--KAKFENFNKALRITNVSEEDSGEYFCLASNKMGSIRHTISVR 308
Query: 332 VRE---FCVLPK-------GTFTL-----------------GQPNLATGNSDLRRIA--- 361
V+ + PK L G+P + + R +A
Sbjct: 309 VKAAPYWLDEPKNLILAPGEDGRLVCRANGNPKPTVQWMVNGEPLQSAPPNPNREVAGDT 368
Query: 362 ---CDLRETDSGLYTCTASSESGETSWSASLSV 391
D + + +Y C S+E G +A +SV
Sbjct: 369 IIFRDTQISSRAVYQCNTSNEHGYLLANAFVSV 401
Score = 148 bits (376), Expect = 2e-39
Identities = 61/298 (20%), Positives = 91/298 (30%), Gaps = 38/298 (12%)
Query: 68 ALIKPFPISEPSDATVLSGSVVEFVCRV-GGDPLPTILWRRDDGKMPT--GRAKILDDRS 124
+ +P V G+ + C G P P I W + T R +
Sbjct: 113 SKSPLWPKENLDPVVVQEGAPLTLQCNPPPGLPSPVIFWMSSSMEPITQDKRVSQGHNGD 172
Query: 125 LQIENVGPQD-EGLYICDVENLVG---SISLRASLTVHLLRDDFRAEPK---------DT 171
L NV QD + Y C+ +L V R P
Sbjct: 173 LYFSNVMLQDMQTDYSCNARFHFTHTIQQKNPFTLKVLTTRGVAERTPSFMYPQGTASSQ 232
Query: 172 RVASGETALLECGPPKGQPEPTLHWKKNGQFIDLESSKSLDLSRRTLGWLRVRP----LY 227
V G LLEC G P P + W K G + + +K + + L V Y
Sbjct: 233 MVLRGMDLLLEC-IASGVPTPDIAWYKKGGDLPSDKAK-FENFNKALRITNVSEEDSGEY 290
Query: 228 ----WN---VARPRANLN----PRYIGRKMASLLIWNHPRVNRLSCFAEGSPLPSVFWTQ 276
N R ++ P ++ +L RL C A G+P P+V W
Sbjct: 291 FCLASNKMGSIRHTISVRVKAAPYWLDEPKNLILAPGED-G-RLVCRANGNPKPTVQWMV 348
Query: 277 EGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVRE 334
G + P N T+ + Q + C+ + G AF+ V +
Sbjct: 349 NGEPLQSAPPNPN---REVAGDTIIFRDTQISSRAVYQCNTSNEHGYLLANAFVSVLD 403
Score = 135 bits (342), Expect = 6e-35
Identities = 45/144 (31%), Positives = 69/144 (47%), Gaps = 3/144 (2%)
Query: 62 KLIAKEALIKPFPISEPSDATVLSGSVVEFVCRVGGDPLPTILWRRDDGKMPTGRAKILD 121
+ +A+ +P S VL G + C G P P I W + G +P+ +AK +
Sbjct: 213 RGVAERTPSFMYPQGTASSQMVLRGMDLLLECIASGVPTPDIAWYKKGGDLPSDKAKFEN 272
Query: 122 -DRSLQIENVGPQDEGLYICDVENLVGSISLRASLTVHLLRDDFRAEPKDTRVASGETAL 180
+++L+I NV +D G Y C N +GSI S+ V + EPK+ +A GE
Sbjct: 273 FNKALRITNVSEEDSGEYFCLASNKMGSIRHTISVRVK-AAPYWLDEPKNLILAPGEDGR 331
Query: 181 LECGPPKGQPEPTLHWKKNGQFID 204
L C G P+PT+ W NG+ +
Sbjct: 332 LVC-RANGNPKPTVQWMVNGEPLQ 354
Score = 92.2 bits (229), Expect = 4e-20
Identities = 70/408 (17%), Positives = 112/408 (27%), Gaps = 120/408 (29%)
Query: 167 EPKDTRVASGETALLECGPPKGQPEPTLHWKKNGQFIDLESSK--SLDLSRRTLGWLRVR 224
KD V + L+EC KG P P+ HW +N +F ++ S+ TL
Sbjct: 23 SAKDHIVDPRDNILIEC-EAKGNPAPSFHWTRNSRFFNIAKDPRVSMRRRSGTLVIDFRS 81
Query: 225 P--------LYWNVAR--------PRANLNPRYIGRKMASLLIWNHPRVN---------R 259
Y AR R L
Sbjct: 82 GGRPEEYEGEYQCFARNKFGTALSNRIRLQVSKSPL------WPKENLDPVVVQEGAPLT 135
Query: 260 LSCFA-EGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDA-GFFVCSA 317
L C G P P +FW + + + + G L V +D + C+A
Sbjct: 136 LQCNPPPGLPSPVIFWMSSSMEPI--TQD--KRVSQGHNGDLYFSNVMLQDMQTDYSCNA 191
Query: 318 LSVAGSTTVR---AFLQVREFCVLPKGTFTLGQPN------------------LATGN-- 354
T + L+V + + T + P +A+G
Sbjct: 192 RFHFTHTIQQKNPFTLKVLTTRGVAERTPSFMYPQGTASSQMVLRGMDLLLECIASGVPT 251
Query: 355 -------------SDLRRIAC--------DLRETDSGLYTCTASSESGETSWSASLSVEP 393
SD + ++ E DSG Y C AS++ G + S+ V+
Sbjct: 252 PDIAWYKKGGDLPSDKAKFENFNKALRITNVSEEDSGEYFCLASNKMGSIRHTISVRVKA 311
Query: 394 RPGPHAVHRMPDSGLFPGPPAAPVILNTTRGSVTLG---WGEPEP-----RGGGVAPVIG 445
P+ + + L PG L G P+P G P+
Sbjct: 312 A--PYWLDEPKNLILAPG------------EDGRLVCRANGNPKPTVQWMVNG--EPLQS 355
Query: 446 YTVEYFSSDLQTGWVVAAHRITSTSITVSDLKPDTSYMFIVRAENSHG 493
+ +I D + + ++ N HG
Sbjct: 356 APPNPN------------REVAGDTIIFRDTQISSRAVYQCNTSNEHG 391
>2yd9_A Receptor-type tyrosine-protein phosphatase S; hydrolase; HET: NAG
B3P; 2.60A {Homo sapiens}
Length = 304
Score = 167 bits (425), Expect = 2e-47
Identities = 74/296 (25%), Positives = 111/296 (37%), Gaps = 42/296 (14%)
Query: 71 KPFPISEPSDATVLSGSVVEFVCRVGGDPLPTILWRRDDGKMPTGRAKIL-----DDRSL 125
P I EP D +SG V FVC+ GDP P + W + K+ + R + + L
Sbjct: 6 PPRFIKEPKDQIGVSGGVASFVCQATGDPKPRVTWNKKGKKVNSQRFETIEFDESAGAVL 65
Query: 126 QIENVG-PQDEGLYICDVENLVGSISLRASLTVHLLRD------DFRAEPKDTRVASGET 178
+I+ + P+DE +Y C +N VG I++ A LTV + P+ V T
Sbjct: 66 RIQPLRTPRDENVYECVAQNSVGEITVHAKLTVLREDQLPSGFPNIDMGPQLKVVERTRT 125
Query: 179 ALLECGPPKGQPEPTLHWKKNGQFIDLESSKS--LDLSRRTLGWLRVRP----LY----W 228
A + C G P+P + W K+ +D +S L L Y
Sbjct: 126 ATMLC-AASGNPDPEITWFKDFLPVDPSASNGRIKQLRSGALQIESSEETDQGKYECVAT 184
Query: 229 NVARPR----ANLN------PRYIGRKMASLLIWNHPRVNRLSCFAEGSPLPSVFWTQEG 278
N A R ANL S I V ++C A GSP+P V W Q
Sbjct: 185 NSAGVRYSSPANLYVRVQNVAPRFSILPMSHEIMPGGNV-NITCVAVGSPMPYVKWMQGA 243
Query: 279 SQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVRE 334
+ + G ++ +D+ + C A+S G A + V+
Sbjct: 244 EDL---TPEDDMPV-----GRNVLELTDVKDSANYTCVAMSSLGVIEAVAQITVKS 291
Score = 124 bits (312), Expect = 1e-31
Identities = 66/292 (22%), Positives = 105/292 (35%), Gaps = 63/292 (21%)
Query: 164 FRAEPKDTRVASGETALLECGPPKGQPEPTLHWKKNGQFIDLESSKSLDLSRRTLGWLRV 223
F EPKD SG A C G P+P + W K G+ ++ + ++++ LR+
Sbjct: 9 FIKEPKDQIGVSGGVASFVC-QATGDPKPRVTWNKKGKKVNSQRFETIEFDESAGAVLRI 67
Query: 224 RPL--------YWNVAR-------PRANLN-PRYIGRKMASLLIWNHPRVN--------R 259
+PL Y VA+ A L R I P++
Sbjct: 68 QPLRTPRDENVYECVAQNSVGEITVHAKLTVLREDQLPSGFPNIDMGPQLKVVERTRTAT 127
Query: 260 LSCFAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALS 319
+ C A G+P P + W ++ V P + G + + G L+I+ ++ D G + C A +
Sbjct: 128 MLCAASGNPDPEITWFKDFLPV--DPSASNGRIKQLRSGALQIESSEETDQGKYECVATN 185
Query: 320 VAGS-TTVRAFLQVREFCVLPKGTFTLGQPNL-------------ATGN----------- 354
AG + A L VR V P+ F++ + A G+
Sbjct: 186 SAGVRYSSPANLYVRVQNVAPR--FSILPMSHEIMPGGNVNITCVAVGSPMPYVKWMQGA 243
Query: 355 -----SDLRRIA----CDLRETDSGLYTCTASSESGETSWSASLSVEPRPGP 397
D + DS YTC A S G A ++V+ P
Sbjct: 244 EDLTPEDDMPVGRNVLELTDVKDSANYTCVAMSSLGVIEAVAQITVKSLPKA 295
Score = 75.2 bits (185), Expect = 6e-15
Identities = 46/200 (23%), Positives = 64/200 (32%), Gaps = 45/200 (22%)
Query: 259 RLSCFAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQ-KEDAGFFVCSA 317
C A G P P V W ++G +V + LRIQ ++ D + C A
Sbjct: 25 SFVCQATGDPKPRVTWNKKGKKVNSQRFE-TIEFDESAGAVLRIQPLRTPRDENVYECVA 83
Query: 318 LSVAGSTTVRAFLQVREFCVLPKG--TFTLGQPNL-------------ATGN-------- 354
+ G TV A L V LP G +G A+GN
Sbjct: 84 QNSVGEITVHAKLTVLREDQLPSGFPNIDMGPQLKVVERTRTATMLCAASGNPDPEITWF 143
Query: 355 ---------SDLRRIAC---------DLRETDSGLYTCTASSESGE-TSWSASLSVEPRP 395
+ RI ETD G Y C A++ +G S A+L V +
Sbjct: 144 KDFLPVDPSASNGRIKQLRSGALQIESSEETDQGKYECVATNSAGVRYSSPANLYVRVQN 203
Query: 396 GPHAVHRMP-DSGLFPGPPA 414
+P + PG
Sbjct: 204 VAPRFSILPMSHEIMPGGNV 223
>2jll_A NCAM2, neural cell adhesion molecule 2; immunoglobulin domain,
immunoglobulin superfamily, transmembrane,
phosphoprotein, membrane, glycoprotein; HET: NAG; 2.30A
{Homo sapiens} PDB: 2xyc_A* 2jlk_A* 2doc_A
Length = 389
Score = 168 bits (426), Expect = 2e-46
Identities = 62/402 (15%), Positives = 115/402 (28%), Gaps = 98/402 (24%)
Query: 259 RLSCFAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQE-----GTLRIQGVQKEDAGFF 313
L C AEG P+P + W + G+ + + +L I+ V+ D+G +
Sbjct: 19 TLVCDAEGEPIPEITWKRAVDGFTFTEGDKSLDGRIEVKGQHGSSSLHIKDVKLSDSGRY 78
Query: 314 VCSALSVAGSTTVRAFLQVRE---FCVLPK-------GTFTL-----GQPNLA------- 351
C A S G +L + F + P +
Sbjct: 79 DCEAASRIGGHQKSMYLDIEYAPKFISNQTIYYSWEGNPINISCDVKSNPPASIHWRRDK 138
Query: 352 ---TGNSDLR------------RIACDLRETDSGLYTCTASSESGETSWSASLSVEPRPG 396
+ IA + D G Y CTA++ G L++ P
Sbjct: 139 LVLPAKNTTNLKTYSTGRKMILEIA-PTSDNDFGRYNCTATNHIGTRFQEYILALADVPS 197
Query: 397 PHAVHRMPDSGLFPGPPAAPVILNTTRGSVTLGWGEPEPRGGGVAPVIGYTVEYFSSDLQ 456
P I+ ++ + + + +P+ GG P+ Y V+ +
Sbjct: 198 S---------------PYGVKIIELSQTTAKVSFNKPDSHGG--VPIHHYQVDVKEVASE 240
Query: 457 TGWVVAAHRITSTSITVSDLKPDTSYMFIVRAENSHGLGIPSPVSPITRTLGLNSLVPQH 516
W + T + +++L+P+T+Y V A N G G S +
Sbjct: 241 I-WKIVRSHGVQTMVVLNNLEPNTTYEIRVAAVNGKGQGDYSKIEIFQTL---------- 289
Query: 517 LLDEARARLGTKVVNLRELIPTASTAVRITWEVSWGSVPQHLLDEARARLGTKVVNLREL 576
R + P++ + +++ D+ A + +V R
Sbjct: 290 ---PVREPSPPSI----HGQPSSGKSFKLSITKQ---------DDGGAPILEYIVKYRSK 333
Query: 577 IPTASTAVRITWEKYNMATVMNAATTTSYTVTHLRKFTKYEF 618
+ HL+ YE
Sbjct: 334 DKE-------DQWLEKKVQG----NKDHIILEHLQWTMGYEV 364
Score = 166 bits (421), Expect = 7e-46
Identities = 61/400 (15%), Positives = 113/400 (28%), Gaps = 89/400 (22%)
Query: 167 EPKDTRVASGETALLECGPPKGQPEPTLHWKKNGQFIDLESSKSLDLSRRTL------GW 220
+ K+ L C +G+P P + WK+ R +
Sbjct: 6 QLKNETTYENGQVTLVC-DAEGEPIPEITWKRAVDGFTFTEGDKSLDGRIEVKGQHGSSS 64
Query: 221 LRVRPL-------YWNVARPRANLNPRYIGRKMASLLIWNHPRVN--------------R 259
L ++ + Y A + +K L I P+
Sbjct: 65 LHIKDVKLSDSGRYDCEAA-----SRIGGHQKSMYLDIEYAPKFISNQTIYYSWEGNPIN 119
Query: 260 LSCFAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEG---TLRIQGVQKEDAGFFVCS 316
+SC + +P S+ W ++ L+ P +L G L I D G + C+
Sbjct: 120 ISCDVKSNPPASIHWRRDK---LVLPAKNTTNLKTYSTGRKMILEIAPTSDNDFGRYNCT 176
Query: 317 ALSVAGSTTVRAFLQVRE----------------FCVL--PKGTFTLGQP---------- 348
A + G+ L + + + K G P
Sbjct: 177 ATNHIGTRFQEYILALADVPSSPYGVKIIELSQTTAKVSFNKPDSHGGVPIHHYQVDVKE 236
Query: 349 -------NLATGNSDLRRIACDLRETDSGLYTCTASSESGETSWSASLSVEPRPGPHAVH 401
+ + + +L + A + G+ +S
Sbjct: 237 VASEIWKIVRSHGVQTMVVLNNLEPNTTYEIRVAAVNGKGQGDYSKIEIF---------Q 287
Query: 402 RMPDSGLFPGPPAAPVILNTTRGSVTLGWGEPEPRGGGVAPVIGYTVEYFSSDLQTGWVV 461
+P P PP+ ++ S L + + G P++ Y V+Y S D + W+
Sbjct: 288 TLPVR--EPSPPSIHGQ-PSSGKSFKLSITKQDDGGA---PILEYIVKYRSKDKEDQWLE 341
Query: 462 AAHRITSTSITVSDLKPDTSYMFIVRAENSHGLGIPSPVS 501
+ I + L+ Y + A N G P+
Sbjct: 342 KKVQGNKDHIILEHLQWTMGYEVQITAANRLGYSEPTVYE 381
Score = 121 bits (304), Expect = 5e-30
Identities = 32/149 (21%), Positives = 57/149 (38%), Gaps = 14/149 (9%)
Query: 71 KPFPISEPSDATVLSGSVVEFVCRVGGDPLPTILWRRDDG--------KMPTGRAKILDD 122
+P I + + T V VC G+P+P I W+R K GR ++
Sbjct: 1 QP-HIIQLKNETTYENGQVTLVCDAEGEPIPEITWKRAVDGFTFTEGDKSLDGRIEVKGQ 59
Query: 123 R---SLQIENVGPQDEGLYICDVENLVGSISLRASLTVHLLRDDFRAEPKDTRVASGETA 179
SL I++V D G Y C+ + +G L + F + G
Sbjct: 60 HGSSSLHIKDVKLSDSGRYDCEAASRIGGHQKSMYLDIE-YAPKFISNQTIYYSWEGNPI 118
Query: 180 LLECGPPKGQPEPTLHWKKNGQFIDLESS 208
+ C K P ++HW+++ + +++
Sbjct: 119 NISC-DVKSNPPASIHWRRDKLVLPAKNT 146
Score = 74.8 bits (184), Expect = 2e-14
Identities = 23/89 (25%), Positives = 33/89 (37%), Gaps = 6/89 (6%)
Query: 75 ISEPSDATVLSGSVVEFVCRVGGDPLPTILWRRDDGKMP---TGRAKILDDR---SLQIE 128
IS + G+ + C V +P +I WRRD +P T K L+I
Sbjct: 104 ISNQTIYYSWEGNPINISCDVKSNPPASIHWRRDKLVLPAKNTTNLKTYSTGRKMILEIA 163
Query: 129 NVGPQDEGLYICDVENLVGSISLRASLTV 157
D G Y C N +G+ L +
Sbjct: 164 PTSDNDFGRYNCTATNHIGTRFQEYILAL 192
>3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical
bundle cytokine, CY receptor complex, extracellular
complex; HET: NAG; 4.30A {Homo sapiens}
Length = 423
Score = 159 bits (404), Expect = 3e-43
Identities = 49/392 (12%), Positives = 104/392 (26%), Gaps = 80/392 (20%)
Query: 72 PFPISEPSDATVLSGSVVEFVCRVGGDPLPTILWRRDDGKMPTGRAKILDDR---SLQIE 128
+ E + V + + V + LW + L +R S+ I
Sbjct: 49 SGTVYEAAAVEVDVSASITLQVLVDAPGNISCLWVFKHSSLNCQPHFDLQNRGVVSMVIL 108
Query: 129 NVGPQDEGLYICDVENLVGSISLRASLTVHLLRDDFRAEPKDTRVASGETALLECGPPKG 188
+ G Y+ +++ + ++ ++++ + R + AL C +
Sbjct: 109 KMTETQAGEYLLFIQSEATNYTILFTVSIRN-TLLYTLRRPYFRKMENQDAL-VC-ISES 165
Query: 189 QPEPTLHWKKNGQFIDLESSKSLDLSRRTLGWLRVRPL----YWNVARPRANLNPRYIGR 244
PEP + W ES K + + L AR N +GR
Sbjct: 166 VPEPIVEWVLCDS--QGESCKEESPAVVKKEEKVLHELFGTDIRCCAR-----NE--LGR 216
Query: 245 KMASLLIWNHPRVNR---------------LSCFA-EGSPLPSVFWTQEGSQVL---MFP 285
+ L + + + + C A + + W E + F
Sbjct: 217 ECTRLFTIDLNQTPQTTLPQLFLKVGEPLWIRCKAVHVNHGFGLTWELENKALEEGNYFE 276
Query: 286 GNAYGHLHVTQE-GTLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVREFCVLPKGTFT 344
+ Y + V + D G++ CS+ + A + + E T
Sbjct: 277 MSTYSTNRTMIRILFAFVSSVARNDTGYYTCSSSKHPSQS---ALVTIVE---KGFINAT 330
Query: 345 LGQPNLATGNSDLRRIAC-----------------------------------DLRETDS 369
+ + + +
Sbjct: 331 NSSEDYEIDQYEEFCFSVRFKAYPQIRCTWTFSRKSFPCEQKGLDNGYSISKFCNHKHQP 390
Query: 370 GLYTCTASSESGETSWSASLSVEPRPGPHAVH 401
G Y A ++ + + +L++ H H
Sbjct: 391 GEYIFHAENDDAQFTKMFTLNIRSGTKHHHHH 422
Score = 136 bits (344), Expect = 5e-35
Identities = 29/287 (10%), Positives = 61/287 (21%), Gaps = 35/287 (12%)
Query: 71 KPFPISEPSDATVLSGSVVEFVCRVGGDPLPTILWRRDDGKMPTG---RAKILDDRSLQI 127
+ VC P P + W D + + ++ +
Sbjct: 140 TLLYTLRRPYFRKMENQDA-LVCISESVPEPIVEWVLCDSQGESCKEESPAVVKKEEKVL 198
Query: 128 ENVGPQDEGLYICDVENLVGSISLRASLTVHLLRDDFRAEPKDTRVASGETALLECGPPK 187
+ D C N +G R L + + GE + C
Sbjct: 199 HELFGTD---IRCCARNELGRECTRLFTID--LNQTPQTTLPQLFLKVGEPLWIRCKAVH 253
Query: 188 GQPEPTLHWKKNGQFIDLESSKSLDLSRRTLGWLRVRPLY----------------WNVA 231
L W+ + ++ + + +R+ +
Sbjct: 254 VNHGFGLTWELENKALEEGNYFEMSTYSTNRTMIRILFAFVSSVARNDTGYYTCSSSKHP 313
Query: 232 RPRANLN----PRYIGRKMASLLIWNHPRVNRLSCFAEGSPLPSVFWTQEGSQVLMFPGN 287
A + + + S + P WT
Sbjct: 314 SQSALVTIVEKGFINATNSSEDYEIDQYEEFCFSVRFKAYPQIRCTWTFSRKSFPC---- 369
Query: 288 AYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVRE 334
+ ++ K G ++ A + T L +R
Sbjct: 370 --EQKGLDNGYSISKFCNHKHQPGEYIFHAENDDAQFTKMFTLNIRS 414
Score = 96.3 bits (239), Expect = 2e-21
Identities = 43/333 (12%), Positives = 80/333 (24%), Gaps = 82/333 (24%)
Query: 123 RSLQIENVGPQDEGLYICDVENLVGSISLRASLTVHLLRDDFRAEPKDTRVASGETALLE 182
+ + + Y E+ L +L E V + L+
Sbjct: 15 INHKNNDSSVGKSSSYPMVSESPED---LGCALRPQSSG--TVYEAAAVEVDVSASITLQ 69
Query: 183 CGPPKGQPEPTLHWKKNGQFIDLESSKSLDLSRRTLGWL---RVRP----LYWNVARPRA 235
+ W L DL R + + ++ Y +
Sbjct: 70 V-LVDAPGNISCLWVFKHS--SLNCQPHFDLQNRGVVSMVILKMTETQAGEYLLFIQ--- 123
Query: 236 NLNPRYIGRKMASLLIWNHPRVNR-------------LSCFAEGSPLPSVFWTQEGSQVL 282
+ + ++ I N L C +E P P V W SQ
Sbjct: 124 --SEATNYTILFTVSIRNTLLYTLRRPYFRKMENQDALVCISESVPEPIVEWVLCDSQGE 181
Query: 283 MFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVRE-------- 334
+ V ++ + + D C A + G R F
Sbjct: 182 SCKEESPA---VVKKEEKVLHELFGTD---IRCCARNELGRECTRLFTIDLNQTPQTTLP 235
Query: 335 ------------FCVLPKGTFTL-------GQP---------NLATGNSDLRRIAC---- 362
C + + + N + RI
Sbjct: 236 QLFLKVGEPLWIRCKAVHVNHGFGLTWELENKALEEGNYFEMSTYSTNRTMIRILFAFVS 295
Query: 363 DLRETDSGLYTCTASSESGETSWSASLSVEPRP 395
+ D+G YTC++S + SA +++ +
Sbjct: 296 SVARNDTGYYTCSSSKHPSQ---SALVTIVEKG 325
>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker,
immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A
Length = 642
Score = 163 bits (415), Expect = 3e-43
Identities = 58/371 (15%), Positives = 102/371 (27%), Gaps = 71/371 (19%)
Query: 71 KPFPISEPSDATVLSGSVVEFVCRVGGDPLPTILWRRDDGKMPTGRAKIL-DDRSLQIEN 129
I+ + V V C + W + + R ++ D+R+L + +
Sbjct: 289 PKPFITSNNSNPVEDEDAVALTCEPEIQNTTYLWWVNNQSLPVSPRLQLSNDNRTLTLLS 348
Query: 130 VGPQDEGLYICDVENLVGSI-SLRASLTVHLLRDDFRAEPKDTRVASGETALLECGPPKG 188
V D G Y C ++N + S L V DD P T G L C
Sbjct: 349 VTRNDVGPYECGIQNELSVDHSDPVILNVLYGPDDPTISPSYTYYRPGVNLSLSC-HAAS 407
Query: 189 QPEPTLHWKKNGQFIDLESSKSLDLSR--------------------RTLGWLRVRPLYW 228
P W +G + ++ L +S +
Sbjct: 408 NPPAQYSWLIDGNI--QQHTQELFISNITEKNSGLYTCQANNSASGHSRTTVKTITVSA- 464
Query: 229 NVARPRANLNPRYIGRKMASLLIWNHPRVNRLSCFAEGSPLPSVFWTQEGSQVLMFPGNA 288
+ +P + N ++ +C E + W G +
Sbjct: 465 ELPKPSISSNNSKPVEDKDAVA---------FTCEPEAQN-TTYLWWVNGQSLP-----V 509
Query: 289 YGHLHVTQE-GTLRIQGVQKEDAGFFVCSALSVAGS-TTVRAFLQVRE-----------F 335
L ++ TL + V + DA +VC + + + L V
Sbjct: 510 SPRLQLSNGNRTLTLFNVTRNDARAYVCGIQNSVSANRSDPVTLDVLYGPDTPIISPPDS 569
Query: 336 CVLPKGTFTL-----GQPNLA----------TGNSDLRRIACDLRETDSGLYTCTASSES 380
L L P+ L IA + ++G Y C S+ +
Sbjct: 570 SYLSGANLNLSCHSASNPSPQYSWRINGIPQQHTQVL-FIA-KITPNNNGTYACFVSNLA 627
Query: 381 GETSWSASLSV 391
+ S S+
Sbjct: 628 TGRNNSIVKSI 638
Score = 155 bits (394), Expect = 2e-40
Identities = 66/404 (16%), Positives = 107/404 (26%), Gaps = 91/404 (22%)
Query: 72 PFPISEPSDATVLSGSVVEFVCRVGGDPLPTILWRRDDGKMPTGRAKILDDRSLQIENVG 131
P P + + SG + C +P W + + + L I N+
Sbjct: 204 DAPTISPLNTSYRSGENLNLSCHAASNPPAQYSWFVNGTFQQST-------QELFIPNIT 256
Query: 132 PQDEGLYICDVENLVGSISLRASLTVHLLRD---DFRAEPKDTRVASGETALLECGPPKG 188
+ G Y C N ++ T+ + + F V + L C P+
Sbjct: 257 VNNSGSYTCQAHNSDTGLNRTTVTTITVYAEPPKPFITSNNSNPVEDEDAVALTC-EPEI 315
Query: 189 QPEPTLHWKKNGQFIDLESSKSLDLSRRTLGWLRVRP----LYWNVARPRANLNPRYIGR 244
Q T W N Q + + L RTL L V Y + N +
Sbjct: 316 QN-TTYLWWVNNQSLPVSPRLQLSNDNRTLTLLSVTRNDVGPYECGIQ-----NELSVDH 369
Query: 245 KMASLL-------IWNHPRVN---------RLSCFAEGSPLPSVFWTQEGSQVLMFPGNA 288
+L LSC A +P W +G+
Sbjct: 370 SDPVILNVLYGPDDPTISPSYTYYRPGVNLSLSCHAASNPPAQYSWLIDGN--------- 420
Query: 289 YGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVREFCVLPK-------- 340
L I + ++++G + C A + A + + LPK
Sbjct: 421 ----IQQHTQELFISNITEKNSGLYTCQANNSASGHSRTTVKTITVSAELPKPSISSNNS 476
Query: 341 ------GTFTL-----GQP------------------NLATGNSDLRRIACDLRETDSGL 371
Q L+ GN L + ++ D+
Sbjct: 477 KPVEDKDAVAFTCEPEAQNTTYLWWVNGQSLPVSPRLQLSNGNRTL-TLF-NVTRNDARA 534
Query: 372 YTCTASSESGE-TSWSASLSVEPRPGPHAVHRMPDSGLFPGPPA 414
Y C + S +L V P + PDS G
Sbjct: 535 YVCGIQNSVSANRSDPVTLDVLYGP-DTPIISPPDSSYLSGANL 577
Score = 152 bits (386), Expect = 2e-39
Identities = 72/372 (19%), Positives = 116/372 (31%), Gaps = 63/372 (16%)
Query: 72 PFPISEPSDATVLSGSVVEFVCRVGGDPLPTILWRRDDGKMPTG-RAKI-LDDRSLQIEN 129
IS + V V F C T LW ++ +P R ++ +R+L + N
Sbjct: 112 KPSISSNNSKPVEDKDAVAFTCEPETQD-ATYLWWVNNQSLPVSPRLQLSNGNRTLTLFN 170
Query: 130 VGPQDEGLYICDVENLVGSI-SLRASLTVHLLRDDFRAEPKDTRVASGETALLECGPPKG 188
V D Y C+ +N V + S L V D P +T SGE L C
Sbjct: 171 VTRNDTASYKCETQNPVSARRSDSVILNVLYGPDAPTISPLNTSYRSGENLNLSCHAA-S 229
Query: 189 QPEPTLHWKKNGQFIDLESSKSLDLSR---------------RTLGWLRVRPLYWNVARP 233
P W NG F S++ L + G R V
Sbjct: 230 NPPAQYSWFVNGTFQQ--STQELFIPNITVNNSGSYTCQAHNSDTGLNRTTVTTITVYAE 287
Query: 234 RANLNPRYIGRKMASLLIWNHPRVNRLSCFAEGSPLPSVFWTQEGSQVLMFPGNAYGHLH 293
P+ S + + V L+C E + W + + L
Sbjct: 288 P----PKPFITSNNSNPVEDEDAV-ALTCEPEIQN-TTYLWWVNNQSLPV-----SPRLQ 336
Query: 294 VTQEG-TLRIQGVQKEDAGFFVCSALSVAGSTTVRAF-LQVR----------EFCVLPKG 341
++ + TL + V + D G + C + L V + G
Sbjct: 337 LSNDNRTLTLLSVTRNDVGPYECGIQNELSVDHSDPVILNVLYGPDDPTISPSYTYYRPG 396
Query: 342 -TFTL-----GQP----------NLATGNSDLRRIACDLRETDSGLYTCTASSESGETSW 385
+L P N+ +L I+ ++ E +SGLYTC A++ + S
Sbjct: 397 VNLSLSCHAASNPPAQYSWLIDGNIQQHTQEL-FIS-NITEKNSGLYTCQANNSASGHSR 454
Query: 386 SASLSVEPRPGP 397
+ ++
Sbjct: 455 TTVKTITVSAEL 466
Score = 146 bits (370), Expect = 3e-37
Identities = 48/281 (17%), Positives = 75/281 (26%), Gaps = 42/281 (14%)
Query: 72 PFPISEPSDATVLSGSVVEFVCRVGGDPLPTILWRRDDGKMPTGRAKILDDRSLQIENVG 131
P PS G + C +P W DG + + L I N+
Sbjct: 382 DDPTISPSYTYYRPGVNLSLSCHAASNPPAQYSWLI-DGNI------QQHTQELFISNIT 434
Query: 132 PQDEGLYICDVENLVGSISLRASLTVHLLRDD---FRAEPKDTRVASGETALLECGPPKG 188
++ GLY C N S T+ + + + V + C P+
Sbjct: 435 EKNSGLYTCQANNSASGHSRTTVKTITVSAELPKPSISSNNSKPVEDKDAVAFTC-EPEA 493
Query: 189 QPEPTLHWKKNGQFIDLESSKSLDLSRRTLGWLRVRP----LYWNVAR--------PRAN 236
Q T W NGQ + + L RTL V Y +
Sbjct: 494 QN-TTYLWWVNGQSLPVSPRLQLSNGNRTLTLFNVTRNDARAYVCGIQNSVSANRSDPVT 552
Query: 237 LN----PRYIGRKMASLLIWNHPRVNRLSCFAEGSPLPSVFWTQEGSQVLMFPGNAYGHL 292
L+ P + + LSC + +P P W G
Sbjct: 553 LDVLYGPDTPIISPPDSSYLSGANL-NLSCHSASNPSPQYSWRINGIP------------ 599
Query: 293 HVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVR 333
L I + + G + C ++A +
Sbjct: 600 -QQHTQVLFIAKITPNNNGTYACFVSNLATGRNNSIVKSIT 639
Score = 140 bits (353), Expect = 3e-35
Identities = 65/413 (15%), Positives = 98/413 (23%), Gaps = 93/413 (22%)
Query: 77 EPSDATVLSGSVVEFVCRVGGDPLPTILWRRDD--------------------GKMPTGR 116
E + V G V + L W + + G +GR
Sbjct: 5 ESTPFNVAEGKEVLLLVHNLPQHLFGYSWYKGERVDGNRQIIGYVIGTQQATPGPAYSGR 64
Query: 117 AKILDDRSLQIENVGPQDEGLYICDVENLVGSISLRASLTVHLLRDD---FRAEPKDTRV 173
I + SL I+N+ D G Y V A+ + + + V
Sbjct: 65 EIIYPNASLLIQNIIQNDTGFYTLHVIKSDLVNE-EATGQFRVYPELPKPSISSNNSKPV 123
Query: 174 ASGETALLECGPPKGQPEPTLHWKKNGQFIDLESSKSLDLSRRTLGWLRVRP----LYWN 229
+ C P+ Q T W N Q + + L RTL V Y
Sbjct: 124 EDKDAVAFTC-EPETQD-ATYLWWVNNQSLPVSPRLQLSNGNRTLTLFNVTRNDTASYKC 181
Query: 230 VAR--------PRANLNPRYIGRKMASLLIWNHPRVNR---LSCFAEGSPLPSVFWTQEG 278
+ LN Y + R LSC A +P W G
Sbjct: 182 ETQNPVSARRSDSVILNVLYGPDAPTISPLNTSYRSGENLNLSCHAASNPPAQYSWFVNG 241
Query: 279 SQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVREFCVL 338
+ L I + ++G + C A + + +
Sbjct: 242 T-------------FQQSTQELFIPNITVNNSGSYTCQAHNSDTGLNRTTVTTITVYAEP 288
Query: 339 PKGTFTLGQPNLATGNSDLRRIAC------------------------------------ 362
PK T N + + C
Sbjct: 289 PKPFITSNNSNPVEDEDAV-ALTCEPEIQNTTYLWWVNNQSLPVSPRLQLSNDNRTLTLL 347
Query: 363 DLRETDSGLYTCTASSESGET-SWSASLSVEPRPGPHAVHRMPDSGLFPGPPA 414
+ D G Y C +E S L+V P + PG
Sbjct: 348 SVTRNDVGPYECGIQNELSVDHSDPVILNVLYGP-DDPTISPSYTYYRPGVNL 399
Score = 113 bits (283), Expect = 2e-26
Identities = 37/164 (22%), Positives = 58/164 (35%), Gaps = 5/164 (3%)
Query: 54 GALSDDQWKLIAKEALIKPFPISEPSDATVLSGSVVEFVCRVGGDPLPTILWRRDDGKMP 113
S K I A + IS + V V F C + W
Sbjct: 450 SGHSRTTVKTITVSAELPKPSISSNNSKPVEDKDAVAFTCEPEAQNTTYLWWVNGQSLPV 509
Query: 114 TGRAKIL-DDRSLQIENVGPQDEGLYICDVENLVGSI-SLRASLTVHLLRDDFRAEPKDT 171
+ R ++ +R+L + NV D Y+C ++N V + S +L V D P D+
Sbjct: 510 SPRLQLSNGNRTLTLFNVTRNDARAYVCGIQNSVSANRSDPVTLDVLYGPDTPIISPPDS 569
Query: 172 RVASGETALLECGPPKGQPEPTLHWKKNGQFIDLESSKSLDLSR 215
SG L C P P W+ NG ++ L +++
Sbjct: 570 SYLSGANLNLSC-HSASNPSPQYSWRINGIPQQ--HTQVLFIAK 610
Score = 76.5 bits (188), Expect = 9e-15
Identities = 44/317 (13%), Positives = 74/317 (23%), Gaps = 95/317 (29%)
Query: 164 FRAEPKDTRVASGETALLECGPPKGQPEPTLHWKKNGQFIDLESSKSLDLSRRTLGWLRV 223
E VA G+ LL Q W K +D +R+ +G+
Sbjct: 2 LTIESTPFNVAEGKEVLLLVHNL-PQHLFGYSWYKGE---------RVDGNRQIIGY--- 48
Query: 224 RPLYWNVARPRANLNPRYIGRKMASLLIWN------------------------------ 253
+ A P + R I ASLLI N
Sbjct: 49 -VIGTQQATPGPAYSGREIIYPNASLLIQNIIQNDTGFYTLHVIKSDLVNEEATGQFRVY 107
Query: 254 ---------HPRVN--------RLSCFAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQ 296
+C E + W + + P
Sbjct: 108 PELPKPSISSNNSKPVEDKDAVAFTCEPETQD-ATYLWWVNNQSLPVSPRLQL----SNG 162
Query: 297 EGTLRIQGVQKEDAGFFVCSALSVAGSTTVR-AFLQVREFCVLPKGTF-----TLGQP-- 348
TL + V + D + C + + L V P + G+
Sbjct: 163 NRTLTLFNVTRNDTASYKCETQNPVSARRSDSVILNVLYGPDAPTISPLNTSYRSGENLN 222
Query: 349 -------------------NLATGNSDLRRIACDLRETDSGLYTCTASSESGETSWSASL 389
+L I ++ +SG YTC A + + +
Sbjct: 223 LSCHAASNPPAQYSWFVNGTFQQSTQEL-FIP-NITVNNSGSYTCQAHNSDTGLNRTTVT 280
Query: 390 SVEPRPGPHAVHRMPDS 406
++ P ++
Sbjct: 281 TITVYAEPPKPFITSNN 297
>1ry7_B FGFR-3, fibroblast growth factor receptor 3; FGF-FGFR complex, beta
trefoil, IG domain, growth factor/growth factor receptor
complex; 3.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4
Length = 334
Score = 157 bits (397), Expect = 5e-43
Identities = 56/321 (17%), Positives = 88/321 (27%), Gaps = 60/321 (18%)
Query: 72 PFPISEPSDATVLSGSVVEFVCRV-GGDPLPTILWRRDDGKMPTGRAKILDDRSLQIENV 130
+ SG VE C GG P+ +W +D + ++ + LQ+ N
Sbjct: 9 GPEPGQQEQLVFGSGDAVELSCPPPGGGPMGPTVWVKDGTGLVPSERVLVGPQRLQVLNA 68
Query: 131 GPQDEGLYICDVENLVGSISLRASLTVHLLRDD------------------------FRA 166
+D G Y C + + R
Sbjct: 69 SHEDSGAYSCRQRLTQRVLCHFSVRVTDAPSSGDDEDGEDEAEDTGVDTGAPYWTRPERM 128
Query: 167 EPKDTRVASGETALLECGPPKGQPEPTLHWKKNGQFIDLESSKSLDLSRRTLGWLRVRPL 226
+ K V + T C P G P P++ W KNG+ E R L + +
Sbjct: 129 DKKLLAVPAANTVRFRC-PAAGNPTPSISWLKNGREFRGEHRIGGIKLRHQQWSLVMESV 187
Query: 227 -------Y----WNVA-----------RPRANLNPRYIGRKMASLLIWNHPRVNRLSCFA 264
Y N R+ P A+ V C
Sbjct: 188 VPSDRGNYTCVVENKFGSIRQTYTLDVLERSPHRPILQAGLPANQTAVLGSDV-EFHCKV 246
Query: 265 EGSPLPSVFW-----------TQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFF 313
P + W +G+ + A + + L + V EDAG +
Sbjct: 247 YSDAQPHIQWLKHVEVNGSKVGPDGTPYVTVLKTAGANTTDKELEVLSLHNVTFEDAGEY 306
Query: 314 VCSALSVAGSTTVRAFLQVRE 334
C A + G + A+L V
Sbjct: 307 TCLAGNSIGFSHHSAWLVVLP 327
Score = 110 bits (276), Expect = 1e-26
Identities = 57/322 (17%), Positives = 86/322 (26%), Gaps = 93/322 (28%)
Query: 164 FRAEPKDTRVASGETALLECGPPKGQPEPTLHWKKNGQFIDLESSKSLDLSRRTLGWLRV 223
+ + SG+ L C PP G P W K+G L S+ + + + L L
Sbjct: 11 EPGQQEQLVFGSGDAVELSCPPPGGGPMGPTVWVKDGT--GLVPSERVLVGPQRLQVLNA 68
Query: 224 RP----LYWNVAR----------------PRANLNPRYIGRKMASLLIWNHPRVN----- 258
Y R P + + + + P
Sbjct: 69 SHEDSGAYSCRQRLTQRVLCHFSVRVTDAPSSGDDEDGEDEAEDTGVDTGAPYWTRPERM 128
Query: 259 -------------RLSCFAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGV 305
R C A G+P PS+ W + G + G Q+ +L ++ V
Sbjct: 129 DKKLLAVPAANTVRFRCPAAGNPTPSISWLKNGRE-FRGEHRIGGIKLRHQQWSLVMESV 187
Query: 306 QKEDAGFFVCSALSVAGSTTVRAFLQVRE--------FCVLP------------------ 339
D G + C + GS L V E LP
Sbjct: 188 VPSDRGNYTCVVENKFGSIRQTYTLDVLERSPHRPILQAGLPANQTAVLGSDVEFHCKVY 247
Query: 340 ----------KGTFTLGQPNLATGNSDLRRIAC----------------DLRETDSGLYT 373
K G G + + ++ D+G YT
Sbjct: 248 SDAQPHIQWLKHVEVNGSKVGPDGTPYVTVLKTAGANTTDKELEVLSLHNVTFEDAGEYT 307
Query: 374 CTASSESGETSWSASLSVEPRP 395
C A + G + SA L V P
Sbjct: 308 CLAGNSIGFSHHSAWLVVLPAE 329
Score = 83.9 bits (207), Expect = 9e-18
Identities = 26/112 (23%), Positives = 37/112 (33%), Gaps = 17/112 (15%)
Query: 64 IAKEALIKPFPISEPSDATVLSGSVVEFVCRVGGDPLPTILWRRDDG------------- 110
+ + P++ T + GS VEF C+V D P I W +
Sbjct: 215 LERSPHRPILQAGLPANQTAVLGSDVEFHCKVYSDAQPHIQWLKHVEVNGSKVGPDGTPY 274
Query: 111 ----KMPTGRAKILDDRSLQIENVGPQDEGLYICDVENLVGSISLRASLTVH 158
K + L + NV +D G Y C N +G A L V
Sbjct: 275 VTVLKTAGANTTDKELEVLSLHNVTFEDAGEYTCLAGNSIGFSHHSAWLVVL 326
Score = 42.3 bits (99), Expect = 4e-04
Identities = 24/143 (16%), Positives = 47/143 (32%), Gaps = 25/143 (17%)
Query: 363 DLRETDSGLYTCTASSESGETSWSASLSVEPRPGPHAVHRMPDSGLFPGPPAAPVILNTT 422
+ +D G YTC ++ G + +L V R + L G PA N T
Sbjct: 186 SVVPSDRGNYTCVVENKFGSIRQTYTLDVLERSPHRPI-------LQAGLPA-----NQT 233
Query: 423 R---GSVTLG---WGEPEPR------GGGVAPVIGYTVEYFSSDLQTGWVVAAHRITSTS 470
V + + +P +G + + L+T +
Sbjct: 234 AVLGSDVEFHCKVYSDAQPHIQWLKHVEVNGSKVGPDGTPYVTVLKTAGANTTDKELEV- 292
Query: 471 ITVSDLKPDTSYMFIVRAENSHG 493
+++ ++ + + + A NS G
Sbjct: 293 LSLHNVTFEDAGEYTCLAGNSIG 315
Score = 36.1 bits (83), Expect = 0.032
Identities = 20/150 (13%), Positives = 32/150 (21%), Gaps = 31/150 (20%)
Query: 363 DLRETDSGLYTCTASSESGETSWSASLSVEPRPGPHAVHRMPDSGLFPGPPAAPVILNTT 422
+ DSG Y+C + + ++ AP
Sbjct: 67 NASHEDSGAYSCRQRLTQRVLCHFSVRVTDAPSSGDDEDGEDEAEDTGVDTGAPYWTRPE 126
Query: 423 RG-----SVTLG---------WGEPEP-----RGGGVAPVIGYTVEYFSSDLQTGWVVAA 463
R +V G P P + G G W
Sbjct: 127 RMDKKLLAVPAANTVRFRCPAAGNPTPSISWLKNGR--EFRGEHRIGGIKLRHQQW---- 180
Query: 464 HRITSTSITVSDLKPDTSYMFIVRAENSHG 493
S+ + + P + EN G
Sbjct: 181 ------SLVMESVVPSDRGNYTCVVENKFG 204
>3ejj_X Macrophage colony-stimulating factor 1 receptor; growth
factor-receptor complex, receptor tyrosine kinase, CY
4-helix bundle, ATP-binding; HET: NAG; 2.40A {Mus
musculus}
Length = 289
Score = 155 bits (393), Expect = 5e-43
Identities = 47/283 (16%), Positives = 84/283 (29%), Gaps = 25/283 (8%)
Query: 72 PFPISE-PSDATVLSGSVVEFVCRVGGDPLPTILWRRDDGKMPTGRAKILDDRSLQIENV 130
I + V G V C G ++ W T + +L N
Sbjct: 4 APVIEPSGPELVVEPGETVTLRCVSNG----SVEWDGPISPYWTLDPE-SPGSTLTTRNA 58
Query: 131 GPQDEGLYICDVENLVGSISLRASLTVHLLRDDFRAEPKDTRVASGETALLECGPPKGQP 190
++ G Y C + S L V + ++ V G+ A+L C
Sbjct: 59 TFKNTGTYRCTELEDPMAGSTTIHLYVKDPAHSWNLLAQEVTVVEGQEAVLPCLITDPAL 118
Query: 191 EPTLHWKKNGQFIDLESSKSLDLSRRTLGWLRVRPLYWNVARPRANLNPRYIGRKMASLL 250
+ ++ + G L + R + + L N + +N R L
Sbjct: 119 KDSVSLMREGGRQVLRKTVYFFSPWRGFIIRKAKVLDSNTYVCKTMVNGRESTSTGIWLK 178
Query: 251 IWNHPRVN------------------RLSCFAEGSPLPSVFWTQEGSQVLMFPGNA-YGH 291
+ ++ C A + + + G L P N+ +
Sbjct: 179 VNRVHPEPPQIKLEPSKLVRIRGEAAQIVCSATNAEVGFNVILKRGDTKLEIPLNSDFQD 238
Query: 292 LHVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVRE 334
+ + L + V +DAG + C A + G+ T QV E
Sbjct: 239 NYYKKVRALSLNAVDFQDAGIYSCVASNDVGTRTATMNFQVVE 281
Score = 78.5 bits (193), Expect = 3e-16
Identities = 22/115 (19%), Positives = 36/115 (31%), Gaps = 7/115 (6%)
Query: 51 GARGALSDDQWKLIAKEALIKPFPISEPSDATVLSGSVVEFVCRVGGDPLPTILWRRDDG 110
R + S W + + P EPS + G + VC + + +
Sbjct: 166 NGRESTSTGIWLKVNRVHPEPPQIKLEPSKLVRIRGEAAQIVCSATNAEVGFNVILKRGD 225
Query: 111 KMPT-------GRAKILDDRSLQIENVGPQDEGLYICDVENLVGSISLRASLTVH 158
R+L + V QD G+Y C N VG+ + + V
Sbjct: 226 TKLEIPLNSDFQDNYYKKVRALSLNAVDFQDAGIYSCVASNDVGTRTATMNFQVV 280
Score = 77.7 bits (191), Expect = 7e-16
Identities = 41/293 (13%), Positives = 75/293 (25%), Gaps = 72/293 (24%)
Query: 167 EPKDTRVASGETALLECGPPKGQPEPTLHWKKNGQFIDLESSKSLDLSRRTLGWLRVRP- 225
+ V GET L C ++ W + + TL
Sbjct: 10 SGPELVVEPGETVTLRC-----VSNGSVEWDGPISPYW---TLDPESPGSTLTTRNATFK 61
Query: 226 ---LYWNVARP-------RANLN----PRYIGRKMASLLIWNHPRVNRLSCFAEGSPL-P 270
Y +L + + L C L
Sbjct: 62 NTGTYRCTELEDPMAGSTTIHLYVKDPAHSWNLLAQEVTVVEGQEA-VLPCLITDPALKD 120
Query: 271 SVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSA-LSVAGSTTVRAF 329
SV +EG + ++ + I+ + D+ +VC ++ ST+ +
Sbjct: 121 SVSLMREGGRQVLRKTV----YFFSPWRGFIIRKAKVLDSNTYVCKTMVNGRESTSTGIW 176
Query: 330 LQVREFCVLP------------------------------------KGTFTLGQPNLATG 353
L+V P +G L P +
Sbjct: 177 LKVNRVHPEPPQIKLEPSKLVRIRGEAAQIVCSATNAEVGFNVILKRGDTKLEIPLNSDF 236
Query: 354 NSDLRRIACDLR-----ETDSGLYTCTASSESGETSWSASLSVEPRPGPHAVH 401
+ + L D+G+Y+C AS++ G + + + V H H
Sbjct: 237 QDNYYKKVRALSLNAVDFQDAGIYSCVASNDVGTRTATMNFQVVESHHHH-HH 288
>2y25_A Myomesin; structural protein, sarcomere, M-BAND,
immunoglobulin-like D; 3.50A {Homo sapiens}
Length = 317
Score = 150 bits (379), Expect = 9e-41
Identities = 51/317 (16%), Positives = 84/317 (26%), Gaps = 53/317 (16%)
Query: 67 EALIKPFPISEPSDATVLSGSVVEFVCRV-GGDPLPTILWRRDDGKMPTG-RAKILDD-R 123
+ P E V V C+V I+W +D+ ++ + D
Sbjct: 3 DPFTGPH-FVEYLSWEVTGECNVLLKCKVANIKKETHIVWYKDEREISVDEKHDFKDGIC 61
Query: 124 SLQIENVGPQDEGLYICDVENLVGSISLRASLTVHLLRDDFRAEPKDTRVASG------- 176
+L I +D G+Y +++ G R L + E S
Sbjct: 62 TLLITEFSKKDAGIYEVILKDDRGKDKSRLKLVDE-AFKELMMEVCKKIALSATDLKIQS 120
Query: 177 --ETALLECGPPKGQPEPTLHWKKNGQFIDL----------------------------- 205
E L + ++W NG I
Sbjct: 121 TAEGIQLYSFVTYYVEDLKVNWSHNGSAIRYSDRVKTGVTGEQIWLQINEPTPNDKGKYV 180
Query: 206 --------ESSKSLDLSRRTLGWLRVRPLYWNVARPRANLNPRYIGRKMASLLIWNHPRV 257
K++DLS + A R +G + I +
Sbjct: 181 MELFDGKTGHQKTVDLSGQAYDEAYAEFQRLKQAAIAEKNRARVLGGLPDVVTIQEGKAL 240
Query: 258 NRLSCFAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSA 317
L+C G P P V W + + L + + I GV D+G +
Sbjct: 241 -NLTCNVWGDPPPEVSWLKNE-KALASDDHCNLKFEAGRTAYFTINGVSTADSGKYGLVV 298
Query: 318 LSVAGSTTVRAFLQVRE 334
+ GS T + V
Sbjct: 299 KNKYGSETSDFTVSVFI 315
Score = 88.0 bits (218), Expect = 4e-19
Identities = 39/305 (12%), Positives = 77/305 (25%), Gaps = 83/305 (27%)
Query: 167 EPKDTRVASGETALLECGPPKGQPEPTLHWKKNGQFIDLESSKSLDLSRRTLGWLRVRP- 225
E V LL+C + E + W K+ + I ++ TL
Sbjct: 12 EYLSWEVTGECNVLLKCKVANIKKETHIVWYKDEREISVDEKHDFKDGICTLLITEFSKK 71
Query: 226 ---LYWNVAR-------PRANLN---PRYIGRKMASLLIWNHPRVNRLSCFAEGSPL--- 269
+Y + + R L + + ++ + + + ++ AEG L
Sbjct: 72 DAGIYEVILKDDRGKDKSRLKLVDEAFKELMMEVCKKIALSATDL-KIQSTAEGIQLYSF 130
Query: 270 -------PSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAG 322
V W+ GS + + ++ L+I D G +V
Sbjct: 131 VTYYVEDLKVNWSHNGSAIR--YSDRVKTGVTGEQIWLQINEPTPNDKGKYVMELFDGKT 188
Query: 323 STTVRAFLQVREFCVLPKGTFTLGQPNL-----------------------------ATG 353
L + + L Q + G
Sbjct: 189 GHQKTVDLSGQAYDEAYAEFQRLKQAAIAEKNRARVLGGLPDVVTIQEGKALNLTCNVWG 248
Query: 354 N----------------SDLRRIACD-----------LRETDSGLYTCTASSESGETSWS 386
+ D + + + DSG Y ++ G +
Sbjct: 249 DPPPEVSWLKNEKALASDDHCNLKFEAGRTAYFTINGVSTADSGKYGLVVKNKYGSETSD 308
Query: 387 ASLSV 391
++SV
Sbjct: 309 FTVSV 313
Score = 87.3 bits (216), Expect = 5e-19
Identities = 23/125 (18%), Positives = 42/125 (33%), Gaps = 5/125 (4%)
Query: 39 SRRSRSIFGSVLGARGALSDDQWKLIAKEALIKPFPISEPSDATVLSGSVVEFVCRVGGD 98
+++ + G A + E P T+ G + C V GD
Sbjct: 190 HQKTVDLSGQAYDEAYAEFQRLKQAAIAEKNRARVLGGLPDVVTIQEGKALNLTCNVWGD 249
Query: 99 PLPTILWRRDDGKM-PTGRAKILDDR----SLQIENVGPQDEGLYICDVENLVGSISLRA 153
P P + W +++ + + + I V D G Y V+N GS +
Sbjct: 250 PPPEVSWLKNEKALASDDHCNLKFEAGRTAYFTINGVSTADSGKYGLVVKNKYGSETSDF 309
Query: 154 SLTVH 158
+++V
Sbjct: 310 TVSVF 314
Score = 73.0 bits (179), Expect = 3e-14
Identities = 35/235 (14%), Positives = 57/235 (24%), Gaps = 63/235 (26%)
Query: 259 RLSCFAEGS-PLPSVFWTQEGSQVLMFPGNAYGHLHVTQEG--TLRIQGVQKEDAGFFVC 315
L C + W ++ ++ + H ++G TL I K+DAG +
Sbjct: 25 LLKCKVANIKKETHIVWYKDEREI------SVDEKHDFKDGICTLLITEFSKKDAGIYEV 78
Query: 316 SALSVAGSTTVRAFLQV---REFCVLPKGTFTLGQPNL-----ATG-------------- 353
G R L +E + L +L A G
Sbjct: 79 ILKDDRGKDKSRLKLVDEAFKELMMEVCKKIALSATDLKIQSTAEGIQLYSFVTYYVEDL 138
Query: 354 ------------NSDLRRIACD----------LRETDSGLYTCTASSESGETSWSASLSV 391
SD + D G Y + LS
Sbjct: 139 KVNWSHNGSAIRYSDRVKTGVTGEQIWLQINEPTPNDKGKYVMELFDGKTGHQKTVDLSG 198
Query: 392 EPRPGPHAVHRMPDSGLFPGPPAAPVILNTTR-------GSVTLG---WGEPEPR 436
+ +A + A V+ ++ L WG+P P
Sbjct: 199 QAYDEAYAEFQRLKQAAIAEKNRARVLGGLPDVVTIQEGKALNLTCNVWGDPPPE 253
>3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical
bundle cytokine, hematopoietic cytokine-receptor
complex, cell surface, EXTR complex; 7.80A {Homo
sapiens}
Length = 527
Score = 152 bits (384), Expect = 9e-40
Identities = 63/488 (12%), Positives = 138/488 (28%), Gaps = 104/488 (21%)
Query: 72 PFPISEPSDATVLSGSVVEFVCRVGGDPLPTILWRRDDGKMPTGRAKILDDR---SLQIE 128
+ E + V + + V + LW + L +R S+ I
Sbjct: 49 SGTVYEAAAVEVDVSASITLQVLVDAPGNISCLWVFKHSSLNCQPHFDLQNRGVVSMVIL 108
Query: 129 NVGPQDEGLYICDVENLVGSISLRASLTVHLLRDDFRAEPKDTRVASGETALLECGPPKG 188
+ G Y+ +++ + ++ ++++ + R + AL C +
Sbjct: 109 KMTETQAGEYLLFIQSEATNYTILFTVSIRN-TLLYTLRRPYFRKMENQDAL-VC-ISES 165
Query: 189 QPEPTLHWKKNGQFIDLESSKSLDLSRRTLGWLR--VRPLYWNVARPRANLNPR-YIGRK 245
PEP + W + +S + ++ L AR N +
Sbjct: 166 VPEPIVEWVLCDSQGESCKEESPAVVKKEEKVLHELFGTDIRCCAR-----NELGRECTR 220
Query: 246 MASLLIWNHPRVN------------RLSCFA-EGSPLPSVFWTQEGSQVL---MFPGNAY 289
+ ++ + P+ + C A + + W E + F + Y
Sbjct: 221 LFTIDLNQTPQTTLPQLFLKVGEPLWIRCKAVHVNHGFGLTWELENKALEEGNYFEMSTY 280
Query: 290 GHLHVTQE-GTLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVRE-------------- 334
+ V + D G++ CS+ + A + + E
Sbjct: 281 STNRTMIRILFAFVSSVARNDTGYYTCSSSKHPSQS---ALVTIVEKGFINATNSSEDYE 337
Query: 335 --------FCVLPKG-------------TFTLGQPNLATGNSDLRRIACDLRETDSGLYT 373
F V K +F Q L G S + + + G Y
Sbjct: 338 IDQYEEFCFSVRFKAYPQIRCTWTFSRKSFPCEQKGLDNGYS-ISKF--CNHKHQPGEYI 394
Query: 374 CTASSESGETSWSASLSVEPRPGPHAVHRMPDSGLFPGPPAAPVILNTTRGSVTL---GW 430
A ++ + + +L++ P +L +
Sbjct: 395 FHAENDDAQFTKMFTLNIR---------------------RKPQVL-AEASASQASCFSD 432
Query: 431 GEPEP-----RGGGVAPVIGYTVEYFSSDLQTGWVVAAHRITSTSITVSDLKPDTSYMFI 485
G P P + +P + + + V ++S+++ +S + ++
Sbjct: 433 GYPLPSWTWKKCSDKSPNCTEEITEGVWNRKANRKVFGQWVSSSTLNMS--EAIKGFLVK 490
Query: 486 VRAENSHG 493
A NS G
Sbjct: 491 CCAYNSLG 498
Score = 142 bits (359), Expect = 2e-36
Identities = 39/386 (10%), Positives = 81/386 (20%), Gaps = 74/386 (19%)
Query: 71 KPFPISEPSDATVLSGSVVEFVCRVGGDPLPTILWRRDDGKMPTGRAKILDDRSLQIENV 130
+ VC P P + W D + + + + + + +
Sbjct: 140 TLLYTLRRPYFRKMENQDA-LVCISESVPEPIVEWVLCDSQGESCKEESPAVVKKEEKVL 198
Query: 131 GPQDEGLYICDVENLVGSISLRASLTVHLLRDDFRAEPKDTRVASGETALLECGPPKGQP 190
C N +G T+ L + + GE + C
Sbjct: 199 HELFGTDIRCCARNELGR-ECTRLFTID-LNQTPQTTLPQLFLKVGEPLWIRCKAVHVNH 256
Query: 191 EPTLHWKKNGQFIDLESSKSLDLSRRTLGWLRVRPLYWNVARP--------RANLNPRYI 242
L W+ + ++ + + +R+ + + ++
Sbjct: 257 GFGLTWELENKALEEGNYFEMSTYSTNRTMIRILFAFVSSVARNDTGYYTCSSS-KHP-- 313
Query: 243 GRKMASLLIWNHPRVN----------------RLSCFAEGSPLPSVFWTQEGSQVLMFPG 286
+ A + I +N S + P WT
Sbjct: 314 -SQSALVTIVEKGFINATNSSEDYEIDQYEEFCFSVRFKAYPQIRCTWTFSRKSF----- 367
Query: 287 NAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVRE------------ 334
+ ++ K G ++ A + T L +R
Sbjct: 368 -PCEQKGLDNGYSISKFCNHKHQPGEYIFHAENDDAQFTKMFTLNIRRKPQVLAEASASQ 426
Query: 335 ----------------FCVLPKGT----FTLGQPNLATGNSDLRRIACDL-----RETDS 369
C T G N +
Sbjct: 427 ASCFSDGYPLPSWTWKKCSDKSPNCTEEITEGVWNRKANRKVFGQWVSSSTLNMSEAIKG 486
Query: 370 GLYTCTASSESGETSWSASLSVEPRP 395
L C A + G + + L+
Sbjct: 487 FLVKCCAYNSLGTSCETILLNSPGPF 512
Score = 128 bits (322), Expect = 1e-31
Identities = 42/296 (14%), Positives = 80/296 (27%), Gaps = 42/296 (14%)
Query: 70 IKPFPISEPSDATVLSGSVVEFVCRV-GGDPLPTILWRRDDGKMPTGRAKILDDRS---- 124
+ P + + G + C+ + + W ++ + G + S
Sbjct: 226 LNQTPQTTLPQLFLKVGEPLWIRCKAVHVNHGFGLTWELENKALEEGNYFEMSTYSTNRT 285
Query: 125 ------LQIENVGPQDEGLYICDVENLVGSISLRASLTVHLL-RDDFRAEPKDTRVASGE 177
+ +V D G Y C A +T+ + +D + E
Sbjct: 286 MIRILFAFVSSVARNDTGYYTCSSSKHPSQS---ALVTIVEKGFINATNSSEDYEIDQYE 342
Query: 178 TALLECGPPKGQPEPTLHWKKNGQFIDLESSKSLDLSRRTLGWLRVRP----LYWNVARP 233
K P+ W + + E + + Y A
Sbjct: 343 EFCFSV-RFKAYPQIRCTWTFSRKSFPCEQKGLDNGYSISK--FCNHKHQPGEYIFHAE- 398
Query: 234 RANLNPRYIGRKMASLLIWNHPRV------NRLSCFAEGSPLPSVFWTQEGSQVLMFPG- 286
N KM +L I P+V ++ SCF++G PLPS W + +
Sbjct: 399 ----NDDAQFTKMFTLNIRRKPQVLAEASASQASCFSDGYPLPSWTWKKCSDKSPNCTEE 454
Query: 287 --------NAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVRE 334
A + + + + C A + G++ L
Sbjct: 455 ITEGVWNRKANRKVFGQWVSSSTLNMSEAIKGFLVKCCAYNSLGTSCETILLNSPG 510
Score = 86.3 bits (213), Expect = 7e-18
Identities = 39/332 (11%), Positives = 79/332 (23%), Gaps = 82/332 (24%)
Query: 124 SLQIENVGPQDEGLYICDVENLVGSISLRASLTVHLLRDDFRAEPKDTRVASGETALLEC 183
+ + + Y E+ + E V + L+
Sbjct: 16 NHKNNDSSVGKSSSYPMVSESPEDL-----GCALRPQSSGTVYEAAAVEVDVSASITLQV 70
Query: 184 GPPKGQPEPTLHWKKNGQFIDLESSKSLDLSRRTLGWL---RVRP----LYWNVARPRAN 236
+ W L DL R + + ++ Y +
Sbjct: 71 -LVDAPGNISCLWVFKHS--SLNCQPHFDLQNRGVVSMVILKMTETQAGEYLLFIQ---- 123
Query: 237 LNPRYIGRKMASLLIWNHPRV-------------NRLSCFAEGSPLPSVFWTQEGSQVLM 283
+ + ++ I N + L C +E P P V W SQ
Sbjct: 124 -SEATNYTILFTVSIRNTLLYTLRRPYFRKMENQDALVCISESVPEPIVEWVLCDSQGES 182
Query: 284 FPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRAF-LQVREF------- 335
+ + + + + C A + G R F + + +
Sbjct: 183 CKEESPAVV------KKEEKVLHELFGTDIRCCARNELGRECTRLFTIDLNQTPQTTLPQ 236
Query: 336 ------------CVLPKG----TFTLGQPNLATGNSDLRRIAC----------------D 363
C T N A + ++
Sbjct: 237 LFLKVGEPLWIRCKAVHVNHGFGLTWELENKALEEGNYFEMSTYSTNRTMIRILFAFVSS 296
Query: 364 LRETDSGLYTCTASSESGETSWSASLSVEPRP 395
+ D+G YTC++S + SA +++ +
Sbjct: 297 VARNDTGYYTCSSSKHPSQ---SALVTIVEKG 325
>4dkd_C Macrophage colony-stimulating factor 1 receptor; dimeric four-helix
bundle cytokine, receptor tyrosine kinase glycosylation;
HET: NAG BMA; 3.00A {Homo sapiens}
Length = 292
Score = 145 bits (367), Expect = 2e-39
Identities = 45/283 (15%), Positives = 77/283 (27%), Gaps = 24/283 (8%)
Query: 71 KPFPISEPSDATVLSGSVVEFVCRVGGDPLPTILWRRDDGKMPTGRAKILDDRSLQIENV 130
P + V G+ V C G ++ W T L N
Sbjct: 4 IPVIEPSVPELVVKPGATVTLRCVGNG----SVEWDGPPSPHWT-LYSDGSSSILSTNNA 58
Query: 131 GPQDEGLYICDVENLVGSISLRASLTVHLLRDDFRAEPKDTRVASGETALLECGPPKGQP 190
Q+ G Y C S L V + ++ V + ALL C
Sbjct: 59 TFQNTGTYRCTEPGDPLGGSAAIHLYVKDPARPWNVLAQEVVVFEDQDALLPCLLTDPVL 118
Query: 191 EPTLHWKKNGQFIDLESSKSLDLSRRTLGWLRVRPLYWNVARPRANLNPRYIGRKMASLL 250
E + + + + R + + + A + R + L
Sbjct: 119 EAGVSLVRVRGRPLMRHTNYSFSPWHGFTIHRAKFIQSQDYQCSALMGGRKVMSISIRLK 178
Query: 251 IWNHPRVN------------------RLSCFAEGSPLPSVFWTQEGSQVLMFPGNAYGH- 291
+ ++ C A + + Q + L P + H
Sbjct: 179 VQKVIPGPPALTLVPAELVRIRGEAAQIVCSASSVDVNFDVFLQHNNTKLAIPQQSDFHN 238
Query: 292 LHVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVRE 334
+ TL + V + AG + C A +V G + F +V E
Sbjct: 239 NRYQKVLTLNLDQVDFQHAGNYSCVASNVQGKHSTSMFFRVVE 281
Score = 76.5 bits (188), Expect = 2e-15
Identities = 20/115 (17%), Positives = 39/115 (33%), Gaps = 7/115 (6%)
Query: 51 GARGALSDDQWKLIAKEALIKPFPISEPSDATVLSGSVVEFVCRVGGDPLPTILWRRDDG 110
G R +S + K P P++ + G + VC + ++ + +
Sbjct: 166 GGRKVMSISIRLKVQKVIPGPPALTLVPAELVRIRGEAAQIVCSASSVDVNFDVFLQHNN 225
Query: 111 KM--PTGRAKILDDR-----SLQIENVGPQDEGLYICDVENLVGSISLRASLTVH 158
++ ++R +L ++ V Q G Y C N+ G S V
Sbjct: 226 TKLAIPQQSDFHNNRYQKVLTLNLDQVDFQHAGNYSCVASNVQGKHSTSMFFRVV 280
Score = 73.1 bits (179), Expect = 2e-14
Identities = 43/294 (14%), Positives = 70/294 (23%), Gaps = 71/294 (24%)
Query: 167 EPKDTRVASGETALLECGPPKGQPEPTLHWKKNGQFIDLESSKSLDLSRRTLGWLRVRP- 225
+ V G T L C ++ W + D S L
Sbjct: 10 SVPELVVKPGATVTLRC-----VGNGSVEWDGP---PSPHWTLYSDGSSSILSTNNATFQ 61
Query: 226 ---LYWNVARP-------RANLN---PRYIGRKMASLLIWNHPRVNRLSCFAEGSPL-PS 271
Y +L P +A ++ + L C L
Sbjct: 62 NTGTYRCTEPGDPLGGSAAIHLYVKDPARPWNVLAQEVVVFEDQDALLPCLLTDPVLEAG 121
Query: 272 VFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSA-LSVAGSTTVRAFL 330
V + + LM N + I + + + CSA + ++ L
Sbjct: 122 VSLVRVRGRPLMRHTN----YSFSPWHGFTIHRAKFIQSQDYQCSALMGGRKVMSISIRL 177
Query: 331 QVREFCVLP-------------KG-TFTL------------------GQPNLATGNSDLR 358
+V++ P +G + SD
Sbjct: 178 KVQKVIPGPPALTLVPAELVRIRGEAAQIVCSASSVDVNFDVFLQHNNTKLAIPQQSDFH 237
Query: 359 RIACDLRET---------DSGLYTCTASSESGETSWSASLSVEPRPG--PHAVH 401
T +G Y+C AS+ G+ S S V G H H
Sbjct: 238 NNRYQKVLTLNLDQVDFQHAGNYSCVASNVQGKHSTSMFFRVVESAGNSHHHHH 291
>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain,
vegfr-2, growth factor receptor, VEGF LI
hormone-signaling protein complex, angiogenesis; 3.20A
{Homo sapiens} PDB: 3v6b_R
Length = 772
Score = 153 bits (387), Expect = 3e-39
Identities = 65/442 (14%), Positives = 102/442 (23%), Gaps = 113/442 (25%)
Query: 71 KPFPISEP---SDATVLSGSVVEFVCRVGGDPLPTILWRRDDGKMPTGRAKILDDRSLQI 127
KPF S G V + G P P I W ++ G I L I
Sbjct: 327 KPFVAFGSGMESLVEATVGERVRIPAKYLGYPPPEIKWYKN-GIPLESNHTIKAGHVLTI 385
Query: 128 ENVGPQDEGLYICDVENLVGSISLRASLTVHLLR----DDFRAEPKDTRVASGETALLEC 183
V +D G Y + N + +++ + + G T L C
Sbjct: 386 MEVSERDTGNYTVILTNPISKEKQSHVVSLVVYVPPQIGEKSLISPVDSYQYGTTQTLTC 445
Query: 184 GPPKGQPEP-TLHWKKNGQFIDLESSKSLDLSRRTLGWLRVRPLYWNVARPRANLNPRYI 242
P P +HW + R + + +N
Sbjct: 446 -TVYAIPPPHHIHWYWQLEEECANEPSQAVSVTNPYPCEEWRSVEDFQGGNKIEVNKNQF 504
Query: 243 ----------------------------------GRKMASLLIWNHPRVN---------- 258
G ++ S + P +
Sbjct: 505 ALIEGKNKTVSTLVIQAANVSALYKCEAVNKVGRGERVISFHVTRGPEITLQPDMQPTEQ 564
Query: 259 ---RLSCFAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQE------------------ 297
L C A+ S ++ W + G Q L
Sbjct: 565 ESVSLWCTADRSTFENLTWYKLGPQPLPIHVGELPTPVCKNLDTLWKLNATMFSNSTNDI 624
Query: 298 GTLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVREFCVLPKGTFTLGQPNLATGNSDL 357
+ ++ +D G +VC A Q+ T T N T +
Sbjct: 625 LIMELKNASLQDQGDYVCLAQDRKTKKRHCVVRQLTVL-ERVAPTITGNLENQTTSIGES 683
Query: 358 RRIAC-------------------------------------DLRETDSGLYTCTASSES 380
++C +R+ D GLYTC A S
Sbjct: 684 IEVSCTASGNPPPQIMWFKDNETLVEDSGIVLKDGNRNLTIRRVRKEDEGLYTCQACSVL 743
Query: 381 GETSWSASLSVEPRPGPHAVHR 402
G A +E + R
Sbjct: 744 GCAKVEAFFIIEGAQEKTNLER 765
Score = 137 bits (346), Expect = 4e-34
Identities = 69/519 (13%), Positives = 132/519 (25%), Gaps = 104/519 (20%)
Query: 69 LIKPFPISEPSDATVLSGSVVEFVCRVGGDPLPTILWRRDDGKMPTGRAKILDD-----R 123
L P + T+ + + ++ CR G LW + +
Sbjct: 29 LDLPRLSIQKDILTIKANTTLQITCR--GQRDLDWLWPNNQSGSEQRVEVTECSDGLFCK 86
Query: 124 SLQIENVGPQDEGLYICDVENLVGSISLRASLTVH----LLRDDFRAEPKDTRVASGETA 179
+L I V D G Y C + + + + + + +T
Sbjct: 87 TLTIPKVIGNDTGAYKCFYRETDLASVIYVYVQDYRSPFIASVSDQHGVVYITENKNKTV 146
Query: 180 LLECGPPKGQPEPTLHWKKNGQFIDLESSKSLDLSRRTLGWLRVRP----LYWNVARPRA 235
++ C +L + + + ++ S++ + + A+
Sbjct: 147 VIPCLGSISNLNVSLCARYPEKRFVPDGNRISWDSKKGFTIPSYMISYAGMVFCEAK--- 203
Query: 236 NLNPRYIGRKMASLLIWNHPRVNR------------------LSCFAEGSPLPSVFWTQE 277
+ + +++ R+ L+C A + + E
Sbjct: 204 --INDESYQSIMYIVVVVGYRIYDVVLSPSHGIELSVGEKLVLNCTARTELNVGIDFNWE 261
Query: 278 GSQVLMFPGNAYGHLHVTQEG--------TLRIQGVQKEDAGFFVCSALSVAGSTTVRAF 329
TQ G TL I GV + D G + C+A S + F
Sbjct: 262 YPSSKHQHKKLVNRDLKTQSGSEMKKFLSTLTIDGVTRSDQGLYTCAASSGLMTKKNSTF 321
Query: 330 LQVREFCVLPKGTFTLGQPNLATGNS-DLRRIAC-------------------------- 362
++V E P F G +L + RI
Sbjct: 322 VRVHE---KPFVAFGSGMESLVEATVGERVRIPAKYLGYPPPEIKWYKNGIPLESNHTIK 378
Query: 363 --------DLRETDSGLYTCTASSESGETSWSASLSVEPRPGPHAVHRMPDSGLFPGPPA 414
++ E D+G YT ++ + S +S+ P + S +
Sbjct: 379 AGHVLTIMEVSERDTGNYTVILTNPISKEKQSHVVSLVVYVPPQIGEKSLISPVDSYQYG 438
Query: 415 APVILN-TTRGS---VTLGW---GEPEPRGGGVAPVIGYTVEYFSSDLQTGWVVAAHRIT 467
L T + W E E V ++I
Sbjct: 439 TTQTLTCTVYAIPPPHHIHWYWQLEEECANEPSQAVSVTNPYPCEEWRSVEDFQGGNKIE 498
Query: 468 -------------STSITVSDLKPDTSYMFIVRAENSHG 493
T T+ + S ++ A N G
Sbjct: 499 VNKNQFALIEGKNKTVSTLVIQAANVSALYKCEAVNKVG 537
Score = 121 bits (303), Expect = 9e-29
Identities = 58/361 (16%), Positives = 95/361 (26%), Gaps = 67/361 (18%)
Query: 70 IKPFPISEPSDATVLSGSVVEFVCRVGGDPLPTILWRRDDGKMPTGRAKILDDR------ 123
I +S + G + C + I + + K+++
Sbjct: 223 IYDVVLSPSHGIELSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSG 282
Query: 124 --------SLQIENVGPQDEGLYICDVENLVGSISLRASLTVHL--LRDDFRAEPKDTRV 173
+L I+ V D+GLY C + + + + VH
Sbjct: 283 SEMKKFLSTLTIDGVTRSDQGLYTCAASSGLMTKKNSTFVRVHEKPFVAFGSGMESLVEA 342
Query: 174 ASGETALLECGPPKGQPEPTLHWKKNGQFIDLESSKSLDLSRRTLGWLRVRP----LY-- 227
GE + G P P + W KNG ++ S + L + V Y
Sbjct: 343 TVGERVRIPA-KYLGYPPPEIKWYKNGIPLE---SNHTIKAGHVLTIMEVSERDTGNYTV 398
Query: 228 --WNVA-----RPRANLN---PRYIGRKMASLLIWNHPRVNR--LSCFAEGSPLP-SVFW 274
N +L P IG K + ++ L+C P P + W
Sbjct: 399 ILTNPISKEKQSHVVSLVVYVPPQIGEKSLISPVDSYQYGTTQTLTCTVYAIPPPHHIHW 458
Query: 275 TQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVRE 334
+ + + A+SV + V +
Sbjct: 459 YWQLEEECANEPS----------------------------QAVSVTNPYPCEEWRSVED 490
Query: 335 FCVLPKGTFTLGQPNLATGNSDLRRIACDLRETDSGLYTCTASSESGETSWSASLSVEPR 394
F K Q L G + S LY C A ++ G S V
Sbjct: 491 FQGGNKIEVNKNQFALIEGKNKTVSTLVIQAANVSALYKCEAVNKVGRGERVISFHVTRG 550
Query: 395 P 395
P
Sbjct: 551 P 551
Score = 118 bits (296), Expect = 8e-28
Identities = 35/304 (11%), Positives = 74/304 (24%), Gaps = 42/304 (13%)
Query: 64 IAKEALIKPFPISEPSDATVLSGSVVEFVCRVGGDPLPTILWRRDDGK--MPTGRAKILD 121
+ T V C L L R K +P G D
Sbjct: 121 YRSPFIASVSDQHGVVYITENKNKTVVIPCLGSISNLNVSLCARYPEKRFVPDGNRISWD 180
Query: 122 -DRSLQIENVGPQDEGLYICDVENLVGSISLRASLTVHLLRDDFR---AEPKDTRVASGE 177
+ I + G+ C+ + S + V + + + ++ GE
Sbjct: 181 SKKGFTIPSYMISYAGMVFCEAKINDESYQSIMYIVVVVGYRIYDVVLSPSHGIELSVGE 240
Query: 178 TALLECGPPKGQPEPTLHWKKNGQFIDLESSKSLDLSRRTLGWLRVRPLYWNVARPRANL 237
+L C + + + + + K ++ +T ++ +
Sbjct: 241 KLVLNC-TARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLSTLTIDGVTR 299
Query: 238 -----------NPRYIGRKMASLLIWNHPRVN-----------------RLSCFAEGSPL 269
+ + + + P V R+ G P
Sbjct: 300 SDQGLYTCAASSGLMTKKNSTFVRVHEKPFVAFGSGMESLVEATVGERVRIPAKYLGYPP 359
Query: 270 PSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRAF 329
P + W + G + N + L I V + D G + +
Sbjct: 360 PEIKWYKNGIPL---ESNHT----IKAGHVLTIMEVSERDTGNYTVILTNPISKEKQSHV 412
Query: 330 LQVR 333
+ +
Sbjct: 413 VSLV 416
Score = 108 bits (271), Expect = 8e-25
Identities = 54/343 (15%), Positives = 89/343 (25%), Gaps = 87/343 (25%)
Query: 70 IKPFPISEPSDATVLSGSVVEFVCRVGGDPLP-TILWRRDDGK----------------- 111
I + P D + G+ C V P P I W +
Sbjct: 423 IGEKSLISPVD-SYQYGTTQTLTCTVYAIPPPHHIHWYWQLEEECANEPSQAVSVTNPYP 481
Query: 112 -----------------MPTGRAKILDDRS---LQIENVGPQDEGLYICDVENLVGSISL 151
+ + +++ ++ + LY C+ N VG
Sbjct: 482 CEEWRSVEDFQGGNKIEVNKNQFALIEGKNKTVSTLVIQAANVSALYKCEAVNKVGRGER 541
Query: 152 RASLTVHLLRDDFRAEPKDTRVASGETALLECGPPKGQPEPTLHWKK-NGQFIDLESSKS 210
S V + +P E+ L C L W K Q + + +
Sbjct: 542 VISFHVTRGPE-ITLQPDMQ-PTEQESVSLWC-TADRSTFENLTWYKLGPQPLPIHVGEL 598
Query: 211 LDLSRRTLGWL---------------------RVRP----LY-------WNVARPRANLN 238
+ L L Y R
Sbjct: 599 PTPVCKNLDTLWKLNATMFSNSTNDILIMELKNASLQDQGDYVCLAQDRKTKKRHCVVRQ 658
Query: 239 -------PRYIGRKMASLLIWNHPRVNRLSCFAEGSPLPSVFWTQEGSQVLMFPGNAYGH 291
I + + + +SC A G+P P + W ++ ++ G
Sbjct: 659 LTVLERVAPTITGNLENQTTSIGESI-EVSCTASGNPPPQIMWFKDNETLV----EDSGI 713
Query: 292 LHVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVRE 334
+ L I+ V+KED G + C A SV G V AF +
Sbjct: 714 VLKDGNRNLTIRRVRKEDEGLYTCQACSVLGCAKVEAFFIIEG 756
Score = 99.4 bits (247), Expect = 8e-22
Identities = 43/353 (12%), Positives = 79/353 (22%), Gaps = 89/353 (25%)
Query: 127 IENVGPQDEGLYICDVENLVGSISLRASLTVHLLRDDFRAEPKDTRVASGETALLECGPP 186
+++ L++C SL + + + + T + C
Sbjct: 1 MQSKVLLAVALWLCVETRAASVGLPSVSLDL----PRLSIQKDILTIKANTTLQITC--- 53
Query: 187 KGQPEPTLHWKKNGQFIDLESSKSLDLSRRTLGWLRVRPL-------YWNVARPRANLNP 239
+GQ + W N + + L + + Y R
Sbjct: 54 RGQRDLDWLWPNNQSGSEQRVEVTECSDGLFCKTLTIPKVIGNDTGAYKCFYR-----ET 108
Query: 240 RYIGRKMASLLIWNHPRVN-------------------RLSCFAEGSPLPSVFWTQEGSQ 280
+ + P + + C S L + +
Sbjct: 109 DLASVIYVYVQDYRSPFIASVSDQHGVVYITENKNKTVVIPCLGSISNLNVSLCARYPEK 168
Query: 281 VLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVREFCVLPK 340
+ GN + + I AG C A S ++ V +
Sbjct: 169 RFVPDGN---RISWDSKKGFTIPSYMISYAGMVFCEAKINDESYQSIMYIVVVVGYRIYD 225
Query: 341 --------------GTFTL-----GQPN------------------------LATGNSDL 357
L + N S++
Sbjct: 226 VVLSPSHGIELSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEM 285
Query: 358 RRIACDL-----RETDSGLYTCTASSESGETSWSASLSVEPRPGPHAVHRMPD 405
++ L +D GLYTC ASS S + V +P M
Sbjct: 286 KKFLSTLTIDGVTRSDQGLYTCAASSGLMTKKNSTFVRVHEKPFVAFGSGMES 338
Score = 86.3 bits (213), Expect = 9e-18
Identities = 24/97 (24%), Positives = 42/97 (43%), Gaps = 2/97 (2%)
Query: 64 IAKEALIKPFPISEPSDATVLSGSVVEFVCRVGGDPLPTILWRRDDGKMPTGRAKIL--D 121
+ + P + T G +E C G+P P I+W +D+ + +L
Sbjct: 659 LTVLERVAPTITGNLENQTTSIGESIEVSCTASGNPPPQIMWFKDNETLVEDSGIVLKDG 718
Query: 122 DRSLQIENVGPQDEGLYICDVENLVGSISLRASLTVH 158
+R+L I V +DEGLY C +++G + A +
Sbjct: 719 NRNLTIRRVRKEDEGLYTCQACSVLGCAKVEAFFIIE 755
Score = 57.5 bits (138), Expect = 1e-08
Identities = 41/315 (13%), Positives = 88/315 (27%), Gaps = 73/315 (23%)
Query: 230 VARPRANLNPRYIGRKMASLLIWNHPRVNRLSCFAEGSPLPSVFW------TQEGSQVLM 283
V P +L+ + + L I + + +++C G W +++ +V
Sbjct: 22 VGLPSVSLDLPRLSIQKDILTIKANTTL-QITC--RGQRDLDWLWPNNQSGSEQRVEVTE 78
Query: 284 FPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVREFCVLPKGTF 343
+ TL I V D G + C ++ + ++Q + +
Sbjct: 79 CSDGLFC-------KTLTIPKVIGNDTGAYKCFYRETDLASVIYVYVQDYRSPFIASVSD 131
Query: 344 TLGQPNL-------------ATGN----------------SDLRRIACDLRET------- 367
G + + + D RI+ D ++
Sbjct: 132 QHGVVYITENKNKTVVIPCLGSISNLNVSLCARYPEKRFVPDGNRISWDSKKGFTIPSYM 191
Query: 368 --DSGLYTCTASSESGETSWSASLSVEPRPGPHAVHRMPDSG--LFPGPPAAPVILN-TT 422
+G+ C A + V + V P G L G ++LN T
Sbjct: 192 ISYAGMVFCEAKINDESYQSIMYIVVVVGYRIYDVVLSPSHGIELSVGE---KLVLNCTA 248
Query: 423 RGS----VTLGWGEPEPRGGGVAPVIGYTVEYFSSDLQTGWVVAAHRITSTSITVSDLKP 478
R + W P + V S+++ +++T+ +
Sbjct: 249 RTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKF---------LSTLTIDGVTR 299
Query: 479 DTSYMFIVRAENSHG 493
++ A +
Sbjct: 300 SDQGLYTCAASSGLM 314
Score = 47.8 bits (113), Expect = 1e-05
Identities = 28/229 (12%), Positives = 54/229 (23%), Gaps = 59/229 (25%)
Query: 302 IQGVQKEDAGFFVCSALSVAGSTTVRAFLQVREFCVLPK-------GTFTL---GQPNL- 350
+Q ++C A L + + T + GQ +L
Sbjct: 1 MQSKVLLAVALWLCVETRAASVGLPSVSLDLPRLSIQKDILTIKANTTLQITCRGQRDLD 60
Query: 351 -------ATGNSDLRRIACD------------LRETDSGLYTCTASSESGETSWSASLSV 391
+ + C + D+G Y C + +
Sbjct: 61 WLWPNNQSGSEQRVEVTECSDGLFCKTLTIPKVIGNDTGAYKCFYRETDLASVIYVYVQD 120
Query: 392 EPRPGPHAVHRMPDSGLFPGPPAAPVILN----TTRGSVTLGWGEPEPRGGGVAPVIGYT 447
P +V V++ + +V+L PE R
Sbjct: 121 YRSPFIASVSDQHGVVYITENKNKTVVIPCLGSISNLNVSLCARYPEKR----------- 169
Query: 448 VEYFSSDLQTGWVVAAHRITSTS---ITVSDLKPDTSYMFIVRAENSHG 493
+V +RI+ S T+ + M A+ +
Sbjct: 170 -----------FVPDGNRISWDSKKGFTIPSYMISYAGMVFCEAKINDE 207
>2v9r_A Roundabout homolog 1; proto-oncogene, differentiation,
phosphorylation, disease MU neuronal development,
immunoglobulin domain, chemotaxis; 2.00A {Homo sapiens}
PDB: 2v9q_A
Length = 212
Score = 135 bits (341), Expect = 1e-36
Identities = 57/150 (38%), Positives = 73/150 (48%), Gaps = 12/150 (8%)
Query: 70 IKPFPISEPSDATVLSGSVVEFVCRVGGDPLPTILWRRD------DGKMPTGRAKILDDR 123
P + PSD V G C+ G P PTI W + D P +L
Sbjct: 8 FPPRIVEHPSDLIVSKGEPATLNCKAEGRPTPTIEWYKGGERVETDKDDPRSHRMLLPSG 67
Query: 124 SLQIENVGP-----QDEGLYICDVENLVGSI-SLRASLTVHLLRDDFRAEPKDTRVASGE 177
SL + DEG+Y+C N +G S ASL V +LRDDFR P D VA GE
Sbjct: 68 SLFFLRIVHGRKSRPDEGVYVCVARNYLGEAVSHDASLEVAILRDDFRQNPSDVMVAVGE 127
Query: 178 TALLECGPPKGQPEPTLHWKKNGQFIDLES 207
A++EC PP+G PEPT+ WKK+G +D +
Sbjct: 128 PAVMECQPPRGHPEPTISWKKDGSPLDDKD 157
Score = 84.5 bits (209), Expect = 8e-19
Identities = 49/211 (23%), Positives = 76/211 (36%), Gaps = 38/211 (18%)
Query: 153 ASLTVHLLRDDFRAEPKDTRVASGETALLECGPPKGQPEPTLHWKKNGQFIDLESSKSLD 212
SL P D V+ GE A L C +G+P PT+ W K G+ ++ +
Sbjct: 1 GSLRQEDFPPRIVEHPSDLIVSKGEPATLNCKA-EGRPTPTIEWYKGGERVETDKDDPR- 58
Query: 213 LSRRTL---GWLRVRPL------------YWNVAR--------PRANLN----PRYIGRK 245
S R L G L + Y VAR A+L +
Sbjct: 59 -SHRMLLPSGSLFFLRIVHGRKSRPDEGVYVCVARNYLGEAVSHDASLEVAILRDDFRQN 117
Query: 246 MASLLIWNHPRVNRLSCFA-EGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQG 304
+ +++ + C G P P++ W ++GS + + + G L I
Sbjct: 118 PSDVMVAVGEPA-VMECQPPRGHPEPTISWKKDGSPL-----DDKDERITIRGGKLMITY 171
Query: 305 VQKEDAGFFVCSALSVAGSTTVR-AFLQVRE 334
+K DAG +VC ++ G A L V E
Sbjct: 172 TRKSDAGKYVCVGTNMVGERESEVAELTVLE 202
Score = 82.9 bits (205), Expect = 3e-18
Identities = 28/96 (29%), Positives = 39/96 (40%), Gaps = 3/96 (3%)
Query: 66 KEALIKPFPISEPSDATVLSGSVVEFVCRV-GGDPLPTILWRRDDGKMPTG-RAKILDDR 123
+ A+++ PSD V G C+ G P PTI W++D + +
Sbjct: 106 EVAILRDDFRQNPSDVMVAVGEPAVMECQPPRGHPEPTISWKKDGSPLDDKDERITIRGG 165
Query: 124 SLQIENVGPQDEGLYICDVENLVGSI-SLRASLTVH 158
L I D G Y+C N+VG S A LTV
Sbjct: 166 KLMITYTRKSDAGKYVCVGTNMVGERESEVAELTVL 201
Score = 75.2 bits (185), Expect = 1e-15
Identities = 40/179 (22%), Positives = 61/179 (34%), Gaps = 44/179 (24%)
Query: 259 RLSCFAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGV-----QKEDAGFF 313
L+C AEG P P++ W + G +V + H + G+L + + D G +
Sbjct: 28 TLNCKAEGRPTPTIEWYKGGERVETDKDDPRSHRMLLPSGSLFFLRIVHGRKSRPDEGVY 87
Query: 314 VCSALSVAGSTTVR-AFLQVREF----------------------CVLPKGT-------- 342
VC A + G A L+V C P+G
Sbjct: 88 VCVARNYLGEAVSHDASLEVAILRDDFRQNPSDVMVAVGEPAVMECQPPRGHPEPTISWK 147
Query: 343 -----FTLGQPNLATGNSDLRRIACDLRETDSGLYTCTASSESGE-TSWSASLSVEPRP 395
+ L I R++D+G Y C ++ GE S A L+V RP
Sbjct: 148 KDGSPLDDKDERITIRGGKL-MIT-YTRKSDAGKYVCVGTNMVGERESEVAELTVLERP 204
>2vr9_A Roundabout 1, ROBO; immunoglobulin-like domain, AXON guidance, cell
adhesion, immunoglobulin domain; 3.2A {Drosophila
melanogaster} PDB: 2vra_A*
Length = 217
Score = 134 bits (339), Expect = 2e-36
Identities = 68/155 (43%), Positives = 81/155 (52%), Gaps = 9/155 (5%)
Query: 71 KPFPISEPSDATVLSGSVVEFVCRVGGDPLPTILWRRDDGKMPTG----RAKILDDRSL- 125
P I P+D V C+V G P PTI W +D + T D +L
Sbjct: 9 SPRIIEHPTDLVVKKNEPATLNCKVEGKPEPTIEWFKDGEPVSTNEKKSHRVQFKDGALF 68
Query: 126 ---QIENVGPQDEGLYICDVENLVGSI-SLRASLTVHLLRDDFRAEPKDTRVASGETALL 181
++ QD G Y C +N VG S ASL + +LRDDFR EPKDTRVA GETALL
Sbjct: 69 FYRTMQGKKEQDGGEYWCVAKNRVGQAVSRHASLQIAVLRDDFRVEPKDTRVAKGETALL 128
Query: 182 ECGPPKGQPEPTLHWKKNGQFIDLESSKSLDLSRR 216
ECGPPKG PEPTL W K+G +D + S S R
Sbjct: 129 ECGPPKGIPEPTLIWIKDGVPLDDLKAMSFGASSR 163
Score = 89.9 bits (223), Expect = 1e-20
Identities = 44/198 (22%), Positives = 73/198 (36%), Gaps = 29/198 (14%)
Query: 164 FRAEPKDTRVASGETALLECGPPKGQPEPTLHWKKNGQFIDLESSKS--LDLSRRTLGWL 221
P D V E A L C +G+PEPT+ W K+G+ + KS + L +
Sbjct: 12 IIEHPTDLVVKKNEPATLNCKV-EGKPEPTIEWFKDGEPVSTNEKKSHRVQFKDGALFFY 70
Query: 222 RVRP--------LYWNVAR--------PRANLN----PRYIGRKMASLLIWNHPRVNRLS 261
R YW VA+ A+L + + L
Sbjct: 71 RTMQGKKEQDGGEYWCVAKNRVGQAVSRHASLQIAVLRDDFRVEPKDTRVAKGETA-LLE 129
Query: 262 CF-AEGSPLPSVFWTQEGSQVLMFPGNAY---GHLHVTQEGTLRIQGVQKEDAGFFVCSA 317
C +G P P++ W ++G + ++ + + G L I V+ D G + C A
Sbjct: 130 CGPPKGIPEPTLIWIKDGVPLDDLKAMSFGASSRVRIVDGGNLLISNVEPIDEGNYKCIA 189
Query: 318 LSVAGS-TTVRAFLQVRE 334
++ G+ + A L V+
Sbjct: 190 QNLVGTRESSYAKLIVQV 207
Score = 84.9 bits (210), Expect = 6e-19
Identities = 34/102 (33%), Positives = 46/102 (45%), Gaps = 11/102 (10%)
Query: 68 ALIKPFPISEPSDATVLSGSVVEFVC-RVGGDPLPTILWRRDD---------GKMPTGRA 117
A+++ EP D V G C G P PT++W +D + R
Sbjct: 105 AVLRDDFRVEPKDTRVAKGETALLECGPPKGIPEPTLIWIKDGVPLDDLKAMSFGASSRV 164
Query: 118 KILDDRSLQIENVGPQDEGLYICDVENLVGSI-SLRASLTVH 158
+I+D +L I NV P DEG Y C +NLVG+ S A L V
Sbjct: 165 RIVDGGNLLISNVEPIDEGNYKCIAQNLVGTRESSYAKLIVQ 206
Score = 69.9 bits (171), Expect = 8e-14
Identities = 41/192 (21%), Positives = 65/192 (33%), Gaps = 51/192 (26%)
Query: 259 RLSCFAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTL----RIQGVQKEDAGFFV 314
L+C EG P P++ W ++G V + H ++G L +QG +++D G +
Sbjct: 28 TLNCKVEGKPEPTIEWFKDGEPVSTNEKKS--HRVQFKDGALFFYRTMQGKKEQDGGEYW 85
Query: 315 CSALSVAGST-TVRAFLQVREF----------------------CVLPKGT--------- 342
C A + G + A LQ+ C PKG
Sbjct: 86 CVAKNRVGQAVSRHASLQIAVLRDDFRVEPKDTRVAKGETALLECGPPKGIPEPTLIWIK 145
Query: 343 --FTLGQPNLATGNSDLR---------RIACDLRETDSGLYTCTASSESGE-TSWSASLS 390
L + + R I+ ++ D G Y C A + G S A L
Sbjct: 146 DGVPLDDLKAMSFGASSRVRIVDGGNLLIS-NVEPIDEGNYKCIAQNLVGTRESSYAKLI 204
Query: 391 VEPRPGPHAVHR 402
V+ + H H
Sbjct: 205 VQVKAAAHHHHH 216
>3o4o_C Interleukin-1 receptor type 2; cytokine-receptor complex,
beta-trefoil, IG-like fold, immun; HET: NAG; 3.30A {Homo
sapiens}
Length = 339
Score = 136 bits (344), Expect = 9e-36
Identities = 46/318 (14%), Positives = 81/318 (25%), Gaps = 56/318 (17%)
Query: 72 PFPISEPSDATVLSGSVVEFVC-------RVGGDPLPTILWRRDDGKMPTGRAK----IL 120
F L G V C P + W ++D +
Sbjct: 19 RFRGRHYKREFRLEGEPVALRCPQVPYWLWASVSPRINLTWHKNDSARTVPGEEETRMWA 78
Query: 121 DDRSLQIENVGPQDEGLYICDVENLVGSISLRASLTVHLLRDDFRAE-PKDTRVASGETA 179
D +L + +D G Y+C N + L V D F + +
Sbjct: 79 QDGALWLLPALQEDSGTYVCTTRNASYCDKMSIELRVFENTDAFLPFISYPQILTLSTSG 138
Query: 180 LLEC----GPPKGQPEPTLHWKKNGQFIDLESSKSLDLSRR-TLGWLRVRP----LYWNV 230
+L C + + + + W K+ +D ++ K L + L V Y V
Sbjct: 139 VLVCPDLSEFTRDKTDVKIQWYKDSLLLDKDNEKFLSVRGTTHLLVHDVALEDAGYYRCV 198
Query: 231 ARPRANLNPRYIGRKMASLLIWNHPRVN-------------------RLSC---FAEGSP 268
+Y + L I + C G+P
Sbjct: 199 LTFAHE-GQQYNITRSIELRIKKKKEETIPVIISPLKTISASLGSRLTIPCKVFLGTGTP 257
Query: 269 LPSVFWTQEGSQVLMFPGNA-----YGHLHVTQEG------TLRIQGVQKEDAGF-FVCS 316
L ++ W + ++ L V +ED F C
Sbjct: 258 LTTMLWWTANDTHIESAYPGGRVTEGPRQEYSENNENYIEVPLIFDPVTREDLHMDFKCV 317
Query: 317 ALSVAGSTTVRAFLQVRE 334
+ T+R ++
Sbjct: 318 VHNTLSFQTLRTTVKEHH 335
Score = 91.3 bits (226), Expect = 3e-20
Identities = 24/153 (15%), Positives = 40/153 (26%), Gaps = 19/153 (12%)
Query: 71 KPFPISEPSDATVLSGSVVEFVCR-----VGGDPLPTILWRRDDGKMPTGRAKIL---DD 122
F + + VC I W +D + K L
Sbjct: 120 DAFLPFISYPQILTLSTSGVLVCPDLSEFTRDKTDVKIQWYKDSLLLDKDNEKFLSVRGT 179
Query: 123 RSLQIENVGPQDEGLYICDVENLVGSISLRASLTVHLLRDD--------FRAEPKDTRVA 174
L + +V +D G Y C + + ++ L + K +
Sbjct: 180 THLLVHDVALEDAGYYRCVLTFAHEGQQYNITRSIELRIKKKKEETIPVIISPLKTISAS 239
Query: 175 SGETALLEC--GPPKGQPEPTLHW-KKNGQFID 204
G + C G P T+ W N I+
Sbjct: 240 LGSRLTIPCKVFLGTGTPLTTMLWWTANDTHIE 272
Score = 84.0 bits (207), Expect = 1e-17
Identities = 39/288 (13%), Positives = 74/288 (25%), Gaps = 61/288 (21%)
Query: 259 RLSCFAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSAL 318
+A SP ++ W + S Q+G L + +ED+G +VC+
Sbjct: 44 PYWLWASVSPRINLTWHKNDSART--VPGEEETRMWAQDGALWLLPALQEDSGTYVCTTR 101
Query: 319 SVAGSTTVRAFLQVRE--FCVLPKG----TFTLGQP---------NLATGN--------- 354
+ + + L+V E LP TL
Sbjct: 102 NASYCDKMSIELRVFENTDAFLPFISYPQILTLSTSGVLVCPDLSEFTRDKTDVKIQWYK 161
Query: 355 -------SDLRRIAC---------DLRETDSGLYTCTASSESGETSWSASLSVEPRPGPH 398
+ + ++ D+ D+G Y C + ++ + S+E R
Sbjct: 162 DSLLLDKDNEKFLSVRGTTHLLVHDVALEDAGYYRCVLTFAHEGQQYNITRSIELRIKKK 221
Query: 399 AVHRMPDSGLFPGPPA-------APVILNTTRGSVTLGWGEPEP-----RGGGVAPVIGY 446
+P P + + + V LG G P Y
Sbjct: 222 KEETIPV---IISPLKTISASLGSRLTIPC---KVFLGTGTPLTTMLWWTANDTHIESAY 275
Query: 447 TVEYFSSDLQTGWVVAAHRITSTSITVSDLKP-DTSYMFIVRAENSHG 493
+ + + + + D F N+
Sbjct: 276 PGGRVTEGPRQEYSENNENYIEVPLIFDPVTREDLHMDFKCVVHNTLS 323
Score = 69.7 bits (170), Expect = 5e-13
Identities = 24/118 (20%), Positives = 43/118 (36%), Gaps = 21/118 (17%)
Query: 62 KLIAKEALIKPFPISEPSDATVLSGSVVEFVCRVG---GDPLPTILWRRDDGKMP----- 113
++ K+ P IS + GS + C+V G PL T+LW +
Sbjct: 217 RIKKKKEETIPVIISPLKTISASLGSRLTIPCKVFLGTGTPLTTMLWWTANDTHIESAYP 276
Query: 114 ------TGRAKILDD------RSLQIENVGPQDEGL-YICDVENLVGSISLRASLTVH 158
R + ++ L + V +D + + C V N + +LR ++ H
Sbjct: 277 GGRVTEGPRQEYSENNENYIEVPLIFDPVTREDLHMDFKCVVHNTLSFQTLRTTVKEH 334
>1itb_B Type 1 interleukin-1 receptor; immunoglobulin fold, transmembrane,
glycoprotein, signal, complex (immunoglobulin/receptor);
2.50A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB:
1ira_Y* 4dep_B* 1g0y_R
Length = 315
Score = 134 bits (339), Expect = 2e-35
Identities = 42/308 (13%), Positives = 77/308 (25%), Gaps = 50/308 (16%)
Query: 74 PISEPSDATVLSGSVVEFVCRV-GGDPLPTILWRRDDGKMPTGRAK----ILDDRSLQIE 128
E + + C + + TI W +DD K P + L
Sbjct: 8 EREEKIILVSSANEIDVRPCPLNPNEHKGTITWYKDDSKTPVSTEQASRIHQHKEKLWFV 67
Query: 129 NVGPQDEGLYICDVENLVGSISLRASLTVHLLRDDFRAEPK---DTRVASGETALLEC-- 183
+D G Y C V N + ++ S + + ++ L C
Sbjct: 68 PAKVEDSGHYYCVVRNSSYCLRIKISAKFVENEPNLCYNAQAIFKQKLPVAGDGGLVCPY 127
Query: 184 ---GPPKGQPEPTLHWKKNGQFIDLESSKSLDLSRRTLGWLRVRP--------------- 225
+ P L W K+ + + L++ + L + V
Sbjct: 128 MEFFKNENNELPKLQWYKDCKPLLLDNIHFS-GVKDRLIVMNVAEKHRGNYTCHASYTYL 186
Query: 226 ---------LYWNVARPRANLNPRYIGRKMASLLIWNHPRVNRLSCFAEGSPLPSVFWTQ 276
+ + P + ++ + ++ L C G +W
Sbjct: 187 GKQYPITRVIEFITLEENKPTRPVIVSPANETMEVDLGSQIQ-LICNVTGQLSDIAYWKW 245
Query: 277 EGSQVLMFPG----------NAYGHLHVTQEGTLRIQGVQKED-AGFFVCSALSVAGSTT 325
GS + N T L I ++ F C A + G
Sbjct: 246 NGSVIDEDDPVLGEDYYSVENPANKRRSTLITVLNISEIESRFYKHPFTCFAKNTHGIDA 305
Query: 326 VRAFLQVR 333
L
Sbjct: 306 AYIQLIYP 313
Score = 94.8 bits (235), Expect = 2e-21
Identities = 24/159 (15%), Positives = 42/159 (26%), Gaps = 17/159 (10%)
Query: 64 IAKEALIKPFPISEPSDATVLSGSVVEFVC------RVGGDPLPTILWRRDDGKMPTGRA 117
+ + + VC + + LP + W +D +
Sbjct: 96 FVENEPNLCYNAQAIFKQKLPVAGDGGLVCPYMEFFKNENNELPKLQWYKDCKPLLLDNI 155
Query: 118 KILDDR-SLQIENVGPQDEGLYICDVENLVGSISLRASLTVHLLRDDFRAE--------- 167
+ L + NV + G Y C + + + +
Sbjct: 156 HFSGVKDRLIVMNVAEKHRGNYTCHASYTYLGKQYPITRVIEFITLEENKPTRPVIVSPA 215
Query: 168 PKDTRVASGETALLECGPPKGQPEPTLHWKKNGQFIDLE 206
+ V G L C GQ +WK NG ID +
Sbjct: 216 NETMEVDLGSQIQLIC-NVTGQLSDIAYWKWNGSVIDED 253
Score = 68.2 bits (166), Expect = 1e-12
Identities = 42/286 (14%), Positives = 80/286 (27%), Gaps = 60/286 (20%)
Query: 260 LSCFAEGSP-LPSVFWTQEGSQVLMFPGNAYGHLHVTQE-GTLRIQGVQKEDAGFFVCSA 317
C + ++ W ++ S+ P + + Q L + ED+G + C
Sbjct: 25 RPCPLNPNEHKGTITWYKDDSKT---PVSTEQASRIHQHKEKLWFVPAKVEDSGHYYCVV 81
Query: 318 LSVAGSTTVRAFLQVRE----FCVLPK----------GTFTLGQPNL----ATGN----- 354
+ + ++ + E C + G L P + N
Sbjct: 82 RNSSYCLRIKISAKFVENEPNLCYNAQAIFKQKLPVAGDGGLVCPYMEFFKNENNELPKL 141
Query: 355 ----------SDLRRIAC--------DLRETDSGLYTCTASSESGETSWSASLSVEPRPG 396
D + ++ E G YTC AS + + +E
Sbjct: 142 QWYKDCKPLLLDNIHFSGVKDRLIVMNVAEKHRGNYTCHASYTYLGKQYPITRVIEFITL 201
Query: 397 PHAVHRMPDSGLFPGPPAAPVILNTTRGSVTLG---WGEPEPR------GGGVAPVIGYT 447
P + P V L + + L G+ G +
Sbjct: 202 EENKPTRPVI-VSPANETMEVDLGSQ---IQLICNVTGQLSDIAYWKWNGSVIDEDDPVL 257
Query: 448 VEYFSSDLQTGWVVAAHRITSTSITVSDLKPDTSYMFIVRAENSHG 493
E + S + IT +I+ + + + F A+N+HG
Sbjct: 258 GEDYYSVENPANKRRSTLITVLNISEIESR-FYKHPFTCFAKNTHG 302
Score = 66.3 bits (161), Expect = 6e-12
Identities = 16/115 (13%), Positives = 36/115 (31%), Gaps = 18/115 (15%)
Query: 62 KLIAKEALIKPFPISEPSD-ATVLSGSVVEFVCRVGGDPLPTILWRRDDGKMPTGRAKIL 120
+ + +P +S ++ V GS ++ +C V G W+ + + +
Sbjct: 199 ITLEENKPTRPVIVSPANETMEVDLGSQIQLICNVTGQLSDIAYWKWNGSVIDEDDPVLG 258
Query: 121 DDRS----------------LQIENVGPQD-EGLYICDVENLVGSISLRASLTVH 158
+D L I + + + + C +N G + L
Sbjct: 259 EDYYSVENPANKRRSTLITVLNISEIESRFYKHPFTCFAKNTHGIDAAYIQLIYP 313
>2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor
tyrosine kinase, growth factor cytoki dimerization,
transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A*
Length = 524
Score = 139 bits (351), Expect = 2e-35
Identities = 44/405 (10%), Positives = 86/405 (21%), Gaps = 84/405 (20%)
Query: 72 PFPISEPSDATVLSGSVVEFVCRVGGDPLPTILWRRDDGK--MPTGRAKILDDRSLQIEN 129
+ C + + + GK R + I++
Sbjct: 115 AKLFLVDRSLYGKEDNDTLVRCPLTDPEVTNYSLKGCQGKPLPKDLRFIPDPKAGIMIKS 174
Query: 130 VGP-QDEGLYICDVENLVGS-ISLRASLTVH---LLRDDFRAEPKDTRVASGETALLECG 184
V C V+ S +S + L V + GE + C
Sbjct: 175 VKRAYHRLCLHCSVDQEGKSVLSEKFILKVRPAFKAVPVVSVSKASYLLREGEEFTVTCT 234
Query: 185 PPKGQPEPTLHWKKNGQFIDLESSKSLDLSRRT----LGWLRVRPL-------YWNVARP 233
WK+ L+ + L + + A
Sbjct: 235 IKDVSSSVYSTWKRENSQTKLQEKYNSWHHGDFNYERQATLTISSARVNDSGVFMCYAN- 293
Query: 234 RANLNPRYIGRKMASLLIWNHPRVN-----------------RLSCFAEGSPLPS-VFWT 275
N +L + + +N L E P P W
Sbjct: 294 ----NTFGSANVTTTLEVVDKGFINIFPMINTTVFVNDGENVDLIVEYEAFPKPEHQQWI 349
Query: 276 QEGSQVLM---FPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQV 332
+ ++ L + ++ + G + + + + + V
Sbjct: 350 YMNRTFTDKWEDYPKSENESNIRYVSELHLTRLKGTEGGTYTFLVSNSDVNAAIAFNVYV 409
Query: 333 RE---------------FC-------------------------VLPKGTFTLGQPNLAT 352
C VLP TL
Sbjct: 410 NTKPEILTYDRLVNGMLQCVAAGFPEPTIDWYFCPGTEQRCSASVLPVDVQTLNSSGPPF 469
Query: 353 GNSDLRRIACDLRETDSGLYTCTASSESGETSWSASLSVEPRPGP 397
G ++ +G C A ++ G+TS + + +
Sbjct: 470 GKLVVQSSIDSSAFKHNGTVECKAYNDVGKTSAYFNFAFKGNNKE 514
Score = 129 bits (325), Expect = 6e-32
Identities = 44/307 (14%), Positives = 79/307 (25%), Gaps = 48/307 (15%)
Query: 70 IKPFPISEPSDATVLSGSVVEFVCRVGGDPLPT-ILWRRDDGKMP---------TGRAKI 119
P + + G C + W+R++ + G
Sbjct: 210 AVPVVSVSKASYLLREGEEFTVTCTIKDVSSSVYSTWKRENSQTKLQEKYNSWHHGDFNY 269
Query: 120 LDDRSLQIENVGPQDEGLYICDVENLVGSISLRASLTVHLLR--DDFRAEPKDTRVASGE 177
+L I + D G+++C N GS ++ +L V + F V GE
Sbjct: 270 ERQATLTISSARVNDSGVFMCYANNTFGSANVTTTLEVVDKGFINIFPMINTTVFVNDGE 329
Query: 178 TALLECGPPKGQPEPTL-HWKKNGQFIDLESSKSLDLSRR-------TLGWLRVRP---- 225
L + P+P W + + L R++
Sbjct: 330 NVDLIV-EYEAFPKPEHQQWIYMNRTFTDKWEDYPKSENESNIRYVSELHLTRLKGTEGG 388
Query: 226 LYWNVARPRANLNPRYIGRKMASLLIWNHPRV--------NRLSCFAEGSPLPSVFWTQE 277
Y + N ++ + P + L C A G P P++ W
Sbjct: 389 TYTFLVS-----NSDVNAAIAFNVYVNTKPEILTYDRLVNGMLQCVAAGFPEPTIDWYFC 443
Query: 278 GSQVL----------MFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVR 327
+ N+ G I + G C A + G T+
Sbjct: 444 PGTEQRCSASVLPVDVQTLNSSGPPFGKLVVQSSIDSSAFKHNGTVECKAYNDVGKTSAY 503
Query: 328 AFLQVRE 334
+
Sbjct: 504 FNFAFKG 510
Score = 125 bits (315), Expect = 1e-30
Identities = 53/399 (13%), Positives = 106/399 (26%), Gaps = 81/399 (20%)
Query: 64 IAKEALIKPFPISEPSDATVLSGSVVEFVCRVGGDPLPTILWRRDDGKMPTGRAKILDDR 123
++ P SD V G + +C G + W +
Sbjct: 29 VSPGEPSPPSIHPGKSDLIVRVGDEIRLLCTDPG----FVKWTFEI----LDETNENKQN 80
Query: 124 SLQIENVGPQDEGLYICDVENLVGSISLRASLTVHLLRDDFRAEPKDTRVASGETALLEC 183
E + G Y C ++ + + + V F + L+ C
Sbjct: 81 EWITEKAEATNTGKYTCTNKHGLSN---SIYVFVRDPAKLFL-VDRSLYGKEDNDTLVRC 136
Query: 184 GPPKGQPEPTLHWKKNGQFIDLESSKSLDLSRRTLGWLRVRPLY---------------- 227
+ G+ + + D + + V+ Y
Sbjct: 137 PLTDPEVTNYSLKGCQGKPLPKDLRFIPD-PKAGIMIKSVKRAYHRLCLHCSVDQEGKSV 195
Query: 228 ----WNVARPRANLNPRYIGRKMASLLIWNHPRVNRLSCFAEGSPLP-SVFWTQEGSQVL 282
+ + A + AS L+ ++C + W +E SQ
Sbjct: 196 LSEKFILKVRPAFKAVPVVSVSKASYLLREGEEFT-VTCTIKDVSSSVYSTWKRENSQTK 254
Query: 283 M---FPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVRE---FC 336
+ + +G + ++ TL I + D+G F+C A + GS V L+V +
Sbjct: 255 LQEKYNSWHHGDFNYERQATLTISSARVNDSGVFMCYANNTFGSANVTTTLEVVDKGFIN 314
Query: 337 VLPKGTFTL----------------------------GQPNLATGNSDLRRIA------- 361
+ P T+ + +
Sbjct: 315 IFPMINTTVFVNDGENVDLIVEYEAFPKPEHQQWIYMNRTFTDKWEDYPKSENESNIRYV 374
Query: 362 -----CDLRETDSGLYTCTASSESGETSWSASLSVEPRP 395
L+ T+ G YT S+ + + ++ V +P
Sbjct: 375 SELHLTRLKGTEGGTYTFLVSNSDVNAAIAFNVYVNTKP 413
Score = 70.9 bits (173), Expect = 4e-13
Identities = 37/325 (11%), Positives = 75/325 (23%), Gaps = 76/325 (23%)
Query: 131 GPQDEGLYICDVENLVGSISLRASLTVHLLRDD---FRAEPKDTRVASGETALLECGPPK 187
G + ++C + L+ + + +V D V G+ L C
Sbjct: 3 GARGAWDFLCVLLLLLRVQTGSSQPSVSPGEPSPPSIHPGKSDLIVRVGDEIRLLC---- 58
Query: 188 GQPEPTLHWKKNGQFIDLE-SSKSLDLSRRTL---GWLRVRPLYW----NVARPRANLN- 238
+ W E + G Y + +
Sbjct: 59 -TDPGFVKWTFEILDETNENKQNEWITEKAEATNTGK------YTCTNKHGLSNSIYVFV 111
Query: 239 --PRYIGRKMASLLIWNHPRVNRLSCFAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQ 296
P + SL + C + + + L
Sbjct: 112 RDPAKLFLVDRSLYGKEDNDT-LVRCPLTDPEVTNYSLKGCQGKPLP----KDLRFIPDP 166
Query: 297 EGTLRIQGVQK-EDAGFFVCSALSVAGS-TTVRAFLQVR--------------EFCVLPK 340
+ + I+ V++ CS S + + L+VR + +
Sbjct: 167 KAGIMIKSVKRAYHRLCLHCSVDQEGKSVLSEKFILKVRPAFKAVPVVSVSKASYLLREG 226
Query: 341 GTFTL------------------GQPNLATGNSDLRRIAC------------DLRETDSG 370
FT+ + R DSG
Sbjct: 227 EEFTVTCTIKDVSSSVYSTWKRENSQTKLQEKYNSWHHGDFNYERQATLTISSARVNDSG 286
Query: 371 LYTCTASSESGETSWSASLSVEPRP 395
++ C A++ G + + +L V +
Sbjct: 287 VFMCYANNTFGSANVTTTLEVVDKG 311
Score = 44.3 bits (104), Expect = 1e-04
Identities = 22/179 (12%), Positives = 38/179 (21%), Gaps = 45/179 (25%)
Query: 259 RLSCFAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSAL 318
RL C G V WT E + + + G + C+
Sbjct: 55 RLLCTDPGF----VKWTFEILDETNENKQ----------NEWITEKAEATNTGKYTCTNK 100
Query: 319 SVAGSTTVRAFLQVREFCVLPKG-TFTLGQPNL----ATG---------NSDLRRIACDL 364
++ + ++ + L T + + DL
Sbjct: 101 HGLSNSIYVFVRDPAKLFLVDRSLYGKEDNDTLVRCPLTDPEVTNYSLKGCQGKPLPKDL 160
Query: 365 RET----------------DSGLYTCTASSESGE-TSWSASLSVEPRPGPHAVHRMPDS 406
R C+ E S L V P V + +
Sbjct: 161 RFIPDPKAGIMIKSVKRAYHRLCLHCSVDQEGKSVLSEKFILKVRPAFKAVPVVSVSKA 219
Score = 33.1 bits (75), Expect = 0.33
Identities = 20/153 (13%), Positives = 34/153 (22%), Gaps = 40/153 (26%)
Query: 308 EDAGFFVCSALSVA----GSTTVRAFLQV----------REFCVLPKGTFTL-------- 345
A F+C L + GS+ + V L
Sbjct: 5 RGAWDFLCVLLLLLRVQTGSSQPSVSPGEPSPPSIHPGKSDLIVRVGDEIRLLCTDPGFV 64
Query: 346 -----GQPNLATGNSDLRRIACDLRETDSGLYTCTASSESGETSWSASLSV----EPRPG 396
+ T++G YTCT S + V +
Sbjct: 65 KWTFEILDETNENKQNEWITE-KAEATNTGKYTCTNKHGLSN---SIYVFVRDPAKLFLV 120
Query: 397 PHAVHRMPDSGLF-----PGPPAAPVILNTTRG 424
+++ D+ P L +G
Sbjct: 121 DRSLYGKEDNDTLVRCPLTDPEVTNYSLKGCQG 153
>2yd6_A PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sapiens} PDB:
2yd7_A 2yd2_A 2yd3_A 2yd4_A* 2yd8_A* 2yd5_A* 3pxh_A
Length = 212
Score = 128 bits (324), Expect = 2e-34
Identities = 42/146 (28%), Positives = 66/146 (45%), Gaps = 13/146 (8%)
Query: 75 ISEPSDATVLSGSVVEFVCRVGGDPLPTILWRRDDGKMPTGRAKILDDR-----SLQIEN 129
P D T +SG V F+C+ GDP P I+W + K+ R ++++ L+I+
Sbjct: 10 TRTPVDQTGVSGGVASFICQATGDPRPKIVWNKKGKKVSNQRFEVIEFDDGSGSVLRIQP 69
Query: 130 VG-PQDEGLYICDVENLVGSISLRASLTVHLLRD------DFRAEPKDTRVASGETALLE 182
+ P+DE +Y C N VG IS+ LTV P+ V TA +
Sbjct: 70 LRTPRDEAIYECVASNNVGEISVSTRLTVLREDQIPRGFPTIDMGPQLKVVERTRTATML 129
Query: 183 CGPPKGQPEPTLHWKKNGQFIDLESS 208
C G P+P + W K+ +D ++
Sbjct: 130 C-AASGNPDPEITWFKDFLPVDTSNN 154
Score = 101 bits (252), Expect = 1e-24
Identities = 44/202 (21%), Positives = 70/202 (34%), Gaps = 37/202 (18%)
Query: 164 FRAEPKDTRVASGETALLECGPPKGQPEPTLHWKKNGQFIDLESSKSLDLSRRTLGWLRV 223
F P D SG A C G P P + W K G+ + + + ++ + LR+
Sbjct: 9 FTRTPVDQTGVSGGVASFICQA-TGDPRPKIVWNKKGKKVSNQRFEVIEFDDGSGSVLRI 67
Query: 224 RPL--------YWNVARPRANLNPRYIGRKMASLLIWNHPRVN----------------- 258
+PL Y VA N L + ++
Sbjct: 68 QPLRTPRDEAIYECVAS-----NNVGEISVSTRLTVLREDQIPRGFPTIDMGPQLKVVER 122
Query: 259 ----RLSCFAEGSPLPSVFWTQEGSQVLMFPGNA-YGHLHVTQEGTLRIQGVQKEDAGFF 313
+ C A G+P P + W ++ V N L G L+I+ ++ D G +
Sbjct: 123 TRTATMLCAASGNPDPEITWFKDFLPVDTSNNNGRIKQLRSESIGALQIEQSEESDQGKY 182
Query: 314 VCSALSVAGST-TVRAFLQVRE 334
C A + AG+ + A L VR
Sbjct: 183 ECVATNSAGTRYSAPANLYVRG 204
Score = 78.7 bits (194), Expect = 8e-17
Identities = 26/105 (24%), Positives = 41/105 (39%), Gaps = 10/105 (9%)
Query: 64 IAKEALIKPFP--ISEPSDATVLSGSVVEFVCRVGGDPLPTILWRRDDGKMPTG------ 115
+ ++ + + FP P V +C G+P P I W +D + T
Sbjct: 99 LREDQIPRGFPTIDMGPQLKVVERTRTATMLCAASGNPDPEITWFKDFLPVDTSNNNGRI 158
Query: 116 -RAKILDDRSLQIENVGPQDEGLYICDVENLVGS-ISLRASLTVH 158
+ + +LQIE D+G Y C N G+ S A+L V
Sbjct: 159 KQLRSESIGALQIEQSEESDQGKYECVATNSAGTRYSAPANLYVR 203
Score = 77.9 bits (192), Expect = 1e-16
Identities = 43/193 (22%), Positives = 68/193 (35%), Gaps = 55/193 (28%)
Query: 259 RLSCFAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGT---LRIQGVQ-KEDAGFFV 314
C A G P P + W ++G +V + +G+ LRIQ ++ D +
Sbjct: 25 SFICQATGDPRPKIVWNKKGKKVSNQR----FEVIEFDDGSGSVLRIQPLRTPRDEAIYE 80
Query: 315 CSALSVAGSTTVRAFLQVREFCVLPKG-----------------TFTL-----GQPN--- 349
C A + G +V L V +P+G T T+ G P+
Sbjct: 81 CVASNNVGEISVSTRLTVLREDQIPRGFPTIDMGPQLKVVERTRTATMLCAASGNPDPEI 140
Query: 350 --------LATGNSDLR------------RIACDLRETDSGLYTCTASSESGET-SWSAS 388
+ T N++ R +I E+D G Y C A++ +G S A+
Sbjct: 141 TWFKDFLPVDTSNNNGRIKQLRSESIGALQIE-QSEESDQGKYECVATNSAGTRYSAPAN 199
Query: 389 LSVEPRPGPHAVH 401
L V H H
Sbjct: 200 LYVRGTKHHHHHH 212
Score = 44.0 bits (104), Expect = 4e-05
Identities = 21/97 (21%), Positives = 27/97 (27%), Gaps = 24/97 (24%)
Query: 350 LATGNSDLRRIACDLRETDSGLYTCTASSESGETSWSASLSVEPRPGPHAVHRMPDSGLF 409
G+ + RI D +Y C AS+ GE S S L+V
Sbjct: 57 FDDGSGSVLRIQPLRTPRDEAIYECVASNNVGEISVSTRLTVLRED-------------- 102
Query: 410 PGPPAAPVILNT-TRGSVTLG---------WGEPEPR 436
P P I V G P+P
Sbjct: 103 QIPRGFPTIDMGPQLKVVERTRTATMLCAASGNPDPE 139
>1f97_A Junction adhesion molecule; immunoglobulin superfamily,
beta-sandwich fold, cell adhesion; 2.50A {Mus musculus}
SCOP: b.1.1.1 b.1.1.4
Length = 212
Score = 128 bits (322), Expect = 4e-34
Identities = 30/160 (18%), Positives = 47/160 (29%), Gaps = 13/160 (8%)
Query: 71 KPFPISEPSDATVLSGSVVEFVCRVGGDPLPTILWRRDDGKM------------PTGRAK 118
K + SD V ++ C G P + W+ G P
Sbjct: 1 KGSVYTAQSDVQVPENESIKLTCTYSGFSSPRVEWKFVQGSTTALVCYNSQITAPYADRV 60
Query: 119 ILDDRSLQIENVGPQDEGLYICDVENLVGSISLRASLTVH-LLRDDFRAEPKDTRVASGE 177
+ +V +D G Y C V G S+ + L+ + V G
Sbjct: 61 TFSSSGITFSSVTRKDNGEYTCMVSEEGGQNYGEVSIHLTVLVPPSKPTISVPSSVTIGN 120
Query: 178 TALLECGPPKGQPEPTLHWKKNGQFIDLESSKSLDLSRRT 217
A+L C G P W K+G + +K +
Sbjct: 121 RAVLTCSEHDGSPPSEYSWFKDGISMLTADAKKTRAFMNS 160
Score = 80.8 bits (199), Expect = 2e-17
Identities = 31/204 (15%), Positives = 53/204 (25%), Gaps = 39/204 (19%)
Query: 164 FRAEPKDTRVASGETALLECGPPKGQPEPTLHWKKNG----QFIDLESSKSLDLSRRTL- 218
D +V E+ L C G P + WK + S + + R
Sbjct: 4 VYTAQSDVQVPENESIKLTC-TYSGFSSPRVEWKFVQGSTTALVCYNSQITAPYADRVTF 62
Query: 219 --GWLRVRPL-------YWNVARPRANLNPRYIGRKMASLLIWNHPRVN----------- 258
+ + Y + + G L + P
Sbjct: 63 SSSGITFSSVTRKDNGEYTCMVS---EEGGQNYGEVSIHLTVLVPPSKPTISVPSSVTIG 119
Query: 259 ---RLSCFA-EGSPLPSVFWTQEGSQVLMFPGNAY------GHLHVTQEGTLRIQGVQKE 308
L+C +GSP W ++G +L + G L V
Sbjct: 120 NRAVLTCSEHDGSPPSEYSWFKDGISMLTADAKKTRAFMNSSFTIDPKSGDLIFDPVTAF 179
Query: 309 DAGFFVCSALSVAGSTTVRAFLQV 332
D+G + C A + G+ +
Sbjct: 180 DSGEYYCQAQNGYGTAMRSEAAHM 203
Score = 73.1 bits (179), Expect = 6e-15
Identities = 21/103 (20%), Positives = 32/103 (31%), Gaps = 13/103 (12%)
Query: 69 LIKPFPISEPSDATVLSGSVVEFVCRVG-GDPLPTILWRRDDGKMPTGRAK--------- 118
L+ P + ++V G+ C G P W +D M T AK
Sbjct: 102 LVPPSKPTISVPSSVTIGNRAVLTCSEHDGSPPSEYSWFKDGISMLTADAKKTRAFMNSS 161
Query: 119 ---ILDDRSLQIENVGPQDEGLYICDVENLVGSISLRASLTVH 158
L + V D G Y C +N G+ + +
Sbjct: 162 FTIDPKSGDLIFDPVTAFDSGEYYCQAQNGYGTAMRSEAAHMD 204
Score = 72.7 bits (178), Expect = 1e-14
Identities = 24/188 (12%), Positives = 38/188 (20%), Gaps = 51/188 (27%)
Query: 259 RLSCFAEGSPLPSVFWTQEGSQVLMF------PGNAYGHLHVTQEGTLRIQGVQKEDAGF 312
+L+C G P V W Y + V ++D G
Sbjct: 20 KLTCTYSGFSSPRVEWKFVQGSTTALVCYNSQITAPYADRVTFSSSGITFSSVTRKDNGE 79
Query: 313 FVCSALSVAGSTTVRAFLQVR-----EFCVLPK-------GTFTL--------------- 345
+ C G + + + L
Sbjct: 80 YTCMVSEEGGQNYGEVSIHLTVLVPPSKPTISVPSSVTIGNRAVLTCSEHDGSPPSEYSW 139
Query: 346 ---GQPNLATGNSDLRRIAC---------------DLRETDSGLYTCTASSESGETSWSA 387
G L R + DSG Y C A + G S
Sbjct: 140 FKDGISMLTADAKKTRAFMNSSFTIDPKSGDLIFDPVTAFDSGEYYCQAQNGYGTAMRSE 199
Query: 388 SLSVEPRP 395
+ ++
Sbjct: 200 AAHMDAVE 207
Score = 36.1 bits (83), Expect = 0.018
Identities = 21/140 (15%), Positives = 42/140 (30%), Gaps = 26/140 (18%)
Query: 363 DLRETDSGLYTCTASSESGETSWSASLSVEPRPGPHAVHRMPDSGLFPGPPAAPVILNTT 422
+ D+G YTC S E G+ S+ + P S + G
Sbjct: 71 SVTRKDNGEYTCMVSEEGGQNYGEVSIHLTVLVPPSKPTISVPSSVTIG----------- 119
Query: 423 RGSVTL----GWGEPEP-----RGGGVAPVIGYTVEYFSSDLQTGWVVAAHRITSTSITV 473
L G P + G ++ + + + + + + S +
Sbjct: 120 -NRAVLTCSEHDGSPPSEYSWFKDGI--SMLTADAKKTRAFMNSSFTI---DPKSGDLIF 173
Query: 474 SDLKPDTSYMFIVRAENSHG 493
+ S + +A+N +G
Sbjct: 174 DPVTAFDSGEYYCQAQNGYG 193
>3mtr_A N-CAM-1, NCAM-1, neural cell adhesion molecule 1; immunoglobulin
domain, fibronectin type III repeat, CE adhesion; 1.80A
{Homo sapiens}
Length = 215
Score = 128 bits (322), Expect = 6e-34
Identities = 43/249 (17%), Positives = 75/249 (30%), Gaps = 80/249 (32%)
Query: 259 RLSCFAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSAL 318
++C P ++ W ++G + P + Y ++ + +
Sbjct: 37 NITCEVFAYPSATISWFRDGQLL---PSSNYSNIKIYNTPS------------------- 74
Query: 319 SVAGSTTVRAFLQVREFCVLPKGTFTLGQPNLATGNSDLRRIACDLRETDSGLYTCTASS 378
++L+V E D G Y CTA +
Sbjct: 75 --------ASYLEVT-----------------------------PDSENDFGNYNCTAVN 97
Query: 379 ESGETSWSASLSVEPRPGPHAVHRMPDSGLFPGPPAAPVILNTTRGSVTLGWGEPEPRGG 438
G+ S L P P+ + + + + + EPE GG
Sbjct: 98 RIGQESLEFILVQADTPSS---------------PSIDQVEPYSS-TAQVQFDEPEATGG 141
Query: 439 GVAPVIGYTVEY---FSSDLQTGWVVAAHRITSTSITVSDLKPDTSYMFIVRAENSHGLG 495
P++ Y E+ + W A +T+ LKP+T+Y + A N GLG
Sbjct: 142 --VPILKYKAEWRAVGEEVWHSKWYDAKEASMEGIVTIVGLKPETTYAVRLAALNGKGLG 199
Query: 496 IPSPVSPIT 504
S S
Sbjct: 200 EISAASEFK 208
Score = 74.9 bits (184), Expect = 2e-15
