BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy15128
(292 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2VRA|A Chain A, Drosophila Robo Ig1-2 (Monoclinic Form)
pdb|2VRA|B Chain B, Drosophila Robo Ig1-2 (Monoclinic Form)
pdb|2VRA|C Chain C, Drosophila Robo Ig1-2 (Monoclinic Form)
pdb|2VRA|D Chain D, Drosophila Robo Ig1-2 (Monoclinic Form)
Length = 208
Score = 94.0 bits (232), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 61/179 (34%), Positives = 84/179 (46%), Gaps = 39/179 (21%)
Query: 143 PSNQTLPLHSVAFLPCQAVGSPPPHIRWYKNGNSLPPEDTRIN----------------- 185
P++ + + A L C+ G P P I W+K+G + + + +
Sbjct: 16 PTDLVVKKNEPATLNCKVEGKPEPTIEWFKDGEPVSTNEKKSHRVQFKDGALFFYRTMQG 75
Query: 186 --------------------VSSSGSLQIDVLRDDFRAEPKDTRVASGETALLECGPPKG 225
VS SLQI VLRDDFR EPKDTRVA GETALLECGPPKG
Sbjct: 76 KKEQDGGEYWCVAKNRVGQAVSRHASLQIAVLRDDFRVEPKDTRVAKGETALLECGPPKG 135
Query: 226 QPEPTLHWKKNGQFIDLESSKRVSILGDPWFDSRRSRSIFGSVLGALSDDQWKLIAKNI 284
PEPTL W K+G + L+ K +S ++ S + + + +K IA+N+
Sbjct: 136 IPEPTLIWIKDG--VPLDDLKAMSFGASSRVRIVDGGNLLISNVEPIDEGNYKCIAQNL 192
Score = 52.0 bits (123), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 46/176 (26%), Positives = 74/176 (42%), Gaps = 23/176 (13%)
Query: 34 HAPPSFVVRPQDQKVGLNGIASFQCVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQE 93
+ P + P D V N A+ C EG P P++ W ++G V H ++
Sbjct: 7 YQSPRIIEHPTDLVVKKNEPATLNCKVEGKPEPTIEWFKDGEPVST--NEKKSHRVQFKD 64
Query: 94 GTL----RIQGVQKEDAGFFVCSALSVAGSTTVR-AFLQVTSVEDTPPPIVQVGPSNQTL 148
G L +QG +++D G + C A + G R A LQ+ + D +V P + +
Sbjct: 65 GALFFYRTMQGKKEQDGGEYWCVAKNRVGQAVSRHASLQIAVLRDD----FRVEPKDTRV 120
Query: 149 PLHSVAFLPCQ-AVGSPPPHIRWYKNGNSLPPED---------TRINVSSSGSLQI 194
A L C G P P + W K+G +P +D +R+ + G+L I
Sbjct: 121 AKGETALLECGPPKGIPEPTLIWIKDG--VPLDDLKAMSFGASSRVRIVDGGNLLI 174
Score = 50.1 bits (118), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 35/131 (26%), Positives = 62/131 (47%), Gaps = 8/131 (6%)
Query: 6 KKSDEGKYQCYVQNMVGERETKPALLTVHA-PPSFVVRPQDQKVGLNGIASFQCV-AEGS 63
K+ D G+Y C +N VG+ ++ A L + F V P+D +V A +C +G
Sbjct: 77 KEQDGGEYWCVAKNRVGQAVSRHASLQIAVLRDDFRVEPKDTRVAKGETALLECGPPKGI 136
Query: 64 PLPSVFWTQEGSQVLMFPGNAYG---HLHVTQEGTLRIQGVQKEDAGFFVCSALSVAG-- 118
P P++ W ++G + ++G + + G L I V+ D G + C A ++ G
Sbjct: 137 PEPTLIWIKDGVPLDDLKAMSFGASSRVRIVDGGNLLISNVEPIDEGNYKCIAQNLVGTR 196
Query: 119 -STTVRAFLQV 128
S+ + +QV
Sbjct: 197 ESSYAKLIVQV 207
Score = 36.6 bits (83), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 16/34 (47%), Positives = 22/34 (64%)
Query: 1 MITEVKKSDEGKYQCYVQNMVGERETKPALLTVH 34
+I+ V+ DEG Y+C QN+VG RE+ A L V
Sbjct: 173 LISNVEPIDEGNYKCIAQNLVGTRESSYAKLIVQ 206
>pdb|2VR9|A Chain A, Drosophila Robo Ig1-2 (Tetragonal Form)
pdb|2VR9|B Chain B, Drosophila Robo Ig1-2 (Tetragonal Form)
pdb|2VR9|C Chain C, Drosophila Robo Ig1-2 (Tetragonal Form)
Length = 217
Score = 94.0 bits (232), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 61/179 (34%), Positives = 84/179 (46%), Gaps = 39/179 (21%)
Query: 143 PSNQTLPLHSVAFLPCQAVGSPPPHIRWYKNGNSLPPEDTRIN----------------- 185
P++ + + A L C+ G P P I W+K+G + + + +
Sbjct: 16 PTDLVVKKNEPATLNCKVEGKPEPTIEWFKDGEPVSTNEKKSHRVQFKDGALFFYRTMQG 75
Query: 186 --------------------VSSSGSLQIDVLRDDFRAEPKDTRVASGETALLECGPPKG 225
VS SLQI VLRDDFR EPKDTRVA GETALLECGPPKG
Sbjct: 76 KKEQDGGEYWCVAKNRVGQAVSRHASLQIAVLRDDFRVEPKDTRVAKGETALLECGPPKG 135
Query: 226 QPEPTLHWKKNGQFIDLESSKRVSILGDPWFDSRRSRSIFGSVLGALSDDQWKLIAKNI 284
PEPTL W K+G + L+ K +S ++ S + + + +K IA+N+
Sbjct: 136 IPEPTLIWIKDG--VPLDDLKAMSFGASSRVRIVDGGNLLISNVEPIDEGNYKCIAQNL 192
Score = 52.0 bits (123), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 46/176 (26%), Positives = 74/176 (42%), Gaps = 23/176 (13%)
Query: 34 HAPPSFVVRPQDQKVGLNGIASFQCVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQE 93
+ P + P D V N A+ C EG P P++ W ++G V H ++
Sbjct: 7 YQSPRIIEHPTDLVVKKNEPATLNCKVEGKPEPTIEWFKDGEPVST--NEKKSHRVQFKD 64
Query: 94 GTL----RIQGVQKEDAGFFVCSALSVAGSTTVR-AFLQVTSVEDTPPPIVQVGPSNQTL 148
G L +QG +++D G + C A + G R A LQ+ + D +V P + +
Sbjct: 65 GALFFYRTMQGKKEQDGGEYWCVAKNRVGQAVSRHASLQIAVLRDD----FRVEPKDTRV 120
Query: 149 PLHSVAFLPCQ-AVGSPPPHIRWYKNGNSLPPED---------TRINVSSSGSLQI 194
A L C G P P + W K+G +P +D +R+ + G+L I
Sbjct: 121 AKGETALLECGPPKGIPEPTLIWIKDG--VPLDDLKAMSFGASSRVRIVDGGNLLI 174
Score = 50.1 bits (118), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 35/131 (26%), Positives = 62/131 (47%), Gaps = 8/131 (6%)
Query: 6 KKSDEGKYQCYVQNMVGERETKPALLTVHA-PPSFVVRPQDQKVGLNGIASFQCV-AEGS 63
K+ D G+Y C +N VG+ ++ A L + F V P+D +V A +C +G
Sbjct: 77 KEQDGGEYWCVAKNRVGQAVSRHASLQIAVLRDDFRVEPKDTRVAKGETALLECGPPKGI 136
Query: 64 PLPSVFWTQEGSQVLMFPGNAYG---HLHVTQEGTLRIQGVQKEDAGFFVCSALSVAG-- 118
P P++ W ++G + ++G + + G L I V+ D G + C A ++ G
Sbjct: 137 PEPTLIWIKDGVPLDDLKAMSFGASSRVRIVDGGNLLISNVEPIDEGNYKCIAQNLVGTR 196
Query: 119 -STTVRAFLQV 128
S+ + +QV
Sbjct: 197 ESSYAKLIVQV 207
Score = 36.6 bits (83), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 16/34 (47%), Positives = 22/34 (64%)
Query: 1 MITEVKKSDEGKYQCYVQNMVGERETKPALLTVH 34
+I+ V+ DEG Y+C QN+VG RE+ A L V
Sbjct: 173 LISNVEPIDEGNYKCIAQNLVGTRESSYAKLIVQ 206
>pdb|2V9Q|A Chain A, First And Second Ig Domains From Human Robo1
pdb|2V9R|A Chain A, First And Second Ig Domains From Human Robo1 (Form 2)
Length = 212
Score = 87.4 bits (215), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 57/161 (35%), Positives = 75/161 (46%), Gaps = 42/161 (26%)
Query: 132 EDTPPPIVQVGPSNQTLPLHSVAFLPCQAVGSPPPHIRWYKNG----------------- 174
ED PP IV+ PS+ + A L C+A G P P I WYK G
Sbjct: 6 EDFPPRIVE-HPSDLIVSKGEPATLNCKAEGRPTPTIEWYKGGERVETDKDDPRSHRMLL 64
Query: 175 --------------NSLPPEDTRI---------NVSSSGSLQIDVLRDDFRAEPKDTRVA 211
S P E + VS SL++ +LRDDFR P D VA
Sbjct: 65 PSGSLFFLRIVHGRKSRPDEGVYVCVARNYLGEAVSHDASLEVAILRDDFRQNPSDVMVA 124
Query: 212 SGETALLECGPPKGQPEPTLHWKKNGQFIDLESSKRVSILG 252
GE A++EC PP+G PEPT+ WKK+G +D + +R++I G
Sbjct: 125 VGEPAVMECQPPRGHPEPTISWKKDGSPLD-DKDERITIRG 164
Score = 63.9 bits (154), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 52/170 (30%), Positives = 76/170 (44%), Gaps = 12/170 (7%)
Query: 36 PPSFVVRPQDQKVGLNGIASFQCVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGT 95
PP V P D V A+ C AEG P P++ W + G +V + H + G+
Sbjct: 9 PPRIVEHPSDLIVSKGEPATLNCKAEGRPTPTIEWYKGGERVETDKDDPRSHRMLLPSGS 68
Query: 96 ---LRIQGVQKE--DAGFFVCSALSVAG-STTVRAFLQVTSVEDTPPPIVQVGPSNQTLP 149
LRI +K D G +VC A + G + + A L+V + D + PS+ +
Sbjct: 69 LFFLRIVHGRKSRPDEGVYVCVARNYLGEAVSHDASLEVAILRDD----FRQNPSDVMVA 124
Query: 150 LHSVAFLPCQ-AVGSPPPHIRWYKNGNSLPPEDTRINVSSSGSLQIDVLR 198
+ A + CQ G P P I W K+G+ L +D RI + G L I R
Sbjct: 125 VGEPAVMECQPPRGHPEPTISWKKDGSPLDDKDERITI-RGGKLMITYTR 173
Score = 49.3 bits (116), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 25/40 (62%), Positives = 28/40 (70%)
Query: 1 MITEVKKSDEGKYQCYVQNMVGERETKPALLTVHAPPSFV 40
MIT +KSD GKY C NMVGERE++ A LTV PSFV
Sbjct: 168 MITYTRKSDAGKYVCVGTNMVGERESEVAELTVLERPSFV 207
Score = 46.6 bits (109), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 34/114 (29%), Positives = 50/114 (43%), Gaps = 7/114 (6%)
Query: 7 KSDEGKYQCYVQNMVGERETKPALLTVHA-PPSFVVRPQDQKVGLNGIASFQCV-AEGSP 64
+ DEG Y C +N +GE + A L V F P D V + A +C G P
Sbjct: 81 RPDEGVYVCVARNYLGEAVSHDASLEVAILRDDFRQNPSDVMVAVGEPAVMECQPPRGHP 140
Query: 65 LPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAG 118
P++ W ++GS P + + G L I +K DAG +VC ++ G
Sbjct: 141 EPTISWKKDGS-----PLDDKDERITIRGGKLMITYTRKSDAGKYVCVGTNMVG 189
Score = 32.7 bits (73), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
Query: 190 GSLQIDVLRDDFRAEPKDTRVASGETALLECGPPKGQPEPTLHWKKNGQFIDLE 243
GSL+ + P D V+ GE A L C +G+P PT+ W K G+ ++ +
Sbjct: 1 GSLRQEDFPPRIVEHPSDLIVSKGEPATLNCKA-EGRPTPTIEWYKGGERVETD 53
>pdb|3DMK|A Chain A, Crystal Structure Of Down Syndrome Cell Adhesion Molecule
(Dscam) Isoform 1.30.30, N-Terminal Eight Ig Domains
pdb|3DMK|B Chain B, Crystal Structure Of Down Syndrome Cell Adhesion Molecule
(Dscam) Isoform 1.30.30, N-Terminal Eight Ig Domains
pdb|3DMK|C Chain C, Crystal Structure Of Down Syndrome Cell Adhesion Molecule
(Dscam) Isoform 1.30.30, N-Terminal Eight Ig Domains
Length = 816
Score = 87.0 bits (214), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 72/283 (25%), Positives = 120/283 (42%), Gaps = 51/283 (18%)
Query: 1 MITEVKKSDEGKYQCYVQNMVGERETKPALLTVHAPPSFVVRPQDQKVGLNGIASFQCVA 60
+I + D GKY C V N VG E+ +LTV AP S + P Q V A F C
Sbjct: 309 IIKDAVVEDSGKYLCVVNNSVG-GESVETVLTVTAPLSAKIDPPTQTVDFGRPAVFTCQY 367
Query: 61 EGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGST 120
G+P+ +V W ++ G A GH E LRI+ V+KED G + C + S
Sbjct: 368 TGNPIKTVSWMKD--------GKAIGH----SESVLRIESVKKEDKGMYQCFVRNDRESA 415
Query: 121 TVRAFLQVTSVEDTPPPIVQVGPSNQTLPLHSVAFLPCQAVGSPPPHIRWYKNGNSLPPE 180
A L++ D PP+++ +T+ FL C A G+P P I W +G +
Sbjct: 416 EASAELKLGGRFD--PPVIRQAFQEETMEPGPSVFLKCVAGGNPTPEISWELDGKKIANN 473
Query: 181 D---------------TRINVSS--------------------SGSLQIDVLRDDFRAEP 205
D + +N++S S +++V + +
Sbjct: 474 DRYQVGQYVTVNGDVVSYLNITSVHANDGGLYKCIAKSKVGVAEHSAKLNVYGLPYIRQM 533
Query: 206 KDTRVASGETALLECGPPKGQPEPTLHWKKNGQFIDLESSKRV 248
+ + +GET ++ C P G P ++ W+++ + + + ++V
Sbjct: 534 EKKAIVAGETLIVTC-PVAGYPIDSIVWERDNRALPINRKQKV 575
Score = 63.9 bits (154), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 38/124 (30%), Positives = 63/124 (50%), Gaps = 12/124 (9%)
Query: 2 ITEVKKSDEGKYQCYVQNMVGERE-TKPALLTVHAPPSFVVRPQDQKVGLNGIASFQCVA 60
I V+ S G + C+ +N+ G ++ T P L V+ PP +++ P D+ A +C A
Sbjct: 681 IEAVEASHAGNFTCHARNLAGHQQFTTP--LNVYVPPRWILEPTDKAFAQGSDAKVECKA 738
Query: 61 EGSPLPSVFWTQEGSQVLMFPGNAYGHLHVT-----QEGTLRIQGVQKEDAGFFVCSALS 115
+G P P V W + PG Y L + +EGTL + +QK + G+++C A++
Sbjct: 739 DGFPKPQVTWKKAVGDT---PGE-YKDLKKSDNIRVEEGTLHVDNIQKTNEGYYLCEAIN 794
Query: 116 VAGS 119
GS
Sbjct: 795 GIGS 798
Score = 52.4 bits (124), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 52/216 (24%), Positives = 88/216 (40%), Gaps = 42/216 (19%)
Query: 55 SFQCVAEGSPLPSVFWTQ--EGS---QVLMFPGNAYGHLHVTQ-EGTLRIQGVQKEDAGF 108
+ C A+G P+P W + EG+ Q ++ + V Q GTL I+ ED+G
Sbjct: 267 ALLCPAQGYPVPVFRWYKFIEGTTRKQAVVL------NDRVKQVSGTLIIKDAVVEDSGK 320
Query: 109 FVCSALSVAGSTTVRAFLQVTSVEDTPPPIVQVGPSNQTLPLHSVAFLPCQAVGSPPPHI 168
++C + G +V L VT+ P ++ P QT+ A CQ G+P +
Sbjct: 321 YLCVVNNSVGGESVETVLTVTA-----PLSAKIDPPTQTVDFGRPAVFTCQYTGNPIKTV 375
Query: 169 RWYKNGNSLPPEDTRINVSS-----SGSLQIDVLRDDFRAEP------------------ 205
W K+G ++ ++ + + S G Q V D AE
Sbjct: 376 SWMKDGKAIGHSESVLRIESVKKEDKGMYQCFVRNDRESAEASAELKLGGRFDPPVIRQA 435
Query: 206 -KDTRVASGETALLECGPPKGQPEPTLHWKKNGQFI 240
++ + G + L+C G P P + W+ +G+ I
Sbjct: 436 FQEETMEPGPSVFLKC-VAGGNPTPEISWELDGKKI 470
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 48/198 (24%), Positives = 78/198 (39%), Gaps = 15/198 (7%)
Query: 6 KKSDEGKYQCYVQNMVGERETKPALLTVHAPPSFV-VRPQDQKVGLNGIASFQCVAEGSP 64
+ SD+ Y C +N G + V P + ++ + + C G
Sbjct: 588 RNSDQATYTCVAKNQEGYSARGSLEVQVMVLPRIIPFAFEEGPAQVGQYLTLHCSVPGGD 647
Query: 65 LP-SVFWTQEGSQVLMFPGNAYGHLHVTQEGT-LRIQGVQKEDAGFFVCSALSVAGSTTV 122
LP ++ WT +G + G V + G+ L I+ V+ AG F C A ++AG
Sbjct: 648 LPLNIDWTLDGQAISEDLGITTSR--VGRRGSVLTIEAVEASHAGNFTCHARNLAGHQQF 705
Query: 123 RAFLQVTSVEDTPPPIVQVGPSNQTLPLHSVAFLPCQAVGSPPPHIRWYKNGNSLPPEDT 182
L V PP + P+++ S A + C+A G P P + W K P E
Sbjct: 706 TTPLNVYV-----PPRWILEPTDKAFAQGSDAKVECKADGFPKPQVTWKKAVGDTPGEYK 760
Query: 183 RINVSSS-----GSLQID 195
+ S + G+L +D
Sbjct: 761 DLKKSDNIRVEEGTLHVD 778
Score = 32.0 bits (71), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 30/106 (28%), Positives = 43/106 (40%), Gaps = 18/106 (16%)
Query: 108 FFVCSALSVAGSTTVRAFLQVTSVEDTPPPIVQVGPSNQTLPLHSVAF-------LPCQA 160
F AL GS T+ A PP Q GP P + + F + C+A
Sbjct: 13 LFAAVALIACGSQTLAA---------NPPDADQKGPVFLKEPTNRIDFSNSTGAEIECKA 63
Query: 161 VGSPPPHIRWYK-NGNSLPPEDTRINVSSSGSLQIDVLR-DDFRAE 204
G+P P I W + +G ++ +SS G L R +D+R E
Sbjct: 64 SGNPMPEIIWIRSDGTAVGDVPGLRQISSDGKLVFPPFRAEDYRQE 109
Score = 30.0 bits (66), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 33/102 (32%), Positives = 45/102 (44%), Gaps = 10/102 (9%)
Query: 80 FPGNAY-GHLHVTQEGTLRIQGVQKEDAGF--FVC-SALSVAGSTTVRAF---LQVTS-V 131
FPG Y G V G L I+ V ED G+ + C + + G T + A L +T +
Sbjct: 184 FPGAEYDGKYLVLPSGELHIREVGPED-GYKSYQCRTKHRLTGETRLSATKGRLVITEPI 242
Query: 132 EDTPPPIVQVGPSN-QTLPLHSVAFLPCQAVGSPPPHIRWYK 172
P +V + + +T S L C A G P P RWYK
Sbjct: 243 SSAVPKVVSLAKFDMKTYSGSSTMALLCPAQGYPVPVFRWYK 284
Score = 30.0 bits (66), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 35/77 (45%), Gaps = 11/77 (14%)
Query: 54 ASFQCVAEGSPLPSVFWTQ-EGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKED------A 106
A +C A G+P+P + W + +G+ V G+ G ++ +G L + ED A
Sbjct: 57 AEIECKASGNPMPEIIWIRSDGTAV----GDVPGLRQISSDGKLVFPPFRAEDYRQEVHA 112
Query: 107 GFFVCSALSVAGSTTVR 123
+ C A + GS R
Sbjct: 113 QVYACLARNQFGSIISR 129
>pdb|2YD1|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of
Drosophila Receptor Protein Tyrosine Phosphatase Dlar
Length = 212
Score = 83.2 bits (204), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 51/172 (29%), Positives = 88/172 (51%), Gaps = 11/172 (6%)
Query: 36 PPSFVVRPQDQKVGLNGIASFQCVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEG- 94
PP + +PQ+Q V + G+ASF C A G P PS+ W + G +V G + + Q G
Sbjct: 6 PPEIIRKPQNQGVRVGGVASFYCAARGDPPPSIVWRKNGKKV---SGTQSRYTVLEQPGG 62
Query: 95 --TLRIQGVQ--KEDAGFFVCSALSVAGSTTVRAFLQVTSVEDTPP--PIVQVGPSNQTL 148
LRI+ V+ ++DA + + V + + A L + + TP P++ GP + +
Sbjct: 63 ISILRIEPVRAGRDDAPYECVAENGVGDAVSADATLTIYEGDKTPAGFPVITQGPGTRVI 122
Query: 149 PLHSVAFLPCQAVGSPPPHIRWYKNGNSLPPEDTRINVSSSGSLQIDVLRDD 200
+ + C+A+G+P P+I W KN + + R ++ G LQI+ R++
Sbjct: 123 EVGHTVLMTCKAIGNPTPNIYWIKNQTKVDMSNPRYSL-KDGFLQIENSREE 173
Score = 46.6 bits (109), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/123 (25%), Positives = 59/123 (47%), Gaps = 12/123 (9%)
Query: 9 DEGKYQCYVQNMVGERETKPALLTVH----APPSFVV---RPQDQKVGLNGIASFQCVAE 61
D+ Y+C +N VG+ + A LT++ P F V P + + + C A
Sbjct: 76 DDAPYECVAENGVGDAVSADATLTIYEGDKTPAGFPVITQGPGTRVIEVGHTVLMTCKAI 135
Query: 62 GSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTT 121
G+P P+++W + ++V M + ++G L+I+ ++ED G + C A + G+
Sbjct: 136 GNPTPNIYWIKNQTKVDMS-----NPRYSLKDGFLQIENSREEDQGKYECVAENSMGTEH 190
Query: 122 VRA 124
+A
Sbjct: 191 SKA 193
Score = 28.1 bits (61), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 27/51 (52%), Gaps = 2/51 (3%)
Query: 204 EPKDTRVASGETALLECGPPKGQPEPTLHWKKNGQFIDLESSKRVSILGDP 254
+P++ V G A C +G P P++ W+KNG+ + S R ++L P
Sbjct: 12 KPQNQGVRVGGVASFYCAA-RGDPPPSIVWRKNGKKVSGTQS-RYTVLEQP 60
Score = 27.7 bits (60), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 11/32 (34%), Positives = 18/32 (56%)
Query: 2 ITEVKKSDEGKYQCYVQNMVGERETKPALLTV 33
I ++ D+GKY+C +N +G +K L V
Sbjct: 167 IENSREEDQGKYECVAENSMGTEHSKATNLYV 198
>pdb|3PXJ|A Chain A, Tandem Ig Repeats Of Dlar
pdb|3PXJ|B Chain B, Tandem Ig Repeats Of Dlar
pdb|3PXJ|C Chain C, Tandem Ig Repeats Of Dlar
pdb|3PXJ|D Chain D, Tandem Ig Repeats Of Dlar
Length = 210
Score = 82.4 bits (202), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 51/172 (29%), Positives = 88/172 (51%), Gaps = 11/172 (6%)
Query: 36 PPSFVVRPQDQKVGLNGIASFQCVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEG- 94
PP + +PQ+Q V + G+ASF C A G P PS+ W + G +V G + + Q G
Sbjct: 8 PPEIIRKPQNQGVRVGGVASFYCAARGDPPPSIVWRKNGKKV---SGTQSRYTVLEQPGG 64
Query: 95 --TLRIQGVQ--KEDAGFFVCSALSVAGSTTVRAFLQVTSVEDTPP--PIVQVGPSNQTL 148
LRI+ V+ ++DA + + V + + A L + + TP P++ GP + +
Sbjct: 65 ISILRIEPVRAGRDDAPYECVAENGVGDAVSADATLTIYEGDKTPAGFPVITQGPGTRVI 124
Query: 149 PLHSVAFLPCQAVGSPPPHIRWYKNGNSLPPEDTRINVSSSGSLQIDVLRDD 200
+ + C+A+G+P P+I W KN + + R ++ G LQI+ R++
Sbjct: 125 EVGHTVLMTCKAIGNPTPNIYWIKNQTKVDMSNPRYSL-KDGFLQIENSREE 175
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 34/135 (25%), Positives = 62/135 (45%), Gaps = 12/135 (8%)
Query: 9 DEGKYQCYVQNMVGERETKPALLTVH----APPSFVV---RPQDQKVGLNGIASFQCVAE 61
D+ Y+C +N VG+ + A LT++ P F V P + + + C A
Sbjct: 78 DDAPYECVAENGVGDAVSADATLTIYEGDKTPAGFPVITQGPGTRVIEVGHTVLMTCKAI 137
Query: 62 GSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTT 121
G+P P+++W + ++V M + ++G L+I+ ++ED G + C A + G+
Sbjct: 138 GNPTPNIYWIKNQTKVDMS-----NPRYSLKDGFLQIENSREEDQGKYECVAENSMGTEH 192
Query: 122 VRAFLQVTSVEDTPP 136
+A V PP
Sbjct: 193 SKATNLYVKVRRVPP 207
Score = 30.4 bits (67), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 22/41 (53%), Gaps = 3/41 (7%)
Query: 2 ITEVKKSDEGKYQCYVQNMVGERETKPALLTV---HAPPSF 39
I ++ D+GKY+C +N +G +K L V PP+F
Sbjct: 169 IENSREEDQGKYECVAENSMGTEHSKATNLYVKVRRVPPTF 209
Score = 28.5 bits (62), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 27/51 (52%), Gaps = 2/51 (3%)
Query: 204 EPKDTRVASGETALLECGPPKGQPEPTLHWKKNGQFIDLESSKRVSILGDP 254
+P++ V G A C +G P P++ W+KNG+ + S R ++L P
Sbjct: 14 KPQNQGVRVGGVASFYCAA-RGDPPPSIVWRKNGKKVSGTQS-RYTVLEQP 62
>pdb|2YD4|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of
Chicken Receptor Protein Tyrosine Phosphatase Sigma
Length = 210
Score = 76.3 bits (186), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 55/171 (32%), Positives = 81/171 (47%), Gaps = 10/171 (5%)
Query: 32 TVHAPPSFVVRPQDQKVGLNGIASFQCVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVT 91
T +PP F+ +P DQ G+ASF C A G P P V W ++G +V + +
Sbjct: 2 TGESPPVFIKKPVDQIGVSGGVASFVCQATGDPKPRVTWNKKGKKV---NSQRFETIEFD 58
Query: 92 QEG--TLRIQGVQK-EDAGFFVCSALSVAGSTTVRAFLQVTSVEDTPP--PIVQVGPSNQ 146
+ LRIQ ++ D + C A + G TV A L V + PP P + +GP +
Sbjct: 59 ESAGAVLRIQPLRTPRDENIYECVAQNPHGEVTVHAKLTVLREDQLPPGFPNIDMGPQLK 118
Query: 147 TLPLHSVAFLPCQAVGSPPPHIRWYKNGNSLPPEDT--RINVSSSGSLQID 195
+ A + C A G+P P I W+K+ + P + RI SG LQI+
Sbjct: 119 VVERTRTATMLCAASGNPDPEITWFKDFLPVDPSTSNGRIKQLRSGGLQIE 169
Score = 47.0 bits (110), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 38/117 (32%), Positives = 55/117 (47%), Gaps = 10/117 (8%)
Query: 9 DEGKYQCYVQNMVGERETKPALLTV----HAPPSFV---VRPQDQKVGLNGIASFQCVAE 61
DE Y+C QN GE T A LTV PP F + PQ + V A+ C A
Sbjct: 75 DENIYECVAQNPHGEV-TVHAKLTVLREDQLPPGFPNIDMGPQLKVVERTRTATMLCAAS 133
Query: 62 GSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAG 118
G+P P + W ++ V P + G + + G L+I+ ++ D G + C A + AG
Sbjct: 134 GNPDPEITWFKDFLPV--DPSTSNGRIKQLRSGGLQIESSEETDQGKYECVASNSAG 188
Score = 30.4 bits (67), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 19/33 (57%)
Query: 2 ITEVKKSDEGKYQCYVQNMVGERETKPALLTVH 34
I +++D+GKY+C N G R + PA L V
Sbjct: 168 IESSEETDQGKYECVASNSAGVRYSSPANLYVR 200
>pdb|2YD5|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human
Receptor Protein Tyrosine Phosphatase Lar
pdb|2YD8|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human
Receptor Protein Tyrosine Phosphatase Lar In Complex
With Sucrose Octasulphate
Length = 214
Score = 75.5 bits (184), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 54/175 (30%), Positives = 80/175 (45%), Gaps = 18/175 (10%)
Query: 32 TVHAPPSFVVRPQDQKVGLNGIASFQCVAEGSPLPSVFWTQEGS-------QVLMFPGNA 84
T + P F+ P+DQ G+ASF C A G P P + W ++G +V+ F A
Sbjct: 2 TGDSKPVFIKVPEDQTGLSGGVASFVCQATGEPKPRITWMKKGKKVSSQRFEVIEFDDGA 61
Query: 85 YGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVTSVEDTPP--PIVQVG 142
L + LR+Q D + C+A + G A L V E PP P + +G
Sbjct: 62 GSVLRIQ---PLRVQ----RDEAIYECTATNSLGEINTSAKLSVLEEEQLPPGFPSIDMG 114
Query: 143 PSNQTLPLHSVAFLPCQAVGSPPPHIRWYKNGNSLPP--EDTRINVSSSGSLQID 195
P + + A + C A G+P P I W+K+ + P + RI SG+LQI+
Sbjct: 115 PQLKVVEKARTATMLCAAGGNPDPEISWFKDFLPVDPATSNGRIKQLRSGALQIE 169
Score = 48.9 bits (115), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 33/117 (28%), Positives = 53/117 (45%), Gaps = 8/117 (6%)
Query: 9 DEGKYQCYVQNMVGERETKPALLTVHAP------PSFVVRPQDQKVGLNGIASFQCVAEG 62
DE Y+C N +GE T L + PS + PQ + V A+ C A G
Sbjct: 75 DEAIYECTATNSLGEINTSAKLSVLEEEQLPPGFPSIDMGPQLKVVEKARTATMLCAAGG 134
Query: 63 SPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGS 119
+P P + W ++ V P + G + + G L+I+ ++ D G + C A + AG+
Sbjct: 135 NPDPEISWFKDFLPV--DPATSNGRIKQLRSGALQIESSEESDQGKYECVATNSAGT 189
Score = 32.0 bits (71), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 19/33 (57%)
Query: 2 ITEVKKSDEGKYQCYVQNMVGERETKPALLTVH 34
I ++SD+GKY+C N G R + PA L V
Sbjct: 168 IESSEESDQGKYECVATNSAGTRYSAPANLYVR 200
>pdb|2YD2|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human
Receptor Protein Tyrosine Phosphatase Sigma
Length = 214
Score = 75.5 bits (184), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 54/171 (31%), Positives = 80/171 (46%), Gaps = 10/171 (5%)
Query: 32 TVHAPPSFVVRPQDQKVGLNGIASFQCVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVT 91
T PP F+ P+DQ G+ASF C A G P P V W ++G +V + +
Sbjct: 2 TGEEPPRFIKEPKDQIGVSGGVASFVCQATGDPKPRVTWNKKGKKV---NSQRFETIEFD 58
Query: 92 QE--GTLRIQGVQK-EDAGFFVCSALSVAGSTTVRAFLQVTSVEDTPP--PIVQVGPSNQ 146
+ LRIQ ++ D + C A + G TV A L V + P P + +GP +
Sbjct: 59 ESAGAVLRIQPLRTPRDENVYECVAQNSVGEITVHAKLTVLREDQLPSGFPNIDMGPQLK 118
Query: 147 TLPLHSVAFLPCQAVGSPPPHIRWYKNGNSLPP--EDTRINVSSSGSLQID 195
+ A + C A G+P P I W+K+ + P + RI SG+LQI+
Sbjct: 119 VVERTRTATMLCAASGNPDPEITWFKDFLPVDPSASNGRIKQLRSGALQIE 169
Score = 50.8 bits (120), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 39/142 (27%), Positives = 64/142 (45%), Gaps = 25/142 (17%)
Query: 9 DEGKYQCYVQNMVGERETKPALLTVHAP-------------PSFVVRPQDQKVGLNGIAS 55
DE Y+C QN VGE +TVHA P+ + PQ + V A+
Sbjct: 75 DENVYECVAQNSVGE-------ITVHAKLTVLREDQLPSGFPNIDMGPQLKVVERTRTAT 127
Query: 56 FQCVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALS 115
C A G+P P + W ++ + + P + G + + G L+I+ ++ D G + C A +
Sbjct: 128 MLCAASGNPDPEITWFKDF--LPVDPSASNGRIKQLRSGALQIESSEETDQGKYECVATN 185
Query: 116 VAG---STTVRAFLQVTSVEDT 134
AG S+ +++V V T
Sbjct: 186 SAGVRYSSPANLYVRVRRVAGT 207
Score = 30.0 bits (66), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 19/33 (57%)
Query: 2 ITEVKKSDEGKYQCYVQNMVGERETKPALLTVH 34
I +++D+GKY+C N G R + PA L V
Sbjct: 168 IESSEETDQGKYECVATNSAGVRYSSPANLYVR 200
Score = 27.7 bits (60), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
Query: 201 FRAEPKDTRVASGETALLECGPPKGQPEPTLHWKKNGQFID 241
F EPKD SG A C G P+P + W K G+ ++
Sbjct: 9 FIKEPKDQIGVSGGVASFVC-QATGDPKPRVTWNKKGKKVN 48
>pdb|2YD3|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human
Receptor Protein Tyrosine Phosphatase Sigma
Length = 202
Score = 75.5 bits (184), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 54/171 (31%), Positives = 80/171 (46%), Gaps = 10/171 (5%)
Query: 32 TVHAPPSFVVRPQDQKVGLNGIASFQCVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVT 91
T PP F+ P+DQ G+ASF C A G P P V W ++G +V + +
Sbjct: 2 TGEEPPRFIKEPKDQIGVSGGVASFVCQATGDPKPRVTWNKKGKKV---NSQRFETIEFD 58
Query: 92 QE--GTLRIQGVQK-EDAGFFVCSALSVAGSTTVRAFLQVTSVEDTPP--PIVQVGPSNQ 146
+ LRIQ ++ D + C A + G TV A L V + P P + +GP +
Sbjct: 59 ESAGAVLRIQPLRTPRDENVYECVAQNSVGEITVHAKLTVLREDQLPSGFPNIDMGPQLK 118
Query: 147 TLPLHSVAFLPCQAVGSPPPHIRWYKNGNSLPP--EDTRINVSSSGSLQID 195
+ A + C A G+P P I W+K+ + P + RI SG+LQI+
Sbjct: 119 VVERTRTATMLCAASGNPDPEITWFKDFLPVDPSASNGRIKQLRSGALQIE 169
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 36/123 (29%), Positives = 55/123 (44%), Gaps = 22/123 (17%)
Query: 9 DEGKYQCYVQNMVGERETKPALLTVHAP-------------PSFVVRPQDQKVGLNGIAS 55
DE Y+C QN VGE +TVHA P+ + PQ + V A+
Sbjct: 75 DENVYECVAQNSVGE-------ITVHAKLTVLREDQLPSGFPNIDMGPQLKVVERTRTAT 127
Query: 56 FQCVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALS 115
C A G+P P + W ++ V P + G + + G L+I+ ++ D G + C A +
Sbjct: 128 MLCAASGNPDPEITWFKDFLPV--DPSASNGRIKQLRSGALQIESSEETDQGKYECVATN 185
Query: 116 VAG 118
AG
Sbjct: 186 SAG 188
Score = 30.0 bits (66), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 19/33 (57%)
Query: 2 ITEVKKSDEGKYQCYVQNMVGERETKPALLTVH 34
I +++D+GKY+C N G R + PA L V
Sbjct: 168 IESSEETDQGKYECVATNSAGVRYSSPANLYVR 200
Score = 27.3 bits (59), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
Query: 201 FRAEPKDTRVASGETALLECGPPKGQPEPTLHWKKNGQFID 241
F EPKD SG A C G P+P + W K G+ ++
Sbjct: 9 FIKEPKDQIGVSGGVASFVCQA-TGDPKPRVTWNKKGKKVN 48
>pdb|2YD9|A Chain A, Crystal Structure Of The N-Terminal Ig1-3 Module Of Human
Receptor Protein Tyrosine Phosphatase Sigma
Length = 304
Score = 74.3 bits (181), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 54/171 (31%), Positives = 80/171 (46%), Gaps = 10/171 (5%)
Query: 32 TVHAPPSFVVRPQDQKVGLNGIASFQCVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVT 91
T PP F+ P+DQ G+ASF C A G P P V W ++G +V + +
Sbjct: 2 TGEEPPRFIKEPKDQIGVSGGVASFVCQATGDPKPRVTWNKKGKKV---NSQRFETIEFD 58
Query: 92 QE--GTLRIQGVQK-EDAGFFVCSALSVAGSTTVRAFLQVTSVEDTPP--PIVQVGPSNQ 146
+ LRIQ ++ D + C A + G TV A L V + P P + +GP +
Sbjct: 59 ESAGAVLRIQPLRTPRDENVYECVAQNSVGEITVHAKLTVLREDQLPSGFPNIDMGPQLK 118
Query: 147 TLPLHSVAFLPCQAVGSPPPHIRWYKNGNSLPP--EDTRINVSSSGSLQID 195
+ A + C A G+P P I W+K+ + P + RI SG+LQI+
Sbjct: 119 VVERTRTATMLCAASGNPDPEITWFKDFLPVDPSASNGRIKQLRSGALQIE 169
Score = 72.4 bits (176), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 53/186 (28%), Positives = 84/186 (45%), Gaps = 23/186 (12%)
Query: 9 DEGKYQCYVQNMVGERETKPALLTVHAP-------------PSFVVRPQDQKVGLNGIAS 55
DE Y+C QN VGE +TVHA P+ + PQ + V A+
Sbjct: 75 DENVYECVAQNSVGE-------ITVHAKLTVLREDQLPSGFPNIDMGPQLKVVERTRTAT 127
Query: 56 FQCVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALS 115
C A G+P P + W ++ V P + G + + G L+I+ ++ D G + C A +
Sbjct: 128 MLCAASGNPDPEITWFKDFLPV--DPSASNGRIKQLRSGALQIESSEETDQGKYECVATN 185
Query: 116 VAGSTTVRAFLQVTSVEDTPPPIVQVGPSNQTLPLHSVAFLPCQAVGSPPPHIRWYKNGN 175
AG V++ P + S++ +P +V + C AVGSP P+++W +
Sbjct: 186 SAGVRYSSPANLYVRVQNVAPRFSILPMSHEIMPGGNVN-ITCVAVGSPMPYVKWMQGAE 244
Query: 176 SLPPED 181
L PED
Sbjct: 245 DLTPED 250
Score = 54.7 bits (130), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 38/131 (29%), Positives = 58/131 (44%), Gaps = 13/131 (9%)
Query: 2 ITEVKKSDEGKYQCYVQNMVGERETKPALLTV---HAPPSFVVRPQDQKVGLNGIASFQC 58
I +++D+GKY+C N G R + PA L V + P F + P ++ G + C
Sbjct: 168 IESSEETDQGKYECVATNSAGVRYSSPANLYVRVQNVAPRFSILPMSHEIMPGGNVNITC 227
Query: 59 VAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAG 118
VA GSP+P V W Q + G L + V+ D+ + C A+S G
Sbjct: 228 VAVGSPMPYVKWMQGAEDLTPEDDMPVGR------NVLELTDVK--DSANYTCVAMSSLG 279
Query: 119 STTVRAFLQVT 129
+ A Q+T
Sbjct: 280 --VIEAVAQIT 288
Score = 28.1 bits (61), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
Query: 201 FRAEPKDTRVASGETALLECGPPKGQPEPTLHWKKNGQFID 241
F EPKD SG A C G P+P + W K G+ ++
Sbjct: 9 FIKEPKDQIGVSGGVASFVCQA-TGDPKPRVTWNKKGKKVN 48
>pdb|3PXH|A Chain A, Tandem Ig Domains Of Tyrosine Phosphatase Lar
Length = 201
Score = 71.2 bits (173), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 52/170 (30%), Positives = 77/170 (45%), Gaps = 18/170 (10%)
Query: 37 PSFVVRPQDQKVGLNGIASFQCVAEGSPLPSVFWTQEGS-------QVLMFPGNAYGHLH 89
P FV P+DQ G+ASF C A G P P + W ++G +V+ F A L
Sbjct: 8 PVFVKVPEDQTGLSGGVASFVCQATGEPKPRITWMKKGKKVSSQRFEVIEFDDGAGSVLR 67
Query: 90 VTQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVTSVEDTPP--PIVQVGPSNQT 147
+ LR+Q D + C+A + G A L V + P P + +GP +
Sbjct: 68 IQ---PLRVQ----RDEAIYECTATNSLGEINTSAKLSVLEEDQLPSGFPTIDMGPQLKV 120
Query: 148 LPLHSVAFLPCQAVGSPPPHIRWYKNGNSLPP--EDTRINVSSSGSLQID 195
+ A + C A G+P P I W+K+ + P + RI SG+LQI+
Sbjct: 121 VEKGRTATMLCAAGGNPDPEISWFKDFLPVDPAASNGRIKQLRSGALQIE 170
Score = 47.4 bits (111), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 31/117 (26%), Positives = 54/117 (46%), Gaps = 8/117 (6%)
Query: 9 DEGKYQCYVQNMVGERETKPALLTVHAP------PSFVVRPQDQKVGLNGIASFQCVAEG 62
DE Y+C N +GE T L + P+ + PQ + V A+ C A G
Sbjct: 76 DEAIYECTATNSLGEINTSAKLSVLEEDQLPSGFPTIDMGPQLKVVEKGRTATMLCAAGG 135
Query: 63 SPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGS 119
+P P + W ++ + + P + G + + G L+I+ ++ D G + C A + AG+
Sbjct: 136 NPDPEISWFKD--FLPVDPAASNGRIKQLRSGALQIESSEESDQGKYECVATNSAGT 190
Score = 32.0 bits (71), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 19/33 (57%)
Query: 2 ITEVKKSDEGKYQCYVQNMVGERETKPALLTVH 34
I ++SD+GKY+C N G R + PA L V
Sbjct: 169 IESSEESDQGKYECVATNSAGTRYSAPANLYVR 201
>pdb|2YD6|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human
Receptor Protein Tyrosine Phosphatase Delta
pdb|2YD7|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human
Receptor Protein Tyrosine Phosphatase Delta
pdb|2YD7|B Chain B, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human
Receptor Protein Tyrosine Phosphatase Delta
Length = 212
Score = 68.6 bits (166), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 53/178 (29%), Positives = 79/178 (44%), Gaps = 21/178 (11%)
Query: 32 TVHAPPSFVVRPQDQKVGLNGIASFQCVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVT 91
T PP F P DQ G+ASF C A G P P + W ++G +V N +
Sbjct: 2 TGETPPRFTRTPVDQTGVSGGVASFICQATGDPRPKIVWNKKGKKV----SNQRFEVIEF 57
Query: 92 QEGT---LRIQGVQK-EDAGFFVCSALSVAGSTTVRAFLQVTSVEDTPP--PIVQVGPSN 145
+G+ LRIQ ++ D + C A + G +V L V + P P + +GP
Sbjct: 58 DDGSGSVLRIQPLRTPRDEAIYECVASNNVGEISVSTRLTVLREDQIPRGFPTIDMGPQL 117
Query: 146 QTLPLHSVAFLPCQAVGSPPPHIRWYKNGNSLPPEDT--------RINVSSSGSLQID 195
+ + A + C A G+P P I W+K+ P DT ++ S G+LQI+
Sbjct: 118 KVVERTRTATMLCAASGNPDPEITWFKD---FLPVDTSNNNGRIKQLRSESIGALQIE 172
Score = 44.3 bits (103), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 32/118 (27%), Positives = 49/118 (41%), Gaps = 7/118 (5%)
Query: 9 DEGKYQCYVQNMVGERETKPALLTVHAP------PSFVVRPQDQKVGLNGIASFQCVAEG 62
DE Y+C N VGE L + P+ + PQ + V A+ C A G
Sbjct: 75 DEAIYECVASNNVGEISVSTRLTVLREDQIPRGFPTIDMGPQLKVVERTRTATMLCAASG 134
