Query psy15128
Match_columns 292
No_of_seqs 227 out of 2183
Neff 12.0
Searched_HMMs 46136
Date Fri Aug 16 21:17:47 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy15128.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/15128hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3513|consensus 100.0 1.5E-39 3.3E-44 272.2 26.8 276 2-290 298-605 (1051)
2 KOG3513|consensus 100.0 1E-36 2.2E-41 255.4 25.6 268 2-290 197-507 (1051)
3 KOG4221|consensus 100.0 2.6E-31 5.7E-36 222.9 23.3 269 6-290 109-409 (1381)
4 KOG4222|consensus 100.0 2E-31 4.4E-36 222.3 13.6 270 1-291 190-503 (1281)
5 PHA02785 IL-beta-binding prote 100.0 3.4E-29 7.3E-34 194.7 21.4 232 45-290 35-320 (326)
6 KOG4221|consensus 100.0 1.6E-27 3.6E-32 200.4 24.7 192 2-203 197-394 (1381)
7 KOG4194|consensus 100.0 1.5E-27 3.2E-32 188.1 15.7 199 2-207 578-778 (873)
8 KOG4222|consensus 100.0 5.6E-27 1.2E-31 196.1 16.6 267 9-288 103-402 (1281)
9 KOG4194|consensus 99.9 6.2E-26 1.4E-30 179.1 15.8 238 36-288 503-787 (873)
10 PHA02785 IL-beta-binding prote 99.9 3.8E-23 8.2E-28 161.0 20.9 198 2-208 86-310 (326)
11 PHA02826 IL-1 receptor-like pr 99.8 1.8E-19 3.9E-24 132.0 16.5 150 44-205 30-203 (227)
12 PHA02826 IL-1 receptor-like pr 99.7 9.9E-17 2.1E-21 117.7 13.6 104 2-117 102-211 (227)
13 cd05762 Ig8_MLCK Eighth immuno 99.7 3.1E-16 6.7E-21 100.1 12.4 93 37-131 1-93 (98)
14 cd05851 Ig3_Contactin-1 Third 99.7 5.4E-16 1.2E-20 97.1 11.0 87 36-128 1-87 (88)
15 cd04975 Ig4_SCFR_like Fourth i 99.7 8.9E-17 1.9E-21 102.6 6.2 83 206-291 11-94 (101)
16 cd05771 IgC_Tapasin_R Tapasin- 99.7 2E-15 4.3E-20 103.5 12.5 117 2-119 5-133 (139)
17 cd05851 Ig3_Contactin-1 Third 99.7 2.4E-16 5.2E-21 98.7 7.0 75 205-291 8-82 (88)
18 cd05737 Ig_Myomesin_like_C C-t 99.7 3.5E-16 7.6E-21 99.1 7.5 80 204-290 7-86 (92)
19 cd05852 Ig5_Contactin-1 Fifth 99.7 2.6E-16 5.5E-21 94.5 6.3 68 213-291 1-68 (73)
20 cd05762 Ig8_MLCK Eighth immuno 99.7 4.8E-16 1E-20 99.2 7.7 78 205-290 7-84 (98)
21 cd05894 Ig_C5_MyBP-C C5 immuno 99.7 5.3E-16 1.1E-20 96.5 7.3 77 207-290 4-80 (86)
22 cd05745 Ig3_Peroxidasin Third 99.7 3.6E-16 7.8E-21 94.8 6.2 69 212-291 1-69 (74)
23 cd05745 Ig3_Peroxidasin Third 99.6 2.4E-15 5.1E-20 91.1 9.0 73 50-127 1-73 (74)
24 cd05859 Ig4_PDGFR-alpha Fourth 99.6 5.6E-16 1.2E-20 99.1 6.4 83 207-291 12-94 (101)
25 cd05852 Ig5_Contactin-1 Fifth 99.6 3.6E-15 7.9E-20 89.5 9.3 73 51-128 1-73 (73)
26 cd04968 Ig3_Contactin_like Thi 99.6 1.5E-14 3.2E-19 90.9 12.4 87 36-128 1-87 (88)
27 cd05868 Ig4_NrCAM Fourth immun 99.6 8.9E-16 1.9E-20 93.3 6.1 70 213-291 1-70 (76)
28 cd05728 Ig4_Contactin-2-like F 99.6 1.3E-15 2.7E-20 94.9 6.9 75 205-291 6-80 (85)
29 cd05747 Ig5_Titin_like M5, fif 99.6 1.1E-14 2.3E-19 92.3 11.1 89 36-126 3-91 (92)
30 cd05894 Ig_C5_MyBP-C C5 immuno 99.6 9.4E-15 2E-19 90.9 10.6 82 45-127 4-85 (86)
31 cd05892 Ig_Myotilin_C C-termin 99.6 1E-15 2.2E-20 92.2 5.8 69 216-290 1-69 (75)
32 cd05869 Ig5_NCAM-1 Fifth immun 99.6 1.9E-14 4.2E-19 92.1 12.0 93 36-128 2-97 (97)
33 cd04975 Ig4_SCFR_like Fourth i 99.6 1.1E-14 2.4E-19 93.0 10.7 84 44-129 11-100 (101)
34 cd05867 Ig4_L1-CAM_like Fourth 99.6 1.3E-15 2.8E-20 92.8 6.0 68 213-290 1-69 (76)
35 cd05855 Ig_TrkB_d5 Fifth domai 99.6 8.9E-16 1.9E-20 92.7 4.8 71 218-291 3-73 (79)
36 cd05863 Ig2_VEGFR-3 Second imm 99.6 7.7E-16 1.7E-20 90.0 4.3 59 216-290 1-59 (67)
37 cd05863 Ig2_VEGFR-3 Second imm 99.6 8.4E-15 1.8E-19 85.6 8.7 66 54-129 1-66 (67)
38 cd05747 Ig5_Titin_like M5, fif 99.6 4.2E-15 9E-20 94.2 7.9 79 205-291 10-88 (92)
39 cd04971 Ig_TrKABC_d5 Fifth dom 99.6 1.7E-15 3.6E-20 92.8 5.7 73 218-291 3-75 (81)
40 cd05893 Ig_Palladin_C C-termin 99.6 1.7E-15 3.6E-20 91.4 5.5 70 216-291 1-70 (75)
41 PF07679 I-set: Immunoglobulin 99.6 2E-14 4.3E-19 91.1 10.8 90 37-128 1-90 (90)
42 cd05892 Ig_Myotilin_C C-termin 99.6 7.1E-15 1.5E-19 88.5 7.9 71 54-128 1-75 (75)
43 cd05723 Ig4_Neogenin Fourth im 99.6 2.5E-15 5.3E-20 90.2 5.8 66 215-291 1-66 (71)
44 cd04972 Ig_TrkABC_d4 Fourth do 99.6 5.1E-15 1.1E-19 93.4 7.2 78 206-291 8-85 (90)
45 cd05865 Ig1_NCAM-1 First immun 99.6 1.9E-14 4.1E-19 91.2 9.8 85 40-128 4-95 (96)
46 cd05728 Ig4_Contactin-2-like F 99.6 2.9E-14 6.2E-19 88.8 10.3 82 40-127 3-84 (85)
47 cd05746 Ig4_Peroxidasin Fourth 99.6 2.8E-15 6E-20 89.4 5.5 65 216-291 1-65 (69)
48 cd05724 Ig2_Robo Second immuno 99.6 1.3E-14 2.9E-19 91.0 8.8 76 205-289 3-78 (86)
49 cd05730 Ig3_NCAM-1_like Third 99.6 7.6E-15 1.6E-19 93.8 7.7 76 206-290 11-86 (95)
50 cd05870 Ig5_NCAM-2 Fifth immun 99.6 5E-14 1.1E-18 90.3 11.5 90 37-127 3-97 (98)
51 cd05867 Ig4_L1-CAM_like Fourth 99.6 5.1E-14 1.1E-18 85.8 11.0 75 51-128 1-75 (76)
52 cd05891 Ig_M-protein_C C-termi 99.6 7.5E-15 1.6E-19 92.7 7.5 81 203-290 6-86 (92)
53 cd05865 Ig1_NCAM-1 First immun 99.6 5.1E-15 1.1E-19 93.7 6.5 80 205-290 7-89 (96)
54 cd05730 Ig3_NCAM-1_like Third 99.6 6E-14 1.3E-18 89.6 11.5 81 45-129 12-93 (95)
55 cd05848 Ig1_Contactin-5 First 99.6 6.3E-15 1.4E-19 93.4 6.9 68 212-289 18-86 (94)
56 cd05737 Ig_Myomesin_like_C C-t 99.6 4.1E-14 9E-19 89.6 10.6 82 43-127 8-91 (92)
57 cd05723 Ig4_Neogenin Fourth im 99.6 3.9E-14 8.5E-19 84.9 9.9 70 53-127 1-70 (71)
58 cd05893 Ig_Palladin_C C-termin 99.6 2.6E-14 5.7E-19 86.2 9.2 71 54-128 1-75 (75)
59 cd05850 Ig1_Contactin-2 First 99.6 1.2E-14 2.7E-19 92.1 8.1 67 213-289 19-86 (94)
60 cd04969 Ig5_Contactin_like Fif 99.6 5.6E-15 1.2E-19 89.3 6.2 68 213-291 1-68 (73)
61 cd05744 Ig_Myotilin_C_like Imm 99.6 6.5E-15 1.4E-19 89.2 6.2 69 216-290 1-69 (75)
62 cd04973 Ig1_FGFR First immunog 99.6 9.1E-15 2E-19 89.6 6.9 73 205-290 1-73 (79)
63 cd05868 Ig4_NrCAM Fourth immun 99.6 6.7E-14 1.5E-18 85.0 10.4 75 51-128 1-75 (76)
64 cd05735 Ig8_DSCAM Eight immuno 99.6 9.3E-15 2E-19 91.4 6.8 74 213-291 1-76 (88)
65 cd05726 Ig4_Robo Fhird immunog 99.6 5.7E-14 1.2E-18 88.6 10.4 81 51-131 1-84 (90)
66 cd04969 Ig5_Contactin_like Fif 99.6 4.4E-14 9.6E-19 85.3 9.5 73 51-128 1-73 (73)
67 cd05748 Ig_Titin_like Immunogl 99.6 7.8E-15 1.7E-19 89.0 6.2 69 215-291 1-69 (74)
68 cd04972 Ig_TrkABC_d4 Fourth do 99.6 7.8E-14 1.7E-18 88.0 11.0 84 42-127 6-89 (90)
69 cd05857 Ig2_FGFR Second immuno 99.6 1.4E-14 3.1E-19 90.5 7.5 77 207-291 3-80 (85)
70 cd04978 Ig4_L1-NrCAM_like Four 99.6 1E-14 2.2E-19 89.2 6.6 69 213-290 1-69 (76)
71 cd05758 Ig5_KIRREL3-like Fifth 99.6 1.6E-14 3.5E-19 92.6 7.8 83 206-290 9-93 (98)
72 cd07693 Ig1_Robo First immunog 99.6 6.3E-14 1.4E-18 90.8 10.6 93 36-128 1-99 (100)
73 cd05732 Ig5_NCAM-1_like Fifth 99.6 8.5E-14 1.8E-18 89.2 11.1 91 36-127 2-95 (96)
74 cd05735 Ig8_DSCAM Eight immuno 99.6 6E-14 1.3E-18 87.7 9.9 76 51-130 1-83 (88)
75 cd05866 Ig1_NCAM-2 First immun 99.6 8.1E-15 1.8E-19 91.9 5.8 76 205-289 7-83 (92)
76 cd05740 Ig_CEACAM_D4 Fourth im 99.6 1.7E-14 3.7E-19 90.6 7.2 72 206-289 11-82 (91)
77 cd05739 Ig3_RPTP_IIa_LAR_like 99.6 1.2E-14 2.5E-19 86.3 6.0 65 213-291 1-65 (69)
78 cd05760 Ig2_PTK7 Second immuno 99.6 1.4E-14 2.9E-19 88.4 6.4 65 216-289 1-65 (77)
79 cd05859 Ig4_PDGFR-alpha Fourth 99.6 6.1E-14 1.3E-18 89.7 9.5 85 45-129 12-100 (101)
80 cd05864 Ig2_VEGFR-2 Second imm 99.6 6.1E-14 1.3E-18 83.1 8.8 69 54-129 1-69 (70)
81 cd04976 Ig2_VEGFR Second immun 99.6 6.7E-15 1.5E-19 88.1 4.8 63 216-290 1-63 (71)
82 cd04978 Ig4_L1-NrCAM_like Four 99.6 8.3E-14 1.8E-18 85.1 9.8 75 51-128 1-75 (76)
83 cd05864 Ig2_VEGFR-2 Second imm 99.6 7.1E-15 1.5E-19 87.1 4.8 62 216-290 1-62 (70)
84 cd05743 Ig_Perlecan_D2_like Im 99.5 1.7E-14 3.6E-19 88.3 6.1 70 213-290 1-70 (78)
85 PF07679 I-set: Immunoglobulin 99.5 2.7E-14 5.8E-19 90.5 7.2 78 205-290 7-84 (90)
86 cd05870 Ig5_NCAM-2 Fifth immun 99.5 4E-14 8.6E-19 90.8 7.8 80 206-291 9-93 (98)
87 cd05744 Ig_Myotilin_C_like Imm 99.5 6.8E-14 1.5E-18 84.7 8.3 70 54-127 1-74 (75)
88 cd05746 Ig4_Peroxidasin Fourth 99.5 7.1E-14 1.5E-18 83.3 8.3 68 54-126 1-68 (69)
89 cd07693 Ig1_Robo First immunog 99.5 5.6E-14 1.2E-18 91.0 8.5 81 205-289 8-91 (100)
90 cd04968 Ig3_Contactin_like Thi 99.5 3.3E-14 7.3E-19 89.3 7.0 74 205-290 8-81 (88)
91 cd05732 Ig5_NCAM-1_like Fifth 99.5 3.2E-14 6.9E-19 91.2 7.0 80 206-291 9-91 (96)
92 cd05738 Ig2_RPTP_IIa_LAR_like 99.5 2.4E-14 5.2E-19 86.6 5.9 64 216-288 1-64 (74)
93 cd05869 Ig5_NCAM-1 Fifth immun 99.5 3.6E-14 7.9E-19 90.8 7.0 77 209-291 13-92 (97)
94 cd04976 Ig2_VEGFR Second immun 99.5 1.5E-13 3.3E-18 82.2 9.3 70 54-129 1-70 (71)
95 cd05876 Ig3_L1-CAM Third immun 99.5 1.6E-14 3.4E-19 86.6 4.8 65 216-291 1-65 (71)
96 cd05733 Ig6_L1-CAM_like Sixth 99.5 3.9E-14 8.4E-19 86.4 6.6 66 216-289 1-70 (77)
97 cd05876 Ig3_L1-CAM Third immun 99.5 1.2E-13 2.6E-18 82.8 8.6 70 54-128 1-70 (71)
98 cd05722 Ig1_Neogenin First imm 99.5 7.8E-14 1.7E-18 89.0 8.1 75 205-288 6-86 (95)
99 cd05748 Ig_Titin_like Immunogl 99.5 2.2E-13 4.8E-18 82.6 9.7 73 53-127 1-73 (74)
100 KOG3515|consensus 99.5 2.6E-13 5.7E-18 112.8 12.9 277 10-290 71-389 (741)
101 cd05854 Ig6_Contactin-2 Sixth 99.5 5.1E-13 1.1E-17 82.9 11.1 79 52-130 1-83 (85)
102 cd05749 Ig2_Tyro3_like Second 99.5 5.6E-14 1.2E-18 85.8 6.6 69 205-289 5-74 (81)
103 cd05891 Ig_M-protein_C C-termi 99.5 4.9E-13 1.1E-17 84.4 11.2 82 43-127 8-91 (92)
104 cd05866 Ig1_NCAM-2 First immun 99.5 6E-13 1.3E-17 83.4 11.3 76 40-121 4-83 (92)
105 cd05849 Ig1_Contactin-1 First 99.5 1.2E-13 2.6E-18 87.1 8.2 66 213-289 19-85 (93)
106 cd05853 Ig6_Contactin-4 Sixth 99.5 5.8E-14 1.3E-18 86.1 6.5 74 214-291 1-76 (85)
107 cd05857 Ig2_FGFR Second immuno 99.5 2E-13 4.4E-18 85.3 9.1 80 46-127 4-84 (85)
108 cd05858 Ig3_FGFR-2 Third immun 99.5 5.5E-14 1.2E-18 88.6 6.5 78 213-291 1-84 (90)
109 cd05875 Ig6_hNeurofascin_like 99.5 7E-14 1.5E-18 85.0 6.8 66 216-289 1-70 (77)
110 cd05874 Ig6_NrCAM Sixth immuno 99.5 7.1E-14 1.5E-18 85.0 6.7 66 216-289 1-70 (77)
111 cd04974 Ig3_FGFR Third immunog 99.5 7.7E-14 1.7E-18 87.8 7.0 78 213-291 1-84 (90)
112 cd05725 Ig3_Robo Third immunog 99.5 1.8E-13 4E-18 81.7 8.2 68 54-127 1-68 (69)
113 cd05725 Ig3_Robo Third immunog 99.5 5.8E-14 1.3E-18 83.9 5.6 64 216-291 1-64 (69)
114 cd05848 Ig1_Contactin-5 First 99.5 8.6E-13 1.9E-17 83.6 11.2 81 37-121 2-86 (94)
115 cd05760 Ig2_PTK7 Second immuno 99.5 5.7E-13 1.2E-17 81.2 10.0 72 54-129 1-73 (77)
116 cd05763 Ig_1 Subgroup of the i 99.5 7E-14 1.5E-18 85.0 5.9 68 216-291 1-69 (75)
117 cd05765 Ig_3 Subgroup of the i 99.5 3.6E-13 7.9E-18 83.4 9.1 77 51-127 1-80 (81)
118 cd05736 Ig2_Follistatin_like S 99.5 8.5E-14 1.8E-18 84.9 6.1 67 216-290 1-67 (76)
119 cd04973 Ig1_FGFR First immunog 99.5 5E-13 1.1E-17 81.9 9.4 77 44-127 2-78 (79)
120 cd05724 Ig2_Robo Second immuno 99.5 5.4E-13 1.2E-17 83.6 9.8 76 42-121 2-78 (86)
121 cd05856 Ig2_FGFRL1-like Second 99.5 3.4E-13 7.4E-18 83.8 8.8 77 47-127 5-81 (82)
122 cd05764 Ig_2 Subgroup of the i 99.5 5.4E-13 1.2E-17 80.9 9.3 73 51-127 1-73 (74)
123 cd04977 Ig1_NCAM-1_like First 99.5 1.1E-13 2.5E-18 87.3 6.5 78 205-290 7-85 (92)
124 cd05750 Ig_Pro_neuregulin Immu 99.5 9.6E-14 2.1E-18 84.6 6.0 70 216-291 1-72 (75)
125 cd05856 Ig2_FGFRL1-like Second 99.5 5E-14 1.1E-18 87.6 4.8 74 207-290 3-76 (82)
126 cd05895 Ig_Pro_neuregulin-1 Im 99.5 7.2E-14 1.6E-18 85.2 5.2 71 216-291 1-73 (76)
127 cd05850 Ig1_Contactin-2 First 99.5 2.3E-12 4.9E-17 81.8 12.1 81 37-121 2-86 (94)
128 cd05849 Ig1_Contactin-1 First 99.5 1.6E-12 3.4E-17 82.1 11.2 80 37-121 2-85 (93)
129 cd05743 Ig_Perlecan_D2_like Im 99.5 5.9E-13 1.3E-17 81.4 9.0 74 51-126 1-74 (78)
130 cd05758 Ig5_KIRREL3-like Fifth 99.5 1.5E-12 3.3E-17 83.4 11.3 87 36-126 2-97 (98)
131 cd05764 Ig_2 Subgroup of the i 99.5 1.7E-13 3.8E-18 83.1 6.6 68 213-291 1-69 (74)
132 cd07702 Ig2_VEGFR-1 Second imm 99.5 6.3E-13 1.4E-17 78.9 8.7 70 54-128 1-70 (72)
133 cd04977 Ig1_NCAM-1_like First 99.5 7.9E-13 1.7E-17 83.5 9.7 84 40-126 4-90 (92)
134 cd05726 Ig4_Robo Fhird immunog 99.5 1.6E-13 3.4E-18 86.6 6.5 69 213-290 1-75 (90)
135 cd05731 Ig3_L1-CAM_like Third 99.5 8.9E-14 1.9E-18 83.7 5.0 65 216-291 1-65 (71)
136 cd05739 Ig3_RPTP_IIa_LAR_like 99.5 1E-12 2.2E-17 78.0 9.4 68 51-126 1-68 (69)
137 cd05756 Ig1_IL1R_like First im 99.5 3.7E-13 8.1E-18 85.0 7.8 81 45-127 8-93 (94)
138 cd04967 Ig1_Contactin First Ig 99.5 3.3E-13 7.1E-18 85.3 7.6 67 213-289 19-86 (91)
139 cd04970 Ig6_Contactin_like Six 99.5 1.2E-12 2.6E-17 81.6 10.0 79 52-130 1-83 (85)
140 cd05738 Ig2_RPTP_IIa_LAR_like 99.5 1E-12 2.2E-17 79.5 9.3 72 54-128 1-73 (74)
141 cd05731 Ig3_L1-CAM_like Third 99.5 7.6E-13 1.6E-17 79.7 8.7 70 54-128 1-70 (71)
142 cd05740 Ig_CEACAM_D4 Fourth im 99.5 1.7E-12 3.8E-17 81.5 10.6 78 44-128 11-90 (91)
143 cd05853 Ig6_Contactin-4 Sixth 99.5 6.6E-13 1.4E-17 81.4 8.5 77 52-130 1-83 (85)
144 cd04971 Ig_TrKABC_d5 Fifth dom 99.5 1.1E-12 2.4E-17 80.3 9.5 71 56-127 3-79 (81)
145 cd05854 Ig6_Contactin-2 Sixth 99.5 1.5E-13 3.2E-18 85.3 5.7 73 214-291 1-76 (85)
146 cd05855 Ig_TrkB_d5 Fifth domai 99.5 1.1E-12 2.4E-17 79.2 9.2 72 56-127 3-77 (79)
147 cd05763 Ig_1 Subgroup of the i 99.5 7.1E-13 1.5E-17 80.5 8.4 73 54-128 1-74 (75)
148 cd05773 Ig8_hNephrin_like Eigh 99.5 3.7E-13 8E-18 87.7 7.4 76 212-290 22-98 (109)
149 cd05873 Ig_Sema4D_like Immunog 99.4 6.8E-13 1.5E-17 81.6 8.1 69 205-285 3-71 (87)
150 cd04974 Ig3_FGFR Third immunog 99.4 8.8E-13 1.9E-17 83.0 8.6 77 51-128 1-89 (90)
151 cd05773 Ig8_hNephrin_like Eigh 99.4 1.4E-12 3.1E-17 85.0 9.9 79 50-129 22-105 (109)
152 cd05727 Ig2_Contactin-2-like S 99.4 5.8E-13 1.3E-17 83.1 7.6 77 206-290 11-88 (96)
153 cd05756 Ig1_IL1R_like First im 99.4 3.1E-13 6.7E-18 85.3 6.4 75 206-290 7-88 (94)
154 cd07702 Ig2_VEGFR-1 Second imm 99.4 2.5E-13 5.4E-18 80.6 5.3 62 216-288 1-62 (72)
155 KOG3515|consensus 99.4 9.9E-13 2.1E-17 109.4 10.6 275 2-290 167-486 (741)
156 cd05722 Ig1_Neogenin First imm 99.4 3E-12 6.4E-17 81.7 10.4 78 40-120 3-86 (95)
157 cd05858 Ig3_FGFR-2 Third immun 99.4 1.6E-12 3.6E-17 81.9 9.0 77 51-128 1-89 (90)
158 cd04970 Ig6_Contactin_like Six 99.4 4E-13 8.7E-18 83.8 5.9 73 214-291 1-76 (85)
159 cd05752 Ig1_FcgammaR_like Frst 99.4 1.7E-12 3.8E-17 78.7 8.3 67 37-116 1-68 (78)
160 cd05771 IgC_Tapasin_R Tapasin- 99.4 1.5E-11 3.2E-16 84.3 13.5 77 95-176 2-80 (139)
161 cd05749 Ig2_Tyro3_like Second 99.4 3.2E-12 7E-17 78.1 8.8 71 41-121 3-74 (81)
162 cd05742 Ig1_VEGFR_like First i 99.4 2.8E-13 6E-18 84.3 4.2 75 213-291 1-78 (84)
163 cd05736 Ig2_Follistatin_like S 99.4 7.2E-12 1.6E-16 76.3 9.9 73 54-129 1-74 (76)
164 cd05765 Ig_3 Subgroup of the i 99.4 1.2E-12 2.5E-17 81.1 6.3 72 213-290 1-75 (81)
165 cd05734 Ig7_DSCAM Seventh immu 99.4 5.1E-12 1.1E-16 77.6 8.7 67 54-120 1-70 (79)
166 cd05734 Ig7_DSCAM Seventh immu 99.4 8.5E-13 1.8E-17 81.0 5.0 65 216-289 1-71 (79)
167 cd05742 Ig1_VEGFR_like First i 99.4 4.6E-12 9.9E-17 78.8 8.3 78 51-128 1-83 (84)
168 cd04979 Ig_Semaphorin_C Immuno 99.4 2.6E-12 5.5E-17 80.9 7.2 74 205-289 3-78 (89)
169 cd05882 Ig1_Necl-1 First (N-te 99.4 1.6E-11 3.4E-16 77.5 10.7 72 44-115 5-83 (95)
170 cd05861 Ig1_PDGFR-alphabeta Fr 99.4 8.4E-12 1.8E-16 77.3 9.2 77 51-128 1-82 (84)
171 cd05754 Ig3_Perlecan_like Thir 99.4 2E-12 4.3E-17 80.6 6.4 74 205-291 8-81 (85)
172 cd05898 Ig5_KIRREL3 Fifth immu 99.4 3.9E-12 8.5E-17 80.1 7.6 83 206-290 9-93 (98)
173 cd05757 Ig2_IL1R_like Second i 99.4 1.9E-12 4.2E-17 81.1 6.0 73 207-290 4-80 (92)
174 cd05750 Ig_Pro_neuregulin Immu 99.4 5.2E-12 1.1E-16 76.9 7.7 71 54-124 1-73 (75)
175 cd04967 Ig1_Contactin First Ig 99.3 4.3E-11 9.4E-16 75.6 10.6 80 37-120 2-85 (91)
176 cd05873 Ig_Sema4D_like Immunog 99.3 3.6E-11 7.8E-16 74.0 9.6 70 42-117 2-71 (87)
177 cd05752 Ig1_FcgammaR_like Frst 99.3 1.1E-11 2.4E-16 75.2 6.7 61 205-284 7-68 (78)
178 cd05729 Ig2_FGFR_like Second i 99.3 1.7E-11 3.7E-16 76.6 7.8 77 207-290 3-79 (85)
179 cd07701 Ig1_Necl-3 First (N-te 99.3 5.9E-11 1.3E-15 75.2 10.2 83 43-126 4-93 (95)
180 cd05898 Ig5_KIRREL3 Fifth immu 99.3 9.4E-11 2E-15 73.9 10.9 90 36-126 2-97 (98)
181 cd05885 Ig2_Necl-4 Second immu 99.3 1.1E-11 2.4E-16 74.6 6.3 69 215-288 1-69 (80)
182 cd05754 Ig3_Perlecan_like Thir 99.3 2.6E-11 5.6E-16 75.6 8.2 77 42-126 7-84 (85)
183 cd05733 Ig6_L1-CAM_like Sixth 99.3 2.3E-11 5E-16 74.1 7.8 66 54-121 1-70 (77)
184 cd05895 Ig_Pro_neuregulin-1 Im 99.3 3.5E-11 7.6E-16 73.2 8.4 70 54-124 1-74 (76)
185 cd05874 Ig6_NrCAM Sixth immuno 99.3 3.3E-11 7.1E-16 73.2 8.1 66 54-121 1-70 (77)
186 cd04979 Ig_Semaphorin_C Immuno 99.3 7.2E-11 1.6E-15 74.3 9.4 73 43-118 3-75 (89)
187 cd05845 Ig2_L1-CAM_like Second 99.3 3.1E-11 6.6E-16 75.3 7.3 75 206-289 11-86 (95)
188 cd05753 Ig2_FcgammaR_like Seco 99.3 2.6E-11 5.7E-16 74.8 6.8 68 207-289 8-75 (83)
189 cd05875 Ig6_hNeurofascin_like 99.3 5E-11 1.1E-15 72.4 8.0 66 54-121 1-70 (77)
190 cd05757 Ig2_IL1R_like Second i 99.3 8.3E-11 1.8E-15 73.8 8.9 77 46-128 5-86 (92)
191 cd05729 Ig2_FGFR_like Second i 99.2 1.1E-10 2.4E-15 72.9 9.4 81 46-127 4-84 (85)
192 PHA03376 BARF1; Provisional 99.2 9.4E-10 2E-14 75.4 14.1 125 45-174 20-162 (221)
193 cd07690 Ig1_CD4 First immunogl 99.2 5.5E-11 1.2E-15 74.5 7.7 81 208-289 2-92 (94)
194 smart00408 IGc2 Immunoglobulin 99.2 4.7E-11 1E-15 69.9 6.9 63 212-286 1-63 (63)
195 cd05882 Ig1_Necl-1 First (N-te 99.2 3.1E-11 6.8E-16 76.2 6.3 74 206-284 5-84 (95)
196 cd05861 Ig1_PDGFR-alphabeta Fr 99.2 3.2E-11 7E-16 74.7 6.3 68 213-286 1-70 (84)
197 cd05753 Ig2_FcgammaR_like Seco 99.2 6.7E-11 1.4E-15 73.0 7.6 65 45-119 8-73 (83)
198 cd05871 Ig_Semaphorin_classIII 99.2 3.2E-10 6.9E-15 71.1 9.0 81 46-128 6-88 (91)
199 cd05885 Ig2_Necl-4 Second immu 99.2 4.3E-10 9.4E-15 67.7 8.3 67 54-120 2-69 (80)
200 cd05717 Ig1_Necl-1-3_like Firs 99.2 8E-10 1.7E-14 70.4 10.2 83 43-126 4-93 (95)
201 smart00408 IGc2 Immunoglobulin 99.1 3.5E-10 7.7E-15 66.1 7.6 62 50-117 1-62 (63)
202 cd05727 Ig2_Contactin-2-like S 99.1 2.3E-10 4.9E-15 71.6 6.7 74 44-119 11-85 (96)
203 cd05896 Ig1_IL1RAPL-1_like Fir 99.1 5.8E-10 1.3E-14 69.9 8.1 83 45-127 9-103 (104)
204 cd05862 Ig1_VEGFR First immuno 99.1 9.2E-10 2E-14 68.4 9.0 79 51-129 1-85 (86)
205 PF13895 Ig_2: Immunoglobulin 99.1 1.1E-09 2.5E-14 67.4 9.4 61 46-118 9-69 (80)
206 cd05897 Ig2_IL1R2_like Second 99.1 1.8E-10 4E-15 72.1 5.4 75 207-289 4-82 (95)
207 cd05845 Ig2_L1-CAM_like Second 99.1 4.6E-10 1E-14 70.0 6.5 72 43-118 10-83 (95)
208 cd07701 Ig1_Necl-3 First (N-te 99.1 3.8E-10 8.2E-15 71.5 6.1 77 206-287 5-87 (95)
209 cd05862 Ig1_VEGFR First immuno 99.1 2.7E-10 5.9E-15 70.8 4.9 75 213-292 1-80 (86)
210 PF00047 ig: Immunoglobulin do 99.1 1.2E-10 2.5E-15 68.4 3.1 64 213-281 1-64 (64)
211 cd07690 Ig1_CD4 First immunogl 99.1 1E-09 2.2E-14 68.8 7.5 73 46-118 2-89 (94)
212 cd05759 Ig2_KIRREL3-like Secon 99.0 7.4E-10 1.6E-14 68.4 6.4 72 215-288 1-72 (82)
213 cd05774 Ig_CEACAM_D1 First imm 99.0 4.1E-09 9E-14 67.6 9.6 77 41-117 3-93 (105)
214 PF00047 ig: Immunoglobulin do 99.0 2.4E-10 5.1E-15 67.1 3.6 58 51-113 1-64 (64)
215 cd05860 Ig4_SCFR Fourth immuno 99.0 9.5E-10 2.1E-14 68.8 6.3 82 206-290 11-93 (101)
216 PF13895 Ig_2: Immunoglobulin 99.0 5.8E-10 1.3E-14 68.8 5.1 62 208-287 9-70 (80)
217 cd05871 Ig_Semaphorin_classIII 99.0 1.8E-09 3.9E-14 67.7 7.0 69 207-286 5-78 (91)
218 smart00409 IG Immunoglobulin. 99.0 1.1E-08 2.4E-13 63.7 10.7 81 45-127 3-84 (86)
219 smart00410 IG_like Immunoglobu 99.0 1.1E-08 2.4E-13 63.7 10.7 81 45-127 3-84 (86)
220 cd05872 Ig_Sema4B_like Immunog 99.0 1.7E-09 3.8E-14 66.1 6.6 65 206-283 4-68 (85)
221 cd05860 Ig4_SCFR Fourth immuno 99.0 1.9E-08 4.2E-13 63.0 10.4 84 44-128 11-99 (101)
222 cd05717 Ig1_Necl-1-3_like Firs 99.0 2.6E-09 5.6E-14 68.1 6.7 77 206-287 5-87 (95)
223 cd05897 Ig2_IL1R2_like Second 98.9 9.6E-09 2.1E-13 64.4 8.3 75 46-123 5-84 (95)
224 cd05881 Ig1_Necl-2 First (N-te 98.9 2E-08 4.3E-13 63.0 9.5 73 44-116 5-84 (95)
225 smart00409 IG Immunoglobulin. 98.9 9.8E-09 2.1E-13 64.0 7.9 76 206-289 2-78 (86)
226 smart00410 IG_like Immunoglobu 98.9 9.8E-09 2.1E-13 64.0 7.9 76 206-289 2-78 (86)
227 cd05759 Ig2_KIRREL3-like Secon 98.9 1.5E-08 3.3E-13 62.5 8.4 75 54-128 2-80 (82)
228 cd05879 Ig_P0 Immunoglobulin ( 98.9 5E-08 1.1E-12 63.9 10.9 78 43-120 5-106 (116)
229 cd05751 Ig1_LILRB1_like First 98.9 1.2E-08 2.6E-13 64.2 7.6 73 37-116 3-75 (91)
230 cd05741 Ig_CEACAM_D1_like Firs 98.9 2.3E-08 5E-13 63.4 8.6 68 51-118 1-81 (92)
231 cd05883 Ig2_Necl-2 Second immu 98.9 1.1E-08 2.3E-13 61.9 6.5 68 215-286 1-68 (82)
232 cd05896 Ig1_IL1RAPL-1_like Fir 98.9 1.3E-08 2.7E-13 64.0 6.5 72 206-286 8-94 (104)
233 cd05761 Ig2_Necl-1-4_like Seco 98.8 1.6E-08 3.5E-13 62.3 6.8 71 215-288 1-71 (82)
234 PF13927 Ig_3: Immunoglobulin 98.8 8.7E-09 1.9E-13 62.5 5.5 73 37-115 2-75 (75)
235 cd05900 Ig_Aggrecan Immunoglob 98.8 1.1E-07 2.3E-12 61.9 10.6 80 50-129 1-109 (112)
236 cd07705 Ig2_Necl-1 Second immu 98.8 2.9E-08 6.2E-13 61.1 7.0 70 216-288 2-72 (83)
237 cd05714 Ig_CSPGs_LP Immunoglob 98.8 1.2E-07 2.7E-12 61.6 10.4 81 50-130 1-104 (106)
238 cd05884 Ig2_Necl-3 Second immu 98.8 2.7E-08 5.9E-13 61.1 6.7 71 216-288 2-72 (83)
239 cd05877 Ig_LP_like Immunoglobu 98.8 2.5E-07 5.3E-12 60.3 10.9 81 50-130 1-104 (106)
240 cd05755 Ig2_ICAM-1_like Second 98.8 3.7E-08 8E-13 62.1 6.7 76 207-288 10-88 (100)
241 cd05878 Ig_Aggrecan_like Immun 98.8 2.9E-07 6.3E-12 60.0 11.0 81 50-130 1-108 (110)
242 cd05713 Ig_MOG_like Immunoglob 98.8 1.3E-07 2.8E-12 60.9 9.2 77 51-127 1-98 (100)
243 cd05755 Ig2_ICAM-1_like Second 98.8 1.2E-07 2.6E-12 59.8 8.6 80 39-118 4-86 (100)
244 cd05751 Ig1_LILRB1_like First 98.7 2E-08 4.4E-13 63.2 5.1 67 207-285 10-76 (91)
245 cd05881 Ig1_Necl-2 First (N-te 98.7 3.5E-08 7.7E-13 61.9 6.0 74 206-284 5-84 (95)
246 cd05872 Ig_Sema4B_like Immunog 98.7 1.4E-07 2.9E-12 57.8 8.2 76 45-128 5-80 (85)
247 cd04983 IgV_TCR_alpha_like Imm 98.7 1.8E-07 3.9E-12 61.3 9.2 76 42-117 4-93 (109)
248 cd00098 IgC Immunoglobulin Con 98.7 3E-08 6.5E-13 63.2 4.9 74 211-287 11-87 (95)
249 cd05775 Ig_SLAM-CD84_like_N N- 98.7 1.6E-07 3.6E-12 59.8 8.2 71 49-119 2-86 (97)
250 cd05899 IgV_TCR_beta Immunoglo 98.7 1.8E-07 3.9E-12 61.3 8.6 75 41-116 3-94 (110)
251 cd05718 Ig1_PVR_like First imm 98.7 4E-07 8.7E-12 58.4 9.3 77 52-128 1-97 (98)
252 cd05883 Ig2_Necl-2 Second immu 98.6 4.6E-07 9.9E-12 54.9 8.6 65 54-118 2-68 (82)
253 cd05902 Ig_Neurocan Immunoglob 98.6 6.7E-07 1.5E-11 57.9 9.8 79 51-129 2-107 (110)
254 cd04983 IgV_TCR_alpha_like Imm 98.6 1.4E-07 3.1E-12 61.8 6.8 78 205-286 5-94 (109)
255 cd05899 IgV_TCR_beta Immunoglo 98.6 2E-07 4.3E-12 61.1 7.2 75 205-285 5-95 (110)
256 PF13927 Ig_3: Immunoglobulin 98.6 5.2E-08 1.1E-12 59.0 4.1 59 214-283 16-75 (75)
257 cd05715 Ig_P0-like Immunoglobu 98.6 9.3E-07 2E-11 58.5 10.1 76 43-118 5-104 (116)
258 cd05880 Ig_EVA1 Immunoglobulin 98.6 7.8E-07 1.7E-11 58.6 9.5 76 43-118 5-103 (115)
259 PF07686 V-set: Immunoglobulin 98.6 5.3E-07 1.2E-11 59.5 8.3 75 42-116 7-101 (114)
260 cd05879 Ig_P0 Immunoglobulin ( 98.6 4E-07 8.7E-12 59.7 7.4 80 206-288 6-106 (116)
261 cd04980 IgV_L_kappa Immunoglob 98.6 3.9E-07 8.4E-12 59.3 7.3 76 40-115 4-92 (106)
262 PHA03376 BARF1; Provisional 98.6 2.1E-07 4.5E-12 64.2 5.9 74 1-75 90-163 (221)
263 cd00099 IgV Immunoglobulin var 98.5 5.3E-07 1.1E-11 58.6 7.5 72 47-118 2-91 (105)
264 cd05711 Ig_FcalphaRI Immunoglo 98.5 7.7E-07 1.7E-11 56.3 7.8 67 45-114 9-75 (94)
265 cd05741 Ig_CEACAM_D1_like Firs 98.5 2.4E-07 5.1E-12 58.6 5.4 75 213-288 1-83 (92)
266 cd00098 IgC Immunoglobulin Con 98.5 7.5E-07 1.6E-11 56.7 7.6 71 49-119 11-87 (95)
267 cd07694 Ig2_CD4 Second immunog 98.5 3E-06 6.5E-11 51.3 9.2 64 45-116 8-73 (88)
268 cd05888 Ig1_Nectin-4_like Frst 98.5 4.6E-06 9.9E-11 53.5 10.5 76 53-128 2-99 (100)
269 cd05886 Ig1_Nectin-1_like Firs 98.5 3.9E-06 8.5E-11 53.3 10.0 76 53-128 2-98 (99)
270 cd05880 Ig_EVA1 Immunoglobulin 98.5 5.5E-07 1.2E-11 59.3 6.2 80 205-287 5-104 (115)
271 cd05901 Ig_Versican Immunoglob 98.5 8.9E-06 1.9E-10 52.9 11.5 80 51-130 2-115 (117)
272 cd04982 IgV_TCR_gamma Immunogl 98.5 1.2E-06 2.6E-11 58.1 7.7 74 42-115 4-98 (116)
273 cd05761 Ig2_Necl-1-4_like Seco 98.5 2.3E-06 5E-11 52.6 8.4 66 54-119 2-70 (82)
274 cd04980 IgV_L_kappa Immunoglob 98.5 9.9E-07 2.1E-11 57.4 7.1 74 205-284 7-93 (106)
275 PHA02987 Ig domain OX-2-like p 98.5 2.3E-06 5E-11 59.5 8.9 86 45-130 24-123 (189)
276 cd05846 Ig1_MRC-OX-2_like Firs 98.4 2.6E-06 5.7E-11 54.3 8.7 78 51-128 1-96 (97)
277 PF08205 C2-set_2: CD80-like C 98.4 2.2E-07 4.9E-12 58.3 3.7 75 213-289 14-88 (89)
278 cd00099 IgV Immunoglobulin var 98.4 6.5E-07 1.4E-11 58.2 5.6 74 209-286 2-91 (105)
279 cd05774 Ig_CEACAM_D1 First imm 98.4 1.1E-06 2.3E-11 56.5 6.2 80 207-287 7-95 (105)
280 cd05775 Ig_SLAM-CD84_like_N N- 98.4 7.6E-07 1.6E-11 56.7 5.5 78 211-288 2-87 (97)
281 cd05714 Ig_CSPGs_LP Immunoglob 98.4 1E-06 2.2E-11 57.3 6.2 76 212-288 1-94 (106)
282 cd04984 IgV_L_lambda Immunoglo 98.4 2E-06 4.4E-11 55.0 7.1 69 47-115 2-84 (98)
283 PHA03270 envelope glycoprotein 98.4 0.00022 4.7E-09 56.1 18.5 104 95-203 183-292 (466)
284 PHA03269 envelope glycoprotein 98.4 0.0001 2.3E-09 58.7 16.9 206 1-229 292-516 (566)
285 cd07706 IgV_TCR_delta Immunogl 98.3 3.6E-06 7.7E-11 55.7 7.8 75 41-115 4-93 (116)
286 cd07705 Ig2_Necl-1 Second immu 98.3 6.6E-06 1.4E-10 50.6 8.3 66 54-119 2-71 (83)
287 cd05887 Ig1_Nectin-3_like Firs 98.3 1.8E-05 3.9E-10 49.8 10.2 77 52-128 1-95 (96)
288 cd05772 IgC_SIRP Signal-regula 98.3 1.4E-05 3.1E-10 51.9 9.9 76 46-121 16-96 (111)
289 cd05715 Ig_P0-like Immunoglobu 98.3 3.3E-06 7.2E-11 55.9 7.0 82 205-287 5-105 (116)
290 cd07699 IgC_L Immunoglobulin C 98.3 4.3E-06 9.3E-11 53.5 7.2 73 47-119 13-91 (100)
291 cd05884 Ig2_Necl-3 Second immu 98.3 6.6E-06 1.4E-10 50.5 7.7 66 54-119 2-71 (83)
292 cd05718 Ig1_PVR_like First imm 98.3 1.8E-06 3.9E-11 55.3 5.5 72 214-289 1-90 (98)
293 cd04984 IgV_L_lambda Immunoglo 98.3 2.4E-06 5.1E-11 54.7 6.0 70 209-284 2-85 (98)
294 smart00407 IGc1 Immunoglobulin 98.3 2.1E-06 4.5E-11 51.8 5.4 69 216-286 2-72 (75)
295 cd05877 Ig_LP_like Immunoglobu 98.3 3.3E-06 7E-11 55.0 6.6 77 212-289 1-95 (106)
296 PF08205 C2-set_2: CD80-like C 98.3 5.8E-06 1.3E-10 51.8 7.1 69 51-119 14-86 (89)
297 cd04982 IgV_TCR_gamma Immunogl 98.3 4.6E-06 1E-10 55.2 6.9 79 205-284 5-99 (116)
298 cd05847 IgC_CH2_IgE CH2 domain 98.3 1.4E-05 3E-10 50.3 8.4 70 50-119 13-88 (94)
299 cd05716 Ig_pIgR Immunoglobulin 98.2 8.2E-06 1.8E-10 52.2 7.6 71 46-116 2-86 (98)
300 cd05712 Ig_Siglec_N Immunoglob 98.2 9.5E-06 2.1E-10 53.9 7.8 75 42-116 5-102 (119)
301 cd05711 Ig_FcalphaRI Immunoglo 98.2 4.6E-06 9.9E-11 52.7 5.9 67 207-282 9-75 (94)
302 cd07700 IgV_CD8_beta Immunoglo 98.2 1.2E-05 2.5E-10 52.4 8.0 68 47-114 2-92 (107)
303 cd05847 IgC_CH2_IgE CH2 domain 98.2 3E-06 6.5E-11 53.3 5.0 76 212-289 13-90 (94)
304 cd05713 Ig_MOG_like Immunoglob 98.2 3.2E-06 6.9E-11 54.3 5.3 27 262-288 65-91 (100)
305 PHA03270 envelope glycoprotein 98.2 0.00034 7.4E-09 55.1 16.7 204 2-229 186-405 (466)
306 cd05766 IgC_MHC_II_beta Class 98.2 6.5E-06 1.4E-10 51.9 6.2 72 211-287 12-85 (94)
307 PHA03273 envelope glycoprotein 98.2 0.00045 9.9E-09 54.9 17.4 206 2-229 202-425 (486)
308 cd05719 Ig2_PVR_like Second im 98.2 1.1E-05 2.4E-10 50.8 7.2 77 51-127 15-92 (95)
309 cd07698 IgC_MHC_I_alpha3 Class 98.2 3.9E-05 8.5E-10 48.4 9.8 66 51-119 14-85 (93)
310 cd05716 Ig_pIgR Immunoglobulin 98.2 5.7E-06 1.2E-10 52.9 6.0 75 208-285 2-87 (98)
311 cd04981 IgV_H Immunoglobulin ( 98.2 1.8E-05 3.9E-10 52.3 8.5 73 43-115 4-97 (117)
312 cd05770 IgC_beta2m Class I maj 98.2 6.1E-06 1.3E-10 51.7 5.7 70 212-286 14-84 (93)
313 cd07698 IgC_MHC_I_alpha3 Class 98.2 6.6E-06 1.4E-10 51.9 5.9 70 213-287 14-85 (93)
314 cd05772 IgC_SIRP Signal-regula 98.2 8E-06 1.7E-10 53.1 6.3 73 210-286 18-93 (111)
315 cd05769 IgC_TCR_beta T cell re 98.2 3.2E-06 7E-11 55.1 4.4 76 212-289 17-96 (115)
316 cd05889 Ig1_DNAM-1_like First 98.2 3.1E-05 6.7E-10 48.8 8.7 71 52-122 1-89 (96)
317 smart00407 IGc1 Immunoglobulin 98.2 3.9E-05 8.5E-10 46.2 8.9 64 54-117 2-71 (75)
318 PF07654 C1-set: Immunoglobuli 98.2 4.3E-06 9.4E-11 51.6 4.8 72 212-288 7-80 (83)
319 cd00096 Ig Immunoglobulin doma 98.2 8E-06 1.7E-10 48.4 6.0 69 216-288 1-69 (74)
320 cd07706 IgV_TCR_delta Immunogl 98.2 7.9E-06 1.7E-10 54.1 6.3 77 205-284 6-94 (116)
321 cd05900 Ig_Aggrecan Immunoglob 98.2 6.5E-06 1.4E-10 53.6 5.7 75 212-288 1-100 (112)
322 cd05720 Ig_CD8_alpha Immunoglo 98.1 1.5E-05 3.3E-10 51.4 7.2 68 47-114 2-89 (104)
323 cd07699 IgC_L Immunoglobulin C 98.1 4.9E-06 1.1E-10 53.2 4.6 74 211-286 15-90 (100)
324 cd00096 Ig Immunoglobulin doma 98.1 2.4E-05 5.1E-10 46.3 7.2 64 54-117 1-66 (74)
325 cd07696 IgC_CH3 CH3 domain (th 98.1 4E-05 8.6E-10 48.5 8.2 76 45-120 8-89 (96)
326 PHA03273 envelope glycoprotein 98.1 0.0011 2.4E-08 52.8 17.4 79 95-178 199-280 (486)
327 cd05878 Ig_Aggrecan_like Immun 98.1 1.5E-05 3.3E-10 52.0 6.2 74 212-285 1-95 (110)
328 cd07703 Ig2_Nectin-2_like Seco 98.1 1.9E-05 4.1E-10 49.6 6.3 76 52-127 16-92 (95)
329 cd05768 IgC_CH4 CH4 domain (fo 98.1 3E-05 6.6E-10 49.7 7.4 73 47-119 12-93 (102)
330 PHA03269 envelope glycoprotein 98.1 0.0014 3.1E-08 52.5 17.7 93 95-192 290-388 (566)
331 cd05888 Ig1_Nectin-4_like Frst 98.1 1.5E-05 3.2E-10 51.1 5.9 28 261-288 63-91 (100)
332 cd05886 Ig1_Nectin-1_like Firs 98.1 1.9E-05 4.2E-10 50.2 6.1 28 262-289 63-91 (99)
333 cd05846 Ig1_MRC-OX-2_like Firs 98.0 2.2E-05 4.7E-10 50.1 6.3 75 213-287 1-87 (97)
334 cd05719 Ig2_PVR_like Second im 98.0 2.2E-05 4.8E-10 49.5 6.2 70 213-288 15-85 (95)
335 PHA02987 Ig domain OX-2-like p 98.0 3E-05 6.5E-10 54.1 7.2 74 206-283 23-106 (189)
336 cd05768 IgC_CH4 CH4 domain (fo 98.0 8.3E-06 1.8E-10 52.2 4.3 75 210-286 13-92 (102)
337 cd05770 IgC_beta2m Class I maj 98.0 0.00011 2.3E-09 46.1 8.9 64 49-118 13-84 (93)
338 cd07700 IgV_CD8_beta Immunoglo 98.0 2.3E-05 5E-10 51.0 6.1 74 209-283 2-93 (107)
339 cd07696 IgC_CH3 CH3 domain (th 98.0 1.1E-05 2.5E-10 50.9 4.4 76 209-286 10-87 (96)
340 PF07686 V-set: Immunoglobulin 98.0 7.4E-06 1.6E-10 54.0 3.8 79 206-284 9-101 (114)
341 PHA03271 envelope glycoprotein 98.0 0.0013 2.9E-08 51.6 16.0 205 2-229 211-434 (490)
342 cd05887 Ig1_Nectin-3_like Firs 98.0 2.2E-05 4.8E-10 49.4 5.5 74 214-291 1-90 (96)
343 cd05767 IgC_MHC_II_alpha Class 98.0 2.3E-05 5E-10 49.3 5.4 70 212-286 14-85 (94)
344 cd07703 Ig2_Nectin-2_like Seco 97.9 3.6E-05 7.7E-10 48.4 5.8 68 214-287 16-84 (95)
345 cd05766 IgC_MHC_II_beta Class 97.9 0.00027 5.9E-09 44.5 9.8 68 49-119 12-85 (94)
346 cd05769 IgC_TCR_beta T cell re 97.9 0.00011 2.3E-09 48.1 8.0 76 46-121 13-96 (115)
347 cd05767 IgC_MHC_II_alpha Class 97.9 0.00037 8E-09 43.8 10.2 66 50-118 14-85 (94)
348 cd04985 IgC_CH1 CH1 domain (fi 97.9 0.0002 4.4E-09 45.2 8.8 67 50-117 15-87 (95)
349 smart00406 IGv Immunoglobulin 97.9 9E-05 1.9E-09 45.4 6.9 61 53-113 1-81 (81)
350 cd07704 Ig2_Nectin-3-4_like Se 97.9 9E-05 1.9E-09 46.5 6.4 75 46-120 11-87 (97)
351 cd07694 Ig2_CD4 Second immunog 97.8 0.00013 2.8E-09 44.3 6.7 63 207-282 8-71 (88)
352 cd05712 Ig_Siglec_N Immunoglob 97.8 0.00011 2.4E-09 48.8 7.0 79 205-284 6-102 (119)
353 cd04981 IgV_H Immunoglobulin ( 97.8 7.8E-05 1.7E-09 49.3 6.3 78 205-283 4-97 (117)
354 KOG1480|consensus 97.8 3.1E-05 6.7E-10 65.0 5.2 144 136-289 24-210 (909)
355 cd05889 Ig1_DNAM-1_like First 97.8 0.00014 3.1E-09 45.8 6.8 72 214-289 1-88 (96)
356 PF07654 C1-set: Immunoglobuli 97.8 0.00024 5.1E-09 43.8 7.7 68 50-120 7-80 (83)
357 cd07697 IgC_TCR_gamma T cell r 97.8 5E-05 1.1E-09 47.8 4.7 69 212-285 15-85 (96)
358 cd04986 IgC_CH2 CH2 domain (se 97.8 0.00015 3.2E-09 45.8 6.6 73 46-118 14-90 (99)
359 cd05720 Ig_CD8_alpha Immunoglo 97.8 5.6E-05 1.2E-09 48.8 4.8 74 209-283 2-90 (104)
360 cd07697 IgC_TCR_gamma T cell r 97.8 0.0007 1.5E-08 42.7 9.4 68 47-117 12-85 (96)
361 TIGR00864 PCC polycystin catio 97.8 0.042 9.1E-07 54.3 24.5 215 5-237 1664-1905(2740)
362 cd07692 Ig_CD3_epsilon Immunog 97.7 8.5E-05 1.8E-09 42.2 4.1 52 211-284 5-56 (65)
363 cd04986 IgC_CH2 CH2 domain (se 97.6 0.0001 2.2E-09 46.5 4.4 75 210-288 16-92 (99)
364 PHA02633 hypothetical protein; 97.6 0.00019 4.2E-09 40.0 4.8 39 92-130 16-54 (63)
365 cd07704 Ig2_Nectin-3-4_like Se 97.6 0.0003 6.6E-09 44.2 6.1 74 207-286 10-85 (97)
366 cd04985 IgC_CH1 CH1 domain (fi 97.6 0.00017 3.7E-09 45.5 5.0 71 212-285 15-87 (95)
367 cd05902 Ig_Neurocan Immunoglob 97.6 0.00018 3.9E-09 46.7 5.2 25 261-285 71-95 (110)
368 TIGR00864 PCC polycystin catio 97.5 0.13 2.8E-06 51.2 24.5 217 5-240 1834-2085(2740)
369 cd07689 Ig2_VCAM-1 Second immu 97.5 0.00048 1E-08 43.0 5.6 74 209-286 11-87 (99)
370 PHA02633 hypothetical protein; 97.4 0.00027 5.8E-09 39.4 3.2 34 2-36 22-55 (63)
371 cd05901 Ig_Versican Immunoglob 97.4 0.0009 1.9E-08 43.7 6.0 28 262-289 79-106 (117)
372 cd07691 Ig_CD3_gamma_delta Imm 97.3 0.00088 1.9E-08 38.4 5.0 49 51-115 6-54 (69)
373 cd07692 Ig_CD3_epsilon Immunog 97.3 0.00041 8.9E-09 39.5 3.6 51 49-115 5-55 (65)
374 cd05721 IgV_CTLA-4 Immunoglobu 97.3 0.0028 6E-08 41.0 7.8 71 43-113 5-93 (115)
375 smart00406 IGv Immunoglobulin 97.3 0.0008 1.7E-08 41.1 4.9 20 262-281 62-81 (81)
376 PF08204 V-set_CD47: CD47 immu 97.2 0.00055 1.2E-08 45.2 3.9 80 48-128 24-119 (130)
377 cd07689 Ig2_VCAM-1 Second immu 97.2 0.0025 5.4E-08 39.9 6.4 68 48-115 12-84 (99)
378 PHA03271 envelope glycoprotein 96.9 0.16 3.6E-06 40.5 21.5 82 95-180 208-292 (490)
379 cd07691 Ig_CD3_gamma_delta Imm 96.8 0.0031 6.7E-08 36.3 4.1 50 212-283 5-54 (69)
380 PHA02982 hypothetical protein; 96.8 0.077 1.7E-06 38.0 11.7 123 44-176 32-173 (251)
381 KOG4597|consensus 96.8 0.0031 6.6E-08 50.5 5.1 87 42-128 202-291 (560)
382 PF08204 V-set_CD47: CD47 immu 96.7 0.0046 1E-07 40.9 5.0 77 209-287 23-110 (130)
383 KOG0613|consensus 96.4 0.02 4.4E-07 51.9 8.2 203 2-205 282-508 (1205)
384 PF07354 Sp38: Zona-pellucida- 96.1 0.011 2.4E-07 43.8 4.6 50 64-117 11-60 (271)
385 PHA03042 CD47-like protein; Pr 96.0 0.086 1.9E-06 39.5 8.7 71 48-127 28-103 (286)
386 PHA02914 Immunoglobulin-like d 95.5 0.42 9.2E-06 38.0 11.0 122 46-178 274-422 (500)
387 PHA03042 CD47-like protein; Pr 95.5 0.049 1.1E-06 40.7 5.7 61 211-286 29-94 (286)
388 PHA02982 hypothetical protein; 95.5 0.045 9.8E-07 39.1 5.2 84 206-289 32-127 (251)
389 cd05721 IgV_CTLA-4 Immunoglobu 95.5 0.094 2E-06 34.1 6.3 74 207-282 7-94 (115)
390 KOG1480|consensus 95.3 0.018 3.9E-07 49.3 3.3 165 36-206 24-199 (909)
391 PHA03052 Hypothetical protein; 95.2 0.1 2.3E-06 29.8 5.1 36 206-241 5-42 (69)
392 PF11465 Receptor_2B4: Natural 94.6 0.61 1.3E-05 29.7 7.9 36 93-129 70-105 (108)
393 PF07354 Sp38: Zona-pellucida- 94.5 0.057 1.2E-06 40.3 3.8 49 227-285 11-60 (271)
394 PHA02914 Immunoglobulin-like d 94.5 2.1 4.5E-05 34.4 22.7 79 206-284 272-368 (500)
395 cd05890 Ig2_Nectin-1_like Seco 94.2 0.25 5.3E-06 30.7 5.4 63 54-116 23-86 (98)
396 KOG4597|consensus 94.2 0.055 1.2E-06 43.8 3.3 78 206-289 204-284 (560)
397 PHA02865 MHC-like TNF binding 93.7 0.16 3.5E-06 39.8 5.0 22 215-236 216-238 (338)
398 PHA02865 MHC-like TNF binding 93.3 0.91 2E-05 35.8 8.4 21 53-73 216-238 (338)
399 PF06328 Lep_receptor_Ig: Ig-l 92.7 0.91 2E-05 28.2 6.4 68 42-113 9-81 (89)
400 KOG0613|consensus 92.7 0.46 1E-05 43.7 6.9 77 207-289 343-420 (1205)
401 PF06328 Lep_receptor_Ig: Ig-l 92.6 0.87 1.9E-05 28.3 6.2 67 205-280 10-80 (89)
402 PF02124 Marek_A: Marek's dise 91.8 4 8.6E-05 30.0 12.1 24 216-240 92-117 (211)
403 PF11465 Receptor_2B4: Natural 91.3 0.4 8.8E-06 30.5 3.6 28 262-289 71-98 (108)
404 PF05790 C2-set: Immunoglobuli 91.1 2.2 4.9E-05 25.8 8.9 38 65-114 26-63 (80)
405 PHA03052 Hypothetical protein; 89.6 2.6 5.5E-05 24.3 5.5 35 43-77 4-41 (69)
406 PHA03189 UL14 tegument protein 89.1 1.4 3E-05 33.9 5.5 78 205-285 59-156 (348)
407 PF00801 PKD: PKD domain; Int 88.6 2.2 4.8E-05 24.8 5.3 60 208-289 6-68 (69)
408 PF06832 BiPBP_C: Penicillin-B 88.4 4.2 9.2E-05 25.2 6.7 55 213-290 31-86 (89)
409 PHA03282 envelope glycoprotein 83.7 24 0.00053 29.4 12.1 22 95-116 334-355 (540)
410 PHA03112 IL-18 binding protein 82.9 4.7 0.0001 27.3 5.0 27 211-237 36-63 (141)
411 PF02124 Marek_A: Marek's dise 81.5 19 0.00041 26.6 14.1 142 67-229 8-163 (211)
412 PHA03283 envelope glycoprotein 79.9 16 0.00034 30.9 7.9 70 2-72 138-233 (542)
413 PHA03286 envelope glycoprotein 79.2 30 0.00065 28.7 9.1 83 93-175 126-228 (492)
414 PF05790 C2-set: Immunoglobuli 79.0 2.6 5.6E-05 25.6 2.7 16 3-18 48-63 (80)
415 PHA03189 UL14 tegument protein 78.7 23 0.00051 27.6 8.0 21 43-63 59-79 (348)
416 PF02480 Herpes_gE: Alphaherpe 78.6 2.7 5.9E-05 35.0 3.5 72 1-72 92-189 (439)
417 PHA03286 envelope glycoprotein 77.3 20 0.00043 29.7 7.7 71 2-72 131-225 (492)
418 PF03921 ICAM_N: Intercellular 74.7 18 0.00039 22.6 9.5 81 39-129 6-86 (91)
419 PHA03283 envelope glycoprotein 69.5 65 0.0014 27.5 9.0 82 93-174 133-235 (542)
420 KOG1026|consensus 68.7 26 0.00056 31.6 7.0 34 146-179 202-235 (774)
421 PHA03281 envelope glycoprotein 68.2 65 0.0014 27.7 8.7 82 93-174 297-396 (642)
422 cd05890 Ig2_Nectin-1_like Seco 67.0 28 0.00061 22.0 5.0 62 216-284 23-86 (98)
423 PRK14081 triple tyrosine motif 66.1 1E+02 0.0022 27.7 24.8 123 46-179 300-431 (667)
424 PF15096 G6B: G6B family 63.0 14 0.0003 26.3 3.6 14 268-281 80-93 (224)
425 PHA03240 envelope glycoprotein 54.8 24 0.00052 25.9 3.7 18 93-110 104-121 (258)
426 PHA02935 Hypothetical protein; 53.2 18 0.00038 26.1 2.9 60 2-63 106-167 (349)
427 PF02480 Herpes_gE: Alphaherpe 52.6 13 0.00028 31.1 2.6 82 93-174 88-191 (439)
428 PHA03112 IL-18 binding protein 49.3 84 0.0018 21.6 8.3 26 49-74 36-63 (141)
429 PF06832 BiPBP_C: Penicillin-B 48.8 62 0.0013 19.9 8.2 25 153-178 31-55 (89)
430 PHA03240 envelope glycoprotein 47.6 38 0.00082 24.9 3.8 71 207-278 32-121 (258)
431 PHA03281 envelope glycoprotein 47.5 1.9E+02 0.004 25.2 8.1 71 2-72 302-394 (642)
432 PF02440 Adeno_E3_CR1: Adenovi 46.2 58 0.0012 18.8 5.4 52 148-203 2-63 (63)
433 PF11049 KSHV_K1: Glycoprotein 43.9 34 0.00075 19.7 2.5 21 217-240 2-22 (71)
434 PF01688 Herpes_gI: Alphaherpe 43.7 89 0.0019 22.1 5.1 22 95-116 125-146 (161)
435 PF03921 ICAM_N: Intercellular 43.3 53 0.0011 20.6 3.6 31 139-170 6-37 (91)
436 KOG0200|consensus 42.7 1.5E+02 0.0032 26.5 7.6 22 94-115 117-138 (609)
437 PRK14081 triple tyrosine motif 41.4 2.7E+02 0.0059 25.2 25.0 159 6-177 345-525 (667)
438 PF13220 DUF4028: Protein of u 40.9 23 0.00051 19.2 1.5 17 272-288 8-24 (65)
439 PF10430 Ig_Tie2_1: Tie-2 Ig-l 39.3 72 0.0016 19.8 3.5 24 213-236 15-38 (96)
440 KOG1026|consensus 36.2 80 0.0017 28.7 4.8 73 45-129 201-273 (774)
441 PF05955 Herpes_gp2: Equine he 33.0 1.1E+02 0.0025 21.8 4.2 65 219-285 113-179 (226)
442 PHA03290 envelope glycoprotein 29.3 1.2E+02 0.0025 24.4 4.2 20 2-21 133-152 (357)
443 PHA03282 envelope glycoprotein 27.0 1.3E+02 0.0029 25.4 4.3 23 93-115 123-145 (540)
444 PHA03289 envelope glycoprotein 25.0 1.5E+02 0.0033 23.6 4.1 20 2-21 126-145 (352)
445 PHA03292 envelope glycoprotein 21.9 1.7E+02 0.0038 23.9 4.0 31 2-33 132-162 (413)
446 PHA03290 envelope glycoprotein 21.2 3.5E+02 0.0076 21.9 5.4 23 94-116 129-151 (357)
447 PHA03289 envelope glycoprotein 21.0 3.4E+02 0.0074 21.8 5.3 24 95-118 123-146 (352)
448 COG5475 Uncharacterized small 20.1 1.2E+02 0.0025 16.9 1.9 14 11-24 29-42 (60)
No 1
>KOG3513|consensus
Probab=100.00 E-value=1.5e-39 Score=272.16 Aligned_cols=276 Identities=26% Similarity=0.474 Sum_probs=224.6
Q ss_pred cccCCcCCCeeEEEEEEecccccccccEEEEEeCCCcEEeCCCccEEecCCcEEEEEEEeeeCCCeeEEEECCeEEeecc
Q psy15128 2 ITEVKKSDEGKYQCYVQNMVGERETKPALLTVHAPPSFVVRPQDQKVGLNGIASFQCVAEGSPLPSVFWTQEGSQVLMFP 81 (292)
Q Consensus 2 i~~v~~~D~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~ 81 (292)
|.+++.+|+|.|+|.++|..|..... +.|.|.++|.+...+....+..|++++|.|.+.|.|.|.|.|++++..+. .
T Consensus 298 I~nv~~~D~G~Y~C~AeN~~G~~~~~-~~v~v~a~P~w~~~~~d~~~~~gs~v~~eC~a~g~P~p~v~WlkNg~pl~--~ 374 (1051)
T KOG3513|consen 298 IPNVQYEDAGEYECIAENSRGSATHS-GHVTVYAPPYWLQKPQDTEADTGSNVTLECKASGKPNPTVKWLKNGEPLE--P 374 (1051)
T ss_pred ecccCcCCCeEEEEEEecccccceee-EEEEEecCchhhcccceeEecCCCCeEEEEEecCCCCCceEEeeCCeecC--c
Confidence 78999999999999999999965555 99999999999999999999999999999999999999999999998874 2
Q ss_pred CCCcceeEEeeecEEEEccCCCCCCeEEEEEEEeCCcCeeEEEEEEEEeecCCCCCeEEeCCCCc--eecCCCeEEEEeE
Q psy15128 82 GNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVTSVEDTPPPIVQVGPSNQ--TLPLHSVAFLPCQ 159 (292)
Q Consensus 82 ~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~--~~~~g~~v~l~C~ 159 (292)
.....+. ....+.|+|.+++..|+|.|.|.|+|..|....++.|.|... +|.+...+... .+..|..+.|.|.
T Consensus 375 ~~r~~~~-~i~~g~L~is~v~~~dsg~YQC~A~Nk~G~i~anA~L~V~a~----~P~f~~~p~~~~~~a~~g~~v~i~C~ 449 (1051)
T KOG3513|consen 375 AERDPRY-KIDDGTLIISNVQESDSGVYQCIAENKYGTIYANAELKVLAS----APVFPLNPVERKVMAVVGGTVTIDCK 449 (1051)
T ss_pred cCCCcce-EEeCCEEEEEecccccCeEEEeeeecccceEeeeeEEEEEcc----CCCCCCCccceEEEEEeCCeEEEeec
Confidence 2222223 334679999999999999999999999999999999998752 44454444433 5678999999999
Q ss_pred eccCCCCceEEEeCCeeCCCCCccEEEcCCCcEEEEeeecCCCC-----------------------------CCcceEE
Q psy15128 160 AVGSPPPHIRWYKNGNSLPPEDTRINVSSSGSLQIDVLRDDFRA-----------------------------EPKDTRV 210 (292)
Q Consensus 160 ~~~~p~~~~~W~~~~~~l~~~~~~~~~~~~~~l~i~~~~~~d~g-----------------------------~~~~~~~ 210 (292)
..+.|.|.+.|.+++.. .....++.+..+|+|.|.+++.+|+| .+....+
T Consensus 450 ~~asP~p~~~W~k~~~~-~~~~~r~~i~edGtL~I~n~t~~DaG~YtC~A~N~~G~a~~~~~L~Vkd~tri~~~P~~~~v 528 (1051)
T KOG3513|consen 450 PFASPKPKVSWLKGGEK-LLQSGRIRILEDGTLEISNVTRSDAGKYTCVAENKLGKAESTGNLIVKDATRITLAPSNTDV 528 (1051)
T ss_pred cCCCCcceEEEEcCCcc-cccCceEEECCCCcEEecccCcccCcEEEEEEEcccCccceEEEEEEecCceEEeccchhhh
Confidence 99999999999999884 34458899999999999999999999 3356667
Q ss_pred eCCCceEEEeeCCC-CCCCCeEEEeEcCeEeccCCCceEEecCCCccccccccccccccccccccceeEEEEeecccccc
Q psy15128 211 ASGETALLECGPPK-GQPEPTLHWKKNGQFIDLESSKRVSILGDPWFDSRRSRSIFGSVLGALSDDQWKLIAKNIRNQQQ 289 (292)
Q Consensus 211 ~~g~~~~l~C~~~~-~~p~~~~~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~a~n~~g~~~ 289 (292)
..|+.++|.|.+.. ....+.|.|.+||+.+............++. ....|.|..++..|+|.|.|+|+-...+.+
T Consensus 529 ~~g~~v~l~Ce~shD~~ld~~f~W~~nG~~id~~~~~~~~~~~~~~----~~g~L~i~nv~l~~~G~Y~C~aqT~~Ds~s 604 (1051)
T KOG3513|consen 529 KVGESVTLTCEASHDPSLDITFTWKKNGRPIDFNPDGDHFEINDGS----DSGRLTIANVSLEDSGKYTCVAQTALDSAS 604 (1051)
T ss_pred ccCceEEEEeecccCCCcceEEEEEECCEEhhccCCCCceEEeCCc----CccceEEEeeccccCceEEEEEEEeecchh
Confidence 89999999999842 2446689999999988644433322222221 113588999999999999999998776654
Q ss_pred c
Q psy15128 290 H 290 (292)
Q Consensus 290 ~ 290 (292)
.