Identities = 26/99 (26%), Positives = 35/99 (35%), Gaps = 7/99 (7%)
Query: 65 AKEALIKPFPISEPSDATVLSGSVVEFVCRVGGDPLPTILWRRDDGKMPTG---RAKILD 121
+ P + P G+ V C V P TI W RD +P+ KI +
Sbjct: 13 RGSHMYAPK-LQGPVAVYTWEGNQVNITCEVFAYPSATISWFRDGQLLPSSNYSNIKIYN 71
Query: 122 DRS---LQIENVGPQDEGLYICDVENLVGSISLRASLTV 157
S L++ D G Y C N +G SL L
Sbjct: 72 TPSASYLEVTPDSENDFGNYNCTAVNRIGQESLEFILVQ 110
Score = 45.6 bits (108), Expect = 2e-05
Identities = 12/74 (16%), Positives = 20/74 (27%), Gaps = 9/74 (12%)
Query: 136 GLYICDVENLVGSISLRASLTVHLLRDDFRAEPKDTRVASGETALLECGPPKGQPEPTLH 195
Y LV S + + P G + C P T+
Sbjct: 1 ATYAAASSALVPRGSHMYAPKLQG--------PVAVYTWEGNQVNITC-EVFAYPSATIS 51
Query: 196 WKKNGQFIDLESSK 209
W ++GQ + +
Sbjct: 52 WFRDGQLLPSSNYS 65
Score = 28.3 bits (63), Expect = 7.4
Identities = 6/32 (18%), Positives = 9/32 (28%), Gaps = 1/32 (3%)
Query: 587 TWEKYNMATVMNAATTTSYTVTHLRKFTKYEF 618
W A+ T+ L+ T Y
Sbjct: 158 VWHSKWY-DAKEASMEGIVTIVGLKPETTYAV 188
>2j8h_A Titin, connectin; cardiomyopathy, nuclear protein,
serine/threonine-protein KI LIMB-girdle muscular
dystrophy, phosphorylation; 1.99A {Homo sapiens} PDB:
2j8o_A 2ill_A
Length = 197
Score = 127 bits (320), Expect = 7e-34
Identities = 35/140 (25%), Positives = 52/140 (37%), Gaps = 11/140 (7%)
Query: 75 ISEPSDATVLSGSVVEFVCRVGGDPLPTILWRRDDGKMPT--GRAKIL----DDRSLQIE 128
E + V S VC+V G P P + W R ++ + +I L I
Sbjct: 8 KEELRNLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGGYHQLIIA 67
Query: 129 NVGPQDEGLYICDVENLVGSISLRASLTVH----LLRDDFRAEPKDTRVASGETALLECG 184
+V D +Y N GS+S ASL V + GE ++
Sbjct: 68 SVTDDDATVYQVRATNQGGSVSGTASLEVEVPAKIHLPKTLEGMGAVHALRGEVVSIKI- 126
Query: 185 PPKGQPEPTLHWKKNGQFID 204
P G+P+P + W+K ID
Sbjct: 127 PFSGKPDPVITWQKGQDLID 146
Score = 90.9 bits (226), Expect = 3e-21
Identities = 39/199 (19%), Positives = 63/199 (31%), Gaps = 36/199 (18%)
Query: 164 FRAEPKDTRVASGETALLECGPPKGQPEPTLHWKKNGQFIDLESSK----SLDLSRRTLG 219
F+ E ++ V A L C G P+P + W + G+ I + K L
Sbjct: 7 FKEELRNLNVRYQSNATLVC-KVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGGYHQLI 65
Query: 220 WLRVRP----LYW----------------NVARPRANLNPRYIGRKMASLLIWNHPRVNR 259
V +Y V P P+ + M ++ V
Sbjct: 66 IASVTDDDATVYQVRATNQGGSVSGTASLEVEVPAKIHLPKTL-EGMGAVHALRGEVV-S 123
Query: 260 LSCFAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLR----IQGVQKEDAGFFVC 315
+ G P P + W + + GH V + GV+++DAGF+V
Sbjct: 124 IKIPFSGKPDPVITWQKGQDLI--DNN---GHYQVIVTRSFTSLVFPNGVERKDAGFYVV 178
Query: 316 SALSVAGSTTVRAFLQVRE 334
A + G L V +
Sbjct: 179 CAKNRFGIDQKTVELDVAD 197
Score = 87.5 bits (217), Expect = 5e-20
Identities = 21/98 (21%), Positives = 33/98 (33%), Gaps = 5/98 (5%)
Query: 65 AKEALIKPFPISEPSDATVLSGSVVEFVCRVGGDPLPTILWRRDDGKM-PTGRAKILDDR 123
+ P + L G VV G P P I W++ + G +++ R
Sbjct: 98 VPAKIHLPKTLEGMGAVHALRGEVVSIKIPFSGKPDPVITWQKGQDLIDNNGHYQVIVTR 157
Query: 124 S----LQIENVGPQDEGLYICDVENLVGSISLRASLTV 157
S + V +D G Y+ +N G L V
Sbjct: 158 SFTSLVFPNGVERKDAGFYVVCAKNRFGIDQKTVELDV 195
Score = 81.7 bits (202), Expect = 5e-18
Identities = 30/174 (17%), Positives = 50/174 (28%), Gaps = 40/174 (22%)
Query: 259 RLSCFAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSAL 318
L C G P P V W ++G +++ L I V +DA + A
Sbjct: 23 TLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGGYHQLIIASVTDDDATVYQVRAT 82
Query: 319 SVAGSTTVRAFLQV---------------REFCVLPKGTFTL-----GQPN--------- 349
+ GS + A L+V L ++ G+P+
Sbjct: 83 NQGGSVSGTASLEVEVPAKIHLPKTLEGMGAVHALRGEVVSIKIPFSGKPDPVITWQKGQ 142
Query: 350 -----------LATGNSDLRRIACDLRETDSGLYTCTASSESGETSWSASLSVE 392
+ T + + D+G Y A + G + L V
Sbjct: 143 DLIDNNGHYQVIVTRSFTSLVFPNGVERKDAGFYVVCAKNRFGIDQKTVELDVA 196
>2v44_A NCAM2, neural cell adhesion molecule 2; phosphorylation,
immunoglobulin domain, IG, membrane, homphilic,
glycoprotein, transmembrane; 1.77A {Homo sapiens} PDB:
2xy2_A* 2vaj_A
Length = 189
Score = 124 bits (312), Expect = 6e-33
Identities = 28/142 (19%), Positives = 45/142 (31%), Gaps = 7/142 (4%)
Query: 72 PFPISEPSDATVLSGSVVEFVCRVGGDPLPTILWRRDDGKM-PTGRAKILDD---RSLQI 127
S + G F C G+P + K+ T R + + L I
Sbjct: 3 LQVTISLSKVELSVGESKFFTCTAIGEPESIDWYNPQGEKIISTQRVVVQKEGVRSRLTI 62
Query: 128 ENVGPQDEGLYICDVENLVGSI-SLRASLTVHLLRDDFRAEPKDTRVASGETALLECGPP 186
N +D G+Y C + G L ++ + FR GE A + C
Sbjct: 63 YNANIEDAGIYRCQATDAKGQTQEATVVLEIY-QKLTFREVVSPQEFKQGEDAEVVC-RV 120
Query: 187 KGQPEPTLHWKKNGQFIDLESS 208
P P + W + + + S
Sbjct: 121 SSSPAPAVSWLYHNEEVTTISD 142
Score = 93.3 bits (232), Expect = 4e-22
Identities = 24/92 (26%), Positives = 36/92 (39%), Gaps = 3/92 (3%)
Query: 71 KPFPISEPSDATVLSGSVVEFVCRVGGDPLPTILWRRDDGKMPT---GRAKILDDRSLQI 127
K S G E VCRV P P + W + ++ T R +L + +LQI
Sbjct: 96 KLTFREVVSPQEFKQGEDAEVVCRVSSSPAPAVSWLYHNEEVTTISDNRFAMLANNNLQI 155
Query: 128 ENVGPQDEGLYICDVENLVGSISLRASLTVHL 159
N+ DEG+Y C+ + V +
Sbjct: 156 LNINKSDEGIYRCEGRVEARGEIDFRDIIVIV 187
Score = 91.4 bits (227), Expect = 2e-21
Identities = 28/191 (14%), Positives = 49/191 (25%), Gaps = 32/191 (16%)
Query: 164 FRAEPKDTRVASGETALLECGPPKGQPEPTLHWKKNGQFIDLESSKSLDLSRRTLGWLRV 223
++ GE+ C G+PE + G+ I + + + L +
Sbjct: 5 VTISLSKVELSVGESKFFTC-TAIGEPESIDWYNPQGEKII-STQRVVVQKEGVRSRLTI 62
Query: 224 RPL-------YWNVARPRANLNPR-YIGRKMASLLIWNHPRVNR--------------LS 261
Y A + + L I+ +
Sbjct: 63 YNANIEDAGIYRCQAT-----DAKGQTQEATVVLEIYQKLTFREVVSPQEFKQGEDAEVV 117
Query: 262 CFAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVA 321
C SP P+V W +V + L+I + K D G + C A
Sbjct: 118 CRVSSSPAPAVSWLYHNEEVTTISD---NRFAMLANNNLQILNINKSDEGIYRCEGRVEA 174
Query: 322 GSTTVRAFLQV 332
+ V
Sbjct: 175 RGEIDFRDIIV 185
Score = 68.7 bits (168), Expect = 2e-13
Identities = 29/169 (17%), Positives = 52/169 (30%), Gaps = 38/169 (22%)
Query: 259 RLSCFAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSAL 318
+C A G P ++ +G +++ L I EDAG + C A
Sbjct: 21 FFTCTAIGEPESIDWYNPQGEKII--STQRVVVQKEGVRSRLTIYNANIEDAGIYRCQAT 78
Query: 319 SVAGST-TVRAFLQVRE---FCVLPKG-TFTLGQPNL----ATGN--------------- 354
G T L++ + F + F G+ + +
Sbjct: 79 DAKGQTQEATVVLEIYQKLTFREVVSPQEFKQGEDAEVVCRVSSSPAPAVSWLYHNEEVT 138
Query: 355 --SDLR---------RIACDLRETDSGLYTCTASSESGETSWSASLSVE 392
SD R +I ++ ++D G+Y C E+ + V
Sbjct: 139 TISDNRFAMLANNNLQIL-NINKSDEGIYRCEGRVEARGEIDFRDIIVI 186
Score = 39.8 bits (93), Expect = 0.001
Identities = 8/34 (23%), Positives = 16/34 (47%), Gaps = 1/34 (2%)
Query: 363 DLRETDSGLYTCTASSESGET-SWSASLSVEPRP 395
+ D+G+Y C A+ G+T + L + +
Sbjct: 64 NANIEDAGIYRCQATDAKGQTQEATVVLEIYQKL 97
>2iep_A Muscle-specific kinase receptor; beta-sandwich, signaling
protein,transferase; 2.21A {Rattus norvegicus}
Length = 192
Score = 123 bits (311), Expect = 1e-32
Identities = 36/143 (25%), Positives = 60/143 (41%), Gaps = 6/143 (4%)
Query: 65 AKEALIKPFPISEPSDATVLSGSVVEFVCRVGGDPLPTILWRRDDGKMPT--GRAKILDD 122
A++ P + L V F+C V P P I W R+ + R I ++
Sbjct: 1 AEKLPKAPVITTPLETVDALVEEVATFMCAVESYPQPEISWTRNKILIKLFDTRYSIREN 60
Query: 123 RS-LQIENVGPQDEGLYICDVENLVG-SISLRASLTVHLLRDDFRAEPKDTRVASGETAL 180
L I +V D+G+Y C N VG ++ +L V ++ P + ++ G A+
Sbjct: 61 GQLLTILSVEDSDDGIYCCTANNGVGGAVESCGALQVK-MKPKITRPPINVKIIEGLKAV 119
Query: 181 LECGPPKGQPEPTLHWKKNGQFI 203
L C G P+P++ W K +
Sbjct: 120 LPC-TTMGNPKPSVSWIKGDSAL 141
Score = 98.3 bits (245), Expect = 8e-24
Identities = 45/192 (23%), Positives = 71/192 (36%), Gaps = 30/192 (15%)
Query: 164 FRAEPKDTRVASGETALLECGPPKGQPEPTLHWKKNGQFIDLESSK-SLDLSRRTLGWLR 222
+ E A C + P+P + W +N I L ++ S+ + + L L
Sbjct: 10 ITTPLETVDALVEEVATFMC-AVESYPQPEISWTRNKILIKLFDTRYSIRENGQLLTILS 68
Query: 223 VRP----LYWNVARPRANLNPRYIGRKMASLLIWNHPRVNR--------------LSCFA 264
V +Y A +L + P++ R L C
Sbjct: 69 VEDSDDGIYCCTANNGV----GGAVESCGALQVKMKPKITRPPINVKIIEGLKAVLPCTT 124
Query: 265 EGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGS- 323
G+P PSV W + S + + V + G+LRI VQKEDAG + C A + G+
Sbjct: 125 MGNPKPSVSWIKGDSAL-----RENSRIAVLESGSLRIHNVQKEDAGQYRCVAKNSLGTA 179
Query: 324 TTVRAFLQVREF 335
+ L+V F
Sbjct: 180 YSKLVKLEVEVF 191
Score = 96.3 bits (240), Expect = 4e-23
Identities = 26/94 (27%), Positives = 43/94 (45%), Gaps = 2/94 (2%)
Query: 69 LIKPFPISEPSDATVLSGSVVEFVCRVGGDPLPTILWRRDDGKM-PTGRAKILDDRSLQI 127
+KP P + ++ G C G+P P++ W + D + R +L+ SL+I
Sbjct: 98 KMKPKITRPPINVKIIEGLKAVLPCTTMGNPKPSVSWIKGDSALRENSRIAVLESGSLRI 157
Query: 128 ENVGPQDEGLYICDVENLVGSI-SLRASLTVHLL 160
NV +D G Y C +N +G+ S L V +
Sbjct: 158 HNVQKEDAGQYRCVAKNSLGTAYSKLVKLEVEVF 191
Score = 72.1 bits (177), Expect = 1e-14
Identities = 34/170 (20%), Positives = 52/170 (30%), Gaps = 42/170 (24%)
Query: 259 RLSCFAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEG-TLRIQGVQKEDAGFFVCSA 317
C E P P + WT+ + +F + + G L I V+ D G + C+A
Sbjct: 26 TFMCAVESYPQPEISWTRNKILIKLFDT----RYSIRENGQLLTILSVEDSDDGIYCCTA 81
Query: 318 LSVAGSTTVR-AFLQVRE---FCVLPK-------GTFTL-----------------GQPN 349
+ G LQV+ P L
Sbjct: 82 NNGVGGAVESCGALQVKMKPKITRPPINVKIIEGLKAVLPCTTMGNPKPSVSWIKGDSAL 141
Query: 350 LATG------NSDLRRIACDLRETDSGLYTCTASSESGE-TSWSASLSVE 392
+ L RI ++++ D+G Y C A + G S L VE
Sbjct: 142 RENSRIAVLESGSL-RIH-NVQKEDAGQYRCVAKNSLGTAYSKLVKLEVE 189
Score = 35.9 bits (83), Expect = 0.018
Identities = 10/34 (29%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Query: 363 DLRETDSGLYTCTASSESGET-SWSASLSVEPRP 395
+ ++D G+Y CTA++ G +L V+ +P
Sbjct: 68 SVEDSDDGIYCCTANNGVGGAVESCGALQVKMKP 101
>3k0w_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1,
isoform 2; hydrolase, immunoglobulin domain, nucleus,
protease; 2.80A {Homo sapiens}
Length = 218
Score = 124 bits (313), Expect = 1e-32
Identities = 37/159 (23%), Positives = 55/159 (34%), Gaps = 21/159 (13%)
Query: 72 PFPISEPSDATVLSGSVVEFVCRVGGDPLPTILWRRDDGKMPTGRAKILDDRSLQIENVG 131
P VL+G V+ CR G P W + + ++P G L V
Sbjct: 19 SKITVNPESKAVLAGQFVKLCCRATGHPFVQYQWFKMNKEIPNGN-----TSELIFNAVH 73
Query: 132 PQDEGLYICDVENLVGS-ISLRASLTVHLLRDD--------------FRAEPKDTRVASG 176
+D G Y+C V N S + L V + + EP ++ G
Sbjct: 74 VKDAGFYVCRVNNNFTFEFSQWSQLDVCDIPESFQRSVDGVSESKLQICVEPTSQKLMPG 133
Query: 177 ETALLECGPPKGQPEPTLHWKKNGQFIDLESSKSLDLSR 215
T +L+C G P P W KN + E+ K +
Sbjct: 134 STLVLQC-VAVGSPIPHYQWFKNELPLTHETKKLYMVPY 171
Score = 89.6 bits (222), Expect = 2e-20
Identities = 33/211 (15%), Positives = 56/211 (26%), Gaps = 36/211 (17%)
Query: 146 VGSISLRASLTVHLLRD--DFRAEPKDTRVASGETALLECGPPKGQPEPTLHWKKNGQFI 203
+GS + L+ P+ V +G+ L C G P W K + I
Sbjct: 1 MGSSHHHHHHSSGLVPRGSKITVNPESKAVLAGQFVKLCC-RATGHPFVQYQWFKMNKEI 59
Query: 204 DLESSKSLDLSRRT--------------LGWLRVRPLYWNVARPRANLNPRYIGRKMASL 249
++ L + + + +V + G + L
Sbjct: 60 PNGNTSELIFNAVHVKDAGFYVCRVNNNFTFEFSQWSQLDVCDIPESFQRSVDGVSESKL 119
Query: 250 LIWNHPRVN--------RLSCFAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLR 301
I P L C A GSP+P W + L +
Sbjct: 120 QICVEPTSQKLMPGSTLVLQCVAVGSPIPHYQWFKNELP-----------LTHETKKLYM 168
Query: 302 IQGVQKEDAGFFVCSALSVAGSTTVRAFLQV 332
+ V E G + C + S + +
Sbjct: 169 VPYVDLEHQGTYWCHVYNDRDSQDSKKVEII 199
Score = 83.4 bits (206), Expect = 2e-18
Identities = 22/140 (15%), Positives = 47/140 (33%), Gaps = 12/140 (8%)
Query: 39 SRRSRSIFGSVLGARGALSDDQWKLIAKEALIKPFPISEPSDATVLSGSVVEFVCRVGGD 98
S+ V + + + + + K EP+ ++ GS + C G
Sbjct: 90 FEFSQWSQLDVC----DIPESFQRSVDGVSESKLQICVEPTSQKLMPGSTLVLQCVAVGS 145
Query: 99 PLPTILWRRDDGKMPTGRAKILDDRSLQIENVGPQDEGLYICDVENLVGSI-SLRASLTV 157
P+P W +++ + + + V + +G Y C V N S S + + +
Sbjct: 146 PIPHYQWFKNELPLTHE-----TKKLYMVPYVDLEHQGTYWCHVYNDRDSQDSKKVEIII 200
Query: 158 HLLRDDFRAEPKDTRVASGE 177
L P + + +
Sbjct: 201 DELN--NLGHPDNKEQTTDQ 218
Score = 69.9 bits (171), Expect = 1e-13
Identities = 26/181 (14%), Positives = 42/181 (23%), Gaps = 57/181 (31%)
Query: 259 RLSCFAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSAL 318
+L C A G P W + + L V +DAGF+VC
Sbjct: 37 KLCCRATGHPFVQYQWFKMN-----------KEIPNGNTSELIFNAVHVKDAGFYVCRVN 85
Query: 319 SVAGS-TTVRAFLQVRE------------------FCVLPK-------GTFTL------- 345
+ + + L V + CV P T L
Sbjct: 86 NNFTFEFSQWSQLDVCDIPESFQRSVDGVSESKLQICVEPTSQKLMPGSTLVLQCVAVGS 145
Query: 346 ----------GQPNLATGNSDLRRIACDLRETDSGLYTCTASSESGE-TSWSASLSVEPR 394
P + + G Y C ++ S + ++
Sbjct: 146 PIPHYQWFKNELPLTHETKKLYM-VP-YVDLEHQGTYWCHVYNDRDSQDSKKVEIIIDEL 203
Query: 395 P 395
Sbjct: 204 N 204
Score = 44.5 bits (105), Expect = 4e-05
Identities = 22/156 (14%), Positives = 37/156 (23%), Gaps = 30/156 (19%)
Query: 346 GQPNLATGNSDLRRIACDLRETDSGLYTCTASSESGE-TSWSASLSVEPRPGPHAVHRMP 404
+ + GN+ + D+G Y C ++ S + L V P
Sbjct: 56 NKE-IPNGNTSELIFN-AVHVKDAGFYVCRVNNNFTFEFSQWSQLDVCDIPESFQRSVDG 113
Query: 405 DSGLFPGPPAAPVILNTTRG-SVTLG---WGEPEPRGGGVAPVIGYTVEYFSSDLQTGWV 460
S P G ++ L G P P Y W
Sbjct: 114 VSESKLQICVEPTSQKLMPGSTLVLQCVAVGSPIPH---------YQ-----------WF 153
Query: 461 VAAHRITSTS---ITVSDLKPDTSYMFIVRAENSHG 493
+T + V + + + N
Sbjct: 154 KNELPLTHETKKLYMVPYVDLEHQGTYWCHVYNDRD 189
>3lcy_A Titin; A-BAND, IG tandem domains, ATP-binding, calmodulin-BI
cardiomyopathy, disease mutation, disulfide bond,
immunoglo domain, isopeptide bond; 2.50A {Homo sapiens}
Length = 197
Score = 123 bits (311), Expect = 1e-32
Identities = 32/136 (23%), Positives = 52/136 (38%), Gaps = 7/136 (5%)
Query: 75 ISEPSDATVLSGSVVEFVCRVGGDPLPTILWRRDDGK-MPTGRAKILDD---RSLQIENV 130
E D T G + C++ G PLP I W R + + + + K+ D +L +
Sbjct: 11 RKEMKDVTTKLGEAAQLSCQIVGRPLPDIKWYRFGKELIQSRKYKMSSDGRTHTLTVMTE 70
Query: 131 GPQDEGLYICDVENLVGSISLRASLTVHLLRDDFRA--EPKDTRVASGETALLECGPPKG 188
+DEG+Y C N VG + + L + + A G T L G
Sbjct: 71 EQEDEGVYTCIATNEVGEVETSSKLLLQATPQFHPGYPLKEKYYGAVGSTLRLHV-MYIG 129
Query: 189 QPEPTLHWKKNGQFID 204
+P P + W + +
Sbjct: 130 RPVPAMTWFHGQKLLQ 145
Score = 80.9 bits (200), Expect = 1e-17
Identities = 38/200 (19%), Positives = 69/200 (34%), Gaps = 42/200 (21%)
Query: 164 FRAEPKDTRVASGETALLECGPPKGQPEPTLHWKKNGQFIDLESSKSLDLSRR-TLGWLR 222
R E KD GE A L C G+P P + W + G+ +L S+ +S L
Sbjct: 10 IRKEMKDVTTKLGEAAQLSC-QIVGRPLPDIKWYRFGK--ELIQSRKYKMSSDGRTHTLT 66
Query: 223 VRPL-------YWNVARPRANLNPRYIGRKMASLLIWNHPRVN----------------- 258
V Y +A N + LL+ P+ +
Sbjct: 67 VMTEEQEDEGVYTCIAT-----NEVGEVETSSKLLLQATPQFHPGYPLKEKYYGAVGSTL 121
Query: 259 RLSCFAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEG---TLRIQGVQKE-DAGFFV 314
RL G P+P++ W + ++ + L ++ VQ++ AG +
Sbjct: 122 RLHVMYIGRPVPAMTWFHGQKLL-----QNSENITIENTEHYTHLVMKNVQRKTHAGKYK 176
Query: 315 CSALSVAGSTTVRAFLQVRE 334
+V G+ +++++
Sbjct: 177 VQLSNVFGTVDAILDVEIQD 196
Score = 79.7 bits (197), Expect = 2e-17
Identities = 30/174 (17%), Positives = 55/174 (31%), Gaps = 40/174 (22%)
Query: 259 RLSCFAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSAL 318
+LSC G PLP + W + G ++ Y + TL + ++ED G + C A
Sbjct: 26 QLSCQIVGRPLPDIKWYRFGKEL--IQSRKYKMSSDGRTHTLTVMTEEQEDEGVYTCIAT 83
Query: 319 SVAGSTTVRAFLQVRE-------------FCVLPKGTFTL-----GQPN----------- 349
+ G + L ++ + T L G+P
Sbjct: 84 NEVGEVETSSKLLLQATPQFHPGYPLKEKYYGAVGSTLRLHVMYIGRPVPAMTWFHGQKL 143
Query: 350 ---------LATGNSDLRRIACDLRETDSGLYTCTASSESGETSWSASLSVEPR 394
T + + R+T +G Y S+ G + ++ +
Sbjct: 144 LQNSENITIENTEHYTHLVMKNVQRKTHAGKYKVQLSNVFGTVDAILDVEIQDK 197
Score = 77.4 bits (191), Expect = 1e-16
Identities = 16/100 (16%), Positives = 33/100 (33%), Gaps = 7/100 (7%)
Query: 64 IAKEALIKPFPISEPSDATVLSGSVVEFVCRVGGDPLPTILWRRDDGKM-PTGRAKILDD 122
A +P+ GS + G P+P + W + + I +
Sbjct: 98 QATPQFHPGYPL--KEKYYGAVGSTLRLHVMYIGRPVPAMTWFHGQKLLQNSENITIENT 155
Query: 123 ---RSLQIENVGPQ-DEGLYICDVENLVGSISLRASLTVH 158
L ++NV + G Y + N+ G++ + +
Sbjct: 156 EHYTHLVMKNVQRKTHAGKYKVQLSNVFGTVDAILDVEIQ 195
Score = 43.9 bits (104), Expect = 4e-05
Identities = 13/44 (29%), Positives = 23/44 (52%)
Query: 363 DLRETDSGLYTCTASSESGETSWSASLSVEPRPGPHAVHRMPDS 406
+ D G+YTC A++E GE S+ L ++ P H + + +
Sbjct: 69 TEEQEDEGVYTCIATNEVGEVETSSKLLLQATPQFHPGYPLKEK 112
>1nn8_R CD155 antigen, poliovirus receptor; icosahedral virus,
picornavirus, virus/receptor complex; 15.00A {Homo
sapiens} SCOP: i.6.1.1 PDB: 1dgi_R
Length = 302
Score = 126 bits (318), Expect = 1e-32
Identities = 53/308 (17%), Positives = 88/308 (28%), Gaps = 59/308 (19%)
Query: 75 ISEPSDATVLSGSVVEFVCRVGGDPLPT-----ILWRRDDGKMPT--------------G 115
+ P+ G V C + + + W R
Sbjct: 4 VQAPTQVPGFLGDSVTLPCYLQVPNMEVTHVSQLTWARHGESGSMAVFHQTQGPSYSESK 63
Query: 116 RAKILDDR--------SLQIENVGPQDEGLYICDVENLV-GSISLRASLTVHLLRDDFRA 166
R + + R SL++ + +DEG Y C GS S+ L V L + A
Sbjct: 64 RLEFVAARLGAELRNASLRMFGLRVEDEGNYTCLFVTFPQGSRSVDIWLRV-LAKPQNTA 122
Query: 167 EPKDTRVASGETALLECGPPKGQPEPTLHWKKNGQFIDLESSKSLDLSRR--TLGWLRVR 224
E + ++ + C G+P + W + + S LS +
Sbjct: 123 EVQKVQLTGEPVPMARCVSTGGRPPAQITWHSDLGGMPNTSQVPGFLSGTVTVTSLWILV 182
Query: 225 PLYW-----------NVARPR-----ANLNPRYIGRKMASLLIWNHPRVN---RLSCFAE 265
P + + + NL Y S N L+C A
Sbjct: 183 PSSQVDGKNVTCKVEHESFEKPQLLTVNLTVYYPPEVSISGYDNNWYLGQNEATLTCDAR 242
Query: 266 GSPLP-SVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGST 324
+P P W+ + F V Q L I+ V K +C+ + G+
Sbjct: 243 SNPEPTGYNWSTTMGPLPPF--------AVAQGAQLLIRPVDKPINTTLICNVTNALGAR 294
Query: 325 TVRAFLQV 332
+QV
Sbjct: 295 QAELTVQV 302
Score = 80.1 bits (197), Expect = 1e-16
Identities = 31/144 (21%), Positives = 42/144 (29%), Gaps = 12/144 (8%)
Query: 69 LIKPFPISEPSDATVLSGSVVEFVCRV-GGDPLPTILWRRDDGKMPTGRAKILDDR---- 123
L KP +E + V C GG P I W D G MP
Sbjct: 115 LAKPQNTAEVQKVQLTGEPVPMARCVSTGGRPPAQITWHSDLGGMPNTSQVPGFLSGTVT 174
Query: 124 ---SLQIENVGPQDEGLYICDVEN--LVGSISLRASLTVHLLRDDFRAEPKDTRVASGET 178
+ D C VE+ L +LTV+ + + +
Sbjct: 175 VTSLWILVPSSQVDGKNVTCKVEHESFEKPQLLTVNLTVYYPPEVSISGYDNNWYLGQNE 234
Query: 179 ALLECGPPKGQPEPT-LHWKKNGQ 201
A L C + PEPT +W
Sbjct: 235 ATLTC-DARSNPEPTGYNWSTTMG 257
Score = 78.6 bits (193), Expect = 4e-16
Identities = 19/88 (21%), Positives = 29/88 (32%), Gaps = 3/88 (3%)
Query: 71 KPFPISEPSDATVLSGSVVEFVCRVGGDPLPT-ILWRRDDGKMPTGRAKILDDRSLQIEN 129
IS + L + C +P PT W G +P + L I
Sbjct: 217 PEVSISGYDNNWYLGQNEATLTCDARSNPEPTGYNWSTTMGPLP--PFAVAQGAQLLIRP 274
Query: 130 VGPQDEGLYICDVENLVGSISLRASLTV 157
V IC+V N +G+ ++ V
Sbjct: 275 VDKPINTTLICNVTNALGARQAELTVQV 302
Score = 60.9 bits (147), Expect = 3e-10
Identities = 32/298 (10%), Positives = 63/298 (21%), Gaps = 74/298 (24%)
Query: 167 EPKDTRVASGETALLEC----GPPKGQPEPTLHWKKNGQFIDLE---SSKSLDLSRRTLG 219
P G++ L C + L W ++G+ + ++ S
Sbjct: 6 APTQVPGFLGDSVTLPCYLQVPNMEVTHVSQLTWARHGESGSMAVFHQTQGPSYSESKRL 65
Query: 220 WLRVRPLY----------WNVARP-------RANLNPRYIGRKMASLLIWNHPRVN---- 258
L + + P+ L + P+
Sbjct: 66 EFVAARLGAELRNASLRMFGLRVEDEGNYTCLFVTFPQGSRSVDIWLRVLAKPQNTAEVQ 125
Query: 259 ----------RLSCFAE-GSPLPSVFWTQEGSQVLMFPGNAYGHLH--VTQEGTLRIQGV 305
C + G P + W + + G L VT +
Sbjct: 126 KVQLTGEPVPMARCVSTGGRPPAQITWHSDL-GGMPNTSQVPGFLSGTVTVTSLWILVPS 184
Query: 306 QKEDAGFFVCSALSVAGSTTVRAFLQV------REFCVLPKGTFTLGQPNL-----ATGN 354
+ D C + + + + LGQ A N
Sbjct: 185 SQVDGKNVTCKVEHESFEKPQLLTVNLTVYYPPEVSISGYDNNWYLGQNEATLTCDARSN 244
Query: 355 ------------SDLRRIAC---------DLRETDSGLYTCTASSESGETSWSASLSV 391
L A + + + C ++ G ++ V
Sbjct: 245 PEPTGYNWSTTMGPLPPFAVAQGAQLLIRPVDKPINTTLICNVTNALGARQAELTVQV 302
Score = 49.7 bits (118), Expect = 1e-06
Identities = 30/220 (13%), Positives = 60/220 (27%), Gaps = 67/220 (30%)
Query: 259 RLSCFAEGSPLP-----SVFWTQEGSQVLMFPGNAYGHLHV----------------TQE 297
L C+ + + + W + G M + +
Sbjct: 19 TLPCYLQVPNMEVTHVSQLTWARHGESGSMAVFHQTQGPSYSESKRLEFVAARLGAELRN 78
Query: 298 GTLRIQGVQKEDAGFFVCSALS-VAGSTTVRAFLQVREFCVLPKGTFTLGQPNLATGNS- 355
+LR+ G++ ED G + C ++ GS +V +L+V P+ T + + L
Sbjct: 79 ASLRMFGLRVEDEGNYTCLFVTFPQGSRSVDIWLRVL---AKPQNTAEVQKVQLTGEPVP 135
Query: 356 -------------------DLRRIAC---------------------DLRETDSGLYTCT 375
DL + + D TC
Sbjct: 136 MARCVSTGGRPPAQITWHSDLGGMPNTSQVPGFLSGTVTVTSLWILVPSSQVDGKNVTCK 195
Query: 376 ASSESGETSWSASLSVE-PRPGPHAVHRMPDSGLFPGPPA 414
ES E ++++ P ++ ++ A
Sbjct: 196 VEHESFEKPQLLTVNLTVYYPPEVSISGYDNNWYLGQNEA 235
Score = 33.5 bits (76), Expect = 0.17
Identities = 36/228 (15%), Positives = 56/228 (24%), Gaps = 37/228 (16%)
Query: 339 PKGTFTLGQPNLATGNSDLRRIACDLRETDSGLYTCTASS-ESGETSWSASLSVEPRPGP 397
+ F + N+ LR + LR D G YTC + G S L V + P
Sbjct: 63 KRLEFVAARLGAELRNASLR-MF-GLRVEDEGNYTCLFVTFPQGSRSVDIWLRVLAK--P 118
Query: 398 HAVHRMPDSGLFPGPPAAPVILNTTRGSVTLGWGEPEP-----RGGGVAPVIGYTVEYFS 452
+ L P + + G G P G P + S
Sbjct: 119 QNTAEVQKVQLTGEPVP--MARCVSTG------GRPPAQITWHSDLGGMPNTSQVPGFLS 170
Query: 453 SDLQTGWVVAAHRITSTSITVSDLKPDTSYMFIVRAENSHGLGIPSPVSPITRTLGLNSL 512
+ ++ + + E+ S P T+ L
Sbjct: 171 GTVT----------VTSLWILVPSSQVDGKNVTCKVEH------ESFEKPQLLTVNLTVY 214
Query: 513 VPQHLLDEARARLGTKVVNLRELIPTAS---TAVRITWEVSWGSVPQH 557
P + N L A W + G +P
Sbjct: 215 YPPEVSISGYDNNWYLGQNEATLTCDARSNPEPTGYNWSTTMGPLPPF 262
>1nbq_A JAM, junctional adhesion molecule 1, PAM-1; reovirus receptor,
tight junction formation, immunoglobulin superfamily,
immune system; 2.90A {Homo sapiens} SCOP: b.1.1.1
b.1.1.4 PDB: 3eoy_G
Length = 209
Score = 123 bits (310), Expect = 2e-32
Identities = 27/163 (16%), Positives = 48/163 (29%), Gaps = 13/163 (7%)
Query: 68 ALIKPFPISEPSDATVLSGSVVEFVCRVGGDPLPTILWRRDDGKMPTGRAK--------- 118
A+ S + + + V+ C G P + W+ D G
Sbjct: 1 AMGSVTVHSSEPEVRIPENNPVKLSCAYSGFSSPRVEWKFDQGDTTRLVCYNNKITASYE 60
Query: 119 ---ILDDRSLQIENVGPQDEGLYICDVENLVGSISLRASLTVH-LLRDDFRAEPKDTRVA 174
+ ++V +D G Y C V G+ + + L+ +
Sbjct: 61 DRVTFLPTGITFKSVTREDTGTYTCMVSEEGGNSYGEVKVKLIVLVPPSKPTVNIPSSAT 120
Query: 175 SGETALLECGPPKGQPEPTLHWKKNGQFIDLESSKSLDLSRRT 217
G A+L C G P W K+G + + S +
Sbjct: 121 IGNRAVLTCSEQDGSPPSEYTWFKDGIVMPTNPKSTRAFSNSS 163
Score = 83.1 bits (205), Expect = 2e-18
Identities = 31/215 (14%), Positives = 59/215 (27%), Gaps = 45/215 (20%)
Query: 152 RASLTVHLLRDDFRAEPKDTRVASGETALLECGPPKGQPEPTLHWKKNGQFIDLESSKSL 211
S+TVH + + R+ L C G P + WK + +
Sbjct: 2 MGSVTVH-------SSEPEVRIPENNPVKLSC-AYSGFSSPRVEWKFDQGDTTRLVCYNN 53
Query: 212 DLSRRTLGWLRVRP--------------LYWNVARPRANLNPRYIGRKMASLLIWNHPRV 257
++ + P Y + G L++ P
Sbjct: 54 KITASYEDRVTFLPTGITFKSVTREDTGTYTCMVS---EEGGNSYGEVKVKLIVLVPPSK 110
Query: 258 N--------------RLSCFA-EGSPLPSVFWTQEGSQVLMFP-----GNAYGHLHVTQE 297
L+C +GSP W ++G + P + ++
Sbjct: 111 PTVNIPSSATIGNRAVLTCSEQDGSPPSEYTWFKDGIVMPTNPKSTRAFSNSSYVLNPTT 170
Query: 298 GTLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQV 332
G L + D G + C A + G+ +++
Sbjct: 171 GELVFDPLSASDTGEYSCEARNGYGTPMTSNAVRM 205
Score = 79.6 bits (196), Expect = 3e-17
Identities = 18/104 (17%), Positives = 31/104 (29%), Gaps = 12/104 (11%)
Query: 67 EALIKPFPISEPSDATVLSGSVVEFVCRV-GGDPLPTILWRRDDGKMPTG---------- 115
L+ P + ++ G+ C G P W +D MPT
Sbjct: 103 IVLVPPSKPTVNIPSSATIGNRAVLTCSEQDGSPPSEYTWFKDGIVMPTNPKSTRAFSNS 162
Query: 116 -RAKILDDRSLQIENVGPQDEGLYICDVENLVGSISLRASLTVH 158
L + + D G Y C+ N G+ ++ +
Sbjct: 163 SYVLNPTTGELVFDPLSASDTGEYSCEARNGYGTPMTSNAVRME 206
Score = 71.5 bits (175), Expect = 2e-14
Identities = 28/186 (15%), Positives = 49/186 (26%), Gaps = 54/186 (29%)
Query: 259 RLSCFAEGSPLPSVFWTQEGSQVLMFPGN------AYGHLHVTQEGTLRIQGVQKEDAGF 312
+LSC G P V W + +Y + + V +ED G
Sbjct: 23 KLSCAYSGFSSPRVEWKFDQGDTTRLVCYNNKITASYEDRVTFLPTGITFKSVTREDTGT 82
Query: 313 FVCSALSVAGSTTVRAFLQVREF-----------------------CVLPKG-------- 341
+ C G++ +++ C G
Sbjct: 83 YTCMVSEEGGNSYGEVKVKLIVLVPPSKPTVNIPSSATIGNRAVLTCSEQDGSPPSEYTW 142
Query: 342 ---------------TFTLGQPNLATGNSDLRRIACDLRETDSGLYTCTASSESGETSWS 386
F+ L +L L +D+G Y+C A + G S
Sbjct: 143 FKDGIVMPTNPKSTRAFSNSSYVLNPTTGEL-VFD-PLSASDTGEYSCEARNGYGTPMTS 200
Query: 387 ASLSVE 392
++ +E
Sbjct: 201 NAVRME 206
>2a38_A Titin; Z1Z2, structural protein; 2.00A {Homo sapiens} PDB: 1ya5_A
2f8v_A
Length = 194
Score = 122 bits (307), Expect = 4e-32
Identities = 33/137 (24%), Positives = 47/137 (34%), Gaps = 9/137 (6%)
Query: 75 ISEPSDATVLSGSVVEFVCRVGGDPLPTILWRRDD-----GKMPTGRAKILDDR-SLQIE 128
VL GS F + G P+P + W RD +P + D R L I
Sbjct: 9 TQPLQSVVVLEGSTATFEAHISGFPVPEVSWFRDGQVISTSTLPGVQISFSDGRAKLTIP 68
Query: 129 NVGPQDEGLYICDVENLVGSISLRASLTVHLLRD--DFRAEPKDTRVASGETALLECGPP 186
V + G Y N G + A L V +F + V G L+
Sbjct: 69 AVTKANSGRYSLKATNGSGQATSTAELLVKAETAPPNFVQRLQSMTVRQGSQVRLQVR-V 127
Query: 187 KGQPEPTLHWKKNGQFI 203
G P P + + ++G I
Sbjct: 128 TGIPTPVVKFYRDGAEI 144
Score = 95.2 bits (237), Expect = 9e-23
Identities = 45/194 (23%), Positives = 73/194 (37%), Gaps = 31/194 (15%)
Query: 164 FRAEPKDTRVASGETALLECGPPKGQPEPTLHWKKNGQFIDLESSKSLDLS----RRTLG 219
F + V G TA E G P P + W ++GQ I + + +S R L
Sbjct: 8 FTQPLQSVVVLEGSTATFEA-HISGFPVPEVSWFRDGQVISTSTLPGVQISFSDGRAKLT 66
Query: 220 WLRVRP----LYWNVAR-------PRANLN------PRYIGRKMASLLIWNHPRVNRLSC 262
V Y A A L P +++ S+ + +V RL
Sbjct: 67 IPAVTKANSGRYSLKATNGSGQATSTAELLVKAETAPPNFVQRLQSMTVRQGSQV-RLQV 125
Query: 263 FAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEG---TLRIQGVQKEDAGFFVCSALS 319
G P P V + ++G+++ + ++QEG +L I ED+G + +A +
Sbjct: 126 RVTGIPTPVVKFYRDGAEI-----QSSLDFQISQEGDLYSLLIAEAYPEDSGTYSVNATN 180
Query: 320 VAGSTTVRAFLQVR 333
G T A L V+
Sbjct: 181 SVGRATSTAELLVQ 194
Score = 94.0 bits (234), Expect = 2e-22
Identities = 29/101 (28%), Positives = 42/101 (41%), Gaps = 4/101 (3%)
Query: 62 KLIAKEALIKPFPISEPSDATVLSGSVVEFVCRVGGDPLPTILWRRDDGKM-PTGRAKIL 120
+L+ K P + TV GS V RV G P P + + RD ++ + +I
Sbjct: 94 ELLVKAETAPPNFVQRLQSMTVRQGSQVRLQVRVTGIPTPVVKFYRDGAEIQSSLDFQIS 153
Query: 121 DD---RSLQIENVGPQDEGLYICDVENLVGSISLRASLTVH 158
+ SL I P+D G Y + N VG + A L V
Sbjct: 154 QEGDLYSLLIAEAYPEDSGTYSVNATNSVGRATSTAELLVQ 194
Score = 90.6 bits (225), Expect = 4e-21
Identities = 33/172 (19%), Positives = 51/172 (29%), Gaps = 39/172 (22%)
Query: 259 RLSCFAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSAL 318
G P+P V W ++G + L I V K ++G + A
Sbjct: 24 TFEAHISGFPVPEVSWFRDGQVISTSTLPGVQISFSDGRAKLTIPAVTKANSGRYSLKAT 83
Query: 319 SVAGSTTVRAFLQVREFCVLPK-------------GTFTL-----GQPN----------- 349
+ +G T A L V+ P L G P
Sbjct: 84 NGSGQATSTAELLVKAETAPPNFVQRLQSMTVRQGSQVRLQVRVTGIPTPVVKFYRDGAE 143
Query: 350 ---------LATGNSDLRRIACDLRETDSGLYTCTASSESGETSWSASLSVE 392
G+ IA + DSG Y+ A++ G + +A L V+
Sbjct: 144 IQSSLDFQISQEGDLYSLLIA-EAYPEDSGTYSVNATNSVGRATSTAELLVQ 194
Score = 44.3 bits (105), Expect = 3e-05
Identities = 10/35 (28%), Positives = 20/35 (57%)
Query: 363 DLRETDSGLYTCTASSESGETSWSASLSVEPRPGP 397
+ + +SG Y+ A++ SG+ + +A L V+ P
Sbjct: 69 AVTKANSGRYSLKATNGSGQATSTAELLVKAETAP 103
>2v5t_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; phosphorylation,
immunoglobulin domain, membrane, glycoprote adhesion,
transmembrane; HET: NAG; 2.00A {Homo sapiens}
Length = 189
Score = 121 bits (306), Expect = 4e-32
Identities = 39/153 (25%), Positives = 58/153 (37%), Gaps = 7/153 (4%)
Query: 72 PFPISEPSDATVLSGSVVEFVCRVGGDPLPTILWRRDDGKMPT---GRAKILDDRSLQIE 128
S G E VCRV P P + W + ++ T R +L + +LQI
Sbjct: 3 LTFREVVSPQEFKQGEDAEVVCRVSSSPAPAVSWLYHNEEVTTISDNRFAMLANNNLQIL 62
Query: 129 NVGPQDEGLYICDVENLV-GSISLRASLTVHLLRDDFRA--EPKDTRVASGETALLECGP 185
N+ DEG+Y C+ G I R + + + + + GE C
Sbjct: 63 NINKSDEGIYRCEGRVEARGEIDFRDIIVIVNVPPAISMPQKSFNATAERGEEMTFSC-R 121
Query: 186 PKGQPEPTLHWKKNGQFIDLESSKSLDLSRRTL 218
G PEP + W +NG+ I+ L S L
Sbjct: 122 ASGSPEPAISWFRNGKLIEENEKYILKGSNTEL 154
Score = 95.6 bits (238), Expect = 7e-23
Identities = 40/190 (21%), Positives = 67/190 (35%), Gaps = 29/190 (15%)
Query: 164 FRAEPKDTRVASGETALLECGPPKGQPEPTLHWKKNGQFIDLESS-KSLDLSRRTLGWLR 222
FR GE A + C P P + W + + + S + L+ L L
Sbjct: 5 FREVVSPQEFKQGEDAEVVC-RVSSSPAPAVSWLYHNEEVTTISDNRFAMLANNNLQILN 63
Query: 223 VRP----LYWNVARPRANLNPRYIGRKMASLLIWNHPRVN----------------RLSC 262
+ +Y R I + +++ P ++ SC
Sbjct: 64 INKSDEGIYRCEGR---VEARGEIDFRDIIVIVNVPPAISMPQKSFNATAERGEEMTFSC 120
Query: 263 FAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAG 322
A GSP P++ W + G + N ++ L ++ + D G +VC A + AG
Sbjct: 121 RASGSPEPAISWFRNGKLI---EENEK-YILKGSNTELTVRNIINSDGGPYVCRATNKAG 176
Query: 323 STTVRAFLQV 332
+AFLQV
Sbjct: 177 EDEKQAFLQV 186
Score = 91.4 bits (227), Expect = 2e-21
Identities = 30/111 (27%), Positives = 43/111 (38%), Gaps = 7/111 (6%)
Query: 52 ARGALSDDQWKLIAKEALIKPFPIS--EPSDATVLSGSVVEFVCRVGGDPLPTILWRRDD 109
ARG + +I + P + +AT G + F CR G P P I W R+
Sbjct: 80 ARGEIDFRDIIVIV---NVPPAISMPQKSFNATAERGEEMTFSCRASGSPEPAISWFRNG 136
Query: 110 GKMPTGRAKIL--DDRSLQIENVGPQDEGLYICDVENLVGSISLRASLTVH 158
+ IL + L + N+ D G Y+C N G +A L V
Sbjct: 137 KLIEENEKYILKGSNTELTVRNIINSDGGPYVCRATNKAGEDEKQAFLQVF 187
Score = 87.5 bits (217), Expect = 4e-20
Identities = 33/171 (19%), Positives = 52/171 (30%), Gaps = 43/171 (25%)
Query: 259 RLSCFAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSAL 318
+ C SP P+V W +V N + L+I + K D G + C
Sbjct: 21 EVVCRVSSSPAPAVSWLYHNEEVTTISDN---RFAMLANNNLQILNINKSDEGIYRCEGR 77
Query: 319 SVAGSTTVRAFLQVR-----EFCVLPK---------GTFTL-----GQP----------- 348
A + V + K T G P
Sbjct: 78 VEARGEIDFRDIIVIVNVPPAISMPQKSFNATAERGEEMTFSCRASGSPEPAISWFRNGK 137
Query: 349 --------NLATGNSDLRRIACDLRETDSGLYTCTASSESGETSWSASLSV 391
L N++L + ++ +D G Y C A++++GE A L V
Sbjct: 138 LIEENEKYILKGSNTEL-TVR-NIINSDGGPYVCRATNKAGEDEKQAFLQV 186
Score = 36.3 bits (84), Expect = 0.012
Identities = 24/140 (17%), Positives = 44/140 (31%), Gaps = 35/140 (25%)
Query: 363 DLRETDSGLYTCTASSESGETSWSASLSVEPRPGPHAVHRMPDSGLFPGPPAAPVILNTT 422
++ ++D G+Y C E+ + V V+ P + A
Sbjct: 63 NINKSDEGIYRCEGRVEARGEIDFRDIIVI-------VNVPPAISMPQKSFNATAERG-- 113
Query: 423 RGSVTLG---WGEPEPR------GGGVAPVIGYTVEYFSSDLQTGWVVAAHRITSTSITV 473
+T G PEP G + Y ++ +++L + +I
Sbjct: 114 -EEMTFSCRASGSPEPAISWFRNGKLIEENEKYILKGSNTEL---------TV--RNIIN 161
Query: 474 SDLKPDTSYMFIVRAENSHG 493
SD ++ RA N G
Sbjct: 162 SD-----GGPYVCRATNKAG 176
>2v5y_A Receptor-type tyrosine-protein phosphatase MU; membrane, hydrolase,
glycoprotein, receptor protei tyrosine phosphatase, cell
adhesion; HET: NAG; 3.10A {Homo sapiens}
Length = 731
Score = 129 bits (326), Expect = 1e-31
Identities = 55/397 (13%), Positives = 102/397 (25%), Gaps = 81/397 (20%)
Query: 259 RLSCFAEGSPLPSVFWTQEGSQV-LMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSA 317
+ PL + W G + + + G+
Sbjct: 95 NVYVKVNNGPLGNPIWNISGDPTRTWNRAELAISTFWPNFYQVIFEVITSGHQGYLAIDE 154
Query: 318 LSVA-------------GSTTVRAFLQVREFCV-----LPKGTFTLGQPNLATGNSDLRR 359
+ V + V A C + L ++ +
Sbjct: 155 VKVLGHPCTRTPHFLRIQNVEVNAGQFATFQCSAIGRTVAGDRLWLQGIDVRDAPLKEIK 214
Query: 360 IAC-----------DLRETDSGLYTCTASSESGETSWSASLSVEPRPGPHAVHRMPDSGL 408
+ + + D+G Y C +E G + + V P
Sbjct: 215 VTSSRRFIASFNVVNTTKRDAGKYRCMIRTEGGVGISNYAELVVKEP------------- 261
Query: 409 FPGPPAAPVILNTTRGSVTLGWGEPEPRGGGVAPVIGYTVEYFSSDLQTGWVVAAHRITS 468
P P A P + + + + G G P++ VEY ++ W + S
Sbjct: 262 -PVPIAPPQLASVGATYLWIQLNANSINGDG--PIVAREVEYCTAS--GSWN-DRQPVDS 315
Query: 469 TSITVSDLKPDTSYMFIVRAENSHGLGI--PSPVSPITRTLGLNSLVPQHLLDEARARLG 526
TS + L PDT Y V G P P P+ L
Sbjct: 316 TSYKIGHLDPDTEYEISVLLTRPGEGGTGSPGPALRTRTKCADPMRGPRKL--------- 366
Query: 527 TKVVNLRELIPTASTAVRITWEVSWGSVPQHLLDEARARLGTKVVNLRELIPTASTAVRI 586
E++ S + I WE + + + V ++ +
Sbjct: 367 -------EVVEVKSRQITIRWE-----PFGYNVTRCHS-YNLTVHYCYQVGGQEQVREEV 413
Query: 587 TWEKYNMATVMNAATTTSYTVTHLRKFTKYEFFLVPF 623
+W+ + +T+T+L +T L+
Sbjct: 414 SWDT--------ENSHPQHTITNLSPYTNVSVKLILM 442
Score = 91.8 bits (227), Expect = 2e-19
Identities = 63/485 (12%), Positives = 105/485 (21%), Gaps = 93/485 (19%)
Query: 185 PPKGQPEPTLHWKKNGQFIDLESSKSLDLSRRTLGWLRVR----------PLYWNVARPR 234
P W +G + L +S + +V L + +
Sbjct: 99 KVNNGPLGNPIWNISGDPTRTWNRAELAISTFWPNFYQVIFEVITSGHQGYLAIDEVKVL 158
Query: 235 ANLNPRYIGRKMASLLIWNHPRVNRLSCFAEGSPLPSVFWTQEGSQVLMFPGNAYGHL-H 293
+ R + N + C A G + +G V P
Sbjct: 159 GHPCTRTPHFLRIQNVEVNAGQFATFQCSAIGRTVAGDRLWLQGIDVRDAPLKEIKVTSS 218
Query: 294 VTQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVREFCVLPKGTFTLG------- 346
+ + K DAG + C + G V + +P L
Sbjct: 219 RRFIASFNVVNTTKRDAGKYRCMIRTEGGVGISNYAELVVKEPPVPIAPPQLASVGATYL 278
Query: 347 ----QPNLATGNSDL----------------RRIACDLRETDSGL-----YTC----TAS 377
N G+ + R+ L Y T
Sbjct: 279 WIQLNANSINGDGPIVAREVEYCTASGSWNDRQPVDSTSYKIGHLDPDTEYEISVLLTRP 338
Query: 378 SESGETSWSASLSVEPRPGPHAVHRMPDSGLFPGPPAAPVILNTTRGSVTLGWGEPEPRG 437
E G S +L + P P ++ +T+ W EP
Sbjct: 339 GEGGTGSPGPALRTRTKCAD------P-----MRGPRKLEVVEVKSRQITIRW-EPFGYN 386
Query: 438 GGVAPVIGYTVEYFSSDLQTGW----VVAAHRITSTSITVSDLKPDTSYMFIVRAENSHG 493
TV Y V + T+++L P T+ + N G
Sbjct: 387 VTRCHSYNLTVHYCYQVGGQEQVREEVSWDTENSHPQHTITNLSPYTNVSVKLILMNPEG 446
Query: 494 LGIPSPVSPITRTLGLNSLVPQHLLDEARARLGTKVVNLRELIPTASTAVRITWEVSWGS 553
+ T +P V T + + W
Sbjct: 447 RKESQELIVQTD-----EDLPG------------AVPTESIQGSTFEEKIFLQWR-EPTQ 488
Query: 554 VPQHLLDEARARLGTKVVNLRELIPTASTAVRITWEKYNMATVMNAATTTSYTVTHLRKF 613
+ ++ +S I V T + L
Sbjct: 489 TYGVI-------TLYEI----TYKAVSSFDPEIDLSN-QSGRVSKLGNETHFLFFGLYPG 536
Query: 614 TKYEF 618
T Y F
Sbjct: 537 TTYSF 541
Score = 71.3 bits (174), Expect = 4e-13
Identities = 41/253 (16%), Positives = 70/253 (27%), Gaps = 48/253 (18%)
Query: 410 PGPPAAPVILNTTRG-SVTLGWGEPEPRGGGVAPVIGYTVEY-------FSSDLQTGWVV 461
PG I +T + L W EP G + Y + Y DL
Sbjct: 462 PGAVPTESIQGSTFEEKIFLQWREPTQTYG---VITLYEITYKAVSSFDPEIDLSNQSGR 518
Query: 462 AAHRITSTSITVSDLKPDTSYMFIVRAENSHGLGIPSPVSPITRTLGLNSLVPQHLLDEA 521
+ T L P T+Y F +RA + G G P+ T+ P
Sbjct: 519 VSKLGNETHFLFFGLYPGTTYSFTIRASTAKGFGPPATNQFTTKI-----SAP------- 566
Query: 522 RARLGTKVVNLRELIPTASTAVRITWEV---SWGSVPQHLL-----DEARARLGTKVVNL 573
L + V + + V + + R + T+++
Sbjct: 567 ----SMPAYELETPLNQTDNTVTVMLKPAHSRGAPVSVYQIVVEEERPRRTKKTTEILKC 622
Query: 574 RELIPTASTAVRITWEKYNMA-------------TVMNAATTTSYTVTHLRKFTKYEFFL 620
+ A + + Y A T+ + T Y T L + Y +
Sbjct: 623 YPVPIHFQNASLLNSQYYFAAEFPADSLQAAQPFTIGDNKTYNGYWNTPLLPYKSYRIYF 682
Query: 621 VPFFKTVEGARLD 633
+ ++D
Sbjct: 683 QAASRANGETKID 695
Score = 52.5 bits (125), Expect = 3e-07
Identities = 21/139 (15%), Positives = 37/139 (26%), Gaps = 11/139 (7%)
Query: 93 CRVGGDPLPTILWRRDDGKMPTGRAKILDDRSLQIENVGPQDEGLYICDVENLVGSISLR 152
+V PL +W T L I P + + +
Sbjct: 98 VKVNNGPLGNPIWNISGDPTRTWN-----RAELAISTFWPNFYQVIFEVITSGHQGYLAI 152
Query: 153 ASLTVHLL---RDDFRAEPKDTRVASGETALLECGPPKGQPEPTLHWKKNGQFIDLESSK 209
+ V R ++ V +G+ A +C G+ G + K
Sbjct: 153 DEVKVLGHPCTRTPHFLRIQNVEVNAGQFATFQC-SAIGRTVAGDRLWLQGIDVRDAPLK 211
Query: 210 SLDL--SRRTLGWLRVRPL 226
+ + SRR + V
Sbjct: 212 EIKVTSSRRFIASFNVVNT 230
Score = 49.8 bits (118), Expect = 2e-06
Identities = 21/128 (16%), Positives = 32/128 (25%), Gaps = 8/128 (6%)
Query: 72 PFPISEPSDATVLSGSVVEFVCRVGGDPLPTILW---RRDDGKMPTGRAKILDDRS---- 124
+ V +G F C G + D P K+ R
Sbjct: 165 TPHFLRIQNVEVNAGQFATFQCSAIGRTVAGDRLWLQGIDVRDAPLKEIKVTSSRRFIAS 224
Query: 125 LQIENVGPQDEGLYICDVENLVGSISLRASLTVHLLRDDFRAEPKDTRVASGETAL-LEC 183
+ N +D G Y C + G + V A P+ V + + L
Sbjct: 225 FNVVNTTKRDAGKYRCMIRTEGGVGISNYAELVVKEPPVPIAPPQLASVGATYLWIQLNA 284
Query: 184 GPPKGQPE 191
G
Sbjct: 285 NSINGDGP 292
Score = 44.4 bits (104), Expect = 9e-05
Identities = 21/140 (15%), Positives = 31/140 (22%), Gaps = 46/140 (32%)
Query: 410 PGPPAAPV--ILNTTRGSVTLGWGEPEPRGGGVAPVIGYTVEYFSSDLQ----------- 456
P PA + LN T +VT+ RG PV Y + +
Sbjct: 566 PSMPAYELETPLNQTDNTVTVMLKPAHSRGA---PVSVYQIVVEEERPRRTKKTTEILKC 622
Query: 457 -------------------TGWVVAAHRITSTSITVSD-----------LKPDTSYMFIV 486
A + T+ D L P SY
Sbjct: 623 YPVPIHFQNASLLNSQYYFAAEFPADSLQAAQPFTIGDNKTYNGYWNTPLLPYKSYRIYF 682
Query: 487 RAENSHGLGIPSPVSPITRT 506
+A + +
Sbjct: 683 QAASRANGETKIDCVQVATK 702
>3oq3_B IFN-alpha/beta binding protein C12R; mousepox virus, moscow strain,
cytokine decoy RE virus/viral protein, type-1
interferon, soluble A/B-IFNR; HET: EPE; 2.10A
{Ectromelia virus}
Length = 329
Score = 124 bits (312), Expect = 1e-31
Identities = 43/307 (14%), Positives = 77/307 (25%), Gaps = 42/307 (13%)
Query: 66 KEALIKPFPISEPSDATVLSGSVVEFVCRVGGDPL---------PTILWRRDDGKMPTGR 116
+ L + G C D L + W +
Sbjct: 24 SKWLNPSCMFGGTMNDMAALGEPFSAKCPPIEDSLLSHRYNDKDNVVNWEKIGKTRRPLN 83
Query: 117 AKILDDRSLQIENVGPQDEG-LYICDVENLVGSISLRASLTVHLLRDDFRAEPKDTRVAS 175
++ + L I N D Y+C V G + E +
Sbjct: 84 RRV-KNGDLWIANYTSNDSHRRYLCTVTTKNGDCVQGIVRSHIRKPPSCIPETYELGTHD 142
Query: 176 GETALLECGPPKGQPEPTLHWKKNGQFIDLESSKSLDLSRRTLGWLRVRP----LY---- 227
L CG + + W KN Q + ++ +K + L Y
Sbjct: 143 KYGIDLYCGILYAKHYNNITWYKNNQELIIDGTKYSQSG-QNLIIHNPELEDSGRYDCYV 201
Query: 228 -------WNVARPRANLNPRYIGRKMASLLIWNHPRVN-------RLSCFAEGSPLP--- 270
N I + + P++N ++C A + L
Sbjct: 202 HYDDVRIKNDIVVSRCKILTVIPSQDHRFKLILDPKINVTIGEPANITCTAVSTSLLVDD 261
Query: 271 -SVFWTQEGSQVLMFPGNAYGHL---HVTQEGTLRIQGVQKEDAGF-FVCSALSVAGSTT 325
+ W ++ Y L E TL + V +E G + C + T
Sbjct: 262 VLIDWENPSGWIIGLDFGVYSILTSSGGITEATLYFENVTEEYIGNTYTCRGHNYYFDKT 321
Query: 326 VRAFLQV 332
+ + +
Sbjct: 322 LTTTVVL 328
Score = 69.5 bits (169), Expect = 6e-13
Identities = 18/110 (16%), Positives = 30/110 (27%), Gaps = 14/110 (12%)
Query: 62 KLIAKEALIKPFPISEPSDATVLSGSVVEFVCRVGGDPLP----TILWRRDDGKMPTGRA 117
L + F + V G C L I W G +
Sbjct: 219 ILTVIPSQDHRFKLILDPKINVTIGEPANITCTAVSTSLLVDDVLIDWENPSGWIIGLDF 278
Query: 118 KI---------LDDRSLQIENVGPQDEG-LYICDVENLVGSISLRASLTV 157
+ + + +L ENV + G Y C N +L ++ +
Sbjct: 279 GVYSILTSSGGITEATLYFENVTEEYIGNTYTCRGHNYYFDKTLTTTVVL 328
Score = 62.9 bits (152), Expect = 8e-11
Identities = 38/305 (12%), Positives = 73/305 (23%), Gaps = 89/305 (29%)
Query: 167 EPKDTRVASGETALLECGPPKGQPEPTLHWKKNGQFIDLESSKSLDLSRRTL--GWLRVR 224
+ A GE +C P + + K+ + K+ R + G L +
Sbjct: 35 GTMNDMAALGEPFSAKCPPIEDSLLSHRYNDKDNVVNWEKIGKTRRPLNRRVKNGDLWIA 94
Query: 225 PL--------YWNVARPRANLNPRYIGRKMASLL------IWNHPRVN---------RLS 261
Y + L
Sbjct: 95 NYTSNDSHRRYLCTVT-----TKNGDCVQGIVRSHIRKPPSCIPETYELGTHDKYGIDLY 149
Query: 262 C-FAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSV 320
C ++ W + ++++ G + L I + ED+G + C
Sbjct: 150 CGILYAKHYNNITWYKNNQELII-----DGTKYSQSGQNLIIHNPELEDSGRYDCYVHYD 204
Query: 321 AGST------TVRAFLQVRE-------FCVLPKGTFTLGQP-NL---ATGNSDLRRIAC- 362
+ L V + PK T+G+P N+ A S L
Sbjct: 205 DVRIKNDIVVSRCKILTVIPSQDHRFKLILDPKINVTIGEPANITCTAVSTSLLVDDVLI 264
Query: 363 ----------------------------------DLRETDSG-LYTCTASSESGETSWSA 387
++ E G YTC + + + +
Sbjct: 265 DWENPSGWIIGLDFGVYSILTSSGGITEATLYFENVTEEYIGNTYTCRGHNYYFDKTLTT 324
Query: 388 SLSVE 392
++ +E
Sbjct: 325 TVVLE 329
Score = 50.6 bits (120), Expect = 7e-07
Identities = 32/287 (11%), Positives = 62/287 (21%), Gaps = 75/287 (26%)
Query: 258 NRLSCFAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAG-FFVCS 316
+ L V W + G P N + G L I D+ ++C+
Sbjct: 56 DSLLSHRYNDKDNVVNWEKIGKTRR--PLN-----RRVKNGDLWIANYTSNDSHRRYLCT 108
Query: 317 ALSVAGSTTVRAF-LQVRE---------------------FCVLPKG------------- 341
+ G +R+ +C +
Sbjct: 109 VTTKNGDCVQGIVRSHIRKPPSCIPETYELGTHDKYGIDLYCGILYAKHYNNITWYKNNQ 168
Query: 342 TFTLGQPNLATGNSDLRRIACDLRETDSGLYTCTASSESGETSWSASLSVEPRPGPHAVH 401
+ + +L I + DSG Y C + +S
Sbjct: 169 ELIIDGTKYSQSGQNLI-IH-NPELEDSGRYDCYVHYDDVRIKNDIVVSRCKIL------ 220
Query: 402 RMPDSGLFPGPPAAPVILNTTRGS-VTL---GWGEPEPR----------GGGVAPVIGYT 447
+ S +N T G + G + +
Sbjct: 221 TVIPSQDHRFKLILDPKINVTIGEPANITCTAVSTSLLVDDVLIDWENPSGWIIGLDFGV 280
Query: 448 VEYFSSDLQTGWVVAAHRITSTSITVSDLKP-DTSYMFIVRAENSHG 493
+S IT ++ ++ + R N +
Sbjct: 281 YSILTSS---------GGITEATLYFENVTEEYIGNTYTCRGHNYYF 318
>1rhf_A Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3 family, cellular
adhesion, ligand-independent DIME mutational analysis,
transferase; HET: EPE; 1.96A {Homo sapiens} SCOP:
b.1.1.1 b.1.1.4
Length = 182
Score = 119 bits (301), Expect = 1e-31
Identities = 41/155 (26%), Positives = 57/155 (36%), Gaps = 10/155 (6%)
Query: 72 PFPISEPSDATVLSGSVVEFVCRVGGDPLPTILWRRDDGKMPTGRAKILDDR------SL 125
+ P TV G V+ C V G P I W +D + + L
Sbjct: 3 LKLMGAPVKLTVSQGQPVKLNCSVEGMEEPDIQWVKDGAVVQNLDQLYIPVSEQHWIGFL 62
Query: 126 QIENVGPQDEGLYICDVENLVGS-ISLRASLTVHLLRDDFRAEPKDTRVASGETALLECG 184
+++V D G Y C VE+ + IS LTV + F EPKD V L C
Sbjct: 63 SLKSVERSDAGRYWCQVEDGGETEISQPVWLTVEGV-PFFTVEPKDLAVPPNAPFQLSC- 120
Query: 185 PPKGQPEP-TLHWKKNGQFIDLESSKSLDLSRRTL 218
G PEP T+ W + I + L+ +
Sbjct: 121 EAVGPPEPVTIVWWRGTTKIGGPAPSPSVLNVTGV 155
Score = 78.3 bits (193), Expect = 6e-17
Identities = 32/191 (16%), Positives = 65/191 (34%), Gaps = 34/191 (17%)
Query: 164 FRAEPKDTRVASGETALLECGPPKGQPEPTLHWKKNGQFIDLESSKSLDLSRRT-LGWLR 222
P V+ G+ L C +G EP + W K+G + + +S + +G+L
Sbjct: 5 LMGAPVKLTVSQGQPVKLNCSV-EGMEEPDIQWVKDGAVVQNLDQLYIPVSEQHWIGFLS 63
Query: 223 VRPL-------YWNVAR--------PRANLN---PRYIGRKMASLLIWNHPRVNRLSCFA 264
++ + YW L + + L + + +LSC A
Sbjct: 64 LKSVERSDAGRYWCQVEDGGETEISQPVWLTVEGVPFFTVEPKDLAVPPNAPF-QLSCEA 122
Query: 265 EGSPLP-SVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGS 323
G P P ++ W + ++ + + + F C A ++ G
Sbjct: 123 VGPPEPVTIVWWRGTTK-----------IGGPAPSPSVLNVTGVTQSTMFSCEAHNLKGL 171
Query: 324 TTVR-AFLQVR 333
+ R A + ++
Sbjct: 172 ASSRTATVHLQ 182
Score = 76.4 bits (188), Expect = 2e-16
Identities = 34/162 (20%), Positives = 60/162 (37%), Gaps = 28/162 (17%)
Query: 259 RLSCFAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSAL 318
+L+C EG P + W ++G+ V G L ++ V++ DAG + C
Sbjct: 21 KLNCSVEGMEEPDIQWVKDGAVVQNLDQLYIPVSEQHWIGFLSLKSVERSDAGRYWCQVE 80
Query: 319 SVAGS-TTVRAFLQVRE---FCVLPK-------GTFTL-----GQPNLAT---------- 352
+ + +L V F V PK F L G P T
Sbjct: 81 DGGETEISQPVWLTVEGVPFFTVEPKDLAVPPNAPFQLSCEAVGPPEPVTIVWWRGTTKI 140
Query: 353 -GNSDLRRIACDLRETDSGLYTCTASSESGE-TSWSASLSVE 392
G + + T S +++C A + G +S +A++ ++
Sbjct: 141 GGPAPSPSVLNVTGVTQSTMFSCEAHNLKGLASSRTATVHLQ 182
Score = 74.8 bits (184), Expect = 9e-16
Identities = 25/89 (28%), Positives = 34/89 (38%), Gaps = 7/89 (7%)
Query: 72 PFPISEPSDATVLSGSVVEFVCRVGGDPLP-TILWRRDDGKMPTGRAKILDDRSLQIENV 130
PF EP D V + + C G P P TI+W R K+ +
Sbjct: 99 PFFTVEPKDLAVPPNAPFQLSCEAVGPPEPVTIVWWRGTTKIGGP-----APSPSVLNVT 153
Query: 131 GPQDEGLYICDVENLVGSISLRASLTVHL 159
G ++ C+ NL G S + TVHL
Sbjct: 154 GVTQSTMFSCEAHNLKGLAS-SRTATVHL 181
>3ojm_B Fibroblast growth factor receptor 2; beta trefoil motif,
immunoglobulin-like domain, growth facto factor
receptor, extracellular; 2.10A {Homo sapiens} PDB:
1nun_B* 3oj2_C 2fdb_P 1iil_E 1ev2_E 1e0o_B* 1ii4_E
1djs_A 3ojv_C* 1cvs_C 1fq9_C* 1evt_C
Length = 231
Score = 119 bits (300), Expect = 7e-31
Identities = 36/159 (22%), Positives = 57/159 (35%), Gaps = 10/159 (6%)
Query: 74 PISEPSDATVLSGSVVEFVCRVGGDPLPTILWRRDDGKMPT-----GRAKILDDRSLQIE 128
E V + + V+F C GG+P+PT+ W ++ + G SL +E
Sbjct: 22 EKMEKRLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIME 81
Query: 129 NVGPQDEGLYICDVENLVGSISLRASLTV----HLLRDDFRAEPKDTRVASGETALLECG 184
+V P D+G Y C VEN GSI+ L V P + G C
Sbjct: 82 SVVPSDKGNYTCVVENEYGSINHTYHLDVVERSRHRPILQAGLPANASTVVGGDVEFVC- 140
Query: 185 PPKGQPEPTLHWKKNGQFIDLESSKSLDLSRRTLGWLRV 223
+P + W K+ + + + L +
Sbjct: 141 KVYSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKHSGI 179
Score = 101 bits (253), Expect = 2e-24
Identities = 38/223 (17%), Positives = 63/223 (28%), Gaps = 35/223 (15%)
Query: 143 ENLVGSISLRASLTVHLLRDDFRAEPKDTRVASGETALLECGPPKGQPEPTLHWKKNGQF 202
E+ V S + + E + V + T C P G P PT+ W KNG+
Sbjct: 3 EDFVSENSNNKRAPYWT--NTEKMEKRLHAVPAANTVKFRC-PAGGNPMPTMRWLKNGKE 59
Query: 203 IDLESSKSLDLSRRTLGWLRVRPL-------Y----WNVA-----------RPRANLNPR 240
E R L + + Y N R+ P
Sbjct: 60 FKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSINHTYHLDVVERSRHRPI 119
Query: 241 YIGRKMASLLIWNHPRVNRLSCFAEGSPLPSVFWTQEGSQ---------VLMFPGNAYGH 291
A+ V C P + W + + + +
Sbjct: 120 LQAGLPANASTVVGGDV-EFVCKVYSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKHSG 178
Query: 292 LHVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVRE 334
++ + L + V + DAG ++C + G A+L V
Sbjct: 179 INSSNAEVLALFNVTEADAGEYICKVSNYIGQANQSAWLTVLP 221
Score = 90.7 bits (225), Expect = 7e-21
Identities = 29/112 (25%), Positives = 43/112 (38%), Gaps = 15/112 (13%)
Query: 62 KLIAKEALIKPFPISEPSDATVLSGSVVEFVCRVGGDPLPTILWRRDDGK---------- 111
++ + P++A+ + G VEFVC+V D P I W + K
Sbjct: 109 DVVERSRHRPILQAGLPANASTVVGGDVEFVCKVYSDAQPHIQWIKHVEKNGSKYGPDGL 168
Query: 112 -----MPTGRAKILDDRSLQIENVGPQDEGLYICDVENLVGSISLRASLTVH 158
+ + L + NV D G YIC V N +G + A LTV
Sbjct: 169 PYLKVLKHSGINSSNAEVLALFNVTEADAGEYICKVSNYIGQANQSAWLTVL 220
Score = 82.3 bits (203), Expect = 7e-18
Identities = 36/190 (18%), Positives = 60/190 (31%), Gaps = 53/190 (27%)
Query: 259 RLSCFAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQE-GTLRIQGVQKEDAGFFVCSA 317
+ C A G+P+P++ W + G + + G V + +L ++ V D G + C
Sbjct: 38 KFRCPAGGNPMPTMRWLKNGKEF--KQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVV 95
Query: 318 LSVAGSTTVRAFLQVRE--------FCVLPK-------GTFTL----------------- 345
+ GS L V E LP G
Sbjct: 96 ENEYGSINHTYHLDVVERSRHRPILQAGLPANASTVVGGDVEFVCKVYSDAQPHIQWIKH 155
Query: 346 GQPNLATGNSDLRRIAC------------------DLRETDSGLYTCTASSESGETSWSA 387
+ N + D ++ E D+G Y C S+ G+ + SA
Sbjct: 156 VEKNGSKYGPDGLPYLKVLKHSGINSSNAEVLALFNVTEADAGEYICKVSNYIGQANQSA 215
Query: 388 SLSVEPRPGP 397
L+V P+
Sbjct: 216 WLTVLPKQQA 225
Score = 44.5 bits (105), Expect = 4e-05
Identities = 18/80 (22%), Positives = 28/80 (35%), Gaps = 18/80 (22%)
Query: 363 DLRETDSGLYTCTASSESGETSWSASLSVEPRPGPHAVHRMPDSGLFPGPPAAPVILNTT 422
+ +D G YTC +E G + + L V R + L G PA N +
Sbjct: 82 SVVPSDKGNYTCVVENEYGSINHTYHLDVVERSRHRPI-------LQAGLPA-----NAS 129
Query: 423 R---GSVTLG---WGEPEPR 436
G V + + +P
Sbjct: 130 TVVGGDVEFVCKVYSDAQPH 149
>2wv3_A Neuroplastin; igcam, membrane, glycoprotein, cell membrane, cell
adhesion, transmembrane, disulfide bond, alternative
splicing; HET: NAG; 1.95A {Rattus norvegicus}
Length = 190
Score = 116 bits (293), Expect = 2e-30
Identities = 28/142 (19%), Positives = 49/142 (34%), Gaps = 6/142 (4%)
Query: 71 KPFPISEPSDATVLSGSVVEFVCRVGGDPLP--TILWRRDDGKMPTGRAKILDDRSLQIE 128
+P ++ S V C + W ++ ++ R K + +I
Sbjct: 3 EPRIVTSEEVIIRDSLLPVTLQCNLTSSSHTLMYSYWTKNGVELTATR-KNASNMEYRIN 61
Query: 129 NVGPQDEGLYICDVENLVGSISLRASLTVHLLRDDFRAEPKDTRVASGETALLECGPPKG 188
+D G Y C V + V + A++ V D + G+ A++ C G
Sbjct: 62 KPRAEDSGEYHC-VYHFVSAPKANATIEVK-AAPDITGHKRSENKNEGQDAMMYCK-SVG 118
Query: 189 QPEPTLHWKKNGQFIDLESSKS 210
P P W+K + E S S
Sbjct: 119 YPHPEWMWRKKENGVFEEISNS 140
Score = 97.6 bits (243), Expect = 1e-23
Identities = 39/191 (20%), Positives = 63/191 (32%), Gaps = 28/191 (14%)
Query: 164 FRAEPKDTRVASGETALLEC---GPPKGQPEPTLHWKKNGQFIDLESSKSLDLSRRTLGW 220
+ S L+C +W KNG + + S
Sbjct: 6 IVTSEEVIIRDSLLPVTLQCNLTSSSH--TLMYSYWTKNGVELTATRK---NASNMEYRI 60
Query: 221 LRVRP----LYW----NVARPRANLN------PRYIGRKMASLLIWNHPRVNRLSCFAEG 266
+ R Y V+ P+AN P G K + + + C + G
Sbjct: 61 NKPRAEDSGEYHCVYHFVSAPKANATIEVKAAPDITGHKRSENKNEGQDAM--MYCKSVG 118
Query: 267 SPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGT---LRIQGVQ-KEDAGFFVCSALSVAG 322
P P W ++ + V N+ G + + L I +Q ED G + C+A + G
Sbjct: 119 YPHPEWMWRKKENGVFEEISNSSGRFFIINKENYTELNIVNLQITEDPGEYECNATNSIG 178
Query: 323 STTVRAFLQVR 333
S +V L+VR
Sbjct: 179 SASVSTVLRVR 189
Score = 86.1 bits (213), Expect = 1e-19
Identities = 24/100 (24%), Positives = 37/100 (37%), Gaps = 10/100 (10%)
Query: 69 LIKPFPISEPSDATVLSGSVVEFVCRVGGDPLPTILWRRDDGKMP------TGRAKILDD 122
P G C+ G P P +WR+ + + +GR I++
Sbjct: 90 KAAPDITGHKRSENKNEGQDAMMYCKSVGYPHPEWMWRKKENGVFEEISNSSGRFFIINK 149
Query: 123 ---RSLQIENV-GPQDEGLYICDVENLVGSISLRASLTVH 158
L I N+ +D G Y C+ N +GS S+ L V
Sbjct: 150 ENYTELNIVNLQITEDPGEYECNATNSIGSASVSTVLRVR 189
Score = 68.3 bits (167), Expect = 2e-13
Identities = 28/175 (16%), Positives = 45/175 (25%), Gaps = 50/175 (28%)
Query: 259 RLSCFAEGSPLP--SVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCS 316
L C S +WT+ G ++ RI + ED+G + C
Sbjct: 22 TLQCNLTSSSHTLMYSYWTKNGVEL---TATR----KNASNMEYRINKPRAEDSGEYHCV 74
Query: 317 ALSVAGSTTVRAFLQVRE---FCVLPK-------GTFTL-----GQPN------------ 349
+ A ++V+ + + G P+
Sbjct: 75 Y-HFVSAPKANATIEVKAAPDITGHKRSENKNEGQDAMMYCKSVGYPHPEWMWRKKENGV 133
Query: 350 -------------LATGNSDLRRIACDLRETDSGLYTCTASSESGETSWSASLSV 391
+ N I D G Y C A++ G S S L V
Sbjct: 134 FEEISNSSGRFFIINKENYTELNIVNLQITEDPGEYECNATNSIGSASVSTVLRV 188
Score = 35.2 bits (81), Expect = 0.036
Identities = 24/140 (17%), Positives = 35/140 (25%), Gaps = 32/140 (22%)
Query: 363 DLRETDSGLYTCTASSESGETSWSASLSVEPRPGPHAVHRMPDSGLFPGPPAAPVILNTT 422
R DSG Y C +A++ V+ P G
Sbjct: 62 KPRAEDSGEYHCVYHF-VSAPKANATIEVKAA--PDITGHKRSENKNEG----------- 107
Query: 423 RGSVTLG---WGEPEPR------GGGVAPVIGYTVEYFSSDLQTGWVVAAHRITSTSITV 473
+ G P P GV I + F ++ T +I
Sbjct: 108 -QDAMMYCKSVGYPHPEWMWRKKENGVFEEISNSSGRFF-------IINKENYTELNIVN 159
Query: 474 SDLKPDTSYMFIVRAENSHG 493
+ D + A NS G
Sbjct: 160 LQITEDPG-EYECNATNSIG 178
>2va4_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; transmembrane,
phosphorylation, immunoglobulin domain, membrane,
glycoprotein; HET: NAG; 1.9A {Homo sapiens} PDB: 2xy1_A*
Length = 192
Score = 116 bits (293), Expect = 2e-30
Identities = 34/144 (23%), Positives = 53/144 (36%), Gaps = 5/144 (3%)
Query: 77 EPSDATVLSGSVVEFVCRVGGDPLPTILWRRDDGKMPTGRAKIL--DDRSLQIENVGPQD 134
+ +AT G + F CR G P P I W R+ + IL + L + N+ D
Sbjct: 10 KSFNATAERGEEMTFSCRASGSPEPAISWFRNGKLIEENEKYILKGSNTELTVRNIINSD 69
Query: 135 EGLYICDVENLVGSISLRASLTVHLLRDDFRAEPKDTRVASGETALLECGPPKGQPEPTL 194
G Y+C N G +A L V ++ + K+ L C +G+P P +
Sbjct: 70 GGPYVCRATNKAGEDEKQAFLQVF-VQPHII-QLKNETTYENGQVTLVC-DAEGEPIPEI 126
Query: 195 HWKKNGQFIDLESSKSLDLSRRTL 218
WK+ R +
Sbjct: 127 TWKRAVDGFTFTEGDKSLDGRIEV 150
Score = 103 bits (258), Expect = 2e-25
Identities = 43/186 (23%), Positives = 65/186 (34%), Gaps = 24/186 (12%)
Query: 167 EPKDTRVASGETALLECGPPKGQPEPTLHWKKNGQFIDLESSKSLDLSRRTLGWLRVRP- 225
+ + GE C G PEP + W +NG+ I+ L S L +
Sbjct: 10 KSFNATAERGEEMTFSC-RASGSPEPAISWFRNGKLIEENEKYILKGSNTELTVRNIINS 68
Query: 226 ---LY----WNVA---RPRANLN----PRYIGRKMASLLIWNHPRVNRLSCFAEGSPLPS 271
Y N A +A L P I K + L C AEG P+P
Sbjct: 69 DGGPYVCRATNKAGEDEKQAFLQVFVQPHIIQLKNETTYE---NGQVTLVCDAEGEPIPE 125
Query: 272 VFWTQEGSQVLMFPGNAY--GHLHVTQE---GTLRIQGVQKEDAGFFVCSALSVAGSTTV 326
+ W + G+ G + V + +L I+ V+ D+G + C A S G
Sbjct: 126 ITWKRAVDGFTFTEGDKSLDGRIEVKGQHGSSSLHIKDVKLSDSGRYDCEAASRIGGHQK 185
Query: 327 RAFLQV 332
+L +
Sbjct: 186 SMYLDI 191
Score = 87.6 bits (217), Expect = 5e-20
Identities = 29/100 (29%), Positives = 42/100 (42%), Gaps = 12/100 (12%)
Query: 69 LIKPFPISEPSDATVLSGSVVEFVCRVGGDPLPTILWRRD-DGKMPTGRAKILDDR---- 123
++P I + + T V VC G+P+P I W+R DG T K LD R
Sbjct: 93 FVQP-HIIQLKNETTYENGQVTLVCDAEGEPIPEITWKRAVDGFTFTEGDKSLDGRIEVK 151
Query: 124 ------SLQIENVGPQDEGLYICDVENLVGSISLRASLTV 157
SL I++V D G Y C+ + +G L +
Sbjct: 152 GQHGSSSLHIKDVKLSDSGRYDCEAASRIGGHQKSMYLDI 191
Score = 87.2 bits (216), Expect = 5e-20
Identities = 40/176 (22%), Positives = 58/176 (32%), Gaps = 48/176 (27%)
Query: 259 RLSCFAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSAL 318
SC A GSP P++ W + G + ++ L ++ + D G +VC A
Sbjct: 23 TFSCRASGSPEPAISWFRNGKLIEENEK----YILKGSNTELTVRNIINSDGGPYVCRAT 78
Query: 319 SVAGSTTVRAFLQVRE---FCVLPKGTFTLGQP--------------------------- 348
+ AG +AFLQV L T
Sbjct: 79 NKAGEDEKQAFLQVFVQPHIIQLKNETTYENGQVTLVCDAEGEPIPEITWKRAVDGFTFT 138
Query: 349 ------------NLATGNSDLRRIACDLRETDSGLYTCTASSESGETSWSASLSVE 392
G+S L I D++ +DSG Y C A+S G S L +E
Sbjct: 139 EGDKSLDGRIEVKGQHGSSSL-HIK-DVKLSDSGRYDCEAASRIGGHQKSMYLDIE 192
Score = 41.7 bits (98), Expect = 2e-04
Identities = 11/33 (33%), Positives = 19/33 (57%)
Query: 363 DLRETDSGLYTCTASSESGETSWSASLSVEPRP 395
++ +D G Y C A++++GE A L V +P
Sbjct: 64 NIINSDGGPYVCRATNKAGEDEKQAFLQVFVQP 96
>1epf_A NCAM, protein (neural cell adhesion molecule); immunoglobulin fold,
glycoprotein; 1.85A {Rattus norvegicus} SCOP: b.1.1.4
b.1.1.4 PDB: 2ncm_A 3ncm_A
Length = 191
Score = 116 bits (292), Expect = 4e-30
Identities = 34/141 (24%), Positives = 55/141 (39%), Gaps = 11/141 (7%)
Query: 77 EPSDATVLSGSVVEFVCRVGGDPL-PTILWRRDDGKM---PTGRAKIL----DDRSLQIE 128
PS + G F+C+V GD I W +G+ R ++ D +L I
Sbjct: 8 VPSQGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDDDSSTLTIY 67
Query: 129 NVGPQDEGLYICDVENLVGSI-SLRASLTVHLLRDDFRAEPKDTRVASGETALLECGPPK 187
N D G+Y C V G+ ++ + + F+ P GE A++ C
Sbjct: 68 NANIDDAGIYKCVVTAEDGTQSEATVNVKIF-QKLMFKNAPTPQEFKEGEDAVIVC-DVV 125
Query: 188 GQPEPTLHWKKNGQFIDLESS 208
PT+ WK G+ + L+
Sbjct: 126 SSLPPTIIWKHKGRDVILKKD 146
Score = 96.4 bits (240), Expect = 3e-23
Identities = 29/193 (15%), Positives = 56/193 (29%), Gaps = 32/193 (16%)
Query: 164 FRAEPKDTRVASGETALLECGPPKGQPEPTLHW-KKNGQFIDLESSK-SLDLSRRTLGWL 221
P ++ GE+ C + + W NG+ + + S+ + L
Sbjct: 5 VDIVPSQGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDDDSSTL 64
Query: 222 RVRPL-------YWNVARPRANLNPR-YIGRKMASLLIWNHPRVNR-------------- 259
+ Y V ++ I+
Sbjct: 65 TIYNANIDDAGIYKCVVT-----AEDGTQSEATVNVKIFQKLMFKNAPTPQEFKEGEDAV 119
Query: 260 LSCFAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALS 319
+ C S P++ W +G V++ V L+I+G++K D G + C
Sbjct: 120 IVCDVVSSLPPTIIWKHKGRDVILKKD---VRFIVLSNNYLQIRGIKKTDEGTYRCEGRI 176
Query: 320 VAGSTTVRAFLQV 332
+A +QV
Sbjct: 177 LARGEINFKDIQV 189
Score = 96.0 bits (239), Expect = 5e-23
Identities = 22/93 (23%), Positives = 32/93 (34%), Gaps = 3/93 (3%)
Query: 69 LIKPFPISEPSDATVLSGSVVEFVCRVGGDPLPTILWRRDDGKMPT---GRAKILDDRSL 125
K + P+ G VC V PTI+W+ + R +L + L
Sbjct: 98 FQKLMFKNAPTPQEFKEGEDAVIVCDVVSSLPPTIIWKHKGRDVILKKDVRFIVLSNNYL 157
Query: 126 QIENVGPQDEGLYICDVENLVGSISLRASLTVH 158
QI + DEG Y C+ L + V
Sbjct: 158 QIRGIKKTDEGTYRCEGRILARGEINFKDIQVI 190
Score = 66.8 bits (163), Expect = 7e-13
Identities = 22/171 (12%), Positives = 45/171 (26%), Gaps = 38/171 (22%)
Query: 259 RLSCFAEGSPL-PSVFWTQEGSQVLMFPGNAYGHLHVTQE-GTLRIQGVQKEDAGFFVCS 316
C G + W + L + + TL I +DAG + C
Sbjct: 21 FFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDDDSSTLTIYNANIDDAGIYKCV 80
Query: 317 ALSVAGS-TTVRAFLQVRE---FCVLPK-------GTFTL-----------------GQP 348
+ G+ + +++ + F P + G+
Sbjct: 81 VTAEDGTQSEATVNVKIFQKLMFKNAPTPQEFKEGEDAVIVCDVVSSLPPTIIWKHKGRD 140
Query: 349 NLATGNSDLR-------RIACDLRETDSGLYTCTASSESGETSWSASLSVE 392
+ + +I +++TD G Y C + + V
Sbjct: 141 VILKKDVRFIVLSNNYLQIR-GIKKTDEGTYRCEGRILARGEINFKDIQVI 190
Score = 39.0 bits (91), Expect = 0.002
Identities = 6/34 (17%), Positives = 17/34 (50%), Gaps = 1/34 (2%)
Query: 363 DLRETDSGLYTCTASSESGE-TSWSASLSVEPRP 395
+ D+G+Y C ++E G + + ++ + +
Sbjct: 68 NANIDDAGIYKCVVTAEDGTQSEATVNVKIFQKL 101
>2yd1_A Tyrosine-protein phosphatase LAR; hydrolase; 1.80A {Drosophila
melanogaster} PDB: 3pxj_A
Length = 212
Score = 116 bits (293), Expect = 5e-30
Identities = 42/147 (28%), Positives = 65/147 (44%), Gaps = 15/147 (10%)
Query: 75 ISEPSDATVLSGSVVEFVCRVGGDPLPTILWRRDDGK--MPTGRAKIL-DDRSLQIENVG 131
I +P + V G V F C GDP P+I+WR++ K R +L + I +
Sbjct: 10 IRKPQNQGVRVGGVASFYCAARGDPPPSIVWRKNGKKVSGTQSRYTVLEQPGGISILRIE 69
Query: 132 P----QDEGLYICDVENLVG-SISLRASLTVHLLRDD------FRAEPKDTRVASGETAL 180
P +D+ Y C EN VG ++S A+LT++ P + G T L
Sbjct: 70 PVRAGRDDAPYECVAENGVGDAVSADATLTIYEGDKTPAGFPVITQGPGTRVIEVGHTVL 129
Query: 181 LECGPPKGQPEPTLHWKKNGQFIDLES 207
+ C G P P ++W KN +D+ +
Sbjct: 130 MTC-KAIGNPTPNIYWIKNQTKVDMSN 155
Score = 91.8 bits (228), Expect = 3e-21
Identities = 42/199 (21%), Positives = 82/199 (41%), Gaps = 35/199 (17%)
Query: 164 FRAEPKDTRVASGETALLECGPPKGQPEPTLHWKKNGQFIDL-ESSKSLDLSRRTLGWLR 222
+P++ V G A C +G P P++ W+KNG+ + +S ++ + LR
Sbjct: 9 IIRKPQNQGVRVGGVASFYC-AARGDPPPSIVWRKNGKKVSGTQSRYTVLEQPGGISILR 67
Query: 223 VRPL--------YWNVAR------------------PRANLNPRYIGRKMASLLIWNHPR 256
+ P+ Y VA + I + + +I
Sbjct: 68 IEPVRAGRDDAPYECVAENGVGDAVSADATLTIYEGDKTPAGFPVITQGPGTRVIEVGHT 127
Query: 257 VNRLSCFAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCS 316
V ++C A G+P P+++W + ++V M + ++G L+I+ ++ED G + C
Sbjct: 128 V-LMTCKAIGNPTPNIYWIKNQTKVDMSNP-----RYSLKDGFLQIENSREEDQGKYECV 181
Query: 317 ALSVAGSTTVRA-FLQVRE 334
A + G+ +A L V+
Sbjct: 182 AENSMGTEHSKATNLYVKV 200
Score = 87.5 bits (217), Expect = 6e-20
Identities = 30/108 (27%), Positives = 44/108 (40%), Gaps = 3/108 (2%)
Query: 65 AKEALIKPFPISEPSDATVLSGSVVEFVCRVGGDPLPTILWRRDDGKM-PTGRAKILDDR 123
K P P + G V C+ G+P P I W ++ K+ + L D
Sbjct: 104 DKTPAGFPVITQGPGTRVIEVGHTVLMTCKAIGNPTPNIYWIKNQTKVDMSNPRYSLKDG 163
Query: 124 SLQIENVGPQDEGLYICDVENLVGSISLRAS-LTVHLLRDDFRAEPKD 170
LQIEN +D+G Y C EN +G+ +A+ L V +R
Sbjct: 164 FLQIENSREEDQGKYECVAENSMGTEHSKATNLYVK-VRRVGTKHHHH 210
Score = 74.1 bits (182), Expect = 3e-15
Identities = 40/181 (22%), Positives = 58/181 (32%), Gaps = 47/181 (25%)
Query: 259 RLSCFAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQ----KEDAGFFV 314
C A G P PS+ W + G +V + + Q G + I ++ D +
Sbjct: 25 SFYCAARGDPPPSIVWRKNGKKVSGTQSR---YTVLEQPGGISILRIEPVRAGRDDAPYE 81
Query: 315 CSALSVAGST-TVRAFLQVREFCVLPKG--TFTLGQPNL-------------ATGN---- 354
C A + G + A L + E P G T G A GN
Sbjct: 82 CVAENGVGDAVSADATLTIYEGDKTPAGFPVITQGPGTRVIEVGHTVLMTCKAIGNPTPN 141
Query: 355 ------------SDLRRIA-------CDLRETDSGLYTCTASSESGE-TSWSASLSVEPR 394
S+ R + RE D G Y C A + G S + +L V+ R
Sbjct: 142 IYWIKNQTKVDMSNPRYSLKDGFLQIENSREEDQGKYECVAENSMGTEHSKATNLYVKVR 201
Query: 395 P 395
Sbjct: 202 R 202
Score = 35.2 bits (81), Expect = 0.041
Identities = 18/89 (20%), Positives = 25/89 (28%), Gaps = 25/89 (28%)
Query: 359 RIACDLRETDSGLYTCTASSESGET-SWSASLSVEPRPGPHAVHRMPDSGLFPGPPAAPV 417
RI D Y C A + G+ S A+L++ P PV
Sbjct: 67 RIEPVRAGRDDAPYECVAENGVGDAVSADATLTIYEGD--------------KTPAGFPV 112
Query: 418 ILNT-TRGSVTLG---------WGEPEPR 436
I + +G G P P
Sbjct: 113 ITQGPGTRVIEVGHTVLMTCKAIGNPTPN 141
>2y23_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin-
like; 2.50A {Homo sapiens}
Length = 312
Score = 118 bits (297), Expect = 1e-29
Identities = 41/314 (13%), Positives = 79/314 (25%), Gaps = 56/314 (17%)
Query: 70 IKPFPISEPSDATVLSGSVVEFVCRVGGDPLPTILWRRDDGKM-PTGRAKILDD---RSL 125
I PF + + F C P W +D + R ++ +
Sbjct: 2 IDPFTKEVVVNVDDDGVISLNFECDKM-TPKSEFSWSKDYVSTEDSPRLEVESKGNKTKM 60
Query: 126 QIENVGPQDEGLYICDVENLVGSISLRASLTVHLLRD-----------DFRAEPKDTRVA 174
+++G D G+Y CDV + G S L R +
Sbjct: 61 TFKDLGMDDLGIYSCDVTDTDGIASSYLIDEEELKRLLALSHEHKFPTVPVKSELAVEIL 120
Query: 175 SGETALLECGPPKGQPEPTLHWKKNGQFIDLESSKSLDLSRRT-LGWLRVRPL------- 226
K +++ N + I + + R T + + + L
Sbjct: 121 EKGQVRFWMQAEKLSGNAKVNYIFNEKEIFEGPKYKMHIDRNTGIIEMFMEKLQDEDEGT 180
Query: 227 ----------------------YWNVARPRANLNPRYIGRKMASLLIWNHPRVN-----R 259
+ + + +I ++ + + V
Sbjct: 181 YTFQLQDGKATNHSTVVLVGDVFKKLQKEAEFQRQEWIRKQGPHFVEYLSWEVTGECNVL 240
Query: 260 LSCFAEGSPLP-SVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSAL 318
L C + W ++ ++ + TL I K+DAG +
Sbjct: 241 LKCKVANIKKETHIVWYKDEREI--SVDEKH--DFKDGICTLLITEFSKKDAGIYEVILK 296
Query: 319 SVAGSTTVRAFLQV 332
G R L
Sbjct: 297 DDRGKDKSRLKLVD 310
Score = 92.7 bits (230), Expect = 9e-21
Identities = 25/179 (13%), Positives = 57/179 (31%), Gaps = 24/179 (13%)
Query: 64 IAKEALIKPFPISEPSDATVL-SGSVVEFVCRVGGDPLPTILWRRDDGKM-PTGRAKILD 121
++ E P+ +L G V ++ + + ++ ++ + K+
Sbjct: 100 LSHEHKFPTVPVKSELAVEILEKGQVRFWMQAEKLSGNAKVNYIFNEKEIFEGPKYKMHI 159
Query: 122 DR-----SLQIENVGPQDEGLYICDVENLVGSISLRASLTVHLLRDDFR----------- 165
DR + +E + +DEG Y +++ + L + + +
Sbjct: 160 DRNTGIIEMFMEKLQDEDEGTYTFQLQDGKATNHSTVVLVGDVFKKLQKEAEFQRQEWIR 219
Query: 166 ------AEPKDTRVASGETALLECGPPKGQPEPTLHWKKNGQFIDLESSKSLDLSRRTL 218
E V LL+C + E + W K+ + I ++ TL
Sbjct: 220 KQGPHFVEYLSWEVTGECNVLLKCKVANIKKETHIVWYKDEREISVDEKHDFKDGICTL 278
Score = 88.5 bits (219), Expect = 2e-19
Identities = 33/309 (10%), Positives = 69/309 (22%), Gaps = 83/309 (26%)
Query: 164 FRAEPKDTRVASGETALLECGPPKGQPEPTLHWKKNGQFIDLESSK---SLDLSRRTL-- 218
+ + + EC K P+ W K+ + +S + ++ +
Sbjct: 6 TKEVVVNVDDDGVISLNFEC--DKMTPKSEFSWSKDYVSTE-DSPRLEVESKGNKTKMTF 62
Query: 219 ------------------------GWLRVRPLYWNVARPRANLNPRYIGRKMASLLIWNH 254
+ L +A + P + ++ I
Sbjct: 63 KDLGMDDLGIYSCDVTDTDGIASSYLIDEEELKRLLALSHEHKFPTVPVKSELAVEILEK 122
Query: 255 PRVNRLSCFAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFV 314
+V + S V + ++ P T + ++ +Q ED G +
Sbjct: 123 GQVRFWMQAEKLSGNAKVNYIFNEKEIFEGPKYKMHIDRNTGIIEMFMEKLQDEDEGTYT 182
Query: 315 CSALSVAGSTTVRAFLQVREF----------------------------CVLPKGTFTL- 345
+ L F V + L
Sbjct: 183 FQLQDGKATNHSTVVLVGDVFKKLQKEAEFQRQEWIRKQGPHFVEYLSWEVTGECNVLLK 242
Query: 346 -----------------GQPNLATGNSDLRRIACDLR-----ETDSGLYTCTASSESGET 383
+ D + C L + D+G+Y + G+
Sbjct: 243 CKVANIKKETHIVWYKDEREISVDEKHDFKDGICTLLITEFSKKDAGIYEVILKDDRGKD 302
Query: 384 SWSASLSVE 392
L E
Sbjct: 303 KSRLKLVDE 311
Score = 55.8 bits (134), Expect = 1e-08
Identities = 19/220 (8%), Positives = 40/220 (18%), Gaps = 54/220 (24%)
Query: 259 RLSCFAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSAL 318
C + +P W+++ + + + + +D G + C
Sbjct: 22 NFEC-DKMTPKSEFSWSKDYVST--EDSPRLEVESKGNKTKMTFKDLGMDDLGIYSCDVT 78
Query: 319 SVAGSTT--------VRAFLQVREFCVLPKGTFTLGQPNLATGNSDLRRIAC-------- 362
G + ++ L + P +R
Sbjct: 79 DTDGIASSYLIDEEELKRLLALSHEHKFPTVPVKSELAVEILEKGQVRFWMQAEKLSGNA 138
Query: 363 ---------------------------------DLRETDSGLYTCTASSESGETSWSASL 389
L++ D G YT + L
Sbjct: 139 KVNYIFNEKEIFEGPKYKMHIDRNTGIIEMFMEKLQDEDEGTYTFQLQDGKATNHSTVVL 198
Query: 390 SVEPRPGPHAVHRMPDSGLFPGPPAAPVILNTTRGSVTLG 429
+ P + VT
Sbjct: 199 VGDVFKKLQKEAEFQRQE--WIRKQGPHFVEYLSWEVTGE 236
Score = 36.9 bits (85), Expect = 0.015
Identities = 19/143 (13%), Positives = 38/143 (26%), Gaps = 28/143 (19%)
Query: 363 DLRETDSGLYTCTASSESGETSWSASLSVEPRPGPHAVHRMPDSGLFPGPPAAPVILNTT 422
DL D G+Y+C + G S E + H + A IL
Sbjct: 64 DLGMDDLGIYSCDVTDTDGIASSYLIDEEELKRLLALSHEHKFPTVPVKSELAVEIL--E 121
Query: 423 RGSVTLGW----GEPEPRGGGVAPVIGYTVEYF--SSDLQTGWVVAAHRITST------S 470
+G V V Y ++ G +++
Sbjct: 122 KGQVRFWMQAEKLSGNA-----------KVNYIFNEKEIFEG---PKYKMHIDRNTGIIE 167
Query: 471 ITVSDLKPDTSYMFIVRAENSHG 493
+ + L+ + + + ++
Sbjct: 168 MFMEKLQDEDEGTYTFQLQDGKA 190
>1bpv_A Titin, A71, connectin; fibronectin type III; NMR {Homo sapiens}
SCOP: b.1.2.1
Length = 112
Score = 112 bits (281), Expect = 1e-29
Identities = 35/108 (32%), Positives = 43/108 (39%), Gaps = 3/108 (2%)
Query: 400 VHRMPDSGLFPGPPAAPVILNTTRGSVTLGWGEPEPRGGGVAPVIGYTVEYFSSDLQTGW 459
+H PP PV LN TR +VTL W +PE GG + Y VE
Sbjct: 1 MHHHHHHSSPIDPPGKPVPLNITRHTVTLKWAKPEYTGG--FKITSYIVEKRDLPNGRWL 58
Query: 460 VVAAHRITSTSITVSDLKPDTSYMFIVRAENSHG-LGIPSPVSPITRT 506
I TVS L D +Y F V A+N+ G + PS S
Sbjct: 59 KANFSNILENEFTVSGLTEDAAYEFRVIAKNAAGAISPPSEPSDAITC 106
Score = 28.8 bits (65), Expect = 1.8
Identities = 9/32 (28%), Positives = 14/32 (43%), Gaps = 4/32 (12%)
Query: 587 TWEKYNMATVMNAATTTSYTVTHLRKFTKYEF 618
W K N + + +TV+ L + YEF
Sbjct: 56 RWLKANFSNI----LENEFTVSGLTEDAAYEF 83
>2ibg_A CG9211-PA, GH03927P; IHOG, fibronectin type III, protein binding;
2.20A {Drosophila melanogaster} SCOP: b.1.2.1 b.1.2.1
PDB: 2ibb_A
Length = 214
Score = 114 bits (286), Expect = 4e-29
Identities = 48/236 (20%), Positives = 74/236 (31%), Gaps = 51/236 (21%)
Query: 410 PGPPAAPVILNTTRGSVTLGWGEPEPRGGGVAPVIGYTVEYFSSDLQTGWVVAAHRI--- 466
PP P + + SV L W P G P++ + V+Y + W I
Sbjct: 2 TYPPTPPNVTRLSDESVMLRWMVPRNDGL---PIVIFKVQYRMVGKRKNWQTTNDNIPYG 58
Query: 467 ---------TSTSITVSDLKPDTSYMFIVRAENSHGLGIPSPVSPITRTLGLNSLVPQHL 517
S + +V+DLKP +Y F + A S+ S S +L P
Sbjct: 59 KPKWNSELGKSFTASVTDLKPQHTYRFRILAVYSNNDNKESNTSAKFYLQPGAALDP--- 115
Query: 518 LDEARARLGTKVVNLRELIPTASTAVRITWEV---SWGSVPQHLLDEARARLGTKVVNLR 574
L + + TAV + W + + + G
Sbjct: 116 --------MPVPELLE-IEEYSETAVVLHWSLASDADEHLIT----------GYYA---- 152
Query: 575 ELIPTASTAVRITWEKYNMATVMNAATTTSYTVTHLRKFTKYEFFLVPFFKTVEGA 630
P++S +Y AT+ A S+ + L T YEF L F
Sbjct: 153 YYRPSSSA------GEYFKATIEG-AHARSFKIAPLETATMYEFKLQSFSAASASE 201
Score = 84.9 bits (210), Expect = 6e-19
Identities = 17/98 (17%), Positives = 32/98 (32%), Gaps = 4/98 (4%)
Query: 410 PGPPAAPVILNTTRGSVTLGWGEPEPRGGGVAPVIGYTVEYFSSDLQTGWVVAAHR-ITS 468
P I + +V L W + GY Y S + A +
Sbjct: 116 MPVPELLEIEEYSETAVVLHWSLASDADEH--LITGYYAYYRPSSSAGEYFKATIEGAHA 173
Query: 469 TSITVSDLKPDTSYMFIVRAENSHGLGIPSPVS-PITR 505
S ++ L+ T Y F +++ ++ S + T+
Sbjct: 174 RSFKIAPLETATMYEFKLQSFSAASASEFSALKQGRTQ 211
>3grw_A Fibroblast growth factor receptor 3; FGFR3, protein-protein
complex, receptor tyrosine kinas binding, immunoglobulin
domain, kinase, membrane, nucleotid binding; HET: NAG;
2.10A {Homo sapiens}
Length = 241
Score = 114 bits (287), Expect = 6e-29
Identities = 34/141 (24%), Positives = 51/141 (36%), Gaps = 11/141 (7%)
Query: 70 IKPFPISEPSDATVLSGSVVEFVCRVGGDPLPTILWRRDDGKMPT-----GRAKILDDRS 124
+P + V + + V F C G+P P+I W ++ + G S
Sbjct: 15 TRP-ERMDKKLLAVPAANTVRFRCPAAGNPTPSISWLKNGREFRGEHRIGGIKLRHQQWS 73
Query: 125 LQIENVGPQDEGLYICDVENLVGSISLRASLTVHLLRDD----FRAEPKDTRVASGETAL 180
L +E+V P D G Y C VEN GSI +L V P + G
Sbjct: 74 LVMESVVPSDRGNYTCVVENKFGSIRQTYTLDVLERSPHRPILQAGLPANQTAVLGSDVE 133
Query: 181 LECGPPKGQPEPTLHWKKNGQ 201
C +P + W K+ +
Sbjct: 134 FHC-KVYSDAQPHIQWLKHVE 153
Score = 99.2 bits (247), Expect = 1e-23
Identities = 37/202 (18%), Positives = 57/202 (28%), Gaps = 34/202 (16%)
Query: 165 RAEPKDTRVASGETALLECGPPKGQPEPTLHWKKNGQFIDLESSKSLDLSRRTLGWLRVR 224
R + K V + T C P G P P++ W KNG+ E R L +
Sbjct: 19 RMDKKLLAVPAANTVRFRC-PAAGNPTPSISWLKNGREFRGEHRIGGIKLRHQQWSLVME 77
Query: 225 PL-------Y----WNVA-----------RPRANLNPRYIGRKMASLLIWNHPRVNRLSC 262
+ Y N R+ P A+ V C
Sbjct: 78 SVVPSDRGNYTCVVENKFGSIRQTYTLDVLERSPHRPILQAGLPANQTAVLGSDV-EFHC 136
Query: 263 FAEGSPLPSVFWTQEGSQVLMFPGN----------AYGHLHVTQEGTLRIQGVQKEDAGF 312
P + W + G ++ V + LR+ V + D G
Sbjct: 137 KVYSDAQPHIQWLKHVEVNGSKVGPDGTPYVTVLKSWISESVEADVRLRLANVSERDGGE 196
Query: 313 FVCSALSVAGSTTVRAFLQVRE 334
++C A + G +L V
Sbjct: 197 YLCRATNFIGVAEKAFWLSVHG 218
Score = 94.2 bits (234), Expect = 7e-22
Identities = 29/139 (20%), Positives = 49/139 (35%), Gaps = 21/139 (15%)
Query: 62 KLIAKEALIKPFPISEPSDATVLSGSVVEFVCRVGGDPLPTILWRRDDGKMPT------- 114
++ + P++ T + GS VEF C+V D P I W + +
Sbjct: 105 DVLERSPHRPILQAGLPANQTAVLGSDVEFHCKVYSDAQPHIQWLKHVEVNGSKVGPDGT 164
Query: 115 ---------GRAKILDDRSLQIENVGPQDEGLYICDVENLVGSISLRASLTVHLLRDDFR 165
+ D L++ NV +D G Y+C N +G L+VH R
Sbjct: 165 PYVTVLKSWISESVEADVRLRLANVSERDGGEYLCRATNFIGVAEKAFWLSVHGPR---- 220
Query: 166 AEPKDTRVASGETALLECG 184
++ V + E +
Sbjct: 221 -AAEEELVEADEAGSVHHH 238
Score = 79.2 bits (195), Expect = 9e-17
Identities = 33/192 (17%), Positives = 51/192 (26%), Gaps = 54/192 (28%)
Query: 259 RLSCFAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQE-GTLRIQGVQKEDAGFFVCSA 317
R C A G+P PS+ W + G + + G + + + +L ++ V D G + C
Sbjct: 34 RFRCPAAGNPTPSISWLKNGREF--RGEHRIGGIKLRHQQWSLVMESVVPSDRGNYTCVV 91
Query: 318 LSVAGSTTVRAFLQVREFCVLPKGTFTLGQPNL-------------ATGN---------- 354
+ GS L V E N +
Sbjct: 92 ENKFGSIRQTYTLDVLERSPHRPILQAGLPANQTAVLGSDVEFHCKVYSDAQPHIQWLKH 151
Query: 355 ---------SDLRRIACDLR-------------------ETDSGLYTCTASSESGETSWS 386
D L+ E D G Y C A++ G +
Sbjct: 152 VEVNGSKVGPDGTPYVTVLKSWISESVEADVRLRLANVSERDGGEYLCRATNFIGVAEKA 211
Query: 387 ASLSVEPRPGPH 398
LSV
Sbjct: 212 FWLSVHGPRAAE 223
>1uem_A KIAA1568 protein; immunoglobulin-like beta-sandwich fold,
fibronectin type III, structural genomics; NMR {Homo
sapiens} SCOP: b.1.2.1
Length = 117
Score = 110 bits (276), Expect = 7e-29
Identities = 39/98 (39%), Positives = 53/98 (54%), Gaps = 3/98 (3%)
Query: 410 PGPPAAPVILNTTRGSVTLGWGEPEPRGGGVAPVIGYTVEYFSSDLQTGWVVAAHRITST 469
PGPP+ P + + T+ SVTL W P P Y +E FS + W A+ + +T
Sbjct: 16 PGPPSKPQVTDVTKNSVTLSWQPGTPGT---LPASAYIIEAFSQSVSNSWQTVANHVKTT 72
Query: 470 SITVSDLKPDTSYMFIVRAENSHGLGIPSPVSPITRTL 507
TV L+P+T Y+F+VRA N GL PSP+S RT
Sbjct: 73 LYTVRGLRPNTIYLFMVRAINPQGLSDPSPMSDPVRTQ 110
Score = 28.9 bits (65), Expect = 2.2
Identities = 13/24 (54%), Positives = 13/24 (54%)
Query: 595 TVMNAATTTSYTVTHLRKFTKYEF 618
TV N TT YTV LR T Y F
Sbjct: 64 TVANHVKTTLYTVRGLRPNTIYLF 87
>1wio_A CD4, T-cell surface glycoprotein CD4; immunoglobulin fold,
transmembrane, MHC lipoprotein, polymorphism; 3.90A
{Homo sapiens} SCOP: b.1.1.1 b.1.1.1 b.1.1.3 b.1.1.3
PDB: 1wip_A 1wiq_A 3t0e_E
Length = 363
Score = 117 bits (294), Expect = 7e-29
Identities = 54/368 (14%), Positives = 104/368 (28%), Gaps = 73/368 (19%)
Query: 86 GSVVEFVCRVGGDPLPTILWRRDDGKMPTGRAKIL---------------------DDRS 124
G VE C W+ + G +
Sbjct: 9 GDTVELTCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQGNFP 68
Query: 125 LQIENVGPQDEGLYICDVENLVGSISLRASLTVHLLRDDFRAEPKDTRVASGETALLECG 184
L I+N+ +D YIC+VE+ V LL A DT + G++ L
Sbjct: 69 LIIKNLKIEDSDTYICEVED--------QKEEVQLLVFGLTANS-DTHLLQGQSLTLTLE 119
Query: 185 PPKGQPEPTLHWKKNGQFIDLESSKSLDLSRRTLG--------------------WLRVR 224
P P++ + ++ K+L +S+ L + V
Sbjct: 120 SP-PGSSPSVQCRSPRGKN-IQGGKTLSVSQLELQDSGTWTCTVLQNQKKVEFKIDIVVL 177
Query: 225 PLYWNVARPRANLNPRYIGRKMASLLIWNHPRVNRLSCFAEGSPLPS--VFWTQEGSQVL 282
+ + + + L AE + + + + +V
Sbjct: 178 AFQKASSIVYKKEGEQVEFSFPLAFTVEKLTGSGELWWQAERASSSKSWITFDLKNKEVS 237
Query: 283 MFPGNAYGHLHVTQEGTLRIQ----GVQKEDAGFFVCSALSVAGSTTVRAFLQVREF--- 335
+ L + ++ L + Q +G + + G L V
Sbjct: 238 VKRVTQDPKLQMGKKLPLHLTLPQALPQYAGSGNLTLALEAKTGKLHQEVNLVVMRATQL 297
Query: 336 -----CVL-----PKGTFTLGQPNLATGNSDLRRIACDLRETDSGLYTCTASSESGETSW 385
C + PK +L N S + + ++G++ C S+SG+
Sbjct: 298 QKNLTCEVWGPTSPKLMLSLKLENKEAKVSKREKAV-WVLNPEAGMWQCLL-SDSGQVLL 355
Query: 386 SASLSVEP 393
+++ V P
Sbjct: 356 ESNIKVLP 363
Score = 69.8 bits (170), Expect = 6e-13
Identities = 32/275 (11%), Positives = 61/275 (22%), Gaps = 46/275 (16%)
Query: 259 RLSCFAEGSPLPSVFWTQEGSQVLMFPGNAYGH---------------LHVTQEGTLRIQ 303
L+C A W ++ ++ L L I+
Sbjct: 13 ELTCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQGNFPLIIK 72
Query: 304 GVQKEDAGFFVCSALSVAGSTTVRAFLQVREFCVLPKGTFTLGQP--------------- 348
++ ED+ ++C L V GQ
Sbjct: 73 NLKIEDSDTYICEVEDQKEEVQ----LLVFGLTANSDTHLLQGQSLTLTLESPPGSSPSV 128
Query: 349 -------NLATGNSDLRRIACDLRETDSGLYTCTASSESGETSWSASLSVEPRPGPHAVH 401
G L ++ L DSG +TCT + + + V ++
Sbjct: 129 QCRSPRGKNIQGGKTL-SVS-QLELQDSGTWTCTVLQNQKKVEFKIDIVVLAFQKASSIV 186
Query: 402 RMPDSGLFPGPPAAPVILNTTRGSVTLGW---GEPEPRGGGVAPVIGYTVEYFSSDLQTG 458
+ + GS L W + + V
Sbjct: 187 YKKEGEQVEFSFPLAFTVEKLTGSGELWWQAERASSSKSWITFDLKNKEVSVKRVTQDPK 246
Query: 459 WVVAAHRITSTSITVSDLKPDTSYMFIVRAENSHG 493
+ ++ + + S + E G
Sbjct: 247 LQMGKKLPLHLTLPQALPQYAGSGNLTLALEAKTG 281
Score = 42.9 bits (100), Expect = 2e-04
Identities = 25/158 (15%), Positives = 45/158 (28%), Gaps = 32/158 (20%)
Query: 67 EALIKPFPISEPSDATVLSGSVVEFVCRVGGDPLPTILWRRDDGKM--------PTGRAK 118
E + FP++ + SG + + I + + ++ P +
Sbjct: 192 EQVEFSFPLAFTVEKLTGSGEL-WWQAERASSSKSWITFDLKNKEVSVKRVTQDPKLQMG 250
Query: 119 ILDDRSLQIENVGPQ--DEGLYICDVENLVGSISLRASLTVHLLRDDFRAEPKDTRVASG 176
L + PQ G +E G + +L V A+
Sbjct: 251 KKLPLHLTLPQALPQYAGSGNLTLALEAKTGKLHQEVNLVV--------------MRATQ 296
Query: 177 ETALLEC---GPPKGQPEPTLHWKKNGQFIDLESSKSL 211
L C GP P+ L K + + + SK
Sbjct: 297 LQKNLTCEVWGPTS--PKLMLSLKLENK--EAKVSKRE 330
Score = 42.5 bits (99), Expect = 3e-04
Identities = 9/79 (11%), Positives = 26/79 (32%), Gaps = 12/79 (15%)
Query: 84 LSGSVVEFVCRVGGDPLPTIL--WRRDDGKMPTGRAKILDDRSLQIENVGPQDEGLYICD 141
+ C V G P ++ + ++ + + + V + G++ C
Sbjct: 294 ATQLQKNLTCEVWGPTSPKLMLSLKLENKEAKVSK-------REKAVWVLNPEAGMWQCL 346
Query: 142 VENLVGSISLRASLTVHLL 160
+ + S + + +L
Sbjct: 347 LSD---SGQVLLESNIKVL 362
>2yuw_A Myosin binding protein C, SLOW type; fibronectin III domain, SLOW-
type protein, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 110
Score = 108 bits (271), Expect = 2e-28
Identities = 25/98 (25%), Positives = 37/98 (37%), Gaps = 2/98 (2%)
Query: 409 FPGPPAAPVILNTTRGSVTLGWGEPEPRGGGVAPVIGYTVEYFSSDLQTGWVVAAHRITS 468
PP + + T +VT+ W P+ G A + GY +EY + V I
Sbjct: 7 GTSPPTLLTVDSVTDTTVTMRWRPPDHIGA--AGLDGYVLEYCFEGTEDWIVANKDLIDK 64
Query: 469 TSITVSDLKPDTSYMFIVRAENSHGLGIPSPVSPITRT 506
T T++ L D V+A N+ G P S
Sbjct: 65 TKFTITGLPTDAKIFVRVKAVNAAGASEPKYYSQPILV 102
>3rjd_A High affinity immunoglobulin gamma FC receptor I; immune system;
HET: NAG MAN FUC P33; 2.65A {Homo sapiens}
Length = 262
Score = 111 bits (280), Expect = 7e-28
Identities = 45/277 (16%), Positives = 75/277 (27%), Gaps = 45/277 (16%)
Query: 71 KPFPISEPSDATVLSGSVVEFVCRVGGDPLP-TILWRRDDGKMPTGRAKILDDRSLQIEN 129
K +P +V V C V P + W + T S +I +
Sbjct: 1 KAVITLQPPWVSVFQEETVTLHCEVLHLPGSSSTQWFLNGTATQT------STPSYRITS 54
Query: 130 VGPQDEGLYICDVENLVGSISLRASLTVHLLRDDFRAEPKDTRVASGETALLECGPPKGQ 189
D G Y C S + + + R + GE L C K +
Sbjct: 55 ASVNDSGEYRCQRGLSGRS----DPIQLEIHRGWLLLQVSSRVFTEGEPLALRCHAWKDK 110
Query: 190 PEPTLHWKKNGQFIDLESSKSLDLSRRTLGWLRVRP----LYW----NVARPR---ANLN 238
+ + +NG+ S L L+ Y R ++
Sbjct: 111 LVYNVLYYRNGKAFKFFHWNS------NLTILKTNISHNGTYHCSGMGKHRYTSAGISVT 164
Query: 239 PRYIGRKMASLLIWNHPRVN----RLSCFAEGSPLPSV----FWTQEGSQVLMFPGNAYG 290
+ + P + LSC + F GS+ L
Sbjct: 165 VKELFPAPVLNASVTSPLLEGNLVTLSCETKLLLQRPGLQLYFSFYMGSKTLR------- 217
Query: 291 HLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVR 327
+I ++ED+G + C A + G+ R
Sbjct: 218 --GRNTSSEYQILTARREDSGLYWCEAATEDGNVLKR 252
Score = 79.6 bits (196), Expect = 9e-17
Identities = 48/272 (17%), Positives = 74/272 (27%), Gaps = 67/272 (24%)
Query: 167 EPKDTRVASGETALLECGPPKGQPEPTLHWKKNGQFIDLESSKSLDLSRRTL---GWLRV 223
+P V ET L C + W NG S+ S ++ ++ G
Sbjct: 7 QPPWVSVFQEETVTLHCEVLHLPGSSSTQWFLNGTATQ-TSTPSYRITSASVNDSGE--- 62
Query: 224 RPLYWNVARPRANLNPRYIGRKMASLLIWNHPRVNR------LSCFAEGS-PLPSVFWTQ 276
Y +P + LL+ RV L C A + +V + +
Sbjct: 63 ---YRCQRGLSGRSDPIQLEIHRGWLLLQVSSRVFTEGEPLALRCHAWKDKLVYNVLYYR 119
Query: 277 EGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVREFC 336
G F N L I G + CS + T+ + V+E
Sbjct: 120 NGKAFKFFHWN----------SNLTILKTNISHNGTYHCSGMGKHRYTSAGISVTVKE-- 167
Query: 337 VLPKGTFTLGQPNLATGNSDLRRIACD--------------------------------- 363
L +L ++C+
Sbjct: 168 -LFPAPVLNASVTSPLLEGNLVTLSCETKLLLQRPGLQLYFSFYMGSKTLRGRNTSSEYQ 226
Query: 364 ---LRETDSGLYTCTASSESGE-TSWSASLSV 391
R DSGLY C A++E G S L +
Sbjct: 227 ILTARREDSGLYWCEAATEDGNVLKRSPELEL 258
Score = 64.6 bits (157), Expect = 1e-11
Identities = 42/264 (15%), Positives = 69/264 (26%), Gaps = 67/264 (25%)
Query: 260 LSCFAEGSPLP-SVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSAL 318
L C P S W G+ T + RI D+G + C
Sbjct: 21 LHCEVLHLPGSSSTQWFLNGTATQ------------TSTPSYRITSASVNDSGEYRCQRG 68
Query: 319 SVAGSTTVRA-------FLQVREFCVLPKGTFTL------------------GQP-NLAT 352
S ++ LQV L G+
Sbjct: 69 LSGRSDPIQLEIHRGWLLLQVSSRVFTEGEPLALRCHAWKDKLVYNVLYYRNGKAFKFFH 128
Query: 353 GNSDLRRIACDLRETDSGLYTCTASSESGETSWSASLSVEPRPGPHAVHRMPDSGLFPGP 412
NS+L I + +G Y C+ + TS S++V+ ++ S L G
Sbjct: 129 WNSNLT-IL-KTNISHNGTYHCSGMGKHRYTSAGISVTVKELFPAPVLNASVTSPLLEG- 185
Query: 413 PAAPVILNTTRGSVTL---GWGEPEPRGGGVAPVIGYTVEYFSSDLQTGWVVAAHRITST 469
VTL + P + ++ R TS+
Sbjct: 186 -----------NLVTLSCETKLLLQR------PGLQLYFSFYMGSKTLR-----GRNTSS 223
Query: 470 SITVSDLKPDTSYMFIVRAENSHG 493
+ + + S ++ A G
Sbjct: 224 EYQILTARREDSGLYWCEAATEDG 247
Score = 61.1 bits (148), Expect = 2e-10
Identities = 17/94 (18%), Positives = 28/94 (29%), Gaps = 4/94 (4%)
Query: 69 LIKPFPISEPSDATVLSGSVVEFVCRVGGDPL-PTILWRRDDGKMPTGRAKILDDRSLQI 127
L ++ + +L G++V C P + QI
Sbjct: 168 LFPAPVLNASVTSPLLEGNLVTLSCETKLLLQRPGLQLYFSFYMGSKTLRGRNTSSEYQI 227
Query: 128 ENVGPQDEGLYICDVENLVGSI---SLRASLTVH 158
+D GLY C+ G++ S L V
Sbjct: 228 LTARREDSGLYWCEAATEDGNVLKRSPELELQVL 261
>3s97_C Contactin-1; carbonic anhdyrase like immunoglobulin, cell adhesion
comple adhesion; HET: NAG; 2.30A {Homo sapiens}
Length = 201
Score = 109 bits (274), Expect = 1e-27
Identities = 33/166 (19%), Positives = 58/166 (34%), Gaps = 18/166 (10%)
Query: 68 ALIKPFPISEPSDATVLSGSVVEFVCRVGGDPLP--TILWRRDDGKMP----TGRAKILD 121
+ PFP E + V G + +C + W ++ + R
Sbjct: 5 GYLDPFPPEERPEVRVKEGKGMVLLCDPPYHFPDDLSYRWLLNEFPVFITMDKRRFVSQT 64
Query: 122 DRSLQIENVGPQDEGLYICDVENLVGSISLRASLTVHLLRDD---------FRAEPKDTR 172
+ +L I NV D+G Y C V + + S+ + + + + KD
Sbjct: 65 NGNLYIANVEASDKGNYSCFVSSPSITKSVFSKFIPLIPIPERTTKPYPADIVVQFKDVY 124
Query: 173 VASGETALLECGPPKGQPEPTLHWKKNGQFIDLESSKSLDLSRRTL 218
G+ LEC G P P + W+K + + S+ + S L
Sbjct: 125 ALMGQNVTLEC-FALGNPVPDIRWRKVLE--PMPSTAEISTSGAVL 167
Score = 106 bits (266), Expect = 1e-26
Identities = 26/87 (29%), Positives = 40/87 (45%)
Query: 72 PFPISEPSDATVLSGSVVEFVCRVGGDPLPTILWRRDDGKMPTGRAKILDDRSLQIENVG 131
+ + D L G V C G+P+P I WR+ MP+ L+I N+
Sbjct: 114 ADIVVQFKDVYALMGQNVTLECFALGNPVPDIRWRKVLEPMPSTAEISTSGAVLKIFNIQ 173
Query: 132 PQDEGLYICDVENLVGSISLRASLTVH 158
+DEG+Y C+ EN+ G +A + V
Sbjct: 174 LEDEGIYECEAENIRGKDKHQARIYVQ 200
Score = 96.1 bits (239), Expect = 6e-23
Identities = 42/203 (20%), Positives = 68/203 (33%), Gaps = 38/203 (18%)
Query: 160 LRDDFRAEPKDTRVASGETALLECGPPKGQPEP-TLHWKKNGQ--FIDLESSKSLDLSRR 216
L E + RV G+ +L C PP P+ + W N FI ++ + + +
Sbjct: 7 LDPFPPEERPEVRVKEGKGMVLLCDPPYHFPDDLSYRWLLNEFPVFITMDKRRFVSQTNG 66
Query: 217 TLGWLRVRP----LYWNVARPRANLNPRYIGRKMASLLIWNHPRVNR------------- 259
L V Y + + LI R +
Sbjct: 67 NLYIANVEASDKGNYSCFVS---SPSITKSVFSKFIPLIPIPERTTKPYPADIVVQFKDV 123
Query: 260 ---------LSCFAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDA 310
L CFA G+P+P + W + + P A T L+I +Q ED
Sbjct: 124 YALMGQNVTLECFALGNPVPDIRWRKVLEPM---PSTAE---ISTSGAVLKIFNIQLEDE 177
Query: 311 GFFVCSALSVAGSTTVRAFLQVR 333
G + C A ++ G +A + V+
Sbjct: 178 GIYECEAENIRGKDKHQARIYVQ 200
Score = 64.9 bits (158), Expect = 4e-12
Identities = 26/178 (14%), Positives = 47/178 (26%), Gaps = 48/178 (26%)
Query: 259 RLSCFAEGSPLP--SVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCS 316
L C S W V + G L I V+ D G + C
Sbjct: 27 VLLCDPPYHFPDDLSYRWLLNEFPVFITMDK--RRFVSQTNGNLYIANVEASDKGNYSCF 84
Query: 317 ALSVAGSTTVRAFLQVREFCVLPKGTFTLGQPNLATGNSDLRRIA-------C------- 362
S + + +V + +P+ T ++ D+ + C
Sbjct: 85 VSSPSITKSVFSKFIPLI--PIPERTTKPYPADIVVQFKDVYALMGQNVTLECFALGNPV 142
Query: 363 ----------------------------DLRETDSGLYTCTASSESGETSWSASLSVE 392
+++ D G+Y C A + G+ A + V+
Sbjct: 143 PDIRWRKVLEPMPSTAEISTSGAVLKIFNIQLEDEGIYECEAENIRGKDKHQARIYVQ 200
Score = 38.7 bits (90), Expect = 0.003
Identities = 18/81 (22%), Positives = 27/81 (33%), Gaps = 15/81 (18%)
Query: 363 DLRETDSGLYTCTASSESGETSWSASLSVEPRPGPHAVHRMPDSGLFPGPPAAPVILNTT 422
++ +D G Y+C SS S S + + +P+ P P V