Query: 63 SPLPSVFWTQEGSQVLMFPGNA-YGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGS 119
+P P + W ++ V N L G L+I+ ++ D G + C A + AG+
Sbjct: 135 NPDPEITWFKDFLPVDTSNNNGRIKQLRSESIGALQIEQSEESDQGKYECVATNSAGT 192
Score = 32.7 bits (73), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 20/34 (58%)
Query: 2 ITEVKKSDEGKYQCYVQNMVGERETKPALLTVHA 35
I + ++SD+GKY+C N G R + PA L V
Sbjct: 171 IEQSEESDQGKYECVATNSAGTRYSAPANLYVRG 204
>pdb|3B43|A Chain A, I-band Fragment I65-i70 From Titin
Length = 570
Score = 67.8 bits (164), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 67/290 (23%), Positives = 110/290 (37%), Gaps = 42/290 (14%)
Query: 2 ITEVKKSDEGKYQCYVQNMVGERETKPAL-LTVH-APPSFVVRPQDQKVGLNGIASFQCV 59
I + +S G+Y C N +G + L L+ H PP F ++P + L +F+C
Sbjct: 161 ILQTDQSHVGQYNCSASNPLGTASSSAKLTLSEHEVPPFFDLKPVSVDLALGESGTFKCH 220
Query: 60 AEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGS 119
G+ + W ++ ++ PG Y V TL + V K DAG + C A +VAG
Sbjct: 221 VTGTAPIKITWAKDNREIR--PGGNYKMTLVENTATLTVLKVTKGDAGQYTCYASNVAGK 278
Query: 120 TTVRAFLQVTSVEDTPPPIVQVGPSNQTLPLHSVAFLPCQAVGSPPPHIRWYKNGNSLPP 179
+ A L V PP ++ ++ + C+ GSP + WYK+ +
Sbjct: 279 DSCSAQLGVQE----PPRFIKKLEPSRIVKQDEHTRYECKIGGSPEIKVLWYKDETEIQE 334
Query: 180 ---------------EDTRINVSSSGSLQIDVLRDD----------------FRAEPKDT 208
E ++V SG + FR +P
Sbjct: 335 SSKFRMSFVESVAVLEMYNLSVEDSGDYTCEAHNAAGSASSSTSLKVKEPPVFRKKPHPV 394
Query: 209 RVASGETALLECGPPKGQPEPTLHWKKNGQFIDLESSKRVSILGDPWFDS 258
G LEC +G P + W K+ + +L S K+ I+ + + S
Sbjct: 395 ETLKGADVHLEC-ELQGTPPFQVSWHKDKR--ELRSGKKYKIMSENFLTS 441
Score = 63.5 bits (153), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 49/181 (27%), Positives = 77/181 (42%), Gaps = 6/181 (3%)
Query: 1 MITEVKKSDEGKYQCYVQNMVGERETKPALLTVH--APPSFVVRPQDQKVGLNGIASFQC 58
+I +V SD G+Y C +N VG + L+ PPSF + +D L +F+C
Sbjct: 64 VINKVDHSDVGEYTCKAENSVGAVASSAVLVIKERKLPPSFARKLKDVHETLGFPVAFEC 123
Query: 59 VAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAG 118
GS V W ++G ++L N + TL+I + G + CSA + G
Sbjct: 124 RINGSEPLQVSWYKDG-ELLKDDANLQTSF-IHNVATLQILQTDQSHVGQYNCSASNPLG 181
Query: 119 STTVRAFLQVTSVEDTPPPIVQVGPSNQTLPLHSVAFLPCQAVGSPPPHIRWYKNGNSLP 178
+ + A L ++ E PP + P + L L C G+ P I W K+ +
Sbjct: 182 TASSSAKLTLS--EHEVPPFFDLKPVSVDLALGESGTFKCHVTGTAPIKITWAKDNREIR 239
Query: 179 P 179
P
Sbjct: 240 P 240
Score = 52.0 bits (123), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 42/162 (25%), Positives = 71/162 (43%), Gaps = 8/162 (4%)
Query: 36 PPSFVVRPQDQKVGLNGIASFQCVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGT 95
PP F+ + + + + QC +G+P + W +E +++ P AY +
Sbjct: 5 PPYFIEPLEHVEAAIGEPITLQCKVDGTPEIRIAWYKEHTKLRSAP--AYKMQFKNNVAS 62
Query: 96 LRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVTSVEDTPPPIVQVGPSNQTLPLHSVAF 155
L I V D G + C A + G+ A L + + P ++ ++TL VAF
Sbjct: 63 LVINKVDHSDVGEYTCKAENSVGAVASSAVLVIKERKLPPSFARKLKDVHETLGF-PVAF 121
Query: 156 LPCQAVGSPPPHIRWYKNGNSLPPEDTRINVS---SSGSLQI 194
C+ GS P + WYK+G L +D + S + +LQI
Sbjct: 122 -ECRINGSEPLQVSWYKDGELL-KDDANLQTSFIHNVATLQI 161
Score = 46.6 bits (109), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 35/127 (27%), Positives = 56/127 (44%), Gaps = 2/127 (1%)
Query: 2 ITEVKKSDEGKYQCYVQNMVGERETKPALLTVHAPPSFVVRPQDQKVGLNGIASFQCVAE 61
I V +D G+YQC N VG +T +T+ APP FV + D + Q E
Sbjct: 444 ILNVDSADIGEYQCKASNDVG-SDTCVGSITLKAPPRFVKKLSDISTVVGEEVQLQATIE 502
Query: 62 GSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTT 121
G+ SV W ++ +++ N + + TL+ + +AG + C + AG+
Sbjct: 503 GAEPISVAWFKDKGEIVRESDNIWIS-YSENIATLQFSRAEPANAGKYTCQIKNEAGTQE 561
Query: 122 VRAFLQV 128
A L V
Sbjct: 562 CFATLSV 568
>pdb|3KLD|A Chain A, Ptprg Cntn4 Complex
Length = 384
Score = 66.2 bits (160), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 53/206 (25%), Positives = 85/206 (41%), Gaps = 22/206 (10%)
Query: 2 ITEVKKSDEGKYQCYVQNMVGERET----------KPALLTVHAPPSFVVRPQDQKVGLN 51
I +V+KSD G Y C V N V + ++ + P V P+
Sbjct: 161 IAKVEKSDVGNYTCVVTNTVTNHKVLGPPTPLILRNDGVMGEYEPKIEVQFPETVPAEKG 220
Query: 52 GIASFQCVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVC 111
+C A G+P+P++ W + + + + G L I Q+EDAG + C
Sbjct: 221 TTVKLECFALGNPVPTILWRRADGKPIARKARRH-----KSNGILEIPNFQQEDAGSYEC 275
Query: 112 SALSVAGSTTVRAFLQVTSVEDTPPPIVQVGPSNQTLPLHSVAFLPCQAVGSPPPHIRWY 171
A + G + L + P VQ+ ++ + + F C+A G P P RW
Sbjct: 276 VAENSRGKNVAKGQLTFYA----QPNWVQI-INDIHVAMEESVFWECKANGRPKPTYRWL 330
Query: 172 KNGNSLPPEDTRINVSSSGSLQIDVL 197
KNG+ L D RI + G+L I ++
Sbjct: 331 KNGDPLLTRD-RIQI-EQGTLNITIV 354
Score = 52.8 bits (125), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 38/129 (29%), Positives = 57/129 (44%), Gaps = 7/129 (5%)
Query: 2 ITEVKKSDEGKYQCYVQNMVGERETKPALLTVHAPPSFVVRPQDQKVGLNGIASFQCVAE 61
I ++ D G Y+C +N G+ K LT +A P++V D V + ++C A
Sbjct: 262 IPNFQQEDAGSYECVAENSRGKNVAK-GQLTFYAQPNWVQIINDIHVAMEESVFWECKAN 320
Query: 62 GSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTT 121
G P P+ W + G +L + + Q GTL I V DAG + C A + G
Sbjct: 321 GRPKPTYRWLKNGDPLL-----TRDRIQIEQ-GTLNITIVNLSDAGMYQCVAENKHGVIF 374
Query: 122 VRAFLQVTS 130
A L V +
Sbjct: 375 SSAELSVIA 383
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 68/272 (25%), Positives = 97/272 (35%), Gaps = 49/272 (18%)
Query: 6 KKSDEGKYQCYVQNMVGERETKPALLTVHAPPSFVVRPQDQKVGLNGIASFQCVAEGSPL 65
K D G YQC N G ++ A L +F R + G V P
Sbjct: 71 KTQDAGTYQCIATNSFGTIVSREAKLQFAYLENFKTRTRSTVSVRRGQG---MVLLCGPP 127
Query: 66 PSVFWTQEGSQVLMF---PGNAYGHLHVTQE-GTLRIQGVQKEDAGFFVCSALSVAGSTT 121
P + E S +F P V+QE G L I V+K D G + C + +
Sbjct: 128 PH---SGELSYAWIFNEYPSYQDNRRFVSQETGNLYIAKVEKSDVGNYTCVVTNTVTNHK 184
Query: 122 VRA-----FLQVTSVEDTPPPIVQVGPSNQTLPLH--SVAFLPCQAVGSPPPHIRWYKNG 174
V L+ V P ++V +T+P + L C A+G+P P I W +
Sbjct: 185 VLGPPTPLILRNDGVMGEYEPKIEV-QFPETVPAEKGTTVKLECFALGNPVPTILW-RRA 242
Query: 175 NSLPPEDTRINVSSSGSLQIDVLRDD-----------------------FRAEPK----- 206
+ P S+G L+I + + F A+P
Sbjct: 243 DGKPIARKARRHKSNGILEIPNFQQEDAGSYECVAENSRGKNVAKGQLTFYAQPNWVQII 302
Query: 207 -DTRVASGETALLECGPPKGQPEPTLHWKKNG 237
D VA E+ EC G+P+PT W KNG
Sbjct: 303 NDIHVAMEESVFWEC-KANGRPKPTYRWLKNG 333
Score = 35.4 bits (80), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 36/136 (26%), Positives = 49/136 (36%), Gaps = 37/136 (27%)
Query: 137 PIVQVGPSNQTLPLHS---VAFLPCQAVGSPPPHIRWYKNGNSLP--------------- 178
P+ PS+ PL S L C+ G+P PHIRW NG +
Sbjct: 6 PVFVQEPSHVMFPLDSEEKKVKLSCEVKGNPKPHIRWKLNGTDVDIGMDFRYSVVDGSLL 65
Query: 179 ---PEDTR--------------INVSSSGSLQIDVLRDDFRAEPKDT-RVASGETALLEC 220
P T+ VS LQ L ++F+ + T V G+ +L C
Sbjct: 66 INNPNKTQDAGTYQCIATNSFGTIVSREAKLQFAYL-ENFKTRTRSTVSVRRGQGMVLLC 124
Query: 221 GPPKGQPEPTLHWKKN 236
GPP E + W N
Sbjct: 125 GPPPHSGELSYAWIFN 140
Score = 31.6 bits (70), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 31/102 (30%), Positives = 48/102 (47%), Gaps = 15/102 (14%)
Query: 37 PSFVVRPQD---QKVGLNGIASFQCVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQE 93
PS V+ P D +KV L+ C +G+P P + W G+ V + Y + +
Sbjct: 12 PSHVMFPLDSEEKKVKLS------CEVKGNPKPHIRWKLNGTDVDIGMDFRYSVV----D 61
Query: 94 GTLRIQGVQK-EDAGFFVCSALSVAGSTTVR-AFLQVTSVED 133
G+L I K +DAG + C A + G+ R A LQ +E+
Sbjct: 62 GSLLINNPNKTQDAGTYQCIATNSFGTIVSREAKLQFAYLEN 103
Score = 28.9 bits (63), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 224 KGQPEPTLHWKKNGQFIDLESSKRVSIL 251
KG P+P + WK NG +D+ R S++
Sbjct: 33 KGNPKPHIRWKLNGTDVDIGMDFRYSVV 60
>pdb|3JXA|A Chain A, Immunoglobulin Domains 1-4 Of Mouse Cntn4
pdb|3JXA|B Chain B, Immunoglobulin Domains 1-4 Of Mouse Cntn4
Length = 383
Score = 66.2 bits (160), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 53/206 (25%), Positives = 85/206 (41%), Gaps = 22/206 (10%)
Query: 2 ITEVKKSDEGKYQCYVQNMVGERET----------KPALLTVHAPPSFVVRPQDQKVGLN 51
I +V+KSD G Y C V N V + ++ + P V P+
Sbjct: 160 IAKVEKSDVGNYTCVVTNTVTNHKVLGPPTPLILRNDGVMGEYEPKIEVQFPETVPAEKG 219
Query: 52 GIASFQCVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVC 111
+C A G+P+P++ W + + + + G L I Q+EDAG + C
Sbjct: 220 TTVKLECFALGNPVPTILWRRADGKPIARKARRH-----KSNGILEIPNFQQEDAGSYEC 274
Query: 112 SALSVAGSTTVRAFLQVTSVEDTPPPIVQVGPSNQTLPLHSVAFLPCQAVGSPPPHIRWY 171
A + G + L + P VQ+ ++ + + F C+A G P P RW
Sbjct: 275 VAENSRGKNVAKGQLTFYA----QPNWVQI-INDIHVAMEESVFWECKANGRPKPTYRWL 329
Query: 172 KNGNSLPPEDTRINVSSSGSLQIDVL 197
KNG+ L D RI + G+L I ++
Sbjct: 330 KNGDPLLTRD-RIQI-EQGTLNITIV 353
Score = 52.8 bits (125), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 38/129 (29%), Positives = 57/129 (44%), Gaps = 7/129 (5%)
Query: 2 ITEVKKSDEGKYQCYVQNMVGERETKPALLTVHAPPSFVVRPQDQKVGLNGIASFQCVAE 61
I ++ D G Y+C +N G+ K LT +A P++V D V + ++C A
Sbjct: 261 IPNFQQEDAGSYECVAENSRGKNVAK-GQLTFYAQPNWVQIINDIHVAMEESVFWECKAN 319
Query: 62 GSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTT 121
G P P+ W + G +L + + Q GTL I V DAG + C A + G
Sbjct: 320 GRPKPTYRWLKNGDPLL-----TRDRIQIEQ-GTLNITIVNLSDAGMYQCVAENKHGVIF 373
Query: 122 VRAFLQVTS 130
A L V +
Sbjct: 374 SSAELSVIA 382
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 68/272 (25%), Positives = 97/272 (35%), Gaps = 49/272 (18%)
Query: 6 KKSDEGKYQCYVQNMVGERETKPALLTVHAPPSFVVRPQDQKVGLNGIASFQCVAEGSPL 65
K D G YQC N G ++ A L +F R + G V P
Sbjct: 70 KTQDAGTYQCIATNSFGTIVSREAKLQFAYLENFKTRTRSTVSVRRGQG---MVLLCGPP 126
Query: 66 PSVFWTQEGSQVLMF---PGNAYGHLHVTQE-GTLRIQGVQKEDAGFFVCSALSVAGSTT 121
P + E S +F P V+QE G L I V+K D G + C + +
Sbjct: 127 PH---SGELSYAWIFNEYPSYQDNRRFVSQETGNLYIAKVEKSDVGNYTCVVTNTVTNHK 183
Query: 122 VRA-----FLQVTSVEDTPPPIVQVGPSNQTLPLH--SVAFLPCQAVGSPPPHIRWYKNG 174
V L+ V P ++V +T+P + L C A+G+P P I W +
Sbjct: 184 VLGPPTPLILRNDGVMGEYEPKIEV-QFPETVPAEKGTTVKLECFALGNPVPTILW-RRA 241
Query: 175 NSLPPEDTRINVSSSGSLQIDVLRDD-----------------------FRAEPK----- 206
+ P S+G L+I + + F A+P
Sbjct: 242 DGKPIARKARRHKSNGILEIPNFQQEDAGSYECVAENSRGKNVAKGQLTFYAQPNWVQII 301
Query: 207 -DTRVASGETALLECGPPKGQPEPTLHWKKNG 237
D VA E+ EC G+P+PT W KNG
Sbjct: 302 NDIHVAMEESVFWEC-KANGRPKPTYRWLKNG 332
Score = 35.4 bits (80), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 36/136 (26%), Positives = 49/136 (36%), Gaps = 37/136 (27%)
Query: 137 PIVQVGPSNQTLPLHS---VAFLPCQAVGSPPPHIRWYKNGNSLP--------------- 178
P+ PS+ PL S L C+ G+P PHIRW NG +
Sbjct: 5 PVFVQEPSHVMFPLDSEEKKVKLSCEVKGNPKPHIRWKLNGTDVDIGMDFRYSVVDGSLL 64
Query: 179 ---PEDTR--------------INVSSSGSLQIDVLRDDFRAEPKDT-RVASGETALLEC 220
P T+ VS LQ L ++F+ + T V G+ +L C
Sbjct: 65 INNPNKTQDAGTYQCIATNSFGTIVSREAKLQFAYL-ENFKTRTRSTVSVRRGQGMVLLC 123
Query: 221 GPPKGQPEPTLHWKKN 236
GPP E + W N
Sbjct: 124 GPPPHSGELSYAWIFN 139
Score = 31.6 bits (70), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 31/102 (30%), Positives = 48/102 (47%), Gaps = 15/102 (14%)
Query: 37 PSFVVRPQD---QKVGLNGIASFQCVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQE 93
PS V+ P D +KV L+ C +G+P P + W G+ V + Y + +
Sbjct: 11 PSHVMFPLDSEEKKVKLS------CEVKGNPKPHIRWKLNGTDVDIGMDFRYSVV----D 60
Query: 94 GTLRIQGVQK-EDAGFFVCSALSVAGSTTVR-AFLQVTSVED 133
G+L I K +DAG + C A + G+ R A LQ +E+
Sbjct: 61 GSLLINNPNKTQDAGTYQCIATNSFGTIVSREAKLQFAYLEN 102
Score = 28.9 bits (63), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 224 KGQPEPTLHWKKNGQFIDLESSKRVSIL 251
KG P+P + WK NG +D+ R S++
Sbjct: 32 KGNPKPHIRWKLNGTDVDIGMDFRYSVV 59
>pdb|3LAF|A Chain A, Structure Of Dcc, A Netrin-1 Receptor
Length = 403
Score = 64.3 bits (155), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 42/128 (32%), Positives = 59/128 (46%), Gaps = 6/128 (4%)
Query: 1 MITEVKKSDEGKYQCYVQNMVGERETKPALLTVHAPPSFVVRPQDQKVGLNGIASFQCVA 60
+I+ V D G Y C V E + A LTV PP F+ P + + F+C
Sbjct: 278 LISNVTDDDSGTYTCVV-TYKNENISASAELTVLVPPWFLNHPSNLYAYESMDIEFECAV 336
Query: 61 EGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGST 120
G P+P+V W + G V+ P + + + LRI GV K D GF+ C A + AG+
Sbjct: 337 SGKPVPTVNWMKNGDVVI--PSD---YFQIVGGSNLRILGVVKSDEGFYQCVAENEAGNA 391
Query: 121 TVRAFLQV 128
A L V
Sbjct: 392 QSSAQLIV 399
Score = 60.1 bits (144), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 60/266 (22%), Positives = 99/266 (37%), Gaps = 35/266 (13%)
Query: 7 KSDEGKYQCYVQ-NMVGERETKPALLTVHAPPSFVVRPQDQKVGLNGIASFQCVAEGSPL 65
K DEG YQC G ++ A + V P F+ + + + +C G P+
Sbjct: 91 KPDEGLYQCEASLGDSGSIISRTAKVMVAGPLRFLSQTESITAFMGDTVLLKCEVIGDPM 150
Query: 66 PSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTT-VRA 124
P++ W + + PG++ + V G L+I +Q D+G + CSA + A + T A
Sbjct: 151 PTIHWQKNQQDLNPIPGDS--RVVVLPSGALQISRLQPGDSGVYRCSARNPASTRTGNEA 208
Query: 125 FLQVTSVEDTPPPIVQVG-PSNQTLPLHSVAFLPCQAVGSPPPHIRWYKNGNSLPPEDTR 183
+++ S + + PSN A L C G PPP W + + +
Sbjct: 209 EVRILSDPGLHRQLYFLQRPSNVIAIEGKDAVLECCVSGYPPPSFTWLRGEEVIQLRSKK 268
Query: 184 INVSSSGSLQIDVLRDD-----------------------------FRAEPKDTRVASGE 214
++ +L I + DD F P +
Sbjct: 269 YSLLGGSNLLISNVTDDDSGTYTCVVTYKNENISASAELTVLVPPWFLNHPSNLYAYESM 328
Query: 215 TALLECGPPKGQPEPTLHWKKNGQFI 240
EC G+P PT++W KNG +
Sbjct: 329 DIEFECA-VSGKPVPTVNWMKNGDVV 353
Score = 56.2 bits (134), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 51/205 (24%), Positives = 77/205 (37%), Gaps = 15/205 (7%)
Query: 2 ITEVKKSDEGKYQCYVQNMVGERETKPALLTVHAPPS------FVVRPQDQKVGLNGIAS 55
I+ ++ D G Y+C +N R A + + + P F+ RP + A
Sbjct: 181 ISRLQPGDSGVYRCSARNPASTRTGNEAEVRILSDPGLHRQLYFLQRPSNVIAIEGKDAV 240
Query: 56 FQCVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALS 115
+C G P PS W + G +V+ Y L + L I V +D+G + C
Sbjct: 241 LECCVSGYPPPSFTWLR-GEEVIQLRSKKYSLLGGSN---LLISNVTDDDSGTYTCVVTY 296
Query: 116 VAGSTTVRAFLQVTSVEDTPPPIVQVGPSNQTLPLHSVAFLPCQAVGSPPPHIRWYKNGN 175
+ + A L V PP PSN C G P P + W KNG+
Sbjct: 297 KNENISASAELTVLV-----PPWFLNHPSNLYAYESMDIEFECAVSGKPVPTVNWMKNGD 351
Query: 176 SLPPEDTRINVSSSGSLQIDVLRDD 200
+ P D V S + V++ D
Sbjct: 352 VVIPSDYFQIVGGSNLRILGVVKSD 376
Score = 55.1 bits (131), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 67/259 (25%), Positives = 92/259 (35%), Gaps = 54/259 (20%)
Query: 39 FVVRPQDQKVGLNGIASFQCVAEGSP-LPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLR 97
FV P D G C AE +P + W ++G L+ G+L
Sbjct: 24 FVSEPSDAVTMRGGNVLLNCSAESDRGVPVIKWKKDG---LILALGMDDRKQQLPNGSLL 80
Query: 98 IQGV-----QKEDAGFFVCSA-LSVAGSTTVRAFLQVTSVEDTPPPIVQVGPSNQTLPLH 151
IQ + K D G + C A L +GS R V P + T +
Sbjct: 81 IQNILHSRHHKPDEGLYQCEASLGDSGSIISRT----AKVMVAGPLRFLSQTESITAFMG 136
Query: 152 SVAFLPCQAVGSPPPHIRWYKNGNSLP--PEDTRINVSSSGSLQID-------------- 195
L C+ +G P P I W KN L P D+R+ V SG+LQI
Sbjct: 137 DTVLLKCEVIGDPMPTIHWQKNQQDLNPIPGDSRVVVLPSGALQISRLQPGDSGVYRCSA 196
Query: 196 ---------------VLRDD-------FRAEPKDTRVASGETALLECGPPKGQPEPTLHW 233
+L D F P + G+ A+LEC G P P+ W
Sbjct: 197 RNPASTRTGNEAEVRILSDPGLHRQLYFLQRPSNVIAIEGKDAVLECC-VSGYPPPSFTW 255
Query: 234 KKNGQFIDLESSKRVSILG 252
+ + I L SK+ S+LG
Sbjct: 256 LRGEEVIQLR-SKKYSLLG 273
>pdb|2V5R|A Chain A, Structural Basis For Dscam Isoform Specificity
pdb|2V5R|B Chain B, Structural Basis For Dscam Isoform Specificity
Length = 391
Score = 64.3 bits (155), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 41/111 (36%), Positives = 54/111 (48%), Gaps = 13/111 (11%)
Query: 1 MITEVKKSDEGKYQCYVQNMVGERETKPALLTVHAPPSFVVRPQDQKVGLNGIASFQCVA 60
+I + D GKY C V N VG E+ +LTV AP S + P Q V A F C
Sbjct: 276 IIKDAVVEDSGKYLCVVNNSVGG-ESVETVLTVTAPLSAKIDPPTQTVDFGRPAVFTCQY 334
Query: 61 EGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVC 111
G+P+ +V W ++ G A GH E LRI+ V+KED G + C
Sbjct: 335 TGNPIKTVSWMKD--------GKAIGH----SESVLRIESVKKEDKGMYQC 373
Score = 55.1 bits (131), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 57/204 (27%), Positives = 88/204 (43%), Gaps = 28/204 (13%)
Query: 2 ITEVKKSDEGK-YQCYVQN-MVGERE--TKPALLTVHAPPSFV---VRPQDQ----KVGL 50
I EV D K YQC ++ + GE L + P V V PQD+ V L
Sbjct: 170 IREVGPEDGYKSYQCRTKHRLTGETRLSATKGRLVITEPVGSVRPKVNPQDKHQFIDVEL 229
Query: 51 NGIASFQCVAEGSPLPSVFWTQ--EGS---QVLMFPGNAYGHLHVTQ-EGTLRIQGVQKE 104
S C+A+ P PS W + EG+ Q ++ + V Q GTL I+ E
Sbjct: 230 ASSYSLLCMAQSYPTPSFRWYKFIEGTTRKQAVVL------NDRVKQVSGTLIIKDAVVE 283
Query: 105 DAGFFVCSALSVAGSTTVRAFLQVTSVEDTPPPIVQVGPSNQTLPLHSVAFLPCQAVGSP 164
D+G ++C + G +V L VT+ P ++ P QT+ A CQ G+P
Sbjct: 284 DSGKYLCVVNNSVGGESVETVLTVTA-----PLSAKIDPPTQTVDFGRPAVFTCQYTGNP 338
Query: 165 PPHIRWYKNGNSLPPEDTRINVSS 188
+ W K+G ++ ++ + + S
Sbjct: 339 IKTVSWMKDGKAIGHSESVLRIES 362
Score = 30.4 bits (67), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 57/248 (22%), Positives = 100/248 (40%), Gaps = 48/248 (19%)
Query: 37 PSFVVRPQDQKVGLNGI-ASFQCVAEGSPLPSVFWTQ-EGSQVLMFPGNAYGHLHVTQEG 94
P F+ P ++ N A +C A G+P+P + W + +G+ V G+ G ++ +G
Sbjct: 4 PVFLKEPTNRIDFSNSTGAEIECKASGNPMPEIIWIRSDGTAV----GDVPGLRQISSDG 59
Query: 95 TLRIQGVQKED------AGFFVCSALSVAGSTTVRAFLQVTSVEDTPPPIVQVGPS---N 145
L + ED A + C A + GS R + V +V ++Q S N
Sbjct: 60 KLVFPPFRAEDYRQEVHAQVYACLARNQFGSIISRD-VHVRAV------VIQSYESEADN 112
Query: 146 QTLPLHSVAFLPCQAVGSPPPHIR-------WYKNG------NSLPPEDTRINVSSSGSL 192
+ + + + C+ P ++ W + N+ D + V SG L
Sbjct: 113 EYVIRGNSVVMKCEI----PSYVADFVFVDLWLDSEGRNYYPNNAAETDGKYLVLPSGEL 168
Query: 193 QIDVL--RDDFRAEPKDTR-VASGETAL------LECGPPKGQPEPTLHWKKNGQFIDLE 243
I + D +++ T+ +GET L L P G P ++ + QFID+E
Sbjct: 169 HIREVGPEDGYKSYQCRTKHRLTGETRLSATKGRLVITEPVGSVRPKVNPQDKHQFIDVE 228
Query: 244 SSKRVSIL 251
+ S+L
Sbjct: 229 LASSYSLL 236
Score = 30.0 bits (66), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 19/28 (67%), Gaps = 3/28 (10%)
Query: 2 ITEVKKSDEGKYQCYVQNMVGERETKPA 29
I VKK D+G YQC+V+N +RE+ A
Sbjct: 360 IESVKKEDKGMYQCFVRN---DRESAEA 384
>pdb|2V5M|A Chain A, Structural Basis For Dscam Isoform Specificity
Length = 388
Score = 63.9 bits (154), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 41/111 (36%), Positives = 54/111 (48%), Gaps = 13/111 (11%)
Query: 1 MITEVKKSDEGKYQCYVQNMVGERETKPALLTVHAPPSFVVRPQDQKVGLNGIASFQCVA 60
+I + D GKY C V N VG E+ +LTV AP S + P Q V A F C
Sbjct: 273 IIKDAVVEDSGKYLCVVNNSVGG-ESVETVLTVTAPLSAKIDPPTQTVDFGRPAVFTCQY 331
Query: 61 EGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVC 111
G+P+ +V W ++ G A GH E LRI+ V+KED G + C
Sbjct: 332 TGNPIKTVSWMKD--------GKAIGH----SESVLRIESVKKEDKGMYQC 370
Score = 52.8 bits (125), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 55/205 (26%), Positives = 88/205 (42%), Gaps = 31/205 (15%)
Query: 2 ITEVKKSDEGK-YQCYVQN-MVGERE----------TKPALLTVHAPPSFVVRPQDQKVG 49
I EV D K YQC ++ + GE T+P + P+ V +P + V
Sbjct: 168 IREVGPEDGYKSYQCRTKHRLTGETRLSATKGRLVITEPISSSAPRTPALVQKPLELMVA 227
Query: 50 LNGIASFQCVAEGSPLPSVFWTQ--EGS---QVLMFPGNAYGHLHVTQ-EGTLRIQGVQK 103
S C A+G P PS W + EG+ Q ++ + V Q GTL I+
Sbjct: 228 HT--ISLLCPAQGFPAPSFRWYKFIEGTTRKQAVVL------NDRVKQVSGTLIIKDAVV 279
Query: 104 EDAGFFVCSALSVAGSTTVRAFLQVTSVEDTPPPIVQVGPSNQTLPLHSVAFLPCQAVGS 163
ED+G ++C + G +V L VT+ P ++ P QT+ A CQ G+
Sbjct: 280 EDSGKYLCVVNNSVGGESVETVLTVTA-----PLSAKIDPPTQTVDFGRPAVFTCQYTGN 334
Query: 164 PPPHIRWYKNGNSLPPEDTRINVSS 188
P + W K+G ++ ++ + + S
Sbjct: 335 PIKTVSWMKDGKAIGHSESVLRIES 359
Score = 30.0 bits (66), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 25/95 (26%), Positives = 42/95 (44%), Gaps = 12/95 (12%)
Query: 37 PSFVVRPQDQKVGLNGI-ASFQCVAEGSPLPSVFWTQ-EGSQVLMFPGNAYGHLHVTQEG 94
P F+ P ++ N A +C A G+P+P + W + +G+ V G+ G ++ +G
Sbjct: 4 PVFLKEPTNRIDFSNSTGAEIECKASGNPMPEIIWIRSDGTAV----GDVPGLRQISSDG 59
Query: 95 TLRIQGVQKED------AGFFVCSALSVAGSTTVR 123
L + ED A + C A + GS R
Sbjct: 60 KLVFPPFRAEDYRQEVHAQVYACLARNQFGSIISR 94
Score = 30.0 bits (66), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 19/28 (67%), Gaps = 3/28 (10%)
Query: 2 ITEVKKSDEGKYQCYVQNMVGERETKPA 29
I VKK D+G YQC+V+N +RE+ A
Sbjct: 357 IESVKKEDKGMYQCFVRN---DRESAEA 381
>pdb|2V5S|A Chain A, Structural Basis For Dscam Isoform Specificity
pdb|2V5S|B Chain B, Structural Basis For Dscam Isoform Specificity
Length = 394
Score = 63.9 bits (154), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 41/111 (36%), Positives = 54/111 (48%), Gaps = 13/111 (11%)
Query: 1 MITEVKKSDEGKYQCYVQNMVGERETKPALLTVHAPPSFVVRPQDQKVGLNGIASFQCVA 60
+I + D GKY C V N VG E+ +LTV AP S + P Q V A F C
Sbjct: 279 IIKDAVVEDSGKYLCVVNNSVGG-ESVETVLTVTAPLSAKIDPPTQTVDFGRPAVFTCQY 337
Query: 61 EGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVC 111
G+P+ +V W ++ G A GH E LRI+ V+KED G + C
Sbjct: 338 TGNPIKTVSWMKD--------GKAIGH----SESVLRIESVKKEDKGMYQC 376
Score = 52.8 bits (125), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 55/205 (26%), Positives = 88/205 (42%), Gaps = 31/205 (15%)
Query: 2 ITEVKKSDEGK-YQCYVQN-MVGERE----------TKPALLTVHAPPSFVVRPQDQKVG 49
I EV D K YQC ++ + GE T+P + P+ V +P + V
Sbjct: 174 IREVGPEDGYKSYQCRTKHRLTGETRLSATKGRLVITEPISSSAPRTPALVQKPLELMVA 233
Query: 50 LNGIASFQCVAEGSPLPSVFWTQ--EGS---QVLMFPGNAYGHLHVTQ-EGTLRIQGVQK 103
S C A+G P PS W + EG+ Q ++ + V Q GTL I+
Sbjct: 234 HT--ISLLCPAQGFPAPSFRWYKFIEGTTRKQAVVL------NDRVKQVSGTLIIKDAVV 285
Query: 104 EDAGFFVCSALSVAGSTTVRAFLQVTSVEDTPPPIVQVGPSNQTLPLHSVAFLPCQAVGS 163
ED+G ++C + G +V L VT+ P ++ P QT+ A CQ G+
Sbjct: 286 EDSGKYLCVVNNSVGGESVETVLTVTA-----PLSAKIDPPTQTVDFGRPAVFTCQYTGN 340
Query: 164 PPPHIRWYKNGNSLPPEDTRINVSS 188
P + W K+G ++ ++ + + S
Sbjct: 341 PIKTVSWMKDGKAIGHSESVLRIES 365
Score = 30.0 bits (66), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 25/95 (26%), Positives = 42/95 (44%), Gaps = 12/95 (12%)
Query: 37 PSFVVRPQDQKVGLNGI-ASFQCVAEGSPLPSVFWTQ-EGSQVLMFPGNAYGHLHVTQEG 94
P F+ P ++ N A +C A G+P+P + W + +G+ V G+ G ++ +G
Sbjct: 10 PVFLKEPTNRIDFSNSTGAEIECKASGNPMPEIIWIRSDGTAV----GDVPGLRQISSDG 65
Query: 95 TLRIQGVQKED------AGFFVCSALSVAGSTTVR 123
L + ED A + C A + GS R
Sbjct: 66 KLVFPPFRAEDYRQEVHAQVYACLARNQFGSIISR 100
Score = 30.0 bits (66), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 19/28 (67%), Gaps = 3/28 (10%)
Query: 2 ITEVKKSDEGKYQCYVQNMVGERETKPA 29
I VKK D+G YQC+V+N +RE+ A
Sbjct: 363 IESVKKEDKGMYQCFVRN---DRESAEA 387
>pdb|2RJM|A Chain A, 3ig Structure Of Titin Domains I67-I69 E-To-A Mutated
Variant
Length = 284
Score = 63.9 bits (154), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 46/177 (25%), Positives = 82/177 (46%), Gaps = 9/177 (5%)
Query: 2 ITEVKKSDEGKYQCYVQNMVGERETKPALLTVHAPPSFVVRPQDQK-VGLNGIASFQCVA 60
+ +V K D G+Y CY N+ G +++ A L V APP F+ + + + V + ++C
Sbjct: 65 VLKVTKGDAGQYTCYASNVAG-KDSCSAQLGVQAPPRFIKKLEPSRIVKQDEHTRYECKI 123
Query: 61 EGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGST 120
GSP V W ++ +++ + + V L + + ED+G + C A + AGS
Sbjct: 124 GGSPEIKVLWYKDETEIQ--ESSKFRMSFVESVAVLEMYNLSVEDSGDYTCEAHNAAGSA 181
Query: 121 TVRAFLQVTSVEDTPPPIVQVGPSNQTLPLHSVAFLPCQAVGSPPPHIRWYKNGNSL 177
+ L+V PP+ + P + L C+ G+PP + W+K+ L
Sbjct: 182 SSSTSLKVKE-----PPVFRKKPHPVETLKGADVHLECELQGTPPFQVSWHKDKREL 233
Score = 62.0 bits (149), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 58/255 (22%), Positives = 96/255 (37%), Gaps = 40/255 (15%)
Query: 35 APPSFVVRPQDQKVGLNGIASFQCVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEG 94
APP F ++P + L +F+C G+ + W ++ ++ PG Y V
Sbjct: 4 APPFFDLKPVSVDLALGESGTFKCHVTGTAPIKITWAKDNREIR--PGGNYKMTLVENTA 61
Query: 95 TLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVTSVEDTPPPIVQVGPSNQTLPLHSVA 154
TL + V K DAG + C A +VAG + A L V + PP ++ ++ +
Sbjct: 62 TLTVLKVTKGDAGQYTCYASNVAGKDSCSAQLGVQA----PPRFIKKLEPSRIVKQDEHT 117
Query: 155 FLPCQAVGSPPPHIRWYKNGNSLPP---------------EDTRINVSSSGSLQIDVLRD 199
C+ GSP + WYK+ + E ++V SG +
Sbjct: 118 RYECKIGGSPEIKVLWYKDETEIQESSKFRMSFVESVAVLEMYNLSVEDSGDYTCEAHNA 177
Query: 200 D----------------FRAEPKDTRVASGETALLECGPPKGQPEPTLHWKKNGQFIDLE 243
FR +P G LEC +G P + W K+ + +L
Sbjct: 178 AGSASSSTSLKVKEPPVFRKKPHPVETLKGADVHLEC-ELQGTPPFQVSWHKDKR--ELR 234
Query: 244 SSKRVSILGDPWFDS 258
S K+ I+ + + S
Sbjct: 235 SGKKYKIMSENFLTS 249
>pdb|2IEP|A Chain A, Crystal Structure Of Immunoglobulin-Like Domains 1 And 2
Of The Receptor Tyrosine Kinase Musk
pdb|2IEP|B Chain B, Crystal Structure Of Immunoglobulin-Like Domains 1 And 2
Of The Receptor Tyrosine Kinase Musk
Length = 192
Score = 63.5 bits (153), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 49/162 (30%), Positives = 77/162 (47%), Gaps = 16/162 (9%)
Query: 53 IASFQCVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEG-TLRIQGVQKEDAGFFVC 111
+A+F C E P P + WT+ + +F + + G L I V+ D G + C
Sbjct: 24 VATFMCAVESYPQPEISWTRNKILIKLFDT----RYSIRENGQLLTILSVEDSDDGIYCC 79
Query: 112 SALS-VAGSTTVRAFLQVTSVEDTPPPIVQVGPSNQTLPLHSVAFLPCQAVGSPPPHIRW 170
+A + V G+ LQV P + P N + A LPC +G+P P + W
Sbjct: 80 TANNGVGGAVESCGALQVKM-----KPKITRPPINVKIIEGLKAVLPCTTMGNPKPSVSW 134
Query: 171 YKNGNSLPPEDTRINVSSSGSLQI-DVLRDD---FRAEPKDT 208
K G+S E++RI V SGSL+I +V ++D +R K++
Sbjct: 135 IK-GDSALRENSRIAVLESGSLRIHNVQKEDAGQYRCVAKNS 175
Score = 57.8 bits (138), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 43/130 (33%), Positives = 57/130 (43%), Gaps = 8/130 (6%)
Query: 2 ITEVKKSDEGKYQCYVQNMVGERETKPALLTVHAPPSFVVRPQDQKVGLNGIASFQCVAE 61
I V+ SD+G Y C N VG L V P P + K+ A C
Sbjct: 66 ILSVEDSDDGIYCCTANNGVGGAVESCGALQVKMKPKITRPPINVKIIEGLKAVLPCTTM 125
Query: 62 GSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSA---LSVAG 118
G+P PSV W + S + + V + G+LRI VQKEDAG + C A L A
Sbjct: 126 GNPKPSVSWIKGDSAL-----RENSRIAVLESGSLRIHNVQKEDAGQYRCVAKNSLGTAY 180
Query: 119 STTVRAFLQV 128
S V+ ++V
Sbjct: 181 SKLVKLEVEV 190
>pdb|2EDJ|A Chain A, Solution Structure Of The Fifth Ig-Like Domain From Human
Roundabout Homolog 2
Length = 100
Score = 62.4 bits (150), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 29/63 (46%), Positives = 36/63 (57%)
Query: 136 PPIVQVGPSNQTLPLHSVAFLPCQAVGSPPPHIRWYKNGNSLPPEDTRINVSSSGSLQID 195
PPI+ GP+NQTL + A L C+A G P P I W K G + P D R + G+LQI
Sbjct: 8 PPIILQGPANQTLAVDGTALLKCKATGDPLPVISWLKEGFTFPGRDPRATIQEQGTLQIK 67
Query: 196 VLR 198
LR
Sbjct: 68 NLR 70
Score = 61.6 bits (148), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 33/96 (34%), Positives = 51/96 (53%), Gaps = 4/96 (4%)
Query: 34 HAPPSFVVRPQDQKVGLNGIASFQCVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQE 93
PP + P +Q + ++G A +C A G PLP + W +EG FPG + ++
Sbjct: 6 SGPPIILQGPANQTLAVDGTALLKCKATGDPLPVISWLKEG---FTFPGRDP-RATIQEQ 61
Query: 94 GTLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVT 129
GTL+I+ ++ D G + C A S +G T+ A L VT
Sbjct: 62 GTLQIKNLRISDTGTYTCVATSSSGETSWSAVLDVT 97
>pdb|2RIK|A Chain A, I-Band Fragment I67-I69 From Titin
Length = 284
Score = 62.0 bits (149), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 45/177 (25%), Positives = 81/177 (45%), Gaps = 9/177 (5%)
Query: 2 ITEVKKSDEGKYQCYVQNMVGERETKPALLTVHAPPSFVVRPQDQK-VGLNGIASFQCVA 60
+ +V K D G+Y CY N+ G +++ A L V PP F+ + + + V + ++C
Sbjct: 65 VLKVTKGDAGQYTCYASNVAG-KDSCSAQLGVQEPPRFIKKLEPSRIVKQDEHTRYECKI 123
Query: 61 EGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGST 120
GSP V W ++ +++ + + V L + + ED+G + C A + AGS
Sbjct: 124 GGSPEIKVLWYKDETEIQ--ESSKFRMSFVESVAVLEMYNLSVEDSGDYTCEAHNAAGSA 181
Query: 121 TVRAFLQVTSVEDTPPPIVQVGPSNQTLPLHSVAFLPCQAVGSPPPHIRWYKNGNSL 177
+ L+V PP+ + P + L C+ G+PP + W+K+ L
Sbjct: 182 SSSTSLKVKE-----PPVFRKKPHPVETLKGADVHLECELQGTPPFQVSWHKDKREL 233
Score = 61.6 bits (148), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 58/255 (22%), Positives = 95/255 (37%), Gaps = 40/255 (15%)
Query: 35 APPSFVVRPQDQKVGLNGIASFQCVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEG 94
APP F ++P + L +F+C G+ + W ++ ++ PG Y V
Sbjct: 4 APPFFDLKPVSVDLALGESGTFKCHVTGTAPIKITWAKDNREIR--PGGNYKMTLVENTA 61
Query: 95 TLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVTSVEDTPPPIVQVGPSNQTLPLHSVA 154
TL + V K DAG + C A +VAG + A L V PP ++ ++ +
Sbjct: 62 TLTVLKVTKGDAGQYTCYASNVAGKDSCSAQLGVQE----PPRFIKKLEPSRIVKQDEHT 117
Query: 155 FLPCQAVGSPPPHIRWYKNGNSLPP---------------EDTRINVSSSGSLQIDVLRD 199
C+ GSP + WYK+ + E ++V SG +
Sbjct: 118 RYECKIGGSPEIKVLWYKDETEIQESSKFRMSFVESVAVLEMYNLSVEDSGDYTCEAHNA 177
Query: 200 D----------------FRAEPKDTRVASGETALLECGPPKGQPEPTLHWKKNGQFIDLE 243
FR +P G LEC +G P + W K+ + +L
Sbjct: 178 AGSASSSTSLKVKEPPVFRKKPHPVETLKGADVHLEC-ELQGTPPFQVSWHKDKR--ELR 234
Query: 244 SSKRVSILGDPWFDS 258
S K+ I+ + + S
Sbjct: 235 SGKKYKIMSENFLTS 249
>pdb|2WIM|A Chain A, Crystal Structure Of Ncam2 Ig1-3
pdb|2WIM|B Chain B, Crystal Structure Of Ncam2 Ig1-3
Length = 291
Score = 60.8 bits (146), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 50/197 (25%), Positives = 79/197 (40%), Gaps = 13/197 (6%)
Query: 9 DEGKYQCYVQNMVGERETKPALLTVHAPPSF--VVRPQDQKVGLNGIASFQCVAEGSPLP 66
D G Y+C + G+ + +L ++ +F VV PQ+ K G + A C SP P
Sbjct: 71 DAGIYRCQATDAKGQTQEATVVLEIYQKLTFREVVSPQEFKQGED--AEVVCRVSSSPAP 128
Query: 67 SVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSA-LSVAGSTTVRAF 125
+V W +V N + L + K D G + C + G R
Sbjct: 129 AVSWLYHNEEVTTISDNRFAMLANNNLQI---LNINKSDEGIYRCEGRVEARGEIDFRDI 185
Query: 126 LQVTSVEDTPPPIVQVGPS-NQTLPLHSVAFLPCQAVGSPPPHIRWYKNGNSLPPEDTRI 184
+ + +V PP I S N T C+A GSP P I W++NG + + I
Sbjct: 186 IVIVNV---PPAISMPQKSFNATAERGEEMTFSCRASGSPEPAISWFRNGKLIEENEKYI 242
Query: 185 NVSSSGSLQI-DVLRDD 200
S+ L + +++ D
Sbjct: 243 LKGSNTELTVRNIINSD 259
Score = 51.6 bits (122), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 42/129 (32%), Positives = 61/129 (47%), Gaps = 15/129 (11%)
Query: 7 KSDEGKYQCYVQ-NMVGERETKPALLTVHAPPSFVVRPQDQKVGLNGIA------SFQCV 59
KSDEG Y+C + GE + + ++ V+ PP+ + PQ N A +F C
Sbjct: 162 KSDEGIYRCEGRVEARGEIDFRDIIVIVNVPPA-ISMPQK---SFNATAERGEEMTFSCR 217
Query: 60 AEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGS 119
A GSP P++ W + G L+ Y E T+R + D G +VC A + AG
Sbjct: 218 ASGSPEPAISWFRNGK--LIEENEKYILKGSNTELTVR--NIINSDGGPYVCRATNKAGE 273
Query: 120 TTVRAFLQV 128
+AFLQV
Sbjct: 274 DEKQAFLQV 282
Score = 37.4 bits (85), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 50/227 (22%), Positives = 78/227 (34%), Gaps = 55/227 (24%)