T Consensus 605 ~ 605 (1051)
T KOG3513|consen 605 A 605 (1051)
T ss_pred c
Confidence 3
No 2
>KOG3513|consensus
Probab=100.00 E-value=1e-36 Score=255.40 Aligned_cols=268 Identities=25% Similarity=0.422 Sum_probs=214.3
Q ss_pred cccCCcCCCeeEEEEEEeccccc--ccccEEEEEe-------CCCcEEeC-CCccEEecCCcEEEEEEEeeeCCCeeEEE
Q psy15128 2 ITEVKKSDEGKYQCYVQNMVGER--ETKPALLTVH-------APPSFVVR-PQDQKVGLNGIASFQCVAEGSPLPSVFWT 71 (292)
Q Consensus 2 i~~v~~~D~G~Y~C~~~~~~~~~--~~~~~~l~v~-------~~p~~~~~-~~~~~~~~g~~~~l~C~~~~~~~~~v~W~ 71 (292)
+.+|..+|.+.|.|.+.+..-.. ....+.|.+. .+|.+... +.......|+.+.|.|.+.|.|.|.+.|+
T Consensus 197 fs~V~~~D~~~Y~C~a~~~~~~~~v~~~~~~L~~~~~~~~~~~~P~i~~~~p~~~~a~~G~~v~LECfA~G~P~P~i~W~ 276 (1051)
T KOG3513|consen 197 FSNVETSDFGNYICSATFPSTQTIVQGPPFPLIVRSNNVMREYAPKILVPFPETETALKGQSVKLECFALGNPTPQIKWR 276 (1051)
T ss_pred EeecchhhcCceEEEEEchhhcccccCCceeEEEcccccccccCCccccCCCCcccccCCCeEEEEEEecCCCCCcEEEE
Confidence 56899999999999999743221 2222666662 34555543 34667888999999999999999999999
Q ss_pred ECCeEEeeccCCCcceeEEeeecEEEEccCCCCCCeEEEEEEEeCCcCeeEEEEEEEEeecCCCCCeEEeCCCCceecCC
Q psy15128 72 QEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVTSVEDTPPPIVQVGPSNQTLPLH 151 (292)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~g 151 (292)
|.+.... ............|.|.+++.+|+|.|.|.|.|..|.......+.+.. +|.....+....+-.|
T Consensus 277 k~~g~~~-----~~r~~~~~~~~vL~I~nv~~~D~G~Y~C~AeN~~G~~~~~~~v~v~a-----~P~w~~~~~d~~~~~g 346 (1051)
T KOG3513|consen 277 KVDGKPP-----PRRATYSNYGKVLKIPNVQYEDAGEYECIAENSRGSATHSGHVTVYA-----PPYWLQKPQDTEADTG 346 (1051)
T ss_pred eCCCCCC-----CcceeeeccccEEEecccCcCCCeEEEEEEecccccceeeEEEEEec-----CchhhcccceeEecCC
Confidence 9876421 11112223456899999999999999999999999877777777764 6677778888889999
Q ss_pred CeEEEEeEeccCCCCceEEEeCCeeCCCCCc-cEEEcCCCcEEEEeeecCCCCCC-------------------------
Q psy15128 152 SVAFLPCQAVGSPPPHIRWYKNGNSLPPEDT-RINVSSSGSLQIDVLRDDFRAEP------------------------- 205 (292)
Q Consensus 152 ~~v~l~C~~~~~p~~~~~W~~~~~~l~~~~~-~~~~~~~~~l~i~~~~~~d~g~~------------------------- 205 (292)
+.++|.|.+.|.|.|.++|++||.++..... .-.....+.|.|.+++..|+|.|
T Consensus 347 s~v~~eC~a~g~P~p~v~WlkNg~pl~~~~r~~~~~i~~g~L~is~v~~~dsg~YQC~A~Nk~G~i~anA~L~V~a~~P~ 426 (1051)
T KOG3513|consen 347 SNVTLECKASGKPNPTVKWLKNGEPLEPAERDPRYKIDDGTLIISNVQESDSGVYQCIAENKYGTIYANAELKVLASAPV 426 (1051)
T ss_pred CCeEEEEEecCCCCCceEEeeCCeecCccCCCcceEEeCCEEEEEecccccCeEEEeeeecccceEeeeeEEEEEccCCC
Confidence 9999999999999999999999999986432 11233678999999999999922
Q ss_pred -------cceEEeCCCceEEEeeCCCCCCCCeEEEeEcCeEeccCCCceEEecCCCccccccccccccccccccccceeE
Q psy15128 206 -------KDTRVASGETALLECGPPKGQPEPTLHWKKNGQFIDLESSKRVSILGDPWFDSRRSRSIFGSVLGALSDDQWK 278 (292)
Q Consensus 206 -------~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~ 278 (292)
....+..|..+.|.|.. .+.|.+.++|.++++.+ .++.|+.+.+++ .|.|.+++.+|+|.|+
T Consensus 427 f~~~p~~~~~~a~~g~~v~i~C~~-~asP~p~~~W~k~~~~~--~~~~r~~i~edG--------tL~I~n~t~~DaG~Yt 495 (1051)
T KOG3513|consen 427 FPLNPVERKVMAVVGGTVTIDCKP-FASPKPKVSWLKGGEKL--LQSGRIRILEDG--------TLEISNVTRSDAGKYT 495 (1051)
T ss_pred CCCCccceEEEEEeCCeEEEeecc-CCCCcceEEEEcCCccc--ccCceEEECCCC--------cEEecccCcccCcEEE
Confidence 23456789999999998 99999999999998844 377888887776 5889999999999999
Q ss_pred EEEeeccccccc
Q psy15128 279 LIAKNIRNQQQH 290 (292)
Q Consensus 279 C~a~n~~g~~~~ 290 (292)
|+|+|..|++..
T Consensus 496 C~A~N~~G~a~~ 507 (1051)
T KOG3513|consen 496 CVAENKLGKAES 507 (1051)
T ss_pred EEEEcccCccce
Confidence 999999999864
No 3
>KOG4221|consensus
Probab=100.00 E-value=2.6e-31 Score=222.92 Aligned_cols=269 Identities=26% Similarity=0.412 Sum_probs=218.0
Q ss_pred CcCCCeeEEEEEEec-ccccccccEEEEEeCCCcEEeCCCccEEecCCcEEEEEEEeeeCCCeeEEEECCeEEeeccCCC
Q psy15128 6 KKSDEGKYQCYVQNM-VGERETKPALLTVHAPPSFVVRPQDQKVGLNGIASFQCVAEGSPLPSVFWTQEGSQVLMFPGNA 84 (292)
Q Consensus 6 ~~~D~G~Y~C~~~~~-~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~ 84 (292)
...|+|.|+|.+.-. .|...+..+.|.+...+.+...+.+..+..|+++.|.|.+.+.|.+.+.|.++...+. .
T Consensus 109 ~~~~eg~Yqc~atv~~~gsi~Sr~a~v~~a~~~~f~~~~~~~t~~~g~ta~f~c~vn~e~~p~i~w~kn~~pl~-----~ 183 (1381)
T KOG4221|consen 109 NKVDEGVYQCLATVEDVGSILSRTAKVALAGLADFALQPESTTLLYGQTALFSCEVNAEPVPTIMWLKNDQPLP-----L 183 (1381)
T ss_pred ccccCceEEEEEEccccceeecceEEEEecccCccccCccceeEecCCcEEEEEEEcCccCceeEEeccccccc-----C
Confidence 347999999999866 5666666688999999999999999999999999999999998888999999987653 2
Q ss_pred cceeEEeeecEEEEccCCCCCCeEEEEEEEeCCcC-eeEEEEEEEEe-ecCCCCCeEEeCCCCceecCCCeEEEEeEecc
Q psy15128 85 YGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGS-TTVRAFLQVTS-VEDTPPPIVQVGPSNQTLPLHSVAFLPCQAVG 162 (292)
Q Consensus 85 ~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~~~-~~~~~~l~v~~-~~~~~~~~~~~~~~~~~~~~g~~v~l~C~~~~ 162 (292)
..+.-...++.|.|..++..|.|.|+|.+.+.... .+..+.|++.. ........+...|....+..|+.+.|.|.+.+
T Consensus 184 ~~r~i~lpsG~L~I~~~qp~d~g~yrc~vt~g~~~r~S~~a~ltv~s~~~~~~~~~fl~~p~~~~v~~g~~v~leCvvs~ 263 (1381)
T KOG4221|consen 184 DSRVIVLPSGALEISGLQPSDTGEYRCVVTGGASQRTSNEAELTVLSDPGALNKLVFLDEPSNAVVVEGDDVVLECVVSG 263 (1381)
T ss_pred CCcEEEcCCCcEEecccccCCCceEEEEEecCCcCCccceeEEEecCCcccccceeeecCCCccccccCCcEEEEEEecC
Confidence 23566677889999999999999999999975433 23445666652 11122334566677888899999999999999
Q ss_pred CCCCceEEEeCCeeCCCCCccEEEcCCCcEEEEeeecCCCC-----------------------------CCcceEEeCC
Q psy15128 163 SPPPHIRWYKNGNSLPPEDTRINVSSSGSLQIDVLRDDFRA-----------------------------EPKDTRVASG 213 (292)
Q Consensus 163 ~p~~~~~W~~~~~~l~~~~~~~~~~~~~~l~i~~~~~~d~g-----------------------------~~~~~~~~~g 213 (292)
.|.|.|.|.+|+..+.....++.....+.|.|.+++.+|+| .+....+.++
T Consensus 264 ~p~p~v~Wlrng~~i~~ds~rivl~g~~slliS~a~~~dSg~YtC~Atn~~D~idasaev~V~a~P~~~~~p~~l~A~e~ 343 (1381)
T KOG4221|consen 264 VPKPSVKWLRNGEKISVDSYRIVLVGGSSLLISNATDDDSGKYTCRATNTNDSIDASAEVTVLAPPGFTKAPTTLVAHES 343 (1381)
T ss_pred CCCCceEEeeCCeeeeecceEEEEecccceEEeccccccCceEEEEecCCCcccccceEEEEEcCCCCCCCCcceeeeec
Confidence 99999999999999987666777777789999999999999 3356677889
Q ss_pred CceEEEeeCCCCCCCCeEEEeEcCeEeccCCCceEEecCCCccccccccccccccccccccceeEEEEeeccccccc
Q psy15128 214 ETALLECGPPKGQPEPTLHWKKNGQFIDLESSKRVSILGDPWFDSRRSRSIFGSVLGALSDDQWKLIAKNIRNQQQH 290 (292)
Q Consensus 214 ~~~~l~C~~~~~~p~~~~~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~a~n~~g~~~~ 290 (292)
.++.|+|.+ .+.|.+.+.|+|||..+.. +..+.+..++ .|.|..+-..|+|.|.|+|+|.+|.+..
T Consensus 344 ~die~ec~~-~g~p~p~v~w~kNgd~~ip--sdy~ki~~~~--------~lrIlgi~~sdeg~yQcvaen~~G~a~a 409 (1381)
T KOG4221|consen 344 MDIEFECPV-SGKPIPTVRWYKNGDRIIP--SDYFKIVGGG--------NLRILGIVKSDEGFYQCVAENDAGSAQA 409 (1381)
T ss_pred cceeEeCCC-CCCCcceEEEEecCcccCc--ccceEecCCC--------CcEEEEEecccchhhhhhhccCcccccc
Confidence 999999998 8889999999999988863 4555555553 2667777888999999999999998754
No 4
>KOG4222|consensus
Probab=99.97 E-value=2e-31 Score=222.33 Aligned_cols=270 Identities=32% Similarity=0.573 Sum_probs=224.8
Q ss_pred CcccCCcCCCeeEEEEEEecccccccccEEEEEeCCCcEEeCCCccEEecCCcEEEEEEEeeeCCCeeEEEECCeEEeec
Q psy15128 1 MITEVKKSDEGKYQCYVQNMVGERETKPALLTVHAPPSFVVRPQDQKVGLNGIASFQCVAEGSPLPSVFWTQEGSQVLMF 80 (292)
Q Consensus 1 ~i~~v~~~D~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~ 80 (292)
+|.|++.+|+|+|.|.+.|..|...+....|.|..+|.+...+....+..|..+.+.|.+.|.|.+.+.|.+++..+.
T Consensus 190 lIsnvrksD~GtY~CVatNmvG~ReS~~A~lsv~e~P~f~~rp~~~~v~~g~~~~f~c~v~GdP~P~Vrwkk~~~~~P-- 267 (1281)
T KOG4222|consen 190 LISNVRKSDEGTYACVATNMVGERESIPARLSVQEKPWFWKRPKDLAVLVGAAAEFDCRVGGDPQPTVRWKKDDPSLP-- 267 (1281)
T ss_pred EEeccccCCCceeeeeecccccccccccceeeeccCCccccccccceeecccccccccccCCCCCCceeeeccCCCCC--
Confidence 589999999999999999999999888899999999999999999999999999999999999999999999776553
Q ss_pred cCCCcceeEE-eeecEEEEccCCCCCCeEEEEEEEeCCcCeeEEEEEEEEeecCCCCCeEEeCCCCceecCCCeEEEEeE
Q psy15128 81 PGNAYGHLHV-TQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVTSVEDTPPPIVQVGPSNQTLPLHSVAFLPCQ 159 (292)
Q Consensus 81 ~~~~~~~~~~-~~~~~l~i~~~~~~d~g~Y~C~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~g~~v~l~C~ 159 (292)
..+... ....+|.|.+++..|.|.|.|.+.|..|.......++|.+ +|.+...+....+..|..++|.|.
T Consensus 268 ----~~ry~i~~d~qtl~i~r~tp~deg~y~C~a~n~vG~l~asa~ltV~a-----pP~f~kkp~dq~v~lg~~vt~pc~ 338 (1281)
T KOG4222|consen 268 ----RSRYSILDDTQTLRIDRVTPTDEGTYVCPAENLVGGLEASATLTVQA-----PPSFGKKPRDQKVALGGTVTFPCE 338 (1281)
T ss_pred ----ccceeeeeccccccccccCCCcccceeeeccccccccccccceEEec-----CcccccccCccccccCceEEeeee
Confidence 122222 2336899999999999999999999999999999999875 777777788888899999999999
Q ss_pred eccCCCCceEEEeCCeeCCC-------CCccEEEcCCCcEEEEeeecCCCC-----------------------------
Q psy15128 160 AVGSPPPHIRWYKNGNSLPP-------EDTRINVSSSGSLQIDVLRDDFRA----------------------------- 203 (292)
Q Consensus 160 ~~~~p~~~~~W~~~~~~l~~-------~~~~~~~~~~~~l~i~~~~~~d~g----------------------------- 203 (292)
+.++|+|.+.|.++|..-.- ...+..+...++|.|.+++..|.|
T Consensus 339 ~~gnP~PavfW~keg~q~llf~~~p~~~~~r~svs~~g~L~it~v~~~d~g~Yvcq~~~~~~ss~~~a~~~qt~~~~~~r 418 (1281)
T KOG4222|consen 339 TLGNPPPAVFWLKEGSQDLLFSASPPSSNGRGSVSPTGTLTITNVRQSDEGYYVCQTQTSAGSSLTKAYLEQTDVLTDSR 418 (1281)
T ss_pred cCCCCCcceEEeccCcceecccCCCCCcCccceecCCCCcccccccccccceEeecccccccccccceeEEEEeeeccCC
Confidence 99999999999997653211 124556677789999999999999
Q ss_pred -------CCcceEEeCCCceEEEeeCCCCCCCCeEEEeEcCeEeccCCCceEEecCCCccccccccccccccccccccce
Q psy15128 204 -------EPKDTRVASGETALLECGPPKGQPEPTLHWKKNGQFIDLESSKRVSILGDPWFDSRRSRSIFGSVLGALSDDQ 276 (292)
Q Consensus 204 -------~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~ 276 (292)
.+.+.+..++..+.|.|.+ .+.|.+.+.|.++|-.+...+ .+..+. ...+|.|......|.|.
T Consensus 419 Ppp~i~~g~~nQtl~v~s~a~l~c~a-tg~P~p~i~wl~dg~~v~~~d-~~~s~~--------~~~~l~i~dl~~~DtG~ 488 (1281)
T KOG4222|consen 419 PPPIIEQGPANQTLPVGSTASLPCSA-TGAPTPNISWLKDGCNVMNPD-SRISQQ--------EIGSLRIRDLKGPDTGR 488 (1281)
T ss_pred CCceeeecccccccccCcccccChhh-hCCCCCCchhhhcccccccCC-ccccee--------eeceeeeeeeecCCCcc
Confidence 1244556678899999998 899999999999987664222 333222 22368899999999999
Q ss_pred eEEEEeecccccccC
Q psy15128 277 WKLIAKNIRNQQQHG 291 (292)
Q Consensus 277 y~C~a~n~~g~~~~~ 291 (292)
|+|+|.++.|+.+.+
T Consensus 489 YTc~as~~~ges~wS 503 (1281)
T KOG4222|consen 489 YTCIASDESGESTWS 503 (1281)
T ss_pred eeeeccCcccccccc
Confidence 999999999987643
No 5
>PHA02785 IL-beta-binding protein; Provisional
Probab=99.97 E-value=3.4e-29 Score=194.74 Aligned_cols=232 Identities=14% Similarity=0.244 Sum_probs=162.1
Q ss_pred ccEEecCCcEEEEEEE-----eeeCCCeeEEEECCeEEeeccCCCcceeEEeeecEEEEccCCCCCCeEEEEEEEeCCcC
Q psy15128 45 DQKVGLNGIASFQCVA-----EGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGS 119 (292)
Q Consensus 45 ~~~~~~g~~~~l~C~~-----~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~~~ 119 (292)
...+.+|+.+.|.|.+ .|.|.+.+.|+|++.... ..........|.|.++..+|+|.|+|.+.|..+.
T Consensus 35 ~~~~~~ge~~~l~C~~~~~~~~g~p~~~i~W~K~g~~~~-------~~~~~~~g~~l~i~~~~~~DsG~Y~C~a~N~~g~ 107 (326)
T PHA02785 35 SFMELENEPVILPCPQINTLSSGYNILDILWEKRGADND-------RIIPIDNGSNMLILNPTQSDSGIYICITKNETYC 107 (326)
T ss_pred hhhhhcCCCEEEECCCccccccCCCCceEEEEECCCccc-------eEEEccCCceEEEcccCcccCeEEEEEEECCCcc
Confidence 3456679999999986 577888999999874321 1112223345889999999999999999999887
Q ss_pred eeEEEEEEEEeecCCCCCeEEeCCCCceecCCCeEEEEeEe-----ccCCCCceEEEeCCeeCCCCCccEEEcCCCcEEE
Q psy15128 120 TTVRAFLQVTSVEDTPPPIVQVGPSNQTLPLHSVAFLPCQA-----VGSPPPHIRWYKNGNSLPPEDTRINVSSSGSLQI 194 (292)
Q Consensus 120 ~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~g~~v~l~C~~-----~~~p~~~~~W~~~~~~l~~~~~~~~~~~~~~l~i 194 (292)
....+.|.|.... ++.+...+....+.+|..+.|.|.. .+.|++.+.|++++ .+. ..++....++.|.|
T Consensus 108 ~~~s~~L~V~~~~---~~~~~~~~~~~~~~~g~~~~i~C~~~~~~~~~~~~~~i~W~k~~-~~~--~~r~~~~~~~~L~i 181 (326)
T PHA02785 108 DMMSLNLTIVSVS---ESNIDLISYPQIVNERSTGEMVCPNINAFIASNVNADIIWSGHR-RLR--NKRLKQRTPGIITI 181 (326)
T ss_pred eEEEEEEEEEecC---CCccceeeccceecccCcEEEECCChhhcccCCCCceEEEccCC-ccC--CcceEecCCCeEEE
Confidence 7777777775432 1222222333446789999999972 35688899999864 232 24454555678999
Q ss_pred EeeecCCCCCC-----------------------------------cceEEeCCCceEEEeeCCCCCCC---CeEEEeEc
Q psy15128 195 DVLRDDFRAEP-----------------------------------KDTRVASGETALLECGPPKGQPE---PTLHWKKN 236 (292)
Q Consensus 195 ~~~~~~d~g~~-----------------------------------~~~~~~~g~~~~l~C~~~~~~p~---~~~~W~~~ 236 (292)
.++..+|+|.| ....+..|+.++|.|.| .+.|. +.+.|++|
T Consensus 182 ~~v~~~d~G~Y~C~~~n~~g~~~~~~t~~v~l~V~~~~~pp~~~~p~~~~~~~G~~v~L~C~a-~g~P~~~~~~v~W~kn 260 (326)
T PHA02785 182 EDVRKNDAGYYTCVLKYIYGDKTYNVTRIVKLEVRDRIIPPTMQLPEGVVTSIGSNLTIACRV-SLRPPTTDADVFWISN 260 (326)
T ss_pred eecChhhCeEEEEEEEeccCCEEEeEEEEEEEEEeccCCCceecCCCcEEecCCCcEEEEEEE-ECCCCCCCceEEEEEC
Confidence 99999999922 22234569999999999 66665 48999999
Q ss_pred CeEeccCC---CceEEecCCCcc---ccccccccccccccccccceeEEEEeeccccccc
Q psy15128 237 GQFIDLES---SKRVSILGDPWF---DSRRSRSIFGSVLGALSDDQWKLIAKNIRNQQQH 290 (292)
Q Consensus 237 g~~~~~~~---~~~~~~~~~~~~---~~~~~~~l~i~~~~~~~~g~y~C~a~n~~g~~~~ 290 (292)
|+.|.... ..++......+. .......|.|..+..+|+|.|+|+|.|..|....
T Consensus 261 g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~V~~~D~G~Y~C~A~n~~~~~~~ 320 (326)
T PHA02785 261 GMYYEEDDEDGDGRISVANKIYTTDKRRVITSRLNINPVKEEDATTFTCMAFTIPSISKT 320 (326)
T ss_pred CEECCCcCCCCceeEEEecCccccccceeeeEEEEECCcchhcCeeeEEEEEeccCceEe
Confidence 99885322 123333322111 0112347999999999999999999999976654
No 6
>KOG4221|consensus
Probab=99.96 E-value=1.6e-27 Score=200.40 Aligned_cols=192 Identities=27% Similarity=0.477 Sum_probs=157.9
Q ss_pred cccCCcCCCeeEEEEEEecccccccccEEEEEeCCC------cEEeCCCccEEecCCcEEEEEEEeeeCCCeeEEEECCe
Q psy15128 2 ITEVKKSDEGKYQCYVQNMVGERETKPALLTVHAPP------SFVVRPQDQKVGLNGIASFQCVAEGSPLPSVFWTQEGS 75 (292)
Q Consensus 2 i~~v~~~D~G~Y~C~~~~~~~~~~~~~~~l~v~~~p------~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~v~W~~~~~ 75 (292)
|.++++.|.|.|+|.+.+......+..+.|.|..-| .+...+....+..|+++.|.|.+.+.|.|.|.|.|++.
T Consensus 197 I~~~qp~d~g~yrc~vt~g~~~r~S~~a~ltv~s~~~~~~~~~fl~~p~~~~v~~g~~v~leCvvs~~p~p~v~Wlrng~ 276 (1381)
T KOG4221|consen 197 ISGLQPSDTGEYRCVVTGGASQRTSNEAELTVLSDPGALNKLVFLDEPSNAVVVEGDDVVLECVVSGVPKPSVKWLRNGE 276 (1381)
T ss_pred ecccccCCCceEEEEEecCCcCCccceeEEEecCCcccccceeeecCCCccccccCCcEEEEEEecCCCCCceEEeeCCe
Confidence 789999999999999999877766776899998433 24567788889999999999999999999999999998
Q ss_pred EEeeccCCCcceeEEeeecEEEEccCCCCCCeEEEEEEEeCCcCeeEEEEEEEEeecCCCCCeEEeCCCCceecCCCeEE
Q psy15128 76 QVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVTSVEDTPPPIVQVGPSNQTLPLHSVAF 155 (292)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~g~~v~ 155 (292)
.+.... .+......+.|.|.+++..|+|.|+|+|.|........+.+.|.. +|.+...|......++..+.
T Consensus 277 ~i~~ds----~rivl~g~~slliS~a~~~dSg~YtC~Atn~~D~idasaev~V~a-----~P~~~~~p~~l~A~e~~die 347 (1381)
T KOG4221|consen 277 KISVDS----YRIVLVGGSSLLISNATDDDSGKYTCRATNTNDSIDASAEVTVLA-----PPGFTKAPTTLVAHESMDIE 347 (1381)
T ss_pred eeeecc----eEEEEecccceEEeccccccCceEEEEecCCCcccccceEEEEEc-----CCCCCCCCcceeeeecccee
Confidence 875332 344455567899999999999999999998655556667777764 57777788888888999999
Q ss_pred EEeEeccCCCCceEEEeCCeeCCCCCccEEEcCCCcEEEEeeecCCCC
Q psy15128 156 LPCQAVGSPPPHIRWYKNGNSLPPEDTRINVSSSGSLQIDVLRDDFRA 203 (292)
Q Consensus 156 l~C~~~~~p~~~~~W~~~~~~l~~~~~~~~~~~~~~l~i~~~~~~d~g 203 (292)
|.|.+.+.|.|.+.|+|+|..+.+. ..+++..++.|+|.-+-..|+|
T Consensus 348 ~ec~~~g~p~p~v~w~kNgd~~ips-dy~ki~~~~~lrIlgi~~sdeg 394 (1381)
T KOG4221|consen 348 FECPVSGKPIPTVRWYKNGDRIIPS-DYFKIVGGGNLRILGIVKSDEG 394 (1381)
T ss_pred EeCCCCCCCcceEEEEecCcccCcc-cceEecCCCCcEEEEEecccch
Confidence 9999999999999999999988773 5566666666888777777776
No 7
>KOG4194|consensus
Probab=99.95 E-value=1.5e-27 Score=188.15 Aligned_cols=199 Identities=28% Similarity=0.509 Sum_probs=165.4
Q ss_pred cccCCcCCCeeEEEEEEecccccccccEEEEEeCCCcEEeCCCccEEecCCcEEEEEEEeeeCCCeeEEEECCeEEeecc
Q psy15128 2 ITEVKKSDEGKYQCYVQNMVGERETKPALLTVHAPPSFVVRPQDQKVGLNGIASFQCVAEGSPLPSVFWTQEGSQVLMFP 81 (292)
Q Consensus 2 i~~v~~~D~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~ 81 (292)
+.||+-.|+|.|+|.+.|..|...+..++|+|...|.+...|.+..+..|+.+.|.|.+.|.|.|.|.|.|+|..- ++
T Consensus 578 L~nVt~td~grYQCVvtN~FGStysqk~KltV~~~PsFtktP~dltl~tg~mArl~CaAtG~P~PeIawqkdggtd--FP 655 (873)
T KOG4194|consen 578 LDNVTFTDEGRYQCVVTNHFGSTYSQKAKLTVNQAPSFTKTPEDLTLRTGQMARLECAATGHPRPEIAWQKDGGTD--FP 655 (873)
T ss_pred eeeeecccCceEEEEEecccCcchhheeEEEeeccCccccCcccceeecccceeeeeeccCCCCcceeehhcCCCC--Cc
Confidence 5689999999999999999999988889999999999999999999999999999999999999999999987641 12
Q ss_pred CCCcceeEEe-eecEEEEccCCCCCCeEEEEEEEeCCcCeeEEEEEEEEeecCCCCCeEEeCCCCceecCCCeEEEEeEe
Q psy15128 82 GNAYGHLHVT-QEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVTSVEDTPPPIVQVGPSNQTLPLHSVAFLPCQA 160 (292)
Q Consensus 82 ~~~~~~~~~~-~~~~l~i~~~~~~d~g~Y~C~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~g~~v~l~C~~ 160 (292)
.....+.... .+..+.|.+++.+|.|.|+|.|.|..|..+.++++.|.. .|.+..+.....+..|+++.|.|.+
T Consensus 656 AA~eRRl~Vmpedd~f~Itnvk~eD~GiYtC~A~n~AG~isanAtL~V~e-----~p~f~~PL~~~~V~~get~vlqC~a 730 (873)
T KOG4194|consen 656 AARERRLHVMPEDDVFFITNVKIEDQGIYTCTAQNVAGQISANATLTVLE-----TPSFSIPLEDQLVVVGETLVLQCLA 730 (873)
T ss_pred hhhhheeeecCCCCEEEEecccccccceeEEeeeccccceeeceEEEEec-----CCcccccccceEEEecceEEEEEec
Confidence 2222233332 355899999999999999999999999999999999875 5555566677889999999999999
Q ss_pred ccCCC-CceEEEeCCeeCCCCCccEEEcCCCcEEEEeeecCCCCCCcc
Q psy15128 161 VGSPP-PHIRWYKNGNSLPPEDTRINVSSSGSLQIDVLRDDFRAEPKD 207 (292)
Q Consensus 161 ~~~p~-~~~~W~~~~~~l~~~~~~~~~~~~~~l~i~~~~~~d~g~~~~ 207 (292)
.+.|. |++.|+|+++++.-.........+.-|.+.+...+|+|.|..
T Consensus 731 ~~~~a~pr~~W~k~d~pil~t~rh~f~d~dQllvv~~~~~~daG~yTc 778 (873)
T KOG4194|consen 731 EGAPADPRLEWFKEDKPILITERHTFPDGDQLLVVKENLVEDAGIYTC 778 (873)
T ss_pred CCCCCCccccccCCCCceEEeecccCCCCCeEEEEEehhhhhcceEEE
Confidence 98877 999999999887654333333344467888888999997753
No 8
>KOG4222|consensus
Probab=99.95 E-value=5.6e-27 Score=196.14 Aligned_cols=267 Identities=25% Similarity=0.440 Sum_probs=209.0
Q ss_pred CCeeEEEEEEecccccccccEEEEEeC-CCcEEeCCCccEEecCCcEEEEEEE-eeeCCCeeEEEECCeEEeeccCCCcc
Q psy15128 9 DEGKYQCYVQNMVGERETKPALLTVHA-PPSFVVRPQDQKVGLNGIASFQCVA-EGSPLPSVFWTQEGSQVLMFPGNAYG 86 (292)
Q Consensus 9 D~G~Y~C~~~~~~~~~~~~~~~l~v~~-~p~~~~~~~~~~~~~g~~~~l~C~~-~~~~~~~v~W~~~~~~~~~~~~~~~~ 86 (292)
|.|.|+|.+.|..|...+....|.+.. +..+-+.+....+..|+.+.|.|.- .+.|.+.+.|.|+++.+.. ....
T Consensus 103 d~G~y~cvasn~~g~avSr~a~L~vavlrddfrv~prd~~~a~ge~avlEcgpP~ghpeptvSw~Kdg~pl~~---~~~~ 179 (1281)
T KOG4222|consen 103 DHGVYSCVASNRLGEAVSRGASLIVAVLRDDFRVSPRDVQAAVGEEAVLECGPPRGHPEPTVSWVKDGKPLDH---YDVP 179 (1281)
T ss_pred CCceeEeeecCccceeeecCceEEEEEechhcccCcccccccccceeEEeccCCCCCCCCcceeecCCCcccc---ccce
Confidence 999999999999998887777777764 3346667778888899999999954 5678999999999987742 2233
Q ss_pred eeEEeeecEEEEccCCCCCCeEEEEEEEeCCcCe-eEEEEEEEEeecCCCCCeEEeCCCCceecCCCeEEEEeEeccCCC
Q psy15128 87 HLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGST-TVRAFLQVTSVEDTPPPIVQVGPSNQTLPLHSVAFLPCQAVGSPP 165 (292)
Q Consensus 87 ~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~~~~-~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~p~ 165 (292)
+......+.|.|.++...|.|.|.|.+.|..|.. +..+.+.|.+ .|.+...+....+..|..+.+.|.+.|.|.
T Consensus 180 ~~~lisgG~LlIsnvrksD~GtY~CVatNmvG~ReS~~A~lsv~e-----~P~f~~rp~~~~v~~g~~~~f~c~v~GdP~ 254 (1281)
T KOG4222|consen 180 IIALISGGNLLISNVRKSDEGTYACVATNMVGERESIPARLSVQE-----KPWFWKRPKDLAVLVGAAAEFDCRVGGDPQ 254 (1281)
T ss_pred eEEEecCCcEEEeccccCCCceeeeeecccccccccccceeeecc-----CCccccccccceeecccccccccccCCCCC
Confidence 4556678899999999999999999999988865 3456677764 778888888899999999999999999999
Q ss_pred CceEEEeCCeeCCCCCccEEEcCC-CcEEEEeeecCCCC-----------------------------CCcceEEeCCCc
Q psy15128 166 PHIRWYKNGNSLPPEDTRINVSSS-GSLQIDVLRDDFRA-----------------------------EPKDTRVASGET 215 (292)
Q Consensus 166 ~~~~W~~~~~~l~~~~~~~~~~~~-~~l~i~~~~~~d~g-----------------------------~~~~~~~~~g~~ 215 (292)
|++.|.+++-.++.. +..+..+ .+|.|.+++..|+| .+.+..+..|..
T Consensus 255 P~Vrwkk~~~~~P~~--ry~i~~d~qtl~i~r~tp~deg~y~C~a~n~vG~l~asa~ltV~apP~f~kkp~dq~v~lg~~ 332 (1281)
T KOG4222|consen 255 PTVRWKKDDPSLPRS--RYSILDDTQTLRIDRVTPTDEGTYVCPAENLVGGLEASATLTVQAPPSFGKKPRDQKVALGGT 332 (1281)
T ss_pred CceeeeccCCCCCcc--ceeeeeccccccccccCCCcccceeeeccccccccccccceEEecCcccccccCccccccCce
Confidence 999999988777763 3444444 68999999988888 335666778899
Q ss_pred eEEEeeCCCCCCCCeEEEeEcCeEeccCCCceEEecCCCccccccccccccccccccccceeEEEEeeccccc
Q psy15128 216 ALLECGPPKGQPEPTLHWKKNGQFIDLESSKRVSILGDPWFDSRRSRSIFGSVLGALSDDQWKLIAKNIRNQQ 288 (292)
Q Consensus 216 ~~l~C~~~~~~p~~~~~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~a~n~~g~~ 288 (292)
++|.|.+ .+.|++.+.|.+.|......... -...++...+..+..|.|.++...|.|-|.|-+.+.+|+.
T Consensus 333 vt~pc~~-~gnP~PavfW~keg~q~llf~~~--p~~~~~r~svs~~g~L~it~v~~~d~g~Yvcq~~~~~~ss 402 (1281)
T KOG4222|consen 333 VTFPCET-LGNPPPAVFWLKEGSQDLLFSAS--PPSSNGRGSVSPTGTLTITNVRQSDEGYYVCQTQTSAGSS 402 (1281)
T ss_pred EEeeeec-CCCCCcceEEeccCcceecccCC--CCCcCccceecCCCCcccccccccccceEeeccccccccc
Confidence 9999998 99999999999987543111100 0112222233333479999999999999999998888765
No 9
>KOG4194|consensus
Probab=99.94 E-value=6.2e-26 Score=179.08 Aligned_cols=238 Identities=23% Similarity=0.356 Sum_probs=177.4
Q ss_pred CCcEEeCCCccEEecCCcEEEEEEEeee--CCCeeEEEECCeEEeeccCCCcce-----------eEEeeecEEEEccCC
Q psy15128 36 PPSFVVRPQDQKVGLNGIASFQCVAEGS--PLPSVFWTQEGSQVLMFPGNAYGH-----------LHVTQEGTLRIQGVQ 102 (292)
Q Consensus 36 ~p~~~~~~~~~~~~~g~~~~l~C~~~~~--~~~~v~W~~~~~~~~~~~~~~~~~-----------~~~~~~~~l~i~~~~ 102 (292)
.|++...|.......|++++|+|.+.+. .+-.+.|.+++............. ......+.|.+.+++
T Consensus 503 kpqI~~qPe~~~al~g~nirftC~a~sssasplsi~WR~dnevq~rv~ved~a~~~~q~r~~~~~e~~~~~~~L~L~nVt 582 (873)
T KOG4194|consen 503 KPQIVTQPETVSALIGENIRFTCNAYSSSASPLSIEWRKDNEVQPRVDVEDFATFLSQNRNGTFGEREEYTAILHLDNVT 582 (873)
T ss_pred CcceecCchHhhhhhccceEEEEEeccCCCCCceeEeeeccccCcccchhcchhhhhhhccCccchhhhhhheeeeeeee
Confidence 5677778888888899999999998763 344899999876332111111000 011122369999999
Q ss_pred CCCCeEEEEEEEeCCcCe-eEEEEEEEEeecCCCCCeEEeCCCCceecCCCeEEEEeEeccCCCCceEEEeCCee-CCCC
Q psy15128 103 KEDAGFFVCSALSVAGST-TVRAFLQVTSVEDTPPPIVQVGPSNQTLPLHSVAFLPCQAVGSPPPHIRWYKNGNS-LPPE 180 (292)
Q Consensus 103 ~~d~g~Y~C~~~~~~~~~-~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~p~~~~~W~~~~~~-l~~~ 180 (292)
..|.|.|.|.++|..|.. ...+.++|.. .|.+...|.+..+..|+.+.|.|.+.|.|.|++.|.|+|.. .+..
T Consensus 583 ~td~grYQCVvtN~FGStysqk~KltV~~-----~PsFtktP~dltl~tg~mArl~CaAtG~P~PeIawqkdggtdFPAA 657 (873)
T KOG4194|consen 583 FTDEGRYQCVVTNHFGSTYSQKAKLTVNQ-----APSFTKTPEDLTLRTGQMARLECAATGHPRPEIAWQKDGGTDFPAA 657 (873)
T ss_pred cccCceEEEEEecccCcchhheeEEEeec-----cCccccCcccceeecccceeeeeeccCCCCcceeehhcCCCCCchh
Confidence 999999999999998875 3456677654 77888889999999999999999999999999999998776 3322
Q ss_pred -CccEEEc-CCCcEEEEeeecCCCCC-----------------------------CcceEEeCCCceEEEeeCCCCCCC-
Q psy15128 181 -DTRINVS-SSGSLQIDVLRDDFRAE-----------------------------PKDTRVASGETALLECGPPKGQPE- 228 (292)
Q Consensus 181 -~~~~~~~-~~~~l~i~~~~~~d~g~-----------------------------~~~~~~~~g~~~~l~C~~~~~~p~- 228 (292)
..++.+. .+..+.|.++..+|+|. ..+..+..|+.+.|.|.+ .+.|+
T Consensus 658 ~eRRl~Vmpedd~f~Itnvk~eD~GiYtC~A~n~AG~isanAtL~V~e~p~f~~PL~~~~V~~get~vlqC~a-~~~~a~ 736 (873)
T KOG4194|consen 658 RERRLHVMPEDDVFFITNVKIEDQGIYTCTAQNVAGQISANATLTVLETPSFSIPLEDQLVVVGETLVLQCLA-EGAPAD 736 (873)
T ss_pred hhheeeecCCCCEEEEecccccccceeEEeeeccccceeeceEEEEecCCcccccccceEEEecceEEEEEec-CCCCCC
Confidence 2344433 45689999999999992 256788899999999998 67666
Q ss_pred CeEEEeEcCeEeccCCCceEEecCCCccccccccccccccccccccceeEEEEeeccccc
Q psy15128 229 PTLHWKKNGQFIDLESSKRVSILGDPWFDSRRSRSIFGSVLGALSDDQWKLIAKNIRNQQ 288 (292)
Q Consensus 229 ~~~~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~a~n~~g~~ 288 (292)
|.+.|+|+.++|...+.. .+.++. ..|.+.....+|+|.|+|...|..|..
T Consensus 737 pr~~W~k~d~pil~t~rh--~f~d~d-------Qllvv~~~~~~daG~yTcem~~~~~~~ 787 (873)
T KOG4194|consen 737 PRLEWFKEDKPILITERH--TFPDGD-------QLLVVKENLVEDAGIYTCEMSNTLGTE 787 (873)
T ss_pred ccccccCCCCceEEeecc--cCCCCC-------eEEEEEehhhhhcceEEEEEEeeccce
Confidence 999999999988533222 222221 246666777999999999999998864
No 10
>PHA02785 IL-beta-binding protein; Provisional
Probab=99.92 E-value=3.8e-23 Score=161.01 Aligned_cols=198 Identities=20% Similarity=0.345 Sum_probs=135.4
Q ss_pred cccCCcCCCeeEEEEEEecccccccccEEEEEeCC--CcEEeCCCccEEecCCcEEEEEE-----EeeeCCCeeEEEECC
Q psy15128 2 ITEVKKSDEGKYQCYVQNMVGERETKPALLTVHAP--PSFVVRPQDQKVGLNGIASFQCV-----AEGSPLPSVFWTQEG 74 (292)
Q Consensus 2 i~~v~~~D~G~Y~C~~~~~~~~~~~~~~~l~v~~~--p~~~~~~~~~~~~~g~~~~l~C~-----~~~~~~~~v~W~~~~ 74 (292)
|.++..+|+|.|+|.++|..+..... +.|.|... +.+...+.+..+.+|..+.|.|. ..+.|.+.+.|+++.
T Consensus 86 i~~~~~~DsG~Y~C~a~N~~g~~~~s-~~L~V~~~~~~~~~~~~~~~~~~~g~~~~i~C~~~~~~~~~~~~~~i~W~k~~ 164 (326)
T PHA02785 86 ILNPTQSDSGIYICITKNETYCDMMS-LNLTIVSVSESNIDLISYPQIVNERSTGEMVCPNINAFIASNVNADIIWSGHR 164 (326)
T ss_pred EcccCcccCeEEEEEEECCCcceEEE-EEEEEEecCCCccceeeccceecccCcEEEECCChhhcccCCCCceEEEccCC
Confidence 56788999999999999988776655 77777543 22322334455778999999996 235678899998754
Q ss_pred eEEeeccCCCcceeEEeeecEEEEccCCCCCCeEEEEEEEeCCcCeeEEE--EEEEEeecCCCCCeEEeCCCCceecCCC
Q psy15128 75 SQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRA--FLQVTSVEDTPPPIVQVGPSNQTLPLHS 152 (292)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~~~~~~~~--~l~v~~~~~~~~~~~~~~~~~~~~~~g~ 152 (292)
. + ...+.....++.|.|.+++.+|.|.|+|.+.+..+...... .+.+.+.....+|.+ ..|....+..|+
T Consensus 165 ~-~------~~~r~~~~~~~~L~i~~v~~~d~G~Y~C~~~n~~g~~~~~~t~~v~l~V~~~~~pp~~-~~p~~~~~~~G~ 236 (326)
T PHA02785 165 R-L------RNKRLKQRTPGIITIEDVRKNDAGYYTCVLKYIYGDKTYNVTRIVKLEVRDRIIPPTM-QLPEGVVTSIGS 236 (326)
T ss_pred c-c------CCcceEecCCCeEEEeecChhhCeEEEEEEEeccCCEEEeEEEEEEEEEeccCCCcee-cCCCcEEecCCC
Confidence 2 1 11233333456899999999999999999999877654332 222222222223333 345666778899
Q ss_pred eEEEEeEeccCCCC---ceEEEeCCeeCCCCC----ccEEEc-----------CCCcEEEEeeecCCCCCCcce
Q psy15128 153 VAFLPCQAVGSPPP---HIRWYKNGNSLPPED----TRINVS-----------SSGSLQIDVLRDDFRAEPKDT 208 (292)
Q Consensus 153 ~v~l~C~~~~~p~~---~~~W~~~~~~l~~~~----~~~~~~-----------~~~~l~i~~~~~~d~g~~~~~ 208 (292)
.++|.|.+.+.|.+ .+.|++||..+...+ .++... ..+.|.|.++..+|.|.|...
T Consensus 237 ~v~L~C~a~g~P~~~~~~v~W~kng~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~V~~~D~G~Y~C~ 310 (326)
T PHA02785 237 NLTIACRVSLRPPTTDADVFWISNGMYYEEDDEDGDGRISVANKIYTTDKRRVITSRLNINPVKEEDATTFTCM 310 (326)
T ss_pred cEEEEEEEECCCCCCCceEEEEECCEECCCcCCCCceeEEEecCccccccceeeeEEEEECCcchhcCeeeEEE
Confidence 99999999988764 799999999885422 121111 124689999999998866443
No 11
>PHA02826 IL-1 receptor-like protein; Provisional
Probab=99.84 E-value=1.8e-19 Score=132.04 Aligned_cols=150 Identities=19% Similarity=0.208 Sum_probs=106.5
Q ss_pred CccEEecCCcEEEEEEEeeeC-----------CCeeEEEECCeEEeecc-CCCc------ceeEEeeecEEEEccCCCCC
Q psy15128 44 QDQKVGLNGIASFQCVAEGSP-----------LPSVFWTQEGSQVLMFP-GNAY------GHLHVTQEGTLRIQGVQKED 105 (292)
Q Consensus 44 ~~~~~~~g~~~~l~C~~~~~~-----------~~~v~W~~~~~~~~~~~-~~~~------~~~~~~~~~~l~i~~~~~~d 105 (292)
....+.+|+++.|.|.+.+.+ .+++.|+|++....... +... ..........|.|.+++.+|
T Consensus 30 ~~~~v~eGe~v~L~C~~~~~~~~~~~~~~~~~~~~V~W~k~~s~~~v~~~~~~~~~~~i~~~~~~~r~~~L~I~~v~~~D 109 (227)
T PHA02826 30 TPVYAKFGDPMVLLCTGKHYKKSIFFDKTFITSYNVTWSKTDSLAFVRDSGARTKIKKITHNEIGDRSENLWIGNVINID 109 (227)
T ss_pred ceEEecCCCCEEEEccccccccccccccccCCCccEEEEeCCeEEEEEcCCCccccccccccceecCCCeEEECCCChHH
Confidence 456788999999999986643 34899999876432211 1100 01111235689999999999
Q ss_pred CeEEEEEEEeCCcCeeEEEEEEEEeecCCCCCeEEeCCCCceecCCCeEEEEeEecc-----CCCCceEEEeCCeeCCCC
Q psy15128 106 AGFFVCSALSVAGSTTVRAFLQVTSVEDTPPPIVQVGPSNQTLPLHSVAFLPCQAVG-----SPPPHIRWYKNGNSLPPE 180 (292)
Q Consensus 106 ~g~Y~C~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~g~~v~l~C~~~~-----~p~~~~~W~~~~~~l~~~ 180 (292)
+|.|+|.+.|..+.....+.|.|.. + +....+..|+.+.|.|.+.+ .|.|.+.|+|++.++...
T Consensus 110 sG~Y~C~a~N~~~~~~~~i~L~V~~-----~------~~~~~~~~G~~v~L~C~~~~~~~~~~p~p~I~WyKng~~l~~~ 178 (227)
T PHA02826 110 EGIYICTISSGNICEESTIRLTFDS-----G------TINYQFNSGKDSKLHCYGTDGISSTFKDYTLTWYKNGNIVLYT 178 (227)
T ss_pred CEEEEEEEEECCcceEEEEEEEEec-----C------CccceEecCCCEEEEeeCCCCccccCCCceEEEEECCEECCCC
Confidence 9999999999877766666665531 1 12334678999999999852 457899999999998754
Q ss_pred CccEEEcC-CCcEEEEeeecCCCCCC
Q psy15128 181 DTRINVSS-SGSLQIDVLRDDFRAEP 205 (292)
Q Consensus 181 ~~~~~~~~-~~~l~i~~~~~~d~g~~ 205 (292)
.++.... .+.|.|.++..+|+|.|
T Consensus 179 -~r~~~~~~~~~L~I~~V~~~DsG~Y 203 (227)
T PHA02826 179 -DRIQLRNNNSTLVIKSATHDDSGIY 203 (227)
T ss_pred -CCEEEeCCCCEEEECcCCHHhCEEE
Confidence 3444443 45799999999999954
No 12
>PHA02826 IL-1 receptor-like protein; Provisional
Probab=99.74 E-value=9.9e-17 Score=117.67 Aligned_cols=104 Identities=20% Similarity=0.328 Sum_probs=79.6
Q ss_pred cccCCcCCCeeEEEEEEecccccccccEEEEEeCCCcEEeCCCccEEecCCcEEEEEEEee-----eCCCeeEEEECCeE
Q psy15128 2 ITEVKKSDEGKYQCYVQNMVGERETKPALLTVHAPPSFVVRPQDQKVGLNGIASFQCVAEG-----SPLPSVFWTQEGSQ 76 (292)
Q Consensus 2 i~~v~~~D~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~-----~~~~~v~W~~~~~~ 76 (292)
|.+++.+|+|.|+|.+.|..+..... +.|.|..++ ....+.+|+.+.|.|.+.+ .|.|.++|+|++..
T Consensus 102 I~~v~~~DsG~Y~C~a~N~~~~~~~~-i~L~V~~~~------~~~~~~~G~~v~L~C~~~~~~~~~~p~p~I~WyKng~~ 174 (227)
T PHA02826 102 IGNVINIDEGIYICTISSGNICEEST-IRLTFDSGT------INYQFNSGKDSKLHCYGTDGISSTFKDYTLTWYKNGNI 174 (227)
T ss_pred ECCCChHHCEEEEEEEEECCcceEEE-EEEEEecCC------ccceEecCCCEEEEeeCCCCccccCCCceEEEEECCEE
Confidence 78999999999999999977665555 777775432 2446778999999998753 35789999999987
Q ss_pred EeeccCCCcceeEEe-eecEEEEccCCCCCCeEEEEEEEeCC
Q psy15128 77 VLMFPGNAYGHLHVT-QEGTLRIQGVQKEDAGFFVCSALSVA 117 (292)
Q Consensus 77 ~~~~~~~~~~~~~~~-~~~~l~i~~~~~~d~g~Y~C~~~~~~ 117 (292)
+... .+.... ..+.|.|.+++.+|+|.|+|.++...
T Consensus 175 l~~~-----~r~~~~~~~~~L~I~~V~~~DsG~YtC~a~~~~ 211 (227)
T PHA02826 175 VLYT-----DRIQLRNNNSTLVIKSATHDDSGIYTCNLRFNK 211 (227)
T ss_pred CCCC-----CCEEEeCCCCEEEECcCCHHhCEEEEEEEEEeE
Confidence 6311 123222 34589999999999999999998653
No 13
>cd05762 Ig8_MLCK Eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK). Ig8_MLCK: the eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK). MLCK is a key regulator of different forms of cell motility involving actin and myosin II. Agonist stimulation of smooth muscle cells increases cytosolic Ca2+, which binds calmodulin. This Ca2+-calmodulin complex in turn binds to and activates MLCK. Activated MLCK leads to the phosphorylation of the 20 kDa myosin regulatory light chain (RLC) of myosin II and the stimulation of actin-activated myosin MgATPase activity. MLCK is widely present in vertebrate tissues; it phosphorylates the 20 kDa RLC of both smooth and nonmuscle myosin II. Phosphorylation leads to the activation of the myosin motor domain and altered structural properties of myosin II. In smooth muscle MLCK it is involved in initiating contraction. In nonmuscle cells, MLCK may participate in cell division and cell motility; it has
Probab=99.72 E-value=3.1e-16 Score=100.08 Aligned_cols=93 Identities=20% Similarity=0.298 Sum_probs=75.2
Q ss_pred CcEEeCCCccEEecCCcEEEEEEEeeeCCCeeEEEECCeEEeeccCCCcceeEEeeecEEEEccCCCCCCeEEEEEEEeC
Q psy15128 37 PSFVVRPQDQKVGLNGIASFQCVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSV 116 (292)
Q Consensus 37 p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~ 116 (292)
|.+...+....+..|+.+.|.|.+.|.|.+.+.|+|++..+. .+...........+.|.|.++..+|+|.|+|.+.|.
T Consensus 1 p~~~~~p~~~~v~~G~~v~l~C~~~G~p~p~v~W~kdg~~l~--~~~~~~~~~~~~~s~L~I~~~~~~D~G~Ytc~a~N~ 78 (98)
T cd05762 1 PQIIQFPEDMKVRAGESVELFCKVTGTQPITCTWMKFRKQIQ--EGEGIKIENTENSSKLTITEGQQEHCGCYTLEVENK 78 (98)
T ss_pred CceEECCcCEEEECCCEEEEEEEEcccCCCceEEEECCEEec--CCCcEEEEecCCeeEEEECCCChhhCEEEEEEEEcC
Confidence 456677788899999999999999999999999999998774 121211112223568999999999999999999999
Q ss_pred CcCeeEEEEEEEEee
Q psy15128 117 AGSTTVRAFLQVTSV 131 (292)
Q Consensus 117 ~~~~~~~~~l~v~~~ 131 (292)
.|.....+.|.|.+.
T Consensus 79 ~G~~~~~~~l~V~~~ 93 (98)
T cd05762 79 LGSRQAQVNLTVVDK 93 (98)
T ss_pred CCceeEEEEEEEecC
Confidence 999999888888753
No 14
>cd05851 Ig3_Contactin-1 Third Ig domain of contactin-1. Ig3_Contactin-1: Third Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.
Probab=99.69 E-value=5.4e-16 Score=97.08 Aligned_cols=87 Identities=23% Similarity=0.401 Sum_probs=71.4
Q ss_pred CCcEEeCCCccEEecCCcEEEEEEEeeeCCCeeEEEECCeEEeeccCCCcceeEEeeecEEEEccCCCCCCeEEEEEEEe
Q psy15128 36 PPSFVVRPQDQKVGLNGIASFQCVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALS 115 (292)
Q Consensus 36 ~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~ 115 (292)
+|.+...+.+..+.+|+.+.|.|.+.|.|.|.+.|+|++..+.. ..+. ...++.|.|.+++.+|+|.|+|.|.|
T Consensus 1 ~p~i~~~~~~~~~~~G~~v~l~C~~~G~P~P~v~W~k~~~~~~~-----~~~~-~~~~~~L~I~~v~~~D~G~Y~C~A~N 74 (88)
T cd05851 1 PADINVKFKDTYALKGQNVTLECFALGNPVPVIRWRKILEPMPA-----TAEI-SMSGAVLKIFNIQPEDEGTYECEAEN 74 (88)
T ss_pred CCceEEccccEEEeCCCcEEEEEEecccCCCEEEEEECCcCCCC-----CCEE-ecCCCEEEECcCChhhCEEEEEEEEc
Confidence 47778888889999999999999999999999999999865421 1112 12345899999999999999999999
Q ss_pred CCcCeeEEEEEEE
Q psy15128 116 VAGSTTVRAFLQV 128 (292)
Q Consensus 116 ~~~~~~~~~~l~v 128 (292)
..|.....+.|.|
T Consensus 75 ~~G~~~~~~~l~V 87 (88)
T cd05851 75 IKGKDKHQARVYV 87 (88)
T ss_pred CCCceEEEEEEEE
Confidence 9998887777665
No 15
>cd04975 Ig4_SCFR_like Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR) and similar proteins. Ig4_SCFR_like; fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR). In addition to SCFR this group also includes the fourth Ig domain of platelet-derived growth factor receptors (PDGFR), alpha and beta, the fourth Ig domain of macrophage colony stimulating factor (M-CSF), and the Ig domain of the receptor tyrosine kinase KIT. SCFR and the PDGFR alpha and beta have similar organization: an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR, this fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth SCFR_Ig-like domain abolishes
Probab=99.68 E-value=8.9e-17 Score=102.60 Aligned_cols=83 Identities=13% Similarity=0.167 Sum_probs=62.8
Q ss_pred cceEEeCCCceEEEeeCCCC-CCCCeEEEeEcCeEeccCCCceEEecCCCccccccccccccccccccccceeEEEEeec
Q psy15128 206 KDTRVASGETALLECGPPKG-QPEPTLHWKKNGQFIDLESSKRVSILGDPWFDSRRSRSIFGSVLGALSDDQWKLIAKNI 284 (292)
Q Consensus 206 ~~~~~~~g~~~~l~C~~~~~-~p~~~~~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~a~n~ 284 (292)
....+.+|+++.|.|.+ .| .|+|.+.|+|+|.+|... ...+....+.. .......|.|..+..+|+|.|+|.|+|.
T Consensus 11 ~~~~v~~G~~v~L~c~v-~g~~P~p~v~W~Kdg~~i~~~-~~~~~~~~~~~-~~~~~~~L~i~~v~~~D~G~Ytc~A~N~ 87 (101)
T cd04975 11 TTIFVNLGENLNLVVEV-EAYPPPPHINWTYDNRTLTNK-LTEIVTSENES-EYRYVSELKLVRLKESEAGTYTFLASNS 87 (101)
T ss_pred ceEEEECCCCEEEEEEE-EecCCCCccEEEeCCeeCCCC-cceeEEEeccC-cceEEEEEEEeecCHhhCeeEEEEEECC
Confidence 57789999999999998 78 899999999999999632 22222222100 0012246999999999999999999999
Q ss_pred ccccccC
Q psy15128 285 RNQQQHG 291 (292)
Q Consensus 285 ~g~~~~~ 291 (292)
.|+++.+
T Consensus 88 ~G~~~~t 94 (101)
T cd04975 88 DASKSLT 94 (101)
T ss_pred CccEEEE
Confidence 9987753
No 16
>cd05771 IgC_Tapasin_R Tapasin-R immunoglobulin-like domain. IgC_Tapasin_R: Immunoglobulin-like domain on Tapasin-R. Tapasin is a V-C1 (variable-constant) immunoglobulin superfamily molecule present in the endoplasmic reticulum (ER), where it links MHC class I molecules to the transporter associated with antigen processing (TAP). Tapasin-R is a tapasin-related protein that contains similar structural motifs to Tapasin, with some marked differences, especially in the V domain, transmembrane and cytoplasmic regions. The majority of Tapasin-R is located within the ER; however, there may be some expression of Tapasin-R at the cell surface. Tapasin-R lacks an obvious ER retention signal.
Probab=99.67 E-value=2e-15 Score=103.50 Aligned_cols=117 Identities=18% Similarity=0.269 Sum_probs=85.4
Q ss_pred cccCCcCCCeeEEEEEEecccccccccEEEEEeCCCcEEeCCCccEEecCCcEEEEEEEeee-CC-CeeEEEECCeEEee
Q psy15128 2 ITEVKKSDEGKYQCYVQNMVGERETKPALLTVHAPPSFVVRPQDQKVGLNGIASFQCVAEGS-PL-PSVFWTQEGSQVLM 79 (292)
Q Consensus 2 i~~v~~~D~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~-~~-~~v~W~~~~~~~~~ 79 (292)
|.+++.+|+|.|+|.+.+..+..... +.|.|..+|.+...+.......|+.++|.|.+.+. |. ..|.|++++.....
T Consensus 5 i~~v~~~D~G~Y~C~~~~~~~~~~~~-~~l~v~~~P~v~~~~~~~~~~~~~~~~L~C~a~g~~P~~~~i~W~~~g~~~~~ 83 (139)
T cd05771 5 LPGLTVHDEGTYICSVSTPPHQAQQI-IQLSVSEPPRVRLSLEKLVSMIEEPQTLICHIAGYYPLDVQVEWTREPPGDSP 83 (139)
T ss_pred ECCCCHHHCEEEEEEEEccCcceeeE-EEEEEecCCceEEeCCCceeecCCcEEEEEEECCCCCCCeEEEEEECCCCCcc
Confidence 78999999999999999877776555 89999999998877766666678999999999985 54 48999998754211
Q ss_pred ----ccCC------CcceeEEeeecEEEEccCCCCCCeEEEEEEEeCCcC
Q psy15128 80 ----FPGN------AYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGS 119 (292)
Q Consensus 80 ----~~~~------~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~~~ 119 (292)
..+. ......+...+.|.+.....++.+.|+|.+.+....
T Consensus 84 ~~~~~~~~~~~~~~~~~dgt~~~~s~L~v~~~~~~~g~~ytC~V~H~~l~ 133 (139)
T cd05771 84 PPVSLSNVSFSSHRQHQDGTYSLSSHLTLEPGTEDAGATYTCRVSHVSLE 133 (139)
T ss_pred ceeccCCeEecceEeCCCCCEEEEEEEEecCCccCCCCEEEEEEEcCCCC
Confidence 0000 011123334457888777777778999999876543
No 17
>cd05851 Ig3_Contactin-1 Third Ig domain of contactin-1. Ig3_Contactin-1: Third Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.
Probab=99.67 E-value=2.4e-16 Score=98.68 Aligned_cols=75 Identities=23% Similarity=0.376 Sum_probs=60.7
Q ss_pred CcceEEeCCCceEEEeeCCCCCCCCeEEEeEcCeEeccCCCceEEecCCCccccccccccccccccccccceeEEEEeec
Q psy15128 205 PKDTRVASGETALLECGPPKGQPEPTLHWKKNGQFIDLESSKRVSILGDPWFDSRRSRSIFGSVLGALSDDQWKLIAKNI 284 (292)
Q Consensus 205 ~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~a~n~ 284 (292)
+.+..+.+|+.+.|.|.+ .|.|.|.+.|++++.++. ...++... ...|.|..+..+|+|.|+|.|.|.
T Consensus 8 ~~~~~~~~G~~v~l~C~~-~G~P~P~v~W~k~~~~~~--~~~~~~~~---------~~~L~I~~v~~~D~G~Y~C~A~N~ 75 (88)
T cd05851 8 FKDTYALKGQNVTLECFA-LGNPVPVIRWRKILEPMP--ATAEISMS---------GAVLKIFNIQPEDEGTYECEAENI 75 (88)
T ss_pred cccEEEeCCCcEEEEEEe-cccCCCEEEEEECCcCCC--CCCEEecC---------CCEEEECcCChhhCEEEEEEEEcC
Confidence 356778899999999998 899999999999998774 22233221 125889999999999999999999
Q ss_pred ccccccC
Q psy15128 285 RNQQQHG 291 (292)
Q Consensus 285 ~g~~~~~ 291 (292)
+|.++++
T Consensus 76 ~G~~~~~ 82 (88)
T cd05851 76 KGKDKHQ 82 (88)
T ss_pred CCceEEE
Confidence 9998653
No 18
>cd05737 Ig_Myomesin_like_C C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein. Ig_Myomesin_like_C: domain similar to the C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein. Myomesin and M-protein are both structural proteins localized to the M-band, a transverse structure in the center of the sarcomere, and are candidates for M-band bridges. Both proteins are modular, consisting mainly of repetitive Ig-like and fibronectin type III (FnIII) domains. Myomesin is expressed in all types of vertebrate striated muscle; M-protein has a muscle-type specific expression pattern. Myomesin is present in both slow and fast fibers; M-protein is present only in fast fibers. It has been suggested that myomesin acts as a molecular spring with alternative splicing as a means of modifying its elasticity.
Probab=99.66 E-value=3.5e-16 Score=99.08 Aligned_cols=80 Identities=21% Similarity=0.353 Sum_probs=63.3
Q ss_pred CCcceEEeCCCceEEEeeCCCCCCCCeEEEeEcCeEeccCCCceEEecCCCccccccccccccccccccccceeEEEEee
Q psy15128 204 EPKDTRVASGETALLECGPPKGQPEPTLHWKKNGQFIDLESSKRVSILGDPWFDSRRSRSIFGSVLGALSDDQWKLIAKN 283 (292)
Q Consensus 204 ~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~a~n 283 (292)
.|....+.+|+.+.|.|.+ .|.|.|.+.|+++|+++......++..... ....|.|..+..+|+|.|+|.|+|
T Consensus 7 lp~~v~v~~G~~v~L~C~v-~G~P~p~v~W~k~g~~l~~~~~~~~~~~~~------~~~~L~I~~v~~~D~G~Y~C~a~N 79 (92)
T cd05737 7 LPDVVTIMEGKTLNLTCTV-FGDPDPEVSWLKNDQALALSDHYNVKVEQG------KYASLTIKGVSSEDSGKYGIVVKN 79 (92)
T ss_pred CCceEEEeCCCcEEEEEEE-EecCCCeEEEEECCEECccCCCEEEEEcCC------CEEEEEEccCChhhCEEEEEEEEE
Confidence 3556789999999999998 899999999999999886333323322211 112588999999999999999999
Q ss_pred ccccccc
Q psy15128 284 IRNQQQH 290 (292)
Q Consensus 284 ~~g~~~~ 290 (292)
..|+++.
T Consensus 80 ~~G~~~~ 86 (92)
T cd05737 80 KYGGETV 86 (92)
T ss_pred CCCcceE
Confidence 9998864
No 19
>cd05852 Ig5_Contactin-1 Fifth Ig domain of contactin-1. Ig5_Contactin-1: fifth Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.
Probab=99.66 E-value=2.6e-16 Score=94.49 Aligned_cols=68 Identities=26% Similarity=0.534 Sum_probs=56.8
Q ss_pred CCceEEEeeCCCCCCCCeEEEeEcCeEeccCCCceEEecCCCccccccccccccccccccccceeEEEEeecccccccC
Q psy15128 213 GETALLECGPPKGQPEPTLHWKKNGQFIDLESSKRVSILGDPWFDSRRSRSIFGSVLGALSDDQWKLIAKNIRNQQQHG 291 (292)
Q Consensus 213 g~~~~l~C~~~~~~p~~~~~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~a~n~~g~~~~~ 291 (292)
|+.+.|.|.+ .|.|.|.+.|+|++..+. .+.++.+..++ .|.|..+..+|+|.|+|.|+|..|+++.+
T Consensus 1 G~~~~l~C~~-~g~P~p~v~W~k~~~~l~--~~~r~~~~~~g--------~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~ 68 (73)
T cd05852 1 GGRVIIECKP-KAAPKPKFSWSKGTELLV--NNSRISIWDDG--------SLEILNITKLDEGSYTCFAENNRGKANST 68 (73)
T ss_pred CCeEEEEEec-ceeCCCEEEEEeCCEecc--cCCCEEEcCCC--------EEEECcCChhHCEEEEEEEECCCCceeEE
Confidence 6889999998 899999999999998774 34455554432 58899999999999999999999998753
No 20
>cd05762 Ig8_MLCK Eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK). Ig8_MLCK: the eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK). MLCK is a key regulator of different forms of cell motility involving actin and myosin II. Agonist stimulation of smooth muscle cells increases cytosolic Ca2+, which binds calmodulin. This Ca2+-calmodulin complex in turn binds to and activates MLCK. Activated MLCK leads to the phosphorylation of the 20 kDa myosin regulatory light chain (RLC) of myosin II and the stimulation of actin-activated myosin MgATPase activity. MLCK is widely present in vertebrate tissues; it phosphorylates the 20 kDa RLC of both smooth and nonmuscle myosin II. Phosphorylation leads to the activation of the myosin motor domain and altered structural properties of myosin II. In smooth muscle MLCK it is involved in initiating contraction. In nonmuscle cells, MLCK may participate in cell division and cell motility; it has
Probab=99.66 E-value=4.8e-16 Score=99.19 Aligned_cols=78 Identities=22% Similarity=0.230 Sum_probs=63.7
Q ss_pred CcceEEeCCCceEEEeeCCCCCCCCeEEEeEcCeEeccCCCceEEecCCCccccccccccccccccccccceeEEEEeec
Q psy15128 205 PKDTRVASGETALLECGPPKGQPEPTLHWKKNGQFIDLESSKRVSILGDPWFDSRRSRSIFGSVLGALSDDQWKLIAKNI 284 (292)
Q Consensus 205 ~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~a~n~ 284 (292)
+....+..|+.+.|.|.+ .|.|++.+.|+|+|++|.. +.++.+.... ....|.|..+..+|+|.|+|.|.|.
T Consensus 7 p~~~~v~~G~~v~l~C~~-~G~p~p~v~W~kdg~~l~~--~~~~~~~~~~-----~~s~L~I~~~~~~D~G~Ytc~a~N~ 78 (98)
T cd05762 7 PEDMKVRAGESVELFCKV-TGTQPITCTWMKFRKQIQE--GEGIKIENTE-----NSSKLTITEGQQEHCGCYTLEVENK 78 (98)
T ss_pred CcCEEEECCCEEEEEEEE-cccCCCceEEEECCEEecC--CCcEEEEecC-----CeeEEEECCCChhhCEEEEEEEEcC
Confidence 456789999999999998 8999999999999999963 3344433221 2236899999999999999999999
Q ss_pred cccccc
Q psy15128 285 RNQQQH 290 (292)
Q Consensus 285 ~g~~~~ 290 (292)
+|++..
T Consensus 79 ~G~~~~ 84 (98)
T cd05762 79 LGSRQA 84 (98)
T ss_pred CCceeE
Confidence 999865
No 21
>cd05894 Ig_C5_MyBP-C C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C). Ig_C5_MyBP_C : the C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C). MyBP_C consists of repeated domains, Ig and fibronectin type 3, and various linkers. Three isoforms of MYBP_C exist and are included in this group: cardiac(c), and fast and slow skeletal muscle (s) MyBP_C. cMYBP_C has insertions between and inside domains and an additional cardiac-specific Ig domain at the N-terminus. For cMYBP_C an interaction has been demonstrated between this C5 domain and the Ig C8 domain.
Probab=99.65 E-value=5.3e-16 Score=96.51 Aligned_cols=77 Identities=16% Similarity=0.236 Sum_probs=62.5
Q ss_pred ceEEeCCCceEEEeeCCCCCCCCeEEEeEcCeEeccCCCceEEecCCCccccccccccccccccccccceeEEEEeeccc
Q psy15128 207 DTRVASGETALLECGPPKGQPEPTLHWKKNGQFIDLESSKRVSILGDPWFDSRRSRSIFGSVLGALSDDQWKLIAKNIRN 286 (292)
Q Consensus 207 ~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~a~n~~g 286 (292)
.+.+.+|+.+.|.|.+ .|.|.|.+.|+++++++... ..++.+.... ....|.|..+..+|+|.|+|.|.|..|
T Consensus 4 ~~~v~~G~~v~l~c~~-~G~P~P~v~W~k~~~~i~~~-~~r~~~~~~~-----~~~~L~I~~~~~~D~G~Y~c~a~N~~G 76 (86)
T cd05894 4 TIVVVAGNKLRLDVPI-SGEPAPTVTWSRGDKAFTET-EGRVRVESYK-----DLSSFVIEGAEREDEGVYTITVTNPVG 76 (86)
T ss_pred EEEEEcCCEEEEEeeE-eecCCCeEEEEECCEECccC-CCeEEEEEcC-----CeEEEEECCCccCcCEEEEEEEEeCCC
Confidence 5678999999999998 89999999999999998532 2344433221 123699999999999999999999999
Q ss_pred cccc
Q psy15128 287 QQQH 290 (292)
Q Consensus 287 ~~~~ 290 (292)
+++.
T Consensus 77 ~~~~ 80 (86)
T cd05894 77 EDHA 80 (86)
T ss_pred cEEE
Confidence 9864
No 22
>cd05745 Ig3_Peroxidasin Third immunoglobulin (Ig)-like domain of peroxidasin. Ig3_Peroxidasin: the third immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells which have undergone programmed cell death, and protection of the organism against non-self.