Sbjct: 72 NVEASDKGNYSCFVSSPSITKSVFSKFIP--------LIPIPERTTKPYPADIVVQFKDV 123
Query: 423 R----GSVTL---GWGEPEPR 436
+VTL G P P
Sbjct: 124 YALMGQNVTLECFALGNPVPD 144
>2yux_A Myosin-binding protein C, SLOW-type; fibronectin III domain,
structural genomics., NPPSFA; NMR {Homo sapiens}
Length = 120
Score = 104 bits (262), Expect = 6e-27
Identities = 30/128 (23%), Positives = 48/128 (37%), Gaps = 18/128 (14%)
Query: 380 SGETSWSASLSVEPRPGPHAVHRMPDSGLFPGPPAAPVILNTTRGSVTLGWGEPEPRGGG 439
SG + S + + RPGP P I + +V L W P+ G
Sbjct: 3 SGSSGASIDIQIIDRPGP---------------PQIVKIEDVWGENVALTWTPPKDDGN- 46
Query: 440 VAPVIGYTVEYFSSDLQTGWVVAAHRITSTSITVSDLKPDTSYMFIVRAENSHGLGIPSP 499
A + GYT++ W TS T+++L Y F V +EN GL +
Sbjct: 47 -AAITGYTIQKADKK-SMEWFTVIEHYHRTSATITELVIGNEYYFRVFSENMCGLSEDAT 104
Query: 500 VSPITRTL 507
++ + +
Sbjct: 105 MTKESAVI 112
Score = 30.0 bits (68), Expect = 0.80
Identities = 9/24 (37%), Positives = 12/24 (50%)
Query: 595 TVMNAATTTSYTVTHLRKFTKYEF 618
TV+ TS T+T L +Y F
Sbjct: 66 TVIEHYHRTSATITELVIGNEYYF 89
>1x5x_A Fibronectin type-III domain containing protein 3A; structural
genomics, KIAA0970, NPPSFA; NMR {Homo sapiens} SCOP:
b.1.2.1
Length = 109
Score = 103 bits (259), Expect = 1e-26
Identities = 26/97 (26%), Positives = 36/97 (37%), Gaps = 3/97 (3%)
Query: 410 PGPPAAPVILNTTRGSVTLGWGEPEPRGGGVAPVIGYTVEYFSSDLQTGWVVAAHRITST 469
P PA+PV+ ++L W +P I Y +E +
Sbjct: 8 PSMPASPVLTKAGITWLSLQWSKPSGTPS--DEGISYILEMEEET-SGYGFKPKYDGEDL 64
Query: 470 SITVSDLKPDTSYMFIVRAENSHGLGIPSPVSPITRT 506
+ TV +L+ T Y F V A NS G PS V T
Sbjct: 65 AYTVKNLRRSTKYKFKVIAYNSEGKSNPSEVVEFTTC 101
Score = 27.7 bits (62), Expect = 4.5
Identities = 9/18 (50%), Positives = 13/18 (72%)
Query: 601 TTTSYTVTHLRKFTKYEF 618
+YTV +LR+ TKY+F
Sbjct: 62 EDLAYTVKNLRRSTKYKF 79
>2c5d_C AXL oncogene, tyrosine-protein kinase receptor UFO; signaling
protein/receptor, growth regulation/complex, vitamin
K-dependent protein; HET: NAG; 3.3A {Homo sapiens}
Length = 195
Score = 103 bits (258), Expect = 1e-25
Identities = 36/160 (22%), Positives = 57/160 (35%), Gaps = 21/160 (13%)
Query: 72 PFPISEPSDATVLSGSVVEFVCRV--GGDPLPTILWRRDDGKMPTG-------------R 116
PF + P + T G C++ G+P P + W RD + +
Sbjct: 4 PF-VGNPGNITGARGLTGTLRCQLQVQGEP-PEVHWLRDGQILELADSTQTQVPLGEDEQ 61
Query: 117 AKILDDRSLQIENVGPQDEGLYICDVENLVGSI-SLRASLTVHLLRDDFRAEPKDTRVAS 175
+ L+I ++ D G Y C V + S + + L F EP+D VA+
Sbjct: 62 DDWIVVSQLRITSLQLSDTGQYQCLVFLGHQTFVSQPGYVGLEGL-PYFLEEPEDRTVAA 120
Query: 176 GETALLECGPPKGQPEPT-LHWKKNGQFIDLESSKSLDLS 214
L C +G PEP L W ++ + S
Sbjct: 121 NTPFNLSC-QAQGPPEPVDLLWLQDAVPLATAPGHGPQRS 159
Score = 82.3 bits (203), Expect = 3e-18
Identities = 42/204 (20%), Positives = 66/204 (32%), Gaps = 41/204 (20%)
Query: 164 FRAEPKDTRVASGETALLECGPPKGQPEPTLHWKKNGQFIDLESSKSLDLSRRTL----- 218
F P + A G T L C P +HW ++GQ ++L S +
Sbjct: 5 FVGNPGNITGARGLTGTLRCQLQVQGEPPEVHWLRDGQILELADSTQTQVPLGEDEQDDW 64
Query: 219 ---GWLRVRPL-------YWNVAR--------PRANLN---PRYIGRKMASLLIWNHPRV 257
LR+ L Y + + Y + + +
Sbjct: 65 IVVSQLRITSLQLSDTGQYQCLVFLGHQTFVSQPGYVGLEGLPYFLEEPEDRTVAANTPF 124
Query: 258 NRLSCFAEGSPLP-SVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCS 316
LSC A+G P P + W Q+ + PG+ + +L + G+ F C
Sbjct: 125 -NLSCQAQGPPEPVDLLWLQDAVPLATAPGHG-------PQRSLHVPGL--NKTSSFSCE 174
Query: 317 ALSVAGSTTVRAFLQVREFCVLPK 340
A + G TT R VLP+
Sbjct: 175 AHNAKGVTTSRTATIT----VLPQ 194
Score = 76.9 bits (189), Expect = 3e-16
Identities = 24/89 (26%), Positives = 38/89 (42%), Gaps = 5/89 (5%)
Query: 71 KPFPISEPSDATVLSGSVVEFVCRVGGDPLPT-ILWRRDDGKMPTGRAKILDDRSLQIEN 129
P+ + EP D TV + + C+ G P P +LW +D + T RSL +
Sbjct: 106 LPYFLEEPEDRTVAANTPFNLSCQAQGPPEPVDLLWLQDAVPLATAP-GHGPQRSLHVPG 164
Query: 130 VGPQDEGLYICDVENLVGSI-SLRASLTV 157
+ + C+ N G S A++TV
Sbjct: 165 L--NKTSSFSCEAHNAKGVTTSRTATITV 191
Score = 65.3 bits (159), Expect = 2e-12
Identities = 33/175 (18%), Positives = 56/175 (32%), Gaps = 40/175 (22%)
Query: 259 RLSC--FAEGSPLPSVFWTQEGSQV-------LMFPGNAYGHLHVTQEGTLRIQGVQKED 309
L C +G P P V W ++G + P LRI +Q D
Sbjct: 21 TLRCQLQVQGEP-PEVHWLRDGQILELADSTQTQVPLGEDEQDDWIVVSQLRITSLQLSD 79
Query: 310 AGFFVCSALSVAGSTTVR-AFLQVRE---FCVLPK-------GTFTL-----GQPN---- 349
G + C + + ++ + F P+ F L G P
Sbjct: 80 TGQYQCLVFLGHQTFVSQPGYVGLEGLPYFLEEPEDRTVAANTPFNLSCQAQGPPEPVDL 139
Query: 350 --------LATGNSDLRRIA-CDLRETDSGLYTCTASSESGET-SWSASLSVEPR 394
LAT + + + ++C A + G T S +A+++V P+
Sbjct: 140 LWLQDAVPLATAPGHGPQRSLHVPGLNKTSSFSCEAHNAKGVTTSRTATITVLPQ 194
>1x4z_A Biregional cell adhesion molecule-related/DOWN- regulated oncogenes
(CDON)binding...; fibronectin type III, FN3; NMR {Mus
musculus} SCOP: b.1.2.1
Length = 121
Score = 100 bits (252), Expect = 2e-25
Identities = 31/101 (30%), Positives = 42/101 (41%), Gaps = 5/101 (4%)
Query: 410 PGPPAAPVILNTTRGSVTLGWGEPEPRGGGVAPVIGYTVEYFSSDLQTGWVVAAHRI--T 467
P P P I + SV + W P GG P+ + VEY W++A I +
Sbjct: 18 PEAPDRPTISTASETSVYVTW-IPRGNGG--FPIQSFRVEYKKLKKVGDWILATSAIPPS 74
Query: 468 STSITVSDLKPDTSYMFIVRAENSHGLGIPSPVSPITRTLG 508
S+ ++ L+ SY F VRA N G PS S G
Sbjct: 75 RLSVEITGLEKGISYKFRVRALNMLGESEPSAPSRPYVVSG 115
Score = 28.9 bits (65), Expect = 1.8
Identities = 8/32 (25%), Positives = 11/32 (34%), Gaps = 3/32 (9%)
Query: 587 TWEKYNMATVMNAATTTSYTVTHLRKFTKYEF 618
W A + S +T L K Y+F
Sbjct: 63 DWILATSAIPPS---RLSVEITGLEKGISYKF 91
>1x5y_A Myosin binding protein C, fast-type; fast MYBP-C, fibronectin type
III domain containing protein, cytoskeleton, muscle
contraction; NMR {Mus musculus} SCOP: b.1.2.1
Length = 111
Score = 100 bits (250), Expect = 2e-25
Identities = 21/97 (21%), Positives = 31/97 (31%), Gaps = 2/97 (2%)
Query: 410 PGPPAAPVILNTTRGSVTLGWGEPEPRGGGVAPVIGYTVEYFSSDLQTGWVVAAHRITST 469
P + + T + TL W P+ G + GY VEY + +
Sbjct: 9 TSAPQHLTVEDVTDTTTTLKWRPPDRIGA--GGIDGYLVEYCLEGSEEWVPANKEPVERC 66
Query: 470 SITVSDLKPDTSYMFIVRAENSHGLGIPSPVSPITRT 506
TV DL +F V N G P+ +
Sbjct: 67 GFTVKDLPTGARILFRVVGVNIAGRSEPATLLQPVTI 103
Score = 26.9 bits (60), Expect = 7.4
Identities = 7/32 (21%), Positives = 9/32 (28%), Gaps = 4/32 (12%)
Query: 587 TWEKYNMATVMNAATTTSYTVTHLRKFTKYEF 618
W N V +TV L + F
Sbjct: 54 EWVPANKEPV----ERCGFTVKDLPTGARILF 81
>3mjg_X Beta-type platelet-derived growth factor receptor; protein-protein
complex, growth factor-receptor complex, TRA hormone
complex; HET: NDG NAG; 2.30A {Homo sapiens}
Length = 289
Score = 105 bits (263), Expect = 2e-25
Identities = 38/291 (13%), Positives = 72/291 (24%), Gaps = 44/291 (15%)
Query: 79 SDATVLSGSVVEFVCRVGGDPLPTILWRRDDGKMPTGRAKILDDR---SLQIENVGPQDE 135
+ + S C ++W R + P AK D L + N+ D
Sbjct: 8 PELVLNVSSTFVLTCSGSA----PVVWERMSQEPPQEMAKAQDGTFSSVLTLTNLTGLDT 63
Query: 136 GLYICDVENLVGSISLRAS---LTVHLLRDDFRAEPKDTR---VASGETALLECGPPKGQ 189
G Y C + G + + V F + + + C
Sbjct: 64 GEYFCTHNDSRGLETDERKRLYIFVPDPTVGFLPNDAEELFIFLTEITEITIPCRV--TD 121
Query: 190 PEPTLHWKKNGQFIDLESSKSLDLSRRTLGWLRVRPLYWNVARPRANLNPRYIGRKMASL 249
P+ + + + L +R + Y + R + +
Sbjct: 122 PQLVVTLHEKKGDVALPVPYD---HQRGFSGIFEDRSYICKTT----IGDREVDSDAYYV 174
Query: 250 LIWNHPRVN----------------RLSCFAEGSPLPSVFWTQEGSQVLMFPGNAYGHL- 292
+N L C G+ + + WT + L
Sbjct: 175 YRLQVSSINVSVNAVQTVVRQGENITLMCIVIGNEVVNFEWTYPRKESGRLVEPVTDFLL 234
Query: 293 --HVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVREFCVLPKG 341
L I + ED+G + C+ + + V+ G
Sbjct: 235 DMPYHIRSILHIPSAELEDSGTYTCNVTESVNDHQDEKAINIT---VVESG 282
Score = 73.2 bits (179), Expect = 2e-14
Identities = 23/146 (15%), Positives = 34/146 (23%), Gaps = 9/146 (6%)
Query: 74 PISEPSDATVLSGSVVEFVCRVGGDPLPTILWRRDDGKMPTGRAKILDDRSLQIENVGPQ 133
+E + + + CRV DP + G + Q G
Sbjct: 98 NDAEELFIFLTEITEITIPCRVT-DPQLVVTLHEKKGDVALPVP-----YDHQRGFSGIF 151
Query: 134 DEGLYICDVENLVGSISLRASLTVHLLRD--DFRAEPKDTRVASGETALLECGPPKGQPE 191
++ YIC + A L + T V GE L C G
Sbjct: 152 EDRSYICKTTIGDREVDSDAYYVYRLQVSSINVSVNAVQTVVRQGENITLMC-IVIGNEV 210
Query: 192 PTLHWKKNGQFIDLESSKSLDLSRRT 217
W + D
Sbjct: 211 VNFEWTYPRKESGRLVEPVTDFLLDM 236
Score = 71.7 bits (175), Expect = 6e-14
Identities = 14/103 (13%), Positives = 27/103 (26%), Gaps = 9/103 (8%)
Query: 71 KPFPISEPSDATVLSGSVVEFVCRVGGDPLPTILWRRDDGKM---------PTGRAKILD 121
V G + +C V G+ + W +
Sbjct: 181 SINVSVNAVQTVVRQGENITLMCIVIGNEVVNFEWTYPRKESGRLVEPVTDFLLDMPYHI 240
Query: 122 DRSLQIENVGPQDEGLYICDVENLVGSISLRASLTVHLLRDDF 164
L I + +D G Y C+V V ++ + ++
Sbjct: 241 RSILHIPSAELEDSGTYTCNVTESVNDHQDEKAINITVVESGH 283
Score = 47.8 bits (113), Expect = 5e-06
Identities = 30/296 (10%), Positives = 66/296 (22%), Gaps = 87/296 (29%)
Query: 173 VASGETALLECGPPKGQPEPTLHWKKNGQFIDLESSKSLDLSR-RTLGWLRVRP------ 225
+ T +L C + W++ Q E +K+ D + L +
Sbjct: 12 LNVSSTFVLTC-----SGSAPVVWERMSQEPPQEMAKAQDGTFSSVLTLTNLTGLDTGEY 66
Query: 226 --LYWNVARPRANLNPR---YIGRKMASLLIWNHPRVN---------RLSCFAEGSPLPS 271
+ + + R ++ L + + + C P
Sbjct: 67 FCTHNDSRGLETDERKRLYIFVPDPTVGFLPNDAEELFIFLTEITEITIPCRVTD-PQLV 125
Query: 272 VFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQ 331
V ++ G + + + + ++C A+
Sbjct: 126 VTLHEKK-----------GDVALPVPYDHQRGFSGIFEDRSYICKTTIGDREVDSDAYYV 174
Query: 332 VREFCVLPKGTFTLGQPNL-------------ATGNSDLR-------------------- 358
R + ++ GN +
Sbjct: 175 YRL--QVSSINVSVNAVQTVVRQGENITLMCIVIGNEVVNFEWTYPRKESGRLVEPVTDF 232
Query: 359 ------------RIACDLRETDSGLYTCTASSESGETSWSASLSVE-PRPGPHAVH 401
I DSG YTC + + ++++ G H H
Sbjct: 233 LLDMPYHIRSILHIP-SAELEDSGTYTCNVTESVNDHQDEKAINITVVESGHHHHH 287
Score = 47.4 bits (112), Expect = 7e-06
Identities = 22/180 (12%), Positives = 38/180 (21%), Gaps = 40/180 (22%)
Query: 259 RLSCFAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSAL 318
L+C V W + + P T L + + D G + C+
Sbjct: 19 VLTCSGSAP----VVWERMSQEP---PQEMAKAQDGTFSSVLTLTNLTGLDTGEYFCTHN 71
Query: 319 SVAG---STTVRAFLQVREFCVLPKGTFTLGQPNLATGNSDLRRIACD------------ 363
G R ++ V + V T +++ I C
Sbjct: 72 DSRGLETDERKRLYIFVPDPTVGFLPNDAEELFIFLTEITEI-TIPCRVTDPQLVVTLHE 130
Query: 364 -----------------LRETDSGLYTCTASSESGETSWSASLSVEPRPGPHAVHRMPDS 406
+ Y C + E A + V
Sbjct: 131 KKGDVALPVPYDHQRGFSGIFEDRSYICKTTIGDREVDSDAYYVYRLQVSSINVSVNAVQ 190
Score = 31.2 bits (70), Expect = 1.0
Identities = 15/67 (22%), Positives = 21/67 (31%), Gaps = 9/67 (13%)
Query: 363 DLRETDSGLYTCTASSESGE-TSWSASLSVEPRPGPHAVHRMPDSGLFPGPPAAPVILNT 421
+L D+G Y CT + G T L + P G P I T
Sbjct: 57 NLTGLDTGEYFCTHNDSRGLETDERKRLYIFVPD--------PTVGFLPNDAEELFIFLT 108
Query: 422 TRGSVTL 428
+T+
Sbjct: 109 EITEITI 115
>4dep_C Interleukin-1 receptor accessory protein; B-trefoil,
immunoglobulin, immune system, extracellular; HET: NAG;
3.10A {Homo sapiens} PDB: 3o4o_B*
Length = 349
Score = 106 bits (264), Expect = 4e-25
Identities = 45/327 (13%), Positives = 74/327 (22%), Gaps = 67/327 (20%)
Query: 73 FPISEPSDATVLSGSVVEFVCRVG-----------GDPLPTILWRRDDGKMPTGRAK--- 118
+ + V C + T++W
Sbjct: 9 WGLDTMRQIQVFEDEPARIKCPLFEHFLKFNYSTAHSAGLTLIWYWTRQDRDLEEPINFR 68
Query: 119 ------ILDDRSLQIENVGPQDEGLYICDVENLVGSISLRASLTVHLLRDDFRAE---PK 169
+ L D G Y C + N + L V F + P
Sbjct: 69 LPENRISKEKDVLWFRPTLLNDTGNYTCMLRNTTYCSKVAFPLEVVQKDSCFNSPMKLPV 128
Query: 170 DTRVASGETALLEC----GPPKGQPEPTLHWKKNGQFIDLESSKSLDLSRRTL------- 218
+ C G +PT+ W I + ++ L
Sbjct: 129 HKLYIEYGIQRITCPNVDGYFPSSVKPTITWYMGCYKIQ--NFNNVIPEGMNLSFLIALI 186
Query: 219 -----------------GWLRVRPLYWNVARPRANLNPRYIGRKMASLLIWNHPRVN-RL 260
+ R L V N P I ++ P +
Sbjct: 187 SNNGNYTCVVTYPENGRTFHLTRTLTVKVVGSPKNAVPPVIHSPNDHVVYEKEPGEELLI 246
Query: 261 SCFA----EGSPLPSVFWTQEGSQVLMFPGNAY--------GHLHVTQEGTLRIQGVQKE 308
C V+WT +G + + T+ L I+ V E
Sbjct: 247 PCTVYFSFLMDSRNEVWWTIDGKKPDDITIDVTINESISHSRTEDETRTQILSIKKVTSE 306
Query: 309 DAGF-FVCSALSVAGSTTVRAFLQVRE 334
D +VC A S G A ++ +
Sbjct: 307 DLKRSYVCHARSAKGEVAKAAKVKQKV 333
Score = 63.3 bits (153), Expect = 7e-11
Identities = 31/222 (13%), Positives = 56/222 (25%), Gaps = 60/222 (27%)
Query: 162 DDFRAEP-KDTRVASGETALLECG----------PPKGQPEPTLHWKKNGQFIDLE--SS 208
DD+ + + +V E A ++C TL W Q DLE +
Sbjct: 7 DDWGLDTMRQIQVFEDEPARIKCPLFEHFLKFNYSTAHSAGLTLIWYWTRQDRDLEEPIN 66
Query: 209 KSLDLSRRTL--GWLRVRPL-------YWNVARPRANLNPRYIGRKMASLLIWNHPRV-- 257
L +R + L RP Y + R N Y + L +
Sbjct: 67 FRLPENRISKEKDVLWFRPTLLNDTGNYTCMLR-----NTTYCSKVAFPLEVVQKDSCFN 121
Query: 258 ---------------------NRLSCFAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQ 296
+ + S P++ W ++ + + +
Sbjct: 122 SPMKLPVHKLYIEYGIQRITCPNVDGYFPSSVKPTITWYMGCYKIQN------FNNVIPE 175
Query: 297 EGTLRIQGVQKEDAGFFVCSA----LSVAGSTTVRAFLQVRE 334
L + G + C T ++V
Sbjct: 176 GMNLSFLIALISNNGNYTCVVTYPENGRTFHLTRTLTVKVVG 217
Score = 59.5 bits (143), Expect = 1e-09
Identities = 15/114 (13%), Positives = 30/114 (26%), Gaps = 19/114 (16%)
Query: 73 FPISEPSDATVLSGSVVEFVCRV----GGDPLPTILWRRDD--------------GKMPT 114
++ G + C V D + W D +
Sbjct: 228 HSPNDHVVYEKEPGEELLIPCTVYFSFLMDSRNEVWWTIDGKKPDDITIDVTINESISHS 287
Query: 115 GRAKILDDRSLQIENVGPQDEGL-YICDVENLVGSISLRASLTVHLLRDDFRAE 167
+ L I+ V +D Y+C + G ++ A + + + E
Sbjct: 288 RTEDETRTQILSIKKVTSEDLKRSYVCHARSAKGEVAKAAKVKQKVPAPRYTVE 341
Score = 56.4 bits (135), Expect = 1e-08
Identities = 29/291 (9%), Positives = 76/291 (26%), Gaps = 62/291 (21%)
Query: 259 RLSCFAEGSPLPSVFW--TQEGSQVLMFPGNAYGHLHVTQE-GTLRIQGVQKEDAGFFVC 315
+ + S ++ W T++ + +++E L + D G + C
Sbjct: 37 KFNYSTAHSAGLTLIWYWTRQDRDLEEPINFRLPENRISKEKDVLWFRPTLLNDTGNYTC 96
Query: 316 SALSVAGSTTVRAFLQVRE--FCVLPKGTFTLGQPNLATGNSDLR--RIAC--------- 362
+ + V L+V + C + + + G + +
Sbjct: 97 MLRNTTYCSKVAFPLEVVQKDSCFNSPMKLPVHKLYIEYGIQRITCPNVDGYFPSSVKPT 156
Query: 363 --------------------------DLRETDSGLYTCTASSESGETSWSASLSVEPRPG 396
+++G YTC + ++ + ++ +
Sbjct: 157 ITWYMGCYKIQNFNNVIPEGMNLSFLIALISNNGNYTCVVTYPENGRTFHLTRTLTVKVV 216
Query: 397 PHAVHRMPDSGLFPGPPAAPVILNTTRG-------SVTLGW-GEPEP-----RGGGVAPV 443
+ +P P V+ G +V + + G
Sbjct: 217 GSPKNAVPP---VIHSPNDHVVYEKEPGEELLIPCTVYFSFLMDSRNEVWWTIDGKKPDD 273
Query: 444 IGYTVEYFSSDLQTGWVVAAHRITSTSITVSDLKP-DTSYMFIVRAENSHG 493
I V S + + +++ + D ++ A ++ G
Sbjct: 274 ITIDVTINESISHS---RTEDETRTQILSIKKVTSEDLKRSYVCHARSAKG 321
Score = 34.8 bits (79), Expect = 0.075
Identities = 10/34 (29%), Positives = 14/34 (41%), Gaps = 1/34 (2%)
Query: 365 RETDSGLYTCTASSESGETSWSASLSVEPRPGPH 398
E Y C A S GE + +A + + P P
Sbjct: 305 SEDLKRSYVCHARSAKGEVAKAAKVKQKV-PAPR 337
>2yr3_A Myosin light chain kinase, smooth muscle; IG domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 99
Score = 98.5 bits (246), Expect = 5e-25
Identities = 28/90 (31%), Positives = 40/90 (44%), Gaps = 1/90 (1%)
Query: 70 IKPFPISEPSDATVLSGSVVEFVCRVGGDPLPTILWRRDDGKMPTGRAKILDDR-SLQIE 128
+ P S D V+ G C V G P+P I W + + R+ L I+
Sbjct: 10 VAPSFSSVLKDCAVIEGQDFVLQCSVRGTPVPRITWLLNGQPIQYARSTCEAGVAELHIQ 69
Query: 129 NVGPQDEGLYICDVENLVGSISLRASLTVH 158
+ P+D G Y C EN +G +S A +TVH
Sbjct: 70 DALPEDHGTYTCLAENALGQVSCSAWVTVH 99
Score = 61.6 bits (150), Expect = 5e-12
Identities = 18/74 (24%), Positives = 27/74 (36%), Gaps = 5/74 (6%)
Query: 259 RLSCFAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSAL 318
L C G+P+P + W G + L IQ ED G + C A
Sbjct: 30 VLQCSVRGTPVPRITWLLNGQPI-----QYARSTCEAGVAELHIQDALPEDHGTYTCLAE 84
Query: 319 SVAGSTTVRAFLQV 332
+ G + A++ V
Sbjct: 85 NALGQVSCSAWVTV 98
Score = 46.2 bits (110), Expect = 1e-06
Identities = 16/55 (29%), Positives = 25/55 (45%), Gaps = 2/55 (3%)
Query: 164 FRAEPKDTRVASGETALLECGPPKGQPEPTLHWKKNGQFIDLESSKSLDLSRRTL 218
F + KD V G+ +L+C +G P P + W NGQ I + + + L
Sbjct: 14 FSSVLKDCAVIEGQDFVLQC-SVRGTPVPRITWLLNGQPIQ-YARSTCEAGVAEL 66
Score = 38.5 bits (90), Expect = 6e-04
Identities = 15/40 (37%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
Query: 352 TGNSDLRRIACDLRETDSGLYTCTASSESGETSWSASLSV 391
G ++L I D D G YTC A + G+ S SA ++V
Sbjct: 61 AGVAELH-IQ-DALPEDHGTYTCLAENALGQVSCSAWVTV 98
>2dju_A Receptor-type tyrosine-protein phosphatase F; LAR protein,
leukocyte antigen related, structural genomics, NPPSFA;
NMR {Homo sapiens}
Length = 106
Score = 98.9 bits (247), Expect = 5e-25
Identities = 29/97 (29%), Positives = 40/97 (41%), Gaps = 6/97 (6%)
Query: 410 PGPPAAPVILNTTRGSVTLGWGEPEPRGGGVAPVIGYTVEYFSSDLQTGWVVAAHRITST 469
P PP V+ TT SVTL W PV Y ++Y ++ + G + +T
Sbjct: 8 PKPPIDLVVTETTATSVTLTWDSG-----NSEPVTYYGIQYRAAGTE-GPFQEVDGVATT 61
Query: 470 SITVSDLKPDTSYMFIVRAENSHGLGIPSPVSPITRT 506
++ L P + Y F V A NS G G PS
Sbjct: 62 RYSIGGLSPFSEYAFRVLAVNSIGRGPPSEAVRARTG 98
Score = 30.3 bits (69), Expect = 0.52
Identities = 7/24 (29%), Positives = 13/24 (54%)
Query: 595 TVMNAATTTSYTVTHLRKFTKYEF 618
++ TT Y++ L F++Y F
Sbjct: 53 QEVDGVATTRYSIGGLSPFSEYAF 76
>3lpw_A A77-A78 domain from titin; intracellular FNIII-tandem, structural
protein; 1.65A {Homo sapiens}
Length = 197
Score = 101 bits (254), Expect = 6e-25
Identities = 50/209 (23%), Positives = 72/209 (34%), Gaps = 41/209 (19%)
Query: 410 PGPPAAPVILNTTRGSVTLGWGEPEPRGGGVAPVIGYTVEYFSSDLQTGWVVAAHRITST 469
PGPP + T+ SVTL W P GG + + Y VE + + A T
Sbjct: 6 PGPPQDLKVKEVTKTSVTLTWDPPLLDGG--SKIKNYIVEK-RESTRKAYSTVATNCHKT 62
Query: 470 SITVSDLKPDTSYMFIVRAENSHGLGIPSPVSPITRTLGLNSLVPQHLLDEARARLGTKV 529
S V L+ SY F V AEN +G+G+P+ + + P +
Sbjct: 63 SWKVDQLQEGCSYYFRVLAENEYGIGLPAETAESVKASERPL-PPGKI------------ 109
Query: 530 VNLRELIPTASTAVRITWEVSWGSVPQHLLDEARARLGTKVVNLRELIPTASTAVRITWE 589
L+ +V ++WE P+H D LG V T W
Sbjct: 110 ----TLMDVTRNSVSLSWE-----KPEH--DGGSRILGYIV--------EMQTKGSDKW- 149
Query: 590 KYNMATVMNAATTTSYTVTHLRKFTKYEF 618
T T+T L + +Y F
Sbjct: 150 -----ATCATVKVTEATITGLIQGEEYSF 173
Score = 93.2 bits (232), Expect = 6e-22
Identities = 30/97 (30%), Positives = 44/97 (45%), Gaps = 4/97 (4%)
Query: 410 PGPPAAPVILNTTRGSVTLGWGEPEPRGGGVAPVIGYTVEYFSSDLQTGWVVAAHRITST 469
P PP +++ TR SV+L W +PE GG ++GY VE + W A + T
Sbjct: 103 PLPPGKITLMDVTRNSVSLSWEKPEHDGGS--RILGYIVEM-QTKGSDKWATCA-TVKVT 158
Query: 470 SITVSDLKPDTSYMFIVRAENSHGLGIPSPVSPITRT 506
T++ L Y F V A+N G+ P +S
Sbjct: 159 EATITGLIQGEEYSFRVSAQNEKGISDPRQLSVPVIA 195
>1x5f_A Neogenin; RGM binding, fibronectin type III domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
b.1.2.1
Length = 120
Score = 98.6 bits (246), Expect = 7e-25
Identities = 27/110 (24%), Positives = 39/110 (35%), Gaps = 2/110 (1%)
Query: 395 PGPHAVHRMPDSGLFPGPPAAPVILNTTRGSVTLGWGEPEPRGGGVAPVIGYTVEYFSSD 454
G H +G P P V + + L W P G + Y+V Y
Sbjct: 3 SGSSGEHAPATTGPLPSAPRDVVASLVSTRFIKLTWRTPASDPHG--DNLTYSVFYTKEG 60
Query: 455 LQTGWVVAAHRITSTSITVSDLKPDTSYMFIVRAENSHGLGIPSPVSPIT 504
+ V +T+ +L P T Y+F V A+N HG G S +
Sbjct: 61 IARERVENTSHPGEMQVTIQNLMPATVYIFRVMAQNKHGSGESSAPLRVE 110
Score = 28.1 bits (63), Expect = 3.2
Identities = 5/19 (26%), Positives = 7/19 (36%)
Query: 600 ATTTSYTVTHLRKFTKYEF 618
T+ +L T Y F
Sbjct: 72 PGEMQVTIQNLMPATVYIF 90
>1nct_A Titin; cell adhesion, glycoprotein, transmembrane, repeat, brain,
immunoglobulin fold, alternative splicing, signal,
muscle protein; NMR {Homo sapiens} SCOP: b.1.1.4 PDB:
1ncu_A 1tnm_A 1tnn_A
Length = 106
Score = 98.2 bits (245), Expect = 9e-25
Identities = 25/98 (25%), Positives = 43/98 (43%), Gaps = 4/98 (4%)
Query: 65 AKEALIKPFPISEPSDATVLSGSVVEFVCRVGGDPLPTILWRRDDGKM-PTGRAKIL--- 120
+ + + +++P TV G F C G+P+PT+ W R + + R ++
Sbjct: 8 SSKTTLAARILTKPRSMTVYEGESARFSCDTDGEPVPTVTWLRKGQVLSTSARHQVTTTK 67
Query: 121 DDRSLQIENVGPQDEGLYICDVENLVGSISLRASLTVH 158
+ +I +V DEG Y VEN G +LT+
Sbjct: 68 YKSTFEISSVQASDEGNYSVVVENSEGKQEAEFTLTIQ 105
Score = 65.5 bits (160), Expect = 3e-13
Identities = 17/76 (22%), Positives = 30/76 (39%), Gaps = 2/76 (2%)
Query: 259 RLSCFAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSAL 318
R SC +G P+P+V W ++G + + + T I VQ D G +
Sbjct: 33 RFSCDTDGEPVPTVTWLRKGQVL--STSARHQVTTTKYKSTFEISSVQASDEGNYSVVVE 90
Query: 319 SVAGSTTVRAFLQVRE 334
+ G L +++
Sbjct: 91 NSEGKQEAEFTLTIQK 106
Score = 45.0 bits (107), Expect = 4e-06
Identities = 13/40 (32%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
Query: 164 FRAEPKDTRVASGETALLECGPPKGQPEPTLHWKKNGQFI 203
+P+ V GE+A C G+P PT+ W + GQ +
Sbjct: 17 ILTKPRSMTVYEGESARFSC-DTDGEPVPTVTWLRKGQVL 55
Score = 42.7 bits (101), Expect = 3e-05
Identities = 5/30 (16%), Positives = 15/30 (50%)
Query: 363 DLRETDSGLYTCTASSESGETSWSASLSVE 392
++ +D G Y+ + G+ +L+++
Sbjct: 76 SVQASDEGNYSVVVENSEGKQEAEFTLTIQ 105
>2edj_A Roundabout homolog 2; KIAA1568 protein, beta sandwich, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 100
Score = 95.9 bits (239), Expect = 4e-24
Identities = 28/89 (31%), Positives = 40/89 (44%), Gaps = 2/89 (2%)
Query: 71 KPFPISEPSDATVLSGSVVEFVCRVGGDPLPTILWRRDDGKMPT--GRAKILDDRSLQIE 128
P + P++ T+ C+ GDPLP I W ++ P RA I + +LQI+
Sbjct: 8 PPIILQGPANQTLAVDGTALLKCKATGDPLPVISWLKEGFTFPGRDPRATIQEQGTLQIK 67
Query: 129 NVGPQDEGLYICDVENLVGSISLRASLTV 157
N+ D G Y C + G S A L V
Sbjct: 68 NLRISDTGTYTCVATSSSGETSWSAVLDV 96
Score = 75.1 bits (185), Expect = 1e-16
Identities = 25/76 (32%), Positives = 37/76 (48%), Gaps = 4/76 (5%)
Query: 259 RLSCFAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSAL 318
L C A G PLP + W +EG + ++GTL+I+ ++ D G + C A
Sbjct: 27 LLKCKATGDPLPVISWLKEGFTFPG----RDPRATIQEQGTLQIKNLRISDTGTYTCVAT 82
Query: 319 SVAGSTTVRAFLQVRE 334
S +G T+ A L V E
Sbjct: 83 SSSGETSWSAVLDVTE 98
Score = 49.3 bits (118), Expect = 1e-07
Identities = 19/31 (61%), Positives = 23/31 (74%)
Query: 363 DLRETDSGLYTCTASSESGETSWSASLSVEP 393
+LR +D+G YTC A+S SGETSWSA L V
Sbjct: 68 NLRISDTGTYTCVATSSSGETSWSAVLDVTE 98
Score = 44.7 bits (106), Expect = 4e-06
Identities = 15/55 (27%), Positives = 22/55 (40%), Gaps = 1/55 (1%)
Query: 164 FRAEPKDTRVASGETALLECGPPKGQPEPTLHWKKNGQFIDLESSKSLDLSRRTL 218
P + +A TALL+C G P P + W K G ++ + TL
Sbjct: 11 ILQGPANQTLAVDGTALLKC-KATGDPLPVISWLKEGFTFPGRDPRATIQEQGTL 64
>3puc_A Titin; I-SET IG-like domain, M-BAND, transferase; 0.96A {Homo
sapiens}
Length = 99
Score = 95.4 bits (238), Expect = 6e-24
Identities = 32/92 (34%), Positives = 46/92 (50%), Gaps = 4/92 (4%)
Query: 71 KPFPISEPSDATVLSGSVVEFVCRVGGDPLPTILWRRDDGK-MPTGRAKILDD---RSLQ 126
KP ++ D TV S SV +F + G+P PT +W +D G+ K+ +D L+
Sbjct: 6 KPVIVTGLQDTTVSSDSVAKFAVKATGEPRPTAIWTKDGKAITQGGKYKLSEDKGGFFLE 65
Query: 127 IENVGPQDEGLYICDVENLVGSISLRASLTVH 158
I D GLY C V+N GS+S LT+
Sbjct: 66 IHKTDTSDSGLYTCTVKNSAGSVSSSCKLTIK 97
Score = 62.7 bits (153), Expect = 2e-12
Identities = 18/78 (23%), Positives = 35/78 (44%), Gaps = 8/78 (10%)
Query: 259 RLSCFAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEG---TLRIQGVQKEDAGFFVC 315
+ + A G P P+ WT++G + G G ++++ L I D+G + C
Sbjct: 25 KFAVKATGEPRPTAIWTKDGKAI--TQG---GKYKLSEDKGGFFLEIHKTDTSDSGLYTC 79
Query: 316 SALSVAGSTTVRAFLQVR 333
+ + AGS + L ++
Sbjct: 80 TVKNSAGSVSSSCKLTIK 97
Score = 44.6 bits (106), Expect = 4e-06
Identities = 13/40 (32%), Positives = 18/40 (45%), Gaps = 1/40 (2%)
Query: 164 FRAEPKDTRVASGETALLECGPPKGQPEPTLHWKKNGQFI 203
+DT V+S A G+P PT W K+G+ I
Sbjct: 9 IVTGLQDTTVSSDSVAKFAV-KATGEPRPTAIWTKDGKAI 47
>3u83_A Poliovirus receptor-related protein 1; nectin-1, hinge region
plasiticity, cell adhesion; HET: PG6; 2.50A {Homo
sapiens} PDB: 3alp_A* 3u82_B 3sku_E* 2l7j_A
Length = 331
Score = 101 bits (253), Expect = 8e-24
Identities = 38/314 (12%), Positives = 93/314 (29%), Gaps = 59/314 (18%)
Query: 72 PFPISEPSDATVLSGSVVEFVCRV----GGDPLPTILWRRDDGKMPT------------- 114
+ G+ V C + + W++
Sbjct: 15 SQVVQVNDSMYGFIGTDVVLHCSFANPLPSVKITQVTWQKSTNGSKQNVAIYNPSMGVSV 74
Query: 115 -----GRAKILDDR----SLQIENVGPQDEGLYICDVENL-VGSISLRASLTVHLLRDDF 164
R + L ++++ + +DEG+YIC+ G+ + +LTV ++
Sbjct: 75 LAPYRERVEFLRPSFTDGTIRLSRLELEDEGVYICEFATFPTGNRESQLNLTVMAKPTNW 134
Query: 165 RAEPKDT----RVASGETALLECGPPKGQPEPTLHWKKNGQFIDLESS-KSLDLSRRTLG 219
+ + + + C G+P + W+ + ++ + + +
Sbjct: 135 IEGTQAVLRAKKGQDDKVLVATCTSANGKPPSVVSWETRLKGEAEYQEIRNPNGTVTVIS 194
Query: 220 WLRVRPLYWNVARP---RANLNPRYIGRKMASLLIWNHPRVN---------------RLS 261
R+ P + N ++ +L + P V +L+
Sbjct: 195 RYRLVPSREAHQQSLACIVN-YHMDRFKESLTLNVQYEPEVTIEGFDGNWYLQRMDVKLT 253
Query: 262 CFAEGSPLPS-VFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSV 320
C A+ +P + WT + + + AG ++C A +
Sbjct: 254 CKADANPPATEYHWTTLNGSLP-------KGVEAQNRTLFFKGPINYSLAGTYICEATNP 306
Query: 321 AGSTTVRAFLQVRE 334
G+ + + + + E
Sbjct: 307 IGTRSGQVEVNITE 320
Score = 66.3 bits (161), Expect = 6e-12
Identities = 36/303 (11%), Positives = 63/303 (20%), Gaps = 76/303 (25%)
Query: 168 PKDTRVASGETALLEC---GPPKGQPEPTLHWKKNGQFIDLES---SKSLDLSRRTLGWL 221
G +L C P + W+K+ + S+ +S
Sbjct: 21 NDSMYGFIGTDVVLHCSFANPLPSVKITQVTWQKSTNGSKQNVAIYNPSMGVSVLAPYRE 80
Query: 222 RVRPLY----------WNVARP-------RANLNPRYIGRKMASLLIWNHPRVNR----- 259
RV L + P +L + P
Sbjct: 81 RVEFLRPSFTDGTIRLSRLELEDEGVYICEFATFPTGNRESQLNLTVMAKPTNWIEGTQA 140
Query: 260 --------------LSCF-AEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQG 304
+C A G P V W + + VT R+
Sbjct: 141 VLRAKKGQDDKVLVATCTSANGKPPSVVSWETRLKGEAEYQEIRNPNGTVTVISRYRLVP 200
Query: 305 VQKEDAGFFVCSALSVAGSTTVRAFLQVR---EFCVLPKGTFTL-------------GQP 348
++ C L V+ E + P
Sbjct: 201 SREAHQQSLACIVNYHMDRFKESLTLNVQYEPEVTIEGFDGNWYLQRMDVKLTCKADANP 260
Query: 349 ----------------NLATGNSDLRRIACDLRETDSGLYTCTASSESGETSWSASLSVE 392
+ N L + + +G Y C A++ G S +++
Sbjct: 261 PATEYHWTTLNGSLPKGVEAQNRTLFFKG-PINYSLAGTYICEATNPIGTRSGQVEVNIT 319
Query: 393 PRP 395
Sbjct: 320 EAA 322
Score = 65.5 bits (159), Expect = 1e-11
Identities = 19/146 (13%), Positives = 32/146 (21%), Gaps = 14/146 (9%)
Query: 69 LIKPFPISEPSDATV-----LSGSVVEFVCRV-GGDPLPTILWRRDDGKMPTGRAKILDD 122
+ KP E + A + V+ C G P + W + +
Sbjct: 128 MAKPTNWIEGTQAVLRAKKGQDDKVLVATCTSANGKPPSVVSWETRLKGEAEYQEIRNPN 187
Query: 123 R------SLQIENVGPQDEGLYICDVENLVGSISLRASLTVHLLRDDFRAEPKDTRVASG 176
++ + C V + +L V +
Sbjct: 188 GTVTVISRYRLVPSREAHQQSLACIVNYHMDRFKESLTLNVQYEPEVTIEGFDGNWYLQR 247
Query: 177 ETALLECGPPKGQPEPT-LHWKKNGQ 201
L C P T HW
Sbjct: 248 MDVKLTC-KADANPPATEYHWTTLNG 272
Score = 34.0 bits (77), Expect = 0.12
Identities = 12/133 (9%), Positives = 25/133 (18%), Gaps = 14/133 (10%)
Query: 363 DLRETDSGLYTCTASSESGETSW-SASLSVEPRPGPHAVHRMPDSGLFPGPPAAPVILNT 421
L D G+Y C ++ +L+V +P +
Sbjct: 98 RLELEDEGVYICEFATFPTGNRESQLNLTVMAKPTNW---------IEGTQAVLRAKKGQ 148
Query: 422 TRGSVTLGWGEPEPRGGGVAPVIGYTVEYFSSDLQTGWVVAAHRITSTS-ITVSDLKPDT 480
+ G V+ + +T S + +
Sbjct: 149 DDKVLVA---TCTSANGKPPSVVSWETRLKGEAEYQEIRNPNGTVTVISRYRLVPSREAH 205
Query: 481 SYMFIVRAENSHG 493
Sbjct: 206 QQSLACIVNYHMD 218
>2haz_A N-CAM 1, neural cell adhesion molecule 1; fibronectin type III
repeat, FN1, beta sandwich; 1.70A {Homo sapiens} SCOP:
b.1.2.1
Length = 105
Score = 95.1 bits (237), Expect = 9e-24
Identities = 25/98 (25%), Positives = 39/98 (39%), Gaps = 6/98 (6%)
Query: 410 PGPPAAPVILNTTRGSVTLGWGEPEPRGGGVAPVIGYTVEY---FSSDLQTGWVVAAHRI 466
P P+ + + + + EPE GG P++ Y E+ + W A
Sbjct: 7 PSSPSIDQV-EPYSSTAQVQFDEPEATGG--VPILKYKAEWRAVGEEVWHSKWYDAKEAS 63
Query: 467 TSTSITVSDLKPDTSYMFIVRAENSHGLGIPSPVSPIT 504
+T+ LKP+T+Y + A N GLG S S
Sbjct: 64 MEGIVTIVGLKPETTYAVRLAALNGKGLGEISAASEFK 101
Score = 29.3 bits (66), Expect = 1.4
Identities = 6/32 (18%), Positives = 9/32 (28%), Gaps = 1/32 (3%)
Query: 587 TWEKYNMATVMNAATTTSYTVTHLRKFTKYEF 618
W A+ T+ L+ T Y
Sbjct: 51 VWHSKWY-DAKEASMEGIVTIVGLKPETTYAV 81
>3irg_B Obscurin-like protein 1; IG-like, titin, OBSL1, complex,
alternative splicing, ATP-binding, calcium,
calmodulin-binding, cardiomyopathy; 1.30A {Homo sapiens}
PDB: 3knb_B 2wp3_O* 2wwm_C 2wwk_O
Length = 107
Score = 94.8 bits (236), Expect = 1e-23
Identities = 26/101 (25%), Positives = 43/101 (42%), Gaps = 4/101 (3%)
Query: 62 KLIAKEALIKPFPISEPSDATVLSGSVVEFVCRVGGDPLPTILWRRDDGKM-PTGRAKIL 120
K + + P + P V+SG+ E C V G+P P ++W + ++ + R
Sbjct: 4 KASSGDQGSPPCFLRFPRPVRVVSGAEAELKCVVLGEPPPVVVWEKGGQQLAASERLSFP 63
Query: 121 DD---RSLQIENVGPQDEGLYICDVENLVGSISLRASLTVH 158
D L + P D G+Y+C N G A++TV
Sbjct: 64 ADGAEHGLLLTAALPTDAGVYVCRARNAAGEAYAAAAVTVL 104
Score = 64.3 bits (157), Expect = 6e-13
Identities = 24/79 (30%), Positives = 31/79 (39%), Gaps = 8/79 (10%)
Query: 259 RLSCFAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEG---TLRIQGVQKEDAGFFVC 315
L C G P P V W + G Q+ A L +G L + DAG +VC
Sbjct: 32 ELKCVVLGEPPPVVVWEKGGQQL-----AASERLSFPADGAEHGLLLTAALPTDAGVYVC 86
Query: 316 SALSVAGSTTVRAFLQVRE 334
A + AG A + V E
Sbjct: 87 RARNAAGEAYAAAAVTVLE 105
Score = 45.1 bits (107), Expect = 3e-06
Identities = 16/40 (40%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
Query: 164 FRAEPKDTRVASGETALLECGPPKGQPEPTLHWKKNGQFI 203
F P+ RV SG A L+C G+P P + W+K GQ +
Sbjct: 16 FLRFPRPVRVVSGAEAELKC-VVLGEPPPVVVWEKGGQQL 54
Score = 42.4 bits (100), Expect = 3e-05
Identities = 11/33 (33%), Positives = 19/33 (57%)
Query: 363 DLRETDSGLYTCTASSESGETSWSASLSVEPRP 395
TD+G+Y C A + +GE +A+++V P
Sbjct: 75 AALPTDAGVYVCRARNAAGEAYAAAAVTVLEPP 107
>1wis_A KIAA1514 protein; FNIII domain, sidekick-2, structural genomics,
riken structural genomics/proteomics initiative, RSGI,
unknown function; NMR {Homo sapiens} SCOP: b.1.2.1
Length = 124
Score = 94.7 bits (236), Expect = 2e-23
Identities = 35/132 (26%), Positives = 48/132 (36%), Gaps = 20/132 (15%)
Query: 381 GETSWSASLSVEPRPGPHAVHRMPDSGLFPGPPAAPVILNTTRGSVTLGWGEPEPRGGGV 440
G + S ++S P PGPP I N SVTL + P G
Sbjct: 1 GSSGSSGTISSGVPPEL------------PGPPTNLGISNIGPRSVTLQF---RPGYDGK 45
Query: 441 APVIGYTVEYFSSDLQTG-----WVVAAHRITSTSITVSDLKPDTSYMFIVRAENSHGLG 495
+ + VE + G ++ + S+ V DL P T Y F +R N G
Sbjct: 46 TSISRWLVEAQVGVVGEGEEWLLIHQLSNEPDARSMEVPDLNPFTCYSFRMRQVNIVGTS 105
Query: 496 IPSPVSPITRTL 507
PS S +TL
Sbjct: 106 PPSQPSRKIQTL 117
Score = 29.2 bits (66), Expect = 1.6
Identities = 9/32 (28%), Positives = 11/32 (34%), Gaps = 2/32 (6%)
Query: 587 TWEKYNMATVMNAATTTSYTVTHLRKFTKYEF 618
W + + N S V L FT Y F
Sbjct: 65 EWLLIH--QLSNEPDARSMEVPDLNPFTCYSF 94
>2kkq_A Myotilin; unknown function, actin-binding, cell membrane,
cytoplasm, cytoskeleton, disease mutation,
immunoglobulin domain; NMR {Homo sapiens}
Length = 116
Score = 94.0 bits (234), Expect = 3e-23
Identities = 26/100 (26%), Positives = 42/100 (42%), Gaps = 6/100 (6%)
Query: 65 AKEALIKPFPISEPSDATVLSGSVVEFVCRVGGDPLPTILWRRDDG--KMPTGRAKILDD 122
+ E P I +P VL G V+ C++ P P + W+R++ + T R + D
Sbjct: 9 SHEHKRAPMFIYKPQSKKVLEGDSVKLECQISAIPPPKLFWKRNNEMVQFNTDRISLYQD 68
Query: 123 R----SLQIENVGPQDEGLYICDVENLVGSISLRASLTVH 158
+L I++V +D G Y N G + L V
Sbjct: 69 NTGRVTLLIKDVNKKDAGWYTVSAVNEAGVTTCNTRLDVT 108
Score = 65.1 bits (159), Expect = 4e-13
Identities = 24/80 (30%), Positives = 40/80 (50%), Gaps = 8/80 (10%)
Query: 259 RLSCFAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEG----TLRIQGVQKEDAGFFV 314
+L C P P +FW + +++ F + + + Q+ TL I+ V K+DAG++
Sbjct: 34 KLECQISAIPPPKLFWKRNN-EMVQFNTD---RISLYQDNTGRVTLLIKDVNKKDAGWYT 89
Query: 315 CSALSVAGSTTVRAFLQVRE 334
SA++ AG TT L V
Sbjct: 90 VSAVNEAGVTTCNTRLDVTA 109
Score = 52.8 bits (127), Expect = 1e-08
Identities = 15/64 (23%), Positives = 26/64 (40%), Gaps = 2/64 (3%)
Query: 146 VGSISLRASLTVHLLRDDFRAEPKDTRVASGETALLECGPPKGQPEPTLHWKKNGQFIDL 205
+G S F +P+ +V G++ LEC P P L WK+N + +
Sbjct: 1 MGHHHHHHSHEHKR-APMFIYKPQSKKVLEGDSVKLEC-QISAIPPPKLFWKRNNEMVQF 58
Query: 206 ESSK 209
+ +
Sbjct: 59 NTDR 62
>1fhg_A Telokin; immunoglobulin fold, beta barrel, contractIle protein;
2.00A {Meleagris gallopavo} SCOP: b.1.1.4 PDB: 1tlk_A
Length = 154
Score = 95.3 bits (237), Expect = 4e-23
Identities = 31/113 (27%), Positives = 47/113 (41%), Gaps = 5/113 (4%)
Query: 70 IKPFPISEPSDATVLSGSVVEFVCRVGGDPLPTILWRRDDGKM-PTGRAKILDDR----S 124
+KP+ D V+ GS F C+V G P P ++W +DD + + +I D S
Sbjct: 40 VKPYFTKTILDMEVVEGSAARFDCKVEGYPDPEVMWFKDDNPVKESRHFQIDYDEEGNCS 99
Query: 125 LQIENVGPQDEGLYICDVENLVGSISLRASLTVHLLRDDFRAEPKDTRVASGE 177
L I V D+ Y C N +G + A L V + + E + E
Sbjct: 100 LTISEVCGDDDAKYTCKAVNSLGEATCTAELLVETMGKEGEGEGEGEEDEEEE 152
Score = 61.0 bits (148), Expect = 3e-11
Identities = 21/80 (26%), Positives = 31/80 (38%), Gaps = 9/80 (11%)
Query: 259 RLSCFAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEG----TLRIQGVQKEDAGFFV 314
R C EG P P V W ++ + V H + + +L I V +D +
Sbjct: 60 RFDCKVEGYPDPEVMWFKDDNPV-----KESRHFQIDYDEEGNCSLTISEVCGDDDAKYT 114
Query: 315 CSALSVAGSTTVRAFLQVRE 334
C A++ G T A L V
Sbjct: 115 CKAVNSLGEATCTAELLVET 134
Score = 47.9 bits (114), Expect = 1e-06
Identities = 13/80 (16%), Positives = 21/80 (26%), Gaps = 4/80 (5%)
Query: 127 IENVGPQDEGLYICDVENLVGSISLRASLTVHLLRD---DFRAEPKDTRVASGETALLEC 183
+ N V + F D V G A +C
Sbjct: 4 MSGRKASGSSPTSPINANKVENEDAFLEEVAEEKPHVKPYFTKTILDMEVVEGSAARFDC 63
Query: 184 GPPKGQPEPTLHWKKNGQFI 203
+G P+P + W K+ +
Sbjct: 64 -KVEGYPDPEVMWFKDDNPV 82
Score = 42.9 bits (101), Expect = 5e-05
Identities = 11/33 (33%), Positives = 16/33 (48%)
Query: 363 DLRETDSGLYTCTASSESGETSWSASLSVEPRP 395
++ D YTC A + GE + +A L VE
Sbjct: 104 EVCGDDDAKYTCKAVNSLGEATCTAELLVETMG 136
>2crz_A Fibronectin type-III domain containing protein 3A; structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
b.1.2.1
Length = 110
Score = 93.6 bits (233), Expect = 4e-23
Identities = 31/100 (31%), Positives = 44/100 (44%), Gaps = 5/100 (5%)
Query: 410 PGPPAAPVILNTTRG-SVTLGWGEPEPRGGGVAPVIGYTVEYFSSDLQTGWVVAAHRITS 468
PGP P + + + L WG P GG +P+ Y+VE S ++ ++ +
Sbjct: 9 PGPCLPPRLQGRPKAKEIQLRWGPPLVDGG--SPISCYSVEM--SPIEKDEPREVYQGSE 64
Query: 469 TSITVSDLKPDTSYMFIVRAENSHGLGIPSPVSPITRTLG 508
TVS L P +Y F +RA N G G S IT G
Sbjct: 65 VECTVSSLLPGKTYSFRLRAANKMGFGPFSEKCDITTAPG 104
>1x3d_A Fibronectin type-III domain containing protein 3A; structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
b.1.2.1
Length = 118
Score = 93.2 bits (232), Expect = 6e-23
Identities = 20/97 (20%), Positives = 34/97 (35%), Gaps = 4/97 (4%)
Query: 410 PGPPAAPVILNTTRGSVTLGWGEPEPRGGGVAPVIGYTVEYFSSDLQTGWVVAAHRITST 469
P P P I N T+ S+TL W P G + + + +E+ + +
Sbjct: 18 PDIPNPPRIANRTKNSLTLQWKAPSDNG---SKIQNFVLEWDEGKGNGEFCQCY-MGSQK 73
Query: 470 SITVSDLKPDTSYMFIVRAENSHGLGIPSPVSPITRT 506
++ L P F + A N +G S +
Sbjct: 74 QFKITKLSPAMGCKFRLSARNDYGTSGFSEEVLYYTS 110
Score = 27.7 bits (62), Expect = 4.8
Identities = 3/18 (16%), Positives = 7/18 (38%)
Query: 601 TTTSYTVTHLRKFTKYEF 618
+ + +T L +F
Sbjct: 71 SQKQFKITKLSPAMGCKF 88
>2o26_X MAST/stem cell growth factor receptor; stem cell factor, receptor
tyrosine kinase, class III, recep ligand complex,
cytokine, 4-helix bundle; HET: NAG FUL MAN NDG; 2.50A
{Mus musculus}
Length = 290
Score = 97.9 bits (243), Expect = 8e-23
Identities = 41/289 (14%), Positives = 76/289 (26%), Gaps = 37/289 (12%)
Query: 71 KPFPISEPSDATVLSGSVVEFVCRVGGDPLPTILWRRDDGKMPTGRAKILDDRSLQIENV 130
P S+ V +G + C + W E
Sbjct: 12 PPSIHPAQSELIVEAGDTLSLTCIDPD----FVRWTFKT---YFNEMVENKKNEWIQEKA 64
Query: 131 GPQDEGLYICDVENLVGSISLRASLTVHLLRDDFRAEPKDTRVASGETALLECGPPKGQP 190
G Y C N + S + V F AL+ C P
Sbjct: 65 EATRTGTYTCSNSNGLTS---SIYVFVRDPAKLFL-VGLPLFGKEDSDALVRC-PLTDPQ 119
Query: 191 EPTLHWKK-NGQFIDLESSKSLDLSRRTLGWLRVRPLYWNVARPRANLNPRYIGRKMASL 249
+ +G+ + + + + R + R A + ++ +L
Sbjct: 120 VSQYSLIECDGKSLPTDLTFVPNPKAGITIKNVKRAYHRLCVRCAAQRDGTWLHSDKFTL 179
Query: 250 LIWNHPRVN------------------RLSCFAEGSPLP-SVFWTQEGSQVLMFPGNAY- 289
+ + + C + + W + Q +
Sbjct: 180 KVREAIKAIPVVSVPETSHLLKKGDTFTVVCTIKDVSTSVNSMWLKMNPQPQHIAQVKHN 239
Query: 290 ----GHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVRE 334
G + ++ TL I + +D+G F+C A + GS V L+V E
Sbjct: 240 SWHRGDFNYERQETLTISSARVDDSGVFMCYANNTFGSANVTTTLKVVE 288
Score = 55.9 bits (134), Expect = 1e-08
Identities = 22/181 (12%), Positives = 42/181 (23%), Gaps = 54/181 (29%)
Query: 260 LSCFAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQK-EDAGFFVCSAL 318
+ C + + + L + + I+ V++ C+A
Sbjct: 111 VRCPLTDPQVSQYSLIECDGKSLPTDLT----FVPNPKAGITIKNVKRAYHRLCVRCAAQ 166
Query: 319 SVAGSTTVRAF-LQVREFCVLPKGTFTLGQPNLATGNSDLRRIAC--------------- 362
F L+VRE +L + C
Sbjct: 167 RDGTWLHSDKFTLKVREAIKAIPVVSVPETSHLLKKGDTF-TVVCTIKDVSTSVNSMWLK 225
Query: 363 --------------------------------DLRETDSGLYTCTASSESGETSWSASLS 390
R DSG++ C A++ G + + +L
Sbjct: 226 MNPQPQHIAQVKHNSWHRGDFNYERQETLTISSARVDDSGVFMCYANNTFGSANVTTTLK 285
Query: 391 V 391
V
Sbjct: 286 V 286
Score = 37.4 bits (86), Expect = 0.011
Identities = 21/170 (12%), Positives = 36/170 (21%), Gaps = 48/170 (28%)
Query: 259 RLSCFAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSAL 318
L+C V WT + + ++ + + G + CS
Sbjct: 31 SLTCIDPDF----VRWTFKTYF---------NEMVENKKNEWIQEKAEATRTGTYTCSNS 77
Query: 319 SVAGSTT-------VRAFLQVREFCVLPKGTFTLGQPNLATGN----------------S 355
+ S+ + FL + T +
Sbjct: 78 NGLTSSIYVFVRDPAKLFLVGLPLFGKEDSDALV--RCPLTDPQVSQYSLIECDGKSLPT 135
Query: 356 DLR---------RIACDLRETDSGLYTCTASSESGE-TSWSASLSVEPRP 395
DL I R C A + S +L V
Sbjct: 136 DLTFVPNPKAGITIKNVKRAYHRLCVRCAAQRDGTWLHSDKFTLKVREAI 185
Score = 29.3 bits (65), Expect = 4.1
Identities = 13/68 (19%), Positives = 21/68 (30%), Gaps = 12/68 (17%)
Query: 367 TDSGLYTCTASSESGETSW-----SASLSVEPRPGPHAVHRMPDSGLFP----GPPAAPV 417
T +G YTC+ S+ + + A L + P + L P +
Sbjct: 67 TRTGTYTCSNSNGLTSSIYVFVRDPAKLFLVGLP---LFGKEDSDALVRCPLTDPQVSQY 123
Query: 418 ILNTTRGS 425
L G
Sbjct: 124 SLIECDGK 131
>3kvq_A Vascular endothelial growth factor receptor 2; vegfr2,
angiogenesis, ATP-binding, developmental protein,
differentiation, glycoprotein; 2.70A {Homo sapiens}
Length = 108
Score = 92.4 bits (230), Expect = 1e-22
Identities = 24/94 (25%), Positives = 40/94 (42%), Gaps = 2/94 (2%)
Query: 67 EALIKPFPISEPSDATVLSGSVVEFVCRVGGDPLPTILWRRDDGKM-PTGRAKILDD-RS 124
+ P + T G +E C G+P P I+W +D+ + + D R+
Sbjct: 6 LERVAPTITGNLENQTTSIGESIEVSCTASGNPPPQIMWFKDNETLVEDSGIVLKDGNRN 65
Query: 125 LQIENVGPQDEGLYICDVENLVGSISLRASLTVH 158
L I V +DEGLY C +++G + A +
Sbjct: 66 LTIRRVRKEDEGLYTCQACSVLGCAKVEAFFIIE 99
Score = 70.1 bits (172), Expect = 7e-15
Identities = 22/77 (28%), Positives = 35/77 (45%), Gaps = 6/77 (7%)
Query: 259 RLSCFAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEG-TLRIQGVQKEDAGFFVCSA 317
+SC A G+P P + W ++ ++ + + L I+ V+KED G + C A
Sbjct: 29 EVSCTASGNPPPQIMWFKDNETLV-----EDSGIVLKDGNRNLTIRRVRKEDEGLYTCQA 83
Query: 318 LSVAGSTTVRAFLQVRE 334
SV G V AF +
Sbjct: 84 CSVLGCAKVEAFFIIEG 100
Score = 47.3 bits (113), Expect = 6e-07
Identities = 15/62 (24%), Positives = 25/62 (40%), Gaps = 1/62 (1%)
Query: 164 FRAEPKDTRVASGETALLECGPPKGQPEPTLHWKKNGQFIDLESSKSLDLSRRTLGWLRV 223
++ + GE+ + C G P P + W K+ + + +S L R L RV
Sbjct: 13 ITGNLENQTTSIGESIEVSC-TASGNPPPQIMWFKDNETLVEDSGIVLKDGNRNLTIRRV 71
Query: 224 RP 225
R
Sbjct: 72 RK 73
Score = 46.6 bits (111), Expect = 1e-06
Identities = 12/33 (36%), Positives = 15/33 (45%)
Query: 363 DLRETDSGLYTCTASSESGETSWSASLSVEPRP 395
+R+ D GLYTC A S G A +E
Sbjct: 70 RVRKEDEGLYTCQACSVLGCAKVEAFFIIEGAQ 102
>2ed7_A Netrin receptor DCC; tumor suppressor protein DCC, colorectal
cancer suppressor, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 119
Score = 92.5 bits (230), Expect = 1e-22
Identities = 26/112 (23%), Positives = 38/112 (33%), Gaps = 6/112 (5%)
Query: 393 PRPGPHAVHRMPDSGLFPGPPAAPVILNTTRGSVTLGWGEPEPRGGGVAPVIGYTVEYFS 452
G A+ P P V + + V L W P G + +TV +
Sbjct: 4 GSSGKPAIPSSSV---LPSAPRDVVPVLVSSRFVRLSWRPPAEAKG---NIQTFTVFFSR 57
Query: 453 SDLQTGWVVAAHRITSTSITVSDLKPDTSYMFIVRAENSHGLGIPSPVSPIT 504
+ + S +TV +LKP+ Y F V A N G G S +
Sbjct: 58 EGDNRERALNTTQPGSLQLTVGNLKPEAMYTFRVVAYNEWGPGESSQPIKVA 109
>2vkw_A Neural cell adhesion molecule 1,140 kDa isoform; adhesion receptor;
2.3A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 PDB: 2vkx_A
1lwr_A
Length = 209
Score = 95.3 bits (237), Expect = 2e-22
Identities = 36/216 (16%), Positives = 62/216 (28%), Gaps = 48/216 (22%)
Query: 410 PGPPAAP--VILNTTRGSVTLGWGEPEPRGGGVAPVIGYTVEY---FSSDLQTGWVVAAH 464
P++P + + + + EPE GG P++ Y E+ + W A
Sbjct: 6 ADTPSSPSIDQVEPYSSTAQVQFDEPEATGG--VPILKYKAEWRAVGEEVWHSKWYDAKE 63
Query: 465 RITSTSITVSDLKPDTSYMFIVRAENSHGLGIPSPVSPITRTLGLNSLVPQHLLDEARAR 524
+T+ LKP+T+Y + A N GLG S S P+
Sbjct: 64 ASMEGIVTIVGLKPETTYAVRLAALNGKGLGEISAASEFKTQPVREPSAPKLE------- 116
Query: 525 LGTKVVNLRELIPTASTAVRITWEV--SWGSVPQHLLDEARARLGTKVVNLRELIPTAST 582
+ ++++ GS +H L RA
Sbjct: 117 ---------GQMGEDGNSIKVNLIKQDDGGSPIRHYLVRYRALSS--------------- 152
Query: 583 AVRITWEKYNMATVMNAATTTSYTVTHLRKFTKYEF 618
W+ + + L +YE
Sbjct: 153 ----EWKPEIRLPS----GSDHVMLKSLDWNAEYEV 180
Score = 84.5 bits (209), Expect = 8e-19
Identities = 24/131 (18%), Positives = 38/131 (29%), Gaps = 17/131 (12%)
Query: 375 TASSESGETSWSASLSVEPRPGPHAVHRMPDSGLFPGPPAAPVILNTTRGSVTLGWGEPE 434
A + G SA+ + P P P + S+ + + +
Sbjct: 86 AALNGKGLGEISAASEF--KTQPVRE---------PSAPKLEGQMGEDGNSIKVNLIKQD 134
Query: 435 PRGGGVAPVIGYTVEYFSSDLQTGWVVAAHR-ITSTSITVSDLKPDTSYMFIVRAENSHG 493
G P+ Y V Y L + W S + + L + Y V AEN G
Sbjct: 135 DGGS---PIRHYLVRY--RALSSEWKPEIRLPSGSDHVMLKSLDWNAEYEVYVVAENQQG 189
Query: 494 LGIPSPVSPIT 504
+ T
Sbjct: 190 KSKAAHFVFRT 200
>1gl4_B Basement membrane-specific heparan sulfate proteoglycan core
protein; immunoglobulin-like domain, extracellular
matrix; HET: EPE; 2.0A {Mus musculus} SCOP: b.1.1.4
Length = 98
Score = 91.4 bits (227), Expect = 2e-22
Identities = 25/88 (28%), Positives = 36/88 (40%), Gaps = 2/88 (2%)
Query: 72 PFPISEPSDATVLSGSVVEFVCRV-GGDPLPTILWRRDDGKMPTGRAKILDDRSLQIENV 130
+ E +V G+ V F+C P T++W R RA + + L I NV
Sbjct: 11 MVTVEEQRSQSVRPGADVTFICTAKSKSPAYTLVWTRLHNGKLPSRA-MDFNGILTIRNV 69
Query: 131 GPQDEGLYICDVENLVGSISLRASLTVH 158
P D G Y+C N+ A+L V
Sbjct: 70 QPSDAGTYVCTGSNMFAMDQGTATLHVQ 97
Score = 62.9 bits (153), Expect = 2e-12
Identities = 21/76 (27%), Positives = 33/76 (43%), Gaps = 8/76 (10%)
Query: 259 RLSCFAE-GSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSA 317
C A+ SP ++ WT+ + L P + G L I+ VQ DAG +VC+
Sbjct: 29 TFICTAKSKSPAYTLVWTRLHNGKL--PSR-----AMDFNGILTIRNVQPSDAGTYVCTG 81
Query: 318 LSVAGSTTVRAFLQVR 333
++ A L V+
Sbjct: 82 SNMFAMDQGTATLHVQ 97
Score = 41.3 bits (97), Expect = 5e-05
Identities = 8/37 (21%), Positives = 10/37 (27%)
Query: 167 EPKDTRVASGETALLECGPPKGQPEPTLHWKKNGQFI 203
E + V G C P TL W +
Sbjct: 16 EQRSQSVRPGADVTFICTAKSKSPAYTLVWTRLHNGK 52
Score = 38.6 bits (90), Expect = 5e-04
Identities = 9/30 (30%), Positives = 18/30 (60%)
Query: 363 DLRETDSGLYTCTASSESGETSWSASLSVE 392
+++ +D+G Y CT S+ +A+L V+
Sbjct: 68 NVQPSDAGTYVCTGSNMFAMDQGTATLHVQ 97
>1z7z_I Intercellular adhesion molecule-1; ICAM-1,kilifi,CD54,human
coxsackievirus A21, cryo-electron
microscopy,virus-receptor complex, icosahedral virus;
HET: NAG NDG; 8.00A {Homo sapiens} SCOP: b.1.1.3 b.1.1.3
b.1.1.4 b.1.1.4 b.1.1.4
Length = 450
Score = 99.6 bits (247), Expect = 2e-22
Identities = 49/377 (12%), Positives = 93/377 (24%), Gaps = 71/377 (18%)
Query: 72 PFPISEPSDATVLSGSVVEFVCRV-GGDPLP--TILWRRDDGKMPTGRAKILDDRS-LQI 127
P + G + C+V GG P T++ R + ++ A +
Sbjct: 87 ERVELAPLPSWQPVGKNLTLRCQVEGGAPRANLTVVLLRGEKELKREPAVGEPAEVTTTV 146
Query: 128 ENVGPQDEGLYICDVENLVGS--------ISLRASLTVHLLRDDFRAEPKDTRVASGETA 179
+ C E + S L +L +
Sbjct: 147 LVRRDHHGANFSCRTELDLRPQGLELFENTSAPYQLQTFVLPATPPQLVSPRVLEVDTQG 206
Query: 180 LLECGPPKGQP--EPTLHWKKNGQFIDLESSKSLDLSRRTLGWLRVRPLYWNVARPRA-N 236
+ C P E +H Q ++ + D S + V R
Sbjct: 207 TVVCSLDGLFPVSEAQVHLALGDQRLNPTVTYGND-SFSAKASVSVTAEDEGTQRLTCAV 265
Query: 237 LNPRYIGRKMASLLIWNHPRVN--------------RLSCFAEGSPLPSVFWTQEGSQVL 282
+ + ++ I++ P N + C A ++
Sbjct: 266 ILGNQSQETLQTVTIYSFPAPNVILTKPEVSEGTEVTVKCEAHPRAKVTLNGVPAQP--- 322
Query: 283 MFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSA-LSVAGSTTVRAFLQVREFCVLPKG 341
+ L ++ +++ F CSA L VAG + + P+
Sbjct: 323 -----------LGPRAQLLLKATPEDNGRSFSCSATLEVAGQLIHKNQTRELRVLYGPRL 371
Query: 342 TFTLGQPNLATGNSDLRRIACD--------------------------LRETDSGLYTCT 375
N + + C + G Y C
Sbjct: 372 DERDCPGNWTWPENSQQTPMCQAWGNPLPELKCLKDGTFPLPIGESVTVTRDLEGTYLCR 431
Query: 376 ASSESGETSWSASLSVE 392
A S GE + +++V
Sbjct: 432 ARSTQGEVTREVTVNVL 448
Score = 97.2 bits (241), Expect = 1e-21
Identities = 53/393 (13%), Positives = 103/393 (26%), Gaps = 64/393 (16%)
Query: 77 EPSDATVLSGSVVEFVCRVGGDPLPTILWRRDDGKMPTGRAKILDDRSLQIENVGPQDEG 136
PS + G V C D + +P + + E Q++
Sbjct: 5 SPSKVILPRGGSVLVTCSTSCDQPMLLGIET---PLPKKELLLPGNNRKVYELSNVQEDS 61
Query: 137 LYICDVENLVGSISLRASLTVHLLRDDFRAEPKDTRVASGETALLECGPPKGQPEP--TL 194
+C G + + LTV+ + P + G+ L C G P T+
Sbjct: 62 QPMCYSNCPDGQSTAKTFLTVYWTPERVELAPLPSWQPVGKNLTLRCQVEGGAPRANLTV 121
Query: 195 HWKKNGQFIDLESSKSLDL--------SRRTLG-------WLRVRPLYWNVARPRANLNP 239
+ + + E + R G L +RP + +
Sbjct: 122 VLLRGEKELKREPAVGEPAEVTTTVLVRRDHHGANFSCRTELDLRPQGLELFENTSAPYQ 181
Query: 240 RYIGRKMASLLIWNHPRVNR------LSCFAEGS-PLPSVFWTQEGSQVLMFPGNAYGHL 292
A+ PRV + C +G P+ + P YG+
Sbjct: 182 LQTFVLPATPPQLVSPRVLEVDTQGTVVCSLDGLFPVSEAQVHLALGDQRLNPTVTYGND 241
Query: 293 HVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVREFCVLPKGTFTLGQPNLAT 352
+ + ++ + + E C+ + S + + F P L +P ++
Sbjct: 242 SFSAKASVSVT-AEDEGTQRLTCAVILGNQSQETLQTVTIYSF---PAPNVILTKPEVSE 297
Query: 353 GNSDLRRIACD---------------------------LRETDSGLYTCTASSESGETSW 385
G + C+ E + ++C+A+ E
Sbjct: 298 GTE--VTVKCEAHPRAKVTLNGVPAQPLGPRAQLLLKATPEDNGRSFSCSATLEVAGQLI 355
Query: 386 ----SASLSVEPRPGPHAVHRMPDSGLFPGPPA 414
+ L V P +
Sbjct: 356 HKNQTRELRVLYGPRLDERDCPGNWTWPENSQQ 388
Score = 86.5 bits (213), Expect = 4e-18
Identities = 43/285 (15%), Positives = 76/285 (26%), Gaps = 46/285 (16%)
Query: 72 PFPISEPSDATVLSGSVVEFVCRVGGD---PLPTILWRRDDGKM-PTGRAKILDDRSLQI 127
P S + + VC + G + D ++ PT +
Sbjct: 189 ATPPQLVSPRVLEVDTQGTVVCSLDGLFPVSEAQVHLALGDQRLNPTVTYGNDSFSAKAS 248
Query: 128 ENVGPQDEGLY--ICDVENLVGSISLRASLTVHLLRDDFRAEPKDTRVASGETALLECGP 185
+V +DEG C V S ++T++ V+ G ++C
Sbjct: 249 VSVTAEDEGTQRLTCAVILGNQSQETLQTVTIYS-FPAPNVILTKPEVSEGTEVTVKC-- 305
Query: 186 PKGQPEPTLHWKKNGQFIDLESSK-SLDLSRRTLG---------------WLRVRPLYWN 229
+ P + ++ L + G + +
Sbjct: 306 -EAHPRAKVTLNGVPAQPLGPRAQLLLKATPEDNGRSFSCSATLEVAGQLIHKNQTRELR 364
Query: 230 VARPRANLNPRYIGRKMASLLIWNHPRVNRLSCFAEGSPLPSVFWTQEGSQVLMFPGNAY 289
V PR R W C A G+PLP + ++G+ L
Sbjct: 365 VLYG-----PRLDERDCPGNWTWPENSQQTPMCQAWGNPLPELKCLKDGTFPLP------ 413
Query: 290 GHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVRE 334
V ++ G ++C A S G T + V
Sbjct: 414 ---------IGESVTVTRDLEGTYLCRARSTQGEVTREVTVNVLS 449
Score = 64.1 bits (155), Expect = 6e-11
Identities = 18/89 (20%), Positives = 33/89 (37%), Gaps = 11/89 (12%)
Query: 71 KPFPISEPSDATVLSGSVVEFVCRVGGDPLPTILWRRDDGK-MPTGRAKILDDRSLQIEN 129
+ P + T S +C+ G+PLP + +D +P G +
Sbjct: 370 RLDERDCPGNWTWPENSQQTPMCQAWGNPLPELKCLKDGTFPLPIG----------ESVT 419
Query: 130 VGPQDEGLYICDVENLVGSISLRASLTVH 158
V EG Y+C + G ++ ++ V
Sbjct: 420 VTRDLEGTYLCRARSTQGEVTREVTVNVL 448
>3shs_A HOC head outer capsid protein; immunoglobulin-like domain, phage
capsid decorative protein, interaction with bacteria;
1.95A {Enterobacteria phage RB49}
Length = 304
Score = 96.0 bits (238), Expect = 5e-22
Identities = 53/316 (16%), Positives = 100/316 (31%), Gaps = 63/316 (19%)
Query: 70 IKPFPISEPSDATVLSGSVVEFVCRV-GGDPLP---TILWRRDDGKMPTGRAKILDDRSL 125
+ + + L+G V G +PLP T W +DD A +L
Sbjct: 1 MAFTVSIQSNKRCFLAGDGFTLTATVAGDEPLPSNLTYTWTKDDQPHENNTA------TL 54
Query: 126 QIENVGPQDEGLYICDVENLVGSISLRASLTV--HLLRDDFRAEPKDTRVASGETALLEC 183
+ + ++ G Y V++ S+ + + + EP+ V+S L
Sbjct: 55 TVADATSENAGSYKVTVQDTDTMTSVESEVFLMEEAELIVNITEPQHFYVSSQTDVELHA 114
Query: 184 G-------PPKGQPEPTLHWKKNGQFIDLESSKSLDLSRRTL------------------ 218
P E W K ID +++ + + T
Sbjct: 115 TVKFSGGKTPADNYELHYSWSKGEDVID--TTQDITIQEFTADKNGVYTVKVWGESEDSA 172
Query: 219 --GWLRVRPLYWNVARPRANLNPRYIGRKMASLLIWNHPRVNRLSCFAEGSPLPSV---- 272
++ NV + +G + SL N+ + + G P ++
Sbjct: 173 ASASTKIMLATMNVDQDVVESKTVALGNE-ISL---NYVVSEDIVGDSSGMPNLTIKYNW 228
Query: 273 FWTQEGSQVLMFPGNAYGH----LHVTQEGTLRIQGVQKEDAGFFVCSA----------L 318
+ +EG G+ G +T +G L + +D F C A +
Sbjct: 229 YLQREGQLSPTLIGSEVGEALEGFSITPDGHLFKESATYDDTAKFWCVAKLYQQIEDETV 288
Query: 319 SVAGSTTVRAFLQVRE 334
VA ST+ + ++V +
Sbjct: 289 EVAASTSRKCSMEVVK 304
Score = 51.0 bits (121), Expect = 4e-07
Identities = 31/230 (13%), Positives = 61/230 (26%), Gaps = 62/230 (26%)
Query: 259 RLSCFAEGS-PLPSVF---WTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFV 314
L+ G PLPS WT++ TL + E+AG +
Sbjct: 21 TLTATVAGDEPLPSNLTYTWTKDDQPH------------ENNTATLTVADATSENAGSYK 68
Query: 315 CSALSVAGSTTVRAFLQVREFCVLPKGTFTLGQPNLATGNS-DLRRIAC----------- 362
+ T+V + + + E L +++ +L
Sbjct: 69 VTVQDTDTMTSVESEVFLMEEAELIVNITEPQHFYVSSQTDVELHATVKFSGGKTPADNY 128
Query: 363 ----------------------DLRETDSGLYTCTASSESGETSWSASLSVEPRPGPHAV 400
+ +G+YT ES +++ SAS +
Sbjct: 129 ELHYSWSKGEDVIDTTQDITIQEFTADKNGVYTVKVWGESEDSAASASTKIMLAT----- 183
Query: 401 HRMPDSGLFPGPPAAPVILNTTRGSVTLGWGEPEPRGGGVAPVIGYTVEY 450
+ ++L + E G + + T++Y
Sbjct: 184 -------MNVDQDVVESKTVALGNEISLNYVVSEDIVGDSSGMPNLTIKY 226
Score = 44.0 bits (103), Expect = 9e-05
Identities = 28/194 (14%), Positives = 58/194 (29%), Gaps = 28/194 (14%)
Query: 363 DLRETDSGLYTCTASSESGE-TSWSASLSVEPRPGPHAVHRMPDSGLFPGPPAAPVILNT 421
D ++G Y T + S +E + P + +
Sbjct: 58 DATSENAGSYKVTVQDTDTMTSVESEVFLMEEAELIVNI----------TEPQHFYVSSQ 107
Query: 422 TRGSVTLGWGEPEPRGGGVAPVIGYTVEYFSSDLQTGWVVAAHRITSTSITVSDLKPDTS 481
T V L G A + + T+ IT+ + D +
Sbjct: 108 T--DVELHATVKFSGGKTPADNYELHYSWSKGEDVID--------TTQDITIQEFTADKN 157
Query: 482 YMFIVRAENSHGLGIPSPVSPITRTLGLNSLVPQHLLDEARARLGTKV----VNLRELIP 537
++ V+ S S T+ + V Q +++ LG ++ V +++
Sbjct: 158 GVYTVKVWGESE---DSAASASTKIMLATMNVDQDVVESKTVALGNEISLNYVVSEDIVG 214
Query: 538 TASTAVRITWEVSW 551
+S +T + +W
Sbjct: 215 DSSGMPNLTIKYNW 228
>1wf5_A Sidekick 2 protein; FNIII domain, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: b.1.2.1
Length = 121
Score = 90.5 bits (225), Expect = 6e-22
Identities = 33/127 (25%), Positives = 50/127 (39%), Gaps = 16/127 (12%)
Query: 380 SGETSWSASLSVEPRPGPHAVHRMPDSGLFPGPPAAPVILNTTRGSVTLGWGEPEPRGGG 439
SG + SA L V P P P A + R ++ L W +P
Sbjct: 3 SGSSGRSAHLRVRQLPHA------------PEHPVA-TLSTVERRAINLTWTKPFDGN-- 47
Query: 440 VAPVIGYTVEYFSSDLQTGWVVAAHRITSTSITVSDLKPDTSYMFIVRAENSHGLGIPSP 499
+P+I Y +E ++ ++A+ +TS+TV L P SY F + A N G G S
Sbjct: 48 -SPLIRYILEMSENNAPWTVLLASVDPKATSVTVKGLVPARSYQFRLCAVNDVGKGQFSK 106
Query: 500 VSPITRT 506
+
Sbjct: 107 DTERVSL 113
Score = 27.3 bits (61), Expect = 6.3
Identities = 7/19 (36%), Positives = 8/19 (42%)
Query: 600 ATTTSYTVTHLRKFTKYEF 618
TS TV L Y+F
Sbjct: 73 PKATSVTVKGLVPARSYQF 91
>1cfb_A Drosophila neuroglian; neural adhesion molecule; HET: NAG; 2.00A
{Drosophila melanogaster} SCOP: b.1.2.1 b.1.2.1
Length = 205
Score = 93.2 bits (232), Expect = 7e-22
Identities = 40/215 (18%), Positives = 66/215 (30%), Gaps = 47/215 (21%)
Query: 410 PGPPAAPVILNTTRGSVTLGWGEPEPRGGGVAPVIGYTVEYFSSDLQTGWVVAAHRIT-S 468
P P I + W E +G +P++ YT+++ +S W A ++ +
Sbjct: 6 PNAPKLTGITCQAD-KAEIHW---EQQGDNRSPILHYTIQFNTSFTPASWDAAYEKVPNT 61
Query: 469 TSITVSDLKPDTSYMFIVRAENSHGLGIPSPVSPITRTLGLN-SLVPQHLLDEARARLGT 527
S V + P +Y F V A N G PS S T P ++
Sbjct: 62 DSSFVVQMSPWANYTFRVIAFNKIGASPPSAHSDSCTTQPDVPFKNPDNV---------- 111
Query: 528 KVVNLRELIPTASTAVRITWE----VSWGSVPQHLLDEARARLGTKVVNLRELIPTASTA 583
T + I+W + + H V+ + IP A+
Sbjct: 112 ------VGQGTEPNNLVISWTPMPEIEHNAPNFHY-----------YVSWKRDIPAAA-- 152
Query: 584 VRITWEKYNMATVMNAATTTSYTVTHLRKFTKYEF 618
WE N+ + + F KY
Sbjct: 153 ----WENNNIFD----WRQNNIVIADQPTFVKYLI 179
Score = 78.6 bits (194), Expect = 6e-17
Identities = 16/99 (16%), Positives = 27/99 (27%), Gaps = 2/99 (2%)
Query: 410 PGPPAAPVILNTTRGSVTLGWGEPEPRGGGVAPVIGYTVEYFSSDLQTGWVVAAHR-ITS 468
P V T ++ + W AP Y V + W
Sbjct: 105 FKNPDNVVGQGTEPNNLVISWTPMPEIEHN-APNFHYYVSWKRDIPAAAWENNNIFDWRQ 163
Query: 469 TSITVSDLKPDTSYMFIVRAENSHGLGIPSPVSPITRTL 507
+I ++D Y+ V A N G + + +
Sbjct: 164 NNIVIADQPTFVKYLIKVVAINDRGESNVAAEEVVGYSG 202
>2e3v_A Neural cell adhesion molecule 1, 140 kDa isoform; NCAM, N-CAM 1,
NCAM-120, CD56 antigen, membra protein, glycoprotein,
structural genomics, NPPSFA; HET: PGE BTB; 1.95A {Homo
sapiens}
Length = 122
Score = 89.8 bits (223), Expect = 1e-21
Identities = 26/101 (25%), Positives = 40/101 (39%), Gaps = 7/101 (6%)
Query: 411 GPPAAPVILNTTRG--SVTLGWGEPEPRGGGVAPVIGYTVEY---FSSDLQTGWVVAAHR 465
P++P I + + + EPE GG P++ Y E+ + W A
Sbjct: 6 SGPSSPSIDQVEPYSSTAQVQFDEPEATGG--VPILKYKAEWRAVGEEVWHSKWYDAKEA 63
Query: 466 ITSTSITVSDLKPDTSYMFIVRAENSHGLGIPSPVSPITRT 506
+T+ LKP+T+Y + A N GLG S S
Sbjct: 64 SMEGIVTIVGLKPETTYAVRLAALNGKGLGEISAASEFKTQ 104
Score = 27.8 bits (62), Expect = 4.9
Identities = 6/32 (18%), Positives = 9/32 (28%), Gaps = 1/32 (3%)
Query: 587 TWEKYNMATVMNAATTTSYTVTHLRKFTKYEF 618
W A+ T+ L+ T Y
Sbjct: 52 VWHSKWY-DAKEASMEGIVTIVGLKPETTYAV 82
>2eo9_A Roundabout homolog 1; beta-sandwich, IG-fold, H-ROBO-1, deleted in
U twenty twenty, neurogenesis, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 118
Score = 89.4 bits (222), Expect = 1e-21
Identities = 27/86 (31%), Positives = 35/86 (40%), Gaps = 2/86 (2%)
Query: 75 ISEPSDATVLSGSVVEFVCRVGGDPLPTILWRRDDGKMPT--GRAKILDDRSLQIENVGP 132
P + TV C G P+PTILWR+D + T R K L++ LQI
Sbjct: 12 RQGPVNQTVAVDGTFVLSCVATGSPVPTILWRKDGVLVSTQDSRIKQLENGVLQIRYAKL 71
Query: 133 QDEGLYICDVENLVGSISLRASLTVH 158
D G Y C G + A + V
Sbjct: 72 GDTGRYTCIASTPSGEATWSAYIEVQ 97
Score = 73.6 bits (181), Expect = 4e-16
Identities = 24/77 (31%), Positives = 41/77 (53%), Gaps = 4/77 (5%)
Query: 259 RLSCFAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSAL 318
LSC A GSP+P++ W ++G V + + G L+I+ + D G + C A
Sbjct: 27 VLSCVATGSPVPTILWRKDGVLVSTQDS----RIKQLENGVLQIRYAKLGDTGRYTCIAS 82
Query: 319 SVAGSTTVRAFLQVREF 335
+ +G T A+++V+EF
Sbjct: 83 TPSGEATWSAYIEVQEF 99
Score = 62.5 bits (152), Expect = 4e-12
Identities = 20/51 (39%), Positives = 26/51 (50%)
Query: 363 DLRETDSGLYTCTASSESGETSWSASLSVEPRPGPHAVHRMPDSGLFPGPP 413
+ D+G YTC AS+ SGE +WSA + V+ P R D L P P
Sbjct: 68 YAKLGDTGRYTCIASTPSGEATWSAYIEVQEFGVPVQPPRPTDPNLIPSAP 118
Score = 48.2 bits (115), Expect = 4e-07
Identities = 15/45 (33%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
Query: 164 FRAEPKDTRVASGETALLECGPPKGQPEPTLHWKKNGQFIDLESS 208
R P + VA T +L C G P PT+ W+K+G + + S
Sbjct: 11 IRQGPVNQTVAVDGTFVLSC-VATGSPVPTILWRKDGVLVSTQDS 54
>2crm_A Fibronectin type-III domain containing protein 3A; structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
b.1.2.1
Length = 120
Score = 89.4 bits (222), Expect = 1e-21
Identities = 20/96 (20%), Positives = 28/96 (29%), Gaps = 4/96 (4%)
Query: 410 PGPPAAPVIL-NTTRGSVTLGWGEPEPRGGGVAPVIGYTVEYFSSDLQTGWVVAAHRITS 468
PG P P + S + W P+ GG A + Y VE W + +
Sbjct: 18 PGIPVKPSVKGKIHSHSFKITWDPPKDNGG--ATINKYVVEMAEGSNGNKWEMIY-SGAT 74
Query: 469 TSITVSDLKPDTSYMFIVRAENSHGLGIPSPVSPIT 504
L P Y V + G S +
Sbjct: 75 REHLCDRLNPGCFYRLRVYCISDGGQSAVSESLLVQ 110
Score = 28.2 bits (63), Expect = 3.2
Identities = 3/24 (12%), Positives = 7/24 (29%)
Query: 595 TVMNAATTTSYTVTHLRKFTKYEF 618
++ + T + L Y
Sbjct: 67 EMIYSGATREHLCDRLNPGCFYRL 90
>2dm3_A KIAA0992 protein, palladin; beta-sandwich, myopalladin,
actin-associated scaffold, structural genomics, NPPSFA;
NMR {Homo sapiens}
Length = 110
Score = 88.6 bits (220), Expect = 2e-21
Identities = 30/94 (31%), Positives = 40/94 (42%), Gaps = 5/94 (5%)
Query: 70 IKPFPISEPSDATVLSGSVVEFVCRVGGDPLPTILWRRDDGKM-PTGRAKILDDR----S 124
+P + P D TV G + C+V G P P + W+ D + P K+L S
Sbjct: 8 FRPHFLQAPGDLTVQEGKLCRMDCKVSGLPTPDLSWQLDGKPVRPDSAHKMLVRENGVHS 67
Query: 125 LQIENVGPQDEGLYICDVENLVGSISLRASLTVH 158
L IE V +D G+Y C N G S L V
Sbjct: 68 LIIEPVTSRDAGIYTCIATNRAGQNSFSLELVVA 101
Score = 60.5 bits (147), Expect = 2e-11
Identities = 25/83 (30%), Positives = 37/83 (44%), Gaps = 5/83 (6%)
Query: 259 RLSCFAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEG--TLRIQGVQKEDAGFFVCS 316
R+ C G P P + W +G V P +A+ + V + G +L I+ V DAG + C
Sbjct: 28 RMDCKVSGLPTPDLSWQLDGKPV--RPDSAH-KMLVRENGVHSLIIEPVTSRDAGIYTCI 84
Query: 317 ALSVAGSTTVRAFLQVREFCVLP 339
A + AG + L V P
Sbjct: 85 ATNRAGQNSFSLELVVAAKESGP 107
Score = 51.6 bits (124), Expect = 2e-08
Identities = 14/45 (31%), Positives = 23/45 (51%), Gaps = 6/45 (13%)
Query: 363 DLRETDSGLYTCTASSESGETSWSASLSVEPRPGPHAVHRMPDSG 407
+ D+G+YTC A++ +G+ S+S L V + P SG
Sbjct: 72 PVTSRDAGIYTCIATNRAGQNSFSLELVVAAKESG------PSSG 110
Score = 44.3 bits (105), Expect = 7e-06
Identities = 12/38 (31%), Positives = 18/38 (47%), Gaps = 1/38 (2%)
Query: 164 FRAEPKDTRVASGETALLECGPPKGQPEPTLHWKKNGQ 201
F P D V G+ ++C G P P L W+ +G+
Sbjct: 12 FLQAPGDLTVQEGKLCRMDC-KVSGLPTPDLSWQLDGK 48
>1uey_A KIAA0343 protein; immunoglobulin-like beta-sandwich fold, NG-CAM
related cell adhesion molecule, fibronectin type III
domain, structural genomics; NMR {Homo sapiens} SCOP:
b.1.2.1
Length = 127
Score = 89.0 bits (221), Expect = 2e-21
Identities = 26/98 (26%), Positives = 40/98 (40%), Gaps = 4/98 (4%)
Query: 410 PGPPAAPVILNTTRGSVTLGWGEPEPRGGGVAPVIGYTVEYFSSDLQTGWVVAAHRITST 469
P PP + + SV L W P +P+ + +EY + + G ++ T
Sbjct: 17 PNPPFDLELTDQLDKSVQLSW-TPGDDNN--SPITKFIIEYEDAMHKPGLWHHQTEVSGT 73
Query: 470 -SITVSDLKPDTSYMFIVRAENSHGLGIPSPVSPITRT 506
+ +L P +Y F V A NS G +PS S T
Sbjct: 74 QTTAQLNLSPYVNYSFRVMAVNSIGKSLPSEASEQYLT 111
>2ic2_A CG9211-PA, GH03927P; IHOG, hedgehog, fibronectin type III, protein
binding; HET: MSE; 1.30A {Drosophila melanogaster} SCOP:
b.1.2.1
Length = 115
Score = 88.4 bits (219), Expect = 3e-21
Identities = 26/109 (23%), Positives = 39/109 (35%), Gaps = 15/109 (13%)
Query: 410 PGPPAAPVILNTTRGSVTLGWGEPEPRGGGVAPVIGYTVEYFSSDLQTGWVVAAHRI--- 466
PP P + + SV L W P G P++ + V+Y + W I
Sbjct: 3 TYPPTPPNVTRLSDESVMLRWMVPRNDG---LPIVIFKVQYRMVGKRKNWQTTNDNIPYG 59
Query: 467 ---------TSTSITVSDLKPDTSYMFIVRAENSHGLGIPSPVSPITRT 506
S + +V+DLKP +Y F + A S+ S S
Sbjct: 60 KPKWNSELGKSFTASVTDLKPQHTYRFRILAVYSNNDNKESNTSAKFYL 108
>2r15_A Myomesin-1; sarcomeric protein, IG-like domains, homodimer,
immunoglobul domain, muscle protein, thick filament,
contractIle protein; 2.24A {Homo sapiens}
Length = 212
Score = 91.5 bits (227), Expect = 3e-21
Identities = 23/159 (14%), Positives = 43/159 (27%), Gaps = 35/159 (22%)
Query: 80 DATVLSGSVVEFVCRV----------GGDPLPTILWRRDDGKM-PTGRAKILDD---RSL 125
+ LS + ++ + W + + + R K L
Sbjct: 2 SSIALSATDLKIQSTAEGIQLYSFVTYYVEDLKVNWSHNGSAIRYSDRVKTGVTGEQIWL 61
Query: 126 QIENVGPQDEGLYICDVENLVGSISLRASLTVHLLRDD--------------------FR 165
QI P D+G Y+ ++ + L+ +
Sbjct: 62 QINEPTPNDKGKYVMELFDGKTGHQKTVDLSGQAYDEAYAEFQRLKQAAIAEKNRARVLG 121
Query: 166 AEPKDTRVASGETALLECGPPKGQPEPTLHWKKNGQFID 204
P + G+ L C G P P + W KN + +
Sbjct: 122 GLPDVVTIQEGKALNLTC-NVWGDPPPEVSWLKNEKALA 159
Score = 87.6 bits (217), Expect = 7e-20
Identities = 24/125 (19%), Positives = 43/125 (34%), Gaps = 5/125 (4%)
Query: 39 SRRSRSIFGSVLGARGALSDDQWKLIAKEALIKPFPISEPSDATVLSGSVVEFVCRVGGD 98
+++ + G A + E P T+ G + C V GD
Sbjct: 85 HQKTVDLSGQAYDEAYAEFQRLKQAAIAEKNRARVLGGLPDVVTIQEGKALNLTCNVWGD 144
Query: 99 PLPTILWRRDDGKM-PTGRAKILDDR----SLQIENVGPQDEGLYICDVENLVGSISLRA 153
P P + W +++ + T + + I V D G Y V+N GS +
Sbjct: 145 PPPEVSWLKNEKALAQTDHCNLKFEAGRTAYFTINGVSTADSGKYGLVVKNKYGSETSDF 204
Query: 154 SLTVH 158
+++V
Sbjct: 205 TVSVF 209
Score = 69.9 bits (171), Expect = 8e-14
Identities = 31/199 (15%), Positives = 51/199 (25%), Gaps = 39/199 (19%)
Query: 173 VASGETALLECGPPKGQPEPTLHWKKNGQFIDL--------------------------- 205
++ E L + ++W NG I
Sbjct: 14 QSTAEGIQLYSFVTYYVEDLKVNWSHNGSAIRYSDRVKTGVTGEQIWLQINEPTPNDKGK 73
Query: 206 ----------ESSKSLDLSRRTLGWLRVRPLYWNVARPRANLNPRYIGRKMASLLIWNHP 255
K++DLS + A R +G + I
Sbjct: 74 YVMELFDGKTGHQKTVDLSGQAYDEAYAEFQRLKQAAIAEKNRARVLGGLPDVVTIQEGK 133
Query: 256 RVNRLSCFAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVC 315
+ L+C G P P V W + + L + + I GV D+G +
Sbjct: 134 AL-NLTCNVWGDPPPEVSWLKNE-KALAQTDHCNLKFEAGRTAYFTINGVSTADSGKYGL 191
Query: 316 SALSVAGSTTVRAFLQVRE 334
+ GS T + V
Sbjct: 192 VVKNKYGSETSDFTVSVFI 210
Score = 60.3 bits (146), Expect = 1e-10
Identities = 23/191 (12%), Positives = 44/191 (23%), Gaps = 59/191 (30%)
Query: 259 RLSCF-AEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSA 317
+L F V W+ GS + + ++ L+I D G +V
Sbjct: 21 QLYSFVTYYVEDLKVNWSHNGSAI--RYSDRVKTGVTGEQIWLQINEPTPNDKGKYVMEL 78
Query: 318 LSVAGSTTVRAFLQVREFCVLPKGTFTLGQPNL--------------------------- 350
L + + L Q +
Sbjct: 79 FDGKTGHQKTVDLSGQAYDEAYAEFQRLKQAAIAEKNRARVLGGLPDVVTIQEGKALNLT 138
Query: 351 --ATGN----------------SDLRRIACD-----------LRETDSGLYTCTASSESG 381
G+ +D + + + DSG Y ++ G
Sbjct: 139 CNVWGDPPPEVSWLKNEKALAQTDHCNLKFEAGRTAYFTINGVSTADSGKYGLVVKNKYG 198
Query: 382 ETSWSASLSVE 392
+ ++SV
Sbjct: 199 SETSDFTVSVF 209
Score = 51.8 bits (124), Expect = 1e-07
Identities = 13/84 (15%), Positives = 22/84 (26%), Gaps = 10/84 (11%)
Query: 363 DLRETDSGLYTCTASSESGETSWSASLSVEPRPGPHAVHRMPDSGLFPGPPAAPVILNTT 422
+ D G Y + LS + +A + A V+
Sbjct: 65 EPTPNDKGKYVMELFDGKTGHQKTVDLSGQAYDEAYAEFQRLKQAAIAEKNRARVLGGLP 124
Query: 423 R-------GSVTLG---WGEPEPR 436
++ L WG+P P
Sbjct: 125 DVVTIQEGKALNLTCNVWGDPPPE 148
>2dmk_A Midline 2 isoform 2; midline defect 2, tripartite motif protein 1,
midin-2, ring finger protein 60, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 127
Score = 88.0 bits (218), Expect = 5e-21
Identities = 22/108 (20%), Positives = 38/108 (35%), Gaps = 15/108 (13%)
Query: 410 PGPPAA-PVILNTTRGSVTLGWGEPEPRGGGVAPVIGYTVEYFSSDLQTGWV-------- 460
P PP+ + + ++T+ W + Y ++Y Q ++
Sbjct: 16 PNPPSIREELCTASHDTITVHW---ISDDEF--SISSYELQYTIFTGQANFISLYNSVDS 70
Query: 461 -VAAHRITSTSITVSDLKPDTSYMFIVRAENSHGLGIPSPVSPITRTL 507
+ I TV L+ T Y+FIV+A N G P T +
Sbjct: 71 WMIVPNIKQNHYTVHGLQSGTRYIFIVKAINQAGSRNSEPTRLKTNSQ 118
Score = 29.5 bits (66), Expect = 1.4
Identities = 9/42 (21%), Positives = 15/42 (35%)
Query: 577 IPTASTAVRITWEKYNMATVMNAATTTSYTVTHLRKFTKYEF 618
I T + + ++ YTV L+ T+Y F
Sbjct: 54 IFTGQANFISLYNSVDSWMIVPNIKQNHYTVHGLQSGTRYIF 95
>3caf_A Fibroblast growth factor receptor 2; FGFR2, D2, ATP-binding,
disease MU ectodermal dysplasia, glycoprotein,
heparin-binding, immuno domain, kinase; 1.96A {Homo
sapiens} PDB: 3cu1_A* 3euu_A 3dar_A 1wvz_A
Length = 100
Score = 87.1 bits (216), Expect = 6e-21
Identities = 29/89 (32%), Positives = 42/89 (47%), Gaps = 5/89 (5%)
Query: 74 PISEPSDATVLSGSVVEFVCRVGGDPLPTILWRRDDGKM-PTGRAKIL----DDRSLQIE 128
E V + + V+F C GG+P+PT+ W ++ + R SL +E
Sbjct: 11 EKMEKRLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIME 70
Query: 129 NVGPQDEGLYICDVENLVGSISLRASLTV 157
+V P D+G Y C VEN GSI+ L V
Sbjct: 71 SVVPSDKGNYTCVVENEYGSINHTYHLDV 99
Score = 56.7 bits (137), Expect = 3e-10
Identities = 18/75 (24%), Positives = 32/75 (42%), Gaps = 3/75 (4%)
Query: 259 RLSCFAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQE-GTLRIQGVQKEDAGFFVCSA 317
+ C A G+P+P++ W + G + + G V + +L ++ V D G + C
Sbjct: 27 KFRCPAGGNPMPTMRWLKNGKE--FKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVV 84
Query: 318 LSVAGSTTVRAFLQV 332
+ GS L V
Sbjct: 85 ENEYGSINHTYHLDV 99
Score = 45.1 bits (107), Expect = 3e-06
Identities = 16/62 (25%), Positives = 23/62 (37%), Gaps = 1/62 (1%)
Query: 165 RAEPKDTRVASGETALLECGPPKGQPEPTLHWKKNGQFIDLESSKSLDLSRRTLGWLRVR 224
+ E + V + T C P G P PT+ W KNG+ E R L +
Sbjct: 12 KMEKRLHAVPAANTVKFRC-PAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIME 70
Query: 225 PL 226
+
Sbjct: 71 SV 72
Score = 40.1 bits (94), Expect = 2e-04
Identities = 9/29 (31%), Positives = 14/29 (48%)
Query: 363 DLRETDSGLYTCTASSESGETSWSASLSV 391
+ +D G YTC +E G + + L V
Sbjct: 71 SVVPSDKGNYTCVVENEYGSINHTYHLDV 99
>1x4x_A Fibronectin type-III domain containing protein 3A; FN3,
immunoglobulin-like beta- sandwich fold, KIAA0970,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
b.1.2.1
Length = 106
Score = 87.0 bits (216), Expect = 7e-21
Identities = 20/97 (20%), Positives = 32/97 (32%), Gaps = 6/97 (6%)
Query: 410 PGPPAAPVILNTTRGSVTLGWGEPEPRGGGVAPVIGYTVEYFSSDLQTGWVVAAHRITST 469
P P + + + W P G V Y +E+ + G + +
Sbjct: 8 PDQCKPPQVTCRSATCAQVNWEVPLSNG---TDVTEYRLEWGGVE---GSMQICYCGPGL 61
Query: 470 SITVSDLKPDTSYMFIVRAENSHGLGIPSPVSPITRT 506
S + L P T+Y V+A + G G S V
Sbjct: 62 SYEIKGLSPATTYYCRVQALSVVGAGPFSEVVACVTP 98
Score = 28.0 bits (63), Expect = 3.0
Identities = 5/24 (20%), Positives = 7/24 (29%)
Query: 595 TVMNAATTTSYTVTHLRKFTKYEF 618
+ SY + L T Y
Sbjct: 53 QICYCGPGLSYEIKGLSPATTYYC 76
>2cr3_A Basic fibroblast growth factor receptor 1; IG fold, FGFR1, BFGF-R,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 99
Score = 86.7 bits (215), Expect = 8e-21
Identities = 20/86 (23%), Positives = 36/86 (41%), Gaps = 1/86 (1%)
Query: 72 PFPISEPSDATVLSGSVVEFVCRVGGDPLPTILWRRDDGKMPTGRAKILDDRSLQIENVG 131
E V G +++ CR+ D +I W RD ++ + +++++
Sbjct: 4 GSSGVEVESFLVHPGDLLQLRCRLRDDV-QSINWLRDGVQLAESNRTRITGEEVEVQDSV 62
Query: 132 PQDEGLYICDVENLVGSISLRASLTV 157
P D GLY C + GS + S+ V
Sbjct: 63 PADSGLYACVTSSPSGSDTTYFSVNV 88
Score = 58.2 bits (141), Expect = 9e-11
Identities = 16/76 (21%), Positives = 29/76 (38%), Gaps = 7/76 (9%)
Query: 259 RLSCFAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSAL 318
+L C S+ W ++G Q+ +T + +Q D+G + C
Sbjct: 22 QLRCRLRDDV-QSINWLRDGVQLA-----ESNRTRITG-EEVEVQDSVPADSGLYACVTS 74
Query: 319 SVAGSTTVRAFLQVRE 334
S +GS T + V +
Sbjct: 75 SPSGSDTTYFSVNVSD 90
Score = 46.6 bits (111), Expect = 1e-06
Identities = 16/45 (35%), Positives = 19/45 (42%), Gaps = 5/45 (11%)
Query: 363 DLRETDSGLYTCTASSESGETSWSASLSVEPRPGPHAVHRMPDSG 407
D DSGLY C SS SG + S++V P SG
Sbjct: 60 DSVPADSGLYACVTSSPSGSDTTYFSVNVSDALPSG-----PSSG 99
Score = 45.1 bits (107), Expect = 3e-06
Identities = 9/55 (16%), Positives = 20/55 (36%), Gaps = 4/55 (7%)
Query: 164 FRAEPKDTRVASGETALLECGPPKGQPEPTLHWKKNGQFIDLESSKSLDLSRRTL 218
E + V G+ L C + +++W ++G L S ++ +
Sbjct: 6 SGVEVESFLVHPGDLLQLRC-RLRDDV-QSINWLRDGV--QLAESNRTRITGEEV 56
>2ocw_A Polymeric-immunoglobulin receptor; SC, secretory, antibody,
immunity, immune system; NMR {Homo sapiens} PDB: 3chn_S
3cm9_S 3chn_J 3cm9_J
Length = 585
Score = 95.1 bits (235), Expect = 1e-20
Identities = 43/323 (13%), Positives = 84/323 (26%), Gaps = 54/323 (16%)
Query: 86 GSVVEFVCRVGGDPLPTILWRRDDGKMPT--GRAKILDDR-----SLQIENVGPQDEGLY 138
+V +F+CR ++ + P GR + S+ I + +D G Y
Sbjct: 246 ANVAKFLCRQSSGENCDVVVNTLGKRAPAFEGRILLNPQDKDGSFSVVITGLRKEDAGRY 305
Query: 139 ICDVENLVGSISLRASLTVHLL---RDDFRAEPKDTRVASGETALLECGPPKGQPEPTLH 195
+C + L P + +G + + C P + ++
Sbjct: 306 LCGAHSDGQLQEGSPIQAWQLFVNEESTIPRSPTVVKGVAGSSVAVLC-PYNRKESKSIK 364
Query: 196 W------KKNGQFIDLESSKSLDLSRR---------------TLGWLRVRP----LYWNV 230
+ +NG+ L S+ ++ T+ ++ YW +
Sbjct: 365 YWCLWEGAQNGRCPLLVDSEGWVKAQYEGRLSLLEEPGNGTFTVILNQLTSRDAGFYWCL 424
Query: 231 ARPRANLNPRY-IGRKMASLLIWNHPRVN-----------RLSCFAEGSPLPSVFWTQEG 278
I + V C W G
Sbjct: 425 TNGDTLWRTTVEIKIIEGEPNLKVPGNVTAVLGETLKVPCHFPCKFSSYEKYWCKWNNTG 484
Query: 279 SQVLMFPGNAYGHLHVTQE-----GTLRIQGVQKEDAGFFVCSALS-VAGSTTVRAFLQV 332
Q L V + +L + V + D G++ C T ++ V
Sbjct: 485 CQALPSQDEGPSKAFVNCDENSRLVSLTLNLVTRADEGWYWCGVKQGHFYGETAAVYVAV 544
Query: 333 REFCVLPKGTFTLGQPNLATGNS 355
E +L + + A
Sbjct: 545 EERKAAGSRDVSLAKADAAPDEK 567
Score = 91.6 bits (226), Expect = 1e-19
Identities = 65/493 (13%), Positives = 114/493 (23%), Gaps = 118/493 (23%)
Query: 57 SDDQWKLIAKEALIKPFPISEPSDATVLSGSVVEFVCRVGGDPLPT-ILWRRDDGKMP-- 113
S ++ E P +++ TV G V C + + G P
Sbjct: 98 SRGLSFDVSLEVSQGPGLLNDTKVYTVDLGRTVTINCPFKTENAQKRKSLYKQIGLYPVL 157
Query: 114 ------------TGRAKILDDRS------LQIENVGPQDEGLYICDVENLVGSISLRASL 155
TGR ++ + + I + D G Y+C + S A L
Sbjct: 158 VIDSSGYVNPNYTGRIRLDIQGTGQLLFSVVINQLRLSDAGQYLCQAGDDSNSNKKNADL 217
Query: 156 TVHLLRDDFRAEPKDTRV--------ASGETALLECGPPKGQPEPTLHWKKNGQFIDLES 207
V + E V A C + G+
Sbjct: 218 QVLKPEPELVYEDLRGSVTFHCALGPEVANVAKFLC-RQSSGENCDVVVNTLGKRAPAFE 276
Query: 208 SK-----SLDLSRRTLGWLRVRP----LYW----NVARPRANLNPRYIGRKMASLLIWNH 254
+ ++ +R Y + + + + +
Sbjct: 277 GRILLNPQDKDGSFSVVITGLRKEDAGRYLCGAHSDGQLQEGSPIQAWQLFVNEESTIPR 336
Query: 255 PRVN---------RLSCFAEGSPLPSVFW--TQEGSQVLMFPGNAY--GHLHVTQEG--- 298
+ C S+ + EG+Q P G + EG
Sbjct: 337 SPTVVKGVAGSSVAVLCPYNRKESKSIKYWCLWEGAQNGRCPLLVDSEGWVKAQYEGRLS 396
Query: 299 ----------TLRIQGVQKEDAGFFVCSA--------------------LSVAGSTTVRA 328
T+ + + DAGF+ C L V G+ T
Sbjct: 397 LLEEPGNGTFTVILNQLTSRDAGFYWCLTNGDTLWRTTVEIKIIEGEPNLKVPGNVTAVL 456
Query: 329 FLQVREFCVLP-----------KGTFTLGQPNLATGNSDLRRIACD-------------L 364
++ C P K T Q + + +
Sbjct: 457 GETLKVPCHFPCKFSSYEKYWCKWNNTGCQALPSQDEGPSKAFVNCDENSRLVSLTLNLV 516
Query: 365 RETDSGLYTCTASSES-GETSWSASLSVEPRPGPHAVHRMPDSGLFPGPPAAPVILNTTR 423
D G Y C + + ++VE R + P V+ + R
Sbjct: 517 TRADEGWYWCGVKQGHFYGETAAVYVAVEERKAAGSRDVSLAKA--DAAPDEKVLDSGFR 574
Query: 424 GSVTLGWGEPEPR 436
+PR
Sbjct: 575 --EIENKAIQDPR 585
Score = 87.7 bits (216), Expect = 3e-18
Identities = 52/327 (15%), Positives = 90/327 (27%), Gaps = 65/327 (19%)
Query: 74 PISEPSDATVLSGSVVEFVCRV---GGDPLPTILWRRDDGK---------------MPTG 115
PI P + + G+ V C + W R + G
Sbjct: 3 PIFGPEEVNSVEGNSVSITCYYPPTSVNRHTRKYWCRQGARGGCITLISSEGYVSSKYAG 62
Query: 116 RAKILDDR-----SLQIENVGPQDEGLYICDVENLVGSISLRASLTVHLLRDDFRAEPKD 170
RA + + + I + D G Y C + +S SL V + K
Sbjct: 63 RANLTNFPENGTFVVNIAQLSQDDSGRYKCGLGINSRGLSFDVSLEVS-QGPGLLNDTKV 121
Query: 171 TRVASGETALLECG-PPKGQPEPTLHWKKNGQFIDLESSKSLDLSRRTLGWLRVRPL--- 226
V G T + C + + +K+ G + L S ++ G +R+
Sbjct: 122 YTVDLGRTVTINCPFKTENAQKRKSLYKQIGLYPVLVIDSSGYVNPNYTGRIRLDIQGTG 181
Query: 227 ------------------YWNVAR-----PRANLNPRYIGRKM--------ASLLIWNHP 255
Y A + N + + + + S+
Sbjct: 182 QLLFSVVINQLRLSDAGQYLCQAGDDSNSNKKNADLQVLKPEPELVYEDLRGSVTFHCAL 241
Query: 256 R-----VNRLSCFAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEG-TLRIQGVQKED 309
V + C V G + F G + ++ I G++KED
Sbjct: 242 GPEVANVAKFLCRQSSGENCDVVVNTLGKRAPAFEGRILLNPQDKDGSFSVVITGLRKED 301
Query: 310 AGFFVCSALSVAGSTTVRAFLQVREFC 336
AG ++C A S + F
Sbjct: 302 AGRYLCGAHSDGQLQEGSPIQAWQLFV 328
Score = 43.8 bits (102), Expect = 1e-04
Identities = 50/349 (14%), Positives = 87/349 (24%), Gaps = 52/349 (14%)
Query: 168 PKDTRVASGETALLEC--GPPKGQPEPTLHWKKNGQFIDLESSKSLDLSRRTLGWLRVRP 225
P++ G + + C P +W + G + S + + R
Sbjct: 7 PEEVNSVEGNSVSITCYYPPTSVNRHTRKYWCRQGARGGCITLISSEGYVSSKYAGRA-- 64
Query: 226 LYWNVARPRANLNPRYIGRKMASLLIWNHPRVN---RLSCFAEGSPLPSVFWTQEGSQVL 282
N+ N ++ + R C + F
Sbjct: 65 ---NLTNFPENGT---------FVVNIAQLSQDDSGRYKCGLGINSRGLSFDVSLEVSQG 112
Query: 283 MFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVREFCVLPKGT 342
N V T+ I C + + Q+ + VL +
Sbjct: 113 PGLLNDTKVYTVDLGRTVTIN-----------CPFKTENAQKRKSLYKQIGLYPVLVIDS 161
Query: 343 FTLGQPNLA---------TGNSDLRRIACDLRETDSGLYTCTASSESGETSWSASLSVEP 393
PN TG + LR +D+G Y C A +S +A L V
Sbjct: 162 SGYVNPNYTGRIRLDIQGTGQLLFSVVINQLRLSDAGQYLCQAGDDSNSNKKNADLQVLK 221
Query: 394 RPGPHAVHRMPDSGLFPGPPAAPVILNTTRGSVTLGWGEPEP---RGGGVAPVIGYTVEY 450
+ S F V + G AP +
Sbjct: 222 PEPELVYEDLRGSVTFHCALGPEVANVAKFLCRQSSGENCDVVVNTLGKRAPAFEGRILL 281
Query: 451 FSSDLQTGWVVAAHRITSTSITVSDLKPDTSYMFIVRAENSHGLGIPSP 499
D S S+ ++ L+ + + ++ A + L SP
Sbjct: 282 NPQDKD----------GSFSVVITGLRKEDAGRYLCGAHSDGQLQEGSP 320
Score = 34.6 bits (78), Expect = 0.12
Identities = 30/203 (14%), Positives = 62/203 (30%), Gaps = 26/203 (12%)
Query: 363 DLRETDSGLYTCTASSESGETSWSASLSVEPRPGPHAVHRMPDSGLFPGPPAAPVILNTT 422
L + DSG Y C S S+ SL V P + D+ ++ V +N
Sbjct: 81 QLSQDDSGRYKCGLGINSRGLSFDVSLEVSQGP-----GLLNDTKVYTVDLGRTVTINCP 135
Query: 423 RGSVTLGWGEPEP----RGGGVAPVIGYTVEYFSSDLQTGWV---VAAHRITSTSITVSD 475
+ + + G+ PV+ + + TG + + S+ ++
Sbjct: 136 FKT----ENAQKRKSLYKQIGLYPVLVIDSSGYVNPNYTGRIRLDIQGTGQLLFSVVINQ 191
Query: 476 LKPDTSYMFIVRAENSHGLGIPSPVSPITRTLGLNSLVPQHLLDEARARLGTKVVNLREL 535
L+ + ++ +A + + + V + + L V L
Sbjct: 192 LRLSDAGQYLCQAGDDSN----------SNKKNADLQVLKPEPELVYEDLRGSVTFHCAL 241
Query: 536 IPTASTAVRITWEVSWGSVPQHL 558
P + + S G +
Sbjct: 242 GPEVANVAKFLCRQSSGENCDVV 264
>2ens_A Advanced glycosylation END product-specific receptor;
beta-sandwich, C2-SET, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 96
Score = 85.9 bits (213), Expect = 1e-20
Identities = 22/93 (23%), Positives = 37/93 (39%), Gaps = 5/93 (5%)
Query: 68 ALIKPFPISEPSDATVLSGSVVEFVCRVGGDPLPTILWRRDDGKMPTGRAKILDDRSLQI 127
L + + EP V G V C V P P I W +D +P + L +
Sbjct: 7 GLEEVQLVVEPEGGAVAPGGTVTLTCEVPAQPSPQIHWMKDGVPLP-----LPPSPVLIL 61
Query: 128 ENVGPQDEGLYICDVENLVGSISLRASLTVHLL 160
+GPQD+G Y C + ++++ ++
Sbjct: 62 PEIGPQDQGTYSCVATHSSHGPQESRAVSISII 94
Score = 60.5 bits (147), Expect = 1e-11
Identities = 12/74 (16%), Positives = 24/74 (32%), Gaps = 11/74 (14%)
Query: 259 RLSCFAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSAL 318
L+C P P + W ++G L + L + + +D G + C A
Sbjct: 29 TLTCEVPAQPSPQIHWMKDGVP-----------LPLPPSPVLILPEIGPQDQGTYSCVAT 77
Query: 319 SVAGSTTVRAFLQV 332
+ + +
Sbjct: 78 HSSHGPQESRAVSI 91
Score = 58.2 bits (141), Expect = 7e-11
Identities = 20/52 (38%), Positives = 24/52 (46%), Gaps = 1/52 (1%)
Query: 164 FRAEPKDTRVASGETALLECGPPKGQPEPTLHWKKNGQFIDLESSKSLDLSR 215
EP+ VA G T L C P QP P +HW K+G + L S L L
Sbjct: 13 LVVEPEGGAVAPGGTVTLTCEVP-AQPSPQIHWMKDGVPLPLPPSPVLILPE 63
Score = 38.5 bits (90), Expect = 6e-04
Identities = 11/46 (23%), Positives = 20/46 (43%), Gaps = 2/46 (4%)
Query: 346 GQPNLATGNSDLRRIACDLRETDSGLYTCTASSESGETSWSASLSV 391
G P + L + ++ D G Y+C A+ S S ++S+
Sbjct: 48 GVPLPLPPSPVLI-LP-EIGPQDQGTYSCVATHSSHGPQESRAVSI 91
>3rbs_A Myomesin-1; immunoglobulin C-SET domain, contractIle protein; 1.85A
{Homo sapiens}
Length = 207
Score = 89.2 bits (221), Expect = 2e-20
Identities = 26/173 (15%), Positives = 54/173 (31%), Gaps = 25/173 (14%)
Query: 70 IKPFPISEPSDATVLSGSVVEFVCRV-GGDPLPTILWRRDDGKM-PTGRAKILDDR---- 123
I PF +L V F + + + ++ ++ + K+ DR
Sbjct: 2 IDPF-TKSELAVEILEKGQVRFWMQAEKLSGNAKVNYIFNEKEIFEGPKYKMHIDRNTGI 60
Query: 124 -SLQIENVGPQDEGLYICDVENLVGSISLRASLTVHLLRDDFRA---------------- 166
+ +E + +DEG Y +++ + L + + +
Sbjct: 61 IEMFMEKLQDEDEGTYTFQLQDGKATNHSTVVLVGDVFKKLQKEAEFQRQEWIRKQGPHF 120
Query: 167 -EPKDTRVASGETALLECGPPKGQPEPTLHWKKNGQFIDLESSKSLDLSRRTL 218
E V LL+C + E + W K+ + I ++ TL
Sbjct: 121 VEYLSWEVTGECNVLLKCKVANIKKETHIVWYKDEREISVDEKHDFKDGICTL 173
Score = 73.4 bits (180), Expect = 4e-15
Identities = 17/86 (19%), Positives = 29/86 (33%), Gaps = 3/86 (3%)
Query: 75 ISEPSDATVLSGSVVEFVCRV-GGDPLPTILWRRDDGKMPTGRAKILDD--RSLQIENVG 131
E V V C+V I+W +D+ ++ D +L I
Sbjct: 120 FVEYLSWEVTGECNVLLKCKVANIKKETHIVWYKDEREISVDEKHDFKDGICTLLITEFS 179
Query: 132 PQDEGLYICDVENLVGSISLRASLTV 157
+D G+Y +++ G R L
Sbjct: 180 KKDAGIYEVILKDDRGKDKSRLKLVD 205
Score = 63.8 bits (155), Expect = 8e-12
Identities = 25/191 (13%), Positives = 45/191 (23%), Gaps = 57/191 (29%)
Query: 256 RVNRLSCFAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEG--TLRIQGVQKEDAGFF 313
+V + S V + ++ F G Y G + ++ +Q ED G +
Sbjct: 19 QVRFWMQAEKLSGNAKVNYIFNEKEI--FEGPKYKMHIDRNTGIIEMFMEKLQDEDEGTY 76
Query: 314 VCSALSVAGSTTVRAFLQVREFCVLPKGT--------------FTLGQPNLATGNSDLRR 359
+ L F L K F TG ++
Sbjct: 77 TFQLQDGKATNHSTVVLVGDVFKKLQKEAEFQRQEWIRKQGPHFVEYLSWEVTGECNV-L 135
Query: 360 IAC--------------------------------------DLRETDSGLYTCTASSESG 381
+ C + + D+G+Y + G
Sbjct: 136 LKCKVANIKKETHIVWYKDEREISVDEKHDFKDGICTLLITEFSKKDAGIYEVILKDDRG 195
Query: 382 ETSWSASLSVE 392
+ L E
Sbjct: 196 KDKSRLKLVDE 206
Score = 59.6 bits (144), Expect = 2e-10
Identities = 23/207 (11%), Positives = 50/207 (24%), Gaps = 44/207 (21%)
Query: 164 FRAEPKDTRVASGETALLECGPPKGQPEPTLHWKKNGQFIDLESSKSLDLSR-------- 215
F + K +++ N + I + + R
Sbjct: 5 FTKSELAVEILEKGQVRFWMQAEKLSGNAKVNYIFNEKEIFEGPKYKMHIDRNTGIIEMF 64
Query: 216 ----------------------RTLGWLRVRPLYWNVARPRANLNPRYIGRKMASLLIWN 253
+ V ++ + + +I ++ + +
Sbjct: 65 MEKLQDEDEGTYTFQLQDGKATNHSTVVLVGDVFKKLQKEAEFQRQEWIRKQGPHFVEYL 124
Query: 254 HPRVN-----RLSCFAEGS-PLPSVFWTQEGSQVLMFPGNAYGHLHVTQEG--TLRIQGV 305
V L C + W ++ ++ + H ++G TL I
Sbjct: 125 SWEVTGECNVLLKCKVANIKKETHIVWYKDEREISV------DEKHDFKDGICTLLITEF 178
Query: 306 QKEDAGFFVCSALSVAGSTTVRAFLQV 332
K+DAG + G R L
Sbjct: 179 SKKDAGIYEVILKDDRGKDKSRLKLVD 205
Score = 39.5 bits (92), Expect = 0.001
Identities = 9/67 (13%), Positives = 14/67 (20%), Gaps = 2/67 (2%)
Query: 363 DLRETDSGLYTCTASSESGETSWSASLSVEPRPGPHAVHRMPDSGLFPGPPAAPVILNTT 422
L++ D G YT + L + P +
Sbjct: 67 KLQDEDEGTYTFQLQDGKATNHSTVVLVGDVFKKLQKEAEFQRQEWIRKQG--PHFVEYL 124
Query: 423 RGSVTLG 429
VT
Sbjct: 125 SWEVTGE 131
>3qr2_A Basigin; CD147, EMMPRIN, immunoglobulin-like domain, beta sheet,
STRU genomics, berkeley structural genomics center,
BSGC, cell A; 2.30A {Homo sapiens} PDB: 3qqn_A
Length = 137
Score = 87.0 bits (215), Expect = 2e-20
Identities = 20/115 (17%), Positives = 34/115 (29%), Gaps = 17/115 (14%)
Query: 64 IAKEALIKPFPISEPSDATVLSGSVVEFVCRVGGDPLPTILWRRDDGKMPTGRAKILDDR 123
+ + P G VE C G P+P I W + +++ D
Sbjct: 14 LVPRGSHMAGFVQAPLSQQRWVGGSVELHCEAVGSPVPEIQWWFEGQGPNDICSQLWDGA 73
Query: 124 -----------------SLQIENVGPQDEGLYICDVENLVGSISLRASLTVHLLR 161
++ I+ + +D G Y C N L + V +R
Sbjct: 74 RLDRVHIHATYHQHAASTISIDTLVEEDTGTYECRASNDPDRNHLTRAPRVKWVR 128
Score = 63.5 bits (154), Expect = 3e-12
Identities = 19/86 (22%), Positives = 31/86 (36%), Gaps = 11/86 (12%)
Query: 259 RLSCFAEGSPLPSVFWTQEGSQVLMFPG-----------NAYGHLHVTQEGTLRIQGVQK 307
L C A GSP+P + W EG + + H T+ I + +
Sbjct: 40 ELHCEAVGSPVPEIQWWFEGQGPNDICSQLWDGARLDRVHIHATYHQHAASTISIDTLVE 99
Query: 308 EDAGFFVCSALSVAGSTTVRAFLQVR 333
ED G + C A + + +V+
Sbjct: 100 EDTGTYECRASNDPDRNHLTRAPRVK 125
Score = 27.7 bits (61), Expect = 7.1
Identities = 21/108 (19%), Positives = 35/108 (32%), Gaps = 15/108 (13%)
Query: 401 HRMPDSGLFPGPPAAPVIL----NTTR---GSVTLG---WGEPEP-----RGGGVAPVIG 445
H SGL P + + R GSV L G P P G I
Sbjct: 7 HHHHSSGLVPRGSHMAGFVQAPLSQQRWVGGSVELHCEAVGSPVPEIQWWFEGQGPNDIC 66
Query: 446 YTVEYFSSDLQTGWVVAAHRITSTSITVSDLKPDTSYMFIVRAENSHG 493
+ + + H+ +++I++ L + + + RA N
Sbjct: 67 SQLWDGARLDRVHIHATYHQHAASTISIDTLVEEDTGTYECRASNDPD 114
>2ny1_B T-cell surface glycoprotein CD4; HIV, GP120, CD4, viral
protein-immune system compl; HET: NAG SUC; 1.99A {Homo
sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 2nxz_B* 2ny0_B*
2nxy_B* 2ny2_B* 2ny3_B* 2ny4_B* 2ny5_C* 2ny6_B* 3jwd_C*
3jwo_C* 1g9m_C* 1g9n_C* 1gc1_C* 1rzj_C* 1rzk_C* 3o2d_A
3cd4_A 3lqa_C* 2b4c_C* 2qad_B* ...