Query: 56 FQCVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGT---LRIQGVQKEDAGFFVCS 112
F C A G P ++ +G +++ + + V +EG L I EDAG + C
Sbjct: 24 FTCTAIGEPESIDWYNPQGEKII-----STQRVVVQKEGVRSRLTIYNANIEDAGIYRCQ 78
Query: 113 ALSVAG----STTVRAFLQVTSVEDTPPPIVQVGPSNQTLPLHSVAFLPCQAVGSPPPHI 168
A G +T V Q + + P Q A + C+ SP P +
Sbjct: 79 ATDAKGQTQEATVVLEIYQKLTFREVVSP--------QEFKQGEDAEVVCRVSSSPAPAV 130
Query: 169 RW-YKNGNSLPPEDTRINVSSSGSLQID--------VLRDDFRAEPK------------- 206
W Y N D R + ++ +LQI + R + R E +
Sbjct: 131 SWLYHNEEVTTISDNRFAMLANNNLQILNINKSDEGIYRCEGRVEARGEIDFRDIIVIVN 190
Query: 207 ------------DTRVASGETALLECGPPKGQPEPTLHWKKNGQFID 241
+ GE C G PEP + W +NG+ I+
Sbjct: 191 VPPAISMPQKSFNATAERGEEMTFSC-RASGSPEPAISWFRNGKLIE 236
>pdb|3P3Y|A Chain A, Crystal Structure Of Neurofascin Homophilic Adhesion
Complex In Space Group P6522
pdb|3P40|A Chain A, Crystal Structure Of Neurofascin Adhesion Complex In Space
Group P3221
Length = 404
Score = 59.3 bits (142), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 65/264 (24%), Positives = 98/264 (37%), Gaps = 36/264 (13%)
Query: 10 EGKYQCYVQNMVGERETKPALLTVHAPPSFVVRPQDQKVGLNGI-ASFQCVAE-GSPLPS 67
EG+YQC+ +N G + L V P + D V G + QC G P P
Sbjct: 89 EGEYQCFARNKFGTALSNRIRLQVSKSPLWPKENLDPVVVQEGAPLTLQCNPPPGLPSPV 148
Query: 68 VFWTQEGSQ-VLMFPGNAYGHLHVTQEGTLRIQGVQKE---DAGFFVCSALSVAGSTTVR 123
+FW + + + GH + +Q +Q + +A F + T++
Sbjct: 149 IFWMSSSMEPITQDKRVSQGHNGDLYFSNVMLQDMQTDYSCNARFHFTHTIQQKNPFTLK 208
Query: 124 AFLQVTSVEDTPPPIVQVGPSNQTLPLHSV-AFLPCQAVGSPPPHIRWYKNGNSLPPEDT 182
E TP + G ++ + L + L C A G P P I WYK G LP +
Sbjct: 209 VLTTRGVAERTPSFMYPQGTASSQMVLRGMDLLLECIASGVPTPDIAWYKKGGDLPSDKA 268
Query: 183 RI----------NVSSSGSLQIDVLRDD------------------FRAEPKDTRVASGE 214
+ NVS S + L + + EPK+ +A GE
Sbjct: 269 KFENFNKALRITNVSEEDSGEYFCLASNKMGSIRHTISVRVKAAPYWLDEPKNLILAPGE 328
Query: 215 TALLECGPPKGQPEPTLHWKKNGQ 238
L C G P+PT+ W NG+
Sbjct: 329 DGRLVCR-ANGNPKPTVQWMVNGE 351
Score = 50.8 bits (120), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 38/131 (29%), Positives = 55/131 (41%), Gaps = 13/131 (9%)
Query: 56 FQCVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALS 115
+C+A G P P + W ++G + P + + + LRI V +ED+G + C A +
Sbjct: 242 LECIASGVPTPDIAWYKKGGDL---PSDKAKFENFNK--ALRITNVSEEDSGEYFCLASN 296
Query: 116 VAGSTTVRAFLQVTSVEDTPPPIVQVGPSNQTLPLHSVAFLPCQAVGSPPPHIRWYKNGN 175
GS SV P P N L L C+A G+P P ++W NG
Sbjct: 297 KMGS-----IRHTISVRVKAAPYWLDEPKNLILAPGEDGRLVCRANGNPKPTVQWMVNGE 351
Query: 176 SL---PPEDTR 183
L PP R
Sbjct: 352 PLQSAPPNPNR 362
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/131 (25%), Positives = 52/131 (39%), Gaps = 6/131 (4%)
Query: 2 ITEVKKSDEGKYQCYVQNMVGE-RETKPALLTVHAPPSFVVRPQDQKVGLNGIASFQCVA 60
IT V + D G+Y C N +G R T + V A P ++ P++ + C A
Sbjct: 279 ITNVSEEDSGEYFCLASNKMGSIRHT--ISVRVKAAPYWLDEPKNLILAPGEDGRLVCRA 336
Query: 61 EGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGST 120
G+P P+V W G + P N + T+ + Q + C+ + G
Sbjct: 337 NGNPKPTVQWMVNGEPLQSAPPNPNREV---AGDTIIFRDTQISSRAVYQCNTSNEHGYL 393
Query: 121 TVRAFLQVTSV 131
AF+ V V
Sbjct: 394 LANAFVSVLDV 404
Score = 38.1 bits (87), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
Query: 206 KDTRVASGETALLECGPPKGQPEPTLHWKKNGQFIDLESSKRVSI 250
KD V + L+EC KG P P+ HW +N +F ++ RVS+
Sbjct: 25 KDHIVDPRDNILIECEA-KGNPAPSFHWTRNSRFFNIAKDPRVSM 68
Score = 33.5 bits (75), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 49/191 (25%), Positives = 80/191 (41%), Gaps = 30/191 (15%)
Query: 26 TKPALLTVHAPPSFVVRPQDQKVGLNGIASFQCVAEGSPLPSVFWTQEGSQVLMFPGNAY 85
T+P +T + +V P+D + +C A+G+P PS WT+ S+ +
Sbjct: 14 TQPPTITKQSAKDHIVDPRDNIL-------IECEAKGNPAPSFHWTR-NSRFFNIAKDPR 65
Query: 86 GHLHVTQEGTLRIQ----GVQKEDAGFFVCSALSVAGST-TVRAFLQVTSV-----EDTP 135
+ + GTL I G +E G + C A + G+ + R LQV+ E+
Sbjct: 66 VSMR-RRSGTLVIDFRSGGRPEEYEGEYQCFARNKFGTALSNRIRLQVSKSPLWPKENLD 124
Query: 136 PPIVQVGPSNQTLPLHSVAFLPCQ-AVGSPPPHIRWYKNGNSLPPEDTRINVSSSGSLQI 194
P +VQ G PL L C G P P I W + +D R++ +G L
Sbjct: 125 PVVVQEG-----APLT----LQCNPPPGLPSPVIFWMSSSMEPITQDKRVSQGHNGDLYF 175
Query: 195 -DVLRDDFRAE 204
+V+ D + +
Sbjct: 176 SNVMLQDMQTD 186
>pdb|1CS6|A Chain A, N-terminal Fragment Of Axonin-1 From Chicken
Length = 382
Score = 58.9 bits (141), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 38/127 (29%), Positives = 60/127 (47%), Gaps = 7/127 (5%)
Query: 2 ITEVKKSDEGKYQCYVQNMVGERETKPALLTVHAPPSFVVRPQDQKVGLNGIASFQCVAE 61
I V DEG Y+C +N+ G R+T + +HA P ++ D + + + CVA
Sbjct: 261 IQNVDFEDEGTYECEAENIKG-RDTYQGRIIIHAQPDWLDVITDTEADIGSDLRWSCVAS 319
Query: 62 GSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTT 121
G P P+V W ++G P + + V+ G LR + ED+G + C A + G+
Sbjct: 320 GKPRPAVRWLRDGQ-----PLASQNRIEVSG-GELRFSKLVLEDSGMYQCVAENKHGTVY 373
Query: 122 VRAFLQV 128
A L V
Sbjct: 374 ASAELTV 380
Score = 54.7 bits (130), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 52/208 (25%), Positives = 89/208 (42%), Gaps = 28/208 (13%)
Query: 2 ITEVKKSDEGKYQCY----VQNMVGERETKPALLTV-------HAPPSFVVRPQDQKVGL 50
I + + SD G Y C+ + + +K + L++ +AP P D
Sbjct: 162 IAKTEASDLGNYSCFATSHIDFITKSVFSKFSQLSLAAEDARQYAPSIKAKFPADTYALT 221
Query: 51 NGIASFQCVAEGSPLPSVFWTQ-EGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFF 109
+ + +C A G+P+P + W + +GSQ + ++ E L IQ V ED G +
Sbjct: 222 GQMVTLECFAFGNPVPQIKWRKLDGSQTSKW---------LSSEPLLHIQNVDFEDEGTY 272
Query: 110 VCSALSVAGSTTVRAFLQVTSVEDTPPPIVQVGPSNQTLPLHSVAFLPCQAVGSPPPHIR 169
C A ++ G T + + + + D I ++ + S C A G P P +R
Sbjct: 273 ECEAENIKGRDTYQGRIIIHAQPDWLDVI-----TDTEADIGSDLRWSCVASGKPRPAVR 327
Query: 170 WYKNGNSLPPEDTRINVSSSGSLQIDVL 197
W ++G L ++ RI V S G L+ L
Sbjct: 328 WLRDGQPLASQN-RIEV-SGGELRFSKL 353
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 71/284 (25%), Positives = 99/284 (34%), Gaps = 43/284 (15%)
Query: 5 VKKSDEGKYQCYVQNMVGERETKPALLTVHAPPSFVVRPQD-QKVGLNGIASFQCVAEGS 63
VK D G YQC N G ++ A L F +D K+ F C S
Sbjct: 69 VKAKDAGSYQCVATNARGTVVSREASLRFGFLQEFSAEERDPVKITEGWGVMFTC----S 124
Query: 64 PLPSVFWTQEGSQVLMFPGN--AYGHLHVTQ-EGTLRIQGVQKEDAGFFVCSALSVAGST 120
P P + FP A G V+Q G L I + D G + C A S
Sbjct: 125 PPPHYPALSYRWLLNEFPNFIPADGRRFVSQTTGNLYIAKTEASDLGNYSCFATSHIDFI 184
Query: 121 TVRAFLQVTSVEDTPPPIVQVGPS-NQTLPLHSVAF------LPCQAVGSPPPHIRWYKN 173
T F + + + Q PS P + A L C A G+P P I+W K
Sbjct: 185 TKSVFSKFSQLSLAAEDARQYAPSIKAKFPADTYALTGQMVTLECFAFGNPVPQIKWRKL 244
Query: 174 GNS-----LPPEDT----RINVSSSGSLQIDVL----RDDFR------AEPK------DT 208
S L E ++ G+ + + RD ++ A+P DT
Sbjct: 245 DGSQTSKWLSSEPLLHIQNVDFEDEGTYECEAENIKGRDTYQGRIIIHAQPDWLDVITDT 304
Query: 209 RVASGETALLECGPPKGQPEPTLHWKKNGQFIDLESSKRVSILG 252
G C G+P P + W ++GQ L S R+ + G
Sbjct: 305 EADIGSDLRWSC-VASGKPRPAVRWLRDGQ--PLASQNRIEVSG 345
>pdb|1QZ1|A Chain A, Crystal Structure Of The Ig 1-2-3 Fragment Of Ncam
Length = 291
Score = 56.6 bits (135), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 36/127 (28%), Positives = 58/127 (45%), Gaps = 3/127 (2%)
Query: 5 VKKSDEGKYQCYVQNMV-GERETKPALLTVHAPPSFVVRPQ--DQKVGLNGIASFQCVAE 61
+KK+DEG Y+C + + GE K + V+ PP+ R + L + C A+
Sbjct: 162 IKKTDEGTYRCEGRILARGEINFKDIQVIVNVPPTVQARQSIVNATANLGQSVTLVCDAD 221
Query: 62 GSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTT 121
G P P++ WT++G + + H+ L I+ V K D +VC A + AG
Sbjct: 222 GFPEPTMSWTKDGEPIENEEEDDEKHIFSDDSSELTIRNVDKNDEAEYVCIAENKAGEQD 281
Query: 122 VRAFLQV 128
L+V
Sbjct: 282 ASIHLKV 288
Score = 54.3 bits (129), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 54/231 (23%), Positives = 89/231 (38%), Gaps = 21/231 (9%)
Query: 9 DEGKYQCYVQNMVGERETKPALLTVHAPPSFVVRPQDQKVGLNGIASFQCVAEGSPLPSV 68
D G Y+C V G + + + F P Q+ A C S P++
Sbjct: 73 DAGIYKCVVTAEDGTQSEATVNVKIFQKLMFKNAPTPQEFKEGEDAVIVCDVVSSLPPTI 132
Query: 69 FWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVA-GSTTVRAFLQ 127
W +G V++ + V L+I+G++K D G + C +A G +
Sbjct: 133 IWKHKGRDVILKKDVRF---IVLSNNYLQIRGIKKTDEGTYRCEGRILARGEINFKDIQV 189
Query: 128 VTSVEDTPPPIVQVGPS--NQTLPLHSVAFLPCQAVGSPPPHIRWYKNGNSL--PPEDTR 183
+ +V PP VQ S N T L L C A G P P + W K+G + ED
Sbjct: 190 IVNV----PPTVQARQSIVNATANLGQSVTLVCDADGFPEPTMSWTKDGEPIENEEEDDE 245
Query: 184 INVSSSGSLQIDVLRDDFRAEPKDTRVASGETALLECGPPKGQPEPTLHWK 234
++ S S ++ + D E + +A + G+ + ++H K
Sbjct: 246 KHIFSDDSSELTIRNVDKNDEAEYVCIAENKA---------GEQDASIHLK 287
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 46/188 (24%), Positives = 72/188 (38%), Gaps = 49/188 (26%)
Query: 95 TLRIQGVQKEDAGFFVCSALSVAGS-----TTVRAFLQVTSVEDTPPPIVQVGPSNQTLP 149
TL I +DAG + C + G+ V+ F ++ + + P+ Q
Sbjct: 63 TLTIYNANIDDAGIYKCVVTAEDGTQSEATVNVKIFQKL---------MFKNAPTPQEFK 113
Query: 150 LHSVAFLPCQAVGSPPPHIRW-YKNGNSLPPEDTRINVSSSGSLQIDVLRDD----FRAE 204
A + C V S PP I W +K + + +D R V S+ LQI ++ +R E
Sbjct: 114 EGEDAVIVCDVVSSLPPTIIWKHKGRDVILKKDVRFIVLSNNYLQIRGIKKTDEGTYRCE 173
Query: 205 P----------KDTRVAS-------------------GETALLECGPPKGQPEPTLHWKK 235
KD +V G++ L C G PEPT+ W K
Sbjct: 174 GRILARGEINFKDIQVIVNVPPTVQARQSIVNATANLGQSVTLVCDA-DGFPEPTMSWTK 232
Query: 236 NGQFIDLE 243
+G+ I+ E
Sbjct: 233 DGEPIENE 240
Score = 36.6 bits (83), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 35/157 (22%), Positives = 54/157 (34%), Gaps = 37/157 (23%)
Query: 139 VQVGPSNQTLPLHSVAFLPCQAVG-SPPPHIRWYK-NGNSLPPEDTRI------------ 184
V + PS + + F CQ G + I W+ NG L P RI
Sbjct: 5 VDIVPSQGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDDDSSTL 64
Query: 185 -----NVSSSGSLQIDVLRDD-----------------FRAEPKDTRVASGETALLECGP 222
N+ +G + V +D F+ P GE A++ C
Sbjct: 65 TIYNANIDDAGIYKCVVTAEDGTQSEATVNVKIFQKLMFKNAPTPQEFKEGEDAVIVCDV 124
Query: 223 PKGQPEPTLHWKKNGQFIDLESSKRVSILGDPWFDSR 259
P PT+ WK G+ + L+ R +L + + R
Sbjct: 125 VSSLP-PTIIWKHKGRDVILKKDVRFIVLSNNYLQIR 160
>pdb|3GRW|A Chain A, Fgfr3 In Complex With A Fab
Length = 241
Score = 55.1 bits (131), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 43/135 (31%), Positives = 68/135 (50%), Gaps = 13/135 (9%)
Query: 56 FQCVAEGSPLPSVFWTQEGSQVLMFPG-NAYGHLHVT-QEGTLRIQGVQKEDAGFFVCSA 113
F+C A G+P PS+ W + G + F G + G + + Q+ +L ++ V D G + C
Sbjct: 35 FRCPAAGNPTPSISWLKNGRE---FRGEHRIGGIKLRHQQWSLVMESVVPSDRGNYTCVV 91
Query: 114 LSVAGSTTVRAFLQVTSVEDTPP-PIVQVG-PSNQTLPLHSVAFLPCQAVGSPPPHIRWY 171
+ GS +R + +E +P PI+Q G P+NQT L S C+ PHI+W
Sbjct: 92 ENKFGS--IRQTYTLDVLERSPHRPILQAGLPANQTAVLGSDVEFHCKVYSDAQPHIQWL 149
Query: 172 K----NGNSLPPEDT 182
K NG+ + P+ T
Sbjct: 150 KHVEVNGSKVGPDGT 164
Score = 35.4 bits (80), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 33/142 (23%), Positives = 56/142 (39%), Gaps = 14/142 (9%)
Query: 1 MITEVKKSDEGKYQCYVQNMVGE-RETKPALLTVHAPPSFVVR---PQDQKVGLNGIASF 56
++ V SD G Y C V+N G R+T + +P +++ P +Q L F
Sbjct: 75 VMESVVPSDRGNYTCVVENKFGSIRQTYTLDVLERSPHRPILQAGLPANQTAVLGSDVEF 134
Query: 57 QCVAEGSPLPSVFWTQE----GSQV------LMFPGNAYGHLHVTQEGTLRIQGVQKEDA 106
C P + W + GS+V + ++ V + LR+ V + D
Sbjct: 135 HCKVYSDAQPHIQWLKHVEVNGSKVGPDGTPYVTVLKSWISESVEADVRLRLANVSERDG 194
Query: 107 GFFVCSALSVAGSTTVRAFLQV 128
G ++C A + G +L V
Sbjct: 195 GEYLCRATNFIGVAEKAFWLSV 216
Score = 27.7 bits (60), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 12/34 (35%), Positives = 15/34 (44%)
Query: 147 TLPLHSVAFLPCQAVGSPPPHIRWYKNGNSLPPE 180
+P + C A G+P P I W KNG E
Sbjct: 26 AVPAANTVRFRCPAAGNPTPSISWLKNGREFRGE 59
>pdb|2XY1|A Chain A, Crystal Structure Of Ncam2 Ig3-4
Length = 192
Score = 54.7 bits (130), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 39/118 (33%), Positives = 54/118 (45%), Gaps = 10/118 (8%)
Query: 55 SFQCVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSAL 114
+F C A GSP P++ W + G L+ Y E T+R + D G +VC A
Sbjct: 23 TFSCRASGSPEPAISWFRNGK--LIEENEKYILKGSNTELTVR--NIINSDGGPYVCRAT 78
Query: 115 SVAGSTTVRAFLQVTSVEDTPPPIVQVGPSNQTLPLHSVAFLPCQAVGSPPPHIRWYK 172
+ AG +AFLQV P I+Q+ N+T + L C A G P P I W +
Sbjct: 79 NKAGEDEKQAFLQVF----VQPHIIQL--KNETTYENGQVTLVCDAEGEPIPEITWKR 130
Score = 51.6 bits (122), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 38/132 (28%), Positives = 59/132 (44%), Gaps = 7/132 (5%)
Query: 2 ITEVKKSDEGKYQCYVQNMVGERETKPALLTVHAPPSFVVRPQDQKVGLNGIASFQCVAE 61
+ + SD G Y C N GE E K A L V P +++ +++ NG + C AE
Sbjct: 62 VRNIINSDGGPYVCRATNKAGEDE-KQAFLQVFVQP-HIIQLKNETTYENGQVTLVCDAE 119
Query: 62 GSPLPSVFWTQEGSQVLMFPGNAY--GHLHVT-QEG--TLRIQGVQKEDAGFFVCSALSV 116
G P+P + W + G+ G + V Q G +L I+ V+ D+G + C A S
Sbjct: 120 GEPIPEITWKRAVDGFTFTEGDKSLDGRIEVKGQHGSSSLHIKDVKLSDSGRYDCEAASR 179
Query: 117 AGSTTVRAFLQV 128
G +L +
Sbjct: 180 IGGHQKSMYLDI 191
Score = 32.0 bits (71), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 13/39 (33%), Positives = 20/39 (51%)
Query: 156 LPCQAVGSPPPHIRWYKNGNSLPPEDTRINVSSSGSLQI 194
C+A GSP P I W++NG + + I S+ L +
Sbjct: 24 FSCRASGSPEPAISWFRNGKLIEENEKYILKGSNTELTV 62
>pdb|2KKQ|A Chain A, Solution Nmr Structure Of The Ig-Like C2-Type 2 Domain Of
Human Myotilin. Northeast Structural Genomics Target
Hr3158
Length = 116
Score = 54.3 bits (129), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 44/94 (46%)
Query: 37 PSFVVRPQDQKVGLNGIASFQCVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTL 96
P F+ +PQ +KV +C P P +FW + V + T TL
Sbjct: 16 PMFIYKPQSKKVLEGDSVKLECQISAIPPPKLFWKRNNEMVQFNTDRISLYQDNTGRVTL 75
Query: 97 RIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVTS 130
I+ V K+DAG++ SA++ AG TT L VT+
Sbjct: 76 LIKDVNKKDAGWYTVSAVNEAGVTTCNTRLDVTA 109
Score = 32.3 bits (72), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 27/53 (50%), Gaps = 2/53 (3%)
Query: 201 FRAEPKDTRVASGETALLECGPPKGQPEPTLHWKKNGQFIDLESSKRVSILGD 253
F +P+ +V G++ LEC P P L WK+N + + + R+S+ D
Sbjct: 18 FIYKPQSKKVLEGDSVKLECQI-SAIPPPKLFWKRNNEMVQFNTD-RISLYQD 68
>pdb|1RY7|B Chain B, Crystal Structure Of The 3 Ig Form Of Fgfr3c In Complex
With Fgf1
Length = 334
Score = 53.9 bits (128), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 43/135 (31%), Positives = 68/135 (50%), Gaps = 13/135 (9%)
Query: 56 FQCVAEGSPLPSVFWTQEGSQVLMFPG-NAYGHLHVT-QEGTLRIQGVQKEDAGFFVCSA 113
F+C A G+P PS+ W + G + F G + G + + Q+ +L ++ V D G + C
Sbjct: 143 FRCPAAGNPTPSISWLKNGRE---FRGEHRIGGIKLRHQQWSLVMESVVPSDRGNYTCVV 199
Query: 114 LSVAGSTTVRAFLQVTSVEDTPP-PIVQVG-PSNQTLPLHSVAFLPCQAVGSPPPHIRWY 171
+ GS +R + +E +P PI+Q G P+NQT L S C+ PHI+W
Sbjct: 200 ENKFGS--IRQTYTLDVLERSPHRPILQAGLPANQTAVLGSDVEFHCKVYSDAQPHIQWL 257
Query: 172 K----NGNSLPPEDT 182
K NG+ + P+ T
Sbjct: 258 KHVEVNGSKVGPDGT 272
Score = 35.0 bits (79), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 34/148 (22%), Positives = 57/148 (38%), Gaps = 15/148 (10%)
Query: 1 MITEVKKSDEGKYQCYVQNMVGE-RETKPALLTVHAPPSFVVR---PQDQKVGLNGIASF 56
++ V SD G Y C V+N G R+T + +P +++ P +Q L F
Sbjct: 183 VMESVVPSDRGNYTCVVENKFGSIRQTYTLDVLERSPHRPILQAGLPANQTAVLGSDVEF 242
Query: 57 QCVAEGSPLPSVFWTQ-----------EGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKED 105
C P + W + +G+ + A + + L + V ED
Sbjct: 243 HCKVYSDAQPHIQWLKHVEVNGSKVGPDGTPYVTVLKTAGANTTDKELEVLSLHNVTFED 302
Query: 106 AGFFVCSALSVAGSTTVRAFLQVTSVED 133
AG + C A + G + A+L V E+
Sbjct: 303 AGEYTCLAGNSIGFSHHSAWLVVLPAEE 330
>pdb|1CVS|C Chain C, Crystal Structure Of A Dimeric Fgf2-Fgfr1 Complex
pdb|1CVS|D Chain D, Crystal Structure Of A Dimeric Fgf2-Fgfr1 Complex
pdb|1FQ9|C Chain C, Crystal Structure Of A Ternary Fgf2-Fgfr1-Heparin Complex
pdb|1FQ9|D Chain D, Crystal Structure Of A Ternary Fgf2-Fgfr1-Heparin Complex
Length = 225
Score = 53.9 bits (128), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 47/168 (27%), Positives = 79/168 (47%), Gaps = 19/168 (11%)
Query: 26 TKPALLTVHAPPSFVVRPQDQKVGLNGI-----ASFQCVAEGSPLPSVFWTQEGSQVLMF 80
TKP + V AP + P+ + L+ + F+C + G+P P++ W + G +
Sbjct: 4 TKPNRMPV-AP--YWTSPEKMEKKLHAVPAAKTVKFKCPSSGTPQPTLRWLKNGKE--FK 58
Query: 81 PGNAYGHLHVTQEG-TLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVTSVEDTPP-PI 138
P + G V ++ + V D G + C + GS + Q+ VE +P PI
Sbjct: 59 PDHRIGGYKVRYATWSIIMDSVVPSDKGNYTCIVENEYGS--INHTYQLDVVERSPHRPI 116
Query: 139 VQVG-PSNQTLPLHSVAFLPCQAVGSPPPHIRWYK----NGNSLPPED 181
+Q G P+N+T+ L S C+ P PHI+W K NG+ + P++
Sbjct: 117 LQAGLPANKTVALGSNVEFMCKVYSDPQPHIQWLKHIEVNGSKIGPDN 164
Score = 38.5 bits (88), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 36/143 (25%), Positives = 55/143 (38%), Gaps = 15/143 (10%)
Query: 1 MITEVKKSDEGKYQCYVQNMVGERETKPALLTV----HAPPSFVVRPQDQKVGLNGIASF 56
++ V SD+G Y C V+N G L V H P P ++ V L F
Sbjct: 76 IMDSVVPSDKGNYTCIVENEYGSINHTYQLDVVERSPHRPILQAGLPANKTVALGSNVEF 135
Query: 57 QCVAEGSPLPSVFWTQE----GSQV-------LMFPGNAYGHLHVTQEGTLRIQGVQKED 105
C P P + W + GS++ + A + + L ++ V ED
Sbjct: 136 MCKVYSDPQPHIQWLKHIEVNGSKIGPDNLPYVQILKTAGVNTTDKEMEVLHLRNVSFED 195
Query: 106 AGFFVCSALSVAGSTTVRAFLQV 128
AG + C A + G + A+L V
Sbjct: 196 AGEYTCLAGNSIGLSHHSAWLTV 218
Score = 30.8 bits (68), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
Query: 202 RAEPKDTRVASGETALLECGPPKGQPEPTLHWKKNGQ 238
+ E K V + +T +C P G P+PTL W KNG+
Sbjct: 20 KMEKKLHAVPAAKTVKFKC-PSSGTPQPTLRWLKNGK 55
>pdb|3OJV|C Chain C, Crystal Structure Of Fgf1 Complexed With The Ectodomain Of
Fgfr1c Exhibiting An Ordered Ligand
Specificity-Determining Betac'-Betae Loop
pdb|3OJV|D Chain D, Crystal Structure Of Fgf1 Complexed With The Ectodomain Of
Fgfr1c Exhibiting An Ordered Ligand
Specificity-Determining Betac'-Betae Loop
Length = 226
Score = 53.9 bits (128), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 47/168 (27%), Positives = 79/168 (47%), Gaps = 19/168 (11%)
Query: 26 TKPALLTVHAPPSFVVRPQDQKVGLNGI-----ASFQCVAEGSPLPSVFWTQEGSQVLMF 80
TKP + V AP + P+ + L+ + F+C + G+P P++ W + G +
Sbjct: 5 TKPNRMPV-AP--YWTSPEKMEKKLHAVPAAKTVKFKCPSSGTPQPTLRWLKNGKE--FK 59
Query: 81 PGNAYGHLHVTQEG-TLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVTSVEDTPP-PI 138
P + G V ++ + V D G + C + GS + Q+ VE +P PI
Sbjct: 60 PDHRIGGYKVRYATWSIIMDSVVPSDKGNYTCIVENEYGS--INHTYQLDVVERSPHRPI 117
Query: 139 VQVG-PSNQTLPLHSVAFLPCQAVGSPPPHIRWYK----NGNSLPPED 181
+Q G P+N+T+ L S C+ P PHI+W K NG+ + P++
Sbjct: 118 LQAGLPANKTVALGSNVEFMCKVYSDPQPHIQWLKHIEVNGSKIGPDN 165
Score = 38.5 bits (88), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 36/143 (25%), Positives = 55/143 (38%), Gaps = 15/143 (10%)
Query: 1 MITEVKKSDEGKYQCYVQNMVGERETKPALLTV----HAPPSFVVRPQDQKVGLNGIASF 56
++ V SD+G Y C V+N G L V H P P ++ V L F
Sbjct: 77 IMDSVVPSDKGNYTCIVENEYGSINHTYQLDVVERSPHRPILQAGLPANKTVALGSNVEF 136
Query: 57 QCVAEGSPLPSVFWTQE----GSQV-------LMFPGNAYGHLHVTQEGTLRIQGVQKED 105
C P P + W + GS++ + A + + L ++ V ED
Sbjct: 137 MCKVYSDPQPHIQWLKHIEVNGSKIGPDNLPYVQILKTAGVNTTDKEMEVLHLRNVSFED 196
Query: 106 AGFFVCSALSVAGSTTVRAFLQV 128
AG + C A + G + A+L V
Sbjct: 197 AGEYTCLAGNSIGLSHHSAWLTV 219
Score = 30.8 bits (68), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
Query: 202 RAEPKDTRVASGETALLECGPPKGQPEPTLHWKKNGQ 238
+ E K V + +T +C P G P+PTL W KNG+
Sbjct: 21 KMEKKLHAVPAAKTVKFKC-PSSGTPQPTLRWLKNGK 56
>pdb|1EVT|C Chain C, Crystal Structure Of Fgf1 In Complex With The
Extracellular Ligand Binding Domain Of Fgf Receptor 1
(Fgfr1)
pdb|1EVT|D Chain D, Crystal Structure Of Fgf1 In Complex With The
Extracellular Ligand Binding Domain Of Fgf Receptor 1
(Fgfr1)
Length = 225
Score = 53.5 bits (127), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 47/168 (27%), Positives = 79/168 (47%), Gaps = 19/168 (11%)
Query: 26 TKPALLTVHAPPSFVVRPQDQKVGLNGI-----ASFQCVAEGSPLPSVFWTQEGSQVLMF 80
TKP + V AP + P+ + L+ + F+C + G+P P++ W + G +
Sbjct: 4 TKPNRMPV-AP--YWTSPEKMEKKLHAVPAAKTVKFKCPSSGTPNPTLRWLKNGKE--FK 58
Query: 81 PGNAYGHLHVTQEG-TLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVTSVEDTPP-PI 138
P + G V ++ + V D G + C + GS + Q+ VE +P PI
Sbjct: 59 PDHRIGGYKVRYATWSIIMDSVVPSDKGNYTCIVENEYGS--INHTYQLDVVERSPHRPI 116
Query: 139 VQVG-PSNQTLPLHSVAFLPCQAVGSPPPHIRWYK----NGNSLPPED 181
+Q G P+N+T+ L S C+ P PHI+W K NG+ + P++
Sbjct: 117 LQAGLPANKTVALGSNVEFMCKVYSDPQPHIQWLKHIEVNGSKIGPDN 164
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 36/143 (25%), Positives = 55/143 (38%), Gaps = 15/143 (10%)
Query: 1 MITEVKKSDEGKYQCYVQNMVGERETKPALLTV----HAPPSFVVRPQDQKVGLNGIASF 56
++ V SD+G Y C V+N G L V H P P ++ V L F
Sbjct: 76 IMDSVVPSDKGNYTCIVENEYGSINHTYQLDVVERSPHRPILQAGLPANKTVALGSNVEF 135
Query: 57 QCVAEGSPLPSVFWTQE----GSQV-------LMFPGNAYGHLHVTQEGTLRIQGVQKED 105
C P P + W + GS++ + A + + L ++ V ED
Sbjct: 136 MCKVYSDPQPHIQWLKHIEVNGSKIGPDNLPYVQILKTAGVNTTDKEMEVLHLRNVSFED 195
Query: 106 AGFFVCSALSVAGSTTVRAFLQV 128
AG + C A + G + A+L V
Sbjct: 196 AGEYTCLAGNSIGLSHHSAWLTV 218
Score = 30.4 bits (67), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
Query: 202 RAEPKDTRVASGETALLECGPPKGQPEPTLHWKKNGQ 238
+ E K V + +T +C P G P PTL W KNG+
Sbjct: 20 KMEKKLHAVPAAKTVKFKC-PSSGTPNPTLRWLKNGK 55
>pdb|1BIH|A Chain A, Crystal Structure Of The Insect Immune Protein Hemolin: A
New Domain Arrangement With Implications For Homophilic
Adhesion
pdb|1BIH|B Chain B, Crystal Structure Of The Insect Immune Protein Hemolin: A
New Domain Arrangement With Implications For Homophilic
Adhesion
Length = 395
Score = 52.8 bits (125), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 37/122 (30%), Positives = 54/122 (44%), Gaps = 8/122 (6%)
Query: 9 DEGKYQCYVQNMVGERETKPALLTVHAPPSFVVRPQDQKVGLNG-IASFQCVAEGSPLPS 67
DEG Y C V N VG+ + LTV + P + +P+ V G + C G P P+
Sbjct: 281 DEGVYTCEVDNGVGKPQKHSLKLTVVSAPKYEQKPEKVIVVKQGQDVTIPCKVTGLPAPN 340
Query: 68 VFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQ 127
V W+ + + G VT G L I+GV+ D G++ C A + G +Q
Sbjct: 341 VVWSHNAKPL------SGGRATVTDSG-LVIKGVKNGDKGYYGCRATNEHGDKYFETLVQ 393
Query: 128 VT 129
V
Sbjct: 394 VN 395
Score = 32.3 bits (72), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 42/206 (20%), Positives = 71/206 (34%), Gaps = 27/206 (13%)
Query: 1 MITEVKKSDEGKYQCYVQNMVGERETKPALLTVHAP------------PSFVVRPQDQKV 48
++T+ SD KY C +N + E + P +V + K
Sbjct: 167 IVTKEDVSDIYKYVCTAKNAAVDEEVVLVEYEIKGVTKDNSGYKGEPVPQYVSKDMMAKA 226
Query: 49 GLNGIASFQCVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGF 108
G + C+ +P+ + + G V P + + T L + ED G
Sbjct: 227 G--DVTMIYCMYGSNPMGYPNYFKNGKDVNGNPEDRITRHNRTSGKRLLFKTTLPEDEGV 284
Query: 109 FVCSALSVAGSTTVRAF-LQVTSV---EDTPPPIVQVGPSNQTLPLHSVAFLPCQAVGSP 164
+ C + G + L V S E P ++ V +PC+ G P
Sbjct: 285 YTCEVDNGVGKPQKHSLKLTVVSAPKYEQKPEKVIVVKQGQDVT-------IPCKVTGLP 337
Query: 165 PPHIRWYKNGNSLPPEDTRINVSSSG 190
P++ W + N+ P R V+ SG
Sbjct: 338 APNVVW--SHNAKPLSGGRATVTDSG 361
>pdb|3V2A|R Chain R, Vegfr-2VEGF-A Complex Structure
Length = 772
Score = 52.0 bits (123), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 38/141 (26%), Positives = 62/141 (43%), Gaps = 14/141 (9%)
Query: 1 MITEVKKS---DEGKYQCYVQNM-VGERETKPALLTV--HAPPSFVVRPQDQKVGLNGIA 54
+I E+K + D+G Y C Q+ +R LTV P+ ++Q +
Sbjct: 625 LIMELKNASLQDQGDYVCLAQDRKTKKRHCVVRQLTVLERVAPTITGNLENQTTSIGESI 684
Query: 55 SFQCVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGT--LRIQGVQKEDAGFFVCS 112
C A G+P P + W ++ ++ G V ++G L I+ V+KED G + C
Sbjct: 685 EVSCTASGNPPPQIMWFKDNETLVEDSG------IVLKDGNRNLTIRRVRKEDEGLYTCQ 738
Query: 113 ALSVAGSTTVRAFLQVTSVED 133
A SV G V AF + ++
Sbjct: 739 ACSVLGCAKVEAFFIIEGAQE 759
Score = 48.5 bits (114), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 43/91 (47%), Gaps = 8/91 (8%)
Query: 95 TLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVTSVEDTPPPIVQVGPSNQTLPLHSV- 153
TL I GV + D G + C+A S + F++V P V G ++L +V
Sbjct: 291 TLTIDGVTRSDQGLYTCAASSGLMTKKNSTFVRVHE-----KPFVAFGSGMESLVEATVG 345
Query: 154 --AFLPCQAVGSPPPHIRWYKNGNSLPPEDT 182
+P + +G PPP I+WYKNG L T
Sbjct: 346 ERVRIPAKYLGYPPPEIKWYKNGIPLESNHT 376
Score = 44.3 bits (103), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 50/206 (24%), Positives = 82/206 (39%), Gaps = 27/206 (13%)
Query: 13 YQCYVQNMVGERETKPALLTVHAP--PSFVVRPQDQKVGLNGIASFQCVAEGSPLPSVFW 70
Y+C N VG E +++ H P ++P Q + S C A+ S ++ W
Sbjct: 528 YKCEAVNKVGRGE---RVISFHVTRGPEITLQPDMQPTEQESV-SLWCTADRSTFENLTW 583
Query: 71 TQEGSQVL-----------------MFPGNAYGHLHVTQE-GTLRIQGVQKEDAGFFVCS 112
+ G Q L ++ NA + T + + ++ +D G +VC
Sbjct: 584 YKLGPQPLPIHVGELPTPVCKNLDTLWKLNATMFSNSTNDILIMELKNASLQDQGDYVCL 643
Query: 113 ALSVAGSTTVRAFLQVTSVEDTPPPIVQVGPSNQTLPLHSVAFLPCQAVGSPPPHIRWYK 172
A Q+T +E P I NQT + + C A G+PPP I W+K
Sbjct: 644 AQDRKTKKRHCVVRQLTVLERVAPTITG-NLENQTTSIGESIEVSCTASGNPPPQIMWFK 702
Query: 173 NGNSLPPEDTRINVSSSGSLQIDVLR 198
+ +L ED+ I V G+ + + R
Sbjct: 703 DNETL-VEDSGI-VLKDGNRNLTIRR 726
>pdb|2V5T|A Chain A, Crystal Structure Of Ncam2 Ig2-3
Length = 189
Score = 52.0 bits (123), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 42/129 (32%), Positives = 61/129 (47%), Gaps = 15/129 (11%)
Query: 7 KSDEGKYQCYVQ-NMVGERETKPALLTVHAPPSFVVRPQDQKVGLNGIA------SFQCV 59
KSDEG Y+C + GE + + ++ V+ PP+ + PQ N A +F C
Sbjct: 66 KSDEGIYRCEGRVEARGEIDFRDIIVIVNVPPA-ISMPQK---SFNATAERGEEMTFSCR 121
Query: 60 AEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGS 119
A GSP P++ W + G L+ Y E T+R + D G +VC A + AG
Sbjct: 122 ASGSPEPAISWFRNGK--LIEENEKYILKGSNTELTVR--NIINSDGGPYVCRATNKAGE 177
Query: 120 TTVRAFLQV 128
+AFLQV
Sbjct: 178 DEKQAFLQV 186
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 43/164 (26%), Positives = 64/164 (39%), Gaps = 11/164 (6%)
Query: 40 VVRPQDQKVGLNGIASFQCVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQ 99
VV PQ+ K G + A C SP P+V W +V N + L
Sbjct: 8 VVSPQEFKQGED--AEVVCRVSSSPAPAVSWLYHNEEVTTISDNRFAMLANNNLQI---L 62
Query: 100 GVQKEDAGFFVCSA-LSVAGSTTVRAFLQVTSVEDTPPPIVQVGPS-NQTLPLHSVAFLP 157
+ K D G + C + G R + + +V PP I S N T
Sbjct: 63 NINKSDEGIYRCEGRVEARGEIDFRDIIVIVNV---PPAISMPQKSFNATAERGEEMTFS 119
Query: 158 CQAVGSPPPHIRWYKNGNSLPPEDTRINVSSSGSLQI-DVLRDD 200
C+A GSP P I W++NG + + I S+ L + +++ D
Sbjct: 120 CRASGSPEPAISWFRNGKLIEENEKYILKGSNTELTVRNIINSD 163
>pdb|2OM5|A Chain A, N-Terminal Fragment Of Human Tax1
Length = 381
Score = 51.6 bits (122), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 37/127 (29%), Positives = 55/127 (43%), Gaps = 7/127 (5%)
Query: 2 ITEVKKSDEGKYQCYVQNMVGERETKPALLTVHAPPSFVVRPQDQKVGLNGIASFQCVAE 61
I V DEG Y+C +N G R+T + V A P ++ D + + + C A
Sbjct: 260 IPSVSFEDEGTYECEAENSKG-RDTVQGRIIVQAQPEWLKVISDTEADIGSNLRWGCAAA 318
Query: 62 GSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTT 121
G P P+V W + G P + + V G LR + ED+G + C A + G+
Sbjct: 319 GKPRPTVRWLRNGE-----PLASQNRVEVLA-GDLRFSKLSLEDSGMYQCVAENKHGTIY 372
Query: 122 VRAFLQV 128
A L V
Sbjct: 373 ASAELAV 379
Score = 51.2 bits (121), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 69/289 (23%), Positives = 101/289 (34%), Gaps = 36/289 (12%)
Query: 1 MITEVKKSDEGKYQCYVQNMVGERETKPALLTVHAPPSFVVRPQDQKVGLNGIASFQCVA 60
++ K D G YQC N VG ++ A+L F +D G
Sbjct: 64 IMNPTKAQDAGVYQCLASNPVGTVVSREAILRFGFLQEFSKEERDPVKAHEGWGVMLPCN 123
Query: 61 EGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGST 120
+ P + + ++ F H G L I D G + C A S +
Sbjct: 124 PPAHYPGLSYRWLLNEFPNFIPTDGRHFVSQTTGNLYIARTNASDLGNYSCLATSHMDFS 183
Query: 121 TVRAFLQVT----SVEDT---PPPIVQVGPSNQTLPLHSVAFLPCQAVGSPPPHIRWYKN 173
T F + + EDT P I P+ + L C A G+P P I+W K
Sbjct: 184 TKSVFSKFAQLNLAAEDTRLFAPSIKARFPAETYALVGQQVTLECFAFGNPVPRIKWRKV 243
Query: 174 GNSLPPEDT---------RINVSSSGSLQIDVLRDDFR----------AEPK------DT 208
SL P+ T ++ G+ + + R A+P+ DT
Sbjct: 244 DGSLSPQWTTAEPTLQIPSVSFEDEGTYECEAENSKGRDTVQGRIIVQAQPEWLKVISDT 303
Query: 209 RVASGETALLECGPPKGQPEPTLHWKKNGQFIDLESSKRVSIL-GDPWF 256
G C G+P PT+ W +NG+ L S RV +L GD F
Sbjct: 304 EADIGSNLRWGCA-AAGKPRPTVRWLRNGE--PLASQNRVEVLAGDLRF 349
Score = 35.4 bits (80), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 40/151 (26%), Positives = 58/151 (38%), Gaps = 31/151 (20%)
Query: 58 CVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQG-VQKEDAGFFVCSALSV 116
C A SP + W G+++ + PG+ H G L I + +DAG + C A +
Sbjct: 28 CRARASPPATYRWKMNGTEMKLEPGSR----HQLVGGNLVIMNPTKAQDAGVYQCLASNP 83
Query: 117 AGSTTVR------AFLQVTSVEDTPPPIVQVGPSNQTLPLHSVAFLPCQAVGSPPPH--- 167
G+ R FLQ S E+ P G LPC +PP H
Sbjct: 84 VGTVVSREAILRFGFLQEFSKEERDPVKAHEGWG---------VMLPC----NPPAHYPG 130
Query: 168 --IRWYKNG--NSLPPEDTRINVSSSGSLQI 194
RW N N +P + ++G+L I
Sbjct: 131 LSYRWLLNEFPNFIPTDGRHFVSQTTGNLYI 161
Score = 29.3 bits (64), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 38/168 (22%), Positives = 56/168 (33%), Gaps = 37/168 (22%)
Query: 137 PIVQVGPSNQTLPLHSV---AFLPCQAVGSPPPHIRWYKNGNSLPPEDTRINVSSSGSLQ 193
P+ + P + P S L C+A SPP RW NG + E + G+L
Sbjct: 4 PVFEDQPLSVLFPEESTEEQVLLACRARASPPATYRWKMNGTEMKLEPGSRHQLVGGNLV 63
Query: 194 I---------------------------DVLR----DDFRAEPKD-TRVASGETALLECG 221
I +LR +F E +D + G +L C
Sbjct: 64 IMNPTKAQDAGVYQCLASNPVGTVVSREAILRFGFLQEFSKEERDPVKAHEGWGVMLPCN 123
Query: 222 PPKGQPEPTLHWKKNG--QFIDLESSKRVSILGDPWFDSRRSRSIFGS 267
PP P + W N FI + VS + +R + S G+
Sbjct: 124 PPAHYPGLSYRWLLNEFPNFIPTDGRHFVSQTTGNLYIARTNASDLGN 171
>pdb|2C5D|C Chain C, Structure Of A Minimal Gas6-Axl Complex
pdb|2C5D|D Chain D, Structure Of A Minimal Gas6-Axl Complex
Length = 195
Score = 51.6 bits (122), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 36/125 (28%), Positives = 60/125 (48%), Gaps = 14/125 (11%)
Query: 2 ITEVKKSDEGKYQCYVQNMVGERE--TKPALLTVHAPPSFVVRPQDQKVGLNGIASFQCV 59
IT ++ SD G+YQC V +G + ++P + + P F+ P+D+ V N + C
Sbjct: 72 ITSLQLSDTGQYQCLV--FLGHQTFVSQPGYVGLEGLPYFLEEPEDRTVAANTPFNLSCQ 129
Query: 60 AEGSPLP-SVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAG 118
A+G P P + W Q+ + PG+ + +L + G+ K + F C A + G
Sbjct: 130 AQGPPEPVDLLWLQDAVPLATAPGHG-------PQRSLHVPGLNKTSS--FSCEAHNAKG 180
Query: 119 STTVR 123
TT R
Sbjct: 181 VTTSR 185
Score = 30.4 bits (67), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 35/138 (25%), Positives = 58/138 (42%), Gaps = 15/138 (10%)