Probab=99.65 E-value=3.6e-16 Score=94.76 Aligned_cols=69 Identities=25% Similarity=0.438 Sum_probs=56.3
Q ss_pred CCCceEEEeeCCCCCCCCeEEEeEcCeEeccCCCceEEecCCCccccccccccccccccccccceeEEEEeecccccccC
Q psy15128 212 SGETALLECGPPKGQPEPTLHWKKNGQFIDLESSKRVSILGDPWFDSRRSRSIFGSVLGALSDDQWKLIAKNIRNQQQHG 291 (292)
Q Consensus 212 ~g~~~~l~C~~~~~~p~~~~~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~a~n~~g~~~~~ 291 (292)
+|+.+.|.|.+ .|.|.|.+.|+++|.++.. ..+.....+ ..|.|..+..+|+|.|+|.|.|..|+.+.+
T Consensus 1 eG~~v~l~C~~-~g~P~p~i~W~k~g~~~~~--~~~~~~~~~--------~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~ 69 (74)
T cd05745 1 EGQTVDFLCEA-QGYPQPVIAWTKGGSQLSV--DRRHLVLSS--------GTLRISRVALHDQGQYECQAVNIVGSQRTV 69 (74)
T ss_pred CCCeEEEEeEC-CEecCCEEEEEECCEECCC--CCCeEEccC--------CeEEEeeCCHHhCEEEEEEEEeCCCceeEE
Confidence 58999999998 8999999999999998852 223322222 268899999999999999999999998653
No 23
>cd05745 Ig3_Peroxidasin Third immunoglobulin (Ig)-like domain of peroxidasin. Ig3_Peroxidasin: the third immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells which have undergone programmed cell death, and protection of the organism against non-self.
Probab=99.64 E-value=2.4e-15 Score=91.15 Aligned_cols=73 Identities=36% Similarity=0.567 Sum_probs=60.1
Q ss_pred cCCcEEEEEEEeeeCCCeeEEEECCeEEeeccCCCcceeEEeeecEEEEccCCCCCCeEEEEEEEeCCcCeeEEEEEE
Q psy15128 50 LNGIASFQCVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQ 127 (292)
Q Consensus 50 ~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~~~~~~~~~l~ 127 (292)
+|+.+.|.|.+.|.|.|.+.|+|++..+.. ..+......+.|.|.+++.+|+|.|+|.+.|..|.....+.|.
T Consensus 1 eG~~v~l~C~~~g~P~p~i~W~k~g~~~~~-----~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~~L~ 73 (74)
T cd05745 1 EGQTVDFLCEAQGYPQPVIAWTKGGSQLSV-----DRRHLVLSSGTLRISRVALHDQGQYECQAVNIVGSQRTVAQLT 73 (74)
T ss_pred CCCeEEEEeECCEecCCEEEEEECCEECCC-----CCCeEEccCCeEEEeeCCHHhCEEEEEEEEeCCCceeEEEEEe
Confidence 588999999999999999999999886531 1122334466899999999999999999999999887776664
No 24
>cd05859 Ig4_PDGFR-alpha Fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha. IG4_PDGFR-alpha: The fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha. PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFR alpha binds to all three PDGFs, whereas the PDGFR beta (not included in this group) binds only to PDGF-B. PDGF alpha is organized as an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFR alpha and PDGFR beta are essential for normal development.
Probab=99.64 E-value=5.6e-16 Score=99.12 Aligned_cols=83 Identities=10% Similarity=0.050 Sum_probs=62.6
Q ss_pred ceEEeCCCceEEEeeCCCCCCCCeEEEeEcCeEeccCCCceEEecCCCccccccccccccccccccccceeEEEEeeccc
Q psy15128 207 DTRVASGETALLECGPPKGQPEPTLHWKKNGQFIDLESSKRVSILGDPWFDSRRSRSIFGSVLGALSDDQWKLIAKNIRN 286 (292)
Q Consensus 207 ~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~a~n~~g 286 (292)
...+..|+.+.|.|.+ .|+|+|.+.|+|+|++|..+. ..+...............|.|..+..+|+|.|+|.|+|..|
T Consensus 12 ~~~~~~~~~~~l~~~v-~g~P~P~v~W~kdg~~l~~~~-~~~~~~~~~~~~~~~~s~L~I~~v~~~D~G~Ytc~A~N~~g 89 (101)
T cd05859 12 LEFANLHEVKEFVVEV-EAYPPPQIRWLKDNRTLIENL-TEITTSEHNVQETRYVSKLKLIRAKEEDSGLYTALAQNEDA 89 (101)
T ss_pred eEEEecCCcEEEEEEE-EEeCCCceEEEECCEECcCCc-ceEEeccccccceeeccEEEEeeCCHHHCEEEEEEEEcCCc
Confidence 5678899999999998 999999999999999986322 12222111111112224699999999999999999999999
Q ss_pred ccccC
Q psy15128 287 QQQHG 291 (292)
Q Consensus 287 ~~~~~ 291 (292)
.++.+
T Consensus 90 ~~~~t 94 (101)
T cd05859 90 VKSYT 94 (101)
T ss_pred eEEEE
Confidence 98653
No 25
>cd05852 Ig5_Contactin-1 Fifth Ig domain of contactin-1. Ig5_Contactin-1: fifth Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.
Probab=99.64 E-value=3.6e-15 Score=89.48 Aligned_cols=73 Identities=22% Similarity=0.479 Sum_probs=60.5
Q ss_pred CCcEEEEEEEeeeCCCeeEEEECCeEEeeccCCCcceeEEeeecEEEEccCCCCCCeEEEEEEEeCCcCeeEEEEEEE
Q psy15128 51 NGIASFQCVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQV 128 (292)
Q Consensus 51 g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~~~~~~~~~l~v 128 (292)
|+.+.|.|.+.|.|.|.+.|+|++..+. . ..+.....++.|.|.+++.+|.|.|+|.|.|..|.....+.|.|
T Consensus 1 G~~~~l~C~~~g~P~p~v~W~k~~~~l~--~---~~r~~~~~~g~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~~ 73 (73)
T cd05852 1 GGRVIIECKPKAAPKPKFSWSKGTELLV--N---NSRISIWDDGSLEILNITKLDEGSYTCFAENNRGKANSTGVLSV 73 (73)
T ss_pred CCeEEEEEecceeCCCEEEEEeCCEecc--c---CCCEEEcCCCEEEECcCChhHCEEEEEEEECCCCceeEEEEEEC
Confidence 6789999999999999999999987552 1 22444455678999999999999999999999998888777653
No 26
>cd04968 Ig3_Contactin_like Third Ig domain of contactin. Ig3_Contactin_like: Third Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week
Probab=99.63 E-value=1.5e-14 Score=90.94 Aligned_cols=87 Identities=25% Similarity=0.460 Sum_probs=69.8
Q ss_pred CCcEEeCCCccEEecCCcEEEEEEEeeeCCCeeEEEECCeEEeeccCCCcceeEEeeecEEEEccCCCCCCeEEEEEEEe
Q psy15128 36 PPSFVVRPQDQKVGLNGIASFQCVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALS 115 (292)
Q Consensus 36 ~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~ 115 (292)
|+.+...+....+.+|+.+.|.|.+.|.|.|.+.|++++..+... ... ....+.|.|.+++.+|+|.|+|.+.|
T Consensus 1 p~~~~~~p~~~~~~~g~~v~l~C~~~g~P~p~v~W~k~~~~~~~~-----~~~-~~~~~~L~i~~v~~~D~G~Y~C~a~N 74 (88)
T cd04968 1 PSIIVVFPKDTYALKGQNVTLECFALGNPVPQIKWRKVDGSMPSS-----AEI-SMSGAVLKIPNIQFEDEGTYECEAEN 74 (88)
T ss_pred CCcEEECCCceEEeCCCcEEEEEEeeEeCCCEEEEEECCCcCCCc-----cEE-EEeCCEEEECCCCcccCEEEEEEEEE
Confidence 345566777888999999999999999999999999987654211 111 23467899999999999999999999
Q ss_pred CCcCeeEEEEEEE
Q psy15128 116 VAGSTTVRAFLQV 128 (292)
Q Consensus 116 ~~~~~~~~~~l~v 128 (292)
..|.....+.|.|
T Consensus 75 ~~G~~~~~~~l~V 87 (88)
T cd04968 75 IKGKDTHQGRIYV 87 (88)
T ss_pred CCCcEEEEEEEEE
Confidence 9998877777765
No 27
>cd05868 Ig4_NrCAM Fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule). Ig4_ NrCAM: fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six IG-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. NrCAM is primarily expressed in the nervous system.
Probab=99.63 E-value=8.9e-16 Score=93.29 Aligned_cols=70 Identities=23% Similarity=0.365 Sum_probs=55.0
Q ss_pred CCceEEEeeCCCCCCCCeEEEeEcCeEeccCCCceEEecCCCccccccccccccccccccccceeEEEEeecccccccC
Q psy15128 213 GETALLECGPPKGQPEPTLHWKKNGQFIDLESSKRVSILGDPWFDSRRSRSIFGSVLGALSDDQWKLIAKNIRNQQQHG 291 (292)
Q Consensus 213 g~~~~l~C~~~~~~p~~~~~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~a~n~~g~~~~~ 291 (292)
|+.+.|.|.+ .|.|.|.|.|+++|+++............+ ..|.|..+...|+|.|+|.|+|.+|....+
T Consensus 1 g~~~~l~C~a-~G~P~P~i~W~k~g~~i~~~~~~~~~~~~~--------~~l~i~~v~~~D~G~Y~C~A~N~~G~~~~~ 70 (76)
T cd05868 1 GEDGTLICRA-NGNPKPSISWLTNGVPIEIAPTDPSRKVDG--------DTIIFSKVQERSSAVYQCNASNEYGYLLAN 70 (76)
T ss_pred CCCEEEEEEe-eEeCCCeEEEEECCEEccccCCCceEEecC--------CEEEECCCCHhhCEEEEEEEEcCCCEEEEE
Confidence 6889999999 899999999999999985332222211111 257788899999999999999999998754
No 28
>cd05728 Ig4_Contactin-2-like Fourth Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins. Ig4_Contactin-2-like: fourth Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.
Probab=99.63 E-value=1.3e-15 Score=94.92 Aligned_cols=75 Identities=24% Similarity=0.406 Sum_probs=62.1
Q ss_pred CcceEEeCCCceEEEeeCCCCCCCCeEEEeEcCeEeccCCCceEEecCCCccccccccccccccccccccceeEEEEeec
Q psy15128 205 PKDTRVASGETALLECGPPKGQPEPTLHWKKNGQFIDLESSKRVSILGDPWFDSRRSRSIFGSVLGALSDDQWKLIAKNI 284 (292)
Q Consensus 205 ~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~a~n~ 284 (292)
|.+..+..|+.+.|.|.+ .|.|.|.+.|+++|.++. ...++..... .|.|..+..+|+|.|+|.|.|.
T Consensus 6 p~~~~~~~G~~~~l~C~~-~g~p~p~v~W~k~g~~~~--~~~~~~~~~~---------~L~i~~~~~~D~G~Y~C~a~N~ 73 (85)
T cd05728 6 ISDTEADIGSSLRWECKA-SGNPRPAYRWLKNGQPLA--SENRIEVEAG---------DLRITKLSLSDSGMYQCVAENK 73 (85)
T ss_pred CCccEEcCCCcEEEEEEe-eEeCCCEEEEEECCEECC--CCCeEEEeCC---------EEEEeeCCHHHCEEEEEEEECC
Confidence 456788999999999998 899999999999999885 3334443322 5888899999999999999999
Q ss_pred ccccccC
Q psy15128 285 RNQQQHG 291 (292)
Q Consensus 285 ~g~~~~~ 291 (292)
.|....+
T Consensus 74 ~G~~~~~ 80 (85)
T cd05728 74 HGTIYAS 80 (85)
T ss_pred CCeEEEE
Confidence 9987653
No 29
>cd05747 Ig5_Titin_like M5, fifth immunoglobulin (Ig)-like domain of human titin C terminus and similar proteins. Ig5_Titin_like: domain similar to the M5, fifth immunoglobulin (Ig)-like domain from the human titin C terminus. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic; depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone, and appears to function similar to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching.
Probab=99.62 E-value=1.1e-14 Score=92.34 Aligned_cols=89 Identities=24% Similarity=0.445 Sum_probs=69.4
Q ss_pred CCcEEeCCCccEEecCCcEEEEEEEeeeCCCeeEEEECCeEEeeccCCCcceeEEeeecEEEEccCCCCCCeEEEEEEEe
Q psy15128 36 PPSFVVRPQDQKVGLNGIASFQCVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALS 115 (292)
Q Consensus 36 ~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~ 115 (292)
+|.+...|....+.+|+.+.|.|.+.+.|.+.+.|++++..+. .............+.|.|.++..+|+|.|+|.+.|
T Consensus 3 ~~~~~~~p~~~~~~~G~~~~L~C~~~g~P~p~v~W~k~g~~l~--~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~N 80 (92)
T cd05747 3 PATILTKPRSLTVSEGESARFSCDVDGEPAPTVTWMREGQIIV--SSQRHQITSTEYKSTFEISKVQMSDEGNYTVVVEN 80 (92)
T ss_pred CCcccccCccEEEeCCCcEEEEEEEeecCCCEEEEEECCEECC--CCCcEEEEEcCCeeEEEECCCCcccCEeEEEEEEc
Confidence 6777778888999999999999999999999999999987653 11111111112245899999999999999999999
Q ss_pred CCcCeeEEEEE
Q psy15128 116 VAGSTTVRAFL 126 (292)
Q Consensus 116 ~~~~~~~~~~l 126 (292)
..|.......|
T Consensus 81 ~~G~~~~~~~l 91 (92)
T cd05747 81 SEGKQEAQFTL 91 (92)
T ss_pred CCCCEeEEEEe
Confidence 99877665544
No 30
>cd05894 Ig_C5_MyBP-C C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C). Ig_C5_MyBP_C : the C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C). MyBP_C consists of repeated domains, Ig and fibronectin type 3, and various linkers. Three isoforms of MYBP_C exist and are included in this group: cardiac(c), and fast and slow skeletal muscle (s) MyBP_C. cMYBP_C has insertions between and inside domains and an additional cardiac-specific Ig domain at the N-terminus. For cMYBP_C an interaction has been demonstrated between this C5 domain and the Ig C8 domain.
Probab=99.62 E-value=9.4e-15 Score=90.88 Aligned_cols=82 Identities=16% Similarity=0.285 Sum_probs=63.5
Q ss_pred ccEEecCCcEEEEEEEeeeCCCeeEEEECCeEEeeccCCCcceeEEeeecEEEEccCCCCCCeEEEEEEEeCCcCeeEEE
Q psy15128 45 DQKVGLNGIASFQCVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRA 124 (292)
Q Consensus 45 ~~~~~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~~~~~~~~ 124 (292)
.+.+.+|+.+.|.|.+.|.|.|.+.|++++..+.... ...........+.|.|.++..+|+|.|+|.+.|..|.....+
T Consensus 4 ~~~v~~G~~v~l~c~~~G~P~P~v~W~k~~~~i~~~~-~r~~~~~~~~~~~L~I~~~~~~D~G~Y~c~a~N~~G~~~~~~ 82 (86)
T cd05894 4 TIVVVAGNKLRLDVPISGEPAPTVTWSRGDKAFTETE-GRVRVESYKDLSSFVIEGAEREDEGVYTITVTNPVGEDHASL 82 (86)
T ss_pred EEEEEcCCEEEEEeeEeecCCCeEEEEECCEECccCC-CeEEEEEcCCeEEEEECCCccCcCEEEEEEEEeCCCcEEEEE
Confidence 4567889999999999999999999999998764221 111111112245899999999999999999999999877766
Q ss_pred EEE
Q psy15128 125 FLQ 127 (292)
Q Consensus 125 ~l~ 127 (292)
.|.
T Consensus 83 ~l~ 85 (86)
T cd05894 83 FVK 85 (86)
T ss_pred EEE
Confidence 654
No 31
>cd05892 Ig_Myotilin_C C-terminal immunoglobulin (Ig)-like domain of myotilin. Ig_Myotilin_C: C-terminal immunoglobulin (Ig)-like domain of myotilin. Mytolin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to the latter family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Myotilin is most abundant in skeletal and cardiac muscle, and is involved in maintaining sarcomere integrity. It binds to alpha-actinin, filamin and actin. Mutations in myotilin lead to muscle disorders.
Probab=99.62 E-value=1e-15 Score=92.16 Aligned_cols=69 Identities=19% Similarity=0.354 Sum_probs=54.2
Q ss_pred eEEEeeCCCCCCCCeEEEeEcCeEeccCCCceEEecCCCccccccccccccccccccccceeEEEEeeccccccc
Q psy15128 216 ALLECGPPKGQPEPTLHWKKNGQFIDLESSKRVSILGDPWFDSRRSRSIFGSVLGALSDDQWKLIAKNIRNQQQH 290 (292)
Q Consensus 216 ~~l~C~~~~~~p~~~~~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~a~n~~g~~~~ 290 (292)
+.|.|.+ .|.|.|.+.|+|+|+++... ..++.+..++. ....|.|..+..+|+|.|+|.|.|.+|+++.
T Consensus 1 v~l~C~v-~G~P~P~i~W~k~~~~i~~~-~~r~~~~~~~~----g~~~L~I~~~~~~D~G~Y~C~A~N~~G~~~~ 69 (75)
T cd05892 1 VKLECQI-SAIPPPKIFWKRNNEMVQYN-TDRISLYQDNS----GRVTLLIKNVNKKDAGWYTVSAVNEAGVATC 69 (75)
T ss_pred CEEEEEE-EecCCCeEEEEECCEECcCC-CCeEEEEEcCC----CcEEEEECCCChhhCEEEEEEEEcCcCeEEE
Confidence 5799998 99999999999999988632 33554432211 1125899999999999999999999999864
No 32
>cd05869 Ig5_NCAM-1 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). Ig5_NCAM-1: The fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM) and heterophilic (NCAM-non-NCAM) interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (tr
Probab=99.62 E-value=1.9e-14 Score=92.08 Aligned_cols=93 Identities=24% Similarity=0.474 Sum_probs=67.3
Q ss_pred CCcEEeCCCccEEecCCcEEEEEEEeeeCCCeeEEEECCeEEeeccCCCcceeEEe---eecEEEEccCCCCCCeEEEEE
Q psy15128 36 PPSFVVRPQDQKVGLNGIASFQCVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVT---QEGTLRIQGVQKEDAGFFVCS 112 (292)
Q Consensus 36 ~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~---~~~~l~i~~~~~~d~g~Y~C~ 112 (292)
.|.+...+.......|+.++|.|.+.|.|.|.+.|++++..+.........+.... ..+.|.|.+++.+|+|.|+|.
T Consensus 2 ~p~i~~~~~~~~~~~g~~v~l~C~~~G~P~P~v~W~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~I~~v~~~D~G~Y~C~ 81 (97)
T cd05869 2 KPKITYVENQTAMELEEQITLTCEASGDPIPSITWRTSTRNISSEEKTLDGHIVVRSHARVSSLTLKYIQYTDAGEYLCT 81 (97)
T ss_pred CceEEEccCceEEEcCCCEEEEEEeeEeCCCEEEEEECCccccCCccccCccEEEEcCccEEEEEEecCccCcCEEEEEE
Confidence 35555555555566689999999999999999999998765431111111122111 225799999999999999999
Q ss_pred EEeCCcCeeEEEEEEE
Q psy15128 113 ALSVAGSTTVRAFLQV 128 (292)
Q Consensus 113 ~~~~~~~~~~~~~l~v 128 (292)
|.|..|.....+.|.|
T Consensus 82 A~N~~G~~~~~~~l~v 97 (97)
T cd05869 82 ASNTIGQDSQSMYLEV 97 (97)
T ss_pred EecCCCCeeEEEEEEC
Confidence 9999998887776653
No 33
>cd04975 Ig4_SCFR_like Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR) and similar proteins. Ig4_SCFR_like; fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR). In addition to SCFR this group also includes the fourth Ig domain of platelet-derived growth factor receptors (PDGFR), alpha and beta, the fourth Ig domain of macrophage colony stimulating factor (M-CSF), and the Ig domain of the receptor tyrosine kinase KIT. SCFR and the PDGFR alpha and beta have similar organization: an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR, this fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth SCFR_Ig-like domain abolishes
Probab=99.62 E-value=1.1e-14 Score=92.96 Aligned_cols=84 Identities=17% Similarity=0.155 Sum_probs=65.2
Q ss_pred CccEEecCCcEEEEEEEee-eCCCeeEEEECCeEEeeccCCCcceeEE-----eeecEEEEccCCCCCCeEEEEEEEeCC
Q psy15128 44 QDQKVGLNGIASFQCVAEG-SPLPSVFWTQEGSQVLMFPGNAYGHLHV-----TQEGTLRIQGVQKEDAGFFVCSALSVA 117 (292)
Q Consensus 44 ~~~~~~~g~~~~l~C~~~~-~~~~~v~W~~~~~~~~~~~~~~~~~~~~-----~~~~~l~i~~~~~~d~g~Y~C~~~~~~ 117 (292)
....+.+|+++.|.|.+.| .|+|.+.|+|++..+... ........ ...+.|.|..+..+|+|.|+|.|.|..
T Consensus 11 ~~~~v~~G~~v~L~c~v~g~~P~p~v~W~Kdg~~i~~~--~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Ytc~A~N~~ 88 (101)
T cd04975 11 TTIFVNLGENLNLVVEVEAYPPPPHINWTYDNRTLTNK--LTEIVTSENESEYRYVSELKLVRLKESEAGTYTFLASNSD 88 (101)
T ss_pred ceEEEECCCCEEEEEEEEecCCCCccEEEeCCeeCCCC--cceeEEEeccCcceEEEEEEEeecCHhhCeeEEEEEECCC
Confidence 3567889999999999999 899999999999876421 11111111 124689999999999999999999999
Q ss_pred cCeeEEEEEEEE
Q psy15128 118 GSTTVRAFLQVT 129 (292)
Q Consensus 118 ~~~~~~~~l~v~ 129 (292)
|.....+.|.|.
T Consensus 89 G~~~~t~~L~V~ 100 (101)
T cd04975 89 ASKSLTFELYVN 100 (101)
T ss_pred ccEEEEEEEEEE
Confidence 988877777664
No 34
>cd05867 Ig4_L1-CAM_like Fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). Ig4_L1-CAM_like: fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.
Probab=99.62 E-value=1.3e-15 Score=92.84 Aligned_cols=68 Identities=25% Similarity=0.401 Sum_probs=54.9
Q ss_pred CCceEEEeeCCCCCCCCeEEEeEcCeEeccCCCc-eEEecCCCccccccccccccccccccccceeEEEEeeccccccc
Q psy15128 213 GETALLECGPPKGQPEPTLHWKKNGQFIDLESSK-RVSILGDPWFDSRRSRSIFGSVLGALSDDQWKLIAKNIRNQQQH 290 (292)
Q Consensus 213 g~~~~l~C~~~~~~p~~~~~W~~~g~~~~~~~~~-~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~a~n~~g~~~~ 290 (292)
|+.+.|.|.+ .|.|.|.++|+++|.++...... +.... ...|.|..+..+|+|.|.|.|.|..|....
T Consensus 1 G~~v~l~C~~-~G~P~p~i~W~k~g~~i~~~~~~~~~~~~---------~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~ 69 (76)
T cd05867 1 GETARLDCQV-EGIPTPNITWSINGAPIEGTDPDPRRHVS---------SGALILTDVQPSDTAVYQCEARNRHGNLLA 69 (76)
T ss_pred CCeEEEEEEe-eEeCCCeEEEEECCEECCCCCCCceEEee---------CCEEEECCCChhhCEEEEEEEECCCCeEEE
Confidence 7889999998 89999999999999988543222 33221 125889999999999999999999998764
No 35
>cd05855 Ig_TrkB_d5 Fifth domain (immunoglobulin-like) of Trk receptor TrkB. TrkB_d5: the fifth domain of Trk receptor TrkB, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors, which mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. The Trks are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkB shares significant sequence homology and domain organization with TrkA, and TrkC. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. In some cell systems NT-3 can activate TrkA and TrkB receptors. TrKB transcripts are found throughout multiple structures of the central and peripheral nervous systems.
Probab=99.61 E-value=8.9e-16 Score=92.66 Aligned_cols=71 Identities=20% Similarity=0.265 Sum_probs=51.6
Q ss_pred EEeeCCCCCCCCeEEEeEcCeEeccCCCceEEecCCCccccccccccccccccccccceeEEEEeecccccccC
Q psy15128 218 LECGPPKGQPEPTLHWKKNGQFIDLESSKRVSILGDPWFDSRRSRSIFGSVLGALSDDQWKLIAKNIRNQQQHG 291 (292)
Q Consensus 218 l~C~~~~~~p~~~~~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~a~n~~g~~~~~ 291 (292)
|.|.| .|+|.|.++|+|||++|.........+..... ......|.|..+..+|+|.|+|+|+|.+|+++++
T Consensus 3 i~~~v-~G~P~Pti~W~kng~~l~~~~~~~~~~~~~~~--~~~~~~L~i~~~~~~D~G~YtC~A~N~~G~~~~~ 73 (79)
T cd05855 3 IPFTV-KGNPKPTLQWFHEGAILNESEYICTKIHVINN--TEYHGCLQLDNPTHLNNGIYTLVAKNEYGEDEKN 73 (79)
T ss_pred EEEEE-eEeCCCceEEEECCEECCCCcceeeeeEeecc--cceEEEEEECCCCcccCEEEEEEEEcCCcccceE
Confidence 67998 99999999999999999633221111111100 0112368899999999999999999999998753
No 36
>cd05863 Ig2_VEGFR-3 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3). Ig2_VEGFR-3: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-3 (Flt-4) binds two members of the VEGF family (VEGF-C and -D) and is involved in tumor angiogenesis and growth.
Probab=99.61 E-value=7.7e-16 Score=90.03 Aligned_cols=59 Identities=19% Similarity=0.278 Sum_probs=49.4
Q ss_pred eEEEeeCCCCCCCCeEEEeEcCeEeccCCCceEEecCCCccccccccccccccccccccceeEEEEeeccccccc
Q psy15128 216 ALLECGPPKGQPEPTLHWKKNGQFIDLESSKRVSILGDPWFDSRRSRSIFGSVLGALSDDQWKLIAKNIRNQQQH 290 (292)
Q Consensus 216 ~~l~C~~~~~~p~~~~~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~a~n~~g~~~~ 290 (292)
++|.|.+ .|.|+|.++|+|+|++|... .....|.|..+..+|+|.|+|.|+|..|..++
T Consensus 1 ~~l~c~v-~g~P~P~v~W~kdg~~l~~~---------------~~~~~L~i~~v~~~D~G~YtC~a~N~~g~~~~ 59 (67)
T cd05863 1 VKLPVKV-AAYPPPEFQWYKDGKLISGK---------------HSQHSLQIKDVTEASAGTYTLVLWNSAAGLEK 59 (67)
T ss_pred CEEEEEE-EEeCCCEEEEEECCEECccc---------------CCcCEEEECCCCHHHCEEEEEEEEECCccEEE
Confidence 5799998 99999999999999998411 01226889999999999999999999997654
No 37
>cd05863 Ig2_VEGFR-3 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3). Ig2_VEGFR-3: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-3 (Flt-4) binds two members of the VEGF family (VEGF-C and -D) and is involved in tumor angiogenesis and growth.
Probab=99.61 E-value=8.4e-15 Score=85.64 Aligned_cols=66 Identities=18% Similarity=0.307 Sum_probs=55.4
Q ss_pred EEEEEEEeeeCCCeeEEEECCeEEeeccCCCcceeEEeeecEEEEccCCCCCCeEEEEEEEeCCcCeeEEEEEEEE
Q psy15128 54 ASFQCVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVT 129 (292)
Q Consensus 54 ~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~~~~~~~~~l~v~ 129 (292)
+.|.|.+.|.|.|.+.|+|++..+.. ....+.|.|.++..+|+|.|+|.+.|..|....+..+.+.
T Consensus 1 ~~l~c~v~g~P~P~v~W~kdg~~l~~----------~~~~~~L~i~~v~~~D~G~YtC~a~N~~g~~~~~~~~~l~ 66 (67)
T cd05863 1 VKLPVKVAAYPPPEFQWYKDGKLISG----------KHSQHSLQIKDVTEASAGTYTLVLWNSAAGLEKRISLELI 66 (67)
T ss_pred CEEEEEEEEeCCCEEEEEECCEECcc----------cCCcCEEEECCCCHHHCEEEEEEEEECCccEEEEEEEEEE
Confidence 47999999999999999999987631 1124589999999999999999999999987777777654
No 38
>cd05747 Ig5_Titin_like M5, fifth immunoglobulin (Ig)-like domain of human titin C terminus and similar proteins. Ig5_Titin_like: domain similar to the M5, fifth immunoglobulin (Ig)-like domain from the human titin C terminus. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic; depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone, and appears to function similar to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching.
Probab=99.61 E-value=4.2e-15 Score=94.22 Aligned_cols=79 Identities=27% Similarity=0.495 Sum_probs=63.1
Q ss_pred CcceEEeCCCceEEEeeCCCCCCCCeEEEeEcCeEeccCCCceEEecCCCccccccccccccccccccccceeEEEEeec
Q psy15128 205 PKDTRVASGETALLECGPPKGQPEPTLHWKKNGQFIDLESSKRVSILGDPWFDSRRSRSIFGSVLGALSDDQWKLIAKNI 284 (292)
Q Consensus 205 ~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~a~n~ 284 (292)
+....+.+|+.+.|.|.+ .+.|.|.+.|+++|..+. .+.++.+.... ....|.|..+...|+|.|+|.|+|.
T Consensus 10 p~~~~~~~G~~~~L~C~~-~g~P~p~v~W~k~g~~l~--~~~~~~~~~~~-----~~~~L~i~~~~~~D~G~Y~C~a~N~ 81 (92)
T cd05747 10 PRSLTVSEGESARFSCDV-DGEPAPTVTWMREGQIIV--SSQRHQITSTE-----YKSTFEISKVQMSDEGNYTVVVENS 81 (92)
T ss_pred CccEEEeCCCcEEEEEEE-eecCCCEEEEEECCEECC--CCCcEEEEEcC-----CeeEEEECCCCcccCEeEEEEEEcC
Confidence 457789999999999998 899999999999999875 33333332221 1236889999999999999999999
Q ss_pred ccccccC
Q psy15128 285 RNQQQHG 291 (292)
Q Consensus 285 ~g~~~~~ 291 (292)
.|.++.+
T Consensus 82 ~G~~~~~ 88 (92)
T cd05747 82 EGKQEAQ 88 (92)
T ss_pred CCCEeEE
Confidence 9998753
No 39
>cd04971 Ig_TrKABC_d5 Fifth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC. TrkABC_d5: the fifth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrkB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor foun
Probab=99.60 E-value=1.7e-15 Score=92.78 Aligned_cols=73 Identities=19% Similarity=0.288 Sum_probs=52.8
Q ss_pred EEeeCCCCCCCCeEEEeEcCeEeccCCCceEEecCCCccccccccccccccccccccceeEEEEeecccccccC
Q psy15128 218 LECGPPKGQPEPTLHWKKNGQFIDLESSKRVSILGDPWFDSRRSRSIFGSVLGALSDDQWKLIAKNIRNQQQHG 291 (292)
Q Consensus 218 l~C~~~~~~p~~~~~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~a~n~~g~~~~~ 291 (292)
|.|.+ .|.|.|.++|+|+|++|.......................|.|..+..+|+|.|+|+|+|.+|+++.+
T Consensus 3 i~~~v-~G~P~P~v~W~k~g~~i~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~YtC~A~N~~G~~~~~ 75 (81)
T cd04971 3 IPFTV-RGNPKPTLTWYHNGAVLNESDYIRTEIHYEVTTPTEYHGCLQFDNPTHVNNGNYTLVASNEYGQDSKS 75 (81)
T ss_pred EEEEe-EeeCCCcEEEEECCEECcCCCceeEEEEeecccccccEEEEEECCCCcccCeEEEEEEEeCCCCeeeE
Confidence 68998 99999999999999999643322222222110111223368899999999999999999999998753
No 40
>cd05893 Ig_Palladin_C C-terminal immunoglobulin (Ig)-like domain of palladin. Ig_Palladin_C: C-terminal immunoglobulin (Ig)-like domain of palladin. Palladin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to this family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Palladin binds to alpha-actinin ezrin, vasodilator-stimulated phosphoprotein VASP, SPIN90 (DIP, mDia interacting protein), and Src. Palladin also binds F-actin directly, via its Ig3 domain. Palladin is expressed as several alternatively spliced isoforms, having various combinations of Ig-like domains, in a cell-type-specific manner. It has been suggested that palladin's different Ig-like domains may be specialized for distinct functions.
Probab=99.60 E-value=1.7e-15 Score=91.38 Aligned_cols=70 Identities=23% Similarity=0.307 Sum_probs=54.7
Q ss_pred eEEEeeCCCCCCCCeEEEeEcCeEeccCCCceEEecCCCccccccccccccccccccccceeEEEEeecccccccC
Q psy15128 216 ALLECGPPKGQPEPTLHWKKNGQFIDLESSKRVSILGDPWFDSRRSRSIFGSVLGALSDDQWKLIAKNIRNQQQHG 291 (292)
Q Consensus 216 ~~l~C~~~~~~p~~~~~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~a~n~~g~~~~~ 291 (292)
++|+|.+ .|.|.|.+.|+|++.++.. ...++.+..++. ....|.|..+..+|+|.|+|.|.|.+|+.+.+
T Consensus 1 v~l~C~v-~G~P~P~v~W~k~~~~l~~-~~~~~~~~~~~~----~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~ 70 (75)
T cd05893 1 VRLECRV-SGVPHPQIFWKKENESLTH-NTDRVSMHQDNC----GYICLLIQGATKEDAGWYTVSAKNEAGIVSCT 70 (75)
T ss_pred CEEEEEE-eEecCCEEEEEECCEECCC-CCCeEEEEEcCC----CEEEEEECCCCHHHCEEEEEEEEcCCCEEEEE
Confidence 5799998 9999999999999998853 234555433221 11248899999999999999999999998653
No 41
>PF07679 I-set: Immunoglobulin I-set domain; InterPro: IPR013098 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents I-set domains, which are found in several cell adhesion molecules, including vascular (VCAM), intercellular (ICAM), neural (NCAM) and mucosal addressin (MADCAM) cell adhesion molecules, as well as junction adhesion molecules (JAM). I-set domains are also present in several other diverse protein families, including several tyrosine-protein kinase receptors, the hemolymph protein hemolin, the muscle proteins titin, telokin, and twitchin, the neuronal adhesion molecule axonin-1 [], and the signalling molecule semaphorin 4D that is involved in axonal guidance, immune function and angiogenesis [].; PDB: 3MTR_A 2EDK_A 3DMK_B 1KOA_A 3NCM_A 2NCM_A 2V9Q_A 2CR3_A 3QQN_A 3QR2_A ....
Probab=99.60 E-value=2e-14 Score=91.10 Aligned_cols=90 Identities=29% Similarity=0.533 Sum_probs=71.3
Q ss_pred CcEEeCCCccEEecCCcEEEEEEEeeeCCCeeEEEECCeEEeeccCCCcceeEEeeecEEEEccCCCCCCeEEEEEEEeC
Q psy15128 37 PSFVVRPQDQKVGLNGIASFQCVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSV 116 (292)
Q Consensus 37 p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~ 116 (292)
|.+...+....+.+|+++.|.|.+.+.|.+.+.|++++..+.. ..............|.|.++..+|+|.|+|.+.+.
T Consensus 1 P~~~~~~~~~~v~~G~~~~l~c~~~~~p~~~v~W~~~~~~l~~--~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~n~ 78 (90)
T PF07679_consen 1 PVFTKKPKDVTVKEGESVTLECEVSGNPPPTVTWYKNGRPLTS--SQRYQIESDGGSSSLTIKNVTREDAGTYTCVASNS 78 (90)
T ss_dssp EEEEEESSEEEEETTSEEEEEEEEEESSSSEEEEEETTEEEES--SSSEEEEEETTEEEEEESSESGGGSEEEEEEEEET
T ss_pred CEEEEecCCEEEeCCCEEEEEEEEEeCCCCcccccccccceee--eeeeeeecccceeEEccCCCChhhCEEEEEEEEEC
Confidence 4566677888999999999999999999999999999887753 12222222224568999999999999999999999
Q ss_pred CcCeeEEEEEEE
Q psy15128 117 AGSTTVRAFLQV 128 (292)
Q Consensus 117 ~~~~~~~~~l~v 128 (292)
.|.......|.|
T Consensus 79 ~g~~~~~~~l~V 90 (90)
T PF07679_consen 79 SGEATASVNLTV 90 (90)
T ss_dssp TEEEEEEEEEEE
T ss_pred CCEEEEEEEEEC
Confidence 887777766654
No 42
>cd05892 Ig_Myotilin_C C-terminal immunoglobulin (Ig)-like domain of myotilin. Ig_Myotilin_C: C-terminal immunoglobulin (Ig)-like domain of myotilin. Mytolin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to the latter family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Myotilin is most abundant in skeletal and cardiac muscle, and is involved in maintaining sarcomere integrity. It binds to alpha-actinin, filamin and actin. Mutations in myotilin lead to muscle disorders.
Probab=99.60 E-value=7.1e-15 Score=88.48 Aligned_cols=71 Identities=32% Similarity=0.557 Sum_probs=55.7
Q ss_pred EEEEEEEeeeCCCeeEEEECCeEEeeccCCCcceeEEee--e--cEEEEccCCCCCCeEEEEEEEeCCcCeeEEEEEEE
Q psy15128 54 ASFQCVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQ--E--GTLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQV 128 (292)
Q Consensus 54 ~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~--~--~~l~i~~~~~~d~g~Y~C~~~~~~~~~~~~~~l~v 128 (292)
+.|.|.+.|.|.|.+.|+|++..+.... .+..... . ..|.|.++..+|+|.|+|.+.|..|.....+.|.|
T Consensus 1 v~l~C~v~G~P~P~i~W~k~~~~i~~~~----~r~~~~~~~~g~~~L~I~~~~~~D~G~Y~C~A~N~~G~~~~~a~L~V 75 (75)
T cd05892 1 VKLECQISAIPPPKIFWKRNNEMVQYNT----DRISLYQDNSGRVTLLIKNVNKKDAGWYTVSAVNEAGVATCHARLDV 75 (75)
T ss_pred CEEEEEEEecCCCeEEEEECCEECcCCC----CeEEEEEcCCCcEEEEECCCChhhCEEEEEEEEcCcCeEEEEEEEeC
Confidence 4799999999999999999998763211 1222221 2 27999999999999999999999998888777653
No 43
>cd05723 Ig4_Neogenin Fourth immunoglobulin (Ig)-like domain in neogenin and similar proteins. Ig4_Neogenin: fourth immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.
Probab=99.60 E-value=2.5e-15 Score=90.16 Aligned_cols=66 Identities=26% Similarity=0.413 Sum_probs=52.4
Q ss_pred ceEEEeeCCCCCCCCeEEEeEcCeEeccCCCceEEecCCCccccccccccccccccccccceeEEEEeecccccccC
Q psy15128 215 TALLECGPPKGQPEPTLHWKKNGQFIDLESSKRVSILGDPWFDSRRSRSIFGSVLGALSDDQWKLIAKNIRNQQQHG 291 (292)
Q Consensus 215 ~~~l~C~~~~~~p~~~~~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~a~n~~g~~~~~ 291 (292)
++.|.|.+ .|.|.|.+.|+++|.++.. ..++.+..++ .|.|..+..+|+|.|+|.|+|..|+++.+
T Consensus 1 ~v~l~C~~-~G~P~p~v~W~k~g~~~~~--~~~~~~~~~~--------~l~i~~v~~~D~G~Y~C~A~N~~G~~~~~ 66 (71)
T cd05723 1 DVIFECEV-TGKPTPTVKWVKNGDMVIP--SDYFKIVKEH--------NLQVLGLVKSDEGFYQCIAENDVGNVQAS 66 (71)
T ss_pred CEEEEEEE-EEeCCCEEEEEECCeECCC--CCCEEEEecC--------CEEEEcCCcccCEEEEEEEEcCCCEEEEE
Confidence 47899999 8999999999999988752 2333333232 36677899999999999999999998754
No 44
>cd04972 Ig_TrkABC_d4 Fourth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC. TrkABC_d4: the fourth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor fo
Probab=99.59 E-value=5.1e-15 Score=93.39 Aligned_cols=78 Identities=19% Similarity=0.237 Sum_probs=60.0
Q ss_pred cceEEeCCCceEEEeeCCCCCCCCeEEEeEcCeEeccCCCceEEecCCCccccccccccccccccccccceeEEEEeecc
Q psy15128 206 KDTRVASGETALLECGPPKGQPEPTLHWKKNGQFIDLESSKRVSILGDPWFDSRRSRSIFGSVLGALSDDQWKLIAKNIR 285 (292)
Q Consensus 206 ~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~a~n~~ 285 (292)
....+.+|+.+.|.|.+ .|.|.|.+.|+++|..+... ........ .....|.|..+..+|.|.|+|.|+|.+
T Consensus 8 ~~~~v~~G~~v~l~C~~-~G~P~p~v~W~~~g~~~~~~--~~~~~~~~-----~~~~~L~I~~v~~~D~g~Y~C~A~N~~ 79 (90)
T cd04972 8 NATVVYEGGTATIRCTA-EGSPLPKVEWIIAGLIVIQT--RTDTLETT-----VDIYNLQLSNITSETQTTVTCTAENPV 79 (90)
T ss_pred cCEEEcCCCcEEEEEEE-EEcCCCeEEEEECCEEccCC--ccEEEEec-----CCEEEEEEecCCcccCEEEEEEEECCC
Confidence 34568899999999999 89999999999999887422 11111100 122368899999999999999999999
Q ss_pred cccccC
Q psy15128 286 NQQQHG 291 (292)
Q Consensus 286 g~~~~~ 291 (292)
|+++.+
T Consensus 80 G~~~~~ 85 (90)
T cd04972 80 GQANVS 85 (90)
T ss_pred CceeEE
Confidence 997653
No 45
>cd05865 Ig1_NCAM-1 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. Ig1_NCAM-1: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (trans
Probab=99.59 E-value=1.9e-14 Score=91.16 Aligned_cols=85 Identities=18% Similarity=0.382 Sum_probs=62.8
Q ss_pred EeCCCccEEecCCcEEEEEEEeeeCC-CeeEEEE-CCeEEeeccCCCcceeEEe----eecEEEEccCCCCCCeEEEEEE
Q psy15128 40 VVRPQDQKVGLNGIASFQCVAEGSPL-PSVFWTQ-EGSQVLMFPGNAYGHLHVT----QEGTLRIQGVQKEDAGFFVCSA 113 (292)
Q Consensus 40 ~~~~~~~~~~~g~~~~l~C~~~~~~~-~~v~W~~-~~~~~~~~~~~~~~~~~~~----~~~~l~i~~~~~~d~g~Y~C~~ 113 (292)
.+.|....+..|+.++|.|.+.|.|. |.+.|++ ++..+.. .. .+.... ..+.|.|.+++.+|+|.|+|.|
T Consensus 4 ~~~p~~~~v~~G~~v~l~C~v~G~P~~p~i~W~~~~g~~l~~-~~---~r~~v~~~~~~~~~L~I~~v~~~D~G~YtC~A 79 (96)
T cd05865 4 DIVPSQGEISVGESKFFLCQVAGEAKDKDISWFSPNGEKLTP-NQ---QRISVVRNDDYSSTLTIYNANIDDAGIYKCVV 79 (96)
T ss_pred EEeCCccEECCCCeEEEEEEEeCCCCCCEEEEECCCCcCccc-cC---CeEEEEeCCCCceEEEEeccChhhCEEEEEEE
Confidence 34566677899999999999999984 6999998 5654421 11 122221 1358999999999999999999
Q ss_pred EeCC-cCeeEEEEEEE
Q psy15128 114 LSVA-GSTTVRAFLQV 128 (292)
Q Consensus 114 ~~~~-~~~~~~~~l~v 128 (292)
.|.. +....++.|.|
T Consensus 80 ~N~~~g~~~~s~~l~v 95 (96)
T cd05865 80 SNEDEGESEATVNVKI 95 (96)
T ss_pred EcCCCCcEEEEEEEEE
Confidence 9986 66666666654
No 46
>cd05728 Ig4_Contactin-2-like Fourth Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins. Ig4_Contactin-2-like: fourth Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.
Probab=99.59 E-value=2.9e-14 Score=88.81 Aligned_cols=82 Identities=23% Similarity=0.463 Sum_probs=66.5
Q ss_pred EeCCCccEEecCCcEEEEEEEeeeCCCeeEEEECCeEEeeccCCCcceeEEeeecEEEEccCCCCCCeEEEEEEEeCCcC
Q psy15128 40 VVRPQDQKVGLNGIASFQCVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGS 119 (292)
Q Consensus 40 ~~~~~~~~~~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~~~ 119 (292)
...|....+..|+.+.|.|.+.|.|.|.+.|++++..+.. ..+.. ..++.|.|.++..+|+|.|+|.+.|..|.
T Consensus 3 ~~~p~~~~~~~G~~~~l~C~~~g~p~p~v~W~k~g~~~~~-----~~~~~-~~~~~L~i~~~~~~D~G~Y~C~a~N~~G~ 76 (85)
T cd05728 3 LKVISDTEADIGSSLRWECKASGNPRPAYRWLKNGQPLAS-----ENRIE-VEAGDLRITKLSLSDSGMYQCVAENKHGT 76 (85)
T ss_pred cccCCccEEcCCCcEEEEEEeeEeCCCEEEEEECCEECCC-----CCeEE-EeCCEEEEeeCCHHHCEEEEEEEECCCCe
Confidence 3456678899999999999999999999999999986531 11222 34568999999999999999999999998
Q ss_pred eeEEEEEE
Q psy15128 120 TTVRAFLQ 127 (292)
Q Consensus 120 ~~~~~~l~ 127 (292)
....+.|.
T Consensus 77 ~~~~~~l~ 84 (85)
T cd05728 77 IYASAELA 84 (85)
T ss_pred EEEEEEEE
Confidence 77766654
No 47
>cd05746 Ig4_Peroxidasin Fourth immunoglobulin (Ig)-like domain of peroxidasin. Ig4_Peroxidasin: the fourth immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted, and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells, which have undergone programmed cell death, and protection of the organism against non-self.
Probab=99.59 E-value=2.8e-15 Score=89.44 Aligned_cols=65 Identities=22% Similarity=0.457 Sum_probs=53.4
Q ss_pred eEEEeeCCCCCCCCeEEEeEcCeEeccCCCceEEecCCCccccccccccccccccccccceeEEEEeecccccccC
Q psy15128 216 ALLECGPPKGQPEPTLHWKKNGQFIDLESSKRVSILGDPWFDSRRSRSIFGSVLGALSDDQWKLIAKNIRNQQQHG 291 (292)
Q Consensus 216 ~~l~C~~~~~~p~~~~~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~a~n~~g~~~~~ 291 (292)
|.|.|.+ .|.|.|.+.|+++|.++. ...++.+..+ ..|.|..+..+|+|.|+|.|.|..|.++.+
T Consensus 1 v~L~C~~-~g~P~p~i~W~k~g~~~~--~~~~~~~~~~--------~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~ 65 (69)
T cd05746 1 VQIPCSA-QGDPEPTITWNKDGVQVT--ESGKFHISPE--------GYLAIRDVGVADQGRYECVARNTIGYASVS 65 (69)
T ss_pred CEeEecc-eEeCCCEEEEEECCEECC--CCCCEEECCC--------CEEEECcCChhhCEEEEEEEECCCCcEEEE
Confidence 5799998 899999999999998885 3344444333 258899999999999999999999998754
No 48
>cd05724 Ig2_Robo Second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Ig2_Robo: domain similar to the second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antago
Probab=99.59 E-value=1.3e-14 Score=90.97 Aligned_cols=76 Identities=39% Similarity=0.799 Sum_probs=61.0
Q ss_pred CcceEEeCCCceEEEeeCCCCCCCCeEEEeEcCeEeccCCCceEEecCCCccccccccccccccccccccceeEEEEeec
Q psy15128 205 PKDTRVASGETALLECGPPKGQPEPTLHWKKNGQFIDLESSKRVSILGDPWFDSRRSRSIFGSVLGALSDDQWKLIAKNI 284 (292)
Q Consensus 205 ~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~a~n~ 284 (292)
|....+.+|+.+.|.|.+..+.|.+.+.|+++|..+... ..++....+ ..|.|..+..+|+|.|+|.|+|.
T Consensus 3 p~~~~~~~G~~v~l~C~~~~g~p~p~i~W~k~g~~~~~~-~~~~~~~~~--------~~L~I~~~~~~D~G~Y~C~a~N~ 73 (86)
T cd05724 3 PSDTQVAVGEMAVLECSPPRGHPEPTVSWRKDGQPLNLD-NERVRIVDD--------GNLLIAEARKSDEGTYKCVATNM 73 (86)
T ss_pred CccEEEeCCCCEEEEEECCCCCCCCEEEEEECCEECCCC-CCCEEEccC--------CEEEEeECCcccCEEEEEEEEec
Confidence 457788999999999997568999999999999988532 223333222 26889999999999999999999
Q ss_pred ccccc
Q psy15128 285 RNQQQ 289 (292)
Q Consensus 285 ~g~~~ 289 (292)
.|...
T Consensus 74 ~G~~~ 78 (86)
T cd05724 74 VGERE 78 (86)
T ss_pred cCcee
Confidence 99864
No 49
>cd05730 Ig3_NCAM-1_like Third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). Ig3_NCAM-1_like: domain similar to the third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1,and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the
Probab=99.59 E-value=7.6e-15 Score=93.77 Aligned_cols=76 Identities=25% Similarity=0.461 Sum_probs=60.8
Q ss_pred cceEEeCCCceEEEeeCCCCCCCCeEEEeEcCeEeccCCCceEEecCCCccccccccccccccccccccceeEEEEeecc
Q psy15128 206 KDTRVASGETALLECGPPKGQPEPTLHWKKNGQFIDLESSKRVSILGDPWFDSRRSRSIFGSVLGALSDDQWKLIAKNIR 285 (292)
Q Consensus 206 ~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~a~n~~ 285 (292)
....+..|+.+.|.|.+ .|.|.|.+.|+++|..+... ..++..... ...|.|..+..+|+|.|+|.|.|.+
T Consensus 11 ~~~~~~~G~~v~L~C~~-~g~P~p~v~W~k~g~~~~~~-~~~~~~~~~-------~~~L~I~~v~~~D~G~Y~C~a~N~~ 81 (95)
T cd05730 11 VNATANLGQSVTLACDA-DGFPEPTMTWTKDGEPIESG-EEKYSFNED-------GSEMTILDVDKLDEAEYTCIAENKA 81 (95)
T ss_pred cceEEeCCCCEEEEEec-cEeCCCEEEEEECCEECcCC-CCEEEEeCC-------CCEEEECCCChhhCEEEEEEEEcCC
Confidence 35578899999999998 89999999999999988532 233333222 1258899999999999999999999
Q ss_pred ccccc
Q psy15128 286 NQQQH 290 (292)
Q Consensus 286 g~~~~ 290 (292)
|.+..
T Consensus 82 G~~~~ 86 (95)
T cd05730 82 GEQEA 86 (95)
T ss_pred CeEEE
Confidence 98764
No 50
>cd05870 Ig5_NCAM-2 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM). Ig5_NCAM-2: the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.
Probab=99.59 E-value=5e-14 Score=90.34 Aligned_cols=90 Identities=27% Similarity=0.520 Sum_probs=65.2
Q ss_pred CcEEeCCCccEEecCCcEEEEEEEeeeCCCeeEEEECC--eEEeeccCCCcceeEEe---eecEEEEccCCCCCCeEEEE
Q psy15128 37 PSFVVRPQDQKVGLNGIASFQCVAEGSPLPSVFWTQEG--SQVLMFPGNAYGHLHVT---QEGTLRIQGVQKEDAGFFVC 111 (292)
Q Consensus 37 p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~v~W~~~~--~~~~~~~~~~~~~~~~~---~~~~l~i~~~~~~d~g~Y~C 111 (292)
|.+. .+.+..+.+|++++|.|.+.|.|.|.+.|++.. ..+.........+.... ....|.|.+++.+|+|.|+|
T Consensus 3 p~i~-~~~~~~~~~G~~v~l~C~~~G~P~p~i~W~k~~~g~~~~~~~~~~~~r~~v~~~~~~~~L~I~~v~~~D~G~Y~C 81 (98)
T cd05870 3 PHII-QLKNETTVENGAATLSCKAEGEPIPEITWKRASDGHTFSEGDKSPDGRIEVKGQHGESSLHIKDVKLSDSGRYDC 81 (98)
T ss_pred CEEE-eeccEEEcCCCcEEEEEecccCCCCeEEEEECCCCceeccCCcCcCceEEEeecCCeeEEEEeeCCcCCCEEEEE
Confidence 4443 356788999999999999999999999999953 22211111111223222 23589999999999999999
Q ss_pred EEEeCCcCeeEEEEEE
Q psy15128 112 SALSVAGSTTVRAFLQ 127 (292)
Q Consensus 112 ~~~~~~~~~~~~~~l~ 127 (292)
.|.|..|.....+.|.
T Consensus 82 ~A~N~~G~~~~~~~l~ 97 (98)
T cd05870 82 EAASRIGGHQKSMYLD 97 (98)
T ss_pred EEeccCCcceeEEEEe
Confidence 9999999877766654
No 51
>cd05867 Ig4_L1-CAM_like Fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). Ig4_L1-CAM_like: fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.
Probab=99.59 E-value=5.1e-14 Score=85.77 Aligned_cols=75 Identities=24% Similarity=0.437 Sum_probs=59.6
Q ss_pred CCcEEEEEEEeeeCCCeeEEEECCeEEeeccCCCcceeEEeeecEEEEccCCCCCCeEEEEEEEeCCcCeeEEEEEEE
Q psy15128 51 NGIASFQCVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQV 128 (292)
Q Consensus 51 g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~~~~~~~~~l~v 128 (292)
|+.+.|.|.+.|.|.|.+.|++++..+.... ...+. ....+.|.|.+++.+|+|.|+|.+.|..|.....+.|.|
T Consensus 1 G~~v~l~C~~~G~P~p~i~W~k~g~~i~~~~--~~~~~-~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~V 75 (76)
T cd05867 1 GETARLDCQVEGIPTPNITWSINGAPIEGTD--PDPRR-HVSSGALILTDVQPSDTAVYQCEARNRHGNLLANAHVHV 75 (76)
T ss_pred CCeEEEEEEeeEeCCCeEEEEECCEECCCCC--CCceE-EeeCCEEEECCCChhhCEEEEEEEECCCCeEEEEEEEEE
Confidence 6789999999999999999999998663211 11122 234568999999999999999999999998877776655
No 52
>cd05891 Ig_M-protein_C C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2). Ig_M-protein_C: the C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2). M-protein is a structural protein localized to the M-band, a transverse structure in the center of the sarcomere, and is a candidate for M-band bridges. M-protein is modular consisting mainly of repetitive IG-like and fibronectin type III (FnIII) domains, and has a muscle-type specific expression pattern. M-protein is present in fast fibers.
Probab=99.59 E-value=7.5e-15 Score=92.73 Aligned_cols=81 Identities=22% Similarity=0.315 Sum_probs=63.4
Q ss_pred CCCcceEEeCCCceEEEeeCCCCCCCCeEEEeEcCeEeccCCCceEEecCCCccccccccccccccccccccceeEEEEe
Q psy15128 203 AEPKDTRVASGETALLECGPPKGQPEPTLHWKKNGQFIDLESSKRVSILGDPWFDSRRSRSIFGSVLGALSDDQWKLIAK 282 (292)
Q Consensus 203 g~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~a~ 282 (292)
|.|....+.+|+.+.|.|.+ .+.|.|.+.|++++..+............. ....|.|..+..+|+|.|+|.|.
T Consensus 6 ~~p~~v~v~eG~~v~L~C~v-~g~P~p~i~W~k~~~~~~~~~~~~~~~~~~------~~~~L~I~~~~~~D~G~Y~C~a~ 78 (92)
T cd05891 6 GLPDVVTIMEGKTLNLTCTV-FGNPDPEVIWFKNDQDIELSEHYSVKLEQG------KYASLTIKGVTSEDSGKYSINVK 78 (92)
T ss_pred cCCCcEEEcCCCEEEEEEEE-EEeCCCeEEEEECCEECCCCCCEEEEEcCC------CEEEEEECCCChhhCEEEEEEEE
Confidence 45678899999999999998 789999999999998875332222222221 11258899999999999999999
Q ss_pred eccccccc
Q psy15128 283 NIRNQQQH 290 (292)
Q Consensus 283 n~~g~~~~ 290 (292)
|..|.++.
T Consensus 79 N~~G~~~~ 86 (92)
T cd05891 79 NKYGGETV 86 (92)
T ss_pred eCCCceee
Confidence 99999864
No 53
>cd05865 Ig1_NCAM-1 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. Ig1_NCAM-1: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (trans
Probab=99.58 E-value=5.1e-15 Score=93.74 Aligned_cols=80 Identities=16% Similarity=0.320 Sum_probs=58.9
Q ss_pred CcceEEeCCCceEEEeeCCCCCCC-CeEEEeE-cCeEeccCCCceEEecCCCccccccccccccccccccccceeEEEEe
Q psy15128 205 PKDTRVASGETALLECGPPKGQPE-PTLHWKK-NGQFIDLESSKRVSILGDPWFDSRRSRSIFGSVLGALSDDQWKLIAK 282 (292)
Q Consensus 205 ~~~~~~~~g~~~~l~C~~~~~~p~-~~~~W~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~a~ 282 (292)
|....+..|+.++|.|.+ .|.|. |.+.|++ +|+.+.. .+.++.+..+.. ....|.|..+..+|+|.|+|.|+
T Consensus 7 p~~~~v~~G~~v~l~C~v-~G~P~~p~i~W~~~~g~~l~~-~~~r~~v~~~~~----~~~~L~I~~v~~~D~G~YtC~A~ 80 (96)
T cd05865 7 PSQGEISVGESKFFLCQV-AGEAKDKDISWFSPNGEKLTP-NQQRISVVRNDD----YSSTLTIYNANIDDAGIYKCVVS 80 (96)
T ss_pred CCccEECCCCeEEEEEEE-eCCCCCCEEEEECCCCcCccc-cCCeEEEEeCCC----CceEEEEeccChhhCEEEEEEEE
Confidence 345678899999999998 88884 7999998 7876642 133443322211 12368999999999999999999
Q ss_pred ecc-ccccc
Q psy15128 283 NIR-NQQQH 290 (292)
Q Consensus 283 n~~-g~~~~ 290 (292)
|.+ |+++.
T Consensus 81 N~~~g~~~~ 89 (96)
T cd05865 81 NEDEGESEA 89 (96)
T ss_pred cCCCCcEEE
Confidence 997 66543
No 54
>cd05730 Ig3_NCAM-1_like Third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). Ig3_NCAM-1_like: domain similar to the third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1,and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the
Probab=99.58 E-value=6e-14 Score=89.61 Aligned_cols=81 Identities=23% Similarity=0.403 Sum_probs=64.8
Q ss_pred ccEEecCCcEEEEEEEeeeCCCeeEEEECCeEEeeccCCCcceeEEe-eecEEEEccCCCCCCeEEEEEEEeCCcCeeEE
Q psy15128 45 DQKVGLNGIASFQCVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVT-QEGTLRIQGVQKEDAGFFVCSALSVAGSTTVR 123 (292)
Q Consensus 45 ~~~~~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~-~~~~l~i~~~~~~d~g~Y~C~~~~~~~~~~~~ 123 (292)
...+..|+.+.|.|.+.|.|.+.+.|++++..+... ..+.... ..+.|.|.+++.+|.|.|+|.+.|..|.....
T Consensus 12 ~~~~~~G~~v~L~C~~~g~P~p~v~W~k~g~~~~~~----~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~ 87 (95)
T cd05730 12 NATANLGQSVTLACDADGFPEPTMTWTKDGEPIESG----EEKYSFNEDGSEMTILDVDKLDEAEYTCIAENKAGEQEAE 87 (95)
T ss_pred ceEEeCCCCEEEEEeccEeCCCEEEEEECCEECcCC----CCEEEEeCCCCEEEECCCChhhCEEEEEEEEcCCCeEEEE
Confidence 446788999999999999999999999998865321 1122222 23479999999999999999999999988888
Q ss_pred EEEEEE
Q psy15128 124 AFLQVT 129 (292)
Q Consensus 124 ~~l~v~ 129 (292)
..|.|.
T Consensus 88 ~~L~V~ 93 (95)
T cd05730 88 IHLKVF 93 (95)
T ss_pred EEEEEE
Confidence 777765
No 55
>cd05848 Ig1_Contactin-5 First Ig domain of contactin-5. Ig1_Contactin-5: First Ig domain of the neural cell adhesion molecule contactin-5. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains, anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. In rats, a lack of contactin-5 (NB-2) results in an impairment of the neuronal activity in the auditory system. Contactin-5 is expressed specifically in the postnatal nervous system, peaking at about 3 weeks postnatal. Contactin-5 is highly expressed in the adult human brain in the occipital lobe and in the amygdala; lower levels of expression have been detected in the corpus callosum, caudate nucleus, and spinal cord.
Probab=99.58 E-value=6.3e-15 Score=93.42 Aligned_cols=68 Identities=26% Similarity=0.464 Sum_probs=53.3
Q ss_pred CCCceEEEeeCCCCCCCCeEEEeEcCeEeccCCCceEEecCCCccccccccccccccc-cccccceeEEEEeecccccc
Q psy15128 212 SGETALLECGPPKGQPEPTLHWKKNGQFIDLESSKRVSILGDPWFDSRRSRSIFGSVL-GALSDDQWKLIAKNIRNQQQ 289 (292)
Q Consensus 212 ~g~~~~l~C~~~~~~p~~~~~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~-~~~~~g~y~C~a~n~~g~~~ 289 (292)
.|+.+.|.|.+ .|.|.|.++|+++|.++......++..... .|.|..+ ..+|+|.|+|.|+|.+|+..
T Consensus 18 ~g~~v~l~C~~-~G~P~P~i~W~k~g~~l~~~~~~~~~~~~g---------~L~i~~~~~~~D~G~Y~C~A~N~~G~~~ 86 (94)
T cd05848 18 DEKKVILNCEA-RGNPVPTYRWLRNGTEIDTESDYRYSLIDG---------NLIISNPSEVKDSGRYQCLATNSIGSIL 86 (94)
T ss_pred CCCEEEEEEEe-eecCCCEEEEEECCeECccCCCceEEeeCC---------eEEEccCCccCcCEEEEEEEEcCCCeEE
Confidence 47899999998 899999999999999886433334433322 4667665 46899999999999999874
No 56
>cd05737 Ig_Myomesin_like_C C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein. Ig_Myomesin_like_C: domain similar to the C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein. Myomesin and M-protein are both structural proteins localized to the M-band, a transverse structure in the center of the sarcomere, and are candidates for M-band bridges. Both proteins are modular, consisting mainly of repetitive Ig-like and fibronectin type III (FnIII) domains. Myomesin is expressed in all types of vertebrate striated muscle; M-protein has a muscle-type specific expression pattern. Myomesin is present in both slow and fast fibers; M-protein is present only in fast fibers. It has been suggested that myomesin acts as a molecular spring with alternative splicing as a means of modifying its elasticity.
Probab=99.58 E-value=4.1e-14 Score=89.57 Aligned_cols=82 Identities=23% Similarity=0.410 Sum_probs=63.5
Q ss_pred CCccEEecCCcEEEEEEEeeeCCCeeEEEECCeEEeeccCCCcceeEEe--eecEEEEccCCCCCCeEEEEEEEeCCcCe
Q psy15128 43 PQDQKVGLNGIASFQCVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVT--QEGTLRIQGVQKEDAGFFVCSALSVAGST 120 (292)
Q Consensus 43 ~~~~~~~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~--~~~~l~i~~~~~~d~g~Y~C~~~~~~~~~ 120 (292)
|....+.+|+++.|.|.+.|.|.|.+.|++++..+... ... ..... ....|.|.+++.+|+|.|+|.+.|..|..
T Consensus 8 p~~v~v~~G~~v~L~C~v~G~P~p~v~W~k~g~~l~~~--~~~-~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~ 84 (92)
T cd05737 8 PDVVTIMEGKTLNLTCTVFGDPDPEVSWLKNDQALALS--DHY-NVKVEQGKYASLTIKGVSSEDSGKYGIVVKNKYGGE 84 (92)
T ss_pred CceEEEeCCCcEEEEEEEEecCCCeEEEEECCEECccC--CCE-EEEEcCCCEEEEEEccCChhhCEEEEEEEEECCCcc
Confidence 44567889999999999999999999999998876321 111 11111 23479999999999999999999999987
Q ss_pred eEEEEEE
Q psy15128 121 TVRAFLQ 127 (292)
Q Consensus 121 ~~~~~l~ 127 (292)
.....+.
T Consensus 85 ~~~~~v~ 91 (92)
T cd05737 85 TVDVTVS 91 (92)
T ss_pred eEEEEEe
Confidence 7766554
No 57
>cd05723 Ig4_Neogenin Fourth immunoglobulin (Ig)-like domain in neogenin and similar proteins. Ig4_Neogenin: fourth immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.
Probab=99.58 E-value=3.9e-14 Score=84.92 Aligned_cols=70 Identities=31% Similarity=0.635 Sum_probs=56.6
Q ss_pred cEEEEEEEeeeCCCeeEEEECCeEEeeccCCCcceeEEeeecEEEEccCCCCCCeEEEEEEEeCCcCeeEEEEEE
Q psy15128 53 IASFQCVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQ 127 (292)
Q Consensus 53 ~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~~~~~~~~~l~ 127 (292)
++.|.|.+.|.|.|.+.|+|++..+. + ..+.....++.|.|.+++.+|+|.|+|.|.|..|.....+.|.
T Consensus 1 ~v~l~C~~~G~P~p~v~W~k~g~~~~--~---~~~~~~~~~~~l~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~L~ 70 (71)
T cd05723 1 DVIFECEVTGKPTPTVKWVKNGDMVI--P---SDYFKIVKEHNLQVLGLVKSDEGFYQCIAENDVGNVQASAQLI 70 (71)
T ss_pred CEEEEEEEEEeCCCEEEEEECCeECC--C---CCCEEEEecCCEEEEcCCcccCEEEEEEEEcCCCEEEEEEEEE
Confidence 47899999999999999999997653 1 1223344456789999999999999999999999887777664
No 58
>cd05893 Ig_Palladin_C C-terminal immunoglobulin (Ig)-like domain of palladin. Ig_Palladin_C: C-terminal immunoglobulin (Ig)-like domain of palladin. Palladin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to this family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Palladin binds to alpha-actinin ezrin, vasodilator-stimulated phosphoprotein VASP, SPIN90 (DIP, mDia interacting protein), and Src. Palladin also binds F-actin directly, via its Ig3 domain. Palladin is expressed as several alternatively spliced isoforms, having various combinations of Ig-like domains, in a cell-type-specific manner. It has been suggested that palladin's different Ig-like domains may be specialized for distinct functions.
Probab=99.58 E-value=2.6e-14 Score=86.16 Aligned_cols=71 Identities=34% Similarity=0.601 Sum_probs=55.7
Q ss_pred EEEEEEEeeeCCCeeEEEECCeEEeeccCCCcceeEEeeec----EEEEccCCCCCCeEEEEEEEeCCcCeeEEEEEEE
Q psy15128 54 ASFQCVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEG----TLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQV 128 (292)
Q Consensus 54 ~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~----~l~i~~~~~~d~g~Y~C~~~~~~~~~~~~~~l~v 128 (292)
+.|.|.+.|.|.|.+.|+|++..+... ..+....... .|.|.++..+|+|.|+|.|.|..|.....+.|.|
T Consensus 1 v~l~C~v~G~P~P~v~W~k~~~~l~~~----~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~a~L~V 75 (75)
T cd05893 1 VRLECRVSGVPHPQIFWKKENESLTHN----TDRVSMHQDNCGYICLLIQGATKEDAGWYTVSAKNEAGIVSCTARLDV 75 (75)
T ss_pred CEEEEEEeEecCCEEEEEECCEECCCC----CCeEEEEEcCCCEEEEEECCCCHHHCEEEEEEEEcCCCEEEEEEEEeC
Confidence 479999999999999999998876321 1223332221 6999999999999999999999998887777653
No 59
>cd05850 Ig1_Contactin-2 First Ig domain of contactin-2. Ig1_Contactin-2: First Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c
Probab=99.58 E-value=1.2e-14 Score=92.12 Aligned_cols=67 Identities=21% Similarity=0.343 Sum_probs=52.7
Q ss_pred CCceEEEeeCCCCCCCCeEEEeEcCeEeccCCCceEEecCCCccccccccccccccc-cccccceeEEEEeecccccc
Q psy15128 213 GETALLECGPPKGQPEPTLHWKKNGQFIDLESSKRVSILGDPWFDSRRSRSIFGSVL-GALSDDQWKLIAKNIRNQQQ 289 (292)
Q Consensus 213 g~~~~l~C~~~~~~p~~~~~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~-~~~~~g~y~C~a~n~~g~~~ 289 (292)
|+.+.|.|.+ .|.|.|.|+|+++|..+......++.+... .|.|..+ ...|+|.|+|+|+|.+|+..
T Consensus 19 g~~v~l~C~a-~g~P~p~i~W~~~g~~l~~~~~~~~~~~~g---------~L~I~~~~~~~D~G~Y~C~A~N~~G~~~ 86 (94)
T cd05850 19 EEKVTLGCRA-RASPPATYRWKMNGTEIKFAPESRYTLVAG---------NLVINNPQKARDAGSYQCLAINRCGTVV 86 (94)
T ss_pred CCeEEEEeEc-eeCCCCEEEEEECCEECccCCCceEEEECC---------eEEEccCCccCcCEEEEEEEEcCcCcEE
Confidence 4689999998 899999999999999986444444444322 4667654 46899999999999999864
No 60
>cd04969 Ig5_Contactin_like Fifth Ig domain of contactin. Ig5_Contactin_like: Fifth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week
Probab=99.58 E-value=5.6e-15 Score=89.27 Aligned_cols=68 Identities=25% Similarity=0.507 Sum_probs=56.2
Q ss_pred CCceEEEeeCCCCCCCCeEEEeEcCeEeccCCCceEEecCCCccccccccccccccccccccceeEEEEeecccccccC
Q psy15128 213 GETALLECGPPKGQPEPTLHWKKNGQFIDLESSKRVSILGDPWFDSRRSRSIFGSVLGALSDDQWKLIAKNIRNQQQHG 291 (292)
Q Consensus 213 g~~~~l~C~~~~~~p~~~~~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~a~n~~g~~~~~ 291 (292)
|+.+.|.|.+ .+.|.|.+.|++++..+. ...++.+..+ ..|.|..++.+|+|.|+|.|.|..|+.+.+
T Consensus 1 G~~v~L~C~~-~g~P~p~v~W~k~~~~~~--~~~~~~~~~~--------~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~ 68 (73)
T cd04969 1 GGDVIIECKP-KAAPKPTISWSKGTELLT--NSSRICIWPD--------GSLEILNVTKSDEGKYTCFAENFFGKANST 68 (73)
T ss_pred CCeEEEEEee-eEcCCCEEEEEECCEEcc--cCCCEEECCC--------CeEEEccCChhHCEEEEEEEECCCCceEEE
Confidence 6889999998 889999999999999875 3344444333 258899999999999999999999998754
No 61
>cd05744 Ig_Myotilin_C_like Immunoglobulin (Ig)-like domain of myotilin, palladin, and myopalladin. Ig_Myotilin_like_C: immunoglobulin (Ig)-like domain in myotilin, palladin, and myopalladin. Myotilin, palladin, and myopalladin function as scaffolds that regulate actin organization. Myotilin and myopalladin are most abundant in skeletal and cardiac muscle; palladin is ubiquitously expressed in the organs of developing vertebrates and plays a key role in cellular morphogenesis. The three family members each interact with specific molecular partners: all three bind to alpha-actinin; in addition, palladin also binds to vasodilator-stimulated phosphoprotein (VASP) and ezrin, myotilin binds to filamin and actin, and myopalladin also binds to nebulin and cardiac ankyrin repeat protein (CARP).