Length = 184
Score = 88.1 bits (218), Expect = 2e-20
Identities = 18/94 (19%), Positives = 34/94 (36%), Gaps = 6/94 (6%)
Query: 65 AKEALIKPFPISEPSDATVLSGSVVEFVCRVGGDPLPTILWRRDDGKMPTGRAKILDDRS 124
+E + F ++ SD +L G + P++ R GK I ++
Sbjct: 91 KEEVQLLVFGLTANSDTHLLQGQSLTLTLESPPGSSPSVQCRSPRGK------NIQGGKT 144
Query: 125 LQIENVGPQDEGLYICDVENLVGSISLRASLTVH 158
L + + QD G + C V + + + V
Sbjct: 145 LSVSQLELQDSGTWTCTVLQNQKKVEFKIDIVVL 178
Score = 80.8 bits (199), Expect = 7e-18
Identities = 27/151 (17%), Positives = 46/151 (30%), Gaps = 32/151 (21%)
Query: 86 GSVVEFVCRVGGDPLPTILWRRDDGKMPTGRAKIL---------------------DDRS 124
G VE C W+ + G +
Sbjct: 10 GDTVELTCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQGNFP 69
Query: 125 LQIENVGPQDEGLYICDVENLVGSISLRASLTVHLLRDDFRAEPKDTRVASGETALLECG 184
L I+N+ +D YIC+VE+ V LL A DT + G++ L
Sbjct: 70 LIIKNLKIEDSDTYICEVED--------QKEEVQLLVFGLTANS-DTHLLQGQSLTLTL- 119
Query: 185 PPKGQPEPTLHWKKNGQFIDLESSKSLDLSR 215
P++ + ++ K+L +S+
Sbjct: 120 ESPPGSSPSVQCRSPRGKN-IQGGKTLSVSQ 149
Score = 70.8 bits (173), Expect = 2e-14
Identities = 24/184 (13%), Positives = 49/184 (26%), Gaps = 37/184 (20%)
Query: 176 GETALLECGPPKGQPEPTLHWKKNGQFIDLESSKSLDLSRRTLGWLRVRPLYWNVARPRA 235
G+T L C + HWK + Q L + S + R +
Sbjct: 10 GDTVELTCTAS-QKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQGNF 68
Query: 236 NL-----------------NPRYIGRKMASLLIWNHPRVN-------RLSCFAEGSPLPS 271
L + ++ + + + L+ + PS
Sbjct: 69 PLIIKNLKIEDSDTYICEVEDQKEEVQLLVFGLTANSDTHLLQGQSLTLTLESPPGSSPS 128
Query: 272 VFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQ 331
V + + TL + ++ +D+G + C+ L + +
Sbjct: 129 VQCRSPRGKN------------IQGGKTLSVSQLELQDSGTWTCTVLQNQKKVEFKIDIV 176
Query: 332 VREF 335
V F
Sbjct: 177 VLAF 180
Score = 70.4 bits (172), Expect = 4e-14
Identities = 24/169 (14%), Positives = 41/169 (24%), Gaps = 43/169 (25%)
Query: 260 LSCFAEGSPLPSVFWTQEGSQVLMFPGNAYGH---------------LHVTQEGTLRIQG 304
L+C A W ++ ++ L L I+
Sbjct: 15 LTCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQGNFPLIIKN 74
Query: 305 VQKEDAGFFVCSALSVAGSTTVRAFLQVREFCVLPKGTFTLGQ----------------- 347
++ ED+ ++C L V GQ
Sbjct: 75 LKIEDSDTYICEVEDQKEEVQ----LLVFGLTANSDTHLLQGQSLTLTLESPPGSSPSVQ 130
Query: 348 -----PNLATGNSDLRRIACDLRETDSGLYTCTASSESGETSWSASLSV 391
G L ++ L DSG +TCT + + + V
Sbjct: 131 CRSPRGKNIQGGKTLS-VS-QLELQDSGTWTCTVLQNQKKVEFKIDIVV 177
>3fl7_A Ephrin receptor; ATP-binding, kinase, nucleotide-binding, transfera
phosphorylation, transmembrane, tyrosine-protein kinase,
glycoprotein; HET: NAG; 2.50A {Homo sapiens} PDB:
2x10_A* 2x11_A 3mx0_A* 3mbw_A*
Length = 536
Score = 94.1 bits (233), Expect = 2e-20
Identities = 54/265 (20%), Positives = 84/265 (31%), Gaps = 65/265 (24%)
Query: 372 YTCTASSESGETSWSASLSVEPRPGPHAVHRMPDSGLFPGPPAAP--VILNTTRGSVTLG 429
C E S + S E G + P S PP+AP + V L
Sbjct: 293 SPCLECPEHTLPSPEGATSCECEEGFFRAPQDPASMPCTRPPSAPHYLTAVGMGAKVELR 352
Query: 430 WGEPEPRGGGVAPVIGYTVEYFSSDLQTG----------WVVAAHRITSTSITVSDLKPD 479
W P+ GG I Y+V ++G + H +T TS+TVSDL+P
Sbjct: 353 WTPPQDSGGR--EDIVYSVTCEQCWPESGECGPCEASVRYSEPPHGLTRTSVTVSDLEPH 410
Query: 480 TSYMFIVRAENSHGLGIPSPVSPITRTLGLNSLVPQHLLDEARARLGTKVVNLRELIPTA 539
+Y F V A N + S T ++ +N P + L +
Sbjct: 411 MNYTFTVEARNGVSGLVTSRSF-RTASVSINQTEPPKV----------------RLEGRS 453
Query: 540 STAVRITWEVSWGSVPQHLLDEARARLGTKVVNLRELIPTASTAV----RITWEKYNMAT 595
+T++ ++W + P + +T+ K +
Sbjct: 454 TTSLSVSWSI----------------------------PPPQQSRVWKYEVTYRKKGDSN 485
Query: 596 VMNAATT--TSYTVTHLRKFTKYEF 618
N T S T+ L T Y
Sbjct: 486 SYNVRRTEGFSVTLDDLAPDTTYLV 510
Score = 82.1 bits (202), Expect = 2e-16
Identities = 28/127 (22%), Positives = 40/127 (31%), Gaps = 18/127 (14%)
Query: 381 GETSWSASLSVEPRPGPHAVHRMPDSGLFPGPPAAPVILNTTRGSVTLGWGEPEPRGGGV 440
S S P + + S+++ W P P+
Sbjct: 424 SGLVTSRSFRTASVSIN------------QTEPPKVRLEGRSTTSLSVSWSIPPPQQS-- 469
Query: 441 APVIGYTVEYFSSDLQTGWVVAAHRITSTSITVSDLKPDTSYMFIVRAENSHGLGIPSPV 500
V Y V Y R S+T+ DL PDT+Y+ V+A G G S V
Sbjct: 470 -RVWKYEVTYR--KKGDSNSYNVRRTEGFSVTLDDLAPDTTYLVQVQALTQEGQGAGSKV 526
Query: 501 SPITRTL 507
+TL
Sbjct: 527 HEF-QTL 532
>2dn7_A Receptor-type tyrosine-protein phosphatase F; LAR protein,
leukocyte antigen related, structural genomics, NPPSFA;
NMR {Homo sapiens} SCOP: b.1.2.1
Length = 107
Score = 85.5 bits (212), Expect = 2e-20
Identities = 25/95 (26%), Positives = 39/95 (41%), Gaps = 5/95 (5%)
Query: 410 PGPPAAPVILNTTRGSVTLGWGEPEPRGGGVAPVIGYTVEYFSSDLQTGWVVAAHRITST 469
PG P +I T + L W P+ G ++GY ++Y +D +
Sbjct: 8 PGRPT-MMISTTAMNTALLQWHPPKELPG---ELLGYRLQYCRAD-EARPNTIDFGKDDQ 62
Query: 470 SITVSDLKPDTSYMFIVRAENSHGLGIPSPVSPIT 504
TV+ L T+Y+F + A+N GLG T
Sbjct: 63 HFTVTGLHKGTTYIFRLAAKNRAGLGEEFEKEIRT 97
Score = 30.4 bits (69), Expect = 0.53
Identities = 9/24 (37%), Positives = 11/24 (45%)
Query: 595 TVMNAATTTSYTVTHLRKFTKYEF 618
T+ +TVT L K T Y F
Sbjct: 54 TIDFGKDDQHFTVTGLHKGTTYIF 77
>2kdg_A Myotilin; immonoglobulin domain, actin-binding, structural protein,
cell membrane, cytoplasm, cytoskeleton, disease
mutation, immunoglobulin domain; NMR {Homo sapiens}
Length = 100
Score = 84.7 bits (210), Expect = 4e-20
Identities = 21/88 (23%), Positives = 32/88 (36%), Gaps = 5/88 (5%)
Query: 75 ISEPSDATVLSGSVVEFVCRVGGDPLPTILWRRDDGKM-PTGRAKIL----DDRSLQIEN 129
I P + ++ G +V G P P + W + + K++ SL E
Sbjct: 9 IQVPENMSIDEGRFCRMDFKVSGLPAPDVSWYLNGRTVQSDDLHKMIVSEKGLHSLIFEV 68
Query: 130 VGPQDEGLYICDVENLVGSISLRASLTV 157
V D G Y C +N G + L V
Sbjct: 69 VRASDAGAYACVAKNRAGEATFTVQLDV 96
Score = 62.0 bits (151), Expect = 4e-12
Identities = 22/78 (28%), Positives = 33/78 (42%), Gaps = 5/78 (6%)
Query: 259 RLSCFAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEG--TLRIQGVQKEDAGFFVCS 316
R+ G P P V W G V + + V+++G +L + V+ DAG + C
Sbjct: 24 RMDFKVSGLPAPDVSWYLNGRTV---QSDDLHKMIVSEKGLHSLIFEVVRASDAGAYACV 80
Query: 317 ALSVAGSTTVRAFLQVRE 334
A + AG T L V
Sbjct: 81 AKNRAGEATFTVQLDVLA 98
Score = 49.6 bits (119), Expect = 7e-08
Identities = 10/32 (31%), Positives = 19/32 (59%)
Query: 363 DLRETDSGLYTCTASSESGETSWSASLSVEPR 394
+R +D+G Y C A + +GE +++ L V +
Sbjct: 68 VVRASDAGAYACVAKNRAGEATFTVQLDVLAK 99
Score = 45.8 bits (109), Expect = 2e-06
Identities = 13/65 (20%), Positives = 26/65 (40%), Gaps = 5/65 (7%)
Query: 164 FRAEPKDTRVASGETALLECGPPK--GQPEPTLHWKKNGQFIDLESSKSLDLSRRTLGWL 221
F P++ + G ++ K G P P + W NG+ + + + +S + L L
Sbjct: 8 FIQVPENMSIDEGRFCRMDF---KVSGLPAPDVSWYLNGRTVQSDDLHKMIVSEKGLHSL 64
Query: 222 RVRPL 226
+
Sbjct: 65 IFEVV 69
>1zlg_A Anosmin 1; insulin-like growth factor receptor Cys-rich fold, WHEY
acidic protein fold, fibronectin type III fold, hormone-
growth factor complex; NMR {Homo sapiens}
Length = 680
Score = 93.9 bits (232), Expect = 4e-20
Identities = 44/280 (15%), Positives = 76/280 (27%), Gaps = 53/280 (18%)
Query: 348 PNLATGNSDLRRIACDLRETDSGLYTCTASSESGETSWSASLSVEPRPGPHAVHRMPDSG 407
P A+G + +C++ SG+ C ++ G T + P
Sbjct: 114 PEKASGFAAACVESCEVDNECSGVKKCCSNG-CGHTCQVPKTLYKGVP------------ 160
Query: 408 LFPGPPAAPVILNTTRGSVTLGWGEPEPRGGGVAPVIGYTVEY-------FSSDLQTGWV 460
P G + + W + Y V+ S D T W
Sbjct: 161 --LKPRKELRFTELQSGQLEVKWSSKFNISI---EPVIYVVQRRWNYGIHPSEDDATHWQ 215
Query: 461 VAAHRITSTSITVSDLKPDTSYMFIVRAENSHGLGIPSPVSPITRTLGLNSLVPQHLLDE 520
A + T + ++D++P Y F V A N HG + S R+
Sbjct: 216 TVA-QTTDERVQLTDIRPSRWYQFRVAAVNVHGTRGFTAPSKHFRS--------SKDPSA 266
Query: 521 ARARLGTKVVNLRELIPTASTAVRITWEV--SWGSVPQHLLDEARARLGTKVVNLRELIP 578
A ++ N + S V I W++ H V ++
Sbjct: 267 PPAPANLRLANST-VNSDGSVTVTIVWDLPEEPDIPVHHY-----------KVFWSWMVS 314
Query: 579 TASTAVRITWEKYNMATVMNAATTTSYTVTHLRKFTKYEF 618
+ S + S + L+ Y
Sbjct: 315 SKSLVPTKKKRRKTT-----DGFQNSVILEKLQPDCDYVV 349
Score = 74.2 bits (181), Expect = 6e-14
Identities = 50/321 (15%), Positives = 84/321 (26%), Gaps = 33/321 (10%)
Query: 322 GSTTVRAFLQVREFCVLPKGTFTLGQPNLATGNSDLRRIACDLRETDSGLYTCTASSESG 381
V +Q R + +D R D+R + + A + G
Sbjct: 188 SIEPVIYVVQRRWNYGIHPSEDDATHWQTVAQTTDERVQLTDIRPSRWYQFRVAAVNVHG 247
Query: 382 ETSWSASLSVEPRPGPHAVHRMPDSGLFPGPPAAPVILNTTRG-----SVTLGWGEPEPR 436
++A P R P PA + N+T +VT+ W PE
Sbjct: 248 TRGFTA---------PSKHFRSSKDPSAPPAPANLRLANSTVNSDGSVTVTIVWDLPEEP 298
Query: 437 GGGVAPVIGYTVEY------FSSDLQTGWVVAAHRITSTSITVSDLKPDTSYMFIVRAEN 490
PV Y V + S S+ + L+PD Y+ ++A
Sbjct: 299 DI---PVHHYKVFWSWMVSSKSLVPTKKKRRKTTDGFQNSVILEKLQPDCDYVVELQAIT 355
Query: 491 SHGLG--IPSPVSPITRTLGLNSLVPQHLLDEARARLGTKVVNLRELIPTASTAVRITWE 548
G + VS + + Q + R G L + + +
Sbjct: 356 YWGQTRLKSAKVSLHFTSTHATNNKEQ----LVKTRKGGIQTQLPFQRRRPTRPLEVGAP 411
Query: 549 VSWGSVPQHLLDEARARLGTKVVNLRELIPTASTAVRITWEKYNMATVMNAATTTSYTVT 608
Q + + T P A R T + + +
Sbjct: 412 FYQDGQLQVKVYWKKTEDPTVNRYHVRWFPEACAHNRTTGSEASSGMT----HENYIILQ 467
Query: 609 HLRKFTKYEFFLVPFFKTVEG 629
L KY+ + P
Sbjct: 468 DLSFSCKYKVTVQPIRPKSHS 488
Score = 62.3 bits (150), Expect = 3e-10
Identities = 38/268 (14%), Positives = 70/268 (26%), Gaps = 35/268 (13%)
Query: 374 CTASSESGETSWSASLSVEPRPGPHAVHRMPDSGLFPGPPAAPVILNTTRGSVTLGWGEP 433
T ++ S SL + ++ + G + R + L G P
Sbjct: 354 ITYWGQTRLKSAKVSLHFTSTHATNNKEQLVKT--RKGGIQTQLPFQRRRPTRPLEVGAP 411
Query: 434 EPRGGGVAPVI-----------GYTVEYFSSDLQ----TGWVVAAHRITSTSITVSDLKP 478
+ G + + Y V +F TG ++ I + DL
Sbjct: 412 FYQDGQLQVKVYWKKTEDPTVNRYHVRWFPEACAHNRTTGSEASSGMTHENYIILQDLSF 471
Query: 479 DTSYMFIVRAENSHGLGIPSPVSPIT------RTLGLNSLVPQHLLDEARARLGTKVVNL 532
Y V+ V T + + +++ K NL
Sbjct: 472 SCKYKVTVQPIRPKSHSKAEAVFFTTPPCSALKGKSHKPIGCLGEAGHVLSKVLAKPENL 531
Query: 533 RELIPTASTAVRITWEVSWGSVPQHLLDEARARLGTKVVNLRELIPTASTAVRITWEKYN 592
+ SW A+A L + + +T R +
Sbjct: 532 SASFIVQDVNITGH--FSW--------KMAKANLYQPMTGFQVTWAEVTTESRQNSLPNS 581
Query: 593 MA--TVMNAATTTSYTVTHLRKFTKYEF 618
+ + + + TV +LR T Y
Sbjct: 582 IISQSQILPSDHYVLTVPNLRPSTLYRL 609
Score = 61.9 bits (149), Expect = 4e-10
Identities = 21/147 (14%), Positives = 43/147 (29%), Gaps = 15/147 (10%)
Query: 367 TDSGLYTCTASSESGETSWSASLSVEPRPGPHAVHRMPDSGLFPGPPAAPVILNTTRGSV 426
++ T + + + G + P +A I+ +
Sbjct: 489 KAEAVFFTTPPCSALKGKSHKPIGCLGEAGHVLSKVLAK----PENLSASFIVQDVNITG 544
Query: 427 TLGWGEPEPRGGGVAPVIGYTVEYFSSDLQTGWVVAAHRITS---------TSITVSDLK 477
W + P+ G+ V + ++ + I S +TV +L+
Sbjct: 545 HFSWKMAKANLYQ--PMTGFQVTWAEVTTESRQNSLPNSIISQSQILPSDHYVLTVPNLR 602
Query: 478 PDTSYMFIVRAENSHGLGIPSPVSPIT 504
P T Y V+ G G + + T
Sbjct: 603 PSTLYRLEVQVLTPGGEGPATIKTFRT 629
>2yrz_A Integrin beta-4; GP150, CD104 antigen, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 118
Score = 85.2 bits (211), Expect = 4e-20
Identities = 27/97 (27%), Positives = 39/97 (40%), Gaps = 4/97 (4%)
Query: 410 PGPPAAPVILNTTRGSVTLGWGEPEPRGGGVAPVIGYTVEYFSSDLQTGWVVAAHRITST 469
P P V S+ + W EP P+ GY+VEY + + T
Sbjct: 18 PDTPTRLVFSALGPTSLRVSWQEPRCER----PLQGYSVEYQLLNGGELHRLNIPNPAQT 73
Query: 470 SITVSDLKPDTSYMFIVRAENSHGLGIPSPVSPITRT 506
S+ V DL P+ SY+F VRA++ G G +
Sbjct: 74 SVVVEDLLPNHSYVFRVRAQSQEGWGREREGVITIES 110
Score = 28.1 bits (63), Expect = 4.1
Identities = 7/32 (21%), Positives = 9/32 (28%), Gaps = 4/32 (12%)
Query: 587 TWEKYNMATVMNAATTTSYTVTHLRKFTKYEF 618
+ N+ TS V L Y F
Sbjct: 61 ELHRLNIPNP----AQTSVVVEDLLPNHSYVF 88
>1x5g_A Neogenin; RGM binding, fibronectin type III domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
b.1.2.1
Length = 116
Score = 85.1 bits (211), Expect = 5e-20
Identities = 31/127 (24%), Positives = 46/127 (36%), Gaps = 19/127 (14%)
Query: 381 GETSWSASLSVEPRPGPHAVHRMPDSGLFPGPPAAPVILNTTRGSVTLGWGEPEPRGGGV 440
G + S + +P PGP + S+T+ W P G
Sbjct: 1 GSSGSSGRVETQPEVQL------------PGPAPNLRAYAASPTSITVTWETPVSGNG-- 46
Query: 441 APVIGYTVEYFSSDLQTGWVVAAHRITSTSITVSDLKPDTSYMFIVRAENSHGLGIPSPV 500
+ Y + Y ++S S T++ LK T Y F V A N HG G+ +P
Sbjct: 47 -EIQNYKLYYMEKG---TDKEQDVDVSSHSYTINGLKKYTEYSFRVVAYNKHGPGVSTPD 102
Query: 501 SPITRTL 507
+ RTL
Sbjct: 103 VAV-RTL 108
Score = 31.1 bits (71), Expect = 0.29
Identities = 13/62 (20%), Positives = 23/62 (37%), Gaps = 18/62 (29%)
Query: 575 ELIPTASTAVRITW------------------EKYNMATVMNAATTTSYTVTHLRKFTKY 616
+ T++ +TW EK ++ SYT+ L+K+T+Y
Sbjct: 25 RAYAASPTSITVTWETPVSGNGEIQNYKLYYMEKGTDKEQDVDVSSHSYTINGLKKYTEY 84
Query: 617 EF 618
F
Sbjct: 85 SF 86
>3irg_A Titin; IG-like, titin, OBSL1, complex, alternative splicing,
ATP-binding, calcium, calmodulin-binding,
cardiomyopathy; 1.30A {Homo sapiens} PDB: 3knb_A 3q5o_A
2wp3_T* 2wwk_T 2wwm_D 2y9r_T*
Length = 100
Score = 84.3 bits (209), Expect = 5e-20
Identities = 27/89 (30%), Positives = 41/89 (46%), Gaps = 6/89 (6%)
Query: 75 ISEPSDATVLSGSVVEFVCRVGGDPLPTILWRRDDGKMPT---GRAKIL---DDRSLQIE 128
+ PSD ++ G V+ C G+P P + W K+ + GR I D +L I
Sbjct: 9 EALPSDISIDEGKVLTVACAFTGEPTPEVTWSCGGRKIHSQEQGRFHIENTDDLTTLIIM 68
Query: 129 NVGPQDEGLYICDVENLVGSISLRASLTV 157
+V QD GLY + N GS S ++ +
Sbjct: 69 DVQKQDGGLYTLSLGNEFGSDSATVNIHI 97
Score = 69.3 bits (170), Expect = 1e-14
Identities = 21/78 (26%), Positives = 33/78 (42%), Gaps = 6/78 (7%)
Query: 259 RLSCFAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEG---TLRIQGVQKEDAGFFVC 315
++C G P P V W+ G ++ G H+ TL I VQK+D G +
Sbjct: 24 TVACAFTGEPTPEVTWSCGGRKI---HSQEQGRFHIENTDDLTTLIIMDVQKQDGGLYTL 80
Query: 316 SALSVAGSTTVRAFLQVR 333
S + GS + + +R
Sbjct: 81 SLGNEFGSDSATVNIHIR 98
Score = 44.6 bits (106), Expect = 5e-06
Identities = 9/30 (30%), Positives = 18/30 (60%)
Query: 363 DLRETDSGLYTCTASSESGETSWSASLSVE 392
D+++ D GLYT + +E G S + ++ +
Sbjct: 69 DVQKQDGGLYTLSLGNEFGSDSATVNIHIR 98
Score = 42.7 bits (101), Expect = 2e-05
Identities = 11/40 (27%), Positives = 17/40 (42%), Gaps = 1/40 (2%)
Query: 164 FRAEPKDTRVASGETALLECGPPKGQPEPTLHWKKNGQFI 203
A P D + G+ + C G+P P + W G+ I
Sbjct: 8 IEALPSDISIDEGKVLTVAC-AFTGEPTPEVTWSCGGRKI 46
>3jz7_A MCAR, CAR, coxsackievirus and adenovirus receptor homolog; cell
adhesion molecule, immunoglobuline superfamily,
alternative splicing, cell adhesion; 2.19A {Mus
musculus} PDB: 3mj7_B* 2npl_X
Length = 214
Score = 87.8 bits (217), Expect = 6e-20
Identities = 27/173 (15%), Positives = 46/173 (26%), Gaps = 33/173 (19%)
Query: 78 PSDATVLSGSVVEFVCRVGGDPLPT----ILWRRDDGKMPT------------------- 114
G C+ P I W
Sbjct: 7 EQRIEKAKGETAYLPCKFTLSPEDQGPLDIEWLISPSDNQIVDQVIILYSGDKIYDNYYP 66
Query: 115 ---GRAKILDDR------SLQIENVGPQDEGLYICDVENLVGSISLRASLTVHLLRDDFR 165
GR + S+ + N+ D G Y C V+ G + + LTV L++
Sbjct: 67 DLKGRVHFTSNDVKSGDASINVTNLQLSDIGTYQCKVKKAPGVANKKFLLTV-LVKPSGT 125
Query: 166 AEPKDTRVASGETALLECGPPKGQPEPTLHWKKNGQFIDLESSKSLDLSRRTL 218
D G L+C P +G W+K + + +++ +
Sbjct: 126 RCFVDGSEEIGNDFKLKCEPKEGSLPLQFEWQKLSDSQTMPTPWLAEMTSPVI 178
Score = 82.4 bits (203), Expect = 5e-18
Identities = 22/92 (23%), Positives = 34/92 (36%), Gaps = 3/92 (3%)
Query: 69 LIKPFPISEPSDATVLSGSVVEFVCRV-GGDPLPTILWRRDDG--KMPTGRAKILDDRSL 125
L+KP D + G+ + C G W++ MPT + +
Sbjct: 119 LVKPSGTRCFVDGSEEIGNDFKLKCEPKEGSLPLQFEWQKLSDSQTMPTPWLAEMTSPVI 178
Query: 126 QIENVGPQDEGLYICDVENLVGSISLRASLTV 157
++N + G Y C V+N VGS L V
Sbjct: 179 SVKNASSEYSGTYSCTVQNRVGSDQCMLRLDV 210
Score = 70.5 bits (172), Expect = 6e-14
Identities = 32/215 (14%), Positives = 55/215 (25%), Gaps = 57/215 (26%)
Query: 168 PKDTRVASGETALLEC---GPPKGQPEPTLHWKKNGQFIDLESSKSLDLSRRTLGWLRVR 224
+ A GETA L C P+ Q + W + + + S ++
Sbjct: 7 EQRIEKAKGETAYLPCKFTLSPEDQGPLDIEWLISPSDNQIVDQVIILYSGD-----KIY 61
Query: 225 PLYWNVARPRANLNPRYIGRKMASLLIWNH------------------------------ 254
Y+ + R + + AS+ + N
Sbjct: 62 DNYYPDLKGRVHFTSNDVKSGDASINVTNLQLSDIGTYQCKVKKAPGVANKKFLLTVLVK 121
Query: 255 ---PRVN-----------RLSCFA-EGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGT 299
R +L C EGS W + M L
Sbjct: 122 PSGTRCFVDGSEEIGNDFKLKCEPKEGSLPLQFEWQKLSDSQTMPTP----WLAEMTSPV 177
Query: 300 LRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVRE 334
+ ++ E +G + C+ + GS L V
Sbjct: 178 ISVKNASSEYSGTYSCTVQNRVGSDQCMLRLDVVP 212
Score = 38.1 bits (88), Expect = 0.004
Identities = 12/56 (21%), Positives = 25/56 (44%), Gaps = 2/56 (3%)
Query: 340 KGTFTLGQPNLATGNSDLRRIACDLRETDSGLYTCTASSESGETSWSASLSVEPRP 395
KG ++ +G++ + + +L+ +D G Y C G + L+V +P
Sbjct: 69 KGRVHFTSNDVKSGDASIN-VT-NLQLSDIGTYQCKVKKAPGVANKKFLLTVLVKP 122
>3ry4_A Low affinity immunoglobulin gamma FC region recep; FC receptor,
CD32, immunoglobulin superfamily, low responder
polymorphism, cell membrane; HET: NAG; 1.50A {Homo
sapiens} PDB: 1fcg_A 3ry5_A 1h9v_A 3d5o_F* 3ry6_C*
2fcb_A
Length = 170
Score = 86.4 bits (214), Expect = 6e-20
Identities = 30/141 (21%), Positives = 44/141 (31%), Gaps = 11/141 (7%)
Query: 71 KPFPISEPSDATVLSGSVVEFVCRVGGDPLP-TILWRRDDGKMPTGRAKILDDRSLQIEN 129
K EP VL V C+ P +I W + +PT +
Sbjct: 4 KAVLKLEPPWINVLQEDSVTLTCQGARSPESDSIQWFHNGNLIPT------HTQPSYRFK 57
Query: 130 VGPQDEGLYICDVENLVGSISLRASLTVHLLRDDFRAEPKDTRVASGETALLECGPPKGQ 189
D G Y C S+S LTV + + GET +L C K +
Sbjct: 58 ANNNDSGEYTCQTGQ--TSLSDPVHLTVL--FEWLVLQTPHLEFQEGETIMLRCHSWKDK 113
Query: 190 PEPTLHWKKNGQFIDLESSKS 210
P + + +NG+
Sbjct: 114 PLVKVTFFQNGKSQKFSHLDP 134
Score = 58.7 bits (142), Expect = 3e-10
Identities = 24/175 (13%), Positives = 49/175 (28%), Gaps = 22/175 (12%)
Query: 167 EPKDTRVASGETALLECGPPKGQPEPTLHWKKNGQFIDLESSKSLDLSRRTLGWLRVRPL 226
EP V ++ L C + ++ W NG I ++ +
Sbjct: 10 EPPWINVLQEDSVTLTCQGARSPESDSIQWFHNGNLI-PTHTQPSYRFKAN---NNDSGE 65
Query: 227 YWNVARPRANLNPRYIGRKMASLLIWNHPRVNR------LSCFAEGS-PLPSVFWTQEGS 279
Y + +P ++ L++ + L C + PL V + Q G
Sbjct: 66 YTCQTGQTSLSDPVHLTVLFEWLVLQTPHLEFQEGETIMLRCHSWKDKPLVKVTFFQNGK 125
Query: 280 QVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRAF-LQVR 333
+ T I +G + C+ + + + V+
Sbjct: 126 SQKFSHLD----------PTFSIPQANHSHSGDYHCTGNIGYTLFSSKPVTITVQ 170
Score = 56.0 bits (135), Expect = 2e-09
Identities = 12/86 (13%), Positives = 22/86 (25%), Gaps = 6/86 (6%)
Query: 74 PISEPSDATVLSGSVVEFVCRV-GGDPLPTILWRRDDGKMPTGRAKILDDRSLQIENVGP 132
+ + G + C PL + + ++ D + I
Sbjct: 88 LVLQTPHLEFQEGETIMLRCHSWKDKPLVKVTFFQNGKSQKFSH----LDPTFSIPQANH 143
Query: 133 QDEGLYICDVENLVGSI-SLRASLTV 157
G Y C S ++TV
Sbjct: 144 SHSGDYHCTGNIGYTLFSSKPVTITV 169
Score = 49.8 bits (119), Expect = 3e-07
Identities = 27/160 (16%), Positives = 45/160 (28%), Gaps = 42/160 (26%)
Query: 260 LSCFAEGSPLP-SVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSAL 318
L+C SP S+ W G+ + T D+G + C
Sbjct: 24 LTCQGARSPESDSIQWFHNGNLIP------------THTQPSYRFKANNNDSGEYTCQTG 71
Query: 319 SVAGSTTVRAFLQVR---EFCVLPKGTFTLGQP-NL---ATGNSDLRRIA---------- 361
+ S V L V P F G+ L + + L ++
Sbjct: 72 QTSLSDPVH--LTVLFEWLVLQTPHLEFQEGETIMLRCHSWKDKPLVKVTFFQNGKSQKF 129
Query: 362 ---------CDLRETDSGLYTCTASSESG-ETSWSASLSV 391
+ SG Y CT + +S +++V
Sbjct: 130 SHLDPTFSIPQANHSHSGDYHCTGNIGYTLFSSKPVTITV 169
Score = 27.5 bits (61), Expect = 8.8
Identities = 9/31 (29%), Positives = 10/31 (32%), Gaps = 2/31 (6%)
Query: 365 RETDSGLYTCTASSESGETSWSASLSVEPRP 395
DSG YTC S L+V
Sbjct: 59 NNNDSGEYTCQT--GQTSLSDPVHLTVLFEW 87
>1vca_A VCAM-D1,2, human vascular cell adhesion molecule-1; immunoglobulin
superfamily, integrin-binding, cell adhesion protein;
1.80A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 PDB: 1ij9_A
1vsc_A
Length = 202
Score = 87.1 bits (215), Expect = 7e-20
Identities = 19/137 (13%), Positives = 36/137 (26%), Gaps = 4/137 (2%)
Query: 75 ISEPSDATVLSGSVVEFVCRVGGDPLPTILWRRDDGKMPTGRAKILDDRS-LQIENVGPQ 133
+ S G V C G P WR G+ S L + V
Sbjct: 5 TTPESRYLAQIGDSVSLTCSTTGCESPFFSWRTQIDSPLNGKVTNEGTTSTLTMNPVSFG 64
Query: 134 DEGLYICDVENLVGSISLRASLTVHLLRDDFRAEPKDTRVASGETALLECGPPKGQPEP- 192
+E Y+C + + ++ + +G+ ++C P
Sbjct: 65 NEHSYLCTATCESRKLEKGIQVEIY-SFPKDPEIHLSGPLEAGKPITVKCSVADVYPFDR 123
Query: 193 -TLHWKKNGQFIDLESS 208
+ K + +
Sbjct: 124 LEIDLLKGDHLMKSQEF 140
Score = 44.4 bits (104), Expect = 3e-05
Identities = 16/94 (17%), Positives = 30/94 (31%), Gaps = 9/94 (9%)
Query: 259 RLSCFAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSAL 318
L+C G P W + L + TL + V + ++C+A
Sbjct: 20 SLTCSTTGCESPFFSWRTQIDSPL-----NGKVTNEGTTSTLTMNPVSFGNEHSYLCTAT 74
Query: 319 SVAGSTTVRAFLQVREFCVLPK----GTFTLGQP 348
+ +++ F P+ G G+P
Sbjct: 75 CESRKLEKGIQVEIYSFPKDPEIHLSGPLEAGKP 108
Score = 37.4 bits (86), Expect = 0.007
Identities = 11/88 (12%), Positives = 21/88 (23%), Gaps = 11/88 (12%)
Query: 72 PFPISEPSDATVLSGSVVEFVCRVGGD---PLPTILWRRDDGKMPTGRAKILDDRS---- 124
P + +G + C V I + D M + DR
Sbjct: 92 PKDPEIHLSGPLEAGKPITVKCSVADVYPFDRLEIDLLKGDHLMKSQEFLEDADRKSLET 151
Query: 125 ----LQIENVGPQDEGLYICDVENLVGS 148
+ V + +C + +
Sbjct: 152 KSLEVTFTPVIEDIGKVLVCRAKLHIDE 179
Score = 31.3 bits (70), Expect = 0.72
Identities = 20/158 (12%), Positives = 45/158 (28%), Gaps = 25/158 (15%)
Query: 363 DLRETDSGLYTCTASSESGETSWSASLSVEPRPGPHAVHRMPDSGLFPGPPAAPVILNTT 422
+ + Y CTA+ ES + + + P L G P+ + +
Sbjct: 60 PVSFGNEHSYLCTATCESRKLEKGIQVEIYSF--PKDPEIHLSGPLEAG---KPITVKCS 114
Query: 423 ------RGSVTLGWGEPEPRGGGVAPVIGYTVEYFSSDLQTGWVVAAHRITSTSITVSDL 476
+ + +G + + + L+T S +T + +
Sbjct: 115 VADVYPFDRLEIDL----LKGDHLMKSQEFLEDADRKSLETK---------SLEVTFTPV 161
Query: 477 KPDTSYMFIVRAENSHGLGIPSPVSPITRTLGLNSLVP 514
D + + RA+ + S + L +
Sbjct: 162 IEDIGKVLVCRAKLHID-EMDSVPTVRQAVKELQVYIS 198
>3r4d_A CEA-related cell adhesion molecule 1, isoform 1/2; immunoglobulin,
beta-sandwich, mceacam1A - immunoglobulin FO spike NTD -
galectin-like beta-sandwich fold; HET: NAG; 3.10A {Mus
musculus} PDB: 1l6z_A*
Length = 208
Score = 87.0 bits (215), Expect = 8e-20
Identities = 27/163 (16%), Positives = 48/163 (29%), Gaps = 23/163 (14%)
Query: 77 EPSDATVLSGSVVEFVCRVGGDPLPTILWRRDD--------------------GKMPTGR 116
E V + V + L W + + G+ +GR
Sbjct: 5 EAVPPQVAEDNNVLLLVHNLPLALGAFAWYKGNTTAIDKEIARFVPNSNMNFTGQAYSGR 64
Query: 117 AKILDDRSLQIENVGPQDEGLYICDVENLVG-SISLRASLTVHLLRDDFRAEPKDTRVAS 175
I + SL + + +D G+Y D+ + VH + +T V
Sbjct: 65 EIIYSNGSLLFQMITMKDMGVYTLDMTDENYRRTQATVRFHVHQPVTQPFLQVTNTTVKE 124
Query: 176 GETALLECGPPKGQPEPTLHWKKNGQFIDLESSKSLDLSRRTL 218
++ L C + W N Q + L +L + L
Sbjct: 125 LDSVTLTCLS--NDIGANIQWLFNSQSLQLTERMTLSQNNSIL 165
Score = 70.1 bits (171), Expect = 6e-14
Identities = 19/90 (21%), Positives = 34/90 (37%), Gaps = 4/90 (4%)
Query: 72 PFPISEPSDATVLSGSVVEFVCRVGGDPLPTILWRRDDGKMP-TGRAKIL-DDRSLQIEN 129
P + ++ TV V C I W + + T R + ++ L+I+
Sbjct: 111 TQPFLQVTNTTVKELDSVTLTCLSNDIG-ANIQWLFNSQSLQLTERMTLSQNNSILRIDP 169
Query: 130 VGPQDEGLYICDVENLVGS-ISLRASLTVH 158
+ +D G Y C++ N V S L +
Sbjct: 170 IKREDAGEYQCEISNPVSVRRSNSIKLDII 199
Score = 59.7 bits (144), Expect = 2e-10
Identities = 36/192 (18%), Positives = 51/192 (26%), Gaps = 52/192 (27%)
Query: 260 LSCFAEGSPLPSVFWTQEGSQVL-------------MFPGNAY-GHLHVTQEGTLRIQGV 305
L L + W + + + F G AY G + G+L Q +
Sbjct: 19 LLVHNLPLALGAFAWYKGNTTAIDKEIARFVPNSNMNFTGQAYSGREIIYSNGSLLFQMI 78
Query: 306 QKEDAGFFVCSALSVAGSTTVRAFLQVREFC------------VLPKGTFTL-------- 345
+D G + T V + TL
Sbjct: 79 TMKDMGVYTLDMTDENYRRTQATVRFHVHQPVTQPFLQVTNTTVKELDSVTLTCLSNDIG 138
Query: 346 --------GQP-------NLATGNSDLRRIACDLRETDSGLYTCTAS-SESGETSWSASL 389
Q L+ NS L RI ++ D+G Y C S S S S L
Sbjct: 139 ANIQWLFNSQSLQLTERMTLSQNNSIL-RID-PIKREDAGEYQCEISNPVSVRRSNSIKL 196
Query: 390 SVEPRPGPHAVH 401
+ P H H
Sbjct: 197 DIIFDPHHHHHH 208
Score = 49.3 bits (117), Expect = 9e-07
Identities = 30/201 (14%), Positives = 54/201 (26%), Gaps = 42/201 (20%)
Query: 167 EPKDTRVASGETALLECGPPKGQPEPTLHWKKNGQFID---------------------- 204
E +VA LL W K
Sbjct: 5 EAVPPQVAEDNNVLLLV-HNLPLALGAFAWYKGNTTAIDKEIARFVPNSNMNFTGQAYSG 63
Query: 205 ---LESSKSLDLSRRTL---GWLRVRPLYWNVARPRANLNPRYIGRKMASLLIWNHPRVN 258
+ S+ SL T+ G + N R +A + L + V
Sbjct: 64 REIIYSNGSLLFQMITMKDMGVYTLDMTDENYRRTQATVRFHVHQPVTQPFLQVTNTTVK 123
Query: 259 -----RLSCFAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEG-TLRIQGVQKEDAGF 312
L+C + ++ W + + + ++Q LRI +++EDAG
Sbjct: 124 ELDSVTLTCLSNDIG-ANIQWLFNSQSLQLTE-----RMTLSQNNSILRIDPIKREDAGE 177
Query: 313 FVCSALSVAGSTTVRAF-LQV 332
+ C + + L +
Sbjct: 178 YQCEISNPVSVRRSNSIKLDI 198
>2kbg_A N-CAM 2, neural cell adhesion molecule 2; fibronectin type III
module, beta-sheet sandwich, cell membrane,
glycoprotein, immunoglobulin domain; NMR {Homo sapiens}
Length = 114
Score = 83.3 bits (206), Expect = 2e-19
Identities = 21/99 (21%), Positives = 35/99 (35%), Gaps = 5/99 (5%)
Query: 410 PGPPAAPVIL--NTTRGSVTLGWGEPEPRGGGVAPVIGYTVEYFSSDLQTGWVVAAHRIT 467
P+ P I ++ S L + G AP++ Y V+Y S D + W+ +
Sbjct: 6 MREPSPPSIHGQPSSGKSFKLSI---TKQDDGGAPILEYIVKYRSKDKEDQWLEKKVQGN 62
Query: 468 STSITVSDLKPDTSYMFIVRAENSHGLGIPSPVSPITRT 506
I + L+ Y + A N G P+
Sbjct: 63 KDHIILEHLQWTMGYEVQITAANRLGYSEPTVYEFSMPP 101
Score = 28.3 bits (63), Expect = 3.2
Identities = 4/19 (21%), Positives = 6/19 (31%)
Query: 600 ATTTSYTVTHLRKFTKYEF 618
+ HL+ YE
Sbjct: 61 GNKDHIILEHLQWTMGYEV 79
>2ckn_A Basic fibroblast growth factor receptor 1; kinase, transferase,
heparin-binding, nucleotide-binding, immunoglobulin
domain, alternatice splicing; NMR {Mus musculus}
Length = 95
Score = 82.5 bits (204), Expect = 2e-19
Identities = 20/86 (23%), Positives = 35/86 (40%), Gaps = 1/86 (1%)
Query: 72 PFPISEPSDATVLSGSVVEFVCRVGGDPLPTILWRRDDGKMPTGRAKILDDRSLQIENVG 131
E V G +++ CR+ D +I W RD ++ + +++ +
Sbjct: 10 WGVPVEVESLLVHPGDLLQLRCRLRDDV-QSINWLRDGVQLVESNRTRITGEEVEVRDSI 68
Query: 132 PQDEGLYICDVENLVGSISLRASLTV 157
P D GLY C + GS + S+ V
Sbjct: 69 PADSGLYACVTSSPSGSDTTYFSVNV 94
Score = 56.3 bits (136), Expect = 3e-10
Identities = 15/74 (20%), Positives = 29/74 (39%), Gaps = 7/74 (9%)
Query: 259 RLSCFAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSAL 318
+L C S+ W ++G Q++ +T + ++ D+G + C
Sbjct: 28 QLRCRLRDDV-QSINWLRDGVQLV-----ESNRTRITG-EEVEVRDSIPADSGLYACVTS 80
Query: 319 SVAGSTTVRAFLQV 332
S +GS T + V
Sbjct: 81 SPSGSDTTYFSVNV 94
Score = 42.5 bits (100), Expect = 2e-05
Identities = 13/29 (44%), Positives = 16/29 (55%)
Query: 363 DLRETDSGLYTCTASSESGETSWSASLSV 391
D DSGLY C SS SG + S++V
Sbjct: 66 DSIPADSGLYACVTSSPSGSDTTYFSVNV 94
Score = 41.3 bits (97), Expect = 5e-05
Identities = 10/62 (16%), Positives = 20/62 (32%), Gaps = 4/62 (6%)
Query: 164 FRAEPKDTRVASGETALLECGPPKGQPEPTLHWKKNGQFIDLESSKSLDLSRRTLGWLRV 223
E + V G+ L C +++W ++G L S ++ +
Sbjct: 12 VPVEVESLLVHPGDLLQLRC--RLRDDVQSINWLRDGV--QLVESNRTRITGEEVEVRDS 67
Query: 224 RP 225
P
Sbjct: 68 IP 69
>3bp6_B Programmed cell death 1 ligand 2; PD-1, PD-L2, complex,
costimulation, glycoprotein, immunoglo domain, membrane,
transmembrane, receptor; 1.60A {Mus musculus} PDB:
3bp5_B 3rnq_B 3bov_A 3rnk_B
Length = 202
Score = 85.9 bits (212), Expect = 2e-19
Identities = 33/167 (19%), Positives = 59/167 (35%), Gaps = 17/167 (10%)
Query: 73 FPISEPSDA-TVLSGSVVEFVCRVGGDPLPTILWRR-------DDGKMPTGRAKILDDR- 123
F ++ P + TV GS V C + R +D + + RA +L+++
Sbjct: 3 FTVTAPKEVYTVDVGSSVSLECDFDRRECTELEGIRASLQKVENDTSLQSERATLLEEQL 62
Query: 124 -----SLQIENVGPQDEGLYICDVENLVGSISLRASLTVHLLRDDFRAEPKDTRVASGET 178
I +V +D G Y C V LTV + R + + V
Sbjct: 63 PLGKALFHIPSVQVRDSGQYRCLVICGAAWDY--KYLTVKVKASYMRIDTRILEVPGTGE 120
Query: 179 ALLECGPPKGQPEPTLHWKKNGQFIDLESSKSLDLSRRTLGWLRVRP 225
L C +G P + W+ + ++ + + LR++P
Sbjct: 121 VQLTC-QARGYPLAEVSWQNVSVPANTSHIRTPEGLYQVTSVLRLKP 166
Score = 54.3 bits (130), Expect = 1e-08
Identities = 23/176 (13%), Positives = 42/176 (23%), Gaps = 38/176 (21%)
Query: 260 LSCFAEGSPLPSV-----FWTQEGSQVLMFPGNAYGHLHVTQEG--TLRIQGVQKEDAGF 312
L C + + + + + A G I VQ D+G
Sbjct: 22 LECDFDRRECTELEGIRASLQKVENDTSLQSERATLLEEQLPLGKALFHIPSVQVRDSGQ 81
Query: 313 FVCSALSVAGSTTVRAFLQVREFCVLPKGTFTLGQPN-------LATG------------ 353
+ C + A ++V+ + A G
Sbjct: 82 YRCLVICGAAWDYKYLTVKVKASYMRIDTRILEVPGTGEVQLTCQARGYPLAEVSWQNVS 141
Query: 354 ---NSDLRRIA---------CDLRETDSGLYTCTASSESGETSWSASLSVEPRPGP 397
N+ R L+ S ++C + + SA + R P
Sbjct: 142 VPANTSHIRTPEGLYQVTSVLRLKPQPSRNFSCMFWNAHMKELTSAIIDPLSRMEP 197
Score = 53.5 bits (128), Expect = 2e-08
Identities = 19/105 (18%), Positives = 31/105 (29%), Gaps = 9/105 (8%)
Query: 71 KPFPISEPSDATVLSGSVVEFVCRVGGDPLPTILWRRDDGKMPTGRAKILDDRSLQIE-- 128
+ + V V+ C+ G PL + W+ T + + Q+
Sbjct: 103 ASYMRIDTRILEVPGTGEVQLTCQARGYPLAEVSWQNVSVPANTSHIRT-PEGLYQVTSV 161
Query: 129 -NVGPQDEGLYICDVENLVGSISLRASLTVHLLRDDFRAEPKDTR 172
+ PQ + C N A + R EPK R
Sbjct: 162 LRLKPQPSRNFSCMFWNAHMKELTSAIIDPL-----SRMEPKVPR 201
Score = 50.0 bits (119), Expect = 4e-07
Identities = 30/195 (15%), Positives = 55/195 (28%), Gaps = 35/195 (17%)
Query: 168 PKDTRVAS-GETALLECGPPKGQPEPTLHWKKNGQFIDLE-----------SSKSLDLSR 215
PK+ G + LEC + L + + L L +
Sbjct: 8 PKEVYTVDVGSSVSLECDFD-RRECTELEGIRASLQKVENDTSLQSERATLLEEQLPLGK 66
Query: 216 RTLGWLRVRP----LYWNVARPRANLNPRYIGRKMASLLIWNHPRVN--------RLSCF 263
V+ Y + A + +Y+ K+ + + R+ +L+C
Sbjct: 67 ALFHIPSVQVRDSGQYRCLVICGAAWDYKYLTVKVKASYMRIDTRILEVPGTGEVQLTCQ 126
Query: 264 AEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQG---VQKEDAGFFVCSALSV 320
A G PL V W A T EG ++ ++ + + F C +
Sbjct: 127 ARGYPLAEVSWQNVS-------VPANTSHIRTPEGLYQVTSVLRLKPQPSRNFSCMFWNA 179
Query: 321 AGSTTVRAFLQVREF 335
A +
Sbjct: 180 HMKELTSAIIDPLSR 194
Score = 30.4 bits (68), Expect = 1.5
Identities = 16/97 (16%), Positives = 28/97 (28%), Gaps = 7/97 (7%)
Query: 315 CSALSVAGSTTVR----AFLQVREFCVLPKGTFTLGQPNLATGNSDLRRIACDLRETDSG 370
C T + + +V L TL + L G + I ++ DSG
Sbjct: 24 CD-FDRRECTELEGIRASLQKVENDTSLQSERATLLEEQLPLGKALFH-IP-SVQVRDSG 80
Query: 371 LYTCTASSESGETSWSASLSVEPRPGPHAVHRMPDSG 407
Y C + ++ V+ + G
Sbjct: 81 QYRCLVICGAAWDYKYLTVKVKASYMRIDTRILEVPG 117
>1g1c_A Immunoglobulin-like domain I1 from titin; immunoglobulin domain,
beta-sandwhich, I-SET, structural protein; 2.10A {Homo
sapiens} SCOP: b.1.1.4
Length = 99
Score = 82.7 bits (205), Expect = 2e-19
Identities = 23/89 (25%), Positives = 31/89 (34%), Gaps = 5/89 (5%)
Query: 75 ISEPSDATVLSGSVVEFVCRVGGDPLPTILWRRDDGKM-PTGRAKILDDR----SLQIEN 129
TV GS F RV G P P W ++ K+ + R L I +
Sbjct: 9 FERIQSQTVGQGSDAHFRVRVVGKPDPECEWYKNGVKIERSDRIYWYWPEDNVCELVIRD 68
Query: 130 VGPQDEGLYICDVENLVGSISLRASLTVH 158
V +D + N+ G S A L V
Sbjct: 69 VTGEDSASIMVKAINIAGETSSHAFLLVQ 97
Score = 59.2 bits (144), Expect = 3e-11
Identities = 18/80 (22%), Positives = 31/80 (38%), Gaps = 9/80 (11%)
Query: 259 RLSCFAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEG----TLRIQGVQKEDAGFFV 314
G P P W + G ++ ++ L I+ V ED+ +
Sbjct: 24 HFRVRVVGKPDPECEWYKNGVKI-----ERSDRIYWYWPEDNVCELVIRDVTGEDSASIM 78
Query: 315 CSALSVAGSTTVRAFLQVRE 334
A+++AG T+ AFL V+
Sbjct: 79 VKAINIAGETSSHAFLLVQA 98
Score = 42.6 bits (101), Expect = 2e-05
Identities = 11/32 (34%), Positives = 16/32 (50%)
Query: 363 DLRETDSGLYTCTASSESGETSWSASLSVEPR 394
D+ DS A + +GETS A L V+ +
Sbjct: 68 DVTGEDSASIMVKAINIAGETSSHAFLLVQAK 99
Score = 41.9 bits (99), Expect = 4e-05
Identities = 11/41 (26%), Positives = 15/41 (36%), Gaps = 1/41 (2%)
Query: 164 FRAEPKDTRVASGETALLECGPPKGQPEPTLHWKKNGQFID 204
+ V G A G+P+P W KNG I+
Sbjct: 8 IFERIQSQTVGQGSDAHFRV-RVVGKPDPECEWYKNGVKIE 47
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA,
receptor-ligand complex transferase; HET: NAG NDG MAN
BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Length = 347
Score = 89.0 bits (220), Expect = 2e-19
Identities = 30/136 (22%), Positives = 47/136 (34%), Gaps = 9/136 (6%)
Query: 72 PFPISEPSDATVLSGSVVEFVCRVGGDPLPTILWRRDDGKMP--TGRAKILDDRSLQIEN 129
P + +A+V G V C+V G L W + + ++ L L + N
Sbjct: 159 PTLKVQVPNASVDVGDDVLLRCQVEGRGLEQAGWILTELEQSATVMKSGGLPSLGLTLAN 218
Query: 130 V-GPQDEGLYICDVENLVGSISLRASLTVHLLRDDFRAEPKDTRVASGETALLECGPPKG 188
V + C EN VG + + V F A + + G
Sbjct: 219 VTSDLNRKNVTCWAENDVGRAEVSVQVNVS-----FPASVQLHTAVEMHHWCIPF-SVDG 272
Query: 189 QPEPTLHWKKNGQFID 204
QP P+L W NG ++
Sbjct: 273 QPAPSLRWLFNGSVLN 288
Score = 85.2 bits (210), Expect = 4e-18
Identities = 28/189 (14%), Positives = 48/189 (25%), Gaps = 20/189 (10%)
Query: 163 DFRAEPKDTRVASGETALLECGPPKGQPEPTLHWKKNGQFIDLESSKSLDLSRRTLGWLR 222
+ + + V G+ LL C +G+ W KS L L
Sbjct: 160 TLKVQVPNASVDVGDDVLLRC-QVEGRGLEQAGWILTELEQSATVMKSGGLPSLGLTLAN 218
Query: 223 VRPLY---------WNVA---RPRANLNPRYIGRKMASLLIWNHPRVNRLSCFAEGSPLP 270
V N +N + + H + +G P P
Sbjct: 219 VTSDLNRKNVTCWAENDVGRAEVSVQVNVSFPASVQLHTAVEMH--HWCIPFSVDGQPAP 276
Query: 271 SVFWTQEGSQVLMFP-----GNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTT 325
S+ W GS + + G LR+ + G + A + G +
Sbjct: 277 SLRWLFNGSVLNETSFIFTEFLEPAANETVRHGCLRLNQPTHVNNGNYTLLAANPFGQAS 336
Query: 326 VRAFLQVRE 334
+
Sbjct: 337 ASIMAAFMD 345
Score = 70.5 bits (172), Expect = 3e-13
Identities = 12/104 (11%), Positives = 24/104 (23%), Gaps = 11/104 (10%)
Query: 66 KEALIKPFPISEPSDATVLSGSVVEFVCRVGGDPLPTILWRRDDGKMP-----------T 114
+ + T + V G P P++ W + +
Sbjct: 241 VSVQVNVSFPASVQLHTAVEMHHWCIPFSVDGQPAPSLRWLFNGSVLNETSFIFTEFLEP 300
Query: 115 GRAKILDDRSLQIENVGPQDEGLYICDVENLVGSISLRASLTVH 158
+ + L++ + G Y N G S
Sbjct: 301 AANETVRHGCLRLNQPTHVNNGNYTLLAANPFGQASASIMAAFM 344
Score = 64.8 bits (157), Expect = 2e-11
Identities = 23/173 (13%), Positives = 37/173 (21%), Gaps = 40/173 (23%)
Query: 260 LSCFAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALS 319
L C EG L W + + G + C A +
Sbjct: 178 LRCQVEGRGLEQAGWILTELEQ---SATVMKSGGLPSLGLTLANVTSDLNRKNVTCWAEN 234
Query: 320 VAGSTTVRAFLQVREFCV----------------------------LPKGTFTLGQPNLA 351
G V + V L G+ +
Sbjct: 235 DVGRAEVSVQVNVSFPASVQLHTAVEMHHWCIPFSVDGQPAPSLRWLFNGSVLNETSFIF 294
Query: 352 TGNSDLRRIAC---------DLRETDSGLYTCTASSESGETSWSASLSVEPRP 395
T + ++G YT A++ G+ S S + P
Sbjct: 295 TEFLEPAANETVRHGCLRLNQPTHVNNGNYTLLAANPFGQASASIMAAFMDNP 347
Score = 35.5 bits (81), Expect = 0.041
Identities = 8/56 (14%), Positives = 17/56 (30%), Gaps = 3/56 (5%)
Query: 349 NLATGNSDLRRIACDLRETDSGLYTCTASSESGETSWSASLSVEPRPGPHAVHRMP 404
L + L + + + TC A ++ G S ++V +
Sbjct: 208 GLPSLGLTLANVT---SDLNRKNVTCWAENDVGRAEVSVQVNVSFPASVQLHTAVE 260
>1f2q_A High affinity immunoglobulin epsilon receptor ALP subunit;
immunoglobulin fold, glycoprotein, IGE-binding Pro
immune system; HET: NAG MAN; 2.40A {Homo sapiens} SCOP:
b.1.1.4 b.1.1.4 PDB: 1j86_A* 1rpq_A* 2y7q_A* 1f6a_A*
1j88_A* 1j89_A* 1j87_A*
Length = 176
Score = 84.9 bits (210), Expect = 3e-19
Identities = 23/141 (16%), Positives = 41/141 (29%), Gaps = 11/141 (7%)
Query: 71 KPFPISEPSDATVLSGSVVEFVCRVGGDPLP-TILWRRDDGKMPTGRAKILDDRSLQIEN 129
KP P + G V C + W + + SL I N
Sbjct: 4 KPKVSLNPPWNRIFKGENVTLTCNGNNFFEVSSTKWFHNGSLSEE------TNSSLNIVN 57
Query: 130 VGPQDEGLYICDVENLVGSISLRASLTVHLLRDDFRAEPKDTRVASGETALLECGPPKGQ 189
+D G Y C + + S + + + D + V G+ L C +
Sbjct: 58 AKFEDSGEYKCQHQQVNES----EPVYLEVFSDWLLLQASAEVVMEGQPLFLRCHGWRNW 113
Query: 190 PEPTLHWKKNGQFIDLESSKS 210
+ + K+G+ +
Sbjct: 114 DVYKVIYYKDGEALKYWYENH 134
Score = 60.7 bits (147), Expect = 6e-11
Identities = 14/87 (16%), Positives = 32/87 (36%), Gaps = 6/87 (6%)
Query: 74 PISEPSDATVLSGSVVEFVCRV-GGDPLPTILWRRDDGKMPTGRAKILDDRSLQIENVGP 132
+ + S V+ G + C + +++ +D + ++ ++ I N
Sbjct: 88 LLLQASAEVVMEGQPLFLRCHGWRNWDVYKVIYYKDGEALKYWY----ENHNISITNATV 143
Query: 133 QDEGLYICDVENLVGSI-SLRASLTVH 158
+D G Y C + S ++TV
Sbjct: 144 EDSGTYYCTGKVWQLDYESEPLNITVI 170
Score = 59.1 bits (143), Expect = 2e-10
Identities = 30/179 (16%), Positives = 52/179 (29%), Gaps = 28/179 (15%)
Query: 167 EPKDTRVASGETALLECGPPKGQPEPTLHWKKNGQFIDLESSKSLDLSRRTL---GWLRV 223
P R+ GE L C + W NG + E++ SL++ G
Sbjct: 10 NPPWNRIFKGENVTLTCNGNNFFEVSSTKWFHNGSLSE-ETNSSLNIVNAKFEDSGE--- 65
Query: 224 RPLYWNVARPRANLNPRYIGRKMASLLIWNHPRVNR------LSCFAE-GSPLPSVFWTQ 276
Y + P Y+ LL+ V L C + V + +
Sbjct: 66 ---YKCQHQQVNESEPVYLEVFSDWLLLQASAEVVMEGQPLFLRCHGWRNWDVYKVIYYK 122
Query: 277 EGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVR-AFLQVRE 334
+G + + N + I ED+G + C+ + V +
Sbjct: 123 DGEALKYWYEN----------HNISITNATVEDSGTYYCTGKVWQLDYESEPLNITVIK 171
Score = 51.0 bits (122), Expect = 1e-07
Identities = 31/164 (18%), Positives = 44/164 (26%), Gaps = 42/164 (25%)
Query: 260 LSCFAEGSPLP-SVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSAL 318
L+C S W G L +L I + ED+G + C
Sbjct: 24 LTCNGNNFFEVSSTKWFHNG------------SLSEETNSSLNIVNAKFEDSGEYKCQHQ 71
Query: 319 SVAGSTTVR-------AFLQVREFCVLPKGTFTL------------------GQP-NLAT 352
V S V LQ V+ L G+
Sbjct: 72 QVNESEPVYLEVFSDWLLLQASAEVVMEGQPLFLRCHGWRNWDVYKVIYYKDGEALKYWY 131
Query: 353 GNSDLRRIACDLRETDSGLYTCTASSESG-ETSWSASLSVEPRP 395
N ++ I + DSG Y CT S +++V P
Sbjct: 132 ENHNIS-IT-NATVEDSGTYYCTGKVWQLDYESEPLNITVIKAP 173
>1u2h_A APEG-1, aortic preferentially expressed protein 1; structural
genomics, IG-fold I-SET, RGD motif, homophilic adhesion,
arterial smooth muscle cells; 0.96A {Homo sapiens}
Length = 99
Score = 81.6 bits (202), Expect = 4e-19
Identities = 22/88 (25%), Positives = 31/88 (35%), Gaps = 5/88 (5%)
Query: 75 ISEPSDATVLSGSVVEFVCRVGGDPLPTILWRRDDGKMPTGRAKIL-----DDRSLQIEN 129
D +V G V RV G+P P + W R+ + + + L+I
Sbjct: 9 KVSLMDQSVREGQDVIMSIRVQGEPKPVVSWLRNRQPVRPDQRRFAEEAEGGLCRLRILA 68
Query: 130 VGPQDEGLYICDVENLVGSISLRASLTV 157
D G Y C N G+ A L V
Sbjct: 69 AERGDAGFYTCKAVNEYGARQCEARLEV 96
Score = 66.1 bits (162), Expect = 1e-13
Identities = 23/78 (29%), Positives = 33/78 (42%), Gaps = 7/78 (8%)
Query: 259 RLSCFAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEG---TLRIQGVQKEDAGFFVC 315
+S +G P P V W + V EG LRI ++ DAGF+ C
Sbjct: 24 IMSIRVQGEPKPVVSWLRNRQPVRPDQR----RFAEEAEGGLCRLRILAAERGDAGFYTC 79
Query: 316 SALSVAGSTTVRAFLQVR 333
A++ G+ A L+VR
Sbjct: 80 KAVNEYGARQCEARLEVR 97
Score = 45.7 bits (109), Expect = 2e-06
Identities = 10/41 (24%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
Query: 164 FRAEPKDTRVASGETALLECGPPKGQPEPTLHWKKNGQFID 204
F+ D V G+ ++ +G+P+P + W +N Q +
Sbjct: 8 FKVSLMDQSVREGQDVIMSI-RVQGEPKPVVSWLRNRQPVR 47
Score = 42.3 bits (100), Expect = 3e-05
Identities = 11/30 (36%), Positives = 13/30 (43%)
Query: 363 DLRETDSGLYTCTASSESGETSWSASLSVE 392
D+G YTC A +E G A L V
Sbjct: 68 AAERGDAGFYTCKAVNEYGARQCEARLEVR 97
>2v9t_A Roundabout homolog 1; structural protein-receptor complex,
developmental protein, domain, roundabout, chemotaxis,
LRR domain; 1.70A {Homo sapiens}
Length = 117
Score = 81.8 bits (202), Expect = 6e-19
Identities = 28/103 (27%), Positives = 38/103 (36%), Gaps = 12/103 (11%)
Query: 75 ISEPSDATVLSGSVVEFVCRVGGDPLPTILWRRDDGKMPT------GRAKILDDRSLQIE 128
+ PSD V G C+ G P PTI W + ++ T +L SL
Sbjct: 13 VEHPSDLIVSKGEPATLNCKAEGRPTPTIEWYKGGERVETDKDDPRSHRMLLPSGSLFFL 72
Query: 129 NV-----GPQDEGLYICDVENLVGSI-SLRASLTVHLLRDDFR 165
+ DEG+Y+C N +G S ASL V
Sbjct: 73 RIVHGRKSRPDEGVYVCVARNYLGEAVSHDASLEVAAAAHHHH 115
Score = 60.6 bits (147), Expect = 2e-11
Identities = 22/80 (27%), Positives = 36/80 (45%), Gaps = 6/80 (7%)
Query: 259 RLSCFAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQ-----KEDAGFF 313
L+C AEG P P++ W + G +V + H + G+L + + D G +
Sbjct: 28 TLNCKAEGRPTPTIEWYKGGERVETDKDDPRSHRMLLPSGSLFFLRIVHGRKSRPDEGVY 87
Query: 314 VCSALSVAGS-TTVRAFLQV 332
VC A + G + A L+V
Sbjct: 88 VCVARNYLGEAVSHDASLEV 107
Score = 51.0 bits (122), Expect = 4e-08
Identities = 15/47 (31%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
Query: 164 FRAEPKDTRVASGETALLECGPPKGQPEPTLHWKKNGQFIDLESSKS 210
P D V+ GE A L C +G+P PT+ W K G+ ++ +
Sbjct: 12 IVEHPSDLIVSKGEPATLNCKA-EGRPTPTIEWYKGGERVETDKDDP 57
>2db8_A Tripartite motif protein 9, isoform 2; ring finger protein 91,
TRIM9, KIAA0282, RNF91, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 110
Score = 81.3 bits (201), Expect = 8e-19
Identities = 25/99 (25%), Positives = 36/99 (36%), Gaps = 9/99 (9%)
Query: 410 PGPPAAPVIL----NTTRGSVTLGWGEPEPRGGGVAPVIGYTVEYFSSDLQTGWVVAAHR 465
PA P++ T S TL W +P P GY +E D G +
Sbjct: 7 GPVPATPILQLEECCTHNNSATLSWKQPPLSTV---PADGYILEL--DDGNGGQFREVYV 61
Query: 466 ITSTSITVSDLKPDTSYMFIVRAENSHGLGIPSPVSPIT 504
T TV L +++Y V+A N G+ S +
Sbjct: 62 GKETMCTVDGLHFNSTYNARVKAFNKTGVSPYSKTLVLQ 100
Score = 28.2 bits (63), Expect = 2.7
Identities = 5/18 (27%), Positives = 6/18 (33%)
Query: 601 TTTSYTVTHLRKFTKYEF 618
T TV L + Y
Sbjct: 63 KETMCTVDGLHFNSTYNA 80
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG
containing, ligand binding protein,membr protein; HET:
NAG MAN; 2.70A {Homo sapiens}
Length = 477
Score = 88.6 bits (220), Expect = 8e-19
Identities = 29/87 (33%), Positives = 40/87 (45%), Gaps = 4/87 (4%)
Query: 76 SEPSDATVLSGSVVEFVCRVGGDPLPTILWRRDDGKMPT----GRAKILDDRSLQIENVG 131
+ V G V+FVCR GDP P ILW + + GR + D +L++
Sbjct: 390 RKAQQVFVDEGHTVQFVCRADGDPPPAILWLSPRKHLVSAKSNGRLTVFPDGTLEVRYAQ 449
Query: 132 PQDEGLYICDVENLVGSISLRASLTVH 158
QD G Y+C N G+ S+ A L V
Sbjct: 450 VQDNGTYLCIAANAGGNDSMPAHLHVR 476
Score = 65.9 bits (161), Expect = 2e-11
Identities = 22/75 (29%), Positives = 39/75 (52%), Gaps = 2/75 (2%)
Query: 259 RLSCFAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSAL 318
+ C A+G P P++ W + + + G L V +GTL ++ Q +D G ++C A
Sbjct: 404 QFVCRADGDPPPAILWLS--PRKHLVSAKSNGRLTVFPDGTLEVRYAQVQDNGTYLCIAA 461
Query: 319 SVAGSTTVRAFLQVR 333
+ G+ ++ A L VR
Sbjct: 462 NAGGNDSMPAHLHVR 476
Score = 38.2 bits (89), Expect = 0.007
Identities = 10/29 (34%), Positives = 14/29 (48%)
Query: 363 DLRETDSGLYTCTASSESGETSWSASLSV 391
+ D+G Y C A++ G S A L V
Sbjct: 447 YAQVQDNGTYLCIAANAGGNDSMPAHLHV 475
Score = 33.5 bits (77), Expect = 0.23
Identities = 9/43 (20%), Positives = 15/43 (34%), Gaps = 2/43 (4%)
Query: 167 EPKDTRVASGETALLECGPPKGQPEPTLHWKK-NGQFIDLESS 208
+ + V G T C G P P + W + +S+
Sbjct: 391 KAQQVFVDEGHTVQFVC-RADGDPPPAILWLSPRKHLVSAKSN 432
>3qp3_A Titin; I-SET IG-like, sarcomere, M-BAND, transferase; 2.00A {Homo
sapiens}
Length = 103
Score = 80.4 bits (199), Expect = 1e-18
Identities = 17/88 (19%), Positives = 29/88 (32%), Gaps = 4/88 (4%)
Query: 75 ISEPSDATVLSGSVVEFVCRVGGDPLPTILWRRDDGKM-PTGRAKILDDR---SLQIENV 130
V G F+ V P + W + ++ + + + +L+I +
Sbjct: 12 TLRMRSHRVPCGQNTRFILNVQSKPTAEVKWYHNGVELQESSKIHYTNTSGVLTLEILDC 71
Query: 131 GPQDEGLYICDVENLVGSISLRASLTVH 158
D G Y N G S A+L V
Sbjct: 72 HTDDSGTYRAVCTNYKGEASDYATLDVT 99
Score = 59.6 bits (145), Expect = 3e-11
Identities = 16/78 (20%), Positives = 25/78 (32%), Gaps = 8/78 (10%)
Query: 259 RLSCFAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEG---TLRIQGVQKEDAGFFVC 315
R + P V W G ++ +H T TL I +D+G +
Sbjct: 27 RFILNVQSKPTAEVKWYHNGVEL-----QESSKIHYTNTSGVLTLEILDCHTDDSGTYRA 81
Query: 316 SALSVAGSTTVRAFLQVR 333
+ G + A L V
Sbjct: 82 VCTNYKGEASDYATLDVT 99
Score = 40.4 bits (95), Expect = 1e-04
Identities = 11/46 (23%), Positives = 17/46 (36%), Gaps = 2/46 (4%)
Query: 164 FRAEPKDTRVASGETALLECGPPKGQPEPTLHWKKNGQFIDLESSK 209
+ RV G+ + +P + W NG + ESSK
Sbjct: 11 ITLRMRSHRVPCGQNTRFIL-NVQSKPTAEVKWYHNGVELQ-ESSK 54
>2ch8_A BARF1, P33, 33 kDa early protein; viral protein, immunoglobulin
domain, oncogene; HET: NAG MAN; 2.3A {Epstein-barr
virus}
Length = 201
Score = 83.2 bits (205), Expect = 2e-18
Identities = 18/148 (12%), Positives = 40/148 (27%), Gaps = 13/148 (8%)
Query: 77 EPSDATVLSGSVVEFVCRVGGDPLPTILWRRDDGKMPTGRAKILDDRSLQIENVGPQDEG 136
P + VL G + P + L + +G
Sbjct: 32 GPGEEQVLIGRM-HHDVIFIEWPFRGFFDIHRSA----------NTFFLVVTAANISHDG 80
Query: 137 LYICDVENLVGSISLRASLTVHLLRDDFRAEPKDTRVASGETALLECGPPKGQPEPTLHW 196
Y+C ++ ++ + L+V + ++ + C P P + W
Sbjct: 81 NYLCRMKLGETEVTKQEHLSVV-KPLTLSVHSERSQFPDFSVLTVTC-TVNAFPHPHVQW 138
Query: 197 KKNGQFIDLESSKSLDLSRRTLGWLRVR 224
++ + + + G L V
Sbjct: 139 LMPEGVEPAPTAANGGVMKEKDGSLSVA 166
Score = 72.8 bits (178), Expect = 8e-15
Identities = 15/87 (17%), Positives = 23/87 (26%), Gaps = 8/87 (9%)
Query: 71 KPFPISEPSDATVLSGSVVEFVCRVGGDPLPTILWRRDDGKMP-----TGRAKILDDRSL 125
+ SV+ C V P P + W +G P G D SL
Sbjct: 104 PLTLSVHSERSQFPDFSVLTVTCTVNAFPHPHVQWLMPEGVEPAPTAANGGVMKEKDGSL 163
Query: 126 QI---ENVGPQDEGLYICDVENLVGSI 149
+ ++ C +N
Sbjct: 164 SVAVDLSLPKPWHLPVTCVGKNDKEEA 190
Score = 61.2 bits (148), Expect = 7e-11
Identities = 20/166 (12%), Positives = 39/166 (23%), Gaps = 41/166 (24%)
Query: 259 RLSCFAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEG---TLRIQGVQKEDAGFFVC 315
+S F G V + V+ G + + L + G ++C
Sbjct: 25 EVSWFKLGPGEEQVLIGRMHHDVIFIEWPFRGFFDIHRSANTFFLVVTAANISHDGNYLC 84
Query: 316 SALSVAGSTTVRAFLQVRE---FCVLPK-------GTFTL-----GQPN----------- 349
T + L V + V + T+ P+
Sbjct: 85 RMKLGETEVTKQEHLSVVKPLTLSVHSERSQFPDFSVLTVTCTVNAFPHPHVQWLMPEGV 144
Query: 350 -----------LATGNSDLR-RIACDLRETDSGLYTCTASSESGET 383
+ + L + L + TC ++ E
Sbjct: 145 EPAPTAANGGVMKEKDGSLSVAVDLSLPKPWHLPVTCVGKNDKEEA 190
Score = 38.9 bits (90), Expect = 0.002
Identities = 7/33 (21%), Positives = 9/33 (27%)
Query: 363 DLRETDSGLYTCTASSESGETSWSASLSVEPRP 395
+ G Y C E + LSV
Sbjct: 73 AANISHDGNYLCRMKLGETEVTKQEHLSVVKPL 105
>2dm2_A Palladin; beta-sandwich, KIAA0992, actin-associated scaffold,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 110
Score = 79.7 bits (197), Expect = 3e-18
Identities = 25/90 (27%), Positives = 33/90 (36%), Gaps = 6/90 (6%)
Query: 75 ISEPSDATVLSGSVVEFVCRVGGDPLPTILWRRDDGKMP--TGRAKILDDR----SLQIE 128
+ + G V F CRV G+P P I W +D ++ + I D SL
Sbjct: 12 EMKLKHYKIFEGMPVTFTCRVAGNPKPKIYWFKDGKQISPKSDHYTIQRDLDGTCSLHTT 71
Query: 129 NVGPQDEGLYICDVENLVGSISLRASLTVH 158
D+G Y N G IS L V
Sbjct: 72 ASTLDDDGNYTIMAANPQGRISCTGRLMVQ 101
Score = 59.3 bits (144), Expect = 4e-11
Identities = 17/83 (20%), Positives = 34/83 (40%), Gaps = 4/83 (4%)
Query: 259 RLSCFAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEG--TLRIQGVQKEDAGFFVCS 316
+C G+P P ++W ++G Q+ P + + + +G +L +D G +
Sbjct: 27 TFTCRVAGNPKPKIYWFKDGKQIS--PKSDHYTIQRDLDGTCSLHTTASTLDDDGNYTIM 84
Query: 317 ALSVAGSTTVRAFLQVREFCVLP 339
A + G + L V+ P
Sbjct: 85 AANPQGRISCTGRLMVQAVNSGP 107
Score = 46.2 bits (110), Expect = 2e-06
Identities = 12/40 (30%), Positives = 16/40 (40%), Gaps = 6/40 (15%)
Query: 368 DSGLYTCTASSESGETSWSASLSVEPRPGPHAVHRMPDSG 407
D G YT A++ G S + L V+ P SG
Sbjct: 77 DDGNYTIMAANPQGRISCTGRLMVQAVNSG------PSSG 110
Score = 45.8 bits (109), Expect = 2e-06
Identities = 12/46 (26%), Positives = 21/46 (45%), Gaps = 1/46 (2%)
Query: 164 FRAEPKDTRVASGETALLECGPPKGQPEPTLHWKKNGQFIDLESSK 209
F + K ++ G C G P+P ++W K+G+ I +S
Sbjct: 11 FEMKLKHYKIFEGMPVTFTC-RVAGNPKPKIYWFKDGKQISPKSDH 55
>2cqv_A MLCK, myosin light chain kinase, smooth muscle and non- muscle
isozymes; IG fold, structural genomics, NPPSFA; NMR
{Homo sapiens} SCOP: b.1.1.4
Length = 114
Score = 79.7 bits (197), Expect = 3e-18
Identities = 24/87 (27%), Positives = 35/87 (40%), Gaps = 4/87 (4%)
Query: 75 ISEPSDATVLSGSVVEFVCRVGGDPLPTILWRRDDGK-MPTGRAKIL---DDRSLQIENV 130
I P D V +G VE +V G T W + + + K+ + L I
Sbjct: 11 IQFPEDQKVRAGESVELFGKVTGTQPITCTWMKFRKQIQESEHMKVENSENGSKLTILAA 70
Query: 131 GPQDEGLYICDVENLVGSISLRASLTV 157
+ G Y VEN +GS + +LTV
Sbjct: 71 RQEHCGCYTLLVENKLGSRQAQVNLTV 97
Score = 56.6 bits (137), Expect = 5e-10
Identities = 17/87 (19%), Positives = 28/87 (32%), Gaps = 8/87 (9%)
Query: 259 RLSCFAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEG---TLRIQGVQKEDAGFFVC 315
L G+ + W + Q+ H+ V L I ++E G +
Sbjct: 26 ELFGKVTGTQPITCTWMKFRKQI-----QESEHMKVENSENGSKLTILAARQEHCGCYTL 80
Query: 316 SALSVAGSTTVRAFLQVREFCVLPKGT 342
+ GS + L V + P GT
Sbjct: 81 LVENKLGSRQAQVNLTVVDKPDPPAGT 107
Score = 46.2 bits (110), Expect = 2e-06
Identities = 12/46 (26%), Positives = 18/46 (39%), Gaps = 1/46 (2%)
Query: 363 DLRETDSGLYTCTASSESGETSWSASLSVEPRPG-PHAVHRMPDSG 407
R+ G YT ++ G +L+V +P P P SG
Sbjct: 69 AARQEHCGCYTLLVENKLGSRQAQVNLTVVDKPDPPAGTPSGPSSG 114
Score = 43.1 bits (102), Expect = 2e-05
Identities = 10/38 (26%), Positives = 15/38 (39%), Gaps = 1/38 (2%)
Query: 164 FRAEPKDTRVASGETALLECGPPKGQPEPTLHWKKNGQ 201
P+D +V +GE+ L G T W K +
Sbjct: 10 IIQFPEDQKVRAGESVELFG-KVTGTQPITCTWMKFRK 46
>2e7h_A Ephrin type-B receptor 4; FN3 domain, tyrosine- protein kinase
receptor HTK, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 109
Score = 79.4 bits (196), Expect = 4e-18
Identities = 20/95 (21%), Positives = 34/95 (35%), Gaps = 3/95 (3%)
Query: 410 PGPPAAPVILNTTRGSVTLGWGEPEPRGGGVAPVIGYTVEYFSSDLQTGWVVAAHRITST 469
P + + ++ S++L W P G V+ Y V+Y + V + +
Sbjct: 8 PPAVSDIRVTRSSPSSLSLAWAVPRAPSG---AVLDYEVKYHEKGAEGPSSVRFLKTSEN 64
Query: 470 SITVSDLKPDTSYMFIVRAENSHGLGIPSPVSPIT 504
+ LK SY+ VRA + G G
Sbjct: 65 RAELRGLKRGASYLVQVRARSEAGYGPFGQEHHSQ 99
>3bfo_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1
(isoform 2); hydrolase, immunoglobulin domain, nucleus,
protease; 1.15A {Homo sapiens}
Length = 91
Score = 78.5 bits (194), Expect = 4e-18
Identities = 19/93 (20%), Positives = 36/93 (38%), Gaps = 6/93 (6%)
Query: 71 KPFPISEPSDATVLSGSVVEFVCRVGGDPLPTILWRRDDGKMPTGRAKILDDRSLQIENV 130
K EP+ ++ GS + C G P+P W +++ + + + V
Sbjct: 3 KLQICVEPTSQKLMPGSTLVLQCVAVGSPIPHYQWFKNELPLTHE-----TKKLYMVPYV 57
Query: 131 GPQDEGLYICDVENLVGSI-SLRASLTVHLLRD 162
+ +G Y C V N S S + + + L +
Sbjct: 58 DLEHQGTYWCHVYNDRDSQDSKKVEIIIDELNN 90
Score = 49.6 bits (119), Expect = 6e-08
Identities = 14/52 (26%), Positives = 21/52 (40%), Gaps = 1/52 (1%)
Query: 164 FRAEPKDTRVASGETALLECGPPKGQPEPTLHWKKNGQFIDLESSKSLDLSR 215
EP ++ G T +L+C G P P W KN + E+ K +
Sbjct: 6 ICVEPTSQKLMPGSTLVLQCVAV-GSPIPHYQWFKNELPLTHETKKLYMVPY 56
Score = 49.3 bits (118), Expect = 8e-08
Identities = 14/70 (20%), Positives = 21/70 (30%), Gaps = 11/70 (15%)
Query: 259 RLSCFAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSAL 318
L C A GSP+P W + L + + V E G + C
Sbjct: 22 VLQCVAVGSPIPHYQWFKNELP-----------LTHETKKLYMVPYVDLEHQGTYWCHVY 70
Query: 319 SVAGSTTVRA 328
+ S +
Sbjct: 71 NDRDSQDSKK 80
Score = 33.5 bits (77), Expect = 0.029
Identities = 7/49 (14%), Positives = 14/49 (28%), Gaps = 3/49 (6%)
Query: 346 GQPNLATGNSDLRRIACDLRETDSGLYTCTASSESGE-TSWSASLSVEP 393
P L L + + G Y C ++ S + ++
Sbjct: 41 ELP-LTHETKKLYMVP-YVDLEHQGTYWCHVYNDRDSQDSKKVEIIIDE 87
>1wfu_A Unnamed protein product; FN3 domain, similar to 1700007B22RIK
protein, structural genomics, riken structural
genomics/proteomics initiative, RSGI; NMR {Mus musculus}
SCOP: b.1.2.1
Length = 120
Score = 79.6 bits (196), Expect = 4e-18
Identities = 21/100 (21%), Positives = 38/100 (38%), Gaps = 4/100 (4%)
Query: 410 PGPPAAPVILNTTRGSVTLGWGEPEPRGG--GVAPVIGYTVEYFSSDLQTGWVVAAHRIT 467
P PV+ T S+ L W + + +++E + + + V +
Sbjct: 16 LSKPHPPVVGKVTHHSIELYWDLEQKEKRQGPQEQWLRFSIEEEDPKMHS-YGVI-YTGY 73
Query: 468 STSITVSDLKPDTSYMFIVRAENSHGLGIPSPVSPITRTL 507
+T V L+P T Y F ++ + G SPV + T
Sbjct: 74 ATRHVVEGLEPRTLYKFRLKVTSPSGEYEYSPVVSVATTR 113
>3uto_A Twitchin; kinase, muscle sarcomere, transferase; HET: FLC P33;
2.40A {Caenorhabditis elegans} PDB: 1koa_A
Length = 573
Score = 86.4 bits (214), Expect = 7e-18
Identities = 29/97 (29%), Positives = 40/97 (41%), Gaps = 4/97 (4%)
Query: 410 PGPPAAPVILNTTRGSVTLGWGEPEPRGGGVAPVIGYTVEYFSSDLQTGWVVAAHRITST 469
P PP P+I N +V L W P GG + V YT+E + + W A + T
Sbjct: 10 PEPPRFPIIENILDEAVILSWKPPALDGG--SLVTNYTIEKREAMGGS-WSPCA-KSRYT 65
Query: 470 SITVSDLKPDTSYMFIVRAENSHGLGIPSPVSPITRT 506
T+ L+ Y F + AEN HG P +
Sbjct: 66 YTTIEGLRAGKQYEFRIIAENKHGQSKPCEPTAPVLI 102
Score = 67.6 bits (165), Expect = 7e-12
Identities = 24/91 (26%), Positives = 36/91 (39%), Gaps = 4/91 (4%)
Query: 71 KPFPISEPSDATVLSGSVVEFVCRVGGDPLPTILWRRDDGKM-PTGRAKIL---DDRSLQ 126
+P I +P V G F CRV P + W +DD ++ + + +D L
Sbjct: 482 QPRFIVKPYGTEVGEGQSANFYCRVIASSPPVVTWHKDDRELKQSVKYMKRYNGNDYGLT 541
Query: 127 IENVGPQDEGLYICDVENLVGSISLRASLTV 157
I V D+G Y +N G+ L V
Sbjct: 542 INRVKGDDKGEYTVRAKNSYGTKEEIVFLNV 572
Score = 44.4 bits (105), Expect = 1e-04
Identities = 16/74 (21%), Positives = 27/74 (36%), Gaps = 2/74 (2%)
Query: 259 RLSCFAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSAL 318
C S P V W ++ ++ Y + + L I V+ +D G + A
Sbjct: 501 NFYCRVIASSPPVVTWHKDDRELK--QSVKYMKRYNGNDYGLTINRVKGDDKGEYTVRAK 558
Query: 319 SVAGSTTVRAFLQV 332
+ G+ FL V
Sbjct: 559 NSYGTKEEIVFLNV 572
Score = 41.4 bits (97), Expect = 0.001
Identities = 8/30 (26%), Positives = 12/30 (40%)
Query: 362 CDLRETDSGLYTCTASSESGETSWSASLSV 391
++ D G YT A + G L+V
Sbjct: 543 NRVKGDDKGEYTVRAKNSYGTKEEIVFLNV 572
Score = 34.0 bits (78), Expect = 0.18
Identities = 12/46 (26%), Positives = 20/46 (43%), Gaps = 2/46 (4%)
Query: 164 FRAEPKDTRVASGETALLECGPPKGQPEPTLHWKKNGQFIDLESSK 209
F +P T V G++A C P + W K+ + + +S K
Sbjct: 485 FIVKPYGTEVGEGQSANFYCRV-IASSPPVVTWHKDDRELK-QSVK 528
>2ha1_A Fibronectin; beta sandwich, protein-protein complex, rigid BODY
docking, cell adhesion, structural protein; NMR {Homo
sapiens}
Length = 201
Score = 81.2 bits (200), Expect = 8e-18
Identities = 29/220 (13%), Positives = 62/220 (28%), Gaps = 31/220 (14%)
Query: 411 GPPAAPV-ILNTTRGSVTLGWGEPEPRGGGVAPVIGYTVEYFSSDLQTGWVVAAHRITST 469
GP + + S + W P+P + + Y + + + W A
Sbjct: 2 GPVEVFITETPSQPNSHPIQWNAPQP-----SHISKYILRWRPKNSVGRWKEATIPGHLN 56
Query: 470 SITVSDLKPDTSYMFIVRAENSHGLGIPSPVSPITRTLGLNSLVPQHLLDEARARLGTKV 529
S T+ LKP Y + + +G + T T + + E
Sbjct: 57 SYTIKGLKPGVVYEGQLISIQQYGHQEVTRFD-FTTTSTSTPVTSNTVTGETTPFSPLVA 115
Query: 530 VNLRELIPTASTAVRITWEVSWGSVPQHLLDEARARLGTKVVNLRELIPTASTAVRITWE 589
+ + +++ ++W + +V + ++ E
Sbjct: 116 TSES-VTEITASSFVVSWVSASDTVSGFRV-----------------------EYELSEE 151
Query: 590 KYNMATVMNAATTTSYTVTHLRKFTKYEFFLVPFFKTVEG 629
+ +T TS + L KY + + E
Sbjct: 152 GDEPQYLDLPSTATSVNIPDLLPGRKYIVNVYQISEDGEQ 191
Score = 64.3 bits (156), Expect = 5e-12
Identities = 24/136 (17%), Positives = 42/136 (30%), Gaps = 8/136 (5%)
Query: 371 LYTCTASSESGETSWSASLSVEPRPGPHAVHRMPDSGLFPGPPAAPVILNTTRGSVTLGW 430
L + T + + + P + P + + T S + W
Sbjct: 73 LISIQQYGHQEVTRFDFTTTSTSTPVTSNTVTGETTPFSPLVATSESVTEITASSFVVSW 132
Query: 431 GEPEPRGGGVAPVIGYTVEYFSSDLQTGWVVAAHRITSTSITVSDLKPDTSYMFIVRAEN 490
V G+ VEY S+ T+TS+ + DL P Y+ V +
Sbjct: 133 VSAS------DTVSGFRVEYELSEEGDEPQYLDLPSTATSVNIPDLLPGRKYIVNVYQIS 186
Query: 491 SHGLGIPSPVSPITRT 506
G S + ++T
Sbjct: 187 EDGEQ--SLILSTSQT 200
>2ed8_A Netrin receptor DCC; tumor suppressor protein DCC, colorectal
cancer suppressor, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 106
Score = 78.1 bits (193), Expect = 1e-17
Identities = 22/96 (22%), Positives = 36/96 (37%), Gaps = 7/96 (7%)
Query: 410 PGPPAAPVILNTTRGSVTLGWGEPEPRGGGVAPVIGYTVEYFSSDLQTGWVVAAHRITST 469
PGP ++T+ S+ + W P G PV GY + +
Sbjct: 8 PGPVENLQAVSTSPTSILITWEPPAYANG---PVQGYRLFCTEVS---TGKEQNIEVDGL 61
Query: 470 SITVSDLKPDTSYMFIVRAENSHGLGIPS-PVSPIT 504
S + LK T Y A N +G G+ + ++ +T
Sbjct: 62 SYKLEGLKKFTEYSLRFLAYNRYGPGVSTDDITVVT 97
Score = 31.5 bits (72), Expect = 0.19
Identities = 16/68 (23%), Positives = 24/68 (35%), Gaps = 19/68 (27%)
Query: 569 KVVNLRELIPTASTAVRITW------------------EKYNMATVMNAATTTSYTVTHL 610
V NL+ + T+ T++ ITW E SY + L
Sbjct: 10 PVENLQ-AVSTSPTSILITWEPPAYANGPVQGYRLFCTEVSTGKEQNIEVDGLSYKLEGL 68
Query: 611 RKFTKYEF 618
+KFT+Y
Sbjct: 69 KKFTEYSL 76
>1wit_A Twitchin 18TH IGSF module; immunoglobulin superfamily, I SET,
muscle protein; NMR {Caenorhabditis elegans} SCOP:
b.1.1.4 PDB: 1wiu_A
Length = 93
Score = 77.4 bits (191), Expect = 1e-17
Identities = 17/92 (18%), Positives = 28/92 (30%), Gaps = 4/92 (4%)
Query: 70 IKPFPISEPSDATVLSGSVVEFVCRVGGDPLPTILWRRDDGKMP-TGRAKIL---DDRSL 125
+KP ++ + +G G P PT W D + S+
Sbjct: 1 LKPKILTASRKIKIKAGFTHNLEVDFIGAPDPTATWTVGDSGAALAPELLVDAKSSTTSI 60
Query: 126 QIENVGPQDEGLYICDVENLVGSISLRASLTV 157
+ D G Y V+N +G + V
Sbjct: 61 FFPSAKRADSGNYKLKVKNELGEDEAIFEVIV 92
Score = 58.1 bits (141), Expect = 7e-11
Identities = 13/78 (16%), Positives = 25/78 (32%), Gaps = 8/78 (10%)
Query: 259 RLSCFAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEG---TLRIQGVQKEDAGFFVC 315
L G+P P+ WT S L V + ++ ++ D+G +
Sbjct: 21 NLEVDFIGAPDPTATWTVGDSGA-----ALAPELLVDAKSSTTSIFFPSAKRADSGNYKL 75
Query: 316 SALSVAGSTTVRAFLQVR 333
+ G + V+
Sbjct: 76 KVKNELGEDEAIFEVIVQ 93
Score = 44.6 bits (106), Expect = 4e-06
Identities = 10/44 (22%), Positives = 15/44 (34%), Gaps = 1/44 (2%)
Query: 164 FRAEPKDTRVASGETALLECGPPKGQPEPTLHWKKNGQFIDLES 207
+ ++ +G T LE G P+PT W L
Sbjct: 5 ILTASRKIKIKAGFTHNLEV-DFIGAPDPTATWTVGDSGAALAP 47
Score = 38.8 bits (91), Expect = 4e-04
Identities = 8/30 (26%), Positives = 12/30 (40%)
Query: 363 DLRETDSGLYTCTASSESGETSWSASLSVE 392
+ DSG Y +E GE + V+
Sbjct: 64 SAKRADSGNYKLKVKNELGEDEAIFEVIVQ 93
>2dav_A SLOW MYBP-C, myosin-binding protein C, SLOW-type; IG domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
b.1.1.4
Length = 126
Score = 78.5 bits (193), Expect = 1e-17
Identities = 24/100 (24%), Positives = 33/100 (33%), Gaps = 16/100 (16%)
Query: 75 ISEPSDATVLSGSVVEFVCRVGGDPL---PTILWRRDDG-------------KMPTGRAK 118
I +P TV G + F+ +V + L PTI W + K R
Sbjct: 11 IEKPQGGTVKVGEDITFIAKVKAEDLLRKPTIKWFKGKWMDLASKAGKHLQLKETFERHS 70
Query: 119 ILDDRSLQIENVGPQDEGLYICDVENLVGSISLRASLTVH 158
+ +QI G Y C+V S L VH
Sbjct: 71 RVYTFEMQIIKAKDNFAGNYRCEVTYKDKFDSCSFDLEVH 110
Score = 46.5 bits (110), Expect = 2e-06
Identities = 11/46 (23%), Positives = 17/46 (36%), Gaps = 1/46 (2%)
Query: 363 DLRETDSGLYTCTASSESGETSWSASLSVEPRPG-PHAVHRMPDSG 407
++ +G Y C + + S S L V G + P SG
Sbjct: 81 KAKDNFAGNYRCEVTYKDKFDSCSFDLEVHESTGTTPNIDSGPSSG 126
Score = 44.6 bits (105), Expect = 7e-06
Identities = 13/86 (15%), Positives = 24/86 (27%), Gaps = 10/86 (11%)
Query: 259 RLSCFAEGSPL---PSVFWTQEGSQVLMFPGNAYGHLHVT-------QEGTLRIQGVQKE 308
+ L P++ W + L + L T ++I +
Sbjct: 26 TFIAKVKAEDLLRKPTIKWFKGKWMDLASKAGKHLQLKETFERHSRVYTFEMQIIKAKDN 85
Query: 309 DAGFFVCSALSVAGSTTVRAFLQVRE 334
AG + C + L+V E
Sbjct: 86 FAGNYRCEVTYKDKFDSCSFDLEVHE 111
Score = 34.2 bits (78), Expect = 0.035
Identities = 9/41 (21%), Positives = 13/41 (31%), Gaps = 4/41 (9%)
Query: 164 FRAEPKDTRVASGETALLEC---GPPKGQPEPTLHWKKNGQ 201
F +P+ V GE + PT+ W K
Sbjct: 10 FIEKPQGGTVKVGEDITFIAKVKAEDLLRK-PTIKWFKGKW 49
>1wfo_A Sidekick 2; FN3, cell adhesion, structural genomics, riken
structural genomics/proteomics initiative, RSGI; NMR
{Homo sapiens} SCOP: b.1.2.1
Length = 130
Score = 78.6 bits (194), Expect = 1e-17
Identities = 22/98 (22%), Positives = 39/98 (39%), Gaps = 4/98 (4%)
Query: 410 PGPPAAPVILNTTRGSVTLGWGEPEPRGGGVAPVIGYTVEY-FSSDLQTGWVVAAHRITS 468
PGPP + SV L W P G ++ Y + + ++ V ++
Sbjct: 28 PGPPMGILFPEVRTTSVRLIWQPPAAPNG---IILAYQITHRLNTTTANTATVEVLAPSA 84
Query: 469 TSITVSDLKPDTSYMFIVRAENSHGLGIPSPVSPITRT 506
T + LKP++ Y+F + A+ G G + +T
Sbjct: 85 RQYTATGLKPESVYLFRITAQTRKGWGEAAEALVVTTE 122
Score = 29.3 bits (66), Expect = 1.5
Identities = 12/66 (18%), Positives = 20/66 (30%), Gaps = 22/66 (33%)
Query: 575 ELIPTASTAVRITWE----------KYN------------MATVMNAATTTSYTVTHLRK 612
+T+VR+ W+ Y + A + YT T L+
Sbjct: 35 LFPEVRTTSVRLIWQPPAAPNGIILAYQITHRLNTTTANTATVEVLAPSARQYTATGLKP 94
Query: 613 FTKYEF 618
+ Y F
Sbjct: 95 ESVYLF 100
>3r8q_A Fibronectin; heparin, FNIII, heparin binding, cell adhesion; 2.40A
{Homo sapiens} PDB: 1fnh_A
Length = 290
Score = 82.9 bits (205), Expect = 1e-17
Identities = 35/224 (15%), Positives = 56/224 (25%), Gaps = 55/224 (24%)
Query: 410 PGPPAAPVILNTTRGSVTLGWGEPEPRGGGVAPVIGYTVEYFSSDLQTGWVVAAHRITST 469
P T S++ W P + GY V + S+
Sbjct: 21 IPAPTDLKFTQVTPTSLSAQWTPPN------VQLTGYRVRVTPKEKTGPMKEINLAPDSS 74
Query: 470 SITVSDLKPDTSYMFIVRAENSHGLGIPSPVSPITRTLGLNSLVPQHLLDEARARLGTKV 529
S+ VS L T Y V A P+ T ++ P
Sbjct: 75 SVVVSGLMVATKYEVSVYALKDTLTSRPAQGVVTTLE----NVSP--------------P 116
Query: 530 VNLRELIPTASTAVRITWEVSWGSVPQHLLDEARARLGTKVVNLRELIPTASTAVRITWE 589
R + T + I+W ++ T ++
Sbjct: 117 RRAR-VTDATETTITISWRTKTETI---------------------------TGFQVDAV 148
Query: 590 KYNMAT---VMNAATTTSYTVTHLRKFTKYEFFLVPFFKTVEGA 630
N T SYT+T L+ T Y+ +L +
Sbjct: 149 PANGQTPIQRTIKPDVRSYTITGLQPGTDYKIYLYTLNDNARSS 192
Score = 81.4 bits (201), Expect = 3e-17
Identities = 30/224 (13%), Positives = 63/224 (28%), Gaps = 59/224 (26%)
Query: 410 PGPPAAPVILNTTRGSVTLGWGEPEPRGGGVAPVIGYTVEYFSSDLQTGWVVAAHRITST 469
PP + + T ++T+ W + G+ V+ ++ + +
Sbjct: 113 VSPPRRARVTDATETTITISWRTKT------ETITGFQVDAVPAN-GQTPIQRTIKPDVR 165
Query: 470 SITVSDLKPDTSYMFIVRAENSHGLGIPSPVSPITRTLGLNSLVPQHLLDEARARLGTKV 529
S T++ L+P T Y + N + P + T P +L
Sbjct: 166 SYTITGLQPGTDYKIYLYTLNDNARSSPVVIDASTAIDA-----PSNL------------ 208
Query: 530 VNLRELIPTASTAVRITWEVSWGSVPQHLLDEARARLGTKVVNLRELIPTASTAVRITWE 589
+ T ++ ++W+ + T I +E
Sbjct: 209 ----RFLATTPNSLLVSWQPPRARI---------------------------TGYIIKYE 237
Query: 590 KYN----MATVMNAATTTSYTVTHLRKFTKYEFFLVPFFKTVEG 629
K T T+T L T+Y +++ +
Sbjct: 238 KPGSPPREVVPRPRPGVTEATITGLEPGTEYTIYVIALKNNQKS 281
Score = 71.4 bits (175), Expect = 7e-14
Identities = 24/95 (25%), Positives = 35/95 (36%), Gaps = 6/95 (6%)
Query: 410 PGPPAAPVILNTTRGSVTLGWGEPEPRGGGVAPVIGYTVEYFSSDLQTGWVVAAHRITST 469
P+ L TT S+ + W P A + GY ++Y VV R T
Sbjct: 202 IDAPSNLRFLATTPNSLLVSWQPPR------ARITGYIIKYEKPGSPPREVVPRPRPGVT 255
Query: 470 SITVSDLKPDTSYMFIVRAENSHGLGIPSPVSPIT 504
T++ L+P T Y V A ++ P T
Sbjct: 256 EATITGLEPGTEYTIYVIALKNNQKSEPLIGRKKT 290
Score = 32.8 bits (75), Expect = 0.29
Identities = 12/71 (16%), Positives = 20/71 (28%), Gaps = 18/71 (25%)
Query: 581 STAVRITWEK------------------YNMATVMNAATTTSYTVTHLRKFTKYEFFLVP 622
T++ W M + A ++S V+ L TKYE +
Sbjct: 34 PTSLSAQWTPPNVQLTGYRVRVTPKEKTGPMKEINLAPDSSSVVVSGLMVATKYEVSVYA 93
Query: 623 FFKTVEGARLD 633
T+
Sbjct: 94 LKDTLTSRPAQ 104
>3p4l_A Neogenin; iron homeostasis, hemojuvelin receptor, FNIII domain,
fibron type III, cell adhesion; 1.80A {Homo sapiens}
PDB: 1x5k_A
Length = 211
Score = 79.8 bits (197), Expect = 3e-17
Identities = 36/210 (17%), Positives = 61/210 (29%), Gaps = 34/210 (16%)
Query: 410 PGPPAAPVILNTTRGSVTLGWGEPE-PRGGGVAPVIGYTVEYFSSDLQTGWVVAAHRITS 468
PP + ++ + W + P+ + YTV + +++ T+
Sbjct: 5 MMPPVGVQASILSHDTIRITWADNSLPKHQKITDSRYYTVRW-KTNIPANTKYKNANATT 63
Query: 469 TSITVSDLKPDTSYMFIVRAENSHGLGIPSPVSPITRTLGLNSLVPQHLLDEARARLGTK 528
S V+ LKP+T Y F V S + T LVP
Sbjct: 64 LSYLVTGLKPNTLYEFSVMVTKGRRSSTWSMTAHG-TTFE---LVPT------SPPKDVT 113
Query: 529 VVNLRELIPTASTAVRITWEVSWGSVPQHLLDEARARLGTKVVNLRELIPTASTAVRITW 588
VV+ + + W+ P G + I ST V
Sbjct: 114 VVS----KEGKPKTIIVNWQ-----PPSE-------ANG----KITGYIIYYSTDVNAEI 153
Query: 589 EKYNMATVMNAATTTSYTVTHLRKFTKYEF 618
+ + V ++ + L T Y F
Sbjct: 154 HDWVIEPV--VGNRLTHQIQELTLDTPYYF 181
Score = 66.0 bits (161), Expect = 2e-12
Identities = 22/100 (22%), Positives = 36/100 (36%), Gaps = 8/100 (8%)
Query: 410 PGPPAAPVIL---NTTRGSVTLGWGEPEPRGGGVAPVIGYTVEY--FSSDLQTGWVVAAH 464
P P V + ++ + W P G + GY + Y + WV+
Sbjct: 105 PTSPPKDVTVVSKEGKPKTIIVNWQPPSEANG---KITGYIIYYSTDVNAEIHDWVIEPV 161
Query: 465 RITSTSITVSDLKPDTSYMFIVRAENSHGLGIPSPVSPIT 504
+ + +L DT Y F ++A NS G+G S
Sbjct: 162 VGNRLTHQIQELTLDTPYYFKIQARNSKGMGPMSEAVQFR 201
Score = 37.1 bits (86), Expect = 0.010
Identities = 19/98 (19%), Positives = 28/98 (28%), Gaps = 17/98 (17%)
Query: 534 ELIPTASTAVRITWEVSWGSVPQHLLDEARARLGTKVVNLRELIPTASTAVRITWEKYNM 593
+ + +RITW + V + IP +
Sbjct: 12 QASILSHDTIRITWAD-----NSLPKHQKITDSRYYTVRWKTNIPANTKYKNAN------ 60
Query: 594 ATVMNAATTTSYTVTHLRKFTKYEFFLVPFFKTVEGAR 631
ATT SY VT L+ T YEF ++
Sbjct: 61 ------ATTLSYLVTGLKPNTLYEFSVMVTKGRRSSTW 92
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4
complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB:
3zyo_A* 3zyn_A* 2dl9_A
Length = 452
Score = 83.6 bits (207), Expect = 3e-17
Identities = 26/93 (27%), Positives = 43/93 (46%), Gaps = 7/93 (7%)
Query: 71 KPFPISEPSDATVLSGSVVEFVCRVGGDPLPTILWRRDDGKMPT-----GRAKILDDRSL 125
PF + P D + G + E CR P+ ++ W +G + + R +L+D +L
Sbjct: 352 APFIMDAPRDLNISEGRMAELKCRT--PPMSSVKWLLPNGTVLSHASRHPRISVLNDGTL 409
Query: 126 QIENVGPQDEGLYICDVENLVGSISLRASLTVH 158
+V D G+Y C V N+ G+ + A L V
Sbjct: 410 NFSHVLLSDTGVYTCMVTNVAGNSNASAYLNVS 442
Score = 61.7 bits (150), Expect = 3e-10
Identities = 22/74 (29%), Positives = 32/74 (43%), Gaps = 3/74 (4%)
Query: 259 RLSCFAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSAL 318
L C P+ SV W VL + + + V +GTL V D G + C
Sbjct: 371 ELKCRT--PPMSSVKWLLPNGTVLS-HASRHPRISVLNDGTLNFSHVLLSDTGVYTCMVT 427
Query: 319 SVAGSTTVRAFLQV 332
+VAG++ A+L V
Sbjct: 428 NVAGNSNASAYLNV 441
Score = 41.7 bits (98), Expect = 7e-04
Identities = 12/39 (30%), Positives = 22/39 (56%)
Query: 363 DLRETDSGLYTCTASSESGETSWSASLSVEPRPGPHAVH 401
+ +D+G+YTC ++ +G ++ SA L+V H H
Sbjct: 413 HVLLSDTGVYTCMVTNVAGNSNASAYLNVSTAGTHHHHH 451
Score = 33.6 bits (77), Expect = 0.21
Identities = 11/44 (25%), Positives = 19/44 (43%), Gaps = 4/44 (9%)
Query: 167 EPKDTRVASGETALLECGPPKGQPEPTLHWKK-NGQFIDLESSK 209
P+D ++ G A L+C + P ++ W NG + S
Sbjct: 358 APRDLNISEGRMAELKC---RTPPMSSVKWLLPNGTVLSHASRH 398
>1fnl_A Low affinity immunoglobulin gamma FC region receptor III-B; beta
sandwich, immunoglobulin-like, immune system receptor;
1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1e4j_A
1e4k_C* 1t83_C* 1t89_C* 3ay4_C*
Length = 175
Score = 78.8 bits (194), Expect = 4e-17
Identities = 25/141 (17%), Positives = 39/141 (27%), Gaps = 11/141 (7%)
Query: 71 KPFPISEPSDATVLSGSVVEFVCRVGGDPLP-TILWRRDDGKMPTGRAKILDDRSLQIEN 129
K EP +VL V C+ P + W ++ + + S I+
Sbjct: 7 KAVVFLEPQWYSVLEKDSVTLKCQGAYSPEDNSTQWFHNESLISS------QASSYFIDA 60
Query: 130 VGPQDEGLYICDVENLVGSISLRASLTVHLLRDDFRAEPKDTRVASGETALLECGPPKGQ 189
D G Y C S L VH + + L C K
Sbjct: 61 ATVNDSGEYRCQTNLSTLSDP--VQLEVH--IGWLLLQAPRWVFKEEDPIHLRCHSWKNT 116
Query: 190 PEPTLHWKKNGQFIDLESSKS 210
+ + +NG+ S
Sbjct: 117 ALHKVTYLQNGKDRKYFHHNS 137
Score = 54.9 bits (132), Expect = 6e-09
Identities = 29/183 (15%), Positives = 51/183 (27%), Gaps = 36/183 (19%)
Query: 167 EPKDTRVASGETALLECGPPKGQPEPTLHWKKNGQFIDLESSKSLDLSR----------- 215
EP+ V ++ L+C + + W N I + S +
Sbjct: 13 EPQWYSVLEKDSVTLKCQGAYSPEDNSTQWFHNESLIS-SQASSYFIDAATVNDSGEYRC 71
Query: 216 RTLGWLRVRPLYWNVARPRANLNPRYIGRKMASLLIWNHPRVNRLSCFA-EGSPLPSVFW 274
+T P+ V L K + L C + + + L V +
Sbjct: 72 QTNLSTLSDPVQLEVHIGWLLLQAPRWVFKEEDPIH--------LRCHSWKNTALHKVTY 123
Query: 275 TQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAG---STTVRAFLQ 331
Q G F I +D+G + C L + S TV +
Sbjct: 124 LQNGKDRKYFH----------HNSDFHIPKATLKDSGSYFCRGLVGSKNVSSETVN--IT 171
Query: 332 VRE 334
+ +
Sbjct: 172 ITQ 174
Score = 52.6 bits (126), Expect = 3e-08
Identities = 9/88 (10%), Positives = 24/88 (27%), Gaps = 6/88 (6%)
Query: 72 PFPISEPSDATVLSGSVVEFVCRV-GGDPLPTILWRRDDGKMPTGRAKILDDRSLQIENV 130
+ + + + C L + + ++ + I
Sbjct: 89 GWLLLQAPRWVFKEEDPIHLRCHSWKNTALHKVTYLQNGKDRKYFH----HNSDFHIPKA 144
Query: 131 GPQDEGLYICDVENLVGSI-SLRASLTV 157
+D G Y C ++ S ++T+
Sbjct: 145 TLKDSGSYFCRGLVGSKNVSSETVNITI 172
Score = 45.6 bits (108), Expect = 1e-05
Identities = 29/160 (18%), Positives = 48/160 (30%), Gaps = 42/160 (26%)
Query: 260 LSCFAEGSPLP-SVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSAL 318
L C SP S W S + +Q + I D+G + C
Sbjct: 27 LKCQGAYSPEDNSTQWFHNESLIS------------SQASSYFIDAATVNDSGEYRCQTN 74
Query: 319 SVAGSTTVRAFLQVR---EFCVLPKGTFTLGQP-NL---ATGNSDLRRIAC--------- 362
S V+ L+V P+ F P +L + N+ L ++
Sbjct: 75 LSTLSDPVQ--LEVHIGWLLLQAPRWVFKEEDPIHLRCHSWKNTALHKVTYLQNGKDRKY 132
Query: 363 ----------DLRETDSGLYTCTASSESG-ETSWSASLSV 391
DSG Y C S +S + ++++
Sbjct: 133 FHHNSDFHIPKATLKDSGSYFCRGLVGSKNVSSETVNITI 172
>2e7c_A Myosin-binding protein C, fast-type; IG-like domain, fast MYBP-C,
C-protein, skeletal muscle fast-isoform, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 118
Score = 76.7 bits (189), Expect = 4e-17
Identities = 19/113 (16%), Positives = 33/113 (29%), Gaps = 6/113 (5%)
Query: 51 GARGALSDDQWKLIAKEALIKP---FPISEPSDATVLSGSVVEFVCRVGGDPLPTILWRR 107
G+ G+ + +E P P G + V G P P ++W +
Sbjct: 1 GSSGSSGTLAQPVTIREIAEPPKIRLPRHLRQTYIRKVGEQLNLVVPFQGKPRPQVVWTK 60
Query: 108 DDGKMPTGRAKIL---DDRSLQIENVGPQDEGLYICDVENLVGSISLRASLTV 157
+ T R + D + D G Y V+ + + V
Sbjct: 61 GGAPLDTSRVHVRTSDFDTVFFVRQAARSDSGEYELSVQIENMKDTATIRIRV 113
Score = 52.8 bits (127), Expect = 1e-08
Identities = 14/76 (18%), Positives = 27/76 (35%), Gaps = 3/76 (3%)
Query: 259 RLSCFAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSAL 318
L +G P P V WT+ G+ + + + ++ + D+G + S
Sbjct: 43 NLVVPFQGKPRPQVVWTKGGAPL---DTSRVHVRTSDFDTVFFVRQAARSDSGEYELSVQ 99
Query: 319 SVAGSTTVRAFLQVRE 334
T ++V E
Sbjct: 100 IENMKDTATIRIRVVE 115
Score = 42.4 bits (100), Expect = 4e-05
Identities = 7/34 (20%), Positives = 15/34 (44%)
Query: 363 DLRETDSGLYTCTASSESGETSWSASLSVEPRPG 396
+DSG Y + E+ + + + + V + G
Sbjct: 85 QAARSDSGEYELSVQIENMKDTATIRIRVVEKAG 118
Score = 37.4 bits (87), Expect = 0.002
Identities = 11/37 (29%), Positives = 16/37 (43%), Gaps = 1/37 (2%)
Query: 168 PKDTRVASGETALLECGPPKGQPEPTLHWKKNGQFID 204
+ GE L P +G+P P + W K G +D
Sbjct: 31 RQTYIRKVGEQLNLVV-PFQGKPRPQVVWTKGGAPLD 66
>2oz4_A Intercellular adhesion molecule 1; IGSF domain, structural
plasticity, cell-surface dimerizatio adhesion; HET: NAG
FUC; 2.70A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 b.1.1.4
PDB: 1p53_A*
Length = 265
Score = 80.9 bits (199), Expect = 4e-17
Identities = 43/279 (15%), Positives = 72/279 (25%), Gaps = 44/279 (15%)
Query: 75 ISEPSDATVLSGSVVEFVCRVGGD---PLPTILWRRDDGKMPTGRAKILDDRSLQIE--- 128
+ P V + VC + G + D ++ D S +
Sbjct: 9 LVSPRVLEV--DTQGTVVCSLDGLFPVSEAQVHLALGDQRLNPTVTYGNDSFSAKASVSV 66
Query: 129 NVGPQDEGLYICDVENLVGSISLRASLTVHLLRDDFRAEPKDTRVASGETALLECGPPKG 188
+ C V S ++T++ V+ G ++C +
Sbjct: 67 TAEDEGTQRLTCAVILGNQSQETLQTVTIYS-FPAPNVILTKPEVSEGTEVTVKC---EA 122
Query: 189 QPEPTLHWKKNGQFIDLESSKS---LDLSRRTLG-------WLRVRPLYWNVARPRANLN 238
P NG ++ L + G L V L
Sbjct: 123 HPRAK--VTLNGVPAQPLGPRAQLLLKATPEDNGRSFSCSATLEVAGQLI-HKNQTRELR 179
Query: 239 ----PRYIGRKMASLLIWNHPRVNRLSCFAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHV 294
PR R W C A G+PLP + ++G+ L
Sbjct: 180 VLYGPRLDERDCPGNWTWPENSQQTPMCQAWGNPLPELKCLKDGTFPLP----------- 228
Query: 295 TQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVR 333
V ++ G ++C A S G T + V
Sbjct: 229 ----IGESVTVTRDLEGTYLCRARSTQGEVTREVTVNVL 263
Score = 75.9 bits (186), Expect = 2e-15
Identities = 26/137 (18%), Positives = 38/137 (27%), Gaps = 14/137 (10%)
Query: 72 PFPISEPSDATVLSGSVVEFVCRVGGDPLPTILWRRDDGKMPTGRAKILDDRSLQIENVG 131
P P + V G+ V C P + + RA L ++
Sbjct: 99 PAPNVILTKPEVSEGTEVTVKCE--AHPRAKVTLNGVPAQPLGPRA------QLLLKATP 150
Query: 132 PQDEGLYICDVENLVGSISLRASLTVHLL-----RDDFRAEPKDTRVASGETALLECGPP 186
+ + C V + + T L R D R P + C
Sbjct: 151 EDNGRSFSCSATLEVAGQLIHKNQTRELRVLYGPRLDERDCPGNWTWPENSQQTPMCQ-A 209
Query: 187 KGQPEPTLHWKKNGQFI 203
G P P L K+G F
Sbjct: 210 WGNPLPELKCLKDGTFP 226
Score = 55.1 bits (132), Expect = 2e-08
Identities = 36/270 (13%), Positives = 67/270 (24%), Gaps = 71/270 (26%)