Query: 49 GLNGIASFQCVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQE--------GTLRIQG 100
GL G Q +G P P V W ++G Q+L + + + ++ LRI
Sbjct: 17 GLTGTLRCQLQVQGEP-PEVHWLRDG-QILELADSTQTQVPLGEDEQDDWIVVSQLRITS 74
Query: 101 VQKEDAGFFVCSALSVAGSTTVRAFLQVTSVEDTPPPIVQVGPSNQTLPLHSVAFLPCQA 160
+Q D G + C L G T + +E P + + P ++T+ ++ L CQA
Sbjct: 75 LQLSDTGQYQC--LVFLGHQTFVSQPGYVGLEGLPYFLEE--PEDRTVAANTPFNLSCQA 130
Query: 161 VGSPPP-HIRWYKNGNSL 177
G P P + W ++ L
Sbjct: 131 QGPPEPVDLLWLQDAVPL 148
Score = 30.0 bits (66), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
Query: 201 FRAEPKDTRVASGETALLECG-PPKGQPEPTLHWKKNGQFIDLESSKRVSI 250
F P + A G T L C +G+P P +HW ++GQ ++L S + +
Sbjct: 5 FVGNPGNITGARGLTGTLRCQLQVQGEP-PEVHWLRDGQILELADSTQTQV 54
>pdb|2EO9|A Chain A, Solution Structure Of The Fifth Ig-Like Domain From Human
Roundabout Homo1
Length = 118
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 50/95 (52%), Gaps = 4/95 (4%)
Query: 34 HAPPSFVVRPQDQKVGLNGIASFQCVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQE 93
PP P +Q V ++G CVA GSP+P++ W ++G VL+ ++ + +
Sbjct: 6 SGPPVIRQGPVNQTVAVDGTFVLSCVATGSPVPTILWRKDG--VLVSTQDS--RIKQLEN 61
Query: 94 GTLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQV 128
G L+I+ + D G + C A + +G T A+++V
Sbjct: 62 GVLQIRYAKLGDTGRYTCIASTPSGEATWSAYIEV 96
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 36/102 (35%), Positives = 48/102 (47%), Gaps = 7/102 (6%)
Query: 136 PPIVQVGPSNQTLPLHSVAFLPCQAVGSPPPHIRWYKNGNSLPPEDTRINVSSSGSLQID 195
PP+++ GP NQT+ + L C A GSP P I W K+G + +D+RI +G LQI
Sbjct: 8 PPVIRQGPVNQTVAVDGTFVLSCVATGSPVPTILWRKDGVLVSTQDSRIKQLENGVLQIR 67
Query: 196 V--LRDDFR-----AEPKDTRVASGETALLECGPPKGQPEPT 230
L D R + P S + E G P P PT
Sbjct: 68 YAKLGDTGRYTCIASTPSGEATWSAYIEVQEFGVPVQPPRPT 109
Score = 29.3 bits (64), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
Query: 201 FRAEPKDTRVASGETALLECGPPKGQPEPTLHWKKNGQFIDLESSK 246
R P + VA T +L C G P PT+ W+K+G + + S+
Sbjct: 11 IRQGPVNQTVAVDGTFVLSCVA-TGSPVPTILWRKDGVLVSTQDSR 55
>pdb|1E07|A Chain A, Model Of Human Carcinoembryonic Antigen By Homology
Modelling And Curve-Fitting To Experimental Solution
Scattering Data
Length = 642
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 64/271 (23%), Positives = 103/271 (38%), Gaps = 54/271 (19%)
Query: 2 ITEVKKSDEGKYQCYVQNMVGERETKPALLTV-HAPPSFVVRPQDQ--KVGLNGIASFQC 58
+ V ++D G Y+C +QN + + P +L V + P + P + G+N S C
Sbjct: 346 LLSVTRNDVGPYECGIQNELSVDHSDPVILNVLYGPDDPTISPSYTYYRPGVN--LSLSC 403
Query: 59 VAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAG 118
A +P W + GN H TQE L I + ++++G + C A + A
Sbjct: 404 HAASNPPAQYSW--------LIDGNIQQH---TQE--LFISNITEKNSGLYTCQANNSAS 450
Query: 119 STTVRAFLQVTSVEDTPPPIVQVGPSNQTLPLHSVAFLPCQAVGSPPPHIRWYKNGNSLP 178
+ +T + P P + S +VAF C+ ++ W+ NG SL
Sbjct: 451 GHSRTTVKTITVSAELPKPSISSNNSKPVEDKDAVAFT-CEPEAQNTTYL-WWVNGQSL- 507
Query: 179 PEDTRINVSSSG-SLQI-DVLRDDFRA------------------------------EPK 206
P R+ +S+ +L + +V R+D RA P
Sbjct: 508 PVSPRLQLSNGNRTLTLFNVTRNDARAYVCGIQNSVSANRSDPVTLDVLYGPDTPIISPP 567
Query: 207 DTRVASGETALLECGPPKGQPEPTLHWKKNG 237
D+ SG L C P P W+ NG
Sbjct: 568 DSSYLSGANLNLSCH-SASNPSPQYSWRING 597
Score = 35.0 bits (79), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 43/189 (22%), Positives = 73/189 (38%), Gaps = 17/189 (8%)
Query: 1 MITEVKKSDEGKYQCYVQNMV-GERETKPALLTVHA--PPSFVVRPQDQKVGLNGIASFQ 57
I+ + + + G Y C N G T +TV A P + + V +F
Sbjct: 429 FISNITEKNSGLYTCQANNSASGHSRTTVKTITVSAELPKPSISSNNSKPVEDKDAVAFT 488
Query: 58 CVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQ-EGTLRIQGVQKEDAGFFVCSAL-S 115
C E ++W G + + P L ++ TL + V + DA +VC S
Sbjct: 489 CEPEAQNTTYLWWVN-GQSLPVSP-----RLQLSNGNRTLTLFNVTRNDARAYVCGIQNS 542
Query: 116 VAGSTTVRAFLQVTSVEDTPPPIVQVGPSNQTLPLHSVAFLPCQAVGSPPPHIRWYKNGN 175
V+ + + L V DTP + P + + + L C + +P P W NG
Sbjct: 543 VSANRSDPVTLDVLYGPDTP----IISPPDSSYLSGANLNLSCHSASNPSPQYSWRING- 597
Query: 176 SLPPEDTRI 184
+P + T++
Sbjct: 598 -IPQQHTQV 605
Score = 31.2 bits (69), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 37/182 (20%), Positives = 63/182 (34%), Gaps = 22/182 (12%)
Query: 1 MITEVKKSDEGKYQCYV--QNMVGERETKPALLTVHAPPSFVVRPQDQKVGLNGIASFQC 58
+I + ++D G Y +V ++V E T + P + + V +F C
Sbjct: 74 LIQNIIQNDTGFYTLHVIKSDLVNEEATGQFRVYPELPKPSISSNNSKPVEDKDAVAFTC 133
Query: 59 VAEGSPLPSVFWTQEGS-----QVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSA 113
E ++W S ++ + GN TL + V + D + C
Sbjct: 134 EPETQDATYLWWVNNQSLPVSPRLQLSNGNR----------TLTLFNVTRNDTASYKCET 183
Query: 114 LS-VAGSTTVRAFLQVTSVEDTPPPIVQVGPSNQTLPLHSVAFLPCQAVGSPPPHIRWYK 172
+ V+ + L V D P + P N + L C A +PP W+
Sbjct: 184 QNPVSARRSDSVILNVLYGPDAP----TISPLNTSYRSGENLNLSCHAASNPPAQYSWFV 239
Query: 173 NG 174
NG
Sbjct: 240 NG 241
>pdb|3V6B|R Chain R, Vegfr-2VEGF-E Complex Structure
Length = 424
Score = 48.5 bits (114), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 43/91 (47%), Gaps = 8/91 (8%)
Query: 95 TLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVTSVEDTPPPIVQVGPSNQTLPLHSV- 153
TL I GV + D G + C+A S + F++V P V G ++L +V
Sbjct: 161 TLTIDGVTRSDQGLYTCAASSGLMTKKNSTFVRVHE-----KPFVAFGSGMESLVEATVG 215
Query: 154 --AFLPCQAVGSPPPHIRWYKNGNSLPPEDT 182
+P + +G PPP I+WYKNG L T
Sbjct: 216 ERVRIPAKYLGYPPPEIKWYKNGIPLESNHT 246
>pdb|1KTK|E Chain E, Complex Of Streptococcal Pyrogenic Enterotoxin C (Spec)
With A Human T Cell Receptor Beta Chain (Vbeta2.1)
pdb|1KTK|F Chain F, Complex Of Streptococcal Pyrogenic Enterotoxin C (Spec)
With A Human T Cell Receptor Beta Chain (Vbeta2.1)
Length = 247
Score = 47.8 bits (112), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 45/92 (48%), Gaps = 9/92 (9%)
Query: 95 TLRIQGVQKEDAGFFVCSALSVAGSTTVRAFL----QVTSVEDT---PPPIVQVGPSNQT 147
TL + ED+ F++CSAL+ +GS+T + ++T +ED PP + PS
Sbjct: 78 TLTVTSAHPEDSSFYICSALAGSGSSTDTQYFGPGTRLTVLEDLKNFPPEVAVFEPSEAE 137
Query: 148 LPLHSVAFLPCQAVGSPPPHIR--WYKNGNSL 177
+ A L C A G P H+ W+ NG +
Sbjct: 138 ISHTQKATLVCLATGFYPDHVELSWWVNGKEV 169
>pdb|3OJ2|C Chain C, Crystal Structure Of Fgf1 Complexed With The Ectodomain Of
Fgfr2b Harboring The A172f Pfeiffer Syndrome Mutation
pdb|3OJ2|D Chain D, Crystal Structure Of Fgf1 Complexed With The Ectodomain Of
Fgfr2b Harboring The A172f Pfeiffer Syndrome Mutation
Length = 231
Score = 47.8 bits (112), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 41/154 (26%), Positives = 65/154 (42%), Gaps = 21/154 (13%)
Query: 33 VHAPPSFVVRPQDQKVGLNGIASFQCVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQ 92
+HA P+F F+C A G+P+P++ W + G + G+ Q
Sbjct: 28 LHAVPAF------------NTVKFRCPAGGNPMPTMRWLKNGKEFKQ-EHRIGGYKVRNQ 74
Query: 93 EGTLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVTSVEDTPP-PIVQVG-PSNQTLPL 150
+L ++ V D G + C + GS L V VE +P PI+Q G P+N + +
Sbjct: 75 HWSLIMESVVPSDKGNYTCVVENEYGSINHTYHLDV--VERSPHRPILQAGLPANASTVV 132
Query: 151 HSVAFLPCQAVGSPPPHIRWY----KNGNSLPPE 180
C+ PHI+W KNG+ P+
Sbjct: 133 GGDVEFVCKVYSDAQPHIQWIKHVEKNGSKYGPD 166
Score = 34.7 bits (78), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 35/152 (23%), Positives = 54/152 (35%), Gaps = 21/152 (13%)
Query: 1 MITEVKKSDEGKYQCYVQNMVGERETKPALLTV----HAPPSFVVRPQDQKVGLNGIASF 56
++ V SD+G Y C V+N G L V H P P + + G F
Sbjct: 79 IMESVVPSDKGNYTCVVENEYGSINHTYHLDVVERSPHRPILQAGLPANASTVVGGDVEF 138
Query: 57 QCVAEGSPLPSVFWTQEGSQVLMFPGNAYG-----HLHVTQEG--------TLRIQGVQK 103
C P + W + + G+ YG +L V + L + V +
Sbjct: 139 VCKVYSDAQPHIQWIKHVEK----NGSKYGPDGLPYLKVLKHSGINSSNAEVLALFNVTE 194
Query: 104 EDAGFFVCSALSVAGSTTVRAFLQVTSVEDTP 135
DAG ++C + G A+L V + P
Sbjct: 195 ADAGEYICKVSNYIGQANQSAWLTVLPKQQAP 226
>pdb|3S97|C Chain C, Ptprz Cntn1 Complex
pdb|3S97|D Chain D, Ptprz Cntn1 Complex
Length = 201
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 36/144 (25%), Positives = 62/144 (43%), Gaps = 27/144 (18%)
Query: 2 ITEVKKSDEGKYQCYVQNM---------------VGERETKPALLTVHAPPSFVVRPQDQ 46
I V+ SD+G Y C+V + + ER TKP P VV+ +D
Sbjct: 70 IANVEASDKGNYSCFVSSPSITKSVFSKFIPLIPIPERTTKPY------PADIVVQFKDV 123
Query: 47 KVGLNGIASFQCVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDA 106
+ + +C A G+P+P + W + ++ P + + T L+I +Q ED
Sbjct: 124 YALMGQNVTLECFALGNPVPDIRWRK-----VLEPMPSTAEIS-TSGAVLKIFNIQLEDE 177
Query: 107 GFFVCSALSVAGSTTVRAFLQVTS 130
G + C A ++ G +A + V +
Sbjct: 178 GIYECEAENIRGKDKHQARIYVQA 201
Score = 32.7 bits (73), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 29/106 (27%), Positives = 44/106 (41%), Gaps = 12/106 (11%)
Query: 94 GTLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVTSVEDTPPPIVQVGPSNQTLPLHSV 153
G L I V+ D G + C S S T F + + P + P++ + V
Sbjct: 66 GNLYIANVEASDKGNYSCFVSS--PSITKSVFSKFIPLIPIPERTTKPYPADIVVQFKDV 123
Query: 154 -------AFLPCQAVGSPPPHIRWYKNGNSLPPEDTRINVSSSGSL 192
L C A+G+P P IRW K L P + +S+SG++
Sbjct: 124 YALMGQNVTLECFALGNPVPDIRWRK---VLEPMPSTAEISTSGAV 166
>pdb|1EV2|E Chain E, Crystal Structure Of Fgf2 In Complex With The
Extracellular Ligand Binding Domain Of Fgf Receptor 2
(Fgfr2)
pdb|1EV2|F Chain F, Crystal Structure Of Fgf2 In Complex With The
Extracellular Ligand Binding Domain Of Fgf Receptor 2
(Fgfr2)
pdb|1EV2|G Chain G, Crystal Structure Of Fgf2 In Complex With The
Extracellular Ligand Binding Domain Of Fgf Receptor 2
(Fgfr2)
pdb|1EV2|H Chain H, Crystal Structure Of Fgf2 In Complex With The
Extracellular Ligand Binding Domain Of Fgf Receptor 2
(Fgfr2)
Length = 220
Score = 46.6 bits (109), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 37/131 (28%), Positives = 59/131 (45%), Gaps = 9/131 (6%)
Query: 56 FQCVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALS 115
F+C A G+P+P++ W + G + G+ Q +L ++ V D G + C +
Sbjct: 31 FRCPAGGNPMPTMRWLKNGKEFKQ-EHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVEN 89
Query: 116 VAGSTTVRAFLQVTSVEDTPP-PIVQVG-PSNQTLPLHSVAFLPCQAVGSPPPHIRWY-- 171
GS L V VE +P PI+Q G P+N + + C+ PHI+W
Sbjct: 90 EYGSINHTYHLDV--VERSPHRPILQAGLPANASTVVGGDVEFVCKVYSDAQPHIQWIKH 147
Query: 172 --KNGNSLPPE 180
KNG+ P+
Sbjct: 148 VEKNGSKYGPD 158
Score = 34.3 bits (77), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 37/147 (25%), Positives = 54/147 (36%), Gaps = 23/147 (15%)
Query: 1 MITEVKKSDEGKYQCYVQNMVGERETKPALLTV----HAPPSFVVRPQDQKVGLNGIASF 56
++ V SD+G Y C V+N G L V H P P + + G F
Sbjct: 71 IMESVVPSDKGNYTCVVENEYGSINHTYHLDVVERSPHRPILQAGLPANASTVVGGDVEF 130
Query: 57 QCVAEGSPLPSVFWTQEGSQVLMFPGNAYG-----HLHVTQEG----------TLRIQGV 101
C P + W + + G+ YG +L V + L I+ V
Sbjct: 131 VCKVYSDAQPHIQWIKHVEK----NGSKYGPDGLPYLKVLKAAGVNTTDKEIEVLYIRNV 186
Query: 102 QKEDAGFFVCSALSVAGSTTVRAFLQV 128
EDAG + C A + G + A+L V
Sbjct: 187 TFEDAGEYTCLAGNSIGISFHSAWLTV 213
Score = 27.7 bits (60), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 12/35 (34%), Positives = 16/35 (45%)
Query: 146 QTLPLHSVAFLPCQAVGSPPPHIRWYKNGNSLPPE 180
+P + C A G+P P +RW KNG E
Sbjct: 21 HAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQE 55
Score = 27.3 bits (59), Expect = 10.0, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 18/37 (48%), Gaps = 1/37 (2%)
Query: 202 RAEPKDTRVASGETALLECGPPKGQPEPTLHWKKNGQ 238
+ E + V + T C P G P PT+ W KNG+
Sbjct: 15 KMEKRLHAVPAANTVKFRC-PAGGNPMPTMRWLKNGK 50
>pdb|1E0O|B Chain B, Crystal Structure Of A Ternary Fgf1-Fgfr2-Heparin Complex
pdb|1E0O|D Chain D, Crystal Structure Of A Ternary Fgf1-Fgfr2-Heparin Complex
Length = 219
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 37/131 (28%), Positives = 59/131 (45%), Gaps = 9/131 (6%)
Query: 56 FQCVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALS 115
F+C A G+P+P++ W + G + G+ Q +L ++ V D G + C +
Sbjct: 30 FRCPAGGNPMPTMRWLKNGKEFKQ-EHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVEN 88
Query: 116 VAGSTTVRAFLQVTSVEDTPP-PIVQVG-PSNQTLPLHSVAFLPCQAVGSPPPHIRWY-- 171
GS L V VE +P PI+Q G P+N + + C+ PHI+W
Sbjct: 89 EYGSINHTYHLDV--VERSPHRPILQAGLPANASTVVGGDVEFVCKVYSDAQPHIQWIKH 146
Query: 172 --KNGNSLPPE 180
KNG+ P+
Sbjct: 147 VEKNGSKYGPD 157
Score = 34.3 bits (77), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 37/147 (25%), Positives = 54/147 (36%), Gaps = 23/147 (15%)
Query: 1 MITEVKKSDEGKYQCYVQNMVGERETKPALLTV----HAPPSFVVRPQDQKVGLNGIASF 56
++ V SD+G Y C V+N G L V H P P + + G F
Sbjct: 70 IMESVVPSDKGNYTCVVENEYGSINHTYHLDVVERSPHRPILQAGLPANASTVVGGDVEF 129
Query: 57 QCVAEGSPLPSVFWTQEGSQVLMFPGNAYG-----HLHVTQEG----------TLRIQGV 101
C P + W + + G+ YG +L V + L I+ V
Sbjct: 130 VCKVYSDAQPHIQWIKHVEK----NGSKYGPDGLPYLKVLKAAGVNTTDKEIEVLYIRNV 185
Query: 102 QKEDAGFFVCSALSVAGSTTVRAFLQV 128
EDAG + C A + G + A+L V
Sbjct: 186 TFEDAGEYTCLAGNSIGISFHSAWLTV 212
Score = 27.7 bits (60), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 12/35 (34%), Positives = 16/35 (45%)
Query: 146 QTLPLHSVAFLPCQAVGSPPPHIRWYKNGNSLPPE 180
+P + C A G+P P +RW KNG E
Sbjct: 20 HAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQE 54
>pdb|2XYC|A Chain A, Crystal Structure Of Ncam2 Igiv-Fn3i
Length = 291
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 40/155 (25%), Positives = 68/155 (43%), Gaps = 24/155 (15%)
Query: 40 VVRPQDQKVGLNGIASFQCVAEGSPLPSVFWTQEGSQVLMFPGNAY--GHLHVT-QEG-- 94
+++ +++ NG + C AEG P+P + W + G+ G + V Q G
Sbjct: 4 IIQLKNETTYENGQVTLVCDAEGEPIPEITWKRAVDGFTFTEGDKSLDGRIEVKGQHGSS 63
Query: 95 TLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVTSVEDTPPPIVQVGPSNQTL------ 148
+L I+ V+ D+G + C A S G +L +E P I SNQT+
Sbjct: 64 SLHIKDVKLSDSGRYDCEAASRIGGHQKSMYLD---IEYAPKFI-----SNQTIYYSWEG 115
Query: 149 -PLHSVAFLPCQAVGSPPPHIRWYKNGNSLPPEDT 182
P++ + C +PP I W ++ LP ++T
Sbjct: 116 NPIN----ISCDVKSNPPASIHWRRDKLVLPAKNT 146
Score = 38.5 bits (88), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 38/169 (22%), Positives = 63/169 (37%), Gaps = 10/169 (5%)
Query: 2 ITEVKKSDEGKYQCYVQNMVGERETKPALLTVHAPPSFVVRPQDQKVGLNGIASFQCVAE 61
I +VK SD G+Y C + +G + K L + P F+ + C +
Sbjct: 67 IKDVKLSDSGRYDCEAASRIGGHQ-KSMYLDIEYAPKFISNQTIYYSWEGNPINISCDVK 125
Query: 62 GSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEG---TLRIQGVQKEDAGFFVCSALSVAG 118
+P S+ W ++ L+ P +L G L I D G + C+A + G
Sbjct: 126 SNPPASIHWRRDK---LVLPAKNTTNLKTYSTGRKMILEIAPTSDNDFGRYNCTATNHIG 182
Query: 119 STTVRAFLQVTSVEDTPPPIVQVGPSNQTLPLHSVAFLPCQAVGSPPPH 167
+ L + V +P + + S T V+F + G P H
Sbjct: 183 TRFQEYILALADVPSSPYGVKIIELSQTTA---KVSFNKPDSHGGVPIH 228
>pdb|2JLL|A Chain A, Crystal Structure Of Ncam2 Igiv-Fn3ii
Length = 389
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 43/168 (25%), Positives = 73/168 (43%), Gaps = 25/168 (14%)
Query: 40 VVRPQDQKVGLNGIASFQCVAEGSPLPSVFWTQEGSQVLMFPGNAY--GHLHVT-QEG-- 94
+++ +++ NG + C AEG P+P + W + G+ G + V Q G
Sbjct: 4 IIQLKNETTYENGQVTLVCDAEGEPIPEITWKRAVDGFTFTEGDKSLDGRIEVKGQHGSS 63
Query: 95 TLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVTSVEDTPPPIVQVGPSNQTL------ 148
+L I+ V+ D+G + C A S G +L +E P I SNQT+
Sbjct: 64 SLHIKDVKLSDSGRYDCEAASRIGGHQKSMYL---DIEYAPKFI-----SNQTIYYSWEG 115
Query: 149 -PLHSVAFLPCQAVGSPPPHIRWYKNGNSLPPED-TRINVSSSGSLQI 194
P++ + C +PP I W ++ LP ++ T + S+G I
Sbjct: 116 NPIN----ISCDVKSNPPASIHWRRDKLVLPAKNTTNLKTYSTGRKMI 159
Score = 38.9 bits (89), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 31/137 (22%), Positives = 52/137 (37%), Gaps = 7/137 (5%)
Query: 2 ITEVKKSDEGKYQCYVQNMVGERETKPALLTVHAPPSFVVRPQDQKVGLNGIASFQCVAE 61
I +VK SD G+Y C + +G + K L + P F+ + C +
Sbjct: 67 IKDVKLSDSGRYDCEAASRIGGHQ-KSMYLDIEYAPKFISNQTIYYSWEGNPINISCDVK 125
Query: 62 GSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEG---TLRIQGVQKEDAGFFVCSALSVAG 118
+P S+ W ++ L+ P +L G L I D G + C+A + G
Sbjct: 126 SNPPASIHWRRDK---LVLPAKNTTNLKTYSTGRKMILEIAPTSDNDFGRYNCTATNHIG 182
Query: 119 STTVRAFLQVTSVEDTP 135
+ L + V +P
Sbjct: 183 TRFQEYILALADVPSSP 199
>pdb|3HG1|E Chain E, Germline-Governed Recognition Of A Cancer Epitope By An
Immunodominant Human T Cell Receptor
Length = 244
Score = 45.8 bits (107), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 43/171 (25%), Positives = 72/171 (42%), Gaps = 32/171 (18%)
Query: 32 TVHAPPSFVVRPQDQKVGLNGIASFQCVAEGSPLPSVFWTQE----GSQVLMF------- 80
T+H P+ +V+P + S +C EG+ P+++W ++ G Q+L +
Sbjct: 3 TIHQWPATLVQP------VGSPLSLECTVEGTSNPNLYWYRQAAGRGLQLLFYSVGIGQI 56
Query: 81 ----PGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRAFL----QVTSVE 132
P N ++ L + + D+GF++C A S G T F ++T +E
Sbjct: 57 SSEVPQNLSASRPQDRQFILSSKKLLLSDSGFYLC-AWSETGLGTGELFFGEGSRLTVLE 115
Query: 133 DT----PPPIVQVGPSNQTLPLHSVAFLPCQAVGSPPPHIR--WYKNGNSL 177
D PP + PS + A L C A G P H+ W+ NG +
Sbjct: 116 DLKNVFPPEVAVFEPSEAEISHTQKATLVCLATGFYPDHVELSWWVNGKEV 166
>pdb|1II4|E Chain E, Crystal Structure Of Ser252trp Apert Mutant Fgf Receptor 2
(Fgfr2) In Complex With Fgf2
pdb|1II4|F Chain F, Crystal Structure Of Ser252trp Apert Mutant Fgf Receptor 2
(Fgfr2) In Complex With Fgf2
pdb|1II4|G Chain G, Crystal Structure Of Ser252trp Apert Mutant Fgf Receptor 2
(Fgfr2) In Complex With Fgf2
pdb|1II4|H Chain H, Crystal Structure Of Ser252trp Apert Mutant Fgf Receptor 2
(Fgfr2) In Complex With Fgf2
Length = 220
Score = 45.4 bits (106), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 37/131 (28%), Positives = 58/131 (44%), Gaps = 9/131 (6%)
Query: 56 FQCVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALS 115
F+C A G+P+P++ W + G + G+ Q +L ++ V D G + C +
Sbjct: 31 FRCPAGGNPMPTMRWLKNGKEFKQ-EHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVEN 89
Query: 116 VAGSTTVRAFLQVTSVEDTPP-PIVQVG-PSNQTLPLHSVAFLPCQAVGSPPPHIRWY-- 171
GS L V VE P PI+Q G P+N + + C+ PHI+W
Sbjct: 90 EYGSINHTYHLDV--VERWPHRPILQAGLPANASTVVGGDVEFVCKVYSDAQPHIQWIKH 147
Query: 172 --KNGNSLPPE 180
KNG+ P+
Sbjct: 148 VEKNGSKYGPD 158
Score = 34.3 bits (77), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 37/147 (25%), Positives = 54/147 (36%), Gaps = 23/147 (15%)
Query: 1 MITEVKKSDEGKYQCYVQNMVGERETKPALLTV----HAPPSFVVRPQDQKVGLNGIASF 56
++ V SD+G Y C V+N G L V H P P + + G F
Sbjct: 71 IMESVVPSDKGNYTCVVENEYGSINHTYHLDVVERWPHRPILQAGLPANASTVVGGDVEF 130
Query: 57 QCVAEGSPLPSVFWTQEGSQVLMFPGNAYG-----HLHVTQEG----------TLRIQGV 101
C P + W + + G+ YG +L V + L I+ V
Sbjct: 131 VCKVYSDAQPHIQWIKHVEK----NGSKYGPDGLPYLKVLKAAGVNTTDKEIEVLYIRNV 186
Query: 102 QKEDAGFFVCSALSVAGSTTVRAFLQV 128
EDAG + C A + G + A+L V
Sbjct: 187 TFEDAGEYTCLAGNSIGISFHSAWLTV 213
Score = 27.7 bits (60), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 12/35 (34%), Positives = 16/35 (45%)
Query: 146 QTLPLHSVAFLPCQAVGSPPPHIRWYKNGNSLPPE 180
+P + C A G+P P +RW KNG E
Sbjct: 21 HAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQE 55
>pdb|3K0W|A Chain A, Crystal Structure Of The Tandem Ig-Like C2-Type 2 Domains
Of The Human Mucosa-Associated Lymphoid Tissue Lymphoma
Translocation Protein 1
Length = 218
Score = 45.4 bits (106), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 50/211 (23%), Positives = 75/211 (35%), Gaps = 38/211 (18%)
Query: 41 VRPQDQKVGLNGIASFQCVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQG 100
V P+ + V C A G P W + ++ GN L
Sbjct: 23 VNPESKAVLAGQFVKLCCRATGHPFVQYQWFKMNKEIP--NGNT---------SELIFNA 71
Query: 101 VQKEDAGFFVCSALSVAGSTTVRAFLQVTSVE--DTPPPI-------------VQVGPSN 145
V +DAGF+VC + F Q + ++ D P + V P++
Sbjct: 72 VHVKDAGFYVCRV----NNNFTFEFSQWSQLDVCDIPESFQRSVDGVSESKLQICVEPTS 127
Query: 146 QTLPLHSVAFLPCQAVGSPPPHIRWYKNGNSLPPEDTR------INVSSSGSLQIDVLRD 199
Q L S L C AVGSP PH +W+KN L E + +++ G+ V D
Sbjct: 128 QKLMPGSTLVLQCVAVGSPIPHYQWFKNELPLTHETKKLYMVPYVDLEHQGTYWCHVYND 187
Query: 200 DFRAEPKDTRVASGETALLECGPPKGQPEPT 230
+ K + E L G P + + T
Sbjct: 188 RDSQDSKKVEIIIDE--LNNLGHPDNKEQTT 216
>pdb|3OJM|B Chain B, Crystal Structure Of Fgf1 Complexed With The Ectodomain Of
Fgfr2b Harboring P253r Apert Mutation
Length = 231
Score = 44.7 bits (104), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 34/130 (26%), Positives = 55/130 (42%), Gaps = 7/130 (5%)
Query: 56 FQCVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALS 115
F+C A G+P+P++ W + G + G+ Q +L ++ V D G + C +
Sbjct: 39 FRCPAGGNPMPTMRWLKNGKEFKQ-EHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVEN 97
Query: 116 VAGSTTVRAFLQVTSVEDTPPPIVQVG-PSNQTLPLHSVAFLPCQAVGSPPPHIRWY--- 171
GS L V PI+Q G P+N + + C+ PHI+W
Sbjct: 98 EYGSINHTYHLDVVE-RSRHRPILQAGLPANASTVVGGDVEFVCKVYSDAQPHIQWIKHV 156
Query: 172 -KNGNSLPPE 180
KNG+ P+
Sbjct: 157 EKNGSKYGPD 166
Score = 34.3 bits (77), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 35/152 (23%), Positives = 54/152 (35%), Gaps = 21/152 (13%)
Query: 1 MITEVKKSDEGKYQCYVQNMVGERETKPALLTV----HAPPSFVVRPQDQKVGLNGIASF 56
++ V SD+G Y C V+N G L V H P P + + G F
Sbjct: 79 IMESVVPSDKGNYTCVVENEYGSINHTYHLDVVERSRHRPILQAGLPANASTVVGGDVEF 138
Query: 57 QCVAEGSPLPSVFWTQEGSQVLMFPGNAYG-----HLHVTQEG--------TLRIQGVQK 103
C P + W + + G+ YG +L V + L + V +
Sbjct: 139 VCKVYSDAQPHIQWIKHVEK----NGSKYGPDGLPYLKVLKHSGINSSNAEVLALFNVTE 194
Query: 104 EDAGFFVCSALSVAGSTTVRAFLQVTSVEDTP 135
DAG ++C + G A+L V + P
Sbjct: 195 ADAGEYICKVSNYIGQANQSAWLTVLPKQQAP 226
Score = 28.1 bits (61), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 12/35 (34%), Positives = 16/35 (45%)
Query: 146 QTLPLHSVAFLPCQAVGSPPPHIRWYKNGNSLPPE 180
+P + C A G+P P +RW KNG E
Sbjct: 29 HAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQE 63
>pdb|2FDB|P Chain P, Crystal Structure Of Fibroblast Growth Factor (Fgf)8b In
Complex With Fgf Receptor (Fgfr) 2c
pdb|2FDB|R Chain R, Crystal Structure Of Fibroblast Growth Factor (Fgf)8b In
Complex With Fgf Receptor (Fgfr) 2c
Length = 220
Score = 44.7 bits (104), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 34/130 (26%), Positives = 55/130 (42%), Gaps = 7/130 (5%)
Query: 56 FQCVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALS 115
F+C A G+P+P++ W + G + G+ Q +L ++ V D G + C +
Sbjct: 29 FRCPAGGNPMPTMRWLKNGKEFKQ-EHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVEN 87
Query: 116 VAGSTTVRAFLQVTSVEDTPPPIVQVG-PSNQTLPLHSVAFLPCQAVGSPPPHIRWY--- 171
GS L V PI+Q G P+N + + C+ PHI+W
Sbjct: 88 EYGSINHTYHLDVVE-RSRHRPILQAGLPANASTVVGGDVEFVCKVYSDAQPHIQWIKHV 146
Query: 172 -KNGNSLPPE 180
KNG+ P+
Sbjct: 147 EKNGSKYGPD 156
Score = 34.3 bits (77), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 37/147 (25%), Positives = 54/147 (36%), Gaps = 23/147 (15%)
Query: 1 MITEVKKSDEGKYQCYVQNMVGERETKPALLTV----HAPPSFVVRPQDQKVGLNGIASF 56
++ V SD+G Y C V+N G L V H P P + + G F
Sbjct: 69 IMESVVPSDKGNYTCVVENEYGSINHTYHLDVVERSRHRPILQAGLPANASTVVGGDVEF 128
Query: 57 QCVAEGSPLPSVFWTQEGSQVLMFPGNAYG-----HLHVTQEG----------TLRIQGV 101
C P + W + + G+ YG +L V + L I+ V
Sbjct: 129 VCKVYSDAQPHIQWIKHVEK----NGSKYGPDGLPYLKVLKAAGVNTTDKEIEVLYIRNV 184
Query: 102 QKEDAGFFVCSALSVAGSTTVRAFLQV 128
EDAG + C A + G + A+L V
Sbjct: 185 TFEDAGEYTCLAGNSIGISFHSAWLTV 211
Score = 28.1 bits (61), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 12/35 (34%), Positives = 16/35 (45%)
Query: 146 QTLPLHSVAFLPCQAVGSPPPHIRWYKNGNSLPPE 180
+P + C A G+P P +RW KNG E
Sbjct: 19 HAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQE 53
>pdb|1IIL|E Chain E, Crystal Structure Of Pro253arg Apert Mutant Fgf Receptor 2
(Fgfr2) In Complex With Fgf2
pdb|1IIL|F Chain F, Crystal Structure Of Pro253arg Apert Mutant Fgf Receptor 2
(Fgfr2) In Complex With Fgf2
pdb|1IIL|G Chain G, Crystal Structure Of Pro253arg Apert Mutant Fgf Receptor 2
(Fgfr2) In Complex With Fgf2
pdb|1IIL|H Chain H, Crystal Structure Of Pro253arg Apert Mutant Fgf Receptor 2
(Fgfr2) In Complex With Fgf2
Length = 220
Score = 44.7 bits (104), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 34/130 (26%), Positives = 55/130 (42%), Gaps = 7/130 (5%)
Query: 56 FQCVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALS 115
F+C A G+P+P++ W + G + G+ Q +L ++ V D G + C +
Sbjct: 31 FRCPAGGNPMPTMRWLKNGKEFKQ-EHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVEN 89
Query: 116 VAGSTTVRAFLQVTSVEDTPPPIVQVG-PSNQTLPLHSVAFLPCQAVGSPPPHIRWY--- 171
GS L V PI+Q G P+N + + C+ PHI+W
Sbjct: 90 EYGSINHTYHLDVVE-RSRHRPILQAGLPANASTVVGGDVEFVCKVYSDAQPHIQWIKHV 148
Query: 172 -KNGNSLPPE 180
KNG+ P+
Sbjct: 149 EKNGSKYGPD 158
Score = 34.3 bits (77), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 37/147 (25%), Positives = 54/147 (36%), Gaps = 23/147 (15%)
Query: 1 MITEVKKSDEGKYQCYVQNMVGERETKPALLTV----HAPPSFVVRPQDQKVGLNGIASF 56
++ V SD+G Y C V+N G L V H P P + + G F
Sbjct: 71 IMESVVPSDKGNYTCVVENEYGSINHTYHLDVVERSRHRPILQAGLPANASTVVGGDVEF 130
Query: 57 QCVAEGSPLPSVFWTQEGSQVLMFPGNAYG-----HLHVTQEG----------TLRIQGV 101
C P + W + + G+ YG +L V + L I+ V
Sbjct: 131 VCKVYSDAQPHIQWIKHVEK----NGSKYGPDGLPYLKVLKAAGVNTTDKEIEVLYIRNV 186
Query: 102 QKEDAGFFVCSALSVAGSTTVRAFLQV 128
EDAG + C A + G + A+L V
Sbjct: 187 TFEDAGEYTCLAGNSIGISFHSAWLTV 213
Score = 28.1 bits (61), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 12/35 (34%), Positives = 16/35 (45%)
Query: 146 QTLPLHSVAFLPCQAVGSPPPHIRWYKNGNSLPPE 180
+P + C A G+P P +RW KNG E
Sbjct: 21 HAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQE 55
Score = 27.3 bits (59), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 18/37 (48%), Gaps = 1/37 (2%)
Query: 202 RAEPKDTRVASGETALLECGPPKGQPEPTLHWKKNGQ 238
+ E + V + T C P G P PT+ W KNG+
Sbjct: 15 KMEKRLHAVPAANTVKFRC-PAGGNPMPTMRWLKNGK 50
>pdb|1RHF|A Chain A, Crystal Structure Of Human Tyro3-D1d2
pdb|1RHF|B Chain B, Crystal Structure Of Human Tyro3-D1d2
Length = 182
Score = 44.7 bits (104), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 38/123 (30%), Positives = 55/123 (44%), Gaps = 12/123 (9%)
Query: 2 ITEVKKSDEGKYQCYVQNMVGERE-TKPALLTVHAPPSFVVRPQDQKVGLNGIASFQCVA 60
+ V++SD G+Y C V++ GE E ++P LTV P F V P+D V N C A
Sbjct: 64 LKSVERSDAGRYWCQVEDG-GETEISQPVWLTVEGVPFFTVEPKDLAVPPNAPFQLSCEA 122
Query: 61 EGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGST 120
G P P G+ + P + L+VT GV + F C A ++ G
Sbjct: 123 VGPPEPVTIVWWRGTTKIGGPAPSPSVLNVT--------GVTQSTX--FSCEAHNLKGLA 172
Query: 121 TVR 123
+ R
Sbjct: 173 SSR 175
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 45/170 (26%), Positives = 72/170 (42%), Gaps = 28/170 (16%)
Query: 29 ALLTVHAPPSFVVRPQDQKVGLNGIASFQCVAEGSPLPSVFWTQEGSQV-----LMFPGN 83
A L + P + Q Q V LN C EG P + W ++G+ V L P +
Sbjct: 1 AGLKLMGAPVKLTVSQGQPVKLN------CSVEGXEEPDIQWVKDGAVVQNLDQLYIPVS 54
Query: 84 AYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVR--AFLQVTSVEDTPPPIVQV 141
+ G L ++ V++ DAG + C + G T + +L V V P V
Sbjct: 55 EQHWI-----GFLSLKSVERSDAGRYWCQ-VEDGGETEISQPVWLTVEGV-----PFFTV 103
Query: 142 GPSNQTLPLHSVAFLPCQAVGSPPP-HIRWYKNGNSL---PPEDTRINVS 187
P + +P ++ L C+AVG P P I W++ + P + +NV+
Sbjct: 104 EPKDLAVPPNAPFQLSCEAVGPPEPVTIVWWRGTTKIGGPAPSPSVLNVT 153
>pdb|3KVQ|A Chain A, Crystal Structure Of Vegfr2 Extracellular Domain D7
Length = 108
Score = 44.7 bits (104), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 29/107 (27%), Positives = 47/107 (43%), Gaps = 10/107 (9%)
Query: 31 LTV--HAPPSFVVRPQDQKVGLNGIASFQCVAEGSPLPSVFWTQEGSQVLMFPGNAYGHL 88
LTV P+ ++Q + C A G+P P + W ++ ++ G
Sbjct: 3 LTVLERVAPTITGNLENQTTSIGESIEVSCTASGNPPPQIMWFKDNETLVEDSG------ 56
Query: 89 HVTQEGT--LRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVTSVED 133
V ++G L I+ V+KED G + C A SV G V AF + ++
Sbjct: 57 IVLKDGNRNLTIRRVRKEDEGLYTCQACSVLGCAKVEAFFIIEGAQE 103
Score = 37.4 bits (85), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 36/72 (50%), Gaps = 3/72 (4%)
Query: 127 QVTSVEDTPPPIVQVGPSNQTLPLHSVAFLPCQAVGSPPPHIRWYKNGNSLPPEDTRINV 186
Q+T +E P I NQT + + C A G+PPP I W+K+ +L ED+ I V
Sbjct: 2 QLTVLERVAPTITG-NLENQTTSIGESIEVSCTASGNPPPQIMWFKDNETL-VEDSGI-V 58
Query: 187 SSSGSLQIDVLR 198
G+ + + R
Sbjct: 59 LKDGNRNLTIRR 70
>pdb|2ID5|A Chain A, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|B Chain B, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|C Chain C, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|D Chain D, Crystal Structure Of The Lingo-1 Ectodomain
Length = 477
Score = 44.3 bits (103), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 39/75 (52%), Gaps = 2/75 (2%)
Query: 56 FQCVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALS 115
F C A+G P P++ W ++ N G L V +GTL ++ Q +D G ++C A +
Sbjct: 405 FVCRADGDPPPAILWLSPRKHLVSAKSN--GRLTVFPDGTLEVRYAQVQDNGTYLCIAAN 462
Query: 116 VAGSTTVRAFLQVTS 130
G+ ++ A L V S
Sbjct: 463 AGGNDSMPAHLHVRS 477
Score = 29.3 bits (64), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 7/44 (15%)
Query: 151 HSVAFLPCQAVGSPPPHIRWYKNGNSLPPEDTRINVSSSGSLQI 194
H+V F+ C+A G PPP I W L P ++ S+G L +
Sbjct: 401 HTVQFV-CRADGDPPPAILW------LSPRKHLVSAKSNGRLTV 437
>pdb|3PUC|A Chain A, Atomic Resolution Structure Of Titin Domain M7
Length = 99
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/99 (25%), Positives = 41/99 (41%), Gaps = 2/99 (2%)
Query: 33 VHAPPSFVVRPQDQKVGLNGIASFQCVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQ 92
+ + P V QD V + +A F A G P P+ WT++G + G Y
Sbjct: 3 ISSKPVIVTGLQDTTVSSDSVAKFAVKATGEPRPTAIWTKDGKAITQ--GGKYKLSEDKG 60
Query: 93 EGTLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVTSV 131
L I D+G + C+ + AGS + L + ++
Sbjct: 61 GFFLEIHKTDTSDSGLYTCTVKNSAGSVSSSCKLTIKAI 99
Score = 30.8 bits (68), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 13/41 (31%), Positives = 21/41 (51%)
Query: 137 PIVQVGPSNQTLPLHSVAFLPCQAVGSPPPHIRWYKNGNSL 177
P++ G + T+ SVA +A G P P W K+G ++
Sbjct: 7 PVIVTGLQDTTVSSDSVAKFAVKATGEPRPTAIWTKDGKAI 47
>pdb|2WWK|O Chain O, Crystal Structure Of The Titin M10-Obscurin Like 1 Ig F17r
Mutant Complex
Length = 109
Score = 43.5 bits (101), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 37/84 (44%), Gaps = 12/84 (14%)
Query: 35 APPSFVVRPQDQKVGLNGIASFQCVAEGSPLPSVFWTQEGSQV-----LMFPGNAYGHLH 89
+PP F+ RP+ +V A +CV G P P V W + G Q+ L FP + H
Sbjct: 13 SPPCFLRRPRPVRVVSGAEAELKCVVLGEPPPVVVWEKGGQQLAASERLSFPADGAEH-- 70
Query: 90 VTQEGTLRIQGVQKEDAGFFVCSA 113