Probab=99.57 E-value=6.5e-15 Score=89.18 Aligned_cols=69 Identities=20% Similarity=0.334 Sum_probs=53.2
Q ss_pred eEEEeeCCCCCCCCeEEEeEcCeEeccCCCceEEecCCCccccccccccccccccccccceeEEEEeeccccccc
Q psy15128 216 ALLECGPPKGQPEPTLHWKKNGQFIDLESSKRVSILGDPWFDSRRSRSIFGSVLGALSDDQWKLIAKNIRNQQQH 290 (292)
Q Consensus 216 ~~l~C~~~~~~p~~~~~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~a~n~~g~~~~ 290 (292)
++|.|.+ .|.|.|.+.|+|+|+.+... ..++.+...+. ....|.|..+..+|+|.|+|.|.|.+|+++.
T Consensus 1 v~L~C~v-~G~P~P~v~W~k~~~~i~~~-~~r~~~~~~~~----~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~ 69 (75)
T cd05744 1 VRLECRV-SAIPPPQIFWKKNNEMLTYN-TDRISLYQDNC----GRICLLIQNANKEDAGWYTVSAVNEAGVVSC 69 (75)
T ss_pred CEEEEEE-eecCCCeEEEEECCEECCCC-CCcEEEEEcCC----CeEEEEECCCCcccCEEEEEEEEcCCCcEEE
Confidence 5799998 99999999999999988532 23443322211 1125889999999999999999999999864
No 62
>cd04973 Ig1_FGFR First immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Ig1_FGFR: The first immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for all FGFs.
Probab=99.57 E-value=9.1e-15 Score=89.62 Aligned_cols=73 Identities=12% Similarity=0.265 Sum_probs=58.3
Q ss_pred CcceEEeCCCceEEEeeCCCCCCCCeEEEeEcCeEeccCCCceEEecCCCccccccccccccccccccccceeEEEEeec
Q psy15128 205 PKDTRVASGETALLECGPPKGQPEPTLHWKKNGQFIDLESSKRVSILGDPWFDSRRSRSIFGSVLGALSDDQWKLIAKNI 284 (292)
Q Consensus 205 ~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~a~n~ 284 (292)
|....+.+|+.+.|.|.+ .+. .+.+.|+|+|.+|. .+.++.+..+ .|.|..+..+|+|.|+|.|.|.
T Consensus 1 ~~~~~~~~G~~v~l~C~~-~~~-~~~v~W~k~g~~l~--~~~~~~~~~~---------~L~I~~~~~~DsG~Y~C~a~n~ 67 (79)
T cd04973 1 VESYSAHPGDLLQLRCRL-RDD-VQSINWTKDGVQLG--ENNRTRITGE---------EVQIKDAVPRDSGLYACVTSSP 67 (79)
T ss_pred CCcEEecCCCCEEEEEEe-cCC-CceEEEeeCCcCCC--CCceEEEeCC---------EEEECCCChhhCEEEEEEEeCC
Confidence 346678899999999998 565 56899999999885 3334444322 5889999999999999999999
Q ss_pred cccccc
Q psy15128 285 RNQQQH 290 (292)
Q Consensus 285 ~g~~~~ 290 (292)
.|.++.
T Consensus 68 ~g~~~~ 73 (79)
T cd04973 68 SGSDTT 73 (79)
T ss_pred CCcccE
Confidence 998754
No 63
>cd05868 Ig4_NrCAM Fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule). Ig4_ NrCAM: fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six IG-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. NrCAM is primarily expressed in the nervous system.
Probab=99.57 E-value=6.7e-14 Score=85.02 Aligned_cols=75 Identities=24% Similarity=0.426 Sum_probs=60.1
Q ss_pred CCcEEEEEEEeeeCCCeeEEEECCeEEeeccCCCcceeEEeeecEEEEccCCCCCCeEEEEEEEeCCcCeeEEEEEEE
Q psy15128 51 NGIASFQCVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQV 128 (292)
Q Consensus 51 g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~~~~~~~~~l~v 128 (292)
|+.+.|.|.+.|.|.|.|.|++++..+...+. .... ....+.|.|.+++..|.|.|+|.|.|..|....++.|.|
T Consensus 1 g~~~~l~C~a~G~P~P~i~W~k~g~~i~~~~~--~~~~-~~~~~~l~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~v 75 (76)
T cd05868 1 GEDGTLICRANGNPKPSISWLTNGVPIEIAPT--DPSR-KVDGDTIIFSKVQERSSAVYQCNASNEYGYLLANAFVNV 75 (76)
T ss_pred CCCEEEEEEeeEeCCCeEEEEECCEEccccCC--CceE-EecCCEEEECCCCHhhCEEEEEEEEcCCCEEEEEEEEEe
Confidence 67899999999999999999999987642221 1111 223458999999999999999999999998888887765
No 64
>cd05735 Ig8_DSCAM Eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM). Ig8_DSCAM: the eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.
Probab=99.57 E-value=9.3e-15 Score=91.40 Aligned_cols=74 Identities=14% Similarity=0.116 Sum_probs=56.9
Q ss_pred CCceEEEeeCCCCCCCCeEEEeEcCeEeccCCCceEEecC--CCccccccccccccccccccccceeEEEEeeccccccc
Q psy15128 213 GETALLECGPPKGQPEPTLHWKKNGQFIDLESSKRVSILG--DPWFDSRRSRSIFGSVLGALSDDQWKLIAKNIRNQQQH 290 (292)
Q Consensus 213 g~~~~l~C~~~~~~p~~~~~W~~~g~~~~~~~~~~~~~~~--~~~~~~~~~~~l~i~~~~~~~~g~y~C~a~n~~g~~~~ 290 (292)
|+.++|.|.+ .|.|++.+.|+++++.+... ..++.+.. .+. .....|.|..+..+|+|.|+|.|.|..|.++.
T Consensus 1 g~~~~l~C~~-~g~p~~~i~W~k~~~~i~~~-~~r~~~~~~~~~~---~~~s~L~I~~~~~~D~G~YtC~A~N~~G~~~~ 75 (88)
T cd05735 1 GQKKEMSCTA-HGEKPIIVRWEKEDRIINPE-MSRYLVSTKEVGD---EVISTLQILPTVREDSGFFSCHAINSYGEDRG 75 (88)
T ss_pred CCeEEEEEEE-ECCCCCEEEEeeCCEECCCC-CCcEEEEEecCCC---cEEEEEEECCCCcccCEEEEEEEEcCCCcceE
Confidence 7899999998 88999999999999887532 23433321 111 12346889999999999999999999999875
Q ss_pred C
Q psy15128 291 G 291 (292)
Q Consensus 291 ~ 291 (292)
+
T Consensus 76 ~ 76 (88)
T cd05735 76 I 76 (88)
T ss_pred E
Confidence 3
No 65
>cd05726 Ig4_Robo Fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Ig4_Robo: domain similar to the fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni
Probab=99.57 E-value=5.7e-14 Score=88.60 Aligned_cols=81 Identities=43% Similarity=0.853 Sum_probs=63.8
Q ss_pred CCcEEEEEEEeeeCCCeeEEEECCeEEeeccC---CCcceeEEeeecEEEEccCCCCCCeEEEEEEEeCCcCeeEEEEEE
Q psy15128 51 NGIASFQCVAEGSPLPSVFWTQEGSQVLMFPG---NAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQ 127 (292)
Q Consensus 51 g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~---~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~~~~~~~~~l~ 127 (292)
|+.+.|.|.+.+.|.|.+.|++++........ ....+......+.|.|.+++.+|+|.|+|.+.|..|.....+.|.
T Consensus 1 G~~v~L~C~~~g~P~p~v~W~k~g~~~~~~~~~~~~~~~r~~v~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~ 80 (90)
T cd05726 1 GRTVTFQCEATGNPQPAIFWQKEGSQNLLFSYQPPQSSSRFSVSQTGDLTITNVQRSDVGYYICQTLNVAGSILTKAYLE 80 (90)
T ss_pred CCEEEEEEECCccCCCEEEEEeCCCcceeecccCCCCCCeEEECCCCeEEEeeCChhhCEEEEEEEEcCCCceEEEEEEE
Confidence 67899999999999999999998865432111 122344444466899999999999999999999999988888888
Q ss_pred EEee
Q psy15128 128 VTSV 131 (292)
Q Consensus 128 v~~~ 131 (292)
|...
T Consensus 81 V~~~ 84 (90)
T cd05726 81 VTDV 84 (90)
T ss_pred Eeec
Confidence 8753
No 66
>cd04969 Ig5_Contactin_like Fifth Ig domain of contactin. Ig5_Contactin_like: Fifth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week
Probab=99.57 E-value=4.4e-14 Score=85.33 Aligned_cols=73 Identities=23% Similarity=0.471 Sum_probs=59.7
Q ss_pred CCcEEEEEEEeeeCCCeeEEEECCeEEeeccCCCcceeEEeeecEEEEccCCCCCCeEEEEEEEeCCcCeeEEEEEEE
Q psy15128 51 NGIASFQCVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQV 128 (292)
Q Consensus 51 g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~~~~~~~~~l~v 128 (292)
|+.+.|.|.+.+.|.+.+.|++++..+. ...+.....++.|.|.+++.+|+|.|+|.+.|..|.....+.|.|
T Consensus 1 G~~v~L~C~~~g~P~p~v~W~k~~~~~~-----~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V 73 (73)
T cd04969 1 GGDVIIECKPKAAPKPTISWSKGTELLT-----NSSRICIWPDGSLEILNVTKSDEGKYTCFAENFFGKANSTGSLSV 73 (73)
T ss_pred CCeEEEEEeeeEcCCCEEEEEECCEEcc-----cCCCEEECCCCeEEEccCChhHCEEEEEEEECCCCceEEEEEEEC
Confidence 6789999999999999999999998753 122333445568999999999999999999999998877776643
No 67
>cd05748 Ig_Titin_like Immunoglobulin (Ig)-like domain of titin and similar proteins. Ig_Titin_like: immunoglobulin (Ig)-like domain found in titin-like proteins. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic, depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone. It appears to function similarly to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching. Within the sarcomere, titin is also attached to or is associated with myosin binding protein C (MyBP-C). MyBP-C appears to contribute to the generation of passive tension by titin, and similar to titin has repeated Ig-like and FN-
Probab=99.57 E-value=7.8e-15 Score=89.00 Aligned_cols=69 Identities=26% Similarity=0.366 Sum_probs=54.2
Q ss_pred ceEEEeeCCCCCCCCeEEEeEcCeEeccCCCceEEecCCCccccccccccccccccccccceeEEEEeecccccccC
Q psy15128 215 TALLECGPPKGQPEPTLHWKKNGQFIDLESSKRVSILGDPWFDSRRSRSIFGSVLGALSDDQWKLIAKNIRNQQQHG 291 (292)
Q Consensus 215 ~~~l~C~~~~~~p~~~~~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~a~n~~g~~~~~ 291 (292)
.+.|.|.+ .|.|.|.+.|+++|..+. .+.++.+.... ....|.|..+...|+|.|+|.|.|..|+++.+
T Consensus 1 ~~~l~c~~-~G~P~p~v~W~k~g~~l~--~~~~~~~~~~~-----~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~ 69 (74)
T cd05748 1 SVRLEVPI-SGRPTPTVTWSKDGKPLK--LSGRVQIETTA-----SSTSLVIKNAERSDSGKYTLTLKNPAGEKSAT 69 (74)
T ss_pred CEEEEeeE-eeeCCCeEEEEECCEEcC--CCCeEEEEECC-----CeEEEEECCCCcCcCEEEEEEEECCCccEEEE
Confidence 37899998 999999999999999884 33343332221 12368899999999999999999999998653
No 68
>cd04972 Ig_TrkABC_d4 Fourth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC. TrkABC_d4: the fourth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor fo
Probab=99.57 E-value=7.8e-14 Score=87.98 Aligned_cols=84 Identities=26% Similarity=0.391 Sum_probs=64.3
Q ss_pred CCCccEEecCCcEEEEEEEeeeCCCeeEEEECCeEEeeccCCCcceeEEeeecEEEEccCCCCCCeEEEEEEEeCCcCee
Q psy15128 42 RPQDQKVGLNGIASFQCVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTT 121 (292)
Q Consensus 42 ~~~~~~~~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~~~~~ 121 (292)
.+....+.+|+.+.|.|.+.|.|.|.+.|++++..+... .............|.|.++..+|.|.|+|.|.|..|...
T Consensus 6 ~p~~~~v~~G~~v~l~C~~~G~P~p~v~W~~~g~~~~~~--~~~~~~~~~~~~~L~I~~v~~~D~g~Y~C~A~N~~G~~~ 83 (90)
T cd04972 6 GPNATVVYEGGTATIRCTAEGSPLPKVEWIIAGLIVIQT--RTDTLETTVDIYNLQLSNITSETQTTVTCTAENPVGQAN 83 (90)
T ss_pred CCcCEEEcCCCcEEEEEEEEEcCCCeEEEEECCEEccCC--ccEEEEecCCEEEEEEecCCcccCEEEEEEEECCCCcee
Confidence 344556889999999999999999999999999865311 111111122345899999999999999999999999877
Q ss_pred EEEEEE
Q psy15128 122 VRAFLQ 127 (292)
Q Consensus 122 ~~~~l~ 127 (292)
..+.|.
T Consensus 84 ~~~~L~ 89 (90)
T cd04972 84 VSVQVT 89 (90)
T ss_pred EEEEEe
Confidence 776664
No 69
>cd05857 Ig2_FGFR Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. Ig2_FGFR: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three IG-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin sulfate proteoglycans.
Probab=99.57 E-value=1.4e-14 Score=90.55 Aligned_cols=77 Identities=19% Similarity=0.333 Sum_probs=58.9
Q ss_pred ceEEeCCCceEEEeeCCCCCCCCeEEEeEcCeEeccCCCc-eEEecCCCccccccccccccccccccccceeEEEEeecc
Q psy15128 207 DTRVASGETALLECGPPKGQPEPTLHWKKNGQFIDLESSK-RVSILGDPWFDSRRSRSIFGSVLGALSDDQWKLIAKNIR 285 (292)
Q Consensus 207 ~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~g~~~~~~~~~-~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~a~n~~ 285 (292)
...+.+|+.+.|.|.+ .|.|.|.+.|+++|..+...... .+.... ....|.|..+..+|+|.|+|.|.|..
T Consensus 3 ~~~v~~G~~~~L~C~~-~g~P~p~i~W~k~g~~l~~~~~~~~~~~~~-------~~~~l~i~~~~~~D~G~Y~C~a~N~~ 74 (85)
T cd05857 3 LHAVPAANTVKFRCPA-AGNPTPTMRWLKNGKEFKQEHRIGGYKVRN-------QHWSLIMESVVPSDKGNYTCVVENEY 74 (85)
T ss_pred cEEcCCCCEEEEEEEc-CCCCCCEEEEEECCEECCCCCceeeeEEeC-------CceEEEEccCCcccCEEEEEEEEeCC
Confidence 3467889999999998 88999999999999988532211 111111 12257788899999999999999999
Q ss_pred cccccC
Q psy15128 286 NQQQHG 291 (292)
Q Consensus 286 g~~~~~ 291 (292)
|+..++
T Consensus 75 G~~~~~ 80 (85)
T cd05857 75 GSINHT 80 (85)
T ss_pred CEEEEE
Confidence 998653
No 70
>cd04978 Ig4_L1-NrCAM_like Fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related). Ig4_L1-NrCAM_like: fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related). These proteins belong to the L1 subfamily of cell adhesion molecules (CAMs) and are comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. These molecules are primarily expressed in the nervous system. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.
Probab=99.57 E-value=1e-14 Score=89.19 Aligned_cols=69 Identities=23% Similarity=0.378 Sum_probs=54.6
Q ss_pred CCceEEEeeCCCCCCCCeEEEeEcCeEeccCCCceEEecCCCccccccccccccccccccccceeEEEEeeccccccc
Q psy15128 213 GETALLECGPPKGQPEPTLHWKKNGQFIDLESSKRVSILGDPWFDSRRSRSIFGSVLGALSDDQWKLIAKNIRNQQQH 290 (292)
Q Consensus 213 g~~~~l~C~~~~~~p~~~~~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~a~n~~g~~~~ 290 (292)
|+.+.|.|.+ .|.|.|.+.|+++|.++........... ....|.|..+..+|+|.|+|.|.|..|....
T Consensus 1 G~~~~l~C~~-~g~P~p~i~W~~~g~~~~~~~~~~~~~~--------~~~~L~i~~v~~~D~G~Y~C~A~N~~G~~~~ 69 (76)
T cd04978 1 GETGRLDCEA-EGIPQPTITWRLNGVPIEELPPDPRRRV--------DGGTLILSNVQPNDTAVYQCNASNVHGYLLA 69 (76)
T ss_pred CCeEEEEEEc-eeeCCCEEEEEECCEECCCCCCcceEEc--------cCCEEEECCCChhhCEEEEEEEEccCCeEEE
Confidence 7889999998 8999999999999998853332211111 1236889999999999999999999999764
No 71
>cd05758 Ig5_KIRREL3-like Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2) and similar proteins. Ig5_KIRREL3-like: domain similar to the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.
Probab=99.56 E-value=1.6e-14 Score=92.61 Aligned_cols=83 Identities=17% Similarity=0.148 Sum_probs=62.9
Q ss_pred cceEEeCCCceEEEeeCCCCCCCC-eEEEeEcCeEeccCCCceEEecCCCccccccccccccccccccc-cceeEEEEee
Q psy15128 206 KDTRVASGETALLECGPPKGQPEP-TLHWKKNGQFIDLESSKRVSILGDPWFDSRRSRSIFGSVLGALS-DDQWKLIAKN 283 (292)
Q Consensus 206 ~~~~~~~g~~~~l~C~~~~~~p~~-~~~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~-~g~y~C~a~n 283 (292)
....+.+|+.+.|.|.+ .|.|.| .+.|++++..+......++.+...... ......|.|..+..+| .|.|.|.|.|
T Consensus 9 ~~~~~~~G~~v~L~C~~-~g~P~P~~v~W~~~~~~i~~~~~~r~~i~~~~~~-~~~~s~L~I~~v~~~d~~G~Y~C~A~N 86 (98)
T cd05758 9 ATQYAILGDKGRVECFI-FSTPPPDRIVWTWKENELESGSSGRYTVETDPSP-GGVLSTLTISNTQESDFQTSYNCTAWN 86 (98)
T ss_pred CcEEEeCCCcEEEEEEE-cccCCCCEeEEEECCEEccCCCCCCEEEEEecCC-CceEEEEEECCccccccceeEEEEEEc
Confidence 45567899999999999 898988 699999999886544445554433211 1223468899999855 8999999999
Q ss_pred ccccccc
Q psy15128 284 IRNQQQH 290 (292)
Q Consensus 284 ~~g~~~~ 290 (292)
..|.+..
T Consensus 87 ~~G~~~~ 93 (98)
T cd05758 87 SFGSGTA 93 (98)
T ss_pred CCCcccE
Confidence 9999764
No 72
>cd07693 Ig1_Robo First immunoglobulin (Ig)-like domain in Robo (roundabout) receptors and similar proteins. Ig1_Robo: domain similar to the first immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit res
Probab=99.56 E-value=6.3e-14 Score=90.77 Aligned_cols=93 Identities=31% Similarity=0.554 Sum_probs=64.9
Q ss_pred CCcEEeCCCccEEecCCcEEEEEEEeeeCCCeeEEEECCeEEeeccCCCcceeEEeeecEE---EE--ccCCCCCCeEEE
Q psy15128 36 PPSFVVRPQDQKVGLNGIASFQCVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTL---RI--QGVQKEDAGFFV 110 (292)
Q Consensus 36 ~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l---~i--~~~~~~d~g~Y~ 110 (292)
+|.+...+....+.+|+.+.|.|.+.|.|.|.+.|+|++..+...............++.+ .+ ..+..+|+|.|+
T Consensus 1 ~P~i~~~p~~~~v~~G~~~~l~C~~~g~P~p~i~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~D~G~Y~ 80 (100)
T cd07693 1 PPRIVEHPSDLIVSKGDPATLNCKAEGRPTPTIQWLKNGQPLETDKDDPRSHRIVLPSGSLFFLRVVHGRKGRSDEGVYV 80 (100)
T ss_pred CCeEEecCceeEEcCCCeEEEEeeCCcCCCCEEEEEECCEECccccCCCCcceEEecCCcEEEEEeeccCCCcCcCEEEE
Confidence 4677778888899999999999999999999999999998764311111111112222222 22 234689999999
Q ss_pred EEEEeCCcC-eeEEEEEEE
Q psy15128 111 CSALSVAGS-TTVRAFLQV 128 (292)
Q Consensus 111 C~~~~~~~~-~~~~~~l~v 128 (292)
|.+.|..|. ....+.|.|
T Consensus 81 C~a~N~~G~~~s~~~~l~v 99 (100)
T cd07693 81 CVAHNSLGEAVSRNASLEV 99 (100)
T ss_pred EEEEccccceecceEEEEe
Confidence 999999987 455555544
No 73
>cd05732 Ig5_NCAM-1_like Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM) and similar proteins. Ig5_NCAM-1 like: domain similar to the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM mole
Probab=99.56 E-value=8.5e-14 Score=89.20 Aligned_cols=91 Identities=23% Similarity=0.399 Sum_probs=66.0
Q ss_pred CCcEEeCCCccEEecCCcEEEEEEEeeeCCCeeEEEECCeEEeeccCCCcceeEE---eeecEEEEccCCCCCCeEEEEE
Q psy15128 36 PPSFVVRPQDQKVGLNGIASFQCVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHV---TQEGTLRIQGVQKEDAGFFVCS 112 (292)
Q Consensus 36 ~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~---~~~~~l~i~~~~~~d~g~Y~C~ 112 (292)
+|.+. .+.+..+.+|+.+.|.|.+.|.|.|.+.|++++..+.........+... ...+.|.|.+++.+|+|.|+|.
T Consensus 2 ~P~i~-~~~~~~~~~g~~v~l~C~~~g~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~ 80 (96)
T cd05732 2 QPKIT-YLENQTAVELEQITLTCEAEGDPIPEITWRRATRNFSEGDKSLDGRIVVRGHARVSSLTLKDVQLTDAGRYDCE 80 (96)
T ss_pred Cccce-ecCceeEecCCcEEEEEEEeEcCCCcEEEEECCcccCCCCccccceEEEeCCccEEEEEECcCCcCcCEEeEEE
Confidence 34443 3456778899999999999999999999999875432111111112222 1235899999999999999999
Q ss_pred EEeCCcCeeEEEEEE
Q psy15128 113 ALSVAGSTTVRAFLQ 127 (292)
Q Consensus 113 ~~~~~~~~~~~~~l~ 127 (292)
+.|..|.....+.|.
T Consensus 81 a~N~~G~~~~s~~l~ 95 (96)
T cd05732 81 ASNRIGGDQQSMYLE 95 (96)
T ss_pred EEeCCCCcEEEEEEe
Confidence 999999887766654
No 74
>cd05735 Ig8_DSCAM Eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM). Ig8_DSCAM: the eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.
Probab=99.56 E-value=6e-14 Score=87.73 Aligned_cols=76 Identities=26% Similarity=0.353 Sum_probs=60.7
Q ss_pred CCcEEEEEEEeeeCCCeeEEEECCeEEeeccCCCcceeEEe-------eecEEEEccCCCCCCeEEEEEEEeCCcCeeEE
Q psy15128 51 NGIASFQCVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVT-------QEGTLRIQGVQKEDAGFFVCSALSVAGSTTVR 123 (292)
Q Consensus 51 g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~-------~~~~l~i~~~~~~d~g~Y~C~~~~~~~~~~~~ 123 (292)
|+.++|.|.+.|.|.+.+.|++++..+... . .+.... ..+.|.|.++..+|+|.|+|.|.|..|.....
T Consensus 1 g~~~~l~C~~~g~p~~~i~W~k~~~~i~~~--~--~r~~~~~~~~~~~~~s~L~I~~~~~~D~G~YtC~A~N~~G~~~~~ 76 (88)
T cd05735 1 GQKKEMSCTAHGEKPIIVRWEKEDRIINPE--M--SRYLVSTKEVGDEVISTLQILPTVREDSGFFSCHAINSYGEDRGI 76 (88)
T ss_pred CCeEEEEEEEECCCCCEEEEeeCCEECCCC--C--CcEEEEEecCCCcEEEEEEECCCCcccCEEEEEEEEcCCCcceEE
Confidence 788999999999999999999998755211 1 122111 12579999999999999999999999999888
Q ss_pred EEEEEEe
Q psy15128 124 AFLQVTS 130 (292)
Q Consensus 124 ~~l~v~~ 130 (292)
+.|.|..
T Consensus 77 ~~L~V~~ 83 (88)
T cd05735 77 IQLTVQE 83 (88)
T ss_pred EEEEEeC
Confidence 8888864
No 75
>cd05866 Ig1_NCAM-2 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2. Ig1_NCAM-2: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2 (OCAM/mamFas II, RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.
Probab=99.56 E-value=8.1e-15 Score=91.87 Aligned_cols=76 Identities=21% Similarity=0.358 Sum_probs=59.4
Q ss_pred CcceEEeCCCceEEEeeCCCCCCCCeEEEeE-cCeEeccCCCceEEecCCCccccccccccccccccccccceeEEEEee
Q psy15128 205 PKDTRVASGETALLECGPPKGQPEPTLHWKK-NGQFIDLESSKRVSILGDPWFDSRRSRSIFGSVLGALSDDQWKLIAKN 283 (292)
Q Consensus 205 ~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~a~n 283 (292)
+.+..+.+|+.+.|.|.+ .|.|. .+.|++ +|.++. .+.++.+..++. ...|.|..+..+|+|.|+|.|+|
T Consensus 7 ~~~~~v~~G~~v~l~C~~-~G~P~-~v~W~k~~g~~~~--~~~r~~~~~~g~-----~~~L~I~~v~~~D~G~Y~C~A~N 77 (92)
T cd05866 7 LSKVELSVGESKFFTCTA-IGEPE-SIDWYNPQGEKIV--SSQRVVVQKEGV-----RSRLTIYNANIEDAGIYRCQATD 77 (92)
T ss_pred ecceEEcCCCeEEEEEEE-EEeCC-eEEEEeCCCeEec--CCCCEEEEeCCC-----eeEEEEecCChHHCEEEEEEEEc
Confidence 346678899999999998 88888 899998 476664 334554433321 22688999999999999999999
Q ss_pred cccccc
Q psy15128 284 IRNQQQ 289 (292)
Q Consensus 284 ~~g~~~ 289 (292)
..|...
T Consensus 78 ~~G~~~ 83 (92)
T cd05866 78 AKGQTQ 83 (92)
T ss_pred CCCcEE
Confidence 999864
No 76
>cd05740 Ig_CEACAM_D4 Fourth immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM). Ig_CEACAM_D4: immunoglobulin (Ig)-like domain 4 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the
Probab=99.56 E-value=1.7e-14 Score=90.61 Aligned_cols=72 Identities=17% Similarity=0.305 Sum_probs=57.9
Q ss_pred cceEEeCCCceEEEeeCCCCCCCCeEEEeEcCeEeccCCCceEEecCCCccccccccccccccccccccceeEEEEeecc
Q psy15128 206 KDTRVASGETALLECGPPKGQPEPTLHWKKNGQFIDLESSKRVSILGDPWFDSRRSRSIFGSVLGALSDDQWKLIAKNIR 285 (292)
Q Consensus 206 ~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~a~n~~ 285 (292)
....+.+|++++|.|.+ .|. .|.+.|++++.++.. .++.+..+ ...|.|..+..+|+|.|+|.|.|..
T Consensus 11 ~~~~v~~g~~v~l~C~a-~g~-~p~i~W~kng~~l~~---~~~~~~~~-------~~~L~I~~v~~~D~G~Y~C~a~N~~ 78 (91)
T cd05740 11 GNQPPEDNQPVTLTCEA-EGQ-ATYIWWVNNGSLLVP---PRLQLSND-------NRTLTFNNVTRSDTGHYQCEASNEV 78 (91)
T ss_pred CccccccCCcEEEEEEe-CCC-CCEEEEEECCEECCC---CCEEEeCC-------CCEEEECcCChhhCEEEEEEEEcCC
Confidence 35678899999999998 788 899999999988742 23333222 1268899999999999999999999
Q ss_pred cccc
Q psy15128 286 NQQQ 289 (292)
Q Consensus 286 g~~~ 289 (292)
|...
T Consensus 79 G~~~ 82 (91)
T cd05740 79 SNMT 82 (91)
T ss_pred CCEE
Confidence 9753
No 77
>cd05739 Ig3_RPTP_IIa_LAR_like Third immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. Ig3_RPTP_IIa_LAR_like: domain similar to the third immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple IG-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains. Included in this group is Drosophila LAR (DLAR).
Probab=99.56 E-value=1.2e-14 Score=86.29 Aligned_cols=65 Identities=17% Similarity=0.342 Sum_probs=48.8
Q ss_pred CCceEEEeeCCCCCCCCeEEEeEcCeEeccCCCceEEecCCCccccccccccccccccccccceeEEEEeecccccccC
Q psy15128 213 GETALLECGPPKGQPEPTLHWKKNGQFIDLESSKRVSILGDPWFDSRRSRSIFGSVLGALSDDQWKLIAKNIRNQQQHG 291 (292)
Q Consensus 213 g~~~~l~C~~~~~~p~~~~~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~a~n~~g~~~~~ 291 (292)
|+.++|.|.+ .|.|.|.|.|+++|+++.. ..+... .. ..|.|..+ .|+|.|+|.|.|.+|....+
T Consensus 1 G~~v~L~C~a-~G~P~P~v~W~k~g~~l~~--~~~~~~-~~--------~~L~i~~~--~d~G~Y~C~A~N~~G~~~~~ 65 (69)
T cd05739 1 GGSVNLTCVA-VGAPMPYVKWMKGGEELTK--EDEMPV-GR--------NVLELTNI--YESANYTCVAISSLGMIEAT 65 (69)
T ss_pred CCeEEEEEEe-eecCCCEEEEEECCEECCC--ccceec-Cc--------cEEEEecc--ccCeeEEEEEEeCCCEEEEE
Confidence 6789999999 8999999999999988742 222211 11 13555554 47999999999999987653
No 78
>cd05760 Ig2_PTK7 Second immunoglobulin (Ig)-like domain of protein tyrosine kinase (PTK) 7, also known as CCK4. Ig2_PTK7: domain similar to the second immunoglobulin (Ig)-like domain in protein tyrosine kinase (PTK) 7, also known as CCK4. PTK7 is a subfamily of the receptor protein tyrosine kinase family, and is referred to as an RPTK-like molecule. RPTKs transduce extracellular signals across the cell membrane, and play important roles in regulating cell proliferation, migration, and differentiation. PTK7 is organized as an extracellular portion having seven Ig-like domains, a single transmembrane region, and a cytoplasmic tyrosine kinase-like domain. PTK7 is considered a pseudokinase as it has several unusual residues in some of the highly conserved tyrosine kinase (TK) motifs; it is predicted to lack TK activity. PTK7 may function as a cell-adhesion molecule. PTK7 mRNA is expressed at high levels in placenta, melanocytes, liver, lung, pancreas, and kidney. PTK7 is overexpressed in s
Probab=99.55 E-value=1.4e-14 Score=88.38 Aligned_cols=65 Identities=20% Similarity=0.306 Sum_probs=51.0
Q ss_pred eEEEeeCCCCCCCCeEEEeEcCeEeccCCCceEEecCCCccccccccccccccccccccceeEEEEeecccccc
Q psy15128 216 ALLECGPPKGQPEPTLHWKKNGQFIDLESSKRVSILGDPWFDSRRSRSIFGSVLGALSDDQWKLIAKNIRNQQQ 289 (292)
Q Consensus 216 ~~l~C~~~~~~p~~~~~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~a~n~~g~~~ 289 (292)
++|.|.+ .|.|.|.+.|+|+|.++.... .++.+... ...|.|..+..+|+|.|.|.|.|.+|+..
T Consensus 1 v~L~C~~-~g~P~p~v~W~k~g~~l~~~~-~~~~~~~~-------~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~ 65 (77)
T cd05760 1 VTLRCHI-DGHPRPTYQWFRDGTPLSDGQ-GNYSVSSK-------ERTLTLRSAGPDDSGLYYCCAHNAFGSVC 65 (77)
T ss_pred CEEEEEe-eecCCCcEEEEECCEECCCCC-ccEEEeCC-------CCEEEEeeCCcccCEEEEEEEEeCCCeEe
Confidence 5799998 899999999999999885322 22222221 12688999999999999999999999864
No 79
>cd05859 Ig4_PDGFR-alpha Fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha. IG4_PDGFR-alpha: The fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha. PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFR alpha binds to all three PDGFs, whereas the PDGFR beta (not included in this group) binds only to PDGF-B. PDGF alpha is organized as an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFR alpha and PDGFR beta are essential for normal development.
Probab=99.55 E-value=6.1e-14 Score=89.74 Aligned_cols=85 Identities=15% Similarity=0.248 Sum_probs=64.2
Q ss_pred ccEEecCCcEEEEEEEeeeCCCeeEEEECCeEEeeccCCCcc-e---eEEeeecEEEEccCCCCCCeEEEEEEEeCCcCe
Q psy15128 45 DQKVGLNGIASFQCVAEGSPLPSVFWTQEGSQVLMFPGNAYG-H---LHVTQEGTLRIQGVQKEDAGFFVCSALSVAGST 120 (292)
Q Consensus 45 ~~~~~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~-~---~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~~~~ 120 (292)
...+..|+.+.|.|.+.|+|.|.+.|+|++..+......... . ......+.|.|.++..+|+|.|+|.|.|..|..
T Consensus 12 ~~~~~~~~~~~l~~~v~g~P~P~v~W~kdg~~l~~~~~~~~~~~~~~~~~~~~s~L~I~~v~~~D~G~Ytc~A~N~~g~~ 91 (101)
T cd05859 12 LEFANLHEVKEFVVEVEAYPPPQIRWLKDNRTLIENLTEITTSEHNVQETRYVSKLKLIRAKEEDSGLYTALAQNEDAVK 91 (101)
T ss_pred eEEEecCCcEEEEEEEEEeCCCceEEEECCEECcCCcceEEeccccccceeeccEEEEeeCCHHHCEEEEEEEEcCCceE
Confidence 456778999999999999999999999999876421110000 0 001123589999999999999999999999888
Q ss_pred eEEEEEEEE
Q psy15128 121 TVRAFLQVT 129 (292)
Q Consensus 121 ~~~~~l~v~ 129 (292)
..++.|.|.
T Consensus 92 ~~t~~l~V~ 100 (101)
T cd05859 92 SYTFALQIQ 100 (101)
T ss_pred EEEEEEEEE
Confidence 777777664
No 80
>cd05864 Ig2_VEGFR-2 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2). Ig2_VEGF-2: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-2 (KDR/Flk-1) is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF-A also interacts with VEGFR-1, which it binds more strongly than VEGFR-2. VEGFR-2 and -1 may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.
Probab=99.55 E-value=6.1e-14 Score=83.11 Aligned_cols=69 Identities=20% Similarity=0.287 Sum_probs=55.6
Q ss_pred EEEEEEEeeeCCCeeEEEECCeEEeeccCCCcceeEEeeecEEEEccCCCCCCeEEEEEEEeCCcCeeEEEEEEEE
Q psy15128 54 ASFQCVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVT 129 (292)
Q Consensus 54 ~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~~~~~~~~~l~v~ 129 (292)
+.|.|.+.|.|.|.+.|+|++..+... ........|.|.++..+|+|.|+|.+.|..|......++.+.
T Consensus 1 ~~~~c~v~G~P~P~v~W~k~g~~l~~~-------~~~~~~~~L~I~~v~~~D~G~YtC~a~N~~G~~~~~~t~~l~ 69 (70)
T cd05864 1 VKIPVKYYGYPPPEVKWYKNGQLIVLN-------HTFKRGVHLTIYEVTEKDAGNYTVVLTNPITKEEQRHTFQLV 69 (70)
T ss_pred CEEEeEEEEeCCCEEEEEECCEECCCC-------CEEccCCEEEECcCCHHHCEEEEEEEEECCCceeeEEEEEEE
Confidence 368999999999999999999876311 112234589999999999999999999999987777666653
No 81
>cd04976 Ig2_VEGFR Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR). Ig2_VEGFR: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A. VEGFR-1 may play an inhibitory part in these processes by binding VEGF and interfering with its interaction with VEGFR-2. VEGFR-1 has a signa
Probab=99.55 E-value=6.7e-15 Score=88.08 Aligned_cols=63 Identities=19% Similarity=0.325 Sum_probs=50.8
Q ss_pred eEEEeeCCCCCCCCeEEEeEcCeEeccCCCceEEecCCCccccccccccccccccccccceeEEEEeeccccccc
Q psy15128 216 ALLECGPPKGQPEPTLHWKKNGQFIDLESSKRVSILGDPWFDSRRSRSIFGSVLGALSDDQWKLIAKNIRNQQQH 290 (292)
Q Consensus 216 ~~l~C~~~~~~p~~~~~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~a~n~~g~~~~ 290 (292)
+.|.|.+ .|.|+|.+.|+|+|+++... .+.... ...|.|..+..+|+|.|+|.|.|..|..++
T Consensus 1 ~~l~c~v-~g~P~p~v~W~k~g~~l~~~--~~~~~~---------~~~L~I~~v~~~D~G~YtC~a~N~~g~~~~ 63 (71)
T cd04976 1 VRLPVKV-KAYPPPEIQWYKNGKLISEK--NRTKKS---------GHSLTIKDVTEEDAGNYTVVLTNKQAKLEK 63 (71)
T ss_pred CEEEeEE-EEeCCCEEEEEECCEECCCC--CEEEcC---------CCEEEECcCCHHHCEEEEEEEEcCCccEEE
Confidence 5799998 89999999999999998532 333221 126889999999999999999999997643
No 82
>cd04978 Ig4_L1-NrCAM_like Fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related). Ig4_L1-NrCAM_like: fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related). These proteins belong to the L1 subfamily of cell adhesion molecules (CAMs) and are comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. These molecules are primarily expressed in the nervous system. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.
Probab=99.55 E-value=8.3e-14 Score=85.10 Aligned_cols=75 Identities=29% Similarity=0.559 Sum_probs=60.3
Q ss_pred CCcEEEEEEEeeeCCCeeEEEECCeEEeeccCCCcceeEEeeecEEEEccCCCCCCeEEEEEEEeCCcCeeEEEEEEE
Q psy15128 51 NGIASFQCVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQV 128 (292)
Q Consensus 51 g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~~~~~~~~~l~v 128 (292)
|+.+.|.|.+.|.|.|.+.|++++..+...... .........|.|.+++.+|+|.|+|.|.|..|.....+.|.|
T Consensus 1 G~~~~l~C~~~g~P~p~i~W~~~g~~~~~~~~~---~~~~~~~~~L~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~V 75 (76)
T cd04978 1 GETGRLDCEAEGIPQPTITWRLNGVPIEELPPD---PRRRVDGGTLILSNVQPNDTAVYQCNASNVHGYLLANAFVHV 75 (76)
T ss_pred CCeEEEEEEceeeCCCEEEEEECCEECCCCCCc---ceEEccCCEEEECCCChhhCEEEEEEEEccCCeEEEeEEEEE
Confidence 678999999999999999999999876422211 123344578999999999999999999999998877777665
No 83
>cd05864 Ig2_VEGFR-2 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2). Ig2_VEGF-2: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-2 (KDR/Flk-1) is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF-A also interacts with VEGFR-1, which it binds more strongly than VEGFR-2. VEGFR-2 and -1 may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.
Probab=99.55 E-value=7.1e-15 Score=87.13 Aligned_cols=62 Identities=19% Similarity=0.318 Sum_probs=50.0
Q ss_pred eEEEeeCCCCCCCCeEEEeEcCeEeccCCCceEEecCCCccccccccccccccccccccceeEEEEeeccccccc
Q psy15128 216 ALLECGPPKGQPEPTLHWKKNGQFIDLESSKRVSILGDPWFDSRRSRSIFGSVLGALSDDQWKLIAKNIRNQQQH 290 (292)
Q Consensus 216 ~~l~C~~~~~~p~~~~~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~a~n~~g~~~~ 290 (292)
+.|.|.+ .|.|.|.+.|+|+|+++.. ..++ . ....|.|..+..+|+|.|+|.|.|..|+.+.
T Consensus 1 ~~~~c~v-~G~P~P~v~W~k~g~~l~~--~~~~--~--------~~~~L~I~~v~~~D~G~YtC~a~N~~G~~~~ 62 (70)
T cd05864 1 VKIPVKY-YGYPPPEVKWYKNGQLIVL--NHTF--K--------RGVHLTIYEVTEKDAGNYTVVLTNPITKEEQ 62 (70)
T ss_pred CEEEeEE-EEeCCCEEEEEECCEECCC--CCEE--c--------cCCEEEECcCCHHHCEEEEEEEEECCCceee
Confidence 4789998 9999999999999999852 2222 1 1125889999999999999999999997653
No 84
>cd05743 Ig_Perlecan_D2_like Immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2. Ig_Perlecan_D2_like: the immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2. Perlecan consists of five domains. Domain I has three putative heparan sulfate attachment sites; domain II has four LDL receptor-like repeats, and one Ig-like repeat; domain III resembles the short arm of laminin chains; domain IV has multiple Ig-like repeats (21 repeats in human perlecan); and domain V resembles the globular G domain of the laminin A chain and internal repeats of EGF. Perlecan may participate in a variety of biological functions including cell binding, LDL-metabolism, basement membrane assembly and selective permeability, calcium binding, and growth- and neurite-promoting activities.
Probab=99.54 E-value=1.7e-14 Score=88.32 Aligned_cols=70 Identities=24% Similarity=0.311 Sum_probs=55.1
Q ss_pred CCceEEEeeCCCCCCCCeEEEeEcCeEeccCCCceEEecCCCccccccccccccccccccccceeEEEEeeccccccc
Q psy15128 213 GETALLECGPPKGQPEPTLHWKKNGQFIDLESSKRVSILGDPWFDSRRSRSIFGSVLGALSDDQWKLIAKNIRNQQQH 290 (292)
Q Consensus 213 g~~~~l~C~~~~~~p~~~~~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~a~n~~g~~~~ 290 (292)
|+.+.|.|.+ .|.|.|.+.|++++..+.. ..++.+.... ....|.|..+..+|+|.|+|.|.|..|....
T Consensus 1 G~~v~l~C~~-~g~P~p~v~W~~~~~~~~~--~~~~~~~~~~-----~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~ 70 (78)
T cd05743 1 GETVEFTCVA-TGVPTPIINWRLNWGHVPD--SARVSITSEG-----GYGTLTIRDVKESDQGAYTCEAINTRGMVFG 70 (78)
T ss_pred CCEEEEEEEE-EEecCCEEEEEECCeECCC--CCCEEEEECC-----CEEEEEECCCChHHCEEEEEEEEecCCEEEe
Confidence 6889999998 8999999999999988752 2333332221 1236889999999999999999999998754
No 85
>PF07679 I-set: Immunoglobulin I-set domain; InterPro: IPR013098 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents I-set domains, which are found in several cell adhesion molecules, including vascular (VCAM), intercellular (ICAM), neural (NCAM) and mucosal addressin (MADCAM) cell adhesion molecules, as well as junction adhesion molecules (JAM). I-set domains are also present in several other diverse protein families, including several tyrosine-protein kinase receptors, the hemolymph protein hemolin, the muscle proteins titin, telokin, and twitchin, the neuronal adhesion molecule axonin-1 [], and the signalling molecule semaphorin 4D that is involved in axonal guidance, immune function and angiogenesis [].; PDB: 3MTR_A 2EDK_A 3DMK_B 1KOA_A 3NCM_A 2NCM_A 2V9Q_A 2CR3_A 3QQN_A 3QR2_A ....
Probab=99.54 E-value=2.7e-14 Score=90.47 Aligned_cols=78 Identities=28% Similarity=0.451 Sum_probs=63.5
Q ss_pred CcceEEeCCCceEEEeeCCCCCCCCeEEEeEcCeEeccCCCceEEecCCCccccccccccccccccccccceeEEEEeec
Q psy15128 205 PKDTRVASGETALLECGPPKGQPEPTLHWKKNGQFIDLESSKRVSILGDPWFDSRRSRSIFGSVLGALSDDQWKLIAKNI 284 (292)
Q Consensus 205 ~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~a~n~ 284 (292)
+....+.+|+++.|.|.+ .+.|.+.+.|+++|..+.......+.... ....|.|..+...|+|.|+|.|+|.
T Consensus 7 ~~~~~v~~G~~~~l~c~~-~~~p~~~v~W~~~~~~l~~~~~~~~~~~~-------~~~~L~I~~v~~~D~G~Y~C~~~n~ 78 (90)
T PF07679_consen 7 PKDVTVKEGESVTLECEV-SGNPPPTVTWYKNGRPLTSSQRYQIESDG-------GSSSLTIKNVTREDAGTYTCVASNS 78 (90)
T ss_dssp SSEEEEETTSEEEEEEEE-EESSSSEEEEEETTEEEESSSSEEEEEET-------TEEEEEESSESGGGSEEEEEEEEET
T ss_pred cCCEEEeCCCEEEEEEEE-EeCCCCcccccccccceeeeeeeeeeccc-------ceeEEccCCCChhhCEEEEEEEEEC
Confidence 357789999999999998 78899999999999999743333333322 3347999999999999999999999
Q ss_pred cccccc
Q psy15128 285 RNQQQH 290 (292)
Q Consensus 285 ~g~~~~ 290 (292)
.|..+.
T Consensus 79 ~g~~~~ 84 (90)
T PF07679_consen 79 SGEATA 84 (90)
T ss_dssp TEEEEE
T ss_pred CCEEEE
Confidence 998764
No 86
>cd05870 Ig5_NCAM-2 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM). Ig5_NCAM-2: the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.
Probab=99.54 E-value=4e-14 Score=90.80 Aligned_cols=80 Identities=19% Similarity=0.351 Sum_probs=59.5
Q ss_pred cceEEeCCCceEEEeeCCCCCCCCeEEEeEc--CeEeccC---CCceEEecCCCccccccccccccccccccccceeEEE
Q psy15128 206 KDTRVASGETALLECGPPKGQPEPTLHWKKN--GQFIDLE---SSKRVSILGDPWFDSRRSRSIFGSVLGALSDDQWKLI 280 (292)
Q Consensus 206 ~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~--g~~~~~~---~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~ 280 (292)
.+..+.+|+.++|.|.+ .|.|.|.+.|+++ |..+... .+.++.+.... ....|.|..+..+|+|.|+|.
T Consensus 9 ~~~~~~~G~~v~l~C~~-~G~P~p~i~W~k~~~g~~~~~~~~~~~~r~~v~~~~-----~~~~L~I~~v~~~D~G~Y~C~ 82 (98)
T cd05870 9 KNETTVENGAATLSCKA-EGEPIPEITWKRASDGHTFSEGDKSPDGRIEVKGQH-----GESSLHIKDVKLSDSGRYDCE 82 (98)
T ss_pred ccEEEcCCCcEEEEEec-ccCCCCeEEEEECCCCceeccCCcCcCceEEEeecC-----CeeEEEEeeCCcCCCEEEEEE
Confidence 46788899999999998 8999999999994 4444211 12234332211 123688999999999999999
Q ss_pred EeecccccccC
Q psy15128 281 AKNIRNQQQHG 291 (292)
Q Consensus 281 a~n~~g~~~~~ 291 (292)
|.|.+|.+..+
T Consensus 83 A~N~~G~~~~~ 93 (98)
T cd05870 83 AASRIGGHQKS 93 (98)
T ss_pred EeccCCcceeE
Confidence 99999987653
No 87
>cd05744 Ig_Myotilin_C_like Immunoglobulin (Ig)-like domain of myotilin, palladin, and myopalladin. Ig_Myotilin_like_C: immunoglobulin (Ig)-like domain in myotilin, palladin, and myopalladin. Myotilin, palladin, and myopalladin function as scaffolds that regulate actin organization. Myotilin and myopalladin are most abundant in skeletal and cardiac muscle; palladin is ubiquitously expressed in the organs of developing vertebrates and plays a key role in cellular morphogenesis. The three family members each interact with specific molecular partners: all three bind to alpha-actinin; in addition, palladin also binds to vasodilator-stimulated phosphoprotein (VASP) and ezrin, myotilin binds to filamin and actin, and myopalladin also binds to nebulin and cardiac ankyrin repeat protein (CARP).
Probab=99.54 E-value=6.8e-14 Score=84.69 Aligned_cols=70 Identities=29% Similarity=0.507 Sum_probs=54.4
Q ss_pred EEEEEEEeeeCCCeeEEEECCeEEeeccCCCcceeEEee----ecEEEEccCCCCCCeEEEEEEEeCCcCeeEEEEEE
Q psy15128 54 ASFQCVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQ----EGTLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQ 127 (292)
Q Consensus 54 ~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~----~~~l~i~~~~~~d~g~Y~C~~~~~~~~~~~~~~l~ 127 (292)
+.|.|.+.|.|.|.+.|+|++..+... ..+..... ...|.|.+++.+|+|.|+|.+.|..|.....+.|.
T Consensus 1 v~L~C~v~G~P~P~v~W~k~~~~i~~~----~~r~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~ 74 (75)
T cd05744 1 VRLECRVSAIPPPQIFWKKNNEMLTYN----TDRISLYQDNCGRICLLIQNANKEDAGWYTVSAVNEAGVVSCNARLD 74 (75)
T ss_pred CEEEEEEeecCCCeEEEEECCEECCCC----CCcEEEEEcCCCeEEEEECCCCcccCEEEEEEEEcCCCcEEEEEEEe
Confidence 479999999999999999999776321 11222211 12699999999999999999999999888777664
No 88
>cd05746 Ig4_Peroxidasin Fourth immunoglobulin (Ig)-like domain of peroxidasin. Ig4_Peroxidasin: the fourth immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted, and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells, which have undergone programmed cell death, and protection of the organism against non-self.
Probab=99.54 E-value=7.1e-14 Score=83.34 Aligned_cols=68 Identities=34% Similarity=0.676 Sum_probs=55.2
Q ss_pred EEEEEEEeeeCCCeeEEEECCeEEeeccCCCcceeEEeeecEEEEccCCCCCCeEEEEEEEeCCcCeeEEEEE
Q psy15128 54 ASFQCVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRAFL 126 (292)
Q Consensus 54 ~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~~~~~~~~~l 126 (292)
+.|.|.+.|.|.|.+.|+|++..+. ...+......+.|.|.++..+|+|.|+|.+.|..|.......|
T Consensus 1 v~L~C~~~g~P~p~i~W~k~g~~~~-----~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~L 68 (69)
T cd05746 1 VQIPCSAQGDPEPTITWNKDGVQVT-----ESGKFHISPEGYLAIRDVGVADQGRYECVARNTIGYASVSMVL 68 (69)
T ss_pred CEeEecceEeCCCEEEEEECCEECC-----CCCCEEECCCCEEEECcCChhhCEEEEEEEECCCCcEEEEEEe
Confidence 4799999999999999999987653 1123334456789999999999999999999999987766654
No 89
>cd07693 Ig1_Robo First immunoglobulin (Ig)-like domain in Robo (roundabout) receptors and similar proteins. Ig1_Robo: domain similar to the first immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit res
Probab=99.54 E-value=5.6e-14 Score=91.00 Aligned_cols=81 Identities=25% Similarity=0.426 Sum_probs=56.2
Q ss_pred CcceEEeCCCceEEEeeCCCCCCCCeEEEeEcCeEeccC---CCceEEecCCCccccccccccccccccccccceeEEEE
Q psy15128 205 PKDTRVASGETALLECGPPKGQPEPTLHWKKNGQFIDLE---SSKRVSILGDPWFDSRRSRSIFGSVLGALSDDQWKLIA 281 (292)
Q Consensus 205 ~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~g~~~~~~---~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~a 281 (292)
+....+.+|+.+.|.|.+ .|.|.|.+.|+|+|+.+... ...+.....++... ...+.+..+..+|+|.|+|.|
T Consensus 8 p~~~~v~~G~~~~l~C~~-~g~P~p~i~W~k~g~~l~~~~~~~~~~~~~~~~~~~~---~~~i~~~~~~~~D~G~Y~C~a 83 (100)
T cd07693 8 PSDLIVSKGDPATLNCKA-EGRPTPTIQWLKNGQPLETDKDDPRSHRIVLPSGSLF---FLRVVHGRKGRSDEGVYVCVA 83 (100)
T ss_pred CceeEEcCCCeEEEEeeC-CcCCCCEEEEEECCEECccccCCCCcceEEecCCcEE---EEEeeccCCCcCcCEEEEEEE
Confidence 356788899999999998 89999999999999988541 11222222222111 011222334789999999999
Q ss_pred eecccccc
Q psy15128 282 KNIRNQQQ 289 (292)
Q Consensus 282 ~n~~g~~~ 289 (292)
+|..|...
T Consensus 84 ~N~~G~~~ 91 (100)
T cd07693 84 HNSLGEAV 91 (100)
T ss_pred Ecccccee
Confidence 99999843
No 90
>cd04968 Ig3_Contactin_like Third Ig domain of contactin. Ig3_Contactin_like: Third Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week
Probab=99.53 E-value=3.3e-14 Score=89.34 Aligned_cols=74 Identities=24% Similarity=0.436 Sum_probs=58.7
Q ss_pred CcceEEeCCCceEEEeeCCCCCCCCeEEEeEcCeEeccCCCceEEecCCCccccccccccccccccccccceeEEEEeec
Q psy15128 205 PKDTRVASGETALLECGPPKGQPEPTLHWKKNGQFIDLESSKRVSILGDPWFDSRRSRSIFGSVLGALSDDQWKLIAKNI 284 (292)
Q Consensus 205 ~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~a~n~ 284 (292)
+....+.+|+.+.|.|.+ .|.|.|.+.|++++..+... ..... ....|.|..+..+|+|.|.|.|.|.
T Consensus 8 p~~~~~~~g~~v~l~C~~-~g~P~p~v~W~k~~~~~~~~--~~~~~---------~~~~L~i~~v~~~D~G~Y~C~a~N~ 75 (88)
T cd04968 8 PKDTYALKGQNVTLECFA-LGNPVPQIKWRKVDGSMPSS--AEISM---------SGAVLKIPNIQFEDEGTYECEAENI 75 (88)
T ss_pred CCceEEeCCCcEEEEEEe-eEeCCCEEEEEECCCcCCCc--cEEEE---------eCCEEEECCCCcccCEEEEEEEEEC
Confidence 356678899999999998 89999999999988765321 11111 1226889999999999999999999
Q ss_pred cccccc
Q psy15128 285 RNQQQH 290 (292)
Q Consensus 285 ~g~~~~ 290 (292)
.|.+..
T Consensus 76 ~G~~~~ 81 (88)
T cd04968 76 KGKDTH 81 (88)
T ss_pred CCcEEE
Confidence 998764
No 91
>cd05732 Ig5_NCAM-1_like Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM) and similar proteins. Ig5_NCAM-1 like: domain similar to the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM mole
Probab=99.53 E-value=3.2e-14 Score=91.20 Aligned_cols=80 Identities=18% Similarity=0.307 Sum_probs=60.8
Q ss_pred cceEEeCCCceEEEeeCCCCCCCCeEEEeEcCeEeccCC---CceEEecCCCccccccccccccccccccccceeEEEEe
Q psy15128 206 KDTRVASGETALLECGPPKGQPEPTLHWKKNGQFIDLES---SKRVSILGDPWFDSRRSRSIFGSVLGALSDDQWKLIAK 282 (292)
Q Consensus 206 ~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~g~~~~~~~---~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~a~ 282 (292)
....+.+|+.+.|.|.+ .|.|.|.+.|++++..+.... ..++.+... .....|.|..+..+|+|.|.|.|+
T Consensus 9 ~~~~~~~g~~v~l~C~~-~g~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~L~I~~v~~~D~G~Y~C~a~ 82 (96)
T cd05732 9 ENQTAVELEQITLTCEA-EGDPIPEITWRRATRNFSEGDKSLDGRIVVRGH-----ARVSSLTLKDVQLTDAGRYDCEAS 82 (96)
T ss_pred CceeEecCCcEEEEEEE-eEcCCCcEEEEECCcccCCCCccccceEEEeCC-----ccEEEEEECcCCcCcCEEeEEEEE
Confidence 45678899999999998 899999999999987664221 122322211 112368899999999999999999
Q ss_pred ecccccccC
Q psy15128 283 NIRNQQQHG 291 (292)
Q Consensus 283 n~~g~~~~~ 291 (292)
|..|.++.+
T Consensus 83 N~~G~~~~s 91 (96)
T cd05732 83 NRIGGDQQS 91 (96)
T ss_pred eCCCCcEEE
Confidence 999998654
No 92
>cd05738 Ig2_RPTP_IIa_LAR_like Second immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. Ig2_RPTP_IIa_LAR_like: domain similar to the second immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple Ig-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains.
Probab=99.53 E-value=2.4e-14 Score=86.59 Aligned_cols=64 Identities=20% Similarity=0.359 Sum_probs=52.2
Q ss_pred eEEEeeCCCCCCCCeEEEeEcCeEeccCCCceEEecCCCccccccccccccccccccccceeEEEEeeccccc
Q psy15128 216 ALLECGPPKGQPEPTLHWKKNGQFIDLESSKRVSILGDPWFDSRRSRSIFGSVLGALSDDQWKLIAKNIRNQQ 288 (292)
Q Consensus 216 ~~l~C~~~~~~p~~~~~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~a~n~~g~~ 288 (292)
++|.|.+ .|.|.|.+.|++++.++......++....++ .|.|..+...|+|.|.|.|.|..|..
T Consensus 1 a~l~C~~-~G~P~p~v~W~k~~~~~~~~~~~~~~~~~~g--------~L~i~~~~~~D~G~Y~C~a~N~~G~~ 64 (74)
T cd05738 1 ATMLCAA-SGNPDPEITWFKDFLPVDTTSNGRIKQLRSG--------ALQIENSEESDQGKYECVATNSAGTR 64 (74)
T ss_pred CEEEEEE-eEecCCEEEEEECCEECccCCCCCEEEcCCc--------EEEECCCChhhCEEEEEEEECCCCce
Confidence 4799998 8999999999999998854344455543332 47888999999999999999999985
No 93
>cd05869 Ig5_NCAM-1 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). Ig5_NCAM-1: The fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM) and heterophilic (NCAM-non-NCAM) interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (tr
Probab=99.53 E-value=3.6e-14 Score=90.79 Aligned_cols=77 Identities=18% Similarity=0.319 Sum_probs=57.5
Q ss_pred EEeCCCceEEEeeCCCCCCCCeEEEeEcCeEeccCC---CceEEecCCCccccccccccccccccccccceeEEEEeecc
Q psy15128 209 RVASGETALLECGPPKGQPEPTLHWKKNGQFIDLES---SKRVSILGDPWFDSRRSRSIFGSVLGALSDDQWKLIAKNIR 285 (292)
Q Consensus 209 ~~~~g~~~~l~C~~~~~~p~~~~~W~~~g~~~~~~~---~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~a~n~~ 285 (292)
.+..|+.++|.|.+ .|.|.|.++|+++++.+.... ..++.+... .....|.|..+..+|+|.|+|.|.|..
T Consensus 13 ~~~~g~~v~l~C~~-~G~P~P~v~W~~~~~~~~~~~~~~~~~~~v~~~-----~~~~~L~I~~v~~~D~G~Y~C~A~N~~ 86 (97)
T cd05869 13 AMELEEQITLTCEA-SGDPIPSITWRTSTRNISSEEKTLDGHIVVRSH-----ARVSSLTLKYIQYTDAGEYLCTASNTI 86 (97)
T ss_pred EEEcCCCEEEEEEe-eEeCCCEEEEEECCccccCCccccCccEEEEcC-----ccEEEEEEecCccCcCEEEEEEEecCC
Confidence 34458999999998 899999999999988764221 112222221 112368899999999999999999999
Q ss_pred cccccC
Q psy15128 286 NQQQHG 291 (292)
Q Consensus 286 g~~~~~ 291 (292)
|.++.+
T Consensus 87 G~~~~~ 92 (97)
T cd05869 87 GQDSQS 92 (97)
T ss_pred CCeeEE
Confidence 998754
No 94
>cd04976 Ig2_VEGFR Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR). Ig2_VEGFR: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A. VEGFR-1 may play an inhibitory part in these processes by binding VEGF and interfering with its interaction with VEGFR-2. VEGFR-1 has a signa
Probab=99.53 E-value=1.5e-13 Score=82.16 Aligned_cols=70 Identities=17% Similarity=0.283 Sum_probs=56.3
Q ss_pred EEEEEEEeeeCCCeeEEEECCeEEeeccCCCcceeEEeeecEEEEccCCCCCCeEEEEEEEeCCcCeeEEEEEEEE
Q psy15128 54 ASFQCVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVT 129 (292)
Q Consensus 54 ~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~~~~~~~~~l~v~ 129 (292)
+.|.|.+.|.|.|.+.|+|++..+... .+ .......|.|.++..+|+|.|+|.+.|..|.......+.+.
T Consensus 1 ~~l~c~v~g~P~p~v~W~k~g~~l~~~-----~~-~~~~~~~L~I~~v~~~D~G~YtC~a~N~~g~~~~~~~~~~~ 70 (71)
T cd04976 1 VRLPVKVKAYPPPEIQWYKNGKLISEK-----NR-TKKSGHSLTIKDVTEEDAGNYTVVLTNKQAKLEKRLTFTLV 70 (71)
T ss_pred CEEEeEEEEeCCCEEEEEECCEECCCC-----CE-EEcCCCEEEECcCCHHHCEEEEEEEEcCCccEEEEEEEEEE
Confidence 468999999999999999999876311 12 23345689999999999999999999999887777776653
No 95
>cd05876 Ig3_L1-CAM Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). Ig3_L1-CAM: third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.
Probab=99.52 E-value=1.6e-14 Score=86.64 Aligned_cols=65 Identities=18% Similarity=0.368 Sum_probs=50.8
Q ss_pred eEEEeeCCCCCCCCeEEEeEcCeEeccCCCceEEecCCCccccccccccccccccccccceeEEEEeecccccccC
Q psy15128 216 ALLECGPPKGQPEPTLHWKKNGQFIDLESSKRVSILGDPWFDSRRSRSIFGSVLGALSDDQWKLIAKNIRNQQQHG 291 (292)
Q Consensus 216 ~~l~C~~~~~~p~~~~~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~a~n~~g~~~~~ 291 (292)
+.|.|.+ .|.|.|.+.|++++..+... ...... ....|.|..+..+|+|.|+|.|.|..|.++++
T Consensus 1 ~~L~C~~-~G~P~P~v~W~k~~~~~~~~--~~~~~~--------~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~ 65 (71)
T cd05876 1 LVLECIA-EGLPTPEVHWDRIDGPLSPN--RTKKLN--------NNKTLQLDNVLESDDGEYVCTAENSEGSARHH 65 (71)
T ss_pred CEEEEEe-eEecCCeEEEEECCcCCCCC--ceeEEc--------CCCEEEEcccCHHhCEEEEEEEEcCCCeEEEE
Confidence 4799998 89999999999998876421 111111 22368899999999999999999999997653
No 96
>cd05733 Ig6_L1-CAM_like Sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins. Ig6_L1-CAM_like: domain similar to the sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains NrCAM [Ng(neuronglia)CAM-related cell adhesion molecule], which is primarily expressed in the nervous system, and human neurofascin.
Probab=99.52 E-value=3.9e-14 Score=86.37 Aligned_cols=66 Identities=26% Similarity=0.492 Sum_probs=48.9
Q ss_pred eEEEeeCCCCCCCCeEEEeEcCeEeccCCCceEEecCCCcccccccccccccccc----ccccceeEEEEeecccccc
Q psy15128 216 ALLECGPPKGQPEPTLHWKKNGQFIDLESSKRVSILGDPWFDSRRSRSIFGSVLG----ALSDDQWKLIAKNIRNQQQ 289 (292)
Q Consensus 216 ~~l~C~~~~~~p~~~~~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~----~~~~g~y~C~a~n~~g~~~ 289 (292)
++|.|.+ .|.|.|.++|+++|.++......++..... ...|.|..+. .+|+|.|.|+|+|..|++.
T Consensus 1 i~l~C~~-~G~P~P~v~W~k~g~~l~~~~~~~~~~~~~-------~g~L~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~ 70 (77)
T cd05733 1 IVIKCEA-KGNPPPTFSWTRNGTHFDPEKDPRVTMKPD-------SGTLVIDNMNGGRAEDYEGEYQCYASNELGTAI 70 (77)
T ss_pred CEEEeeC-cccCCCeEEEEECCeECCCCCCCCEEEeCC-------CCEEEEeccCCCCCcCCCEEEEEEEEcCCCcEE
Confidence 4799998 899999999999999885444444443221 1245666554 3689999999999999864
No 97
>cd05876 Ig3_L1-CAM Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). Ig3_L1-CAM: third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.
Probab=99.52 E-value=1.2e-13 Score=82.81 Aligned_cols=70 Identities=27% Similarity=0.510 Sum_probs=55.3
Q ss_pred EEEEEEEeeeCCCeeEEEECCeEEeeccCCCcceeEEeeecEEEEccCCCCCCeEEEEEEEeCCcCeeEEEEEEE
Q psy15128 54 ASFQCVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQV 128 (292)
Q Consensus 54 ~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~~~~~~~~~l~v 128 (292)
+.|.|.+.|.|.|.+.|++++..+.. . ........+.|.|.+++.+|+|.|+|.|.|..|.......|.|
T Consensus 1 ~~L~C~~~G~P~P~v~W~k~~~~~~~--~---~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V 70 (71)
T cd05876 1 LVLECIAEGLPTPEVHWDRIDGPLSP--N---RTKKLNNNKTLQLDNVLESDDGEYVCTAENSEGSARHHYTVTV 70 (71)
T ss_pred CEEEEEeeEecCCeEEEEECCcCCCC--C---ceeEEcCCCEEEEcccCHHhCEEEEEEEEcCCCeEEEEEEEEE
Confidence 47899999999999999999875421 1 1122334568999999999999999999999998777766654
No 98
>cd05722 Ig1_Neogenin First immunoglobulin (Ig)-like domain in neogenin and similar proteins. Ig1_Neogenin: first immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.
Probab=99.52 E-value=7.8e-14 Score=88.99 Aligned_cols=75 Identities=25% Similarity=0.525 Sum_probs=57.1
Q ss_pred CcceEEeCCCceEEEeeCCCCCCCCeEEEeEcCeEeccCCCceEEecCCCccccccccccccccc-----cccccceeEE
Q psy15128 205 PKDTRVASGETALLECGPPKGQPEPTLHWKKNGQFIDLESSKRVSILGDPWFDSRRSRSIFGSVL-----GALSDDQWKL 279 (292)
Q Consensus 205 ~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~-----~~~~~g~y~C 279 (292)
|....+.+|+.+.|.|.+ .+.|.|.+.|+|+|..+......+.....++ .+.|..+ ...|.|.|+|
T Consensus 6 P~~~~~~~g~~v~l~C~v-~g~P~p~i~W~k~g~~l~~~~~~~~~~~~~~--------~l~i~~v~~~~~~~~D~G~Y~C 76 (95)
T cd05722 6 PSDIVAVRGGPVVLNCSA-EGEPPPKIEWKKDGVLLNLVSDERRQQLPNG--------SLLITSVVHSKHNKPDEGFYQC 76 (95)
T ss_pred CCCeEEcCCCCEEEeeec-ccCCCCEEEEEECCeECccccCcceEEccCC--------eEEEeeeeccCCCCCcCEEEEE
Confidence 456778899999999998 8999999999999998864333333333333 2334333 6889999999
Q ss_pred EEeec-cccc
Q psy15128 280 IAKNI-RNQQ 288 (292)
Q Consensus 280 ~a~n~-~g~~ 288 (292)
.|.|. .|..
T Consensus 77 ~a~N~~~G~~ 86 (95)
T cd05722 77 VAQNDSLGSI 86 (95)
T ss_pred EEECCccCcE
Confidence 99999 9986
No 99
>cd05748 Ig_Titin_like Immunoglobulin (Ig)-like domain of titin and similar proteins. Ig_Titin_like: immunoglobulin (Ig)-like domain found in titin-like proteins. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic, depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone. It appears to function similarly to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching. Within the sarcomere, titin is also attached to or is associated with myosin binding protein C (MyBP-C). MyBP-C appears to contribute to the generation of passive tension by titin, and similar to titin has repeated Ig-like and FN-
Probab=99.52 E-value=2.2e-13 Score=82.56 Aligned_cols=73 Identities=16% Similarity=0.335 Sum_probs=55.5
Q ss_pred cEEEEEEEeeeCCCeeEEEECCeEEeeccCCCcceeEEeeecEEEEccCCCCCCeEEEEEEEeCCcCeeEEEEEE
Q psy15128 53 IASFQCVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQ 127 (292)
Q Consensus 53 ~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~~~~~~~~~l~ 127 (292)
.+.|.|.+.|.|.|.+.|++++..+. ...............|.|.++..+|+|.|+|.+.|..|.....+.|.
T Consensus 1 ~~~l~c~~~G~P~p~v~W~k~g~~l~--~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~ 73 (74)
T cd05748 1 SVRLEVPISGRPTPTVTWSKDGKPLK--LSGRVQIETTASSTSLVIKNAERSDSGKYTLTLKNPAGEKSATINVK 73 (74)
T ss_pred CEEEEeeEeeeCCCeEEEEECCEEcC--CCCeEEEEECCCeEEEEECCCCcCcCEEEEEEEECCCccEEEEEEEE
Confidence 37899999999999999999998762 11111111112345899999999999999999999999877766654
No 100
>KOG3515|consensus
Probab=99.52 E-value=2.6e-13 Score=112.77 Aligned_cols=277 Identities=18% Similarity=0.247 Sum_probs=162.8
Q ss_pred CeeEEEEEEecccccccccEEEEEeCCCcEEeCCCccEEecCCcEEEEEEEe--eeCCCeeEEEECCeEEeeccCCCcce
Q psy15128 10 EGKYQCYVQNMVGERETKPALLTVHAPPSFVVRPQDQKVGLNGIASFQCVAE--GSPLPSVFWTQEGSQVLMFPGNAYGH 87 (292)
Q Consensus 10 ~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~--~~~~~~v~W~~~~~~~~~~~~~~~~~ 87 (292)
-+.|.|.+.|..+........+.+..+|.-...........+..+.+.|... +.|.+.+.|..++.............