Query: 173 VASGETALLECGPPKGQP--EPTLHWKKNGQFIDLESSKSLDLSRRTLGWLRVRPLYWNV 230
+ + C P E +H Q ++ + D + V
Sbjct: 15 LEVDTQGTVVCSLDGLFPVSEAQVHLALGDQRLNPTVTYGNDSFSAKA-SVSVTAEDEGT 73
Query: 231 ARPRANL-NPRYIGRKMASLLIWNHPRVN--------------RLSCFAEGSPLPSVFWT 275
R + + ++ I++ P N + C A ++
Sbjct: 74 QRLTCAVILGNQSQETLQTVTIYSFPAPNVILTKPEVSEGTEVTVKCEAHPRAKVTLNGV 133
Query: 276 QEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSA-LSVAGSTTVR---AFLQ 331
+ L ++ +++ F CSA L VAG + L+
Sbjct: 134 PAQP--------------LGPRAQLLLKATPEDNGRSFSCSATLEVAGQLIHKNQTRELR 179
Query: 332 V------------REFCVLPKGTFTL-----------------GQPNLATGNSDLRRIAC 362
V + T G L G + +
Sbjct: 180 VLYGPRLDERDCPGNWTWPENSQQTPMCQAWGNPLPELKCLKDGTFPLPIG--ESVTV-- 235
Query: 363 DLRETDSGLYTCTASSESGETSWSASLSVE 392
G Y C A S GE + +++V
Sbjct: 236 --TRDLEGTYLCRARSTQGEVTREVTVNVL 263
Score = 41.2 bits (96), Expect = 6e-04
Identities = 29/206 (14%), Positives = 57/206 (27%), Gaps = 41/206 (19%)
Query: 260 LSCFAEGS-PLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSAL 318
+ C +G P+ + P YG+ + + ++ + + E C+ +
Sbjct: 23 VVCSLDGLFPVSEAQVHLALGDQRLNPTVTYGNDSFSAKASVSVT-AEDEGTQRLTCAVI 81
Query: 319 SVAGSTTVRAFLQVREFCVLPKGTFTLGQPNLATGNS----------------------- 355
S + + F P L +P ++ G
Sbjct: 82 LGNQSQETLQTVTIYSF---PAPNVILTKPEVSEGTEVTVKCEAHPRAKVTLNGVPAQPL 138
Query: 356 --DLRRIACDLRETDSGLYTCTASSESGETSWSASLSVEPRPGPHAVHRMPDSGLFPGPP 413
+ + E + ++C+A+ E + + E R V P P
Sbjct: 139 GPRAQLLLKATPEDNGRSFSCSATLEVAGQLIHKNQTRELR-----VLYGPRLDERDCPG 193
Query: 414 AAPVILNTTRGSVTLG---WGEPEPR 436
N+ T WG P P
Sbjct: 194 NWTWPENSQ---QTPMCQAWGNPLPE 216
>3cx2_A Myosin-binding protein C, cardiac-type; protonation states,
actin-binding, cardiomyopathy, cell adhesion, disease
mutation, immunoglobulin domain; 1.30A {Homo sapiens}
PDB: 2v6h_A 2avg_A
Length = 108
Score = 76.2 bits (187), Expect = 4e-17
Identities = 24/100 (24%), Positives = 32/100 (32%), Gaps = 16/100 (16%)
Query: 75 ISEPSDATVLSGSVVEFVCRVGGDPL---PTILWRRDDG-------------KMPTGRAK 118
+ P D V G + F RV G L P + W + RA
Sbjct: 8 VMRPQDGEVTVGGSITFSARVAGASLLKPPVVKWFKGKWVDLSSKVGQHLQLHDSYDRAS 67
Query: 119 ILDDRSLQIENVGPQDEGLYICDVENLVGSISLRASLTVH 158
+ L I + P G Y C+V +LTVH
Sbjct: 68 KVYLFELHITDAQPAFTGSYRCEVSTKDKFDCSNFNLTVH 107
Score = 46.5 bits (110), Expect = 1e-06
Identities = 17/86 (19%), Positives = 24/86 (27%), Gaps = 10/86 (11%)
Query: 259 RLSCFAEGSPL---PSVFWTQEGSQVLMFPGNAYGHLHVTQE-------GTLRIQGVQKE 308
S G+ L P V W + L + LH + + L I Q
Sbjct: 23 TFSARVAGASLLKPPVVKWFKGKWVDLSSKVGQHLQLHDSYDRASKVYLFELHITDAQPA 82
Query: 309 DAGFFVCSALSVAGSTTVRAFLQVRE 334
G + C + L V E
Sbjct: 83 FTGSYRCEVSTKDKFDCSNFNLTVHE 108
Score = 41.1 bits (96), Expect = 9e-05
Identities = 7/29 (24%), Positives = 14/29 (48%)
Query: 363 DLRETDSGLYTCTASSESGETSWSASLSV 391
D + +G Y C S++ + +L+V
Sbjct: 78 DAQPAFTGSYRCEVSTKDKFDCSNFNLTV 106
Score = 34.6 bits (79), Expect = 0.016
Identities = 10/50 (20%), Positives = 14/50 (28%), Gaps = 4/50 (8%)
Query: 164 FRAEPKDTRVASGETALLEC---GPPKGQPEPTLHWKKNGQFIDLESSKS 210
F P+D V G + G +P P + W K
Sbjct: 7 FVMRPQDGEVTVGGSITFSARVAGASLLKP-PVVKWFKGKWVDLSSKVGQ 55
>2dm4_A Sortilin-related receptor; beta-sandwich, sorting protein-related
receptor containing LDLR class A repeats, sorla; NMR
{Homo sapiens}
Length = 108
Score = 76.3 bits (188), Expect = 5e-17
Identities = 25/97 (25%), Positives = 32/97 (32%), Gaps = 8/97 (8%)
Query: 410 PGPPAAPVI--LNTTRGSVTLGWGEPEPRGGGVAPVIGYTVEYFSSDLQTGWVVAAHRIT 467
P P + G + W P G + Y VEY S W R
Sbjct: 8 PDAPRNLQLSLPREAEGVIVGHWAPPIHTHG---LIREYIVEYSRSG-SKMWAS--QRAA 61
Query: 468 STSITVSDLKPDTSYMFIVRAENSHGLGIPSPVSPIT 504
S + +L +T Y V A S G+G S IT
Sbjct: 62 SNFTEIKNLLVNTLYTVRVAAVTSRGIGNWSDSKSIT 98
>1tdq_A Tenascin-R; extracellular matrix, lecticans, tenascins,
protein-protein interactions, C-type lectin domain;
2.60A {Rattus norvegicus} SCOP: b.1.2.1 b.1.2.1 b.1.2.1
Length = 283
Score = 81.0 bits (200), Expect = 5e-17
Identities = 29/221 (13%), Positives = 56/221 (25%), Gaps = 48/221 (21%)
Query: 410 PGPPAAPVILNTTRGSVTLGWGEPEPRGGGVAPVIGYTVEYFSSDLQTGWVVAAHRITST 469
P ++ + + + W P A V ++Y + G + +
Sbjct: 15 IDGPTQILVRDVSDTVAFVEWTPPR------AKVDFILLKYGLVGGEGGKTTFRLQPPLS 68
Query: 470 SITVSDLKPDTSYMFIVRAENSHGLGIPSPVSPITRTLGLNSLVPQHLLDEARARLGTKV 529
+V L+P + Y + A S T P++L
Sbjct: 69 QYSVQALRPGSRYEVSISAVRGTNESDASSTQFTTE-----IDAPKNL------------ 111
Query: 530 VNLRELIPTASTAVRITWEVSWGSVPQHLLDEARARLGTKVVNLRELIPTASTAVRITWE 589
+ +T++ + W+ S KV A
Sbjct: 112 ----RVGSRTATSLDLEWDNSEAEA-----------QEYKV----VYSTLAGEQYHEVL- 151
Query: 590 KYNMATVMNAATTTSYTVTHLRKFTKYEFFLVPFFKTVEGA 630
TT T+T L T+Y + + +
Sbjct: 152 -----VPKGIGPTTKTTLTDLVPGTEYGVGISAVMNSKQSI 187
Score = 74.8 bits (184), Expect = 6e-15
Identities = 38/225 (16%), Positives = 68/225 (30%), Gaps = 58/225 (25%)
Query: 410 PGPPAAPVILNTTRGSVTLGWGEPEPRGGGVAPVIGYTVEYF--SSDLQTGWVVAAHRIT 467
P + + T S+ L W E A Y V Y + + +V
Sbjct: 105 IDAPKNLRVGSRTATSLDLEWDNSE------AEAQEYKVVYSTLAGEQYHEVLVPKGIGP 158
Query: 468 STSITVSDLKPDTSYMFIVRAENSHGLGIPSPVSPITRTLGLNSLVPQHLLDEARARLGT 527
+T T++DL P T Y + A + IP+ ++ T P+ L
Sbjct: 159 TTKTTLTDLVPGTEYGVGISAVMNSKQSIPATMNARTE-----LDSPRDL---------- 203
Query: 528 KVVNLRELIPTASTAVRITWEVSWGSVPQHLLDEARARLGTKVVNLRELIPTASTAVRIT 587
+ ++ T++ + W + G + RIT
Sbjct: 204 ------MVTASSETSISLIWTKASGPI---------------------------DHYRIT 230
Query: 588 WEKYN--MATVMNAATTTSYTVTHLRKFTKYEFFLVPFFKTVEGA 630
+ + + V TSYT+T L +Y + +
Sbjct: 231 FTPSSGISSEVTVPRDRTSYTLTDLEPGAEYIISITAERGRQQSL 275
Score = 64.1 bits (156), Expect = 2e-11
Identities = 20/95 (21%), Positives = 37/95 (38%), Gaps = 8/95 (8%)
Query: 410 PGPPAAPVILNTTRGSVTLGWGEPEPRGGGVAPVIGYTVEYFSSDLQTGWVVAAHRITST 469
P ++ ++ S++L W + P+ Y + + S + V T
Sbjct: 197 LDSPRDLMVTASSETSISLIWTKAS------GPIDHYRITFTPSSGISSEVTVP--RDRT 248
Query: 470 SITVSDLKPDTSYMFIVRAENSHGLGIPSPVSPIT 504
S T++DL+P Y+ + AE + S V T
Sbjct: 249 SYTLTDLEPGAEYIISITAERGRQQSLESTVDAFT 283
>1x5l_A Ephrin type-A receptor 8; FN3 domain, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: b.1.2.1
Length = 111
Score = 75.9 bits (187), Expect = 6e-17
Identities = 29/95 (30%), Positives = 42/95 (44%), Gaps = 4/95 (4%)
Query: 410 PGPPAAPVILNTTRGSVTLGWGEPEPRGGGVAPVIGYTVEYFSSDLQTGWVVAAHRITST 469
P + SV+L W EPE G ++ Y ++Y+ D + + + +T
Sbjct: 11 PSQVVVIRQERAGQTSVSLLWQEPEQPNG---IILEYEIKYYEKD-KEMQSYSTLKAVTT 66
Query: 470 SITVSDLKPDTSYMFIVRAENSHGLGIPSPVSPIT 504
TVS LKP T Y+F VRA S G G S +
Sbjct: 67 RATVSGLKPGTRYVFQVRARTSAGCGRFSQAMEVE 101
Score = 29.2 bits (66), Expect = 1.4
Identities = 16/70 (22%), Positives = 26/70 (37%), Gaps = 21/70 (30%)
Query: 569 KVVNLRELIPTASTAVRITWE----------KY----------NMATVMNAATTTSYTVT 608
+VV +R T+V + W+ +Y + A TT TV+
Sbjct: 13 QVVVIR-QERAGQTSVSLLWQEPEQPNGIILEYEIKYYEKDKEMQSYSTLKAVTTRATVS 71
Query: 609 HLRKFTKYEF 618
L+ T+Y F
Sbjct: 72 GLKPGTRYVF 81
>2djs_A Ephrin type-B receptor 1; tyrosine-protein kinase receptor EPH-2,
NET, HEK6, ELK, structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: b.1.2.1
Length = 108
Score = 75.2 bits (185), Expect = 1e-16
Identities = 21/95 (22%), Positives = 37/95 (38%), Gaps = 4/95 (4%)
Query: 410 PGPPAAPVILNTTRGSVTLGWGEPEPRGGGVAPVIGYTVEYFSSDLQTGWVVAAHRITST 469
P ++ T S+TL W +PE G ++ Y + Y+ + + + R +
Sbjct: 8 PSTVPIMHQVSATMRSITLSWPQPEQPNG---IILDYEIRYYEKE-HNEFNSSMARSQTN 63
Query: 470 SITVSDLKPDTSYMFIVRAENSHGLGIPSPVSPIT 504
+ + L+P Y+ VRA G G S
Sbjct: 64 TARIDGLRPGMVYVVQVRARTVAGYGKFSGKMCFQ 98
Score = 26.6 bits (59), Expect = 9.0
Identities = 5/24 (20%), Positives = 9/24 (37%)
Query: 595 TVMNAATTTSYTVTHLRKFTKYEF 618
+ M + T + + LR Y
Sbjct: 55 SSMARSQTNTARIDGLRPGMVYVV 78
>1wfn_A Sidekick 2; FN3, cell adhesion, structural genomics, riken
structural genomics/proteomics initiative, RSGI; NMR
{Homo sapiens} SCOP: b.1.2.1
Length = 119
Score = 75.6 bits (186), Expect = 1e-16
Identities = 21/92 (22%), Positives = 32/92 (34%), Gaps = 3/92 (3%)
Query: 410 PGPPAAPVILNTTRGSVTLGWGEPEPRGGGVAPVIGYTVEYFSSDLQTGWVVAAHRITST 469
PGP S+ + W EP + G + GY + + + V +
Sbjct: 18 PGPVGHLSFSEILDTSLKVSWQEPGEKNG---ILTGYRISWEEYNRTNTRVTHYLPNVTL 74
Query: 470 SITVSDLKPDTSYMFIVRAENSHGLGIPSPVS 501
V+ L T+Y V A S G G S +
Sbjct: 75 EYRVTGLTALTTYTIEVAAMTSKGQGQVSAST 106
Score = 31.3 bits (71), Expect = 0.27
Identities = 14/38 (36%), Positives = 16/38 (42%), Gaps = 4/38 (10%)
Query: 585 RITWEKYN----MATVMNAATTTSYTVTHLRKFTKYEF 618
RI+WE+YN T T Y VT L T Y
Sbjct: 52 RISWEEYNRTNTRVTHYLPNVTLEYRVTGLTALTTYTI 89
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse;
HET: NAG BMA MAN; 3.25A {Homo sapiens}
Length = 440
Score = 81.7 bits (202), Expect = 1e-16
Identities = 30/92 (32%), Positives = 42/92 (45%), Gaps = 6/92 (6%)
Query: 71 KPFPISEPSDATVLSGSVVEFVCRVGGDPLPTILWRRDDGKMPT-----GRAKILDDRSL 125
P + P+D V G E CR L ++ W +G + T R +L D +L
Sbjct: 341 APVIVEPPADLNVTEGMAAELKCRAST-SLTSVSWITPNGTVMTHGAYKVRIAVLSDGTL 399
Query: 126 QIENVGPQDEGLYICDVENLVGSISLRASLTV 157
NV QD G+Y C V N VG+ + A+L V
Sbjct: 400 NFTNVTVQDTGMYTCMVSNSVGNTTASATLNV 431
Score = 59.0 bits (143), Expect = 2e-09
Identities = 23/74 (31%), Positives = 30/74 (40%), Gaps = 2/74 (2%)
Query: 259 RLSCFAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSAL 318
L C A S SV W V+ G + V +GTL V +D G + C
Sbjct: 360 ELKCRASTSL-TSVSWITPNGTVMT-HGAYKVRIAVLSDGTLNFTNVTVQDTGMYTCMVS 417
Query: 319 SVAGSTTVRAFLQV 332
+ G+TT A L V
Sbjct: 418 NSVGNTTASATLNV 431
Score = 42.0 bits (99), Expect = 4e-04
Identities = 13/36 (36%), Positives = 21/36 (58%)
Query: 363 DLRETDSGLYTCTASSESGETSWSASLSVEPRPGPH 398
++ D+G+YTC S+ G T+ SA+L+V H
Sbjct: 403 NVTVQDTGMYTCMVSNSVGNTTASATLNVTGTHHHH 438
Score = 32.0 bits (73), Expect = 0.67
Identities = 11/44 (25%), Positives = 16/44 (36%), Gaps = 3/44 (6%)
Query: 167 EPKDTRVASGETALLECGPPKGQPEPTLHWKK-NGQFIDLESSK 209
P D V G A L+C ++ W NG + + K
Sbjct: 347 PPADLNVTEGMAAELKC--RASTSLTSVSWITPNGTVMTHGAYK 388
>3sgj_C Human FCG3A receptor; receptor complex, FC receptor, antibody,
immune system; HET: NAG BMA MAN FUC; 2.20A {Homo
sapiens} PDB: 3sgk_C*
Length = 204
Score = 76.8 bits (189), Expect = 3e-16
Identities = 27/145 (18%), Positives = 43/145 (29%), Gaps = 11/145 (7%)
Query: 67 EALIKPFPISEPSDATVLSGSVVEFVCRVGGDPLP-TILWRRDDGKMPTGRAKILDDRSL 125
E L K EP VL V C+ P + W ++ + + S
Sbjct: 3 EDLPKAVVFLEPQWYRVLEKDSVTLKCQGAYSPEDQSTQWFHNESLISS------QASSY 56
Query: 126 QIENVGPQDEGLYICDVENLVGSISLRASLTVHLLRDDFRAEPKDTRVASGETALLECGP 185
I+ D G Y C + ++S L VH + + L C
Sbjct: 57 FIDAATVDDSGEYRCQTQL--STLSDPVQLEVH--IGWLLLQAPRWVFKEEDPIHLRCHS 112
Query: 186 PKGQPEPTLHWKKNGQFIDLESSKS 210
K + + +NG+ S
Sbjct: 113 WKNTALHKVTYLQNGKGRKYFHHNS 137
Score = 48.3 bits (115), Expect = 1e-06
Identities = 9/88 (10%), Positives = 23/88 (26%), Gaps = 6/88 (6%)
Query: 72 PFPISEPSDATVLSGSVVEFVCRV-GGDPLPTILWRRDDGKMPTGRAKILDDRSLQIENV 130
+ + + + C L + + ++ + I
Sbjct: 89 GWLLLQAPRWVFKEEDPIHLRCHSWKNTALHKVTYLQNGKGRKYFH----HNSDFYIPKA 144
Query: 131 GPQDEGLYICDVENLVGSI-SLRASLTV 157
+D G Y C ++ S +T+
Sbjct: 145 TLKDSGSYFCRGLVGSKNVSSETVQITI 172
Score = 48.3 bits (115), Expect = 2e-06
Identities = 28/181 (15%), Positives = 51/181 (28%), Gaps = 32/181 (17%)
Query: 167 EPKDTRVASGETALLECGPPKGQPEPTLHWKKNGQFIDLESSKSLDLSR----------- 215
EP+ RV ++ L+C + + W N I + S +
Sbjct: 13 EPQWYRVLEKDSVTLKCQGAYSPEDQSTQWFHNESLIS-SQASSYFIDAATVDDSGEYRC 71
Query: 216 RTLGWLRVRPLYWNVARPRANLNPRYIGRKMASLLIWNHPRVNRLSCFAE-GSPLPSVFW 274
+T P+ V L K + L C + + L V +
Sbjct: 72 QTQLSTLSDPVQLEVHIGWLLLQAPRWVFKEEDPIH--------LRCHSWKNTALHKVTY 123
Query: 275 TQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRAF-LQVR 333
Q G F N I +D+G + C L + + + + +
Sbjct: 124 LQNGKGRKYFHHN----------SDFYIPKATLKDSGSYFCRGLVGSKNVSSETVQITIT 173
Query: 334 E 334
+
Sbjct: 174 Q 174
Score = 41.8 bits (98), Expect = 2e-04
Identities = 26/166 (15%), Positives = 44/166 (26%), Gaps = 41/166 (24%)
Query: 260 LSCFAEGSPLP-SVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSAL 318
L C SP S W S + +Q + I +D+G + C
Sbjct: 27 LKCQGAYSPEDQSTQWFHNESLIS------------SQASSYFIDAATVDDSGEYRCQTQ 74
Query: 319 SVAGSTTVR-------AFLQVREFCVLPKGTFTL------------------GQPNLATG 353
S V+ LQ + + L G+
Sbjct: 75 LSTLSDPVQLEVHIGWLLLQAPRWVFKEEDPIHLRCHSWKNTALHKVTYLQNGKGRKYFH 134
Query: 354 NSDLRRIACDLRETDSGLYTCTASSESG-ETSWSASLSV-EPRPGP 397
++ I DSG Y C S +S + +++ +
Sbjct: 135 HNSDFYIP-KATLKDSGSYFCRGLVGSKNVSSETVQITITQGLAVS 179
>3mj6_A Junctional adhesion molecule-like; immunoglobulin tandem domain,
cell adhesion, cell junction, glycoprotein,
immunoglobulin domain, membrane; HET: NAG FUC; 2.19A
{Mus musculus} PDB: 3mj7_A* 3mj9_A*
Length = 268
Score = 78.4 bits (192), Expect = 3e-16
Identities = 49/320 (15%), Positives = 91/320 (28%), Gaps = 93/320 (29%)
Query: 68 ALIKPFPISEPSDATVLSGSVVEFVCRV---GGDPLPTILWRR---------------DD 109
+ P V G V C V + + W +
Sbjct: 2 SQGLPGLTVSSPQLRVHVGESVLMGCVVQRTEEKHVDRVDWLFSKDKDDASEYVLFYYSN 61
Query: 110 GKMPTGRAK---------ILDDRSLQIENVGPQDEGLYICDVENLVGSISLRASLTVHLL 160
+PTGR + +D SL +++V DEG+Y C++ S+ ++ + + +L
Sbjct: 62 LSVPTGRFQNRSHLVGDTFHNDGSLLLQDVQKADEGIYTCEIRLKNESMVMKKPVELWVL 121
Query: 161 RDDFRAEPKDTRVASGETALLECG--PPKGQPEPTLHWKKNGQFIDLESSKSLDLSRRTL 218
++ P+D RV G+T + C + + ++W + E + S
Sbjct: 122 PEE----PRDLRVRVGDTTQMRCSIQSTEEKRVTKVNWMFSSGSHTEEETVLSYDSNMRS 177
Query: 219 GWLRVRPLYWNVARPRANLNPRYIGRKMASLLIWNHPRVNRLSCFAEGSPLPSVFWTQEG 278
G + + N + I R S+ +
Sbjct: 178 GKFQSLGRFRNRVDLTGD-----ISRNDGSIKLQT------------------------- 207
Query: 279 SQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVRE---- 334
V++ D G + CS + L V +
Sbjct: 208 --------------------------VKESDQGIYTCSIYVGKLESRKTIVLHVVQDEFQ 241
Query: 335 FCVLPKGTFTLGQPNLATGN 354
+ P GQ + GN
Sbjct: 242 RTISPTPPTDKGQQGILNGN 261
Score = 34.5 bits (78), Expect = 0.079
Identities = 7/33 (21%), Positives = 15/33 (45%)
Query: 363 DLRETDSGLYTCTASSESGETSWSASLSVEPRP 395
D+++ D G+YTC ++ + + P
Sbjct: 90 DVQKADEGIYTCEIRLKNESMVMKKPVELWVLP 122
>1hnf_A CD2; T lymphocyte adhesion glycoprotein; HET: NAG; 2.50A {Homo
sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1cdb_A 1gya_A*
1qa9_A
Length = 182
Score = 75.7 bits (186), Expect = 4e-16
Identities = 21/149 (14%), Positives = 46/149 (30%), Gaps = 20/149 (13%)
Query: 75 ISEPSDATVLSGSVVEFVCR--VGGDPLPTILWRRDDGK-------------MPTGRAKI 119
I+ + G + D + I W + K K+
Sbjct: 3 ITNALETWGALGQDINLDIPSFQMSDDIDDIKWEKTSDKKKIAQFRKEKETFKEKDTYKL 62
Query: 120 LDDRSLQIENVGPQDEGLYICDVENLVGSISLRASLTVHLLRDDFRAEPKDTRVASGETA 179
+ +L+I+++ D+ +Y + + G L + + K +
Sbjct: 63 FKNGTLKIKHLKTDDQDIYKVSIYDTKGKNVLEKIFDLKIQ----ERVSKPKISWTCINT 118
Query: 180 LLECGPPKGQPEPTLHWKKNGQFIDLESS 208
L C G +P L+ ++G+ + L
Sbjct: 119 TLTCEVMNG-TDPELNLYQDGKHLKLSQR 146
Score = 67.6 bits (165), Expect = 3e-13
Identities = 20/163 (12%), Positives = 47/163 (28%), Gaps = 27/163 (16%)
Query: 259 RLSCFAEGSPLPSVFWTQEGSQVLMF-------PGNAYGHLHVTQEGTLRIQGVQKEDAG 311
+ F + + W + + + + + GTL+I+ ++ +D
Sbjct: 20 DIPSFQMSDDIDDIKWEKTSDKKKIAQFRKEKETFKEKDTYKLFKNGTLKIKHLKTDDQD 79
Query: 312 FFVCSALSVAGSTTVRAFLQVREFCVLPKGTFTLGQPNL-----ATGNSDL--------- 357
+ S G + ++ + K + N +D
Sbjct: 80 IYKVSIYDTKGKNVLEKIFDLKIQERVSKPKISWTCINTTLTCEVMNGTDPELNLYQDGK 139
Query: 358 ------RRIACDLRETDSGLYTCTASSESGETSWSASLSVEPR 394
R I + S + CTA ++ + S +S +
Sbjct: 140 HLKLSQRVITHKWTTSLSAKFKCTAGNKVSKESSVEPVSCPEK 182
Score = 56.4 bits (136), Expect = 2e-09
Identities = 10/84 (11%), Positives = 21/84 (25%), Gaps = 9/84 (10%)
Query: 74 PISEPSDATVLSGSVVEFVCRVGGDPLPTILWRRDDGKMPTGRAKILDDRSLQIENVGPQ 133
+S+P + C V P + +D + + +
Sbjct: 105 RVSKPK--ISWTCINTTLTCEVMNGTDPELNLYQDGKHLKL-------SQRVITHKWTTS 155
Query: 134 DEGLYICDVENLVGSISLRASLTV 157
+ C N V S ++
Sbjct: 156 LSAKFKCTAGNKVSKESSVEPVSC 179
Score = 36.4 bits (84), Expect = 0.012
Identities = 6/39 (15%), Positives = 11/39 (28%), Gaps = 3/39 (7%)
Query: 363 DLRETDSGLYTCTASSESGETSWSASLSV---EPRPGPH 398
L+ D +Y + G+ + E P
Sbjct: 72 HLKTDDQDIYKVSIYDTKGKNVLEKIFDLKIQERVSKPK 110
>2bk8_A Connectin, M1, titin heart isoform N2-B; IG domain, M-BAND,
structural protein, muscle, antibo; 1.69A {Homo sapiens}
Length = 97
Score = 73.1 bits (180), Expect = 4e-16
Identities = 21/92 (22%), Positives = 40/92 (43%), Gaps = 5/92 (5%)
Query: 76 SEPSDATVLSGSVVEFVCRVGGDPLPT-ILWRRDDGKM-PTGRAKILDD---RSLQIENV 130
+ A G V++VC++ T + W ++ + + +I + L ++++
Sbjct: 6 GQIMHAVGEEGGHVKYVCKIENYDQSTQVTWYFGVRQLENSEKYEITYEDGVAILYVKDI 65
Query: 131 GPQDEGLYICDVENLVGSISLRASLTVHLLRD 162
D+G Y C V N G S A L V +R+
Sbjct: 66 TKLDDGTYRCKVVNDYGEDSSYAELFVKGVRE 97
Score = 54.2 bits (131), Expect = 2e-09
Identities = 16/81 (19%), Positives = 28/81 (34%), Gaps = 9/81 (11%)
Query: 259 RLSCFAEGSPLPS-VFWTQEGSQVLMFPGNAYGHLHVTQEG---TLRIQGVQKEDAGFFV 314
+ C E + V W Q+ +T E L ++ + K D G +
Sbjct: 20 KYVCKIENYDQSTQVTWYFGVRQL-----ENSEKYEITYEDGVAILYVKDITKLDDGTYR 74
Query: 315 CSALSVAGSTTVRAFLQVREF 335
C ++ G + A L V+
Sbjct: 75 CKVVNDYGEDSSYAELFVKGV 95
Score = 41.9 bits (99), Expect = 4e-05
Identities = 11/30 (36%), Positives = 16/30 (53%)
Query: 363 DLRETDSGLYTCTASSESGETSWSASLSVE 392
D+ + D G Y C ++ GE S A L V+
Sbjct: 64 DITKLDDGTYRCKVVNDYGEDSSYAELFVK 93
Score = 34.6 bits (80), Expect = 0.015
Identities = 6/47 (12%), Positives = 13/47 (27%), Gaps = 3/47 (6%)
Query: 164 FRAEPKDTRVASGETALLECGPPKGQPEPT-LHWKKNGQFIDLESSK 209
+ G C + + T + W + ++ S K
Sbjct: 4 VSGQIMHAVGEEGGHVKYVC-KIENYDQSTQVTWYFGVRQLE-NSEK 48
>2cr6_A KIAA1556 protein, obscurin; IG-fold, immunoglobulin domain,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 115
Score = 73.6 bits (181), Expect = 5e-16
Identities = 19/99 (19%), Positives = 28/99 (28%), Gaps = 9/99 (9%)
Query: 75 ISEPSDATVLSGSVVEFVCRVGGDPLPTILWRRDDGKM-PTGRAKILDD----RSLQIEN 129
I + D V GS F CR+ + W D + +I L +
Sbjct: 17 IEDLEDVDVQEGSSATFRCRISPANYEPVHWFLDKTPLHANELNEIDAQPGGYHVLTLRQ 76
Query: 130 VGPQDEGLYICDVENLVGSISLRASLTVHLLRDDFRAEP 168
+ +D G G A+L V F
Sbjct: 77 LALKDSGTIYF----EAGDQRASAALRVTEKPSVFSRSG 111
Score = 49.7 bits (119), Expect = 1e-07
Identities = 16/96 (16%), Positives = 27/96 (28%), Gaps = 21/96 (21%)
Query: 259 RLSCFAEGSPLPSVFWTQEGSQVLMFPGNAY------GHLHVTQEGTLRIQGVQKEDAGF 312
C + V W + + + G H L ++ + +D+G
Sbjct: 32 TFRCRISPANYEPVHWFLDKTPL--HANELNEIDAQPGGYH-----VLTLRQLALKDSGT 84
Query: 313 FVCSALSVAGSTTVRAFLQVREFCVLPKGTFTLGQP 348
AG A L+V E F+ P
Sbjct: 85 IYF----EAGDQRASAALRVTE----KPSVFSRSGP 112
Score = 47.8 bits (114), Expect = 5e-07
Identities = 10/49 (20%), Positives = 16/49 (32%), Gaps = 1/49 (2%)
Query: 153 ASLTVHLLRDDFRAEPKDTRVASGETALLECGPPKGQPEPTLHWKKNGQ 201
+S V R + +D V G +A C +HW +
Sbjct: 5 SSGLVQGRRVHIIEDLEDVDVQEGSSATFRCR-ISPANYEPVHWFLDKT 52
Score = 39.3 bits (92), Expect = 4e-04
Identities = 14/45 (31%), Positives = 17/45 (37%), Gaps = 5/45 (11%)
Query: 363 DLRETDSGLYTCTASSESGETSWSASLSVEPRPGPHAVHRMPDSG 407
L DSG A G+ SA+L V +P P SG
Sbjct: 76 QLALKDSGTIYFEA----GDQRASAALRVTEKP-SVFSRSGPSSG 115
>3so5_A LIG-3, leucine-rich repeats and immunoglobulin-like DOMA protein 3;
structural genomics, joint center for struct genomics,
JCSG; HET: MLY MSE; 1.70A {Mus musculus}
Length = 112
Score = 73.2 bits (179), Expect = 5e-16
Identities = 26/104 (25%), Positives = 38/104 (36%), Gaps = 17/104 (16%)
Query: 72 PFP--ISEPSDATVLSGSVVEFVCRVGGDPLP--TILWRRDDGKMP------------TG 115
P P +P + + GS V F C T W D+ + G
Sbjct: 9 PXPQITVQPETQSAIXGSDVSFTCSAASSSDSPMTFAWXXDNEALQDAEMENYAHLRAQG 68
Query: 116 RAKILDDRSLQIENVGPQDEGLYICDVENLVGSI-SLRASLTVH 158
+ L++ NV EG Y C + N GS S+ A LT++
Sbjct: 69 GELMEYTTILRLRNVEFTSEGXYQCVISNHFGSSYSVXAXLTIN 112
Score = 51.6 bits (123), Expect = 2e-08
Identities = 16/83 (19%), Positives = 28/83 (33%), Gaps = 9/83 (10%)
Query: 259 RLSCFAEGSPLPSVFWT--------QEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDA 310
+C A S + + Q+ A G + LR++ V+
Sbjct: 29 SFTCSAASSSDSPMTFAWXXDNEALQDAEMENYAHLRAQGGELMEYTTILRLRNVEFTSE 88
Query: 311 GFFVCSALSVAGSTT-VRAFLQV 332
G + C + GS+ V A L +
Sbjct: 89 GXYQCVISNHFGSSYSVXAXLTI 111
Score = 32.0 bits (72), Expect = 0.16
Identities = 5/44 (11%), Positives = 10/44 (22%), Gaps = 5/44 (11%)
Query: 164 FRAEPKDTRVASGETALLEC---GPPKGQPEPTLHWKKNGQFID 204
+P+ G C T W + + +
Sbjct: 13 ITVQPETQSAIXGSDVSFTCSAASSSD--SPMTFAWXXDNEALQ 54
Score = 31.2 bits (70), Expect = 0.27
Identities = 9/30 (30%), Positives = 14/30 (46%), Gaps = 1/30 (3%)
Query: 363 DLRETDSGLYTCTASSESGE-TSWSASLSV 391
++ T G Y C S+ G S A L++
Sbjct: 82 NVEFTSEGXYQCVISNHFGSSYSVXAXLTI 111
>2edd_A Netrin receptor DCC; tumor suppressor protein DCC, colorectal
cancer suppressor, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 123
Score = 73.4 bits (180), Expect = 6e-16
Identities = 28/126 (22%), Positives = 45/126 (35%), Gaps = 16/126 (12%)
Query: 380 SGETSWSASLSVEPRPGPHAVHRMPDSGLFPGPPAAPVILNTTRGSVTLGWGEPE-PRGG 438
SG + + S+ P PP + T +V + W + P+
Sbjct: 3 SGSSGFPTSVPDLSTP--------------MLPPVGVQAVALTHDAVRVSWADNSVPKNQ 48
Query: 439 GVAPVIGYTVEYFSSDLQTGWVVAAHRITSTSITVSDLKPDTSYMFIVRAENSHGLGIPS 498
+ V YTV + +S + + TS S T + LKP+T Y F V + S
Sbjct: 49 KTSEVRLYTVRWRTSFSASAKYKSED-TTSLSYTATGLKPNTMYEFSVMVTKNRRSSTWS 107
Query: 499 PVSPIT 504
+ T
Sbjct: 108 MTAHAT 113
Score = 31.4 bits (71), Expect = 0.31
Identities = 10/19 (52%), Positives = 12/19 (63%)
Query: 600 ATTTSYTVTHLRKFTKYEF 618
T+ SYT T L+ T YEF
Sbjct: 75 TTSLSYTATGLKPNTMYEF 93
>1x5a_A Ephrin type-A receptor 1; tyrosine-protein kinase receptor, ESK,
fibronectin type III (FN3) domain, structural genomics,
NPPSFA; NMR {Mus musculus} SCOP: b.1.2.1
Length = 107
Score = 72.9 bits (179), Expect = 6e-16
Identities = 19/97 (19%), Positives = 34/97 (35%), Gaps = 9/97 (9%)
Query: 410 PGPPAAPVI--LNTTRGSVTLGWGEPEPRGGGVAPVIGYTVEYFSSDLQTGWVVAAHRIT 467
+ + + + L W PR G + Y + + D + +V
Sbjct: 8 AESLSGLSLKLVKKEPRQLELTWAGSRPRNPG--GNLSYELHVLNQDEEWHQMV-----L 60
Query: 468 STSITVSDLKPDTSYMFIVRAENSHGLGIPSPVSPIT 504
+ ++ L+PDT+Y+ VR G G SP
Sbjct: 61 EPRVLLTKLQPDTTYIVRVRTLTPLGPGPFSPDHEFR 97
>3k2m_C Monobody HA4; engineered binding protein, antibody mimic,
protein-protein SH2 domain, ATP-binding, phosphoprotein;
1.75A {Homo sapiens} PDB: 3uyo_D 1ttf_A 1ttg_A 3rzw_A
1fna_A
Length = 101
Score = 72.5 bits (178), Expect = 7e-16
Identities = 20/97 (20%), Positives = 32/97 (32%), Gaps = 4/97 (4%)
Query: 410 PGPPAAPVILNTTRGSVTLGWGEPEPRGGGVAPVIGYTVEYFSSDLQTGWVVAAHRITST 469
P ++ T S+ + W P V Y + Y + + +S+
Sbjct: 5 SSVPTKLEVVAATPTSLLISWDAPMSSS----SVYYYRITYGETGGNSPVQEFTVPYSSS 60
Query: 470 SITVSDLKPDTSYMFIVRAENSHGLGIPSPVSPITRT 506
+ T+S L P Y V A G SPI+
Sbjct: 61 TATISGLSPGVDYTITVYAWGEDSAGYMFMYSPISIN 97
Score = 27.8 bits (62), Expect = 4.2
Identities = 9/78 (11%), Positives = 25/78 (32%), Gaps = 20/78 (25%)
Query: 575 ELIPTASTAVRITWE---------KY-----------NMATVMNAATTTSYTVTHLRKFT 614
E++ T++ I+W+ Y + ++++ T++ L
Sbjct: 12 EVVAATPTSLLISWDAPMSSSSVYYYRITYGETGGNSPVQEFTVPYSSSTATISGLSPGV 71
Query: 615 KYEFFLVPFFKTVEGARL 632
Y + + + G
Sbjct: 72 DYTITVYAWGEDSAGYMF 89
>1x5i_A Neogenin; RGM binding, fibronectin type III domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
b.1.2.1
Length = 126
Score = 73.3 bits (180), Expect = 8e-16
Identities = 24/104 (23%), Positives = 43/104 (41%), Gaps = 6/104 (5%)
Query: 403 MPDSGLFPGPPAAPVILNTTRGSVTLGWGEPEPRGGGVAPVIGYTVEYFSSDLQTGWVVA 462
D P P++ + + S+ + W PE + V GY + Y +
Sbjct: 21 DLDETRVPEVPSS-LHVRPLVTSIVVSWTPPENQNI---VVRGYAIGYGIGSPHAQTIKV 76
Query: 463 AHRITSTSITVSDLKPDTSYMFIVRAENSHGLGIPSPVSPITRT 506
++ T+ +L P + Y+ ++A N+ G GIP S +TR
Sbjct: 77 DYKQRYY--TIENLDPSSHYVITLKAFNNVGEGIPLYESAVTRP 118
Score = 28.6 bits (64), Expect = 2.7
Identities = 6/36 (16%), Positives = 12/36 (33%), Gaps = 2/36 (5%)
Query: 585 RITWEKYN--MATVMNAATTTSYTVTHLRKFTKYEF 618
I + + T+ YT+ +L + Y
Sbjct: 61 AIGYGIGSPHAQTIKVDYKQRYYTIENLDPSSHYVI 96
>2ede_A Netrin receptor DCC; tumor suppressor protein DCC, colorectal
cancer suppressor, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 114
Score = 72.8 bits (179), Expect = 8e-16
Identities = 26/102 (25%), Positives = 40/102 (39%), Gaps = 11/102 (10%)
Query: 411 GPPAAPVIL-----NTTRGSVTLGWGEPEPRGGGVAPVIGYTVEY--FSSDLQTGWVVAA 463
GP +AP L +V + W P G + Y + Y + W++
Sbjct: 7 GPTSAPKDLTVITREGKPRAVIVSWQPPLEANG---KITAYILFYTLDKNIPIDDWIMET 63
Query: 464 HRITSTSITVSDLKPDTSYMFIVRAENSHGLGIPS-PVSPIT 504
+ + DL DT Y F ++A NS G+G S P+ T
Sbjct: 64 ISGDRLTHQIMDLNLDTMYYFRIQARNSKGVGPLSDPILFRT 105
Score = 27.7 bits (62), Expect = 5.3
Identities = 4/19 (21%), Positives = 7/19 (36%)
Query: 600 ATTTSYTVTHLRKFTKYEF 618
++ + L T Y F
Sbjct: 66 GDRLTHQIMDLNLDTMYYF 84
>1x5z_A Receptor-type tyrosine-protein phosphatase delta; fibronectin type
III domain containing protein, structural genomics,
NPPSFA; NMR {Homo sapiens} SCOP: b.1.2.1
Length = 115
Score = 72.8 bits (179), Expect = 9e-16
Identities = 25/124 (20%), Positives = 39/124 (31%), Gaps = 19/124 (15%)
Query: 381 GETSWSASLSVEPRPGPHAVHRMPDSGLFPGPPAAPVILNTTRGSVTLGWGEPEPRGGGV 440
G + S + V + G PG P + S+ L W P
Sbjct: 1 GSSGSSGDIQVITQTGV------------PGQPLNFKAEPESETSILLSWTPPRS----- 43
Query: 441 APVIGYTVEYFSSDLQTGWVVAAHRITSTSITVSDLKPDTSYMFIVRAENSHGLGIPSPV 500
+ Y + Y + G TS + LKP++ Y F + A + GLG +
Sbjct: 44 DTIANYELVYKDGE--HGEEQRITIEPGTSYRLQGLKPNSLYYFRLAARSPQGLGASTAE 101
Query: 501 SPIT 504
Sbjct: 102 ISAR 105
Score = 33.5 bits (77), Expect = 0.057
Identities = 11/66 (16%), Positives = 22/66 (33%), Gaps = 18/66 (27%)
Query: 570 VVNLRELIPTASTAVRITWEK--------Y---------NMATVMNAATTTSYTVTHLRK 612
+N + P + T++ ++W Y + TSY + L+
Sbjct: 21 PLNFK-AEPESETSILLSWTPPRSDTIANYELVYKDGEHGEEQRITIEPGTSYRLQGLKP 79
Query: 613 FTKYEF 618
+ Y F
Sbjct: 80 NSLYYF 85
>2gee_A Hypothetical protein; fibronectin, EIIIB, cancer,
neovascularization, cell adhesion, protein binding,
oncoprotein; 2.01A {Homo sapiens} PDB: 2fnb_A
Length = 203
Score = 74.9 bits (184), Expect = 1e-15
Identities = 29/220 (13%), Positives = 59/220 (26%), Gaps = 48/220 (21%)
Query: 410 PGPPAAPVILNTTRGSVTLGWGEPEPRGGGVAPVIGYTVEYFSSDLQTGWVVAAHRITST 469
P ++ T S+ L W + +IGY + ++ +
Sbjct: 23 VPQPTDLSFVDITDSSIGLRWTPLNS-----STIIGYRITVVAAGEGIPIFEDFVDSSVG 77
Query: 470 SITVSDLKPDTSYMFIVRAENSHGLGIPSPVSPITRTLGLNSLVPQHLLDEARARLGTKV 529
TV+ L+P Y V + G P+ ++ T P L
Sbjct: 78 YYTVTGLEPGIDYDISVYTVKNGGESTPTTLTQQTAVPP-----PTDL------------ 120
Query: 530 VNLRELIPTASTAVRITWEVSWGSVPQHLLDEARARLGTKVVNLRELIPTASTAVRITWE 589
+R+TW V
Sbjct: 121 ----RFTNIGPDTMRVTWAPPPSIDLT----------NFLVR------------YSPVKN 154
Query: 590 KYNMATVMNAATTTSYTVTHLRKFTKYEFFLVPFFKTVEG 629
+ ++A + + + + +T+L T+Y + ++ E
Sbjct: 155 EEDVAELSISPSDNAVVLTNLLPGTEYVVSVSSVYEQHES 194
Score = 64.1 bits (156), Expect = 6e-12
Identities = 14/97 (14%), Positives = 32/97 (32%), Gaps = 7/97 (7%)
Query: 410 PGPPAAPVILNTTRGSVTLGWGEPEPRGGGVAPVIGYTVEYFSSDLQTGWVVAAHRITST 469
PP N ++ + W P + + V Y + + +
Sbjct: 114 VPPPTDLRFTNIGPDTMRVTWAPPPS-----IDLTNFLVRYSPVKNEEDVAELSISPSDN 168
Query: 470 SITVSDLKPDTSYMFIVRAENSHGLGIPSPVSPITRT 506
++ +++L P T Y+ V + +P+ +T
Sbjct: 169 AVVLTNLLPGTEYVVSVSSVYEQHES--TPLRGRQKT 203
Score = 32.9 bits (75), Expect = 0.18
Identities = 10/69 (14%), Positives = 21/69 (30%), Gaps = 19/69 (27%)
Query: 581 STAVRITWEKYNMATVMN-------------------AATTTSYTVTHLRKFTKYEFFLV 621
+++ + W N +T++ ++ YTVT L Y+ +
Sbjct: 36 DSSIGLRWTPLNSSTIIGYRITVVAAGEGIPIFEDFVDSSVGYYTVTGLEPGIDYDISVY 95
Query: 622 PFFKTVEGA 630
E
Sbjct: 96 TVKNGGEST 104
>2edb_A Netrin receptor DCC; tumor suppressor protein DCC, colorectal
cancer suppressor, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 116
Score = 72.1 bits (177), Expect = 1e-15
Identities = 19/97 (19%), Positives = 37/97 (38%), Gaps = 6/97 (6%)
Query: 410 PGPPAAPVILNTTRGSVTLGWGEPEPRGGGVAPVIGYTVEYFSSDLQTGWVVAAHRITST 469
P P++ + + + + W P V GY + Y V +
Sbjct: 18 PDQPSS-LHVRPQTNCIIMSWTPPLNPNI---VVRGYIIGYGVGSPYAETVRVDSKQRYY 73
Query: 470 SITVSDLKPDTSYMFIVRAENSHGLGIPSPVSPITRT 506
++ L+ + Y+ ++A N+ G G+P S TR+
Sbjct: 74 --SIERLESSSHYVISLKAFNNAGEGVPLYESATTRS 108
Score = 28.6 bits (64), Expect = 2.3
Identities = 5/27 (18%), Positives = 9/27 (33%)
Query: 592 NMATVMNAATTTSYTVTHLRKFTKYEF 618
TV + Y++ L + Y
Sbjct: 60 YAETVRVDSKQRYYSIERLESSSHYVI 86
>3b83_A Ten-D3; beta sheet, computational redesigned protein, alternative
splicing, cell adhesion, coiled coil, EGF-like domain,
extracellular matrix; 2.40A {Homo sapiens}
Length = 100
Score = 71.3 bits (175), Expect = 2e-15
Identities = 23/98 (23%), Positives = 39/98 (39%), Gaps = 8/98 (8%)
Query: 412 PPAAPVILNTTRGSVTLGWGEPEPRGGGVAPVIGYTVEYFSSDLQTGWVVAAHRITSTSI 471
PP + N T + + W P P+ G V + + + + TS+
Sbjct: 4 PPFNIKVTNITLTTAVVTWQPPI------LPIEGILVTFGRKNDPSDETTVDLTSSITSL 57
Query: 472 TVSDLKPDTSYMFIVRAENSHGLGIPSPVSPITRTLGL 509
T+++L+P+T+Y + A N PVS T L
Sbjct: 58 TLTNLEPNTTYEIRIVARNGQQYS--PPVSTTFTTGSL 93
Score = 29.3 bits (66), Expect = 1.3
Identities = 13/56 (23%), Positives = 20/56 (35%), Gaps = 18/56 (32%)
Query: 581 STAVRITWEK-------Y-----------NMATVMNAATTTSYTVTHLRKFTKYEF 618
T +TW+ + TV ++ TS T+T+L T YE
Sbjct: 15 LTTAVVTWQPPILPIEGILVTFGRKNDPSDETTVDLTSSITSLTLTNLEPNTTYEI 70
>2fbo_J V1V2;, variable region-containing chitin-binding protein 3;
immunoglobulin, VCBP, V-type, V SET, immune system;
1.85A {Branchiostoma floridae}
Length = 250
Score = 75.7 bits (185), Expect = 2e-15
Identities = 17/112 (15%), Positives = 26/112 (23%), Gaps = 25/112 (22%)
Query: 71 KPFPISEPSDATVLSGSVVEFVCRVGGDPLPTILWRRDDGKMP----------------- 113
+S V G+ + C + W
Sbjct: 136 NNVHVSTAEVVQVDEGNDITMTCPCTDCANANVTWYTGPTFFENYETGTYQPLANKNQFG 195
Query: 114 --------TGRAKILDDRSLQIENVGPQDEGLYICDVENLVGSISLRASLTV 157
GRA R+L I D G C++ G + S T+
Sbjct: 196 ITWFSSEIAGRASFSGARNLVIRAAKITDAGRVWCELATGQGELDADRSSTI 247
Score = 74.9 bits (183), Expect = 3e-15
Identities = 30/173 (17%), Positives = 48/173 (27%), Gaps = 45/173 (26%)
Query: 76 SEPSDATVLSGSVVEFVCRV---GGDPLPTILWRRDDG---------------------- 110
+ ++ V +G VE C P I W +
Sbjct: 7 TTHTEVEVHAGGTVELPCSYQLANDTQPPVISWLKGASPDRSTKVFKGNYNWQGEGLGFV 66
Query: 111 ---------KMPTGRAKI--LDDRSLQIENVGPQDEGLYICDVENL-----VGSISLRAS 154
GRA + L +L++ +V PQD G Y C V G +
Sbjct: 67 ESDSYKESFGDFLGRASVANLAAPTLRLTHVHPQDGGRYWCQVAQWSIRTEFGLDAKSVV 126
Query: 155 LTVHLL---RDDFRAEPKDTRVASGETALLECGPPKGQPEPTLHWKKNGQFID 204
L V + + + +V G + C P + W F +
Sbjct: 127 LKVTGHTPSNNVHVSTAEVVQVDEGNDITMTC-PCTDCANANVTWYTGPTFFE 178
Score = 67.6 bits (164), Expect = 1e-12
Identities = 27/242 (11%), Positives = 48/242 (19%), Gaps = 74/242 (30%)
Query: 165 RAEPKDTRVASGETALLEC--GPPKGQPEPTLHWKKNGQFIDLESSKSLDLSRRTLGWLR 222
R + V +G T L C P + W K + + + G
Sbjct: 6 RTTHTEVEVHAGGTVELPCSYQLANDTQPPVISWLKGASPDRSTKVFKGNYNWQGEGLGF 65
Query: 223 VRPL-----------------------------------YWNVARPRANLNP-------- 239
V YW +
Sbjct: 66 VESDSYKESFGDFLGRASVANLAAPTLRLTHVHPQDGGRYWCQVAQWSIRTEFGLDAKSV 125
Query: 240 --RYIGRKMASLLIWNHPRVN--------RLSCFAEGSPLPSVFWTQEGSQV-------- 281
+ G ++ + + V ++C +V W +
Sbjct: 126 VLKVTGHTPSNNVHVSTAEVVQVDEGNDITMTCPCTDCANANVTWYTGPTFFENYETGTY 185
Query: 282 -----------LMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRAFL 330
F G + L I+ + DAG C + G
Sbjct: 186 QPLANKNQFGITWFSSEIAGRASFSGARNLVIRAAKITDAGRVWCELATGQGELDADRSS 245
Query: 331 QV 332
+
Sbjct: 246 TI 247
Score = 32.2 bits (72), Expect = 0.40
Identities = 19/152 (12%), Positives = 35/152 (23%), Gaps = 31/152 (20%)
Query: 363 DLRETDSGLYTCTAS-----SESGETSWSASLSVEPRPGPHAVHRMPDSGLFPGPPAAPV 417
+ D G Y C + +E G + S L V + VH V
Sbjct: 96 HVHPQDGGRYWCQVAQWSIRTEFGLDAKSVVLKVTGHTPSNNVHVSTAE----------V 145
Query: 418 ILNTTRGSVTL---GWGEPEPR------GGGVAPVIGYTVEYFSSDLQTGWVVA------ 462
+ +T+ T + ++ Q G
Sbjct: 146 VQVDEGNDITMTCPCTDCANANVTWYTGPTFFENYETGTYQPLANKNQFGITWFSSEIAG 205
Query: 463 -AHRITSTSITVSDLKPDTSYMFIVRAENSHG 493
A + ++ + K + G
Sbjct: 206 RASFSGARNLVIRAAKITDAGRVWCELATGQG 237
>1v5j_A KIAA1355 protein, RSGI RUH-008; FN3 domain, human cDNA, structural
genomics, riken structural genomics/proteomics
initiative, cell adhesion; NMR {Homo sapiens} SCOP:
b.1.2.1
Length = 108
Score = 71.5 bits (175), Expect = 2e-15
Identities = 23/102 (22%), Positives = 36/102 (35%), Gaps = 10/102 (9%)
Query: 410 PGPPAAP---VILNTTRGSVTLGWGEPEPRGGGVAPVIGYTVEYFSSDLQTGWVVAAHRI 466
+P ++ T V L W PE + GY +E GW V +
Sbjct: 4 GSSGLSPPRGLVAVRTPRGVLLHWDPPELVP---KRLDGYVLEG--RQGSQGWEVLDPAV 58
Query: 467 --TSTSITVSDLKPDTSYMFIVRAENSHGLGIPSPVSPITRT 506
T T + V L D Y F + A + PS + ++ +
Sbjct: 59 AGTETELLVPGLIKDVLYEFRLVAFAGSFVSDPSNTANVSTS 100
Score = 28.0 bits (62), Expect = 4.0
Identities = 12/32 (37%), Positives = 13/32 (40%), Gaps = 3/32 (9%)
Query: 587 TWEKYNMATVMNAATTTSYTVTHLRKFTKYEF 618
WE + A A T T V L K YEF
Sbjct: 50 GWEVLDPAV---AGTETELLVPGLIKDVLYEF 78
>2dku_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 103
Score = 70.8 bits (174), Expect = 3e-15
Identities = 21/94 (22%), Positives = 34/94 (36%), Gaps = 9/94 (9%)
Query: 75 ISEPSDATVLSGSVVEFVCRVGGDPLPTILWRRDDGKM-PTGRAKILDD---RSLQIENV 130
E ++ V F C+ P T+ WR+ ++ +G+ + + L I +
Sbjct: 12 TEELTNLQVEEKGTAVFTCKTE-HPAATVTWRKGLLELRASGKHQPSQEGLTLRLTISAL 70
Query: 131 GPQDEGLYICDVENLVGSISLRASLTVHLLRDDF 164
D Y CD +G RA L V R
Sbjct: 71 EKADSDTYTCD----IGQAQSRAQLLVQGRRSGP 100
Score = 46.9 bits (112), Expect = 7e-07
Identities = 18/79 (22%), Positives = 29/79 (36%), Gaps = 13/79 (16%)
Query: 259 RLSCFAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEG---TLRIQGVQKEDAGFFVC 315
+C P +V W + ++ G +QEG L I ++K D+ + C
Sbjct: 27 VFTCKT-EHPAATVTWRKGLLEL--RAS---GKHQPSQEGLTLRLTISALEKADSDTYTC 80
Query: 316 SALSVAGSTTVRAFLQVRE 334
G RA L V+
Sbjct: 81 ----DIGQAQSRAQLLVQG 95
Score = 39.6 bits (93), Expect = 3e-04
Identities = 12/46 (26%), Positives = 19/46 (41%), Gaps = 4/46 (8%)
Query: 164 FRAEPKDTRVASGETALLECGPPKGQPEPTLHWKKNGQFIDLESSK 209
F E + +V TA+ C P T+ W+K +L +S
Sbjct: 11 FTEELTNLQVEEKGTAVFTC--KTEHPAATVTWRKGLL--ELRASG 52
Score = 35.8 bits (83), Expect = 0.005
Identities = 14/45 (31%), Positives = 17/45 (37%), Gaps = 10/45 (22%)
Query: 363 DLRETDSGLYTCTASSESGETSWSASLSVEPRPGPHAVHRMPDSG 407
L + DS YTC G+ A L V+ R P SG
Sbjct: 69 ALEKADSDTYTCDI----GQAQSRAQLLVQGRRSG------PSSG 103
>3l5i_A Interleukin-6 receptor subunit beta; cytokine receptor, fibronectin
type III domain, alternative cell membrane, disulfide
bond; 1.90A {Homo sapiens} PDB: 3l5j_A
Length = 290
Score = 76.0 bits (187), Expect = 3e-15
Identities = 26/224 (11%), Positives = 59/224 (26%), Gaps = 49/224 (21%)
Query: 410 PGPPAAPVILNTTRG----SVTLGWGEPEPRGGGVAPVIGYTVEYFSSDLQTGWVVAAHR 465
P+ ++ + +V L W P ++ Y V W
Sbjct: 5 SKAPSFWYKIDPSHTQGYRTVQLVWKTLPPFEAN-GKILDYEVTLTR------WKSHLQN 57
Query: 466 ITSTSITVSDLKPDTSYMFIVRAENSHGLGIPSPVSPITRTLGLNSLVPQHLLDEARARL 525
T + ++ + Y+ + N G + + + P
Sbjct: 58 YTVNATKLTVNLTNDRYLATLTVRNLVGKSDAAVL--TIPACDFQATHP----------- 104
Query: 526 GTKVVNLRELIPTASTAVRITWEVSWGSVPQHLLDEARARLGTKVVNLRELIPTASTAVR 585
V++L+ + + W SV ++ ++ L A
Sbjct: 105 ---VMDLK--AFPKDNMLWVEWTTPRESVKKY------------ILEWCVLSDKAPC--I 145
Query: 586 ITWEKYNMATVMNAATTTSYTVTHLRKFTKYEFFLVPFFKTVEG 629
W++ + +Y +L + Y + P + G
Sbjct: 146 TDWQQ------EDGTVHRTYLRGNLAESKCYLITVTPVYADGPG 183
Score = 67.1 bits (164), Expect = 2e-12
Identities = 31/226 (13%), Positives = 57/226 (25%), Gaps = 45/226 (19%)
Query: 395 PGPHAVHRMPDSGLFPGPPAAPVILNTTRGSVTLGWGEPEPRGGGVAPVIGYTVEYFSSD 454
AV +P P + + + W P ++ + V +
Sbjct: 86 KSDAAVLTIPACDFQATHPVMDLKAFPKDNMLWVEWTTPRESVKK--YILEWCVLSDKAP 143
Query: 455 LQTGWVVAAHRITSTSITVSDLKPDTSYMFIVRAENSHGLGIPSPVSPITRTLGLNSLVP 514
T W + +L Y+ V + G G P + + P
Sbjct: 144 CITDWQQE-DGTVHRTYLRGNLAESKCYLITVTPVYADGPGSPESIKAYLK-----QAPP 197
Query: 515 QHLLDEARARLGTKVVNLRELIPTASTAVRITWEVSWGSVPQHLLDEARARLGTKVVNLR 574
+K +R + A + W +P +D +
Sbjct: 198 ------------SKGPTVRTKKVGKNEA-----VLEWDQLP---VDVQNGFI-------- 229
Query: 575 ELIPTASTAVRITWEKY--NMATVMNAATTTSYTVTHLRKFTKYEF 618
I + N V ++ T YT++ L T Y
Sbjct: 230 -------RNYTIFYRTIIGNETAVNVDSSHTEYTLSSLTSDTLYMV 268
Score = 63.7 bits (155), Expect = 3e-11
Identities = 19/95 (20%), Positives = 28/95 (29%), Gaps = 3/95 (3%)
Query: 410 PGPPAAPVILNTTRGSVTLGWGEPEPRGGGVAPVIGYTVEYFSSDLQTGWVVAAHRITST 469
P + L W + P + YT+ Y + V + T
Sbjct: 197 PSKGPTVRTKKVGKNEAVLEWDQL-PVDVQNGFIRNYTIFYRTIIGNETAVN--VDSSHT 253
Query: 470 SITVSDLKPDTSYMFIVRAENSHGLGIPSPVSPIT 504
T+S L DT YM + A G + T
Sbjct: 254 EYTLSSLTSDTLYMVRMAAYTDEGGKDGPEFTFTT 288
>3b5h_A Cervical EMMPRIN, HAB18G/CD147; IG-like domain, cell invasion;
2.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4
Length = 184
Score = 73.1 bits (179), Expect = 3e-15
Identities = 22/137 (16%), Positives = 36/137 (26%), Gaps = 15/137 (10%)
Query: 81 ATVLSGSVVEFVCRVGGDPLPTI--LWRRDDGKMPTGRAKILDDRSLQIENVGPQDEGLY 138
GS + C + W + + L + + + G Y
Sbjct: 8 TVEDLGSKILLTCSLNDSATEVTGHRWLKGGVVLKEDA---LPGQKTEFKVDSDDQWGEY 64
Query: 139 ICDVENLVGSISLRASLTVHLLRDDFRAEPKDTRVASGETALLEC---GPPKGQPEPTLH 195
C A++ +H +A + GETA+L C P P
Sbjct: 65 SCVFLP---EPMGTANIQLH-GPPRVKAVKSSEHINEGETAMLVCKSESVP---PVTDWA 117
Query: 196 WKKNGQFIDLESSKSLD 212
W K D +
Sbjct: 118 WYKITDSEDKALMNGSE 134
Score = 67.0 bits (163), Expect = 4e-13
Identities = 21/104 (20%), Positives = 32/104 (30%), Gaps = 12/104 (11%)
Query: 67 EALIKPFPISEPSDATVLSGSVVEFVCRVGGDPLPT-ILWRRDDGKMPTGRAKILDDR-- 123
+ P + S + G VC+ P T W + + R
Sbjct: 79 QLHGPPRVKAVKSSEHINEGETAMLVCKSESVPPVTDWAWYKITDSEDKALMNGSESRFF 138
Query: 124 --------SLQIENVGPQ-DEGLYICDVENLVGSISLRASLTVH 158
L IEN+ + D G Y C+ + GS +L V
Sbjct: 139 VSSSQGRSELHIENLNMEADPGQYRCNGTSSKGSDQAIITLRVR 182
Score = 60.4 bits (146), Expect = 1e-10
Identities = 29/181 (16%), Positives = 48/181 (26%), Gaps = 28/181 (15%)
Query: 173 VASGETALLEC---GPPKGQPEPTLHWKKNGQFIDLESSKSLDLSRRTLGWLRVRP---- 225
G LL C W K G + ++ + +
Sbjct: 10 EDLGSKILLTCSLNDSAT--EVTGHRWLKGGVVLKEDALPG-----QKTEFKVDSDDQWG 62
Query: 226 ----LYWNVARPRANLN---PRYIGRKMASLLIWNHPRVNRLSCFAEGSPLP-SVFWTQE 277
++ AN+ P + +S I L C +E P W +
Sbjct: 63 EYSCVFLPEPMGTANIQLHGPPRVKAVKSSEHINEGETA-MLVCKSESVPPVTDWAWYKI 121
Query: 278 GSQVLMFPGNA----YGHLHVTQEGTLRIQGVQ-KEDAGFFVCSALSVAGSTTVRAFLQV 332
N + L I+ + + D G + C+ S GS L+V
Sbjct: 122 TDSEDKALMNGSESRFFVSSSQGRSELHIENLNMEADPGQYRCNGTSSKGSDQAIITLRV 181
Query: 333 R 333
R
Sbjct: 182 R 182
Score = 52.3 bits (125), Expect = 5e-08
Identities = 21/174 (12%), Positives = 34/174 (19%), Gaps = 50/174 (28%)
Query: 259 RLSCFAEGSPLP--SVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCS 316
L+C S W + G + + + G + C
Sbjct: 17 LLTCSLNDSATEVTGHRWLKGGVVL---------KEDALPGQKTEFKVDSDDQWGEYSCV 67
Query: 317 ALSVAGSTTVRAFLQVREFCVLP-----------------------------KGTFTLGQ 347
L T + K T + +
Sbjct: 68 FLPEPMGTANIQLHGPPRVKAVKSSEHINEGETAMLVCKSESVPPVTDWAWYKITDSEDK 127
Query: 348 PNLA----------TGNSDLRRIACDLRETDSGLYTCTASSESGETSWSASLSV 391
+ + I E D G Y C +S G +L V
Sbjct: 128 ALMNGSESRFFVSSSQGRSELHIENLNMEADPGQYRCNGTSSKGSDQAIITLRV 181
>1qr4_A Protein (tenascin); fibronectin type-III, heparin, extracellular
matrix, adhesion, fusion protein, structural protein;
2.55A {Gallus gallus} SCOP: b.1.2.1 b.1.2.1
Length = 186
Score = 73.2 bits (180), Expect = 4e-15
Identities = 28/223 (12%), Positives = 52/223 (23%), Gaps = 59/223 (26%)
Query: 410 PGPPAAPVILNTTRGSVTLGWGEPEPRGGGVAPVIGYTVEYFSSDLQTGWVVAAHRITST 469
P + + T +++L W P A Y + Y S + ST
Sbjct: 7 LDNPKDLEVSDPTETTLSLRWRRPV------AKFDRYRLTYVSPS--GKKNEMEIPVDST 58
Query: 470 SITVSDLKPDTSYMFIVRAENSHGLGIPSPVSPITRTLGLNSLVPQHLLDEARARLGTKV 529
S + L T Y + AE P+ + T P+ +
Sbjct: 59 SFILRGLDAGTEYTISLVAEKGRHKSKPTTIKGSTV-----VGSPKGI------------ 101
Query: 530 VNLRELIPTASTAVRITWEVSWGSVPQHLLDEARARLGTKVVNLRELIPTASTAVRITWE 589
+ ++W V + R+++
Sbjct: 102 ----SFSDITENSATVSWTPPRSRV---------------------------DSYRVSYV 130
Query: 590 KYN---MATVMNAATTTSYTVTHLRKFTKYEFFLVPFFKTVEG 629
V + T + L Y ++ E
Sbjct: 131 PITGGTPNVVTVDGSKTRTKLVKLVPGVDYNVNIISVKGFEES 173
Score = 63.6 bits (155), Expect = 7e-12
Identities = 22/97 (22%), Positives = 31/97 (31%), Gaps = 9/97 (9%)
Query: 410 PGPPAAPVILNTTRGSVTLGWGEPEPRGGGVAPVIGYTVEYFSSDLQTGWVVAAHRITST 469
G P + T S T+ W P + V Y V Y T VV + T
Sbjct: 95 VGSPKGISFSDITENSATVSWTPPR------SRVDSYRVSYVPITGGTPNVVTVDG-SKT 147
Query: 470 SITVSDLKPDTSYMFIVRAENSHGLGIPSPVSPITRT 506
+ L P Y + + P+S I +T
Sbjct: 148 RTKLVKLVPGVDYNVNIISVKGFEES--EPISGILKT 182
Score = 30.1 bits (68), Expect = 1.3
Identities = 10/69 (14%), Positives = 19/69 (27%), Gaps = 16/69 (23%)
Query: 581 STAVRITWEK-----------YNMA-----TVMNAATTTSYTVTHLRKFTKYEFFLVPFF 624
T + + W + Y + +TS+ + L T+Y LV
Sbjct: 20 ETTLSLRWRRPVAKFDRYRLTYVSPSGKKNEMEIPVDSTSFILRGLDAGTEYTISLVAEK 79
Query: 625 KTVEGARLD 633
+
Sbjct: 80 GRHKSKPTT 88
>2e7b_A Obscurin; IG-like domain, structural genomics, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens} PDB: 2yz8_A
Length = 103
Score = 70.4 bits (173), Expect = 4e-15
Identities = 21/88 (23%), Positives = 31/88 (35%), Gaps = 9/88 (10%)
Query: 75 ISEPSDATVLSGSVVEFVCRVGGDPLPTILWRRDDGK-MPTGRAKILDD---RSLQIENV 130
D VL G C + P + W + P + + + L + N+
Sbjct: 12 QEALKDLEVLEGGAATLRCVLSSVAAP-VKWCYGNNVLRPGDKYSLRQEGAMLELVVRNL 70
Query: 131 GPQDEGLYICDVENLVGSISLRASLTVH 158
PQD G Y C G + A+LTV
Sbjct: 71 RPQDSGRYSCS----FGDQTTSATLTVT 94
Score = 47.7 bits (114), Expect = 4e-07
Identities = 20/79 (25%), Positives = 31/79 (39%), Gaps = 13/79 (16%)
Query: 259 RLSCFAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEG---TLRIQGVQKEDAGFFVC 315
L C P V W + + PG+ Y + QEG L ++ ++ +D+G + C
Sbjct: 27 TLRCVLSSVAAP-VKWCYGNNVL--RPGDKY---SLRQEGAMLELVVRNLRPQDSGRYSC 80
Query: 316 SALSVAGSTTVRAFLQVRE 334
G T A L V
Sbjct: 81 ----SFGDQTTSATLTVTA 95
Score = 37.7 bits (88), Expect = 0.001
Identities = 16/45 (35%), Positives = 23/45 (51%), Gaps = 10/45 (22%)
Query: 363 DLRETDSGLYTCTASSESGETSWSASLSVEPRPGPHAVHRMPDSG 407
+LR DSG Y+C+ G+ + SA+L+V P P SG
Sbjct: 69 NLRPQDSGRYSCSF----GDQTTSATLTVTALPSG------PSSG 103
Score = 35.8 bits (83), Expect = 0.007
Identities = 9/42 (21%), Positives = 11/42 (26%), Gaps = 8/42 (19%)
Query: 163 DFRAEPKDTRVASGETALLEC---GPPKGQPEPTLHWKKNGQ 201
F+ KD V G A L C + W
Sbjct: 10 RFQEALKDLEVLEGGAATLRCVLSSVA-----APVKWCYGNN 46
>3l5h_A Interleukin-6 receptor subunit beta; IG-like, FNIII, cell membrane,
disulfide bond, glycoprotein, immunoglobulin domain,
membrane, phosphoprotein; HET: NAG NDG BMA FUC; 3.60A
{Homo sapiens}
Length = 589
Score = 77.4 bits (190), Expect = 5e-15
Identities = 32/224 (14%), Positives = 60/224 (26%), Gaps = 41/224 (18%)
Query: 395 PGPHAVHRMPDSGLFPGPPAAPVILNTTRGSVTLGWGEPEPRGGGVAPVIGYTVEYFSSD 454
AV +P P + + + W P ++ + V +
Sbjct: 385 KSDAAVLTIPACDFQATHPVMDLKAFPKDNMLWVEWTTPRESVKK--YILEWCVLSDKAP 442
Query: 455 LQTGWVVAAHRITSTSITVSDLKPDTSYMFIVRAENSHGLGIPSPVSPITRTLGLNSLVP 514
T W + +L Y+ V + G G P + + P
Sbjct: 443 CITDWQQE-DGTVHRTYLRGNLAESKCYLITVTPVYADGPGSPESIKAYLKQ-----APP 496
Query: 515 QHLLDEARARLGTKVVNLRELIPTASTAVRITWEVSWGSVPQHLLDEARARLGTKVVNLR 574
+K +R + AV + W +P +D + + R
Sbjct: 497 ------------SKGPTVRTKKVGKNEAV-----LEWDQLP---VDVQNGFIRNYTIFYR 536
Query: 575 ELIPTASTAVRITWEKYNMATVMNAATTTSYTVTHLRKFTKYEF 618
+I N+ + + T YT++ L T Y
Sbjct: 537 TIIG--------NETAVNVDS-----SHTEYTLSSLTSDTLYMV 567
Score = 77.0 bits (189), Expect = 7e-15
Identities = 38/332 (11%), Positives = 77/332 (23%), Gaps = 67/332 (20%)
Query: 256 RVNRLSCFAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGF-FV 314
+ + W + + ++ + +
Sbjct: 26 VLKEKCMDYFHVNANYIVWKTNHFTI----PKEQYTIINRTASSVTFTDIASLNIQLTCN 81
Query: 315 CSALSVAGSTTVRAFLQVREF--------CVL-----------------PKGTFTL---- 345
+ C++ + FTL
Sbjct: 82 ILTFGQLEQNVYGITIISGLPPEKPKNLSCIVNEGKKMRCEWDGGRETHLETNFTLKSEW 141
Query: 346 -----GQPNLATGNSDLRRIACDLRETDSGLYTCTASSESGETSWSASLSVEPRPGPHAV 400
+ + A + G+ + +
Sbjct: 142 ATHKFADCKAKRDTPTSCTVDYSTVYFVNIEVWVEAENALGKVTSDH------------I 189
Query: 401 HRMPDSGLFPGPPAAPVILNT--TRGSVTLGWGEPEPRGGGVAPVIGYTVEYFSSDLQTG 458
+ P + P PP ++N+ + L W P + ++ Y ++Y + D T
Sbjct: 190 NFDPVYKVKPNPPHNLSVINSEELSSILKLTWTNPSIKSV---IILKYNIQYRTKDASTW 246
Query: 459 WVVAAHRI--TSTSITVSDLKPDTSYMFIVRAENSHGLGIPSPVSPITRTLGLNSLVPQH 516
+ T +S TV DLKP T Y+F +R G G S S + P
Sbjct: 247 SQIPPEDTASTRSSFTVQDLKPFTEYVFRIRCMKEDGKGYWSDWSEEASGITYED-RPSK 305
Query: 517 LLDEARARLGTKVVNLRELIPTASTAVRITWE 548
+ V++ W+
Sbjct: 306 APSF--------WYKIDPSHTQGYRTVQLVWK 329
Score = 72.7 bits (178), Expect = 1e-13
Identities = 17/95 (17%), Positives = 26/95 (27%), Gaps = 3/95 (3%)
Query: 410 PGPPAAPVILNTTRGSVTLGWGEPEPRGGGVAPVIGYTVEYFSSDLQTGWVVAAHRITST 469
P + L W + + YT+ Y + + T
Sbjct: 496 PSKGPTVRTKKVGKNEAVLEWDQLPVDVQN-GFIRNYTIFY--RTIIGNETAVNVDSSHT 552
Query: 470 SITVSDLKPDTSYMFIVRAENSHGLGIPSPVSPIT 504
T+S L DT YM + A G + T
Sbjct: 553 EYTLSSLTSDTLYMVRMAAYTDEGGKDGPEFTFTT 587
Score = 65.8 bits (160), Expect = 2e-11
Identities = 30/251 (11%), Positives = 57/251 (22%), Gaps = 51/251 (20%)
Query: 376 ASSESGETSWSA-SLSVEPRPGPHAVHRMPDSGLFPGPPAAPVILNTTRGSVTLGWGEPE 434
E G+ WS S P +V L W +
Sbjct: 278 CMKEDGKGYWSDWSEEASGITYEDR----PSKA-PSFWYKIDPSHTQGYRTVQLVW-KTL 331
Query: 435 PRGGGVAPVIGYTVEYFSSDLQTGWVVAAHRITSTSITVSDLKPDTSYMFIVRAENSHGL 494
P ++ Y V + +T +TV + Y+ + N G
Sbjct: 332 PPFEANGKILDYEVTLTRWKSHLQNYT----VNATKLTV--NLTNDRYLATLTVRNLVGK 385
Query: 495 GIPSPVSPITRTLGLNSLVPQHLLDEARARLGTKVVNLRELIPTASTAVRITWEVSWGSV 554
+ ++ + P L + + W SV
Sbjct: 386 SDAAVLT--IPACDFQATHPVMDL----------------KAFPKDNMLWVEWTTPRESV 427
Query: 555 PQHLLDEARARLGTKVVNLRELIPTASTAVRITWEKYNMATVMNAATTTSYTVTHLRKFT 614
++ L A W++ + +Y +L +
Sbjct: 428 ------------KKYILEWCVLSDKAPCI--TDWQQE------DGTVHRTYLRGNLAESK 467
Query: 615 KYEFFLVPFFK 625
Y + P +
Sbjct: 468 CYLITVTPVYA 478
Score = 64.6 bits (157), Expect = 4e-11
Identities = 35/254 (13%), Positives = 71/254 (27%), Gaps = 54/254 (21%)
Query: 367 TDSGLYTCTASSESGETSWSASLSVEPRPGPHAVHRMPDSGLFPGPPAAPVILNTTRGSV 426
+ + TC + +++ SGL P P + +
Sbjct: 73 SLNIQLTCNILTFGQLEQNVYGITI-------------ISGLPPEKPKNLSCIVNEGKKM 119
Query: 427 TLGWGEPEPRGGGVAPVIGYTVEYFSSDLQTGWVVAAHRITSTSITVSDLKPDTSYMFIV 486
W +T++ + + A ++ + V
Sbjct: 120 RCEWDGGRETHL----ETNFTLKSEWATHKFADCKAKRDTPTSCTVDYSTVYFVNIEVWV 175
Query: 487 RAENSHGLGIPSPVSPITRTLGLNSLVPQHLLDEARARLGTKVVNLRELIPTASTAVRIT 546
AEN+ G ++ + P +L V+N S+ +++T
Sbjct: 176 EAENALGKVTSDHIN-FDPVYKVKPNPPHNL----------SVIN----SEELSSILKLT 220
Query: 547 WE--VSWGSVPQHLLDEARARLGTKVVNLRELIPTASTAVRITWEKYNMATVMNAATTTS 604
W + + R + + TW + A+T +S
Sbjct: 221 WTNPSIKSVIILKYNIQYRTKDAS------------------TWSQIPPEDT--ASTRSS 260
Query: 605 YTVTHLRKFTKYEF 618
+TV L+ FT+Y F
Sbjct: 261 FTVQDLKPFTEYVF 274
Score = 47.7 bits (113), Expect = 1e-05
Identities = 14/98 (14%), Positives = 30/98 (30%), Gaps = 10/98 (10%)
Query: 69 LIKPFPISEPSDATVLSGSVVEFVCRV-------GGDPLPTILWRRDDGKMPTGRAKILD 121
L+ P P V S VC + I+W+ + +P + I++
Sbjct: 1 LLDPCGYISPESPVVQLHSNFTAVCVLKEKCMDYFHVNANYIVWKTNHFTIPKEQYTIIN 60
Query: 122 DR--SLQIENVGPQDEGLYICDVENLVGSISLRASLTV 157
S+ ++ C++ +T+
Sbjct: 61 RTASSVTFTDI-ASLNIQLTCNILTFGQLEQNVYGITI 97
Score = 35.0 bits (80), Expect = 0.071
Identities = 8/58 (13%), Positives = 15/58 (25%), Gaps = 6/58 (10%)
Query: 167 EPKDTRVASGETALLEC------GPPKGQPEPTLHWKKNGQFIDLESSKSLDLSRRTL 218
P+ V C + WK N I E ++ + ++
Sbjct: 9 SPESPVVQLHSNFTAVCVLKEKCMDYFHVNANYIVWKTNHFTIPKEQYTIINRTASSV 66
>1x5j_A Neogenin; RGM binding, fibronectin type III domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
b.1.2.1
Length = 113
Score = 70.2 bits (172), Expect = 6e-15
Identities = 19/96 (19%), Positives = 34/96 (35%), Gaps = 2/96 (2%)
Query: 410 PGPPAAPVILNTTRGSVTLGWGEPE-PRGGGVAPVIGYTVEYFSSDLQTGWVVAAHRITS 468
PP + ++ + W + P+ + YTV + +++ T+
Sbjct: 9 MMPPVGVQASILSHDTIRITWADNSLPKHQKITDSRYYTVRW-KTNIPANTKYKNANATT 67
Query: 469 TSITVSDLKPDTSYMFIVRAENSHGLGIPSPVSPIT 504
S V+ LKP+T Y F V S + T
Sbjct: 68 LSYLVTGLKPNTLYEFSVMVTKGRRSSTWSMTAHGT 103
Score = 31.3 bits (71), Expect = 0.30
Identities = 13/27 (48%), Positives = 14/27 (51%)
Query: 592 NMATVMNAATTTSYTVTHLRKFTKYEF 618
N ATT SY VT L+ T YEF
Sbjct: 57 NTKYKNANATTLSYLVTGLKPNTLYEF 83
>2k1m_A Myosin-binding protein C, cardiac-type; IG-I domain, cardiac
muscle, hypertrophic cardiomyopathy, actin-binding, cell
adhesion, disease mutation; NMR {Homo sapiens}
Length = 95
Score = 69.7 bits (171), Expect = 7e-15
Identities = 18/87 (20%), Positives = 33/87 (37%), Gaps = 9/87 (10%)
Query: 75 ISEPSDATVLSGSVVEFVCRVGGDPLPTILWRRDDGKM-PTGRAKILDD---RSLQIENV 130
+P V +GS F + W+R + + + + + +L + V
Sbjct: 12 SKKPRSVEVAAGSPAVFEAETERAG-VKVRWQRGGSDISASNKYGLATEGTRHTLTVREV 70
Query: 131 GPQDEGLYICDVENLVGSISLRASLTV 157
GP D+G Y + GS ++ L V
Sbjct: 71 GPADQGSYAV----IAGSSKVKFDLKV 93
Score = 51.2 bits (123), Expect = 2e-08
Identities = 20/79 (25%), Positives = 31/79 (39%), Gaps = 13/79 (16%)
Query: 259 RLSCFAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEG---TLRIQGVQKEDAGFFVC 315
E V W + GS + +A + EG TL ++ V D G +
Sbjct: 27 VFEAETER-AGVKVRWQRGGSDI-----SASNKYGLATEGTRHTLTVREVGPADQGSYAV 80
Query: 316 SALSVAGSTTVRAFLQVRE 334
+AGS+ V+ L+V E
Sbjct: 81 ----IAGSSKVKFDLKVIE 95
Score = 39.6 bits (93), Expect = 2e-04
Identities = 11/47 (23%), Positives = 21/47 (44%), Gaps = 4/47 (8%)
Query: 163 DFRAEPKDTRVASGETALLECGPPKGQPEPTLHWKKNGQFIDLESSK 209
F +P+ VA+G A+ E + + W++ G D+ +S
Sbjct: 10 AFSKKPRSVEVAAGSPAVFEAET--ERAGVKVRWQRGGS--DISASN 52
Score = 32.7 bits (75), Expect = 0.059
Identities = 7/30 (23%), Positives = 10/30 (33%), Gaps = 4/30 (13%)
Query: 363 DLRETDSGLYTCTASSESGETSWSASLSVE 392
++ D G Y A G + L V
Sbjct: 69 EVGPADQGSYAVIA----GSSKVKFDLKVI 94
>2dlt_A Myosin binding protein C, fast-type; IG-like domain, mybpc2,
structural genomics, NPPSFA; NMR {Mus musculus}
Length = 106
Score = 69.7 bits (171), Expect = 8e-15
Identities = 22/87 (25%), Positives = 38/87 (43%), Gaps = 7/87 (8%)
Query: 75 ISEPSDATVLSGSVVEFVCRVGGDPLPTILWRRDDGKM-PTGRAKILDD---RSLQIENV 130
+ + +D TV + F C V + T W ++ ++ P+ R I L I++V
Sbjct: 12 LQDIADLTVKAAEQAVFKCEVSDEK-VTGKWYKNGVEVRPSKRITISHVGRFHKLVIDDV 70
Query: 131 GPQDEGLYICDVENLVGSISLRASLTV 157
P+DEG Y + S+S + L
Sbjct: 71 RPEDEGDYTFVPDGYALSLSAK--LNF 95
Score = 43.5 bits (103), Expect = 1e-05
Identities = 17/79 (21%), Positives = 26/79 (32%), Gaps = 11/79 (13%)
Query: 259 RLSCFAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEG---TLRIQGVQKEDAGFFVC 315
C + W + G +V P + ++ G L I V+ ED G +
Sbjct: 27 VFKCEVSDEK-VTGKWYKNGVEV--RPS---KRITISHVGRFHKLVIDDVRPEDEGDYTF 80
Query: 316 SALSVAGSTTVRAFLQVRE 334
A S + A L E
Sbjct: 81 VPDGYALSLS--AKLNFLE 97
Score = 37.0 bits (86), Expect = 0.002
Identities = 10/38 (26%), Positives = 15/38 (39%), Gaps = 2/38 (5%)
Query: 164 FRAEPKDTRVASGETALLECGPPKGQPEPTLHWKKNGQ 201
+ D V + E A+ +C + T W KNG
Sbjct: 11 VLQDIADLTVKAAEQAVFKC--EVSDEKVTGKWYKNGV 46
Score = 34.3 bits (79), Expect = 0.019
Identities = 9/34 (26%), Positives = 12/34 (35%), Gaps = 2/34 (5%)
Query: 362 CDLRETDSGLYTCTASSESGETSWSASLSVEPRP 395
D+R D G YT + SA L+
Sbjct: 68 DDVRPEDEGDYTFVPDGYALSL--SAKLNFLEIK 99
>2yuz_A Myosin-binding protein C, SLOW-type; immunoglobulin domain,
SLOW-type myosin-binding protein C, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 100
Score = 68.9 bits (169), Expect = 1e-14
Identities = 18/87 (20%), Positives = 36/87 (41%), Gaps = 8/87 (9%)
Query: 75 ISEPSDATVLSGSVVEFVCRVGGDPLPTILWRRDDGK-MPTGRAKILDD---RSLQIENV 130
++ +D TV G + C + + W ++ + R K++ L I N
Sbjct: 11 LTPLTDQTVNLGKEICLKCEISENIPGK--WTKNGLPVQESDRLKVVQKGRIHKLVIANA 68
Query: 131 GPQDEGLYICDVENLVGSISLRASLTV 157
+DEG Y+ + +++L A + V
Sbjct: 69 LTEDEGDYVFAPDA--YNVTLPAKVHV 93
Score = 45.0 bits (107), Expect = 3e-06
Identities = 22/79 (27%), Positives = 29/79 (36%), Gaps = 12/79 (15%)
Query: 259 RLSCFAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEG---TLRIQGVQKEDAGFFVC 315
L C E S WT+ G V L V Q+G L I ED G +V
Sbjct: 26 CLKC--EISENIPGKWTKNGLPV-----QESDRLKVVQKGRIHKLVIANALTEDEGDYVF 78
Query: 316 SALSVAGSTTVRAFLQVRE 334
+ A + T+ A + V
Sbjct: 79 AP--DAYNVTLPAKVHVIS 95
Score = 36.5 bits (85), Expect = 0.003
Identities = 6/35 (17%), Positives = 11/35 (31%), Gaps = 2/35 (5%)
Query: 362 CDLRETDSGLYTCTASSESGETSWSASLSVEPRPG 396
+ D G Y ++ + A + V P
Sbjct: 66 ANALTEDEGDYVFAP--DAYNVTLPAKVHVISGPS 98
Score = 36.2 bits (84), Expect = 0.004
Identities = 9/38 (23%), Positives = 12/38 (31%), Gaps = 3/38 (7%)
Query: 164 FRAEPKDTRVASGETALLECGPPKGQPEPTLHWKKNGQ 201
D V G+ L+C + W KNG
Sbjct: 10 ILTPLTDQTVNLGKEICLKC---EISENIPGKWTKNGL 44
>1fnf_A Fibronectin; RGD, extracellular matrix, cell adhesion protein;
2.00A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 b.1.2.1
b.1.2.1 PDB: 1mfn_A 2mfn_A 2ck2_A
Length = 368
Score = 74.9 bits (184), Expect = 1e-14
Identities = 35/224 (15%), Positives = 64/224 (28%), Gaps = 58/224 (25%)
Query: 410 PGPPAAPVILNTTRGSVTLGWGEPEPRGGGVAPVIGYTVEYFSSDLQTGWVVAAHRITST 469
P + T S T+ W P A + GY + + +
Sbjct: 186 LDSPTGIDFSDITANSFTVHWIAPR------ATITGYRIRHHPEHFSGRPREDRVPHSRN 239
Query: 470 SITVSDLKPDTSYMFIVRAENSHGLGIPSPVSPITRTLGLNSLVPQHLLDEARARLGTKV 529
SIT+++L P T Y+ + A N T S VP+ L +V
Sbjct: 240 SITLTNLTPGTEYVVSIVALNGREESPLLIGQQSTV-----SDVPRDL----------EV 284
Query: 530 VNLRELIPTASTAVRITWEVSWGSVPQHLLDEARARLGTKVVNLRELIPTASTAVRITWE 589
V T++ I+W+ +V RIT+
Sbjct: 285 VAAT------PTSLLISWDAPAVTV---------------------------RYYRITYG 311
Query: 590 KYN----MATVMNAATTTSYTVTHLRKFTKYEFFLVPFFKTVEG 629
+ + + ++ T++ L+ Y + +
Sbjct: 312 ETGGNSPVQEFTVPGSKSTATISGLKPGVDYTITVYAVTGRGDS 355
Score = 74.1 bits (182), Expect = 2e-14
Identities = 24/220 (10%), Positives = 55/220 (25%), Gaps = 49/220 (22%)
Query: 410 PGPPAAPVILNTTRGSVTLGWGEPEPRGGGVAPVIGYTVEYFSSDLQTGWVVAAHRITST 469
PP N ++ + W P + + V Y + + +
Sbjct: 95 VPPPTDLRFTNIGPDTMRVTWAPPPS-----IDLTNFLVRYSPVKNEEDVAELSISPSDN 149
Query: 470 SITVSDLKPDTSYMFIVRAENSHGLGIPSPVSPITRTLGLNSLVPQHLLDEARARLGTKV 529
++ +++L P T Y+ V + P T P +
Sbjct: 150 AVVLTNLLPGTEYVVSVSSVYEQHESTPLRGRQKTG-----LDSPTGI------------ 192
Query: 530 VNLRELIPTASTAVRITWEVSWGSVPQHLLDEARARLGTKVVNLRELIPTASTAVRITWE 589
+ + + + W ++ + +
Sbjct: 193 ----DFSDITANSFTVHWIAPRATITGYRI-------------------RHHPEHFSGRP 229
Query: 590 KYNMATVMNAATTTSYTVTHLRKFTKYEFFLVPFFKTVEG 629
+ + + S T+T+L T+Y +V E
Sbjct: 230 REDRVP----HSRNSITLTNLTPGTEYVVSIVALNGREES 265
Score = 72.9 bits (179), Expect = 5e-14
Identities = 22/99 (22%), Positives = 34/99 (34%), Gaps = 8/99 (8%)
Query: 410 PGPPAAPVILNTTRGSVTLGWGEPEPRGGGVAPVIGYTVEYFSSDLQTGWVVAAHRITST 469
P ++ T S+ + W P V Y + Y + + + +
Sbjct: 276 SDVPRDLEVVAATPTSLLISWDAPA------VTVRYYRITYGETGGNSPVQEFTVPGSKS 329
Query: 470 SITVSDLKPDTSYMFIVRAENSHGLGIPS--PVSPITRT 506
+ T+S LKP Y V A G S P+S RT
Sbjct: 330 TATISGLKPGVDYTITVYAVTGRGDSPASSKPISINYRT 368
Score = 69.1 bits (169), Expect = 9e-13
Identities = 32/225 (14%), Positives = 63/225 (28%), Gaps = 55/225 (24%)
Query: 412 PPAAP----VILNTTRGSVTLGWGEPEPRGGGVAPVIGYTVEYFSSDLQTGWVVAAH-RI 466
P + P + N G +T+ W + GY + ++ Q G +
Sbjct: 1 PLSPPTNLHLEANPDTGVLTVSWERSTT-----PDITGYRITTTPTNGQQGNSLEEVVHA 55
Query: 467 TSTSITVSDLKPDTSYMFIVRAENSHGLGIPSPVSPITRTLGLNSLVPQHLLDEARARLG 526
+S T +L P Y V +P + I VP
Sbjct: 56 DQSSCTFDNLSPGLEYNVSVYTVKDDKESVPISDTIIPA-------VPP----------- 97
Query: 527 TKVVNLRELIPTASTAVRITWE-VSWGSVPQHLLDEARARLGTKVVNLRELIPTASTAVR 585
+LR +R+TW + L+
Sbjct: 98 --PTDLR-FTNIGPDTMRVTWAPPPSIDLTNFLVR-----------------------YS 131
Query: 586 ITWEKYNMATVMNAATTTSYTVTHLRKFTKYEFFLVPFFKTVEGA 630
+ ++A + + + + +T+L T+Y + ++ E
Sbjct: 132 PVKNEEDVAELSISPSDNAVVLTNLLPGTEYVVSVSSVYEQHEST 176
>3t04_D Monobody 7C12; engineered binding protein, antibody mimic,
protein-protein SH2 domain, ATP-binding, phosphoprotein;
2.10A {Homo sapiens}
Length = 103
Score = 69.0 bits (169), Expect = 1e-14
Identities = 20/99 (20%), Positives = 34/99 (34%), Gaps = 5/99 (5%)
Query: 410 PGPPAAPVILNTTRGSVTLGWGEPEPRGGGVAPVIGYTVEYFSSDLQTGWVVAAHRITST 469
P +++ T S+ + W V Y + Y + + +
Sbjct: 8 SSVPTKLEVVDATPTSLKISWDAYYSSWQ---NVKYYRITYGETGGDSPVQEFTVPGYYS 64
Query: 470 SITVSDLKPDTSYMFIVRAENSHGLGIPS--PVSPITRT 506
+ T+S LKP Y V A ++ G P+S RT
Sbjct: 65 TATISGLKPGVDYTITVYAYDTFFPGYEPNSPISINYRT 103
Score = 27.4 bits (61), Expect = 5.4
Identities = 8/68 (11%), Positives = 21/68 (30%), Gaps = 22/68 (32%)
Query: 572 NLRELIPTASTAVRITWE----------KY-----------NMATVMNAATTTSYTVTHL 610
L ++ T+++I+W+ Y + ++ T++ L
Sbjct: 13 KLE-VVDATPTSLKISWDAYYSSWQNVKYYRITYGETGGDSPVQEFTVPGYYSTATISGL 71
Query: 611 RKFTKYEF 618
+ Y
Sbjct: 72 KPGVDYTI 79
>2eny_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 104
Score = 69.0 bits (169), Expect = 1e-14
Identities = 17/89 (19%), Positives = 24/89 (26%), Gaps = 9/89 (10%)
Query: 75 ISEPSDATVLSGSVVEFVCRV-GGDPLPTILWRRDDGKM-PTGRAKILDD---RSLQIEN 129
VL G F C + +W + + R + L +
Sbjct: 12 TKRLKTMEVLEGESCSFECVLSHESASDPAMWTVGGKTVGSSSRFQATRQGRKYILVVRE 71
Query: 130 VGPQDEGLYICDVENLVGSISLRASLTVH 158
P D G + V L ASL V
Sbjct: 72 AAPSDAGEVVFSVRGLTSK----ASLIVR 96
Score = 51.6 bits (124), Expect = 2e-08
Identities = 19/80 (23%), Positives = 26/80 (32%), Gaps = 13/80 (16%)
Query: 259 RLSC-FAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEG---TLRIQGVQKEDAGFFV 314
C + S WT G V + T++G L ++ DAG V
Sbjct: 27 SFECVLSHESASDPAMWTVGGKTV-----GSSSRFQATRQGRKYILVVREAAPSDAGEVV 81
Query: 315 CSALSVAGSTTVRAFLQVRE 334
T +A L VRE
Sbjct: 82 F----SVRGLTSKASLIVRE 97
Score = 46.2 bits (110), Expect = 1e-06
Identities = 8/40 (20%), Positives = 11/40 (27%)
Query: 164 FRAEPKDTRVASGETALLECGPPKGQPEPTLHWKKNGQFI 203
K V GE+ EC W G+ +
Sbjct: 11 ITKRLKTMEVLEGESCSFECVLSHESASDPAMWTVGGKTV 50
Score = 39.7 bits (93), Expect = 2e-04
Identities = 9/35 (25%), Positives = 14/35 (40%), Gaps = 4/35 (11%)
Query: 363 DLRETDSGLYTCTASSESGETSWSASLSVEPRPGP 397
+ +D+G + + ASL V R GP
Sbjct: 71 EAAPSDAGEVVFSV----RGLTSKASLIVRERSGP 101
>3t1w_A Four-domain fibronectin fragment; human fibronectin, FN type-III
domain, oncofetal splice VARI extra-domain B, EIIIB,
ED-B, angiogenesis, integrin; 2.40A {Homo sapiens}
Length = 375
Score = 74.5 bits (183), Expect = 2e-14
Identities = 35/228 (15%), Positives = 60/228 (26%), Gaps = 61/228 (26%)
Query: 412 PPAAP----VILNTTRGSVTLGWGEPEPRGGGVAPVIGYTVEYFSSDLQTGWVVAAH-RI 466
P + P + N G +T+ W + GY + ++ Q G +
Sbjct: 2 PLSPPTNLHLEANPDTGVLTVSWERSTT-----PDITGYRITTTPTNGQQGNSLEEVVHA 56
Query: 467 TSTSITVSDLKPDTSYMFIVRAENSHGLGIPSPVSPITRTLGLNSLVPQHLLDEARARLG 526
+S T +L P Y V P+S VPQ
Sbjct: 57 DQSSCTFDNLSPGLEYNVSVYTVKDDKES--VPISDTIIP-----EVPQ----------- 98
Query: 527 TKVVNLRELIPTASTAVRITWEVSWGSVPQHLLDEARARLGTKVVNLRELIPTASTAVRI 586
+ +L + +++ + W S RI
Sbjct: 99 --LTDLS-FVDITDSSIGLRWTPLNSSTIIG--------------------------YRI 129
Query: 587 TWEKYN----MATVMNAATTTSYTVTHLRKFTKYEFFLVPFFKTVEGA 630
T + ++ YTVT L Y+ ++ E A
Sbjct: 130 TVVAAGEGIPIFEDFVDSSVGYYTVTGLEPGIDYDISVITLINGGESA 177
Score = 74.5 bits (183), Expect = 2e-14
Identities = 29/225 (12%), Positives = 61/225 (27%), Gaps = 56/225 (24%)
Query: 410 PGPPAAPVILNTTRGSVTLGWGEPEPRGGGVAPVIGYTVEYFSSDLQTGWVVAAHRITST 469
++ T S+ L W + +IGY + ++ +
Sbjct: 96 VPQLTDLSFVDITDSSIGLRWTPLNS-----STIIGYRITVVAAGEGIPIFEDFVDSSVG 150
Query: 470 SITVSDLKPDTSYMFIVRAENSHGLGIPSPVSPITRTLGLNSLVPQHLLDEARARLGTKV 529
TV+ L+P Y V + G P+ ++ T P L
Sbjct: 151 YYTVTGLEPGIDYDISVITLINGGESAPTTLTQQTAVPP-----PTDL------------ 193
Query: 530 VNLRELIPTASTAVRITWEVSWGSVPQHLLDEARARLGTKVVNLRELIPTASTAVRITWE 589
+R+TW + P T + +
Sbjct: 194 ----RFTNIGPDTMRVTW-----APPPS---------------------IDLTNFLVRYS 223
Query: 590 KY----NMATVMNAATTTSYTVTHLRKFTKYEFFLVPFFKTVEGA 630
++A + + + + +T+L T+Y + ++ E
Sbjct: 224 PVKNEEDVAELSISPSDNAVVLTNLLPGTEYVVSVSSVYEQHEST 268
Score = 70.6 bits (173), Expect = 3e-13
Identities = 20/107 (18%), Positives = 34/107 (31%), Gaps = 10/107 (9%)
Query: 410 PGPPAAPVILNTTRGSVTLGWGEPEPRGGGVAPVIGYTVEYFSSDLQTGWVVAAHRITST 469
P + T S T+ W P A + GY + + +
Sbjct: 278 LDSPTGIDFSDITANSFTVHWIAPR------ATITGYRIRHHPEHFSGRPREDRVPHSRN 331
Query: 470 SITVSDLKPDTSYMFIVRAENSHGLGIPSPVSPITRTLGLNSLVPQH 516
SIT+++L P T Y+ + A N T +++ H
Sbjct: 332 SITLTNLTPGTEYVVSIVALNGREESPLLIGQQST----VSAHHHHH 374
Score = 70.6 bits (173), Expect = 4e-13
Identities = 26/220 (11%), Positives = 54/220 (24%), Gaps = 49/220 (22%)
Query: 410 PGPPAAPVILNTTRGSVTLGWGEPEPRGGGVAPVIGYTVEYFSSDLQTGWVVAAHRITST 469
PP N ++ + W P + + V Y + + +
Sbjct: 187 VPPPTDLRFTNIGPDTMRVTWAPPPS-----IDLTNFLVRYSPVKNEEDVAELSISPSDN 241
Query: 470 SITVSDLKPDTSYMFIVRAENSHGLGIPSPVSPITRTLGLNSLVPQHLLDEARARLGTKV 529
++ +++L P T Y+ V + P T P +
Sbjct: 242 AVVLTNLLPGTEYVVSVSSVYEQHESTPLRGRQKTG-----LDSPTGI------------ 284
Query: 530 VNLRELIPTASTAVRITWEVSWGSVPQHLLDEARARLGTKVVNLRELIPTASTAVRITWE 589
+ + + + W RA + + +
Sbjct: 285 ----DFSDITANSFTVHWI------------APRATITGYRIRHHPEHFSGRPREDRV-- 326
Query: 590 KYNMATVMNAATTTSYTVTHLRKFTKYEFFLVPFFKTVEG 629
+ S T+T+L T+Y +V E
Sbjct: 327 ---------PHSRNSITLTNLTPGTEYVVSIVALNGREES 357
>2dm7_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} PDB: 2edl_A
2edw_A 2gqh_A 2edt_A 2edq_A 2edr_A
Length = 108
Score = 68.6 bits (168), Expect = 3e-14
Identities = 20/101 (19%), Positives = 32/101 (31%), Gaps = 10/101 (9%)
Query: 75 ISEPSDATVLSGSVVEFVCRVGGDPLPTILWRRDDGK-MPTGRAKILDD---RSLQIENV 130
+ G+ C + + + W++ GR + D LQI ++
Sbjct: 12 TQDLKTKEASEGATATLQCEL--SKVAPVEWKKGPETLRDGGRYSLKQDGTRCELQIHDL 69
Query: 131 GPQDEGLYICDVENLVGSISLRASLTVHLLRDDFRAEPKDT 171
D G Y C G A+LTV L F +
Sbjct: 70 SVADAGEYSCM----CGQERTSATLTVRALPARFTEGSGPS 106
Score = 47.0 bits (112), Expect = 9e-07
Identities = 20/79 (25%), Positives = 29/79 (36%), Gaps = 14/79 (17%)
Query: 259 RLSCFAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEG---TLRIQGVQKEDAGFFVC 315
L C E S + V W + + G + Q+G L+I + DAG + C
Sbjct: 27 TLQC--ELSKVAPVEWKKGPETL-----RDGGRYSLKQDGTRCELQIHDLSVADAGEYSC 79
Query: 316 SALSVAGSTTVRAFLQVRE 334
+ G A L VR
Sbjct: 80 ----MCGQERTSATLTVRA 94
Score = 39.3 bits (92), Expect = 4e-04
Identities = 10/39 (25%), Positives = 16/39 (41%), Gaps = 3/39 (7%)
Query: 163 DFRAEPKDTRVASGETALLECGPPKGQPEPTLHWKKNGQ 201
F + K + G TA L+C + + WKK +
Sbjct: 10 RFTQDLKTKEASEGATATLQC---ELSKVAPVEWKKGPE 45
Score = 37.0 bits (86), Expect = 0.003
Identities = 15/45 (33%), Positives = 20/45 (44%), Gaps = 4/45 (8%)
Query: 363 DLRETDSGLYTCTASSESGETSWSASLSVEPRPGPHAVHRMPDSG 407
DL D+G Y+C G+ SA+L+V P P SG
Sbjct: 68 DLSVADAGEYSCMC----GQERTSATLTVRALPARFTEGSGPSSG 108
>2edf_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 103
Score = 68.1 bits (167), Expect = 3e-14
Identities = 22/87 (25%), Positives = 33/87 (37%), Gaps = 9/87 (10%)
Query: 75 ISEPSDATVLSGSVVEFVCRVGGDPLPTILWRRDDGK-MPTGRAKILDD---RSLQIENV 130
I D V G VE C + P + W +D + + ++ + L I
Sbjct: 12 IKPLEDQWVAPGEDVELRCELSRAGTP-VHWLKDRKAIRKSQKYDVVCEGTMAMLVIRGA 70
Query: 131 GPQDEGLYICDVENLVGSISLRASLTV 157
+D G Y C+VE + ASL V
Sbjct: 71 SLKDAGEYTCEVEASKST----ASLHV 93
Score = 45.0 bits (107), Expect = 3e-06
Identities = 20/79 (25%), Positives = 29/79 (36%), Gaps = 13/79 (16%)
Query: 259 RLSCFAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEG---TLRIQGVQKEDAGFFVC 315
L C + P V W ++ + Y V EG L I+G +DAG + C
Sbjct: 27 ELRCELSRAGTP-VHWLKDRKAI--RKSQKY---DVVCEGTMAMLVIRGASLKDAGEYTC 80
Query: 316 SALSVAGSTTVRAFLQVRE 334
+ + A L V E
Sbjct: 81 EVEASKST----ASLHVEE 95
Score = 37.7 bits (88), Expect = 0.002
Identities = 13/45 (28%), Positives = 17/45 (37%), Gaps = 10/45 (22%)
Query: 363 DLRETDSGLYTCTASSESGETSWSASLSVEPRPGPHAVHRMPDSG 407
D+G YTC + +ASL VE + P SG
Sbjct: 69 GASLKDAGEYTCEVEASKS----TASLHVEEKASG------PSSG 103
Score = 33.8 bits (78), Expect = 0.031
Identities = 10/41 (24%), Positives = 14/41 (34%), Gaps = 8/41 (19%)
Query: 164 FRAEPKDTRVASGETALLEC---GPPKGQPEPTLHWKKNGQ 201
+D VA GE L C +HW K+ +
Sbjct: 11 IIKPLEDQWVAPGEDVELRCELSRAG-----TPVHWLKDRK 46
>3s35_X Vascular endothelial growth factor receptor 2; antibody, KDR, VEGF
receptor, cancer, immune system-transfer complex; HET:
NAG; 2.20A {Homo sapiens} PDB: 3s36_X 3s37_X
Length = 122
Score = 68.2 bits (166), Expect = 5e-14
Identities = 18/103 (17%), Positives = 32/103 (31%), Gaps = 14/103 (13%)
Query: 70 IKPFPISEPSDATVLSGSVVEFVCRVGGDPLPTILWRRD--------------DGKMPTG 115
I +S + G + C + I + + D K +G
Sbjct: 7 IYDVVLSPSHGIELSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSG 66
Query: 116 RAKILDDRSLQIENVGPQDEGLYICDVENLVGSISLRASLTVH 158
+L I+ V D+GLY C + + + + VH
Sbjct: 67 SEMKKFLSTLTIDGVTRSDQGLYTCAASSGLMTKKNSTFVRVH 109
Score = 53.2 bits (127), Expect = 8e-09
Identities = 19/84 (22%), Positives = 28/84 (33%), Gaps = 8/84 (9%)
Query: 259 RLSCFAEGSPLPSVFWT--------QEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDA 310
L+C A + + Q V G TL I GV + D
Sbjct: 27 VLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLSTLTIDGVTRSDQ 86
Query: 311 GFFVCSALSVAGSTTVRAFLQVRE 334
G + C+A S + F++V E
Sbjct: 87 GLYTCAASSGLMTKKNSTFVRVHE 110
Score = 39.3 bits (91), Expect = 6e-04
Identities = 12/33 (36%), Positives = 16/33 (48%)
Query: 363 DLRETDSGLYTCTASSESGETSWSASLSVEPRP 395
+ +D GLYTC ASS S + V +P
Sbjct: 80 GVTRSDQGLYTCAASSGLMTKKNSTFVRVHEKP 112
Score = 31.2 bits (70), Expect = 0.36
Identities = 7/53 (13%), Positives = 16/53 (30%), Gaps = 5/53 (9%)
Query: 168 PKDTRVASGETALLEC---GPPKGQPEPTLHWKKNGQFIDLESSKSLDLSRRT 217
++ GE +L C +W+ + + DL ++
Sbjct: 15 SHGIELSVGEKLVLNCTARTEL--NVGIDFNWEYPSSKHQHKKLVNRDLKTQS 65
>1hng_A CD2; T lymphocyte adhesion glycoprotein; 2.80A {Rattus rattus}
SCOP: b.1.1.1 b.1.1.3
Length = 176
Score = 69.2 bits (169), Expect = 7e-14
Identities = 26/155 (16%), Positives = 49/155 (31%), Gaps = 18/155 (11%)
Query: 77 EPSDATVLSGSVVEFVCRV--GGDPLPTILWRRDDGK-----------MPTGRAKILDDR 123
+ G + D + + W R + +G +IL +
Sbjct: 2 DSGTVWGALGHGINLNIPNFQMTDDIDEVRWERGSTLVAEFKRKMKPFLKSGAFEILANG 61
Query: 124 SLQIENVGPQDEGLYICDVENLVGSISLRASLTVHLLRDDFRAEPKDTRVASGETALLEC 183
L+I+N+ D G Y V + G+ L +L + +L K A L C
Sbjct: 62 DLKIKNLTRDDSGTYNVTVYSTNGTRILNKALDLRILEMV----SKPMIYWECSNATLTC 117
Query: 184 GPPKGQPEPTLHWKKNGQFIDLESSKSLDLSRRTL 218
+G + L + + + K++ L
Sbjct: 118 EVLEG-TDVELKLYQGKEHLRSLRQKTMSYQWTNL 151
Score = 65.8 bits (160), Expect = 9e-13
Identities = 22/162 (13%), Positives = 49/162 (30%), Gaps = 33/162 (20%)
Query: 259 RLSCFAEGSPLPSVFWTQEGSQVLMFPGNAY-----GHLHVTQEGTLRIQGVQKEDAGFF 313
+ F + V W + + V F G + G L+I+ + ++D+G +
Sbjct: 17 NIPNFQMTDDIDEVRWERGSTLVAEFKRKMKPFLKSGAFEILANGDLKIKNLTRDDSGTY 76
Query: 314 VCSALSVAGSTTVRAFLQVREFCVLPK-------GTFTL-----------------GQPN 349
+ S G+ + L +R ++ K TL +
Sbjct: 77 NVTVYSTNGTRILNKALDLRILEMVSKPMIYWECSNATLTCEVLEGTDVELKLYQGKEHL 136
Query: 350 LATGNSDLRRIACDLRETDSGLYTCTASSESGETSWSASLSV 391
+ + +L + C A + + S ++
Sbjct: 137 RSLRQKTMSYQWTNL----RAPFKCKAVNRVSQESEMEVVNC 174
Score = 43.8 bits (103), Expect = 4e-05
Identities = 11/89 (12%), Positives = 20/89 (22%), Gaps = 9/89 (10%)
Query: 69 LIKPFPISEPSDATVLSGSVVEFVCRVGGDPLPTILWRRDDGKMPTGRAKILDDRSLQIE 128
L +S+P S C V + + + + R +
Sbjct: 95 LRILEMVSKPM--IYWECSNATLTCEVLEGTDVELKLYQGKEHLRSLR-------QKTMS 145
Query: 129 NVGPQDEGLYICDVENLVGSISLRASLTV 157
+ C N V S +
Sbjct: 146 YQWTNLRAPFKCKAVNRVSQESEMEVVNC 174
Score = 34.9 bits (80), Expect = 0.033
Identities = 11/42 (26%), Positives = 16/42 (38%), Gaps = 3/42 (7%)
Query: 363 DLRETDSGLYTCTASSESGETSWSASLSV---EPRPGPHAVH 401
+L DSG Y T S +G + +L + E P
Sbjct: 67 NLTRDDSGTYNVTVYSTNGTRILNKALDLRILEMVSKPMIYW 108
>2edh_A Obscurin; structural genomics, NPPSFA, national project on P
structural and functional analyses, riken structural
genomics/proteomics initiative; NMR {Homo sapiens}
Length = 113
Score = 67.4 bits (165), Expect = 7e-14
Identities = 17/88 (19%), Positives = 28/88 (31%), Gaps = 10/88 (11%)
Query: 75 ISEPSDATVLSGSVVEFVCRVGGDPLPTILWRRDDGKM-PTGRAKILDD---RSLQIENV 130
+ G+ C + + W + + R + D LQI +
Sbjct: 23 TEGLRNEEATEGATAVLRCELSKMA--PVEWWKGHETLRDGDRHSLRQDGARCELQIRGL 80
Query: 131 GPQDEGLYICDVENLVGSISLRASLTVH 158
+D G Y+C + G A LTV
Sbjct: 81 VAEDAGEYLC----MCGKERTSAMLTVR 104
Score = 47.0 bits (112), Expect = 8e-07
Identities = 14/57 (24%), Positives = 21/57 (36%), Gaps = 3/57 (5%)
Query: 147 GSISLRASLTVHLLRDDFRAEPKDTRVASGETALLECGPPKGQPEPTLHWKKNGQFI 203
S A LTV L F ++ G TA+L C + + W K + +
Sbjct: 5 SSGRTSAMLTVRALPIKFTEGLRNEEATEGATAVLRC---ELSKMAPVEWWKGHETL 58
Score = 46.2 bits (110), Expect = 2e-06
Identities = 21/79 (26%), Positives = 32/79 (40%), Gaps = 14/79 (17%)
Query: 259 RLSCFAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEG---TLRIQGVQKEDAGFFVC 315
L C E S + V W + + + Q+G L+I+G+ EDAG ++C
Sbjct: 38 VLRC--ELSKMAPVEWWKGHETL-----RDGDRHSLRQDGARCELQIRGLVAEDAGEYLC 90
Query: 316 SALSVAGSTTVRAFLQVRE 334
+ G A L VR
Sbjct: 91 ----MCGKERTSAMLTVRA 105
Score = 38.1 bits (89), Expect = 0.001
Identities = 14/45 (31%), Positives = 17/45 (37%), Gaps = 10/45 (22%)
Query: 363 DLRETDSGLYTCTASSESGETSWSASLSVEPRPGPHAVHRMPDSG 407
L D+G Y C G+ SA L+V P P SG
Sbjct: 79 GLVAEDAGEYLCMC----GKERTSAMLTVRAMPSG------PSSG 113
>1n26_A IL-6 receptor alpha chain; transmembrane, glycoprotein,
immunoglobulin domain, cytokine; HET: NAG BMA MAN NDG;
2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.2.1 b.1.2.1 PDB:
1p9m_C 2arw_A
Length = 325
Score = 71.8 bits (175), Expect = 8e-14
Identities = 51/343 (14%), Positives = 98/343 (28%), Gaps = 66/343 (19%)
Query: 164 FRAEPKDTRVASGETALLECGPPKGQPEPTLHWKKNGQFIDLESSKSLDLSRRTLGWLRV 223
G++ L C + + T+HW S+ + RR L +
Sbjct: 9 QEVARGVLTSLPGDSVTLTCPGVEPEDNATVHWVLRKPAAGSHPSRWAGMGRR----LLL 64
Query: 224 RPLYWNVARPRANLNPRYIGRKMASLLIWNHPRVNRLSCFAEGSPLPSVFWTQEGSQVLM 283
R + SC+ G P +V
Sbjct: 65 RSV--------------------------QLHDSGNYSCYRAGRPAGTV----------- 87
Query: 284 FPGNAYGHLHVTQE-GTLRIQGVQKEDAGFFVCSALSVA-GSTTVRAFLQVREFCVLPKG 341
HL V ++ +K VC + S T +A L VR+F P
Sbjct: 88 -------HLLVDVPPEEPQLSCFRKSPLSNVVCEWGPRSTPSLTTKAVLLVRKFQNSPAE 140
Query: 342 TFTLGQPNLATGNSDLRRIACDLRETDSGLYTCTASSESGETSWSASLSVEPRPGPHAVH 401
F ++A ++ + + +S G + +S + + +
Sbjct: 141 DFQEPCQYSQESQKFSCQLAVPEGDSSFYIVSMCVASSVG-SKFSKTQTFQGCGILQ--- 196
Query: 402 RMPDSGLFPGPPAAPVI--LNTTRGSVTLGWGEPEPRGGGVAPVIGYTVEYFSSDLQTGW 459