L + DAG +VC A
Sbjct: 71 -----GLLLTAALPTDAGVYVCRA 89
Score = 33.9 bits (76), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 29/53 (54%), Gaps = 3/53 (5%)
Query: 201 FRAEPKDTRVASGETALLECGPPKGQPEPTLHWKKNGQFIDLESSKRVSILGD 253
F P+ RV SG A L+C G+P P + W+K GQ L +S+R+S D
Sbjct: 17 FLRRPRPVRVVSGAEAELKCVV-LGEPPPVVVWEKGGQ--QLAASERLSFPAD 66
>pdb|1NUN|B Chain B, Crystal Structure Analysis Of The Fgf10-fgfr2b Complex
Length = 230
Score = 43.5 bits (101), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 37/131 (28%), Positives = 56/131 (42%), Gaps = 9/131 (6%)
Query: 56 FQCVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALS 115
F+C A G+P P+ W + G + G+ Q +L + V D G + C +
Sbjct: 38 FRCPAGGNPXPTXRWLKNGKEFKQ-EHRIGGYKVRNQHWSLIXESVVPSDKGNYTCVVEN 96
Query: 116 VAGSTTVRAFLQVTSVEDTPP-PIVQVG-PSNQTLPLHSVAFLPCQAVGSPPPHIRWY-- 171
GS L V VE +P PI+Q G P+N + + C+ PHI+W
Sbjct: 97 EYGSINHTYHLDV--VERSPHRPILQAGLPANASTVVGGDVEFVCKVYSDAQPHIQWIKH 154
Query: 172 --KNGNSLPPE 180
KNG+ P+
Sbjct: 155 VEKNGSKYGPD 165
Score = 33.9 bits (76), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 34/145 (23%), Positives = 51/145 (35%), Gaps = 21/145 (14%)
Query: 8 SDEGKYQCYVQNMVGERETKPALLTV----HAPPSFVVRPQDQKVGLNGIASFQCVAEGS 63
SD+G Y C V+N G L V H P P + + G F C
Sbjct: 85 SDKGNYTCVVENEYGSINHTYHLDVVERSPHRPILQAGLPANASTVVGGDVEFVCKVYSD 144
Query: 64 PLPSVFWTQEGSQVLMFPGNAYG-----HLHVTQEG--------TLRIQGVQKEDAGFFV 110
P + W + + G+ YG +L V + L + V + DAG ++
Sbjct: 145 AQPHIQWIKHVEK----NGSKYGPDGLPYLKVLKHSGINSSNAEVLALFNVTEADAGEYI 200
Query: 111 CSALSVAGSTTVRAFLQVTSVEDTP 135
C + G A+L V + P
Sbjct: 201 CKVSNYIGQANQSAWLTVLPKQQAP 225
>pdb|1DJS|A Chain A, Ligand-binding Portion Of Fibroblast Growth Factor
Receptor 2 In Complex With Fgf1
Length = 216
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 37/131 (28%), Positives = 56/131 (42%), Gaps = 9/131 (6%)
Query: 56 FQCVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALS 115
F+C A G+P P+ W + G + G+ Q +L + V D G + C +
Sbjct: 31 FRCPAGGNPXPTXRWLKNGKEFKQ-EHRIGGYKVRNQHWSLIXESVVPSDKGNYTCVVEN 89
Query: 116 VAGSTTVRAFLQVTSVEDTPP-PIVQVG-PSNQTLPLHSVAFLPCQAVGSPPPHIRWY-- 171
GS L V VE +P PI+Q G P+N + + C+ PHI+W
Sbjct: 90 EYGSINHTYHLDV--VERSPHRPILQAGLPANASTVVGGDVEFVCKVYSDAQPHIQWIKH 147
Query: 172 --KNGNSLPPE 180
KNG+ P+
Sbjct: 148 VEKNGSKYGPD 158
Score = 33.5 bits (75), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 36/140 (25%), Positives = 51/140 (36%), Gaps = 23/140 (16%)
Query: 8 SDEGKYQCYVQNMVGERETKPALLTV----HAPPSFVVRPQDQKVGLNGIASFQCVAEGS 63
SD+G Y C V+N G L V H P P + + G F C
Sbjct: 78 SDKGNYTCVVENEYGSINHTYHLDVVERSPHRPILQAGLPANASTVVGGDVEFVCKVYSD 137
Query: 64 PLPSVFWTQEGSQVLMFPGNAYG-----HLHVTQEG----------TLRIQGVQKEDAGF 108
P + W + + G+ YG +L V + L I+ V EDAG
Sbjct: 138 AQPHIQWIKHVEK----NGSKYGPDGLPYLKVLKAAGVNTTDKEIEVLYIRNVTFEDAGE 193
Query: 109 FVCSALSVAGSTTVRAFLQV 128
+ C A + G + A+L V
Sbjct: 194 YTCLAGNSIGISFHSAWLTV 213
>pdb|3LCY|A Chain A, Titin Ig Tandem Domains A164-A165
pdb|3LCY|B Chain B, Titin Ig Tandem Domains A164-A165
pdb|3LCY|C Chain C, Titin Ig Tandem Domains A164-A165
pdb|3LCY|D Chain D, Titin Ig Tandem Domains A164-A165
Length = 197
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 38/160 (23%), Positives = 63/160 (39%), Gaps = 19/160 (11%)
Query: 37 PSFVVRPQDQKVGLNGIASFQCVAEGSPLPSVFWTQEGSQVLM---FPGNAYGHLHVTQE 93
P +D L A C G PLP + W + G +++ + ++ G H
Sbjct: 8 PGIRKEMKDVTTKLGEAAQLSCQIVGRPLPDIKWYRFGKELIQSRKYKMSSDGRTH---- 63
Query: 94 GTLRIQGVQKEDAGFFVCSALSVAG--STTVRAFLQVTSVEDTPPPIVQ--VGPSNQTLP 149
TL + ++ED G + C A + G T+ + LQ T P+ + G TL
Sbjct: 64 -TLTVMTEEQEDEGVYTCIATNEVGEVETSSKLLLQATPQFHPGYPLKEKYYGAVGSTLR 122
Query: 150 LHSVAFLPCQAVGSPPPHIRWYKNGNSLPPEDTRINVSSS 189
LH +G P P + W+ +G L I + ++
Sbjct: 123 LH------VMYIGRPVPAMTWF-HGQKLLQNSENITIENT 155
Score = 37.7 bits (86), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 40/160 (25%), Positives = 68/160 (42%), Gaps = 19/160 (11%)
Query: 147 TLPLHSVAFLPCQAVGSPPPHIRWYKNGNSLPPEDTRINVSSSGSLQ-IDVLRDDFRAEP 205
T L A L CQ VG P P I+WY+ G L + + +SS G + V+ ++ E
Sbjct: 18 TTKLGEAAQLSCQIVGRPLPDIKWYRFGKEL-IQSRKYKMSSDGRTHTLTVMTEEQEDEG 76
Query: 206 KDTRVASGE-------TALLECGPPKGQPEPTLHWKKNGQFIDLESSKRVSIL--GDP-- 254
T +A+ E + LL P+ P L K G + S+ R+ ++ G P
Sbjct: 77 VYTCIATNEVGEVETSSKLLLQATPQFHPGYPLKEKYYGA---VGSTLRLHVMYIGRPVP 133
Query: 255 ---WFDSRRSRSIFGSVLGALSDDQWKLIAKNIRNQQQHG 291
WF ++ ++ ++ L+ KN++ + G
Sbjct: 134 AMTWFHGQKLLQNSENITIENTEHYTHLVMKNVQRKTHAG 173
Score = 33.9 bits (76), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 39/131 (29%), Positives = 54/131 (41%), Gaps = 17/131 (12%)
Query: 6 KKSDEGKYQCYVQNMVGERETKPALLTVHAPPSFVVRPQDQKV--GLNGIASFQCVAEGS 63
++ DEG Y C N VGE ET LL P P +K + + G
Sbjct: 71 EQEDEGVYTCIATNEVGEVETSSKLLLQATPQFHPGYPLKEKYYGAVGSTLRLHVMYIGR 130
Query: 64 PLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGT-----LRIQGVQ-KEDAGFFVCSALSVA 117
P+P++ W G ++L N +T E T L ++ VQ K AG + +V
Sbjct: 131 PVPAMTWFH-GQKLLQNSEN------ITIENTEHYTHLVMKNVQRKTHAGKYKVQLSNVF 183
Query: 118 GSTTVRAFLQV 128
G TV A L V
Sbjct: 184 G--TVDAILDV 192
>pdb|1U2H|A Chain A, X-Ray Structure Of The N-Terminally Truncated Human Apep-1
Length = 99
Score = 42.4 bits (98), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 34/101 (33%), Positives = 46/101 (45%), Gaps = 13/101 (12%)
Query: 34 HAPPSFVVRPQDQKV--GLNGIASFQCVAEGSPLPSVFWTQEGSQVL----MFPGNAYGH 87
APP+F V DQ V G + I S + +G P P V W + V F A G
Sbjct: 3 KAPPTFKVSLMDQSVREGQDVIMSIR--VQGEPKPVVSWLRNRQPVRPDQRRFAEEAEGG 60
Query: 88 LHVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQV 128
L LRI ++ DAGF+ C A++ G+ A L+V
Sbjct: 61 LC-----RLRILAAERGDAGFYTCKAVNEYGARQCEARLEV 96
Score = 28.5 bits (62), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 13/57 (22%), Positives = 24/57 (42%)
Query: 136 PPIVQVGPSNQTLPLHSVAFLPCQAVGSPPPHIRWYKNGNSLPPEDTRINVSSSGSL 192
PP +V +Q++ + + G P P + W +N + P+ R + G L
Sbjct: 5 PPTFKVSLMDQSVREGQDVIMSIRVQGEPKPVVSWLRNRQPVRPDQRRFAEEAEGGL 61
>pdb|2V9T|A Chain A, Complex Between The Second Lrr Domain Of Slit2 And The
First Ig Domain From Robo1
Length = 117
Score = 42.4 bits (98), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 39/91 (42%), Gaps = 5/91 (5%)
Query: 36 PPSFVVRPQDQKVGLNGIASFQCVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGT 95
PP V P D V A+ C AEG P P++ W + G +V + H + G+
Sbjct: 9 PPRIVEHPSDLIVSKGEPATLNCKAEGRPTPTIEWYKGGERVETDKDDPRSHRMLLPSGS 68
Query: 96 ---LRIQGVQKE--DAGFFVCSALSVAGSTT 121
LRI +K D G +VC A + G
Sbjct: 69 LFFLRIVHGRKSRPDEGVYVCVARNYLGEAV 99
Score = 36.2 bits (82), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 20/46 (43%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
Query: 132 EDTPPPIVQVGPSNQTLPLHSVAFLPCQAVGSPPPHIRWYKNGNSL 177
ED PP IV+ PS+ + A L C+A G P P I WYK G +
Sbjct: 6 EDFPPRIVE-HPSDLIVSKGEPATLNCKAEGRPTPTIEWYKGGERV 50
Score = 32.7 bits (73), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
Query: 190 GSLQIDVLRDDFRAEPKDTRVASGETALLECGPPKGQPEPTLHWKKNGQFIDLE 243
GSL+ + P D V+ GE A L C +G+P PT+ W K G+ ++ +
Sbjct: 1 GSLRQEDFPPRIVEHPSDLIVSKGEPATLNCKA-EGRPTPTIEWYKGGERVETD 53
>pdb|2A38|A Chain A, Crystal Structure Of The N-Terminus Of Titin
pdb|2A38|B Chain B, Crystal Structure Of The N-Terminus Of Titin
pdb|2A38|C Chain C, Crystal Structure Of The N-Terminus Of Titin
Length = 194
Score = 42.0 bits (97), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 37/132 (28%), Positives = 57/132 (43%), Gaps = 10/132 (7%)
Query: 2 ITEVKKSDEGKYQCYVQNMVGERETKPALLTVH--APPSFVVRPQDQKVGLNGIASFQCV 59
I V K++ G+Y N G+ + LL APP+FV R Q V Q
Sbjct: 67 IPAVTKANSGRYSLKATNGSGQATSTAELLVKAETAPPNFVQRLQSMTVRQGSQVRLQVR 126
Query: 60 AEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEG---TLRIQGVQKEDAGFFVCSALSV 116
G P P V + ++G+++ + ++QEG +L I ED+G + +A +
Sbjct: 127 VTGIPTPVVKFYRDGAEI-----QSSLDFQISQEGDLYSLLIAEAYPEDSGTYSVNATNS 181
Query: 117 AGSTTVRAFLQV 128
G T A L V
Sbjct: 182 VGRATSTAELLV 193
Score = 38.1 bits (87), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 44/151 (29%), Positives = 66/151 (43%), Gaps = 11/151 (7%)
Query: 31 LTVHAPPSFVVRPQDQKVGLNG-IASFQCVAEGSPLPSVFWTQEGSQVL---MFPGNAYG 86
+T AP +P V L G A+F+ G P+P V W ++G QV+ PG
Sbjct: 1 MTTQAPT--FTQPLQSVVVLEGSTATFEAHISGFPVPEVSWFRDG-QVISTSTLPGVQIS 57
Query: 87 HLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVTSVEDTPPPIVQVGPSNQ 146
L I V K ++G + A + +G T A L V + E PP VQ S
Sbjct: 58 FSD--GRAKLTIPAVTKANSGRYSLKATNGSGQATSTAELLVKA-ETAPPNFVQRLQS-M 113
Query: 147 TLPLHSVAFLPCQAVGSPPPHIRWYKNGNSL 177
T+ S L + G P P +++Y++G +
Sbjct: 114 TVRQGSQVRLQVRVTGIPTPVVKFYRDGAEI 144
>pdb|1YA5|A Chain A, Crystal Structure Of The Titin Domains Z1z2 In Complex
With Telethonin
pdb|1YA5|B Chain B, Crystal Structure Of The Titin Domains Z1z2 In Complex
With Telethonin
pdb|2F8V|A Chain A, Structure Of Full Length Telethonin In Complex With The
N-Terminus Of Titin
pdb|2F8V|B Chain B, Structure Of Full Length Telethonin In Complex With The
N-Terminus Of Titin
pdb|2F8V|C Chain C, Structure Of Full Length Telethonin In Complex With The
N-Terminus Of Titin
pdb|2F8V|D Chain D, Structure Of Full Length Telethonin In Complex With The
N-Terminus Of Titin
Length = 201
Score = 42.0 bits (97), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 37/132 (28%), Positives = 57/132 (43%), Gaps = 10/132 (7%)
Query: 2 ITEVKKSDEGKYQCYVQNMVGERETKPALLTVH--APPSFVVRPQDQKVGLNGIASFQCV 59
I V K++ G+Y N G+ + LL APP+FV R Q V Q
Sbjct: 67 IPAVTKANSGRYSLKATNGSGQATSTAELLVKAETAPPNFVQRLQSMTVRQGSQVRLQVR 126
Query: 60 AEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEG---TLRIQGVQKEDAGFFVCSALSV 116
G P P V + ++G+++ + ++QEG +L I ED+G + +A +
Sbjct: 127 VTGIPTPVVKFYRDGAEI-----QSSLDFQISQEGDLYSLLIAEAYPEDSGTYSVNATNS 181
Query: 117 AGSTTVRAFLQV 128
G T A L V
Sbjct: 182 VGRATSTAELLV 193
Score = 38.5 bits (88), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 44/151 (29%), Positives = 66/151 (43%), Gaps = 11/151 (7%)
Query: 31 LTVHAPPSFVVRPQDQKVGLNG-IASFQCVAEGSPLPSVFWTQEGSQVL---MFPGNAYG 86
+T AP +P V L G A+F+ G P+P V W ++G QV+ PG
Sbjct: 1 MTTQAPT--FTQPLQSVVVLEGSTATFEAHISGFPVPEVSWFRDG-QVISTSTLPGVQIS 57
Query: 87 HLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVTSVEDTPPPIVQVGPSNQ 146
L I V K ++G + A + +G T A L V + E PP VQ S
Sbjct: 58 FSD--GRAKLTIPAVTKANSGRYSLKATNGSGQATSTAELLVKA-ETAPPNFVQRLQS-M 113
Query: 147 TLPLHSVAFLPCQAVGSPPPHIRWYKNGNSL 177
T+ S L + G P P +++Y++G +
Sbjct: 114 TVRQGSQVRLQVRVTGIPTPVVKFYRDGAEI 144
>pdb|2DL9|A Chain A, Solution Structure Of The Ig-Like Domain Of Human Leucine-
Rich Repeat-Containing Protein 4
Length = 103
Score = 42.0 bits (97), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 42/94 (44%), Gaps = 3/94 (3%)
Query: 37 PSFVVRPQDQKVGLNGIASFQCVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTL 96
P + P+D + +A +C P+ SV W VL + + + V +GTL
Sbjct: 8 PFIMDAPRDLNISEGRMAELKC--RTPPMSSVKWLLPNGTVLSH-ASRHPRISVLNDGTL 64
Query: 97 RIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVTS 130
V D G + C +VAG++ A+L V+S
Sbjct: 65 NFSHVLLSDTGVYTCMVTNVAGNSNASAYLNVSS 98
>pdb|3O4L|E Chain E, Genetic And Structural Basis For Selection Of A Ubiquitous
T Cell Receptor Deployed In Epstein-Barr Virus
Length = 245
Score = 41.6 bits (96), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 41/90 (45%), Gaps = 7/90 (7%)
Query: 95 TLRIQGVQKEDAGFFVCSALSVAGS-TTVRAFLQVTSVEDT----PPPIVQVGPSNQTLP 149
TL + ED+ F++CSA G+ T + ++T VED PP + PS +
Sbjct: 78 TLTVTSAHPEDSSFYICSARDGTGNGYTFGSGTRLTVVEDLNKVFPPEVAVFEPSEAEIS 137
Query: 150 LHSVAFLPCQAVGSPPPHIR--WYKNGNSL 177
A L C A G P H+ W+ NG +
Sbjct: 138 HTQKATLVCLATGFYPDHVELSWWVNGKEV 167
>pdb|1KOA|A Chain A, Twitchin Kinase Fragment (C.Elegans), Autoregulated
Protein Kinase And Immunoglobulin Domains
Length = 491
Score = 41.6 bits (96), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 36/151 (23%), Positives = 60/151 (39%), Gaps = 33/151 (21%)
Query: 3 TEVKKSDEGKYQCY---------VQNMVGERETKPALLTV--------HAPPSFVVRPQD 45
T+++ S + KY + + N R+ +P ++ A P F+V+P
Sbjct: 326 TKIRDSIKTKYDAWPEPLPPLGRISNYSSLRKHRPQEYSIRDAFWDRSEAQPRFIVKPYG 385
Query: 46 QKVGLNGIASFQCVAEGSPLPSVFWTQEGSQVLM-------FPGNAYGHLHVTQEGTLRI 98
+VG A+F C S P V W ++ ++ + GN YG L I
Sbjct: 386 TEVGEGQSANFYCRVIASSPPVVTWHKDDRELKQSVKYMKRYNGNDYG---------LTI 436
Query: 99 QGVQKEDAGFFVCSALSVAGSTTVRAFLQVT 129
V+ +D G + A + G+ FL VT
Sbjct: 437 NRVKGDDKGEYTVRAKNSYGTKEEIVFLNVT 467
>pdb|3ZYO|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
And Immunoglobulin Domain Of Netrin-G Ligand-3
Length = 411
Score = 41.2 bits (95), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 31/93 (33%), Positives = 42/93 (45%), Gaps = 4/93 (4%)
Query: 37 PSFVVRPQDQKVGLNGIASFQCVAEGSPLPSVFW-TQEGSQVLMFPGNAYGHLHVTQEGT 95
P V P D V A +C G+ + SV W T G+ LM G+ + V +GT
Sbjct: 313 PVIVEPPTDLNVTEGMAAELKC-RTGTSMTSVNWLTPNGT--LMTHGSYRVRISVLHDGT 369
Query: 96 LRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQV 128
L V +D G + C + AG+TT A L V
Sbjct: 370 LNFTNVTVQDTGQYTCMVTNSAGNTTASATLNV 402
>pdb|3UTO|A Chain A, Twitchin Kinase Region From C.Elegans
(Fn31-Nl-Kin-Crd-Ig26)
pdb|3UTO|B Chain B, Twitchin Kinase Region From C.Elegans
(Fn31-Nl-Kin-Crd-Ig26)
Length = 573
Score = 41.2 bits (95), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 36/151 (23%), Positives = 60/151 (39%), Gaps = 33/151 (21%)
Query: 3 TEVKKSDEGKYQCY---------VQNMVGERETKPALLTV--------HAPPSFVVRPQD 45
T+++ S + KY + + N R+ +P ++ A P F+V+P
Sbjct: 432 TKIRDSIKTKYDAWPEPLPPLGRISNYSSLRKHRPQEYSIRDAFWDRSEAQPRFIVKPYG 491
Query: 46 QKVGLNGIASFQCVAEGSPLPSVFWTQEGSQVLM-------FPGNAYGHLHVTQEGTLRI 98
+VG A+F C S P V W ++ ++ + GN YG L I
Sbjct: 492 TEVGEGQSANFYCRVIASSPPVVTWHKDDRELKQSVKYMKRYNGNDYG---------LTI 542
Query: 99 QGVQKEDAGFFVCSALSVAGSTTVRAFLQVT 129
V+ +D G + A + G+ FL VT
Sbjct: 543 NRVKGDDKGEYTVRAKNSYGTKEEIVFLNVT 573
>pdb|3ZYJ|A Chain A, Netring1 In Complex With Ngl1
pdb|3ZYJ|C Chain C, Netring1 In Complex With Ngl1
Length = 440
Score = 41.2 bits (95), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 31/93 (33%), Positives = 38/93 (40%), Gaps = 2/93 (2%)
Query: 37 PSFVVRPQDQKVGLNGIASFQCVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTL 96
P V P D V A +C A S L SV W V M G + V +GTL
Sbjct: 342 PVIVEPPADLNVTEGMAAELKCRASTS-LTSVSWITPNGTV-MTHGAYKVRIAVLSDGTL 399
Query: 97 RIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVT 129
V +D G + C + G+TT A L VT
Sbjct: 400 NFTNVTVQDTGMYTCMVSNSVGNTTASATLNVT 432
>pdb|1YMM|E Chain E, TcrHLA-Dr2bMBP-Peptide Complex
Length = 249
Score = 40.8 bits (94), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 39/94 (41%), Gaps = 10/94 (10%)
Query: 94 GTLRIQGVQKEDAGFFVCSALSVAGSTTVRAFL----QVTSVEDT----PPPIVQVGPSN 145
TL + ED+ F++CSA + F ++T +ED PP + PS
Sbjct: 77 STLTVTSAHPEDSSFYICSARDLTSGANNEQFFGPGTRLTVLEDLKNVFPPEVAVFEPSE 136
Query: 146 QTLPLHSVAFLPCQAVGSPPPHIR--WYKNGNSL 177
+ A L C A G P H+ W+ NG +
Sbjct: 137 AEISHTQKATLVCLATGFYPDHVELSWWVNGKEV 170
>pdb|1FHG|A Chain A, High Resolution Refinement Of Telokin
Length = 154
Score = 40.8 bits (94), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 28/100 (28%), Positives = 43/100 (43%), Gaps = 5/100 (5%)
Query: 34 HAPPSFVVRPQDQKVGLNGIASFQCVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQE 93
H P F D +V A F C EG P P V W ++ + V + + + +E
Sbjct: 39 HVKPYFTKTILDMEVVEGSAARFDCKVEGYPDPEVMWFKDDNPV---KESRHFQIDYDEE 95
Query: 94 G--TLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVTSV 131
G +L I V +D + C A++ G T A L V ++
Sbjct: 96 GNCSLTISEVCGDDDAKYTCKAVNSLGEATCTAELLVETM 135
>pdb|2WBJ|D Chain D, Tcr Complex
pdb|2WBJ|H Chain H, Tcr Complex
Length = 279
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 38/93 (40%), Gaps = 10/93 (10%)
Query: 95 TLRIQGVQKEDAGFFVCSALSVAGSTTVRAFL----QVTSVEDT----PPPIVQVGPSNQ 146
TL + ED+ F++CSA + F ++T ED PP + PS
Sbjct: 101 TLTVTSAHPEDSSFYICSARDLTSGANNEQFFGPGTRLTVTEDLKNVFPPEVAVFEPSEA 160
Query: 147 TLPLHSVAFLPCQAVGSPPPHIR--WYKNGNSL 177
+ A L C A G P H+ W+ NG +
Sbjct: 161 EISHTQKATLVCLATGFYPDHVELSWWVNGKEV 193
>pdb|1TLK|A Chain A, X-Ray Structure Determination Of Telokin, The C-Terminal
Domain Of Myosin Light Chain Kinase, At 2.8 Angstroms
Resolution
Length = 154
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/100 (28%), Positives = 42/100 (42%), Gaps = 5/100 (5%)
Query: 34 HAPPSFVVRPQDQKVGLNGIASFQCVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQE 93
H P F D V A F C EG P P V W ++ + V + + + +E
Sbjct: 39 HVKPYFTKTILDMDVVEGSAARFDCKVEGYPDPEVMWFKDDNPV---KESRHFQIDYDEE 95
Query: 94 G--TLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVTSV 131
G +L I V +D + C A++ G T A L V ++
Sbjct: 96 GNCSLTISEVCGDDDAKYTCKAVNSLGEATCTAELLVETM 135
>pdb|3ZYI|A Chain A, Netring2 In Complex With Ngl2
Length = 452
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 43/96 (44%), Gaps = 3/96 (3%)
Query: 35 APPSFVVRPQDQKVGLNGIASFQCVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEG 94
+ P + P+D + +A +C P+ SV W VL + + + V +G
Sbjct: 351 SAPFIMDAPRDLNISEGRMAELKC--RTPPMSSVKWLLPNGTVLSH-ASRHPRISVLNDG 407
Query: 95 TLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVTS 130
TL V D G + C +VAG++ A+L V++
Sbjct: 408 TLNFSHVLLSDTGVYTCMVTNVAGNSNASAYLNVST 443
>pdb|2DM3|A Chain A, Solution Structure Of The Second Ig Domain Of Human
Palladin
Length = 110
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/101 (30%), Positives = 44/101 (43%), Gaps = 5/101 (4%)
Query: 37 PSFVVRPQDQKVGLNGIASFQCVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEG-- 94
P F+ P D V + C G P P + W +G V P +A+ L V + G
Sbjct: 10 PHFLQAPGDLTVQEGKLCRMDCKVSGLPTPDLSWQLDGKPVR--PDSAHKML-VRENGVH 66
Query: 95 TLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVTSVEDTP 135
+L I+ V DAG + C A + AG + L V + E P
Sbjct: 67 SLIIEPVTSRDAGIYTCIATNRAGQNSFSLELVVAAKESGP 107
>pdb|3KNB|B Chain B, Crystal Structure Of The Titin C-Terminus In Complex With
Obscurin- Like 1
Length = 107
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 36/84 (42%), Gaps = 12/84 (14%)
Query: 35 APPSFVVRPQDQKVGLNGIASFQCVAEGSPLPSVFWTQEGSQV-----LMFPGNAYGHLH 89
+PP F+ P+ +V A +CV G P P V W + G Q+ L FP + H
Sbjct: 12 SPPCFLRFPRPVRVVSGAEAELKCVVLGEPPPVVVWEKGGQQLAASERLSFPADGAEH-- 69
Query: 90 VTQEGTLRIQGVQKEDAGFFVCSA 113
L + DAG +VC A
Sbjct: 70 -----GLLLTAALPTDAGVYVCRA 88
Score = 33.1 bits (74), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 29/53 (54%), Gaps = 3/53 (5%)
Query: 201 FRAEPKDTRVASGETALLECGPPKGQPEPTLHWKKNGQFIDLESSKRVSILGD 253
F P+ RV SG A L+C G+P P + W+K GQ L +S+R+S D
Sbjct: 16 FLRFPRPVRVVSGAEAELKCVV-LGEPPPVVVWEKGGQ--QLAASERLSFPAD 65
>pdb|3OF6|A Chain A, Human Pre-T Cell Receptor Crystal Structure
pdb|3OF6|B Chain B, Human Pre-T Cell Receptor Crystal Structure
pdb|3OF6|C Chain C, Human Pre-T Cell Receptor Crystal Structure
Length = 255
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 41/90 (45%), Gaps = 7/90 (7%)
Query: 95 TLRIQGVQKEDAGFFVC-SALSVAGSTTVRAFLQVTSVEDT----PPPIVQVGPSNQTLP 149
TL+IQ Q+ED+ ++C S+L A ++T ED PP + PS +
Sbjct: 79 TLKIQRTQQEDSAVYLCASSLGQAYEQYFGPGTRLTVTEDLKNVFPPEVAVFEPSEAEIS 138
Query: 150 LHSVAFLPCQAVGSPPPHIR--WYKNGNSL 177
A L C A G P H+ W+ NG +
Sbjct: 139 HTQKATLVCLATGFYPDHVELSWWVNGKEV 168
>pdb|2WP3|O Chain O, Crystal Structure Of The Titin M10-Obscurin Like 1 Ig
Complex
pdb|2WWM|C Chain C, Crystal Structure Of The Titin M10-Obscurin Like 1 Ig
Complex In Space Group P1
pdb|2WWM|O Chain O, Crystal Structure Of The Titin M10-Obscurin Like 1 Ig
Complex In Space Group P1
Length = 109
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 36/84 (42%), Gaps = 12/84 (14%)
Query: 35 APPSFVVRPQDQKVGLNGIASFQCVAEGSPLPSVFWTQEGSQV-----LMFPGNAYGHLH 89
+PP F+ P+ +V A +CV G P P V W + G Q+ L FP + H
Sbjct: 13 SPPCFLRFPRPVRVVSGAEAELKCVVLGEPPPVVVWEKGGQQLAASERLSFPADGAEH-- 70
Query: 90 VTQEGTLRIQGVQKEDAGFFVCSA 113
L + DAG +VC A
Sbjct: 71 -----GLLLTAALPTDAGVYVCRA 89
Score = 32.7 bits (73), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 29/53 (54%), Gaps = 3/53 (5%)
Query: 201 FRAEPKDTRVASGETALLECGPPKGQPEPTLHWKKNGQFIDLESSKRVSILGD 253
F P+ RV SG A L+C G+P P + W+K GQ L +S+R+S D
Sbjct: 17 FLRFPRPVRVVSGAEAELKCVV-LGEPPPVVVWEKGGQ--QLAASERLSFPAD 66
>pdb|1MI5|E Chain E, The Crystal Structure Of Lc13 Tcr In Complex With
Hlab8-Ebv Peptide Complex
pdb|3KPR|E Chain E, Crystal Structure Of The Lc13 Tcr In Complex With Hla
B4405 Bound To Eeylkawtf A Mimotope
pdb|3KPR|J Chain J, Crystal Structure Of The Lc13 Tcr In Complex With Hla
B4405 Bound To Eeylkawtf A Mimotope
pdb|3KPS|E Chain E, Crystal Structure Of The Lc13 Tcr In Complex With Hla
B4405 Bound To Eeylqafty A Self Peptide From The Abcd3
Protein
Length = 241
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 41/90 (45%), Gaps = 7/90 (7%)
Query: 95 TLRIQGVQKEDAGFFVC-SALSVAGSTTVRAFLQVTSVEDT----PPPIVQVGPSNQTLP 149
TL+IQ Q+ED+ ++C S+L A ++T ED PP + PS +
Sbjct: 74 TLKIQRTQQEDSAVYLCASSLGQAYEQYFGPGTRLTVTEDLKNVFPPEVAVFEPSEAEIS 133
Query: 150 LHSVAFLPCQAVGSPPPHIR--WYKNGNSL 177
A L C A G P H+ W+ NG +
Sbjct: 134 HTQKATLVCLATGFYPDHVELSWWVNGKEV 163
>pdb|1KGC|E Chain E, Immune Receptor
Length = 242
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 41/90 (45%), Gaps = 7/90 (7%)
Query: 95 TLRIQGVQKEDAGFFVC-SALSVAGSTTVRAFLQVTSVEDT----PPPIVQVGPSNQTLP 149
TL+IQ Q+ED+ ++C S+L A ++T ED PP + PS +
Sbjct: 75 TLKIQRTQQEDSAVYLCASSLGQAYEQYFGPGTRLTVTEDLKNVFPPEVAVFEPSEAEIS 134
Query: 150 LHSVAFLPCQAVGSPPPHIR--WYKNGNSL 177
A L C A G P H+ W+ NG +
Sbjct: 135 HTQKATLVCLATGFYPDHVELSWWVNGKEV 164
>pdb|2NTS|P Chain P, Crystal Structure Of Sek-Hvb5.1
Length = 240
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/108 (25%), Positives = 45/108 (41%), Gaps = 11/108 (10%)
Query: 80 FPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRAFL----QVTSVEDT- 134
FPG G + + ++ D+ ++C++ S+A AF ++T VED
Sbjct: 58 FPGRFSGRQFSNSRSEMNVSTLELGDSALYLCAS-SLADRVNTEAFFGQGTRLTVVEDLK 116
Query: 135 ---PPPIVQVGPSNQTLPLHSVAFLPCQAVGSPPPHIR--WYKNGNSL 177
PP + PS + A L C A G P H+ W+ NG +
Sbjct: 117 NVFPPEVAVFEPSEAEISHTQKATLVCLATGFYPDHVELSWWVNGKEV 164
>pdb|3KNB|A Chain A, Crystal Structure Of The Titin C-Terminus In Complex With
Obscurin- Like 1
pdb|3Q5O|A Chain A, Crystal Structure Of Human Titin Domain M10
pdb|3Q5O|B Chain B, Crystal Structure Of Human Titin Domain M10
Length = 100
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/99 (25%), Positives = 39/99 (39%), Gaps = 6/99 (6%)
Query: 36 PPSFVVRPQDQKVGLNGIASFQCVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEG- 94
PP P D + + + C G P P V W+ G ++ G H+
Sbjct: 5 PPKIEALPSDISIDEGKVLTVACAFTGEPTPEVTWSCGGRKI---HSQEQGRFHIENTDD 61
Query: 95 --TLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVTSV 131
TL I VQK+D G + S + GS + + + S+
Sbjct: 62 LTTLIIMDVQKQDGGLYTLSLGNEFGSDSATVNIHIRSI 100
Score = 29.3 bits (64), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 15/65 (23%), Positives = 29/65 (44%), Gaps = 1/65 (1%)
Query: 136 PPIVQVGPSNQTLPLHSVAFLPCQAVGSPPPHIRWYKNGNSL-PPEDTRINVSSSGSLQI 194
PP ++ PS+ ++ V + C G P P + W G + E R ++ ++ L
Sbjct: 5 PPKIEALPSDISIDEGKVLTVACAFTGEPTPEVTWSCGGRKIHSQEQGRFHIENTDDLTT 64
Query: 195 DVLRD 199
++ D
Sbjct: 65 LIIMD 69
>pdb|1G1C|A Chain A, I1 Domain From Titin
pdb|1G1C|B Chain B, I1 Domain From Titin
Length = 99
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 40/94 (42%), Gaps = 1/94 (1%)
Query: 37 PSFVVRPQDQKVGLNGIASFQCVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTL 96
P R Q Q VG A F+ G P P W + G ++ Y + L
Sbjct: 6 PKIFERIQSQTVGQGSDAHFRVRVVGKPDPECEWYKNGVKIER-SDRIYWYWPEDNVCEL 64
Query: 97 RIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVTS 130
I+ V ED+ + A+++AG T+ AFL V +
Sbjct: 65 VIRDVTGEDSASIMVKAINIAGETSSHAFLLVQA 98
Score = 30.0 bits (66), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 18/37 (48%)
Query: 145 NQTLPLHSVAFLPCQAVGSPPPHIRWYKNGNSLPPED 181
+QT+ S A + VG P P WYKNG + D
Sbjct: 14 SQTVGQGSDAHFRVRVVGKPDPECEWYKNGVKIERSD 50
>pdb|2WP3|T Chain T, Crystal Structure Of The Titin M10-Obscurin Like 1 Ig
Complex
pdb|2WWK|T Chain T, Crystal Structure Of The Titin M10-Obscurin Like 1 Ig F17r
Mutant Complex
pdb|2WWM|D Chain D, Crystal Structure Of The Titin M10-Obscurin Like 1 Ig
Complex In Space Group P1
pdb|2WWM|T Chain T, Crystal Structure Of The Titin M10-Obscurin Like 1 Ig
Complex In Space Group P1
pdb|2Y9R|T Chain T, Crystal Structure Of The M10 Domain Of Titin
Length = 102
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/99 (25%), Positives = 39/99 (39%), Gaps = 6/99 (6%)
Query: 36 PPSFVVRPQDQKVGLNGIASFQCVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEG- 94
PP P D + + + C G P P V W+ G ++ G H+
Sbjct: 7 PPKIEALPSDISIDEGKVLTVACAFTGEPTPEVTWSCGGRKI---HSQEQGRFHIENTDD 63
Query: 95 --TLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVTSV 131
TL I VQK+D G + S + GS + + + S+
Sbjct: 64 LTTLIIMDVQKQDGGLYTLSLGNEFGSDSATVNIHIRSI 102
Score = 29.6 bits (65), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 15/65 (23%), Positives = 29/65 (44%), Gaps = 1/65 (1%)
Query: 136 PPIVQVGPSNQTLPLHSVAFLPCQAVGSPPPHIRWYKNGNSL-PPEDTRINVSSSGSLQI 194
PP ++ PS+ ++ V + C G P P + W G + E R ++ ++ L
Sbjct: 7 PPKIEALPSDISIDEGKVLTVACAFTGEPTPEVTWSCGGRKIHSQEQGRFHIENTDDLTT 66
Query: 195 DVLRD 199
++ D
Sbjct: 67 LIIMD 71
>pdb|1ZGL|P Chain P, Crystal Structure Of 3a6 Tcr Bound To MbpHLA-Dr2a
pdb|1ZGL|R Chain R, Crystal Structure Of 3a6 Tcr Bound To MbpHLA-Dr2a
pdb|1ZGL|T Chain T, Crystal Structure Of 3a6 Tcr Bound To MbpHLA-Dr2a
pdb|1ZGL|V Chain V, Crystal Structure Of 3a6 Tcr Bound To MbpHLA-Dr2a
Length = 249
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/108 (25%), Positives = 45/108 (41%), Gaps = 11/108 (10%)
Query: 80 FPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRAFL----QVTSVEDT- 134
FPG G + + ++ D+ ++C++ S+A AF ++T VED
Sbjct: 62 FPGRFSGRQFSNSRSEMNVSTLELGDSALYLCAS-SLADRVNTEAFFGQGTRLTVVEDLK 120
Query: 135 ---PPPIVQVGPSNQTLPLHSVAFLPCQAVGSPPPHIR--WYKNGNSL 177
PP + PS + A L C A G P H+ W+ NG +
Sbjct: 121 NVFPPEVAVFEPSEAEISHTQKATLVCLATGFYPDHVELSWWVNGKEV 168
>pdb|3FFC|E Chain E, Crystal Structure Of Cf34 Tcr In Complex With Hla-B8FLR
pdb|3FFC|J Chain J, Crystal Structure Of Cf34 Tcr In Complex With Hla-B8FLR
Length = 247
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/97 (27%), Positives = 46/97 (47%), Gaps = 12/97 (12%)
Query: 93 EGTLRIQGVQKEDAGFFVCSA---LSVAGSTTVRAF---LQVTSVEDT----PPPIVQVG 142
+ TL+IQ + ED+ ++C++ + G+T + F ++T +ED PP +
Sbjct: 73 DSTLKIQPAKLEDSAVYLCASSFTWTSGGATDTQYFGPGTRLTVLEDLKNVFPPEVAVFE 132
Query: 143 PSNQTLPLHSVAFLPCQAVGSPPPHIR--WYKNGNSL 177
PS + A L C A G P H+ W+ NG +
Sbjct: 133 PSEAEISHTQKATLVCLATGFYPDHVELSWWVNGKEV 169
>pdb|2XY2|A Chain A, Crystal Structure Of Ncam2 Ig1-2
Length = 189
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 30/126 (23%), Positives = 49/126 (38%), Gaps = 8/126 (6%)
Query: 9 DEGKYQCYVQNMVGERETKPALLTVHAPPSF--VVRPQDQKVGLNGIASFQCVAEGSPLP 66
D G Y+C + G+ + +L ++ +F VV PQ+ K G + A C SP P
Sbjct: 69 DAGIYRCQATDAKGQTQEATVVLEIYQKLTFREVVSPQEFKQGED--AEVVCRVSSSPAP 126
Query: 67 SVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSA-LSVAGSTTVRAF 125
+V W +V N + L + K D G + C + G R
Sbjct: 127 AVSWLYHNEEVTTISDNRFAMLANNNLQI---LNINKSDEGIYRCEGRVEARGEIDFRDI 183
Query: 126 LQVTSV 131
+ + +V
Sbjct: 184 IVIVNV 189
Score = 33.5 bits (75), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 33/136 (24%), Positives = 49/136 (36%), Gaps = 21/136 (15%)
Query: 56 FQCVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGT---LRIQGVQKEDAGFFVCS 112
F C A G P ++ +G +++ + + V +EG L I EDAG + C
Sbjct: 22 FTCTAIGEPESIDWYNPQGEKII-----STQRVVVQKEGVRSRLTIYNANIEDAGIYRCQ 76
Query: 113 ALSVAG----STTVRAFLQVTSVEDTPPPIVQVGPSNQTLPLHSVAFLPCQAVGSPPPHI 168
A G +T V Q + + P Q A + C+ SP P +
Sbjct: 77 ATDAKGQTQEATVVLEIYQKLTFREVVSP--------QEFKQGEDAEVVCRVSSSPAPAV 128
Query: 169 RW-YKNGNSLPPEDTR 183
W Y N D R
Sbjct: 129 SWLYHNEEVTTISDNR 144
>pdb|2WV3|A Chain A, Neuroplastin-55 Binds To And Signals Through The
Fibroblast Growth Factor Receptor
Length = 190
Score = 38.5 bits (88), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 31/131 (23%), Positives = 52/131 (39%), Gaps = 6/131 (4%)
Query: 2 ITEVKKSDEGKYQCYVQNMVGERETKPALLTVHAPPSFVVRPQDQKVGLNGIASFQCVAE 61
I + + D G+Y C + + A + V A P + + A C +
Sbjct: 60 INKPRAEDSGEYHCVYHFVSAPKAN--ATIEVKAAPDITGHKRSENKNEGQDAMMYCKSV 117
Query: 62 GSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGT---LRIQGVQ-KEDAGFFVCSALSVA 117
G P P W ++ + V N+ G + + L I +Q ED G + C+A +
Sbjct: 118 GYPHPEWMWRKKENGVFEEISNSSGRFFIINKENYTELNIVNLQITEDPGEYECNATNSI 177
Query: 118 GSTTVRAFLQV 128
GS +V L+V
Sbjct: 178 GSASVSTVLRV 188
>pdb|3BFO|A Chain A, Crystal Structure Of Ig-Like C2-Type 2 Domain Of The Human
Mucosa-Associated Lymphoid Tissue Lymphoma Translocation
Protein 1
pdb|3BFO|B Chain B, Crystal Structure Of Ig-Like C2-Type 2 Domain Of The Human
Mucosa-Associated Lymphoid Tissue Lymphoma Translocation
Protein 1
pdb|3BFO|C Chain C, Crystal Structure Of Ig-Like C2-Type 2 Domain Of The Human
Mucosa-Associated Lymphoid Tissue Lymphoma Translocation
Protein 1
pdb|3BFO|D Chain D, Crystal Structure Of Ig-Like C2-Type 2 Domain Of The Human
Mucosa-Associated Lymphoid Tissue Lymphoma Translocation
Protein 1
Length = 91
Score = 38.1 bits (87), Expect = 0.005, Method: Composition-based stats.
Identities = 19/44 (43%), Positives = 25/44 (56%)
Query: 141 VGPSNQTLPLHSVAFLPCQAVGSPPPHIRWYKNGNSLPPEDTRI 184
V P++Q L S L C AVGSP PH +W+KN L E ++
Sbjct: 8 VEPTSQKLMPGSTLVLQCVAVGSPIPHYQWFKNELPLTHETKKL 51
Score = 30.8 bits (68), Expect = 0.95, Method: Composition-based stats.