T Consensus 71 ~~~~~c~a~ns~~~~~~~~~~l~v~~~pa~~~~~~e~~~~~~~vvqi~c~~~~~~~P~~nlrW~~n~r~e~~~~~~~~~~ 150 (741)
T KOG3515|consen 71 VAELNCRAFNSVGMPSRCPMILDVDYPPACLPELGEIFQVDKGVVQIICSAKVAGRPNPNLRWGFNNRAELNAVNQRGRV 150 (741)
T ss_pred hhhhhhhhcccccCceecceeeccccCccccccccchhhhcCCeEEEEEeecCCCCCCcceeeeeccEEeecccCCcccc
Confidence 4489999998877766666888888888766555556667788899999654 35777999999876554333211111
Q ss_pred e------EEeeecEEEEccCCCCCCeEEEEEEEeCCcCe-eEEEEEEEEeecCCCCCeEEeCCCCceecCCCeEEEEeEe
Q psy15128 88 L------HVTQEGTLRIQGVQKEDAGFFVCSALSVAGST-TVRAFLQVTSVEDTPPPIVQVGPSNQTLPLHSVAFLPCQA 160 (292)
Q Consensus 88 ~------~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~~~~-~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~g~~v~l~C~~ 160 (292)
. .......+.+.....++.|.|+|.+.+..... .....+.+.+..............-..+.+|..+.|.|.+
T Consensus 151 ~~~a~gss~t~~s~l~~~v~Rka~~g~~tC~A~nr~s~~l~~~~~~~i~v~~~~~~~~~~~~~~~qsF~~g~~inlvc~~ 230 (741)
T KOG3515|consen 151 GAGALGSSYTEPSLLKQTVSRKADNGNYTCPANNRNSPGLSFAKQLTIIVEAPCKGIGITGAQEQQSFTEGQTINLVCNA 230 (741)
T ss_pred cccccCceeccccceeeEEEEecCCceeEcccccccCccccccceeEeecccccccceecchhhcCcccccceEEEEehh
Confidence 1 11234568888888999999999998742211 1122223322222222222222222557799999999987
Q ss_pred c-cCCCCceEEEeCCeeCCCCCccEEEcCCC------------------cEEEEeee--------------cCCCCCCcc
Q psy15128 161 V-GSPPPHIRWYKNGNSLPPEDTRINVSSSG------------------SLQIDVLR--------------DDFRAEPKD 207 (292)
Q Consensus 161 ~-~~p~~~~~W~~~~~~l~~~~~~~~~~~~~------------------~l~i~~~~--------------~~d~g~~~~ 207 (292)
. +.|.+.+.|+++........ ......++ .+....-. ..--.....
T Consensus 231 ~gg~P~~~~~w~~~s~~~~~~s-l~~~~~sg~~v~~~~~~~~~r~~~~~~~kc~a~n~~~~~~~tav~~~~~~~~Ist~~ 309 (741)
T KOG3515|consen 231 QGGNPSQQQTWYKDSRPQSESS-LLSQEPSGDTVSSTLVLRVGRQDLQAQLKCKASNLLAASQITAVQVKPTAVPISTSD 309 (741)
T ss_pred hcCCcchhhhhccccccchhhh-cccCCCCCCcccccccccccccchhhhhhccccCccccceeeecccccccccccCcc
Confidence 4 55888999999766554320 00000000 00010000 000012234
Q ss_pred eEEeCCCceEEEeeCCCCCCCCeEEEeEcCeEeccCCCceEEecCCCccccccccccccccccccccceeEEEEeecccc
Q psy15128 208 TRVASGETALLECGPPKGQPEPTLHWKKNGQFIDLESSKRVSILGDPWFDSRRSRSIFGSVLGALSDDQWKLIAKNIRNQ 287 (292)
Q Consensus 208 ~~~~~g~~~~l~C~~~~~~p~~~~~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~a~n~~g~ 287 (292)
..+..|+...+.|......|.+.+.|+++...........- ............+..-.....|.|.|+|.|.|..+.
T Consensus 310 ~~ls~g~s~r~~c~~sss~p~~~i~w~~~~~~~~~~~~~~~---~t~~~~~v~~~~~~~q~~~~~~~g~v~c~a~~~~~~ 386 (741)
T KOG3515|consen 310 SGLSSGRSARSSCVSSSSKPPAHIAWYKDTKMPKGSQKASS---KTSNMGGVAVISHYAQPSSQQDGGQVTCPADNLELA 386 (741)
T ss_pred cccccccccccceeccCCCCccceeeeccCcccccccCccc---CCCcccceeeEEeeecccchhcCceEEccccccccc
Confidence 44778999999999877899999999996554321111111 111111111112333467778899999999998855
Q ss_pred ccc
Q psy15128 288 QQH 290 (292)
Q Consensus 288 ~~~ 290 (292)
.+.
T Consensus 387 ~~s 389 (741)
T KOG3515|consen 387 HSS 389 (741)
T ss_pred ccc
Confidence 443
No 101
>cd05854 Ig6_Contactin-2 Sixth Ig domain of contactin-2. Ig6_Contactin-2: Sixth Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c
Probab=99.51 E-value=5.1e-13 Score=82.89 Aligned_cols=79 Identities=25% Similarity=0.381 Sum_probs=60.2
Q ss_pred CcEEEEEEEeeeCCC--eeEEEECCeEEeeccC-CCcceeEE-eeecEEEEccCCCCCCeEEEEEEEeCCcCeeEEEEEE
Q psy15128 52 GIASFQCVAEGSPLP--SVFWTQEGSQVLMFPG-NAYGHLHV-TQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQ 127 (292)
Q Consensus 52 ~~~~l~C~~~~~~~~--~v~W~~~~~~~~~~~~-~~~~~~~~-~~~~~l~i~~~~~~d~g~Y~C~~~~~~~~~~~~~~l~ 127 (292)
+.++|.|.+.|.|.+ .+.|++++..+..... ....+... ...+.|.|.+++..|+|.|+|.|.|..|.....+.|.
T Consensus 1 ~~~~L~C~a~g~P~p~~~v~W~~~g~~i~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~YtC~A~n~~g~~~~~~~L~ 80 (85)
T cd05854 1 ENLTLQCHASHDPTMDLTFTWSLDDFPIDLDKPNGHYRRMEVKETIGDLVIVNAQLSHAGTYTCTAQTVVDSASASATLV 80 (85)
T ss_pred CcEEEEEEEecCCCCCeEEEEEECCeEccccCCCCcEEEEEecceEeEEEEccCChhhCeEEEEEEecCCCCEEEEEEEE
Confidence 468999999999876 5899999987643221 11111111 2346899999999999999999999999999988888
Q ss_pred EEe
Q psy15128 128 VTS 130 (292)
Q Consensus 128 v~~ 130 (292)
|.+
T Consensus 81 V~~ 83 (85)
T cd05854 81 VRG 83 (85)
T ss_pred EEC
Confidence 864
No 102
>cd05749 Ig2_Tyro3_like Second immunoglobulin (Ig)-like domain of Axl/Tyro3 receptor tyrosine kinases (RTKs). Ig2_Tyro3_like: the second immunoglobulin (Ig)-like domain in the Axl/Tyro3 family of receptor tyrosine kinases (RTKs). This family includes Axl (also known as Ark, Ufo, and Tyro7), Tyro3 (also known as Sky, Rse, Brt, Dtk, and Tif), and Mer (also known as Nyk, c-Eyk, and Tyro12). Axl/Tyro3 family receptors have an extracellular portion with two Ig-like domains followed by two fibronectin-types III (FNIII) domains, a membrane-spanning single helix, and a cytoplasmic tyrosine kinase domain. Axl, Tyro3 and Mer are widely expressed in adult tissues, though they show higher expression in the brain, in the lymphatic and vascular systems, and in the testis. Axl, Tyro3, and Mer bind the vitamin K dependent protein Gas6 with high affinity, and in doing so activate their tyrosine kinase activity. Axl/Gas6 signaling may play a part in cell adhesion processes, prevention of apoptosis, and c
Probab=99.51 E-value=5.6e-14 Score=85.82 Aligned_cols=69 Identities=20% Similarity=0.312 Sum_probs=53.4
Q ss_pred CcceEEeCCCceEEEeeCCCCCCCC-eEEEeEcCeEeccCCCceEEecCCCccccccccccccccccccccceeEEEEee
Q psy15128 205 PKDTRVASGETALLECGPPKGQPEP-TLHWKKNGQFIDLESSKRVSILGDPWFDSRRSRSIFGSVLGALSDDQWKLIAKN 283 (292)
Q Consensus 205 ~~~~~~~~g~~~~l~C~~~~~~p~~-~~~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~a~n 283 (292)
|.+..+.+|+.+.|.|.+ .|.|.| .|.|+++|.++.. .... ....|.|..+ .|.|.|.|+|+|
T Consensus 5 P~~~~v~~G~~v~l~C~a-~G~P~P~~I~W~k~g~~l~~----~~~~---------~~s~L~i~~~--~d~g~Y~C~A~N 68 (81)
T cd05749 5 PEDLSVTANTPFNLTCQA-VGPPEPVEILWWQGGSPLGD----PPAP---------SPSVLNVPGL--NETSKFSCEAHN 68 (81)
T ss_pred CCceEEcCCCCEEEEEEe-eeecCCeEEEEEECCEECCC----CCCC---------CCCEEEEccc--cCCeEEEEEEEe
Confidence 567889999999999998 999999 7999999998842 0000 1124556554 478999999999
Q ss_pred cccccc
Q psy15128 284 IRNQQQ 289 (292)
Q Consensus 284 ~~g~~~ 289 (292)
.+|...
T Consensus 69 ~~G~~~ 74 (81)
T cd05749 69 AKGVTT 74 (81)
T ss_pred ccCcEE
Confidence 999764
No 103
>cd05891 Ig_M-protein_C C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2). Ig_M-protein_C: the C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2). M-protein is a structural protein localized to the M-band, a transverse structure in the center of the sarcomere, and is a candidate for M-band bridges. M-protein is modular consisting mainly of repetitive IG-like and fibronectin type III (FnIII) domains, and has a muscle-type specific expression pattern. M-protein is present in fast fibers.
Probab=99.51 E-value=4.9e-13 Score=84.43 Aligned_cols=82 Identities=22% Similarity=0.425 Sum_probs=62.8
Q ss_pred CCccEEecCCcEEEEEEEeeeCCCeeEEEECCeEEeeccCCCcceeEEe--eecEEEEccCCCCCCeEEEEEEEeCCcCe
Q psy15128 43 PQDQKVGLNGIASFQCVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVT--QEGTLRIQGVQKEDAGFFVCSALSVAGST 120 (292)
Q Consensus 43 ~~~~~~~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~--~~~~l~i~~~~~~d~g~Y~C~~~~~~~~~ 120 (292)
|..+.+.+|+.+.|.|.+.+.|.+.+.|++++..+... ... ..... ....|.|.+++.+|+|.|+|.+.|..|..
T Consensus 8 p~~v~v~eG~~v~L~C~v~g~P~p~i~W~k~~~~~~~~--~~~-~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~ 84 (92)
T cd05891 8 PDVVTIMEGKTLNLTCTVFGNPDPEVIWFKNDQDIELS--EHY-SVKLEQGKYASLTIKGVTSEDSGKYSINVKNKYGGE 84 (92)
T ss_pred CCcEEEcCCCEEEEEEEEEEeCCCeEEEEECCEECCCC--CCE-EEEEcCCCEEEEEECCCChhhCEEEEEEEEeCCCce
Confidence 45677889999999999999999999999998765321 111 11111 12379999999999999999999999887
Q ss_pred eEEEEEE
Q psy15128 121 TVRAFLQ 127 (292)
Q Consensus 121 ~~~~~l~ 127 (292)
...+.|.
T Consensus 85 ~~~~~v~ 91 (92)
T cd05891 85 TVDVTVS 91 (92)
T ss_pred eeEEEEE
Confidence 7666554
No 104
>cd05866 Ig1_NCAM-2 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2. Ig1_NCAM-2: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2 (OCAM/mamFas II, RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.
Probab=99.51 E-value=6e-13 Score=83.43 Aligned_cols=76 Identities=26% Similarity=0.495 Sum_probs=57.9
Q ss_pred EeCCCccEEecCCcEEEEEEEeeeCCCeeEEEEC-CeEEeeccCCCcceeEEeee---cEEEEccCCCCCCeEEEEEEEe
Q psy15128 40 VVRPQDQKVGLNGIASFQCVAEGSPLPSVFWTQE-GSQVLMFPGNAYGHLHVTQE---GTLRIQGVQKEDAGFFVCSALS 115 (292)
Q Consensus 40 ~~~~~~~~~~~g~~~~l~C~~~~~~~~~v~W~~~-~~~~~~~~~~~~~~~~~~~~---~~l~i~~~~~~d~g~Y~C~~~~ 115 (292)
.+.+.+..+.+|+.+.|.|.+.|.|. .+.|+++ +..+. .+ .+.....+ ..|.|.++..+|+|.|+|.|.|
T Consensus 4 ~~~~~~~~v~~G~~v~l~C~~~G~P~-~v~W~k~~g~~~~--~~---~r~~~~~~g~~~~L~I~~v~~~D~G~Y~C~A~N 77 (92)
T cd05866 4 SISLSKVELSVGESKFFTCTAIGEPE-SIDWYNPQGEKIV--SS---QRVVVQKEGVRSRLTIYNANIEDAGIYRCQATD 77 (92)
T ss_pred EEEecceEEcCCCeEEEEEEEEEeCC-eEEEEeCCCeEec--CC---CCEEEEeCCCeeEEEEecCChHHCEEEEEEEEc
Confidence 34556677899999999999999888 8999985 44432 21 22333323 3899999999999999999999
Q ss_pred CCcCee
Q psy15128 116 VAGSTT 121 (292)
Q Consensus 116 ~~~~~~ 121 (292)
..|...
T Consensus 78 ~~G~~~ 83 (92)
T cd05866 78 AKGQTQ 83 (92)
T ss_pred CCCcEE
Confidence 988753
No 105
>cd05849 Ig1_Contactin-1 First Ig domain of contactin-1. Ig1_Contactin-1: First Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may, through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.
Probab=99.51 E-value=1.2e-13 Score=87.14 Aligned_cols=66 Identities=23% Similarity=0.402 Sum_probs=51.3
Q ss_pred CCceEEEeeCCCCCCCCeEEEeEcCeEeccCCCceEEecCCCcccccccccccccccc-ccccceeEEEEeecccccc
Q psy15128 213 GETALLECGPPKGQPEPTLHWKKNGQFIDLESSKRVSILGDPWFDSRRSRSIFGSVLG-ALSDDQWKLIAKNIRNQQQ 289 (292)
Q Consensus 213 g~~~~l~C~~~~~~p~~~~~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~-~~~~g~y~C~a~n~~g~~~ 289 (292)
|..+.|.|.| .|.|.|.++|++++.++... ..++.+.. ..|.|..+. ..|+|.|.|.|+|.+|...
T Consensus 19 ~~~v~l~C~a-~G~P~P~i~W~k~~~~i~~~-~~~~~~~~---------g~L~I~~~~~~~D~G~Y~C~A~N~~G~~~ 85 (93)
T cd05849 19 EGKVSVNCRA-RANPFPIYKWRKNNLDIDLT-NDRYSMVG---------GNLVINNPDKYKDAGRYVCIVSNIYGKVR 85 (93)
T ss_pred CCeEEEeCcC-ccCCCCEEEEEECCEEccCC-CCeEEEEC---------CEEEECcCCcCCCCEEEEEEEEeCcceEE
Confidence 4479999999 89999999999999887422 23443322 257777764 6899999999999999874
No 106
>cd05853 Ig6_Contactin-4 Sixth Ig domain of contactin-4. Ig6_Contactin-4: sixth Ig domain of the neural cell adhesion molecule contactin-4. Contactins are neural cell adhesion molecules, and are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. Highest expresson of contactin-4 is in testes, thyroid, small intestine, uterus and brain. Contactin-4 plays a role in the response of neuroblastoma cells to differentiating agents, such as retinoids. The contactin 4 gene is associated with cerebellar degeneration in spinocerebellar ataxia type 16.
Probab=99.51 E-value=5.8e-14 Score=86.08 Aligned_cols=74 Identities=12% Similarity=0.292 Sum_probs=54.9
Q ss_pred CceEEEeeCCC-CCCCCeEEEeEcCeEecc-CCCceEEecCCCccccccccccccccccccccceeEEEEeecccccccC
Q psy15128 214 ETALLECGPPK-GQPEPTLHWKKNGQFIDL-ESSKRVSILGDPWFDSRRSRSIFGSVLGALSDDQWKLIAKNIRNQQQHG 291 (292)
Q Consensus 214 ~~~~l~C~~~~-~~p~~~~~W~~~g~~~~~-~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~a~n~~g~~~~~ 291 (292)
+++.|.|.|.. +.+++.|.|++||++|.. ..+.++...... .....|.|.+++..|+|+|+|.|+|.+++.+.+
T Consensus 1 ~~~~l~C~v~~d~~l~~~~~W~~dg~~i~~~~~~~~~~~~~~~----~~~~~L~I~nv~~~dsG~YtC~a~n~~~~~~a~ 76 (85)
T cd05853 1 ESIVLPCQVSHDHSLDIVFTWSFNGHLIDFQKDGDHFERVGGQ----DSAGDLMIRSIQLKHAGKYVCMVQTSVDKLSAA 76 (85)
T ss_pred CcEEEEEEeccCCCCCcEEEEEECCEECcccCCCccEEEeccC----CCCCcEEEecCCHHHCEEEEEEEEcccCceEEE
Confidence 47899999843 356789999999999963 233344432211 112269999999999999999999999998764
No 107
>cd05857 Ig2_FGFR Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. Ig2_FGFR: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three IG-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin sulfate proteoglycans.
Probab=99.51 E-value=2e-13 Score=85.29 Aligned_cols=80 Identities=24% Similarity=0.413 Sum_probs=61.4
Q ss_pred cEEecCCcEEEEEEEeeeCCCeeEEEECCeEEeeccCCCcceeE-EeeecEEEEccCCCCCCeEEEEEEEeCCcCeeEEE
Q psy15128 46 QKVGLNGIASFQCVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLH-VTQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRA 124 (292)
Q Consensus 46 ~~~~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~-~~~~~~l~i~~~~~~d~g~Y~C~~~~~~~~~~~~~ 124 (292)
..+.+|+.+.|.|.+.|.|.+.+.|+|++..+... ....... ......|.|.++..+|+|.|+|.+.|..|.....+
T Consensus 4 ~~v~~G~~~~L~C~~~g~P~p~i~W~k~g~~l~~~--~~~~~~~~~~~~~~l~i~~~~~~D~G~Y~C~a~N~~G~~~~~~ 81 (85)
T cd05857 4 HAVPAANTVKFRCPAAGNPTPTMRWLKNGKEFKQE--HRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSINHTY 81 (85)
T ss_pred EEcCCCCEEEEEEEcCCCCCCEEEEEECCEECCCC--CceeeeEEeCCceEEEEccCCcccCEEEEEEEEeCCCEEEEEE
Confidence 35678999999999999999999999999876321 1111111 12244799999999999999999999999877776
Q ss_pred EEE
Q psy15128 125 FLQ 127 (292)
Q Consensus 125 ~l~ 127 (292)
.|.
T Consensus 82 ~l~ 84 (85)
T cd05857 82 HLD 84 (85)
T ss_pred EEE
Confidence 664
No 108
>cd05858 Ig3_FGFR-2 Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor 2 (FGFR2). Ig3_FGFR-2-like; domain similar to the third immunoglobulin (Ig)-like domain of human fibroblast growth factor receptor 2 (FGFR2). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs. FGFR2 is required for male sex determination.
Probab=99.51 E-value=5.5e-14 Score=88.61 Aligned_cols=78 Identities=15% Similarity=0.264 Sum_probs=54.1
Q ss_pred CCceEEEeeCCCCCCCCeEEEeEc----CeEeccCCCceEEecCCCc--cccccccccccccccccccceeEEEEeeccc
Q psy15128 213 GETALLECGPPKGQPEPTLHWKKN----GQFIDLESSKRVSILGDPW--FDSRRSRSIFGSVLGALSDDQWKLIAKNIRN 286 (292)
Q Consensus 213 g~~~~l~C~~~~~~p~~~~~W~~~----g~~~~~~~~~~~~~~~~~~--~~~~~~~~l~i~~~~~~~~g~y~C~a~n~~g 286 (292)
|+.+.|.|.+ .+.|.|.|+|+++ |..+.........+..... ........|.|..++.+|+|.|+|+|.|..|
T Consensus 1 G~~v~L~C~~-~g~P~P~i~W~k~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G 79 (90)
T cd05858 1 GSTVEFVCKV-YSDAQPHIQWLKHVEKNGSKYGPDGLPYVTVLKTAGVNTTDKEMEVLYLRNVTFEDAGEYTCLAGNSIG 79 (90)
T ss_pred CCeEEEEEEE-ecCCCCEEEEEEecccCCcEeCCCCCeeEEEeccCCceecCCceeEEEEccCCHHHCEEEEEEEEeCCC
Confidence 6889999998 8999999999984 4444322111222211111 1111224699999999999999999999999
Q ss_pred ccccC
Q psy15128 287 QQQHG 291 (292)
Q Consensus 287 ~~~~~ 291 (292)
.+.++
T Consensus 80 ~~~~~ 84 (90)
T cd05858 80 ISHHS 84 (90)
T ss_pred cccce
Confidence 98754
No 109
>cd05875 Ig6_hNeurofascin_like Sixth immunoglobulin (Ig)-like domain of human neurofascin (NF). Ig6_hNeurofascin_like: the sixth immunoglobulin (Ig)-like domain of human neurofascin (NF). NF belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and a cytoplasmic domain. NF has many alternatively spliced isoforms having different temporal expression patterns during development. NF participates in axon subcellular targeting and synapse formation, however little is known of the functions of the different isoforms.
Probab=99.51 E-value=7e-14 Score=84.97 Aligned_cols=66 Identities=27% Similarity=0.564 Sum_probs=48.5
Q ss_pred eEEEeeCCCCCCCCeEEEeEcCeEeccCCCceEEecCCCcccccccccccccccc----ccccceeEEEEeecccccc
Q psy15128 216 ALLECGPPKGQPEPTLHWKKNGQFIDLESSKRVSILGDPWFDSRRSRSIFGSVLG----ALSDDQWKLIAKNIRNQQQ 289 (292)
Q Consensus 216 ~~l~C~~~~~~p~~~~~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~----~~~~g~y~C~a~n~~g~~~ 289 (292)
+.|.|.+ .|.|.|.++|+++|.++....+.++.+... ...|.|..+. ..|+|.|+|.|+|..|.+.
T Consensus 1 ~~l~C~~-~G~P~P~v~W~k~g~~~~~~~~~~~~~~~~-------~~~L~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~ 70 (77)
T cd05875 1 IIIECEA-KGNPVPTFQWTRNGKFFNVAKDPRVSMRRR-------SGTLVIDFSGGGRPEDYEGEYQCFARNNLGTAL 70 (77)
T ss_pred CEEEEec-cccCCCEEEEEECCEEccCcCCCcEEEeCC-------CceEEEeccCCCCCCCCCEEEEEEEEeccceEE
Confidence 4799999 899999999999999875444555544222 1246666543 2469999999999999875
No 110
>cd05874 Ig6_NrCAM Sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule). Ig6_NrCAM: sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and an intracellular domain. NrCAM is primarily expressed in the nervous system.
Probab=99.51 E-value=7.1e-14 Score=84.96 Aligned_cols=66 Identities=20% Similarity=0.560 Sum_probs=47.5
Q ss_pred eEEEeeCCCCCCCCeEEEeEcCeEeccCCCceEEecCCCccccccccccccccccc----cccceeEEEEeecccccc
Q psy15128 216 ALLECGPPKGQPEPTLHWKKNGQFIDLESSKRVSILGDPWFDSRRSRSIFGSVLGA----LSDDQWKLIAKNIRNQQQ 289 (292)
Q Consensus 216 ~~l~C~~~~~~p~~~~~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~----~~~g~y~C~a~n~~g~~~ 289 (292)
+.|.|.+ .|.|.|.++|+++|.++......++.+.... ..|.|..+.. .|+|.|+|.|+|.+|.+.
T Consensus 1 ~~l~C~a-~G~P~P~i~W~k~g~~l~~~~~~~~~~~~~~-------g~l~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~ 70 (77)
T cd05874 1 IVIQCEA-KGKPPPSFSWTRNGTHFDIDKDPKVTMKPNT-------GTLVINIMNGEKAEAYEGVYQCTARNERGAAV 70 (77)
T ss_pred CEEEeeC-cccCCCeEEEEECCeECCCcCCCCEEEeCCC-------ceEEEeccccCCCCCCCEEEEEEEEcCCCeEE
Confidence 5799998 9999999999999998753343344332211 1355554443 378999999999999864
No 111
>cd04974 Ig3_FGFR Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Ig3_FGFR: third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs.
Probab=99.50 E-value=7.7e-14 Score=87.84 Aligned_cols=78 Identities=14% Similarity=0.224 Sum_probs=52.3
Q ss_pred CCceEEEeeCCCCCCCCeEEEeEcC----eEeccCCCceEEecCCC--ccccccccccccccccccccceeEEEEeeccc
Q psy15128 213 GETALLECGPPKGQPEPTLHWKKNG----QFIDLESSKRVSILGDP--WFDSRRSRSIFGSVLGALSDDQWKLIAKNIRN 286 (292)
Q Consensus 213 g~~~~l~C~~~~~~p~~~~~W~~~g----~~~~~~~~~~~~~~~~~--~~~~~~~~~l~i~~~~~~~~g~y~C~a~n~~g 286 (292)
|+.++|.|.+ .|.|.|.|+|+|++ ..+.............. .........|.|..+..+|+|.|+|.|.|..|
T Consensus 1 G~~v~l~C~v-~g~P~P~i~W~k~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G 79 (90)
T cd04974 1 GSDVEFHCKV-YSDAQPHIQWLKHVEVNGSKYGPDGLPYVTVLKVAGINTTDNESEVLYLRNVSFDDAGEYTCLAGNSIG 79 (90)
T ss_pred CCcEEEEEEE-eCCCCCeEEEEEecccCCceeCCCCCceEEEEEecCCcccccccceEEEeccccccCcEEEEEeecccC
Confidence 6889999999 89999999999963 33321111111111110 00011223688889999999999999999999
Q ss_pred ccccC
Q psy15128 287 QQQHG 291 (292)
Q Consensus 287 ~~~~~ 291 (292)
.+..+
T Consensus 80 ~~~~s 84 (90)
T cd04974 80 PSHHS 84 (90)
T ss_pred cccCC
Confidence 98653
No 112
>cd05725 Ig3_Robo Third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Ig3_Robo: domain similar to the third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni
Probab=99.50 E-value=1.8e-13 Score=81.66 Aligned_cols=68 Identities=29% Similarity=0.650 Sum_probs=54.9
Q ss_pred EEEEEEEeeeCCCeeEEEECCeEEeeccCCCcceeEEeeecEEEEccCCCCCCeEEEEEEEeCCcCeeEEEEEE
Q psy15128 54 ASFQCVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQ 127 (292)
Q Consensus 54 ~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~~~~~~~~~l~ 127 (292)
++|.|.+.|.|.|.+.|+|++..+. ..+........|.|.+++.+|+|.|+|.+.|..|.....+.|.
T Consensus 1 v~l~C~~~g~P~p~v~W~k~~~~~~------~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~ 68 (69)
T cd05725 1 VEFQCEVGGDPVPTVLWRKEDGELP------KGRAEILDDKSLKIRNVTAGDEGSYTCEAENMVGKIEASASLT 68 (69)
T ss_pred CEEEEECccCCCCEEEEEECCccCC------CCcEEEeeCCEEEECcCChhHCEEEEEEEEcCCCcEEEEEEEE
Confidence 4799999999999999999976542 1223334567899999999999999999999999877766654
No 113
>cd05725 Ig3_Robo Third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Ig3_Robo: domain similar to the third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni
Probab=99.49 E-value=5.8e-14 Score=83.85 Aligned_cols=64 Identities=23% Similarity=0.397 Sum_probs=50.7
Q ss_pred eEEEeeCCCCCCCCeEEEeEcCeEeccCCCceEEecCCCccccccccccccccccccccceeEEEEeecccccccC
Q psy15128 216 ALLECGPPKGQPEPTLHWKKNGQFIDLESSKRVSILGDPWFDSRRSRSIFGSVLGALSDDQWKLIAKNIRNQQQHG 291 (292)
Q Consensus 216 ~~l~C~~~~~~p~~~~~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~a~n~~g~~~~~ 291 (292)
++|.|.+ .|.|+|.+.|++++..+. ..+.....+ ..|.|..+..+|+|.|+|.|.|..|....+
T Consensus 1 v~l~C~~-~g~P~p~v~W~k~~~~~~---~~~~~~~~~--------~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~ 64 (69)
T cd05725 1 VEFQCEV-GGDPVPTVLWRKEDGELP---KGRAEILDD--------KSLKIRNVTAGDEGSYTCEAENMVGKIEAS 64 (69)
T ss_pred CEEEEEC-ccCCCCEEEEEECCccCC---CCcEEEeeC--------CEEEECcCChhHCEEEEEEEEcCCCcEEEE
Confidence 5799998 899999999999987663 223333222 258899999999999999999999987643
No 114
>cd05848 Ig1_Contactin-5 First Ig domain of contactin-5. Ig1_Contactin-5: First Ig domain of the neural cell adhesion molecule contactin-5. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains, anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. In rats, a lack of contactin-5 (NB-2) results in an impairment of the neuronal activity in the auditory system. Contactin-5 is expressed specifically in the postnatal nervous system, peaking at about 3 weeks postnatal. Contactin-5 is highly expressed in the adult human brain in the occipital lobe and in the amygdala; lower levels of expression have been detected in the corpus callosum, caudate nucleus, and spinal cord.
Probab=99.49 E-value=8.6e-13 Score=83.63 Aligned_cols=81 Identities=26% Similarity=0.441 Sum_probs=59.9
Q ss_pred CcEEeCCCccEEe---cCCcEEEEEEEeeeCCCeeEEEECCeEEeeccCCCcceeEEeeecEEEEccCC-CCCCeEEEEE
Q psy15128 37 PSFVVRPQDQKVG---LNGIASFQCVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQ-KEDAGFFVCS 112 (292)
Q Consensus 37 p~~~~~~~~~~~~---~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~-~~d~g~Y~C~ 112 (292)
|.++..|....+. +|+.+.|.|.+.|.|.|.+.|++++..+.... ..+. ...++.|.|.++. .+|.|.|+|.
T Consensus 2 P~f~~~p~~~~~~~~~~g~~v~l~C~~~G~P~P~i~W~k~g~~l~~~~---~~~~-~~~~g~L~i~~~~~~~D~G~Y~C~ 77 (94)
T cd05848 2 PVFVQEPDDAIFPTDSDEKKVILNCEARGNPVPTYRWLRNGTEIDTES---DYRY-SLIDGNLIISNPSEVKDSGRYQCL 77 (94)
T ss_pred CeeEECCCcEEccCCCCCCEEEEEEEeeecCCCEEEEEECCeECccCC---CceE-EeeCCeEEEccCCccCcCEEEEEE
Confidence 4556666665443 46899999999999999999999998763211 1122 2235689998875 6999999999
Q ss_pred EEeCCcCee
Q psy15128 113 ALSVAGSTT 121 (292)
Q Consensus 113 ~~~~~~~~~ 121 (292)
|.|..|...
T Consensus 78 A~N~~G~~~ 86 (94)
T cd05848 78 ATNSIGSIL 86 (94)
T ss_pred EEcCCCeEE
Confidence 999988653
No 115
>cd05760 Ig2_PTK7 Second immunoglobulin (Ig)-like domain of protein tyrosine kinase (PTK) 7, also known as CCK4. Ig2_PTK7: domain similar to the second immunoglobulin (Ig)-like domain in protein tyrosine kinase (PTK) 7, also known as CCK4. PTK7 is a subfamily of the receptor protein tyrosine kinase family, and is referred to as an RPTK-like molecule. RPTKs transduce extracellular signals across the cell membrane, and play important roles in regulating cell proliferation, migration, and differentiation. PTK7 is organized as an extracellular portion having seven Ig-like domains, a single transmembrane region, and a cytoplasmic tyrosine kinase-like domain. PTK7 is considered a pseudokinase as it has several unusual residues in some of the highly conserved tyrosine kinase (TK) motifs; it is predicted to lack TK activity. PTK7 may function as a cell-adhesion molecule. PTK7 mRNA is expressed at high levels in placenta, melanocytes, liver, lung, pancreas, and kidney. PTK7 is overexpressed in s
Probab=99.49 E-value=5.7e-13 Score=81.18 Aligned_cols=72 Identities=22% Similarity=0.523 Sum_probs=54.1
Q ss_pred EEEEEEEeeeCCCeeEEEECCeEEeeccCCCcceeE-EeeecEEEEccCCCCCCeEEEEEEEeCCcCeeEEEEEEEE
Q psy15128 54 ASFQCVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLH-VTQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVT 129 (292)
Q Consensus 54 ~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~-~~~~~~l~i~~~~~~d~g~Y~C~~~~~~~~~~~~~~l~v~ 129 (292)
++|.|.+.|.|.|.+.|+|++..+... . .... ....+.|.|.++..+|+|.|.|.+.|..|.......+++.
T Consensus 1 v~L~C~~~g~P~p~v~W~k~g~~l~~~--~--~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~s~~~~~l~ 73 (77)
T cd05760 1 VTLRCHIDGHPRPTYQWFRDGTPLSDG--Q--GNYSVSSKERTLTLRSAGPDDSGLYYCCAHNAFGSVCSSQNFTLS 73 (77)
T ss_pred CEEEEEeeecCCCcEEEEECCEECCCC--C--ccEEEeCCCCEEEEeeCCcccCEEEEEEEEeCCCeEeeCceEEEE
Confidence 479999999999999999998865321 1 1111 2234589999999999999999999998876544444443
No 116
>cd05763 Ig_1 Subgroup of the immunoglobulin (Ig) superfamily. Ig_1: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=99.49 E-value=7e-14 Score=85.00 Aligned_cols=68 Identities=21% Similarity=0.402 Sum_probs=50.5
Q ss_pred eEEEeeCCCCCCCCeEEEeEcCeEe-ccCCCceEEecCCCccccccccccccccccccccceeEEEEeecccccccC
Q psy15128 216 ALLECGPPKGQPEPTLHWKKNGQFI-DLESSKRVSILGDPWFDSRRSRSIFGSVLGALSDDQWKLIAKNIRNQQQHG 291 (292)
Q Consensus 216 ~~l~C~~~~~~p~~~~~W~~~g~~~-~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~a~n~~g~~~~~ 291 (292)
++|.|.+ .|.|.|.++|+++|... +.....++..... ...|.|..+..+|+|.|.|.|.|..|..+.+
T Consensus 1 a~l~C~~-~G~P~P~v~W~k~~~~~~~~~~~~~~~~~~~-------~~~L~I~~~~~~D~G~Y~C~A~N~~G~~~~~ 69 (75)
T cd05763 1 ARLECAA-TGHPTPQIAWQKDGGTDFPAARERRMHVMPE-------DDVFFIVDVKIEDTGVYSCTAQNTAGSISAN 69 (75)
T ss_pred CEeEeec-ccccCCEEEEEeCCCccCCcccccceEEecC-------CCEEEEeeCCcccCEEEEEEEEcCCCEEEee
Confidence 4799998 89999999999998643 2222223333222 1257889999999999999999999987653
No 117
>cd05765 Ig_3 Subgroup of the immunoglobulin (Ig) superfamily. Ig_3: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=99.49 E-value=3.6e-13 Score=83.37 Aligned_cols=77 Identities=31% Similarity=0.568 Sum_probs=56.7
Q ss_pred CCcEEEEEEEeeeCCCeeEEEECCe---EEeeccCCCcceeEEeeecEEEEccCCCCCCeEEEEEEEeCCcCeeEEEEEE
Q psy15128 51 NGIASFQCVAEGSPLPSVFWTQEGS---QVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQ 127 (292)
Q Consensus 51 g~~~~l~C~~~~~~~~~v~W~~~~~---~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~~~~~~~~~l~ 127 (292)
|+.+.|.|.+.|.|.|.+.|+|++. .....+............+.|.|.++..+|+|.|+|.+.|..|.....+.|.
T Consensus 1 G~~v~l~C~~~g~P~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~ 80 (81)
T cd05765 1 GETASFHCDVTGRPPPEITWEKQVHGKENLIMRPNHVRGNVVVTNIGQLVIYNAQPQDAGLYTCTARNSGGLLRANFPLS 80 (81)
T ss_pred CCcEEEEeeccccCCCcEEEEecCCCCcceeecCCcccCCEEEccccEEEEccCCcccCEEEEEEEecCCceEEEEEEEe
Confidence 6889999999999999999999742 1111111111222233456899999999999999999999999877766654
No 118
>cd05736 Ig2_Follistatin_like Second immunoglobulin (Ig)-like domain of a follistatin-like molecule encoded by the Mahya gene and similar proteins. Ig2_Follistatin_like: domain similar to the second immunoglobulin (Ig)-like domain found in a follistatin-like molecule encoded by the CNS-related Mahya gene. Mahya genes have been retained in certain Bilaterian branches during evolution. They are conserved in Hymenoptera and Deuterostomes, but are absent from other metazoan species such as fruit fly and nematode. Mahya proteins are secretory, with a follistatin-like domain (Kazal-type serine/threonine protease inhibitor domain and EF-hand calcium-binding domain), two Ig-like domains, and a novel C-terminal domain. Mahya may be involved in learning and memory and in processing of sensory information in Hymenoptera and vertebrates. Follistatin is a secreted, multidomain protein that binds activins with high affinity and antagonizes their signaling.
Probab=99.49 E-value=8.5e-14 Score=84.90 Aligned_cols=67 Identities=28% Similarity=0.419 Sum_probs=53.2
Q ss_pred eEEEeeCCCCCCCCeEEEeEcCeEeccCCCceEEecCCCccccccccccccccccccccceeEEEEeeccccccc
Q psy15128 216 ALLECGPPKGQPEPTLHWKKNGQFIDLESSKRVSILGDPWFDSRRSRSIFGSVLGALSDDQWKLIAKNIRNQQQH 290 (292)
Q Consensus 216 ~~l~C~~~~~~p~~~~~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~a~n~~g~~~~ 290 (292)
+.|.|.+ .|.|+|.+.|+++++.+......++....++ ..|.|..+..+|.|.|+|.|.|..|.++.
T Consensus 1 ~~L~C~v-~g~P~p~v~W~k~~~~l~~~~~~~~~~~~~~-------~~l~I~~~~~~D~G~Y~C~a~N~~G~~~~ 67 (76)
T cd05736 1 ASLRCHA-EGIPLPRLTWLKNGMDITPKLSKQLTLIANG-------SELHISNVRYEDTGAYTCIAKNEAGVDED 67 (76)
T ss_pred CEeEeEe-eecCCCEEEEEECCEECCCCCCccEEEeCCC-------CEEEECcCCcccCEEEEEEEEcCCCCcce
Confidence 4689998 8999999999999998864433444443322 25889999999999999999999998864
No 119
>cd04973 Ig1_FGFR First immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Ig1_FGFR: The first immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for all FGFs.
Probab=99.49 E-value=5e-13 Score=81.90 Aligned_cols=77 Identities=18% Similarity=0.370 Sum_probs=58.9
Q ss_pred CccEEecCCcEEEEEEEeeeCCCeeEEEECCeEEeeccCCCcceeEEeeecEEEEccCCCCCCeEEEEEEEeCCcCeeEE
Q psy15128 44 QDQKVGLNGIASFQCVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVR 123 (292)
Q Consensus 44 ~~~~~~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~~~~~~~ 123 (292)
....+.+|+.+.|.|.+.+. .+.+.|+|++..+.. ..+... ....|.|.+++.+|+|.|+|.+.|..|.....
T Consensus 2 ~~~~~~~G~~v~l~C~~~~~-~~~v~W~k~g~~l~~-----~~~~~~-~~~~L~I~~~~~~DsG~Y~C~a~n~~g~~~~~ 74 (79)
T cd04973 2 ESYSAHPGDLLQLRCRLRDD-VQSINWTKDGVQLGE-----NNRTRI-TGEEVQIKDAVPRDSGLYACVTSSPSGSDTTY 74 (79)
T ss_pred CcEEecCCCCEEEEEEecCC-CceEEEeeCCcCCCC-----CceEEE-eCCEEEECCCChhhCEEEEEEEeCCCCcccEE
Confidence 45678899999999999885 568999999976631 112222 24589999999999999999999988776655
Q ss_pred EEEE
Q psy15128 124 AFLQ 127 (292)
Q Consensus 124 ~~l~ 127 (292)
..+.
T Consensus 75 ~~v~ 78 (79)
T cd04973 75 FSVN 78 (79)
T ss_pred EEEe
Confidence 5443
No 120
>cd05724 Ig2_Robo Second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Ig2_Robo: domain similar to the second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antago
Probab=99.49 E-value=5.4e-13 Score=83.63 Aligned_cols=76 Identities=26% Similarity=0.610 Sum_probs=60.2
Q ss_pred CCCccEEecCCcEEEEEEE-eeeCCCeeEEEECCeEEeeccCCCcceeEEeeecEEEEccCCCCCCeEEEEEEEeCCcCe
Q psy15128 42 RPQDQKVGLNGIASFQCVA-EGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGST 120 (292)
Q Consensus 42 ~~~~~~~~~g~~~~l~C~~-~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~~~~ 120 (292)
.|....+.+|+++.|.|.+ .+.|.+.+.|++++..+... ..+.....++.|.|.+++.+|+|.|+|.+.|..|..
T Consensus 2 ~p~~~~~~~G~~v~l~C~~~~g~p~p~i~W~k~g~~~~~~----~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~ 77 (86)
T cd05724 2 EPSDTQVAVGEMAVLECSPPRGHPEPTVSWRKDGQPLNLD----NERVRIVDDGNLLIAEARKSDEGTYKCVATNMVGER 77 (86)
T ss_pred CCccEEEeCCCCEEEEEECCCCCCCCEEEEEECCEECCCC----CCCEEEccCCEEEEeECCcccCEEEEEEEEeccCce
Confidence 3456778899999999998 68899999999998876421 122333346789999999999999999999988765
Q ss_pred e
Q psy15128 121 T 121 (292)
Q Consensus 121 ~ 121 (292)
.
T Consensus 78 ~ 78 (86)
T cd05724 78 E 78 (86)
T ss_pred e
Confidence 3
No 121
>cd05856 Ig2_FGFRL1-like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1). Ig2_FGFRL1-like: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1). FGFRL1 is comprised of a signal peptide, three extracellular Ig-like modules, a transmembrane segment, and a short intracellular domain. FGFRL1 is expressed preferentially in skeletal tissues. Similar to FGF receptors, the expressed protein interacts specifically with heparin and with FGF2. FGFRL1 does not have a protein tyrosine kinase domain at its C terminus; neither does its cytoplasmic domain appear to interact with a signaling partner. It has been suggested that FGFRL1 may not have any direct signaling function, but instead acts as a decoy receptor trapping FGFs and preventing them from binding other receptors.
Probab=99.49 E-value=3.4e-13 Score=83.77 Aligned_cols=77 Identities=19% Similarity=0.374 Sum_probs=58.7
Q ss_pred EEecCCcEEEEEEEeeeCCCeeEEEECCeEEeeccCCCcceeEEeeecEEEEccCCCCCCeEEEEEEEeCCcCeeEEEEE
Q psy15128 47 KVGLNGIASFQCVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRAFL 126 (292)
Q Consensus 47 ~~~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~~~~~~~~~l 126 (292)
....|+.+.|.|.+.+.|.|.+.|++++..+..... .........|.|.+++.+|+|.|+|.+.|..|.......|
T Consensus 5 ~~~~G~~v~L~C~~~g~p~p~i~W~k~~~~~~~~~~----~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~~v 80 (82)
T cd05856 5 ARPVGSSVRLKCVASGNPRPDITWLKDNKPLTPTEI----GESRKKKWTLSLKNLKPEDSGKYTCHVSNRAGEINATYKV 80 (82)
T ss_pred eccCCCeEEEEEEeeEeCCCcEEEEECCcCCcCCcc----ceecCceEEEEEccCChhhCEEEEEEEEcCCccEEEEEEE
Confidence 456799999999999999999999999876532111 1111224579999999999999999999998876655544
Q ss_pred E
Q psy15128 127 Q 127 (292)
Q Consensus 127 ~ 127 (292)
.
T Consensus 81 ~ 81 (82)
T cd05856 81 D 81 (82)
T ss_pred e
Confidence 3
No 122
>cd05764 Ig_2 Subgroup of the immunoglobulin (Ig) superfamily. Ig_2: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=99.48 E-value=5.4e-13 Score=80.91 Aligned_cols=73 Identities=29% Similarity=0.495 Sum_probs=56.1
Q ss_pred CCcEEEEEEEeeeCCCeeEEEECCeEEeeccCCCcceeEEeeecEEEEccCCCCCCeEEEEEEEeCCcCeeEEEEEE
Q psy15128 51 NGIASFQCVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQ 127 (292)
Q Consensus 51 g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~~~~~~~~~l~ 127 (292)
|+.+.|.|.+.|.|.|.+.|++++..... . ..+......+.|.|..+..+|.|.|+|.+.|..|.....+.|.
T Consensus 1 G~~~~l~C~~~g~P~p~v~W~~~~~~~~~-~---~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~ 73 (74)
T cd05764 1 GQRATLRCKARGDPEPAIHWISPDGKLIS-N---SSRTLVYDNGTLDILITTVKDTGSFTCIASNAAGEATATVELH 73 (74)
T ss_pred CCeEEEEEEccCcCCCEEEEEeCCCEEec-C---CCeEEEecCCEEEEEECChhhCEEEEEEEECCCCeEEEEEEEE
Confidence 67899999999999999999985433321 1 1223334567899999999999999999999998876666554
No 123
>cd04977 Ig1_NCAM-1_like First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1 and similar proteins. Ig1_NCAM-1 like: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the s
Probab=99.48 E-value=1.1e-13 Score=87.33 Aligned_cols=78 Identities=15% Similarity=0.365 Sum_probs=56.8
Q ss_pred CcceEEeCCCceEEEeeCCCCCCCCeEEEeE-cCeEeccCCCceEEecCCCccccccccccccccccccccceeEEEEee
Q psy15128 205 PKDTRVASGETALLECGPPKGQPEPTLHWKK-NGQFIDLESSKRVSILGDPWFDSRRSRSIFGSVLGALSDDQWKLIAKN 283 (292)
Q Consensus 205 ~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~a~n 283 (292)
|....+..|+.+.|.|.+ .|.|+ .+.|++ ++..+.. ..++.....+ .....|.|..+..+|+|.|+|.|.|
T Consensus 7 p~~~~v~~G~~~~l~C~~-~G~p~-~i~W~~~~~~~~~~--~~~~~~~~~~----~~~~~L~I~~v~~~D~G~Y~C~A~N 78 (92)
T cd04977 7 PSQGEISVGESKFFLCQV-IGEPK-DISWFSPNGEKLVT--QQQISVVQND----DVRSTLTIYNANIEDAGIYKCVATD 78 (92)
T ss_pred cCcEEECCCCeEEEEEEe-EeeCC-eEEEECCCCCEecc--CCCEEEEeCC----CCEEEEEEecCCcccCEEEEEEEEc
Confidence 456788999999999998 77774 999998 5666642 2222222121 1223689999999999999999999
Q ss_pred ccccccc
Q psy15128 284 IRNQQQH 290 (292)
Q Consensus 284 ~~g~~~~ 290 (292)
..|....
T Consensus 79 ~~g~~~~ 85 (92)
T cd04977 79 AKGTESE 85 (92)
T ss_pred CCCCcce
Confidence 9876543
No 124
>cd05750 Ig_Pro_neuregulin Immunoglobulin (Ig)-like domain in neuregulins (NRGs). Ig_Pro_neuregulin: immunoglobulin (Ig)-like domain in neuregulins (NRGs). NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. There are four members of the neuregulin gene family (NRG1, -2, -3, and -4). The NRG-1 protein, binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. The other NRGs proteins bind one or the other or both of these ErbBs. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates processes such as target cell differentiation, and Schwann cell surv
Probab=99.48 E-value=9.6e-14 Score=84.61 Aligned_cols=70 Identities=14% Similarity=0.309 Sum_probs=52.3
Q ss_pred eEEEeeCCCC-CCCCeEEEeEcCeEeccCCCceE-EecCCCccccccccccccccccccccceeEEEEeecccccccC
Q psy15128 216 ALLECGPPKG-QPEPTLHWKKNGQFIDLESSKRV-SILGDPWFDSRRSRSIFGSVLGALSDDQWKLIAKNIRNQQQHG 291 (292)
Q Consensus 216 ~~l~C~~~~~-~p~~~~~W~~~g~~~~~~~~~~~-~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~a~n~~g~~~~~ 291 (292)
+.|.|.+ .+ .|.|.+.|+++|+++........ .+... .....|.|..+..+|+|.|+|.|+|..|.++.+
T Consensus 1 ~~l~C~~-~g~~P~p~~~W~k~g~~l~~~~~~~~~~~~~~-----~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~ 72 (75)
T cd05750 1 LVLKCEA-TSEYPSLRFKWFKDGKELNRKNKPRNIKIRNK-----KKNSELQINKAKLADSGEYTCVVENILGNDTVT 72 (75)
T ss_pred CEEEEEc-cCCCCCceEEEEcCCeeccccCCcceEEEEec-----CceEEEEEccCCcccCeEEEEEEEEcCCceeEE
Confidence 4799999 66 99999999999998864332221 11111 122368899999999999999999999998754
No 125
>cd05856 Ig2_FGFRL1-like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1). Ig2_FGFRL1-like: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1). FGFRL1 is comprised of a signal peptide, three extracellular Ig-like modules, a transmembrane segment, and a short intracellular domain. FGFRL1 is expressed preferentially in skeletal tissues. Similar to FGF receptors, the expressed protein interacts specifically with heparin and with FGF2. FGFRL1 does not have a protein tyrosine kinase domain at its C terminus; neither does its cytoplasmic domain appear to interact with a signaling partner. It has been suggested that FGFRL1 may not have any direct signaling function, but instead acts as a decoy receptor trapping FGFs and preventing them from binding other receptors.
Probab=99.48 E-value=5e-14 Score=87.56 Aligned_cols=74 Identities=14% Similarity=0.224 Sum_probs=57.1
Q ss_pred ceEEeCCCceEEEeeCCCCCCCCeEEEeEcCeEeccCCCceEEecCCCccccccccccccccccccccceeEEEEeeccc
Q psy15128 207 DTRVASGETALLECGPPKGQPEPTLHWKKNGQFIDLESSKRVSILGDPWFDSRRSRSIFGSVLGALSDDQWKLIAKNIRN 286 (292)
Q Consensus 207 ~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~a~n~~g 286 (292)
...+..|+.+.|.|.+ .+.|.|.+.|+++|..+..... .... .....|.|..+..+|+|.|+|.|.|..|
T Consensus 3 ~~~~~~G~~v~L~C~~-~g~p~p~i~W~k~~~~~~~~~~--~~~~-------~~~~~L~i~~v~~~D~G~Y~C~a~N~~G 72 (82)
T cd05856 3 VIARPVGSSVRLKCVA-SGNPRPDITWLKDNKPLTPTEI--GESR-------KKKWTLSLKNLKPEDSGKYTCHVSNRAG 72 (82)
T ss_pred ceeccCCCeEEEEEEe-eEeCCCcEEEEECCcCCcCCcc--ceec-------CceEEEEEccCChhhCEEEEEEEEcCCc
Confidence 3456789999999998 8899999999999987742211 1111 1123588999999999999999999999
Q ss_pred cccc
Q psy15128 287 QQQH 290 (292)
Q Consensus 287 ~~~~ 290 (292)
..+.
T Consensus 73 ~~~~ 76 (82)
T cd05856 73 EINA 76 (82)
T ss_pred cEEE
Confidence 8754
No 126
>cd05895 Ig_Pro_neuregulin-1 Immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1. Ig_Pro_neuregulin-1: immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1. There are many NRG-1 isoforms which arise from the alternative splicing of mRNA. NRG-1 belongs to the neuregulin gene family, which is comprised of four genes. This group represents NRG-1. NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, and heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. The NRG-1 protein binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates process
Probab=99.48 E-value=7.2e-14 Score=85.17 Aligned_cols=71 Identities=17% Similarity=0.302 Sum_probs=52.4
Q ss_pred eEEEeeCCCCCCCCeEEEeEcCeEeccCCC--ceEEecCCCccccccccccccccccccccceeEEEEeecccccccC
Q psy15128 216 ALLECGPPKGQPEPTLHWKKNGQFIDLESS--KRVSILGDPWFDSRRSRSIFGSVLGALSDDQWKLIAKNIRNQQQHG 291 (292)
Q Consensus 216 ~~l~C~~~~~~p~~~~~W~~~g~~~~~~~~--~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~a~n~~g~~~~~ 291 (292)
+.|.|.+..+.|.+.+.|+++|+++..... .++..... .....|.|..+...|+|.|+|.|+|..|.++.+
T Consensus 1 ~~L~C~a~~~~p~~~~~W~~~g~~i~~~~~~~~~~~~~~~-----~~~~~L~I~~~~~~DsG~Y~C~a~N~~g~~~~~ 73 (76)
T cd05895 1 LVLRCETVSEYPSLRFKWFKNGKEIGAKNKPDNKIKIRKK-----KKSSELQISKASLADNGEYKCMVSSKLGNDSVT 73 (76)
T ss_pred CEEEEecccCCCCCceEEEECCcccccCCCCCceEEEEeC-----CcEEEEEECcCCcccCEEEEEEEEeCCCceeEE
Confidence 479999855678889999999998853221 22222111 122368899999999999999999999998765
No 127
>cd05850 Ig1_Contactin-2 First Ig domain of contactin-2. Ig1_Contactin-2: First Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c
Probab=99.47 E-value=2.3e-12 Score=81.76 Aligned_cols=81 Identities=25% Similarity=0.454 Sum_probs=59.9
Q ss_pred CcEEeCCCccEEecC---CcEEEEEEEeeeCCCeeEEEECCeEEeeccCCCcceeEEeeecEEEEccCC-CCCCeEEEEE
Q psy15128 37 PSFVVRPQDQKVGLN---GIASFQCVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQ-KEDAGFFVCS 112 (292)
Q Consensus 37 p~~~~~~~~~~~~~g---~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~-~~d~g~Y~C~ 112 (292)
|.+...|....+.+| +++.|.|.+.|.|.+.++|++++..+..... .+.. ..++.|.|.++. ..|.|.|.|.
T Consensus 2 P~f~~~P~~~~~~~~~~g~~v~l~C~a~g~P~p~i~W~~~g~~l~~~~~---~~~~-~~~g~L~I~~~~~~~D~G~Y~C~ 77 (94)
T cd05850 2 PVFEEQPSSLLFPEGSPEEKVTLGCRARASPPATYRWKMNGTEIKFAPE---SRYT-LVAGNLVINNPQKARDAGSYQCL 77 (94)
T ss_pred CeeEECCCCEEecCCCCCCeEEEEeEceeCCCCEEEEEECCEECccCCC---ceEE-EECCeEEEccCCccCcCEEEEEE
Confidence 455566666655554 5799999999999999999999987642221 1222 235688898765 6999999999
Q ss_pred EEeCCcCee
Q psy15128 113 ALSVAGSTT 121 (292)
Q Consensus 113 ~~~~~~~~~ 121 (292)
|.|..|...
T Consensus 78 A~N~~G~~~ 86 (94)
T cd05850 78 AINRCGTVV 86 (94)
T ss_pred EEcCcCcEE
Confidence 999988654
No 128
>cd05849 Ig1_Contactin-1 First Ig domain of contactin-1. Ig1_Contactin-1: First Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may, through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.
Probab=99.47 E-value=1.6e-12 Score=82.07 Aligned_cols=80 Identities=25% Similarity=0.444 Sum_probs=58.7
Q ss_pred CcEEeCCCccEEec---CCcEEEEEEEeeeCCCeeEEEECCeEEeeccCCCcceeEEeeecEEEEccCC-CCCCeEEEEE
Q psy15128 37 PSFVVRPQDQKVGL---NGIASFQCVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQ-KEDAGFFVCS 112 (292)
Q Consensus 37 p~~~~~~~~~~~~~---g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~-~~d~g~Y~C~ 112 (292)
|.+...|....+.+ +..+.|.|.+.|.|.|.++|++++..+... ..+.. ..++.|.|.++. .+|+|.|.|.
T Consensus 2 P~f~~~P~~~~~~~~~~~~~v~l~C~a~G~P~P~i~W~k~~~~i~~~----~~~~~-~~~g~L~I~~~~~~~D~G~Y~C~ 76 (93)
T cd05849 2 PVFEEQPIDTIYPEESTEGKVSVNCRARANPFPIYKWRKNNLDIDLT----NDRYS-MVGGNLVINNPDKYKDAGRYVCI 76 (93)
T ss_pred CEEEECCCCEEecCCccCCeEEEeCcCccCCCCEEEEEECCEEccCC----CCeEE-EECCEEEECcCCcCCCCEEEEEE
Confidence 45555555544433 347999999999999999999998876321 11222 335789999885 6899999999
Q ss_pred EEeCCcCee
Q psy15128 113 ALSVAGSTT 121 (292)
Q Consensus 113 ~~~~~~~~~ 121 (292)
|.|..|...
T Consensus 77 A~N~~G~~~ 85 (93)
T cd05849 77 VSNIYGKVR 85 (93)
T ss_pred EEeCcceEE
Confidence 999988653
No 129
>cd05743 Ig_Perlecan_D2_like Immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2. Ig_Perlecan_D2_like: the immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2. Perlecan consists of five domains. Domain I has three putative heparan sulfate attachment sites; domain II has four LDL receptor-like repeats, and one Ig-like repeat; domain III resembles the short arm of laminin chains; domain IV has multiple Ig-like repeats (21 repeats in human perlecan); and domain V resembles the globular G domain of the laminin A chain and internal repeats of EGF. Perlecan may participate in a variety of biological functions including cell binding, LDL-metabolism, basement membrane assembly and selective permeability, calcium binding, and growth- and neurite-promoting activities.
Probab=99.47 E-value=5.9e-13 Score=81.44 Aligned_cols=74 Identities=26% Similarity=0.376 Sum_probs=55.3
Q ss_pred CCcEEEEEEEeeeCCCeeEEEECCeEEeeccCCCcceeEEeeecEEEEccCCCCCCeEEEEEEEeCCcCeeEEEEE
Q psy15128 51 NGIASFQCVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRAFL 126 (292)
Q Consensus 51 g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~~~~~~~~~l 126 (292)
|+.+.|.|.+.|.|.|.+.|++++..+.. ............+.|.|.++..+|+|.|+|.+.|..|.......+
T Consensus 1 G~~v~l~C~~~g~P~p~v~W~~~~~~~~~--~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~~ 74 (78)
T cd05743 1 GETVEFTCVATGVPTPIINWRLNWGHVPD--SARVSITSEGGYGTLTIRDVKESDQGAYTCEAINTRGMVFGIPDG 74 (78)
T ss_pred CCEEEEEEEEEEecCCEEEEEECCeECCC--CCCEEEEECCCEEEEEECCCChHHCEEEEEEEEecCCEEEecccE
Confidence 67899999999999999999998876531 111111111223589999999999999999999998876555443
No 130
>cd05758 Ig5_KIRREL3-like Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2) and similar proteins. Ig5_KIRREL3-like: domain similar to the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.
Probab=99.47 E-value=1.5e-12 Score=83.42 Aligned_cols=87 Identities=23% Similarity=0.320 Sum_probs=63.9
Q ss_pred CCcEEeCCCccEEecCCcEEEEEEEeeeCCC-eeEEEECCeEEeeccCCCcceeEEee-------ecEEEEccCCC-CCC
Q psy15128 36 PPSFVVRPQDQKVGLNGIASFQCVAEGSPLP-SVFWTQEGSQVLMFPGNAYGHLHVTQ-------EGTLRIQGVQK-EDA 106 (292)
Q Consensus 36 ~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~-~v~W~~~~~~~~~~~~~~~~~~~~~~-------~~~l~i~~~~~-~d~ 106 (292)
||.+ ..+....+.+|+.+.|.|.+.|.|.| .+.|++++..+...... +..... .+.|.|.++.. +|.
T Consensus 2 pp~i-~~~~~~~~~~G~~v~L~C~~~g~P~P~~v~W~~~~~~i~~~~~~---r~~i~~~~~~~~~~s~L~I~~v~~~d~~ 77 (98)
T cd05758 2 PPII-TSEATQYAILGDKGRVECFIFSTPPPDRIVWTWKENELESGSSG---RYTVETDPSPGGVLSTLTISNTQESDFQ 77 (98)
T ss_pred CCeE-cCCCcEEEeCCCcEEEEEEEcccCCCCEeEEEECCEEccCCCCC---CEEEEEecCCCceEEEEEECCccccccc
Confidence 3444 34556678899999999999999998 69999998866432211 222221 24799999998 458
Q ss_pred eEEEEEEEeCCcCeeEEEEE
Q psy15128 107 GFFVCSALSVAGSTTVRAFL 126 (292)
Q Consensus 107 g~Y~C~~~~~~~~~~~~~~l 126 (292)
|.|+|.|.|..|.....+.|
T Consensus 78 G~Y~C~A~N~~G~~~~~~~L 97 (98)
T cd05758 78 TSYNCTAWNSFGSGTAIISL 97 (98)
T ss_pred eeEEEEEEcCCCcccEEEEe
Confidence 99999999999987766543
No 131
>cd05764 Ig_2 Subgroup of the immunoglobulin (Ig) superfamily. Ig_2: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=99.47 E-value=1.7e-13 Score=83.09 Aligned_cols=68 Identities=25% Similarity=0.519 Sum_probs=52.7
Q ss_pred CCceEEEeeCCCCCCCCeEEEeE-cCeEeccCCCceEEecCCCccccccccccccccccccccceeEEEEeecccccccC
Q psy15128 213 GETALLECGPPKGQPEPTLHWKK-NGQFIDLESSKRVSILGDPWFDSRRSRSIFGSVLGALSDDQWKLIAKNIRNQQQHG 291 (292)
Q Consensus 213 g~~~~l~C~~~~~~p~~~~~W~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~a~n~~g~~~~~ 291 (292)
|+.+.|.|.+ .|.|.|.+.|++ ++..+. ...+.....+ ..|.|..+..+|+|.|+|.|.|..|.++.+
T Consensus 1 G~~~~l~C~~-~g~P~p~v~W~~~~~~~~~--~~~~~~~~~~--------~~L~i~~~~~~D~G~Y~C~a~N~~G~~~~~ 69 (74)
T cd05764 1 GQRATLRCKA-RGDPEPAIHWISPDGKLIS--NSSRTLVYDN--------GTLDILITTVKDTGSFTCIASNAAGEATAT 69 (74)
T ss_pred CCeEEEEEEc-cCcCCCEEEEEeCCCEEec--CCCeEEEecC--------CEEEEEECChhhCEEEEEEEECCCCeEEEE
Confidence 7889999998 899999999997 566654 2233332222 257788899999999999999999987653
No 132
>cd07702 Ig2_VEGFR-1 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1). Ig2_VEGFR-1: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1). VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-1 binds VEGF-A strongly; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-1 may play an inhibitory rolet in the function of VEGFR-2 by binding VEGF-A and interfering with its interaction with VEGFR-2. VEGFR-1 has a signaling role in mediating monocyte chemotaxis and may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.
Probab=99.47 E-value=6.3e-13 Score=78.87 Aligned_cols=70 Identities=19% Similarity=0.229 Sum_probs=52.7
Q ss_pred EEEEEEEeeeCCCeeEEEECCeEEeeccCCCcceeEEeeecEEEEccCCCCCCeEEEEEEEeCCcCeeEEEEEEE
Q psy15128 54 ASFQCVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQV 128 (292)
Q Consensus 54 ~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~~~~~~~~~l~v 128 (292)
+.|.|.+.|.|.|.+.|+|++..+... ..... .....|.|.+++.+|+|.|+|.+.+..........+++
T Consensus 1 ~~l~c~v~g~P~P~v~W~kdg~~l~~~----~~~~~-~~~~~L~I~~v~~~D~G~YtC~a~~~~~~~~~~~~i~~ 70 (72)
T cd07702 1 YRLTPKVKAFPAPEVIWLKDGLPAAEK----CSRYH-VDGYSLVIKDVTEEDAGIYTILLGIKQYNLFKNLTITL 70 (72)
T ss_pred CeEEeeEEEcCCCeEEEEECCEECCCC----CcEEE-eCCCEEEECcCCHHHCEEEEEEEEccccceEeeEEEEE
Confidence 368999999999999999999765311 11222 23458999999999999999999997666555555443
No 133
>cd04977 Ig1_NCAM-1_like First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1 and similar proteins. Ig1_NCAM-1 like: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the s
Probab=99.47 E-value=7.9e-13 Score=83.50 Aligned_cols=84 Identities=21% Similarity=0.410 Sum_probs=57.6
Q ss_pred EeCCCccEEecCCcEEEEEEEeeeCCCeeEEEE-CCeEEeeccCCCcceeE-EeeecEEEEccCCCCCCeEEEEEEEeCC
Q psy15128 40 VVRPQDQKVGLNGIASFQCVAEGSPLPSVFWTQ-EGSQVLMFPGNAYGHLH-VTQEGTLRIQGVQKEDAGFFVCSALSVA 117 (292)
Q Consensus 40 ~~~~~~~~~~~g~~~~l~C~~~~~~~~~v~W~~-~~~~~~~~~~~~~~~~~-~~~~~~l~i~~~~~~d~g~Y~C~~~~~~ 117 (292)
.+.|....+..|+.+.|.|.+.|.|. .+.|++ ++..+. ... ...... ....+.|+|.+++.+|+|.|+|.+.|..
T Consensus 4 ~v~p~~~~v~~G~~~~l~C~~~G~p~-~i~W~~~~~~~~~-~~~-~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~ 80 (92)
T cd04977 4 DIVPSQGEISVGESKFFLCQVIGEPK-DISWFSPNGEKLV-TQQ-QISVVQNDDVRSTLTIYNANIEDAGIYKCVATDAK 80 (92)
T ss_pred EEecCcEEECCCCeEEEEEEeEeeCC-eEEEECCCCCEec-cCC-CEEEEeCCCCEEEEEEecCCcccCEEEEEEEEcCC
Confidence 34566678899999999999999875 999998 444332 111 111100 1123489999999999999999999986
Q ss_pred cC-eeEEEEE
Q psy15128 118 GS-TTVRAFL 126 (292)
Q Consensus 118 ~~-~~~~~~l 126 (292)
|. ...++.|
T Consensus 81 g~~~~~sv~l 90 (92)
T cd04977 81 GTESEATVNL 90 (92)
T ss_pred CCcceeEEEE
Confidence 54 3444443
No 134
>cd05726 Ig4_Robo Fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Ig4_Robo: domain similar to the fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni
Probab=99.47 E-value=1.6e-13 Score=86.60 Aligned_cols=69 Identities=22% Similarity=0.367 Sum_probs=53.1
Q ss_pred CCceEEEeeCCCCCCCCeEEEeEcCeEecc------CCCceEEecCCCccccccccccccccccccccceeEEEEeeccc
Q psy15128 213 GETALLECGPPKGQPEPTLHWKKNGQFIDL------ESSKRVSILGDPWFDSRRSRSIFGSVLGALSDDQWKLIAKNIRN 286 (292)
Q Consensus 213 g~~~~l~C~~~~~~p~~~~~W~~~g~~~~~------~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~a~n~~g 286 (292)
|+.+.|.|.+ .+.|.|.+.|+++|..+.. ....++.+.. ...|.|..+..+|+|.|+|.|.|..|
T Consensus 1 G~~v~L~C~~-~g~P~p~v~W~k~g~~~~~~~~~~~~~~~r~~v~~--------~~~L~I~~v~~~D~G~Y~C~a~N~~G 71 (90)
T cd05726 1 GRTVTFQCEA-TGNPQPAIFWQKEGSQNLLFSYQPPQSSSRFSVSQ--------TGDLTITNVQRSDVGYYICQTLNVAG 71 (90)
T ss_pred CCEEEEEEEC-CccCCCEEEEEeCCCcceeecccCCCCCCeEEECC--------CCeEEEeeCChhhCEEEEEEEEcCCC
Confidence 6889999998 8999999999998864311 1122333322 23589999999999999999999999
Q ss_pred cccc
Q psy15128 287 QQQH 290 (292)
Q Consensus 287 ~~~~ 290 (292)
....
T Consensus 72 ~~~~ 75 (90)
T cd05726 72 SILT 75 (90)
T ss_pred ceEE
Confidence 8754
No 135
>cd05731 Ig3_L1-CAM_like Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). Ig3_L1-CAM_like: domain similar to the third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM and human neurofascin.
Probab=99.47 E-value=8.9e-14 Score=83.75 Aligned_cols=65 Identities=23% Similarity=0.390 Sum_probs=50.4
Q ss_pred eEEEeeCCCCCCCCeEEEeEcCeEeccCCCceEEecCCCccccccccccccccccccccceeEEEEeecccccccC
Q psy15128 216 ALLECGPPKGQPEPTLHWKKNGQFIDLESSKRVSILGDPWFDSRRSRSIFGSVLGALSDDQWKLIAKNIRNQQQHG 291 (292)
Q Consensus 216 ~~l~C~~~~~~p~~~~~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~a~n~~g~~~~~ 291 (292)
+.|.|.+ .|.|.|.+.|++++..+.. .+..... ....|.|..+..+|+|.|+|.|.|..|..+++
T Consensus 1 v~l~C~~-~g~P~p~v~W~k~~~~~~~---~~~~~~~-------~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~ 65 (71)
T cd05731 1 LLLECIA-EGLPTPEISWIKIGGELPA---DRTKFEN-------FNKTLKIDNVSEEDDGEYRCTASNSLGSARHT 65 (71)
T ss_pred CEEEEEe-eEecCCeEEEEECCeECCC---CceeEec-------CCCEEEECCCCHHHCEEEEEEEEeCCceEEEE
Confidence 4799998 8999999999999887642 1221111 12368899999999999999999999987653
No 136
>cd05739 Ig3_RPTP_IIa_LAR_like Third immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. Ig3_RPTP_IIa_LAR_like: domain similar to the third immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple IG-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains. Included in this group is Drosophila LAR (DLAR).