P PPA + + +++ W +P + + + Y + +T +
Sbjct: 197 --------PDPPANITVTAVARNPRWLSVTWQDPHSWNSS-FYRLRFELRYRAERSKT-F 246
Query: 460 VVAAHRITSTSITVSDLKPDTSYMFIVRAENSHGLGIPSPVSP 502
+ + D ++ +RA+ G G S SP
Sbjct: 247 TTWMVKDLQHHCVIHDAWSGLRHVVQLRAQEEFGQGEWSEWSP 289
Score = 56.0 bits (134), Expect = 1e-08
Identities = 25/115 (21%), Positives = 36/115 (31%), Gaps = 9/115 (7%)
Query: 71 KPFPISEPSDATVLSGSVVEFVCR-VGGDPLPTILWRRDDGKMPTGRAKIL-DDRSLQIE 128
P T L G V C V + T+ W + ++ R L +
Sbjct: 6 CPAQEVARGVLTSLPGDSVTLTCPGVEPEDNATVHWVLRKPAAGSHPSRWAGMGRRLLLR 65
Query: 129 NVGPQDEGLYICDVENLVGSISLRASLTVHLLRDDFRAEPKDTRVASGETALLEC 183
+V D G Y C TVHLL D EP+ + + + C
Sbjct: 66 SVQLHDSGNYSCYRAGRPAG-------TVHLLVDVPPEEPQLSCFRKSPLSNVVC 113
Score = 54.5 bits (130), Expect = 4e-08
Identities = 33/264 (12%), Positives = 62/264 (23%), Gaps = 66/264 (25%)
Query: 363 DLRETDSGLYTCTASSESGETSWSASLSVEPRPGPHAVHRMPDSGLFPGPPAAPVILNTT 422
++ DSG Y+C + G + + L V+ P + +
Sbjct: 66 SVQLHDSGNYSCYRA---GRPAGTVHLLVDVPPEEPQLSC---------------FRKSP 107
Query: 423 RGSVTLGWGEPEPRGGGVAPVIGYTVEYF---SSDLQTGWVVAAHRITSTSITVS---DL 476
+V WG + +S + + S +
Sbjct: 108 LSNVVCEWGPRSTPS----LTTKAVLLVRKFQNSPAEDFQEPCQYSQESQKFSCQLAVPE 163
Query: 477 KPDTSYMFIVRAENSHGLGIPSPVSPITRTLGLNSLVPQHLLDEARARLGTKVVNLRELI 536
+ Y+ + +S G S L P ++ A +
Sbjct: 164 GDSSFYIVSMCVASSVG-SKFSKTQTFQGCGILQPDPPANITVTA--------------V 208
Query: 537 PTASTAVRITWE--VSWGSVPQHLLDEARARLGTKVVNLRELIPTASTAVRITWEKYNMA 594
+ +TW+ SW S L E R R T+
Sbjct: 209 ARNPRWLSVTWQDPHSWNSSFYRLRFELRYRAERSK----------------TFT----- 247
Query: 595 TVMNAATTTSYTVTHLRKFTKYEF 618
T M + ++
Sbjct: 248 TWMVKDLQHHCVIHDAWSGLRHVV 271
>3f7q_A Integrin beta-4, GP150; hemidesmosome, cell adhesion, carcinoma,
epidermolysis bullosa, alternative splicing, disease
mutation, glycoprotein; HET: 1PE PG4; 1.75A {Homo
sapiens} PDB: 3f7r_A 3f7p_C 1qg3_A
Length = 234
Score = 70.2 bits (172), Expect = 9e-14
Identities = 19/102 (18%), Positives = 30/102 (29%), Gaps = 8/102 (7%)
Query: 410 PGPPAAPVILNTTRGSVTLGWGEPEPRGGGVAPVIGYTVEYF-----SSDLQTGWVVAAH 464
P P + L W EP G + Y V Y + + V
Sbjct: 99 PSEPGRLAFNVVSSTVTQLSWAEPAETNG---EITAYEVCYGLVNDDNRPIGPMKKVLVD 155
Query: 465 RITSTSITVSDLKPDTSYMFIVRAENSHGLGIPSPVSPITRT 506
+ + + +L+ Y + V+A N G G T
Sbjct: 156 NPKNRMLLIENLRESQPYRYTVKARNGAGWGPEREAIINLAT 197
Score = 64.8 bits (158), Expect = 6e-12
Identities = 31/211 (14%), Positives = 62/211 (29%), Gaps = 43/211 (20%)
Query: 410 PGPPAAPVILNTTRGSVTLGWGEPEPRGGGVAPVIGYTVEYFSSDLQTGWVVAAHRITST 469
G P P + W P P G +GY V+Y+ +
Sbjct: 6 LGAPQNPNAKAAGSRKIHFNW-LP-PSG----KPMGYRVKYWIQG-DSESEAHLLDSKVP 58
Query: 470 SITVSDLKPDTSYMFIVRAENSHGLGIPSPVSPITRTLGLNSLVPQHLLDEARARLGTKV 529
S+ +++L P Y V A + G G S + RT VP +
Sbjct: 59 SVELTNLYPYCDYEMKVCAYGAQGEGPYSSLV-SCRTH---QEVPS------------EP 102
Query: 530 VNLRELIPTASTAVRITWEVSWGSVPQHLLDEARARLGTKVV--NLRELIPTASTAVRIT 587
L + +++ ++SW + ++ + +
Sbjct: 103 GRLAFNVVSSTVT-----QLSWAEPAET---------NGEITAYEVCYGLVNDDNRPIGP 148
Query: 588 WEKYNMATVMNAATTTSYTVTHLRKFTKYEF 618
+K +++ + +LR+ Y +
Sbjct: 149 MKK----VLVDNPKNRMLLIENLRESQPYRY 175
>1waa_A Titin; metal binding protein, calmodulin-binding, cytoskeleton,
immunoglobulin domain, muscle protein, phosphorylation,
repeat; 1.80A {Homo sapiens} PDB: 1waa_E 1waa_F 1tit_A
1tiu_A 2rq8_A
Length = 93
Score = 65.4 bits (160), Expect = 2e-13
Identities = 14/87 (16%), Positives = 25/87 (28%), Gaps = 9/87 (10%)
Query: 75 ISEPSDATVLSGSVVEFVCRVGGDPLPTILWRRDDGKM-PTGRAKILDD---RSLQIENV 130
V G F + +P W+ + + +I++D L + N
Sbjct: 9 EKPLYGVEVFVGETAHFEIELS-EPDVHGQWKLKGQPLAASPDCEIIEDGKKHILILHNC 67
Query: 131 GPQDEGLYICDVENLVGSISLRASLTV 157
G N + A+L V
Sbjct: 68 QLGMTGEVSFQAANTKSA----ANLKV 90
Score = 46.9 bits (112), Expect = 5e-07
Identities = 14/79 (17%), Positives = 23/79 (29%), Gaps = 13/79 (16%)
Query: 259 RLSCFAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEG---TLRIQGVQKEDAGFFVC 315
P W +G + A + ++G L + Q G
Sbjct: 24 HFEIEL-SEPDVHGQWKLKGQPL-----AASPDCEIIEDGKKHILILHNCQLGMTGEVSF 77
Query: 316 SALSVAGSTTVRAFLQVRE 334
A +T A L+V+E
Sbjct: 78 ----QAANTKSAANLKVKE 92
Score = 40.4 bits (95), Expect = 1e-04
Identities = 11/38 (28%), Positives = 13/38 (34%), Gaps = 2/38 (5%)
Query: 164 FRAEPKDTRVASGETALLECGPPKGQPEPTLHWKKNGQ 201
V GETA E +P+ WK GQ
Sbjct: 8 VEKPLYGVEVFVGETAHFEIEL--SEPDVHGQWKLKGQ 43
Score = 32.7 bits (75), Expect = 0.068
Identities = 6/30 (20%), Positives = 13/30 (43%), Gaps = 4/30 (13%)
Query: 363 DLRETDSGLYTCTASSESGETSWSASLSVE 392
+ + +G + A T +A+L V+
Sbjct: 66 NCQLGMTGEVSFQA----ANTKSAANLKVK 91
>2eo1_A OBSCN protein, cDNA FLJ14124 FIS, clone mamma1002498;
beta-sandwich, IG-fold, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 102
Score = 65.9 bits (161), Expect = 2e-13
Identities = 15/94 (15%), Positives = 31/94 (32%), Gaps = 9/94 (9%)
Query: 68 ALIKPFPISEPSDATVLSGSVVEFVCRVGGDPLPTILWRRDDGKM-PTGRAKILDD---R 123
++ + +G+ C V + W +D K+ + + ++ R
Sbjct: 8 KVVFAKEQPAHREVQAEAGASATLSCEVAQ-AQTEVTWYKDGKKLSSSSKVRVEAVGCTR 66
Query: 124 SLQIENVGPQDEGLYICDVENLVGSISLRASLTV 157
L ++ G + G Y C+ S L V
Sbjct: 67 RLVVQQAGQAEAGEYSCEAGGQQLS----FRLQV 96
Score = 46.2 bits (110), Expect = 1e-06
Identities = 18/79 (22%), Positives = 30/79 (37%), Gaps = 13/79 (16%)
Query: 259 RLSCFAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEG---TLRIQGVQKEDAGFFVC 315
LSC V W ++G ++ ++ + V G L +Q + +AG + C
Sbjct: 30 TLSCEV-AQAQTEVTWYKDGKKL-----SSSSKVRVEAVGCTRRLVVQQAGQAEAGEYSC 83
Query: 316 SALSVAGSTTVRAFLQVRE 334
AG + LQV
Sbjct: 84 ----EAGGQQLSFRLQVAG 98
Score = 40.5 bits (95), Expect = 1e-04
Identities = 8/40 (20%), Positives = 19/40 (47%), Gaps = 2/40 (5%)
Query: 164 FRAEPKDTRVASGETALLECGPPKGQPEPTLHWKKNGQFI 203
+ ++ + +G +A L C Q + + W K+G+ +
Sbjct: 14 EQPAHREVQAEAGASATLSC--EVAQAQTEVTWYKDGKKL 51
Score = 33.9 bits (78), Expect = 0.025
Identities = 7/33 (21%), Positives = 13/33 (39%), Gaps = 4/33 (12%)
Query: 363 DLRETDSGLYTCTASSESGETSWSASLSVEPRP 395
+ ++G Y+C A + S L V +
Sbjct: 72 QAGQAEAGEYSCEAGGQQL----SFRLQVAGQC 100
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein,
neurite growth regulation; HET: NAG BMA; 2.00A {Mus
musculus}
Length = 361
Score = 71.4 bits (175), Expect = 2e-13
Identities = 12/85 (14%), Positives = 29/85 (34%), Gaps = 3/85 (3%)
Query: 77 EPSDATVLSGSVVEFVCRVGGDPLPTILWRRDDGKMPTG---RAKILDDRSLQIENVGPQ 133
+ S G + C + + + ++ + + + + L + V +
Sbjct: 252 KESAWEAHLGDTLTIRCDTKQQGMTKVWVSPSNEQVLSQGSNGSVSVRNGDLFFKKVQVE 311
Query: 134 DEGLYICDVENLVGSISLRASLTVH 158
D G+Y C + +L L V+
Sbjct: 312 DGGVYTCYAMGETFNETLSVELKVY 336
Score = 62.9 bits (153), Expect = 8e-11
Identities = 20/83 (24%), Positives = 35/83 (42%), Gaps = 3/83 (3%)
Query: 260 LSCFAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALS 319
+ C + + V+ + QVL + G + V + G L + VQ ED G + C A+
Sbjct: 266 IRCDTKQQGMTKVWVSPSNEQVL--SQGSNGSVSV-RNGDLFFKKVQVEDGGVYTCYAMG 322
Query: 320 VAGSTTVRAFLQVREFCVLPKGT 342
+ T+ L+V F +
Sbjct: 323 ETFNETLSVELKVYNFTLHGHHD 345
Score = 41.8 bits (98), Expect = 5e-04
Identities = 13/51 (25%), Positives = 20/51 (39%), Gaps = 1/51 (1%)
Query: 363 DLRETDSGLYTCTASSESGETSWSASLSVEPRPGPHAVHRMPDSGLFPGPP 413
++ D G+YTC A E+ + S L V H H ++ P
Sbjct: 307 KVQVEDGGVYTCYAMGETFNETLSVELKVYNFT-LHGHHDTLNAAADPWSH 356
>3teu_A Fibcon; FN3 domain, fibronectin TPYE III domain, consensus design,
S de novo protein; HET: DIO; 1.00A {Synthetic}
Length = 98
Score = 65.5 bits (160), Expect = 2e-13
Identities = 23/94 (24%), Positives = 36/94 (38%), Gaps = 6/94 (6%)
Query: 411 GPPAAPVILNTTRGSVTLGWGEPEPRGGGVAPVIGYTVEYFSSDLQTGWVVAAHRITSTS 470
P + N T S+T+ W P A + GY + Y S+ +STS
Sbjct: 3 DAPTDLQVTNVTDTSITVSWTPPS------ATITGYRITYTPSNGPGEPKELTVPPSSTS 56
Query: 471 ITVSDLKPDTSYMFIVRAENSHGLGIPSPVSPIT 504
+T++ L P Y+ V A + P + T
Sbjct: 57 VTITGLTPGVEYVVSVYALKDNQESPPLVGTQTT 90
Score = 27.0 bits (60), Expect = 6.0
Identities = 10/38 (26%), Positives = 16/38 (42%), Gaps = 4/38 (10%)
Query: 585 RITWEKYNMA----TVMNAATTTSYTVTHLRKFTKYEF 618
RIT+ N + ++TS T+T L +Y
Sbjct: 33 RITYTPSNGPGEPKELTVPPSSTSVTITGLTPGVEYVV 70
>2ocf_D Fibronectin; estrogen receptor, LBD, monobody, estradiol,
hormone-growth complex; HET: CME EST; 2.95A {Homo
sapiens}
Length = 121
Score = 66.5 bits (162), Expect = 2e-13
Identities = 21/99 (21%), Positives = 34/99 (34%), Gaps = 8/99 (8%)
Query: 410 PGPPAAPVILNTTRGSVTLGWGEPEPRGGGVAPVIGYTVEYFSSDLQTGWVVAAHRITST 469
P ++ T S+ + W P V Y + Y + + + +
Sbjct: 29 SDVPTKLEVVAATPTSLLISWDAPA------VTVRYYRITYGETGGNSPVQEFTVPGSKS 82
Query: 470 SITVSDLKPDTSYMFIVRAENSHGLGIPS--PVSPITRT 506
+ T+S LKP Y V A L + P+S RT
Sbjct: 83 TATISGLKPGVDYTITVYAVTGLRLMLAGSKPISINYRT 121
Score = 27.2 bits (60), Expect = 9.0
Identities = 7/56 (12%), Positives = 18/56 (32%), Gaps = 18/56 (32%)
Query: 581 STAVRITWE-------KY-----------NMATVMNAATTTSYTVTHLRKFTKYEF 618
T++ I+W+ Y + + ++ T++ L+ Y
Sbjct: 42 PTSLLISWDAPAVTVRYYRITYGETGGNSPVQEFTVPGSKSTATISGLKPGVDYTI 97
>1x44_A Myosin-binding protein C, SLOW-type; IG-like domain, SLOW-
type/skeletal muscle SLOW-isoform, structural genomics,
NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4
Length = 103
Score = 65.4 bits (160), Expect = 2e-13
Identities = 22/91 (24%), Positives = 29/91 (31%), Gaps = 11/91 (12%)
Query: 75 ISEPSDATVLSGSVVEFVCRVGGDPLPTILWRRDD---GKMPTGRAKILDD---RSLQIE 128
+ D T G VE C V D + W ++ P R +I + L IE
Sbjct: 11 TKQLEDTTAYCGERVELECEVSEDD-ANVKWFKNGEEIIPGPKSRYRIRVEGKKHILIIE 69
Query: 129 NVGPQDEGLYICDVENLVGSISLRASLTVHL 159
D Y S A L+V L
Sbjct: 70 GATKADAAEYSVMTTGGQSS----AKLSVDL 96
Score = 44.6 bits (106), Expect = 5e-06
Identities = 18/79 (22%), Positives = 28/79 (35%), Gaps = 11/79 (13%)
Query: 259 RLSCFAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEG---TLRIQGVQKEDAGFFVC 315
L C +V W + G +++ P + Y + EG L I+G K DA +
Sbjct: 26 ELECEVSE-DDANVKWFKNGEEIIPGPKSRY---RIRVEGKKHILIIEGATKADAAEYSV 81
Query: 316 SALSVAGSTTVRAFLQVRE 334
+ A L V
Sbjct: 82 ----MTTGGQSSAKLSVDL 96
Score = 39.6 bits (93), Expect = 3e-04
Identities = 12/46 (26%), Positives = 18/46 (39%), Gaps = 2/46 (4%)
Query: 164 FRAEPKDTRVASGETALLECGPPKGQPEPTLHWKKNGQFIDLESSK 209
+ +DT GE LEC + + + W KNG+ I
Sbjct: 10 VTKQLEDTTAYCGERVELECEV--SEDDANVKWFKNGEEIIPGPKS 53
Score = 36.2 bits (84), Expect = 0.005
Identities = 9/35 (25%), Positives = 15/35 (42%), Gaps = 4/35 (11%)
Query: 363 DLRETDSGLYTCTASSESGETSWSASLSVEPRPGP 397
+ D+ Y+ + SA LSV+ + GP
Sbjct: 70 GATKADAAEYSVMTTGGQS----SAKLSVDLKSGP 100
>1mq8_A ICAM-1, intercellular adhesion molecule-1, CD54 antigen; IG
superfamily, rossmann fold, metal mediated protein
interf immune system; HET: NAG; 3.30A {Homo sapiens}
SCOP: b.1.1.3 b.1.1.4
Length = 291
Score = 69.9 bits (170), Expect = 3e-13
Identities = 47/294 (15%), Positives = 80/294 (27%), Gaps = 50/294 (17%)
Query: 77 EPSDATVLSGSVVEFVCRVGGDPLPTILWRRDDGKMPTGRAKILDDRSLQIENVGPQDEG 136
PS + G V C D + K + + ++ NV Q++
Sbjct: 5 SPSKVILPRGGSVLVTCSTSCDQPKLLGIETPLPK-KELLLPGNNRKVYELSNV--QEDS 61
Query: 137 LYICDVENLVGSISLRASLTVHLLRDDFRAEPKDTRVASGETALLECGPPKGQPEP--TL 194
+C G + + LTV+ + P + G+ L C G P T+
Sbjct: 62 QPMCYSNCPDGQSTAKTFLTVYWTPERVELAPLPSWQPVGKNLTLRCQVEGGAPRANLTV 121
Query: 195 HWKKNGQFIDLESSKSLDLSRRTLGWLRVRPLYWNVARPRANLNPRYIG-------RKMA 247
+ + + E + + + T L R + R L+ R G
Sbjct: 122 VLLRGEKELKREPAVG-EPAEVTTTVLVRRDHHGANFSCRTELDLRPQGLELFENTSAPY 180
Query: 248 SLLIWNHPRVN---------------RLSCFAEGSPLPS--VFWTQEGSQVL-------- 282
L + P + C +G S G Q L
Sbjct: 181 QLQTFVLPATPPQLVSPRVLEVDTQGTVVCSLDGLFPVSEAQVHLALGDQRLNPTVTYGN 240
Query: 283 -MFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVREF 335
F A + EGT R+ C+ + S + + F
Sbjct: 241 DSFSAKASVSVTAEDEGTQRL-----------TCAVILGNQSQETLQTVTIYSF 283
>1x4y_A Biregional cell adhesion molecule-related/DOWN- regulated oncogenes
(CDON)binding...; fibronectin type III, FN3; NMR {Mus
musculus} SCOP: b.1.2.1
Length = 114
Score = 65.6 bits (160), Expect = 3e-13
Identities = 23/99 (23%), Positives = 36/99 (36%), Gaps = 6/99 (6%)
Query: 411 GPPAAPVILNTTRGS---VTLGWGEPEPRGGGVAPVIGYTVEY--FSSDLQTGWVVAAHR 465
GP A P I T + + L W P+ G+ + Y SD + +
Sbjct: 7 GPVAGPYITFTDAVNETTIMLKWMYIPASNNN-TPIHGFYIYYRPTDSDNDSDYKKDMVE 65
Query: 466 ITSTSITVSDLKPDTSYMFIVRAENSHGLGIPSPVSPIT 504
++S L+P+TSY ++ N G S V
Sbjct: 66 GDRYWHSISHLQPETSYDIKMQCFNEGGESEFSNVMICE 104
Score = 28.2 bits (63), Expect = 3.0
Identities = 8/71 (11%), Positives = 16/71 (22%), Gaps = 29/71 (40%)
Query: 575 ELIPTASTAVRITWEK---------------------------YNMATVMNAATTTSYTV 607
T + + W Y V +++
Sbjct: 16 FTDAVNETTIMLKWMYIPASNNNTPIHGFYIYYRPTDSDNDSDYKKDMV--EGDRYWHSI 73
Query: 608 THLRKFTKYEF 618
+HL+ T Y+
Sbjct: 74 SHLQPETSYDI 84
>2edk_A Myosin-binding protein C, fast-type; IG fold, fast MYBP-C,
C-protein, skeletal muscle fast- isoform, MYBPCF,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 101
Score = 64.7 bits (158), Expect = 4e-13
Identities = 17/94 (18%), Positives = 27/94 (28%), Gaps = 13/94 (13%)
Query: 72 PFPISEPSDATVLSGSVVEFVCRVGGDPLPTILWRRDD-----GKMPTGRAKILDD---R 123
++ D V G VE V + ++W ++ R + D
Sbjct: 9 VLIVTPLEDQQVFVGDRVEMAVEVS-EEGAQVMWMKNGVELTREDSFKARYRFKKDGKRH 67
Query: 124 SLQIENVGPQDEGLYICDVENLVGSISLRASLTV 157
L +V +D G Y A L V
Sbjct: 68 ILIFSDVVQEDRGRYQVITNGGQCE----AELIV 97
Score = 47.3 bits (113), Expect = 5e-07
Identities = 13/79 (16%), Positives = 23/79 (29%), Gaps = 9/79 (11%)
Query: 259 RLSCFAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEG---TLRIQGVQKEDAGFFVC 315
++ V W + G ++ ++G L V +ED G +
Sbjct: 27 EMAVEV-SEEGAQVMWMKNGVELTREDSFK-ARYRFKKDGKRHILIFSDVVQEDRGRYQV 84
Query: 316 SALSVAGSTTVRAFLQVRE 334
+ A L V E
Sbjct: 85 ----ITNGGQCEAELIVEE 99
Score = 38.1 bits (89), Expect = 0.001
Identities = 7/40 (17%), Positives = 14/40 (35%), Gaps = 2/40 (5%)
Query: 164 FRAEPKDTRVASGETALLECGPPKGQPEPTLHWKKNGQFI 203
+D +V G+ + + + W KNG +
Sbjct: 11 IVTPLEDQQVFVGDRVEMAVEV--SEEGAQVMWMKNGVEL 48
Score = 33.1 bits (76), Expect = 0.051
Identities = 8/32 (25%), Positives = 12/32 (37%), Gaps = 4/32 (12%)
Query: 363 DLRETDSGLYTCTASSESGETSWSASLSVEPR 394
D+ + D G Y + A L VE +
Sbjct: 73 DVVQEDRGRYQVITNGGQC----EAELIVEEK 100
>3bn3_B ICAM-5, intercellular adhesion molecule 5, telencephalin; I domain,
integrin, allosteric mobility, cell adhesi immune
system; HET: NAG; 2.10A {Homo sapiens}
Length = 196
Score = 67.4 bits (164), Expect = 4e-13
Identities = 33/183 (18%), Positives = 52/183 (28%), Gaps = 10/183 (5%)
Query: 71 KPFPIS-EPSDATVLSGSVVEFVCRVGGDPLPTILWRRDDGKMPTGRAKILDDRSLQIEN 129
+PF +P A V G + C + T R L + Q+ +
Sbjct: 1 EPFWADLQPRVAFVERGGSLWLNCSTNCPRPERGGLETSLRRNGTQRG--LRWLARQLVD 58
Query: 130 VGPQDEGLYICDVENLVGSISLRASLTVHLLRDDFRAEPKDTRVASGETALLECGPPKGQ 189
+ + E +C ++ R + D P GE L C P
Sbjct: 59 I-REPETQPVCFFRCARRTLQARGLIRTFQRPDRVELMPLPPWQPVGENFTLSCRVPGAG 117
Query: 190 PEP--TLHWKKNGQFID----LESSKSLDLSRRTLGWLRVRPLYWNVARPRANLNPRYIG 243
P TL + Q + + T L R + RA L+ R G
Sbjct: 118 PRASLTLTLLRGAQELIRRSFAGEPPRARGAVLTATVLARREDHGANFSCRAELDLRPHG 177
Query: 244 RKM 246
+
Sbjct: 178 LGL 180
>2e6p_A Obscurin-like protein 1; IG-like domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 104
Score = 64.3 bits (157), Expect = 7e-13
Identities = 15/86 (17%), Positives = 25/86 (29%), Gaps = 9/86 (10%)
Query: 77 EPSDATVLSGSVVEFVCRVGGDPLPTILWRRDDGK-MPTGRAKILDD---RSLQIENVGP 132
+ T + V C + W +D K + + D L +
Sbjct: 16 DKVSLTFTTSERVVLTCELSR-VDFPATWYKDGQKVEESELLVVKMDGRKHRLILPEAKV 74
Query: 133 QDEGLYICDVENLVGSISLRASLTVH 158
QD G + C E + +TV
Sbjct: 75 QDSGEFECRTEGVSAF----FGVTVQ 96
Score = 44.7 bits (106), Expect = 4e-06
Identities = 14/79 (17%), Positives = 27/79 (34%), Gaps = 13/79 (16%)
Query: 259 RLSCFAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEG---TLRIQGVQKEDAGFFVC 315
L+C W ++G +V L V +G L + + +D+G F C
Sbjct: 29 VLTCEL-SRVDFPATWYKDGQKV-----EESELLVVKMDGRKHRLILPEAKVQDSGEFEC 82
Query: 316 SALSVAGSTTVRAFLQVRE 334
+ + V++
Sbjct: 83 ----RTEGVSAFFGVTVQD 97
Score = 35.1 bits (81), Expect = 0.011
Identities = 8/35 (22%), Positives = 14/35 (40%), Gaps = 4/35 (11%)
Query: 363 DLRETDSGLYTCTASSESGETSWSASLSVEPRPGP 397
+ + DSG + C S ++V+ GP
Sbjct: 71 EAKVQDSGEFECRTEGVSA----FFGVTVQDPSGP 101
Score = 34.7 bits (80), Expect = 0.014
Identities = 9/43 (20%), Positives = 17/43 (39%), Gaps = 4/43 (9%)
Query: 167 EPKDTRVASGETALLECGPPKGQPEPTLHWKKNGQFIDLESSK 209
+ + E +L C + + W K+GQ +E S+
Sbjct: 16 DKVSLTFTTSERVVLTCEL--SRVDFPATWYKDGQ--KVEESE 54
>2cry_A KIN of IRRE-like protein 3; IG fold, KIN of irregular chiasm-like
protein 3, nephrin- like 2, structural genomics, NPPSFA;
NMR {Homo sapiens} SCOP: b.1.1.1
Length = 122
Score = 64.9 bits (158), Expect = 7e-13
Identities = 21/96 (21%), Positives = 31/96 (32%), Gaps = 12/96 (12%)
Query: 75 ISEPSDATVLSGSVVEFVCRVGGDPLP-TILWRRDDGKM---PTGRAKILDDR------- 123
IS L G + C + P P I W + + +GR +
Sbjct: 17 ISSTQTQHALHGEKGQIKCFIRSTPPPDRIAWSWKENVLESGTSGRYTVETISTEEGVIS 76
Query: 124 SLQIENVGPQDEG-LYICDVENLVGSISLRASLTVH 158
+L I N+ D +Y C N GS + L
Sbjct: 77 TLTISNIVRADFQTIYNCTAWNSFGSDTEIIRLKEQ 112
Score = 54.5 bits (131), Expect = 2e-09
Identities = 17/81 (20%), Positives = 34/81 (41%), Gaps = 6/81 (7%)
Query: 259 RLSCFAEGSPLP-SVFWTQEGSQVLMFPGNAYGHLHVTQEG----TLRIQGVQKED-AGF 312
++ CF +P P + W+ + + + Y ++ E TL I + + D
Sbjct: 32 QIKCFIRSTPPPDRIAWSWKENVLESGTSGRYTVETISTEEGVISTLTISNIVRADFQTI 91
Query: 313 FVCSALSVAGSTTVRAFLQVR 333
+ C+A + GS T L+ +
Sbjct: 92 YNCTAWNSFGSDTEIIRLKEQ 112
Score = 39.1 bits (91), Expect = 6e-04
Identities = 12/63 (19%), Positives = 23/63 (36%), Gaps = 4/63 (6%)
Query: 147 GSISLRASLTVHLLRDDFRAEPKDTRVASGETALLECGPPKGQPEP-TLHWKKNGQFIDL 205
GS +LTV+ + + GE ++C + P P + W ++
Sbjct: 1 GSSGSSGTLTVNG-PPIISS-TQTQHALHGEKGQIKC-FIRSTPPPDRIAWSWKENVLES 57
Query: 206 ESS 208
+S
Sbjct: 58 GTS 60
>2if7_A SLAM family member 6; NTB-A, homophilic receptor, immune system;
3.00A {Homo sapiens}
Length = 193
Score = 66.5 bits (162), Expect = 8e-13
Identities = 22/163 (13%), Positives = 43/163 (26%), Gaps = 21/163 (12%)
Query: 76 SEPSDATVLSGSVVEFVCRV-GGDPLPTILWRRDDGKMPT-------------------G 115
P + G V G+ + I W ++ +
Sbjct: 3 LTPLMVNGILGESVTLPLEFPAGEKVNFITWLFNETSLAFIVPHETKSPEIHVTNPKQGK 62
Query: 116 RAKILDDRSLQIENVGPQDEGLYICDVENLVGSISLRASLT-VHLLRDDFRAEPKDTRVA 174
R SLQ+ N+ +D G Y + + +L + LR+
Sbjct: 63 RLNFTQSYSLQLSNLKMEDTGSYRAQISTKTSAKLSSYTLRILRQLRNIQVTNHSQLFQN 122
Query: 175 SGETALLECGPPKGQPEPTLHWKKNGQFIDLESSKSLDLSRRT 217
L C + W+ G + + + ++ R
Sbjct: 123 MTCELHLTCSVEDADDNVSFRWEALGNTLSSQPNLTVSWDPRI 165
Score = 50.0 bits (119), Expect = 3e-07
Identities = 24/186 (12%), Positives = 48/186 (25%), Gaps = 40/186 (21%)
Query: 235 ANLNPRYIGRKMASLLIWNHPRVNRLSCFAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHV 294
L + + + + W + + P + T L+
Sbjct: 16 VTLPLEFPAGEKVNFITWLFNETSLAFIVPHETKSPEIHVTN---------PKQGKRLNF 66
Query: 295 TQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVREFCVLPKGTFTLGQPNLATGN 354
TQ +L++ ++ ED G + + + L++ L T
Sbjct: 67 TQSYSLQLSNLKMEDTGSYRAQISTKTSAKLSSYTLRILRQ--LRNIQVTNHSQLFQNMT 124
Query: 355 SDLR-----------------------------RIACDLRETDSGLYTCTASSESGETSW 385
+L ++ D R + YTC A + S+
Sbjct: 125 CELHLTCSVEDADDNVSFRWEALGNTLSSQPNLTVSWDPRISSEQDYTCIAENAVSNLSF 184
Query: 386 SASLSV 391
S S
Sbjct: 185 SVSAQK 190
Score = 42.3 bits (99), Expect = 1e-04
Identities = 15/96 (15%), Positives = 24/96 (25%), Gaps = 8/96 (8%)
Query: 63 LIAKEALIKPFPISEPSDATVLSGSVVEFVCRV-GGDPLPTILWRRDDGKMPTGRAKILD 121
L L ++ S + C V D + W + +
Sbjct: 102 LRILRQLRNIQ-VTNHSQLFQNMTCELHLTCSVEDADDNVSFRWEALGNTLSSQP----- 155
Query: 122 DRSLQIENVGPQDEGLYICDVENLVGSISLRASLTV 157
+ E Y C EN V ++S S
Sbjct: 156 -NLTVSWDPRISSEQDYTCIAENAVSNLSFSVSAQK 190
Score = 29.6 bits (66), Expect = 2.4
Identities = 7/33 (21%), Positives = 16/33 (48%)
Query: 363 DLRETDSGLYTCTASSESGETSWSASLSVEPRP 395
+L+ D+G Y S+++ S +L + +
Sbjct: 76 NLKMEDTGSYRAQISTKTSAKLSSYTLRILRQL 108
Score = 28.4 bits (63), Expect = 4.8
Identities = 25/213 (11%), Positives = 47/213 (22%), Gaps = 75/213 (35%)
Query: 168 PKDTRVASGETALLECGPPKGQPEPTLHWKKNGQFIDLESSKSLDLSRRTLGWLRVRPLY 227
P GE+ L P G+ + W N + + +
Sbjct: 5 PLMVNGILGESVTLPLEFPAGEKVNFITWLFNETSL------------AFIVPHETKSPE 52
Query: 228 WNVARPRANLNPRYIGRKMASLLIWN---------------------------------H 254
+V P+ R + SL + N +
Sbjct: 53 IHVTNPK--QGKRLNFTQSYSLQLSNLKMEDTGSYRAQISTKTSAKLSSYTLRILRQLRN 110
Query: 255 PRVNR-------------LSCFAE-GSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTL 300
+V L+C E S W G+ + + L
Sbjct: 111 IQVTNHSQLFQNMTCELHLTCSVEDADDNVSFRWEALGNTLS-------------SQPNL 157
Query: 301 RI-QGVQKEDAGFFVCSALSVAGSTTVRAFLQV 332
+ + + C A + + + Q
Sbjct: 158 TVSWDPRISSEQDYTCIAENAVSNLSFSVSAQK 190
>2cpc_A KIAA0657 protein; immunoglobulin domain, IG domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 113
Score = 64.0 bits (156), Expect = 1e-12
Identities = 16/87 (18%), Positives = 32/87 (36%), Gaps = 9/87 (10%)
Query: 76 SEPSDATVLSGSVVEFVCRVGGDPLPTILWRRDDGK-MPTGRAKILDD---RSLQIENVG 131
S + V C + P + W +D + + + + + R L + V
Sbjct: 18 SGKVYVAAVRLERVVLTCELC-RPWAEVRWTKDGEEVVESPALLLQKEDTVRRLVLPAVQ 76
Query: 132 PQDEGLYICDVENLVGSISLRASLTVH 158
+D G Y+C+ + S ++TV
Sbjct: 77 LEDSGEYLCE----IDDESASFTVTVT 99
Score = 49.8 bits (119), Expect = 1e-07
Identities = 19/79 (24%), Positives = 31/79 (39%), Gaps = 13/79 (16%)
Query: 259 RLSCFAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEG---TLRIQGVQKEDAGFFVC 315
L+C P V WT++G +V A + +E L + VQ ED+G ++C
Sbjct: 32 VLTCEL-CRPWAEVRWTKDGEEV--VESPAL---LLQKEDTVRRLVLPAVQLEDSGEYLC 85
Query: 316 SALSVAGSTTVRAFLQVRE 334
+ + V E
Sbjct: 86 ----EIDDESASFTVTVTE 100
Score = 39.4 bits (92), Expect = 5e-04
Identities = 12/45 (26%), Positives = 20/45 (44%), Gaps = 5/45 (11%)
Query: 363 DLRETDSGLYTCTASSESGETSWSASLSVEPRPGPHAVHRMPDSG 407
++ DSG Y C + S S +++V P ++ P SG
Sbjct: 74 AVQLEDSGEYLCEI----DDESASFTVTVTEPP-VRIIYSGPSSG 113
Score = 34.7 bits (80), Expect = 0.018
Identities = 8/46 (17%), Positives = 17/46 (36%), Gaps = 4/46 (8%)
Query: 164 FRAEPKDTRVASGETALLECGPPKGQPEPTLHWKKNGQFIDLESSK 209
+ + E +L C +P + W K+G+ ++ S
Sbjct: 16 YPSGKVYVAAVRLERVVLTC--ELCRPWAEVRWTKDGE--EVVESP 57
>3tes_A Tencon; fibronectin type III domain, FN3, consensus design, de
novo; 2.50A {Synthetic}
Length = 98
Score = 63.2 bits (154), Expect = 1e-12
Identities = 21/105 (20%), Positives = 35/105 (33%), Gaps = 10/105 (9%)
Query: 412 PPAAPVILNTTRGSVTLGWGEPEPRGGGVAPVIGYTVEYFSSDLQTGWVVAAHRITSTSI 471
P V+ T S+ L W P+ A + ++Y S+ + + S
Sbjct: 4 APKNLVVSEVTEDSLRLSWTAPD------AAFDSFMIQYQESEKVGEAINLTVPGSERSY 57
Query: 472 TVSDLKPDTSYMFIVRAENSHGLGIPSPVSPITRTLGLNSLVPQH 516
++ LKP T Y + +P+S T G H
Sbjct: 58 DLTGLKPGTEYTVSIYGVKGGHRS--NPLSAEFTTGGH--HHHHH 98
Score = 27.8 bits (62), Expect = 3.7
Identities = 6/22 (27%), Positives = 11/22 (50%)
Query: 600 ATTTSYTVTHLRKFTKYEFFLV 621
+ SY +T L+ T+Y +
Sbjct: 52 GSERSYDLTGLKPGTEYTVSIY 73
>2pet_A Lutheran blood group glycoprotein; immunoglobulin superfamily.,
cell adhesion; 1.70A {Homo sapiens} PDB: 2pf6_A
Length = 231
Score = 66.8 bits (162), Expect = 1e-12
Identities = 31/179 (17%), Positives = 50/179 (27%), Gaps = 43/179 (24%)
Query: 75 ISEPSDATVLSGSVVEFVCRV-GGDPLPTILWRRDDGKMPT------------------- 114
+S P V+ G V C G + W D
Sbjct: 4 LSVPPLVEVMRGKSVILDCTPTGTHDHYMLEWFLTDRSGARPRLASAEMQGSELQVTMHD 63
Query: 115 -----GRAKILDDRSLQIENVGPQDEGLYICDVE-NLVGSISLRASLTVHLLRDDFRAEP 168
++ L + DE Y+C V G+ A L V A+P
Sbjct: 64 TRGRSPPYQLDSQGRLVLAEAQVGDERDYVCVVRAGAAGTAEATARLNVF-------AKP 116
Query: 169 KDTRV----------ASGETALLECGPPKGQPEPTLHWKKNGQFIDLESSKSLDLSRRT 217
+ T V + C G P P + W +NGQ +++ + + +
Sbjct: 117 EATEVSPNKGTLSVMEDSAQEIATCNSRNGNPAPKITWYRNGQRLEVPVEMNPEGYMTS 175
Score = 35.6 bits (81), Expect = 0.030
Identities = 17/93 (18%), Positives = 28/93 (30%), Gaps = 20/93 (21%)
Query: 260 LSCFAEGSP-LPSVFWTQ---EGSQVLMFPGNAYGH---------------LHVTQEGTL 300
L C G+ + W G++ + G + +G L
Sbjct: 20 LDCTPTGTHDHYMLEWFLTDRSGARPRLASAEMQGSELQVTMHDTRGRSPPYQLDSQGRL 79
Query: 301 RIQGVQKEDAGFFVCSALSV-AGSTTVRAFLQV 332
+ Q D +VC + AG+ A L V
Sbjct: 80 VLAEAQVGDERDYVCVVRAGAAGTAEATARLNV 112
Score = 35.2 bits (80), Expect = 0.039
Identities = 30/202 (14%), Positives = 55/202 (27%), Gaps = 52/202 (25%)
Query: 168 PKDTRVASGETALLECGPPKGQPEPTLHWKK-------------NGQFIDLESSKSLDLS 214
P V G++ +L+C P L W Q +L+ +
Sbjct: 7 PPLVEVMRGKSVILDCTPTGTHDHYMLEWFLTDRSGARPRLASAEMQGSELQVTMHDTRG 66
Query: 215 RRTLGWL---------------------RVRPLYWNVARPRANLN------PRYIGRKMA 247
R L VR A A LN +
Sbjct: 67 RSPPYQLDSQGRLVLAEAQVGDERDYVCVVRAGAAGTAEATARLNVFAKPEATEVSPNKG 126
Query: 248 SLLIWNHPRVNRLSCFAE-GSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEG-------- 298
+L + +C + G+P P + W + G ++ + ++
Sbjct: 127 TLSVMEDSAQEIATCNSRNGNPAPKITWYRNGQRLEVPVEMNPEGYMTSRTVREASGLLS 186
Query: 299 ---TLRIQGVQKEDAGFFVCSA 317
TL ++ + + F C+A
Sbjct: 187 LTSTLYLRLRKDDRDASFHCAA 208
>3m45_A Cell adhesion molecule 2; IG fold, dimer, disulfide bond,
glycoprotein, immunoglobulin membrane, transmembrane;
HET: NAG; 2.21A {Mus musculus}
Length = 108
Score = 63.3 bits (154), Expect = 1e-12
Identities = 21/99 (21%), Positives = 34/99 (34%), Gaps = 14/99 (14%)
Query: 72 PFPISEPSDATVLSGSVVEFVCRVGGDPLPTILWRRDDGKMPT-GRAKILDDR------- 123
+ TV+ G CRV + ++ W + K L D
Sbjct: 7 QGQFPLTQNVTVVEGGTAILTCRVDQNDNTSLQWSNPAQQTLYFDDKKALRDNRIELVRA 66
Query: 124 -----SLQIENVGPQDEGLYICDVENLVGSISLRASLTV 157
S+ + +V DEG Y C + + + +A LTV
Sbjct: 67 SWHELSISVSDVSLSDEGQYTCSL-FTMPVKTSKAYLTV 104
Score = 46.8 bits (111), Expect = 9e-07
Identities = 18/82 (21%), Positives = 31/82 (37%), Gaps = 8/82 (9%)
Query: 260 LSCFAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQ-------EGTLRIQGVQKEDAGF 312
L+C + + S+ W+ Q L F + + E ++ + V D G
Sbjct: 26 LTCRVDQNDNTSLQWSNPAQQTLYFDDKKALRDNRIELVRASWHELSISVSDVSLSDEGQ 85
Query: 313 FVCSALSVAGSTTVRAFLQVRE 334
+ CS L T +A+L V
Sbjct: 86 YTCS-LFTMPVKTSKAYLTVLG 106
Score = 28.7 bits (64), Expect = 2.3
Identities = 9/36 (25%), Positives = 13/36 (36%), Gaps = 1/36 (2%)
Query: 168 PKDTRVASGETALLECGPPKGQPEPTLHWKKNGQFI 203
++ V G TA+L C +L W Q
Sbjct: 13 TQNVTVVEGGTAILTC-RVDQNDNTSLQWSNPAQQT 47
Score = 27.5 bits (61), Expect = 4.8
Identities = 9/29 (31%), Positives = 15/29 (51%), Gaps = 1/29 (3%)
Query: 363 DLRETDSGLYTCTASSESGETSWSASLSV 391
D+ +D G YTC+ + + A L+V
Sbjct: 77 DVSLSDEGQYTCSLFTM-PVKTSKAYLTV 104
>2ekj_A Collagen alpha-1(XX) chain; KIAA1510, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 105
Score = 63.2 bits (154), Expect = 2e-12
Identities = 20/98 (20%), Positives = 36/98 (36%), Gaps = 8/98 (8%)
Query: 410 PGPPAAPVILNTTRGSVTLGWGEPEPRGGGVAPVIGYTVEYFSSDLQTGWVVAAHRITST 469
PP+ + + T S+ + W P V+ Y + Y + + +
Sbjct: 8 RSPPSNLALASETPDSLQVSWTPPL------GRVLHYWLTYAPASGLGPEKSVSVPGARS 61
Query: 470 SITVSDLKPDTSYMFIVRAENSHGLGIPSPVSPITRTL 507
+T+ DL+ T Y +V A + G VS +T
Sbjct: 62 HVTLPDLQAATKYRVLVSAIYAAGRS--EAVSATGQTA 97
>2w1n_A O-GLCNACASE NAGJ; hexosaminidase, glycoside hydrolase, fibronectin
type-III, beta-N-acetylglucosaminidase, cohesin,
hydrolase; 1.80A {Clostridium perfringens}
Length = 238
Score = 66.1 bits (160), Expect = 3e-12
Identities = 25/124 (20%), Positives = 38/124 (30%), Gaps = 12/124 (9%)
Query: 383 TSWSASLSVEPRPGPHAVHRMPDSGLFPGPPAAPVILNTTRGSVTLGWGEPEPRGGGVAP 442
+ + + P + +VT+ W EPE G
Sbjct: 124 DGEGLVHEIAGTEKTVNIIEGTSPEIVVNPVRDFKASEINKKNVTVTWTEPETTEG---- 179
Query: 443 VIGYTVEYFSSDLQTGWVVAAHRITSTSITVSDLKPDTSYMFIVRAENSHGLGIPSPVSP 502
+ GY + + G VA TS T L T Y F + A+ S+G S
Sbjct: 180 LEGYILY------KDGKKVAEIGKDETSYTFKKLNRHTIYNFKIAAKYSNGEV--SSKES 231
Query: 503 ITRT 506
+T
Sbjct: 232 LTLR 235
Score = 34.9 bits (79), Expect = 0.046
Identities = 24/208 (11%), Positives = 48/208 (23%), Gaps = 48/208 (23%)
Query: 412 PPAAPVILNTTRGSVTLGWGEPEPRGGGVAPVIGYTVEYFSSDLQTGWVVAAHRITSTSI 471
A + + V + + E V S L + A + +
Sbjct: 55 ENAFEYVEAISDDGVFVNAKKIEDGKVRV----------LVSSLTGEPLPAKEVLAKVVL 104
Query: 472 TVSDLKPDTSYMFIVRAENSHGLGIPSPVSPITRTLGLNSLVPQHLLDEARARLGTKVVN 531
++ + G G+ ++ +T+ + ++ +N
Sbjct: 105 RAEAKTEGSNLSVTNSSVG-DGEGLVHEIAGTEKTVNIIEGTSPEIVVNPVRDFKASEIN 163
Query: 532 LRELIPTASTAVRITWEVSWGSVPQHLLDEARARLGTKVVNLRELIPTASTAVRITWEKY 591
V +TW P + +
Sbjct: 164 --------KKNVTVTWTE----------------------------PETTEGLEGYILYK 187
Query: 592 NMATVMN-AATTTSYTVTHLRKFTKYEF 618
+ V TSYT L + T Y F
Sbjct: 188 DGKKVAEIGKDETSYTFKKLNRHTIYNF 215
>2yuv_A Myosin-binding protein C, SLOW-type; SLOW-type myosin-binding
protein C, immunoglobulin domain, structural genomics,
NPPSFA; NMR {Homo sapiens} PDB: 2yxm_A
Length = 100
Score = 62.4 bits (152), Expect = 3e-12
Identities = 19/90 (21%), Positives = 28/90 (31%), Gaps = 9/90 (10%)
Query: 72 PFPISEPSDATVLSGSVVEFVCRVGGDPLPTILWRRDDGKM-PTGRAKILDD---RSLQI 127
F V G V FV + DP + W ++ ++ P+ + R L I
Sbjct: 9 AFAKILDPAYQVDKGGRVRFVVELA-DPKLEVKWYKNGQEIRPSTKYIFEHKGCQRILFI 67
Query: 128 ENVGPQDEGLYICDVENLVGSISLRASLTV 157
N D+ Y G L V
Sbjct: 68 NNCQMTDDSEYYVT----AGDEKCSTELFV 93
Score = 47.8 bits (114), Expect = 4e-07
Identities = 15/79 (18%), Positives = 20/79 (25%), Gaps = 13/79 (16%)
Query: 259 RLSCFAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEG---TLRIQGVQKEDAGFFVC 315
R P V W + G ++ +G L I Q D +
Sbjct: 27 RFVVEL-ADPKLEVKWYKNGQEI-----RPSTKYIFEHKGCQRILFINNCQMTDDSEYYV 80
Query: 316 SALSVAGSTTVRAFLQVRE 334
AG L VR
Sbjct: 81 ----TAGDEKCSTELFVRS 95
Score = 35.4 bits (82), Expect = 0.008
Identities = 13/54 (24%), Positives = 18/54 (33%), Gaps = 6/54 (11%)
Query: 168 PKDTRVASGETALLECGPPKGQPEPTLHWKKNGQFIDLESSK---SLDLSRRTL 218
+V G P+ + W KNGQ I S+K +R L
Sbjct: 15 DPAYQVDKGGRVRFVV--ELADPKLEVKWYKNGQEIR-PSTKYIFEHKGCQRIL 65
Score = 33.9 bits (78), Expect = 0.024
Identities = 10/33 (30%), Positives = 13/33 (39%), Gaps = 4/33 (12%)
Query: 363 DLRETDSGLYTCTASSESGETSWSASLSVEPRP 395
+ + TD Y TA G+ S L V P
Sbjct: 69 NCQMTDDSEYYVTA----GDEKCSTELFVRSGP 97
>1gsm_A Madcam-1, mucosal addressin cell adhesion molecule-1; cell adhesion
protein, immunoglobulin fold, I-SET fold, cell adhesion
glycoprotein; 1.9A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4
PDB: 1bqs_A*
Length = 210
Score = 65.3 bits (158), Expect = 3e-12
Identities = 25/167 (14%), Positives = 46/167 (27%), Gaps = 12/167 (7%)
Query: 71 KPFPI-SEPSDATVLSGSVVEFVCRV-GGDPLPTILWRRDDGKMPTGRAKILDDRS-LQI 127
KP + V G+ + CR+ D ++ WR D G + RS L +
Sbjct: 6 KPLQVEPPEPVVAVALGASRQLTCRLACADRGASVQWRGLD--TSLGAVQSDTGRSVLTV 63
Query: 128 ENVGPQDEGLYICDVENLVGSISLRASLTVHLLRDDFRAEPKDTRVASGETALLEC---- 183
N G +C + L V+ + P + C
Sbjct: 64 RNASLSAAGTRVCVGSCGGRTFQHTVQLLVYAFPNQLTVSPA---ALVPGDPEVACTAHK 120
Query: 184 GPPKGQPEPTLHWKKNGQFIDLESSKSLDLSRRTLGWLRVRPLYWNV 230
P + GQ ++ + ++ + + V
Sbjct: 121 VTPVDPNALSFSLLVGGQELEGAQALGPEVQEEEEEPQGDEDVLFRV 167
Score = 33.0 bits (74), Expect = 0.18
Identities = 14/78 (17%), Positives = 22/78 (28%), Gaps = 8/78 (10%)
Query: 259 RLSCFAEGS-PLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSA 317
+L+C + SV W + + T L ++ AG VC
Sbjct: 26 QLTCRLACADRGASVQWRGLDTSL-------GAVQSDTGRSVLTVRNASLSAAGTRVCVG 78
Query: 318 LSVAGSTTVRAFLQVREF 335
+ L V F
Sbjct: 79 SCGGRTFQHTVQLLVYAF 96
>3qht_C Monobody YSMB-1; fibronectin type III, yeast small ubiquitin-like
modifier, S NOVO protein; 2.40A {Artificial gene}
Length = 97
Score = 62.0 bits (151), Expect = 3e-12
Identities = 21/99 (21%), Positives = 34/99 (34%), Gaps = 8/99 (8%)
Query: 410 PGPPAAPVILNTTRGSVTLGWGEPEPRGGGVAPVIGYTVEYFSSDLQTGWVVAAHRITST 469
P ++ T S+ + W + V Y + Y + + +S+
Sbjct: 5 SSVPTKLEVVAATPTSLLISWDASS------SSVSYYRITYGETGGNSPVQEFTVPGSSS 58
Query: 470 SITVSDLKPDTSYMFIVRAENSHGLGIPS--PVSPITRT 506
+ T+S L P Y V A S+ S P S RT
Sbjct: 59 TATISGLSPGVDYTITVYAYYSYYDLYYSYSPSSINYRT 97
Score = 28.1 bits (63), Expect = 2.6
Identities = 7/65 (10%), Positives = 20/65 (30%), Gaps = 19/65 (29%)
Query: 572 NLRELIPTASTAVRITWE------------------KYNMATVMNAATTTSYTVTHLRKF 613
L ++ T++ I+W+ + ++++ T++ L
Sbjct: 10 KLE-VVAATPTSLLISWDASSSSVSYYRITYGETGGNSPVQEFTVPGSSSTATISGLSPG 68
Query: 614 TKYEF 618
Y
Sbjct: 69 VDYTI 73
>2h41_A Fibronectin; beta sandwich, cell adhesion, structural protein; NMR
{Homo sapiens} PDB: 2h45_A
Length = 95
Score = 62.1 bits (151), Expect = 3e-12
Identities = 20/97 (20%), Positives = 33/97 (34%), Gaps = 8/97 (8%)
Query: 410 PGPPAAPVILNTTRGSVTLGWGEPEPRGGGVAPVIGYTVEYFSSDLQTGWVVAAHRITST 469
+ + T S + W V G+ VEY S+ T+T
Sbjct: 6 HLVATSESVTEITASSFVVSWVSAS------DTVSGFRVEYELSEEGDEPQYLDLPSTAT 59
Query: 470 SITVSDLKPDTSYMFIVRAENSHGLGIPSPVSPITRT 506
S+ + DL P Y+ V + G S + ++T
Sbjct: 60 SVNIPDLLPGRKYIVNVYQISEDGEQ--SLILSTSQT 94
>2edy_A Receptor-type tyrosine-protein phosphatase F; LAR protein,
leukocyte antigen related, structural genomics, NPPSFA;
NMR {Homo sapiens}
Length = 103
Score = 61.9 bits (151), Expect = 3e-12
Identities = 33/102 (32%), Positives = 42/102 (41%), Gaps = 13/102 (12%)
Query: 410 PGPPAAPVILNTTRGSVTLGWGEP---EPRGGGVAPVIGYTVEYFSSDLQTGWVVAAHRI 466
G P + T + L W P E G +I YTV + + Q
Sbjct: 9 SGFPQNLHVTGLTTSTTELAWDPPVLAERNG----RIISYTVVFRDINSQQELQNIT--- 61
Query: 467 TSTSITVSDLKPDTSYMFIVRAENSHGLGIPSPVSPIT-RTL 507
T T T++ LKPDT+Y VRA S G G SP I RT+
Sbjct: 62 TDTRFTLTGLKPDTTYDIKVRAWTSKGSGPLSP--SIQSRTM 101
Score = 31.5 bits (72), Expect = 0.21
Identities = 9/64 (14%), Positives = 20/64 (31%), Gaps = 20/64 (31%)
Query: 575 ELIPTASTAVRITWE----------------KYNMA----TVMNAATTTSYTVTHLRKFT 614
+ ++ + W+ + + N T T +T+T L+ T
Sbjct: 16 HVTGLTTSTTELAWDPPVLAERNGRIISYTVVFRDINSQQELQNITTDTRFTLTGLKPDT 75
Query: 615 KYEF 618
Y+
Sbjct: 76 TYDI 79
>2cum_A Tenascin-X; hexabrachion-like, fibronectin type III domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
b.1.2.1
Length = 105
Score = 62.1 bits (151), Expect = 4e-12
Identities = 26/106 (24%), Positives = 35/106 (33%), Gaps = 10/106 (9%)
Query: 410 PGPPAAPVILNTTRGSVTLGWGEPEPRGGGVAPVIGYTVEYFSSDLQTGWVVAAHRITST 469
P T + L W EP GY + + + QT ++ T
Sbjct: 8 LEAPRDLEAKEVTPRTALLTWTEPP------VRPAGYLLSFHTPGGQTQEILLPG--GIT 59
Query: 470 SITVSDLKPDTSYMFIVRAENSHGLGIPSPVSPITRTLGLNSLVPQ 515
S + L P TSY ++A L PVS T GL P
Sbjct: 60 SHQLLGLFPSTSYNARLQAMWGQSLL--PPVSTSFTTGGLRISGPS 103
Score = 28.6 bits (64), Expect = 2.5
Identities = 9/57 (15%), Positives = 14/57 (24%), Gaps = 16/57 (28%)
Query: 581 STAVRITWE-------KY---------NMATVMNAATTTSYTVTHLRKFTKYEFFLV 621
+TW Y ++ TS+ + L T Y L
Sbjct: 21 PRTALLTWTEPPVRPAGYLLSFHTPGGQTQEILLPGGITSHQLLGLFPSTSYNARLQ 77
>1j8k_A Fibronectin; EDA, TYPEIII domain, protein binding; NMR {Homo
sapiens} SCOP: b.1.2.1
Length = 94
Score = 61.7 bits (150), Expect = 4e-12
Identities = 17/93 (18%), Positives = 29/93 (31%), Gaps = 6/93 (6%)
Query: 412 PPAAPVILNTTRGSVTLGWGEPEPRGGGVAPVIGYTVEYFSSDLQTGWVVAAHRITSTSI 471
P + S+ + W P+ V Y V Y S + + A +
Sbjct: 4 RPKGLAFTDVDVDSIKIAWESPQ------GQVSRYRVTYSSPEDGIHELFPAPDGEEDTA 57
Query: 472 TVSDLKPDTSYMFIVRAENSHGLGIPSPVSPIT 504
+ L+P + Y V A + P + T
Sbjct: 58 ELQGLRPGSEYTVSVVALHDDMESQPLIGTQST 90
Score = 27.4 bits (61), Expect = 4.6
Identities = 8/67 (11%), Positives = 18/67 (26%), Gaps = 18/67 (26%)
Query: 581 STAVRITWEK------------------YNMATVMNAATTTSYTVTHLRKFTKYEFFLVP 622
+++I WE + + + LR ++Y +V
Sbjct: 15 VDSIKIAWESPQGQVSRYRVTYSSPEDGIHELFPAPDGEEDTAELQGLRPGSEYTVSVVA 74
Query: 623 FFKTVEG 629
+E
Sbjct: 75 LHDDMES 81
>1wwc_A Protein (NT-3 growth factor receptor TRKC); TRK receptor, receptor
tyrosine kinase, 3D-domain swapping, transferase; 1.90A
{Homo sapiens} SCOP: b.1.1.4
Length = 118
Score = 62.5 bits (152), Expect = 4e-12
Identities = 12/91 (13%), Positives = 29/91 (31%), Gaps = 10/91 (10%)
Query: 75 ISEPSDATVLSGSVVEFVCRVGGDPLPTILWRRDDG--------KMPTGRAKILDDRSLQ 126
+ + + +E V G+P PT+ W + + + + + L
Sbjct: 11 VVSLEEPELRLEHCIE--FVVRGNPPPTLHWLHNGQPLRESKIIHVEYYQEGEISEGCLL 68
Query: 127 IENVGPQDEGLYICDVENLVGSISLRASLTV 157
+ G Y +N +G+ + +
Sbjct: 69 FNKPTHYNNGNYTLIAKNPLGTANQTINGHF 99
Score = 54.1 bits (130), Expect = 3e-09
Identities = 13/80 (16%), Positives = 25/80 (31%), Gaps = 8/80 (10%)
Query: 260 LSCFAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQE-----GTLRIQGVQKEDAGFFV 314
+ G+P P++ W G + + H+ QE G L + G +
Sbjct: 25 IEFVVRGNPPPTLHWLHNGQPL---RESKIIHVEYYQEGEISEGCLLFNKPTHYNNGNYT 81
Query: 315 CSALSVAGSTTVRAFLQVRE 334
A + G+ +
Sbjct: 82 LIAKNPLGTANQTINGHFLK 101
Score = 45.2 bits (107), Expect = 4e-06
Identities = 10/51 (19%), Positives = 17/51 (33%), Gaps = 7/51 (13%)
Query: 363 DLRETDSGLYTCTASSESGETSWSASLSVEPRPGPHAVHRMPDSGLFPGPP 413
++G YT A + G + + + P P + P PP
Sbjct: 71 KPTHYNNGNYTLIAKNPLGTANQTINGHFLKEPF-------PVDEVSPTPP 114
Score = 33.3 bits (76), Expect = 0.061
Identities = 18/67 (26%), Positives = 28/67 (41%), Gaps = 10/67 (14%)
Query: 168 PKDTRVASGETAL---LECGPPKGQPEPTLHWKKNGQ------FIDLESSKSLDLSRRTL 218
P+ + E L +E +G P PTLHW NGQ I +E + ++S L
Sbjct: 9 PRVVSLEEPELRLEHCIEF-VVRGNPPPTLHWLHNGQPLRESKIIHVEYYQEGEISEGCL 67
Query: 219 GWLRVRP 225
+ +
Sbjct: 68 LFNKPTH 74
>2ee3_A Collagen alpha-1(XX) chain; KIAA1510, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 108
Score = 61.7 bits (150), Expect = 6e-12
Identities = 18/98 (18%), Positives = 27/98 (27%), Gaps = 7/98 (7%)
Query: 410 PGPPAAPVILNTTRGSVTLGWGEPEPRGGGVAPVIGYTVEYFSSDLQTGWVVAAHRITST 469
PP + + + + W PV V Y SS+ A +T
Sbjct: 8 LAPPRHLGFSDVSHDAARVFWEGAPR------PVRLVRVTYVSSEGGHSGQTEAPG-NAT 60
Query: 470 SITVSDLKPDTSYMFIVRAENSHGLGIPSPVSPITRTL 507
S + L T+Y V G T+
Sbjct: 61 SAMLGPLSSSTTYTVRVTCLYPGGGSSTLTGRVTTKKA 98
Score = 27.8 bits (62), Expect = 3.8
Identities = 9/55 (16%), Positives = 12/55 (21%), Gaps = 17/55 (30%)
Query: 581 STAVRITWE-------KY----------NMATVMNAATTTSYTVTHLRKFTKYEF 618
A R+ WE + TS + L T Y
Sbjct: 21 HDAARVFWEGAPRPVRLVRVTYVSSEGGHSGQTEAPGNATSAMLGPLSSSTTYTV 75
>2rb8_A Tenascin; beta sheet,loop design, alternative splicing, cell
adhesion, coiled coil, EGF-like domain, extracellular
matrix, glycoprotein; 1.45A {Homo sapiens} PDB: 2rbl_A
1ten_A
Length = 104
Score = 61.3 bits (149), Expect = 6e-12
Identities = 17/95 (17%), Positives = 32/95 (33%), Gaps = 6/95 (6%)
Query: 410 PGPPAAPVILNTTRGSVTLGWGEPEPRGGGVAPVIGYTVEYFSSDLQTGWVVAAHRITST 469
P+ + + T + + W P PV G+ + Y D+
Sbjct: 3 LDAPSQIEVKDVTDTTALITWMPPS------QPVDGFELTYGIKDVPGDRTTIDLTEDEN 56
Query: 470 SITVSDLKPDTSYMFIVRAENSHGLGIPSPVSPIT 504
++ +LKPDT Y + + P+ + T
Sbjct: 57 QYSIGNLKPDTEYEVSLISRRGDMSSNPAKETFTT 91
Score = 27.7 bits (62), Expect = 3.5
Identities = 7/35 (20%), Positives = 15/35 (42%)
Query: 595 TVMNAATTTSYTVTHLRKFTKYEFFLVPFFKTVEG 629
T+ Y++ +L+ T+YE L+ +
Sbjct: 48 TIDLTEDENQYSIGNLKPDTEYEVSLISRRGDMSS 82
>2x1w_L Vascular endothelial growth factor receptor 2; hormone-signaling
protein complex, angiogenesis, glycoprotein, HOST-virus
interaction, membrane; HET: NAG BMA; 2.70A {Homo
sapiens} PDB: 2x1x_R*
Length = 213
Score = 64.4 bits (156), Expect = 7e-12
Identities = 18/103 (17%), Positives = 31/103 (30%), Gaps = 14/103 (13%)
Query: 70 IKPFPISEPSDATVLSGSVVEFVCRVGGDPLPTILWR--------------RDDGKMPTG 115
I +S + G + C + I + D K +G
Sbjct: 104 IYDVVLSPSHGIELSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSG 163
Query: 116 RAKILDDRSLQIENVGPQDEGLYICDVENLVGSISLRASLTVH 158
+L I+ V D+GLY C + + + + VH
Sbjct: 164 SEMKKFLSTLTIDGVTRSDQGLYTCAASSGLMTKKNSTFVRVH 206
Score = 62.9 bits (152), Expect = 2e-11
Identities = 18/156 (11%), Positives = 42/156 (26%), Gaps = 11/156 (7%)
Query: 71 KPFPISEPSDATVLSGSVVEFVCRV-GGDPLPTILWRRDDGKMPTGRAKILDD--RSLQI 127
T V C + ++ R + + +I D + I
Sbjct: 9 SVSDQHGVVYITENKNKTVVIPCLGSISNLNVSLCARYPEKRFVPDGNRISWDSKKGFTI 68
Query: 128 ENVGPQDEGLYICDVENLVGSISLRASLTVHLLRDDFR---AEPKDTRVASGETALLEC- 183
+ G+ C+ + S + V + + + ++ GE +L C
Sbjct: 69 PSYMISYAGMVFCEAKINDESYQSIMYIVVVVGYRIYDVVLSPSHGIELSVGEKLVLNCT 128
Query: 184 --GPPKGQPEPTLHWKKNGQFIDLESSKSLDLSRRT 217
+W+ + + DL ++
Sbjct: 129 ARTEL--NVGIDFNWEYPSSKHQHKKLVNRDLKTQS 162
Score = 59.8 bits (144), Expect = 3e-10
Identities = 27/193 (13%), Positives = 54/193 (27%), Gaps = 25/193 (12%)
Query: 167 EPKDTRVASGETALLECGPPKGQPEPTLHWKKNGQFIDLESSKSLDLSRRTLGWLRVRPL 226
+T ++ C +L + + + ++ S++
Sbjct: 15 GVVYITENKNKTVVIPCLGSISNLNVSLCARYPEKRFVPDGNRISWDSKKGFTIPSYMIS 74
Query: 227 YWNVARPRANLNPRYIGRKMASLLIWNHPRVN-----------------RLSCFAEGSPL 269
Y + A +N M +++ + + L+C A
Sbjct: 75 YAGMVFCEAKINDESYQSIMYIVVVVGYRIYDVVLSPSHGIELSVGEKLVLNCTARTELN 134
Query: 270 PSVFWT--------QEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVA 321
+ + Q V G TL I GV + D G + C+A S
Sbjct: 135 VGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLSTLTIDGVTRSDQGLYTCAASSGL 194
Query: 322 GSTTVRAFLQVRE 334
+ F++V E
Sbjct: 195 MTKKNSTFVRVHE 207
Score = 45.9 bits (108), Expect = 1e-05
Identities = 26/184 (14%), Positives = 41/184 (22%), Gaps = 51/184 (27%)
Query: 260 LSCFAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALS 319
+ C +V + P + I AG C A
Sbjct: 29 IPCLG-SISNLNVSLCARYPEKRFVPDGNRISWDSKK--GFTIPSYMISYAGMVFCEAKI 85
Query: 320 VAGSTTVRAFLQVREFCVLPK--------------GTFTL-----GQPNL---------- 350
S ++ V + L + N+
Sbjct: 86 NDESYQSIMYIVVVVGYRIYDVVLSPSHGIELSVGEKLVLNCTARTELNVGIDFNWEYPS 145
Query: 351 --------------ATGNSDLRRIACDL-----RETDSGLYTCTASSESGETSWSASLSV 391
S++++ L +D GLYTC ASS S + V
Sbjct: 146 SKHQHKKLVNRDLKTQSGSEMKKFLSTLTIDGVTRSDQGLYTCAASSGLMTKKNSTFVRV 205
Query: 392 EPRP 395
P
Sbjct: 206 HEDP 209
>1wk0_A KIAA0970 protein; fibronectin type III domain, structural genomics,
riken structural genomics/proteomics initiative, RSGI,
unknown function; NMR {Homo sapiens} SCOP: b.1.2.1
Length = 137
Score = 62.3 bits (151), Expect = 7e-12
Identities = 29/101 (28%), Positives = 40/101 (39%), Gaps = 7/101 (6%)
Query: 410 PGPPAAPVILNTTRGSVTLGWGEPEPRGGG------VAPVIGYTVEYFSSDLQTGWVVAA 463
PV + +V L W P G V + GY V SS + G +
Sbjct: 18 LSNIVKPVASDIQARTVVLTWSPPSSLINGETDESSVPELYGYEVLI-SSTGKDGKYKSV 76
Query: 464 HRITSTSITVSDLKPDTSYMFIVRAENSHGLGIPSPVSPIT 504
+ T+IT++DLKP Y V+AE + G PS T
Sbjct: 77 YVGEETNITLNDLKPAMDYHAKVQAEYNSIKGTPSEAEIFT 117
>2dkm_A Collagen alpha-1(XX) chain; FN3 domain, KIAA1510, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 104
Score = 61.0 bits (148), Expect = 1e-11
Identities = 17/99 (17%), Positives = 29/99 (29%), Gaps = 7/99 (7%)
Query: 410 PGPPAAPVILNTTRGSVTLGWGEPEPRGGGVAPVIGYTVEYFSSDLQTGWVVAAHRITST 469
PP A + T +V L W A Y V + + ++
Sbjct: 9 LPPPRALTLAAVTPRTVHLTWQPS-------AGATHYLVRCSPASPKGEEEEREVQVGRP 61
Query: 470 SITVSDLKPDTSYMFIVRAENSHGLGIPSPVSPITRTLG 508
+ + L+P Y V++ + T T G
Sbjct: 62 EVLLDGLEPGRDYEVSVQSLRGPEGSEARGIRARTPTSG 100
Score = 27.9 bits (62), Expect = 3.5
Identities = 8/55 (14%), Positives = 11/55 (20%), Gaps = 17/55 (30%)
Query: 581 STAVRITWEKYNMAT-----------------VMNAATTTSYTVTHLRKFTKYEF 618
V +TW+ AT + L YE
Sbjct: 22 PRTVHLTWQPSAGATHYLVRCSPASPKGEEEEREVQVGRPEVLLDGLEPGRDYEV 76
>1gxe_A Myosin binding protein C, cardiac-type; cytoskeleton, muscle, IGI,
thick filament, immunoglobulin domain; NMR {Homo
sapiens} SCOP: b.1.1.4
Length = 139
Score = 62.1 bits (150), Expect = 1e-11
Identities = 23/119 (19%), Positives = 42/119 (35%), Gaps = 33/119 (27%)
Query: 72 PFPISEPSDATVLSGSVVEFVCRVGGDPLPTILWRRDDGKM------------------- 112
P P V++G+ + + GDP PT++W++ +
Sbjct: 19 DCPGRIPDTIVVVAGNKLRLDVPISGDPAPTVIWQKAITQGNKAPARPAPDAPEDTGDSD 78
Query: 113 -----------PTGRAKIL---DDRSLQIENVGPQDEGLYICDVENLVGSISLRASLTV 157
GR ++ D +E +DEG+Y V+N VG + ++ V
Sbjct: 79 EWVFDKKLLCETEGRVRVETTKDRSIFTVEGAEKEDEGVYTVTVKNPVGEDQVNLTVKV 137
Score = 46.7 bits (110), Expect = 2e-06
Identities = 18/101 (17%), Positives = 30/101 (29%), Gaps = 27/101 (26%)
Query: 259 RLSCFAEGSPLPSVFWTQEGSQVL------------------------MFPGNAYGHLHV 294
RL G P P+V W + +Q G + V
Sbjct: 37 RLDVPISGDPAPTVIWQKAITQGNKAPARPAPDAPEDTGDSDEWVFDKKLLCETEGRVRV 96
Query: 295 TQEG---TLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQV 332
++G +KED G + + + G V ++V
Sbjct: 97 ETTKDRSIFTVEGAEKEDEGVYTVTVKNPVGEDQVNLTVKV 137
>3qwq_B Adnectin; cell surface receptor, tyrosine kinase, glycoprotein,
adnect antitumor, drug, engineered binding protein; HET:
NAG BMA MAN FUC; 2.75A {Homo sapiens} PDB: 3qwr_D*
Length = 114
Score = 60.7 bits (147), Expect = 1e-11
Identities = 17/101 (16%), Positives = 29/101 (28%), Gaps = 6/101 (5%)
Query: 410 PGPPAAPVILNTTRGSVTLGWGEPEPRGGGVAPVIGYTVEYFSSDLQTGWVVAAHRITST 469
P ++ T S+ + W Y + Y + +
Sbjct: 4 SDVPRDLEVVAATPTSLLISWDSGR------GSYQYYRITYGETGGNSPVQEFTVPGPVH 57
Query: 470 SITVSDLKPDTSYMFIVRAENSHGLGIPSPVSPITRTLGLN 510
+ T+S LKP Y V A H P + + +N
Sbjct: 58 TATISGLKPGVDYTITVYAVTDHKPHADGPHTYHESPISIN 98
>1pd6_A Cardiac MYBP-C;, myosin-binding protein C, cardiac-type, domain C2;
IG domain, structural protein; NMR {Homo sapiens} SCOP:
b.1.1.4
Length = 104
Score = 60.1 bits (146), Expect = 2e-11
Identities = 15/90 (16%), Positives = 24/90 (26%), Gaps = 10/90 (11%)
Query: 73 FPISEPSDATVLSGSVVEFVCRVGGDPLPTILWRRDDG--KMPTGRAKILDD---RSLQI 127
F V G + + + W ++ +M + R+L I
Sbjct: 18 FQKKLEPAYQVSKGHKIRLTVELAD-HDAEVKWLKNGQEIQMSGSKYIFESIGAKRTLTI 76
Query: 128 ENVGPQDEGLYICDVENLVGSISLRASLTV 157
D+ Y C V S L V
Sbjct: 77 SQCSLADDAAYQCVVGGEKCS----TELFV 102
Score = 45.1 bits (107), Expect = 3e-06
Identities = 19/79 (24%), Positives = 25/79 (31%), Gaps = 12/79 (15%)
Query: 259 RLSCFAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEG---TLRIQGVQKEDAGFFVC 315
RL+ V W + G Q + G+ Y G TL I D + C
Sbjct: 35 RLTVELAD-HDAEVKWLKNG-QEIQMSGSKY---IFESIGAKRTLTISQCSLADDAAYQC 89
Query: 316 SALSVAGSTTVRAFLQVRE 334
V G L V+E
Sbjct: 90 ----VVGGEKCSTELFVKE 104
Score = 35.4 bits (82), Expect = 0.009
Identities = 11/46 (23%), Positives = 17/46 (36%), Gaps = 2/46 (4%)
Query: 164 FRAEPKDTRVASGETALLECGPPKGQPEPTLHWKKNGQFIDLESSK 209
+ +V+ G L + + W KNGQ I + SK
Sbjct: 19 QKKLEPAYQVSKGHKIRLTVEL--ADHDAEVKWLKNGQEIQMSGSK 62
Score = 32.7 bits (75), Expect = 0.083
Identities = 7/30 (23%), Positives = 8/30 (26%), Gaps = 4/30 (13%)
Query: 363 DLRETDSGLYTCTASSESGETSWSASLSVE 392
D Y C G S L V+
Sbjct: 78 QCSLADDAAYQCVV----GGEKCSTELFVK 103
>1wwb_X Protein (brain derived neurotrophic factor receptor TRKB); TRK
receptor, receptor tyrosine kinase, 3D-domain swapping,
transferase; 2.10A {Homo sapiens} SCOP: b.1.1.4 PDB:
1hcf_X
Length = 103
Score = 59.8 bits (145), Expect = 2e-11
Identities = 17/96 (17%), Positives = 28/96 (29%), Gaps = 13/96 (13%)
Query: 73 FP--ISEPSDATVLSGSVVEFVCRVGGDPLPTILWRRDDGKM-PTGRAKILDDR------ 123
F I+ T S V G+P P + W + + +
Sbjct: 3 FAPTITFLESPT--SDHHWCIPFTVKGNPKPALQWFYNGAILNESKYICTKIHVTNHTEY 60
Query: 124 --SLQIENVGPQDEGLYICDVENLVGSISLRASLTV 157
LQ++N + G Y +N G + S
Sbjct: 61 HGCLQLDNPTHMNNGDYTLIAKNEYGKDEKQISAHF 96
Score = 54.4 bits (131), Expect = 2e-09
Identities = 11/79 (13%), Positives = 25/79 (31%), Gaps = 3/79 (3%)
Query: 259 RLSCFAEGSPLPSVFWTQEGSQVLM---FPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVC 315
+ +G+P P++ W G+ + + H G L++ + G +
Sbjct: 20 CIPFTVKGNPKPALQWFYNGAILNESKYICTKIHVTNHTEYHGCLQLDNPTHMNNGDYTL 79
Query: 316 SALSVAGSTTVRAFLQVRE 334
A + G +
Sbjct: 80 IAKNEYGKDEKQISAHFMG 98
Score = 44.3 bits (105), Expect = 6e-06
Identities = 9/34 (26%), Positives = 14/34 (41%)
Query: 363 DLRETDSGLYTCTASSESGETSWSASLSVEPRPG 396
+ ++G YT A +E G+ S PG
Sbjct: 68 NPTHMNNGDYTLIAKNEYGKDEKQISAHFMGWPG 101
Score = 32.0 bits (73), Expect = 0.13
Identities = 9/32 (28%), Positives = 13/32 (40%), Gaps = 1/32 (3%)
Query: 173 VASGETALLECGPPKGQPEPTLHWKKNGQFID 204
S + KG P+P L W NG ++
Sbjct: 13 PTSDHHWCIPF-TVKGNPKPALQWFYNGAILN 43
>2dlh_A Receptor-type tyrosine-protein phosphatase delta; protein-tyrosine
phosphatase delta, R-PTP-delta, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 121
Score = 60.5 bits (147), Expect = 2e-11
Identities = 22/95 (23%), Positives = 32/95 (33%), Gaps = 4/95 (4%)
Query: 411 GPPAAPVILNTTRGSVTLGWGEPEPRGGGVAPVIGYTVEYFSSDLQTGWVVAAHRITS-T 469
P + ++ + W EPE G + GY V Y Q H +
Sbjct: 20 SAPRDVQARMLSSTTILVQWKEPEEPNG---QIQGYRVYYTMDPTQHVNNWMKHNVADSQ 76
Query: 470 SITVSDLKPDTSYMFIVRAENSHGLGIPSPVSPIT 504
T+ +L P +Y V A S G G S +
Sbjct: 77 ITTIGNLVPQKTYSVKVLAFTSIGDGPLSSDIQVI 111
Score = 28.1 bits (63), Expect = 4.2
Identities = 9/66 (13%), Positives = 17/66 (25%), Gaps = 22/66 (33%)
Query: 575 ELIPTASTAVRITWE----------------------KYNMATVMNAATTTSYTVTHLRK 612
+ +ST + + W+ N N A + T+ +L
Sbjct: 26 QARMLSSTTILVQWKEPEEPNGQIQGYRVYYTMDPTQHVNNWMKHNVADSQITTIGNLVP 85
Query: 613 FTKYEF 618
Y
Sbjct: 86 QKTYSV 91
>2dtg_E Insulin receptor; IR ectodomain, X-RAY crystallography, hormone
receptor/immune system complex; 3.80A {Homo sapiens}
SCOP: b.1.2.1 b.1.2.1 b.1.2.1 c.10.2.5 c.10.2.5 g.3.9.1
PDB: 3loh_E
Length = 897
Score = 65.7 bits (159), Expect = 3e-11
Identities = 26/143 (18%), Positives = 39/143 (27%), Gaps = 18/143 (12%)
Query: 374 CTASSESGETSWSASLSVEPRPGPHAVHRMPDSGLFPGPPAAPVILNTTRGSVTLGWGEP 433
C + S +A +S P A V L W EP
Sbjct: 767 CNQDTPEERCSVAAYVSARTMPEAKA----------DDIVGPVTHEIFENNVVHLMWQEP 816
Query: 434 EPRGGGVAPVIGYTVEYF--SSDLQTGWVVAAHRITSTSITVSDLKPDTSYMFIVRAENS 491
+ G ++ Y V Y + H + L P +Y +RA +
Sbjct: 817 KEPNG---LIVLYEVSYRRYGDEELHLCDTRKHFALERGCRLRGLSP-GNYSVRIRATSL 872
Query: 492 HGLGIPSPVSPITRTLGLNSLVP 514
G G + P + VP
Sbjct: 873 AGNGSWTE--PTYFYVTDYLDVP 893
Score = 65.7 bits (159), Expect = 3e-11
Identities = 31/260 (11%), Positives = 55/260 (21%), Gaps = 53/260 (20%)
Query: 372 YTCTASSESGETSWSASLSVEPRPGPHAVHRMPDSGLFPGPPAAPVILNTTRGSVTLGWG 431
+ + S + V+ P P P+ ++ + + L W
Sbjct: 569 LVTFSDERRTYGAKSDIIYVQTDATN------------PSVPLDPISVSNSSSQIILKWK 616
Query: 432 EPEPRGGGVAPVIGYTVEYFSSDLQTGWVVAAHRITSTSITVSDLKPDTSYMFIVRAENS 491
P G + Y V + + P ++ +E+S
Sbjct: 617 PPSDPNG---NITHYLVFWERQAEDSEL------FELDYCLKGLKLPSRTWSPPFESEDS 667
Query: 492 HGLGIPSPVSPITRTLGLNSLVPQHLLDEARARLGTKVVNLRELIPTASTAVRITWEVSW 551
Q L ++ R T+E
Sbjct: 668 QKHNQSEYEDSAGECCSCPKTDSQILK------------------ELEESSFRKTFEDYL 709
Query: 552 GSVPQHLLDEARARLGTKVVNLRELIPTASTAVRITWEKYNMATVMNAATTTSYTVTHLR 611
+V + R V N S ++ LR
Sbjct: 710 HNVVFVPRPSRKRRSLGDVGN--------------AGNNEEHRPFEKVVNKESLVISGLR 755
Query: 612 KFTKYEFFLVPFFKTVEGAR 631
FT Y L + R
Sbjct: 756 HFTGYRIELQACNQDTPEER 775
Score = 51.5 bits (122), Expect = 6e-07
Identities = 23/177 (12%), Positives = 48/177 (27%), Gaps = 45/177 (25%)
Query: 399 AVHRMPDSGLFPGPPAAPVILNTTRGSVTLGWGEPEPRGGGVAPVIGYTVEYFSSDLQT- 457
A+ D + T+ + L W P ++G+ + Y + Q
Sbjct: 458 ALKTNGDQASCENELLKFSYIRTSFDKILLRWEPYWPPDFR--DLLGFMLFYKEAPYQNV 515
Query: 458 ------------GWVVA----------AHRITSTSITVSDLKPDTSYMFIVRAENSHGLG 495
W V + LKP T Y V+ +
Sbjct: 516 TEFDGQDACGSNSWTVVDIDPPLRSNDPKSQNHPGWLMRGLKPWTQYAIFVKTLVTFSDE 575
Query: 496 IPS--PVSPIT--RTLGLNSLVPQHLLDEARARLGTKVVNLRELIPTASTAVRITWE 548
+ S I +T ++ P + ++ + +S+ + + W+
Sbjct: 576 RRTYGAKSDIIYVQT---DATNP------------SVPLDPI-SVSNSSSQIILKWK 616
Score = 48.8 bits (115), Expect = 5e-06
Identities = 30/212 (14%), Positives = 58/212 (27%), Gaps = 27/212 (12%)
Query: 347 QPNLATGNSDLRRIACDLRETDSGLY---TCTASSESGETSWSASLSVEPRPGPHAVHRM 403
PN GN + + + DS L+ C + +WS E +
Sbjct: 620 DPN---GNITHYLVFWERQAEDSELFELDYCLKGLKLPSRTWSPPFESEDSQKHNQSEYE 676
Query: 404 PDSGLFPGPPAAP--VILNTTRGSVTLGWGEPEPR---GGGVAPVIGYTVEYFSSDLQTG 458
+G P ++ S + + + + ++
Sbjct: 677 DSAGECCSCPKTDSQILKELEESSFRKTFEDYLHNVVFVPRPSRKRRSLGDVGNAGNNEE 736
Query: 459 WVVAAHRITSTSITVSDLKPDTSYMFIVRAENSHGLGIPSPVSPIT--RTLGLNSLVPQH 516
+ S+ +S L+ T Y ++A N V+ RT
Sbjct: 737 HRPFEKVVNKESLVISGLRHFTGYRIELQACNQDTPEERCSVAAYVSART---------- 786
Query: 517 LLDEARARLGTKVVNLRELIPTASTAVRITWE 548
+ EA+A V + V + W+
Sbjct: 787 -MPEAKADDIVGPVT---HEIFENNVVHLMWQ 814
Score = 29.5 bits (65), Expect = 4.8
Identities = 4/26 (15%), Positives = 11/26 (42%)
Query: 595 TVMNAATTTSYTVTHLRKFTKYEFFL 620
+ + + L+ +T+Y F+
Sbjct: 541 NDPKSQNHPGWLMRGLKPWTQYAIFV 566
>2cuh_A Tenascin-X; fibronectin type III domain, extracellular matrix,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
b.1.2.1
Length = 115
Score = 59.4 bits (144), Expect = 4e-11
Identities = 21/95 (22%), Positives = 31/95 (32%), Gaps = 8/95 (8%)
Query: 410 PGPPAAPVILNTTRGSVTLGWGEPEPRGGGVAPVIGYTVEYFSSDLQTGWVVAAHRITST 469
P P LN T G L W P PV Y ++ + ++
Sbjct: 8 PDGPTQLRALNLTEGFAVLHWKPP------QNPVDTYDIQVTAPGAPPLQAETPG--SAV 59
Query: 470 SITVSDLKPDTSYMFIVRAENSHGLGIPSPVSPIT 504
+ DL T+Y VR L P+ ++ T
Sbjct: 60 DYPLHDLVLHTNYTATVRGLRGPNLTSPASITFTT 94
>3eow_R Poliovirus receptor; immunoglobulin super family, alternative
splicing, cell adhesion, cell membrane, glycoprotein,
HOST-virus interaction; 3.50A {Homo sapiens} PDB: 3uro_R
3epc_R* 3epd_R* 3epf_R*
Length = 221
Score = 61.2 bits (148), Expect = 1e-10
Identities = 30/168 (17%), Positives = 51/168 (30%), Gaps = 29/168 (17%)
Query: 78 PSDATVLSGSVVEFVCRVGGDPLPT-----ILWRRDDGK--------------MPTGRAK 118
P+ G V C + + + W R + R +
Sbjct: 6 PTQVPGFLGDSVTLPCYLQVPNMEVTHVSQLTWARHGESGSMAVFHQTQGPSYSESKRLE 65
Query: 119 ILDDR--------SLQIENVGPQDEGLYICDVENL-VGSISLRASLTVHLLRDDFRAEPK 169
+ R SL++ + +DEG Y C GS S+ L V L + AE +
Sbjct: 66 FVAARLGAELRDASLRMFGLRVEDEGSYTCLFVTFPQGSRSVDIWLRV-LAKPQNTAEVQ 124
Query: 170 DTRVASGETALLECGPPKGQPEPTLHWKKNGQFIDLESSKSLDLSRRT 217
++ + C G+P + W + + S LS
Sbjct: 125 KVQLTGEPVPMARCVSTGGRPPAQITWHSDLGGMPQTSQVPGFLSGTV 172
Score = 43.5 bits (102), Expect = 8e-05
Identities = 28/100 (28%), Positives = 33/100 (33%), Gaps = 10/100 (10%)
Query: 69 LIKPFPISEPSDATVLSGSVVEFVCRV-GGDPLPTILWRRDDGKMPTGRAKILDD----- 122
L KP +E + V C GG P I W D G MP
Sbjct: 114 LAKPQNTAEVQKVQLTGEPVPMARCVSTGGRPPAQITWHSDLGGMPQTSQVPGFLSGTVT 173
Query: 123 -RSLQIENVGPQDEG-LYICDVEN--LVGSISLRASLTVH 158
SL I Q +G C VE+ L SLTV+
Sbjct: 174 VTSLWILVPSSQVDGKQVTCKVEHESFEKPQLLTVSLTVY 213
Score = 32.7 bits (74), Expect = 0.22
Identities = 31/208 (14%), Positives = 58/208 (27%), Gaps = 71/208 (34%)
Query: 260 LSCFAEGSPLP-----SVFWTQEGSQVLMFPGNAYGHLHVTQ----------------EG 298
L C+ + + + W + G M + ++ +
Sbjct: 19 LPCYLQVPNMEVTHVSQLTWARHGESGSMAVFHQTQGPSYSESKRLEFVAARLGAELRDA 78
Query: 299 TLRIQGVQKEDAGFFVCSALSV-AGSTTVRAFLQVREFCVLPKGTFTLGQPNLATGNSDL 357
+LR+ G++ ED G + C ++ GS +V +L+V P+ T + + L +
Sbjct: 79 SLRMFGLRVEDEGSYTCLFVTFPQGSRSVDIWLRVL---AKPQNTAEVQKVQLTGE--PV 133
Query: 358 RRIAC-------------------------------------------DLRETDSGLYTC 374
C + D TC
Sbjct: 134 PMARCVSTGGRPPAQITWHSDLGGMPQTSQVPGFLSGTVTVTSLWILVPSSQVDGKQVTC 193
Query: 375 TASSESGETSWSASLSVEPRPGPHAVHR 402
ES E ++S+ PH H
Sbjct: 194 KVEHESFEKPQLLTVSLTVYY-PHHHHH 220
>3mpc_A FN3-like protein; fibronectin, FN(III), unknown function; 1.60A
{Clostridium thermocellum}
Length = 103
Score = 57.8 bits (140), Expect = 1e-10
Identities = 20/97 (20%), Positives = 37/97 (38%), Gaps = 12/97 (12%)
Query: 412 PPAAP----VILNTTRGSVTLGWGEPEPRGGGVAPVIGYTVEYFSSDLQTGWVVAAHRIT 467
PA P +L+++ + L W Y V S+ + A IT
Sbjct: 4 APAFPTGLSAVLDSSGNTANLTWN-------AAPGANSYNV-KRSTKSGGPYTTIATNIT 55
Query: 468 STSITVSDLKPDTSYMFIVRAENSHGLGIPSPVSPIT 504
ST+ T + + T Y ++V A ++ + S + +
Sbjct: 56 STNYTDTGVATGTKYYYVVSAVSNGVETLNSAEAILQ 92
Score = 27.0 bits (60), Expect = 6.5
Identities = 13/43 (30%), Positives = 19/43 (44%), Gaps = 8/43 (18%)
Query: 367 TDSGL-------YTCTASSESGETSWSASLSVE-PRPGPHAVH 401
TD+G+ Y +A S ET SA ++ P+ H H
Sbjct: 60 TDTGVATGTKYYYVVSAVSNGVETLNSAEAILQYPKLEHHHHH 102
Score = 27.0 bits (60), Expect = 7.2
Identities = 14/63 (22%), Positives = 24/63 (38%), Gaps = 16/63 (25%)
Query: 572 NLRELIPTASTAVRITWEK------YN----------MATVMNAATTTSYTVTHLRKFTK 615
L ++ ++ +TW YN T+ T+T+YT T + TK
Sbjct: 10 GLSAVLDSSGNTANLTWNAAPGANSYNVKRSTKSGGPYTTIATNITSTNYTDTGVATGTK 69
Query: 616 YEF 618
Y +
Sbjct: 70 YYY 72
>1bqu_A Protein (GP130); cytokine receptor, glycoprotein 130, interleukine
6 R beta subunit, signaling protein; 2.00A {Homo
sapiens} SCOP: b.1.2.1 b.1.2.1 PDB: 1pvh_A 1bj8_A
Length = 215
Score = 60.8 bits (147), Expect = 1e-10
Identities = 27/97 (27%), Positives = 41/97 (42%), Gaps = 7/97 (7%)
Query: 410 PGPPAAPVILNT--TRGSVTLGWGEPEPRGGGVAPVIGYTVEYFSSDLQTGWVVAAHRI- 466
P PP ++N+ + L W P + ++ Y ++Y + D T +
Sbjct: 104 PNPPHNLSVINSEELSSILKLTWTNPSIKSV---IILKYNIQYRTKDASTWSQIPPEDTA 160
Query: 467 -TSTSITVSDLKPDTSYMFIVRAENSHGLGIPSPVSP 502
T +S TV DLKP T Y+F +R G G S S
Sbjct: 161 STRSSFTVQDLKPFTEYVFRIRCMKEDGKGYWSDWSE 197
Score = 41.5 bits (97), Expect = 3e-04
Identities = 38/211 (18%), Positives = 63/211 (29%), Gaps = 42/211 (19%)
Query: 412 PPAAPVILN---TTRGSVTLGWGEPEPRGGGVAPVIGYTVEYFSSDLQTGWVVAAHRITS 468
PP P L+ + W + +T++ + A R T
Sbjct: 7 PPEKPKNLSCIVNEGKKMRCEW-DGGRETH---LETNFTLKSEWAT-HKFADCKAKRDTP 61
Query: 469 TSITV-SDLKPDTSYMFIVRAENSHGLGIPSPVSPITRTLGLNSLVPQHLLDEARARLGT 527
TS TV + V AEN+ G ++ + P +L
Sbjct: 62 TSCTVDYSTVYFVNIEVWVEAENALGKVTSDHIN-FDPVYKVKPNPPHNL---------- 110
Query: 528 KVVNLRELIPTASTAVRITWEVSWGSVPQHLLDEARARLGTKVVNLRELIPTASTAVRIT 587
V+N S+ +++TW L + R T
Sbjct: 111 SVIN----SEELSSILKLTWTNPSIKSVIILKYNIQYRTKDAS----------------T 150
Query: 588 WEKYNMATVMNAATTTSYTVTHLRKFTKYEF 618
W + + T +S+TV L+ FT+Y F
Sbjct: 151 WSQIPPEDTAS--TRSSFTVQDLKPFTEYVF 179
>3rbg_A Cytotoxic and regulatory T-cell molecule; IGV, crtam, structural
genomics, PSI-biology, NEW YORK struc genomics research
consortium, nysgrc; 2.30A {Homo sapiens}
Length = 124
Score = 58.5 bits (141), Expect = 1e-10
Identities = 17/96 (17%), Positives = 31/96 (32%), Gaps = 14/96 (14%)
Query: 75 ISEPSDATVLSGSVVEFVCRVGGDPLPTILWRRDDGKMPT---------GRAKIL----D 121
+ TV G + C ++ W G + ++L +
Sbjct: 5 TNHTETITVEEGQTLTLKCVTSLRKNSSLQWLTPSGFTIFLNEYPVLKNSKYQLLHHSAN 64
Query: 122 DRSLQIENVGPQDEGLYICDVENLVGSISLRASLTV 157
S+ + NV QDEG+Y C + + + V
Sbjct: 65 QLSITVPNVTLQDEGVYKCLHYSD-SVSTKEVKVIV 99
Score = 48.8 bits (116), Expect = 3e-07
Identities = 15/99 (15%), Positives = 26/99 (26%), Gaps = 11/99 (11%)
Query: 259 RLSCFAEGSPLPSVFWTQEGSQVLMFPGNAYGH-------LHVTQEGTLRIQGVQKEDAG 311
L C S+ W + H + ++ + V +D G
Sbjct: 20 TLKCVTSLRKNSSLQWLTPSGFTIFLNEYPVLKNSKYQLLHHSANQLSITVPNVTLQDEG 79
Query: 312 FFVCSALSVAGSTTVRAFLQVREFCVLPKGTFTLGQPNL 350
+ C S +T + V KG F +
Sbjct: 80 VYKCLHYS-DSVSTKEVKVIVL---ATMKGEFCRYPSHW 114
Score = 30.7 bits (69), Expect = 0.49
Identities = 8/33 (24%), Positives = 13/33 (39%), Gaps = 1/33 (3%)
Query: 363 DLRETDSGLYTCTASSESGETSWSASLSVEPRP 395
++ D G+Y C S+S T + V
Sbjct: 72 NVTLQDEGVYKCLHYSDSVSTK-EVKVIVLATM 103
Score = 30.3 bits (68), Expect = 0.64
Identities = 12/53 (22%), Positives = 19/53 (35%), Gaps = 2/53 (3%)
Query: 164 FRAEPKDTRVASGETALLECGPPKGQPEPTLHW-KKNGQFIDLESSKSLDLSR 215
+ V G+T L+C + +L W +G I L L S+
Sbjct: 4 LTNHTETITVEEGQTLTLKC-VTSLRKNSSLQWLTPSGFTIFLNEYPVLKNSK 55
>3sbw_C Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-H1, programmed
death-1 ligand 1, complex, costimulatory, immune system;
2.28A {Homo sapiens} PDB: 3fn3_A 3bis_A 3bik_A
Length = 222
Score = 60.4 bits (146), Expect = 2e-10
Identities = 30/156 (19%), Positives = 55/156 (35%), Gaps = 31/156 (19%)
Query: 73 FPISEPSDA-TVLSGSVVEFVCRVGGDPLP-----TILWRRDDGKMPT------------ 114
F ++ P D V GS + C+ + + W +D +
Sbjct: 2 FTVTVPKDLYVVEYGSNMTIECKFPVEKQLDLAALIVYWEMEDKNIIQFVHGEEDLKVQH 61
Query: 115 ----GRAKILDDR------SLQIENVGPQDEGLYICDVENLVGSISLRASLTVHLLRDDF 164
RA++L D+ +LQI +V QD G+Y C + G+ R ++ V+ +
Sbjct: 62 SSYRQRARLLKDQLSLGNAALQITDVKLQDAGVYRCMISYG-GADYKRITVKVN-APYNK 119
Query: 165 RAEPKDTRVASGETALLECGPPKGQPEPTLHWKKNG 200
+ L C +G P+ + W +
Sbjct: 120 INQRILVVDPVTSEHELTCQ-AEGYPKAEVIWTSSD 154
Score = 58.5 bits (141), Expect = 8e-10
Identities = 15/99 (15%), Positives = 29/99 (29%), Gaps = 7/99 (7%)
Query: 67 EALIKPFPISEPSDATVLSGSVVEFVCRVGGDPLPTILWRRDDGK-MPTGRAKILDDRSL 125
+ I++ S E C+ G P ++W D + + R
Sbjct: 112 KVNAPYNKINQRILVVDPVTSEHELTCQAEGYPKAEVIWTSSDHQVLSGKTTTTNSKREE 171
Query: 126 QIENVG------PQDEGLYICDVENLVGSISLRASLTVH 158
++ NV ++ C L + A L +
Sbjct: 172 KLFNVTSTLRINTTTNEIFYCTFRRLDPEENHTAELVIP 210
Score = 51.9 bits (124), Expect = 1e-07
Identities = 39/219 (17%), Positives = 56/219 (25%), Gaps = 64/219 (29%)
Query: 168 PKDTRVAS-GETALLEC----GPPKGQPEPTLHWKKNGQFIDLESSKSLDLSRRTLGWLR 222
PKD V G +EC ++W+ + I DL
Sbjct: 7 PKDLYVVEYGSNMTIECKFPVEKQLDLAALIVYWEMEDKNIIQFVHGEEDLKV------- 59
Query: 223 VRPLYWNVARPRANLNPRYIGRKMASLLIWN----------------------------- 253
Y R RA L + A+L I +
Sbjct: 60 QHSSY----RQRARLLKDQLSLGNAALQITDVKLQDAGVYRCMISYGGADYKRITVKVNA 115
Query: 254 -----HPRVN---------RLSCFAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGT 299
+ R+ L+C AEG P V WT QVL G +E
Sbjct: 116 PYNKINQRILVVDPVTSEHELTCQAEGYPKAEVIWTSSDHQVL--SGKTTTTNSKREEKL 173
Query: 300 LRIQG---VQKEDAGFFVCSALSVAGSTTVRAFLQVREF 335
+ + F C+ + A L + E
Sbjct: 174 FNVTSTLRINTTTNEIFYCTFRRLDPEENHTAELVIPEL 212
Score = 46.9 bits (111), Expect = 6e-06
Identities = 26/197 (13%), Positives = 46/197 (23%), Gaps = 59/197 (29%)
Query: 260 LSCFAEGSPLPS-----VFWTQEGSQVLMFPGNAYGHLHVTQE----------------G 298
+ C V+W E ++ F
Sbjct: 21 IECKFPVEKQLDLAALIVYWEMEDKNIIQFVHGEEDLKVQHSSYRQRARLLKDQLSLGNA 80
Query: 299 TLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVREFCVLPK----------GTFTL--- 345
L+I V+ +DAG + C S G+ R ++V L
Sbjct: 81 ALQITDVKLQDAGVYRCMI-SYGGADYKRITVKVNAPYNKINQRILVVDPVTSEHELTCQ 139
Query: 346 ---------------GQPNLATGNSDLRR---------IACDLRETDSGLYTCTASSESG 381
Q + + + T + ++ CT
Sbjct: 140 AEGYPKAEVIWTSSDHQVLSGKTTTTNSKREEKLFNVTSTLRINTTTNEIFYCTFRRLDP 199
Query: 382 ETSWSASLSVEPRPGPH 398
E + +A L + P H
Sbjct: 200 EENHTAELVIPELPLAH 216
>1ujt_A KIAA1568 protein; fibronectin type III domain, structural genomics,
riken structural genomics/proteomics initiative, RSGI,
unknown function; NMR {Homo sapiens} SCOP: b.1.2.1
Length = 120
Score = 57.6 bits (139), Expect = 2e-10
Identities = 22/114 (19%), Positives = 40/114 (35%), Gaps = 17/114 (14%)
Query: 518 LDEARARLGTKVVNLRELIPTASTAVRITWEVSWGSVPQHLLDEARARLGTKVVNLRELI 577
+ + LG +V L + T V++TW V + G +V
Sbjct: 7 GRQVQKELGDVLVRLHNPVVLTPTTVQVTWTVD---RQPQFIQ------GYRV----MYR 53
Query: 578 PTASTAVRITWEKYNMATVMNAATTTSYTVTHLRKFTKYEFFLVPFFKTVEGAR 631
T+ +W+ + T S + +L+K YE + P+F +G
Sbjct: 54 QTSGLQATSSWQNLDAKV----PTERSAVLVNLKKGVTYEIKVRPYFNEFQGMD 103
Score = 54.9 bits (132), Expect = 2e-09
Identities = 24/96 (25%), Positives = 35/96 (36%), Gaps = 11/96 (11%)
Query: 416 PVILNTTRGSVTLGWGEPEPRGGGVAPVIGYTVEYFSSDLQTG---W-VVAAHRITSTSI 471
PV+L T +V + W + GY V Y + W + A T S
Sbjct: 24 PVVLTPT--TVQVTWTVDRQPQ----FIQGYRVMYRQTSGLQATSSWQNLDAKVPTERSA 77
Query: 472 TVSDLKPDTSYMFIVRAENSHGLGIPSPVSPITRTL 507
+ +LK +Y VR + G+ S S RT
Sbjct: 78 VLVNLKKGVTYEIKVRPYFNEFQGMDSE-SKTVRTT 112
>3n1f_C Cell adhesion molecule-related/DOWN-regulated BY; binding sites,
calcium, cell adhesion molecules, cell cycle cell LINE,
conserved sequence; 1.60A {Homo sapiens} PDB: 3d1m_C
3n1q_C 3n1m_C 3n1g_C 3n1p_C
Length = 102
Score = 57.0 bits (138), Expect = 2e-10
Identities = 22/94 (23%), Positives = 34/94 (36%), Gaps = 6/94 (6%)
Query: 412 PPAAPVILNTTRGS---VTLGWGEPEPRGGGVAPVIGYTVEY--FSSDLQTGWVVAAHRI 466
P P I T S + L W P P+ G+ + Y SD + +
Sbjct: 4 PITGPHIAYTEAVSDTQIMLKW-TYIPSSNNNTPIQGFYIYYRPTDSDNDSDYKRDVVEG 62
Query: 467 TSTSITVSDLKPDTSYMFIVRAENSHGLGIPSPV 500
+ + L+P+TSY ++ N G S V
Sbjct: 63 SKQWHMIGHLQPETSYDIKMQCFNEGGESEFSNV 96
Score = 30.4 bits (69), Expect = 0.52
Identities = 9/73 (12%), Positives = 18/73 (24%), Gaps = 29/73 (39%)
Query: 578 PTASTAVRITWEK---------------------------YNMATVMNAATTTSYTVTHL 610
+ T + + W Y V + + + HL
Sbjct: 15 AVSDTQIMLKWTYIPSSNNNTPIQGFYIYYRPTDSDNDSDYKRDVV--EGSKQWHMIGHL 72
Query: 611 RKFTKYEFFLVPF 623
+ T Y+ + F
Sbjct: 73 QPETSYDIKMQCF 85
>1sy6_A T-cell surface glycoprotein CD3 gamma/epsilon chain; CD3 epsilon,
OKT3 FAB, signaling protein/antibiotic complex; 2.10A
{Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 2atp_E*
Length = 204
Score = 59.5 bits (143), Expect = 2e-10
Identities = 22/152 (14%), Positives = 37/152 (24%), Gaps = 35/152 (23%)
Query: 86 GSVVEFVCRVGGDPLPTILWRRDDGKMPTGRAKILDDRSLQIENVGPQDEGLYICDVENL 145
V C I W +D + D + + + G+Y C
Sbjct: 18 DGSVLLTC---DAEAKNITWFKDGKMIGFLTE---DKKKWNLGSNAKDPRGMYQCKGSQN 71
Query: 146 VGS--------ISLRASLTVHLLRDDF-----------------RAEPKDTRVA-SGETA 179
S + +DD +V+ SG T
Sbjct: 72 KSKPLQVYYRMGSADDAKKDAAKKDDAKKDDAKKDGSDGNEEMGGITQTPYKVSISGTTV 131
Query: 180 LLECGPPKGQPEPTLHWKKNGQFIDLESSKSL 211
+L C P + W+ N + I +
Sbjct: 132 ILTC---PQYPGSEILWQHNDKNIGGDEDDKN 160
Score = 55.7 bits (133), Expect = 5e-09
Identities = 16/100 (16%), Positives = 30/100 (30%), Gaps = 8/100 (8%)
Query: 65 AKEALIKPFPISEPSDATV-LSGSVVEFVCRVGGDPLPTILWRRDDGKMPTG---RAKIL 120
+ + V +SG+ V C P ILW+ +D + +
Sbjct: 106 DGSDGNEEMGGITQTPYKVSISGTTVILTCPQ--YPGSEILWQHNDKNIGGDEDDKNIGS 163
Query: 121 DDRSLQIENVGP-QDEGLYICDVENLVGSI-SLRASLTVH 158
D+ L ++ + G Y+C + L
Sbjct: 164 DEDHLSLKEFSELEQSGYYVCYPRGSKPEDANFYLYLRAR 203
Score = 44.1 bits (103), Expect = 4e-05
Identities = 26/198 (13%), Positives = 52/198 (26%), Gaps = 52/198 (26%)
Query: 176 GETALLECGPPKGQPEPTLHWKKNGQFIDLESS--KSLDLSRRTLGWLRVRPLYWNVARP 233
+ LL C + W K+G+ I + K +L R +Y
Sbjct: 18 DGSVLLTCDAE----AKNITWFKDGKMIGFLTEDKKKWNLGSNAKD---PRGMYQCKGSQ 70
Query: 234 RANLNPRYIGR-------KMASLLIWNHPRVNR--------------------------- 259
+ + R K + + + +
Sbjct: 71 NKSKPLQVYYRMGSADDAKKDAAKKDDAKKDDAKKDGSDGNEEMGGITQTPYKVSISGTT 130
Query: 260 --LSCFAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGV-QKEDAGFFVCS 316
L+C P + W + G+ + E L ++ + E +G++VC
Sbjct: 131 VILTCPQY--PGSEILWQHNDKNI---GGDEDDKNIGSDEDHLSLKEFSELEQSGYYVCY 185
Query: 317 ALSVAGS-TTVRAFLQVR 333
+L+ R
Sbjct: 186 PRGSKPEDANFYLYLRAR 203
Score = 35.6 bits (81), Expect = 0.027
Identities = 10/121 (8%), Positives = 27/121 (22%), Gaps = 13/121 (10%)
Query: 260 LSCFAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALS 319
L+C + ++ W ++G + + + + K+ G + C
Sbjct: 23 LTC---DAEAKNITWFKDGKMIGFLTED---------KKKWNLGSNAKDPRGMYQCKGSQ 70
Query: 320 VAGSTTVRAFLQVREFCVLPKGTFTLGQPNLATGNSDLRRIACDLRETDSGLYTCTASSE 379
+ D ++ Y + S
Sbjct: 71 NKSKPLQVYYRMGSADDAKKDAAKKDDAKK-DDAKKDGSDGNEEMGGITQTPYKVSISGT 129
Query: 380 S 380
+
Sbjct: 130 T 130
Score = 30.6 bits (68), Expect = 1.1
Identities = 5/17 (29%), Positives = 6/17 (35%)
Query: 368 DSGLYTCTASSESGETS 384
SG Y C E +
Sbjct: 178 QSGYYVCYPRGSKPEDA 194
Score = 28.3 bits (62), Expect = 5.6
Identities = 13/104 (12%), Positives = 23/104 (22%), Gaps = 14/104 (13%)
Query: 346 GQPNLATGNSDLRRIACDLRETDSGLYTCTASSE------------SGETSWSASLSVEP 393
G+ + + G+Y C S S + + + +
Sbjct: 38 GKMIGFLTEDKKKWNLGSNAKDPRGMYQCKGSQNKSKPLQVYYRMGSADDAKKDAAKKDD 97
Query: 394 RPGPHAVHRMPDSGLFPGPPAAPVILNTTRG-SVTL-GWGEPEP 435
A D G + G +V L P
Sbjct: 98 AKKDDAKKDGSDGNEEMGGITQTPYKVSISGTTVILTCPQYPGS 141
>1i1r_A GP130, interleukin-6 receptor beta chain; cytokine/receptor
complex, GP130; 2.40A {Homo sapiens} SCOP: b.1.2.1
b.1.2.1 b.1.2.1 PDB: 1p9m_A
Length = 303
Score = 60.6 bits (146), Expect = 4e-10
Identities = 27/101 (26%), Positives = 41/101 (40%), Gaps = 7/101 (6%)
Query: 410 PGPPAAPVILNT--TRGSVTLGWGEPEPRGGGVAPVIGYTVEYFSSDLQTGWVVAAHRI- 466
P PP ++N+ + L W P + ++ Y ++Y + D T +
Sbjct: 200 PNPPHNLSVINSEELSSILKLTWTNPSIKSV---IILKYNIQYRTKDASTWSQIPPEDTA 256
Query: 467 -TSTSITVSDLKPDTSYMFIVRAENSHGLGIPSPVSPITRT 506
T +S TV DLKP T Y+F +R G G S S
Sbjct: 257 STRSSFTVQDLKPFTEYVFRIRCMKEDGKGYWSDWSEEASG 297
Score = 43.3 bits (101), Expect = 1e-04
Identities = 34/268 (12%), Positives = 66/268 (24%), Gaps = 55/268 (20%)
Query: 353 GNSDLRRIACDLRETDSGLY-TCTASSESGETSWSASLSVEPRPGPHAVHRMPDSGLFPG 411
+ D+ + L + + + ++ GL P
Sbjct: 61 NRTASSVTFTDIASLNIQLTCNILTFGQLEQNVYGITIIS---------------GLPPE 105
Query: 412 PPAAPVILNTTRGSVTLGWGEPEPRGGGVAPVIGYTVEYFSSDLQTGWVVAAHRITSTSI 471
P + + W +T++ + + A ++
Sbjct: 106 KPKNLSCIVNEGKKMRCEWDGGRETHLE----TNFTLKSEWATHKFADCKAKRDTPTSCT 161
Query: 472 TVSDLKPDTSYMFIVRAENSHGLGIPSPVSPITRTLGLNSLVPQHLLDEARARLGTKVVN 531
+ V AEN+ G V+ V + N
Sbjct: 162 VDYSTVYFVNIEVWVEAENALG-----KVTSDHINFDPVYKVKPN-----------PPHN 205
Query: 532 LR-ELIPTASTAVRITWEVSWGSVPQHLLDEARARLGTKVVNLRELIPTASTAVRITWEK 590
L S+ +++TW L + R TW +
Sbjct: 206 LSVINSEELSSILKLTWTNPSIKSVIILKYNIQYRTKDAS----------------TWSQ 249
Query: 591 YNMATVMNAATTTSYTVTHLRKFTKYEF 618
+ T +S+TV L+ FT+Y F
Sbjct: 250 IPPEDTAS--TRSSFTVQDLKPFTEYVF 275
Score = 34.8 bits (79), Expect = 0.074
Identities = 13/99 (13%), Positives = 29/99 (29%), Gaps = 10/99 (10%)
Query: 69 LIKPFPISEPSDATVLSGSVVEFVCRV-------GGDPLPTILWRRDDGKMPTGRAKILD 121
L+ P P V S VC + I+W+ + +P + I++
Sbjct: 2 LLDPCGYISPESPVVQLHSNFTAVCVLKEKCMDYFHVNANYIVWKTNHFTIPKEQYTIIN 61
Query: 122 DR--SLQIENVGPQDEGLY-ICDVENLVGSISLRASLTV 157
S+ ++ + L + ++
Sbjct: 62 RTASSVTFTDIASLNIQLTCNILTFGQLEQNVYGITIIS 100
Score = 32.1 bits (72), Expect = 0.53
Identities = 14/116 (12%), Positives = 28/116 (24%), Gaps = 7/116 (6%)
Query: 167 EPKDTRVASGETALLEC------GPPKGQPEPTLHWKKNGQFIDLESSKSLDLSRRTLGW 220
P+ V C + WK N I E ++ + ++ +
Sbjct: 10 SPESPVVQLHSNFTAVCVLKEKCMDYFHVNANYIVWKTNHFTIPKEQYTIINRTASSVTF 69
Query: 221 LRVRPLYWNVARPRANLNPRYIGRKMASLLIWNHPRVNR-LSCFAEGSPLPSVFWT 275
+ L + +++ P + LSC W
Sbjct: 70 TDIASLNIQLTCNILTFGQLEQNVYGITIISGLPPEKPKNLSCIVNEGKKMRCEWD 125
>1iar_B Protein (interleukin-4 receptor alpha chain); cytokine
receptor,interleukin-4, cytokine/receptor complex; 2.30A
{Homo sapiens} SCOP: b.1.2.1 b.1.2.1 PDB: 3bpl_B*
3bpn_B* 3bpo_B*
Length = 207
Score = 58.5 bits (141), Expect = 5e-10
Identities = 27/148 (18%), Positives = 44/148 (29%), Gaps = 5/148 (3%)
Query: 362 CDLRETDSGLYTC--TASSESGETSWSASLSVEPRPGPHAVHRMPDSGLFPGPPAAPVIL 419
C C +++ L + + P + P P +
Sbjct: 49 CIPENNGGAGCVCHLLMDDVVSADNYTLDLWAGQQLLWKGSFK-PSEHVKPRAPGNLTVH 107
Query: 420 NTTRGSVTLGWGEPEPRGGGVAPVIGYTVEYFSSDLQTGWVV--AAHRITSTSITVSDLK 477
++ L W P P + + Y V +S + + + + S I S LK
Sbjct: 108 TNVSDTLLLTWSNPYPPDNYLYNHLTYAVNIWSENDPADFRIYNVTYLEPSLRIAASTLK 167
Query: 478 PDTSYMFIVRAENSHGLGIPSPVSPITR 505
SY VRA S SP T+
Sbjct: 168 SGISYRARVRAWAQAYNTTWSEWSPSTK 195
>1dr9_A B7-1 (CD80), T lymphocyte activation antigen; IG superfamily,
immune system; HET: NAG; 3.00A {Homo sapiens} SCOP:
b.1.1.1 b.1.1.3 PDB: 1i8l_A*
Length = 201
Score = 58.5 bits (141), Expect = 6e-10