Identities = 17/48 (35%), Positives = 21/48 (43%), Gaps = 7/48 (14%)
Query: 41 VRPQDQKVGLNGIASFQCVAEGSPLPSVFW-------TQEGSQVLMFP 81
V P QK+ QCVA GSP+P W T E ++ M P
Sbjct: 8 VEPTSQKLMPGSTLVLQCVAVGSPIPHYQWFKNELPLTHETKKLYMVP 55
>pdb|3PL6|D Chain D, Structure Of Autoimmune Tcr Hy.1b11 In Complex With
Hla-Dq1 And Mbp 85-99
Length = 268
Score = 38.1 bits (87), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 23/89 (25%), Positives = 41/89 (46%), Gaps = 6/89 (6%)
Query: 95 TLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVTSVEDT----PPPIVQVGPSNQTLPL 150
TL+IQ ++ D+ ++C+ ++ + ++T +ED PP + PS +
Sbjct: 101 TLKIQRTERGDSAVYLCATSALGDTQYFGPGTRLTVLEDLKNVFPPEVAVFEPSEAEISH 160
Query: 151 HSVAFLPCQAVGSPPPHIR--WYKNGNSL 177
A L C A G P H+ W+ NG +
Sbjct: 161 TQKATLVCLATGFYPDHVELSWWVNGKEV 189
>pdb|1IE5|A Chain A, Nmr Structure Of The Third Immunoglobulin Domain From The
Neural Cell Adhesion Molecule
Length = 107
Score = 38.1 bits (87), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 27/104 (25%), Positives = 44/104 (42%), Gaps = 3/104 (2%)
Query: 27 KPALLTVHAPPSFVVR--PQDQKVGLNGIASFQCVAEGSPLPSVFWTQEGSQVLMFPGNA 84
K + V+ PPS R + L+ + C A+G P P++ WT++G + N
Sbjct: 2 KDIQVIVNVPPSVRARQSTMNATANLSQSVTLACDADGFPEPTMTWTKDGEPIEQ-EDNE 60
Query: 85 YGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQV 128
+ L I+ V K D ++C A + AG L+V
Sbjct: 61 EKYSFNYDGSELIIKKVDKSDEAEYICIAENKAGEQDATIHLKV 104
Score = 31.6 bits (70), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 22/50 (44%), Gaps = 2/50 (4%)
Query: 136 PPIVQVGPS--NQTLPLHSVAFLPCQAVGSPPPHIRWYKNGNSLPPEDTR 183
PP V+ S N T L L C A G P P + W K+G + ED
Sbjct: 11 PPSVRARQSTMNATANLSQSVTLACDADGFPEPTMTWTKDGEPIEQEDNE 60
Score = 28.9 bits (63), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 20/34 (58%), Gaps = 5/34 (14%)
Query: 1 MITEVKKSDEGKYQCYVQNMVGERETKPALLTVH 34
+I +V KSDE +Y C +N GE++ T+H
Sbjct: 73 IIKKVDKSDEAEYICIAENKAGEQDA-----TIH 101
>pdb|3Q5T|A Chain A, V BetaV BETA HOMODIMERIZATION-Based Pre-Tcr Model
Suggested By Tcr Beta Crystal Structures
Length = 241
Score = 38.1 bits (87), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 42/90 (46%), Gaps = 7/90 (7%)
Query: 95 TLRIQGVQKEDAGFFVCSALSVAGSTTVRAF-LQVTSVED----TPPPIVQVGPSNQTLP 149
TL+IQ ++ D ++C++ S G+ ++T VED TPP + PS +
Sbjct: 77 TLKIQSAKQGDTATYLCASSSGVGTEVFFGKGTRLTVVEDLRNVTPPKVSLFEPSKAEIA 136
Query: 150 LHSVAFLPCQAVGSPPPHIR--WYKNGNSL 177
A L C A G P H+ W+ NG +
Sbjct: 137 NKQKATLVCLARGFFPDHVELSWWVNGKEV 166
>pdb|2ESV|E Chain E, Structure Of The Hla-E-VmaprtlilKK50.4 TCR COMPLEX
Length = 240
Score = 37.7 bits (86), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 40/89 (44%), Gaps = 6/89 (6%)
Query: 95 TLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVTSVEDT----PPPIVQVGPSNQTLPL 150
TL++Q + ED+G + C++ + ++T +ED PP + PS +
Sbjct: 74 TLKVQPAELEDSGVYFCASSQDRDTQYFGPGTRLTVLEDLKNVFPPEVAVFEPSEAEISH 133
Query: 151 HSVAFLPCQAVGSPPPHIR--WYKNGNSL 177
A L C A G P H+ W+ NG +
Sbjct: 134 TQKATLVCLATGFYPDHVELSWWVNGKEV 162
>pdb|4FRW|A Chain A, Crystal Structure Of Human Nectin-4 Extracellular Fragment
D1-D2
pdb|4FRW|B Chain B, Crystal Structure Of Human Nectin-4 Extracellular Fragment
D1-D2
pdb|4FRW|C Chain C, Crystal Structure Of Human Nectin-4 Extracellular Fragment
D1-D2
pdb|4FRW|D Chain D, Crystal Structure Of Human Nectin-4 Extracellular Fragment
D1-D2
pdb|4FRW|E Chain E, Crystal Structure Of Human Nectin-4 Extracellular Fragment
D1-D2
pdb|4FRW|F Chain F, Crystal Structure Of Human Nectin-4 Extracellular Fragment
D1-D2
Length = 218
Score = 37.7 bits (86), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 35/76 (46%), Gaps = 5/76 (6%)
Query: 1 MITEVKKSDEGKYQCYVQNMVGERETKPALLTVHAPPSFVVRPQ---DQKVGLNGIASFQ 57
++ ++DEG+Y+C V L V PP + P ++ GL AS
Sbjct: 82 LLRNAVQADEGEYECRVSTFPAGSFQARLRLRVLVPPLPSLNPGPALEEGQGLTLAAS-- 139
Query: 58 CVAEGSPLPSVFWTQE 73
C AEGSP PSV W E
Sbjct: 140 CTAEGSPAPSVTWDTE 155
>pdb|4ELK|B Chain B, Crystal Structure Of The Hy19.3 Type Ii Nkt Tcr
pdb|4ELK|D Chain D, Crystal Structure Of The Hy19.3 Type Ii Nkt Tcr
pdb|4ELM|F Chain F, Crystal Structure Of The Mouse Cd1d-lysosulfatide-hy19.3
Tcr Complex
pdb|4ELM|H Chain H, Crystal Structure Of The Mouse Cd1d-lysosulfatide-hy19.3
Tcr Complex
Length = 244
Score = 37.7 bits (86), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 43/92 (46%), Gaps = 10/92 (10%)
Query: 95 TLRIQGVQKEDAGFFVCSALSVAGSTTVRAF---LQVTSVED----TPPPIVQVGPSNQT 147
TL+IQ ED+ + C++ S G+ + F ++T +ED TPP + PS
Sbjct: 77 TLKIQPTALEDSAVYFCAS-SFWGAYAEQFFGPGTRLTVLEDLRNVTPPKVSLFEPSKAE 135
Query: 148 LPLHSVAFLPCQAVGSPPPHIR--WYKNGNSL 177
+ A L C A G P H+ W+ NG +
Sbjct: 136 ISHTQKATLVCLATGFYPDHVELSWWVNGKEV 167
>pdb|4DZB|B Chain B, Mucosal-Associated Invariant T Cell Receptor,
Valpha7.2jalpha33-Vbeta2
Length = 246
Score = 37.7 bits (86), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 42/92 (45%), Gaps = 10/92 (10%)
Query: 95 TLRIQGVQKEDAGFFVCSALSVAGSTTVRAF---LQVTSVEDT----PPPIVQVGPSNQT 147
TL + ED+ F++CSA + +G + F ++T +ED PP + PS
Sbjct: 78 TLTVTSAHPEDSSFYICSART-SGDFGEQFFGPGTRLTVLEDLKNVFPPEVAVFEPSEAE 136
Query: 148 LPLHSVAFLPCQAVGSPPPHIR--WYKNGNSL 177
+ A L C A G P H+ W+ NG +
Sbjct: 137 ISHTQKATLVCLATGFYPDHVELSWWVNGKEV 168
>pdb|3QIU|D Chain D, Crystal Structure Of The 226 Tcr In Complex With MccI-Ek
pdb|3QIW|D Chain D, Crystal Structure Of The 226 Tcr In Complex With
Mcc-P5eI-Ek
pdb|3QJH|B Chain B, The Crystal Structure Of The 5c.C7 Tcr
pdb|3QJH|D Chain D, The Crystal Structure Of The 5c.C7 Tcr
Length = 243
Score = 37.7 bits (86), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 42/172 (24%), Positives = 66/172 (38%), Gaps = 32/172 (18%)
Query: 31 LTVHAPPSFVVRPQDQKVGLNGIASFQCVAEGSPLPSVFWTQEGS--------------- 75
+ V P ++V+ Q QK A +C+ E P VFW Q+
Sbjct: 1 MKVIQTPRYLVKGQGQK------AKMRCIPEKGH-PVVFWYQQNKNNEFKFLINFQNQEV 53
Query: 76 --QVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVC-SALSVAGS-TTVRAFLQVTSV 131
Q+ M +L IQ + D+ ++C S+L+ A S T + ++ +
Sbjct: 54 LQQIDMTEKRFSAECPSNSPCSLEIQSSEAGDSALYLCASSLNNANSDYTFGSGTRLLVI 113
Query: 132 EDT----PPPIVQVGPSNQTLPLHSVAFLPCQAVGSPPPHIR--WYKNGNSL 177
ED PP + PS + A L C A G P H+ W+ NG +
Sbjct: 114 EDLKNVFPPEVAVFEPSEAEISHTQKATLVCLATGFYPDHVELSWWVNGKEV 165
>pdb|1EPF|A Chain A, Crystal Structure Of The Two N-Terminal Immunoglobulin
Domains Of The Neural Cell Adhesion Molecule (Ncam)
pdb|1EPF|B Chain B, Crystal Structure Of The Two N-Terminal Immunoglobulin
Domains Of The Neural Cell Adhesion Molecule (Ncam)
pdb|1EPF|C Chain C, Crystal Structure Of The Two N-Terminal Immunoglobulin
Domains Of The Neural Cell Adhesion Molecule (Ncam)
pdb|1EPF|D Chain D, Crystal Structure Of The Two N-Terminal Immunoglobulin
Domains Of The Neural Cell Adhesion Molecule (Ncam)
Length = 191
Score = 37.4 bits (85), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 35/157 (22%), Positives = 54/157 (34%), Gaps = 37/157 (23%)
Query: 139 VQVGPSNQTLPLHSVAFLPCQAVG-SPPPHIRWYK-NGNSLPPEDTRI------------ 184
V + PS + + F CQ G + I W+ NG L P RI
Sbjct: 5 VDIVPSQGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDDDSSTL 64
Query: 185 -----NVSSSGSLQIDVLRDD-----------------FRAEPKDTRVASGETALLECGP 222
N+ +G + V +D F+ P GE A++ C
Sbjct: 65 TIYNANIDDAGIYKCVVTAEDGTQSEATVNVKIFQKLMFKNAPTPQEFKEGEDAVIVCDV 124
Query: 223 PKGQPEPTLHWKKNGQFIDLESSKRVSILGDPWFDSR 259
P PT+ WK G+ + L+ R +L + + R
Sbjct: 125 VSSLP-PTIIWKHKGRDVILKKDVRFIVLSNNYLQIR 160
Score = 35.4 bits (80), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 29/105 (27%), Positives = 41/105 (39%), Gaps = 13/105 (12%)
Query: 95 TLRIQGVQKEDAGFFVCSALSVAGS----TTVRAFLQVTSVEDTPPPIVQVGPSNQTLPL 150
TL I +DAG + C + G+ T Q ++ P P Q
Sbjct: 63 TLTIYNANIDDAGIYKCVVTAEDGTQSEATVNVKIFQKLMFKNAPTP--------QEFKE 114
Query: 151 HSVAFLPCQAVGSPPPHIRW-YKNGNSLPPEDTRINVSSSGSLQI 194
A + C V S PP I W +K + + +D R V S+ LQI
Sbjct: 115 GEDAVIVCDVVSSLPPTIIWKHKGRDVILKKDVRFIVLSNNYLQI 159
Score = 34.3 bits (77), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 25/109 (22%), Positives = 41/109 (37%), Gaps = 3/109 (2%)
Query: 9 DEGKYQCYVQNMVGERETKPALLTVHAPPSFVVRPQDQKVGLNGIASFQCVAEGSPLPSV 68
D G Y+C V G + + + F P Q+ A C S P++
Sbjct: 73 DAGIYKCVVTAEDGTQSEATVNVKIFQKLMFKNAPTPQEFKEGEDAVIVCDVVSSLPPTI 132
Query: 69 FWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVA 117
W +G V++ V L+I+G++K D G + C +A
Sbjct: 133 IWKHKGRDVIL---KKDVRFIVLSNNYLQIRGIKKTDEGTYRCEGRILA 178
>pdb|3TO4|D Chain D, Structure Of Mouse
Valpha14vbeta2-Mousecd1d-Alpha-Galactosylceramide
Length = 253
Score = 37.0 bits (84), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 39/167 (23%), Positives = 63/167 (37%), Gaps = 33/167 (19%)
Query: 37 PSFVVRPQDQKVGLNGIASFQCVAEGSPLPSVFWTQEGSQ----------------VLMF 80
P + + P+ Q V L +C+ + S P + W Q+ Q V
Sbjct: 8 PRWRLVPRGQAVNL------RCILKNSQYPWMSWYQQDLQKQLQWLFTLRSPGDKEVKSL 61
Query: 81 PGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRAFL----QVTSVEDT-- 134
PG Y VT + LR+Q C++ + + T + + ++T +ED
Sbjct: 62 PGADYLATRVT-DTELRLQVANMSQGRTLYCTSSADHWTNTGQLYFGEGSKLTVLEDLKN 120
Query: 135 --PPPIVQVGPSNQTLPLHSVAFLPCQAVGSPPPHIR--WYKNGNSL 177
PP + PS + A L C A G P H+ W+ NG +
Sbjct: 121 VFPPEVAVFEPSEAEISHTQKATLVCLATGFYPDHVELSWWVNGKEV 167
>pdb|2WNG|A Chain A, Complete Extracellular Structure Of Human Signal
Regulatory Protein (Sirp) Alpha
Length = 327
Score = 37.0 bits (84), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 42/95 (44%), Gaps = 5/95 (5%)
Query: 95 TLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVT--SVEDTPPPIVQVGPSNQTLPLHS 152
++ I + DAG + C T T SV P V GP+ + P H+
Sbjct: 75 SISISNITPADAGTYYCVKFRKGSPDTEFKSGAGTELSVRAKPSAPVVSGPAARATPQHT 134
Query: 153 VAFLPCQAVGSPPPHI--RWYKNGNSLPPEDTRIN 185
V+F C++ G P I +W+KNGN L T ++
Sbjct: 135 VSFT-CESHGFSPRDITLKWFKNGNELSDFQTNVD 168
>pdb|4E41|E Chain E, Structural Basis For The Recognition Of Mutant Self By A
Tumor- Specific, Mhc Class Ii-Restricted T Cell Receptor
G4
pdb|4E41|J Chain J, Structural Basis For The Recognition Of Mutant Self By A
Tumor- Specific, Mhc Class Ii-Restricted T Cell Receptor
G4
pdb|4E42|B Chain B, Structural Basis For The Recognition Of Mutant Self By A
Tumor- Specific, Mhc Class Ii-Restricted T Cell Receptor
G4
pdb|4E42|D Chain D, Structural Basis For The Recognition Of Mutant Self By A
Tumor- Specific, Mhc Class Ii-Restricted T Cell Receptor
G4
Length = 239
Score = 36.6 bits (83), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 29/126 (23%), Positives = 49/126 (38%), Gaps = 8/126 (6%)
Query: 60 AEGSPLPSVFWTQEGSQVLM--FPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVA 117
A G L + W EG + FP G L + ++ ED+ ++C++ +
Sbjct: 36 ALGLGLQFLLWYDEGEERNRGNFPPRFSGRQFPNYSSELNVNALELEDSALYLCASSQIR 95
Query: 118 GSTTVRAFLQVTSVEDT----PPPIVQVGPSNQTLPLHSVAFLPCQAVGSPPPHIR--WY 171
+ ++ +ED PP + PS + A L C A G P H+ W+
Sbjct: 96 ETQYFGPGTRLLVLEDLKNVFPPEVAVFEPSEAEISHTQKATLVCLATGFYPDHVELSWW 155
Query: 172 KNGNSL 177
NG +
Sbjct: 156 VNGKEV 161
>pdb|3DX9|B Chain B, Crystal Structure Of The Dm1 Tcr At 2.75a
pdb|3DX9|D Chain D, Crystal Structure Of The Dm1 Tcr At 2.75a
pdb|3DXA|E Chain E, Crystal Structure Of The Dm1 Tcr In Complex With Hla-B4405
And Decamer Ebv Antigen
pdb|3DXA|J Chain J, Crystal Structure Of The Dm1 Tcr In Complex With Hla-B4405
And Decamer Ebv Antigen
pdb|3DXA|O Chain O, Crystal Structure Of The Dm1 Tcr In Complex With Hla-B4405
And Decamer Ebv Antigen
Length = 244
Score = 36.2 bits (82), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 41/92 (44%), Gaps = 9/92 (9%)
Query: 95 TLRIQGVQKEDAGFFVCSALSVAGSTTVRAF---LQVTSVEDT----PPPIVQVGPSNQT 147
TL IQ ++ D+ ++C++ S + F ++T +ED PP + PS
Sbjct: 75 TLEIQRTEQGDSAMYLCASRYRDDSYNEQFFGPGTRLTVLEDLKNVFPPEVAVFEPSEAE 134
Query: 148 LPLHSVAFLPCQAVGSPPPHIR--WYKNGNSL 177
+ A L C A G P H+ W+ NG +
Sbjct: 135 ISHTQKATLVCLATGFYPDHVELSWWVNGKEV 166
>pdb|4EI5|D Chain D, Crystal Structure Of Xv19 Tcr In Complex With
Cd1d-Sulfatide C24:1
pdb|4EI5|H Chain H, Crystal Structure Of Xv19 Tcr In Complex With
Cd1d-Sulfatide C24:1
pdb|4EI6|B Chain B, Structure Of Xv19 Valpha1-Vbeta16 Type-Ii Natural Killer T
Cell Receptor
pdb|4EI6|D Chain D, Structure Of Xv19 Valpha1-Vbeta16 Type-Ii Natural Killer T
Cell Receptor
Length = 245
Score = 36.2 bits (82), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 42/92 (45%), Gaps = 10/92 (10%)
Query: 95 TLRIQGVQKEDAGFFVCSALSVAGSTTVRAF---LQVTSVEDT----PPPIVQVGPSNQT 147
TL+IQ ED+ + C++ S G+ + F ++T +ED PP + PS
Sbjct: 77 TLKIQPTALEDSAVYFCAS-SFWGAYAEQFFGPGTRLTVLEDLKNVFPPEVAVFEPSEAE 135
Query: 148 LPLHSVAFLPCQAVGSPPPHIR--WYKNGNSL 177
+ A L C A G P H+ W+ NG +
Sbjct: 136 ISHTQKATLVCLATGFYPDHVELSWWVNGKEV 167
>pdb|3QIB|D Chain D, Crystal Structure Of The 2b4 Tcr In Complex With MccI-Ek
Length = 270
Score = 35.8 bits (81), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 40/173 (23%), Positives = 65/173 (37%), Gaps = 34/173 (19%)
Query: 31 LTVHAPPSFVVRPQDQKVGLNGIASFQCVAEGSPLPSVFWTQEGS--------------- 75
+ V P ++V+ Q QK A +C+ E P VFW Q+
Sbjct: 28 MKVIQTPRYLVKGQGQK------AKMRCIPEKGH-PVVFWYQQNKNNEFKFLINFQNQEV 80
Query: 76 --QVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRAF---LQVTS 130
Q+ M +L IQ + D+ ++C++ S+ S + F ++
Sbjct: 81 LQQIDMTEKRFSAECPSNSPCSLEIQSSEAGDSALYLCAS-SLNWSQDTQYFGPGTRLLV 139
Query: 131 VEDT----PPPIVQVGPSNQTLPLHSVAFLPCQAVGSPPPHIR--WYKNGNSL 177
+ED PP + PS + A L C A G P H+ W+ NG +
Sbjct: 140 LEDLKNVFPPEVAVFEPSEAEISHTQKATLVCLATGFYPDHVELSWWVNGKEV 192
>pdb|3SBW|C Chain C, Crystal Structure Of The Complex Between The Extracellular
Domains Of Mouse Pd-1 Mutant And Human Pd-L1
Length = 222
Score = 35.8 bits (81), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 34/125 (27%), Positives = 47/125 (37%), Gaps = 28/125 (22%)
Query: 2 ITEVKKSDEGKYQCYVQNMVGERETKPALLTVHAPPS------FVVRPQDQKVGLNGIAS 55
IT+VK D G Y+C + G + K + V+AP + VV P +
Sbjct: 84 ITDVKLQDAGVYRCMIS--YGGADYKRITVKVNAPYNKINQRILVVDP------VTSEHE 135
Query: 56 FQCVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALS 115
C AEG P V WT QVL G ++E+ F V S L
Sbjct: 136 LTCQAEGYPKAEVIWTSSDHQVL--------------SGKTTTTNSKREEKLFNVTSTLR 181
Query: 116 VAGST 120
+ +T
Sbjct: 182 INTTT 186
>pdb|3QQN|A Chain A, The Retinal Specific Cd147 Ig0 Domain: From Molecular
Structure To Biological Activity
pdb|3QQN|B Chain B, The Retinal Specific Cd147 Ig0 Domain: From Molecular
Structure To Biological Activity
Length = 137
Score = 35.8 bits (81), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 36/86 (41%), Gaps = 11/86 (12%)
Query: 39 FVVRPQDQKVGLNGIASFQCVAEGSPLPSVFWTQEG-------SQVLMFPGNAYGHLHVT 91
FV P Q+ + G C A GSP+P + W EG SQ+ H+H T
Sbjct: 24 FVQAPLSQQRWVGGSVELHCEAVGSPVPEIQWWFEGQGPNDIXSQLWDGARLDRVHIHAT 83
Query: 92 QE----GTLRIQGVQKEDAGFFVCSA 113
T+ I + +ED G + C A
Sbjct: 84 YHQHAASTISIDTLVEEDTGTYECRA 109
Score = 28.9 bits (63), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 11/19 (57%), Positives = 14/19 (73%)
Query: 156 LPCQAVGSPPPHIRWYKNG 174
L C+AVGSP P I+W+ G
Sbjct: 41 LHCEAVGSPVPEIQWWFEG 59
>pdb|1NBQ|A Chain A, Crystal Structure Of Human Junctional Adhesion Molecule
Type 1
pdb|1NBQ|B Chain B, Crystal Structure Of Human Junctional Adhesion Molecule
Type 1
Length = 209
Score = 35.8 bits (81), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 45/178 (25%), Positives = 71/178 (39%), Gaps = 30/178 (16%)
Query: 31 LTVHAPPSFVVRPQDQKVGLNGIASFQCVAEGSPLPSVFWT-QEGSQVLMFPGN-----A 84
+TVH+ V P++ V L+ C G P V W +G + N +
Sbjct: 5 VTVHSSEPEVRIPENNPVKLS------CAYSGFSSPRVEWKFDQGDTTRLVCYNNKITAS 58
Query: 85 YGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVTSVEDTPPPIVQVGPS 144
Y + + V +ED G + C G++ +++ IV V PS
Sbjct: 59 YEDRVTFLPTGITFKSVTREDTGTYTCMVSEEGGNSYGEVKVKL---------IVLVPPS 109
Query: 145 NQTLPLHSVAFLPCQAV-------GSPPPHIRWYKNGNSLP--PEDTRINVSSSGSLQ 193
T+ + S A + +AV GSPP W+K+G +P P+ TR +SS L
Sbjct: 110 KPTVNIPSSATIGNRAVLTCSEQDGSPPSEYTWFKDGIVMPTNPKSTRAFSNSSYVLN 167
>pdb|3BIK|A Chain A, Crystal Structure Of The Pd-1PD-L1 Complex
pdb|3BIS|A Chain A, Crystal Structure Of The Pd-L1
pdb|3BIS|B Chain B, Crystal Structure Of The Pd-L1
Length = 222
Score = 35.8 bits (81), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 34/125 (27%), Positives = 47/125 (37%), Gaps = 28/125 (22%)
Query: 2 ITEVKKSDEGKYQCYVQNMVGERETKPALLTVHAPPS------FVVRPQDQKVGLNGIAS 55
IT+VK D G Y+C + G + K + V+AP + VV P +
Sbjct: 84 ITDVKLQDAGVYRCMIS--YGGADYKRITVKVNAPYNKINQRILVVDP------VTSEHE 135
Query: 56 FQCVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALS 115
C AEG P V WT QVL G ++E+ F V S L
Sbjct: 136 LTCQAEGYPKAEVIWTSSDHQVL--------------SGKTTTTNSKREEKLFNVTSTLR 181
Query: 116 VAGST 120
+ +T
Sbjct: 182 INTTT 186
>pdb|3FN3|A Chain A, Dimeric Structure Of Pd-L1
pdb|3FN3|B Chain B, Dimeric Structure Of Pd-L1
Length = 221
Score = 35.8 bits (81), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 34/125 (27%), Positives = 47/125 (37%), Gaps = 28/125 (22%)
Query: 2 ITEVKKSDEGKYQCYVQNMVGERETKPALLTVHAPPS------FVVRPQDQKVGLNGIAS 55
IT+VK D G Y+C + G + K + V+AP + VV P +
Sbjct: 84 ITDVKLQDAGVYRCMIS--YGGADYKRITVKVNAPYNKINQRILVVDP------VTSEHE 135
Query: 56 FQCVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALS 115
C AEG P V WT QVL G ++E+ F V S L
Sbjct: 136 LTCQAEGYPKAEVIWTSSDHQVL--------------SGKTTTTNSKREEKLFNVTSTLR 181
Query: 116 VAGST 120
+ +T
Sbjct: 182 INTTT 186
>pdb|3O6F|D Chain D, Crystal Structure Of A Human Autoimmune Tcr Ms2-3c8 Bound
To Mhc Class Ii Self-Ligand MbpHLA-Dr4
pdb|3O6F|H Chain H, Crystal Structure Of A Human Autoimmune Tcr Ms2-3c8 Bound
To Mhc Class Ii Self-Ligand MbpHLA-Dr4
pdb|3T0E|D Chain D, Crystal Structure Of A Complete Ternary Complex Of T Cell
Receptor, Peptide-Mhc And Cd4
Length = 245
Score = 35.4 bits (80), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 40/92 (43%), Gaps = 8/92 (8%)
Query: 94 GTLRIQGVQKEDAGFFVCSALSVAGSTTVR--AFLQVTSVEDT----PPPIVQVGPSNQT 147
TL + ED+ F++CSA + ++ + ++T ED PP + PS
Sbjct: 75 STLTVTSAHPEDSSFYICSARGGSYNSPLHFGNGTRLTVTEDLKNVFPPEVAVFEPSEAE 134
Query: 148 LPLHSVAFLPCQAVGSPPPHIR--WYKNGNSL 177
+ A L C A G P H+ W+ NG +
Sbjct: 135 ISHTQKATLVCLATGFYPDHVELSWWVNGKEV 166
>pdb|1I8L|A Chain A, Human B7-1CTLA-4 Co-Stimulatory Complex
pdb|1I8L|B Chain B, Human B7-1CTLA-4 Co-Stimulatory Complex
Length = 208
Score = 35.4 bits (80), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 30/130 (23%), Positives = 53/130 (40%), Gaps = 17/130 (13%)
Query: 68 VFWTQEGSQVL-MFPGNA-----YGH---LHVTQEGTLRIQGVQKEDAGFFVCSALSVAG 118
++W +E VL M G+ Y + +T ++ I ++ D G + C L
Sbjct: 30 IYWQKEKKMVLTMMSGDMNIWPEYKNRTIFDITNNLSIVILALRPSDEGTYECVVLKYEK 89
Query: 119 STTVRAFLQVTSVE---DTPPPIVQVGPSNQTLPLHSVAFLPCQAVGS-PPPHIRWYKNG 174
R L ++ D P P + S+ +P ++ + C G P PH+ W +NG
Sbjct: 90 DAFKREHLAEVTLSVKADFPTPSI----SDFEIPTSNIRRIICSTSGGFPEPHLSWLENG 145
Query: 175 NSLPPEDTRI 184
L +T +
Sbjct: 146 EELNAINTTV 155
>pdb|1DR9|A Chain A, Crystal Structure Of A Soluble Form Of B7-1 (Cd80)
Length = 201
Score = 35.4 bits (80), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 30/130 (23%), Positives = 53/130 (40%), Gaps = 17/130 (13%)
Query: 68 VFWTQEGSQVL-MFPGNA-----YGH---LHVTQEGTLRIQGVQKEDAGFFVCSALSVAG 118
++W +E VL M G+ Y + +T ++ I ++ D G + C L
Sbjct: 30 IYWQKEKKMVLTMMSGDMNIWPEYKNRTIFDITNNLSIVILALRPSDEGTYECVVLKYEK 89
Query: 119 STTVRAFLQVTSVE---DTPPPIVQVGPSNQTLPLHSVAFLPCQAVGS-PPPHIRWYKNG 174
R L ++ D P P + S+ +P ++ + C G P PH+ W +NG
Sbjct: 90 DAFKREHLAEVTLSVKADFPTPSI----SDFEIPTSNIRRIICSTSGGFPEPHLSWLENG 145
Query: 175 NSLPPEDTRI 184
L +T +
Sbjct: 146 EELNAINTTV 155
>pdb|3QR2|A Chain A, Wild Type Cd147 Ig0 Domain
pdb|3QR2|B Chain B, Wild Type Cd147 Ig0 Domain
Length = 137
Score = 35.4 bits (80), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 36/86 (41%), Gaps = 11/86 (12%)
Query: 39 FVVRPQDQKVGLNGIASFQCVAEGSPLPSVFWTQEG-------SQVLMFPGNAYGHLHVT 91
FV P Q+ + G C A GSP+P + W EG SQ+ H+H T
Sbjct: 24 FVQAPLSQQRWVGGSVELHCEAVGSPVPEIQWWFEGQGPNDICSQLWDGARLDRVHIHAT 83
Query: 92 QE----GTLRIQGVQKEDAGFFVCSA 113
T+ I + +ED G + C A
Sbjct: 84 YHQHAASTISIDTLVEEDTGTYECRA 109
Score = 28.9 bits (63), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 11/19 (57%), Positives = 14/19 (73%)
Query: 156 LPCQAVGSPPPHIRWYKNG 174
L C+AVGSP P I+W+ G
Sbjct: 41 LHCEAVGSPVPEIQWWFEG 59
>pdb|2KDG|A Chain A, Solution Structure Of The 1st Ig Domain Of Myotilin
Length = 100
Score = 35.4 bits (80), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 26/99 (26%), Positives = 41/99 (41%), Gaps = 5/99 (5%)
Query: 36 PPSFVVRPQDQKVGLNGIASFQCVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEG- 94
PP F+ P++ + G P P V W G V + + V+++G
Sbjct: 5 PPRFIQVPENMSIDEGRFCRMDFKVSGLPAPDVSWYLNGRTV---QSDDLHKMIVSEKGL 61
Query: 95 -TLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVTSVE 132
+L + V+ DAG + C A + AG T L V + E
Sbjct: 62 HSLIFEVVRASDAGAYACVAKNRAGEATFTVQLDVLAKE 100
Score = 33.9 bits (76), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 34/67 (50%), Gaps = 4/67 (5%)
Query: 135 PPPIVQVGPSNQTLPLHSVAFLPCQAVGSPPPHIRWYKNGNSLPPEDT-RINVSSSG--S 191
PP +QV P N ++ + + G P P + WY NG ++ +D ++ VS G S
Sbjct: 5 PPRFIQV-PENMSIDEGRFCRMDFKVSGLPAPDVSWYLNGRTVQSDDLHKMIVSEKGLHS 63
Query: 192 LQIDVLR 198
L +V+R
Sbjct: 64 LIFEVVR 70
>pdb|3QJF|B Chain B, Crystal Structure Of The 2b4 Tcr
pdb|3QJF|D Chain D, Crystal Structure Of The 2b4 Tcr
Length = 244
Score = 35.0 bits (79), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 39/167 (23%), Positives = 63/167 (37%), Gaps = 34/167 (20%)
Query: 37 PSFVVRPQDQKVGLNGIASFQCVAEGSPLPSVFWTQEGS-----------------QVLM 79
P ++V+ Q QK A +C+ E P VFW Q+ Q+ M
Sbjct: 8 PRYLVKGQGQK------AKMRCIPEKGH-PVVFWYQQNKNNEFKFLINFQNQEVLQQIDM 60
Query: 80 FPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRAF---LQVTSVEDT-- 134
+L IQ + D+ ++C++ S+ S + F ++ +ED
Sbjct: 61 TEKRFSAECPSNSPCSLEIQSSEAGDSALYLCAS-SLNWSQDTQYFGPGTRLLVLEDLKN 119
Query: 135 --PPPIVQVGPSNQTLPLHSVAFLPCQAVGSPPPHIR--WYKNGNSL 177
PP + PS + A L C A G P H+ W+ NG +
Sbjct: 120 VFPPEVAVFEPSEAEISHTQKATLVCLATGFYPDHVELSWWVNGKEV 166
>pdb|1F97|A Chain A, Soluble Part Of The Junction Adhesion Molecule From Mouse
Length = 212
Score = 34.7 bits (78), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 49/193 (25%), Positives = 76/193 (39%), Gaps = 22/193 (11%)
Query: 32 TVHAPPSFVVRPQDQKVGLNGIASFQCVAEGSPLPSVFWT-QEGSQVLMFPGNA-----Y 85
+V+ S V P+++ + L C G P V W +GS + N+ Y
Sbjct: 3 SVYTAQSDVQVPENESIKLT------CTYSGFSSPRVEWKFVQGSTTALVCYNSQITAPY 56
Query: 86 GHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVTSVEDTPPPIVQVGPSN 145
+ V ++D G + C G + +T + P + V PS+
Sbjct: 57 ADRVTFSSSGITFSSVTRKDNGEYTCMVSEEGGQNYGEVSIHLTVLVPPSKPTISV-PSS 115
Query: 146 QTLPLHSVAFLPC-QAVGSPPPHIRWYKNGNSLPPED---TRINVSSSGSLQIDVLRDDF 201
T+ +V L C + GSPP W+K+G S+ D TR ++S S ID D
Sbjct: 116 VTIGNRAV--LTCSEHDGSPPSEYSWFKDGISMLTADAKKTRAFMNS--SFTIDPKSGDL 171
Query: 202 RAEPKDTRVASGE 214
+P T SGE
Sbjct: 172 IFDPV-TAFDSGE 183
>pdb|2E9W|A Chain A, Crystal Structure Of The Extracellular Domain Of Kit In
Complex With Stem Cell Factor (Scf)
pdb|2E9W|B Chain B, Crystal Structure Of The Extracellular Domain Of Kit In
Complex With Stem Cell Factor (Scf)
Length = 489
Score = 34.3 bits (77), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 30/62 (48%), Gaps = 3/62 (4%)
Query: 70 WTQEGSQVLM---FPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRAFL 126
W +E SQ + + +G + ++ TL I + D+G F+C A + GS V L
Sbjct: 221 WKRENSQTKLQEKYNSWHHGDFNYERQATLTISSARVNDSGVFMCYANNTFGSANVTTTL 280
Query: 127 QV 128
+V
Sbjct: 281 EV 282
>pdb|2NZI|A Chain A, Crystal Structure Of Domains A168-A170 From Titin
pdb|2NZI|B Chain B, Crystal Structure Of Domains A168-A170 From Titin
Length = 305
Score = 34.3 bits (77), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 53/217 (24%), Positives = 83/217 (38%), Gaps = 23/217 (10%)
Query: 1 MITEVKKSDEGKYQCYVQNMVGERETKPALLTVHAPPSFVVRPQDQKVG----LNG-IAS 55
+I V D YQ N G + A L V P + + +G L G + S
Sbjct: 65 IIASVTDDDATVYQVRATNQ-GGSVSGTASLEVEVPAKIHLPKTLEGMGAVHALRGEVVS 123
Query: 56 FQCVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRI--QGVQKEDAGFFVCSA 113
+ G P P + W Q+G ++ N + + VT+ T + GV+++DAGF+V A
Sbjct: 124 IKIPFSGKPDPVITW-QKGQDLI--DNNGHYQVIVTRSFTSLVFPNGVERKDAGFYVVCA 180
Query: 114 LSVAGSTTVRAFLQVTSVEDTPPPIVQVGPSNQTLPLHSVAFLPCQAVGSPPPHI----- 168
+ G L V V D P + S ++ L P GS +
Sbjct: 181 KNRFGIDQKTVELDVADVPDPPRGVKVSDVSRDSVNLTWTE--PASDGGSKITNYIVEKC 238
Query: 169 -----RWYKNGNSLPPEDTRINVSSSGSLQIDVLRDD 200
RW + G + T IN+ S Q V+ ++
Sbjct: 239 ATTAERWLRVGQARETRYTVINLFGKTSYQFRVIAEN 275
Score = 31.2 bits (69), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 41/167 (24%), Positives = 60/167 (35%), Gaps = 19/167 (11%)
Query: 37 PSFVVRPQDQKVGLNGIASFQCVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQE--- 93
P F ++ V A+ C G P P V W ++G +++ A G + QE
Sbjct: 5 PHFKEELRNLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEII-----ADGLKYRIQEFKG 59
Query: 94 --GTLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVTSVEDTPPPIVQVGPSNQTLPLH 151
L I V +DA + A + GS + A L+V P G
Sbjct: 60 GYHQLIIASVTDDDATVYQVRATNQGGSVSGTASLEVEVPAKIHLPKTLEGMGAVHALRG 119
Query: 152 SVAFLPCQAVGSPPPHIRWYKNGNSLPPEDTRINVSSSGSLQIDVLR 198
V + G P P I W K G L + ++G Q+ V R
Sbjct: 120 EVVSIKIPFSGKPDPVITWQK-GQDL--------IDNNGHYQVIVTR 157
>pdb|2EC8|A Chain A, Crystal Structure Of The Exctracellular Domain Of The
Receptor Tyrosine Kinase, Kit
Length = 524
Score = 34.3 bits (77), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 30/62 (48%), Gaps = 3/62 (4%)
Query: 70 WTQEGSQVLM---FPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRAFL 126
W +E SQ + + +G + ++ TL I + D+G F+C A + GS V L
Sbjct: 246 WKRENSQTKLQEKYNSWHHGDFNYERQATLTISSARVNDSGVFMCYANNTFGSANVTTTL 305
Query: 127 QV 128
+V
Sbjct: 306 EV 307
>pdb|2YPL|E Chain E, Structural Features Underlying T-cell Receptor Sensitivity
To Concealed Mhc Class I Micropolymorphisms
Length = 238
Score = 34.3 bits (77), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 37/88 (42%), Gaps = 7/88 (7%)
Query: 96 LRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVTSVEDT----PPPIVQVGPSNQTLPLH 151
L + QK F++C++ G T + ++T ED PP + PS +
Sbjct: 74 LTVTSAQKNPTAFYLCASTGSYG-YTFGSGTRLTVTEDLKNVFPPEVAVFEPSEAEISHT 132
Query: 152 SVAFLPCQAVGSPPPHIR--WYKNGNSL 177
A L C A G P H+ W+ NG +
Sbjct: 133 QKATLVCLATGFYPDHVELSWWVNGKEV 160
>pdb|3MV7|E Chain E, Crystal Structure Of The Tk3 Tcr In Complex With
Hla-B3501HPVG
Length = 241
Score = 34.3 bits (77), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 25/111 (22%), Positives = 46/111 (41%), Gaps = 10/111 (9%)
Query: 73 EGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVTSVE 132
+G+ + F + LH L + ++ D+ + C++ + +G ++T +E
Sbjct: 57 KGNILERFSAQQFPDLH----SELNLSSLELGDSALYFCASSARSGELFFGEGSRLTVLE 112
Query: 133 DT----PPPIVQVGPSNQTLPLHSVAFLPCQAVGSPPPHIR--WYKNGNSL 177
D PP + PS + A L C A G P H+ W+ NG +
Sbjct: 113 DLKNVFPPEVAVFEPSEAEISHTQKATLVCLATGFYPDHVELSWWVNGKEV 163
>pdb|3MV9|E Chain E, Crystal Structure Of The Tk3-Gln55ala Tcr In Complex With
Hla- B3501HPVG
Length = 241
Score = 34.3 bits (77), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 25/111 (22%), Positives = 46/111 (41%), Gaps = 10/111 (9%)
Query: 73 EGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVTSVE 132
+G+ + F + LH L + ++ D+ + C++ + +G ++T +E
Sbjct: 57 KGNILERFSAQQFPDLH----SELNLSSLELGDSALYFCASSARSGELFFGEGSRLTVLE 112
Query: 133 DT----PPPIVQVGPSNQTLPLHSVAFLPCQAVGSPPPHIR--WYKNGNSL 177
D PP + PS + A L C A G P H+ W+ NG +
Sbjct: 113 DLKNVFPPEVAVFEPSEAEISHTQKATLVCLATGFYPDHVELSWWVNGKEV 163
>pdb|3MV8|E Chain E, Crystal Structure Of The Tk3-Gln55his Tcr In Complex With
Hla- B3501HPVG
Length = 242
Score = 33.9 bits (76), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 25/111 (22%), Positives = 46/111 (41%), Gaps = 10/111 (9%)
Query: 73 EGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVTSVE 132
+G+ + F + LH L + ++ D+ + C++ + +G ++T +E
Sbjct: 58 KGNILERFSAQQFPDLH----SELNLSSLELGDSALYFCASSARSGELFFGEGSRLTVLE 113
Query: 133 DT----PPPIVQVGPSNQTLPLHSVAFLPCQAVGSPPPHIR--WYKNGNSL 177
D PP + PS + A L C A G P H+ W+ NG +
Sbjct: 114 DLKNVFPPEVAVFEPSEAEISHTQKATLVCLATGFYPDHVELSWWVNGKEV 164
>pdb|3SCM|D Chain D, Crystal Structure Of Autoreactive-Valpha14-Vbeta6 Nkt Tcr
In Complex With Cd1d-Isoglobotrihexosylceramide
pdb|3SDA|D Chain D, Crystal Structure Of Autoreactive-Valpha14-Vbeta6 Nkt Tcr
In Complex With Cd1d-Beta-Galactosylceramide
pdb|3SDC|D Chain D, Crystal Structure Of Autoreactive-Valpha14-Vbeta6 Nkt Tcr
In Complex With Cd1d-Globotrihexosylceramide
pdb|3SDD|D Chain D, Crystal Structure Of Autoreactive-Valpha14-Vbeta6 Nkt Tcr
In Complex With Cd1d-Beta-Lactosylceramide
Length = 245
Score = 33.9 bits (76), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 40/93 (43%), Gaps = 12/93 (12%)
Query: 95 TLRIQGVQKEDAGFFVCSALSVAGSTTVRAFL----QVTSVEDT----PPPIVQVGPSNQ 146
+L + QK + F+C++ S+ V F ++T VED PP + PS
Sbjct: 77 SLTVTSAQKNEMAVFLCASGSLLDVREV--FFGKGTRLTVVEDLKNVFPPEVAVFEPSEA 134
Query: 147 TLPLHSVAFLPCQAVGSPPPHIR--WYKNGNSL 177
+ A L C A G P H+ W+ NG +
Sbjct: 135 EISHTQKATLVCLATGFYPDHVELSWWVNGKEV 167
>pdb|2IJ0|E Chain E, Structural Basis Of T Cell Specificity And Activation By
The Bacterial Superantigen Toxic Shock Syndrome Toxin-1
pdb|2IJ0|C Chain C, Structural Basis Of T Cell Specificity And Activation By
The Bacterial Superantigen Toxic Shock Syndrome Toxin-1
Length = 118
Score = 33.9 bits (76), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 14/27 (51%), Positives = 20/27 (74%)
Query: 95 TLRIQGVQKEDAGFFVCSALSVAGSTT 121
TL + ED+GF+VCSAL+ +GS+T
Sbjct: 78 TLTVTSAHPEDSGFYVCSALAGSGSST 104
>pdb|1NCT|A Chain A, Titin Module M5, N-Terminally Extended, Nmr
pdb|1NCU|A Chain A, Titin Module M5, N-Terminally Extended, Nmr
Length = 106
Score = 33.9 bits (76), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 35/72 (48%), Gaps = 4/72 (5%)
Query: 39 FVVRPQDQKVGLNGIASFQCVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQ-EGTLR 97
+ +P+ V A F C +G P+P+V W ++G QVL +A + T+ + T
Sbjct: 17 ILTKPRSMTVYEGESARFSCDTDGEPVPTVTWLRKG-QVL--STSARHQVTTTKYKSTFE 73
Query: 98 IQGVQKEDAGFF 109
I VQ D G +
Sbjct: 74 ISSVQASDEGNY 85
Score = 30.4 bits (67), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 14/46 (30%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
Query: 204 EPKDTRVASGETALLECGPPKGQPEPTLHWKKNGQFIDLESSKRVS 249
+P+ V GE+A C G+P PT+ W + GQ + + +V+
Sbjct: 20 KPRSMTVYEGESARFSCDTD-GEPVPTVTWLRKGQVLSTSARHQVT 64
>pdb|1TNM|A Chain A, Tertiary Structure Of An Immunoglobulin-Like Domain From
The Muscle Protein Titin: A New Member Of The I Set
pdb|1TNN|A Chain A, Tertiary Structure Of An Immunoglobulin-Like Domain From
The Muscle Protein Titin: A New Member Of The I Set
Length = 100
Score = 33.5 bits (75), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 35/72 (48%), Gaps = 4/72 (5%)
Query: 39 FVVRPQDQKVGLNGIASFQCVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQ-EGTLR 97
+ +P+ V A F C +G P+P+V W ++G QVL +A + T+ + T
Sbjct: 11 ILTKPRSMTVYEGESARFSCDTDGEPVPTVTWLRKG-QVL--STSARHQVTTTKYKSTFE 67
Query: 98 IQGVQKEDAGFF 109
I VQ D G +
Sbjct: 68 ISSVQASDEGNY 79
Score = 30.4 bits (67), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 14/47 (29%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
Query: 203 AEPKDTRVASGETALLECGPPKGQPEPTLHWKKNGQFIDLESSKRVS 249
+P+ V GE+A C G+P PT+ W + GQ + + +V+
Sbjct: 13 TKPRSMTVYEGESARFSCDTD-GEPVPTVTWLRKGQVLSTSARHQVT 58
>pdb|2Y25|A Chain A, Crystal Structure Of The Myomesin Domains My11-My13