Probab=99.47 E-value=1e-12 Score=77.96 Aligned_cols=68 Identities=24% Similarity=0.525 Sum_probs=51.7
Q ss_pred CCcEEEEEEEeeeCCCeeEEEECCeEEeeccCCCcceeEEeeecEEEEccCCCCCCeEEEEEEEeCCcCeeEEEEE
Q psy15128 51 NGIASFQCVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRAFL 126 (292)
Q Consensus 51 g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~~~~~~~~~l 126 (292)
|+.+.|.|.+.|.|.|.|.|++++..+.. . .+. ......|.|.++. |+|.|+|.|.|..|.....+.|
T Consensus 1 G~~v~L~C~a~G~P~P~v~W~k~g~~l~~--~---~~~-~~~~~~L~i~~~~--d~G~Y~C~A~N~~G~~~~~a~l 68 (69)
T cd05739 1 GGSVNLTCVAVGAPMPYVKWMKGGEELTK--E---DEM-PVGRNVLELTNIY--ESANYTCVAISSLGMIEATAQV 68 (69)
T ss_pred CCeEEEEEEeeecCCCEEEEEECCEECCC--c---cce-ecCccEEEEeccc--cCeeEEEEEEeCCCEEEEEEEE
Confidence 67899999999999999999999976521 1 111 1223478888874 7899999999999876665544
No 137
>cd05756 Ig1_IL1R_like First immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins. Ig1_IL1R_like: domain similar to the first immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta.
Probab=99.46 E-value=3.7e-13 Score=84.96 Aligned_cols=81 Identities=17% Similarity=0.205 Sum_probs=61.4
Q ss_pred ccEEecCCcEEEEEEEee-----eCCCeeEEEECCeEEeeccCCCcceeEEeeecEEEEccCCCCCCeEEEEEEEeCCcC
Q psy15128 45 DQKVGLNGIASFQCVAEG-----SPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGS 119 (292)
Q Consensus 45 ~~~~~~g~~~~l~C~~~~-----~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~~~ 119 (292)
...+.+|+.+.|.|.+.+ .|.+.+.|+|++..+.... ....+... .++.|.|.++..+|+|.|+|.+.|..|.
T Consensus 8 ~~~v~~G~~~~L~C~~~g~~~~~~p~~~v~Wyk~~~~~~~~~-~~~~r~~~-~~~~L~I~~~~~~DsG~Y~C~~~N~~g~ 85 (94)
T cd05756 8 KSYVLEGEPVVIKCPLFYSYIAQSPGLNLTWYKSDGKTPIPT-EERSRMHQ-QKDLLWFLPAALEDSGLYTCVVRNSTYC 85 (94)
T ss_pred EEEEecCCCeEEECCCCCcccccCCCceEEEEEcCCCCcccc-cccceeee-cCCeEEEccCCcccCeEEEEEEcCCCcc
Confidence 456778999999999988 5788999999986543211 11122222 3568999999999999999999999888
Q ss_pred eeEEEEEE
Q psy15128 120 TTVRAFLQ 127 (292)
Q Consensus 120 ~~~~~~l~ 127 (292)
....+.|.
T Consensus 86 ~~~~~~L~ 93 (94)
T cd05756 86 MKVSISLT 93 (94)
T ss_pred EEEEEEEE
Confidence 77766654
No 138
>cd04967 Ig1_Contactin First Ig domain of contactin. Ig1_Contactin: First Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 weeks postnata
Probab=99.46 E-value=3.3e-13 Score=85.30 Aligned_cols=67 Identities=30% Similarity=0.474 Sum_probs=51.5
Q ss_pred CCceEEEeeCCCCCCCCeEEEeEcCeEeccCCCceEEecCCCcccccccccccccccc-ccccceeEEEEeecccccc
Q psy15128 213 GETALLECGPPKGQPEPTLHWKKNGQFIDLESSKRVSILGDPWFDSRRSRSIFGSVLG-ALSDDQWKLIAKNIRNQQQ 289 (292)
Q Consensus 213 g~~~~l~C~~~~~~p~~~~~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~-~~~~g~y~C~a~n~~g~~~ 289 (292)
|..+.|.|.+ .|.|.|.++|++++..+......++..... .|.|..+. .+|+|.|+|+|+|..|...
T Consensus 19 ~~~~~l~C~~-~g~p~p~i~W~k~~~~l~~~~~~~~~~~~~---------~L~i~~~~~~~d~G~Y~C~a~N~~G~~~ 86 (91)
T cd04967 19 EGKVSLNCRA-RGSPPPTYRWLMNGTEIDDEPDSRYSLVGG---------NLVISNPSKAKDAGRYQCLASNIVGTVL 86 (91)
T ss_pred CCEEEEEEee-eEcCCCEEEEEECCEECCCCCCCCEEEECC---------EEEEecCCccCCCEEEEEEEEcCCCEEE
Confidence 4579999998 889999999999999884333344433322 46676655 5899999999999999764
No 139
>cd04970 Ig6_Contactin_like Sixth Ig domain of contactin. Ig6_Contactin_like: Sixth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week
Probab=99.46 E-value=1.2e-12 Score=81.62 Aligned_cols=79 Identities=25% Similarity=0.352 Sum_probs=59.4
Q ss_pred CcEEEEEEEeeeCCC--eeEEEECCeEEeeccCC-Ccc-eeEEeeecEEEEccCCCCCCeEEEEEEEeCCcCeeEEEEEE
Q psy15128 52 GIASFQCVAEGSPLP--SVFWTQEGSQVLMFPGN-AYG-HLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQ 127 (292)
Q Consensus 52 ~~~~l~C~~~~~~~~--~v~W~~~~~~~~~~~~~-~~~-~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~~~~~~~~~l~ 127 (292)
+.+.|.|.+.+.|.+ .+.|++++..+...... ... .......+.|.|.+++..|+|.|+|.+.|..+.....+.|.
T Consensus 1 e~~~L~C~~~g~P~p~i~~~W~~~g~~i~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~~~~~l~ 80 (85)
T cd04970 1 ESITLQCHASHDPTLDLTFTWSFNGVPIDFDKDGGHYRRVGGKDSNGDLMIRNAQLKHAGKYTCTAQTVVDSLSASADLI 80 (85)
T ss_pred CcEEEEEEEecCCCCCeEEEEEECCeEeeccCCCccEEEEecccccceEEEccCCHHhCeeeEEEEecCCCcEEEEEEEE
Confidence 468999999998877 67999999876432211 111 11122456899999999999999999999998888888887
Q ss_pred EEe
Q psy15128 128 VTS 130 (292)
Q Consensus 128 v~~ 130 (292)
|.+
T Consensus 81 V~~ 83 (85)
T cd04970 81 VRG 83 (85)
T ss_pred EEC
Confidence 763
No 140
>cd05738 Ig2_RPTP_IIa_LAR_like Second immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. Ig2_RPTP_IIa_LAR_like: domain similar to the second immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple Ig-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains.
Probab=99.46 E-value=1e-12 Score=79.49 Aligned_cols=72 Identities=29% Similarity=0.515 Sum_probs=55.0
Q ss_pred EEEEEEEeeeCCCeeEEEECCeEEeeccCCCcceeEEeeecEEEEccCCCCCCeEEEEEEEeCCcCe-eEEEEEEE
Q psy15128 54 ASFQCVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGST-TVRAFLQV 128 (292)
Q Consensus 54 ~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~~~~-~~~~~l~v 128 (292)
++|.|.+.|.|.|.+.|+|++..+.... ..+.....++.|.|.+++.+|+|.|+|.+.|..|.. ...+.|.|
T Consensus 1 a~l~C~~~G~P~p~v~W~k~~~~~~~~~---~~~~~~~~~g~L~i~~~~~~D~G~Y~C~a~N~~G~~~s~~a~l~v 73 (74)
T cd05738 1 ATMLCAASGNPDPEITWFKDFLPVDTTS---NGRIKQLRSGALQIENSEESDQGKYECVATNSAGTRYSAPANLYV 73 (74)
T ss_pred CEEEEEEeEecCCEEEEEECCEECccCC---CCCEEEcCCcEEEECCCChhhCEEEEEEEECCCCceEcccEEEEE
Confidence 4799999999999999999987653211 223344456689999999999999999999998874 44555544
No 141
>cd05731 Ig3_L1-CAM_like Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). Ig3_L1-CAM_like: domain similar to the third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM and human neurofascin.
Probab=99.46 E-value=7.6e-13 Score=79.66 Aligned_cols=70 Identities=29% Similarity=0.505 Sum_probs=54.3
Q ss_pred EEEEEEEeeeCCCeeEEEECCeEEeeccCCCcceeEEeeecEEEEccCCCCCCeEEEEEEEeCCcCeeEEEEEEE
Q psy15128 54 ASFQCVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQV 128 (292)
Q Consensus 54 ~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~~~~~~~~~l~v 128 (292)
+.|.|.+.|.|.|.+.|++++..+.. . ..........|.|.+++.+|+|.|+|.+.|..|.....+.|.|
T Consensus 1 v~l~C~~~g~P~p~v~W~k~~~~~~~--~---~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V 70 (71)
T cd05731 1 LLLECIAEGLPTPEISWIKIGGELPA--D---RTKFENFNKTLKIDNVSEEDDGEYRCTASNSLGSARHTISVTV 70 (71)
T ss_pred CEEEEEeeEecCCeEEEEECCeECCC--C---ceeEecCCCEEEECCCCHHHCEEEEEEEEeCCceEEEEEEEEE
Confidence 47999999999999999999876521 1 1111223458999999999999999999999988776666654
No 142
>cd05740 Ig_CEACAM_D4 Fourth immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM). Ig_CEACAM_D4: immunoglobulin (Ig)-like domain 4 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the
Probab=99.46 E-value=1.7e-12 Score=81.50 Aligned_cols=78 Identities=26% Similarity=0.465 Sum_probs=60.1
Q ss_pred CccEEecCCcEEEEEEEeeeCCCeeEEEECCeEEeeccCCCcceeEEe-eecEEEEccCCCCCCeEEEEEEEeCCcCeeE
Q psy15128 44 QDQKVGLNGIASFQCVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVT-QEGTLRIQGVQKEDAGFFVCSALSVAGSTTV 122 (292)
Q Consensus 44 ~~~~~~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~-~~~~l~i~~~~~~d~g~Y~C~~~~~~~~~~~ 122 (292)
....+.+|++++|.|.+.|. .|.+.|++++..+.. .+.... ..+.|.|.+++.+|+|.|.|.|.|..|....
T Consensus 11 ~~~~v~~g~~v~l~C~a~g~-~p~i~W~kng~~l~~------~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~S 83 (91)
T cd05740 11 GNQPPEDNQPVTLTCEAEGQ-ATYIWWVNNGSLLVP------PRLQLSNDNRTLTFNNVTRSDTGHYQCEASNEVSNMTS 83 (91)
T ss_pred CccccccCCcEEEEEEeCCC-CCEEEEEECCEECCC------CCEEEeCCCCEEEECcCChhhCEEEEEEEEcCCCCEEe
Confidence 45678899999999999999 899999999876521 112222 3458999999999999999999999887543
Q ss_pred -EEEEEE
Q psy15128 123 -RAFLQV 128 (292)
Q Consensus 123 -~~~l~v 128 (292)
.+.|.|
T Consensus 84 ~~~~L~V 90 (91)
T cd05740 84 DPYILNV 90 (91)
T ss_pred eeEEEEe
Confidence 344443
No 143
>cd05853 Ig6_Contactin-4 Sixth Ig domain of contactin-4. Ig6_Contactin-4: sixth Ig domain of the neural cell adhesion molecule contactin-4. Contactins are neural cell adhesion molecules, and are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. Highest expresson of contactin-4 is in testes, thyroid, small intestine, uterus and brain. Contactin-4 plays a role in the response of neuroblastoma cells to differentiating agents, such as retinoids. The contactin 4 gene is associated with cerebellar degeneration in spinocerebellar ataxia type 16.
Probab=99.46 E-value=6.6e-13 Score=81.41 Aligned_cols=77 Identities=19% Similarity=0.284 Sum_probs=60.0
Q ss_pred CcEEEEEEEeee--CCCeeEEEECCeEEeeccCCCcceeEE----eeecEEEEccCCCCCCeEEEEEEEeCCcCeeEEEE
Q psy15128 52 GIASFQCVAEGS--PLPSVFWTQEGSQVLMFPGNAYGHLHV----TQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRAF 125 (292)
Q Consensus 52 ~~~~l~C~~~~~--~~~~v~W~~~~~~~~~~~~~~~~~~~~----~~~~~l~i~~~~~~d~g~Y~C~~~~~~~~~~~~~~ 125 (292)
+++.|.|.+.+. +.+.+.|++++..+...... .++.. ...+.|.|.+++..|+|.|+|.|.+..+....++.
T Consensus 1 ~~~~l~C~v~~d~~l~~~~~W~~dg~~i~~~~~~--~~~~~~~~~~~~~~L~I~nv~~~dsG~YtC~a~n~~~~~~a~a~ 78 (85)
T cd05853 1 ESIVLPCQVSHDHSLDIVFTWSFNGHLIDFQKDG--DHFERVGGQDSAGDLMIRSIQLKHAGKYVCMVQTSVDKLSAAAD 78 (85)
T ss_pred CcEEEEEEeccCCCCCcEEEEEECCEECcccCCC--ccEEEeccCCCCCcEEEecCCHHHCEEEEEEEEcccCceEEEEE
Confidence 468999999774 46789999999987532111 12222 23568999999999999999999999999999999
Q ss_pred EEEEe
Q psy15128 126 LQVTS 130 (292)
Q Consensus 126 l~v~~ 130 (292)
|.|.+
T Consensus 79 L~V~~ 83 (85)
T cd05853 79 LIVRG 83 (85)
T ss_pred EEEec
Confidence 88874
No 144
>cd04971 Ig_TrKABC_d5 Fifth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC. TrkABC_d5: the fifth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrkB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor foun
Probab=99.46 E-value=1.1e-12 Score=80.33 Aligned_cols=71 Identities=15% Similarity=0.259 Sum_probs=53.0
Q ss_pred EEEEEeeeCCCeeEEEECCeEEeeccCCCcceeE------EeeecEEEEccCCCCCCeEEEEEEEeCCcCeeEEEEEE
Q psy15128 56 FQCVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLH------VTQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQ 127 (292)
Q Consensus 56 l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~------~~~~~~l~i~~~~~~d~g~Y~C~~~~~~~~~~~~~~l~ 127 (292)
|.|.+.|.|.|.++|+|++..+..... ...... ....+.|.|.+++.+|+|.|+|.|.|..|.......+.
T Consensus 3 i~~~v~G~P~P~v~W~k~g~~i~~~~~-~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~YtC~A~N~~G~~~~~~~~~ 79 (81)
T cd04971 3 IPFTVRGNPKPTLTWYHNGAVLNESDY-IRTEIHYEVTTPTEYHGCLQFDNPTHVNNGNYTLVASNEYGQDSKSISAH 79 (81)
T ss_pred EEEEeEeeCCCcEEEEECCEECcCCCc-eeEEEEeecccccccEEEEEECCCCcccCeEEEEEEEeCCCCeeeEEEee
Confidence 689999999999999999987742211 000111 11244799999999999999999999999887766554
No 145
>cd05854 Ig6_Contactin-2 Sixth Ig domain of contactin-2. Ig6_Contactin-2: Sixth Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c
Probab=99.46 E-value=1.5e-13 Score=85.27 Aligned_cols=73 Identities=14% Similarity=0.198 Sum_probs=53.2
Q ss_pred CceEEEeeCCCCCCCC--eEEEeEcCeEeccCC-CceEEecCCCccccccccccccccccccccceeEEEEeeccccccc
Q psy15128 214 ETALLECGPPKGQPEP--TLHWKKNGQFIDLES-SKRVSILGDPWFDSRRSRSIFGSVLGALSDDQWKLIAKNIRNQQQH 290 (292)
Q Consensus 214 ~~~~l~C~~~~~~p~~--~~~W~~~g~~~~~~~-~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~a~n~~g~~~~ 290 (292)
+.++|.|.+ .|.|.| .+.|+++|+++.... ..++..... ......|.|..++..|+|.|+|.|+|.+|++++
T Consensus 1 ~~~~L~C~a-~g~P~p~~~v~W~~~g~~i~~~~~~~~~~~~~~----~~~~~~L~I~~v~~~D~G~YtC~A~n~~g~~~~ 75 (85)
T cd05854 1 ENLTLQCHA-SHDPTMDLTFTWSLDDFPIDLDKPNGHYRRMEV----KETIGDLVIVNAQLSHAGTYTCTAQTVVDSASA 75 (85)
T ss_pred CcEEEEEEE-ecCCCCCeEEEEEECCeEccccCCCCcEEEEEe----cceEeEEEEccCChhhCeEEEEEEecCCCCEEE
Confidence 468999998 888876 689999999885322 222211100 011236899999999999999999999999876
Q ss_pred C
Q psy15128 291 G 291 (292)
Q Consensus 291 ~ 291 (292)
+
T Consensus 76 ~ 76 (85)
T cd05854 76 S 76 (85)
T ss_pred E
Confidence 4
No 146
>cd05855 Ig_TrkB_d5 Fifth domain (immunoglobulin-like) of Trk receptor TrkB. TrkB_d5: the fifth domain of Trk receptor TrkB, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors, which mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. The Trks are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkB shares significant sequence homology and domain organization with TrkA, and TrkC. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. In some cell systems NT-3 can activate TrkA and TrkB receptors. TrKB transcripts are found throughout multiple structures of the central and peripheral nervous systems.
Probab=99.46 E-value=1.1e-12 Score=79.21 Aligned_cols=72 Identities=15% Similarity=0.212 Sum_probs=52.6
Q ss_pred EEEEEeeeCCCeeEEEECCeEEeeccCCCcceeE---EeeecEEEEccCCCCCCeEEEEEEEeCCcCeeEEEEEE
Q psy15128 56 FQCVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLH---VTQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQ 127 (292)
Q Consensus 56 l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~---~~~~~~l~i~~~~~~d~g~Y~C~~~~~~~~~~~~~~l~ 127 (292)
|.|.+.|.|.|.++|+|++..+............ ....+.|.|.++..+|+|.|+|.|.|..|....++.+.
T Consensus 3 i~~~v~G~P~Pti~W~kng~~l~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~YtC~A~N~~G~~~~~~~~~ 77 (79)
T cd05855 3 IPFTVKGNPKPTLQWFHEGAILNESEYICTKIHVINNTEYHGCLQLDNPTHLNNGIYTLVAKNEYGEDEKNVSAH 77 (79)
T ss_pred EEEEEeEeCCCceEEEECCEECCCCcceeeeeEeecccceEEEEEECCCCcccCEEEEEEEEcCCcccceEEEee
Confidence 6789999999999999999877421100000000 11245799999999999999999999999877666543
No 147
>cd05763 Ig_1 Subgroup of the immunoglobulin (Ig) superfamily. Ig_1: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=99.45 E-value=7.1e-13 Score=80.54 Aligned_cols=73 Identities=32% Similarity=0.618 Sum_probs=54.9
Q ss_pred EEEEEEEeeeCCCeeEEEECCeEEeeccCCCcceeEE-eeecEEEEccCCCCCCeEEEEEEEeCCcCeeEEEEEEE
Q psy15128 54 ASFQCVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHV-TQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQV 128 (292)
Q Consensus 54 ~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~-~~~~~l~i~~~~~~d~g~Y~C~~~~~~~~~~~~~~l~v 128 (292)
+.|.|.+.|.|.|.+.|+|++..... .....+... ...+.|.|.+++.+|+|.|+|.+.|..|.....+.|.|
T Consensus 1 a~l~C~~~G~P~P~v~W~k~~~~~~~--~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~A~N~~G~~~~~~~l~V 74 (75)
T cd05763 1 ARLECAATGHPTPQIAWQKDGGTDFP--AARERRMHVMPEDDVFFIVDVKIEDTGVYSCTAQNTAGSISANATLTV 74 (75)
T ss_pred CEeEeecccccCCEEEEEeCCCccCC--cccccceEEecCCCEEEEeeCCcccCEEEEEEEEcCCCEEEeeEEEEE
Confidence 47899999999999999998764211 111122222 23458999999999999999999999998777777665
No 148
>cd05773 Ig8_hNephrin_like Eighth immunoglobulin-like domain of nephrin. Ig8_hNephrin_like: domain similar to the eighth immunoglobulin-like domain in human nephrin. Nephrin is an integral component of the slit diaphragm, and is a central component of the glomerular ultrafilter. Nephrin plays a structural role, and has a role in signaling. Nephrin is a transmembrane protein having a short intracellular portion, and an extracellular portion comprised of eight Ig-like domains, and one fibronectin type III-like domain. The extracellular portions of nephrin, from neighboring foot processes of separate podocyte cells, may interact with each other, and in association with other components of the slit diaphragm, form a porous molecular sieve within the slit pore. The intracellular portion of nephrin is associated with linker proteins, which connect nephrin to the actin cytoskeleton. The intracellular portion is tyrosine phosphorylated, and mediates signaling from the slit diaphragm into the p
Probab=99.45 E-value=3.7e-13 Score=87.73 Aligned_cols=76 Identities=21% Similarity=0.267 Sum_probs=55.1
Q ss_pred CCCceEEEeeCCCCCCCCeEEEeEcCeEeccCCCceEEecCCCcccccccccccccccc-ccccceeEEEEeeccccccc
Q psy15128 212 SGETALLECGPPKGQPEPTLHWKKNGQFIDLESSKRVSILGDPWFDSRRSRSIFGSVLG-ALSDDQWKLIAKNIRNQQQH 290 (292)
Q Consensus 212 ~g~~~~l~C~~~~~~p~~~~~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~-~~~~g~y~C~a~n~~g~~~~ 290 (292)
.|..+.|.|.+ .|.|.+.+.|+++|..+... +.++....... .......|.|..+. ..|.|.|+|.|.|.+|+++.
T Consensus 22 ~g~~v~L~C~a-~G~P~p~i~W~k~g~~l~~~-~~r~~~~~~~~-~~~~~s~L~I~~v~~~~D~G~Y~C~A~N~~G~~~~ 98 (109)
T cd05773 22 GSSDANLVCQA-QGVPRVQFRWAKNGVPLDLG-NPRYEETTEHT-GTVHTSILTIINVSAALDYALFTCTAHNSLGEDSL 98 (109)
T ss_pred CCCEEEEEEEC-cccCCCEEEEEECCEECCCC-CCeEEEEeecc-CccceeEEEECcCCccCCCEEEEEEEEeCCccCcE
Confidence 46889999999 89999999999999988532 22332221110 00112468888886 58999999999999999864
No 149
>cd05873 Ig_Sema4D_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4D. Ig_Sema4D_like; Immunoglobulin (Ig)-like domain of Sema4D. Sema4D is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4D has extracellular Sema and Ig domains, a transmembrane domain, and a short cytoplasmic domain. Sema4D plays a part in the development of GABAergic synapses. Sema4D in addition is an immune semaphorin. It is abundant on resting T cells; its expression is weak on resting B cells and antigen presenting cells (APCs), but is upregulated by various stimuli. The receptor used by Sema4D in the immune system is CD72. Sem4D enhances the activation of B cells and DCs through binding CD72, perhaps by reducing CD72s inhibitory signals. The receptor used by Sema4D in the non-lymphatic tissues is plexin-B1. Sem4D is anchored to the cell surface but its extracellular domain can be released from the cell surface by a metalloproteas
Probab=99.45 E-value=6.8e-13 Score=81.65 Aligned_cols=69 Identities=19% Similarity=0.375 Sum_probs=55.9
Q ss_pred CcceEEeCCCceEEEeeCCCCCCCCeEEEeEcCeEeccCCCceEEecCCCccccccccccccccccccccceeEEEEeec
Q psy15128 205 PKDTRVASGETALLECGPPKGQPEPTLHWKKNGQFIDLESSKRVSILGDPWFDSRRSRSIFGSVLGALSDDQWKLIAKNI 284 (292)
Q Consensus 205 ~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~a~n~ 284 (292)
|....+..|+++.|.|.+ .+ |.+.+.|++||++|.... .++.+.++ .|.|.+++..|+|.|+|.|.+.
T Consensus 3 P~~~~v~~G~~v~L~C~~-~~-~~~~i~W~~ng~~i~~~~-~r~~~~~~---------~L~I~nv~~~DsG~Y~C~a~e~ 70 (87)
T cd05873 3 PRQRTFKLGNNAELKCSP-KS-NLARVVWKFDGKVLTPES-AKYLLYRD---------GLLIFNASEADAGRYQCLSVEK 70 (87)
T ss_pred cceEEEECCCCEEEEEEC-CC-CCCeEEEEECCEECCCCC-ceEEEECC---------cEEEeCCCHHHCEEEEEEEEec
Confidence 567889999999999997 44 678999999999996432 34544433 5889999999999999999987
Q ss_pred c
Q psy15128 285 R 285 (292)
Q Consensus 285 ~ 285 (292)
.
T Consensus 71 ~ 71 (87)
T cd05873 71 S 71 (87)
T ss_pred c
Confidence 4
No 150
>cd04974 Ig3_FGFR Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Ig3_FGFR: third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs.
Probab=99.45 E-value=8.8e-13 Score=83.02 Aligned_cols=77 Identities=23% Similarity=0.353 Sum_probs=55.9
Q ss_pred CCcEEEEEEEeeeCCCeeEEEECC----eEEeeccCCCcce--------eEEeeecEEEEccCCCCCCeEEEEEEEeCCc
Q psy15128 51 NGIASFQCVAEGSPLPSVFWTQEG----SQVLMFPGNAYGH--------LHVTQEGTLRIQGVQKEDAGFFVCSALSVAG 118 (292)
Q Consensus 51 g~~~~l~C~~~~~~~~~v~W~~~~----~~~~~~~~~~~~~--------~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~~ 118 (292)
|+.++|.|.+.|.|.|.|+|+|++ ..+. ..+..... ........|.|.+++.+|+|.|+|.|.|..|
T Consensus 1 G~~v~l~C~v~g~P~P~i~W~k~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G 79 (90)
T cd04974 1 GSDVEFHCKVYSDAQPHIQWLKHVEVNGSKYG-PDGLPYVTVLKVAGINTTDNESEVLYLRNVSFDDAGEYTCLAGNSIG 79 (90)
T ss_pred CCcEEEEEEEeCCCCCeEEEEEecccCCceeC-CCCCceEEEEEecCCcccccccceEEEeccccccCcEEEEEeecccC
Confidence 678999999999999999999964 2211 00000000 0011234799999999999999999999999
Q ss_pred CeeEEEEEEE
Q psy15128 119 STTVRAFLQV 128 (292)
Q Consensus 119 ~~~~~~~l~v 128 (292)
....++.|.|
T Consensus 80 ~~~~sa~L~V 89 (90)
T cd04974 80 PSHHSAWLTV 89 (90)
T ss_pred cccCCEEEEe
Confidence 8888877765
No 151
>cd05773 Ig8_hNephrin_like Eighth immunoglobulin-like domain of nephrin. Ig8_hNephrin_like: domain similar to the eighth immunoglobulin-like domain in human nephrin. Nephrin is an integral component of the slit diaphragm, and is a central component of the glomerular ultrafilter. Nephrin plays a structural role, and has a role in signaling. Nephrin is a transmembrane protein having a short intracellular portion, and an extracellular portion comprised of eight Ig-like domains, and one fibronectin type III-like domain. The extracellular portions of nephrin, from neighboring foot processes of separate podocyte cells, may interact with each other, and in association with other components of the slit diaphragm, form a porous molecular sieve within the slit pore. The intracellular portion of nephrin is associated with linker proteins, which connect nephrin to the actin cytoskeleton. The intracellular portion is tyrosine phosphorylated, and mediates signaling from the slit diaphragm into the p
Probab=99.45 E-value=1.4e-12 Score=84.98 Aligned_cols=79 Identities=23% Similarity=0.335 Sum_probs=59.0
Q ss_pred cCCcEEEEEEEeeeCCCeeEEEECCeEEeeccCCCcceeEE----eeecEEEEccCC-CCCCeEEEEEEEeCCcCeeEEE
Q psy15128 50 LNGIASFQCVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHV----TQEGTLRIQGVQ-KEDAGFFVCSALSVAGSTTVRA 124 (292)
Q Consensus 50 ~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~----~~~~~l~i~~~~-~~d~g~Y~C~~~~~~~~~~~~~ 124 (292)
.|..+.|.|.+.|.|.+.+.|++++..+.... ..+..... ...+.|+|.++. .+|.|.|+|.|.|..|.....+
T Consensus 22 ~g~~v~L~C~a~G~P~p~i~W~k~g~~l~~~~-~r~~~~~~~~~~~~~s~L~I~~v~~~~D~G~Y~C~A~N~~G~~~~~i 100 (109)
T cd05773 22 GSSDANLVCQAQGVPRVQFRWAKNGVPLDLGN-PRYEETTEHTGTVHTSILTIINVSAALDYALFTCTAHNSLGEDSLDI 100 (109)
T ss_pred CCCEEEEEEECcccCCCEEEEEECCEECCCCC-CeEEEEeeccCccceeEEEECcCCccCCCEEEEEEEEeCCccCcEEE
Confidence 45789999999999999999999998763221 11110001 113579999997 5899999999999999988777
Q ss_pred EEEEE
Q psy15128 125 FLQVT 129 (292)
Q Consensus 125 ~l~v~ 129 (292)
.|.+.
T Consensus 101 ~L~~~ 105 (109)
T cd05773 101 QLVST 105 (109)
T ss_pred EEEec
Confidence 77665
No 152
>cd05727 Ig2_Contactin-2-like Second Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins. Ig2_Contactin-2-like: second Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.
Probab=99.45 E-value=5.8e-13 Score=83.13 Aligned_cols=77 Identities=14% Similarity=0.241 Sum_probs=59.8
Q ss_pred cceEEeCCCceEEEeeCCCCCCCCeEEEeEcCeEeccCCCce-EEecCCCccccccccccccccccccccceeEEEEeec
Q psy15128 206 KDTRVASGETALLECGPPKGQPEPTLHWKKNGQFIDLESSKR-VSILGDPWFDSRRSRSIFGSVLGALSDDQWKLIAKNI 284 (292)
Q Consensus 206 ~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~g~~~~~~~~~~-~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~a~n~ 284 (292)
....+.+|+.+.|.|....+.|.+.+.|++++.++....+.+ +....+| .|.+..+...|+|.|.|.|+|.
T Consensus 11 ~~~~v~eG~~~~L~C~pP~g~P~p~~~W~k~~~~~~~~~d~r~~~~~~~G--------~L~fs~v~~~D~g~Y~C~A~n~ 82 (96)
T cd05727 11 DEVKVKEGWGVVLFCDPPPHYPDLSYRWLLNEFPNFIPEDGRRFVSQTNG--------NLYIAKVEASDRGNYSCFVSSP 82 (96)
T ss_pred CceeeeeCCcEEEeeCCCCCCCCCEEEEEECCcccccccCCCeEEeCCCC--------cEEEeecCHhhCceeEEEEEec
Confidence 456788999999999988899999999999987653222333 3222233 5889999999999999999999
Q ss_pred cccccc
Q psy15128 285 RNQQQH 290 (292)
Q Consensus 285 ~g~~~~ 290 (292)
++....
T Consensus 83 ~~~~~~ 88 (96)
T cd05727 83 SSTKSV 88 (96)
T ss_pred ccCCcc
Confidence 877643
No 153
>cd05756 Ig1_IL1R_like First immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins. Ig1_IL1R_like: domain similar to the first immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta.
Probab=99.44 E-value=3.1e-13 Score=85.33 Aligned_cols=75 Identities=15% Similarity=0.182 Sum_probs=57.8
Q ss_pred cceEEeCCCceEEEeeCCCC-----CCCCeEEEeEcCeEeccC--CCceEEecCCCccccccccccccccccccccceeE
Q psy15128 206 KDTRVASGETALLECGPPKG-----QPEPTLHWKKNGQFIDLE--SSKRVSILGDPWFDSRRSRSIFGSVLGALSDDQWK 278 (292)
Q Consensus 206 ~~~~~~~g~~~~l~C~~~~~-----~p~~~~~W~~~g~~~~~~--~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~ 278 (292)
....+.+|+.+.|.|.+ .+ .|.+.+.|+|+|..+... ...++...+ ..|.|..+..+|+|.|.
T Consensus 7 ~~~~v~~G~~~~L~C~~-~g~~~~~~p~~~v~Wyk~~~~~~~~~~~~~r~~~~~---------~~L~I~~~~~~DsG~Y~ 76 (94)
T cd05756 7 KKSYVLEGEPVVIKCPL-FYSYIAQSPGLNLTWYKSDGKTPIPTEERSRMHQQK---------DLLWFLPAALEDSGLYT 76 (94)
T ss_pred eEEEEecCCCeEEECCC-CCcccccCCCceEEEEEcCCCCcccccccceeeecC---------CeEEEccCCcccCeEEE
Confidence 45677899999999998 66 688899999998765321 122332211 26889999999999999
Q ss_pred EEEeeccccccc
Q psy15128 279 LIAKNIRNQQQH 290 (292)
Q Consensus 279 C~a~n~~g~~~~ 290 (292)
|.|+|..|..+.
T Consensus 77 C~~~N~~g~~~~ 88 (94)
T cd05756 77 CVVRNSTYCMKV 88 (94)
T ss_pred EEEcCCCccEEE
Confidence 999999998764
No 154
>cd07702 Ig2_VEGFR-1 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1). Ig2_VEGFR-1: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1). VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-1 binds VEGF-A strongly; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-1 may play an inhibitory rolet in the function of VEGFR-2 by binding VEGF-A and interfering with its interaction with VEGFR-2. VEGFR-1 has a signaling role in mediating monocyte chemotaxis and may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.
Probab=99.44 E-value=2.5e-13 Score=80.60 Aligned_cols=62 Identities=15% Similarity=0.123 Sum_probs=48.5
Q ss_pred eEEEeeCCCCCCCCeEEEeEcCeEeccCCCceEEecCCCccccccccccccccccccccceeEEEEeeccccc
Q psy15128 216 ALLECGPPKGQPEPTLHWKKNGQFIDLESSKRVSILGDPWFDSRRSRSIFGSVLGALSDDQWKLIAKNIRNQQ 288 (292)
Q Consensus 216 ~~l~C~~~~~~p~~~~~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~a~n~~g~~ 288 (292)
+.|+|.+ .|.|+|.+.|+|+|.++... ..++... ...|.|..+..+|+|.|+|.|+|.....
T Consensus 1 ~~l~c~v-~g~P~P~v~W~kdg~~l~~~-~~~~~~~---------~~~L~I~~v~~~D~G~YtC~a~~~~~~~ 62 (72)
T cd07702 1 YRLTPKV-KAFPAPEVIWLKDGLPAAEK-CSRYHVD---------GYSLVIKDVTEEDAGIYTILLGIKQYNL 62 (72)
T ss_pred CeEEeeE-EEcCCCeEEEEECCEECCCC-CcEEEeC---------CCEEEECcCCHHHCEEEEEEEEccccce
Confidence 4799998 89999999999999988532 1233221 1258899999999999999999986543
No 155
>KOG3515|consensus
Probab=99.43 E-value=9.9e-13 Score=109.42 Aligned_cols=275 Identities=17% Similarity=0.172 Sum_probs=152.7
Q ss_pred cccCCcCCCeeEEEEEEeccccc--ccccEEEEEeCCCc-EEe--CCCccEEecCCcEEEEEEEee-eCCCeeEEEECCe
Q psy15128 2 ITEVKKSDEGKYQCYVQNMVGER--ETKPALLTVHAPPS-FVV--RPQDQKVGLNGIASFQCVAEG-SPLPSVFWTQEGS 75 (292)
Q Consensus 2 i~~v~~~D~G~Y~C~~~~~~~~~--~~~~~~l~v~~~p~-~~~--~~~~~~~~~g~~~~l~C~~~~-~~~~~v~W~~~~~ 75 (292)
+...+.+|.|.|+|.+.+.+... ......+.+..+.. +.. ......+.+|+.+.|.|.+.+ .|.+.++|+++..
T Consensus 167 ~~v~Rka~~g~~tC~A~nr~s~~l~~~~~~~i~v~~~~~~~~~~~~~~~qsF~~g~~inlvc~~~gg~P~~~~~w~~~s~ 246 (741)
T KOG3515|consen 167 QTVSRKADNGNYTCPANNRNSPGLSFAKQLTIIVEAPCKGIGITGAQEQQSFTEGQTINLVCNAQGGNPSQQQTWYKDSR 246 (741)
T ss_pred eEEEEecCCceeEcccccccCccccccceeEeecccccccceecchhhcCcccccceEEEEehhhcCCcchhhhhccccc
Confidence 34567889999999998853222 22224444443322 111 223356788999999996654 6888999999887
Q ss_pred EEeeccCCCcceeEEeeecEEEEccCCCCCCeEEEEEEEeCCcCeeEEEEEEEEeecCCCCCeEEeCCCCceecCCCeEE
Q psy15128 76 QVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVTSVEDTPPPIVQVGPSNQTLPLHSVAF 155 (292)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~g~~v~ 155 (292)
.....+..............+.+..-..++.....|.+.| .... ...+.+.. ++-...+.+....+..|++..
T Consensus 247 ~~~~~sl~~~~~sg~~v~~~~~~~~~r~~~~~~~kc~a~n-~~~~--~~~tav~~----~~~~~~Ist~~~~ls~g~s~r 319 (741)
T KOG3515|consen 247 PQSESSLLSQEPSGDTVSSTLVLRVGRQDLQAQLKCKASN-LLAA--SQITAVQV----KPTAVPISTSDSGLSSGRSAR 319 (741)
T ss_pred cchhhhcccCCCCCCcccccccccccccchhhhhhccccC-cccc--ceeeeccc----ccccccccCcccccccccccc
Confidence 6543210000000011122444554555556677899987 1111 11122211 122222233334477899999
Q ss_pred EEeEe-ccCCCCceEEEeCCeeCCCCCccEEEcC-CC-----cEEEEeeecCCCC-------------------------
Q psy15128 156 LPCQA-VGSPPPHIRWYKNGNSLPPEDTRINVSS-SG-----SLQIDVLRDDFRA------------------------- 203 (292)
Q Consensus 156 l~C~~-~~~p~~~~~W~~~~~~l~~~~~~~~~~~-~~-----~l~i~~~~~~d~g------------------------- 203 (292)
+.|.. .++|.+.+.|+|+............... .+ .+........|.|
T Consensus 320 ~~c~~sss~p~~~i~w~~~~~~~~~~~~~~~~t~~~~~v~~~~~~~q~~~~~~~g~v~c~a~~~~~~~~sss~~~l~~l~ 399 (741)
T KOG3515|consen 320 SSCVSSSSKPPAHIAWYKDTKMPKGSQKASSKTSNMGGVAVISHYAQPSSQQDGGQVTCPADNLELAHSSSSSFLLPVLP 399 (741)
T ss_pred cceeccCCCCccceeeeccCcccccccCcccCCCcccceeeEEeeecccchhcCceEEccccccccccccccceeccccC
Confidence 99986 5557888999996544432211000000 00 1122222222333
Q ss_pred -------CCcceEEeCCCceEEEeeCCCCCCCCeEEEeEcCeEeccCCCceEEecCCCccccccccccccccccccccce
Q psy15128 204 -------EPKDTRVASGETALLECGPPKGQPEPTLHWKKNGQFIDLESSKRVSILGDPWFDSRRSRSIFGSVLGALSDDQ 276 (292)
Q Consensus 204 -------~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~ 276 (292)
........+++.....-.+...++.+.+.|++.+.++....+..+.+..... ...+..+...|.|.
T Consensus 400 ~p~~L~~~~~~v~~~e~d~~~~~~~~~~~p~~~~~~w~~~~~~~~~~~g~~~~v~~~~~-------~~s~~~v~~~d~g~ 472 (741)
T KOG3515|consen 400 SPAFLVRHKTAVVAMEQDHQAAPLPVRGAPAERTFYWTFRLYKLSQVDGGVVRVGAGAG-------LGSGVNVSRSDGGS 472 (741)
T ss_pred CchhhhhcccceeeccCccccccCcccCCCcccchhheecceecccccCceEEeecccc-------ccccceeeeccCCc
Confidence 1133334455555555554344556799999999888655555555444432 23355688999999
Q ss_pred eEEEEeeccccccc
Q psy15128 277 WKLIAKNIRNQQQH 290 (292)
Q Consensus 277 y~C~a~n~~g~~~~ 290 (292)
|.|.|+|..|.+..
T Consensus 473 y~~tatns~gg~~~ 486 (741)
T KOG3515|consen 473 YGLTATNSPGGAQA 486 (741)
T ss_pred ceeeeccCCCceee
Confidence 99999999998753
No 156
>cd05722 Ig1_Neogenin First immunoglobulin (Ig)-like domain in neogenin and similar proteins. Ig1_Neogenin: first immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.
Probab=99.43 E-value=3e-12 Score=81.67 Aligned_cols=78 Identities=29% Similarity=0.532 Sum_probs=58.3
Q ss_pred EeCCCccEEecCCcEEEEEEEeeeCCCeeEEEECCeEEeeccCCCcceeEEeeecEEEEccC-----CCCCCeEEEEEEE
Q psy15128 40 VVRPQDQKVGLNGIASFQCVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGV-----QKEDAGFFVCSAL 114 (292)
Q Consensus 40 ~~~~~~~~~~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~-----~~~d~g~Y~C~~~ 114 (292)
...|....+.+|+++.|.|.+.+.|.+.+.|+|++..+.... ..+.....++.|.|..+ ...|.|.|+|.+.
T Consensus 3 ~~~P~~~~~~~g~~v~l~C~v~g~P~p~i~W~k~g~~l~~~~---~~~~~~~~~~~l~i~~v~~~~~~~~D~G~Y~C~a~ 79 (95)
T cd05722 3 LSEPSDIVAVRGGPVVLNCSAEGEPPPKIEWKKDGVLLNLVS---DERRQQLPNGSLLITSVVHSKHNKPDEGFYQCVAQ 79 (95)
T ss_pred EECCCCeEEcCCCCEEEeeecccCCCCEEEEEECCeECcccc---CcceEEccCCeEEEeeeeccCCCCCcCEEEEEEEE
Confidence 345667778889999999999999999999999998763221 11122333455666665 5889999999999
Q ss_pred eC-CcCe
Q psy15128 115 SV-AGST 120 (292)
Q Consensus 115 ~~-~~~~ 120 (292)
|. .|..
T Consensus 80 N~~~G~~ 86 (95)
T cd05722 80 NDSLGSI 86 (95)
T ss_pred CCccCcE
Confidence 98 7765
No 157
>cd05858 Ig3_FGFR-2 Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor 2 (FGFR2). Ig3_FGFR-2-like; domain similar to the third immunoglobulin (Ig)-like domain of human fibroblast growth factor receptor 2 (FGFR2). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs. FGFR2 is required for male sex determination.
Probab=99.43 E-value=1.6e-12 Score=81.87 Aligned_cols=77 Identities=25% Similarity=0.351 Sum_probs=55.5
Q ss_pred CCcEEEEEEEeeeCCCeeEEEECC----eEEeeccCCCccee--------EEeeecEEEEccCCCCCCeEEEEEEEeCCc
Q psy15128 51 NGIASFQCVAEGSPLPSVFWTQEG----SQVLMFPGNAYGHL--------HVTQEGTLRIQGVQKEDAGFFVCSALSVAG 118 (292)
Q Consensus 51 g~~~~l~C~~~~~~~~~v~W~~~~----~~~~~~~~~~~~~~--------~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~~ 118 (292)
|+.+.|.|.+.+.|.|.+.|++++ ..+. ..+...... .....+.|.|.+++.+|+|.|+|.|.|..|
T Consensus 1 G~~v~L~C~~~g~P~P~i~W~k~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G 79 (90)
T cd05858 1 GSTVEFVCKVYSDAQPHIQWLKHVEKNGSKYG-PDGLPYVTVLKTAGVNTTDKEMEVLYLRNVTFEDAGEYTCLAGNSIG 79 (90)
T ss_pred CCeEEEEEEEecCCCCEEEEEEecccCCcEeC-CCCCeeEEEeccCCceecCCceeEEEEccCCHHHCEEEEEEEEeCCC
Confidence 678999999999999999999843 2221 010000000 001124799999999999999999999999
Q ss_pred CeeEEEEEEE
Q psy15128 119 STTVRAFLQV 128 (292)
Q Consensus 119 ~~~~~~~l~v 128 (292)
....++.|.|
T Consensus 80 ~~~~~a~L~V 89 (90)
T cd05858 80 ISHHSAWLTV 89 (90)
T ss_pred cccceEEEEE
Confidence 8888877765
No 158
>cd04970 Ig6_Contactin_like Sixth Ig domain of contactin. Ig6_Contactin_like: Sixth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week
Probab=99.42 E-value=4e-13 Score=83.76 Aligned_cols=73 Identities=16% Similarity=0.293 Sum_probs=52.6
Q ss_pred CceEEEeeCCCCCCCC--eEEEeEcCeEeccCCC-ceEEecCCCccccccccccccccccccccceeEEEEeeccccccc
Q psy15128 214 ETALLECGPPKGQPEP--TLHWKKNGQFIDLESS-KRVSILGDPWFDSRRSRSIFGSVLGALSDDQWKLIAKNIRNQQQH 290 (292)
Q Consensus 214 ~~~~l~C~~~~~~p~~--~~~W~~~g~~~~~~~~-~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~a~n~~g~~~~ 290 (292)
+.+.|.|.+ .+.|.+ .+.|+++|+++..... .++..... ......|.|..++..|+|.|+|.|.|.+|.+++
T Consensus 1 e~~~L~C~~-~g~P~p~i~~~W~~~g~~i~~~~~~~~~~~~~~----~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~~ 75 (85)
T cd04970 1 ESITLQCHA-SHDPTLDLTFTWSFNGVPIDFDKDGGHYRRVGG----KDSNGDLMIRNAQLKHAGKYTCTAQTVVDSLSA 75 (85)
T ss_pred CcEEEEEEE-ecCCCCCeEEEEEECCeEeeccCCCccEEEEec----ccccceEEEccCCHHhCeeeEEEEecCCCcEEE
Confidence 578999999 788876 6799999998853222 11111000 012236899999999999999999999998765
Q ss_pred C
Q psy15128 291 G 291 (292)
Q Consensus 291 ~ 291 (292)
+
T Consensus 76 ~ 76 (85)
T cd04970 76 S 76 (85)
T ss_pred E
Confidence 3
No 159
>cd05752 Ig1_FcgammaR_like Frst immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins. Ig1_FcgammaR_like: domain similar to the first immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.
Probab=99.42 E-value=1.7e-12 Score=78.74 Aligned_cols=67 Identities=19% Similarity=0.343 Sum_probs=55.0
Q ss_pred CcEEeCCCccEEecCCcEEEEEEEeeeCC-CeeEEEECCeEEeeccCCCcceeEEeeecEEEEccCCCCCCeEEEEEEEe
Q psy15128 37 PSFVVRPQDQKVGLNGIASFQCVAEGSPL-PSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALS 115 (292)
Q Consensus 37 p~~~~~~~~~~~~~g~~~~l~C~~~~~~~-~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~ 115 (292)
|.+.+.|....+.+|++++|.|.+.+.|. ..+.|++++..+. .....|.|.++ .+|+|.|+|.+.+
T Consensus 1 ~vv~~~P~~~~v~~G~~V~L~C~~~~~p~~~~~~W~kng~~l~------------~~~~~l~i~~~-~~dsG~Y~C~a~~ 67 (78)
T cd05752 1 AVVSLDPPWTTIFQGEKVTLTCNGFNSPEQNSTQWYHNGKLLE------------TTTNSYRIRAA-NNDSGEYRCQTQG 67 (78)
T ss_pred CeEEeCCCCeEeeCCCCEEEEEeCCCCCCCccEEEEECCEEee------------ccCCeEEEeec-ccCCEEeEEECCC
Confidence 45566777888999999999999988765 4799999998652 12457899999 9999999999976
Q ss_pred C
Q psy15128 116 V 116 (292)
Q Consensus 116 ~ 116 (292)
.
T Consensus 68 ~ 68 (78)
T cd05752 68 S 68 (78)
T ss_pred C
Confidence 4
No 160
>cd05771 IgC_Tapasin_R Tapasin-R immunoglobulin-like domain. IgC_Tapasin_R: Immunoglobulin-like domain on Tapasin-R. Tapasin is a V-C1 (variable-constant) immunoglobulin superfamily molecule present in the endoplasmic reticulum (ER), where it links MHC class I molecules to the transporter associated with antigen processing (TAP). Tapasin-R is a tapasin-related protein that contains similar structural motifs to Tapasin, with some marked differences, especially in the V domain, transmembrane and cytoplasmic regions. The majority of Tapasin-R is located within the ER; however, there may be some expression of Tapasin-R at the cell surface. Tapasin-R lacks an obvious ER retention signal.
Probab=99.41 E-value=1.5e-11 Score=84.34 Aligned_cols=77 Identities=21% Similarity=0.422 Sum_probs=60.1
Q ss_pred EEEEccCCCCCCeEEEEEEEeCCcCeeEEEEEEEEeecCCCCCeEEeCCCCceecCCCeEEEEeEeccC-CC-CceEEEe
Q psy15128 95 TLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVTSVEDTPPPIVQVGPSNQTLPLHSVAFLPCQAVGS-PP-PHIRWYK 172 (292)
Q Consensus 95 ~l~i~~~~~~d~g~Y~C~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~-p~-~~~~W~~ 172 (292)
.|+|.+++.+|+|.|+|.+.+..+.....+.|.+.. +|.+.+.+.......|+.+.|.|.+.++ |. +.+.|++
T Consensus 2 sL~i~~v~~~D~G~Y~C~~~~~~~~~~~~~~l~v~~-----~P~v~~~~~~~~~~~~~~~~L~C~a~g~~P~~~~i~W~~ 76 (139)
T cd05771 2 SLTLPGLTVHDEGTYICSVSTPPHQAQQIIQLSVSE-----PPRVRLSLEKLVSMIEEPQTLICHIAGYYPLDVQVEWTR 76 (139)
T ss_pred eEEECCCCHHHCEEEEEEEEccCcceeeEEEEEEec-----CCceEEeCCCceeecCCcEEEEEEECCCCCCCeEEEEEE
Confidence 689999999999999999998777777777777653 4555555554444578899999999886 54 4799999
Q ss_pred CCee
Q psy15128 173 NGNS 176 (292)
Q Consensus 173 ~~~~ 176 (292)
++..
T Consensus 77 ~g~~ 80 (139)
T cd05771 77 EPPG 80 (139)
T ss_pred CCCC
Confidence 9864
No 161
>cd05749 Ig2_Tyro3_like Second immunoglobulin (Ig)-like domain of Axl/Tyro3 receptor tyrosine kinases (RTKs). Ig2_Tyro3_like: the second immunoglobulin (Ig)-like domain in the Axl/Tyro3 family of receptor tyrosine kinases (RTKs). This family includes Axl (also known as Ark, Ufo, and Tyro7), Tyro3 (also known as Sky, Rse, Brt, Dtk, and Tif), and Mer (also known as Nyk, c-Eyk, and Tyro12). Axl/Tyro3 family receptors have an extracellular portion with two Ig-like domains followed by two fibronectin-types III (FNIII) domains, a membrane-spanning single helix, and a cytoplasmic tyrosine kinase domain. Axl, Tyro3 and Mer are widely expressed in adult tissues, though they show higher expression in the brain, in the lymphatic and vascular systems, and in the testis. Axl, Tyro3, and Mer bind the vitamin K dependent protein Gas6 with high affinity, and in doing so activate their tyrosine kinase activity. Axl/Gas6 signaling may play a part in cell adhesion processes, prevention of apoptosis, and c
Probab=99.40 E-value=3.2e-12 Score=78.06 Aligned_cols=71 Identities=31% Similarity=0.534 Sum_probs=56.0
Q ss_pred eCCCccEEecCCcEEEEEEEeeeCCC-eeEEEECCeEEeeccCCCcceeEEeeecEEEEccCCCCCCeEEEEEEEeCCcC
Q psy15128 41 VRPQDQKVGLNGIASFQCVAEGSPLP-SVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGS 119 (292)
Q Consensus 41 ~~~~~~~~~~g~~~~l~C~~~~~~~~-~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~~~ 119 (292)
..|....+.+|+++.|.|.+.|.|.| .|.|++++..+.. . . ....+.|.|..+ .|.|.|.|.|+|..|.
T Consensus 3 ~~P~~~~v~~G~~v~l~C~a~G~P~P~~I~W~k~g~~l~~----~---~-~~~~s~L~i~~~--~d~g~Y~C~A~N~~G~ 72 (81)
T cd05749 3 VEPEDLSVTANTPFNLTCQAVGPPEPVEILWWQGGSPLGD----P---P-APSPSVLNVPGL--NETSKFSCEAHNAKGV 72 (81)
T ss_pred CCCCceEEcCCCCEEEEEEeeeecCCeEEEEEECCEECCC----C---C-CCCCCEEEEccc--cCCeEEEEEEEeccCc
Confidence 45667888999999999999999999 7999999987632 0 0 112357888876 4789999999999886
Q ss_pred ee
Q psy15128 120 TT 121 (292)
Q Consensus 120 ~~ 121 (292)
..
T Consensus 73 ~~ 74 (81)
T cd05749 73 TT 74 (81)
T ss_pred EE
Confidence 54
No 162
>cd05742 Ig1_VEGFR_like First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor (R) and similar proteins. Ig1_VEGFR_like: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R) related proteins. The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF-A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF
Probab=99.40 E-value=2.8e-13 Score=84.28 Aligned_cols=75 Identities=16% Similarity=0.160 Sum_probs=53.5
Q ss_pred CCceEEEeeCCCCC--CCCeEEEeEcCeEeccCCCce-EEecCCCccccccccccccccccccccceeEEEEeecccccc
Q psy15128 213 GETALLECGPPKGQ--PEPTLHWKKNGQFIDLESSKR-VSILGDPWFDSRRSRSIFGSVLGALSDDQWKLIAKNIRNQQQ 289 (292)
Q Consensus 213 g~~~~l~C~~~~~~--p~~~~~W~~~g~~~~~~~~~~-~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~a~n~~g~~~ 289 (292)
|+.+.|.|.+ .+. |.+.|.|.++++.+....... ...... .......|.|..++..|+|.|+|.|+|..|+++
T Consensus 1 Ge~~~L~C~~-~g~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~---~~~~~s~L~I~~v~~~DsG~Y~C~a~n~~~~~~ 76 (84)
T cd05742 1 GETLVLNCTV-LTELNEGVDFQWTYPGKKRGRGKSMVTRQSLSE---ATELSSTLTIPNATLKDSGTYTCAASSGTMDQK 76 (84)
T ss_pred CCeEEEEEEE-EeCCCccEEEEEecCCcccCCceEeeccccccc---ceEEEEEEEECCCChhhCEEEEEEEccCCCceE
Confidence 7899999999 777 889999999887653111100 000001 112234799999999999999999999999887
Q ss_pred cC
Q psy15128 290 HG 291 (292)
Q Consensus 290 ~~ 291 (292)
.+
T Consensus 77 ~s 78 (84)
T cd05742 77 ES 78 (84)
T ss_pred EE
Confidence 65
No 163
>cd05736 Ig2_Follistatin_like Second immunoglobulin (Ig)-like domain of a follistatin-like molecule encoded by the Mahya gene and similar proteins. Ig2_Follistatin_like: domain similar to the second immunoglobulin (Ig)-like domain found in a follistatin-like molecule encoded by the CNS-related Mahya gene. Mahya genes have been retained in certain Bilaterian branches during evolution. They are conserved in Hymenoptera and Deuterostomes, but are absent from other metazoan species such as fruit fly and nematode. Mahya proteins are secretory, with a follistatin-like domain (Kazal-type serine/threonine protease inhibitor domain and EF-hand calcium-binding domain), two Ig-like domains, and a novel C-terminal domain. Mahya may be involved in learning and memory and in processing of sensory information in Hymenoptera and vertebrates. Follistatin is a secreted, multidomain protein that binds activins with high affinity and antagonizes their signaling.
Probab=99.39 E-value=7.2e-12 Score=76.33 Aligned_cols=73 Identities=33% Similarity=0.521 Sum_probs=56.5
Q ss_pred EEEEEEEeeeCCCeeEEEECCeEEeeccCCCcceeEE-eeecEEEEccCCCCCCeEEEEEEEeCCcCeeEEEEEEEE
Q psy15128 54 ASFQCVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHV-TQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVT 129 (292)
Q Consensus 54 ~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~-~~~~~l~i~~~~~~d~g~Y~C~~~~~~~~~~~~~~l~v~ 129 (292)
+.|.|.+.|.|.|.+.|+|++..+... .. .+... .....|.|.++..+|.|.|+|.+.|..|.....+.|.|.
T Consensus 1 ~~L~C~v~g~P~p~v~W~k~~~~l~~~--~~-~~~~~~~~~~~l~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~V~ 74 (76)
T cd05736 1 ASLRCHAEGIPLPRLTWLKNGMDITPK--LS-KQLTLIANGSELHISNVRYEDTGAYTCIAKNEAGVDEDISSLFVE 74 (76)
T ss_pred CEeEeEeeecCCCEEEEEECCEECCCC--CC-ccEEEeCCCCEEEECcCCcccCEEEEEEEEcCCCCcceEEEEEEE
Confidence 368999999999999999998865321 11 12222 223479999999999999999999999988877777664
No 164
>cd05765 Ig_3 Subgroup of the immunoglobulin (Ig) superfamily. Ig_3: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=99.39 E-value=1.2e-12 Score=81.08 Aligned_cols=72 Identities=17% Similarity=0.236 Sum_probs=50.6
Q ss_pred CCceEEEeeCCCCCCCCeEEEeEcCe---EeccCCCceEEecCCCccccccccccccccccccccceeEEEEeecccccc
Q psy15128 213 GETALLECGPPKGQPEPTLHWKKNGQ---FIDLESSKRVSILGDPWFDSRRSRSIFGSVLGALSDDQWKLIAKNIRNQQQ 289 (292)
Q Consensus 213 g~~~~l~C~~~~~~p~~~~~W~~~g~---~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~a~n~~g~~~ 289 (292)
|+.+.|.|.+ .|.|.|.+.|++++. .+....... ...+.......|.|..+..+|+|.|.|.|.|..|+++
T Consensus 1 G~~v~l~C~~-~g~P~p~v~W~k~~~~~~~~~~~~~~~-----~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~ 74 (81)
T cd05765 1 GETASFHCDV-TGRPPPEITWEKQVHGKENLIMRPNHV-----RGNVVVTNIGQLVIYNAQPQDAGLYTCTARNSGGLLR 74 (81)
T ss_pred CCcEEEEeec-cccCCCcEEEEecCCCCcceeecCCcc-----cCCEEEccccEEEEccCCcccCEEEEEEEecCCceEE
Confidence 7899999998 899999999999732 111000000 0001111223688999999999999999999999876
Q ss_pred c
Q psy15128 290 H 290 (292)
Q Consensus 290 ~ 290 (292)
.
T Consensus 75 ~ 75 (81)
T cd05765 75 A 75 (81)
T ss_pred E
Confidence 4
No 165
>cd05734 Ig7_DSCAM Seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM). Ig7_DSCAM: the seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.
Probab=99.38 E-value=5.1e-12 Score=77.58 Aligned_cols=67 Identities=25% Similarity=0.574 Sum_probs=50.0
Q ss_pred EEEEEEEeeeCCCeeEEEECCeEEeecc--C-CCcceeEEeeecEEEEccCCCCCCeEEEEEEEeCCcCe
Q psy15128 54 ASFQCVAEGSPLPSVFWTQEGSQVLMFP--G-NAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGST 120 (292)
Q Consensus 54 ~~l~C~~~~~~~~~v~W~~~~~~~~~~~--~-~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~~~~ 120 (292)
++|.|.+.|.|.|.+.|++++....... . ....+.....++.|.|.++..+|+|.|.|.|.|..|..
T Consensus 1 v~l~C~~~G~P~P~v~W~~~~~~~~~~~~~~~~~~~r~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~ 70 (79)
T cd05734 1 VTLNCSAEGYPPPTIVWKHSKGRGHPQHTHTCCLAGRIQLLSNGSLLIKHVLEEDSGYYLCKVSNDVGAD 70 (79)
T ss_pred CEeEeeCeEeCCCEEEEEECCCccccccccccccCCCEEEecCCeEEECcCCcccCEEEEEEEEeCCCCC
Confidence 4799999999999999999754321110 0 12233444456789999999999999999999998865
No 166
>cd05734 Ig7_DSCAM Seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM). Ig7_DSCAM: the seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.
Probab=99.37 E-value=8.5e-13 Score=81.05 Aligned_cols=65 Identities=18% Similarity=0.275 Sum_probs=47.4
Q ss_pred eEEEeeCCCCCCCCeEEEeEcCeEeccC------CCceEEecCCCccccccccccccccccccccceeEEEEeecccccc
Q psy15128 216 ALLECGPPKGQPEPTLHWKKNGQFIDLE------SSKRVSILGDPWFDSRRSRSIFGSVLGALSDDQWKLIAKNIRNQQQ 289 (292)
Q Consensus 216 ~~l~C~~~~~~p~~~~~W~~~g~~~~~~------~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~a~n~~g~~~ 289 (292)
++|.|.+ .|.|.|.+.|++++...... ...++... ....|.|..+..+|+|.|.|.|.|..|.+.
T Consensus 1 v~l~C~~-~G~P~P~v~W~~~~~~~~~~~~~~~~~~~r~~~~--------~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~ 71 (79)
T cd05734 1 VTLNCSA-EGYPPPTIVWKHSKGRGHPQHTHTCCLAGRIQLL--------SNGSLLIKHVLEEDSGYYLCKVSNDVGADA 71 (79)
T ss_pred CEeEeeC-eEeCCCEEEEEECCCccccccccccccCCCEEEe--------cCCeEEECcCCcccCEEEEEEEEeCCCCCC
Confidence 5799998 89999999999964321100 11222222 223688999999999999999999999874
No 167
>cd05742 Ig1_VEGFR_like First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor (R) and similar proteins. Ig1_VEGFR_like: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R) related proteins. The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF-A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF
Probab=99.37 E-value=4.6e-12 Score=78.79 Aligned_cols=78 Identities=15% Similarity=0.139 Sum_probs=56.6
Q ss_pred CCcEEEEEEEeee--CCCeeEEEECCeEEeeccC---CCcceeEEeeecEEEEccCCCCCCeEEEEEEEeCCcCeeEEEE
Q psy15128 51 NGIASFQCVAEGS--PLPSVFWTQEGSQVLMFPG---NAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRAF 125 (292)
Q Consensus 51 g~~~~l~C~~~~~--~~~~v~W~~~~~~~~~~~~---~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~~~~~~~~~ 125 (292)
|+.+.|.|.+.+. |.+.+.|++++........ ...........+.|.|.+++.+|+|.|+|.+.|..+....++.
T Consensus 1 Ge~~~L~C~~~g~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~v~~~DsG~Y~C~a~n~~~~~~~s~~ 80 (84)
T cd05742 1 GETLVLNCTVLTELNEGVDFQWTYPGKKRGRGKSMVTRQSLSEATELSSTLTIPNATLKDSGTYTCAASSGTMDQKESTK 80 (84)
T ss_pred CCeEEEEEEEEeCCCccEEEEEecCCcccCCceEeecccccccceEEEEEEEECCCChhhCEEEEEEEccCCCceEEEEE
Confidence 6889999999998 7889999987654321100 0000111223458999999999999999999999888777777
Q ss_pred EEE
Q psy15128 126 LQV 128 (292)
Q Consensus 126 l~v 128 (292)
|.|
T Consensus 81 v~v 83 (84)
T cd05742 81 VNI 83 (84)
T ss_pred EEE
Confidence 654
No 168
>cd04979 Ig_Semaphorin_C Immunoglobulin (Ig)-like domain of semaphorin. Ig_Semaphorin_C; Immunoglobulin (Ig)-like domain in semaphorins. Semaphorins are transmembrane protein that have important roles in a variety of tissues. Functionally, semaphorins were initially characterized for their importance in the development of the nervous system and in axonal guidance. Later they have been found to be important for the formation and functioning of the cardiovascular, endocrine, gastrointestinal, hepatic, immune, musculoskeletal, renal, reproductive, and respiratory systems. Semaphorins function through binding to their receptors and transmembrane semaphorins also serves as receptors themselves. Although molecular mechanism of semaphorins is poorly understood, the Ig-like domains may involve in ligand binding or dimerization.
Probab=99.37 E-value=2.6e-12 Score=80.89 Aligned_cols=74 Identities=16% Similarity=0.282 Sum_probs=55.7
Q ss_pred CcceEEeCCCceEEEeeCCCCCCCCeEEEeEcCeEeccCC--CceEEecCCCccccccccccccccccccccceeEEEEe
Q psy15128 205 PKDTRVASGETALLECGPPKGQPEPTLHWKKNGQFIDLES--SKRVSILGDPWFDSRRSRSIFGSVLGALSDDQWKLIAK 282 (292)
Q Consensus 205 ~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~g~~~~~~~--~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~a~ 282 (292)
+....+.+|+.+.|.|.+ .+ |.+.+.|++++..+.... ..++.... ..|.|..+..+|+|.|.|.|.
T Consensus 3 ~~~~~v~~g~~v~L~C~~-~~-p~~~i~W~k~~~~~~~~~~~~~~~~~~~---------~~L~I~~~~~~D~G~Y~C~a~ 71 (89)
T cd04979 3 EKVVTVVEGNSVFLECSP-KS-NLASVVWLFQGGPLQRKEEPEERLLVTE---------DGLLIRSVSPADAGVYTCQSV 71 (89)
T ss_pred ceEEEEECCCcEEEEEeC-CC-CCceEEEEECCcccccccCcCceEEEcC---------CCEEEccCCHHHCEEEEEEEe
Confidence 346678999999999997 56 778999999998764322 12333322 248899999999999999999
Q ss_pred ecccccc
Q psy15128 283 NIRNQQQ 289 (292)
Q Consensus 283 n~~g~~~ 289 (292)
|..+...
T Consensus 72 ~~~~~~~ 78 (89)
T cd04979 72 EHGFKQT 78 (89)
T ss_pred cCcccee
Confidence 8776543
No 169
>cd05882 Ig1_Necl-1 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). Ig1_Necl-1: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-1, Necl-1 (also known as celll adhesion molecule 3 (CADM3), SynCAM2, IGSF4). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the format
Probab=99.37 E-value=1.6e-11 Score=77.51 Aligned_cols=72 Identities=25% Similarity=0.483 Sum_probs=53.6
Q ss_pred CccEEecCCcEEEEEEEeeeCCCeeEEEECCeEEeeccCC---CcceeEEe----eecEEEEccCCCCCCeEEEEEEEe
Q psy15128 44 QDQKVGLNGIASFQCVAEGSPLPSVFWTQEGSQVLMFPGN---AYGHLHVT----QEGTLRIQGVQKEDAGFFVCSALS 115 (292)
Q Consensus 44 ~~~~~~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~---~~~~~~~~----~~~~l~i~~~~~~d~g~Y~C~~~~ 115 (292)
.+..+.+|+++.|.|.+.+.|.+.+.|++++..+...... ...+.... ....|.|.+++.+|.|.|+|.+..
T Consensus 5 ~~~tv~~G~tv~L~C~v~g~~~~~v~W~k~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~nV~~~D~G~YtC~~~t 83 (95)
T cd05882 5 QDETVAVGGTVTLKCGVKEHDNSSLQWSNTAQQTLYFGEKRALRDNRIQLVKSTPTELIISISNVQLSDEGEYTCSIFT 83 (95)
T ss_pred ccEEEecCCcEEEEEEEeCCCCCeEEEeccCccEEEeCCeEEEeCCeEEEEeCCCceEEEEECCCCcccCEEEEEEEEe
Confidence 4677899999999999999999999999987644221111 01222211 235899999999999999999986
No 170
>cd05861 Ig1_PDGFR-alphabeta Frst immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b). Ig1_PDGFR-alphabeta: The first immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b). PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFRalpha binds to all three PDGFs, whereas the PDGFRbeta binds only to PDGF-B. PDGFRs alpha and beta have similar organization: an extracellular component with five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFRalpha and PDGFRbeta are essential for normal development.
Probab=99.37 E-value=8.4e-12 Score=77.27 Aligned_cols=77 Identities=18% Similarity=0.302 Sum_probs=52.7
Q ss_pred CCcEEEEEEEeeeCCCeeEEEECCeEEeeccCCCccee---EEeeecEEEEccCCCCCCeEEEEEEEeCCc--CeeEEEE
Q psy15128 51 NGIASFQCVAEGSPLPSVFWTQEGSQVLMFPGNAYGHL---HVTQEGTLRIQGVQKEDAGFFVCSALSVAG--STTVRAF 125 (292)
Q Consensus 51 g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~---~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~~--~~~~~~~ 125 (292)
|++++|.|.+.+.|.+.+.|++.++...... ...... .......|.|.+++.+|+|.|+|.+.+..+ .....+.
T Consensus 1 Ge~~~l~C~~~~~~~~~~~W~~~~~~~~~~~-~~~~~~~~~~~~~~s~L~I~~~~~~DsG~Y~C~a~n~~~~~~~~~sv~ 79 (84)
T cd05861 1 GETITVNCIVQGNEVVDFSWTYPGKDIGKGI-PEVEEVKVPATTLRSTLTFPHATVEDSGTYECAAHESTQDQKAFKKVN 79 (84)
T ss_pred CCcEEEEEEEECCCccEEEEEECCccCCCCc-eEEEEEecCCcEEEEEEEECCCCcCCCEEEEEEEEECccCcceeEEEE
Confidence 7899999999998889999998765321000 000001 112245899999999999999999998765 3444444
Q ss_pred EEE
Q psy15128 126 LQV 128 (292)
Q Consensus 126 l~v 128 (292)
|+|
T Consensus 80 i~V 82 (84)
T cd05861 80 ITV 82 (84)
T ss_pred EEE
Confidence 444
No 171
>cd05754 Ig3_Perlecan_like Third immunoglobulin (Ig)-like domain found in Perlecan and similar proteins. Ig3_Perlecan_like: domain similar to the third immunoglobulin (Ig)-like domain found in Perlecan. Perlecan is a large multi-domain heparin sulfate proteoglycan, important in tissue development and organogenesis. Perlecan can be represented as 5 major portions; its fourth major portion (domain IV) is a tandem repeat of immunoglobulin-like domains (Ig2-Ig15), which can vary in size due to alternative splicing. Perlecan binds many cellular and extracellular ligands. Its domain IV region has many binding sites. Some of these have been mapped at the level of individual Ig-like domains, including a site restricted to the Ig5 domain for heparin/sulfatide, a site restricted to the Ig3 domain for nidogen-1 and nidogen-2, a site restricted to Ig4-5 for fibronectin, and sites restricted to Ig2 and to Ig13-15 for fibulin-2.