Identities = 31/144 (21%), Positives = 47/144 (32%), Gaps = 22/144 (15%)
Query: 82 TVLSGSVVEFVCR----VGGDPLPTILWRRDDG-----------KMP--TGRAKIL--DD 122
T V C V I W+++ P R ++
Sbjct: 5 TKEVKEVATLSCGHNVSVEELAQTRIYWQKEKKMVLTMMSGDMNIWPEYKNRTIFDITNN 64
Query: 123 RSLQIENVGPQDEGLYICDVENLVGSISLR---ASLTVHLLRDDFRAEPKDTRVASGETA 179
S+ I + P DEG Y C V R A +T+ + D D + +
Sbjct: 65 LSIVILALRPSDEGTYECVVLKYEKDAFKREHLAEVTLSVKADFPTPSISDFEIPTSNIR 124
Query: 180 LLECGPPKGQPEPTLHWKKNGQFI 203
+ C G PEP L W +NG+ +
Sbjct: 125 RIICSTSGGFPEPHLSWLENGEEL 148
Score = 42.7 bits (100), Expect = 1e-04
Identities = 13/93 (13%), Positives = 32/93 (34%), Gaps = 7/93 (7%)
Query: 71 KPFPISEPSDATVLSGSVVEFVCRV-GGDPLPTILWRRDDGKMPTGRAKILDDRSLQIEN 129
FP SD + + ++ +C GG P P + W + ++ + D ++
Sbjct: 106 ADFPTPSISDFEIPTSNIRRIICSTSGGFPEPHLSWLENGEELNAINTTVSQDPETELYA 165
Query: 130 VG------PQDEGLYICDVENLVGSISLRASLT 156
V ++C ++ ++ +
Sbjct: 166 VSSKLDFNMTTNHSFMCLIKYGHLRVNQTFNWN 198
Score = 35.7 bits (82), Expect = 0.020
Identities = 26/167 (15%), Positives = 42/167 (25%), Gaps = 33/167 (19%)
Query: 260 LSCFAEGSPL----PSVFWTQEGSQVLMFPGNAY-------GHLHVTQEG--TLRIQGVQ 306
LSC S ++W +E VL ++ I ++
Sbjct: 14 LSCGHNVSVEELAQTRIYWQKEKKMVLTMMSGDMNIWPEYKNRTIFDITNNLSIVILALR 73
Query: 307 KEDAGFFVCSALSVAGSTTVRAFLQVREFCVLPKGTFTLGQPNLATGNSDLRRIACDLRE 366
D G + C L R L V ++ R
Sbjct: 74 PSDEGTYECVVLKYEKDAFKREHLAEVTLSVKADFPTPSISDFEIPTSNIRR-------- 125
Query: 367 TDSGLYTCTASSESG----ETSWSASLSVEPRPGPHAVHRMPDSGLF 409
C S+ G SW + E V + P++ L+
Sbjct: 126 -----IIC--STSGGFPEPHLSWLEN-GEELNAINTTVSQDPETELY 164
>1he7_A High affinity nerve growth factor receptor; transferase,
TRK-receptor, strand-swapping; 2.0A {Homo sapiens} SCOP:
b.1.1.4 PDB: 1wwa_X 1www_X
Length = 126
Score = 56.5 bits (136), Expect = 6e-10
Identities = 19/110 (17%), Positives = 35/110 (31%), Gaps = 16/110 (14%)
Query: 93 CRVGGDPLPTILWRRDD-----------GKMPTGRAKILDDRSLQIENVGPQDEGLYICD 141
V G P P++ W + + + + L++ + G Y
Sbjct: 22 FSVDGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETVRHGCLRLNQPTHVNNGNYTLL 81
Query: 142 VENLVGSISLRASLTVHLLRDDFRAEPKDTRVASGETALLECGPPKGQPE 191
N G S AS+ + + F P+D + T P + + E
Sbjct: 82 AANPFGQAS--ASIMAAFMDNPFEFNPEDPIPDTNST---SGDPVEKKDE 126
Score = 46.9 bits (111), Expect = 1e-06
Identities = 13/80 (16%), Positives = 24/80 (30%), Gaps = 5/80 (6%)
Query: 260 LSCFAEGSPLPSVFWTQEGSQVLMFPG-----NAYGHLHVTQEGTLRIQGVQKEDAGFFV 314
+ +G P PS+ W GS + + G LR+ + G +
Sbjct: 20 IPFSVDGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETVRHGCLRLNQPTHVNNGNYT 79
Query: 315 CSALSVAGSTTVRAFLQVRE 334
A + G + +
Sbjct: 80 LLAANPFGQASASIMAAFMD 99
Score = 41.1 bits (96), Expect = 1e-04
Identities = 13/68 (19%), Positives = 20/68 (29%), Gaps = 12/68 (17%)
Query: 365 RETDSGLYTCTASSESGETSWSASLSVEPRPGPHAVHRMPDSGLFPGPPAAPVILNTTRG 424
++G YT A++ G+ S S + P P N+T G
Sbjct: 71 THVNNGNYTLLAANPFGQASASIMAAFMDNPFE------------FNPEDPIPDTNSTSG 118
Query: 425 SVTLGWGE 432
E
Sbjct: 119 DPVEKKDE 126
Score = 34.1 bits (78), Expect = 0.041
Identities = 11/39 (28%), Positives = 17/39 (43%), Gaps = 2/39 (5%)
Query: 168 PKDTRVASGETALLECGPP--KGQPEPTLHWKKNGQFID 204
P ++ + C P GQP P+L W NG ++
Sbjct: 4 PASVQLHTAVEMHHWCIPFSVDGQPAPSLRWLFNGSVLN 42
>1zxq_A ICAM-2, intercellular adhesion molecule-2; immunoglobulin fold,
cell adhesion, glycoprotein, transmembr; HET: NAG; 2.20A
{Homo sapiens} SCOP: b.1.1.3 b.1.1.4
Length = 192
Score = 57.5 bits (138), Expect = 9e-10
Identities = 25/183 (13%), Positives = 53/183 (28%), Gaps = 11/183 (6%)
Query: 71 KPFPIS-EPSDATVLSGSVVEFVCRVGGDPLPTILWRRDDGKMPTGRAKILDDRSLQIEN 129
K F + P V +E C + K+ +
Sbjct: 1 KVFEVHVRPKKLAVEPKGSLEVNCSTTCNQPEVGGLETSLNKILLDE----QAQWKHYLV 56
Query: 130 VGPQDEGLYICDVENLVGSISLRASLTVHLLRDDFRAEPKDTRVASGETALLECGPPKGQ 189
+ + C S+ ++++V+ + T VA G++ +EC P +
Sbjct: 57 SNISHDTVLQCHFTCSGKQESMNSNVSVYQPPRQVILTLQPTLVAVGKSFTIECRVPTVE 116
Query: 190 PEP--TLHWKKNGQFID----LESSKSLDLSRRTLGWLRVRPLYWNVARPRANLNPRYIG 243
P TL + + + +++ + + T R A L+ G
Sbjct: 117 PLDSLTLFLFRGNETLHYETFGKAAPAPQEATATFNSTADREDGHRNFSCLAVLDLMSRG 176
Query: 244 RKM 246
+
Sbjct: 177 GNI 179
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 60.8 bits (147), Expect = 1e-09
Identities = 107/661 (16%), Positives = 188/661 (28%), Gaps = 252/661 (38%)
Query: 71 KPFPISEPSDATVLSGSVVEFVCRVGGDPLPTILW-----RRDDGKM----PTGR----- 116
+P +S GS+ E V +PT + ++ PT
Sbjct: 7 RPLTLS--------HGSL-EHVL-----LVPTASFFIASQLQEQFNKILPEPTEGFAADD 52
Query: 117 ---------AKILD--DRSLQIENVGPQDEGL----------YIC--DVENLVGSISLRA 153
K L ++ VG D+ L Y+ D+ L +
Sbjct: 53 EPTTPAELVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQEN 112
Query: 154 SLTV----HLLRDDFRA-----EPKDTRVASGETALLEC---GPPK------GQPEPTLH 195
T+ L+++ A P D + S AL G + GQ +
Sbjct: 113 DTTLVKTKELIKNYITARIMAKRPFDKKSNS---ALFRAVGEGNAQLVAIFGGQGNTDDY 169
Query: 196 WKKNGQFIDL-ESSKSL--DLSRRTLGWLRVRPLYWNVARPRANLNPRYIGRKMASLLIW 252
++ + DL ++ L DL + + L + R + + + + ++L W
Sbjct: 170 FE---ELRDLYQTYHVLVGDLIKFSAETL------SELIRTTLDAEKVF-TQGL-NILEW 218
Query: 253 -----NHPRVNRLSCFAEGSPLPSVFWTQEGS-----QVLMF-PGNAYGHLHVTQEGTLR 301
N P + L S P + Q ++L F PG +L T
Sbjct: 219 LENPSNTPDKDYL-LSIPIS-CPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGA---TGH 273
Query: 302 IQGVQKEDAGFFVCSALSVAGSTTVRAFLQ-VREFCVLPKGTFTLG---QPNLATGNSDL 357
QG+ +A+++A + + +F VR+ + F +G A N+ L
Sbjct: 274 SQGLV---------TAVAIAETDSWESFFVSVRKAITV---LFFIGVRCY--EAYPNTSL 319
Query: 358 RRIACDLRETDSGLYTCTASSESGETSWSASLSVEPRPGPH-AVHRMPDSGLFP------ 410
L + S E+ E P P ++ + +
Sbjct: 320 P--PSILED----------SLENNEGV----------PSPMLSISNLTQEQVQDYVNKTN 357
Query: 411 --GPPAAPV---ILNTTRGSV-TLGWGEPEPRGGGVAPVIGYTVEYFSSDLQTGWVVAAH 464
P V ++N + V + G P+ L G +
Sbjct: 358 SHLPAGKQVEISLVNGAKNLVVS---GPPQ-------------------SLY-GLNLTLR 394
Query: 465 RITSTS------ITVSDLKPDTSYMFIVRAENSHGLGIPSPVSPITRTLGLNSLVPQH-- 516
+ + S I S+ K S F L P+ P H
Sbjct: 395 KAKAPSGLDQSRIPFSERKLKFSNRF---------L-------PVA--------SPFHSH 430
Query: 517 LLDEARAR----------------LGTKV------VNLRELIPTAS-------TAVRITW 547
LL A + V +LR L + S + + W
Sbjct: 431 LLVPASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSDLRVLSGSISERIVDCIIRLPVKW 490
Query: 548 EVSWGSVPQHLLD---EARARLGTKVVNLRELIPTASTAVRITWEKYNMATVMNAATTTS 604
E + H+LD + LG ++ T VR+ +A ++
Sbjct: 491 ETTTQFKATHILDFGPGGASGLGVLTHRNKD-----GTGVRVI-----VAGTLDINPDDD 540
Query: 605 Y 605
Y
Sbjct: 541 Y 541
Score = 32.3 bits (73), Expect = 0.57
Identities = 29/212 (13%), Positives = 61/212 (28%), Gaps = 81/212 (38%)
Query: 23 ATRTNRVSISGDPGFDSR-RSRSIFGSVL---------GARGALSDDQ------------ 60
R N ++ + D + ++ IF + +G LS Q
Sbjct: 1683 RIRENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQPALTLMEKA 1742
Query: 61 -WKLIAKEALIKPFPISEPSDATVLSG-SVVEF---VCRVGGDPLPTILWRRDDGKMPTG 115
++ + + LI P+DA +G S+ E+ + +
Sbjct: 1743 AFEDLKSKGLI-------PADA-TFAGHSLGEYAALASLADVMSI-------ESL----- 1782
Query: 116 RAKILDDRSLQIENVGPQDE----------------GLYICD--VENLVGSISLRASLTV 157
+++ R + ++ P+DE ++ +V + R V
Sbjct: 1783 -VEVVFYRGMTMQVAVPRDELGRSNYGMIAINPGRVAASFSQEALQYVVERVGKRTGWLV 1841
Query: 158 HLLRDDFRAE------PKDTRVASGETALLEC 183
E VA+G+ L+
Sbjct: 1842 ---------EIVNYNVENQQYVAAGDLRALDT 1864
>2d9q_B Granulocyte colony-stimulating factor receptor; cytokine,
ligand-receptor complex, signaling protein-cytokin; HET:
NAG; 2.80A {Homo sapiens} SCOP: b.1.1.3 b.1.2.1 b.1.2.1
Length = 313
Score = 58.8 bits (141), Expect = 2e-09
Identities = 15/116 (12%), Positives = 30/116 (25%), Gaps = 4/116 (3%)
Query: 388 SLSVEPRPGPHAVHRMPDSGLFPGPPAAPVILNTTRGSVTLGWGEPEPRGGGVAPVIGYT 447
+ + + +P G + L W +P
Sbjct: 187 TSMSPQLCLDPMDVVKLEPPMLRTMDPSPEAAPPQAGCLQLSWEPWQPGLH---INQKCE 243
Query: 448 VEYFSSDLQTGWVVAAH-RITSTSITVSDLKPDTSYMFIVRAENSHGLGIPSPVSP 502
+ + + W + + + + L P T+Y +R G S SP
Sbjct: 244 LRHKPQRGEASWALVGPLPLEALQYELCGLLPATAYTLQIRCIRWPLPGHWSDWSP 299
Score = 50.3 bits (119), Expect = 7e-07
Identities = 35/263 (13%), Positives = 63/263 (23%), Gaps = 55/263 (20%)
Query: 363 DLRETDSGLYTCTASSESGETSWSASLSVEPRPGPHAVHRMPDSGLFPGPPAAPVILNTT 422
L T + L S + L P ++N T
Sbjct: 67 HLNHTQAFLSCSLNWGNSLQILDQVELRAGYPPAIPHNLS--------------CLMNLT 112
Query: 423 RGSVTLGWGEPEPRGGGVAPVIGYTVEYFSSDLQTGW-------VVAAHRITSTSITVSD 475
S+ W +T++ F S V + SI
Sbjct: 113 TSSLICQWEPGPETH----LPTSFTLKSFKSRGNCQTQGDSILDCVPKDGQSHCSIPRKH 168
Query: 476 LKPDTSYMFIVRAENSHGLGIPSPVSPITRTLGLNSLVPQHLLDEARARLGTKVVNLREL 535
L + V+AEN+ G + + L +V + + E
Sbjct: 169 LLLYQNMGIWVQAENALGTSMSPQL-----CLDPMDVVKLE------PPMLRTMDPSPEA 217
Query: 536 IPTASTAVRITWEVSWGSVPQHLLDEARARLGTKVVNLRELIPTASTAVRITWEKYNMAT 595
P + ++++WE + + E R + +W
Sbjct: 218 APPQAGCLQLSWEPWQPGLHINQKCELRHKPQRG---------------EASWALVGPLP 262
Query: 596 VMNAATTTSYTVTHLRKFTKYEF 618
+ Y + L T Y
Sbjct: 263 L----EALQYELCGLLPATAYTL 281
Score = 32.2 bits (72), Expect = 0.46
Identities = 19/89 (21%), Positives = 27/89 (30%), Gaps = 9/89 (10%)
Query: 78 PSDATVLSGSVVEFVCRV-----GGDPLPTILWRRDDGKMPTGRAKILDDR----SLQIE 128
S V G + C + DP P ILWR P GR + L D + +
Sbjct: 7 VSAPIVHLGDPITASCIIKQNCSHLDPEPQILWRLGAELQPGGRQQRLSDGTQESIITLP 66
Query: 129 NVGPQDEGLYICDVENLVGSISLRASLTV 157
++ L I + L
Sbjct: 67 HLNHTQAFLSCSLNWGNSLQILDQVELRA 95
>3q0h_A T cell immunoreceptor with IG and ITIM domains; immune receptor,
adhesion, structural genomics, NEW YORK STR genomics
research consortium, nysgrc; 1.70A {Homo sapiens} PDB:
3rq3_A 3udw_A* 3ucr_A
Length = 117
Score = 54.9 bits (132), Expect = 2e-09
Identities = 15/101 (14%), Positives = 28/101 (27%), Gaps = 17/101 (16%)
Query: 75 ISEPSDATVLSGSVVEFVCRVGGDPLP--TILWRRDDGKMPT--------------GRAK 118
I + + G + C + + W + D + R
Sbjct: 7 IETTGNISAEKGGSIILQCHLSSTTAQVTQVNWEQQDQLLAICNADLGWHISPSFKDRVA 66
Query: 119 ILDDRSLQIENVGPQDEGLYICDVENL-VGSISLRASLTVH 158
L ++++ D G Y C G+ + R L V
Sbjct: 67 PGPGLGLTLQSLTVNDTGEYFCIYHTYPDGTYTGRIFLEVL 107
Score = 37.2 bits (86), Expect = 0.003
Identities = 17/86 (19%), Positives = 30/86 (34%), Gaps = 11/86 (12%)
Query: 260 LSCFAEGSPLP--SVFWTQEGSQVLMFPGN-------AY-GHLHVTQEGTLRIQGVQKED 309
L C + V W Q+ + + + ++ + L +Q + D
Sbjct: 23 LQCHLSSTTAQVTQVNWEQQDQLLAICNADLGWHISPSFKDRVAPGPGLGLTLQSLTVND 82
Query: 310 AGFFVCS-ALSVAGSTTVRAFLQVRE 334
G + C G+ T R FL+V E
Sbjct: 83 TGEYFCIYHTYPDGTYTGRIFLEVLE 108
>2edn_A Myosin-binding protein C, fast-type; beta-sandwich, IG-fold, fast
MYBP-C, C-protein, skeletal muscle fast isoform,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 118
Score = 54.8 bits (131), Expect = 2e-09
Identities = 22/100 (22%), Positives = 33/100 (33%), Gaps = 16/100 (16%)
Query: 75 ISEPSDATVLSGSVVEFVCRVGGDPL---PTILW----RRDDGKMPTGRAKILDD----- 122
+ +P +V +G V +V G L PTI W + G R +
Sbjct: 16 LKKPDSVSVETGKDAVVVAKVNGKELPDKPTIKWFKGKWLELGSKSGARFSFKESHNSAS 75
Query: 123 ----RSLQIENVGPQDEGLYICDVENLVGSISLRASLTVH 158
L I V D G Y +V+ S ++ V
Sbjct: 76 NVYTVELHIGKVVLGDRGYYRLEVKAKDTCDSCGFNIDVE 115
Score = 34.8 bits (79), Expect = 0.020
Identities = 6/31 (19%), Positives = 11/31 (35%)
Query: 363 DLRETDSGLYTCTASSESGETSWSASLSVEP 393
+ D G Y ++ S ++ VE
Sbjct: 86 KVVLGDRGYYRLEVKAKDTCDSCGFNIDVEA 116
Score = 31.7 bits (71), Expect = 0.19
Identities = 12/85 (14%), Positives = 22/85 (25%), Gaps = 10/85 (11%)
Query: 260 LSCFAEGSPL---PSVFWTQEGSQVLMFPGNAYGHLHVTQEG-------TLRIQGVQKED 309
+ G L P++ W + L A + L I V D
Sbjct: 32 VVAKVNGKELPDKPTIKWFKGKWLELGSKSGARFSFKESHNSASNVYTVELHIGKVVLGD 91
Query: 310 AGFFVCSALSVAGSTTVRAFLQVRE 334
G++ + + + V
Sbjct: 92 RGYYRLEVKAKDTCDSCGFNIDVEA 116
>2ee2_A Contactin-1; neural cell surface protein F3, glycoprotein GP135,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 119
Score = 54.7 bits (132), Expect = 2e-09
Identities = 19/95 (20%), Positives = 33/95 (34%), Gaps = 6/95 (6%)
Query: 411 GPPAAPVILNTTRGSVTLGWGEPEPRGGGVAPVIGYTVEYFSSDLQTGWVVAAHRITS-T 469
P + + +++ W V Y + Y+++ + +
Sbjct: 20 EAPTEVGVKVLSSSEISVHWEHV-LEK----IVESYQIRYWAAHDKEEAANRVQVTSQEY 74
Query: 470 SITVSDLKPDTSYMFIVRAENSHGLGIPSPVSPIT 504
S + +L PDT Y V A NS G G PS +
Sbjct: 75 SARLENLLPDTQYFIEVGACNSAGCGPPSDMIEAF 109
Score = 29.6 bits (67), Expect = 1.1
Identities = 9/64 (14%), Positives = 19/64 (29%), Gaps = 20/64 (31%)
Query: 575 ELIPTASTAVRITWE------------KY--------NMATVMNAATTTSYTVTHLRKFT 614
+ +S+ + + WE +Y V + S + +L T
Sbjct: 26 GVKVLSSSEISVHWEHVLEKIVESYQIRYWAAHDKEEAANRVQVTSQEYSARLENLLPDT 85
Query: 615 KYEF 618
+Y
Sbjct: 86 QYFI 89
>4f80_A Butyrophilin subfamily 3 member A1; B7 superfamily, CD277, immune
system; 1.94A {Homo sapiens} PDB: 4f9l_A* 4f9p_A 4f8t_A
4f8q_A
Length = 226
Score = 57.4 bits (138), Expect = 2e-09
Identities = 29/168 (17%), Positives = 46/168 (27%), Gaps = 33/168 (19%)
Query: 73 FPISEPSDA-TVLSGSVVEFVCRV---GGDPLPTILWRRDDGKMP--------------- 113
F + PS + G + C + + W +
Sbjct: 5 FSVLGPSGPILAMVGEDADLPCHLFPTMSAETMELKWVSSSLRQVVNVYADGKEVEDRQS 64
Query: 114 ---TGRAKILDDR------SLQIENVGPQDEGLYICDVENLVGSISLRASLTVHLLRDDF 164
GR IL D +L+I NV D G Y+C ++ V L
Sbjct: 65 APYRGRTSILRDGITAGKAALRIHNVTASDSGKYLCYFQDGDFY----EKALVELKVAAL 120
Query: 165 RAEPK-DTRVASGETALLECGPPKGQPEPTLHWKKNGQFIDLESSKSL 211
++ D + LEC P+P + W N +
Sbjct: 121 GSDLHVDVKGYKDGGIHLECRSTGWYPQPQIQWSNNKGENIPTVEAPV 168
Score = 39.3 bits (91), Expect = 0.002
Identities = 14/97 (14%), Positives = 28/97 (28%), Gaps = 8/97 (8%)
Query: 69 LIKPFPISEPS-DATVLSGSVVEFVCR-VGGDPLPTILWRRDDGKMPTGRAKIL---DDR 123
L S+ D + CR G P P I W + G+ +
Sbjct: 115 LKVAALGSDLHVDVKGYKDGGIHLECRSTGWYPQPQIQWSNNKGENIPTVEAPVVADGVG 174
Query: 124 SLQIE---NVGPQDEGLYICDVENLVGSISLRASLTV 157
+ + C + + + + AS+++
Sbjct: 175 LYAVAASVIMRGSSGEGVSCTIRSSLLGLEKTASISI 211
Score = 31.2 bits (70), Expect = 0.69
Identities = 27/214 (12%), Positives = 50/214 (23%), Gaps = 66/214 (30%)
Query: 172 RVASGETALLECG--PPKGQPEPTLHWKKNGQFIDLESSKSLDLSRRTLGWLRVRPLYWN 229
GE A L C P L W + L + + + +
Sbjct: 15 LAMVGEDADLPCHLFPTMSAETMELKWVSS------------SLRQVVNVYADGKEVEDR 62
Query: 230 VA---RPRANLNPRYIGRKMASLLIWN--------------------------------- 253
+ R R ++ I A+L I N
Sbjct: 63 QSAPYRGRTSILRDGITAGKAALRIHNVTASDSGKYLCYFQDGDFYEKALVELKVAALGS 122
Query: 254 HPRVN---------RLSCFAEG-SPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQ 303
V+ L C + G P P + W+ + + + G +
Sbjct: 123 DLHVDVKGYKDGGIHLECRSTGWYPQPQIQWSNNKGENIP---TVEAPVVADGVGLYAVA 179
Query: 304 G---VQKEDAGFFVCSALSVAGSTTVRAFLQVRE 334
++ C+ S A + + +
Sbjct: 180 ASVIMRGSSGEGVSCTIRSSLLGLEKTASISIAD 213
Score = 29.7 bits (66), Expect = 2.3
Identities = 13/68 (19%), Positives = 22/68 (32%), Gaps = 2/68 (2%)
Query: 340 KGTFTLGQPNLATGNSDLRRIACDLRETDSGLYTCTASSESGETSWSASLSVEPRPGPHA 399
+G ++ + + G + LR I ++ +DSG Y C L V
Sbjct: 68 RGRTSILRDGITAGKAALR-IH-NVTASDSGKYLCYFQDGDFYEKALVELKVAALGSDLH 125
Query: 400 VHRMPDSG 407
V
Sbjct: 126 VDVKGYKD 133
>1wj3_A KIAA1496 protein; beta sandwich, PANG, structural genomics, riken
structural genomics/proteomics initiative, RSGI,
neuropeptide; NMR {Homo sapiens} SCOP: b.1.2.1
Length = 117
Score = 54.5 bits (131), Expect = 3e-09
Identities = 26/97 (26%), Positives = 34/97 (35%), Gaps = 7/97 (7%)
Query: 412 PPAAP--VILNTTRGSVTLGWGEPEPRGGGVAPVIGYTVEYFSSDLQTGWVVAAHRITST 469
P P V+ N T V L W E + V GY V Y +S V+ T+
Sbjct: 18 PSQPPGNVVWNATDTKVLLNW-EQVKAMENESEVTGYKVFYRTSSQNNVQVL----NTNK 72
Query: 470 SITVSDLKPDTSYMFIVRAENSHGLGIPSPVSPITRT 506
+ L Y+ V+A G G S I R
Sbjct: 73 TSAELVLPIKEDYIIEVKATTDGGDGTSSEQIRIPRI 109
>1va9_A DOWN syndrome cell adhesion molecule like- protein 1B; FNIII
domain, dscaml1 protein, structural genomics; NMR {Homo
sapiens} SCOP: b.1.2.1
Length = 122
Score = 53.9 bits (130), Expect = 4e-09
Identities = 26/103 (25%), Positives = 40/103 (38%), Gaps = 10/103 (9%)
Query: 411 GPPAAPVILNTTRGSVTLGWGEPEP-RGGGVAPVIGYTVEYFSSDLQTGWVVAAHRIT-- 467
GPP + T S+ + W P+ GV + GY + Y + + + +
Sbjct: 17 GPPMDVTLQPVTSQSIQVTWKAPKKELQNGV--IRGYQIGYRENSPGSNGQYSIVEMKAT 74
Query: 468 --STSITVSDLKPDTSYMFIVRAENSHGLGIPSPVSPIT-RTL 507
S T+ +LK Y +V+A N G G S I TL
Sbjct: 75 GDSEVYTLDNLKKFAQYGVVVQAFNRAGTGPSSS--EINATTL 115
Score = 29.3 bits (66), Expect = 1.5
Identities = 12/71 (16%), Positives = 26/71 (36%), Gaps = 27/71 (38%)
Query: 575 ELIPTASTAVRITWE---------------------------KYNMATVMNAATTTSYTV 607
L P S ++++TW+ +Y++ + + YT+
Sbjct: 23 TLQPVTSQSIQVTWKAPKKELQNGVIRGYQIGYRENSPGSNGQYSIVEMKATGDSEVYTL 82
Query: 608 THLRKFTKYEF 618
+L+KF +Y
Sbjct: 83 DNLKKFAQYGV 93
>1jbj_A CD3 epsilon and gamma ectodomain fragment complex; beta-sheet,
C2-SET immunoglobulin superfamily, H-bonded G strand
PAIR, single-chain; NMR {Mus musculus} SCOP: b.1.1.4
b.1.1.4 PDB: 1xmw_A
Length = 186
Score = 54.9 bits (131), Expect = 7e-09
Identities = 29/171 (16%), Positives = 54/171 (31%), Gaps = 39/171 (22%)
Query: 76 SEPSDATV-LSGSVVEFVCRVGGDPLPTILWRRDDGKMPTGRAKILDDRSLQIENVGP-Q 133
+E + V +SG+ VE C + D + W ++ ++P D+ L +++ +
Sbjct: 3 AENIEYKVSISGTSVELTCPL--DSDENLKWEKNGQELPQK-----HDKHLVLQDFSEVE 55
Query: 134 DEGLYICDVENLVGSISLRASLTVHLLRD------------------------DFRAEPK 169
D G Y+C + L V D + +
Sbjct: 56 DSGYYVCYTPASNKNTYLYLKARVGSADDAKKDAAKKDDAKKDDAKKDGSQTNKAKNLVQ 115
Query: 170 DTRVASGETALLECGPPKGQPEPTLHWKKNGQFIDL--ESSKSLDLSRRTL 218
+ LL CG T+ W K+G I + + +L
Sbjct: 116 VDGSRGDGSVLLTCGLTD----KTIKWLKDGSIISPLNATKNTWNLGNNAK 162
Score = 36.8 bits (84), Expect = 0.011
Identities = 34/200 (17%), Positives = 63/200 (31%), Gaps = 53/200 (26%)
Query: 166 AEPKDTRVA-SGETALLECGPPKGQPEPTLHWKKNGQFIDLESSKSLDL----------- 213
AE + +V+ SG + L C + L W+KNGQ + + K L L
Sbjct: 3 AENIEYKVSISGTSVELTC---PLDSDENLKWEKNGQELPQKHDKHLVLQDFSEVEDSGY 59
Query: 214 --------SRRTLGWLRVRPLYWNVARPRA----NLNPRYIGRKMASLLIWNHPRVNR-- 259
++ T +L+ R + A+ A + + + +
Sbjct: 60 YVCYTPASNKNTYLYLKARVGSADDAKKDAAKKDDAKKDDAKKDGSQTNKAKNLVQVDGS 119
Query: 260 -------LSCFAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGF 312
L+C G ++ W ++GS + + T + K+ G
Sbjct: 120 RGDGSVLLTC---GLTDKTIKWLKDGSIISPLNAT---------KNTWNLGNNAKDPRGT 167
Query: 313 FVCSALSVAGSTTVRAFLQV 332
+ C + LQV
Sbjct: 168 YQCQGAKETSNP-----LQV 182
Score = 33.7 bits (76), Expect = 0.091
Identities = 19/110 (17%), Positives = 29/110 (26%), Gaps = 7/110 (6%)
Query: 41 RSRSIFGSVLGARGALSDDQWKLIAKEALIKPFPISEPSDATVL-SGSVVEFVCRVGGDP 99
++R A DD K AK+ + V C G
Sbjct: 76 KARVGSADDAKKDAAKKDDAKKDDAKKDGSQTNKAKNLVQVDGSRGDGSVLLTC---GLT 132
Query: 100 LPTILWRRDDGKMPTGRAKILDDRSLQIENVGPQDEGLYICDVENLVGSI 149
TI W +D G + + + + N G Y C +
Sbjct: 133 DKTIKWLKD-GSIISPLNA--TKNTWNLGNNAKDPRGTYQCQGAKETSNP 179
Score = 28.7 bits (63), Expect = 4.1
Identities = 15/145 (10%), Positives = 35/145 (24%), Gaps = 4/145 (2%)
Query: 349 NLATGNSDLRRIACDLRETDSGLYTCTASSESGETSWSASLSVEPRPGPHAVHRMPDSGL 408
L + + DSG Y C + + T V D
Sbjct: 37 ELPQKHDKHLVLQDFSEVEDSGYYVCYTPASNKNTYLYLKARVGSADDAKKDAAKKDDAK 96
Query: 409 FPGPPAAPVILNTTRGSVTLGWGEPEPRGGGVAPVIGYTVEYFSSDLQTGWVVAAHRITS 468
N + V + + + T+++ + G +++ T
Sbjct: 97 KDDAKKDGSQTNKAKNLVQVDGSRGDGSVLLTCGLTDKTIKWL----KDGSIISPLNATK 152
Query: 469 TSITVSDLKPDTSYMFIVRAENSHG 493
+ + + D + +
Sbjct: 153 NTWNLGNNAKDPRGTYQCQGAKETS 177
>2dru_A Chimera of CD48 antigen and T-cell surface antige; CD2 binding
domain of CD48, immune system; HET: NAG; 2.60A {Rattus
norvegicus}
Length = 180
Score = 54.5 bits (131), Expect = 8e-09
Identities = 23/164 (14%), Positives = 47/164 (28%), Gaps = 26/164 (15%)
Query: 73 FPISEPSDATVLSGSVVEFVCRV-GGDPLPTILWRRDDGK-----MPTGRAKILDDR--- 123
F + ++GS V + W + P G+ + +
Sbjct: 1 FQDQSVPNVNAITGSNVTLTILKHPLASYQRLTWLHTTNQKILEYFPNGKKTVFESVFKD 60
Query: 124 ---------SLQIENVGPQDEGLYICDVENLVGSISLRASLTVHLLRDDFRAEPKDTRVA 174
+L+I NV +D G Y + + + ++ V+ K
Sbjct: 61 RVDLDKTNGALRIYNVSKEDRGDYYMRMLH-ETEDQWKITMEVY------EMVSKPMIYW 113
Query: 175 SGETALLECGPPKGQPEPTLHWKKNGQFIDLESSKSLDLSRRTL 218
A L C +G + L + + + K++ L
Sbjct: 114 ECSNATLTCEVLEG-TDVELKLYQGKEHLRSLRQKTMSYQWTNL 156
Score = 37.6 bits (87), Expect = 0.005
Identities = 10/77 (12%), Positives = 18/77 (23%), Gaps = 9/77 (11%)
Query: 74 PISEPSDATVLSGSVVEFVCRVGGDPLPTILWRRDDGKMPTGRAKILDDRSLQIENVGPQ 133
+S+P S C V + + + + R +
Sbjct: 105 MVSKPM--IYWECSNATLTCEVLEGTDVELKLYQGKEHLRSLR-------QKTMSYQWTN 155
Query: 134 DEGLYICDVENLVGSIS 150
+ C N V S
Sbjct: 156 LRAPFKCKAVNRVSQES 172
Score = 35.6 bits (82), Expect = 0.022
Identities = 17/106 (16%), Positives = 29/106 (27%), Gaps = 27/106 (25%)
Query: 294 VTQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVRE----------------FCV 337
G LRI V KED G + L + ++V E C
Sbjct: 65 DKTNGALRIYNVSKEDRGDYYMRMLH-ETEDQWKITMEVYEMVSKPMIYWECSNATLTCE 123
Query: 338 LPKGT------FTLGQPNLATGNSDLRRIACDLRETDSGLYTCTAS 377
+ +GT + + + + + + C A
Sbjct: 124 VLEGTDVELKLYQGKEHLRSLRQKTMSYQWTN----LRAPFKCKAV 165
>1z9m_A GAPA225; nectin-like, IG-like domain, V domain, cell adhesion;
2.40A {Homo sapiens}
Length = 145
Score = 53.6 bits (128), Expect = 8e-09
Identities = 29/114 (25%), Positives = 47/114 (41%), Gaps = 14/114 (12%)
Query: 57 SDDQWKLIAKEALIKPFPISEPSDATVLSGSVVEFVCRVGGDPLPTILWRRDDGKMPT-G 115
+DD K +A L + SD TV++G V C+V ++ W + G
Sbjct: 24 TDDDDKAMADINLSQDDSQPWTSDETVVAGGTVVLKCQVKDHEDSSLQWSNPAQQTLYFG 83
Query: 116 RAKIL-DDR-----------SLQIENVGPQDEGLYICDVENLVGSISLRASLTV 157
+ L D+R S+ I NV DEG Y C + + + ++ +TV
Sbjct: 84 EKRALRDNRIQLVTSTPHELSISISNVALADEGEYTCSI-FTMPVRTAKSLVTV 136
Score = 39.4 bits (91), Expect = 8e-04
Identities = 17/81 (20%), Positives = 28/81 (34%), Gaps = 8/81 (9%)
Query: 259 RLSCFAEGSPLPSVFWTQEGSQVLMFPGNAYGH------LHVTQ-EGTLRIQGVQKEDAG 311
L C + S+ W+ Q L F + T E ++ I V D G
Sbjct: 57 VLKCQVKDHEDSSLQWSNPAQQTLYFGEKRALRDNRIQLVTSTPHELSISISNVALADEG 116
Query: 312 FFVCSALSVAGSTTVRAFLQV 332
+ CS ++ T + + V
Sbjct: 117 EYTCSIFTMPVRTAK-SLVTV 136
Score = 27.8 bits (61), Expect = 5.7
Identities = 12/43 (27%), Positives = 19/43 (44%), Gaps = 1/43 (2%)
Query: 161 RDDFRAEPKDTRVASGETALLECGPPKGQPEPTLHWKKNGQFI 203
+DD + D V +G T +L+C K + +L W Q
Sbjct: 38 QDDSQPWTSDETVVAGGTVVLKC-QVKDHEDSSLQWSNPAQQT 79
>1x5h_A Neogenin; RGM binding, fibronectin type III domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
b.1.2.1
Length = 132
Score = 53.5 bits (129), Expect = 8e-09
Identities = 18/97 (18%), Positives = 29/97 (29%), Gaps = 7/97 (7%)
Query: 411 GPPAAPVILNTTRGSVTLGWGEP---EPRGGGVAPVIGYTVEYFSSDLQTGWVVAAHRIT 467
P + S+ + W P G + GY + Y + ++ T
Sbjct: 20 AAPQNLSLEVRNSKSIMIHWQPPAPATQNG----QITGYKIRYRKASRKSDVTETLVSGT 75
Query: 468 STSITVSDLKPDTSYMFIVRAENSHGLGIPSPVSPIT 504
S + L T Y F V A +G G +
Sbjct: 76 QLSQLIEGLDRGTEYNFRVAALTINGTGPATDWLSAE 112
Score = 28.5 bits (64), Expect = 2.9
Identities = 11/67 (16%), Positives = 21/67 (31%), Gaps = 23/67 (34%)
Query: 575 ELIPTASTAVRITWE-----------------------KYNMATVMNAATTTSYTVTHLR 611
L S ++ I W+ K ++ + + T S + L
Sbjct: 26 SLEVRNSKSIMIHWQPPAPATQNGQITGYKIRYRKASRKSDVTETLVSGTQLSQLIEGLD 85
Query: 612 KFTKYEF 618
+ T+Y F
Sbjct: 86 RGTEYNF 92
>1k85_A Chitinase A1; fibronectin type III domain, chitin binding domain,
carbohydrase, horizontal gene transfer, hydrolase; NMR
{Bacillus circulans} SCOP: b.1.2.1
Length = 88
Score = 51.9 bits (125), Expect = 9e-09
Identities = 26/84 (30%), Positives = 36/84 (42%), Gaps = 12/84 (14%)
Query: 410 PGPPAAPVILNTTRGSVTLGWGEPEPRGGGVAPVIGYTVEYFSSDLQTGWVVAAHRITST 469
P P T S+TL W G V GY V ++ T +T T
Sbjct: 4 PTAPTNLASTAQTTSSITLSWTASTDNVG----VTGYDVYNGTALATT--------VTGT 51
Query: 470 SITVSDLKPDTSYMFIVRAENSHG 493
+ T+S L DTSY F V+A+++ G
Sbjct: 52 TATISGLAADTSYTFTVKAKDAAG 75
Score = 26.5 bits (59), Expect = 8.0
Identities = 10/53 (18%), Positives = 20/53 (37%), Gaps = 12/53 (22%)
Query: 579 TASTAVRITWEK------------YNMATVMNAATTTSYTVTHLRKFTKYEFF 619
++++ ++W YN + T T+ T++ L T Y F
Sbjct: 15 QTTSSITLSWTASTDNVGVTGYDVYNGTALATTVTGTTATISGLAADTSYTFT 67
>2edx_A Protein tyrosine phosphatase, receptor type, F; LAR protein,
leukocyte antigen related, structural genomics, NPPSFA;
NMR {Homo sapiens}
Length = 134
Score = 53.1 bits (128), Expect = 1e-08
Identities = 22/97 (22%), Positives = 35/97 (36%), Gaps = 5/97 (5%)
Query: 411 GPPAAPVILNTTRGSVTLGWGEPEP-RGGGVAPVIGYTVEY--FSSDLQTGWVVAAHRIT 467
PP + ++ +V + W P GV + Y+V Y + + VV
Sbjct: 20 APPQKVMCVSMGSTTVRVSWVPPPADSRNGV--ITQYSVAYEAVDGEDRGRHVVDGISRE 77
Query: 468 STSITVSDLKPDTSYMFIVRAENSHGLGIPSPVSPIT 504
+S + L+ T Y VRA G G S +
Sbjct: 78 HSSWDLVGLEKWTEYRVWVRAHTDVGPGPESSPVLVR 114
Score = 28.1 bits (63), Expect = 4.8
Identities = 10/63 (15%), Positives = 20/63 (31%), Gaps = 25/63 (39%)
Query: 581 STAVRITW-------------------------EKYNMATVMNAATTTSYTVTHLRKFTK 615
ST VR++W ++ + +S+ + L K+T+
Sbjct: 32 STTVRVSWVPPPADSRNGVITQYSVAYEAVDGEDRGRHVVDGISREHSSWDLVGLEKWTE 91
Query: 616 YEF 618
Y
Sbjct: 92 YRV 94
>1cd9_B G-CSF-R, protein (G-CSF receptor); class1 cytokine, hematopoietic
receptor, signal transduction cytokine; HET: NAG; 2.80A
{Mus musculus} SCOP: b.1.2.1 b.1.2.1 PDB: 1pgr_B 1cto_A
1gcf_A
Length = 215
Score = 54.8 bits (131), Expect = 1e-08
Identities = 19/106 (17%), Positives = 30/106 (28%), Gaps = 10/106 (9%)
Query: 404 PDSGLFPGPPAAPV------ILNTTRGSVTLGWGEPEPRGGGVAPVIGYTVEYFSSDLQT 457
P + PP +++ G + L W +P + Y
Sbjct: 103 PMDVVKLEPPMLQALDIGPDVVSHQPGCLWLSWKPWKPSEY---MEQECELRYQPQLKGA 159
Query: 458 GWVVAAH-RITSTSITVSDLKPDTSYMFIVRAENSHGLGIPSPVSP 502
W + H + + L Y +R S G SP SP
Sbjct: 160 NWTLVFHLPSSKDQFELCGLHQAPVYTLQMRCIRSSLPGFWSPWSP 205
Score = 46.4 bits (109), Expect = 8e-06
Identities = 33/218 (15%), Positives = 58/218 (26%), Gaps = 45/218 (20%)
Query: 412 PPAAPVIL----NTTRGSVTLGWGEPEPRGGGVAPVIGYTVEYFSSDLQTGW-------V 460
PPA+P L + T S+ W + ++ F S +
Sbjct: 4 PPASPSNLSCLMHLTTNSLVCQWEPGPETH----LPTSFILKSFRSRADCQYQGDTIPDC 59
Query: 461 VAAHRITSTSITVSDLKPDTSYMFIVRAENSHGLGIPSPVSPITRTLGLNSLVPQHLLDE 520
VA R + SI +L V+AEN G SP + + P
Sbjct: 60 VAKKRQNNCSIPRKNLLLYQYMAIWVQAENMLG-SSESPKLCLDPMDVVKLEPPMLQ--- 115
Query: 521 ARARLGTKVVNLRELIPTASTAVRITWEVSWGSVPQHLLDEARARLGTKVVNLRELIPTA 580
+ +++ + ++W+ S E R + K N
Sbjct: 116 -------ALDIGPDVVSHQPGCLWLSWKPWKPSEYMEQECELRYQPQLKGAN-------- 160
Query: 581 STAVRITWEKYNMATVMNAATTTSYTVTHLRKFTKYEF 618
W + + + L + Y
Sbjct: 161 -------WTLVFHLPS----SKDQFELCGLHQAPVYTL 187
>2dbj_A Proto-oncogene tyrosine-protein kinase MER precursor; C-MER,
receptor tyrosine kinase mertk, FN3 domain, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 124
Score = 52.5 bits (126), Expect = 1e-08
Identities = 18/101 (17%), Positives = 34/101 (33%), Gaps = 12/101 (11%)
Query: 412 PPAAP----VILNTTRGSVTLGWGEP---EPRGGGVAPVIGYTVEYFSSDLQTGWVVAAH 464
P AP V LN + +V + W +P + G ++GY + + +
Sbjct: 18 PSVAPLNVTVFLNESSDNVDIRWMKPPTKQQDG----ELVGYRISHVWQSAGISKELLEE 73
Query: 465 RI-TSTSITVSDLKPDTSYMFIVRAENSHGLGIPSPVSPIT 504
+ +S + + + A G+G S I
Sbjct: 74 VGQNGSRARISVQVHNATCTVRIAAVTRGGVGPFSDPVKIF 114
Score = 27.5 bits (61), Expect = 6.4
Identities = 7/71 (9%), Positives = 15/71 (21%), Gaps = 24/71 (33%)
Query: 572 NLRELIPTASTAVRITWEK------------YNMA------------TVMNAATTTSYTV 607
N+ + +S V I W K Y ++ + +
Sbjct: 24 NVTVFLNESSDNVDIRWMKPPTKQQDGELVGYRISHVWQSAGISKELLEEVGQNGSRARI 83
Query: 608 THLRKFTKYEF 618
+
Sbjct: 84 SVQVHNATCTV 94
>2ed9_A Netrin receptor DCC; tumor suppressor protein DCC, colorectal
cancer suppressor, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 124
Score = 52.3 bits (126), Expect = 2e-08
Identities = 17/97 (17%), Positives = 30/97 (30%), Gaps = 9/97 (9%)
Query: 411 GPPAAPVILNTTRGSVTLGWGEP---EPRGGGVAPVIGYTVEYFSSDLQTGWVVAAHRIT 467
PP + S+ + W P G + GY + + + +
Sbjct: 30 APPQNVSLEVVNSRSIKVSWLPPPSGTQNG----FITGYKIRHRKTTRRGEMET--LEPN 83
Query: 468 STSITVSDLKPDTSYMFIVRAENSHGLGIPSPVSPIT 504
+ + L+ + Y F V A +G G PS
Sbjct: 84 NLWYLFTGLEKGSQYSFQVSAMTVNGTGPPSNWYTAE 120
Score = 31.9 bits (73), Expect = 0.21
Identities = 24/135 (17%), Positives = 43/135 (31%), Gaps = 40/135 (29%)
Query: 486 VRAENSHGLGIPSPVSPITRTL-GLNSLVPQHLLDEARARLGTKVVNLRELIPTASTAVR 544
+ N +G G+ + TL + S PQ++ L S +++
Sbjct: 4 GSSGNRYGPGVSTDDI-TVVTLSDVPSAPPQNV----------------SLEVVNSRSIK 46
Query: 545 ITWE-VSWGSVPQHLLDEARARLGTKVVNLRELIPTASTAVRITWEKYNMATVMNAATTT 603
++W G+ + G K+ R T + M T+
Sbjct: 47 VSWLPPPSGTQNGFIT-------GYKIR------------HRKTTRRGEMETL--EPNNL 85
Query: 604 SYTVTHLRKFTKYEF 618
Y T L K ++Y F
Sbjct: 86 WYLFTGLEKGSQYSF 100
>1ccz_A Protein (CD58); LFA-3, glycoprotein; HET: NAG; 1.80A {Homo sapiens}
SCOP: b.1.1.1 b.1.1.3 PDB: 1ci5_A 1qa9_B
Length = 171
Score = 52.6 bits (126), Expect = 4e-08
Identities = 25/155 (16%), Positives = 42/155 (27%), Gaps = 24/155 (15%)
Query: 78 PSDATVLSGSVVEFVCRVGGDPLPTILWRRDDGKMPTGRAK--------------ILDDR 123
+ V F PL +LW++ K+
Sbjct: 2 SQQIYGVVYGNVTFHVPSN-VPLKEVLWKKQKDKVAELENSEFRAFSSFKNRVYLDTVSG 60
Query: 124 SLQIENVGPQDEGLYICDVENLVGSISLRASLTVHLLRDDFRAEPKDTRVASGETALLEC 183
SL I N+ DE Y + N+ ++ L V K A L C
Sbjct: 61 SLTIYNLTSSDEDEYEMESPNITDTMKFF--LYV------LEMVSKPMIYWECSNATLTC 112
Query: 184 GPPKGQPEPTLHWKKNGQFIDLESSKSLDLSRRTL 218
+G + L + + + K++ L
Sbjct: 113 EVLEG-TDVELKLYQGKEHLRSLRQKTMSYQWTNL 146
Score = 44.9 bits (106), Expect = 1e-05
Identities = 20/145 (13%), Positives = 39/145 (26%), Gaps = 31/145 (21%)
Query: 260 LSCFAEGSPLPSVFWTQEGSQVLMFPGNAY--------GHLHVTQEGTLRIQGVQKEDAG 311
PL V W ++ +V + + T G+L I + D
Sbjct: 15 FHV-PSNVPLKEVLWKKQKDKVAELENSEFRAFSSFKNRVYLDTVSGSLTIYNLTSSDED 73
Query: 312 FFVCSALSVAGSTTVRAFLQVRE----------------FCVLPKGT---FTLGQPNLAT 352
+ + ++ + L V E C + +GT L Q
Sbjct: 74 EYEMESPNITDTMKFF--LYVLEMVSKPMIYWECSNATLTCEVLEGTDVELKLYQGKEHL 131
Query: 353 GNSDLRRIACDLRETDSGLYTCTAS 377
+ + ++ + C A
Sbjct: 132 RSLRQKTMSYQWTN-LRAPFKCKAV 155
Score = 33.7 bits (77), Expect = 0.077
Identities = 10/84 (11%), Positives = 19/84 (22%), Gaps = 9/84 (10%)
Query: 74 PISEPSDATVLSGSVVEFVCRVGGDPLPTILWRRDDGKMPTGRAKILDDRSLQIENVGPQ 133
+S+P S C V + + + + R +
Sbjct: 95 MVSKPM--IYWECSNATLTCEVLEGTDVELKLYQGKEHLRSLR-------QKTMSYQWTN 145
Query: 134 DEGLYICDVENLVGSISLRASLTV 157
+ C N V S +
Sbjct: 146 LRAPFKCKAVNRVSQESEMEVVNC 169
Score = 28.7 bits (64), Expect = 3.7
Identities = 7/37 (18%), Positives = 13/37 (35%), Gaps = 3/37 (8%)
Query: 363 DLRETDSGLYTCTASSESGETSWSASLSV-EPRPGPH 398
+L +D Y + + + + L V E P
Sbjct: 66 NLTSSDEDEYEMESPNITDTMKF--FLYVLEMVSKPM 100
>2gys_A Cytokine receptor common beta chain; dimer of interlocking chains
of fibronectin-III domains, FOU fibronectin-III domains
PER chain; HET: NAG FUC BMA NDG; 2.70A {Homo sapiens}
SCOP: b.1.2.1 b.1.2.1 b.1.2.1 b.1.2.1 PDB: 1gh7_A*
3cxe_A* 1egj_A* 1c8p_A
Length = 419
Score = 54.2 bits (129), Expect = 7e-08
Identities = 25/137 (18%), Positives = 46/137 (33%), Gaps = 16/137 (11%)
Query: 372 YTCT--ASSESGETSWSASLSVEPRPGPHAVHRMPDSGLFPGPPAAPVI-LNTTRGSVTL 428
+ C + + +SV+PR + + A P + + S +L
Sbjct: 286 HHCQIPVPDPATHGQYI--VSVQPRRAEKHIKSSVNI-----QMAPPSLQVTKDGDSYSL 338
Query: 429 GWGEPEPRGGGVAPVIGYTVEYFSSDLQTGWVVAAHRI-TSTSITVSDLKPDTSYMFIVR 487
W + R + + ++Y D T + + S+ + L+P T Y VR
Sbjct: 339 RWETMKMRYEHI--DHTFEIQY-RKDTATWKDSKTETLQNAHSMALPALEPSTRYWARVR 395
Query: 488 A--ENSHGLGIPSPVSP 502
+ GI S S
Sbjct: 396 VRTSRTGYNGIWSEWSE 412
Score = 51.2 bits (121), Expect = 6e-07
Identities = 15/103 (14%), Positives = 31/103 (30%), Gaps = 5/103 (4%)
Query: 404 PDSGLFPGPPAAPVILNTTRGSVTLGWGEPEPRGGG---VAPVIGYTVEYFS-SDLQTGW 459
+ P P + ++T + L W + + V Y D
Sbjct: 103 LTQHVQPPEPRD-LQISTDQDHFLLTWSVALGSPQSHWLSPGDLEFEVVYKRLQDSWEDA 161
Query: 460 VVAAHRITSTSITVSDLKPDTSYMFIVRAENSHGLGIPSPVSP 502
+ + ++ L P ++Y+ VR + G + S
Sbjct: 162 AILLSNTSQATLGPEHLMPSSTYVARVRTRLAPGSRLSGRPSK 204
>2q7n_A Leukemia inhibitory factor receptor; cytokine cell surface receptor
complex LIFR LIF, cytokine RE cytokine complex; HET: NAG
FUC MAN; 4.00A {Mus musculus}
Length = 488
Score = 53.4 bits (127), Expect = 1e-07
Identities = 34/211 (16%), Positives = 50/211 (23%), Gaps = 39/211 (18%)
Query: 412 PPAAPVIL---NTTRGSVTLGWGEPEPRGGGVAPVIGYTVEY-FSSDLQTGWVVAAHRIT 467
PP P L + W G YT+ S +
Sbjct: 286 PPDVPQKLSCETHDLKEIICSWNPGRITGLVGPRNTEYTLFESISGKSAVFHRIEGLTNE 345
Query: 468 STSITVSDLKPDTSYMFIVRAENSHGLGIPSPVSPITRTLGLNSLVPQHLLDEARARLGT 527
+ + V + F + N LG I T + P L
Sbjct: 346 TYRLGVQMHPGQEIHNFTLTGRNP--LGQAQSAVVINVTERVAPHDPTSL---------- 393
Query: 528 KVVNLRELIPTASTAVRITWEVSWGSVPQHLLDEARARLGTKVVNLRELIPTASTAVRIT 587
KV ++ ST V +W + +LL +
Sbjct: 394 KVKDIN------STVVTFSWYLPGNFTKINLLCQIEIC-----------------KANSK 430
Query: 588 WEKYNMATVMNAATTTSYTVTHLRKFTKYEF 618
E N +T V L +T Y F
Sbjct: 431 KEVRNATIRGAEDSTYHVAVDKLNPYTAYTF 461
Score = 48.4 bits (114), Expect = 5e-06
Identities = 19/96 (19%), Positives = 30/96 (31%), Gaps = 7/96 (7%)
Query: 410 PGPPAAPVILNTTRGSVTLGWGEPEPRGGGVAPVIGYTVEY---FSSDLQTGWVVAAHRI 466
P P + + + VT W P + +E S +
Sbjct: 387 PHDPTSLKVKDINSTVVTFSWYLPGNFTK---INLLCQIEICKANSKKEVRNATIRGAED 443
Query: 467 TSTSITVSDLKPDTSYMFIVRAENSHGLGIPSPVSP 502
++ + V L P T+Y F VR +S S S
Sbjct: 444 STYHVAVDKLNPYTAYTFRVRC-SSKTFWKWSRWSD 478
>3e0g_A Leukemia inhibitory factor receptor; IG domain, cytokine binding
homology region (CHR), cell MEMB disease mutation,
glycoprotein, membrane; HET: NAG MAN FUC; 3.10A {Homo
sapiens}
Length = 483
Score = 53.3 bits (127), Expect = 1e-07
Identities = 31/261 (11%), Positives = 65/261 (24%), Gaps = 21/261 (8%)
Query: 259 RLSCFAEGSPLPSVFWTQEGSQVLMFPGNAY---GHLHVTQEGTLRIQGVQKEDAGFFVC 315
C ++ L ++ + + N ++ V+ + +++ V
Sbjct: 217 TFCCVSQEKVLSALIGHTNCPLIHLDGENVAIKIRNISVSASSGTNVVFTTEDNIFGTVI 276
Query: 316 SALSVAGS---TTVRAFLQVREFCVLPKGTFTLGQPNLATG------NSDLRRIACDLRE 366
A + C G T AT S
Sbjct: 277 FAGYPPDTPQQLNCETHDLKEIICSWNPGRVTALVGPRATSYTLVESFSGKYVRLKRAEA 336
Query: 367 TDSGLYTCTASSESGETSWSASLSVEP--RPGPHAVHRMPDSGLFPGPPAAPVILNTTRG 424
+ Y + ++ +L+ + ++P P + + +
Sbjct: 337 PTNESYQLLFQMLPNQEIYNFTLNAHNPLGRSQSTILVNITEKVYPHTPTSFKVKDINST 396
Query: 425 SVTLGWGEPEPRGGGVAPVIGYTVEYFSSDLQTGWV---VAAHRITSTSITVSDLKPDTS 481
+V L W P +E S+ + +S + + L P T
Sbjct: 397 AVKLSWHLPGNFAK---INFLCEIEIKKSNSVQEQRNVTIQGVENSSYLVALDKLNPYTL 453
Query: 482 YMFIVRAENSHGLGIPSPVSP 502
Y F +R S S
Sbjct: 454 YTFRIRCSTETF-WKWSKWSN 473
Score = 34.8 bits (79), Expect = 0.090
Identities = 20/139 (14%), Positives = 36/139 (25%), Gaps = 19/139 (13%)
Query: 72 PFPISEPSDATVLSGSVVEFVCRVGGDPLPTILWRRDDGKMPTGRAKILDDRSLQIENVG 131
P D +L GS + F C L ++ + LD ++ I+
Sbjct: 199 SQTKVFPQDKVILVGSDITFCCVSQEKVLSALIGHTN------CPLIHLDGENVAIKIRN 252
Query: 132 PQDEGLYICDVENLVGSISLRASLTVHLLRDDFRAEPKDTRVASGETALLEC----GPPK 187
+V + D P+ + + + C G
Sbjct: 253 ISVSASSGTNVVFTTEDNIFGTVIFAGYPPD----TPQQLNCETHDLKEIICSWNPGRVT 308
Query: 188 GQPEP-----TLHWKKNGQ 201
P TL +G+
Sbjct: 309 ALVGPRATSYTLVESFSGK 327
>1iam_A ICAM-1, CD54, intercellular adhesion molecule-1; rhinovirus
receptor, cell adhesion, integrin ligand, glycopr LFA-1
ligand, immunoglobulin fold; HET: NAG; 2.10A {Homo
sapiens} SCOP: b.1.1.3 b.1.1.4 PDB: 1ic1_A* 1d3l_A
1d3e_I 1d3i_I 3tcx_A
Length = 185
Score = 49.7 bits (118), Expect = 4e-07
Identities = 24/140 (17%), Positives = 46/140 (32%), Gaps = 13/140 (9%)
Query: 77 EPSDATVLSGSVVEFVCRVGGDPLPTILWRRDDGKMPTGRAKILDD----RSLQIENVGP 132
PS + G V C D + P + ++L + ++ NV
Sbjct: 5 SPSKVILPRGGSVLVTCSTSCDQPKLLGIE-----TPLPKKELLLPGNNRKVYELSNV-- 57
Query: 133 QDEGLYICDVENLVGSISLRASLTVHLLRDDFRAEPKDTRVASGETALLECGPPKGQPEP 192
Q++ +C G + + LTV+ + P + G+ L C G P
Sbjct: 58 QEDSQPMCYSNCPDGQSTAKTFLTVYWTPERVELAPLPSWQPVGKQLTLRCQVEGGAPRA 117
Query: 193 --TLHWKKNGQFIDLESSKS 210
T+ + + + E +
Sbjct: 118 QLTVVLLRGEKELKREPAVG 137
>1uen_A KIAA0343 protein; immunoglobulin-like beta-sandwich fold,
fibronectin type III, NG-CAM related cell adhesion
molecule, structural genomics; NMR {Homo sapiens} SCOP:
b.1.2.1
Length = 125
Score = 48.2 bits (115), Expect = 4e-07
Identities = 18/104 (17%), Positives = 29/104 (27%), Gaps = 14/104 (13%)
Query: 411 GPPAAPVILNTTRGSVTLGWGEP---EPRGGGVAPVIGYTVEYFSSDLQTGWVVAAHRI- 466
P + + W RG + GY + Y+ + +
Sbjct: 16 VAPGNVRVNVVNSTLAEVHWDPVPLKSIRG----HLQGYRIYYWKTQSSSKRNRRHIEKK 71
Query: 467 ------TSTSITVSDLKPDTSYMFIVRAENSHGLGIPSPVSPIT 504
+ T + L+P + Y VR N G G SP
Sbjct: 72 ILTFQGSKTHGMLPGLEPFSHYTLNVRVVNGKGEGPASPDRVFN 115
>4doh_B Interleukin-20 receptor subunit beta; IL10 family cytokine receptor
complex, alpha helical cytokin beta sandwhich receptor
fold, signaling complex; HET: NAG; 2.80A {Homo sapiens}
Length = 206
Score = 49.7 bits (118), Expect = 5e-07
Identities = 17/127 (13%), Positives = 34/127 (26%), Gaps = 21/127 (16%)
Query: 376 ASSESGETSWSASLSVEPRPGPHAVHRMPDSGLFPGPPAAPVILNTTRGSVTLGWGEPEP 435
A+ S ++WS R P + + + L
Sbjct: 87 ATLGSQTSAWSILKHPFNRQST-----------ILTRPGMEITKDGFHLVIELED----- 130
Query: 436 RGGGVAPVIGYTVEYFSSDLQTGWVVAAHRITSTSITVSDLKPDTSYMFIVRAENSHGLG 495
+ P + V Y+ + V R + + ++P +Y + +G
Sbjct: 131 ----LGPQFEFLVAYWRREPGAEEHVKMVRSGGIPVHLETMEPGAAYCVKAQTFVK-AIG 185
Query: 496 IPSPVSP 502
S S
Sbjct: 186 RYSAFSQ 192
Score = 40.4 bits (94), Expect = 6e-04
Identities = 18/93 (19%), Positives = 25/93 (26%), Gaps = 3/93 (3%)
Query: 412 PPAAPVILNTTRGSVTLGWGEPEPRGGGVAPVIGYTVEYFSSDLQTGW--VVAAHRITST 469
P + + +T L W G V + Y EY S W
Sbjct: 8 PAPQQLSVLSTNMKHLLMWSPVIAPGETVYYSVEYQGEYESLYTSHIWIPSSWCSLTEGP 67
Query: 470 SITVSD-LKPDTSYMFIVRAENSHGLGIPSPVS 501
V+D + Y VRA S +
Sbjct: 68 ECDVTDDITATVPYNLRVRATLGSQTSAWSILK 100
>2cui_A Tenascin-X; fibronectin type III domain, extracellular matirx,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
b.1.2.1
Length = 112
Score = 47.7 bits (113), Expect = 5e-07
Identities = 13/99 (13%), Positives = 27/99 (27%), Gaps = 6/99 (6%)
Query: 410 PGPPAAPVILNTTRGSVTLGWGEPEPRGGGVAPVIGYTVEYFSSDLQTGWVVAAHRIT-- 467
+ + + T S+ L W P ++ + V S+ + +
Sbjct: 9 RPRLSQLSVTDVTTSSLRLNWEAPPGAFDSF--LLRFGVPSPSTLEPHPRPLLQRELMVP 66
Query: 468 --STSITVSDLKPDTSYMFIVRAENSHGLGIPSPVSPIT 504
S + DL+ T Y + + T
Sbjct: 67 GTRHSAVLRDLRSGTLYSLTLYGLRGPHKADSIQGTART 105
Score = 30.3 bits (68), Expect = 0.55
Identities = 14/90 (15%), Positives = 26/90 (28%), Gaps = 15/90 (16%)
Query: 540 STAVRITWEVSWGSVPQHLLDEARARLGTKVVNLRELIPTASTAVRITWEKYNMATVMNA 599
++++R+ WE G+ LL + + + +M
Sbjct: 22 TSSLRLNWEAPPGAFDSFLL---------------RFGVPSPSTLEPHPRPLLQRELMVP 66
Query: 600 ATTTSYTVTHLRKFTKYEFFLVPFFKTVEG 629
T S + LR T Y L +
Sbjct: 67 GTRHSAVLRDLRSGTLYSLTLYGLRGPHKA 96
>3up1_A Interleukin-7 receptor subunit alpha; cytokine receptor,
fibronectin type 3 fold, membrane and SOL glycosylation,
immune system; HET: NAG FUC NGA; 2.15A {Homo sapiens}
PDB: 3di3_B* 3di2_B*
Length = 223
Score = 49.4 bits (117), Expect = 8e-07
Identities = 19/95 (20%), Positives = 31/95 (32%), Gaps = 6/95 (6%)
Query: 413 PAAPVILN----TTRGSVTLGWGEPEPRGGGVAPVIGYTVEYFSSDLQTGWVVAAHRITS 468
P AP L+ + + + V ++ + V Y + W T
Sbjct: 113 PEAPFDLSVVYREGANDFVVTFNTSHLQKKYVKVLM-HDVAYRQEKDENKWTHVNLSSTK 171
Query: 469 TSITVSDLKPDTSYMFIVRAENSHGL-GIPSPVSP 502
++ L+P Y VR+ H G S SP
Sbjct: 172 LTLLQRKLQPAAMYEIKVRSIPDHYFKGFWSEWSP 206
>3v6o_A Leptin receptor; receptor-antibody complex, cytokine receptor,
antibody FAB F immunoglobulin fold; HET: NAG; 1.95A
{Homo sapiens}
Length = 206
Score = 48.9 bits (116), Expect = 9e-07
Identities = 18/96 (18%), Positives = 32/96 (33%), Gaps = 9/96 (9%)
Query: 412 PPAAPVILNTTR----GSVTLGWGEPEPRGGGVAPVIGYTVEYFSSDLQTGW-VVAAHRI 466
P P + G + + W +P + + + Y S + W + +
Sbjct: 109 KPLPPSSVKAEITINIGLLKISWEKPVFPENN----LQFQIRYGLSGKEVQWKMYEVYDA 164
Query: 467 TSTSITVSDLKPDTSYMFIVRAENSHGLGIPSPVSP 502
S S+++ Y VR + GLG S S
Sbjct: 165 KSKSVSLPVPDLCAVYAVQVRCKRLDGLGYWSNWSN 200
Score = 31.2 bits (70), Expect = 0.78
Identities = 22/156 (14%), Positives = 45/156 (28%), Gaps = 38/156 (24%)
Query: 464 HRITSTSITVSDLKPDTSYMFIVRAENSHGLGIPSPVSPITRTLGLNSLVPQHLLDEARA 523
+ + Y +R +S G + SP + + + L P
Sbjct: 64 QSDGFYECIFQPIFLLSGYTMWIRINHSLG-SLDSPPTCVLPDSVVKPLPPS-------- 114
Query: 524 RLGTKVVNLRELIPTASTAVRITWEVSWGSVPQHLLD-EARARLGTKVVNLRELIPTAST 582
+++ I ++I+WE P++ L + R L K
Sbjct: 115 -------SVKAEITINIGLLKISWEKPVF--PENNLQFQIRYGLSGK------------- 152
Query: 583 AVRITWEKYNMATVMNAATTTSYTVTHLRKFTKYEF 618
+ W+ Y + A + S ++ Y
Sbjct: 153 --EVQWKMYE----VYDAKSKSVSLPVPDLCAVYAV 182
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 51.0 bits (121), Expect = 1e-06
Identities = 44/313 (14%), Positives = 73/313 (23%), Gaps = 121/313 (38%)
Query: 20 IEPATRTNRVSISGDPGFDSRRSRSIFGSVLGAR-------------------GA-LSD- 58
+ AT T+ +S+ L R + D
Sbjct: 281 LSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDG 340
Query: 59 ----DQWKLIAKEALIKPFPIS----EPSDA-------TVLSGSVVEFVCRVGGDPLPT- 102
D WK + + L S EP++ +V S +PT
Sbjct: 341 LATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSA----------HIPTI 390
Query: 103 ---ILWRRDDGKMPTGRAKILDDRSLQIENVGPQDEGLYICDVENLVGSISLRASLTVHL 159
++W L SL + E ++
Sbjct: 391 LLSLIWFDVIKSDVMVVVNKLHKYSLVEKQ---PKESTI-----------------SIPS 430
Query: 160 LRDDFRAEPKDTRVASGETAL----------LECGPPKGQPEPTL----------HWKK- 198
+ + + + ++ E AL + P L H K
Sbjct: 431 IYLELKVKLEN------EYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNI 484
Query: 199 -NGQFIDLESSKSLDLSRRTLGWL----RVRPLYWNVARPRANLNP------RYIGRKMA 247
+ + + L LD +L R WN + N YI
Sbjct: 485 EHPERMTLFRMVFLDFR-----FLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICD--- 536
Query: 248 SLLIWNHPRVNRL 260
N P+ RL
Sbjct: 537 -----NDPKYERL 544
>3d85_D IL-12B, interleukin-12 subunit P40, cytotoxic lymphocyte; FAB,
immune system/cytokine complex; 1.90A {Homo sapiens}
SCOP: b.1.1.4 b.1.2.1 b.1.2.1 PDB: 3d87_B* 3duh_A*
1f42_A* 1f45_A* 3hmx_A* 3qwr_A*
Length = 306
Score = 49.7 bits (117), Expect = 1e-06
Identities = 40/350 (11%), Positives = 79/350 (22%), Gaps = 63/350 (18%)
Query: 159 LLRDDFRAEPKDTRVASGETALLECGPPKGQPEPTLHWKKNGQFIDLESSKSLDLSRRTL 218
L +D + E A GE +L C E + W + L S K+L + +
Sbjct: 4 LKKDVYVVELDWYPDAPGEMVVLTCD---TPEEDGITWTLDQSSEVLGSGKTLTIQVKEF 60
Query: 219 GWLRVRPLY-----WNVARPRANLNPRYIGRKMASLLIWNHPRVNRLSCFAEGSPLP-SV 272
G + + + + I L C A+ +
Sbjct: 61 GDAGQYTCHKGGEVLSHSLLLLHKKEDGIWSTDILKDQKEPKNKTFLRCEAKNYSGRFTC 120
Query: 273 FWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQV 332
+W S L F + + G A S +
Sbjct: 121 WWLTTISTDLTFS---VKSSRGSSDPQGVTCGAATLSAERVRGDNKEYEYSVECQEDSAC 177
Query: 333 REFCVLPKGTFTLGQPNLATGNSDLRRIACDLRETDSGLYTCTASSESGETSWSASLSVE 392
E+ A + +++S +
Sbjct: 178 PAA-----------------------------EESLPIEVMVDAVHKLKYEQYTSSFFIR 208
Query: 393 PRPGPHAVHRMPDSGLFPGPPAAPVILNTTRGSVTLGWGEPEPRGGGVAPVIGYTVEY-- 450
P + + V + W P+ P +++ +
Sbjct: 209 DIIKPDPPKNL------------QLKPLKNSRQVEVSWEYPDT---WSTPHSYFSLTFCV 253
Query: 451 -FSSDLQTGWVVAAHRITSTSITVSDLKPDTSYMFIVRAENSHGLGIPSP 499
+ T T + + + VRA++ + S
Sbjct: 254 QVQGKSKREKKD----RVFTDKTSATVICRKNASISVRAQDRYYSSSWSE 299
Score = 40.9 bits (94), Expect = 9e-04
Identities = 30/152 (19%), Positives = 38/152 (25%), Gaps = 9/152 (5%)
Query: 69 LIKPFPISEPSDATVLSGSVVEFVCRVGGDPLPTILWRRDDGKMPTGRAKILDDRSLQIE 128
L K + E G +V C I W D G ++L I+
Sbjct: 4 LKKDVYVVELDWYPDAPGEMVVLTC--DTPEEDGITWTLDQSSEVLGSG-----KTLTIQ 56
Query: 129 NVGPQDEGLYICDVENLVGSISLRASLTVHLLRDDFRAEPKDTRVASGETALLECGPPKG 188
D G Y C V S SL L + + + L C
Sbjct: 57 VKEFGDAGQYTCHKGGEVLSHSL--LLLHKKEDGIWSTDILKDQKEPKNKTFLRCEAKNY 114
Query: 189 QPEPTLHWKKNGQFIDLESSKSLDLSRRTLGW 220
T W S KS S G
Sbjct: 115 SGRFTCWWLTTISTDLTFSVKSSRGSSDPQGV 146
>4doh_R Interleukin-20 receptor subunit alpha; IL10 family cytokine
receptor complex, alpha helical cytokin beta sandwhich
receptor fold, signaling complex; HET: NAG; 2.80A {Homo
sapiens}
Length = 221
Score = 48.7 bits (115), Expect = 1e-06
Identities = 34/214 (15%), Positives = 56/214 (26%), Gaps = 36/214 (16%)
Query: 410 PGPPAAP--VILNTTRGSVTLGWGEPEPRGGGVAPVIGYTVEYFSSDLQTGWVVAAHR-- 465
G P + + L W PE G + YTV+YF + + R
Sbjct: 6 SGGLPKPANITFLSINMKNVLQWTPPEGLQG---VKVTYTVQYFIYGQKKWLNKSECRNI 62
Query: 466 -ITSTSITVSDLKPDTSYMFIVRAENSHGLGIPSPVSPITRTLGLNSLVPQHLLDEARAR 524
T ++ + Y VRA + L P+ L
Sbjct: 63 NRTYCDLSAETSDYEHQYYARVRAIWGTKCSKWAESGRFYPFLETQIGPPEVALTT---- 118
Query: 525 LGTKVVNLRELIPTASTAVRITWEVSWGSVPQHLLDEARARLGTKVVNLRELIPTASTAV 584
S +V +T W P V+++++ V
Sbjct: 119 ------------DEKSISVVLTAPEKWKRNP-----------EDLPVSMQQIYSNLKYNV 155
Query: 585 RITWEKYNMATVMNAATTTSYTVTHLRKFTKYEF 618
+ + T T + +T L T Y
Sbjct: 156 SV-LNTKSNRTWSQCVTNHTLVLTWLEPNTLYCV 188
Score = 41.8 bits (97), Expect = 3e-04
Identities = 22/138 (15%), Positives = 42/138 (30%), Gaps = 7/138 (5%)
Query: 372 YTCTASSESGETSWSASLSVEPRPGPHAVHRMPDSGLFPGPPAAPVILNTTRGSVTLGWG 431
Y + G + S P P+ L + V+L
Sbjct: 80 YYARVRAIWGTKCSKWAESGRFYPFLETQIGPPEVALTTDEKSISVVLTAPE-KWKRNPE 138
Query: 432 EPEPRGGGVAPVIGYTVEYFSSDLQTGWVVAAHRITSTSITVSDLKPDTSYMFIVRAENS 491
+ + + Y V ++ W +T+ ++ ++ L+P+T Y V +
Sbjct: 139 DLPVSMQQIYSNLKYNVSVLNTKSNRTWSQ---CVTNHTLVLTWLEPNTLYCVHVESFVP 195
Query: 492 HGLGIPSPVSPI--TRTL 507
G + S RTL
Sbjct: 196 -GPPRRAQPSEKQCARTL 212
>3lqm_A Interleukin-10 receptor subunit beta; IL-10R2, common chain,
cytokine, IL-10, IL-22, IL- 28, IL-29, disulfide bond,
glycoprotein, membrane; 2.14A {Homo sapiens}
Length = 201
Score = 48.2 bits (114), Expect = 2e-06
Identities = 28/207 (13%), Positives = 60/207 (28%), Gaps = 39/207 (18%)
Query: 412 PPAAPVILNTTRGSVTLGWGEPEPRGGGVAPVIGYTVEYFSSDLQTGWVVAAHRITSTSI 471
PP V +N+ L W P G + +T +Y S + + + T T
Sbjct: 3 PPPENVRMNSVNFKNILQWESPAFAKGQL----TFTAQYLSYRIFQDKCM---QTTLTEC 55
Query: 472 TVSDLKPDTSYMFIVRAENSHGLGIPSPVSPITRTLGLNSLVPQHLLDEARARLGTKVVN 531
S L + VRAE + S IT + ++ +G +
Sbjct: 56 DFSSLSKYGDHTLRVRAEFADE---HSDWVQITFSPVDDT------------IIGPPGMQ 100
Query: 532 LRELIPTASTAVRITWEVSWGSVPQHLLDEARARLGTKVVNLRELIPTASTAVRITWEKY 591
+ + + + + + ++ + + + V+ W++
Sbjct: 101 VE----VLADCLHMRFLAPK------------IENEYETWTMKNVYNSWTYNVQY-WKQG 143
Query: 592 NMATVMNAATTTSYTVTHLRKFTKYEF 618
+ +L +T Y
Sbjct: 144 TDEKFQITPQYDFEVLRNLEPWTTYCV 170
Score = 44.3 bits (104), Expect = 4e-05
Identities = 18/119 (15%), Positives = 35/119 (29%), Gaps = 14/119 (11%)
Query: 397 PHAVHRMPDSGLFPGPPAAPVILNTTRGSVTLGWGEPEPRGGG-------VAPVIGYTVE 449
+ P GPP + + + + + P+ V Y V+
Sbjct: 81 WVQITFSPVDDTIIGPPG--MQVEVLADCLHMRFLAPKIENEYETWTMKNVYNSWTYNVQ 138
Query: 450 YFSSDLQTGWVVAAHRITSTSITVSDLKPDTSYMFIVRA--ENSHGLGIPSPVSPITRT 506
Y+ + + + +L+P T+Y VR + + G S T
Sbjct: 139 YWKQGTDEKFQI---TPQYDFEVLRNLEPWTTYCVQVRGFLPDRNKAGEWSEPVCEQTT 194
>2b5i_B Interleukin-2 receptor beta chain; four-helix bundle, fibronectin
domain, cytokine-cytokine REC complex; HET: NAG; 2.30A
{Homo sapiens} SCOP: b.1.2.1 b.1.2.1 PDB: 3qaz_B*
2erj_B*
Length = 214
Score = 48.2 bits (114), Expect = 2e-06
Identities = 27/155 (17%), Positives = 43/155 (27%), Gaps = 17/155 (10%)
Query: 362 CDLRETDSGLYTCTASSESGETSW-----SASLSVEPRPGPHAVHRM-----PDSGLFPG 411
C+L + C + ++ +L V R G P L
Sbjct: 48 CELLPVSQASWACNLILGAPDSQKLTTVDIVTLRVLCREGVRWRVMAIQDFKPFENLRLM 107
Query: 412 PPAAPVILNTTRGSVTLGWGEPEPRGGGVAPVIGYTVEYFSSDLQTGWVVAAHRI---TS 468
P + +++ + W + + + S W A
Sbjct: 108 APISLQVVHVETHRCNISWEISQA-SHYFERHLEFEARTLSPG--HTWEEAPLLTLKQKQ 164
Query: 469 TSITVSDLKPDTSYMFIVRAENSHGL-GIPSPVSP 502
I + L PDT Y F VR + G SP S
Sbjct: 165 EWICLETLTPDTQYEFQVRVKPLQGEFTTWSPWSQ 199
>3se4_A Interferon alpha/beta receptor 1; type I interferon signaling
complex, extracellular space, IM system receptor; HET:
NAG; 3.50A {Homo sapiens} PDB: 3se3_A*
Length = 414
Score = 49.2 bits (116), Expect = 3e-06
Identities = 23/122 (18%), Positives = 37/122 (30%), Gaps = 9/122 (7%)
Query: 387 ASLSVEPRPGPHAVHRMPDSGLFPGPPAAPVILNTTRGSVTLGWGEPEPRGGGVAP---V 443
AS + + F PP + + S + G P+ G
Sbjct: 287 ASDGNNTSFWSEEIKFDTEIQAFLLPPV--FNIRSLSDSFHIYIGAPKQSGNTPVIQDYP 344
Query: 444 IGYTVEYFSSDLQTGWVVAAHRITSTSITVSDLKPDTSYMFIVRAENSHG-LGIPSPVSP 502
+ Y + ++ + + T +TV +LKP T Y RA L S S
Sbjct: 345 LIYEIIFWENTSNAERKI---IEKKTDVTVPNLKPLTVYCVKARAHTMDEKLNKSSVFSD 401
Query: 503 IT 504
Sbjct: 402 AV 403
Score = 43.8 bits (102), Expect = 1e-04
Identities = 34/237 (14%), Positives = 62/237 (26%), Gaps = 38/237 (16%)
Query: 385 WSASLSVEPRPGPHAVHRMPDSGLFPGPPAAPVILNTTRGSVTLGWGEP-EPRGGGVAPV 443
+A L+ VH + + PP + ++ + L W V +
Sbjct: 181 KAALLTSWKIGVYSPVHCIKTTVENELPPPENIEVSVQNQNYVLKWDYTYANMTFQVQWL 240
Query: 444 IGYTVEYFSSDLQTG-WVVAAHRITSTSITVSD-LKPDTSYMFIVRAENSHGLGIPSPVS 501
+ + L + + +T + Y+ V+A + + S
Sbjct: 241 HAFLKRNPGNHLYKWKQIPDCENVKTTQCVFPQNVFQKGIYLLRVQASDGNNTSFWSEEI 300
Query: 502 PITRTLGLNSLVPQHLLDEARARLGTKVVNLRELIPTASTAVRITWEVSWGSVPQHLLDE 561
T L+P + + S + I G+ P
Sbjct: 301 KFD-TEIQAFLLPPVFNIRSLSD---------------SFHIYIGAPKQSGNTPV----- 339
Query: 562 ARARLGTKVVNLRELIPTASTAVRITWEKYNMATVMNAATTTSYTVTHLRKFTKYEF 618
+ L I I WE + A T TV +L+ T Y
Sbjct: 340 ------IQDYPLIYEI--------IFWENTSNAERKIIEKKTDVTVPNLKPLTVYCV 382
Score = 36.1 bits (82), Expect = 0.028
Identities = 11/85 (12%), Positives = 27/85 (31%), Gaps = 7/85 (8%)
Query: 412 PPAAPVILNTTRGSVTLGWGEPEPRGGGVAPVIGYTVEYFSSDLQTGWVVAAHR---ITS 468
V ++ + L W + G V ++ +Y + + ++ + T
Sbjct: 9 KSPQKVEVDIIDDNFILRWNRSDESVGNV----TFSFDYQKTGMDNWIKLSGCQNITSTK 64
Query: 469 TSITVSDLKPDTSYMFIVRAENSHG 493
+ + L +RAE +
Sbjct: 65 CNFSSLKLNVYEEIKLRIRAEKENT 89
Score = 32.7 bits (73), Expect = 0.36
Identities = 28/247 (11%), Positives = 61/247 (24%), Gaps = 41/247 (16%)
Query: 372 YTCTASSESGETSWSASLSVEPRPGPHAVHRMPDSGLFPGPPAAPVILNTTRGSVTLGWG 431
+E TS S P A P+ L A + ++
Sbjct: 78 IKLRIRAEKENTS-SWYEVDSFTPFRKAQIGPPEVHLEAEDKAIVIHIS--------PGT 128
Query: 432 EPEPRGGGVAPVIGYTVEYFSSDLQTGWVVAAHRITSTSITVSDLKPDTSYMFIVRAENS 491
+ Y++ + + + + + L P+T+Y V+A
Sbjct: 129 KDSVMWALDGLSFTYSLVIWKNSSGVEERI---ENIYSRHKIYKLSPETTYCLKVKAALL 185
Query: 492 HGLGIPSPVSPITRTLGLNSLVPQHLLDEARARLGTKVVNLRELIPTASTAVRITWEVSW 551
I + + +P E + V+ W+ ++
Sbjct: 186 TSWKIGVYSPVHCIKTTVENELPPPENIEVSVQNQNYVL---------------KWDYTY 230
Query: 552 GSVPQHLLDEARARLGTKVVNLRELIPTASTAVRITWEKYNMATVMNAATTTSYTVTHLR 611
++ +V L + W++ N TT ++
Sbjct: 231 ANM------------TFQVQWLHAFLKRNPGNHLYKWKQIP--DCENVKTTQCVFPQNVF 276
Query: 612 KFTKYEF 618
+ Y
Sbjct: 277 QKGIYLL 283
>1eer_B Epobp, erythropoietin receptor; signal transduction, hematopoietic
cytokine, cytokine receptor class 1, complex
(cytokine/receptor); 1.90A {Homo sapiens} SCOP: b.1.2.1
b.1.2.1 PDB: 1cn4_A 2jix_B 1eba_A* 1ern_A 1ebp_A
Length = 227
Score = 47.4 bits (112), Expect = 4e-06
Identities = 33/166 (19%), Positives = 47/166 (28%), Gaps = 19/166 (11%)
Query: 354 NSDLRRIACDLRETDSGL---YTCTASSESGETSWSASLSVEPRPGPHAVHRMPDSGLFP 410
R C L D+ ++ SG + + + A
Sbjct: 76 ARGAVRFWCSLPTADTSSFVPLELRVTAASGAPRYHRVIHINEVVLLDA----------- 124
Query: 411 GPPAAPVILNTTRGSVTLGWGEPEPRGGGVAPVIGYTVEYFSSDLQTGWVVAAHRITSTS 470
P L G V L W P P + I Y V+ + T
Sbjct: 125 -PVGLVARLADESGHVVLRW-LP-PPETPMTSHIRYEVDVSAGQGAGSVQRVEILEGRTE 181
Query: 471 ITVSDLKPDTSYMFIVRAENSHGL--GIPSPVSPITRTLGLNSLVP 514
+S+L+ T Y F VRA + G S S L + L P
Sbjct: 182 CVLSNLRGRTRYTFAVRARMAEPSFGGFWSEWSEPVSLLTPSDLDP 227
>2b5i_C Cytokine receptor common gamma chain; four-helix bundle,
fibronectin domain, cytokine-cytokine REC complex; HET:
NAG; 2.30A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 PDB:
3bpl_C* 3qb7_C* 3qaz_C*
Length = 199
Score = 46.7 bits (110), Expect = 5e-06
Identities = 14/96 (14%), Positives = 26/96 (27%), Gaps = 10/96 (10%)
Query: 410 PGPPAAPVILNTTRGSVTLGWGEPEPRGGGVAPVIGYTVEYFSSDLQTGWVVAAHRITST 469
P P + + + L W + + V+Y +D W
Sbjct: 99 PWAPENLTLHKLSESQLELNWNNRFL-----NHCLEHLVQY-RTDWDHSWTEQ-SVDYRH 151
Query: 470 SITVSDLKPDTSYMFIVRAENSHGL---GIPSPVSP 502
++ + Y F VR+ + S S
Sbjct: 152 KFSLPSVDGQKRYTFRVRSRFNPLCGSAQHWSEWSH 187
>1xiw_A T-cell surface glycoprotein CD3 epsilon chain; CD3-epsilon,
CD3-delta, UCHT1-SCFV, immunoglobulin fold,
antibody-antigen complex; 1.90A {Homo sapiens} SCOP:
b.1.1.4
Length = 105
Score = 44.8 bits (105), Expect = 5e-06
Identities = 14/68 (20%), Positives = 24/68 (35%), Gaps = 6/68 (8%)
Query: 85 SGSVVEFVCRVGGDPLPTILWRRDDGKMPTG---RAKILDDRSLQIENVG-PQDEGLYIC 140
SG+ V C P ILW+ +D + + D+ L ++ + G Y+C
Sbjct: 20 SGTTVILTCPQ--YPGSEILWQHNDKNIGGDEDDKNIGSDEDHLSLKEFSELEQSGYYVC 77
Query: 141 DVENLVGS 148
Sbjct: 78 YPRGSKPE 85
Score = 31.3 bits (70), Expect = 0.23
Identities = 11/54 (20%), Positives = 17/54 (31%), Gaps = 4/54 (7%)
Query: 161 RDDFRAEPKDTRVASGETALLECGPPKGQPEPTLHWKKNGQFIDLESSKSLDLS 214
P + SG T +L C P + W+ N + I + S
Sbjct: 7 MGGITQTPYKVSI-SGTTVILTC---PQYPGSEILWQHNDKNIGGDEDDKNIGS 56
>1olz_A Semaphorin 4D; developmental protein, CD100, beta-propeller, PSI
domain, IG-like domain, extracellular receptor,
neurogenesis; 2.0A {Homo sapiens} SCOP: b.1.1.4
b.69.12.1 g.16.2.1 PDB: 3ol2_A*
Length = 663
Score = 48.6 bits (114), Expect = 6e-06
Identities = 21/191 (10%), Positives = 52/191 (27%), Gaps = 4/191 (2%)
Query: 8 NHAHPMSSPRAEIEPATRTNRVSISGDPGFDSRRSRSIFGSVLGARGALSDDQWKLIAKE 67
+++ + +P A ++ DP + ++ ++
Sbjct: 470 SNSGVVQAPLAFCGKHGTCEDCVLARDPYCAWSPPTATCVALHQTESPSRGLIQEMSGDA 529
Query: 68 ALIKPFPISEPSDATVLSGSVVEFVCRVGGDPLPTILWRRDDGKMP--TGRAKILDDRSL 125
++ G E C L + W+ +G + + + ++ ++L
Sbjct: 530 SVCPDKSKGSYRQHFFKHGGTAELKCSQKS-NLARVFWKFQNGVLKAESPKYGLMGRKNL 588
Query: 126 QIENVGPQDEGLYICD-VENLVGSISLRASLTVHLLRDDFRAEPKDTRVASGETALLECG 184
I N+ D G+Y C E + + L ++ +T
Sbjct: 589 LIFNLSEGDSGVYQCLSEERVKNKTVFQVVAKHVLEVKVVPKPVVAPTLSVVQTEGSRIA 648
Query: 185 PPKGQPEPTLH 195
H
Sbjct: 649 TKVLVASTKHH 659
Score = 45.1 bits (105), Expect = 6e-05
Identities = 15/77 (19%), Positives = 26/77 (33%), Gaps = 5/77 (6%)
Query: 252 WNHPRVNRLSCFAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAG 311
+ H L C + S L VFW + + + L I + + D+G
Sbjct: 545 FKHGGTAELKCSQK-SNLARVFWKFQNGVLK----AESPKYGLMGRKNLLIFNLSEGDSG 599
Query: 312 FFVCSALSVAGSTTVRA 328
+ C + + TV
Sbjct: 600 VYQCLSEERVKNKTVFQ 616
Score = 31.3 bits (69), Expect = 1.2
Identities = 12/69 (17%), Positives = 24/69 (34%), Gaps = 7/69 (10%)
Query: 363 DLRETDSGLYTCTASSESGETSWSASLSVEPRPGPHAVHRMPDSGLFPGP------PAAP 416
+L E DSG+Y C + E + + + V + + A
Sbjct: 592 NLSEGDSGVYQCLS-EERVKNKTVFQVVAKHVLEVKVVPKPVVAPTLSVVQTEGSRIATK 650
Query: 417 VILNTTRGS 425
V++ +T+
Sbjct: 651 VLVASTKHH 659
>2erj_C Cytokine receptor common gamma chain; immune system-cytok complex;
HET: NAG FUC BMA; 3.00A {Homo sapiens} SCOP: b.1.2.1
b.1.2.1
Length = 247
Score = 46.3 bits (109), Expect = 9e-06
Identities = 14/96 (14%), Positives = 26/96 (27%), Gaps = 10/96 (10%)
Query: 410 PGPPAAPVILNTTRGSVTLGWGEPEPRGGGVAPVIGYTVEYFSSDLQTGWVVAAHRITST 469
P P + + + L W + + V+Y +D W
Sbjct: 137 PWAPENLTLHKLSESQLELNWNNRFL-----NHCLEHLVQY-RTDWDHSWTEQ-SVDYRH 189
Query: 470 SITVSDLKPDTSYMFIVRAENSHGL---GIPSPVSP 502
++ + Y F VR+ + S S
Sbjct: 190 KFSLPSVDGQKRYTFRVRSRFNPLCGSAQHWSEWSH 225
Score = 31.7 bits (71), Expect = 0.59
Identities = 27/258 (10%), Positives = 63/258 (24%), Gaps = 66/258 (25%)
Query: 370 GLYTCTASSESGETSWSASLSVEPRPGPHAVHRMPDSGLFPGPPAAPVILNTTRGSVTLG 429
L T + +G +A + P + P +
Sbjct: 4 SLLNTTILTPNGNEDTTADFFLTTMPTDS-------LSVSTLPLPEVQCFVFNVEYMNCT 56
Query: 430 WGEPEPRGGGVAPVIGYTVEYFSSDLQTGWV-----VAAHRITSTSITVSDLKPDTSYMF 484
W T+ Y+ + V ++ + + F
Sbjct: 57 WQSSSEPQPT-----NLTLHYWYKNSDNDKVQKCSHYLFSEEITSGCQLQKKEIHLYQTF 111
Query: 485 IVRAENSHGLGIPSPVSPITRTLGLNSLV----PQHLLDEARARLGTKVVNLRELIPTAS 540
+V+ ++ P T+ L L +LV P++L L +
Sbjct: 112 VVQLQDPRE-----PRRQATQMLKLQNLVIPWAPENL----------------TLHKLSE 150
Query: 541 TAVRITWEVSWGSVPQHLLDEARARLGTKVVNLRELIPTASTAVRITWEKYNMATVMNAA 600
+ + + W + + L V+ + + T +
Sbjct: 151 SQLELNWNNRFLN--HCLEHL----------------------VQYRTDWDHSWTEQSVD 186
Query: 601 TTTSYTVTHLRKFTKYEF 618
+++ + +Y F
Sbjct: 187 YRHKFSLPSVDGQKRYTF 204
>3n06_B PRL-R, prolactin receptor; PH dependence, hematopoietic cytokine,
hormone-hormone recep complex; 2.00A {Homo sapiens} PDB:
3mzg_B 3n0p_B 3ncb_B 1bp3_B 3d48_R 3nce_B 3ncc_B 3ncf_B
3ew3_B 3npz_B 1f6f_B 2lfg_A
Length = 210
Score = 45.5 bits (107), Expect = 1e-05
Identities = 15/96 (15%), Positives = 26/96 (27%), Gaps = 7/96 (7%)
Query: 404 PDSGLFPGPPAAPVI----LNTTRGSVTLGWGEPEP-RGGGVAPVIGYTVEYFSSDLQTG 458
+ P PP + + + + W P + Y +
Sbjct: 97 VTYIVQPDPPLELAVEVKQPEDRKPYLWIKWSPPTLIDLKTGWFTLLYEIRLKPEKAAEW 156
Query: 459 WVVAAHRITSTSITVSDLKPDTSYMFIVRAENSHGL 494
+ A T + L P Y+ VR + HG
Sbjct: 157 EIHFA--GQQTEFKILSLHPGQKYLVQVRCKPDHGY 190
Score = 35.8 bits (82), Expect = 0.023
Identities = 36/213 (16%), Positives = 59/213 (27%), Gaps = 41/213 (19%)
Query: 412 PPAAPVIL---NTTRGSVTLGWGEPEPRGGGVAPVIGYTVEYFSSDLQTGWVVAAHRI-- 466
PP P I + + + T W P GG Y++ Y +
Sbjct: 3 PPGKPEIFKCRSPNKETFTCWW-RPGTDGG---LPTNYSLTYHREGETLMHECPDYITGG 58
Query: 467 -TSTSITVSDLKPDTSYMFIVRAENSHGLGIPSPVSPITRTLGLNSLVPQHLLDEARARL 525
S +Y+ +V A N G + + T + P L
Sbjct: 59 PNSCHFGKQYTSMWRTYIMMVNATNQMGSSFSDELY-VDVTYIVQPDPPLEL-------- 109
Query: 526 GTKVVNLRELIPTASTAVRITWEVSWGSVPQHLLDEARARLGTKVVNLRELIPTASTAVR 585
V +++ + I W P L+D L+ T +R
Sbjct: 110 ---AVEVKQPEDR-KPYLWIKWS------PPTLID------------LKTGWFTLLYEIR 147
Query: 586 ITWEKYNMATVMNAATTTSYTVTHLRKFTKYEF 618
+ EK + A T + + L KY
Sbjct: 148 LKPEKAAEWEIHFAGQQTEFKILSLHPGQKYLV 180
>1axi_B HGHBP, growth hormone receptor; complex (hormone-receptor), complex
(hormone-receptor) compl; 2.10A {Homo sapiens} SCOP:
b.1.2.1 b.1.2.1 PDB: 1a22_B 1kf9_B 1hwg_B 1hwh_B 3hhr_B
2aew_A
Length = 236
Score = 45.6 bits (107), Expect = 2e-05
Identities = 27/134 (20%), Positives = 43/134 (32%), Gaps = 12/134 (8%)
Query: 372 YTCTASSESGETSWSASLSVEPRPGPHAVHRMPDSGLFPGPPAAPVILNTTRGSVTLGWG 431
Y +S G T SV+ P + + L + + W
Sbjct: 107 YCIKLTSNGG-TVDEKCFSVDEIVQPDPPIALNWTLLNVSLTGIH-------ADIQVRWE 158
Query: 432 EPE-PRGGGVAPVIGYTVEYFSSDLQTGWVVAAHRITSTSITVSDLKPDTSYMFIVRAEN 490
P V+ Y ++Y + +T W + I +TS+ V LK D Y VR+
Sbjct: 159 APRNADIQKGWMVLEYELQYKEVN-ETKWKMM-DPILTTSVPVYSLKVDKEYEVRVRS-K 215
Query: 491 SHGLGIPSPVSPIT 504
G S +
Sbjct: 216 QRNSGNYGEFSEVL 229
Score = 30.9 bits (69), Expect = 0.88
Identities = 28/246 (11%), Positives = 59/246 (23%), Gaps = 49/246 (19%)
Query: 383 TSWSASLSVEPRPGPHAVHRMPDSGLFPGPPAAPVILN---TTRGSVTLGWGEPEPRGGG 439
+ +A++ +V + GL P R + + W E G
Sbjct: 4 SEATAAILSRAPWSLQSV----NPGLKTNSSGEPKFTKCRSPERETFSCHW-TDEVHHGT 58
Query: 440 VAPVIGYTVEY---FSSDLQTGWVVAAHRITST----SITVSDLKPDTSYMFIVRAENSH 492
+ Y + + W +++ S Y + +
Sbjct: 59 KNEG-PIQLFYTRRNTQEWTQEWKECPDYVSAGENSCYFNSSFTSIAIPYCIKLTSNG-- 115
Query: 493 GLGIPSPVSPITRTLGLNSLVPQHLLDEARARLGTKVVNLRELIPTASTAVRITWEVSWG 552
G S + L+ + T + +V W
Sbjct: 116 GTVDEKCFSVDEIVQPDPPIALNW-----------------TLLNVSLTGIHADIQVRWE 158
Query: 553 SVPQHLLDEARARLGTKVVNLRELIPTASTAVRITWEKYNMATVMNAATTTSYTVTHLRK 612
+ + + L ++ + +M+ TTS V L+
Sbjct: 159 APRNADIQKGWMVLEYEL--------------QYKEVNETKWKMMDPILTTSVPVYSLKV 204
Query: 613 FTKYEF 618
+YE
Sbjct: 205 DKEYEV 210
>2zg1_A Sialic acid-binding IG-like lectin 5; siglec-5 inhibitory receptor,
two-domain structure, V-SET, C2-SET, IG-like domain,
6'-sialyllactose complex; HET: SIA; 2.70A {Homo sapiens}
PDB: 2zg3_A* 2zg2_A
Length = 214
Score = 44.8 bits (105), Expect = 3e-05
Identities = 32/164 (19%), Positives = 44/164 (26%), Gaps = 36/164 (21%)
Query: 73 FPISEPSDATVLSGSVVEFVCRV-------GGDPLPTILWRRDDGKMPT----------- 114
+ + TV G V C P + W RD
Sbjct: 2 YELQVQKSVTVQEGLCVLVPCSFSYPWRSWYSSPPLYVYWFRDGEIPYYAEVVATNNPDR 61
Query: 115 -------GRAKILDDR-----SLQIENVGPQDEGLYICDVENLVGSISLRASLTVHLLRD 162
GR ++L D SL I + +D G Y VE ++L
Sbjct: 62 RVKPETQGRFRLLGDVQKKNCSLSIGDARMEDTGSYFFRVERGRDVKYSYQQNKLNLEVT 121
Query: 163 DFRAEPK---DTRVASGETALLEC---GPPKGQPEPTLHWKKNG 200
+P + SG L C G + P T W N
Sbjct: 122 ALIEKPDIHFLEPLESGRPTRLSCSLPGSCEAGPPLTFSWTGNA 165
Score = 33.7 bits (76), Expect = 0.13
Identities = 26/161 (16%), Positives = 48/161 (29%), Gaps = 21/161 (13%)
Query: 14 SSPRAEIEPATRTNRVSISGDPGF--------DSRRSRS---IFGSVLGARGALSDDQWK 62
++P ++P T+ R + GD D+R + F G S Q K
Sbjct: 57 NNPDRRVKPETQ-GRFRLLGDVQKKNCSLSIGDARMEDTGSYFFRVERGRDVKYSYQQNK 115
Query: 63 LIAKEALIKPFPISEPSDATVLSGSVVEFVCRV----GGDPLPTILWRRDDGKMPTGRAK 118
L + + P + SG C + P T W +
Sbjct: 116 LNLEVTALIEKPDIHFL-EPLESGRPTRLSCSLPGSCEAGPPLTFSWTGNALSPLDPETT 174
Query: 119 ILDDRSLQIENVGPQDEG-LYICDVENLVGSISLRASLTVH 158
S P+D G C ++ ++ ++ ++
Sbjct: 175 R---SSELTLTPRPEDHGTNLTCQMKRQGAQVTTERTVQLN 212
Score = 30.6 bits (68), Expect = 1.1
Identities = 11/74 (14%), Positives = 18/74 (24%), Gaps = 8/74 (10%)
Query: 259 RLSCFAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSAL 318
L E P + WT L T+ L + ++ C
Sbjct: 146 SLPGSCEAGPPLTFSWTGNALSPL--------DPETTRSSELTLTPRPEDHGTNLTCQMK 197
Query: 319 SVAGSTTVRAFLQV 332
T +Q+
Sbjct: 198 RQGAQVTTERTVQL 211
>3g9v_A Interleukin 22 receptor, alpha 2; cytokine, cytokine receptor,
receptor, glycoprotein, polymorphism, secreted,
cytokine/cytokine receptor complex; 2.76A {Homo sapiens}
Length = 211
Score = 44.8 bits (105), Expect = 3e-05
Identities = 24/153 (15%), Positives = 38/153 (24%), Gaps = 26/153 (16%)
Query: 362 CDLRETDSGLYT-----CTASSESGETSWSASLSVEPRPGPHAVHRMPDSGLFPGPPAAP 416
CDL S + A+S + WS + P PP
Sbjct: 66 CDLTSETSDIQEPYYGRVRAASAGSYSEWSMTPRFTPWWETK-----------IDPPVMN 114
Query: 417 VILNTTRGSVTLGWGEPEPRGGGVAPV-------IGYTVEYFSSDLQTGWVVAAHRITST 469
+ V L R V + Y V ++ +
Sbjct: 115 ITQVNGSLLVILHAPNLPYRYQKEKNVSIEDYYELLYRVFIINNS--LEKEQKVYEGAHR 172
Query: 470 SITVSDLKPDTSYMFIVRAENSHGLGIPSPVSP 502
++ + L P +SY + L S S
Sbjct: 173 AVEIEALTPHSSYCVVAEIYQP-MLDRRSQRSE 204
Score = 42.5 bits (99), Expect = 1e-04
Identities = 15/87 (17%), Positives = 20/87 (22%), Gaps = 8/87 (9%)
Query: 412 PPAAP--VILNTTRGSVTLGWGEPEPRGGGVAPVIGYTVEY-FSSDLQTGWVVAAHRITS 468
P V + L W G Y V+Y Q
Sbjct: 7 ESLKPQRVQFQSRNFHNILQWQPGRALTG---NSSVYFVQYKIYGQRQWKNKEDCWGTQE 63
Query: 469 TS--ITVSDLKPDTSYMFIVRAENSHG 493
S +T Y VRA ++
Sbjct: 64 LSCDLTSETSDIQEPYYGRVRAASAGS 90
>2dle_A Receptor-type tyrosine-protein phosphatase ETA; protein-tyrosine
phosphatase ETA, R-PTP-ETA, HPTP ETA, protein-tyrosine
phosphatase receptor type J; NMR {Homo sapiens}
Length = 104
Score = 41.2 bits (96), Expect = 7e-05
Identities = 14/96 (14%), Positives = 25/96 (26%), Gaps = 8/96 (8%)
Query: 410 PGPPAAPVILNTTRGSVTLGWGEPEPRGGGVAPVIGYTVEYFSSDLQTGWVVAAHRITST 469
+N + S+TL W + YT + + + +
Sbjct: 8 AIQVFDVTAVNISATSLTLIWKVSDN-----ESSSNYTYKIHVAGETDSSNLNV---SEP 59
Query: 470 SITVSDLKPDTSYMFIVRAENSHGLGIPSPVSPITR 505
+ L+ T Y V G P + T
Sbjct: 60 RAVIPGLRSSTFYNITVCPVLGDIEGTPGFLQVHTP 95
>3r0n_A Poliovirus receptor-related protein 2; IG-domain, cell-adhesion
molecule, virus entry receptor, STR genomics,
PSI-biology; 1.30A {Homo sapiens}
Length = 128
Score = 41.9 bits (98), Expect = 7e-05
Identities = 12/54 (22%), Positives = 19/54 (35%), Gaps = 1/54 (1%)
Query: 105 WRRDDGKMPTGRAKILDDRSLQIENVGPQDEGLYICDVENL-VGSISLRASLTV 157
+ L D +L + + +DEG Y C+ GS+ L V
Sbjct: 75 FVSAKQSTGQDTEAELQDATLALHGLTVEDEGNYTCEFATFPKGSVRGMTWLRV 128
Score = 31.1 bits (70), Expect = 0.39
Identities = 19/68 (27%), Positives = 27/68 (39%), Gaps = 5/68 (7%)
Query: 270 PSVFWTQEGSQVLMFPGNAYGHLHVTQEG----TLRIQGVQKEDAGFFVCS-ALSVAGST 324
PS + GS+ L F T+ TL + G+ ED G + C A GS
Sbjct: 61 PSFPSPKPGSERLSFVSAKQSTGQDTEAELQDATLALHGLTVEDEGNYTCEFATFPKGSV 120
Query: 325 TVRAFLQV 332
+L+V
Sbjct: 121 RGMTWLRV 128
>3bpo_C Interleukin-13 receptor alpha-1 chain; IL4, IL13, IL4R, IL13R,
cytokine, glycoprotein, IM response, membrane,
phosphoprotein, secreted; HET: NAG; 3.00A {Homo sapiens}
PDB: 3bpn_C*
Length = 314
Score = 43.3 bits (101), Expect = 1e-04
Identities = 25/145 (17%), Positives = 44/145 (30%), Gaps = 21/145 (14%)
Query: 362 CDLRETDSGLYTCTASSESGETSWSASLSVEPRPGPHAVHRMPDSGLFPG----PPAAPV 417
C+ + + C+ + S SV+ +A P + P P P
Sbjct: 145 CENIFREGQYFGCSFDLTKVKDSSFEQHSVQIMVKDNAGKIKPSFNIVPLTSRVKPDPPH 204
Query: 418 ILNTT--RGSVTLGWGEPEPRGGGVAPVIGYTVEYFSSDLQTGWVVAAHRI--------- 466
I N + + + W P+ + Y VE +S +T V
Sbjct: 205 IKNLSFHNDDLYVQWENPQNFISRC---LFYEVEVNNSQTETHNVFYVQEAKCENPEFER 261
Query: 467 ---TSTSITVSDLKPDTSYMFIVRA 488
++ V + PDT +R
Sbjct: 262 NVENTSCFMVPGVLPDTLNTVRIRV 286
Score = 40.3 bits (93), Expect = 0.001
Identities = 15/139 (10%), Positives = 31/139 (22%), Gaps = 23/139 (16%)
Query: 412 PPAAPVILNTTRGSVTLGWGEPEPRGGGVAPVIGYTVEYFSSDLQTGWVVAAHRITSTSI 471
P + +V W PE ++ YFS +
Sbjct: 6 PVTNLSVSVENLCTVIWTWNPPEGASS------NCSLWYFSHFGDKQDKK--IAPETRRS 57
Query: 472 TVSDLKPDTSYMFIVRAENSHGLGIPSPVSPITRTLGLNSLVPQHLLDEARARLGTKVVN 531
L + + P + + + P + V
Sbjct: 58 IEVPLNERICLQVGSQCSTNES---EKPSILVEKCISPPEGDP-----------ESAVTE 103
Query: 532 LRELIPTASTAVRITWEVS 550
L+ + S ++ +W
Sbjct: 104 LQCIWHNLSY-MKCSWLPG 121
Score = 38.0 bits (87), Expect = 0.008
Identities = 29/247 (11%), Positives = 57/247 (23%), Gaps = 43/247 (17%)
Query: 376 ASSESGETSWSASLSVEPRPGPHAVHRMPDSGLFPGPPAAPVIL---NTTRGSVTLGWGE 432
+++ES + S + P G P +A L + W
Sbjct: 75 STNESEKPSILVEKCISPPEG--------------DPESAVTELQCIWHNLSYMKCSWLP 120
Query: 433 PEPRGGGVAPVIGYTVEYFSSDLQTGWVVAAHRITSTSITVSDLKPDTSYMFIVRAENSH 492
+ Y Q + + S ++ +K + V+
Sbjct: 121 GRNTSPDTNYTLYYWHRSLEKIHQCENIFREGQYFGCSFDLTKVKDSSFEQHSVQIMVKD 180
Query: 493 GLGIPSPVSPITRTLGLNSLVPQHLLDEARARLGTKVVNLRELIPTASTAVRITWEVSWG 552
G P I P H+ + + + + + WE
Sbjct: 181 NAGKIKPSFNIVPLTSRVKPDPPHIKN----------------LSFHNDDLYVQWENPQN 224
Query: 553 SVPQHLLDEARARLGTKVVNLRELIPTASTAVRITWEKYNMATVM-NAATTTSYTVTHLR 611
+ + L E V + + K N T+ + V +
Sbjct: 225 FISRCLFYE---------VEVNNSQTETHNVFYVQEAKCENPEFERNVENTSCFMVPGVL 275
Query: 612 KFTKYEF 618
T
Sbjct: 276 PDTLNTV 282
>3udw_C Poliovirus receptor; PVR tigit IGSF signal transduction immunology,
IGSF, cell SU receptor signalling, glycosylation,
membrane protein; HET: NAG; 2.90A {Homo sapiens}
Length = 118
Score = 41.0 bits (96), Expect = 1e-04
Identities = 20/111 (18%), Positives = 33/111 (29%), Gaps = 28/111 (25%)
Query: 75 ISEPSDATVLSGSVVEFVCRVGGDPLPT-----ILWRRDDGK--------------MPTG 115
+ P+ G V C + + + W R +
Sbjct: 4 VQAPTQVPGFLGDSVTLPCYLQVPNMEVTHVSQLTWARHGESGSMAVFHQTQGPSYSESK 63
Query: 116 RAKILDDR--------SLQIENVGPQDEGLYICDVENL-VGSISLRASLTV 157
R + + R SL++ + +DEG Y C GS S+ L V
Sbjct: 64 RLEFVAARLGAELRNASLRMFGLRVEDEGNYTCLFVTFPQGSRSVDIWLRV 114
Score = 31.7 bits (72), Expect = 0.19
Identities = 17/95 (17%), Positives = 33/95 (34%), Gaps = 22/95 (23%)
Query: 260 LSCFAEGSPLPS-----VFWTQEGSQVLMFPGNAYGHLHVTQEG---------------- 298
L C+ + + + W + G M + ++
Sbjct: 20 LPCYLQVPNMEVTHVSQLTWARHGESGSMAVFHQTQGPSYSESKRLEFVAARLGAELRNA 79
Query: 299 TLRIQGVQKEDAGFFVCS-ALSVAGSTTVRAFLQV 332
+LR+ G++ ED G + C GS +V +L+V
Sbjct: 80 SLRMFGLRVEDEGNYTCLFVTFPQGSRSVDIWLRV 114
>1eaj_A Coxsackie virus and adenovirus receptor; virus/viral protein
receptor, immunoglobulin V domain fold, symmetric dimer;
1.35A {Homo sapiens} SCOP: b.1.1.1 PDB: 1f5w_A 2j12_B
2j1k_A 2wbw_B* 2w9l_A* 1rsf_A 1jew_R 1kac_B 1p69_B
1p6a_B
Length = 126
Score = 40.6 bits (95), Expect = 2e-04
Identities = 12/49 (24%), Positives = 19/49 (38%), Gaps = 6/49 (12%)
Query: 115 GRAKILDDR------SLQIENVGPQDEGLYICDVENLVGSISLRASLTV 157
GR + S+ + N+ D G Y C V+ G + + L V
Sbjct: 75 GRVHFTSNDLKSGDASINVTNLQLSDIGTYQCKVKKAPGVANKKIHLVV 123
Score = 27.1 bits (60), Expect = 8.2
Identities = 12/52 (23%), Positives = 22/52 (42%), Gaps = 2/52 (3%)
Query: 340 KGTFTLGQPNLATGNSDLRRIACDLRETDSGLYTCTASSESGETSWSASLSV 391
KG +L +G++ + + +L+ +D G Y C G + L V
Sbjct: 74 KGRVHFTSNDLKSGDASIN-VT-NLQLSDIGTYQCKVKKAPGVANKKIHLVV 123
>3nvq_A Semaphorin-7A; beta-propeller, signaling, signaling protein-protein
binding; HET: NAG NDG; 2.40A {Homo sapiens}
Length = 590
Score = 43.1 bits (100), Expect = 3e-04
Identities = 16/99 (16%), Positives = 27/99 (27%), Gaps = 6/99 (6%)
Query: 219 GWLRVRPLYWNVARPRANLNPRYIGRKMASLLIWNHPRVNRLSCFAEGSPLPSVFWTQEG 278
R N A P + + LSC E S + W +
Sbjct: 479 SSERSVLQSINPAEPHKECPNPKPDKAPLQKVSLAPNSRYYLSCPME-SRHATYSWRHKE 537
Query: 279 SQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSA 317
+ + H + L I+ + + G + C A
Sbjct: 538 N-----VEQSCEPGHQSPNCILFIENLTAQQYGHYFCEA 571
Score = 40.4 bits (93), Expect = 0.002
Identities = 15/73 (20%), Positives = 22/73 (30%), Gaps = 3/73 (4%)
Query: 87 SVVEFVCRVGGDPLPTILWRRDDGKMPTG-RAKILDDRSLQIENVGPQDEGLYICD-VEN 144
S C + T WR + + + L IEN+ Q G Y C+ E
Sbjct: 516 SRYYLSCPME-SRHATYSWRHKENVEQSCEPGHQSPNCILFIENLTAQQYGHYFCEAQEG 574
Query: 145 LVGSISLRASLTV 157
+ L
Sbjct: 575 SYFREAQHWQLLP 587
Score = 28.8 bits (63), Expect = 6.3
Identities = 8/34 (23%), Positives = 11/34 (32%), Gaps = 1/34 (2%)
Query: 363 DLRETDSGLYTCTASSESGETSWSASLSVEPRPG 396
+L G Y C A E + + P G
Sbjct: 558 NLTAQQYGHYFCEA-QEGSYFREAQHWQLLPEDG 590
>3s98_A Interferon alpha/beta receptor 1; human, type I interferons,
receptor chain, ifnar1, fibronect III, type I interferon
receptor chain; HET: NAG; 1.90A {Homo sapiens}
Length = 306
Score = 42.2 bits (98), Expect = 3e-04
Identities = 15/119 (12%), Positives = 37/119 (31%), Gaps = 10/119 (8%)
Query: 387 ASLSVEPRPGPH-AVHRMPDSGLFPGPPAAPVILNTTRGSVTLGWGEPEPRGGGVAPVIG 445
A+L + G + VH + + PP + ++ + L W +
Sbjct: 178 AALLTSWKIGVYSPVHCIKTTVENELPPPENIEVSVQNQNYVLKWDYTYANMT---FQVQ 234
Query: 446 YTVEYFSS---DLQTGW--VVAAHRITSTSITVS-DLKPDTSYMFIVRAENSHGLGIPS 498
+ + + W + + +T ++ Y+ V+A + + S
Sbjct: 235 WLHAFLKRNPGNHLYKWKQIPDCENVKTTQCVFPQNVFQKGIYLLRVQASDGNNTSFWS 293
Score = 40.7 bits (94), Expect = 0.001
Identities = 27/171 (15%), Positives = 50/171 (29%), Gaps = 27/171 (15%)
Query: 362 CDLRETDSGLYTC-----TASSESGETSWSASLSVEPRPGPHAVHRMPDSGLFPGPPAAP 416
C+ +Y A E +SW S P GPP
Sbjct: 61 CNFSSLKLNVYEEIKLRIRAEKE-NTSSWYEVDSFTPFRKAQ-----------IGPPE-- 106
Query: 417 VILNTTRGSVTLGWGEPE---PRGGGVAPVIGYTVEYFSSDLQTGWVVAAHRITSTSITV 473
V L ++ + Y++ + + + + +
Sbjct: 107 VHLEAEDKAIVIHISPGTKDSVMWALDGLSFTYSLVIWKNSSGVEERI---ENIYSRHKI 163
Query: 474 SDLKPDTSYMFIVRAENSHG--LGIPSPVSPITRTLGLNSLVPQHLLDEAR 522
L P+T+Y V+A +G+ SPV I T+ P+++ +
Sbjct: 164 YKLSPETTYCLKVKAALLTSWKIGVYSPVHCIKTTVENELPPPENIEVSVQ 214
Score = 37.2 bits (85), Expect = 0.012
Identities = 27/213 (12%), Positives = 51/213 (23%), Gaps = 45/213 (21%)
Query: 410 PGPPAAPVILNTTRGSVTLGWGEPEPRGGGVAPVIGYTVEYFSSDLQTGW--VVAAHRIT 467
P V ++ + L W + G V ++ +Y + W + IT
Sbjct: 3 PLKSPQKVEVDIIDDNFILRWNRSDESVGNV----TFSFDYQKTG-MDNWIKLSGCQNIT 57
Query: 468 STS--ITVSDLKPDTSYMFIVRAENSHGLGIPSPVSPITRTLGLNSLVPQHLLDEARARL 525
ST + L +RAE S + A
Sbjct: 58 STKCNFSSLKLNVYEEIKLRIRAEK----ENTSSWYEVDSFTPFRKAQIGPPEVHLEAED 113