pdb|2Y25|B Chain B, Crystal Structure Of The Myomesin Domains My11-My13
pdb|2Y25|C Chain C, Crystal Structure Of The Myomesin Domains My11-My13
pdb|2Y25|D Chain D, Crystal Structure Of The Myomesin Domains My11-My13
Length = 317
Score = 33.5 bits (75), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 48/209 (22%), Positives = 76/209 (36%), Gaps = 33/209 (15%)
Query: 1 MITEVKKSDEGKYQCYVQNMVGERETKPALLTVHAPPSFVVRPQDQKVGLNGI-ASFQCV 59
+ITE K D G Y+ +++ G+ +++ L V ++ +K+ L+ Q
Sbjct: 64 LITEFSKKDAGIYEVILKDDRGKDKSRLKL--VDEAFKELMMEVCKKIALSATDLKIQST 121
Query: 60 AEGSPLPS----------VFWTQEGSQVLMFPGNAYGHLHVTQEGT-LRIQGVQKEDAGF 108
AEG L S V W+ GS + G VT E L+I D G
Sbjct: 122 AEGIQLYSFVTYYVEDLKVNWSHNGSAIRYSDRVKTG---VTGEQIWLQINEPTPNDKGK 178
Query: 109 FVCS----------ALSVAGSTTVRAFL------QVTSVEDTPPPIVQVGPSNQTLPLHS 152
+V + ++G A+ Q E ++ P T+
Sbjct: 179 YVMELFDGKTGHQKTVDLSGQAYDEAYAEFQRLKQAAIAEKNRARVLGGLPDVVTIQEGK 238
Query: 153 VAFLPCQAVGSPPPHIRWYKNGNSLPPED 181
L C G PPP + W KN +L +D
Sbjct: 239 ALNLTCNVWGDPPPEVSWLKNEKALASDD 267
>pdb|2CPC|A Chain A, Solution Structure Of Rsgi Ruh-030, An Ig Like Domain From
Human Cdna
Length = 113
Score = 33.5 bits (75), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 42/85 (49%), Gaps = 15/85 (17%)
Query: 64 PLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLR---IQGVQKEDAGFFVCSALSVAGST 120
P V WT++G +V+ P L + +E T+R + VQ ED+G ++C + S
Sbjct: 40 PWAEVRWTKDGEEVVESPA-----LLLQKEDTVRRLVLPAVQLEDSGEYLCEIDDESASF 94
Query: 121 TVRAFLQVTSVEDTPPPIVQVGPSN 145
TV +V + P I+ GPS+
Sbjct: 95 TV-------TVTEPPVRIIYSGPSS 112
>pdb|4GG6|F Chain F, Protein Complex
pdb|4GG6|H Chain H, Protein Complex
pdb|4GG8|F Chain F, Immune Receptor
pdb|4GG8|B Chain B, Immune Receptor
Length = 245
Score = 33.1 bits (74), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 28/115 (24%), Positives = 49/115 (42%), Gaps = 14/115 (12%)
Query: 73 EGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVC-SALSVAGSTTVRAF---LQV 128
+G+ + F + LH L + ++ D+ + C S+++V+ T + F ++
Sbjct: 57 KGNILERFSAQQFPDLH----SELNLSSLELGDSALYFCASSVAVSAGTYEQYFGPGTRL 112
Query: 129 TSVEDT----PPPIVQVGPSNQTLPLHSVAFLPCQAVGSPPPHIR--WYKNGNSL 177
T ED PP + PS + A L C A G P H+ W+ NG +
Sbjct: 113 TVTEDLKNVFPPEVAVFEPSEAEISHTQKATLVCLATGFYPDHVELSWWVNGKEV 167
>pdb|2ENS|A Chain A, Solution Structure Of The Third Ig-Like Domain From Human
Advanced Glycosylation End Product-Specific Receptor
Length = 96
Score = 33.1 bits (74), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 27/50 (54%), Gaps = 3/50 (6%)
Query: 188 SSGSLQIDVLRDDFRAEPKDTRVASGETALLECGPPKGQPEPTLHWKKNG 237
SSGS ++ ++ EP+ VA G T L C P QP P +HW K+G
Sbjct: 2 SSGSSGLEEVQ--LVVEPEGGAVAPGGTVTLTCEVPA-QPSPQIHWMKDG 48
>pdb|3MFG|B Chain B, Crystal Structure Of Toxic Shock Syndrome Toxin 1 (Tsst-1)
In Complex With The Human T Cell Receptor Beta Chain
Vbeta2.1 (Ep-8)
Length = 118
Score = 33.1 bits (74), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 20/27 (74%)
Query: 95 TLRIQGVQKEDAGFFVCSALSVAGSTT 121
TL + ED+GF++CSAL+ +GS+T
Sbjct: 78 TLTVTSAHPEDSGFYICSALAGSGSST 104
>pdb|1HNG|A Chain A, Crystal Structure At 2.8 Angstroms Resolution Of A Soluble
Form Of The Cell Adhesion Molecule Cd2
pdb|1HNG|B Chain B, Crystal Structure At 2.8 Angstroms Resolution Of A Soluble
Form Of The Cell Adhesion Molecule Cd2
Length = 176
Score = 33.1 bits (74), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 28/142 (19%), Positives = 54/142 (38%), Gaps = 13/142 (9%)
Query: 79 MFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVTSVEDTPPPI 138
M P G + G L+I+ + ++D+G + + S G+ + L + +E P+
Sbjct: 46 MKPFLKSGAFEILANGDLKIKNLTRDDSGTYNVTVYSTNGTRILNKALDLRILEMVSKPM 105
Query: 139 VQVGPSNQTLPLHSVAFLPCQAVGSPPPHIRWYKNGNSLPPEDTRINVSSSGSLQIDVLR 198
+ SN T L C+ + ++ Y+ E R + S Q LR
Sbjct: 106 IYWECSNAT--------LTCEVLEGTDVELKLYQG-----KEHLRSLRQKTMSYQWTNLR 152
Query: 199 DDFRAEPKDTRVASGETALLEC 220
F+ + + E ++ C
Sbjct: 153 APFKCKAVNRVSQESEMEVVNC 174
>pdb|2AXH|A Chain A, Crystal Structures Of T Cell Receptor Beta Chains Related
To Rheumatoid Arthritis
pdb|2AXH|B Chain B, Crystal Structures Of T Cell Receptor Beta Chains Related
To Rheumatoid Arthritis
Length = 242
Score = 32.7 bits (73), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 38/91 (41%), Gaps = 11/91 (12%)
Query: 96 LRIQGVQKEDAGFFVCSALSVAGSTTVRAF---LQVTSVEDT----PPPIVQVGPSNQTL 148
L + QK F++C+ S G + F ++T +ED PP + PS +
Sbjct: 76 LTVTSAQKNPTAFYLCA--SSIGQXNEQYFGPGTRLTVLEDLKNVFPPEVAVFEPSEAEI 133
Query: 149 PLHSVAFLPCQAVGSPPPHIR--WYKNGNSL 177
A L C A G P H+ W+ NG +
Sbjct: 134 SHTQKATLVCLATGFYPDHVELSWWVNGKEV 164
>pdb|3UTT|E Chain E, 1e6-A0201-Alwgpdpaaa Complex, Triclinic
pdb|3UTT|J Chain J, 1e6-A0201-Alwgpdpaaa Complex, Triclinic
Length = 245
Score = 32.3 bits (72), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 25/94 (26%), Positives = 42/94 (44%), Gaps = 10/94 (10%)
Query: 94 GTLRIQGVQKEDAGFFVC-SALSVAGSTTVRAF---LQVTSVEDT----PPPIVQVGPSN 145
TL+IQ + D+ + C S+L + ++ F +++ +ED PP + PS
Sbjct: 74 STLKIQPSEPRDSAVYFCASSLWEKLAKNIQYFGAGTRLSVLEDLKNVFPPEVAVFEPSE 133
Query: 146 QTLPLHSVAFLPCQAVGSPPPHIR--WYKNGNSL 177
+ A L C A G P H+ W+ NG +
Sbjct: 134 AEISHTQKATLVCLATGFYPDHVELSWWVNGKEV 167
>pdb|3UTP|E Chain E, 1e6 Tcr Specific For Hla-A0201-Alwgpdpaaa
pdb|3UTP|L Chain L, 1e6 Tcr Specific For Hla-A0201-Alwgpdpaaa
pdb|3UTS|E Chain E, 1e6-A0201-Alwgpdpaaa Complex, Monoclinic
pdb|3UTS|J Chain J, 1e6-A0201-Alwgpdpaaa Complex, Monoclinic
Length = 246
Score = 32.3 bits (72), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 25/94 (26%), Positives = 42/94 (44%), Gaps = 10/94 (10%)
Query: 94 GTLRIQGVQKEDAGFFVC-SALSVAGSTTVRAF---LQVTSVEDT----PPPIVQVGPSN 145
TL+IQ + D+ + C S+L + ++ F +++ +ED PP + PS
Sbjct: 75 STLKIQPSEPRDSAVYFCASSLWEKLAKNIQYFGAGTRLSVLEDLKNVFPPEVAVFEPSE 134
Query: 146 QTLPLHSVAFLPCQAVGSPPPHIR--WYKNGNSL 177
+ A L C A G P H+ W+ NG +
Sbjct: 135 AEISHTQKATLVCLATGFYPDHVELSWWVNGKEV 168
>pdb|2DM2|A Chain A, Solution Structure Of The First Ig Domain Of Human
Palladin
Length = 110
Score = 32.3 bits (72), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 22/101 (21%), Positives = 43/101 (42%), Gaps = 4/101 (3%)
Query: 37 PSFVVRPQDQKVGLNGIASFQCVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTL 96
P F ++ + K+ +F C G+P P ++W ++G Q+ P + + + +GT
Sbjct: 9 PFFEMKLKHYKIFEGMPVTFTCRVAGNPKPKIYWFKDGKQIS--PKSDHYTIQRDLDGTC 66
Query: 97 RIQGVQK--EDAGFFVCSALSVAGSTTVRAFLQVTSVEDTP 135
+ +D G + A + G + L V +V P
Sbjct: 67 SLHTTASTLDDDGNYTIMAANPQGRISCTGRLMVQAVNSGP 107
Score = 30.0 bits (66), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 9/31 (29%), Positives = 16/31 (51%)
Query: 156 LPCQAVGSPPPHIRWYKNGNSLPPEDTRINV 186
C+ G+P P I W+K+G + P+ +
Sbjct: 28 FTCRVAGNPKPKIYWFKDGKQISPKSDHYTI 58
>pdb|3Q5Y|A Chain A, V BetaV BETA HOMODIMERIZATION-Based Pre-Tcr Model
Suggested By Tcr Beta Crystal Structures
pdb|3Q5Y|B Chain B, V BetaV BETA HOMODIMERIZATION-Based Pre-Tcr Model
Suggested By Tcr Beta Crystal Structures
pdb|3Q5Y|C Chain C, V BetaV BETA HOMODIMERIZATION-Based Pre-Tcr Model
Suggested By Tcr Beta Crystal Structures
pdb|3Q5Y|D Chain D, V BetaV BETA HOMODIMERIZATION-Based Pre-Tcr Model
Suggested By Tcr Beta Crystal Structures
Length = 240
Score = 32.3 bits (72), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 23/89 (25%), Positives = 38/89 (42%), Gaps = 7/89 (7%)
Query: 96 LRIQGVQKEDAGFFVC-SALSVAGSTTVRAFLQVTSVED----TPPPIVQVGPSNQTLPL 150
+ + ++ ED+ + C S+L ++T +ED TPP + PS +
Sbjct: 77 MNMSALELEDSAMYFCASSLRWGDEQYFGPGTRLTVLEDLRNVTPPKVSLFEPSKAEIAN 136
Query: 151 HSVAFLPCQAVGSPPPHIR--WYKNGNSL 177
A L C A G P H+ W+ NG +
Sbjct: 137 KQKATLVCLARGFFPDHVELSWWVNGKEV 165
>pdb|1NFD|B Chain B, An Alpha-Beta T Cell Receptor (Tcr) Heterodimer In Complex
With An Anti-Tcr Fab Fragment Derived From A Mitogenic
Antibody
pdb|1NFD|D Chain D, An Alpha-Beta T Cell Receptor (Tcr) Heterodimer In Complex
With An Anti-Tcr Fab Fragment Derived From A Mitogenic
Antibody
Length = 239
Score = 32.3 bits (72), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 23/89 (25%), Positives = 38/89 (42%), Gaps = 7/89 (7%)
Query: 96 LRIQGVQKEDAGFFVC-SALSVAGSTTVRAFLQVTSVED----TPPPIVQVGPSNQTLPL 150
+ + ++ ED+ + C S+L ++T +ED TPP + PS +
Sbjct: 76 MNMSALELEDSAMYFCASSLRWGDEQYFGPGTRLTVLEDLRNVTPPKVSLFEPSKAEIAN 135
Query: 151 HSVAFLPCQAVGSPPPHIR--WYKNGNSL 177
A L C A G P H+ W+ NG +
Sbjct: 136 KQKATLVCLARGFFPDHVELSWWVNGKEV 164
>pdb|2VLR|E Chain E, The Structural Dynamics And Energetics Of An
Immunodominant T-cell Receptor Are Programmed By Its
Vbeta Domain
pdb|2VLR|J Chain J, The Structural Dynamics And Energetics Of An
Immunodominant T-cell Receptor Are Programmed By Its
Vbeta Domain
Length = 244
Score = 32.3 bits (72), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 36/89 (40%), Gaps = 7/89 (7%)
Query: 96 LRIQGVQKEDAGFFVCSALSVAGSTTVRA-FLQVTSVEDT----PPPIVQVGPSNQTLPL 150
L + QK F++C++ S A ++T ED PP + PS +
Sbjct: 78 LTVTSAQKNPTAFYLCASSSRASYEQYFGPGTRLTVTEDLKNVFPPEVAVFEPSEAEISH 137
Query: 151 HSVAFLPCQAVGSPPPHIR--WYKNGNSL 177
A L C A G P H+ W+ NG +
Sbjct: 138 TQKATLVCLATGFYPDHVELSWWVNGKEV 166
>pdb|1GL4|B Chain B, Nidogen-1 G2PERLECAN IG3 COMPLEX
Length = 98
Score = 32.3 bits (72), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 40/88 (45%), Gaps = 15/88 (17%)
Query: 26 TKPALLTVHAPPSFVVRPQDQKVGLNGIASFQCVAEG-SPLPSVFWTQEGSQVLMFPGNA 84
+KP ++TV S VRP +F C A+ SP ++ WT+ + L P A
Sbjct: 7 SKPIMVTVEEQRSQSVRP-------GADVTFICTAKSKSPAYTLVWTRLHNGKL--PSRA 57
Query: 85 YGHLHVTQEGTLRIQGVQKEDAGFFVCS 112
G L I+ VQ DAG +VC+
Sbjct: 58 MDF-----NGILTIRNVQPSDAGTYVCT 80
>pdb|2AXJ|A Chain A, Crystal Structures Of T Cell Receptor Beta Chains Related
To Rheumatoid Arthritis
pdb|2AXJ|B Chain B, Crystal Structures Of T Cell Receptor Beta Chains Related
To Rheumatoid Arthritis
Length = 242
Score = 32.3 bits (72), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 38/92 (41%), Gaps = 13/92 (14%)
Query: 96 LRIQGVQKEDAGFFVCSALSVAGSTTVRAFL----QVTSVEDT----PPPIVQVGPSNQT 147
L + QK F++C++ T + F Q++ +ED PP + PS
Sbjct: 76 LTVTSAQKNPTAFYLCASRDRG---TEKLFFGSGTQLSVLEDLNKVFPPEVAVFEPSEAE 132
Query: 148 LPLHSVAFLPCQAVGSPPPHIR--WYKNGNSL 177
+ A L C A G P H+ W+ NG +
Sbjct: 133 ISHTQKATLVCLATGFYPDHVELSWWVNGKEV 164
>pdb|2XN9|B Chain B, Crystal Structure Of The Ternary Complex Between Human T
Cell Receptor, Staphylococcal Enterotoxin H And Human
Major Histocompatibility Complex Class Ii
pdb|2XNA|B Chain B, Crystal Structure Of The Complex Between Human T Cell
Receptor And Staphylococcal Enterotoxin
Length = 244
Score = 32.0 bits (71), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 39/91 (42%), Gaps = 11/91 (12%)
Query: 96 LRIQGVQKEDAGFFVCSALSVAGSTTVRAF---LQVTSVEDT----PPPIVQVGPSNQTL 148
L + QK F++C+ S + S+ + F ++T ED PP + PS +
Sbjct: 78 LTVTSAQKNPTAFYLCA--SSSRSSYEQYFGPGTRLTVTEDLKNVFPPEVAVFEPSEAEI 135
Query: 149 PLHSVAFLPCQAVGSPPPHIR--WYKNGNSL 177
A L C A G P H+ W+ NG +
Sbjct: 136 SHTQKATLVCLATGFYPDHVELSWWVNGKEV 166
>pdb|2VLJ|E Chain E, The Structural Dynamics And Energetics Of An
Immunodominant T-Cell Receptor Are Programmed By Its
Vbeta Domain
pdb|2VLK|E Chain E, The Structural Dynamics And Energetics Of An
Immunodominant T-Cell Receptor Are Programmed By Its
Vbeta Domain
pdb|2VLM|E Chain E, The Structural Dynamics And Energetics Of An
Immunodominant T-Cell Receptor Are Programmed By Its
Vbeta Domain
Length = 244
Score = 32.0 bits (71), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 39/91 (42%), Gaps = 11/91 (12%)
Query: 96 LRIQGVQKEDAGFFVCSALSVAGSTTVRAF---LQVTSVEDT----PPPIVQVGPSNQTL 148
L + QK F++C+ S + S+ + F ++T ED PP + PS +
Sbjct: 78 LTVTSAQKNPTAFYLCA--SSSRSSYEQYFGPGTRLTVTEDLKNVFPPEVAVFEPSEAEI 135
Query: 149 PLHSVAFLPCQAVGSPPPHIR--WYKNGNSL 177
A L C A G P H+ W+ NG +
Sbjct: 136 SHTQKATLVCLATGFYPDHVELSWWVNGKEV 166
>pdb|4GUP|A Chain A, Structure Of Mhc-Class I Related Molecule Mr1
pdb|4GUP|C Chain C, Structure Of Mhc-Class I Related Molecule Mr1
Length = 271
Score = 32.0 bits (71), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 37/73 (50%), Gaps = 7/73 (9%)
Query: 122 VRAFLQV--TSVEDTPPPIVQVGPSNQTLPLHSVAFLPCQAVGSPPPHIR--WYKNGNSL 177
++ FL+ +++ T PP+V+V +T P V L C+A G PP I W KNG +
Sbjct: 166 LKRFLEYGKDTLQRTEPPLVRVN-RKETFP--GVTALFCKAHGFYPPEIYMTWMKNGEEI 222
Query: 178 PPEDTRINVSSSG 190
E ++ SG
Sbjct: 223 VQEIDYGDILPSG 235
>pdb|1OGA|E Chain E, A Structural Basis For Immunodominant Human T-Cell
Receptor Recognition
Length = 252
Score = 32.0 bits (71), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 39/91 (42%), Gaps = 11/91 (12%)
Query: 96 LRIQGVQKEDAGFFVCSALSVAGSTTVRAF---LQVTSVEDT----PPPIVQVGPSNQTL 148
L + QK F++C+ S + S+ + F ++T ED PP + PS +
Sbjct: 78 LTVTSAQKNPTAFYLCA--SSSRSSYEQYFGPGTRLTVTEDLKNVFPPEVAVFEPSEAEI 135
Query: 149 PLHSVAFLPCQAVGSPPPHIR--WYKNGNSL 177
A L C A G P H+ W+ NG +
Sbjct: 136 SHTQKATLVCLATGFYPDHVELSWWVNGKEV 166
>pdb|2LE9|A Chain A, Ragec2-S100a13 Tetrameric Complex
pdb|2LE9|D Chain D, Ragec2-S100a13 Tetrameric Complex
Length = 93
Score = 31.6 bits (70), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 16/34 (47%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Query: 204 EPKDTRVASGETALLECGPPKGQPEPTLHWKKNG 237
EP+ VA G T L C P QP P +HW K+G
Sbjct: 9 EPEGGAVAPGGTVTLTCEVPA-QPSPQIHWMKDG 41
>pdb|3QIB|C Chain C, Crystal Structure Of The 2b4 Tcr In Complex With MccI-Ek
pdb|3QJF|A Chain A, Crystal Structure Of The 2b4 Tcr
pdb|3QJF|C Chain C, Crystal Structure Of The 2b4 Tcr
Length = 207
Score = 31.6 bits (70), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 34/137 (24%), Positives = 58/137 (42%), Gaps = 21/137 (15%)
Query: 20 MVGER-ETKPALLTVHAPPSFVVRPQDQKVGLNGIASFQCVAEGSPLPSVFWTQEGSQVL 78
M G++ E P+ L++H +R + + + FQ + GS L ++F+ G++
Sbjct: 1 MRGDQVEQSPSALSLHEGTGSALRC-NFTTTMRAVQWFQQNSRGS-LINLFYLASGTK-- 56
Query: 79 MFPGNAYGHLHVT-----QEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVT---- 129
G L T TL I+ Q ED+G + C+AL G F Q T
Sbjct: 57 -----ENGRLKSTFNSKESYSTLHIRDAQLEDSGTYFCAALRATGGNNKLTFGQGTVLSV 111
Query: 130 --SVEDTPPPIVQVGPS 144
+++ P + Q+ S
Sbjct: 112 IPDIQNPDPAVYQLRDS 128
>pdb|3GSN|B Chain B, Crystal Structure Of The Public Ra14 Tcr In Complex With
The Hcmv Dominant NlvHLA-A2 Epitope
Length = 243
Score = 31.6 bits (70), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 25/97 (25%), Positives = 38/97 (39%), Gaps = 9/97 (9%)
Query: 90 VTQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRAF---LQVTSVEDT----PPPIVQVG 142
T++ LR+ + C++ V G F ++T VED PP +
Sbjct: 69 TTEDFPLRLLSAAPSQTSVYFCASSPVTGGIYGYTFGSGTRLTVVEDLNKVFPPEVAVFE 128
Query: 143 PSNQTLPLHSVAFLPCQAVGSPPPHIR--WYKNGNSL 177
PS + A L C A G P H+ W+ NG +
Sbjct: 129 PSEAEISHTQKATLVCLATGFFPDHVELSWWVNGKEV 165
>pdb|4I0K|A Chain A, Crystal Structure Of Murine B7-H3 Extracellular Domain
Length = 222
Score = 31.6 bits (70), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 27/107 (25%), Positives = 47/107 (43%), Gaps = 11/107 (10%)
Query: 2 ITEVKKSDEGKYQCYVQNMVGERETKPALLTVHAP---PSFVVRP-QDQKVGLNGIASFQ 57
+ V+ +DEG Y C+V + + ++ L V AP PS + P +D + G + +
Sbjct: 76 LQRVRVTDEGSYTCFVS--IQDFDSAAVSLQVAAPYSKPSMTLEPNKDLRPG--NMVTIT 131
Query: 58 CVA-EGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQK 103
C + +G P VFW + Q + GN + G + V +
Sbjct: 132 CSSYQGYPEAEVFW--KDGQGVPLTGNVTTSQMANERGLFDVHSVLR 176
>pdb|2LQR|A Chain A, Nmr Structure Of Ig3 Domain Of Palladin
Length = 108
Score = 31.6 bits (70), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 22/98 (22%), Positives = 42/98 (42%), Gaps = 4/98 (4%)
Query: 37 PSFVVRPQDQKVGLNGIASFQCVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGT- 95
P F ++ + K+ +F C G+P P ++W ++G Q+ P + + + +GT
Sbjct: 8 PFFEMKLKHYKIFEGMPVTFTCRVAGNPKPKIYWFKDGKQIS--PKSDHYTIQRDLDGTC 65
Query: 96 -LRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVTSVE 132
L +D G + A + G + L V +V
Sbjct: 66 SLHTTASTLDDDGNYTIMAANPQGRVSCTGRLMVQAVN 103
Score = 30.4 bits (67), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 14/57 (24%), Positives = 22/57 (38%), Gaps = 12/57 (21%)
Query: 142 GPSNQTLPLHSVAF------------LPCQAVGSPPPHIRWYKNGNSLPPEDTRINV 186
G SN T P + C+ G+P P I W+K+G + P+ +
Sbjct: 1 GGSNATAPFFEMKLKHYKIFEGMPVTFTCRVAGNPKPKIYWFKDGKQISPKSDHYTI 57
>pdb|3TNN|L Chain L, Crystal Structure Of N5-I5 Fab, An Adcc Mediating And
Non-Neutralizing Cd4i Anti-Hiv- 1 Antibody.
pdb|3TNN|B Chain B, Crystal Structure Of N5-I5 Fab, An Adcc Mediating And
Non-Neutralizing Cd4i Anti-Hiv- 1 Antibody.
pdb|3TNN|D Chain D, Crystal Structure Of N5-I5 Fab, An Adcc Mediating And
Non-Neutralizing Cd4i Anti-Hiv- 1 Antibody.
pdb|3TNN|F Chain F, Crystal Structure Of N5-I5 Fab, An Adcc Mediating And
Non-Neutralizing Cd4i Anti-Hiv- 1 Antibody
Length = 217
Score = 31.2 bits (69), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 28/60 (46%), Gaps = 7/60 (11%)
Query: 94 GTLRIQGVQKEDAGFFVCSALSVAGSTTVRAF-----LQVTSVEDTPPPIVQVGPSNQTL 148
+L I G+Q ED + CS S AGSTT R F L V P + PS++ L
Sbjct: 73 ASLTISGLQAEDEADYYCS--SYAGSTTFRVFGGGTKLTVRGQPKAAPSVTLFPPSSEEL 130
>pdb|3DAR|A Chain A, Crystal Structure Of D2 Domain From Human Fgfr2
pdb|3DAR|B Chain B, Crystal Structure Of D2 Domain From Human Fgfr2
Length = 105
Score = 31.2 bits (69), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 19/73 (26%), Positives = 32/73 (43%), Gaps = 1/73 (1%)
Query: 56 FQCVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALS 115
F+C A G+P+P++ W + G + G+ Q +L ++ V D G + C +
Sbjct: 33 FRCPAGGNPMPTMRWLKNGKEFKQ-EHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVEN 91
Query: 116 VAGSTTVRAFLQV 128
GS L V
Sbjct: 92 EYGSINHTYHLDV 104
Score = 27.7 bits (60), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 12/35 (34%), Positives = 16/35 (45%)
Query: 146 QTLPLHSVAFLPCQAVGSPPPHIRWYKNGNSLPPE 180
+P + C A G+P P +RW KNG E
Sbjct: 23 HAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQE 57
>pdb|1WVZ|A Chain A, Solution Structure Of The D2 Domain Of The Fibroblast
Growth Factor
Length = 104
Score = 31.2 bits (69), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 19/73 (26%), Positives = 32/73 (43%), Gaps = 1/73 (1%)
Query: 56 FQCVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALS 115
F+C A G+P+P++ W + G + G+ Q +L ++ V D G + C +
Sbjct: 32 FRCPAGGNPMPTMRWLKNGKEFKQ-EHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVEN 90
Query: 116 VAGSTTVRAFLQV 128
GS L V
Sbjct: 91 EYGSINHTYHLDV 103
Score = 27.7 bits (60), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 12/35 (34%), Positives = 16/35 (45%)
Query: 146 QTLPLHSVAFLPCQAVGSPPPHIRWYKNGNSLPPE 180
+P + C A G+P P +RW KNG E
Sbjct: 22 HAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQE 56
>pdb|3QEU|B Chain B, The Crystal Structure Of Tcr Dmf5
pdb|3QEU|E Chain E, The Crystal Structure Of Tcr Dmf5
Length = 243
Score = 31.2 bits (69), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 31/76 (40%), Gaps = 6/76 (7%)
Query: 108 FFVCSALSVAGSTTVRAFLQVTSVEDT----PPPIVQVGPSNQTLPLHSVAFLPCQAVGS 163
+F S+LS ++T VED PP + PS + A L C A G
Sbjct: 90 YFCASSLSFGTEAFFGQGTRLTVVEDLNKVFPPEVAVFEPSEAEISHTQKATLVCLATGF 149
Query: 164 PPPHIR--WYKNGNSL 177
P H+ W+ NG +
Sbjct: 150 YPDHVELSWWVNGKEV 165
>pdb|3QDG|E Chain E, The Complex Between Tcr Dmf5 And Human Class I Mhc Hla-A2
With The Bound Mart-1(26-35)(A27l) Peptide
pdb|3QDJ|E Chain E, The Complex Between Tcr Dmf5 And Human Class I Mhc Hla-A2
With The Bound Mart-1(27-35) Nonameric Peptide
Length = 242
Score = 31.2 bits (69), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 31/76 (40%), Gaps = 6/76 (7%)
Query: 108 FFVCSALSVAGSTTVRAFLQVTSVEDT----PPPIVQVGPSNQTLPLHSVAFLPCQAVGS 163
+F S+LS ++T VED PP + PS + A L C A G
Sbjct: 89 YFCASSLSFGTEAFFGQGTRLTVVEDLNKVFPPEVAVFEPSEAEISHTQKATLVCLATGF 148
Query: 164 PPPHIR--WYKNGNSL 177
P H+ W+ NG +
Sbjct: 149 YPDHVELSWWVNGKEV 164
>pdb|3CAF|A Chain A, Crystal Structure Of Hfgfr2 D2 Domain
pdb|3CU1|A Chain A, Crystal Structure Of 2:2:2 Fgfr2d2:fgf1:sos Complex
pdb|3CU1|C Chain C, Crystal Structure Of 2:2:2 Fgfr2d2:fgf1:sos Complex
pdb|3EUU|A Chain A, Crystal Structure Of The Fgfr2 D2 Domain
pdb|3EUU|B Chain B, Crystal Structure Of The Fgfr2 D2 Domain
Length = 100
Score = 31.2 bits (69), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 19/73 (26%), Positives = 32/73 (43%), Gaps = 1/73 (1%)
Query: 56 FQCVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALS 115
F+C A G+P+P++ W + G + G+ Q +L ++ V D G + C +
Sbjct: 28 FRCPAGGNPMPTMRWLKNGKEFKQ-EHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVEN 86
Query: 116 VAGSTTVRAFLQV 128
GS L V
Sbjct: 87 EYGSINHTYHLDV 99
Score = 27.7 bits (60), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 12/35 (34%), Positives = 16/35 (45%)
Query: 146 QTLPLHSVAFLPCQAVGSPPPHIRWYKNGNSLPPE 180
+P + C A G+P P +RW KNG E
Sbjct: 18 HAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQE 52
>pdb|2ILL|A Chain A, Anomalous Substructure Of Titin-A168169
Length = 195
Score = 31.2 bits (69), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 30/134 (22%), Positives = 46/134 (34%), Gaps = 37/134 (27%)
Query: 145 NQTLPLHSVAFLPCQAVGSPPPHIRWYKNGNSLPPE--DTRINVSSSGSLQI---DVLRD 199
N + S A L C+ G P P ++WY+ G + + RI G Q+ V D
Sbjct: 11 NLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGGYHQLIIASVTDD 70
Query: 200 D---FRAEPKDTRVASGETALLECGPP-----------------------------KGQP 227
D ++ + + TA LE P G+P
Sbjct: 71 DATVYQVRATNQGGSVSGTASLEVEVPAKIHLPKTLEGMGAVHALRGEVVSIKIPFSGKP 130
Query: 228 EPTLHWKKNGQFID 241
+P + W+K ID
Sbjct: 131 DPVITWQKGQDLID 144
Score = 30.4 bits (67), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 41/167 (24%), Positives = 60/167 (35%), Gaps = 19/167 (11%)
Query: 37 PSFVVRPQDQKVGLNGIASFQCVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQE--- 93
P F ++ V A+ C G P P V W ++G +++ A G + QE
Sbjct: 3 PHFKEELRNLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEII-----ADGLKYRIQEFKG 57
Query: 94 --GTLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVTSVEDTPPPIVQVGPSNQTLPLH 151
L I V +DA + A + GS + A L+V P G
Sbjct: 58 GYHQLIIASVTDDDATVYQVRATNQGGSVSGTASLEVEVPAKIHLPKTLEGMGAVHALRG 117
Query: 152 SVAFLPCQAVGSPPPHIRWYKNGNSLPPEDTRINVSSSGSLQIDVLR 198
V + G P P I W K G L + ++G Q+ V R
Sbjct: 118 EVVSIKIPFSGKPDPVITWQK-GQDL--------IDNNGHYQVIVTR 155
Score = 30.0 bits (66), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 33/120 (27%), Positives = 52/120 (43%), Gaps = 11/120 (9%)
Query: 1 MITEVKKSDEGKYQCYVQNMVGERETKPALLTVHAPPSFVVRPQDQKVG----LNG-IAS 55
+I V D YQ N G + A L V P + + +G L G + S
Sbjct: 63 IIASVTDDDATVYQVRATNQ-GGSVSGTASLEVEVPAKIHLPKTLEGMGAVHALRGEVVS 121
Query: 56 FQCVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRI--QGVQKEDAGFFVCSA 113
+ G P P + W Q+G ++ N + + VT+ T + GV+++DAGF+V A
Sbjct: 122 IKIPFSGKPDPVITW-QKGQDLI--DNNGHYQVIVTRSFTSLVFPNGVERKDAGFYVVCA 178
>pdb|2J8H|A Chain A, Structure Of The Immunoglobulin Tandem Repeat A168-A169 Of
Titin
pdb|2J8O|A Chain A, Structure Of The Immunoglobulin Tandem Repeat Of Titin
A168- A169
pdb|2J8O|B Chain B, Structure Of The Immunoglobulin Tandem Repeat Of Titin
A168- A169
Length = 197
Score = 31.2 bits (69), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 30/134 (22%), Positives = 46/134 (34%), Gaps = 37/134 (27%)
Query: 145 NQTLPLHSVAFLPCQAVGSPPPHIRWYKNGNSLPPE--DTRINVSSSGSLQI---DVLRD 199
N + S A L C+ G P P ++WY+ G + + RI G Q+ V D
Sbjct: 13 NLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGGYHQLIIASVTDD 72
Query: 200 D---FRAEPKDTRVASGETALLECGPP-----------------------------KGQP 227
D ++ + + TA LE P G+P
Sbjct: 73 DATVYQVRATNQGGSVSGTASLEVEVPAKIHLPKTLEGMGAVHALRGEVVSIKIPFSGKP 132
Query: 228 EPTLHWKKNGQFID 241
+P + W+K ID
Sbjct: 133 DPVITWQKGQDLID 146
Score = 30.4 bits (67), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 41/167 (24%), Positives = 60/167 (35%), Gaps = 19/167 (11%)
Query: 37 PSFVVRPQDQKVGLNGIASFQCVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQE--- 93
P F ++ V A+ C G P P V W ++G +++ A G + QE
Sbjct: 5 PHFKEELRNLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEII-----ADGLKYRIQEFKG 59
Query: 94 --GTLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVTSVEDTPPPIVQVGPSNQTLPLH 151
L I V +DA + A + GS + A L+V P G
Sbjct: 60 GYHQLIIASVTDDDATVYQVRATNQGGSVSGTASLEVEVPAKIHLPKTLEGMGAVHALRG 119
Query: 152 SVAFLPCQAVGSPPPHIRWYKNGNSLPPEDTRINVSSSGSLQIDVLR 198
V + G P P I W K G L + ++G Q+ V R
Sbjct: 120 EVVSIKIPFSGKPDPVITWQK-GQDL--------IDNNGHYQVIVTR 157
Score = 30.0 bits (66), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 33/120 (27%), Positives = 52/120 (43%), Gaps = 11/120 (9%)
Query: 1 MITEVKKSDEGKYQCYVQNMVGERETKPALLTVHAPPSFVVRPQDQKVG----LNG-IAS 55
+I V D YQ N G + A L V P + + +G L G + S
Sbjct: 65 IIASVTDDDATVYQVRATNQ-GGSVSGTASLEVEVPAKIHLPKTLEGMGAVHALRGEVVS 123
Query: 56 FQCVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRI--QGVQKEDAGFFVCSA 113
+ G P P + W Q+G ++ N + + VT+ T + GV+++DAGF+V A
Sbjct: 124 IKIPFSGKPDPVITW-QKGQDLI--DNNGHYQVIVTRSFTSLVFPNGVERKDAGFYVVCA 180
>pdb|3EPC|R Chain R, Cryoem Structure Of Poliovirus Receptor Bound To
Poliovirus Type 1
pdb|3EPD|R Chain R, Cryoem Structure Of Poliovirus Receptor Bound To
Poliovirus Type 3
pdb|3EPF|R Chain R, Cryoem Structure Of Poliovirus Receptor Bound To
Poliovirus Type 2
Length = 213
Score = 30.8 bits (68), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 21/89 (23%), Positives = 44/89 (49%), Gaps = 7/89 (7%)
Query: 92 QEGTLRIQGVQKEDAGFFVCSALSV-AGSTTVRAFLQVTSVEDTPPPIVQVGPSNQTLPL 150
++ +LR+ G++ ED G + C ++ GS +V +L+V + + +V + + +P+
Sbjct: 75 RDASLRMFGLRVEDEGSYTCLFVTFPQGSRSVDIWLRVLAKPQNTAEVQKVQLTGEPVPM 134
Query: 151 HSVAFLPCQAVGS-PPPHIRWYKNGNSLP 178
C + G PP I W+ + +P
Sbjct: 135 AR-----CVSTGGRPPAQITWHSDLGGMP 158
>pdb|3QI9|D Chain D, Crystal Structure Of Mouse Cd1d-Alpha-Phosphotidylinositol
With Mouse Valpha14-Vbeta6 2a3-D Nkt Tcr
Length = 243
Score = 30.8 bits (68), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 39/93 (41%), Gaps = 12/93 (12%)
Query: 95 TLRIQGVQKEDAGFFVCSALSVAGSTTVRAFL----QVTSVEDT----PPPIVQVGPSNQ 146
+L + QK + F+C++ S+ V F ++T VE PP + PS
Sbjct: 75 SLTVTSAQKNEMAVFLCASGSLLDVREV--FFGKGTRLTVVEALKNVFPPEVAVFEPSEA 132
Query: 147 TLPLHSVAFLPCQAVGSPPPHIR--WYKNGNSL 177
+ A L C A G P H+ W+ NG +
Sbjct: 133 EISHTQKATLVCLATGFYPDHVELSWWVNGKEV 165
>pdb|3URO|R Chain R, Poliovirus Receptor Cd155 D1d2
Length = 221
Score = 30.8 bits (68), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 21/89 (23%), Positives = 44/89 (49%), Gaps = 7/89 (7%)
Query: 92 QEGTLRIQGVQKEDAGFFVCSALSV-AGSTTVRAFLQVTSVEDTPPPIVQVGPSNQTLPL 150
++ +LR+ G++ ED G + C ++ GS +V +L+V + + +V + + +P+
Sbjct: 76 RDASLRMFGLRVEDEGSYTCLFVTFPQGSRSVDIWLRVLAKPQNTAEVQKVQLTGEPVPM 135
Query: 151 HSVAFLPCQAVGS-PPPHIRWYKNGNSLP 178
C + G PP I W+ + +P
Sbjct: 136 AR-----CVSTGGRPPAQITWHSDLGGMP 159
>pdb|2R15|A Chain A, Crystal Structure Of The Myomesin Domains 12 And 13
pdb|2R15|B Chain B, Crystal Structure Of The Myomesin Domains 12 And 13
Length = 212
Score = 30.4 bits (67), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 13/26 (50%)
Query: 156 LPCQAVGSPPPHIRWYKNGNSLPPED 181
L C G PPP + W KN +L D
Sbjct: 137 LTCNVWGDPPPEVSWLKNEKALAQTD 162
>pdb|2O26|X Chain X, Structure Of A Class Iii Rtk Signaling Assembly
pdb|2O26|Y Chain Y, Structure Of A Class Iii Rtk Signaling Assembly
pdb|2O26|U Chain U, Structure Of A Class Iii Rtk Signaling Assembly
pdb|2O26|W Chain W, Structure Of A Class Iii Rtk Signaling Assembly
Length = 290
Score = 30.4 bits (67), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 23/43 (53%)
Query: 86 GHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQV 128
G + ++ TL I + +D+G F+C A + GS V L+V
Sbjct: 244 GDFNYERQETLTISSARVDDSGVFMCYANNTFGSANVTTTLKV 286
>pdb|3KXF|E Chain E, Crystal Structure Of Sb27 Tcr In Complex With The
'restriction Triad' Mutant Hla-B3508-13mer
pdb|3KXF|H Chain H, Crystal Structure Of Sb27 Tcr In Complex With The
'restriction Triad' Mutant Hla-B3508-13mer
pdb|3KXF|P Chain P, Crystal Structure Of Sb27 Tcr In Complex With The
'restriction Triad' Mutant Hla-B3508-13mer
pdb|3KXF|O Chain O, Crystal Structure Of Sb27 Tcr In Complex With The
'restriction Triad' Mutant Hla-B3508-13mer
Length = 241
Score = 30.0 bits (66), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 24/95 (25%), Positives = 40/95 (42%), Gaps = 10/95 (10%)
Query: 92 QEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRAF---LQVTSVEDT----PPPIVQVGPS 144
+E +LR++ + C++ +AG + F ++T ED PP + PS
Sbjct: 70 REFSLRLESAAPSQTSVYFCASPGLAGEYE-QYFGPGTRLTVTEDLKNVFPPEVAVFEPS 128
Query: 145 NQTLPLHSVAFLPCQAVGSPPPHIR--WYKNGNSL 177
+ A L C A G P H+ W+ NG +
Sbjct: 129 EAEISHTQKATLVCLATGFYPDHVELSWWVNGKEV 163
>pdb|2AK4|E Chain E, Crystal Structure Of Sb27 Tcr In Complex With Hla-B3508-
13mer Peptide
pdb|2AK4|J Chain J, Crystal Structure Of Sb27 Tcr In Complex With Hla-B3508-
13mer Peptide
pdb|2AK4|P Chain P, Crystal Structure Of Sb27 Tcr In Complex With Hla-B3508-
13mer Peptide
pdb|2AK4|U Chain U, Crystal Structure Of Sb27 Tcr In Complex With Hla-B3508-
13mer Peptide
Length = 245
Score = 30.0 bits (66), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 24/95 (25%), Positives = 40/95 (42%), Gaps = 10/95 (10%)
Query: 92 QEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRAF---LQVTSVEDT----PPPIVQVGPS 144
+E +LR++ + C++ +AG + F ++T ED PP + PS
Sbjct: 74 REFSLRLESAAPSQTSVYFCASPGLAGEYE-QYFGPGTRLTVTEDLKNVFPPEVAVFEPS 132
Query: 145 NQTLPLHSVAFLPCQAVGSPPPHIR--WYKNGNSL 177
+ A L C A G P H+ W+ NG +
Sbjct: 133 EAEISHTQKATLVCLATGFYPDHVELSWWVNGKEV 167
>pdb|2YR3|A Chain A, Solution Structure Of The Fourth Ig-Like Domain From
Myosin Light Chain Kinase, Smooth Muscle
Length = 99
Score = 30.0 bits (66), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 23/92 (25%), Positives = 34/92 (36%), Gaps = 5/92 (5%)
Query: 37 PSFVVRPQDQKVGLNGIASFQCVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTL 96
PSF +D V QC G+P+P + W G + + L
Sbjct: 12 PSFSSVLKDCAVIEGQDFVLQCSVRGTPVPRITWLLNGQPIQYARSTCEAGV-----AEL 66
Query: 97 RIQGVQKEDAGFFVCSALSVAGSTTVRAFLQV 128
IQ ED G + C A + G + A++ V
Sbjct: 67 HIQDALPEDHGTYTCLAENALGQVSCSAWVTV 98
Score = 29.6 bits (65), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 29/58 (50%), Gaps = 2/58 (3%)
Query: 188 SSGSLQIDVLRDDFRAEPKDTRVASGETALLECGPPKGQPEPTLHWKKNGQFIDLESS 245
SSGS ++V F + KD V G+ +L+C +G P P + W NGQ I S
Sbjct: 2 SSGSSGMEV-APSFSSVLKDCAVIEGQDFVLQC-SVRGTPVPRITWLLNGQPIQYARS 57
>pdb|3MFF|B Chain B, 1f1e8hu Tcr
pdb|3MFF|D Chain D, 1f1e8hu Tcr
Length = 242
Score = 29.6 bits (65), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 22/93 (23%), Positives = 38/93 (40%), Gaps = 11/93 (11%)
Query: 95 TLRIQGVQKEDAGFFVCSALSVAGSTTVRAFL----QVTSVEDT----PPPIVQVGPSNQ 146
+L + + + C++ S+AG+ + ++T ED PP + PS
Sbjct: 74 SLILDSAKTNQTSVYFCAS-SLAGTGNYEQYFGPGTRLTVTEDLKNVFPPEVAVFEPSEA 132
Query: 147 TLPLHSVAFLPCQAVGSPPPHIR--WYKNGNSL 177
+ A L C A G P H+ W+ NG +
Sbjct: 133 EISHTQKATLVCLATGFYPDHVELSWWVNGKEV 165
>pdb|3NCM|A Chain A, Neural Cell Adhesion Molecule, Module 2, Nmr, 20
Structures
Length = 92
Score = 29.6 bits (65), Expect = 2.1, Method: Composition-based stats.
Identities = 16/59 (27%), Positives = 26/59 (44%), Gaps = 1/59 (1%)
Query: 201 FRAEPKDTRVASGETALLECGPPKGQPEPTLHWKKNGQFIDLESSKRVSILGDPWFDSR 259
F+ P GE A++ C P PT+ WK G+ + L+ R +L + + R
Sbjct: 4 FKNAPTPQEFKEGEDAVIVCDVVSSLP-PTIIWKHKGRDVILKKDVRFIVLSNNYLQIR 61
Score = 28.9 bits (63), Expect = 3.5, Method: Composition-based stats.