Probab=99.37 E-value=2e-12 Score=80.64 Aligned_cols=74 Identities=14% Similarity=0.188 Sum_probs=57.7
Q ss_pred CcceEEeCCCceEEEeeCCCCCCCCeEEEeEcCeEeccCCCceEEecCCCccccccccccccccccccccceeEEEEeec
Q psy15128 205 PKDTRVASGETALLECGPPKGQPEPTLHWKKNGQFIDLESSKRVSILGDPWFDSRRSRSIFGSVLGALSDDQWKLIAKNI 284 (292)
Q Consensus 205 ~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~a~n~ 284 (292)
+....+.+|+.++|.|.+..+.|.+.+.|++++..++.. .. . ....|.|..+..+|+|.|.|.|.|.
T Consensus 8 p~~~~v~~G~~v~L~C~~~~~~~~~~i~W~~~~~~~~~~----~~-~--------~~~~L~I~~v~~~DsG~Y~C~a~n~ 74 (85)
T cd05754 8 PRSQEVRPGADVSFICRAKSKSPAYTLVWTRVGGGLPSR----AM-D--------FNGILTIRNVQLSDAGTYVCTGSNM 74 (85)
T ss_pred CCceEEcCCCCEEEEEEcCCCCCCcEEEEEECCCcCCCc----cc-c--------cCCEEEECCCCHHHCEEEEEEEecc
Confidence 456688999999999998445788899999988665311 11 0 1226889999999999999999999
Q ss_pred ccccccC
Q psy15128 285 RNQQQHG 291 (292)
Q Consensus 285 ~g~~~~~ 291 (292)
.|....+
T Consensus 75 ~g~~~~~ 81 (85)
T cd05754 75 LDTDEAT 81 (85)
T ss_pred CCeEeEE
Confidence 9988653
No 172
>cd05898 Ig5_KIRREL3 Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2). Ig5_KIRREL3: the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1). These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development. Neph1 and 2 may mediate axonal guidance and synapse formation in certain areas of the CNS. In the kidney, they participate in the formation of the slit diaphragm.
Probab=99.37 E-value=3.9e-12 Score=80.12 Aligned_cols=83 Identities=13% Similarity=0.166 Sum_probs=61.3
Q ss_pred cceEEeCCCceEEEeeCCCCCCCC-eEEEeEcCeEeccCCCceEEecCCCccccccccccccccccccc-cceeEEEEee
Q psy15128 206 KDTRVASGETALLECGPPKGQPEP-TLHWKKNGQFIDLESSKRVSILGDPWFDSRRSRSIFGSVLGALS-DDQWKLIAKN 283 (292)
Q Consensus 206 ~~~~~~~g~~~~l~C~~~~~~p~~-~~~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~-~g~y~C~a~n 283 (292)
....+.+|+.++|.|.+ .+.|+| .|.|..++..|......++.+..... .......|.|..+...| .|.|.|.|.|
T Consensus 9 ~s~~~~~G~~~~L~C~~-~s~P~P~~i~W~w~~~~i~~~~~~r~~I~~~~~-~~g~~S~L~I~~~~~~d~~g~Y~C~a~N 86 (98)
T cd05898 9 QVQYAVRGERGKVKCFI-GSTPPPDRIAWAWKENVLESGTSERYTVERTST-GSGVLSTLTINNIMEADFQTHYNCTAWN 86 (98)
T ss_pred ceEEEeCCCcEEEEEEE-ccCCCCcEEEEEEccccccCCCCCCEEEEEEcc-CCCcEEEEEECCCccccCCcEEEEEEEe
Confidence 45678899999999998 566665 78998888877544445655543321 12344579999988777 7899999999
Q ss_pred ccccccc
Q psy15128 284 IRNQQQH 290 (292)
Q Consensus 284 ~~g~~~~ 290 (292)
..|+++.
T Consensus 87 ~~G~d~~ 93 (98)
T cd05898 87 SFGSGTA 93 (98)
T ss_pred CCccceE
Confidence 9999864
No 173
>cd05757 Ig2_IL1R_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins. Ig2_IL1R_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three IG-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta. This group also contains ILIR-like 1 (IL1
Probab=99.36 E-value=1.9e-12 Score=81.13 Aligned_cols=73 Identities=10% Similarity=0.162 Sum_probs=56.2
Q ss_pred ceEEeCCCceEEEeeCCCCC----CCCeEEEeEcCeEeccCCCceEEecCCCccccccccccccccccccccceeEEEEe
Q psy15128 207 DTRVASGETALLECGPPKGQ----PEPTLHWKKNGQFIDLESSKRVSILGDPWFDSRRSRSIFGSVLGALSDDQWKLIAK 282 (292)
Q Consensus 207 ~~~~~~g~~~~l~C~~~~~~----p~~~~~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~a~ 282 (292)
...+.+|..+.|.|.+..+. |.+.+.|+|+++++... .+... . ...|.|..+..+|+|.|+|.|.
T Consensus 4 ~~~~~~g~~~~l~Cp~~~~~~~~~~~p~i~Wyk~~~~i~~~--~~~~~-~--------~~~L~I~~v~~~DsG~YtC~~~ 72 (92)
T cd05757 4 KQILFSTKGGKIVCPDLDDFKNENTLPPVQWYKDCKLLEGD--RKRFV-K--------GSKLLIQNVTEEDAGNYTCKLT 72 (92)
T ss_pred eEEEeeccCCEEECCChHHccCCCCCCcEEEeECCEECCCC--ccEEe-c--------CCEEEEeeCChhhCEEEEEEEE
Confidence 45678999999999864333 57899999999998522 22221 1 1268899999999999999999
Q ss_pred eccccccc
Q psy15128 283 NIRNQQQH 290 (292)
Q Consensus 283 n~~g~~~~ 290 (292)
|.+|....
T Consensus 73 n~~~~~~~ 80 (92)
T cd05757 73 FTHNGKQY 80 (92)
T ss_pred ecCCCEEE
Confidence 99888754
No 174
>cd05750 Ig_Pro_neuregulin Immunoglobulin (Ig)-like domain in neuregulins (NRGs). Ig_Pro_neuregulin: immunoglobulin (Ig)-like domain in neuregulins (NRGs). NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. There are four members of the neuregulin gene family (NRG1, -2, -3, and -4). The NRG-1 protein, binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. The other NRGs proteins bind one or the other or both of these ErbBs. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates processes such as target cell differentiation, and Schwann cell surv
Probab=99.36 E-value=5.2e-12 Score=76.88 Aligned_cols=71 Identities=20% Similarity=0.352 Sum_probs=52.1
Q ss_pred EEEEEEEee-eCCCeeEEEECCeEEeeccCCCccee-EEeeecEEEEccCCCCCCeEEEEEEEeCCcCeeEEE
Q psy15128 54 ASFQCVAEG-SPLPSVFWTQEGSQVLMFPGNAYGHL-HVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRA 124 (292)
Q Consensus 54 ~~l~C~~~~-~~~~~v~W~~~~~~~~~~~~~~~~~~-~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~~~~~~~~ 124 (292)
+.|.|.+.+ .|.+.+.|++++..+........... .......|.|.++..+|.|.|+|.+.|..|.....+
T Consensus 1 ~~l~C~~~g~~P~p~~~W~k~g~~l~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~ 73 (75)
T cd05750 1 LVLKCEATSEYPSLRFKWFKDGKELNRKNKPRNIKIRNKKKNSELQINKAKLADSGEYTCVVENILGNDTVTA 73 (75)
T ss_pred CEEEEEccCCCCCceEEEEcCCeeccccCCcceEEEEecCceEEEEEccCCcccCeEEEEEEEEcCCceeEEE
Confidence 469999999 89999999999887642221110001 112245899999999999999999999998766554
No 175
>cd04967 Ig1_Contactin First Ig domain of contactin. Ig1_Contactin: First Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 weeks postnata
Probab=99.32 E-value=4.3e-11 Score=75.59 Aligned_cols=80 Identities=30% Similarity=0.527 Sum_probs=56.8
Q ss_pred CcEEeCCCccEEe---cCCcEEEEEEEeeeCCCeeEEEECCeEEeeccCCCcceeEEeeecEEEEccCC-CCCCeEEEEE
Q psy15128 37 PSFVVRPQDQKVG---LNGIASFQCVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQ-KEDAGFFVCS 112 (292)
Q Consensus 37 p~~~~~~~~~~~~---~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~-~~d~g~Y~C~ 112 (292)
|.+...|....+. .|+.+.|.|.+.|.|.+.++|++++..+..... ... ....+.|.|.++. .+|+|.|+|.
T Consensus 2 P~f~~~p~~~~~~~~~~~~~~~l~C~~~g~p~p~i~W~k~~~~l~~~~~---~~~-~~~~~~L~i~~~~~~~d~G~Y~C~ 77 (91)
T cd04967 2 PVFEEQPDDTIFPEESDEGKVSLNCRARGSPPPTYRWLMNGTEIDDEPD---SRY-SLVGGNLVISNPSKAKDAGRYQCL 77 (91)
T ss_pred CeeEeCCCCEEccCCCCCCEEEEEEeeeEcCCCEEEEEECCEECCCCCC---CCE-EEECCEEEEecCCccCCCEEEEEE
Confidence 3445555554433 346799999999999999999999987632211 122 2235688898876 5899999999
Q ss_pred EEeCCcCe
Q psy15128 113 ALSVAGST 120 (292)
Q Consensus 113 ~~~~~~~~ 120 (292)
+.|..|..
T Consensus 78 a~N~~G~~ 85 (91)
T cd04967 78 ASNIVGTV 85 (91)
T ss_pred EEcCCCEE
Confidence 99988754
No 176
>cd05873 Ig_Sema4D_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4D. Ig_Sema4D_like; Immunoglobulin (Ig)-like domain of Sema4D. Sema4D is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4D has extracellular Sema and Ig domains, a transmembrane domain, and a short cytoplasmic domain. Sema4D plays a part in the development of GABAergic synapses. Sema4D in addition is an immune semaphorin. It is abundant on resting T cells; its expression is weak on resting B cells and antigen presenting cells (APCs), but is upregulated by various stimuli. The receptor used by Sema4D in the immune system is CD72. Sem4D enhances the activation of B cells and DCs through binding CD72, perhaps by reducing CD72s inhibitory signals. The receptor used by Sema4D in the non-lymphatic tissues is plexin-B1. Sem4D is anchored to the cell surface but its extracellular domain can be released from the cell surface by a metalloproteas
Probab=99.32 E-value=3.6e-11 Score=74.04 Aligned_cols=70 Identities=20% Similarity=0.392 Sum_probs=54.8
Q ss_pred CCCccEEecCCcEEEEEEEeeeCCCeeEEEECCeEEeeccCCCcceeEEeeecEEEEccCCCCCCeEEEEEEEeCC
Q psy15128 42 RPQDQKVGLNGIASFQCVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVA 117 (292)
Q Consensus 42 ~~~~~~~~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~ 117 (292)
.|....+..|+++.|.|.+.+ +.+.+.|++++..+.... .+. ...++.|.|.+++.+|+|.|+|.+....
T Consensus 2 ~P~~~~v~~G~~v~L~C~~~~-~~~~i~W~~ng~~i~~~~----~r~-~~~~~~L~I~nv~~~DsG~Y~C~a~e~~ 71 (87)
T cd05873 2 DPRQRTFKLGNNAELKCSPKS-NLARVVWKFDGKVLTPES----AKY-LLYRDGLLIFNASEADAGRYQCLSVEKS 71 (87)
T ss_pred CcceEEEECCCCEEEEEECCC-CCCeEEEEECCEECCCCC----ceE-EEECCcEEEeCCCHHHCEEEEEEEEecc
Confidence 355678899999999999854 677999999998764221 223 2345689999999999999999998763
No 177
>cd05752 Ig1_FcgammaR_like Frst immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins. Ig1_FcgammaR_like: domain similar to the first immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.
Probab=99.30 E-value=1.1e-11 Score=75.22 Aligned_cols=61 Identities=20% Similarity=0.361 Sum_probs=48.4
Q ss_pred CcceEEeCCCceEEEeeCCCCCCC-CeEEEeEcCeEeccCCCceEEecCCCccccccccccccccccccccceeEEEEee
Q psy15128 205 PKDTRVASGETALLECGPPKGQPE-PTLHWKKNGQFIDLESSKRVSILGDPWFDSRRSRSIFGSVLGALSDDQWKLIAKN 283 (292)
Q Consensus 205 ~~~~~~~~g~~~~l~C~~~~~~p~-~~~~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~a~n 283 (292)
|+...+.+|++++|.|.+ .+.|. ..+.|++||+.+.. ....|.|..+ .+|+|.|+|.|.|
T Consensus 7 P~~~~v~~G~~V~L~C~~-~~~p~~~~~~W~kng~~l~~-----------------~~~~l~i~~~-~~dsG~Y~C~a~~ 67 (78)
T cd05752 7 PPWTTIFQGEKVTLTCNG-FNSPEQNSTQWYHNGKLLET-----------------TTNSYRIRAA-NNDSGEYRCQTQG 67 (78)
T ss_pred CCCeEeeCCCCEEEEEeC-CCCCCCccEEEEECCEEeec-----------------cCCeEEEeec-ccCCEEeEEECCC
Confidence 456788999999999998 67665 47999999988731 0124667777 9999999999998
Q ss_pred c
Q psy15128 284 I 284 (292)
Q Consensus 284 ~ 284 (292)
.
T Consensus 68 ~ 68 (78)
T cd05752 68 S 68 (78)
T ss_pred C
Confidence 6
No 178
>cd05729 Ig2_FGFR_like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor and similar proteins. Ig2_FGFR_like: domain similar to the second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three Ig-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin
Probab=99.30 E-value=1.7e-11 Score=76.65 Aligned_cols=77 Identities=22% Similarity=0.393 Sum_probs=56.8
Q ss_pred ceEEeCCCceEEEeeCCCCCCCCeEEEeEcCeEeccCCCceEEecCCCccccccccccccccccccccceeEEEEeeccc
Q psy15128 207 DTRVASGETALLECGPPKGQPEPTLHWKKNGQFIDLESSKRVSILGDPWFDSRRSRSIFGSVLGALSDDQWKLIAKNIRN 286 (292)
Q Consensus 207 ~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~a~n~~g 286 (292)
...+..|+.+.|.|.+ .+.|.+.+.|++++..+.... ........ .....|.|..+..+|+|.|.|.|.|..|
T Consensus 3 ~~~~~~G~~~~l~C~~-~~~p~~~v~W~k~~~~~~~~~--~~~~~~~~----~~~~~l~i~~~~~~d~g~Y~C~~~n~~g 75 (85)
T cd05729 3 LHAVPAGSTVRLKCPA-SGNPRPTITWLKDGKPFKKEH--RIGGYKVR----KKKWTLILESVVPSDSGKYTCIVENKYG 75 (85)
T ss_pred eeEecCCCcEEEEEEc-CCCCCCeEEEEECCEECcccC--ceeEEEcc----CcEEEEEEeECCcccCEEEEEEEEECCc
Confidence 3456789999999998 788999999999998875222 11111100 1122577889999999999999999999
Q ss_pred cccc
Q psy15128 287 QQQH 290 (292)
Q Consensus 287 ~~~~ 290 (292)
..+.
T Consensus 76 ~~~~ 79 (85)
T cd05729 76 SINH 79 (85)
T ss_pred eEEE
Confidence 8654
No 179
>cd07701 Ig1_Necl-3 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Ig1_Necl-3: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-3, Necl-3 (also known as cell adhesion molecule 2 (CADM2), SynCAM2, IGSF4D). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-3 accumulates in central and peripheral nervous system tissue, and has been shown to selectively interact with oligodendrocytes.
Probab=99.30 E-value=5.9e-11 Score=75.23 Aligned_cols=83 Identities=24% Similarity=0.414 Sum_probs=57.0
Q ss_pred CCccEEecCCcEEEEEEEeeeCCCeeEEEECCeEEeeccC---CCcceeEE----eeecEEEEccCCCCCCeEEEEEEEe
Q psy15128 43 PQDQKVGLNGIASFQCVAEGSPLPSVFWTQEGSQVLMFPG---NAYGHLHV----TQEGTLRIQGVQKEDAGFFVCSALS 115 (292)
Q Consensus 43 ~~~~~~~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~---~~~~~~~~----~~~~~l~i~~~~~~d~g~Y~C~~~~ 115 (292)
+.++.+.+|+++.|.|.+.+.|.+.+.|++.+..+..... ....+... .....|.|.+++.+|+|.|+|.+.+
T Consensus 4 ~~~v~v~eG~~v~L~C~~~~~p~~~v~W~~~~~~~l~~~~~~~~~~~r~~~~~~~~~~~sL~I~~v~~~DsG~Y~C~~~t 83 (95)
T cd07701 4 TQNVTVVEGGTANLTCRVDQNDNTSLQWSNPAQQTLYFDDKKALRDNRIELVRASWHELSISISDVSLSDEGQYTCSLFT 83 (95)
T ss_pred cceEEEecCCcEEEEEEEecCCceEEEEeCCCCeEEEEcCcccccCCCEEEEECCCCcEEEEECcCCcccCEEEEEEeEe
Confidence 3467789999999999999999999999975443322111 11223222 1235899999999999999999987
Q ss_pred CCcCeeEEEEE
Q psy15128 116 VAGSTTVRAFL 126 (292)
Q Consensus 116 ~~~~~~~~~~l 126 (292)
.... ...+.|
T Consensus 84 ~~~~-~~~~~l 93 (95)
T cd07701 84 MPVK-TSKAYL 93 (95)
T ss_pred ecCc-cEEEEE
Confidence 4322 444444
No 180
>cd05898 Ig5_KIRREL3 Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2). Ig5_KIRREL3: the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1). These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development. Neph1 and 2 may mediate axonal guidance and synapse formation in certain areas of the CNS. In the kidney, they participate in the formation of the slit diaphragm.
Probab=99.30 E-value=9.4e-11 Score=73.90 Aligned_cols=90 Identities=21% Similarity=0.286 Sum_probs=62.9
Q ss_pred CCcEEeCCCccEEecCCcEEEEEEEeeeCCC-eeEEEECCeEEeeccCCCcceeEE----eeecEEEEccCCCCC-CeEE
Q psy15128 36 PPSFVVRPQDQKVGLNGIASFQCVAEGSPLP-SVFWTQEGSQVLMFPGNAYGHLHV----TQEGTLRIQGVQKED-AGFF 109 (292)
Q Consensus 36 ~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~-~v~W~~~~~~~~~~~~~~~~~~~~----~~~~~l~i~~~~~~d-~g~Y 109 (292)
||.+ .......+.+|+.+.|.|.+.+.|.| .+.|.+++..+.......+..... ...+.|.|.++...| .|.|
T Consensus 2 pP~i-~~~~s~~~~~G~~~~L~C~~~s~P~P~~i~W~w~~~~i~~~~~~r~~I~~~~~~~g~~S~L~I~~~~~~d~~g~Y 80 (98)
T cd05898 2 PPII-SSEQVQYAVRGERGKVKCFIGSTPPPDRIAWAWKENVLESGTSERYTVERTSTGSGVLSTLTINNIMEADFQTHY 80 (98)
T ss_pred CCEE-ecCceEEEeCCCcEEEEEEEccCCCCcEEEEEEccccccCCCCCCEEEEEEccCCCcEEEEEECCCccccCCcEE
Confidence 3443 45566778899999999999887776 678988776543221112111111 134589999998766 7999
Q ss_pred EEEEEeCCcCeeEEEEE
Q psy15128 110 VCSALSVAGSTTVRAFL 126 (292)
Q Consensus 110 ~C~~~~~~~~~~~~~~l 126 (292)
.|.|.|..|.....+.|
T Consensus 81 ~C~a~N~~G~d~~~i~L 97 (98)
T cd05898 81 NCTAWNSFGSGTAIIQL 97 (98)
T ss_pred EEEEEeCCccceEEEEe
Confidence 99999999988776654
No 181
>cd05885 Ig2_Necl-4 Second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4)). Ig2_Necl-4: second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1-Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Ig domains are likely to participate in ligand binding and recognition. Necl-4 is expressed on Schwann cells, and plays a key part in initiating peripheral nervous system (PNS) myelination. In injured peripheral nerve cells, the mRNA signal for both Necl-4 and Necl-5 was observed to be elevated. Necl-4 participates in cell-cell adhesion and is proposed to play a role in tumor suppression.
Probab=99.29 E-value=1.1e-11 Score=74.59 Aligned_cols=69 Identities=16% Similarity=0.085 Sum_probs=51.6
Q ss_pred ceEEEeeCCCCCCCCeEEEeEcCeEeccCCCceEEecCCCccccccccccccccccccccceeEEEEeeccccc
Q psy15128 215 TALLECGPPKGQPEPTLHWKKNGQFIDLESSKRVSILGDPWFDSRRSRSIFGSVLGALSDDQWKLIAKNIRNQQ 288 (292)
Q Consensus 215 ~~~l~C~~~~~~p~~~~~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~a~n~~g~~ 288 (292)
.+.|+|.+..+.|++.|.|++++++|.... .....++.+ .....|.+...+..|.+.|+|.|.|.++..
T Consensus 1 ~~~L~C~s~~skP~a~i~W~k~~~~l~~~~---~~~~~~~~~--t~~s~L~~~~~~~Ddg~~~~C~A~n~a~~~ 69 (80)
T cd05885 1 EVELTCLSPRSKPAATLRWYRDRKELKGVI---SQQENGKTV--SVSNTIRFPVDRKDDGAILSCEASHPALVS 69 (80)
T ss_pred CEEEEEeCCCccCCCeEEEEECCEECCCCc---ccccCCceE--EEEEEEEEEeeeccCCcEEEEEEEChhhCC
Confidence 378999998899999999999999995321 111122222 234467888888888999999999999875
No 182
>cd05754 Ig3_Perlecan_like Third immunoglobulin (Ig)-like domain found in Perlecan and similar proteins. Ig3_Perlecan_like: domain similar to the third immunoglobulin (Ig)-like domain found in Perlecan. Perlecan is a large multi-domain heparin sulfate proteoglycan, important in tissue development and organogenesis. Perlecan can be represented as 5 major portions; its fourth major portion (domain IV) is a tandem repeat of immunoglobulin-like domains (Ig2-Ig15), which can vary in size due to alternative splicing. Perlecan binds many cellular and extracellular ligands. Its domain IV region has many binding sites. Some of these have been mapped at the level of individual Ig-like domains, including a site restricted to the Ig5 domain for heparin/sulfatide, a site restricted to the Ig3 domain for nidogen-1 and nidogen-2, a site restricted to Ig4-5 for fibronectin, and sites restricted to Ig2 and to Ig13-15 for fibulin-2.
Probab=99.29 E-value=2.6e-11 Score=75.60 Aligned_cols=77 Identities=31% Similarity=0.523 Sum_probs=59.8
Q ss_pred CCCccEEecCCcEEEEEEEee-eCCCeeEEEECCeEEeeccCCCcceeEEeeecEEEEccCCCCCCeEEEEEEEeCCcCe
Q psy15128 42 RPQDQKVGLNGIASFQCVAEG-SPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGST 120 (292)
Q Consensus 42 ~~~~~~~~~g~~~~l~C~~~~-~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~~~~ 120 (292)
.|....+.+|+.++|.|.+.+ .|.+.+.|++++..+. .. .....+.|.|.+++.+|+|.|+|.+.|..|..
T Consensus 7 ~p~~~~v~~G~~v~L~C~~~~~~~~~~i~W~~~~~~~~---~~-----~~~~~~~L~I~~v~~~DsG~Y~C~a~n~~g~~ 78 (85)
T cd05754 7 EPRSQEVRPGADVSFICRAKSKSPAYTLVWTRVGGGLP---SR-----AMDFNGILTIRNVQLSDAGTYVCTGSNMLDTD 78 (85)
T ss_pred CCCceEEcCCCCEEEEEEcCCCCCCcEEEEEECCCcCC---Cc-----ccccCCEEEECCCCHHHCEEEEEEEeccCCeE
Confidence 445667889999999999865 6788999999886532 10 12235689999999999999999999988877
Q ss_pred eEEEEE
Q psy15128 121 TVRAFL 126 (292)
Q Consensus 121 ~~~~~l 126 (292)
...+.|
T Consensus 79 ~~~~~l 84 (85)
T cd05754 79 EATATL 84 (85)
T ss_pred eEEEEE
Confidence 665543
No 183
>cd05733 Ig6_L1-CAM_like Sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins. Ig6_L1-CAM_like: domain similar to the sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains NrCAM [Ng(neuronglia)CAM-related cell adhesion molecule], which is primarily expressed in the nervous system, and human neurofascin.
Probab=99.29 E-value=2.3e-11 Score=74.08 Aligned_cols=66 Identities=24% Similarity=0.411 Sum_probs=48.7
Q ss_pred EEEEEEEeeeCCCeeEEEECCeEEeeccCCCcceeEEeeecEEEEccCCC----CCCeEEEEEEEeCCcCee
Q psy15128 54 ASFQCVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQK----EDAGFFVCSALSVAGSTT 121 (292)
Q Consensus 54 ~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~----~d~g~Y~C~~~~~~~~~~ 121 (292)
+.|.|.+.|.|.|.++|+|++..+..... .........+.|.|..+.. +|+|.|+|.|.|..|...
T Consensus 1 i~l~C~~~G~P~P~v~W~k~g~~l~~~~~--~~~~~~~~~g~L~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~ 70 (77)
T cd05733 1 IVIKCEAKGNPPPTFSWTRNGTHFDPEKD--PRVTMKPDSGTLVIDNMNGGRAEDYEGEYQCYASNELGTAI 70 (77)
T ss_pred CEEEeeCcccCCCeEEEEECCeECCCCCC--CCEEEeCCCCEEEEeccCCCCCcCCCEEEEEEEEcCCCcEE
Confidence 47999999999999999999886632211 1111223457888988754 789999999999988643
No 184
>cd05895 Ig_Pro_neuregulin-1 Immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1. Ig_Pro_neuregulin-1: immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1. There are many NRG-1 isoforms which arise from the alternative splicing of mRNA. NRG-1 belongs to the neuregulin gene family, which is comprised of four genes. This group represents NRG-1. NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, and heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. The NRG-1 protein binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates process
Probab=99.29 E-value=3.5e-11 Score=73.25 Aligned_cols=70 Identities=19% Similarity=0.328 Sum_probs=50.2
Q ss_pred EEEEEEEee-eCCCeeEEEECCeEEeeccCCCcceeEE---eeecEEEEccCCCCCCeEEEEEEEeCCcCeeEEE
Q psy15128 54 ASFQCVAEG-SPLPSVFWTQEGSQVLMFPGNAYGHLHV---TQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRA 124 (292)
Q Consensus 54 ~~l~C~~~~-~~~~~v~W~~~~~~~~~~~~~~~~~~~~---~~~~~l~i~~~~~~d~g~Y~C~~~~~~~~~~~~~ 124 (292)
+.|.|.+.+ .|.+.+.|++++..+...... ..+... ...+.|.|.++..+|+|.|+|.+.|..|.....+
T Consensus 1 ~~L~C~a~~~~p~~~~~W~~~g~~i~~~~~~-~~~~~~~~~~~~~~L~I~~~~~~DsG~Y~C~a~N~~g~~~~~~ 74 (76)
T cd05895 1 LVLRCETVSEYPSLRFKWFKNGKEIGAKNKP-DNKIKIRKKKKSSELQISKASLADNGEYKCMVSSKLGNDSVTA 74 (76)
T ss_pred CEEEEecccCCCCCceEEEECCcccccCCCC-CceEEEEeCCcEEEEEECcCCcccCEEEEEEEEeCCCceeEEE
Confidence 479999864 577899999998876422111 111111 1245799999999999999999999988766554
No 185
>cd05874 Ig6_NrCAM Sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule). Ig6_NrCAM: sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and an intracellular domain. NrCAM is primarily expressed in the nervous system.
Probab=99.28 E-value=3.3e-11 Score=73.23 Aligned_cols=66 Identities=27% Similarity=0.437 Sum_probs=48.0
Q ss_pred EEEEEEEeeeCCCeeEEEECCeEEeeccCCCcceeEEeeecEEEEccCCC----CCCeEEEEEEEeCCcCee
Q psy15128 54 ASFQCVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQK----EDAGFFVCSALSVAGSTT 121 (292)
Q Consensus 54 ~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~----~d~g~Y~C~~~~~~~~~~ 121 (292)
+.|.|.+.|.|.|.++|+|++..+..... ........++.|.|..+.. .|.|.|+|.|.|..|...
T Consensus 1 ~~l~C~a~G~P~P~i~W~k~g~~l~~~~~--~~~~~~~~~g~l~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~ 70 (77)
T cd05874 1 IVIQCEAKGKPPPSFSWTRNGTHFDIDKD--PKVTMKPNTGTLVINIMNGEKAEAYEGVYQCTARNERGAAV 70 (77)
T ss_pred CEEEeeCcccCCCeEEEEECCeECCCcCC--CCEEEeCCCceEEEeccccCCCCCCCEEEEEEEEcCCCeEE
Confidence 47999999999999999999886532211 1112223456888887764 378999999999888644
No 186
>cd04979 Ig_Semaphorin_C Immunoglobulin (Ig)-like domain of semaphorin. Ig_Semaphorin_C; Immunoglobulin (Ig)-like domain in semaphorins. Semaphorins are transmembrane protein that have important roles in a variety of tissues. Functionally, semaphorins were initially characterized for their importance in the development of the nervous system and in axonal guidance. Later they have been found to be important for the formation and functioning of the cardiovascular, endocrine, gastrointestinal, hepatic, immune, musculoskeletal, renal, reproductive, and respiratory systems. Semaphorins function through binding to their receptors and transmembrane semaphorins also serves as receptors themselves. Although molecular mechanism of semaphorins is poorly understood, the Ig-like domains may involve in ligand binding or dimerization.
Probab=99.27 E-value=7.2e-11 Score=74.27 Aligned_cols=73 Identities=22% Similarity=0.312 Sum_probs=53.4
Q ss_pred CCccEEecCCcEEEEEEEeeeCCCeeEEEECCeEEeeccCCCcceeEEeeecEEEEccCCCCCCeEEEEEEEeCCc
Q psy15128 43 PQDQKVGLNGIASFQCVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAG 118 (292)
Q Consensus 43 ~~~~~~~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~~ 118 (292)
+....+.+|+.+.|.|.+.+ |.+.+.|++++..+..... ...+.. .....|.|.+++.+|+|.|.|.+.+..+
T Consensus 3 ~~~~~v~~g~~v~L~C~~~~-p~~~i~W~k~~~~~~~~~~-~~~~~~-~~~~~L~I~~~~~~D~G~Y~C~a~~~~~ 75 (89)
T cd04979 3 EKVVTVVEGNSVFLECSPKS-NLASVVWLFQGGPLQRKEE-PEERLL-VTEDGLLIRSVSPADAGVYTCQSVEHGF 75 (89)
T ss_pred ceEEEEECCCcEEEEEeCCC-CCceEEEEECCcccccccC-cCceEE-EcCCCEEEccCCHHHCEEEEEEEecCcc
Confidence 34567888999999999876 7789999999876532211 011222 2234699999999999999999987644
No 187
>cd05845 Ig2_L1-CAM_like Second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins. Ig2_L1-CAM_like: domain similar to the second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.
Probab=99.26 E-value=3.1e-11 Score=75.28 Aligned_cols=75 Identities=16% Similarity=0.280 Sum_probs=60.1
Q ss_pred cceEEeCCCceEEEeeCCCCCCCCeEEEeEcCeEeccCCCceEEecCCCccccccccccccccccccccc-eeEEEEeec
Q psy15128 206 KDTRVASGETALLECGPPKGQPEPTLHWKKNGQFIDLESSKRVSILGDPWFDSRRSRSIFGSVLGALSDD-QWKLIAKNI 284 (292)
Q Consensus 206 ~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g-~y~C~a~n~ 284 (292)
....+.+|+.+.|.|..-.|.|.|.|.|++++.... ..+.|+.+..+| .|.|..+...|+| .|.|.|+|.
T Consensus 11 ~~v~V~eG~~~~L~C~pP~g~P~P~i~W~~~~~~~i-~~~~Ri~~~~~G--------nL~fs~v~~~D~g~~Y~C~a~~~ 81 (95)
T cd05845 11 RPVEVEEGDSVVLPCNPPKSAVPLRIYWMNSDLLHI-TQDERVSMGQNG--------NLYFANVEEQDSHPDYICHAHFP 81 (95)
T ss_pred ceeEEecCCCEEEEecCCCCCCCCEEEEECCCCccc-cccccEEECCCc--------eEEEEEEehhhCCCCeEEEEEcc
Confidence 567889999999999755899999999998765432 245666665554 5889999999999 899999999
Q ss_pred ccccc
Q psy15128 285 RNQQQ 289 (292)
Q Consensus 285 ~g~~~ 289 (292)
+....
T Consensus 82 ~~~~~ 86 (95)
T cd05845 82 GLRTI 86 (95)
T ss_pred cccce
Confidence 87653
No 188
>cd05753 Ig2_FcgammaR_like Second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins. Ig2_FcgammaR_like: domain similar to the second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.
Probab=99.26 E-value=2.6e-11 Score=74.78 Aligned_cols=68 Identities=12% Similarity=0.103 Sum_probs=53.4
Q ss_pred ceEEeCCCceEEEeeCCCCCCCCeEEEeEcCeEeccCCCceEEecCCCccccccccccccccccccccceeEEEEeeccc
Q psy15128 207 DTRVASGETALLECGPPKGQPEPTLHWKKNGQFIDLESSKRVSILGDPWFDSRRSRSIFGSVLGALSDDQWKLIAKNIRN 286 (292)
Q Consensus 207 ~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~a~n~~g 286 (292)
...+.+|+.++|.|.+..+.+...+.|+++|+.+.... ....|.|..++.+|+|.|+|.|.|..|
T Consensus 8 ~~~V~~G~~vtL~C~~~~~~~~~~~~w~k~g~~~~~~~---------------~~~~l~I~~~~~~dsG~Y~C~~~~~~~ 72 (83)
T cd05753 8 SRVVFEGEPLVLRCHGWKNKPVYKVTYYRDGKAKKYSH---------------SNSNLSIPQATLSDSGSYHCSGIIGSY 72 (83)
T ss_pred cceecCCCCEEEEeeCCCCCcceEEEEEECCeEccccC---------------CCceEEECccCHHHCEEEEEEEEeCCc
Confidence 44688999999999974456777999999998663110 112588999999999999999999998
Q ss_pred ccc
Q psy15128 287 QQQ 289 (292)
Q Consensus 287 ~~~ 289 (292)
...
T Consensus 73 ~~~ 75 (83)
T cd05753 73 DYS 75 (83)
T ss_pred eec
Confidence 543
No 189
>cd05875 Ig6_hNeurofascin_like Sixth immunoglobulin (Ig)-like domain of human neurofascin (NF). Ig6_hNeurofascin_like: the sixth immunoglobulin (Ig)-like domain of human neurofascin (NF). NF belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and a cytoplasmic domain. NF has many alternatively spliced isoforms having different temporal expression patterns during development. NF participates in axon subcellular targeting and synapse formation, however little is known of the functions of the different isoforms.
Probab=99.26 E-value=5e-11 Score=72.44 Aligned_cols=66 Identities=24% Similarity=0.398 Sum_probs=47.7
Q ss_pred EEEEEEEeeeCCCeeEEEECCeEEeeccCCCcceeEEeeecEEEEccCC----CCCCeEEEEEEEeCCcCee
Q psy15128 54 ASFQCVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQ----KEDAGFFVCSALSVAGSTT 121 (292)
Q Consensus 54 ~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~----~~d~g~Y~C~~~~~~~~~~ 121 (292)
+.|.|.+.|.|.|.++|+|++..+....... ......++.|.|..+. .+|+|.|+|.|.|..|...
T Consensus 1 ~~l~C~~~G~P~P~v~W~k~g~~~~~~~~~~--~~~~~~~~~L~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~ 70 (77)
T cd05875 1 IIIECEAKGNPVPTFQWTRNGKFFNVAKDPR--VSMRRRSGTLVIDFSGGGRPEDYEGEYQCFARNNLGTAL 70 (77)
T ss_pred CEEEEeccccCCCEEEEEECCEEccCcCCCc--EEEeCCCceEEEeccCCCCCCCCCEEEEEEEEeccceEE
Confidence 4799999999999999999998653222211 1122345688888764 2469999999999988654
No 190
>cd05757 Ig2_IL1R_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins. Ig2_IL1R_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three IG-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta. This group also contains ILIR-like 1 (IL1
Probab=99.25 E-value=8.3e-11 Score=73.76 Aligned_cols=77 Identities=19% Similarity=0.219 Sum_probs=57.9
Q ss_pred cEEecCCcEEEEEEEeee-----CCCeeEEEECCeEEeeccCCCcceeEEeeecEEEEccCCCCCCeEEEEEEEeCCcCe
Q psy15128 46 QKVGLNGIASFQCVAEGS-----PLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGST 120 (292)
Q Consensus 46 ~~~~~g~~~~l~C~~~~~-----~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~~~~ 120 (292)
..+.+|+++.|.|...+. |.+.+.|+|++..+... . ......+.|.|.++..+|+|.|+|.+.+..+..
T Consensus 5 ~~~~~g~~~~l~Cp~~~~~~~~~~~p~i~Wyk~~~~i~~~-----~-~~~~~~~~L~I~~v~~~DsG~YtC~~~n~~~~~ 78 (92)
T cd05757 5 QILFSTKGGKIVCPDLDDFKNENTLPPVQWYKDCKLLEGD-----R-KRFVKGSKLLIQNVTEEDAGNYTCKLTFTHNGK 78 (92)
T ss_pred EEEeeccCCEEECCChHHccCCCCCCcEEEeECCEECCCC-----c-cEEecCCEEEEeeCChhhCEEEEEEEEecCCCE
Confidence 457789999999987542 56799999999876311 1 112256799999999999999999999987776
Q ss_pred eEEEEEEE
Q psy15128 121 TVRAFLQV 128 (292)
Q Consensus 121 ~~~~~l~v 128 (292)
...+...+
T Consensus 79 ~~~~t~t~ 86 (92)
T cd05757 79 QYNVTRTI 86 (92)
T ss_pred EEEEEEEE
Confidence 65555444
No 191
>cd05729 Ig2_FGFR_like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor and similar proteins. Ig2_FGFR_like: domain similar to the second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three Ig-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin
Probab=99.24 E-value=1.1e-10 Score=72.91 Aligned_cols=81 Identities=21% Similarity=0.327 Sum_probs=57.9
Q ss_pred cEEecCCcEEEEEEEeeeCCCeeEEEECCeEEeeccCCCcceeEEeeecEEEEccCCCCCCeEEEEEEEeCCcCeeEEEE
Q psy15128 46 QKVGLNGIASFQCVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRAF 125 (292)
Q Consensus 46 ~~~~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~~~~~~~~~ 125 (292)
..+..|+.+.|.|.+.+.|.+.+.|++++..+..... ............|.|.++..+|.|.|.|.+.|..|....+..
T Consensus 4 ~~~~~G~~~~l~C~~~~~p~~~v~W~k~~~~~~~~~~-~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~n~~g~~~~~~~ 82 (85)
T cd05729 4 HAVPAGSTVRLKCPASGNPRPTITWLKDGKPFKKEHR-IGGYKVRKKKWTLILESVVPSDSGKYTCIVENKYGSINHTYK 82 (85)
T ss_pred eEecCCCcEEEEEEcCCCCCCeEEEEECCEECcccCc-eeEEEccCcEEEEEEeECCcccCEEEEEEEEECCceEEEEEE
Confidence 3456799999999999999999999999876531110 000001122347999999999999999999998877655555
Q ss_pred EE
Q psy15128 126 LQ 127 (292)
Q Consensus 126 l~ 127 (292)
|.
T Consensus 83 l~ 84 (85)
T cd05729 83 VD 84 (85)
T ss_pred Ee
Confidence 43
No 192
>PHA03376 BARF1; Provisional
Probab=99.24 E-value=9.4e-10 Score=75.43 Aligned_cols=125 Identities=18% Similarity=0.268 Sum_probs=76.1
Q ss_pred ccEEecCCcEEEEEEEee---eCCCeeEEEECC----eEEee--------ccCCCcceeEE---eeecEEEEccCCCCCC
Q psy15128 45 DQKVGLNGIASFQCVAEG---SPLPSVFWTQEG----SQVLM--------FPGNAYGHLHV---TQEGTLRIQGVQKEDA 106 (292)
Q Consensus 45 ~~~~~~g~~~~l~C~~~~---~~~~~v~W~~~~----~~~~~--------~~~~~~~~~~~---~~~~~l~i~~~~~~d~ 106 (292)
.+....|+.+.|.|...- .+.-.|.|+|.+ .-+.. .+-...++..+ .++-.|.|.+++.+|.
T Consensus 20 pVta~VGEda~LsC~lnp~ssa~~MrIrWqKs~p~~~~VvL~~~ggdVv~~QmEyRGrtD~~~~~gnvsLvI~~l~lSDd 99 (221)
T PHA03376 20 AVTAFLGERVTLTSYWRRVSLGPEIEVSWFKLGPGEEQVLIGRMHHDVIFIEWPFRGFFDIHRSANTFFLVVTAANISHD 99 (221)
T ss_pred chhheeCCcEEEEecccCccCCCceEEEEEecCCCCCCEEEEEcCCeeeeeeeccccEEEEEecCCeEEEEEEeeeecCC
Confidence 456778999999997752 134479999942 11111 11122233333 3345899999999999
Q ss_pred eEEEEEEEeCCcCeeEEEEEEEEeecCCCCCeEEeCCCCceecCCCeEEEEeEeccCCCCceEEEeCC
Q psy15128 107 GFFVCSALSVAGSTTVRAFLQVTSVEDTPPPIVQVGPSNQTLPLHSVAFLPCQAVGSPPPHIRWYKNG 174 (292)
Q Consensus 107 g~Y~C~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~p~~~~~W~~~~ 174 (292)
|.|+|.+............+++.. +...++.........-+..++.|.+.++|.|.+.|..+.
T Consensus 100 GtY~C~fQkge~~~~k~ehLt~V~-----~~~Lsv~a~~~dFp~~~~~~i~C~sggfP~P~~~Wle~~ 162 (221)
T PHA03376 100 GNYLCRMKLGETEVTKQEHLSVVK-----PLTLSVHSERSQFPDFSVLTVTCTVNAFPHPHVQWLMPE 162 (221)
T ss_pred ceEEEEEEcCCCceeeeeeeeeee-----cceEEEEeccccCCCCCeeEEEEecCCcCCchheecccc
Confidence 999999986444333333333321 222222222222222456789999889999999999753
No 193
>cd07690 Ig1_CD4 First immunoglobulin (Ig) domain of CD4. Ig1_CD4; first immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy.
Probab=99.24 E-value=5.5e-11 Score=74.54 Aligned_cols=81 Identities=19% Similarity=0.199 Sum_probs=54.5
Q ss_pred eEEeCCCceEEEeeCCCCCCCCeEEEeEcCeEeccCCCceEEec----CCCcccc------cccccccccccccccccee
Q psy15128 208 TRVASGETALLECGPPKGQPEPTLHWKKNGQFIDLESSKRVSIL----GDPWFDS------RRSRSIFGSVLGALSDDQW 277 (292)
Q Consensus 208 ~~~~~g~~~~l~C~~~~~~p~~~~~W~~~g~~~~~~~~~~~~~~----~~~~~~~------~~~~~l~i~~~~~~~~g~y 277 (292)
+.+.+|+.|+|.|.+ .+.+.+.+.|+++++........++... ..+.+.. .....|.|..+..+|+|+|
T Consensus 2 v~~~~G~~VtL~C~~-s~~~~~~i~W~~~~~k~~~g~~~~l~~~~~~~~~~r~~~~~~~~~~g~~~L~I~~l~~sDsgtY 80 (94)
T cd07690 2 VLGKKGDTAELPCTA-SQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRNLWDQGSFPLIIKNLKIEDSDTY 80 (94)
T ss_pred eEeeCCCCEEEEEEe-CCCCCcEEEEEECCcEEccCcCCEEEEecccccCCCCceecccCCCCeEEEEECCCCHHHCEEE
Confidence 457899999999998 6788899999987643211111222110 0111111 1123599999999999999
Q ss_pred EEEEeecccccc
Q psy15128 278 KLIAKNIRNQQQ 289 (292)
Q Consensus 278 ~C~a~n~~g~~~ 289 (292)
+|.|.|..++..
T Consensus 81 ~C~v~~~~~~~~ 92 (94)
T cd07690 81 ICEVEDKKEEVE 92 (94)
T ss_pred EEEECCccceEE
Confidence 999999988753
No 194
>smart00408 IGc2 Immunoglobulin C-2 Type.
Probab=99.23 E-value=4.7e-11 Score=69.89 Aligned_cols=63 Identities=22% Similarity=0.488 Sum_probs=49.2
Q ss_pred CCCceEEEeeCCCCCCCCeEEEeEcCeEeccCCCceEEecCCCccccccccccccccccccccceeEEEEeeccc
Q psy15128 212 SGETALLECGPPKGQPEPTLHWKKNGQFIDLESSKRVSILGDPWFDSRRSRSIFGSVLGALSDDQWKLIAKNIRN 286 (292)
Q Consensus 212 ~g~~~~l~C~~~~~~p~~~~~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~a~n~~g 286 (292)
+|+.+.|.|.+ .+.|.+.+.|++++..+. ...... .....|.|..+...|+|.|+|.|.|..|
T Consensus 1 ~g~~~~l~C~~-~~~~~~~v~W~~~~~~~~--~~~~~~---------~~~~~L~i~~~~~~d~G~Y~C~~~n~~g 63 (63)
T smart00408 1 EGQSVTLTCPA-EGDPVPNITWLKDGKPLP--ESNRLS---------ASGSTLTIKSVSLEDSGEYTCVAENSAG 63 (63)
T ss_pred CCceEEEEeeC-ccCCCCeEEEEECCEECC--CCCEEe---------cCCcEEEEeeCCcccCEEEEEEEecCCC
Confidence 48899999997 788889999999998774 111111 1223688889999999999999999876
No 195
>cd05882 Ig1_Necl-1 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). Ig1_Necl-1: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-1, Necl-1 (also known as celll adhesion molecule 3 (CADM3), SynCAM2, IGSF4). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the format
Probab=99.23 E-value=3.1e-11 Score=76.16 Aligned_cols=74 Identities=20% Similarity=0.295 Sum_probs=53.5
Q ss_pred cceEEeCCCceEEEeeCCCCCCCCeEEEeEcCeEeccC------CCceEEecCCCccccccccccccccccccccceeEE
Q psy15128 206 KDTRVASGETALLECGPPKGQPEPTLHWKKNGQFIDLE------SSKRVSILGDPWFDSRRSRSIFGSVLGALSDDQWKL 279 (292)
Q Consensus 206 ~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~g~~~~~~------~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C 279 (292)
.+..+.+|+++.|.|.+ .+.|.+.+.|++++..+... ...++.+.... .....|.|..+..+|+|.|+|
T Consensus 5 ~~~tv~~G~tv~L~C~v-~g~~~~~v~W~k~~~~~~~~~~~~~~~~~r~~~~~~~----~~~~~L~I~nV~~~D~G~YtC 79 (95)
T cd05882 5 QDETVAVGGTVTLKCGV-KEHDNSSLQWSNTAQQTLYFGEKRALRDNRIQLVKST----PTELIISISNVQLSDEGEYTC 79 (95)
T ss_pred ccEEEecCCcEEEEEEE-eCCCCCeEEEeccCccEEEeCCeEEEeCCeEEEEeCC----CceEEEEECCCCcccCEEEEE
Confidence 46789999999999998 88999999999987643111 11222221111 112469999999999999999
Q ss_pred EEeec
Q psy15128 280 IAKNI 284 (292)
Q Consensus 280 ~a~n~ 284 (292)
.|...
T Consensus 80 ~~~t~ 84 (95)
T cd05882 80 SIFTM 84 (95)
T ss_pred EEEee
Confidence 99873
No 196
>cd05861 Ig1_PDGFR-alphabeta Frst immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b). Ig1_PDGFR-alphabeta: The first immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b). PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFRalpha binds to all three PDGFs, whereas the PDGFRbeta binds only to PDGF-B. PDGFRs alpha and beta have similar organization: an extracellular component with five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFRalpha and PDGFRbeta are essential for normal development.
Probab=99.23 E-value=3.2e-11 Score=74.67 Aligned_cols=68 Identities=15% Similarity=0.206 Sum_probs=48.7
Q ss_pred CCceEEEeeCCCCCCCCeEEEeEcCeEeccCCCc--eEEecCCCccccccccccccccccccccceeEEEEeeccc
Q psy15128 213 GETALLECGPPKGQPEPTLHWKKNGQFIDLESSK--RVSILGDPWFDSRRSRSIFGSVLGALSDDQWKLIAKNIRN 286 (292)
Q Consensus 213 g~~~~l~C~~~~~~p~~~~~W~~~g~~~~~~~~~--~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~a~n~~g 286 (292)
|++++|.|.+ .+.|.+.+.|+++++........ +..+.. ......|.|..++.+|+|.|.|.|+|..+
T Consensus 1 Ge~~~l~C~~-~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~-----~~~~s~L~I~~~~~~DsG~Y~C~a~n~~~ 70 (84)
T cd05861 1 GETITVNCIV-QGNEVVDFSWTYPGKDIGKGIPEVEEVKVPA-----TTLRSTLTFPHATVEDSGTYECAAHESTQ 70 (84)
T ss_pred CCcEEEEEEE-ECCCccEEEEEECCccCCCCceEEEEEecCC-----cEEEEEEEECCCCcCCCEEEEEEEEECcc
Confidence 7899999998 78899999999877643110000 111111 11234799999999999999999999876
No 197
>cd05753 Ig2_FcgammaR_like Second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins. Ig2_FcgammaR_like: domain similar to the second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.
Probab=99.23 E-value=6.7e-11 Score=72.96 Aligned_cols=65 Identities=17% Similarity=0.222 Sum_probs=51.5
Q ss_pred ccEEecCCcEEEEEEEee-eCCCeeEEEECCeEEeeccCCCcceeEEeeecEEEEccCCCCCCeEEEEEEEeCCcC
Q psy15128 45 DQKVGLNGIASFQCVAEG-SPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGS 119 (292)
Q Consensus 45 ~~~~~~g~~~~l~C~~~~-~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~~~ 119 (292)
...+.+|+.++|.|.+.+ .+...+.|+|++..+.. ......|.|.+++.+|+|.|+|.+.+..+.
T Consensus 8 ~~~V~~G~~vtL~C~~~~~~~~~~~~w~k~g~~~~~----------~~~~~~l~I~~~~~~dsG~Y~C~~~~~~~~ 73 (83)
T cd05753 8 SRVVFEGEPLVLRCHGWKNKPVYKVTYYRDGKAKKY----------SHSNSNLSIPQATLSDSGSYHCSGIIGSYD 73 (83)
T ss_pred cceecCCCCEEEEeeCCCCCcceEEEEEECCeEccc----------cCCCceEEECccCHHHCEEEEEEEEeCCce
Confidence 446889999999999854 45668999999876521 112458999999999999999999987763
No 198
>cd05871 Ig_Semaphorin_classIII Immunoglobulin (Ig)-like domain of class III semaphorin. Ig_Semaphorin_class III; Immunoglobulin (Ig)-like domain of class III semaphorins. Semaphorins are classified into various classes on the basis of structural features additional to the Sema domain. Class III semaphorins are a vertebrate class having a Sema domain, an Ig domain, a short basic domain, and are secreted. They have been shown to be axonal guidance cues and have a part in the regulation of the cardiovascular, immune and respiratory systems. Sema3A, the prototype member of this class III subfamily, induces growth cone collapse and is an inhibitor of axonal sprouting. In perinatal rat cortex as a chemoattractant, it functions to direct, for pyramidal neurons, the orientated extension of apical dendrites. It may play a role, prior to the development of apical dendrites, in signaling the radial migration of newborn cortical neurons towards the upper layers. Sema3A selectively inhibits vascula
Probab=99.18 E-value=3.2e-10 Score=71.14 Aligned_cols=81 Identities=23% Similarity=0.294 Sum_probs=52.8
Q ss_pred cEEecCCcEEEEEEEeeeCCCeeEEEECCeEEeeccC-CCcceeEEeeecEEEEccCCCCCCeEEEEEEEe-CCcCeeEE
Q psy15128 46 QKVGLNGIASFQCVAEGSPLPSVFWTQEGSQVLMFPG-NAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALS-VAGSTTVR 123 (292)
Q Consensus 46 ~~~~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~-~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~-~~~~~~~~ 123 (292)
+...+|+.++|.|.. +.|.+.+.|++.......... ....+.. ...+.|.|.+++.+|+|.|+|.+.+ ..+.....
T Consensus 6 ~~~~eG~~v~L~C~~-~~p~p~v~Wykq~~g~~~~~~~~~~~r~~-~~~~~L~I~~~~~~DsG~Y~C~a~~~~~~~~~~~ 83 (91)
T cd05871 6 VYGVENNSTFLECLP-KSPQASVKWLFQRGGDQRKEEVKTEERLI-HTERGLLLRSLQRSDAGVYTCTAVEHSFSQTLAK 83 (91)
T ss_pred EEEecCCcEEEEEEC-CCCCceEEEEEECCCCCccccccccccEE-EecCeEEEeeCChhHCEEEEEEEEccCCeEEEEE
Confidence 457789999999996 478889999984322110000 0112222 2346799999999999999999984 44434444
Q ss_pred EEEEE
Q psy15128 124 AFLQV 128 (292)
Q Consensus 124 ~~l~v 128 (292)
+.|.|
T Consensus 84 ~~l~v 88 (91)
T cd05871 84 YTLHV 88 (91)
T ss_pred EEEEE
Confidence 44444
No 199
>cd05885 Ig2_Necl-4 Second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4)). Ig2_Necl-4: second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1-Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Ig domains are likely to participate in ligand binding and recognition. Necl-4 is expressed on Schwann cells, and plays a key part in initiating peripheral nervous system (PNS) myelination. In injured peripheral nerve cells, the mRNA signal for both Necl-4 and Necl-5 was observed to be elevated. Necl-4 participates in cell-cell adhesion and is proposed to play a role in tumor suppression.
Probab=99.16 E-value=4.3e-10 Score=67.71 Aligned_cols=67 Identities=16% Similarity=0.301 Sum_probs=50.0
Q ss_pred EEEEEEEee-eCCCeeEEEECCeEEeeccCCCcceeEEeeecEEEEccCCCCCCeEEEEEEEeCCcCe
Q psy15128 54 ASFQCVAEG-SPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGST 120 (292)
Q Consensus 54 ~~l~C~~~~-~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~~~~ 120 (292)
+.|+|...+ .|++.|.||+++..+............+...+.|.+.....+|.+.|+|+|.|..+..
T Consensus 2 ~~L~C~s~~skP~a~i~W~k~~~~l~~~~~~~~~~~~~t~~s~L~~~~~~~Ddg~~~~C~A~n~a~~~ 69 (80)
T cd05885 2 VELTCLSPRSKPAATLRWYRDRKELKGVISQQENGKTVSVSNTIRFPVDRKDDGAILSCEASHPALVS 69 (80)
T ss_pred EEEEEeCCCccCCCeEEEEECCEECCCCcccccCCceEEEEEEEEEEeeeccCCcEEEEEEEChhhCC
Confidence 689998765 6899999999999874322111122233445689999999999999999999987654
No 200
>cd05717 Ig1_Necl-1-3_like First (N-terminal) immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-3 (also known as cell adhesion molecules CADM3, CADM1, and CADM2 respectively). Ig1_Necl-1-3_like: N-terminal immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), and Necl-3 (CADM2). At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1, Necl-2, and Necl-3 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the form
Probab=99.16 E-value=8e-10 Score=70.41 Aligned_cols=83 Identities=24% Similarity=0.407 Sum_probs=55.4
Q ss_pred CCccEEecCCcEEEEEEEeeeCCCeeEEEECCeEEeeccC---CCcceeEE----eeecEEEEccCCCCCCeEEEEEEEe
Q psy15128 43 PQDQKVGLNGIASFQCVAEGSPLPSVFWTQEGSQVLMFPG---NAYGHLHV----TQEGTLRIQGVQKEDAGFFVCSALS 115 (292)
Q Consensus 43 ~~~~~~~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~---~~~~~~~~----~~~~~l~i~~~~~~d~g~Y~C~~~~ 115 (292)
+....+.+|++++|.|.+.+.+.+.+.|++.+........ ....++.. .....|+|.+++.+|+|.|+|.+..
T Consensus 4 ~~~~~v~~G~~v~L~C~~~~~~~~~v~W~~p~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~ 83 (95)
T cd05717 4 TQDVTVVEGGTATLKCRVKNNDNSSLQWSNPNQQTLYFNDKRALRDNRIQLVNFSANELSISISNVSLSDEGRYTCSLYT 83 (95)
T ss_pred CCcEEEcCCCCEEEEEEECCCCCceEEEeCCCCcEEEeccccccccCcEEEEcCCCCeeEEEEccCCcccCEEEEEEEec
Confidence 3456788999999999998877889999874433221111 01122222 1234799999999999999999986
Q ss_pred CCcCeeEEEEE
Q psy15128 116 VAGSTTVRAFL 126 (292)
Q Consensus 116 ~~~~~~~~~~l 126 (292)
... ....+.|
T Consensus 84 ~~~-~~~~~~~ 93 (95)
T cd05717 84 MPV-QTAKATV 93 (95)
T ss_pred CCC-ceEEEEE
Confidence 542 3444444
No 201
>smart00408 IGc2 Immunoglobulin C-2 Type.
Probab=99.14 E-value=3.5e-10 Score=66.09 Aligned_cols=62 Identities=29% Similarity=0.542 Sum_probs=49.2
Q ss_pred cCCcEEEEEEEeeeCCCeeEEEECCeEEeeccCCCcceeEEeeecEEEEccCCCCCCeEEEEEEEeCC
Q psy15128 50 LNGIASFQCVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVA 117 (292)
Q Consensus 50 ~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~ 117 (292)
+|+.++|.|.+.+.+.+.+.|++++..+. ...........|.|.++...|+|.|+|.+.+..
T Consensus 1 ~g~~~~l~C~~~~~~~~~v~W~~~~~~~~------~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~n~~ 62 (63)
T smart00408 1 EGQSVTLTCPAEGDPVPNITWLKDGKPLP------ESNRLSASGSTLTIKSVSLEDSGEYTCVAENSA 62 (63)
T ss_pred CCceEEEEeeCccCCCCeEEEEECCEECC------CCCEEecCCcEEEEeeCCcccCEEEEEEEecCC
Confidence 47889999998888888999999887653 111223345689999999999999999998754
No 202
>cd05727 Ig2_Contactin-2-like Second Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins. Ig2_Contactin-2-like: second Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.
Probab=99.13 E-value=2.3e-10 Score=71.55 Aligned_cols=74 Identities=19% Similarity=0.181 Sum_probs=55.6
Q ss_pred CccEEecCCcEEEEEEE-eeeCCCeeEEEECCeEEeeccCCCcceeEEeeecEEEEccCCCCCCeEEEEEEEeCCcC
Q psy15128 44 QDQKVGLNGIASFQCVA-EGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGS 119 (292)
Q Consensus 44 ~~~~~~~g~~~~l~C~~-~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~~~ 119 (292)
....+.+|+.+.|.|.. .+.|.+.|.|++++....... ...+.....++.|.|.+++.+|+|.|+|.|.|....
T Consensus 11 ~~~~v~eG~~~~L~C~pP~g~P~p~~~W~k~~~~~~~~~--d~r~~~~~~~G~L~fs~v~~~D~g~Y~C~A~n~~~~ 85 (96)
T cd05727 11 DEVKVKEGWGVVLFCDPPPHYPDLSYRWLLNEFPNFIPE--DGRRFVSQTNGNLYIAKVEASDRGNYSCFVSSPSST 85 (96)
T ss_pred CceeeeeCCcEEEeeCCCCCCCCCEEEEEECCccccccc--CCCeEEeCCCCcEEEeecCHhhCceeEEEEEecccC
Confidence 34568889999999965 567899999999976532221 112233334789999999999999999999987544
No 203
>cd05896 Ig1_IL1RAPL-1_like First immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1). Ig1_ IL1RAPL-1_like: domain similar to the first immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1). IL-1 alpha and IL-1 beta are cytokines which participates in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of
Probab=99.12 E-value=5.8e-10 Score=69.94 Aligned_cols=83 Identities=13% Similarity=0.126 Sum_probs=56.6
Q ss_pred ccEEecCCcEEEEEEEee-----------eCCCeeEEEECCeEEeeccCCCcc-eeEEeeecEEEEccCCCCCCeEEEEE
Q psy15128 45 DQKVGLNGIASFQCVAEG-----------SPLPSVFWTQEGSQVLMFPGNAYG-HLHVTQEGTLRIQGVQKEDAGFFVCS 112 (292)
Q Consensus 45 ~~~~~~g~~~~l~C~~~~-----------~~~~~v~W~~~~~~~~~~~~~~~~-~~~~~~~~~l~i~~~~~~d~g~Y~C~ 112 (292)
...+.+|+.+.|.|.... .....+.|+|++............ .........|.|.++..+|+|.|+|.
T Consensus 9 ~~~~~~GE~v~l~C~~~~~~~~~~~~~~~~~~~~v~WyK~~~~~~~~~~~~~~~~Ri~~~~~~Lwf~Pa~~eDSG~Y~C~ 88 (104)
T cd05896 9 KYMVLAGEPVRIKCALFYGYIRTNYSMAQSAGLSLMWYKSSGDGEEPIEIIFDGVRMSKEEDSIWFRPAELQDSGLYTCV 88 (104)
T ss_pred eEEEcCCCeEEEECCCccccccccccccccCCceEEEEECCCCCCCCCcccccceeEEEeCCEEEEEeCChhhCeEEEEE
Confidence 456889999999998621 123379999997544322111111 12233466899999999999999999
Q ss_pred EEeCCcCeeEEEEEE
Q psy15128 113 ALSVAGSTTVRAFLQ 127 (292)
Q Consensus 113 ~~~~~~~~~~~~~l~ 127 (292)
++|........+.|+
T Consensus 89 ~rN~t~C~~~~i~l~ 103 (104)
T cd05896 89 LRNSTYCMKVSMSLT 103 (104)
T ss_pred ECCCCcceEEEEEEE
Confidence 998876666655554
No 204
>cd05862 Ig1_VEGFR First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R). IG1_VEGFR: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF_A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angioge
Probab=99.12 E-value=9.2e-10 Score=68.39 Aligned_cols=79 Identities=19% Similarity=0.188 Sum_probs=54.1
Q ss_pred CCcEEEEEEEeeeC--CCeeEEEECCeEEeeccCCC----cceeEEeeecEEEEccCCCCCCeEEEEEEEeCCcCeeEEE
Q psy15128 51 NGIASFQCVAEGSP--LPSVFWTQEGSQVLMFPGNA----YGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRA 124 (292)
Q Consensus 51 g~~~~l~C~~~~~~--~~~v~W~~~~~~~~~~~~~~----~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~~~~~~~~ 124 (292)
|+++.|.|.+.+.+ ...+.|.+.+.......... .........+.|.|.+++..|+|.|+|.+.|..+......
T Consensus 1 Ge~~~L~C~~~~~~~~~~~~~W~~p~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~~~~~DsG~Y~C~a~n~~~~~~~~t 80 (86)
T cd05862 1 GEKLVLNCTARTELNVGIDFQWDYPGKKEQRAKSVSENRRSLQEHTELSSTLTIENVTLSDLGRYTCTASSGQMIAKNST 80 (86)
T ss_pred CCcEEEEEEEEeCCCCcEEEEEEcCCcccccceecccccccccccceeeeEEEEecCCcccCEEEEEEEeecceEecccE
Confidence 78899999998754 44789988775432111001 0111122356899999999999999999999877666666
Q ss_pred EEEEE
Q psy15128 125 FLQVT 129 (292)
Q Consensus 125 ~l~v~ 129 (292)
.|.|.
T Consensus 81 ~~~V~ 85 (86)
T cd05862 81 IVIVH 85 (86)
T ss_pred EEEEe
Confidence 66553
No 205
>PF13895 Ig_2: Immunoglobulin domain; PDB: 2V5R_B 2V5M_A 2V5S_B 2GI7_A 3LAF_A 4DEP_C 3O4O_B 2EC8_A 2E9W_A 1J87_A ....
Probab=99.12 E-value=1.1e-09 Score=67.40 Aligned_cols=61 Identities=31% Similarity=0.565 Sum_probs=49.7
Q ss_pred cEEecCCcEEEEEEEeeeCCCeeEEEECCeEEeeccCCCcceeEEeeecEEEEccCCCCCCeEEEEEEEeCCc
Q psy15128 46 QKVGLNGIASFQCVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAG 118 (292)
Q Consensus 46 ~~~~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~~ 118 (292)
..+.+|+.+.|.|.+.+.|...+.|++++..+.. ....+.+..+..+|.|.|+|.+.+..+
T Consensus 9 ~~v~~g~~~~l~C~~~~~p~~~~~w~~~~~~~~~------------~~~~~~~~~~~~~~~g~y~C~~~~~~~ 69 (80)
T PF13895_consen 9 QSVEEGDSVTLTCSVSGNPPPQVQWYKNGSPINS------------SQNGLFIPNVSPEDSGNYTCRASNGSG 69 (80)
T ss_dssp SEEETTSEEEEEEEEESSSSSEEEEEETTEEEEE------------ESSEEEESSEEGGGTEEEEEEEEETTE
T ss_pred eEEeCCCcEEEEEEEEcccceeeeeeeeeeeeee------------eeeeeeeeeeccccCEEEEEEEEeCCC
Confidence 5688999999999999888889999998876631 111277788999999999999998544
No 206
>cd05897 Ig2_IL1R2_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2). Ig2_IL1R2_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds the type II (IL1R2) represented in this group. Mature IL1R2 consists of three IG-like domains, a transmembrane domain, and a short cytoplasmic domain. It lacks the large cytoplasmic domain of Mature IL1R1, and does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta.
Probab=99.11 E-value=1.8e-10 Score=72.06 Aligned_cols=75 Identities=11% Similarity=0.168 Sum_probs=54.0
Q ss_pred ceEEeCCCceEEEeeCCCC----CCCCeEEEeEcCeEeccCCCceEEecCCCccccccccccccccccccccceeEEEEe
Q psy15128 207 DTRVASGETALLECGPPKG----QPEPTLHWKKNGQFIDLESSKRVSILGDPWFDSRRSRSIFGSVLGALSDDQWKLIAK 282 (292)
Q Consensus 207 ~~~~~~g~~~~l~C~~~~~----~p~~~~~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~a~ 282 (292)
...+..|.+..|.|.-..+ .+.+.+.|+|+++++... ..+.....+ ...|.|..+..+|+|.|+|.|+
T Consensus 4 ~~~~~~~~~~~l~Cp~~~~f~~~~~~~~v~WYKd~~~l~~~-~~~~~~~~~-------~~~L~I~~v~~~D~G~YtC~~~ 75 (95)
T cd05897 4 PQILFTSTSGKLVCPDLSDFTINRTDVELQWYKDSVLLDKD-NEKFYSLKG-------STYLHIIDVSLNDSGYYTCKLQ 75 (95)
T ss_pred eeEeccccCcEEECCCHHHcccCCCCCcEEEccCCEECcCC-CcceEecCC-------CCEEEEEEcChhhCEEEEEEEE
Confidence 3456789999999972223 366799999999988532 222222111 1248899999999999999999
Q ss_pred ecccccc
Q psy15128 283 NIRNQQQ 289 (292)
Q Consensus 283 n~~g~~~ 289 (292)
|.+|...
T Consensus 76 ~~~~g~~ 82 (95)
T cd05897 76 FTHEGKK 82 (95)
T ss_pred EeeCCEE
Confidence 9987654
No 207
>cd05845 Ig2_L1-CAM_like Second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins. Ig2_L1-CAM_like: domain similar to the second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.
Probab=99.08 E-value=4.6e-10 Score=70.01 Aligned_cols=72 Identities=14% Similarity=0.260 Sum_probs=58.4
Q ss_pred CCccEEecCCcEEEEEE-EeeeCCCeeEEEECCeEEeeccCCCcceeEEeeecEEEEccCCCCCCe-EEEEEEEeCCc
Q psy15128 43 PQDQKVGLNGIASFQCV-AEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAG-FFVCSALSVAG 118 (292)
Q Consensus 43 ~~~~~~~~g~~~~l~C~-~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g-~Y~C~~~~~~~ 118 (292)
...+.+.+|+.+.|.|. ..+.|.+.|.|++++.... ....+.....++.|.|.+++..|.| .|.|.|.+...
T Consensus 10 ~~~v~V~eG~~~~L~C~pP~g~P~P~i~W~~~~~~~i----~~~~Ri~~~~~GnL~fs~v~~~D~g~~Y~C~a~~~~~ 83 (95)
T cd05845 10 IRPVEVEEGDSVVLPCNPPKSAVPLRIYWMNSDLLHI----TQDERVSMGQNGNLYFANVEEQDSHPDYICHAHFPGL 83 (95)
T ss_pred cceeEEecCCCEEEEecCCCCCCCCEEEEECCCCccc----cccccEEECCCceEEEEEEehhhCCCCeEEEEEcccc
Confidence 35678899999999996 6889999999997765432 1245666777899999999999999 79999998653
No 208
>cd07701 Ig1_Necl-3 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Ig1_Necl-3: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-3, Necl-3 (also known as cell adhesion molecule 2 (CADM2), SynCAM2, IGSF4D). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-3 accumulates in central and peripheral nervous system tissue, and has been shown to selectively interact with oligodendrocytes.
Probab=99.08 E-value=3.8e-10 Score=71.52 Aligned_cols=77 Identities=19% Similarity=0.276 Sum_probs=53.8
Q ss_pred cceEEeCCCceEEEeeCCCCCCCCeEEEeEcCeEe-ccC-----CCceEEecCCCccccccccccccccccccccceeEE
Q psy15128 206 KDTRVASGETALLECGPPKGQPEPTLHWKKNGQFI-DLE-----SSKRVSILGDPWFDSRRSRSIFGSVLGALSDDQWKL 279 (292)
Q Consensus 206 ~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~g~~~-~~~-----~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C 279 (292)
.+..+.+|+++.|.|.+ .+.|.+.+.|++.+..+ ... ...++..... ......|.|..+..+|+|.|+|
T Consensus 5 ~~v~v~eG~~v~L~C~~-~~~p~~~v~W~~~~~~~l~~~~~~~~~~~r~~~~~~----~~~~~sL~I~~v~~~DsG~Y~C 79 (95)
T cd07701 5 QNVTVVEGGTANLTCRV-DQNDNTSLQWSNPAQQTLYFDDKKALRDNRIELVRA----SWHELSISISDVSLSDEGQYTC 79 (95)
T ss_pred ceEEEecCCcEEEEEEE-ecCCceEEEEeCCCCeEEEEcCcccccCCCEEEEEC----CCCcEEEEECcCCcccCEEEEE
Confidence 56789999999999998 88899999998643221 100 1223322111 0123468999999999999999
Q ss_pred EEeecccc
Q psy15128 280 IAKNIRNQ 287 (292)
Q Consensus 280 ~a~n~~g~ 287 (292)
.+.+..+.