Query: 526 GTKVVNLRELIPTASTAVRITWEVSWGSVPQHLLDEARARLGTKVVNLRELIPTASTAVR 585
V+++ + T + W + S L
Sbjct: 114 KAIVIHI-----SPGTKDSVMWALDGLSFTYSL--------------------------- 141
Query: 586 ITWEKYNMATVMNAATTTSYTVTHLRKFTKYEF 618
+ W+ + + + + L T Y
Sbjct: 142 VIWKNSSGVEERIENIYSRHKIYKLSPETTYCL 174
>1ncn_A T lymphocyte activation antigen CD86; IG V, beta strands, immune
system; 2.70A {Homo sapiens} SCOP: b.1.1.1 PDB: 1i85_A
Length = 110
Score = 39.4 bits (92), Expect = 4e-04
Identities = 12/86 (13%), Positives = 25/86 (29%), Gaps = 23/86 (26%)
Query: 82 TVLSGSVVEFVCRVGGDPLP-----TILWRRDDGK---------------MP--TGRAKI 119
+ C+ + W+ + GR
Sbjct: 5 QAYFNETADLPCQFANSQNQSLSELVVFWQDQENLVLNEVYLGKEKFDSVHSKYMGRTSF 64
Query: 120 L-DDRSLQIENVGPQDEGLYICDVEN 144
D +L++ N+ +D+GLY C + +
Sbjct: 65 DSDSWTLRLHNLQIKDKGLYQCIIHH 90
Score = 28.7 bits (64), Expect = 2.2
Identities = 18/73 (24%), Positives = 29/73 (39%), Gaps = 17/73 (23%)
Query: 260 LSCFAEGSPLPS-----VFWTQEGSQVL--MFPGNA-YGHLH---------VTQEGTLRI 302
L C S S VFW + + VL ++ G + +H + TLR+
Sbjct: 14 LPCQFANSQNQSLSELVVFWQDQENLVLNEVYLGKEKFDSVHSKYMGRTSFDSDSWTLRL 73
Query: 303 QGVQKEDAGFFVC 315
+Q +D G + C
Sbjct: 74 HNLQIKDKGLYQC 86
>1uct_A Immunoglobulin alpha FC receptor; beta stands, immune system; 2.10A
{Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1ovz_A*
1ow0_C*
Length = 218
Score = 41.4 bits (97), Expect = 4e-04
Identities = 13/82 (15%), Positives = 24/82 (29%), Gaps = 1/82 (1%)
Query: 59 DQWKLIAKEALIKPFPISEPSDATVLSGSVVEFVCRVGGDPLPTILWRRDDGKMPTGRAK 118
D +L+ KPF +S ++ G + C P ++
Sbjct: 94 DTLELVVTGLYGKPF-LSADRGLVLMPGENISLTCSSAHIPFDRFSLAKEGELSLPQHQS 152
Query: 119 ILDDRSLQIENVGPQDEGLYIC 140
+ + V G+Y C
Sbjct: 153 GEHPANFSLGPVDLNVSGIYRC 174
Score = 40.6 bits (95), Expect = 6e-04
Identities = 22/147 (14%), Positives = 40/147 (27%), Gaps = 9/147 (6%)
Query: 71 KPFPISEPSDATVLSGSVVEFVCRVGGDPLPTILWRRDDGKMPTGRAKIL----DDRSLQ 126
PF IS S + V+ C+ + T L + ++ D
Sbjct: 9 MPF-ISAKSSPVIPLDGSVKIQCQAIREAYLTQLMIIKNSTYREIGRRLKFWNETDPEFV 67
Query: 127 IENVGPQDEGLYICDVENLVGSISLRASLTVHLLRDDFRAE---PKDTRVASGETALLEC 183
I+++ G Y C +L + + + + + GE L C
Sbjct: 68 IDHMDANKAGRYQCQYRIGHYRFRYSDTLELVVTGLYGKPFLSADRGLVLMPGENISLTC 127
Query: 184 GPPKGQPEPTLHWKKNGQFIDLESSKS 210
P K G+ +
Sbjct: 128 SSA-HIPFDRFSLAKEGELSLPQHQSG 153
Score = 38.3 bits (89), Expect = 0.004
Identities = 20/173 (11%), Positives = 39/173 (22%), Gaps = 29/173 (16%)
Query: 165 RAEPKDTRVASGETALLECGPPKGQPEPTLHWKKNGQFIDLESSKSLDLSRRTLGWLRVR 224
A+ + + ++C + L KN + E + L T +
Sbjct: 13 SAKS-SPVIPLDGSVKIQCQAIREAYLTQLMIIKNSTY--REIGRRLKFWNETDPEFVID 69
Query: 225 PL-----------YWNVARPRANLNPRYI----GRKMASLLIWNHPRVNR-----LSCFA 264
+ Y + + L + L+C +
Sbjct: 70 HMDANKAGRYQCQYRIGHYRFRYSDTLELVVTGLYGKPFLSADRGLVLMPGENISLTCSS 129
Query: 265 EGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSA 317
P +EG L H + V +G + C
Sbjct: 130 AHIPFDRFSLAKEGELSLPQ------HQSGEHPANFSLGPVDLNVSGIYRCYG 176
>3tgx_A Interleukin-21 receptor; class I cytokine, class I cytokine
receptor, sugarbridge, fibronectine domain, signaling,
cytokine-cytokine receptor; HET: MAN FUL NAG BMA FUC;
2.80A {Homo sapiens}
Length = 219
Score = 41.3 bits (96), Expect = 4e-04
Identities = 22/100 (22%), Positives = 34/100 (34%), Gaps = 10/100 (10%)
Query: 413 PAAPVILNTTR-GSVTLGWGEP--EPRGGGVAPVIGYTVEYFSSDLQTGWVVAAHRI--- 466
PA P + T G + W +P + + Y ++Y + I
Sbjct: 101 PAPPFDVTVTFSGQYQISWRSDYEDPAFYMLKGKLQYELQYRNRGDPWAVSPRRKLISVD 160
Query: 467 -TSTSITVSDLKPDTSYMFIVRAENSHGL---GIPSPVSP 502
S S+ + + D+SY VRA G G S S
Sbjct: 161 SRSVSLLPLEFRKDSSYELQVRAGPMPGSSYQGTWSEWSD 200
>3vh8_G Killer cell immunoglobulin-like receptor 3DL1; immunoglobulin fold,
natural killer cell receptor, immune SY; HET: NAG; 1.80A
{Homo sapiens} PDB: 1im9_D
Length = 316
Score = 41.8 bits (98), Expect = 5e-04
Identities = 57/360 (15%), Positives = 86/360 (23%), Gaps = 79/360 (21%)
Query: 59 DQWKLIAKEALIKPFPISEPSDATVLSGSVVEFVCRVGGDPLPTILWRRDDGKMPTGRAK 118
D K KPF +S A V G V C + ++D
Sbjct: 12 DDDKGSHMGGQDKPF-LSAWPSAVVPRGGHVTLRCH-YRHRFNNFMLYKEDRIHIPIFHG 69
Query: 119 ILDDRSLQIENVGPQDEGLYICDVENLVG-------SISLRASLTVHLLRDDFRAEPKDT 171
+ S + V G Y C + S + +T + + A P
Sbjct: 70 RIFQESFNMSPVTTAHAGNYTCRGSHPHSPTGWSAPSNPVVIMVTGNHRKPSLLAHP-GP 128
Query: 172 RVASGETALLECGPPKGQPEPTLHWKKNGQFIDLESSKSLDLSRRTLGWLRVRPLYWNVA 231
V SGE +L+C LH K G D + + P+ +A
Sbjct: 129 LVKSGERVILQCWSDIMFEHFFLH--KEGISKDPSRLVGQIHDGVSKANFSIGPMMLALA 186
Query: 232 RPRANLNPRYIGRKMASLLIWNHPRVNRLSCFAEGSPLPSVFWTQEGSQVLMFPGNAYGH 291
Y C+ + P + +
Sbjct: 187 G-------TY-------------------RCYGSVTHTPYQ-LSAPSDPL---------D 210
Query: 292 LHVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVREFCVLPKG--TFTLGQPN 349
+ VT + +LS V+A V C + L +
Sbjct: 211 IVVTG---------------PYEKPSLSAQPGPKVQAGESVTLSCSSRSSYDMYHLSREG 255
Query: 350 LATGNSDLRRIACD---------LRETDSGLYTCTASSESGETSWSAS-----LSVEPRP 395
A + T G Y C S WS +SV P
Sbjct: 256 GAHERRLPAVRKVNRTFQADFPLGPATHGGTYRCFGSFRHSPYEWSDPSDPLLVSVTGNP 315
Score = 28.7 bits (64), Expect = 5.7
Identities = 9/52 (17%), Positives = 14/52 (26%), Gaps = 5/52 (9%)
Query: 365 RETDSGLYTCTASSESGETSWSAS-----LSVEPRPGPHAVHRMPDSGLFPG 411
+G Y C S SA + V ++ P + G
Sbjct: 182 MLALAGTYRCYGSVTHTPYQLSAPSDPLDIVVTGPYEKPSLSAQPGPKVQAG 233
>3qt2_A Interleukin-5 receptor subunit alpha; cytokine type I receptor
fold, fibronectin type III modules, helical bundle,
cytokine, ligand-receptor complex; HET: BGC; 2.55A {Homo
sapiens}
Length = 317
Score = 41.8 bits (97), Expect = 5e-04
Identities = 22/98 (22%), Positives = 31/98 (31%), Gaps = 6/98 (6%)
Query: 404 PDSGLFPGPPAAPVILNTTRGSVTLGWGEPEPRGGGVAPVIGYTVEYFSSDLQTGWVVAA 463
PD + PP I T V L W +P P + Y V+ + +
Sbjct: 6 PDEKISLLPPVNFTIKVTGLAQVLLQW-KPNPDQEQRNVNLEYQVKINAPKEDD-YET-- 61
Query: 464 HRITSTSITVSDLKPDTSYMFIVRAENSHGLGIPSPVS 501
+ S V+ L S +N H L S S
Sbjct: 62 --RITESKAVTILHMGFSASVRTILQNDHSLLASSWAS 97
Score = 38.7 bits (89), Expect = 0.004
Identities = 18/133 (13%), Positives = 35/133 (26%), Gaps = 12/133 (9%)
Query: 362 CDLRETDSGLYTCTASSESGETSWSASLSVEPRPGPHAVHRMPDSGLFPG----PPAAPV 417
+T C + L+V P LF P+
Sbjct: 166 EYSMDTLGRNIACWFPRTFILSKGRDWLAVLVNGSSKHSAIRPFDQLFALHAIDQINPPL 225
Query: 418 IL--NTTRGSVTLGWGEPEPRGGGVAPVIGYTVEYFSSDLQTGWVVAAHRITSTSITVSD 475
+ +++ W +P Y V+ ++ + T+ +S
Sbjct: 226 NVTAEIEGTRMSIQWEKPVSAFPIH--CFDYEVKIHNTRNGYLQIEK----LMTNAFISI 279
Query: 476 LKPDTSYMFIVRA 488
+ + Y VRA
Sbjct: 280 IDDLSKYDVQVRA 292
>2edo_A CD48 antigen; beta-sandwich, IG-fold, B-lymphocyte activation
marker blast-1, BCM1 surface antigen, leukocyte antigen
MEM-102, TCT.1; NMR {Homo sapiens}
Length = 121
Score = 39.1 bits (91), Expect = 6e-04
Identities = 21/101 (20%), Positives = 29/101 (28%), Gaps = 18/101 (17%)
Query: 76 SEPSDATVLSGSVVEFVCRV-GGDPLPTILWRR---------DDGKMPT------GRAKI 119
TV+SGS V + + W D K GR ++
Sbjct: 9 GHLVHMTVVSGSNVTLNISESLPENYKQLTWFYTFDQKIVEWDSRKSKYFESKFKGRVRL 68
Query: 120 LDDR-SLQIENVGPQDEGLYICDVENLVG-SISLRASLTVH 158
+L I V +D YI V G + L V
Sbjct: 69 DPQSGALYISKVQKEDNSTYIMRVLKKTGNEQEWKIKLQVL 109
Score = 36.0 bits (83), Expect = 0.007
Identities = 17/81 (20%), Positives = 26/81 (32%), Gaps = 11/81 (13%)
Query: 265 EGSPLPSVFW---------TQEGSQVLMFPGNAYGHLHV-TQEGTLRIQGVQKEDAGFFV 314
+ W + + F G + + Q G L I VQKED ++
Sbjct: 30 LPENYKQLTWFYTFDQKIVEWDSRKSKYFESKFKGRVRLDPQSGALYISKVQKEDNSTYI 89
Query: 315 CSALSVAGSTTVRAF-LQVRE 334
L G+ LQV +
Sbjct: 90 MRVLKKTGNEQEWKIKLQVLD 110
Score = 33.0 bits (75), Expect = 0.087
Identities = 9/38 (23%), Positives = 16/38 (42%), Gaps = 2/38 (5%)
Query: 363 DLRETDSGLYTCTASSESGET-SWSASLSV-EPRPGPH 398
+++ D+ Y ++G W L V +P P P
Sbjct: 79 KVQKEDNSTYIMRVLKKTGNEQEWKIKLQVLDPVPKPV 116
Score = 26.8 bits (59), Expect = 9.9
Identities = 13/90 (14%), Positives = 22/90 (24%), Gaps = 17/90 (18%)
Query: 164 FRAEPKDTRVASGETALLECGPPKGQPEPTLHWKKNGQFIDLESSKSLDLSRRTLGWLRV 223
+ V SG L + L W +E R
Sbjct: 7 GQGHLVHMTVVSGSNVTLNISESLPENYKQLTWFYTFDQKIVEWDS------------RK 54
Query: 224 RPLYWNVARPRANLNPRYIGRKMASLLIWN 253
+ + + R L+P + +L I
Sbjct: 55 SKYFESKFKGRVRLDP-----QSGALYISK 79
>1oww_A FN, fibronectin first type III module, CIG; fibronectin type III
module, structural protein; NMR {Homo sapiens} SCOP:
b.1.2.1
Length = 98
Score = 38.6 bits (89), Expect = 7e-04
Identities = 17/85 (20%), Positives = 28/85 (32%), Gaps = 7/85 (8%)
Query: 411 GPPAAPVILNTTR--GSVTLGWGEPEPRGGGVAPVIGYTVEYFSSDLQTGWVVAAHRITS 468
P I T S + W P+P + + Y + + + W A
Sbjct: 6 SGPVEVFITETPSQPNSHPIQWNAPQP-----SHISKYILRWRPKNSVGRWKEATIPGHL 60
Query: 469 TSITVSDLKPDTSYMFIVRAENSHG 493
S T+ LKP Y + + +G
Sbjct: 61 NSYTIKGLKPGVVYEGQLISIQQYG 85
>1pko_A Myelin oligodendrocyte glycoprotein; IGV-domain, immune system;
1.45A {Rattus norvegicus} SCOP: b.1.1.1 PDB: 1pkq_E
3csp_A 1py9_A
Length = 139
Score = 39.1 bits (91), Expect = 8e-04
Identities = 21/104 (20%), Positives = 30/104 (28%), Gaps = 27/104 (25%)
Query: 82 TVLSGSVVEFVCRV---GGDPLPTILWRRDDGKMP------------------TGRAKIL 120
L G E CR+ + W R GR ++L
Sbjct: 17 RALVGDEAELPCRISPGKNATGMEVGWYRSPFSRVVHLYRNGKDQDAEQAPEYRGRTELL 76
Query: 121 DDR------SLQIENVGPQDEGLYICDVENLVGSISLRASLTVH 158
+ +L+I+NV DEG Y C + L V
Sbjct: 77 KESIGEGKVALRIQNVRFSDEGGYTCFFRDHSYQEEAAVELKVE 120
Score = 28.7 bits (64), Expect = 2.9
Identities = 15/61 (24%), Positives = 22/61 (36%), Gaps = 2/61 (3%)
Query: 276 QEGSQVLMFPGNAYGHLHVTQEG--TLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVR 333
Q+ Q + G EG LRIQ V+ D G + C + L+V
Sbjct: 61 QDAEQAPEYRGRTELLKESIGEGKVALRIQNVRFSDEGGYTCFFRDHSYQEEAAVELKVE 120
Query: 334 E 334
+
Sbjct: 121 D 121
Score = 28.0 bits (62), Expect = 6.0
Identities = 19/67 (28%), Positives = 28/67 (41%), Gaps = 7/67 (10%)
Query: 340 KGTFTLGQPNLATGNSDLRRIACDLRETDSGLYTCTASSESGETSWSASLSVE-----PR 394
+G L + ++ G LR I ++R +D G YTC S + + L VE
Sbjct: 70 RGRTELLKESIGEGKVALR-IQ-NVRFSDEGGYTCFFRDHSYQEEAAVELKVEDPFYWIN 127
Query: 395 PGPHAVH 401
PG H
Sbjct: 128 PGRSRSH 134
>3noi_A Natural cytotoxicity triggering receptor 3; immune system, innate
immunity, immunoglobulin-like I2 type natural killer
cell activation; HET: 1PG; 1.84A {Homo sapiens} PDB:
3pv6_B*
Length = 120
Score = 37.2 bits (86), Expect = 0.003
Identities = 22/93 (23%), Positives = 32/93 (34%), Gaps = 22/93 (23%)
Query: 75 ISEPSDATVLSGSVVEFVCRV----GGDPLPTILWRRDDG----------KMPTGRAKIL 120
+S+P + L GS C G + ++ W RD+ GR L
Sbjct: 11 VSQPPEIRTLEGSSAFLPCSFNASQGRLAIGSVTWFRDEVVPGKEVRNGTPEFRGRLAPL 70
Query: 121 DDR--------SLQIENVGPQDEGLYICDVENL 145
L I +V D +Y+C VE L
Sbjct: 71 ASSRFLHDHQAELHIRDVRGHDASIYVCRVEVL 103
Score = 27.2 bits (60), Expect = 8.0
Identities = 21/94 (22%), Positives = 29/94 (30%), Gaps = 20/94 (21%)
Query: 260 LSCFAEGS----PLPSVFWTQ----EGSQVLMFPGNAYGHLHVTQEG--------TLRIQ 303
L C S + SV W + G +V G L L I+
Sbjct: 27 LPCSFNASQGRLAIGSVTWFRDEVVPGKEVRNGTPEFRGRLAPLASSRFLHDHQAELHIR 86
Query: 304 GVQKEDAGFFVCSALSVAGSTTV---RAFLQVRE 334
V+ DA +VC + V G L V +
Sbjct: 87 DVRGHDASIYVC-RVEVLGLGVGTGNGTRLVVEK 119
>2aw2_A B and T lymphocyte attenuator; IGI domain, IGG domain, TNFRSF,
protein-protein complex, IMM system; HET: NAG FUL; 2.80A
{Homo sapiens} SCOP: b.1.1.1
Length = 120
Score = 37.1 bits (85), Expect = 0.003
Identities = 27/113 (23%), Positives = 40/113 (35%), Gaps = 19/113 (16%)
Query: 61 WKLIAKEALIKPFPISEPSDATVLSGSVVEFVCRVG-GDPLPTILWRRDDGKMPTGRAKI 119
W + KE+ I S+ ++L+G E C V P + W + +G
Sbjct: 1 WNIHGKESCDVQLYIKRQSEHSILAGDPFELECPVKYCANRPHVTWCKLNGTT----CVK 56
Query: 120 LDDR-------------SLQIENVGPQDEGLYICDVENLVGSISLRASLTVHL 159
L+DR L E V P D G Y C I S T+++
Sbjct: 57 LEDRQTSWKEEKNISFFILHFEPVLPNDNGSYRCSANFQSNLIESH-STTLYV 108
Score = 27.9 bits (61), Expect = 4.9
Identities = 12/36 (33%), Positives = 17/36 (47%), Gaps = 1/36 (2%)
Query: 367 TDSGLYTCTASSESGE-TSWSASLSVEPRPGPHAVH 401
D+G Y C+A+ +S S S +L V H H
Sbjct: 83 NDNGSYRCSANFQSNLIESHSTTLYVTDVKHHHHHH 118
>1neu_A Myelin P0 protein; structural protein, glycoprotein, transmembrane,
phosphorylation, immunoglobulin fold, signal; 1.90A
{Rattus norvegicus} SCOP: b.1.1.1
Length = 124
Score = 37.3 bits (86), Expect = 0.003
Identities = 11/37 (29%), Positives = 20/37 (54%)
Query: 122 DRSLQIENVGPQDEGLYICDVENLVGSISLRASLTVH 158
D S+ I N+ D G + CDV+N + + +T++
Sbjct: 80 DGSIVIHNLDYSDNGTFTCDVKNPPDIVGKTSQVTLY 116
>2e6q_A Obscurin-like protein 1; IG-like domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 112
Score = 36.5 bits (84), Expect = 0.004
Identities = 16/104 (15%), Positives = 26/104 (25%), Gaps = 20/104 (19%)
Query: 69 LIKPFPISEP-SDATVLSGSVVEFVCRVGGDPLPTILWRRD-----------DGKMPTGR 116
+ D V G F + T W + + R
Sbjct: 5 SSGTARLVAGLEDVQVYDGEDAVFSLDLSTIIQGT--WFLNGEELKSNEPEGQVEPGALR 62
Query: 117 AKILDD---RSLQIENVGPQDEGLYICDVENLVGSISLRASLTV 157
+I L + V QD G + + A+LT+
Sbjct: 63 YRIEQKGLQHRLILHAVKHQDSGALVGFS---CPGVQDSAALTI 103
Score = 33.0 bits (75), Expect = 0.058
Identities = 14/84 (16%), Positives = 26/84 (30%), Gaps = 13/84 (15%)
Query: 259 RLSCFAEGSPLPSVFWTQEGSQV-----LMFPGNAYGHLHVTQEGT---LRIQGVQKEDA 310
S + S + W G ++ + Q+G L + V+ +D+
Sbjct: 27 VFSL--DLSTIIQGTWFLNGEELKSNEPEGQVEPGALRYRIEQKGLQHRLILHAVKHQDS 84
Query: 311 GFFVCSALSVAGSTTVRAFLQVRE 334
G V A L ++E
Sbjct: 85 GALVG---FSCPGVQDSAALTIQE 105
Score = 27.6 bits (61), Expect = 4.4
Identities = 12/61 (19%), Positives = 21/61 (34%), Gaps = 5/61 (8%)
Query: 164 FRAEPKDTRVASGETALLECGPPKGQPEPTLHWKKNGQFIDLESSKSLDLSRRTLGWLRV 223
A +D +V GE A+ W NG+ +L+S++ R+
Sbjct: 11 LVAGLEDVQVYDGEDAVFSL---DLSTIIQGTWFLNGE--ELKSNEPEGQVEPGALRYRI 65
Query: 224 R 224
Sbjct: 66 E 66
>2uvf_A Exopolygalacturonase; GH28, pectin, cell WALL, hydrolase,
periplasm, beta-helix, glycosidase, EXO-activity; HET:
AD0; 2.1A {Yersinia enterocolitica} PDB: 2uve_A*
Length = 608
Score = 39.2 bits (91), Expect = 0.004
Identities = 25/110 (22%), Positives = 36/110 (32%), Gaps = 19/110 (17%)
Query: 403 MPDSGLFPGPPAAPVI--LNTTRGSVTLGWGEPEPRGGGV-------APVIGYTVE---- 449
M P + L S+ L W PE V ++G +
Sbjct: 28 MAAKSSSLDAPQQLQVPTLAYDESSIVLVWKAPEDTRKIVDYQIFSAGKLLGKASDNNDN 87
Query: 450 ------YFSSDLQTGWVVAAHRITSTSITVSDLKPDTSYMFIVRAENSHG 493
Y H+I + TV LKP+TSY F V+A+ + G
Sbjct: 88 FSPAKPYIDHFYVNDKDNFQHKIVMQNFTVIGLKPETSYQFTVKAQYADG 137
>1p6f_A NKP46, natural cytotoxicity triggering receptor 1; natural
cytotoxicity receptor, NK cell receptor, immunoglobulin
fold, immune system; 2.20A {Homo sapiens} SCOP: b.1.1.4
b.1.1.4
Length = 242
Score = 38.3 bits (89), Expect = 0.004
Identities = 24/141 (17%), Positives = 37/141 (26%), Gaps = 5/141 (3%)
Query: 59 DQWKLIAKEALIKPFPISEPSDATVLSGSVVEFVCRVGGDPLPTILWRRDDGKMPTGRAK 118
+ L+ E P P V+SG V F CR L ++ R
Sbjct: 90 NLLDLVVTEMYDTPTLSVHPG-PEVISGEKVTFYCR-LDTATSMFLLLKEGRSSHVQRGY 147
Query: 119 ILDDRSLQIENVGPQDEGLYICDVENLVGSISLRAS---LTVHLLRDDFRAEPKDTRVAS 175
+ V G Y C + S + L V ++ P+D +
Sbjct: 148 GKVQAEFPLGPVTTAHRGTYRCFGSYNNHAWSFPSEPVKLLVTGDIENTSLAPEDPTFPA 207
Query: 176 GETALLECGPPKGQPEPTLHW 196
G + W
Sbjct: 208 DTWGTYLLTTETGLQKDHALW 228
>3pv7_A B7-H6, IG-like domain-containing protein
DKFZP686O24166/DKFZP686I21167; NK cell receptor,
receptor-ligand complex, immune system; HET: NAG; 2.00A
{Homo sapiens} PDB: 3pv6_A*
Length = 248
Score = 38.1 bits (88), Expect = 0.005
Identities = 18/86 (20%), Positives = 26/86 (30%), Gaps = 13/86 (15%)
Query: 122 DRSLQIENVGPQDEGLYICDVENLVGSISLRASLTVHLLRDDFRAEPK-----DTRVASG 176
D SL++ + ++ G Y C+V L V A P D
Sbjct: 81 DASLRLPGIQLEEAGEYRCEVVVTPLKAQGTVQLEV-------VASPASRLLLDQVGMKE 133
Query: 177 ETALLECGPPKGQPEP-TLHWKKNGQ 201
C PE + W+K Q
Sbjct: 134 NEDKYMCESSGFYPEAINITWEKQTQ 159
Score = 28.5 bits (63), Expect = 6.5
Identities = 11/90 (12%), Positives = 21/90 (23%), Gaps = 15/90 (16%)
Query: 168 PKDTRVASGETALLEC----GPPKGQPEPTLHWKKNGQFIDLESSKSLDLSRRTLGWLRV 223
+ + C P + W D + +
Sbjct: 10 GGTQITPLNDNVTIFCNIFYSQPLNITSMGITWFWKSLTFD-----------KEVKVFEF 58
Query: 224 RPLYWNVARPRANLNPRYIGRKMASLLIWN 253
+ RP A ++P + ASL +
Sbjct: 59 FGDHQEAFRPGAIVSPWRLKSGDASLRLPG 88
Score = 28.1 bits (62), Expect = 8.5
Identities = 18/120 (15%), Positives = 31/120 (25%), Gaps = 24/120 (20%)
Query: 260 LSCFAEGSPLPS-----VFWTQ----EGSQVLMFPGNAYGHLHVTQEG------------ 298
+ C S + + W +V +F
Sbjct: 23 IFCNIFYSQPLNITSMGITWFWKSLTFDKEVKVFEFFGDHQEAFRPGAIVSPWRLKSGDA 82
Query: 299 TLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVREFCVLPKGTFTLGQPNLATGNSDLR 358
+LR+ G+Q E+AG + C + L+V P L Q +
Sbjct: 83 SLRLPGIQLEEAGEYRCEVVVTPLKAQGTVQLEVV---ASPASRLLLDQVGMKENEDKYM 139
>2pnd_A V-SET and immunoglobulin domain containing 4; complement receptor,
IG-like domain, immune system; 1.00A {Mus musculus} PDB:
2icc_A 2ice_S* 2icf_S*
Length = 119
Score = 36.1 bits (83), Expect = 0.006
Identities = 16/61 (26%), Positives = 19/61 (31%), Gaps = 9/61 (14%)
Query: 93 CRVGGDPLPTILWRRDDGKMPT-----GRAKILDDR----SLQIENVGPQDEGLYICDVE 143
G TI R G GR K+ SLQI + D Y C+V
Sbjct: 39 LVRHGSDSVTIFLRDSTGDHIQQAKYRGRLKVSHKVPGDVSLQINTLQMDDRNHYTCEVT 98
Query: 144 N 144
Sbjct: 99 W 99
>2or8_A Hepatitis A virus cellular receptor 1 homolog; beta barrel,
immunoglobulin fold, IGV domain, TIM, immune system;
2.50A {Mus musculus}
Length = 116
Score = 36.0 bits (83), Expect = 0.006
Identities = 20/94 (21%), Positives = 27/94 (28%), Gaps = 24/94 (25%)
Query: 75 ISEPSDATVLSGSVVEFVCRVGGDP-LPTILWRRD--------------DGK----MPTG 115
+ + + G V C + T W R +G +
Sbjct: 1 MDSYVEVKGVVGHPVTLPCTYSTYRGITTTCWGRGQCPSSACQNTLIWTNGHRVTYQKSS 60
Query: 116 RAKILDDR-----SLQIENVGPQDEGLYICDVEN 144
R + SL IEN D GLY C VE
Sbjct: 61 RYNLKGHISEGDVSLTIENSVESDSGLYCCRVEI 94
Score = 27.6 bits (61), Expect = 6.1
Identities = 16/52 (30%), Positives = 24/52 (46%), Gaps = 6/52 (11%)
Query: 349 NLATGNSDLRRIACDLRETDSGLYTCTASSESGETSWSA---SLSVEPRPGP 397
+++ G+ L I + E+DSGLY C G + SL V+P P
Sbjct: 67 HISEGDVSLT-IE-NSVESDSGLYCCRVEI-PGWFNDQKVTFSLQVKPELVP 115
>2oyp_A Hepatitis A virus cellular receptor 2; TIM-3, T-cell immunoglobulin
mucin, signaling protein; 1.95A {Mus musculus} PDB:
3kaa_A*
Length = 109
Score = 35.7 bits (82), Expect = 0.008
Identities = 14/50 (28%), Positives = 21/50 (42%), Gaps = 7/50 (14%)
Query: 115 GRAKILDDR-----SLQIENVGPQDEGLYICDVEN--LVGSISLRASLTV 157
R ++ D SL I+NV D G Y C ++ L+ L L +
Sbjct: 59 SRYQLKGDLNKGDVSLIIKNVTLDDHGTYCCRIQFPGLMNDKKLELKLDI 108
>2qsq_A Carcinoembryonic antigen-related cell adhesion MO; glycoprotein,
GPI-anchor, immunoglobulin DOMA lipoprotein, membrane;
1.95A {Homo sapiens} PDB: 2qst_A 2ver_N* 2gk2_A
Length = 111
Score = 34.9 bits (80), Expect = 0.013
Identities = 13/51 (25%), Positives = 22/51 (43%), Gaps = 1/51 (1%)
Query: 109 DGKMPTGRAKILDDRSLQIENVGPQDEGLYICDV-ENLVGSISLRASLTVH 158
G +GR I + SL I+N+ D G Y V ++ + + V+
Sbjct: 58 PGPAYSGREIIYPNASLLIQNIIQNDAGFYTLHVIKSDLVNEEATGQFRVY 108
Score = 29.1 bits (65), Expect = 1.3
Identities = 16/55 (29%), Positives = 24/55 (43%), Gaps = 2/55 (3%)
Query: 285 PGNAY-GHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVREFCVL 338
PG AY G + +L IQ + + DAGF+ + + A Q R + L
Sbjct: 58 PGPAYSGREIIYPNASLLIQNIIQNDAGFYTLHVIK-SDLVNEEATGQFRVYPEL 111
>1uc6_A CNTF receptor, ciliary neurotrophic factor receptor alpha;
cytokine, leukemia inhibitory factor, cytokine receptor;
NMR {Homo sapiens} SCOP: b.1.2.1
Length = 109
Score = 35.0 bits (80), Expect = 0.015
Identities = 17/95 (17%), Positives = 32/95 (33%), Gaps = 5/95 (5%)
Query: 410 PGPPAAPVI--LNTTRGSVTLGWGEPEPRGGGVAPVIGYTVEYFSSDLQTGWVVAAHRIT 467
P PP V + + + + W P + + + + Y + W
Sbjct: 8 PDPPENVVARPVPSNPRRLEVTWQTPSTWPDPESFPLKFFLRY-RPLILDQWQ-HVELSN 65
Query: 468 STSITVSDLKPDTSYMFIVRAENSHGLGIPSPVSP 502
T+ T++D Y+ V A + +G S S
Sbjct: 66 GTAHTITDAYAGKEYIIQVAA-KDNEIGTWSDWSV 99
>3lb6_C IL-13, interleukin-13 receptor subunit alpha-2; cytokine, decoy,
decoy receptor, glycoprotein; HET: MLY NAG; 3.05A {Homo
sapiens} PDB: 3lb6_D*
Length = 380
Score = 37.1 bits (85), Expect = 0.017
Identities = 16/120 (13%), Positives = 32/120 (26%), Gaps = 8/120 (6%)
Query: 404 PDSGLFPGPPAAPVILNTT-RGSVTLGWGEPEPRGGGVAPVIGYTVEYFSSDLQTGWVVA 462
D+ + PP I++ G + L W P + Y ++Y + +T +
Sbjct: 26 SDTEIKVNPPQDFEIVDPGYLGYLYLQWQPPLSLDHFKECTVEYELKYRNIGSETWKTII 85
Query: 463 AHRITSTSITVSDLKPDTSYMFIVRAEN-----SHGLGIPSPVSPITRTLGLNSLVPQHL 517
+ DL S + + G+ Q +
Sbjct: 86 TKNLHYK--DGFDLNKGIEAXIHTLLPWQCTNGSEVQSSWAETTYWISPQGIPETXVQDM 143
Score = 36.7 bits (84), Expect = 0.020
Identities = 14/85 (16%), Positives = 25/85 (29%), Gaps = 6/85 (7%)
Query: 404 PDSGLFPGPPAAPVILNTTRGSVTLGWGEPEPRGGGVAPVIGYTVEYFSSDLQTGWVVAA 463
+ + P PP + + L W P Y +E D T
Sbjct: 232 LQNIVKPLPPVYLTFTRESSCEIKLKWSIPLGPIPA--RCFDYEIEIREDD-TTLVTA-- 286
Query: 464 HRITSTSITVSDLKPDTSYMFIVRA 488
+ + + T+ F+VR+
Sbjct: 287 -TVENETYTLKTTNETRQLCFVVRS 310
Score = 32.9 bits (74), Expect = 0.33
Identities = 24/230 (10%), Positives = 51/230 (22%), Gaps = 41/230 (17%)
Query: 390 SVEPRPGPHAVHRMPDSGLFPGPPAAPVILNTTRGSVTLGWGEPEPRGGGVAPVIGYTVE 449
S + + G+ + + W + Y E
Sbjct: 117 SEVQSSWAETTYWISPQGIPETXVQDMDCVYYNWQYLLCSWKPGIGVLLDTNYNLFYWYE 176
Query: 450 YFSSDLQTGWVVAAH-RITSTSITVSDLKPDTSYMFIVRAENSHGLGIPSPVSPITRTLG 508
LQ + A + + + V + + I S
Sbjct: 177 GLDHALQCVDYIKADGQNIGCRFPYLEASDYKDFYICVNGSSENK-PIRSSYFTFQLQNI 235
Query: 509 LNSLVPQHLLDEARARLGTKVVNLRELIPTASTAVRITWEVSWGSVPQHLLDEARARLGT 568
+ L P +L +S +++ W + G +P
Sbjct: 236 VKPLPPVYL----------------TFTRESSCEIKLKWSIPLGPIPARCF--------D 271
Query: 569 KVVNLRELIPTASTAVRITWEKYNMATVMNAATTTSYTVTHLRKFTKYEF 618
+ +RE T + +YT+ + + F
Sbjct: 272 YEIEIRE--------DDTTLVTATV-------ENETYTLKTTNETRQLCF 306
>2gi7_A GPVI protein; IG-like domains, blood clotting, cell adhesion; 2.40A
{Homo sapiens}
Length = 184
Score = 35.9 bits (83), Expect = 0.018
Identities = 25/144 (17%), Positives = 42/144 (29%), Gaps = 15/144 (10%)
Query: 71 KPFPISEPSDATVLSGSVVEFVCRVGGDPLPTILWRRDDGKMPTGRAKILDDRSLQIENV 130
KP + PS + V V C+ G + + ++ D L I +
Sbjct: 8 KPSLQALPS-SLVPLEKPVTLRCQ-GPPGVDLYRLEKL------SSSRYQDQAVLFIPAM 59
Query: 131 GPQDEGLYICDVENLVGSISLRASLTVHLLRDDFR----AEPKDTRVASGETALLECGPP 186
G Y C +N L + + A+P V+SG L+C
Sbjct: 60 KRSLAGRYRCSYQNGSLWSLPSDQLELVATGVFAKPSLSAQP-GPAVSSGGDVTLQCQTR 118
Query: 187 KGQPEPTLHWKKNGQFIDLESSKS 210
K G ++ +
Sbjct: 119 --YGFDQFALYKEGDPAPYKNPER 140
Score = 32.9 bits (75), Expect = 0.16
Identities = 19/82 (23%), Positives = 27/82 (32%), Gaps = 2/82 (2%)
Query: 59 DQWKLIAKEALIKPFPISEPSDATVLSGSVVEFVCRVGGDPLPTILWRRDDGKMPTGRAK 118
DQ +L+A KP ++P V SG V C+ ++ P +
Sbjct: 82 DQLELVATGVFAKPSLSAQPG-PAVSSGGDVTLQCQ-TRYGFDQFALYKEGDPAPYKNPE 139
Query: 119 ILDDRSLQIENVGPQDEGLYIC 140
S I V G Y C
Sbjct: 140 RWYRASFPIITVTAAHSGTYRC 161
>3bia_X T-cell immunoglobulin and mucin domain- containing protein 4; beta
barrel, immunoglobulin fold, IGV domain, TIM,
glycoprotein; HET: TLA; 2.20A {Mus musculus} PDB:
3bi9_X* 3bib_X*
Length = 116
Score = 34.5 bits (79), Expect = 0.021
Identities = 10/35 (28%), Positives = 14/35 (40%), Gaps = 5/35 (14%)
Query: 115 GRAKILDDR-----SLQIENVGPQDEGLYICDVEN 144
+ +L SL I N D G+Y C +E
Sbjct: 60 TKYTLLGKVQFGEVSLTISNTNRGDSGVYCCRIEV 94
>2or7_A T-cell immunoglobulin and mucin domain- containing protein 2; beta
barrel, immunoglobulin fold, IGV domain, TIM, immune
system; 1.50A {Mus musculus}
Length = 115
Score = 34.6 bits (79), Expect = 0.022
Identities = 18/94 (19%), Positives = 27/94 (28%), Gaps = 25/94 (26%)
Query: 75 ISEPSDATVLSGSVVEFVCR--VGGDPLPTILWRRD--------------DGK----MPT 114
+ + L+G V C + + W +G
Sbjct: 1 MESHTAVQGLAGHPVTLPCIYSTHLGGIVPMCWGLGECRHSYCIRSLIWTNGYTVTHQRN 60
Query: 115 GRAKILDDR-----SLQIENVGPQDEGLYICDVE 143
R ++ + SL IEN D G Y C VE
Sbjct: 61 SRYQLKGNISEGNVSLTIENTVVGDGGPYCCVVE 94
Score = 30.3 bits (68), Expect = 0.66
Identities = 13/49 (26%), Positives = 17/49 (34%), Gaps = 2/49 (4%)
Query: 349 NLATGNSDLRRIACDLRETDSGLYTCTASSESGETSWSASLSVEPRPGP 397
N++ GN L I + D G Y C L V+P P
Sbjct: 68 NISEGNVSLT-IE-NTVVGDGGPYCCVVEIPGAFHFVDYMLEVKPELVP 114
>2frg_P TREM-like transcript-1; immunoglobulin-like, beta-sandwich, cell
surface receptor, triggering receptor, platelet
receptor, ITIM, immune system; 1.19A {Homo sapiens}
Length = 106
Score = 33.3 bits (76), Expect = 0.043
Identities = 18/71 (25%), Positives = 29/71 (40%), Gaps = 6/71 (8%)
Query: 93 CRVGGDPLPTILWRRDDGKMPTGRAKILDDR-----SLQIENVGPQDEGLYICDVENLVG 147
CR + ++ D + P GR L D +++ + +D G Y C V+ G
Sbjct: 33 CRFLPEGCQPLVSSAVDRRAPAGRRTFLTDLGGGLLQVEMVTLQEEDAGEYGCMVDGARG 92
Query: 148 -SISLRASLTV 157
I R SL +
Sbjct: 93 PQILHRVSLNI 103
Score = 27.9 bits (62), Expect = 3.8
Identities = 10/32 (31%), Positives = 14/32 (43%), Gaps = 1/32 (3%)
Query: 363 DLRETDSGLYTCTASSESGETSWSA-SLSVEP 393
L+E D+G Y C G SL++ P
Sbjct: 74 TLQEEDAGEYGCMVDGARGPQILHRVSLNILP 105
>3og6_B Interleukin 28 receptor, alpha (interferon, lambd receptor);
helical bundle, fibronectin type III domain,
beta-sandwich, signaling, membrane; HET: BMA NAG; 2.10A
{Homo sapiens} PDB: 3og4_B*
Length = 226
Score = 35.0 bits (80), Expect = 0.045
Identities = 21/93 (22%), Positives = 28/93 (30%), Gaps = 13/93 (13%)
Query: 410 PGPPAAP----VILNTTRGSVTLGWGEPEPRGGGVAPVIGYTVEYFSSDLQTGWVVAA-- 463
PG P V L + SV L W P G + Y V Y SS + W
Sbjct: 1 PGRPRLAPPQNVTLLSQNFSVYLTW-LPGL---GNPQDVTYFVAYQSSPTRRRWREVEEC 56
Query: 464 HRITSTSITVSDLK---PDTSYMFIVRAENSHG 493
++ LK + VR +
Sbjct: 57 AGTKELLCSMMCLKKQDLYNKFKGRVRTVSPSS 89
>1qfo_A Protein (sialoadhesin); immunoglobulin superfamily, carbohydrate
binding, immune system; HET: SIA GAL GLC; 1.85A {Mus
musculus} SCOP: b.1.1.1 PDB: 1od7_A* 1oda_A* 1od9_A*
1qfp_A 2bve_A* 1url_A*
Length = 119
Score = 33.7 bits (77), Expect = 0.051
Identities = 19/99 (19%), Positives = 34/99 (34%), Gaps = 27/99 (27%)
Query: 73 FPISEPSDATVLSGSVVEFVCRV----GGDPLP--TILWRRDDGKMPT------------ 114
+ +S P + LSGS + C T +W D
Sbjct: 2 WGVSSPKNVQGLSGSCLLIPCIFSYPADVPVSNGITAIWYYDYSGKRQVVIHSGDPKLVD 61
Query: 115 ----GRAKILDDR-----SLQIENVGPQDEGLYICDVEN 144
GRA+++ + +L ++++ P+D G Y E
Sbjct: 62 KRFRGRAELMGNMDHKVCNLLLKDLKPEDSGTYNFRFEI 100
Score = 27.1 bits (60), Expect = 8.6
Identities = 4/18 (22%), Positives = 10/18 (55%)
Query: 298 GTLRIQGVQKEDAGFFVC 315
L ++ ++ ED+G +
Sbjct: 79 CNLLLKDLKPEDSGTYNF 96
>1y6k_R Interleukin-10 receptor alpha chain; helix bundle, receptor
complex, immune system; 2.52A {Homo sapiens} SCOP:
b.1.2.1 b.1.2.1 PDB: 1j7v_R* 1lqs_R 1y6m_R 1y6n_R
Length = 214
Score = 34.7 bits (79), Expect = 0.052
Identities = 13/157 (8%), Positives = 38/157 (24%), Gaps = 21/157 (13%)
Query: 356 DLRRIACDLRETDSGLYTCTASSESGETSWSASLSVEPRPGPHAVHRMPDSGLFPGPPAA 415
DL + DL ++ A S + W+ + + +
Sbjct: 61 DLTAVTLDLYHSNGYRARVRAVDGSRHSQWTVTNTRFSVDEVT-----------LTVGSV 109
Query: 416 PVILNTTRGSVTLGWGEPEPRGGG------VAPVIGYTVEYFSSDLQTGWVVAAHRITST 469
+ ++ + P+ + Y + + ++
Sbjct: 110 NLEIHNGFILGKIQLPRPKMAPAQDTYESIFSHFREYEIAIRKV--PGQFTFTHKKVKHE 167
Query: 470 SITVSDLKPDTSYMFIVRA--ENSHGLGIPSPVSPIT 504
++ + V+ + G+ S I+
Sbjct: 168 QFSLLTSGEVGEFCVQVKPSVASRSNKGMWSKEECIS 204
>1oll_A NK receptor; immune system/receptor, NK cell triggering receptor,
immune system, IG domain, cytotoxicity, C2-type IG-like
domains; 1.93A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4
Length = 188
Score = 34.4 bits (79), Expect = 0.057
Identities = 14/70 (20%), Positives = 19/70 (27%), Gaps = 1/70 (1%)
Query: 71 KPFPISEPSDATVLSGSVVEFVCRVGGDPLPTILWRRDDGKMPTGRAKILDDRSLQIENV 130
+S V+SG V F CR L ++ R + V
Sbjct: 98 DTPTLSVHPGPEVISGEKVTFYCR-LDTATSMFLLLKEGRSSHVQRGYGKVQAEFPLGPV 156
Query: 131 GPQDEGLYIC 140
G Y C
Sbjct: 157 TTAHRGTYRC 166
>2ptt_A CD48 antigen; CD244, CD48, NK cell receptor, X-RAY, immune system;
1.63A {Mus musculus} PDB: 2ptv_A
Length = 110
Score = 32.9 bits (75), Expect = 0.069
Identities = 14/47 (29%), Positives = 21/47 (44%), Gaps = 4/47 (8%)
Query: 115 GRAKILDDR--SLQIENVGPQDEGLYICDVENLVGSISLRASLTVHL 159
GR L++ +L I NV +D+G Y V L+ +L V
Sbjct: 64 GRVY-LEENNGALHISNVRKEDKGTYYMRV-LRETENELKITLEVFD 108
Score = 30.2 bits (68), Expect = 0.71
Identities = 8/29 (27%), Positives = 13/29 (44%), Gaps = 1/29 (3%)
Query: 363 DLRETDSGLYTCTASSESGETSWSASLSV 391
++R+ D G Y E+ E +L V
Sbjct: 79 NVRKEDKGTYYMRVLRET-ENELKITLEV 106
Score = 27.1 bits (60), Expect = 6.4
Identities = 11/40 (27%), Positives = 17/40 (42%), Gaps = 1/40 (2%)
Query: 295 TQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVRE 334
G L I V+KED G + L ++ L+V +
Sbjct: 70 ENNGALHISNVRKEDKGTYYMRVLR-ETENELKITLEVFD 108
>1wft_A 1700129L13RIK protein; FN3 domain, similar to HOST cell factor 2,
structural genomics, riken structural
genomics/proteomics initiative, RSGI; NMR {Mus musculus}
SCOP: b.1.2.1
Length = 123
Score = 33.3 bits (75), Expect = 0.073
Identities = 21/99 (21%), Positives = 33/99 (33%), Gaps = 13/99 (13%)
Query: 409 FPGPPAAPVILNTTRGSVTLGWGEPEPRGGGVAPVIGYTVEYFSSDLQTGWVVAAHRI-- 466
PG P+ I G + L W P G + Y + + RI
Sbjct: 7 GPGAPSTVRISKNVDG-IHLSWEPPTSPSGNILEYSAYLAIRTAQMQDNPSQLVFMRIYC 65
Query: 467 -TSTSITVSDLKPDTSYM---------FIVRAENSHGLG 495
TS TV+ + +++ F + A+N G G
Sbjct: 66 GLKTSCTVTAGQLANAHIDYTSRPAIVFRISAKNEKGYG 104
>1xau_A B- and T-lymphocyte attenuator; IG domain, beta sandwich,
structural genomics, PSI, protein structure initiative;
1.80A {Mus musculus} SCOP: b.1.1.4
Length = 122
Score = 32.9 bits (74), Expect = 0.10
Identities = 17/98 (17%), Positives = 33/98 (33%), Gaps = 14/98 (14%)
Query: 75 ISEPSDATVLSGSVVEFVCRVG-GDPLPTILWRRDDGKM---PTGRAKIL------DDRS 124
I S + +G + + C V P + W + +G + ++
Sbjct: 18 IKRNSKHSAWTGELFKIECPVKYCVHRPNVTWCKHNGTIWVPLEVGPQLYTSWEENRSVP 77
Query: 125 ---LQIENVGPQDEGLYICDVENLVGSISLRASLTVHL 159
L + + D G Y C N + S+T+H+
Sbjct: 78 VFVLHFKPIHLSDNGSYSCST-NFNSQVINSHSVTIHV 114
>2pkd_A SLAM family member 5; signaling lymphocyte activation molecule,
IGV, immunoglobulin variable, IGC, immunoglobulin
constant, signaling protein; 2.04A {Homo sapiens}
Length = 111
Score = 31.8 bits (72), Expect = 0.16
Identities = 10/47 (21%), Positives = 22/47 (46%), Gaps = 3/47 (6%)
Query: 115 GRAKILD-DRSLQIENVGPQDEGLYICDV--ENLVGSISLRASLTVH 158
R L + +L I ++ +D G Y D+ + + + R +L ++
Sbjct: 63 ERIHALGPNYNLVISDLRMEDAGDYKADINTQADPYTTTKRYNLQIY 109
>1xt5_A Variable region-containing chitin-binding protein 3; innate
immunity, VCBP, primordial antigen receptor, florida
lancelet, amphioxus; 1.15A {Branchiostoma floridae}
Length = 135
Score = 32.5 bits (73), Expect = 0.16
Identities = 13/33 (39%), Positives = 18/33 (54%), Gaps = 2/33 (6%)
Query: 114 TGRAKI--LDDRSLQIENVGPQDEGLYICDVEN 144
GRA + L +L++ +V PQD G Y C V
Sbjct: 81 LGRASVANLAAPTLRLTHVHPQDGGRYWCQVAQ 113
>3q5y_A TCR N15 beta; IG, T cell receptor, antigen peptide/MHC, membrane,
immune S; HET: EPE; 1.90A {Mus musculus} PDB: 1nfd_B*
3q5t_A
Length = 240
Score = 33.4 bits (76), Expect = 0.17
Identities = 29/145 (20%), Positives = 49/145 (33%), Gaps = 19/145 (13%)
Query: 107 RDDGKMP---TGRAKILDDRSLQIENVGPQDEGLYIC---DVENLVGSISLRASLTVHLL 160
RD G +P + + + + + +D +Y C LTV
Sbjct: 56 RDKGFLPSRFSVQQFDDYHSEMNMSALELEDSAMYFCASSLRWGDEQYFGPGTRLTVLED 115
Query: 161 RDDFRA------EPKDTRVASGETALLECGPPKGQPEP-TLHWKKNGQFI------DLES 207
+ EP +A+ + A L C P+ L W NG+ + D ++
Sbjct: 116 LRNVTPPKVSLFEPSKAEIANKQKATLVCLARGFFPDHVELSWWVNGKEVHSGVSTDPQA 175
Query: 208 SKSLDLSRRTLGWLRVRPLYWNVAR 232
K + S LRV +W+ R
Sbjct: 176 YKESNYSYSLSSRLRVSATFWHNPR 200
>2q87_A CMRF35-H antigen; all-beta, immunoglobulin, IG-superfamily, IG-V,
NKP44-like, natural killer cell IG-like receptor,
inhibitory receptor; 1.70A {Homo sapiens}
Length = 110
Score = 31.8 bits (72), Expect = 0.18
Identities = 15/73 (20%), Positives = 25/73 (34%), Gaps = 6/73 (8%)
Query: 93 CR-VGGDPLPTILWRRDDGKMPTGRAKILDDR-----SLQIENVGPQDEGLYICDVENLV 146
CR I+ + GR I D ++ +EN+ +D G Y C V+
Sbjct: 32 CRPPQIFLCDKIVETKGSAGKRNGRVSIRDSPANLSFTVTLENLTEEDAGTYWCGVDTPW 91
Query: 147 GSISLRASLTVHL 159
+ V +
Sbjct: 92 LQDFHDPVVEVEV 104
>1xed_A Polymeric-immunoglobulin receptor; IG-like fold, immune system;
1.90A {Homo sapiens} SCOP: b.1.1.1
Length = 117
Score = 31.8 bits (72), Expect = 0.19
Identities = 12/48 (25%), Positives = 18/48 (37%), Gaps = 5/48 (10%)
Query: 115 GRAKILDDR-----SLQIENVGPQDEGLYICDVENLVGSISLRASLTV 157
GRA + + + I + D G Y C + +S SL V
Sbjct: 62 GRANLTNFPENGTFVVNIAQLSQDDSGRYKCGLGINSRGLSFDVSLEV 109
Score = 28.7 bits (64), Expect = 2.3
Identities = 12/36 (33%), Positives = 14/36 (38%)
Query: 363 DLRETDSGLYTCTASSESGETSWSASLSVEPRPGPH 398
L + DSG Y C S S+ SL V H
Sbjct: 81 QLSQDDSGRYKCGLGINSRGLSFDVSLEVLEHHHHH 116
>2nms_A CMRF35-like-molecule 1; IG-superfamily, IG-V, NKP44-like, myeloid
IG-like receptor, inhibitory receptor, myelo-monocytic
cells; 2.60A {Homo sapiens}
Length = 124
Score = 31.8 bits (72), Expect = 0.20
Identities = 14/106 (13%), Positives = 34/106 (32%), Gaps = 21/106 (19%)
Query: 73 FPISEPSDATVLSGSVVEFVCR----------------VGGDPLPTILWRRDDGKMPTGR 116
I+ P+ L + C + D + + ++ R
Sbjct: 4 PQITGPTTVNGLERGSLTVQCVYRSGWETYLKWWCRGAIWRDCKILVKTSGSEQEVKRDR 63
Query: 117 AKILDDR-----SLQIENVGPQDEGLYICDVENLVGSISLRASLTV 157
I D++ ++ +E++ D Y C +E + + +T+
Sbjct: 64 VSIKDNQKNRTFTVTMEDLMKTDADTYWCGIEKTGNDLGVTVQVTI 109
Score = 28.0 bits (62), Expect = 5.1
Identities = 8/36 (22%), Positives = 16/36 (44%)
Query: 363 DLRETDSGLYTCTASSESGETSWSASLSVEPRPGPH 398
DL +TD+ Y C + + ++++P P
Sbjct: 81 DLMKTDADTYWCGIEKTGNDLGVTVQVTIDPAPVTQ 116
>2wng_A Tyrosine-protein phosphatase non-receptor type substrate 1; signal
regulatory protein alpha, immunoglobulin superfamily,
phosphoprotein; HET: NAG; 2.49A {Homo sapiens}
Length = 327
Score = 33.4 bits (76), Expect = 0.21
Identities = 29/149 (19%), Positives = 37/149 (24%), Gaps = 25/149 (16%)
Query: 78 PSDATVLSGSVVEFVCRV-GGDPLPTILWRRDDGKM--------PTGRAKILDDR----- 123
+V +G C V P+ I W R G ++
Sbjct: 10 DKSVSVAAGESAILHCTVTSLIPVGPIQWFRGAGPARELIYNQKEGHFPRVTTVSESTKR 69
Query: 124 -----SLQIENVGPQDEGLYICDVEN-----LVGSISLRASLTVHLLRDDFRAEPKDTRV 173
S+ I N+ P D G Y C L+V R
Sbjct: 70 ENMDFSISISNITPADAGTYYCVKFRKGSPDTEFKSGAGTELSVRAKPSAPVVSGPAARA 129
Query: 174 ASGETALLECGPPKGQPEP-TLHWKKNGQ 201
T C P TL W KNG
Sbjct: 130 TPQHTVSFTCESHGFSPRDITLKWFKNGN 158
Score = 28.0 bits (62), Expect = 9.9
Identities = 28/261 (10%), Positives = 52/261 (19%), Gaps = 40/261 (15%)
Query: 259 RLSCFAEGS-PLPSVFWTQEGSQVL-----MFPGNAYGHLHVTQEG-------TLRIQGV 305
L C P+ + W + G+ V++ ++ I +
Sbjct: 22 ILHCTVTSLIPVGPIQWFRGAGPARELIYNQKEGHFPRVTTVSESTKRENMDFSISISNI 81
Query: 306 QKEDAGFFVCSALSVAGSTTVRAFLQ-VREFCVLPKGTFTLGQPNLATGNSDLRRIAC-- 362
DAG + C T + P C
Sbjct: 82 TPADAGTYYCVKFRKGSPDTEFKSGAGTELSVRAKPSAPVVSGPAARATPQHTVSFTCES 141
Query: 363 --------------DLRETDSGLYTCTASSESGETSWSASLSVEPRPGP-------HAVH 401
+ E ES S ++ V H
Sbjct: 142 HGFSPRDITLKWFKNGNELSDFQTNVDPVGESVSYSIHSTAKVVLTREDVHSQVICEVAH 201
Query: 402 RMPDSGLFPGPPAAPVILNTTRGSVTLGWGEPEPRGGGVAPVIGYTVEYFSSDLQTGWVV 461
G + R V +++ LQ W+
Sbjct: 202 VTLQGDPLRGTANLSETIRVPPTLEVTQ---QPVRAENQVNVTCQVRKFYPQRLQLTWLE 258
Query: 462 AAHRITSTSITVSDLKPDTSY 482
+ + + + D +Y
Sbjct: 259 NGNVSRTETASTVTENKDGTY 279
>2bnu_A TCR alpha chain, T-cell receptor alpha chain C region; superagonist
peptide T-cell vaccines, transmembrane, immunoglobulin
domain; 1.40A {Homo sapiens} PDB: 2bnq_D 2bnr_D 2f54_D
2pyf_A* 2pye_D* 2f53_D 2p5e_D* 2p5w_D* 3mv7_D 3mv8_D
3mv9_D 3utt_D 2cdg_A
Length = 203
Score = 32.7 bits (74), Expect = 0.21
Identities = 18/104 (17%), Positives = 33/104 (31%), Gaps = 23/104 (22%)
Query: 260 LSCFAEGSPLPSVFW-TQEGSQVLMFPGNAYGHLHVTQEG-------------TLRIQGV 305
L+C S + ++ W Q+ + L G TL I
Sbjct: 20 LNCSFTDSAIYNLQWFRQDPGKGLTSLLLIQSSQREQTSGRLNASLDKSSGRSTLYIAAS 79
Query: 306 QKEDAGFFVCSALSVAGSTTVRAFLQVREFCVLPKGTFTLGQPN 349
Q D+ ++C+ +G + + F +GT + P
Sbjct: 80 QPGDSATYLCAVRPTSGGSYIPTF---------GRGTSLIVHPY 114
Score = 28.8 bits (64), Expect = 4.1
Identities = 21/91 (23%), Positives = 30/91 (32%), Gaps = 20/91 (21%)
Query: 78 PSDATVLSGSVVEFVCRVGGDPLPTILW-RRDDGKMPT--------------GRAKILDD 122
P+ +V G + C + + W R+D GK T GR D
Sbjct: 7 PAALSVPEGENLVLNCSFTDSAIYNLQWFRQDPGKGLTSLLLIQSSQREQTSGRLNASLD 66
Query: 123 R-----SLQIENVGPQDEGLYICDVENLVGS 148
+ +L I P D Y+C V G
Sbjct: 67 KSSGRSTLYIAASQPGDSATYLCAVRPTSGG 97
>1q8m_A Triggering receptor expressed on myeloid cells 1; V-type IG-like
domain, immunoglobulin-like, immune system receptor;
HET: GSH; 2.60A {Homo sapiens} SCOP: b.1.1.1
Length = 127
Score = 31.7 bits (72), Expect = 0.25
Identities = 13/53 (24%), Positives = 21/53 (39%), Gaps = 8/53 (15%)
Query: 115 GRAKILDDRS-----LQIENVGPQDEGLYICDVENL---VGSISLRASLTVHL 159
GR + D +++ N+ +D GLY C + + R L V L
Sbjct: 68 GRIILEDYHDHGLLRVRMVNLQVEDSGLYQCVIYQPPKEPHMLFDRIRLVVTL 120
>3dlq_R Interleukin-22 receptor subunit alpha-1; cytokine-receptor complex,
fibronectin-III, cytokine, glycoprotein, polymorphism,
secreted, membrane; 1.90A {Homo sapiens} PDB: 3dgc_R*
Length = 211
Score = 32.4 bits (73), Expect = 0.31
Identities = 23/151 (15%), Positives = 43/151 (28%), Gaps = 12/151 (7%)
Query: 362 CDLRETDSGLYTC-----TASSESGETSWSASLSVEPRPGPHAVHRMPDSGLFPGPPAAP 416
C+L L TA S G ++ + H + PD +
Sbjct: 62 CNLTVETGNLTELYYARVTAVSAGGRSATKMTDRFSSLQ--HTTLKPPDVTCISKVRSIQ 119
Query: 417 VILNTTRGSVTLGWGEPEPRGGGVAPVIGYTVEYFSSDLQTGWVVAAHRITSTSITVSDL 476
+I++ T + G G + + Y +E + + L
Sbjct: 120 MIVHPTPTPIRAGDGHRLTLED-IFHDLFYHLELQVNRTYQMHL----GGKQREYEFFGL 174
Query: 477 KPDTSYMFIVRAENSHGLGIPSPVSPITRTL 507
PDT ++ + +P +TL
Sbjct: 175 TPDTEFLGTIMILVPTWAKESAPYMCRVKTL 205
>1hkf_A NKP44, NK cell activating receptor; natural cytotoxicity receptor,
immunoglobulin domain; 2.2A {Homo sapiens} SCOP: b.1.1.1
Length = 122
Score = 31.5 bits (71), Expect = 0.31
Identities = 11/51 (21%), Positives = 22/51 (43%), Gaps = 6/51 (11%)
Query: 115 GRAKILDDR-----SLQIENVGPQDEGLYICDVENLVGSISLRASLTVHLL 160
R I DD ++ + ++ +D G Y C + S+ S+ +L+
Sbjct: 71 SRFTIWDDPDAGFFTVTMTDLREEDSGHYWCRIYR-PSDNSVSKSVRFYLV 120
>1i1c_A IGG2A, IG gamma-2A chain C region; FC, immune system; HET: NAG FUL
BMA MAN FUC; 2.70A {Rattus norvegicus} SCOP: b.1.1.2
b.1.1.2 PDB: 1i1a_D*
Length = 239
Score = 31.8 bits (72), Expect = 0.45
Identities = 24/149 (16%), Positives = 41/149 (27%), Gaps = 26/149 (17%)
Query: 75 ISEPS-DATVLSGSVVEFVCRVGG----DPLPTILWRRDDGKMPTGRAKILDDRS----- 124
I P + G + C V DP W DD ++ T + + +S
Sbjct: 20 IFPPKTKDVLGGGLTPKVTCVVVDISQNDPEVRFSWFIDDVEVHTAQTHAPEKQSNSTLR 79
Query: 125 ----LQIENVGPQDEGLYICDVENLVGSISLRASLTVHLLRDDFRAEPKDTRV------- 173
L I + + C V + + A + + + +
Sbjct: 80 SVSELPIVERDWLNGKTFKCKVNS----GAFPAPIEKSISKPEGTPRGPQVYTMAPPKEE 135
Query: 174 ASGETALLECGPPKGQPEP-TLHWKKNGQ 201
+ + C P WK NGQ
Sbjct: 136 MTQSQVSITCMVKGFYPPDIYTEWKMNGQ 164
Score = 29.1 bits (65), Expect = 4.3
Identities = 13/102 (12%), Positives = 26/102 (25%), Gaps = 17/102 (16%)
Query: 259 RLSC----FAEGSPLPSVFWTQEGSQVLM--------FPGNAYGHLHVTQEGTLRIQGVQ 306
+++C ++ P W + +V + L I
Sbjct: 36 KVTCVVVDISQNDPEVRFSWFIDDVEVHTAQTHAPEKQSNSTLR-----SVSELPIVERD 90
Query: 307 KEDAGFFVCSALSVAGSTTVRAFLQVREFCVLPKGTFTLGQP 348
+ F C S A + + E +T+ P
Sbjct: 91 WLNGKTFKCKVNSGAFPAPIEKSISKPEGTPRGPQVYTMAPP 132
>2gy5_A Angiopoietin-1 receptor; ligand-binding domain, transferase; HET:
NAG NDG; 2.90A {Homo sapiens} PDB: 2gy7_B*
Length = 423
Score = 32.4 bits (73), Expect = 0.46
Identities = 17/73 (23%), Positives = 32/73 (43%), Gaps = 7/73 (9%)
Query: 92 VCRVGGDPLPT---ILWRRDDGKMPTGRAKILDDRS----LQIENVGPQDEGLYICDVEN 144
+C+ G PLPT + + DG + + D I + P D G+++C V
Sbjct: 347 ICKASGWPLPTNEEMTLVKPDGTVLHPKDFNHTDHFSVAIFTIHRILPPDSGVWVCSVNT 406
Query: 145 LVGSISLRASLTV 157
+ G + +++V
Sbjct: 407 VAGMVEKPFNISV 419
>1ow0_A IG alpha-1 chain C region; IGA1, fcari, CD89, antibody,
immunoglobulin-LIK immune system; HET: NAG FUL BMA GAL
SIA FUC MAN NDG; 3.10A {Homo sapiens} SCOP: b.1.1.2
b.1.1.2 PDB: 2qej_A*
Length = 214
Score = 31.8 bits (72), Expect = 0.48
Identities = 28/153 (18%), Positives = 40/153 (26%), Gaps = 32/153 (20%)
Query: 75 ISEPSDATVLSGSVVEFVCRVGGDPLP---TILWRRDDGKMPTGRAKILD-------DRS 124
+ P+ +L GS C + G T W GK D
Sbjct: 8 LHRPALEDLLLGSEANLTCTLTGLRDASGVTFTWTPSSGKSAVQGPPERDLCGCYSVSSV 67
Query: 125 LQIENVGPQDEGLYICDVEN------LVGSISL---RASLTVHLLRDDFRAEPKDTRVAS 175
L + C L ++S VHLL P +A
Sbjct: 68 LPGCAEPWNHGKTFTCTAAYPESKTPLTATLSKSGNTFRPEVHLL------PPPSEELAL 121
Query: 176 GETALLEC----GPPKGQPEPTLHWKKNGQFID 204
E L C PK + + W + Q +
Sbjct: 122 NELVTLTCLARGFSPK---DVLVRWLQGSQELP 151
Score = 30.2 bits (68), Expect = 1.7
Identities = 15/90 (16%), Positives = 22/90 (24%), Gaps = 14/90 (15%)
Query: 260 LSCFAEGSPLPS---VFWTQEGSQVLM------FPGNAYGHLHVTQEGTLRIQGVQKEDA 310
L+C G S WT + + Y + L
Sbjct: 24 LTCTLTGLRDASGVTFTWTPSSGKSAVQGPPERDLCGCY-----SVSSVLPGCAEPWNHG 78
Query: 311 GFFVCSALSVAGSTTVRAFLQVREFCVLPK 340
F C+A T + A L P+
Sbjct: 79 KTFTCTAAYPESKTPLTATLSKSGNTFRPE 108
>1nko_A Sialic acid binding IG-like lectin 7; immunoglobulin, siglec7,
immune system; 1.45A {Homo sapiens} SCOP: b.1.1.1 PDB:
2g5r_A* 1o7v_A* 2df3_A* 1o7s_A* 2hrl_A*
Length = 132
Score = 31.1 bits (70), Expect = 0.49
Identities = 19/102 (18%), Positives = 27/102 (26%), Gaps = 30/102 (29%)
Query: 73 FPISEPSDATVLSGSVVEFVCRV------GGDPLP-TILWRRDDGKMPT----------- 114
+ ++ S TV G V C D P W R +
Sbjct: 8 YSLTMQSSVTVQEGMCVHVRCSFSYPVDSDTDSDPVHGYWFRAGNDISWKAPVATNNPAW 67
Query: 115 -------GRAKILDDR-----SLQIENVGPQDEGLYICDVEN 144
R +L D +L I + D G Y +E
Sbjct: 68 AVQEETRDRFHLLGDPQTKNCTLSIRDARMSDAGRYFFRMEK 109
>3r08_E T-cell surface glycoprotein CD3 epsilon chain; antibody, T-cell
receptor, signalling, immune SY; 4.10A {Cricetulus
migratorius}
Length = 82
Score = 30.0 bits (67), Expect = 0.52
Identities = 14/41 (34%), Positives = 19/41 (46%), Gaps = 3/41 (7%)
Query: 175 SGETALLECGPPKGQPEPTLHWKKNGQFIDLESSKSLDLSR 215
SG + L C P + L W+KNGQ + + K L L
Sbjct: 13 SGTSVELTC-PL--DSDENLKWEKNGQELPQKHDKHLVLQD 50
>2w59_A IGY FCU3-4; immunoglobulin, avian, immune system; HET: NAG MAN;
1.75A {Gallus gallus}
Length = 231
Score = 31.5 bits (71), Expect = 0.68
Identities = 15/150 (10%), Positives = 36/150 (24%), Gaps = 30/150 (20%)
Query: 75 ISEPSDATVLSGSVVEFVCRVGGDPLP---TILWRRDDGKMPTGRAKILDDRS------- 124
PS + + C V P ++ W R+ +L +
Sbjct: 17 AIPPSPGELYISLDAKLRCLVVNLPSDSSLSVTWTREKSGNLRPDPMVLQEHFNGTYSAS 76
Query: 125 --LQIENVGPQDEGLYICDVEN----------LVGSISLRASLTVHLLRDDFRAEPKDTR 172
+ + + C V++ + + ++
Sbjct: 77 SAVPVSTQDWLSGERFTCTVQHEELPLPLSKSVYRNTGPTTPPLIYPF-------APHPE 129
Query: 173 VASGETALLECGPPKGQPEP-TLHWKKNGQ 201
S L C +P + W ++ +
Sbjct: 130 ELSLSRVTLSCLVRGFRPRDIEIRWLRDHR 159
>1bec_A 14.3.D T cell antigen receptor; T cell receptor; 1.70A {Mus
musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1jck_A 1l0x_A
1sbb_A 1l0y_A 3c6l_B 1mwa_B* 1g6r_B* 1tcr_B* 2ckb_B
2q86_B* 1lp9_F 2j8u_F 2jcc_F 2uwe_F 3mbe_D* 1d9k_B*
2aq3_A 3mc0_A 3byt_A 3bzd_A ...
Length = 238
Score = 31.5 bits (71), Expect = 0.70
Identities = 29/127 (22%), Positives = 45/127 (35%), Gaps = 18/127 (14%)
Query: 124 SLQIENVGPQDEGLYICDVENLVGSISLRASL------TVHLLRDDFRA-----EPKDTR 172
SL +E P +Y C GS + + + LR EP
Sbjct: 73 SLILELATPSQTSVYFCASGGGRGSYAEQFFGPGTRLTVLEDLRQVTPPKVSLFEPSKAE 132
Query: 173 VASGETALLECGPPKGQPEP-TLHWKKNGQFI------DLESSKSLDLSRRTLGWLRVRP 225
+A+ + A L C P+ L W NG+ + D ++ K + S LRV
Sbjct: 133 IANKQKATLVCLARGFFPDHVELSWWVNGKEVHSGVSTDPQAYKESNYSYCLSSRLRVSA 192
Query: 226 LYWNVAR 232
+W+ R
Sbjct: 193 TFWHNPR 199
>3lij_A Calcium/calmodulin dependent protein kinase with A kinase domain
and 4 calmodulin...; transferase, calcium dependent
protein kinase; HET: ANP; 1.90A {Cryptosporidium parvum}
PDB: 3hzt_A* 3dxn_A 3l19_A*
Length = 494
Score = 31.6 bits (72), Expect = 0.76
Identities = 11/43 (25%), Positives = 20/43 (46%), Gaps = 2/43 (4%)
Query: 31 ISGDPGFDSRRSRSIFGSVLGARGALSDDQWKLIAKEA--LIK 71
++G P F + + I V + +WK +++ A LIK
Sbjct: 231 LAGYPPFGGQTDQEILRKVEKGKYTFDSPEWKNVSEGAKDLIK 273
>3o3u_N Maltose-binding periplasmic protein, advanced Gly END
product-specific receptor; RAGE, AGER, scavenger
receptor; HET: MLR; 1.50A {Escherichia coli} PDB: 3cjj_A
2l7u_A* 2e5e_A
Length = 581
Score = 31.8 bits (72), Expect = 0.76
Identities = 22/89 (24%), Positives = 38/89 (42%), Gaps = 4/89 (4%)
Query: 116 RAKILDDRSLQIENVGPQDEGLYICDVENLVGSISLRASLTVHLLRDDFRAE---PKDTR 172
A++L + SL + VG QDEG++ C N G + +++ V + + + E
Sbjct: 425 VARVLPNGSLFLPAVGIQDEGIFRCQAMNRNGKET-KSNYRVRVYQIPGKPEIVDSASEL 483
Query: 173 VASGETALLECGPPKGQPEPTLHWKKNGQ 201
A + C P TL W +G+
Sbjct: 484 TAGVPNKVGTCVSEGSYPAGTLSWHLDGK 512
>1a64_A CD2; domain swapping, hinge loop, oligomer evolution; 2.00A {Rattus
norvegicus} SCOP: b.1.1.1 PDB: 1a7b_A 1cdc_B 1a6p_A
1t6w_A
Length = 97
Score = 29.6 bits (66), Expect = 0.84
Identities = 17/72 (23%), Positives = 31/72 (43%), Gaps = 9/72 (12%)
Query: 98 DPLPTILWRRDDGKM---------PTGRAKILDDRSLQIENVGPQDEGLYICDVENLVGS 148
D + + W R + +G +IL + L+I+N+ D G Y V + G+
Sbjct: 25 DDIDEVRWERGSTLVAEFKRKPFLKSGAFEILANGDLKIKNLTRDDSGTYNVTVYSTNGT 84
Query: 149 ISLRASLTVHLL 160
L +L + +L
Sbjct: 85 RILDKALDLRIL 96
>1smo_A Triggering receptor expressed on myeloid cells 1; activating
receptors, TREM-1, innate immune system receptor,
system; HET: TLA; 1.47A {Homo sapiens} SCOP: b.1.1.1
Length = 119
Score = 29.8 bits (67), Expect = 0.85
Identities = 12/51 (23%), Positives = 20/51 (39%), Gaps = 8/51 (15%)
Query: 115 GRAKILDDRS-----LQIENVGPQDEGLYICDVENL---VGSISLRASLTV 157
GR + D +++ N+ +D GLY C + + R L V
Sbjct: 63 GRIILEDYHDHGLLRVRMVNLQVEDSGLYQCVIYQPPKEPHMLFDRIRLVV 113
>2ptt_B Natural killer cell receptor 2B4; CD244, CD48, NK cell receptor,
X-RAY, immune system; 1.63A {Mus musculus} PDB: 2ptu_A
1z2k_A
Length = 112
Score = 29.7 bits (66), Expect = 0.92
Identities = 9/30 (30%), Positives = 16/30 (53%)
Query: 121 DDRSLQIENVGPQDEGLYICDVENLVGSIS 150
D +L I++ QD G Y+ ++ N G +
Sbjct: 73 GDFALSIKSAKLQDSGHYLLEITNTGGKVC 102
>3s1s_A Restriction endonuclease bpusi; PD--(D/E)XK catalytic motif,
gamma-N6M-adenosine methyltrans S-adenosyl-methionine
binding, hydrolase; HET: SAH; 2.35A {Bacillus pumilus}
Length = 878
Score = 31.4 bits (70), Expect = 0.95
Identities = 7/30 (23%), Positives = 10/30 (33%)
Query: 398 HAVHRMPDSGLFPGPPAAPVILNTTRGSVT 427
+ P GLF V+ +GS
Sbjct: 491 EHIFLYPREGLFEEVIKDTVVFVGRKGSSV 520
>3p2t_A Leukocyte immunoglobulin-like receptor subfamily 4; LILR, IG,
inhibitory receptor, disulfide, immune system; 1.70A
{Homo sapiens}
Length = 196
Score = 30.6 bits (69), Expect = 0.99
Identities = 20/87 (22%), Positives = 30/87 (34%), Gaps = 7/87 (8%)
Query: 59 DQWKLIAKEALIKPFPISEPSDATVLSGSVVEFVCRVGGDPLPTILWRRDDGKMPTGRAK 118
D +L+ A KP + PS V SG V +C+ P+ T L ++ P +
Sbjct: 88 DPLELVMTGAYSKPTLSALPS-PLVTSGKSVTLLCQ-SRSPMDTFLLCKERAAHPLLCLR 145
Query: 119 ILDDRS-----LQIENVGPQDEGLYIC 140
+ V G Y C
Sbjct: 146 SEHGAQQHQAEFPMSPVTSVHGGTYRC 172
>3osk_A Cytotoxic T-lymphocyte protein 4; beta sandwich, homodimer,
immunoglobulin superfamily (beta S fold, receptor,
signalling, B7-1(CD80), B7-2(CD86); HET: NAG; 1.80A
{Homo sapiens} PDB: 2x44_D 1i85_C 1ah1_A* 1i8l_C* 3bx7_C
Length = 130
Score = 29.7 bits (66), Expect = 1.1
Identities = 21/95 (22%), Positives = 34/95 (35%), Gaps = 24/95 (25%)
Query: 75 ISEPSDATVLSGSVVEFVCRVGGDPLPTI----LWRRDDGKMP---------TGRAKILD 121
+++P+ S + FVC T + R+ D ++ LD
Sbjct: 5 VAQPAVVLASSRGIASFVCEYASPGKATEVRVTVLRQADSQVTEVCAATYMMGNELTFLD 64
Query: 122 DR-----------SLQIENVGPQDEGLYICDVENL 145
D +L I+ + D GLYIC VE +
Sbjct: 65 DSICTGTSSGNQVNLTIQGLRAMDTGLYICKVELM 99
>2gj7_F Glycoprotein E; FC receptor, low resolution, immune
system-virus-viral prote complex; HET: NAG BMA MAN GAL
FUC; 5.00A {Human herpesvirus 1} SCOP: b.1.1.1
Length = 401
Score = 31.2 bits (69), Expect = 1.1
Identities = 21/67 (31%), Positives = 24/67 (35%), Gaps = 2/67 (2%)
Query: 363 DLRETDSGLYTCTASSESGETSWSAS--LSVEPRPGPHAVHRMPDSGLFPGPPAAPVILN 420
+RETDSGLYT + AS L V+P P P D L
Sbjct: 111 GVRETDSGLYTLSVGDIKDPARQVASVVLVVQPAPVPTPPPTPADYDEDDNDEGEDESLA 170
Query: 421 TTRGSVT 427
T S T
Sbjct: 171 GTPASGT 177
Score = 30.4 bits (67), Expect = 2.2
Identities = 22/138 (15%), Positives = 37/138 (26%), Gaps = 2/138 (1%)
Query: 97 GDPLPTILWRRDDGKMPTGRAKILDDRSLQIENVGPQDEGLYICDVENLVGSISLRASLT 156
P P+ + RA + +RSL I V D GLY V ++ AS+
Sbjct: 80 APPAPSATGGLRTDFVWQERA-AVVNRSLVIHGVRETDSGLYTLSVGDIKDPARQVASVV 138
Query: 157 VHLLRDDFRAEPKDTRVASGETALLECGPPKGQPEPTLHWKKNGQFIDLESSKSLDLSRR 216
+ + P + + + S S
Sbjct: 139 LVVQPAPVPTPPPTPADYDEDDNDEGEDESLAGTPASGTPRLPPPPAPPRSWPSAPEVSH 198
Query: 217 TLGW-LRVRPLYWNVARP 233
G +R+ + P
Sbjct: 199 VRGVTVRMETPEAILFSP 216
>3bp6_A Programmed cell death protein 1; PD-1, PD-L2, complex,
costimulation, glycoprotein, immunoglo domain, membrane,
transmembrane, receptor; 1.60A {Mus musculus} PDB:
3rnk_A 3sbw_A 3bp5_A 1npu_A 3rnq_A
Length = 117
Score = 29.3 bits (66), Expect = 1.6
Identities = 6/29 (20%), Positives = 15/29 (51%)
Query: 299 TLRIQGVQKEDAGFFVCSALSVAGSTTVR 327
+ I ++ D+G ++C A+S+ +
Sbjct: 74 HMNILDTRRNDSGIYLCGAISLHPKLKIE 102
>1zox_A CLM-1; IG-superfamily, IG-V, NKP44-like, myeloid IG-like receptor,
structural genomics, PSI, protein structure initiative;
2.10A {Mus musculus}
Length = 113
Score = 28.9 bits (65), Expect = 1.6
Identities = 8/48 (16%), Positives = 21/48 (43%), Gaps = 5/48 (10%)
Query: 115 GRAKILDDR-----SLQIENVGPQDEGLYICDVENLVGSISLRASLTV 157
R I D++ ++ +E++ D G+Y C + + ++ +
Sbjct: 61 NRVSIRDNQRDFIFTVTMEDLRMSDAGIYWCGITKGGLDPMFKVTVNI 108
Score = 27.4 bits (61), Expect = 5.9
Identities = 9/33 (27%), Positives = 19/33 (57%)
Query: 363 DLRETDSGLYTCTASSESGETSWSASLSVEPRP 395
DLR +D+G+Y C + + + ++++ P P
Sbjct: 80 DLRMSDAGIYWCGITKGGLDPMFKVTVNIGPVP 112
>2wqr_A IG epsilon chain C region; immune system, immunoglobulin domain,
glycoprotein; HET: NAG BMA MAN PG4; 1.90A {Homo sapiens}
PDB: 2y7q_B* 1o0v_A* 3h9y_A* 3h9z_A* 3ha0_A* 1fp5_A
1f6a_B 1g84_A
Length = 323
Score = 30.4 bits (68), Expect = 1.6
Identities = 13/83 (15%), Positives = 22/83 (26%), Gaps = 13/83 (15%)
Query: 75 ISEPSDATVLSGSVVEFVCRVGG----DPLPTILWRRDDGKMPTGRAKILDDRS------ 124
+S PS + C V + W R GK + + +
Sbjct: 117 LSRPSPFDLFIRKSPTITCLVVDLAPSKGTVQLTWSRASGKPVNHSTRKEEKQRNGTLTV 176
Query: 125 ---LQIENVGPQDEGLYICDVEN 144
L + + Y C V +
Sbjct: 177 TSTLPVGTRDWIEGETYQCRVTH 199
>3q5i_A Protein kinase; CDPK, malaria, phosphotransferase, structural
genomics, structural genomic consortium, SGC,
transferase; HET: ANP; 2.10A {Plasmodium berghei}
Length = 504
Score = 30.8 bits (70), Expect = 1.7
Identities = 13/42 (30%), Positives = 18/42 (42%), Gaps = 2/42 (4%)
Query: 32 SGDPGFDSRRSRSIFGSVLGARGALSDDQWKLIAKEA--LIK 71
G P F + + I V + + WK I+ EA LIK
Sbjct: 242 CGYPPFGGQNDQDIIKKVEKGKYYFDFNDWKNISDEAKELIK 283
>3kg5_A B-cell antigen receptor complex-associated protei chain; CD79B,
IG-beta, BCR, immunoglobulin domain, protein binding;
3.20A {Homo sapiens}
Length = 134
Score = 29.3 bits (66), Expect = 1.7
Identities = 15/60 (25%), Positives = 22/60 (36%), Gaps = 19/60 (31%)
Query: 297 EGTLRIQGVQKEDAGFFVCSALSVAGSTTVRAF-----LQVREFCVLPKGTFTLGQPNLA 351
TL IQG++ ED G + C +T+ L+V +G LA
Sbjct: 79 LATLTIQGIRFEDNGIYFCQ--QKCNNTSEVYQGCGTELRV------------MGFSTLA 124
>3nyv_A Calmodulin-domain protein kinase 1; serine/threonine protein
kinase, transferase, calcium-bindin binding, EF hand,
bumped kinase inhibitor; HET: MSE DTQ; 1.88A {Toxoplasma
gondii} PDB: 3i79_A* 3i7b_A* 3n51_A* 3i7c_A* 3sx9_A*
3sxf_A* 3t3u_A* 3t3v_A* 3upx_A* 3upz_A* 3v51_A* 3v5p_A*
3v5t_A* 3ku2_A* 3hx4_A*
Length = 484
Score = 30.0 bits (68), Expect = 2.5
Identities = 12/43 (27%), Positives = 19/43 (44%), Gaps = 2/43 (4%)
Query: 31 ISGDPGFDSRRSRSIFGSVLGARGALSDDQWKLIAKEA--LIK 71
+SG P F+ I V + QWK +++ A LI+
Sbjct: 221 LSGCPPFNGANEYDILKKVEKGKYTFELPQWKKVSESAKDLIR 263
>3dmm_C T-cell surface glycoprotein CD8 alpha chain; T cell CO-receptor
CD8AB MHC complex, immune response, membrane, MHC I,
phosphoprotein, transmembrane; 2.60A {Mus musculus}
Length = 166
Score = 29.2 bits (65), Expect = 2.5
Identities = 14/67 (20%), Positives = 24/67 (35%), Gaps = 4/67 (5%)
Query: 299 TLRIQGVQKEDAGFFVCSALS---VAGSTTVRAFLQVREFCVLPKGTFTLGQPNLATGNS 355
L + KE+ G++ CS +S + S+ V +V P T + +
Sbjct: 91 VLTLNKFSKENEGYYFCSVISNSVMYFSSVVPVLQKVNSTTTKP-VLRTPSPVHPTGTSQ 149
Query: 356 DLRRIAC 362
R C
Sbjct: 150 PQRPEDC 156
>1nkr_A P58-CL42 KIR; inhibitory receptor, natural killer cells,
immunological receptors, immunoglobulin fold; 1.70A
{Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1m4k_A 1efx_D
2dli_A 2dl2_A 3h8n_A
Length = 201
Score = 29.5 bits (66), Expect = 2.5
Identities = 8/52 (15%), Positives = 15/52 (28%), Gaps = 5/52 (9%)
Query: 365 RETDSGLYTCTASSESGETSWSAS-----LSVEPRPGPHAVHRMPDSGLFPG 411
+ +G Y C S SA + + ++ P + G
Sbjct: 71 TQDLAGTYRCYGSVTHSPYQVSAPSDPLDIVIIGLYEKPSLSAQPGPTVLAG 122
>1r8j_A KAIA; circadian clock protein; 2.03A {Synechococcus elongatus pcc
7942} SCOP: a.186.1.1 c.23.1.5 PDB: 1m2e_A 1m2f_A
Length = 289
Score = 29.6 bits (66), Expect = 2.6
Identities = 22/113 (19%), Positives = 39/113 (34%), Gaps = 14/113 (12%)
Query: 254 HPRVNRLSCFAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFF 313
V +L EG +P++ S+ P H L + Q E +
Sbjct: 69 RAVVQQLC--FEGVVVPAIVVGDRDSEDPDEPAKEQ-LYH---SAELHLGIHQLEQLPYQ 122
Query: 314 VCSALSVAGSTTVRAFLQVREFCVLPKGTFTLGQPNLATGNSDLRRIACDLRE 366
V +AL+ FL++ + +G + +S R +A L+E
Sbjct: 123 VDAALA--------EFLRLAPVETMADHIMLMGANHDPELSSQQRDLAQRLQE 167
>2q86_A Valpha14 TCR; INKT cells, TCR, glycolipid recognition, innate
immunity, IM system; HET: NAG BMA MAN FUC; 1.85A {Mus
musculus} PDB: 3quy_C* 3o9w_C* 3qux_C* 3o8x_C* 3quz_C*
3rtq_C* 3rzc_C* 3ta3_C* 3tvm_C* 3qi9_C* 3ard_C* 3are_C*
3arf_C* 3arg_C* 3he6_C* 3he7_C* 3arb_C* 3scm_C* 3sda_C*
3sdc_C* ...
Length = 229
Score = 29.3 bits (65), Expect = 2.8
Identities = 13/72 (18%), Positives = 20/72 (27%), Gaps = 14/72 (19%)
Query: 260 LSCFAEGSPLPSVFWT-QEGSQVLMFPGNAYGHLHVTQEG-------------TLRIQGV 305
L C +P + W Q+ + L+ T G TL I
Sbjct: 21 LQCNYSVTPDNHLRWYKQDTGKGLVLLTVLVDQKDKTSNGRYSATLDKDAKHSTLHITAT 80
Query: 306 QKEDAGFFVCSA 317
+D + C
Sbjct: 81 LLDDTATYFCVV 92
>4ei6_A Valpha1 XV19 type II natural killer T cell recept variable domain,
human constant...; natural killer T cell receptor,
immune system; 1.60A {Mus musculus} PDB: 4ei5_C 4elk_A
4elm_E* 3qeu_A 1ao7_D 3qdj_D 3qdg_D 3qfj_D 1qsf_D
1qse_D* 3d39_D* 3d3v_D* 3h9s_D 3pwp_D 2gj6_D 3utp_D*
3uts_D 1qrn_D 3hg1_D 3rdt_A ...
Length = 208
Score = 29.2 bits (65), Expect = 3.0
Identities = 19/94 (20%), Positives = 30/94 (31%), Gaps = 13/94 (13%)
Query: 260 LSCFAEGSPLPSVFWTQ----EGSQVLMF--------PGNAYGHLHVTQ-EGTLRIQGVQ 306
L+C + +W + EG + LM G HL+ +L I+ Q
Sbjct: 22 LNCTSSDRNFQYFWWYRQHSGEGPKALMSIFSDGDKKEGRFTAHLNKASLHVSLHIRDSQ 81
Query: 307 KEDAGFFVCSALSVAGSTTVRAFLQVREFCVLPK 340
D+ + C+A F V P
Sbjct: 82 PSDSALYFCAASEQNNYAQGLTFGLGTRVSVFPY 115
Score = 28.5 bits (63), Expect = 5.5
Identities = 18/82 (21%), Positives = 25/82 (30%), Gaps = 19/82 (23%)
Query: 78 PSDATVLSGSVVEFVCRVGGDPLPTILW-RRDDGKMPT-------------GRAKILDDR 123
P +V G + C W R+ G+ P GR ++
Sbjct: 9 PESLSVPEGGMASLNCTSSDRNFQYFWWYRQHSGEGPKALMSIFSDGDKKEGRFTAHLNK 68
Query: 124 -----SLQIENVGPQDEGLYIC 140
SL I + P D LY C
Sbjct: 69 ASLHVSLHIRDSQPSDSALYFC 90
>3cjy_A Putative thioesterase; YP_496845.1, structural genomics, JOI for
structural genomics, JCSG; HET: MSE PGE; 1.70A
{Novosphingobium aromaticivorans}
Length = 259
Score = 29.5 bits (67), Expect = 3.1
Identities = 4/37 (10%), Positives = 11/37 (29%), Gaps = 5/37 (13%)
Query: 387 ASLSVEPRPGPHAVHRMPDSGLFPGPPAAPVILNTTR 423
A+ +V ++ + P + + L
Sbjct: 48 AAETVGRPVVQGSLQ-----FVSFTPLGSVLDLTVEV 79
>3htv_A D-allose kinase, allokinase; NP_418508.1, structural genomics,
joint CEN structural genomics, JCSG, protein structure
initiative; HET: MSE; 1.95A {Escherichia coli k-12}
Length = 310
Score = 29.5 bits (67), Expect = 3.2
Identities = 12/44 (27%), Positives = 16/44 (36%), Gaps = 6/44 (13%)
Query: 493 GLGIPSPVSPITRT------LGLNSLVPQHLLDEARARLGTKVV 530
+G P+ VS RT L L + L D+ L V
Sbjct: 69 VMGFPALVSKDKRTIISTPNLPLTAADLYDLADKLENTLNCPVE 112
>3brd_A LIN-12 and GLP-1 phenotype protein 1, isoform A; protein-DNA
complex, signaling, transcription, notch; HET: DNA;
2.21A {Caenorhabditis elegans} SCOP: b.1.18.1 b.2.5.8
b.42.7.1 PDB: 2fo1_A 1ttu_A* 3brf_A*
Length = 477
Score = 29.4 bits (65), Expect = 3.6
Identities = 25/110 (22%), Positives = 41/110 (37%), Gaps = 8/110 (7%)
Query: 39 SRRSRSIFGSVLGARGALSDDQW-----KLIAKEALIKPFPISEPSDATVLSGSVVEFVC 93
S+ + + V G S +W L E ++ D V GSVV+ V
Sbjct: 214 SQTVSTRYLHVEGNAFHASSTKWGAFTIHLFDDERGLQETDNFAVRDGFVYYGSVVKLVD 273
Query: 94 RVGGDPLPTILWRRDDGKMPTGRAKILDDRSLQIENVG---PQDEGLYIC 140
V G LP + R+ D + A ++ Q+ +E +Y+C
Sbjct: 274 SVTGIALPRLRIRKVDKQQVILDASCSEEPVSQLHKCAFQMIDNELVYLC 323
>3s9d_B Interferon alpha/beta receptor 2; human, type I interferons, IFNA2,
ifnar2, SUB-complex of the interferon signaling complex;
2.00A {Homo sapiens} PDB: 1n6u_A 1n6v_A 2hym_A 2ksx_B
2kz1_B 2lag_B 3se4_C* 3se3_C* 3s8w_A*
Length = 199
Score = 28.9 bits (64), Expect = 3.8
Identities = 25/146 (17%), Positives = 41/146 (28%), Gaps = 20/146 (13%)
Query: 362 CDL-RETDSGLYTCTA---SSESGETSWSASLSVEPRPGPHAVHRMPDSGLFPGPPAAPV 417
CDL E S T +S S + PP +
Sbjct: 60 CDLTDEWRSTHEAYVTVLEGFSGNTTLFSCSHNFWLAIDMS-----------FEPPEFEI 108
Query: 418 ILNTTRGSVTLGWGEPEPRGGGVAPVIGYTVEYFSSDLQTGWVVAAHRITS--TSITVSD 475
+ T +V + P + + +E S + S + +
Sbjct: 109 VGFTNHINVMVK--FPSIVEEELQFDLSLVIEEQSEGIVKKHKPEIKGNMSGNFTYIIDK 166
Query: 476 LKPDTSYMFIVRAE-NSHGLGIPSPV 500
L P+T+Y V E + I SP+
Sbjct: 167 LIPNTNYCVSVYLEHSDEQAVIKSPL 192
>1hhn_A Calreticulin; molecular chaperone; NMR {Rattus norvegicus} SCOP:
b.104.1.1 PDB: 1k9c_A 1k91_A
Length = 101
Score = 27.5 bits (61), Expect = 4.2
Identities = 18/66 (27%), Positives = 22/66 (33%), Gaps = 11/66 (16%)
Query: 196 WKKNGQFIDLESSKSLDLSRRTLG-WLR---VRPLYWNVARPRANLNPRYIGRKMASLLI 251
W K D ++ K D G W P Y +PR NP Y G
Sbjct: 32 WDKPEHIPDPDAKKPEDWDEEMDGEWEPPVIQNPEYKGEWKPRQIDNPDYKG-------T 84
Query: 252 WNHPRV 257
W HP +
Sbjct: 85 WIHPEI 90
>3f8u_B Tapasin; endoplasmic reticulum, glycoprotein, immunoglobulin
domain, microsome, protein disulfide isomerase,
thioredoxin-like FO like domain; HET: NAG; 2.60A {Homo
sapiens}
Length = 401
Score = 29.2 bits (64), Expect = 4.2
Identities = 23/135 (17%), Positives = 36/135 (26%), Gaps = 27/135 (20%)
Query: 252 WNHPRVNRLSCFAEGSPLPSVFWTQ----EGSQVLMFPGNAYGHLHVTQEG--------- 298
+ P S A G P + W + +G +L G + QEG
Sbjct: 184 YMPPTSEAASSLAPGPPPFGLEWRRQHLGKGHLLLAATPGLNGQMPAAQEGAVAFAAWDD 243
Query: 299 -----------TLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVREFCVLPKGTFTLGQ 347
T + VQ G ++ + V L V + PK +
Sbjct: 244 DEPWGPWTGNGTFWLPRVQPFQEGTYLATIHLPYLQGQVTLELAVYK---PPKVSLMPAT 300
Query: 348 PNLATGNSDLRRIAC 362
A + C
Sbjct: 301 LARAAPGEAPPELLC 315
Score = 28.8 bits (63), Expect = 5.6
Identities = 14/90 (15%), Positives = 23/90 (25%), Gaps = 17/90 (18%)
Query: 122 DRSLQIENVGPQDEGLYICDVENLVGSISLRASLTVHLLRDDFRAEPKDT--------RV 173
+ + + V P EG Y+ + + L V PK +
Sbjct: 253 NGTFWLPRVQPFQEGTYLATIHLPYLQGQVTLELAV-------YKPPKVSLMPATLARAA 305
Query: 174 ASGETALLECGPPKGQPEP--TLHWKKNGQ 201
L C P + W+ G
Sbjct: 306 PGEAPPELLCLVSHFYPSGGLEVEWELRGG 335
>1ugn_A LIR1, leukocyte immunoglobulin-like receptor 1; immunoglobulin-like
folds, immune system; 1.80A {Homo sapiens} SCOP: b.1.1.4
b.1.1.4 PDB: 3d2u_D* 1g0x_A 1p7q_D 1ufu_A 1vdg_A 2gw5_A
2dyp_D 2otp_A 3q2c_A
Length = 198
Score = 28.7 bits (64), Expect = 4.3
Identities = 17/88 (19%), Positives = 27/88 (30%), Gaps = 8/88 (9%)
Query: 59 DQWKLIAKEALIKPFPISEPSDATVLSGSVVEFVCRVGGDPLPTILWRRDDGKMP--TGR 116
D +L+ A IKP +S V SG V C + ++
Sbjct: 89 DPLELVVTGAYIKPT-LSAQPSPVVNSGGNVTLQCD-SQVAFDGFILCKEGEDEHPQCLN 146
Query: 117 AKILDDRSLQ----IENVGPQDEGLYIC 140
++ S + + V P Y C
Sbjct: 147 SQPHARGSSRAIFSVGPVSPSRRWWYRC 174
>4ei6_B Vbeta16 XV19 type II natural killer T cell recept variable domain,
human constant...; natural killer T cell receptor,
immune system; 1.60A {Mus musculus} PDB: 4ei5_D 4elk_B
4elm_F* 2esv_E 3ffc_E 3utt_E 3utp_E* 3uts_E 3qjf_B
3qjh_B 3qiw_D* 3qiu_D
Length = 245
Score = 28.8 bits (64), Expect = 4.4
Identities = 16/89 (17%), Positives = 28/89 (31%), Gaps = 11/89 (12%)
Query: 124 SLQIENVGPQDEGLYICDVENLVGSISLRASLTVHLLRDDFRA----------EPKDTRV 173
+L+I+ +D +Y C L + EP + +
Sbjct: 77 TLKIQPTALEDSAVYFCASSFWGAYAEQFFGPGTRLTVLEDLKNVFPPEVAVFEPSEAEI 136
Query: 174 ASGETALLECGPPKGQPEP-TLHWKKNGQ 201
+ + A L C P+ L W NG+
Sbjct: 137 SHTQKATLVCLATGFYPDHVELSWWVNGK 165
>3khq_A B-cell antigen receptor complex-associated protei chain; CD79B,
CD79A, IG-beta, BCR, IG domain, V-SET, immunoglobulin
protein binding; HET: FLC GSH; 1.70A {Mus musculus} PDB:
3kho_A*
Length = 133
Score = 27.7 bits (62), Expect = 5.8
Identities = 10/28 (35%), Positives = 14/28 (50%)
Query: 299 TLRIQGVQKEDAGFFVCSALSVAGSTTV 326
TL IQ +Q ED G + C + + V
Sbjct: 78 TLTIQNIQYEDNGIYFCKQKCDSANHNV 105
>1lp9_E T-cell receptor alpha chain; immunoregulatory complex, class I
MHC:TCR CO-crystal, immune; 2.00A {Mus musculus} SCOP:
b.1.1.1 b.1.1.2 PDB: 2j8u_E 2jcc_E 2uwe_E 1nfd_A*
Length = 194
Score = 28.1 bits (62), Expect = 6.3
Identities = 14/84 (16%), Positives = 28/84 (33%), Gaps = 14/84 (16%)
Query: 260 LSCFAEGSPLPSVFW-TQEGSQVLMF--------PGNAYGHLHVTQEGT-----LRIQGV 305
L+C + + P +FW Q ++ + H T + L+
Sbjct: 21 LNCTYQSTYSPFLFWYVQHLNEAPKLLLKSFTDNKRPEHQGFHATLHKSSSSFHLQKSSA 80
Query: 306 QKEDAGFFVCSALSVAGSTTVRAF 329
Q D+ + C+ + S + F
Sbjct: 81 QLSDSALYYCALFLASSSFSKLVF 104
>2d3v_A Leukocyte immunoglobulin-like receptor subfamily A member 5 isoform
1; immunoglobulin-like fold, immune system; 1.85A {Homo
sapiens}
Length = 196
Score = 28.3 bits (63), Expect = 6.4
Identities = 11/75 (14%), Positives = 19/75 (25%), Gaps = 6/75 (8%)
Query: 248 SLLIWNHPRVNR-----LSCFAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRI 302
+L P V L C + T+EG L + ++ + +
Sbjct: 102 TLSALPSPVVTSGENVTLQCGSRLRF-DRFILTEEGDHKLSWTLDSQLTPSGQFQALFPV 160
Query: 303 QGVQKEDAGFFVCSA 317
V C
Sbjct: 161 GPVTPSHRWMLRCYG 175
Score = 27.9 bits (62), Expect = 7.4
Identities = 16/88 (18%), Positives = 26/88 (29%), Gaps = 8/88 (9%)
Query: 59 DQWKLIAKEALIKPFPISEPSDATVLSGSVVEFVCRVGGDPLPTILWRRDDGKMP--TGR 116
D +L+ KP + PS V SG V C + + T
Sbjct: 88 DPLELVVTGFYNKPTLSALPS-PVVTSGENVTLQCG-SRLRFDRFILTEEGDHKLSWTLD 145
Query: 117 AKILDDRSLQ----IENVGPQDEGLYIC 140
+++ Q + V P + C
Sbjct: 146 SQLTPSGQFQALFPVGPVTPSHRWMLRC 173
>3mwu_A Calmodulin-domain protein kinase 1; serine/threonine protein
kinase, transferase, calcium-bindin binding, bumped
kinase inhibitor, BKI; HET: BK3; 1.98A {Cryptosporidium
parvum} PDB: 3igo_A* 3ncg_A*
Length = 486
Score = 28.9 bits (65), Expect = 6.5
Identities = 13/42 (30%), Positives = 19/42 (45%), Gaps = 2/42 (4%)
Query: 32 SGDPGFDSRRSRSIFGSVLGARGALSDDQWKLIAKEA--LIK 71
SG P F + I V + A QW+ I+ +A LI+
Sbjct: 217 SGTPPFYGKNEYDILKRVETGKYAFDLPQWRTISDDAKDLIR 258
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 28.0 bits (61), Expect = 6.7
Identities = 9/37 (24%), Positives = 12/37 (32%), Gaps = 19/37 (51%)
Query: 387 ASLSVEPRPGPHAVHRMPDSGLFPGPPAAPVI-LNTT 422
ASL +A DS AP + + T
Sbjct: 27 ASLK------LYA----DDS--------APALAIKAT 45
>1b6u_A KIR2DL3, P58 killer cell inhibitory receptor; natural killer cell,
HLA, major histocompatibility complex class I (MHC class
I); 3.00A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4
Length = 257
Score = 28.4 bits (63), Expect = 6.8
Identities = 8/53 (15%), Positives = 16/53 (30%), Gaps = 5/53 (9%)
Query: 364 LRETDSGLYTCTASSESGETSWSAS-----LSVEPRPGPHAVHRMPDSGLFPG 411
+ + +G Y C S SA + + ++ P + G
Sbjct: 69 MMQDLAGTYRCYGSVTHSPYQLSAPSDPLDIVITGLYEKPSLSAQPGPTVLAG 121
Score = 28.4 bits (63), Expect = 6.9
Identities = 12/46 (26%), Positives = 13/46 (28%), Gaps = 6/46 (13%)
Query: 367 TDSGLYTCTASSESGETSWSAS-----LSV-EPRPGPHAVHRMPDS 406
T G Y C S WS S +SV P S
Sbjct: 170 THGGTYRCFGSFRDSPYEWSNSSDPLLVSVTGNPSNSWPSPTEPSS 215
>2eys_A NKT15; natural killer T cell receptor, immune system; 2.21A {Homo
sapiens} PDB: 2eyr_A 2eyt_A 3huj_E* 3tyf_A 3tzv_A*
3sdx_E* 2po6_C* 2cde_A 3to4_C*
Length = 210
Score = 28.1 bits (62), Expect = 7.3
Identities = 15/95 (15%), Positives = 28/95 (29%), Gaps = 14/95 (14%)
Query: 260 LSCFAEGSPLPSVFW-TQEGSQVLMFPGNAYGHLHVTQEG-------------TLRIQGV 305
L C SP ++ W Q+ + + + G +L I
Sbjct: 23 LQCNYTVSPFSNLRWYKQDTGRGPVSLTIMTFSENTKSNGRYTATLDADTKQSSLHITAS 82
Query: 306 QKEDAGFFVCSALSVAGSTTVRAFLQVREFCVLPK 340
Q D+ ++C + F + + V P
Sbjct: 83 QLSDSASYICVVSDRGSTLGRLYFGRGTQLTVWPD 117
>1nez_G T-cell surface glycoprotein CD8 alpha chain; immune system; HET:
NAG; 2.10A {Synthetic} SCOP: b.1.1.1 PDB: 1bqh_G*
3b9k_A* 2atp_A* 2arj_R
Length = 128
Score = 27.6 bits (61), Expect = 7.5
Identities = 7/21 (33%), Positives = 12/21 (57%)
Query: 299 TLRIQGVQKEDAGFFVCSALS 319
L + KE+ G++ CS +S
Sbjct: 86 VLTLNKFSKENEGYYFCSVIS 106
>3qib_D 2B4 beta chain; IG domain, immune system; HET: NAG FUC BMA; 2.70A
{Mus musculus}
Length = 270
Score = 28.1 bits (62), Expect = 7.8
Identities = 19/89 (21%), Positives = 31/89 (34%), Gaps = 11/89 (12%)
Query: 124 SLQIENVGPQDEGLYICDVENLVGSISLR----ASLTVHLLRDDFRA------EPKDTRV 173
SL+I++ D LY+C + L V + EP + +
Sbjct: 102 SLEIQSSEAGDSALYLCASSLNWSQDTQYFGPGTRLLVLEDLKNVFPPEVAVFEPSEAEI 161
Query: 174 ASGETALLECGPPKGQPEP-TLHWKKNGQ 201
+ + A L C P+ L W NG+
Sbjct: 162 SHTQKATLVCLATGFYPDHVELSWWVNGK 190
>3c6l_A TCR 2W20 alpha chain; TCR-PMHC complex; 3.40A {Mus musculus} SCOP:
b.1.1.1 b.1.1.2
Length = 185
Score = 27.9 bits (62), Expect = 8.2
Identities = 13/72 (18%), Positives = 22/72 (30%), Gaps = 14/72 (19%)
Query: 260 LSCFAEGSPLPSVFW-TQEGSQVLMFPGNAYGHLHVTQEG-------------TLRIQGV 305
L+C E S W Q + + ++G +L I
Sbjct: 20 LNCSYEDSTFDYFPWYHQFPGESPALLIAIRPVSNKKEDGRFTIFFNKREKKFSLHIADS 79
Query: 306 QKEDAGFFVCSA 317
Q D+ + C+A
Sbjct: 80 QPGDSATYFCAA 91
>1ypz_E T cell receptor delta, beta-2-microglobulin; H2-T22 protein, T cell
receptor delta, immune system; HET: NAG MAN FUC; 3.40A
{Mus musculus} SCOP: b.1.1.1 b.1.1.2
Length = 207
Score = 28.0 bits (62), Expect = 8.3
Identities = 21/118 (17%), Positives = 35/118 (29%), Gaps = 21/118 (17%)
Query: 101 PTILWRRDDGKMPTGRAKI-LDDRS-----LQIENVGPQDEGLYICDVENLVGSISLR-- 152
L+ G GR K D + L I + +D G Y C + S
Sbjct: 43 LISLFYLASGTKENGRLKSAFDSKERRYSTLHIRDAQLEDSGTYFCAADTWHISEGYELG 102
Query: 153 ---------ASLTVHLLRDDFRAEPKDTRVASGETALLECGPPKGQPEP-TLHWKKNG 200
+TV A+P + +G + C P+ T+ + +
Sbjct: 103 TDKLVFGQGTQVTVEPKSQPP-AKPSVFIMKNGTN--VACLVKDFYPKEVTISLRSSK 157
>3arx_A Chitinase A; TIM barrel, inhibitor complex, glycosidase, hydrolase,
hydro hydrolase inhibitor complex; HET: POY; 1.16A
{Vibrio harveyi} PDB: 3aro_A* 3arp_A* 3arr_A* 3arv_A*
3arw_A* 3arq_A* 3ary_A* 3arz_A* 3b8s_A 3b9e_A 3b9a_A*
3b9d_A 3as2_A* 3ars_A* 3art_A* 3as0_A* 3as1_A* 3aru_A*
3as3_A*
Length = 584
Score = 28.3 bits (63), Expect = 8.8
Identities = 14/61 (22%), Positives = 21/61 (34%), Gaps = 1/61 (1%)
Query: 455 LQTGWVVAAHRITSTSITVS-DLKPDTSYMFIVRAENSHGLGIPSPVSPITRTLGLNSLV 513
G VA IT + T S + Y + A ++ G +PV + L
Sbjct: 60 YFDGVKVATGAITGSQTTASFEYGQGGLYQMEIEACDATGCSKSAPVEITIADTDGSHLK 119
Query: 514 P 514
P
Sbjct: 120 P 120
>2nw2_A ELS4 TCR alpha chain; T cell receptor, immune system; 1.40A {Homo
sapiens} PDB: 2nx5_D 4dzb_A
Length = 200
Score = 28.0 bits (62), Expect = 8.9
Identities = 15/77 (19%), Positives = 31/77 (40%), Gaps = 13/77 (16%)
Query: 260 LSCFAEGSPLPSVFWTQ----EGSQVLMF--------PGNAYGHLHVTQ-EGTLRIQGVQ 306
++C + S +FW Q E L + G L ++ L ++ +Q
Sbjct: 19 INCTYQTSGFNGLFWYQQHAGEAPTFLSYNVLDGLEEKGRFSSFLSRSKGYSYLLLKELQ 78
Query: 307 KEDAGFFVCSALSVAGS 323
+D+ ++C+ + GS
Sbjct: 79 MKDSASYLCAVQASGGS 95
>3gsn_A RA14 TCR alpha chain (TRAV24, TRAJ49); HLA, human cytomegalovirus,
PP65, T cell receptor (TCR), immune response, public
response; 2.80A {Homo sapiens}
Length = 199
Score = 27.6 bits (61), Expect = 9.4
Identities = 12/72 (16%), Positives = 25/72 (34%), Gaps = 14/72 (19%)
Query: 260 LSCFAEGSPLPSVFW-TQEGSQVLMFPGNAYGHLHVTQEG-------------TLRIQGV 305
+C S ++ W E ++ + ++G L I+G
Sbjct: 20 FTCSFPSSNFYALHWYRWETAKSPEALFVMTLNGDEKKKGRISATLNTKEGYSYLYIKGS 79
Query: 306 QKEDAGFFVCSA 317
Q ED+ ++C+
Sbjct: 80 QPEDSATYLCAR 91
>1sq2_N Novel antigen receptor; immunoglobulin fold, protein-protein
complex, hydrolase/immune system complex; 1.45A
{Ginglymostoma cirratum} SCOP: b.1.1.1 PDB: 1t6v_N
Length = 113
Score = 27.0 bits (60), Expect = 9.7
Identities = 17/77 (22%), Positives = 28/77 (36%), Gaps = 14/77 (18%)
Query: 78 PSDATVLSGSVVEFVCRVGG--DPLPTILW-RRDDGKMPT------GRAKILDDR----- 123
P T +G + C + L + W R+ G+ GR +
Sbjct: 7 PRSVTKETGESLTINCVLRDASYALGSTCWYRKKSGEGNEESISKGGRYVETVNSGSKSF 66
Query: 124 SLQIENVGPQDEGLYIC 140
SL+I ++ +D G Y C
Sbjct: 67 SLRINDLTVEDGGTYRC 83
>3to4_D NKT vbeta2 (mouse variable domain, human constant; mouse CD1D,
mouse NKT, immune system; HET: AGH NAG; 3.10A {Homo
sapiens}
Length = 253
Score = 27.9 bits (62), Expect = 9.8
Identities = 16/93 (17%), Positives = 29/93 (31%), Gaps = 13/93 (13%)
Query: 122 DRSLQIENVGPQDEGLYICDVENLVGSISLRA------SLTVHLLRDDFRA------EPK 169
D L+++ C + + + LTV + EP
Sbjct: 73 DTELRLQVANMSQGRTLYCTSSADHWTNTGQLYFGEGSKLTVLEDLKNVFPPEVAVFEPS 132
Query: 170 DTRVASGETALLECGPPKGQPEP-TLHWKKNGQ 201
+ ++ + A L C P+ L W NG+
Sbjct: 133 EAEISHTQKATLVCLATGFYPDHVELSWWVNGK 165
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.318 0.134 0.410
Gapped
Lambda K H
0.267 0.0526 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 9,707,982
Number of extensions: 594633
Number of successful extensions: 4199
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2837
Number of HSP's successfully gapped: 1400
Length of query: 633
Length of database: 6,701,793
Length adjustment: 99
Effective length of query: 534
Effective length of database: 3,937,614
Effective search space: 2102685876
Effective search space used: 2102685876
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 60 (27.4 bits)