Identities = 19/75 (25%), Positives = 34/75 (45%), Gaps = 5/75 (6%)
Query: 43 PQDQKVGLNGIASFQCVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQ 102
PQ+ K G + + C S P++ W +G V++ + V L+I+G++
Sbjct: 10 PQEFKEGEDAV--IVCDVVSSLPPTIIWKHKGRDVILKKDVRF---IVLSNNYLQIRGIK 64
Query: 103 KEDAGFFVCSALSVA 117
K D G + C +A
Sbjct: 65 KTDEGTYRCEGRILA 79
>pdb|3RY6|C Chain C, Complex Of Fcgammariia (Cd32) And The Fc Of Human Igg1
Length = 167
Score = 29.6 bits (65), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 25/102 (24%), Positives = 40/102 (39%), Gaps = 19/102 (18%)
Query: 156 LPCQAVGSPPPH-IRWYKNGNSLPPEDT-----RINVSSSGS-------------LQIDV 196
L CQ SP I+W+ NGN +P + N + SG + + V
Sbjct: 21 LTCQGARSPESDSIQWFHNGNLIPTHTQPSYRFKANNNDSGEYTCQTGQTSLSDPVHLTV 80
Query: 197 LRDDFRAEPKDTRVASGETALLECGPPKGQPEPTLHWKKNGQ 238
L + + GET +L C K +P + + +NG+
Sbjct: 81 LSEWLVLQTPHLEFQEGETIMLRCHSWKDKPLVKVTFFQNGK 122
>pdb|2V5Y|A Chain A, Crystal Structure Of The Receptor Protein Tyrosine
Phosphatase Mu Ectodomain
Length = 731
Score = 29.6 bits (65), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 22/48 (45%)
Query: 2 ITEVKKSDEGKYQCYVQNMVGERETKPALLTVHAPPSFVVRPQDQKVG 49
+ K D GKY+C ++ G + A L V PP + PQ VG
Sbjct: 227 VVNTTKRDAGKYRCMIRTEGGVGISNYAELVVKEPPVPIAPPQLASVG 274
>pdb|2OCW|A Chain A, Solution Structure Of Human Secretory Component
pdb|3CHN|S Chain S, Solution Structure Of Human Secretory Iga1
pdb|3CM9|S Chain S, Solution Structure Of Human Siga2
Length = 585
Score = 29.6 bits (65), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 29/130 (22%), Positives = 47/130 (36%), Gaps = 21/130 (16%)
Query: 1 MITEVKKSDEGKYQCYVQNMVGERETKPALLTVHAPPSFVVRPQDQKVGLN--------G 52
+I +++ SD G+Y C + + L + P V V +
Sbjct: 188 VINQLRLSDAGQYLCQAGDDSNSNKKNADLQVLKPEPELVYEDLRGSVTFHCALGPEVAN 247
Query: 53 IASFQCVAEGSPLPSVFWTQEGSQ-------VLMFPGNAYGHLHVTQEGTLRIQGVQKED 105
+A F C V G + +L+ P + G V I G++KED
Sbjct: 248 VAKFLCRQSSGENCDVVVNTLGKRAPAFEGRILLNPQDKDGSFSVV------ITGLRKED 301
Query: 106 AGFFVCSALS 115
AG ++C A S
Sbjct: 302 AGRYLCGAHS 311
>pdb|1L6Z|A Chain A, Crystal Structure Of Murine Ceacam1a[1,4]: A Coronavirus
Receptor And Cell Adhesion Molecule In The Cea Family
Length = 216
Score = 29.3 bits (64), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 21/40 (52%)
Query: 2 ITEVKKSDEGKYQCYVQNMVGERETKPALLTVHAPPSFVV 41
I +K+ D G+YQC + N V R + L + PS +V
Sbjct: 167 IDPIKREDAGEYQCEISNPVSVRRSNSIKLDIIFDPSRLV 206
>pdb|3MJ7|B Chain B, Crystal Structure Of The Complex Of Jaml And Coxsackie And
Adenovirus Receptor, Car
Length = 225
Score = 29.3 bits (64), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 31/127 (24%), Positives = 47/127 (37%), Gaps = 4/127 (3%)
Query: 2 ITEVKKSDEGKYQCYVQNMVGERETKPALLTVHAPPSFVVRPQDQKVGLNGIASFQCVAE 61
+T ++ SD G YQC V+ G K LLTV PS D + +C +
Sbjct: 90 VTNLQLSDIGTYQCKVKKAPG-VANKKFLLTVLVKPSGTRCFVDGSEEIGNDFKLKCEPK 148
Query: 62 GSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTT 121
LP F Q+ S P + + ++ E +G + C+ + GS
Sbjct: 149 EGSLPLQFEWQKLSDSQTMPTPWLAEM---TSPVISVKNASSEYSGTYSCTVQNRVGSDQ 205
Query: 122 VRAFLQV 128
L V
Sbjct: 206 CMLRLDV 212
>pdb|3EJJ|X Chain X, Structure Of M-Csf Bound To The First Three Domains Of Fms
Length = 289
Score = 29.3 bits (64), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 34/136 (25%), Positives = 54/136 (39%), Gaps = 11/136 (8%)
Query: 1 MITEVKKSDEGKYQCYVQNMVGERETKPALL-----TVH-APPSFVVRPQDQKVGLNG-I 53
+I + K D Y C + MV RE+ + VH PP + P + V + G
Sbjct: 147 IIRKAKVLDSNTYVC--KTMVNGRESTSTGIWLKVNRVHPEPPQIKLEPS-KLVRIRGEA 203
Query: 54 ASFQCVAEGSPLPSVFWTQEGSQVLMFPGNA-YGHLHVTQEGTLRIQGVQKEDAGFFVCS 112
A C A + + + G L P N+ + + + L + V +DAG + C
Sbjct: 204 AQIVCSATNAEVGFNVILKRGDTKLEIPLNSDFQDNYYKKVRALSLNAVDFQDAGIYSCV 263
Query: 113 ALSVAGSTTVRAFLQV 128
A + G+ T QV
Sbjct: 264 ASNDVGTRTATMNFQV 279
>pdb|3JZ7|A Chain A, Crystal Structure Of The Extracellular Domains Of
Coxsackie & Adenovirus Receptor From Mouse (Mcar)
Length = 214
Score = 29.3 bits (64), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 31/127 (24%), Positives = 47/127 (37%), Gaps = 4/127 (3%)
Query: 2 ITEVKKSDEGKYQCYVQNMVGERETKPALLTVHAPPSFVVRPQDQKVGLNGIASFQCVAE 61
+T ++ SD G YQC V+ G K LLTV PS D + +C +
Sbjct: 88 VTNLQLSDIGTYQCKVKKAPG-VANKKFLLTVLVKPSGTRCFVDGSEEIGNDFKLKCEPK 146
Query: 62 GSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTT 121
LP F Q+ S P + + ++ E +G + C+ + GS
Sbjct: 147 EGSLPLQFEWQKLSDSQTMPTPWLAEM---TSPVISVKNASSEYSGTYSCTVQNRVGSDQ 203
Query: 122 VRAFLQV 128
L V
Sbjct: 204 CMLRLDV 210
>pdb|4EXP|X Chain X, Structure Of Mouse Interleukin-34 In Complex With Mouse
Fms
Length = 283
Score = 29.3 bits (64), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 34/136 (25%), Positives = 54/136 (39%), Gaps = 11/136 (8%)
Query: 1 MITEVKKSDEGKYQCYVQNMVGERETKPALL-----TVH-APPSFVVRPQDQKVGLNG-I 53
+I + K D Y C + MV RE+ + VH PP + P + V + G
Sbjct: 147 IIRKAKVLDSNTYVC--KTMVNGRESTSTGIWLKVNRVHPEPPQIKLEPS-KLVRIRGEA 203
Query: 54 ASFQCVAEGSPLPSVFWTQEGSQVLMFPGNA-YGHLHVTQEGTLRIQGVQKEDAGFFVCS 112
A C A + + + G L P N+ + + + L + V +DAG + C
Sbjct: 204 AQIVCSATNAEVGFNVILKRGDTKLEIPLNSDFQDNYYKKVRALSLNAVDFQDAGIYSCV 263
Query: 113 ALSVAGSTTVRAFLQV 128
A + G+ T QV
Sbjct: 264 ASNDVGTRTATMNFQV 279
>pdb|3NH7|L Chain L, Crystal Structure Of The Neutralizing Fab Fragment Abd1556
Bound To The Bmp Type I Receptor Ia
pdb|3NH7|M Chain M, Crystal Structure Of The Neutralizing Fab Fragment Abd1556
Bound To The Bmp Type I Receptor Ia
pdb|3NH7|N Chain N, Crystal Structure Of The Neutralizing Fab Fragment Abd1556
Bound To The Bmp Type I Receptor Ia
pdb|3NH7|O Chain O, Crystal Structure Of The Neutralizing Fab Fragment Abd1556
Bound To The Bmp Type I Receptor Ia
Length = 213
Score = 29.3 bits (64), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 17/29 (58%)
Query: 94 GTLRIQGVQKEDAGFFVCSALSVAGSTTV 122
TL I G Q ED + CS +++G+ TV
Sbjct: 70 ATLTISGTQAEDEADYYCSTFTMSGNGTV 98
>pdb|3D5O|F Chain F, Structural Recognition And Functional Activation Of Fcrr
By Innate Pentraxins
Length = 177
Score = 28.9 bits (63), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 25/102 (24%), Positives = 40/102 (39%), Gaps = 19/102 (18%)
Query: 156 LPCQAVGSPPPH-IRWYKNGNSLPPEDT-----RINVSSSGS-------------LQIDV 196
L CQ SP I+W+ NGN +P + N + SG + + V
Sbjct: 24 LTCQGARSPESDSIQWFHNGNLIPTHTQPSYRFKANNNDSGEYTCQTGQTSLSDPVHLTV 83
Query: 197 LRDDFRAEPKDTRVASGETALLECGPPKGQPEPTLHWKKNGQ 238
L + + GET +L C K +P + + +NG+
Sbjct: 84 LSEWLVLQTPHLEFQEGETIMLRCHSWKDKPLVKVTFFQNGK 125
>pdb|3TJH|D Chain D, 42f3-P3a1H2-Ld Complex
Length = 254
Score = 28.9 bits (63), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 24/102 (23%), Positives = 38/102 (37%), Gaps = 7/102 (6%)
Query: 83 NAYGHLHVTQEGT-LRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVTSVEDT----PPP 137
+ Y TQE L ++ + C++ G ++T +ED PP
Sbjct: 65 DGYKATRTTQEDFFLLLELASPSQTSLYFCASSDAPGQLYFGEGSKLTVLEDLKNVFPPE 124
Query: 138 IVQVGPSNQTLPLHSVAFLPCQAVGSPPPHIR--WYKNGNSL 177
+ PS + A L C A G P H+ W+ NG +
Sbjct: 125 VAVFEPSEAEISHTQKATLVCLATGFYPDHVELSWWVNGKEV 166
>pdb|3RY5|A Chain A, Three-Dimensional Structure Of Glycosylated Fcgammariia
(High- Responder Polymorphism)
Length = 170
Score = 28.9 bits (63), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 25/102 (24%), Positives = 40/102 (39%), Gaps = 19/102 (18%)
Query: 156 LPCQAVGSPPPH-IRWYKNGNSLPPEDT-----RINVSSSGS-------------LQIDV 196
L CQ SP I+W+ NGN +P + N + SG + + V
Sbjct: 24 LTCQGARSPESDSIQWFHNGNLIPTHTQPSYRFKANNNDSGEYTCQTGQTSLSDPVHLTV 83
Query: 197 LRDDFRAEPKDTRVASGETALLECGPPKGQPEPTLHWKKNGQ 238
L + + GET +L C K +P + + +NG+
Sbjct: 84 LSEWLVLQTPHLEFQEGETIMLRCHSWKDKPLVKVTFFQNGK 125
>pdb|1J8H|E Chain E, Crystal Structure Of A Complex Of A Human AlphaBETA-T Cell
Receptor, Influenza Ha Antigen Peptide, And Mhc Class Ii
Molecule, Hla-Dr4
Length = 246
Score = 28.9 bits (63), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 22/91 (24%), Positives = 37/91 (40%), Gaps = 8/91 (8%)
Query: 95 TLRIQGVQKEDAGFFVCSALSVA--GSTTVRAFLQVTSVEDT----PPPIVQVGPSNQTL 148
+L ++ ++C++ S T + ++T VED PP + PS +
Sbjct: 74 SLILESASTNQTSMYLCASSSTGLPYGYTFGSGTRLTVVEDLNKVFPPEVAVFEPSEAEI 133
Query: 149 PLHSVAFLPCQAVGSPPPHIR--WYKNGNSL 177
A L C A G P H+ W+ NG +
Sbjct: 134 SHTQKATLVCLATGFFPDHVELSWWVNGKEV 164
>pdb|1FYT|E Chain E, Crystal Structure Of A Complex Of A Human AlphaBETA-T Cell
Receptor, Influenza Ha Antigen Peptide, And Mhc Class Ii
Molecule, Hla-Dr1
Length = 245
Score = 28.9 bits (63), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 22/91 (24%), Positives = 37/91 (40%), Gaps = 8/91 (8%)
Query: 95 TLRIQGVQKEDAGFFVCSALSVA--GSTTVRAFLQVTSVEDT----PPPIVQVGPSNQTL 148
+L ++ ++C++ S T + ++T VED PP + PS +
Sbjct: 73 SLILESASTNQTSMYLCASSSTGLPYGYTFGSGTRLTVVEDLNKVFPPEVAVFEPSEAEI 132
Query: 149 PLHSVAFLPCQAVGSPPPHIR--WYKNGNSL 177
A L C A G P H+ W+ NG +
Sbjct: 133 SHTQKATLVCLATGFFPDHVELSWWVNGKEV 163
>pdb|2F53|E Chain E, Directed Evolution Of Human T-Cell Receptor Cdr2 Residues
By Phage Display Dramatically Enhances Affinity For
Cognate Peptide-Mhc Without Apparent Cross-Reactivity
Length = 243
Score = 28.9 bits (63), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 25/97 (25%), Positives = 40/97 (41%), Gaps = 10/97 (10%)
Query: 90 VTQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRAF---LQVTSVEDT----PPPIVQVG 142
T++ LR+ + C++ S G+T F ++T +ED PP +
Sbjct: 70 TTEDFPLRLLSAAPSQTSVYFCAS-SYVGNTGELFFGEGSRLTVLEDLKNVFPPEVAVFE 128
Query: 143 PSNQTLPLHSVAFLPCQAVGSPPPHIR--WYKNGNSL 177
PS + A L C A G P H+ W+ NG +
Sbjct: 129 PSEAEISHTQKATLVCLATGFYPDHVELSWWVNGKEV 165
>pdb|2BNU|B Chain B, Structural And Kinetic Basis For Heightened Immunogenicity
Of T Cell Vaccines
pdb|2BNQ|E Chain E, Structural And Kinetic Basis For Heightened Immunogenicity
Of T Cell Vaccines
pdb|2BNR|E Chain E, Structural And Kinetic Basis For Heightened Immunogenicity
Of T Cell Vaccines
pdb|2F54|E Chain E, Directed Evolution Of Human T Cell Receptor Cdr2 Residues
By Phage Display Dramatically Enhances Affinity For
Cognate Peptide-Mhc Without Increasing Apparent
Cross-Reactivity
pdb|2F54|L Chain L, Directed Evolution Of Human T Cell Receptor Cdr2 Residues
By Phage Display Dramatically Enhances Affinity For
Cognate Peptide-Mhc Without Increasing Apparent
Cross-Reactivity
Length = 241
Score = 28.9 bits (63), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 25/97 (25%), Positives = 40/97 (41%), Gaps = 10/97 (10%)
Query: 90 VTQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRAF---LQVTSVEDT----PPPIVQVG 142
T++ LR+ + C++ S G+T F ++T +ED PP +
Sbjct: 68 TTEDFPLRLLSAAPSQTSVYFCAS-SYVGNTGELFFGEGSRLTVLEDLKNVFPPEVAVFE 126
Query: 143 PSNQTLPLHSVAFLPCQAVGSPPPHIR--WYKNGNSL 177
PS + A L C A G P H+ W+ NG +
Sbjct: 127 PSEAEISHTQKATLVCLATGFYPDHVELSWWVNGKEV 163
>pdb|1WWC|A Chain A, Nt3 Binding Domain Of Human Trkc Receptor
Length = 118
Score = 28.9 bits (63), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 16/27 (59%), Gaps = 2/27 (7%)
Query: 224 KGQPEPTLHWKKNGQFIDLESSKRVSI 250
+G P PTLHW NGQ L SK + +
Sbjct: 30 RGNPPPTLHWLHNGQ--PLRESKIIHV 54
>pdb|3TFK|D Chain D, 42f3-P4b10H2-Ld
pdb|3TPU|B Chain B, 42f3 P5e8H2-Ld Complex
pdb|3TPU|D Chain D, 42f3 P5e8H2-Ld Complex
pdb|3TPU|H Chain H, 42f3 P5e8H2-Ld Complex
pdb|3TPU|N Chain N, 42f3 P5e8H2-Ld Complex
Length = 243
Score = 28.9 bits (63), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 24/102 (23%), Positives = 38/102 (37%), Gaps = 7/102 (6%)
Query: 83 NAYGHLHVTQEGT-LRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVTSVEDT----PPP 137
+ Y TQE L ++ + C++ G ++T +ED PP
Sbjct: 64 DGYKATRTTQEDFFLLLELASPSQTSLYFCASSDAPGQLYFGEGSKLTVLEDLKNVFPPE 123
Query: 138 IVQVGPSNQTLPLHSVAFLPCQAVGSPPPHIR--WYKNGNSL 177
+ PS + A L C A G P H+ W+ NG +
Sbjct: 124 VAVFEPSEAEISHTQKATLVCLATGFYPDHVELSWWVNGKEV 165
>pdb|2CDE|B Chain B, Structure And Binding Kinetics Of Three Different Human
Cd1d-Alpha-Galactosylceramide Specific T Cell Receptors
- Inkt-Tcr
pdb|2CDE|D Chain D, Structure And Binding Kinetics Of Three Different Human
Cd1d-Alpha-Galactosylceramide Specific T Cell Receptors
- Inkt-Tcr
pdb|2CDE|F Chain F, Structure And Binding Kinetics Of Three Different Human
Cd1d-Alpha-Galactosylceramide Specific T Cell Receptors
- Inkt-Tcr
Length = 244
Score = 28.9 bits (63), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 22/96 (22%), Positives = 39/96 (40%), Gaps = 9/96 (9%)
Query: 91 TQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRAF---LQVTSVEDT----PPPIVQVGP 143
T+ L ++ + ++C++ G+ + F ++T ED PP + P
Sbjct: 71 TEHFPLTLESARPSHTSQYLCASSENIGTAYEQYFGPGTRLTVTEDLKNVFPPEVAVFEP 130
Query: 144 SNQTLPLHSVAFLPCQAVGSPPPHIR--WYKNGNSL 177
S + A L C A G P H+ W+ NG +
Sbjct: 131 SEAEISHTQKATLVCLATGFYPDHVELSWWVNGKEV 166
>pdb|1FCG|A Chain A, Ectodomain Of Human Fc Gamma Receptor, Fcgriia
Length = 174
Score = 28.9 bits (63), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 25/102 (24%), Positives = 40/102 (39%), Gaps = 19/102 (18%)
Query: 156 LPCQAVGSPPPH-IRWYKNGNSLPPEDT-----RINVSSSGS-------------LQIDV 196
L CQ SP I+W+ NGN +P + N + SG + + V
Sbjct: 27 LTCQGARSPESDSIQWFHNGNLIPTHTQPSYRFKANNNDSGEYTCQTGQTSLSDPVHLTV 86
Query: 197 LRDDFRAEPKDTRVASGETALLECGPPKGQPEPTLHWKKNGQ 238
L + + GET +L C K +P + + +NG+
Sbjct: 87 LFEWLVLQTPHLEFQEGETIMLRCHSWKDKPLVKVTFFQNGK 128
>pdb|4GKZ|B Chain B, Ha1.7, A Mhc Class Ii Restricted Tcr Specific For
Haemagglutinin
Length = 241
Score = 28.9 bits (63), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 22/91 (24%), Positives = 37/91 (40%), Gaps = 8/91 (8%)
Query: 95 TLRIQGVQKEDAGFFVCSALSVA--GSTTVRAFLQVTSVEDT----PPPIVQVGPSNQTL 148
+L ++ ++C++ S T + ++T VED PP + PS +
Sbjct: 74 SLILESASTNQTSMYLCASSSTGLPYGYTFGSGTRLTVVEDLNKVFPPEVAVFEPSEAEI 133
Query: 149 PLHSVAFLPCQAVGSPPPHIR--WYKNGNSL 177
A L C A G P H+ W+ NG +
Sbjct: 134 SHTQKATLVCLATGFFPDHVELSWWVNGKEV 164
>pdb|1H9V|A Chain A, Human Fc-Gamma-Receptor Iia (Fcgriia), Monoclinic
Length = 172
Score = 28.5 bits (62), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 25/102 (24%), Positives = 40/102 (39%), Gaps = 19/102 (18%)
Query: 156 LPCQAVGSPPPH-IRWYKNGNSLPPEDT-----RINVSSSGS-------------LQIDV 196
L CQ SP I+W+ NGN +P + N + SG + + V
Sbjct: 24 LTCQGARSPESDSIQWFHNGNLIPTHTQPSYRFKANNNDSGEYTCQTGQTSLSDPVHLTV 83
Query: 197 LRDDFRAEPKDTRVASGETALLECGPPKGQPEPTLHWKKNGQ 238
L + + GET +L C K +P + + +NG+
Sbjct: 84 LSEWLVLQTPHLEFQEGETIMLRCHSWKDKPLVKVTFFQNGK 125
>pdb|3SE9|L Chain L, Crystal Structure Of Broadly And Potently Neutralizing
Antibody Vrc- Pg04 In Complex With Hiv-1 Gp120
pdb|4I3R|L Chain L, Crystal Structure Of The Outer Domain Of Hiv-1 Gp120 In
Complex With Vrc-pg04 Space Group P3221
pdb|4I3S|L Chain L, Crystal Structure Of The Outer Domain Of Hiv-1 Gp120 In
Complex With Vrc-pg04 Space Group P21
Length = 208
Score = 28.5 bits (62), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 17/58 (29%), Positives = 27/58 (46%), Gaps = 1/58 (1%)
Query: 2 ITEVKKSDEGKYQCYVQNMVGERETKPALLTVHAPPSFVVRPQDQKVGLNGIASFQCV 59
IT ++ D +Y C G+ TV AP F+ P D+++ +G AS C+
Sbjct: 73 ITRMEPEDFARYYCQQLEFFGQGTRLEIRRTVAAPSVFIFPPSDEQLK-SGTASVVCL 129
>pdb|3RY4|A Chain A, 1.5 Angstrom Resolution Structure Of Glycosylated
Fcgammariia (Low- Responder Polymorphism)
Length = 170
Score = 28.5 bits (62), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 25/102 (24%), Positives = 40/102 (39%), Gaps = 19/102 (18%)
Query: 156 LPCQAVGSPPPH-IRWYKNGNSLPPEDT-----RINVSSSGS-------------LQIDV 196
L CQ SP I+W+ NGN +P + N + SG + + V
Sbjct: 24 LTCQGARSPESDSIQWFHNGNLIPTHTQPSYRFKANNNDSGEYTCQTGQTSLSDPVHLTV 83
Query: 197 LRDDFRAEPKDTRVASGETALLECGPPKGQPEPTLHWKKNGQ 238
L + + GET +L C K +P + + +NG+
Sbjct: 84 LFEWLVLQTPHLEFQEGETIMLRCHSWKDKPLVKVTFFQNGK 125
>pdb|3MBE|D Chain D, Tcr 21.30 In Complex With Mhc Class Ii I-Ag7hel(11-27)
pdb|3MBE|H Chain H, Tcr 21.30 In Complex With Mhc Class Ii I-Ag7hel(11-27)
Length = 259
Score = 28.1 bits (61), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 35/81 (43%), Gaps = 7/81 (8%)
Query: 104 EDAGFFVCSALSVAGSTTVRAF-LQVTSVED----TPPPIVQVGPSNQTLPLHSVAFLPC 158
+ A +F S+ AG+T ++ VED TPP + PS + A L C
Sbjct: 85 QTAVYFCASSWDRAGNTLYFGEGSRLIVVEDLRNVTPPKVSLFEPSKAEIANKQKATLVC 144
Query: 159 QAVGSPPPHIR--WYKNGNSL 177
A G P H+ W+ NG +
Sbjct: 145 LARGFFPDHVELSWWVNGKEV 165
>pdb|1BD2|E Chain E, Complex Between Human T-Cell Receptor B7, Viral Peptide
(Tax) And Mhc Class I Molecule Hla-A 0201
Length = 244
Score = 28.1 bits (61), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 23/97 (23%), Positives = 37/97 (38%), Gaps = 9/97 (9%)
Query: 90 VTQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRAF---LQVTSVEDT----PPPIVQVG 142
T++ LR+ + C++ G + F ++T ED PP +
Sbjct: 70 TTEDFPLRLLSAAPSQTSVYFCASSYPGGGFYEQYFGPGTRLTVTEDLKNVFPPEVAVFE 129
Query: 143 PSNQTLPLHSVAFLPCQAVGSPPPHIR--WYKNGNSL 177
PS + A L C A G P H+ W+ NG +
Sbjct: 130 PSEAEISHTQKATLVCLATGFYPDHVELSWWVNGKEV 166
>pdb|1JCK|A Chain A, T-Cell Receptor Beta Chain Complexed With Sec3
Superantigen
pdb|1JCK|C Chain C, T-Cell Receptor Beta Chain Complexed With Sec3
Superantigen
pdb|1SBB|A Chain A, T-Cell Receptor Beta Chain Complexed With Superantigen Seb
pdb|1SBB|C Chain C, T-Cell Receptor Beta Chain Complexed With Superantigen Seb
pdb|1L0X|A Chain A, Tcr Beta Chain Complexed With Streptococcal Superantigen
Spea
pdb|1L0X|C Chain C, Tcr Beta Chain Complexed With Streptococcal Superantigen
Spea
pdb|1BEC|A Chain A, Beta Chain Of A T Cell Antigen Receptor
Length = 238
Score = 28.1 bits (61), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 34/78 (43%), Gaps = 9/78 (11%)
Query: 109 FVCSALSVAGSTTVRAF---LQVTSVED----TPPPIVQVGPSNQTLPLHSVAFLPCQAV 161
+ C++ GS + F ++T +ED TPP + PS + A L C A
Sbjct: 87 YFCASGGGRGSYAEQFFGPGTRLTVLEDLRQVTPPKVSLFEPSKAEIANKQKATLVCLAR 146
Query: 162 GSPPPHIR--WYKNGNSL 177
G P H+ W+ NG +
Sbjct: 147 GFFPDHVELSWWVNGKEV 164
>pdb|4HWU|A Chain A, Crystal Structure Of The Ig-C2 Type 1 Domain From Mouse
Fibroblast Growth Factor Receptor 2 (Fgfr2)
[nysgrc-005912]
pdb|4HWU|B Chain B, Crystal Structure Of The Ig-C2 Type 1 Domain From Mouse
Fibroblast Growth Factor Receptor 2 (Fgfr2)
[nysgrc-005912]
Length = 95
Score = 28.1 bits (61), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 25/98 (25%), Positives = 42/98 (42%), Gaps = 15/98 (15%)
Query: 36 PPSFVVRPQDQKVGLNGIASFQCVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGT 95
P ++VV P + QC+ + + + S WT++G V + P N V
Sbjct: 8 PEAYVVAPGES-------LELQCMLKDAAVIS--WTKDG--VHLGPNNR----TVLIGEY 52
Query: 96 LRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVTSVED 133
L+I+G D+G + C+A S T + VT +
Sbjct: 53 LQIKGATPRDSGLYACTAARTVDSETWIFMVNVTDAAE 90
>pdb|3HE6|D Chain D, Crystal Structure Of Mouse Cd1d-Alpha-Galactosylceramide
With Mouse Valpha14-Vbeta8.2 Nkt Tcr
pdb|3ARB|D Chain D, Ternary Crystal Structure Of The Nkt
Tcr-Cd1d-Alpha-Galactosylceramide Analogue-Och
pdb|3ARD|D Chain D, Ternary Crystal Structure Of The Mouse Nkt
Tcr-Cd1d-3'deoxy-Alpha- Galactosylceramide
pdb|3ARE|D Chain D, Ternary Crystal Structure Of The Mouse Nkt
Tcr-Cd1d-4'deoxy-Alpha- Galactosylceramide
pdb|3ARF|D Chain D, Ternary Crystal Structure Of The Mouse Nkt Tcr-Cd1d-C20:2
pdb|3ARG|D Chain D, Ternary Crystal Structure Of The Mouse Nkt Tcr-Cd1d-Alpha-
Glucosylceramide(C20:2)
pdb|3TN0|D Chain D, Structure Of Mouse Va14vb8.2nkt Tcr-Mouse
Cd1d-A-C-Galactosylceramide Complex
Length = 244
Score = 28.1 bits (61), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 20/78 (25%), Positives = 33/78 (42%), Gaps = 9/78 (11%)
Query: 109 FVCSALSVAGSTTVRAF---LQVTSVEDT----PPPIVQVGPSNQTLPLHSVAFLPCQAV 161
+ C++ G+ + F ++T +ED PP + PS + A L C A
Sbjct: 89 YFCASGDAGGNYAEQFFGPGTRLTVLEDLKNVFPPEVAVFEPSEAEISHTQKATLVCLAT 148
Query: 162 GSPPPHIR--WYKNGNSL 177
G P H+ W+ NG +
Sbjct: 149 GFYPDHVELSWWVNGKEV 166
>pdb|1Z7Z|I Chain I, Cryo-Em Structure Of Human Coxsackievirus A21 Complexed
With Five Domain Icam-1kilifi
Length = 450
Score = 28.1 bits (61), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 35/127 (27%), Positives = 54/127 (42%), Gaps = 16/127 (12%)
Query: 64 PLPSVFWTQ----EGSQVLMFPGNAYGHLHVTQEGT----------LRIQGVQKEDAGFF 109
P P+V T+ EG++V + A+ VT G L ++ +++ F
Sbjct: 284 PAPNVILTKPEVSEGTEVTV-KCEAHPRAKVTLNGVPAQPLGPRAQLLLKATPEDNGRSF 342
Query: 110 VCSA-LSVAGSTTVRAFLQVTSVEDTPPPIVQVGPSNQTLPLHSVAFLPCQAVGSPPPHI 168
CSA L VAG + + V P + P N T P +S CQA G+P P +
Sbjct: 343 SCSATLEVAGQLIHKNQTRELRVLYGPRLDERDCPGNWTWPENSQQTPMCQAWGNPLPEL 402
Query: 169 RWYKNGN 175
+ K+G
Sbjct: 403 KCLKDGT 409
>pdb|1L0Y|A Chain A, T Cell Receptor Beta Chain Complexed With Superantigen
Spea Soaked With Zinc
pdb|1L0Y|C Chain C, T Cell Receptor Beta Chain Complexed With Superantigen
Spea Soaked With Zinc
Length = 236
Score = 28.1 bits (61), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 34/78 (43%), Gaps = 9/78 (11%)
Query: 109 FVCSALSVAGSTTVRAF---LQVTSVED----TPPPIVQVGPSNQTLPLHSVAFLPCQAV 161
+ C++ GS + F ++T +ED TPP + PS + A L C A
Sbjct: 87 YFCASGGGRGSYAEQFFGPGTRLTVLEDLRQVTPPKVSLFEPSKAEIANKQKATLVCLAR 146
Query: 162 GSPPPHIR--WYKNGNSL 177
G P H+ W+ NG +
Sbjct: 147 GFFPDHVELSWWVNGKEV 164
>pdb|2IAL|B Chain B, Structural Basis For Recognition Of Mutant Self By A
Tumor- Specific, Mhc Class Ii-Restricted Tcr
pdb|2IAL|D Chain D, Structural Basis For Recognition Of Mutant Self By A
Tumor- Specific, Mhc Class Ii-Restricted Tcr
pdb|2IAM|D Chain D, Structural Basis For Recognition Of Mutant Self By A
Tumor- Specific, Mhc Class Ii-Restricted Tcr
pdb|2IAN|E Chain E, Structural Basis For Recognition Of Mutant Self By A
Tumor- Specific, Mhc Class Ii-Restricted Tcr
pdb|2IAN|J Chain J, Structural Basis For Recognition Of Mutant Self By A
Tumor- Specific, Mhc Class Ii-Restricted Tcr
pdb|2IAN|O Chain O, Structural Basis For Recognition Of Mutant Self By A
Tumor- Specific, Mhc Class Ii-Restricted Tcr
pdb|2IAN|T Chain T, Structural Basis For Recognition Of Mutant Self By A
Tumor- Specific, Mhc Class Ii-Restricted Tcr
Length = 240
Score = 28.1 bits (61), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 23/94 (24%), Positives = 38/94 (40%), Gaps = 7/94 (7%)
Query: 90 VTQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVTSVEDT----PPPIVQVGPSN 145
T++ LR++ + C++ + G+ +T VED PP + PS
Sbjct: 70 TTEDFPLRLELAAPSQTSVYFCAS-TYHGTGYFGEGSWLTVVEDLNKVFPPEVAVFEPSE 128
Query: 146 QTLPLHSVAFLPCQAVGSPPPHIR--WYKNGNSL 177
+ A L C A G P H+ W+ NG +
Sbjct: 129 AEISHTQKATLVCLATGFFPDHVELSWWVNGKEV 162
>pdb|2OZ4|A Chain A, Structural Plasticity In Igsf Domain 4 Of Icam-1 Mediates
Cell Surface Dimerization
Length = 265
Score = 28.1 bits (61), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 35/127 (27%), Positives = 54/127 (42%), Gaps = 16/127 (12%)
Query: 64 PLPSVFWTQ----EGSQVLMFPGNAYGHLHVTQEGT----------LRIQGVQKEDAGFF 109
P P+V T+ EG++V + A+ VT G L ++ +++ F
Sbjct: 99 PAPNVILTKPEVSEGTEVTV-KCEAHPRAKVTLNGVPAQPLGPRAQLLLKATPEDNGRSF 157
Query: 110 VCSA-LSVAGSTTVRAFLQVTSVEDTPPPIVQVGPSNQTLPLHSVAFLPCQAVGSPPPHI 168
CSA L VAG + + V P + P N T P +S CQA G+P P +
Sbjct: 158 SCSATLEVAGQLIHKNQTRELRVLYGPRLDERDCPGNWTWPENSQQTPMCQAWGNPLPEL 217
Query: 169 RWYKNGN 175
+ K+G
Sbjct: 218 KCLKDGT 224
>pdb|1P53|A Chain A, The Crystal Structure Of Icam-1 D3-D5 Fragment
pdb|1P53|B Chain B, The Crystal Structure Of Icam-1 D3-D5 Fragment
Length = 266
Score = 28.1 bits (61), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 35/127 (27%), Positives = 54/127 (42%), Gaps = 16/127 (12%)
Query: 64 PLPSVFWTQ----EGSQVLMFPGNAYGHLHVTQEGT----------LRIQGVQKEDAGFF 109
P P+V T+ EG++V + A+ VT G L ++ +++ F
Sbjct: 100 PAPNVILTKPEVSEGTEVTV-KCEAHPRAKVTLNGVPAQPLGPRAQLLLKATPEDNGRSF 158
Query: 110 VCSA-LSVAGSTTVRAFLQVTSVEDTPPPIVQVGPSNQTLPLHSVAFLPCQAVGSPPPHI 168
CSA L VAG + + V P + P N T P +S CQA G+P P +
Sbjct: 159 SCSATLEVAGQLIHKNQTRELRVLYGPRLDERDCPGNWTWPENSQQTPMCQAWGNPLPEL 218
Query: 169 RWYKNGN 175
+ K+G
Sbjct: 219 KCLKDGT 225
>pdb|3C5Z|B Chain B, Crystal Structure Of Mouse Mhc Class Ii I-Ab3K PEPTIDE
COMPLEXED WITH Mouse Tcr B3k506
pdb|3C5Z|F Chain F, Crystal Structure Of Mouse Mhc Class Ii I-Ab3K PEPTIDE
COMPLEXED WITH Mouse Tcr B3k506
Length = 240
Score = 27.7 bits (60), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 34/76 (44%), Gaps = 7/76 (9%)
Query: 109 FVCSALSVAGSTTV----RAFLQVTSVEDTPPPIVQV-GPSNQTLPLHSVAFLPCQAVGS 163
+ C+++ +G+T + V +++ PP V V PS + A L C A G
Sbjct: 87 YFCASIDSSGNTLYFGEGSRLIVVEDLKNVFPPEVAVFEPSEAEISHTQKATLVCLATGF 146
Query: 164 PPPHIR--WYKNGNSL 177
P H+ W+ NG +
Sbjct: 147 YPDHVELSWWVNGKEV 162
>pdb|2VAJ|A Chain A, Crystal Structure Of Ncam2 Ig1 (I4122 Cell Unit)
Length = 93
Score = 27.7 bits (60), Expect = 7.8, Method: Composition-based stats.
Identities = 19/68 (27%), Positives = 29/68 (42%), Gaps = 8/68 (11%)
Query: 56 FQCVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGT---LRIQGVQKEDAGFFVCS 112
F C A G P ++ +G +++ + + V +EG L I EDAG + C
Sbjct: 20 FTCTAIGEPESIDWYNPQGEKII-----STQRVVVQKEGVRSRLTIYNANIEDAGIYRCQ 74
Query: 113 ALSVAGST 120
A G T
Sbjct: 75 ATDAKGQT 82
>pdb|1QRN|E Chain E, Crystal Structure Of Human A6 Tcr Complexed With Hla-A2
Bound To Altered Htlv-1 Tax Peptide P6a
Length = 243
Score = 27.7 bits (60), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 33/79 (41%), Gaps = 9/79 (11%)
Query: 108 FFVCSALSVAGSTTVRAF---LQVTSVEDT----PPPIVQVGPSNQTLPLHSVAFLPCQA 160
+F S +AG + F ++T ED PP + PS + + A L C A
Sbjct: 87 YFCASRPGLAGGRPEQYFGPGTRLTVTEDLKNVFPPEVAVFEPSAEEISHTQKATLVCLA 146
Query: 161 VGSPPPHIR--WYKNGNSL 177
G P H+ W+ NG +
Sbjct: 147 TGFYPDHVELSWWVNGKEV 165
>pdb|2CDG|B Chain B, Structure And Binding Kinetics Of Three Different Human
Cd1d-Alpha-Galactosylceramide-Specific T Cell Receptors
(Tcr 5b)
Length = 244
Score = 27.7 bits (60), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 25/57 (43%), Gaps = 6/57 (10%)
Query: 127 QVTSVEDT----PPPIVQVGPSNQTLPLHSVAFLPCQAVGSPPPHIR--WYKNGNSL 177
++T VED PP + PS + A L C A G P H+ W+ NG +
Sbjct: 110 RLTVVEDLNKVFPPEVAVFEPSEAEISHTQKATLVCLATGFYPDHVELSWWVNGKEV 166
>pdb|2EYR|B Chain B, A Structural Basis For Selection And Cross-species
Reactivity Of The Semi-invariant Nkt Cell Receptor In
Cd1d/glycolipid Recognition
Length = 241
Score = 27.7 bits (60), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 24/96 (25%), Positives = 40/96 (41%), Gaps = 10/96 (10%)
Query: 91 TQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRAF---LQVTSVEDT----PPPIVQVGP 143
T+ L ++ + ++C++ S GS + F ++T ED PP + P
Sbjct: 69 TEHFPLTLESARPSHTSQYLCASTSRRGSYE-QYFGPGTRLTVTEDLKNVFPPEVAVFEP 127
Query: 144 SNQTLPLHSVAFLPCQAVGSPPPHIR--WYKNGNSL 177
S + A L C A G P H+ W+ NG +
Sbjct: 128 SEAEISHTQKATLVCLATGFYPDHVELSWWVNGKEV 163
>pdb|2P5W|E Chain E, Crystal Structures Of High Affinity Human T-Cell Receptors
Bound To Pmhc Reveal Native Diagonal Binding Geometry
Length = 243
Score = 27.7 bits (60), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 37/91 (40%), Gaps = 10/91 (10%)
Query: 96 LRIQGVQKEDAGFFVCSALSVAGSTTVRAF---LQVTSVEDT----PPPIVQVGPSNQTL 148
LR+ + C++ S G+T F ++T +ED PP + PS +
Sbjct: 75 LRLLSAAPSQTSVYFCAS-SYLGNTGELFFGEGSRLTVLEDLKNVFPPEVAVFEPSEAEI 133
Query: 149 PLHSVAFLPCQAVGSPPPHIR--WYKNGNSL 177
A L C A G P H+ W+ NG +
Sbjct: 134 SHTQKATLVCLATGFYPDHVELSWWVNGKEV 164
>pdb|1V7M|H Chain H, Human Thrombopoietin Functional Domain Complexed To
Neutralizing Antibody Tn1 Fab
pdb|1V7M|I Chain I, Human Thrombopoietin Functional Domain Complexed To
Neutralizing Antibody Tn1 Fab
pdb|1V7N|H Chain H, Human Thrombopoietin Functional Domain Complexed To
Neutralizing Antibody Tn1 Fab
pdb|1V7N|I Chain I, Human Thrombopoietin Functional Domain Complexed To
Neutralizing Antibody Tn1 Fab
pdb|1V7N|J Chain J, Human Thrombopoietin Functional Domain Complexed To
Neutralizing Antibody Tn1 Fab
pdb|1V7N|K Chain K, Human Thrombopoietin Functional Domain Complexed To
Neutralizing Antibody Tn1 Fab
pdb|2ZKH|H Chain H, Human Thrombopoietin Neutralizing Antibody Tn1 Fab
Length = 217
Score = 27.7 bits (60), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 38/84 (45%), Gaps = 6/84 (7%)
Query: 96 LRIQGVQKEDAGFFVCSALSVA--GSTTVRAFLQVTSVEDTPPPIVQVGPSNQTLPLHSV 153
L++ ++ ED G + CS S G T+ + V++ + TPP + + P + +S+
Sbjct: 83 LQMNSLRAEDTGIYYCSGWSFLYWGQGTL---VTVSAAKTTPPSVYPLAPGSAA-QTNSM 138
Query: 154 AFLPCQAVGSPPPHIRWYKNGNSL 177
L C G P + N SL
Sbjct: 139 VTLGCLVKGYFPEPVTVTWNSGSL 162
>pdb|2P5E|E Chain E, Crystal Structures Of High Affinity Human T-Cell Receptors
Bound To Pmhc Reveal Native Diagonal Binding Geometry
Length = 242
Score = 27.7 bits (60), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 37/91 (40%), Gaps = 10/91 (10%)
Query: 96 LRIQGVQKEDAGFFVCSALSVAGSTTVRAF---LQVTSVEDT----PPPIVQVGPSNQTL 148
LR+ + C++ S G+T F ++T +ED PP + PS +
Sbjct: 74 LRLLSAAPSQTSVYFCAS-SYLGNTGELFFGEGSRLTVLEDLKNVFPPEVAVFEPSEAEI 132
Query: 149 PLHSVAFLPCQAVGSPPPHIR--WYKNGNSL 177
A L C A G P H+ W+ NG +
Sbjct: 133 SHTQKATLVCLATGFYPDHVELSWWVNGKEV 163
>pdb|2PYE|E Chain E, Crystal Structures Of High Affinity Human T-Cell Receptors
Bound To Pmhc Revealnative Diagonal Binding Geometry Tcr
Clone C5c1 Complexed With Mhc
Length = 242
Score = 27.3 bits (59), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 37/91 (40%), Gaps = 10/91 (10%)
Query: 96 LRIQGVQKEDAGFFVCSALSVAGSTTVRAF---LQVTSVEDT----PPPIVQVGPSNQTL 148
LR+ + C++ S G+T F ++T +ED PP + PS +
Sbjct: 75 LRLLSAAPSQTSVYFCAS-SYLGNTGELFFGEGSRLTVLEDLKNVFPPEVAVFEPSEAEI 133
Query: 149 PLHSVAFLPCQAVGSPPPHIR--WYKNGNSL 177
A L C A G P H+ W+ NG +
Sbjct: 134 SHTQKATLVCLATGFYPDHVELSWWVNGKEV 164
>pdb|2PYF|B Chain B, Crystal Structures Of High Affinity Human T-Cell Receptors
Bound To Pmhc Revealnative Diagonal Binding Geometry
Unbound Tcr Clone 5-1
Length = 241
Score = 27.3 bits (59), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 37/91 (40%), Gaps = 10/91 (10%)
Query: 96 LRIQGVQKEDAGFFVCSALSVAGSTTVRAF---LQVTSVEDT----PPPIVQVGPSNQTL 148
LR+ + C++ S G+T F ++T +ED PP + PS +
Sbjct: 74 LRLLSAAPSQTSVYFCAS-SYLGNTGELFFGEGSRLTVLEDLKNVFPPEVAVFEPSEAEI 132
Query: 149 PLHSVAFLPCQAVGSPPPHIR--WYKNGNSL 177
A L C A G P H+ W+ NG +
Sbjct: 133 SHTQKATLVCLATGFYPDHVELSWWVNGKEV 163
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.133 0.406
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,183,287
Number of Sequences: 62578
Number of extensions: 398777
Number of successful extensions: 2045
Number of sequences better than 100.0: 238
Number of HSP's better than 100.0 without gapping: 107
Number of HSP's successfully gapped in prelim test: 131
Number of HSP's that attempted gapping in prelim test: 1334
Number of HSP's gapped (non-prelim): 569
length of query: 292
length of database: 14,973,337
effective HSP length: 98
effective length of query: 194
effective length of database: 8,840,693
effective search space: 1715094442
effective search space used: 1715094442
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 51 (24.3 bits)