T Consensus 80 ~~~t~~~~ 87 (95)
T cd07701 80 SLFTMPVK 87 (95)
T ss_pred EeEeecCc
Confidence 99986554
No 209
>cd05862 Ig1_VEGFR First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R). IG1_VEGFR: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF_A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angioge
Probab=99.07 E-value=2.7e-10 Score=70.75 Aligned_cols=75 Identities=16% Similarity=0.192 Sum_probs=50.8
Q ss_pred CCceEEEeeCCCCC--CCCeEEEeEcCeEeccC---CCceEEecCCCccccccccccccccccccccceeEEEEeecccc
Q psy15128 213 GETALLECGPPKGQ--PEPTLHWKKNGQFIDLE---SSKRVSILGDPWFDSRRSRSIFGSVLGALSDDQWKLIAKNIRNQ 287 (292)
Q Consensus 213 g~~~~l~C~~~~~~--p~~~~~W~~~g~~~~~~---~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~a~n~~g~ 287 (292)
|+++.|.|.+ .+. +...+.|.++++.+... ...+.... ........|.|..+...|+|.|+|.|+|..|.
T Consensus 1 Ge~~~L~C~~-~~~~~~~~~~~W~~p~~~~~~~~~~~~~~~~~~----~~~~~~s~L~I~~~~~~DsG~Y~C~a~n~~~~ 75 (86)
T cd05862 1 GEKLVLNCTA-RTELNVGIDFQWDYPGKKEQRAKSVSENRRSLQ----EHTELSSTLTIENVTLSDLGRYTCTASSGQMI 75 (86)
T ss_pred CCcEEEEEEE-EeCCCCcEEEEEEcCCcccccceeccccccccc----ccceeeeEEEEecCCcccCEEEEEEEeecceE
Confidence 7899999998 554 45588999877643210 10011110 01123357999999999999999999999998
Q ss_pred cccCC
Q psy15128 288 QQHGT 292 (292)
Q Consensus 288 ~~~~t 292 (292)
...+|
T Consensus 76 ~~~~t 80 (86)
T cd05862 76 AKNST 80 (86)
T ss_pred ecccE
Confidence 76654
No 210
>PF00047 ig: Immunoglobulin domain The Prosite family only concerns antibodies and MHCs.; InterPro: IPR013151 Members of the immunoglobulin superfamily are found in hundreds of proteins of different functions. Examples include antibodies, the giant muscle kinase titin and receptor tyrosine kinases. Immunoglobulin-like domains may be involved in protein-protein and protein-ligand interactions. The Pfam alignments do not include the first and last strand of the immunoglobulin-like domain.; PDB: 1B6U_A 3O4O_C 3VH8_H 1BIH_A 2C9A_A 2V5Y_A 1BQH_K 2ATP_A 3B9K_A 1NEZ_H ....
Probab=99.07 E-value=1.2e-10 Score=68.41 Aligned_cols=64 Identities=19% Similarity=0.334 Sum_probs=44.0
Q ss_pred CCceEEEeeCCCCCCCCeEEEeEcCeEeccCCCceEEecCCCccccccccccccccccccccceeEEEE
Q psy15128 213 GETALLECGPPKGQPEPTLHWKKNGQFIDLESSKRVSILGDPWFDSRRSRSIFGSVLGALSDDQWKLIA 281 (292)
Q Consensus 213 g~~~~l~C~~~~~~p~~~~~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~a 281 (292)
|+.++|.|.+..+.+...+.|++++..+.. .........+. .....|.|..+..+|+|.|.|.|
T Consensus 1 G~~v~L~C~~~~~~~~~~~~W~~~~~~~~~--~~~~~~~~~~~---~~~~~L~i~~v~~~d~G~Y~C~v 64 (64)
T PF00047_consen 1 GSSVTLTCSVSSGPPPTTVTWSKNGQSLPE--GSTTNRSTNSV---SSTSRLTISNVTPEDSGTYTCVV 64 (64)
T ss_dssp TSEEEEEEEEEESSSTSEEEEEETTTTTSE--EEEEEEEETTT---EEEEEEEESSCTGGGTEEEEEEE
T ss_pred CCeEEEEeecCCCCCCcEEEEEECCccccC--cceeEeecccc---eeeeEEEEccCCHHHCEEEEEEC
Confidence 789999999745677889999999875531 11111111110 00113899999999999999987
No 211
>cd07690 Ig1_CD4 First immunoglobulin (Ig) domain of CD4. Ig1_CD4; first immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy.
Probab=99.06 E-value=1e-09 Score=68.84 Aligned_cols=73 Identities=14% Similarity=0.207 Sum_probs=50.0
Q ss_pred cEEecCCcEEEEEEEeeeCCCeeEEEECCeEEeec---------cCCCcceeEE------eeecEEEEccCCCCCCeEEE
Q psy15128 46 QKVGLNGIASFQCVAEGSPLPSVFWTQEGSQVLMF---------PGNAYGHLHV------TQEGTLRIQGVQKEDAGFFV 110 (292)
Q Consensus 46 ~~~~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~---------~~~~~~~~~~------~~~~~l~i~~~~~~d~g~Y~ 110 (292)
+.+.+|+.++|.|.+.+.+.+.+.|++++...... ......+... .....|+|.+++.+|+|.|+
T Consensus 2 v~~~~G~~VtL~C~~s~~~~~~i~W~~~~~k~~~g~~~~l~~~~~~~~~~r~~~~~~~~~~g~~~L~I~~l~~sDsgtY~ 81 (94)
T cd07690 2 VLGKKGDTAELPCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRNLWDQGSFPLIIKNLKIEDSDTYI 81 (94)
T ss_pred eEeeCCCCEEEEEEeCCCCCcEEEEEECCcEEccCcCCEEEEecccccCCCCceecccCCCCeEEEEECCCCHHHCEEEE
Confidence 35678999999999988888899999765322100 0011111111 12346999999999999999
Q ss_pred EEEEeCCc
Q psy15128 111 CSALSVAG 118 (292)
Q Consensus 111 C~~~~~~~ 118 (292)
|.+.+..+
T Consensus 82 C~v~~~~~ 89 (94)
T cd07690 82 CEVEDKKE 89 (94)
T ss_pred EEECCccc
Confidence 99987644
No 212
>cd05759 Ig2_KIRREL3-like Second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). Ig2_KIRREL3-like: domain similar to the second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.
Probab=99.05 E-value=7.4e-10 Score=68.44 Aligned_cols=72 Identities=14% Similarity=0.194 Sum_probs=47.7
Q ss_pred ceEEEeeCCCCCCCCeEEEeEcCeEeccCCCceEEecCCCccccccccccccccccccccceeEEEEeeccccc
Q psy15128 215 TALLECGPPKGQPEPTLHWKKNGQFIDLESSKRVSILGDPWFDSRRSRSIFGSVLGALSDDQWKLIAKNIRNQQ 288 (292)
Q Consensus 215 ~~~l~C~~~~~~p~~~~~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~a~n~~g~~ 288 (292)
.+.|+|.+..+.|.+.++|+++|+++........ ...++... .....|.+......|.|.|+|.|.|.....
T Consensus 1 ~~~L~C~v~g~~P~~~v~W~~~g~~l~~~~~~~~-~~~~~~~~-~~~s~L~i~~~~~~~~~~y~C~a~n~~l~~ 72 (82)
T cd05759 1 PYNLTCRARGAKPAAEIIWFRDGEVLDGATYSKE-LLKDGKRE-TTVSTLPITPSDHDTGRTFTCRARNEALPT 72 (82)
T ss_pred CEEEEEEEeCccCCCEEEEEECCEEccCceeeee-EecCCCeE-EEEEEEEEeCceecCCCEEEEEEcCccCCC
Confidence 3689999955578899999999998853221122 22222211 222356676777778889999999976543
No 213
>cd05774 Ig_CEACAM_D1 First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM). IG_CEACAM_D1: immunoglobulin (Ig)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the D
Probab=99.04 E-value=4.1e-09 Score=67.59 Aligned_cols=77 Identities=16% Similarity=0.225 Sum_probs=55.0
Q ss_pred eCCCccEEecCCcEEEEEEEeeeCCCeeEEEECC-----eEEeec-cC--------CCcceeEEeeecEEEEccCCCCCC
Q psy15128 41 VRPQDQKVGLNGIASFQCVAEGSPLPSVFWTQEG-----SQVLMF-PG--------NAYGHLHVTQEGTLRIQGVQKEDA 106 (292)
Q Consensus 41 ~~~~~~~~~~g~~~~l~C~~~~~~~~~v~W~~~~-----~~~~~~-~~--------~~~~~~~~~~~~~l~i~~~~~~d~ 106 (292)
+.+.+..+.+|+++.|.|.........+.|+|+. ..+... .. ...++..+..+++|.|.+++..|+
T Consensus 3 ie~~p~~~~~G~~V~L~v~~~p~~~~~~~W~kg~~~~~~~~I~~y~~~~~~~~~gp~~~gR~~~~~ngSL~I~~v~~~D~ 82 (105)
T cd05774 3 IELVPPQVAEGENVLLLVHNLPENLLAYAWYKGKTVSPNFLIASYIISTNSSTPGPAYSGRETIYPNGSLLIQNVTQKDT 82 (105)
T ss_pred EeccCCcccCCCCEEEEecCCCCCceEEEEEcCCCCCCCEEEEEEECCCcccccCcccCCcEEEeCCCcEEEecCCcccC
Confidence 4455667889999999997643334489999963 122111 11 123566667788999999999999
Q ss_pred eEEEEEEEeCC
Q psy15128 107 GFFVCSALSVA 117 (292)
Q Consensus 107 g~Y~C~~~~~~ 117 (292)
|.|+|.+.+..
T Consensus 83 G~Y~~~v~~~~ 93 (105)
T cd05774 83 GFYTLQTITTN 93 (105)
T ss_pred EEEEEEEEeCC
Confidence 99999998765
No 214
>PF00047 ig: Immunoglobulin domain The Prosite family only concerns antibodies and MHCs.; InterPro: IPR013151 Members of the immunoglobulin superfamily are found in hundreds of proteins of different functions. Examples include antibodies, the giant muscle kinase titin and receptor tyrosine kinases. Immunoglobulin-like domains may be involved in protein-protein and protein-ligand interactions. The Pfam alignments do not include the first and last strand of the immunoglobulin-like domain.; PDB: 1B6U_A 3O4O_C 3VH8_H 1BIH_A 2C9A_A 2V5Y_A 1BQH_K 2ATP_A 3B9K_A 1NEZ_H ....
Probab=99.04 E-value=2.4e-10 Score=67.11 Aligned_cols=58 Identities=22% Similarity=0.477 Sum_probs=41.5
Q ss_pred CCcEEEEEEE-eeeCCCeeEEEECCeEEeeccCCCcceeEEee-ec----EEEEccCCCCCCeEEEEEE
Q psy15128 51 NGIASFQCVA-EGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQ-EG----TLRIQGVQKEDAGFFVCSA 113 (292)
Q Consensus 51 g~~~~l~C~~-~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~-~~----~l~i~~~~~~d~g~Y~C~~ 113 (292)
|+.++|.|.+ .+.+...+.|++++....... ...... .. .|.|.+++.+|+|.|+|.|
T Consensus 1 G~~v~L~C~~~~~~~~~~~~W~~~~~~~~~~~-----~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~v 64 (64)
T PF00047_consen 1 GSSVTLTCSVSSGPPPTTVTWSKNGQSLPEGS-----TTNRSTNSVSSTSRLTISNVTPEDSGTYTCVV 64 (64)
T ss_dssp TSEEEEEEEEEESSSTSEEEEEETTTTTSEEE-----EEEEEETTTEEEEEEEESSCTGGGTEEEEEEE
T ss_pred CCeEEEEeecCCCCCCcEEEEEECCccccCcc-----eeEeecccceeeeEEEEccCCHHHCEEEEEEC
Confidence 7889999999 556778999999876432110 001111 11 3999999999999999986
No 215
>cd05860 Ig4_SCFR Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR). Ig4_SCFR: The fourth Immunoglobulin (Ig)-like domain in stem cell factor receptor (SCFR). SCFR is organized as an extracellular component having five IG-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR. This fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth domain abolishes the ligand-induced dimerization of SCFR and completely inhibits signal transduction.
Probab=99.03 E-value=9.5e-10 Score=68.79 Aligned_cols=82 Identities=15% Similarity=0.172 Sum_probs=61.3
Q ss_pred cceEEeCCCceEEEeeCCCCCCCCe-EEEeEcCeEeccCCCceEEecCCCccccccccccccccccccccceeEEEEeec
Q psy15128 206 KDTRVASGETALLECGPPKGQPEPT-LHWKKNGQFIDLESSKRVSILGDPWFDSRRSRSIFGSVLGALSDDQWKLIAKNI 284 (292)
Q Consensus 206 ~~~~~~~g~~~~l~C~~~~~~p~~~-~~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~a~n~ 284 (292)
..+.+.+|+++.|.|.+ .++|+|. +.|.+++..+.......+..... ...+-...|.+..++.++.|.|+|.|.|.
T Consensus 11 ~~~~v~~gE~~~L~V~i-eAYP~p~~~~W~~~~~~l~~~~~~~~~~~~~--~~~rY~S~L~L~Rlk~~E~G~YTf~a~N~ 87 (101)
T cd05860 11 TTIFVNAGENLDLIVEY-EAYPKPEHQQWIYMNRTLTNTSDHYVKSRNE--SNNRYVSELHLTRLKGTEGGTYTFLVSNS 87 (101)
T ss_pred ceEEEECCCCEEEEEEE-EeCCCCeeeEEEcCCcccCccccceeEEecc--CceEEEEEEEEeecChhhCcEEEEEEECC
Confidence 46678999999999998 9999997 99999988765333322222111 11112346889999999999999999999
Q ss_pred cccccc
Q psy15128 285 RNQQQH 290 (292)
Q Consensus 285 ~g~~~~ 290 (292)
.+..+.
T Consensus 88 ~~~~s~ 93 (101)
T cd05860 88 DASASV 93 (101)
T ss_pred CCeEEE
Confidence 988764
No 216
>PF13895 Ig_2: Immunoglobulin domain; PDB: 2V5R_B 2V5M_A 2V5S_B 2GI7_A 3LAF_A 4DEP_C 3O4O_B 2EC8_A 2E9W_A 1J87_A ....
Probab=99.02 E-value=5.8e-10 Score=68.75 Aligned_cols=62 Identities=24% Similarity=0.471 Sum_probs=49.4
Q ss_pred eEEeCCCceEEEeeCCCCCCCCeEEEeEcCeEeccCCCceEEecCCCccccccccccccccccccccceeEEEEeecccc
Q psy15128 208 TRVASGETALLECGPPKGQPEPTLHWKKNGQFIDLESSKRVSILGDPWFDSRRSRSIFGSVLGALSDDQWKLIAKNIRNQ 287 (292)
Q Consensus 208 ~~~~~g~~~~l~C~~~~~~p~~~~~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~a~n~~g~ 287 (292)
..+.+|+.++|.|.+ .+.|.+.+.|++++..+....+ .+.+..+..+|+|.|+|.|.|..|.
T Consensus 9 ~~v~~g~~~~l~C~~-~~~p~~~~~w~~~~~~~~~~~~-----------------~~~~~~~~~~~~g~y~C~~~~~~~~ 70 (80)
T PF13895_consen 9 QSVEEGDSVTLTCSV-SGNPPPQVQWYKNGSPINSSQN-----------------GLFIPNVSPEDSGNYTCRASNGSGS 70 (80)
T ss_dssp SEEETTSEEEEEEEE-ESSSSSEEEEEETTEEEEEESS-----------------EEEESSEEGGGTEEEEEEEEETTEE
T ss_pred eEEeCCCcEEEEEEE-Ecccceeeeeeeeeeeeeeeee-----------------eeeeeeeccccCEEEEEEEEeCCCC
Confidence 568899999999998 6888899999999887752111 1445678889999999999996653
No 217
>cd05871 Ig_Semaphorin_classIII Immunoglobulin (Ig)-like domain of class III semaphorin. Ig_Semaphorin_class III; Immunoglobulin (Ig)-like domain of class III semaphorins. Semaphorins are classified into various classes on the basis of structural features additional to the Sema domain. Class III semaphorins are a vertebrate class having a Sema domain, an Ig domain, a short basic domain, and are secreted. They have been shown to be axonal guidance cues and have a part in the regulation of the cardiovascular, immune and respiratory systems. Sema3A, the prototype member of this class III subfamily, induces growth cone collapse and is an inhibitor of axonal sprouting. In perinatal rat cortex as a chemoattractant, it functions to direct, for pyramidal neurons, the orientated extension of apical dendrites. It may play a role, prior to the development of apical dendrites, in signaling the radial migration of newborn cortical neurons towards the upper layers. Sema3A selectively inhibits vascula
Probab=99.01 E-value=1.8e-09 Score=67.74 Aligned_cols=69 Identities=17% Similarity=0.268 Sum_probs=48.2
Q ss_pred ceEEeCCCceEEEeeCCCCCCCCeEEEeEc--CeEecc--CCCceEEecCCCccccccccccccccccccccceeEEEEe
Q psy15128 207 DTRVASGETALLECGPPKGQPEPTLHWKKN--GQFIDL--ESSKRVSILGDPWFDSRRSRSIFGSVLGALSDDQWKLIAK 282 (292)
Q Consensus 207 ~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~--g~~~~~--~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~a~ 282 (292)
.+.+.+|+.+.|.|.. . .|.+.+.|++. +..... ....+.... ...|.|..+..+|+|.|+|.|.
T Consensus 5 ~~~~~eG~~v~L~C~~-~-~p~p~v~Wykq~~g~~~~~~~~~~~r~~~~---------~~~L~I~~~~~~DsG~Y~C~a~ 73 (91)
T cd05871 5 VVYGVENNSTFLECLP-K-SPQASVKWLFQRGGDQRKEEVKTEERLIHT---------ERGLLLRSLQRSDAGVYTCTAV 73 (91)
T ss_pred EEEEecCCcEEEEEEC-C-CCCceEEEEEECCCCCccccccccccEEEe---------cCeEEEeeCChhHCEEEEEEEE
Confidence 4567899999999995 4 78899999983 322110 112233222 2358899999999999999998
Q ss_pred e-ccc
Q psy15128 283 N-IRN 286 (292)
Q Consensus 283 n-~~g 286 (292)
| ..|
T Consensus 74 ~~~~~ 78 (91)
T cd05871 74 EHSFS 78 (91)
T ss_pred ccCCe
Confidence 5 444
No 218
>smart00409 IG Immunoglobulin.
Probab=99.01 E-value=1.1e-08 Score=63.72 Aligned_cols=81 Identities=26% Similarity=0.474 Sum_probs=56.6
Q ss_pred ccEEecCCcEEEEEEEeeeCCCeeEEEEC-CeEEeeccCCCcceeEEeeecEEEEccCCCCCCeEEEEEEEeCCcCeeEE
Q psy15128 45 DQKVGLNGIASFQCVAEGSPLPSVFWTQE-GSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVR 123 (292)
Q Consensus 45 ~~~~~~g~~~~l~C~~~~~~~~~v~W~~~-~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~~~~~~~ 123 (292)
...+..|+.+.|.|.+.+.+.+.+.|+++ +..+. ...............|.|.++..+|.|.|.|.+.+..+.....
T Consensus 3 ~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~v~--~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~v~~~~~~~~~~ 80 (86)
T smart00409 3 SVTVKEGESVTLSCEVSGSPPPEVTWYKQGGKLLA--ESGRFSVSRSGSNSTLTISNVTPEDSGTYTCAATNSSGSASST 80 (86)
T ss_pred cEEEeCCCeEEEEEEEccCCCCeEEEEECCCEEcC--CCCcEEEEEcCCeeEEEEEeeccccCeEEEEEEEcCCCeEEEE
Confidence 45677899999999998887889999998 55442 1111111111113589999999999999999999776655544
Q ss_pred EEEE
Q psy15128 124 AFLQ 127 (292)
Q Consensus 124 ~~l~ 127 (292)
..|.
T Consensus 81 ~~l~ 84 (86)
T smart00409 81 TTLT 84 (86)
T ss_pred EEEE
Confidence 4443
No 219
>smart00410 IG_like Immunoglobulin like. IG domains that cannot be classified into one of IGv1, IGc1, IGc2, IG.
Probab=99.01 E-value=1.1e-08 Score=63.72 Aligned_cols=81 Identities=26% Similarity=0.474 Sum_probs=56.6
Q ss_pred ccEEecCCcEEEEEEEeeeCCCeeEEEEC-CeEEeeccCCCcceeEEeeecEEEEccCCCCCCeEEEEEEEeCCcCeeEE
Q psy15128 45 DQKVGLNGIASFQCVAEGSPLPSVFWTQE-GSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVR 123 (292)
Q Consensus 45 ~~~~~~g~~~~l~C~~~~~~~~~v~W~~~-~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~~~~~~~ 123 (292)
...+..|+.+.|.|.+.+.+.+.+.|+++ +..+. ...............|.|.++..+|.|.|.|.+.+..+.....
T Consensus 3 ~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~v~--~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~v~~~~~~~~~~ 80 (86)
T smart00410 3 SVTVKEGESVTLSCEVSGSPPPEVTWYKQGGKLLA--ESGRFSVSRSGSNSTLTISNVTPEDSGTYTCAATNSSGSASST 80 (86)
T ss_pred cEEEeCCCeEEEEEEEccCCCCeEEEEECCCEEcC--CCCcEEEEEcCCeeEEEEEeeccccCeEEEEEEEcCCCeEEEE
Confidence 45677899999999998887889999998 55442 1111111111113589999999999999999999776655544
Q ss_pred EEEE
Q psy15128 124 AFLQ 127 (292)
Q Consensus 124 ~~l~ 127 (292)
..|.
T Consensus 81 ~~l~ 84 (86)
T smart00410 81 TTLT 84 (86)
T ss_pred EEEE
Confidence 4443
No 220
>cd05872 Ig_Sema4B_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4B. Ig_Sema4B_like; Immunoglobulin (Ig)-like domain of Sema4B_like. Sema4B is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4B has extracellular Sema and Ig domains, a transmembrane domain and a short cytoplasmic domain. Sema4B has been shown to preferentially regulate the development of the postsynaptic specialization at the glutamatergic synapses. This cytoplasmic domain includes a PDZ-binding motif upon which the synaptic localization of Sem4B is dependent. Sema4B is a ligand of CLCP1, CLCP1 was identified in an expression profiling analysis, which compared a highly metastic lung cancer subline with its low metastic parental line. Sema4B was shown to promote CLCP1 endocytosis, and their interaction is a potential target for therapeutic intervention of metastasis.
Probab=99.01 E-value=1.7e-09 Score=66.09 Aligned_cols=65 Identities=17% Similarity=0.280 Sum_probs=52.0
Q ss_pred cceEEeCCCceEEEeeCCCCCCCCeEEEeEcCeEeccCCCceEEecCCCccccccccccccccccccccceeEEEEee
Q psy15128 206 KDTRVASGETALLECGPPKGQPEPTLHWKKNGQFIDLESSKRVSILGDPWFDSRRSRSIFGSVLGALSDDQWKLIAKN 283 (292)
Q Consensus 206 ~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~a~n 283 (292)
...++.+|+++.|.|.. .+ +.+.+.|+++|..+. .+.++..... .|.|..++..|+|.|.|.|..
T Consensus 4 ~~~tv~~g~~v~L~C~~-~s-~~A~v~W~~ng~~l~--~~~r~~~~~~---------GLlI~~~~~~dsG~Y~C~s~E 68 (85)
T cd05872 4 KNRTVAPGADVVLPCQL-RS-NLASPVWLFNGTPLN--AQFSYRVGTD---------GLLILVTSPEHSGTYRCYSEE 68 (85)
T ss_pred eEEEEecCCCEEEECCC-CC-CCccEEEEECCcccC--CCcceEEeCC---------CCEEEECCHhhCEEEEEEEec
Confidence 35688999999999996 44 467999999999885 3355555555 377888999999999999973
No 221
>cd05860 Ig4_SCFR Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR). Ig4_SCFR: The fourth Immunoglobulin (Ig)-like domain in stem cell factor receptor (SCFR). SCFR is organized as an extracellular component having five IG-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR. This fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth domain abolishes the ligand-induced dimerization of SCFR and completely inhibits signal transduction.
Probab=98.97 E-value=1.9e-08 Score=63.00 Aligned_cols=84 Identities=13% Similarity=0.116 Sum_probs=61.7
Q ss_pred CccEEecCCcEEEEEEEeeeCCCe-eEEEECCeEEeeccCCCcceeEE----eeecEEEEccCCCCCCeEEEEEEEeCCc
Q psy15128 44 QDQKVGLNGIASFQCVAEGSPLPS-VFWTQEGSQVLMFPGNAYGHLHV----TQEGTLRIQGVQKEDAGFFVCSALSVAG 118 (292)
Q Consensus 44 ~~~~~~~g~~~~l~C~~~~~~~~~-v~W~~~~~~~~~~~~~~~~~~~~----~~~~~l~i~~~~~~d~g~Y~C~~~~~~~ 118 (292)
....+.+|+++.|.|.+.++|+|. +.|.+++..+...... ...... ...+.|++..+..++.|.|+|.+.|...
T Consensus 11 ~~~~v~~gE~~~L~V~ieAYP~p~~~~W~~~~~~l~~~~~~-~~~~~~~~~~rY~S~L~L~Rlk~~E~G~YTf~a~N~~~ 89 (101)
T cd05860 11 TTIFVNAGENLDLIVEYEAYPKPEHQQWIYMNRTLTNTSDH-YVKSRNESNNRYVSELHLTRLKGTEGGTYTFLVSNSDA 89 (101)
T ss_pred ceEEEECCCCEEEEEEEEeCCCCeeeEEEcCCcccCccccc-eeEEeccCceEEEEEEEEeecChhhCcEEEEEEECCCC
Confidence 356788999999999999999997 9999987654222111 111111 1235799999999999999999999887
Q ss_pred CeeEEEEEEE
Q psy15128 119 STTVRAFLQV 128 (292)
Q Consensus 119 ~~~~~~~l~v 128 (292)
.......|.|
T Consensus 90 ~~s~tF~l~v 99 (101)
T cd05860 90 SASVTFNVYV 99 (101)
T ss_pred eEEEEEEEEE
Confidence 7666666554
No 222
>cd05717 Ig1_Necl-1-3_like First (N-terminal) immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-3 (also known as cell adhesion molecules CADM3, CADM1, and CADM2 respectively). Ig1_Necl-1-3_like: N-terminal immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), and Necl-3 (CADM2). At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1, Necl-2, and Necl-3 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the form
Probab=98.97 E-value=2.6e-09 Score=68.08 Aligned_cols=77 Identities=21% Similarity=0.302 Sum_probs=52.3
Q ss_pred cceEEeCCCceEEEeeCCCCCCCCeEEEeEcCeEe-ccC-----CCceEEecCCCccccccccccccccccccccceeEE
Q psy15128 206 KDTRVASGETALLECGPPKGQPEPTLHWKKNGQFI-DLE-----SSKRVSILGDPWFDSRRSRSIFGSVLGALSDDQWKL 279 (292)
Q Consensus 206 ~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~g~~~-~~~-----~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C 279 (292)
+...+.+|++++|.|.+ .+.+.+.+.|++.+..+ ... ...++...... .....|.|..+..+|+|.|+|
T Consensus 5 ~~~~v~~G~~v~L~C~~-~~~~~~~v~W~~p~~~~~~~~~~~~~~~~r~~~~~~~----~~~~~L~I~~v~~~DsG~Y~C 79 (95)
T cd05717 5 QDVTVVEGGTATLKCRV-KNNDNSSLQWSNPNQQTLYFNDKRALRDNRIQLVNFS----ANELSISISNVSLSDEGRYTC 79 (95)
T ss_pred CcEEEcCCCCEEEEEEE-CCCCCceEEEeCCCCcEEEeccccccccCcEEEEcCC----CCeeEEEEccCCcccCEEEEE
Confidence 46788999999999998 67788899998643221 100 11232221110 122368999999999999999
Q ss_pred EEeecccc
Q psy15128 280 IAKNIRNQ 287 (292)
Q Consensus 280 ~a~n~~g~ 287 (292)
.+.+....
T Consensus 80 ~~~~~~~~ 87 (95)
T cd05717 80 SLYTMPVQ 87 (95)
T ss_pred EEecCCCc
Confidence 99986543
No 223
>cd05897 Ig2_IL1R2_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2). Ig2_IL1R2_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds the type II (IL1R2) represented in this group. Mature IL1R2 consists of three IG-like domains, a transmembrane domain, and a short cytoplasmic domain. It lacks the large cytoplasmic domain of Mature IL1R1, and does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta.
Probab=98.94 E-value=9.6e-09 Score=64.36 Aligned_cols=75 Identities=12% Similarity=0.170 Sum_probs=51.8
Q ss_pred cEEecCCcEEEEEEE-ee----eCCCeeEEEECCeEEeeccCCCcceeEEeeecEEEEccCCCCCCeEEEEEEEeCCcCe
Q psy15128 46 QKVGLNGIASFQCVA-EG----SPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGST 120 (292)
Q Consensus 46 ~~~~~g~~~~l~C~~-~~----~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~~~~ 120 (292)
..+..|.+..|.|.- .+ .+.+.+.|||++..+.... .. .........|.|.++..+|+|.|+|.+.+..+..
T Consensus 5 ~~~~~~~~~~l~Cp~~~~f~~~~~~~~v~WYKd~~~l~~~~-~~--~~~~~~~~~L~I~~v~~~D~G~YtC~~~~~~~g~ 81 (95)
T cd05897 5 QILFTSTSGKLVCPDLSDFTINRTDVELQWYKDSVLLDKDN-EK--FYSLKGSTYLHIIDVSLNDSGYYTCKLQFTHEGK 81 (95)
T ss_pred eEeccccCcEEECCCHHHcccCCCCCcEEEccCCEECcCCC-cc--eEecCCCCEEEEEEcChhhCEEEEEEEEEeeCCE
Confidence 346678899999963 22 3566899999998763111 11 1111234579999999999999999999876654
Q ss_pred eEE
Q psy15128 121 TVR 123 (292)
Q Consensus 121 ~~~ 123 (292)
...
T Consensus 82 ~y~ 84 (95)
T cd05897 82 KYN 84 (95)
T ss_pred EEE
Confidence 433
No 224
>cd05881 Ig1_Necl-2 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Ig1_Necl-2: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-2, Necl-2 (also known as cell adhesion molecule 1 (CADM1), SynCAM1, IGSF4A, Tslc1, sgIGSF, and RA175). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-2 is expressed in a wide variety of tissues, and is a
Probab=98.93 E-value=2e-08 Score=62.99 Aligned_cols=73 Identities=15% Similarity=0.242 Sum_probs=51.5
Q ss_pred CccEEecCCcEEEEEEEeeeCCCeeEEEECCeEEeeccC---CCcceeEEe----eecEEEEccCCCCCCeEEEEEEEeC
Q psy15128 44 QDQKVGLNGIASFQCVAEGSPLPSVFWTQEGSQVLMFPG---NAYGHLHVT----QEGTLRIQGVQKEDAGFFVCSALSV 116 (292)
Q Consensus 44 ~~~~~~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~---~~~~~~~~~----~~~~l~i~~~~~~d~g~Y~C~~~~~ 116 (292)
.++.+.+|++++|.|.+.+.....+.|++.+..+..... ....++... ....|+|.+++.+|.|.|+|.+...
T Consensus 5 ~nvtv~~G~ta~L~C~v~~~~~~~v~w~~~~~~~i~~~~~~~~~d~Rf~~~~~~~~~~tL~I~~vq~~D~G~Y~Cqv~t~ 84 (95)
T cd05881 5 EDVTVVEGEVAIISCRVKNNDDSVIQLLNPNRQTIYFRDVRPLKDSRFQLVNFSSNELRVSLSNVSLSDEGRYFCQLYTD 84 (95)
T ss_pred CceEEcCCCcEEEEEEEccCCccEEEEEecCCcEEEecCccccCCcCEEEEeCCCCEEEEEECcCCcccCEEEEEEEEcc
Confidence 467788999999999998876677899887754421111 112222222 2336999999999999999998753
No 225
>smart00409 IG Immunoglobulin.
Probab=98.92 E-value=9.8e-09 Score=63.98 Aligned_cols=76 Identities=22% Similarity=0.380 Sum_probs=57.5
Q ss_pred cceEEeCCCceEEEeeCCCCCCCCeEEEeEc-CeEeccCCCceEEecCCCccccccccccccccccccccceeEEEEeec
Q psy15128 206 KDTRVASGETALLECGPPKGQPEPTLHWKKN-GQFIDLESSKRVSILGDPWFDSRRSRSIFGSVLGALSDDQWKLIAKNI 284 (292)
Q Consensus 206 ~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~a~n~ 284 (292)
....+..|+++.|.|.+ .+.+.+.+.|+++ +..+. ...++....... ...|.|..+...|+|.|.|.+.|.
T Consensus 2 ~~~~~~~g~~~~l~C~~-~~~~~~~~~W~~~~~~~v~--~~~~~~~~~~~~-----~~~l~i~~~~~~d~G~Y~C~v~~~ 73 (86)
T smart00409 2 PSVTVKEGESVTLSCEV-SGSPPPEVTWYKQGGKLLA--ESGRFSVSRSGS-----NSTLTISNVTPEDSGTYTCAATNS 73 (86)
T ss_pred CcEEEeCCCeEEEEEEE-ccCCCCeEEEEECCCEEcC--CCCcEEEEEcCC-----eeEEEEEeeccccCeEEEEEEEcC
Confidence 35678899999999998 6668889999998 87775 223333322221 236889999999999999999988
Q ss_pred ccccc
Q psy15128 285 RNQQQ 289 (292)
Q Consensus 285 ~g~~~ 289 (292)
.|...
T Consensus 74 ~~~~~ 78 (86)
T smart00409 74 SGSAS 78 (86)
T ss_pred CCeEE
Confidence 77654
No 226
>smart00410 IG_like Immunoglobulin like. IG domains that cannot be classified into one of IGv1, IGc1, IGc2, IG.
Probab=98.92 E-value=9.8e-09 Score=63.98 Aligned_cols=76 Identities=22% Similarity=0.380 Sum_probs=57.5
Q ss_pred cceEEeCCCceEEEeeCCCCCCCCeEEEeEc-CeEeccCCCceEEecCCCccccccccccccccccccccceeEEEEeec
Q psy15128 206 KDTRVASGETALLECGPPKGQPEPTLHWKKN-GQFIDLESSKRVSILGDPWFDSRRSRSIFGSVLGALSDDQWKLIAKNI 284 (292)
Q Consensus 206 ~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~a~n~ 284 (292)
....+..|+++.|.|.+ .+.+.+.+.|+++ +..+. ...++....... ...|.|..+...|+|.|.|.+.|.
T Consensus 2 ~~~~~~~g~~~~l~C~~-~~~~~~~~~W~~~~~~~v~--~~~~~~~~~~~~-----~~~l~i~~~~~~d~G~Y~C~v~~~ 73 (86)
T smart00410 2 PSVTVKEGESVTLSCEV-SGSPPPEVTWYKQGGKLLA--ESGRFSVSRSGS-----NSTLTISNVTPEDSGTYTCAATNS 73 (86)
T ss_pred CcEEEeCCCeEEEEEEE-ccCCCCeEEEEECCCEEcC--CCCcEEEEEcCC-----eeEEEEEeeccccCeEEEEEEEcC
Confidence 35678899999999998 6668889999998 87775 223333322221 236889999999999999999988
Q ss_pred ccccc
Q psy15128 285 RNQQQ 289 (292)
Q Consensus 285 ~g~~~ 289 (292)
.|...
T Consensus 74 ~~~~~ 78 (86)
T smart00410 74 SGSAS 78 (86)
T ss_pred CCeEE
Confidence 77654
No 227
>cd05759 Ig2_KIRREL3-like Second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). Ig2_KIRREL3-like: domain similar to the second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.
Probab=98.91 E-value=1.5e-08 Score=62.53 Aligned_cols=75 Identities=20% Similarity=0.272 Sum_probs=49.8
Q ss_pred EEEEEEEee-eCCCeeEEEECCeEEeeccCCC---cceeEEeeecEEEEccCCCCCCeEEEEEEEeCCcCeeEEEEEEE
Q psy15128 54 ASFQCVAEG-SPLPSVFWTQEGSQVLMFPGNA---YGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQV 128 (292)
Q Consensus 54 ~~l~C~~~~-~~~~~v~W~~~~~~~~~~~~~~---~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~~~~~~~~~l~v 128 (292)
+.|.|.+.| .|.+.+.|++++..+....... .........+.|.+.....+|.|.|+|.+.|..........+.+
T Consensus 2 ~~L~C~v~g~~P~~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~~~~~y~C~a~n~~l~~~~~~s~~l 80 (82)
T cd05759 2 YNLTCRARGAKPAAEIIWFRDGEVLDGATYSKELLKDGKRETTVSTLPITPSDHDTGRTFTCRARNEALPTGKETSVTL 80 (82)
T ss_pred EEEEEEEeCccCCCEEEEEECCEEccCceeeeeEecCCCeEEEEEEEEEeCceecCCCEEEEEEcCccCCCCcEEEEEE
Confidence 689999987 5888999999987653111000 00011222347888888888999999999987665555554443
No 228
>cd05879 Ig_P0 Immunoglobulin (Ig)-like domain of Protein zero (P0). Ig_P0ex: immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin.
Probab=98.90 E-value=5e-08 Score=63.93 Aligned_cols=78 Identities=15% Similarity=0.235 Sum_probs=50.7
Q ss_pred CCccEEecCCcEEEEEEEeee----CCCeeEEEEC---------------CeEEeeccCCCcceeEE-----eeecEEEE
Q psy15128 43 PQDQKVGLNGIASFQCVAEGS----PLPSVFWTQE---------------GSQVLMFPGNAYGHLHV-----TQEGTLRI 98 (292)
Q Consensus 43 ~~~~~~~~g~~~~l~C~~~~~----~~~~v~W~~~---------------~~~~~~~~~~~~~~~~~-----~~~~~l~i 98 (292)
+..+.+..|++++|.|.+... +...+.|.+. +.......+.-.+|..+ ..+.+|.|
T Consensus 5 ~~ev~a~~G~~v~L~C~f~~~~~~~~~~~v~W~~~~~~~~~~~~v~~y~~g~~~~~~~~~f~~Rv~f~g~~~~~daSI~I 84 (116)
T cd05879 5 DREVYGTVGSDVTLSCSFWSSEWISDDISFTWHYQPDGSRDAISIFHYGKGQPYIDDVGPFKERIEWVGNPSRKDGSIVI 84 (116)
T ss_pred cceEEEEcCCcEEEEEEEecCCCCCCcEEEEEEEcCCCCCccEEEEEeCCCceecccccCccCceEEeCCCCcCeeEEEE
Confidence 345678889999999998653 2348999432 11111001111223433 23458999
Q ss_pred ccCCCCCCeEEEEEEEeCCcCe
Q psy15128 99 QGVQKEDAGFFVCSALSVAGST 120 (292)
Q Consensus 99 ~~~~~~d~g~Y~C~~~~~~~~~ 120 (292)
.+++.+|.|.|+|.+.|.....
T Consensus 85 ~nv~~sD~G~Y~C~v~n~p~~~ 106 (116)
T cd05879 85 HNLDYTDNGTFTCDVKNPPDIV 106 (116)
T ss_pred ccCCcccCEEEEEEEEcCCCcC
Confidence 9999999999999999865543
No 229
>cd05751 Ig1_LILRB1_like First immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1) and similar proteins. Ig1_LILRB1_like: domain similar to the first immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1). This group includes, LILRA5 (LIR9), an activating natural cytotoxicity receptor NKp46, and the immune-type receptor glycoprotein VI (GPVI). LILRs are a family of immunoreceptors expressed on expressed on T and B cells, on monocytes, dendritic cells, and subgroups of natural killer (NK) cells. The human LILR family contains nine proteins (LILRA1-3,and 5, and LILRB1-5). From functional assays, and as the cytoplasmic domains of various LILRs, for example LILRB1 (LIR-1), LILRB2 (LIR-2), and LILRB3 (LIR-3) contain immunoreceptor tyrosine-based inhibitory motifs (ITIMs) it is thought that LIR proteins are inhibitory receptors. Of the eight LIR family proteins, only LIR-1(LILRB1), and LIR-2 (LILRB2),
Probab=98.89 E-value=1.2e-08 Score=64.21 Aligned_cols=73 Identities=21% Similarity=0.250 Sum_probs=52.8
Q ss_pred CcEEeCCCccEEecCCcEEEEEEEeeeCCCeeEEEECCeEEeeccCCCcceeEEeeecEEEEccCCCCCCeEEEEEEEeC
Q psy15128 37 PSFVVRPQDQKVGLNGIASFQCVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSV 116 (292)
Q Consensus 37 p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~ 116 (292)
|.+...+. ..+.+|+.++|.|... .+...+.|+++|....... .......+.+.|.+++.+|+|.|+|.+.+.
T Consensus 3 P~L~a~p~-~vV~~G~~VtL~C~~~-~~~~~f~l~k~g~~~~~~~-----~~~~~~~~~f~i~~v~~~~~G~Y~C~~~~~ 75 (91)
T cd05751 3 PSLWAEPS-SVVPLGKPVTLRCQGP-YGAVEYRLYREGSTFAVKK-----PPEPQNKAKFFIPSMKREHAGRYRCYYRSG 75 (91)
T ss_pred CEEEecCC-CccCCCCcEEEEEecC-CCCCEEEEEECCCCccccc-----cCCCceeEEEEccCCChhHCEEEEEEEECC
Confidence 44555553 4678999999999885 5666899999987543110 011233557999999999999999999875
No 230
>cd05741 Ig_CEACAM_D1_like First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) and similar proteins. Ig_CEACAM_D1_like : immunoglobulin (IG)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily-like. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surf
Probab=98.88 E-value=2.3e-08 Score=63.35 Aligned_cols=68 Identities=21% Similarity=0.352 Sum_probs=49.5
Q ss_pred CCcEEEEEEEeeeCCCeeEEEECCeEEe-------------eccCCCcceeEEeeecEEEEccCCCCCCeEEEEEEEeCC
Q psy15128 51 NGIASFQCVAEGSPLPSVFWTQEGSQVL-------------MFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVA 117 (292)
Q Consensus 51 g~~~~l~C~~~~~~~~~v~W~~~~~~~~-------------~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~ 117 (292)
|++|+|.|.........+.|++...... .......++.....++.|.|.+++.+|+|.|+|.+....
T Consensus 1 G~~VtL~c~~~~~~~~~i~W~~~~~~~~~~~i~~~~~~~~~~~~~~~~~R~~~~~~~sL~I~~l~~~DsG~Y~c~v~~~~ 80 (92)
T cd05741 1 GESVTLPVSNLPENLQEITWYKGKDKSVEAEIASYIATNSTVFGPAYSGRETIYPNGSLLIQNLTKEDSGTYTLQIISTN 80 (92)
T ss_pred CCcEEEEcccCCCCCEEEEEECCCCCCcceEEEEEecCCceeECCCcCCeEEEcCCceEEEccCCchhcEEEEEEEEcCC
Confidence 7899999988765556899998653221 011122355566667899999999999999999998765
Q ss_pred c
Q psy15128 118 G 118 (292)
Q Consensus 118 ~ 118 (292)
+
T Consensus 81 ~ 81 (92)
T cd05741 81 G 81 (92)
T ss_pred C
Confidence 3
No 231
>cd05883 Ig2_Necl-2 Second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Ig2_Necl-2: second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Nectin-like molecules (Necls) have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is expressed in a wide variety of tissues, and is a putative tumour suppressor gene, which is downregulated in aggressive neuroblastoma. Ig domains are likely to participate in ligand binding and recognition.
Probab=98.88 E-value=1.1e-08 Score=61.92 Aligned_cols=68 Identities=12% Similarity=0.112 Sum_probs=43.8
Q ss_pred ceEEEeeCCCCCCCCeEEEeEcCeEeccCCCceEEecCCCccccccccccccccccccccceeEEEEeeccc
Q psy15128 215 TALLECGPPKGQPEPTLHWKKNGQFIDLESSKRVSILGDPWFDSRRSRSIFGSVLGALSDDQWKLIAKNIRN 286 (292)
Q Consensus 215 ~~~l~C~~~~~~p~~~~~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~a~n~~g 286 (292)
.+.|.|.+..+.|.+.|.|+++++++.... ........++ .....|.+..-...|...|+|.|.|..=
T Consensus 1 ~~~L~C~s~gSkP~A~I~W~k~~~~l~~~~-~~~~~~~~~~---t~~S~L~~~p~~eDdG~~~~C~a~~~~l 68 (82)
T cd05883 1 EIELNCTAMASKPAATIRWFKGNKELTGKS-TVEETWSRMF---TVTSQLMLKVTKEDDGVPVICLVDHPAV 68 (82)
T ss_pred CEEEEEEecCCCCCCEEEEEECCEECcCcc-cceeccCCCc---EEEEEEEEECchhhCCCEEEEEEcCccc
Confidence 368999998889999999999999995321 1111111221 2233455544444444599999999763
No 232
>cd05896 Ig1_IL1RAPL-1_like First immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1). Ig1_ IL1RAPL-1_like: domain similar to the first immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1). IL-1 alpha and IL-1 beta are cytokines which participates in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of
Probab=98.85 E-value=1.3e-08 Score=64.02 Aligned_cols=72 Identities=19% Similarity=0.166 Sum_probs=51.1
Q ss_pred cceEEeCCCceEEEeeCCC----------CCCCCeEEEeEcCeEeccCC-----CceEEecCCCcccccccccccccccc
Q psy15128 206 KDTRVASGETALLECGPPK----------GQPEPTLHWKKNGQFIDLES-----SKRVSILGDPWFDSRRSRSIFGSVLG 270 (292)
Q Consensus 206 ~~~~~~~g~~~~l~C~~~~----------~~p~~~~~W~~~g~~~~~~~-----~~~~~~~~~~~~~~~~~~~l~i~~~~ 270 (292)
....+.+|+.+.|.|.... ......+.|+|++..+.... ..|+...++ .|-+..+.
T Consensus 8 ~~~~~~~GE~v~l~C~~~~~~~~~~~~~~~~~~~~v~WyK~~~~~~~~~~~~~~~~Ri~~~~~---------~Lwf~Pa~ 78 (104)
T cd05896 8 KKYMVLAGEPVRIKCALFYGYIRTNYSMAQSAGLSLMWYKSSGDGEEPIEIIFDGVRMSKEED---------SIWFRPAE 78 (104)
T ss_pred eeEEEcCCCeEEEECCCccccccccccccccCCceEEEEECCCCCCCCCcccccceeEEEeCC---------EEEEEeCC
Confidence 3467889999999999522 12234799999975553212 124444444 68888999
Q ss_pred ccccceeEEEEeeccc
Q psy15128 271 ALSDDQWKLIAKNIRN 286 (292)
Q Consensus 271 ~~~~g~y~C~a~n~~g 286 (292)
.+|+|.|+|++.|...
T Consensus 79 ~eDSG~Y~C~~rN~t~ 94 (104)
T cd05896 79 LQDSGLYTCVLRNSTY 94 (104)
T ss_pred hhhCeEEEEEECCCCc
Confidence 9999999999999764
No 233
>cd05761 Ig2_Necl-1-4_like Second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-4 (also known as cell adhesion molecules CADM3, CADM1, CADM2, and CADM4, respectively). Ig2_Necl-1-4_like: domain similar to the second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), Necl-3 (CADM2) and Necl-4 (CADM4). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cel
Probab=98.84 E-value=1.6e-08 Score=62.26 Aligned_cols=71 Identities=13% Similarity=0.059 Sum_probs=46.0
Q ss_pred ceEEEeeCCCCCCCCeEEEeEcCeEeccCCCceEEecCCCccccccccccccccccccccceeEEEEeeccccc
Q psy15128 215 TALLECGPPKGQPEPTLHWKKNGQFIDLESSKRVSILGDPWFDSRRSRSIFGSVLGALSDDQWKLIAKNIRNQQ 288 (292)
Q Consensus 215 ~~~l~C~~~~~~p~~~~~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~a~n~~g~~ 288 (292)
.+.|.|.+..++|.+.+.|+++|+++.... .......++.+. ....|.+......+.+.|+|.|.|.....
T Consensus 1 ~~~L~C~~~~~~P~~~v~W~~~~~~l~~~~-~~~~~~~~~~~~--~~s~l~~~~~~~d~g~~~~C~v~h~~l~~ 71 (82)
T cd05761 1 EVELTCTSSGSKPAATIRWFKGDKELKGVK-LKEEDENGKTFT--VTSSLRFQVDREDDGAPIICRVDHPALKS 71 (82)
T ss_pred CEEEEEEecCcCcCCeEEEEECCEEccCce-eeEecCCCCEEE--EEEEEEEEcchhhCCCEEEEEEeChhcCC
Confidence 368999997778999999999999985222 112222222222 22234444444555669999999988764
No 234
>PF13927 Ig_3: Immunoglobulin domain; PDB: 2D3V_A 1G0X_A 1VDG_A 1P7Q_D 3D2U_H 1UFU_A 1UGN_A 3VH8_H 3OQ3_B 4DKD_C ....
Probab=98.84 E-value=8.7e-09 Score=62.51 Aligned_cols=73 Identities=27% Similarity=0.522 Sum_probs=48.3
Q ss_pred CcEEeCCCccEEecCCcEEEEEEEeeeC-CCeeEEEECCeEEeeccCCCcceeEEeeecEEEEccCCCCCCeEEEEEEEe
Q psy15128 37 PSFVVRPQDQKVGLNGIASFQCVAEGSP-LPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALS 115 (292)
Q Consensus 37 p~~~~~~~~~~~~~g~~~~l~C~~~~~~-~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~ 115 (292)
|.+...+.......+. +.|.|.+.+.+ .+.+.|+ ...... ...........+.|.|.++..+|.|.|+|.|.|
T Consensus 2 P~I~~~~~~~~~~~~~-~~l~C~~~~~~~~~~~~W~-~~~~~~----~~~~~~~~~~~~~L~i~~v~~~~~g~y~C~a~N 75 (75)
T PF13927_consen 2 PQISVPPPPVVTSGGS-VTLTCSAEGGPPPPSISWY-DSNPSF----NSNSRGSSSSNSTLTISNVTRSDNGTYTCIASN 75 (75)
T ss_dssp SEEEEESTSEEETTEE-EEEEEEESSEESSEEEEEE-TEEEEE----EEEEEEEEEEEEEEEESSCCGGGTEEEEEEEEE
T ss_pred CEEEEcCCCcEeecee-EEEEEEEccccCCeEEEEE-ecCCce----eeeeeeccceeeEEEEccCCHHhCcEEEEEEEC
Confidence 4444444444343333 99999998876 7799999 111110 011123344566899999999999999999976
No 235
>cd05900 Ig_Aggrecan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan. Ig_Aggrecan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan. These aggregates contribute to the tissue's load bearing properties. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Aggrecan has a wide distribution in connective tissue and extracellular matrices. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes.
Probab=98.83 E-value=1.1e-07 Score=61.93 Aligned_cols=80 Identities=18% Similarity=0.339 Sum_probs=52.6
Q ss_pred cCCcEEEEEEEeeeC------------CCeeEEEECC--e--EEee-cc-----CCCc-ceeEEe------eecEEEEcc
Q psy15128 50 LNGIASFQCVAEGSP------------LPSVFWTQEG--S--QVLM-FP-----GNAY-GHLHVT------QEGTLRIQG 100 (292)
Q Consensus 50 ~g~~~~l~C~~~~~~------------~~~v~W~~~~--~--~~~~-~~-----~~~~-~~~~~~------~~~~l~i~~ 100 (292)
.|++++|.|.+.... .+.|.|+|.. . .+.. .. ...+ .|..+. .+..|+|.+
T Consensus 1 ~G~~VtLpC~~~~~~~~~~~~~~~~~~~~~I~W~k~~~g~~~~ii~~~~~~~~~~~~f~~R~sl~~~~~~~~~asL~I~n 80 (112)
T cd05900 1 LGSSLLIPCYFQDPIAKDPGAPTVAPLSPRIKWSFISKEKESVLLVATEGKVRVNTEYLDRVSLPNYPAIPSDATLEITE 80 (112)
T ss_pred CCCcEEEeeEEeCCcCccccccccCCCCCEEEEEEecCCCccEEEEEECCeEEECccccCeEEecccCCCCCCcEEEEee
Confidence 489999999886532 3589999842 1 1111 11 0111 344442 356899999
Q ss_pred CCCCCCeEEEEEEEeCCcCeeEEEEEEEE
Q psy15128 101 VQKEDAGFFVCSALSVAGSTTVRAFLQVT 129 (292)
Q Consensus 101 ~~~~d~g~Y~C~~~~~~~~~~~~~~l~v~ 129 (292)
++.+|+|.|+|.+.+..........|.|.
T Consensus 81 l~~sDsG~Y~C~V~~g~~~~~~~v~l~v~ 109 (112)
T cd05900 81 LRSNDSGTYRCEVMHGIEDNYDTVEVQVK 109 (112)
T ss_pred cccccCEEEEEEEecCCCCceeEEEEEEE
Confidence 99999999999998765555655666554
No 236
>cd07705 Ig2_Necl-1 Second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). Ig2_Necl-1: second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue and is important to the formation of synapses, axon bundles, and myel
Probab=98.81 E-value=2.9e-08 Score=61.11 Aligned_cols=70 Identities=19% Similarity=0.200 Sum_probs=46.8
Q ss_pred eEEEeeCCCCCCCCeEEEeEcCeEeccCCCceEEecCCC-ccccccccccccccccccccceeEEEEeeccccc
Q psy15128 216 ALLECGPPKGQPEPTLHWKKNGQFIDLESSKRVSILGDP-WFDSRRSRSIFGSVLGALSDDQWKLIAKNIRNQQ 288 (292)
Q Consensus 216 ~~l~C~~~~~~p~~~~~W~~~g~~~~~~~~~~~~~~~~~-~~~~~~~~~l~i~~~~~~~~g~y~C~a~n~~g~~ 288 (292)
+.|+|.+..++|.+.|+|+++|+++.... .......++ .+. ....|.+......+...|+|.|.+.....
T Consensus 2 ~~LtC~a~g~~P~~~ItW~k~g~~l~~~~-~~~~~~~~~~t~~--~~s~l~~~~~~~d~g~~~tC~v~h~~l~~ 72 (83)
T cd07705 2 AKLRCTSSGSKPAANIKWRKGDQELEGAP-TSVLEDGNGKTFT--VSSSVEFQVTREDDGAEITCSVGHESLHD 72 (83)
T ss_pred EEEEEEecCccCCCEeEEEECCEECCCcc-eeEEECCCCCEEE--EEEEEEEEecchhCCCEEEEEEECcccCC
Confidence 68999997778999999999999885322 223333332 222 22344454555556679999999987654
No 237
>cd05714 Ig_CSPGs_LP Immunoglobulin (Ig)-like domain of chondroitin sulfate proteoglycans (CSPGs), human cartilage link protein (LP) and similar proteins. Ig_CSPGs_LP: immunoglobulin (Ig)-like domain similar to that found in chondroitin sulfate proteoglycans (CSPGs) and human cartilage link protein (LP). Included in this group are the CSPGs aggrecan, versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue.
Probab=98.80 E-value=1.2e-07 Score=61.64 Aligned_cols=81 Identities=22% Similarity=0.375 Sum_probs=53.5
Q ss_pred cCCcEEEEEEEeeeC------CCeeEEEECC-----e-EEeeccCC-------CcceeEE----eeecEEEEccCCCCCC
Q psy15128 50 LNGIASFQCVAEGSP------LPSVFWTQEG-----S-QVLMFPGN-------AYGHLHV----TQEGTLRIQGVQKEDA 106 (292)
Q Consensus 50 ~g~~~~l~C~~~~~~------~~~v~W~~~~-----~-~~~~~~~~-------~~~~~~~----~~~~~l~i~~~~~~d~ 106 (292)
.|++++|.|.+...+ ...+.|++.. . .+...... ...+... ..+..|+|.+++.+|+
T Consensus 1 ~G~~V~L~C~~~~~~~~~~~~~~~i~W~k~~~~~~~~~~v~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~~v~~sD~ 80 (106)
T cd05714 1 LGGNVTLPCRFHLEPALSAPHGPRIKWTKLESDGAKEVDVLVAIGGRVKVYGSGRVRVPLYPADPGDASLVITDLRLEDS 80 (106)
T ss_pred CCCCEEEeEEeECCcccCCCCCcEEEEEEeCCCCCceEEEEEEcCCEEEEcCCCceEEEeeCCCCCcceEEECCCCHHHC
Confidence 489999999987543 4589999862 1 11111111 1112221 1345899999999999
Q ss_pred eEEEEEEEeCCcCeeEEEEEEEEe
Q psy15128 107 GFFVCSALSVAGSTTVRAFLQVTS 130 (292)
Q Consensus 107 g~Y~C~~~~~~~~~~~~~~l~v~~ 130 (292)
|.|.|.+.+..+.....+.|.|.+
T Consensus 81 G~Y~C~v~~~~~~~~~~v~L~V~~ 104 (106)
T cd05714 81 GRYRCEVIDGIEDEQDTVELEVRG 104 (106)
T ss_pred EEEEEEEEcCCCceEEEEEEEEEE
Confidence 999999998766666666666653
No 238
>cd05884 Ig2_Necl-3 Second immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Ig2_Necl-3: second immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-3 has been shown to accumulate in tissues of the central and peripheral nervous system, where it is expressed in ependymal cells and myelinated axons. It is observed at the interface between the axon shaft and the myelin sheath. Ig domains are likely to participate in ligand binding and recognition.
Probab=98.80 E-value=2.7e-08 Score=61.08 Aligned_cols=71 Identities=14% Similarity=0.049 Sum_probs=45.0
Q ss_pred eEEEeeCCCCCCCCeEEEeEcCeEeccCCCceEEecCCCccccccccccccccccccccceeEEEEeeccccc
Q psy15128 216 ALLECGPPKGQPEPTLHWKKNGQFIDLESSKRVSILGDPWFDSRRSRSIFGSVLGALSDDQWKLIAKNIRNQQ 288 (292)
Q Consensus 216 ~~l~C~~~~~~p~~~~~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~a~n~~g~~ 288 (292)
++|.|.+..++|.+.++|++||+.+............++.+. ....|.+..-...+...|+|.|.|..-..
T Consensus 2 ~~LtC~a~gf~P~~~itW~kng~~l~~~~~~~~~~~~~~t~~--~~s~L~~~~~~~d~g~~ytC~v~h~~l~~ 72 (83)
T cd05884 2 MQLTCKTSGSKPAADIRWFKNDKEIKDVKYLKEEDANRKTFT--VSSTLDFRVDRSDDGVAIICRVDHESLNA 72 (83)
T ss_pred EEEEEEeCCccCCCEEEEEECCEECcCceeeEeeCCCCCEEE--EEEEEEEEcccccCCCEEEEEEechhcCC
Confidence 689999977799999999999999853221122222222222 22344444333444559999999887654
No 239
>cd05877 Ig_LP_like Immunoglobulin (Ig)-like domain of human cartilage link protein (LP). Ig_LP_like: immunoglobulin (Ig)-like domain similar to that that found in human cartilage link protein (LP). In cartilage, chondroitin-keratan sulfate proteoglycan (CSPG), aggrecan, forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes.
Probab=98.77 E-value=2.5e-07 Score=60.26 Aligned_cols=81 Identities=23% Similarity=0.369 Sum_probs=54.2
Q ss_pred cCCcEEEEEEEeeeC------CCeeEEEECCe------EEeecc-------CCCcceeEEe----eecEEEEccCCCCCC
Q psy15128 50 LNGIASFQCVAEGSP------LPSVFWTQEGS------QVLMFP-------GNAYGHLHVT----QEGTLRIQGVQKEDA 106 (292)
Q Consensus 50 ~g~~~~l~C~~~~~~------~~~v~W~~~~~------~~~~~~-------~~~~~~~~~~----~~~~l~i~~~~~~d~ 106 (292)
.|++++|.|.+...| ...+.|+|... .+.... ..-..+..+. .+..|.|.+++.+|+
T Consensus 1 ~G~~vtL~C~~~~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~sL~I~~v~~~Ds 80 (106)
T cd05877 1 RGGNVTLPCRYHYEPELSAPRKIRVKWTKLESDYLKEEDVLVAIGTRHKSYGSYQGRVFLRRAHDLDASLVITDLRLEDY 80 (106)
T ss_pred CCCcEEEEeEeECCCcCCCCccceEEEEEecCCCCeeEEEEEEcCcEEEeccCccCcEEecCCCCCcEEEEEccCChHHC
Confidence 489999999886542 34699998531 111111 1111333332 234799999999999
Q ss_pred eEEEEEEEeCCcCeeEEEEEEEEe
Q psy15128 107 GFFVCSALSVAGSTTVRAFLQVTS 130 (292)
Q Consensus 107 g~Y~C~~~~~~~~~~~~~~l~v~~ 130 (292)
|.|.|.+.+..+.....+.|.|.+
T Consensus 81 G~Y~C~v~~~~~~~~~~~~l~v~~ 104 (106)
T cd05877 81 GRYRCEVIDGLEDESVVVALRLRG 104 (106)
T ss_pred EEEEEEEEecccceEEEEEEEEEE
Confidence 999999998777777777776653
No 240
>cd05755 Ig2_ICAM-1_like Second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54) and similar proteins. Ig2_ ICAM-1_like: domain similar to the second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54). During the inflammation process, these molecules recruit leukocytes onto the vascular endothelium before extravasation to the injured tissues. ICAM-1 may be involved in organ targeted tumor metastasis. The interaction of ICAM-1 with leukocyte function-associated antigen-1 (LFA-1) plays a part in leukocyte-endothelial cell recognition. This group also contains ICAM-2, which also interacts with LFA-1. Transmigration of immature dendritic cells across resting endothelium is dependent on the interaction of ICAM-2 with, yet unidentified, ligand(s) on the dendritic cells. ICAM-1 has five Ig-like domains and ICAM-2 has two. ICAM-1 may also act as host receptor for viruses and parasites.
Probab=98.77 E-value=3.7e-08 Score=62.12 Aligned_cols=76 Identities=8% Similarity=0.053 Sum_probs=50.7
Q ss_pred ceEEeCCCceEEEeeCCCCCCCCe--EEEeEcCeEeccCCCceEEecCCCccccccccccccccccccccc-eeEEEEee
Q psy15128 207 DTRVASGETALLECGPPKGQPEPT--LHWKKNGQFIDLESSKRVSILGDPWFDSRRSRSIFGSVLGALSDD-QWKLIAKN 283 (292)
Q Consensus 207 ~~~~~~g~~~~l~C~~~~~~p~~~--~~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g-~y~C~a~n 283 (292)
...+.+|+.++|+|.+..+.|.+. |.|+++++.+.. ........... .....+.+ .+..+|.| .|+|.|.+
T Consensus 10 p~~~~eG~~~tL~C~v~g~~P~a~L~i~W~rG~~~l~~---~~~~~~~~~~~--~~~stlt~-~~~r~D~g~~~sC~A~l 83 (100)
T cd05755 10 PSWQPVGKNYTLQCDVPGVAPRQNLTVVLLRGNETLSR---QPFGDNTKSPV--NAPATITI-TVDREDHGANFSCETEL 83 (100)
T ss_pred CCcccCCCcEEEEEEEcCcCCCCcEEEEEeeCCEEccc---ceeccccCCCc--eeEEEEEE-ecchhhCCcEEEEEEEe
Confidence 445789999999999977889886 799999998842 11111111111 12223444 35566777 99999999
Q ss_pred ccccc
Q psy15128 284 IRNQQ 288 (292)
Q Consensus 284 ~~g~~ 288 (292)
.++..
T Consensus 84 ~l~~~ 88 (100)
T cd05755 84 DLRPE 88 (100)
T ss_pred ccCcc
Confidence 88764
No 241
>cd05878 Ig_Aggrecan_like Immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG). Ig_Aggrecan_like: immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG)s. Included in this group are the Ig domains of other CSPGs: versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substi
Probab=98.76 E-value=2.9e-07 Score=60.04 Aligned_cols=81 Identities=20% Similarity=0.370 Sum_probs=53.1
Q ss_pred cCCcEEEEEEEeeeC----------CCeeEEEECC--eEEee--c-------cCCCcceeEEe------eecEEEEccCC
Q psy15128 50 LNGIASFQCVAEGSP----------LPSVFWTQEG--SQVLM--F-------PGNAYGHLHVT------QEGTLRIQGVQ 102 (292)
Q Consensus 50 ~g~~~~l~C~~~~~~----------~~~v~W~~~~--~~~~~--~-------~~~~~~~~~~~------~~~~l~i~~~~ 102 (292)
.|++++|.|.+...+ ...+.|+|.. ..... . ...-.+|..+. ....|+|.+++
T Consensus 1 ~G~~V~LpC~~~~~~~~~~~~~~~~~~~i~W~k~~~~~~~~v~~~~~~~~~~~~~f~gR~~~~~~~~~~~~asL~I~~l~ 80 (110)
T cd05878 1 LSSSVLLPCYFTLPPALPPPSNAPESPRIKWTKLSGQKEVTVLVAQDGVVKVGQEYQGRVSLPNYPENRGDASLEISRLR 80 (110)
T ss_pred CCCCEEEeeEeeCCccccccccCCCCCEEEEEEecCCCcEEEEEEECCEEEecccccCeEEeccCCCCCCcEEEEECCCC
Confidence 488999999986533 2579999852 21110 0 11111344332 33579999999
Q ss_pred CCCCeEEEEEEEeCCcCeeEEEEEEEEe
Q psy15128 103 KEDAGFFVCSALSVAGSTTVRAFLQVTS 130 (292)
Q Consensus 103 ~~d~g~Y~C~~~~~~~~~~~~~~l~v~~ 130 (292)
.+|+|.|.|.+..........+.|.|..
T Consensus 81 ~sD~G~Y~C~v~~~~~~~~~~v~l~V~g 108 (110)
T cd05878 81 SSDSGVYRCEVMHGIEDEQDTVPLEVTG 108 (110)
T ss_pred hhhCEEEEEEEEeCCCcceEEEEEEEEE
Confidence 9999999999987655566666666643
No 242
>cd05713 Ig_MOG_like Immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG). Ig_MOG_like: immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG). MOG, a minor component of the myelin sheath, is an important CNS-specific autoantigen, linked to the pathogenesis of multiple sclerosis (MS) and experimental autoimmune encephalomyelitis (EAE). It is a transmembrane protein having an extracellular Ig domain. MOG is expressed in the CNS on the outermost lamellae of the myelin sheath, and on the surface of oligodendrocytes, and may participate in the completion, compaction, and/or maintenance of myelin. This group also includes butyrophilin (BTN). BTN is the most abundant protein in bovine milk-fat globule membrane (MFGM).
Probab=98.76 E-value=1.3e-07 Score=60.85 Aligned_cols=77 Identities=21% Similarity=0.271 Sum_probs=47.7
Q ss_pred CCcEEEEEEEeeeC---CCeeEEEECCe--EEeecc-C---------CCcceeEEe------eecEEEEccCCCCCCeEE
Q psy15128 51 NGIASFQCVAEGSP---LPSVFWTQEGS--QVLMFP-G---------NAYGHLHVT------QEGTLRIQGVQKEDAGFF 109 (292)
Q Consensus 51 g~~~~l~C~~~~~~---~~~v~W~~~~~--~~~~~~-~---------~~~~~~~~~------~~~~l~i~~~~~~d~g~Y 109 (292)
|++++|.|.+.... ...+.|++... .+.... + .-..+..+. ....|+|.+++.+|+|.|
T Consensus 1 G~~v~L~C~~~~~~~~~~~~v~W~k~~~~~~v~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y 80 (100)
T cd05713 1 GEDAELPCHLSPKMSAEHMEVRWFRSQFSPAVHLYRDGQDQYGEQMPEYRGRTELLKDAIAEGSVALRIHNVRASDEGLY 80 (100)
T ss_pred CCcEEEEeEEcCCCCCCeeEEEEEECCCceeEEEEcCCcccccccCccccceEEeecccccCCcEEEEEEcCChhhCEEE
Confidence 68899999985321 23688988542 111111 0 011233332 235799999999999999
Q ss_pred EEEEEeCCcCeeEEEEEE
Q psy15128 110 VCSALSVAGSTTVRAFLQ 127 (292)
Q Consensus 110 ~C~~~~~~~~~~~~~~l~ 127 (292)
+|.+.+..+.....+.|.
T Consensus 81 ~C~v~~~~~~~~~~i~l~ 98 (100)
T cd05713 81 TCFFQSDGFYEEATVELK 98 (100)
T ss_pred EEEEecCCcEEEEEEEEE
Confidence 999998655544444443
No 243
>cd05755 Ig2_ICAM-1_like Second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54) and similar proteins. Ig2_ ICAM-1_like: domain similar to the second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54). During the inflammation process, these molecules recruit leukocytes onto the vascular endothelium before extravasation to the injured tissues. ICAM-1 may be involved in organ targeted tumor metastasis. The interaction of ICAM-1 with leukocyte function-associated antigen-1 (LFA-1) plays a part in leukocyte-endothelial cell recognition. This group also contains ICAM-2, which also interacts with LFA-1. Transmigration of immature dendritic cells across resting endothelium is dependent on the interaction of ICAM-2 with, yet unidentified, ligand(s) on the dendritic cells. ICAM-1 has five Ig-like domains and ICAM-2 has two. ICAM-1 may also act as host receptor for viruses and parasites.
Probab=98.75 E-value=1.2e-07 Score=59.80 Aligned_cols=80 Identities=15% Similarity=0.157 Sum_probs=52.0
Q ss_pred EEeCCCccEEecCCcEEEEEEEee-eCCCe--eEEEECCeEEeeccCCCcceeEEeeecEEEEccCCCCCCeEEEEEEEe
Q psy15128 39 FVVRPQDQKVGLNGIASFQCVAEG-SPLPS--VFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALS 115 (292)
Q Consensus 39 ~~~~~~~~~~~~g~~~~l~C~~~~-~~~~~--v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~ 115 (292)
+.+.+.+..+.+|+.++|.|.+.+ .|.+. |.||+++..+..................|.+.....+|...|+|+|.+
T Consensus 4 V~l~~~p~~~~eG~~~tL~C~v~g~~P~a~L~i~W~rG~~~l~~~~~~~~~~~~~~~~stlt~~~~r~D~g~~~sC~A~l 83 (100)
T cd05755 4 VELSPLPSWQPVGKNYTLQCDVPGVAPRQNLTVVLLRGNETLSRQPFGDNTKSPVNAPATITITVDREDHGANFSCETEL 83 (100)
T ss_pred EEEecCCCcccCCCcEEEEEEEcCcCCCCcEEEEEeeCCEEcccceeccccCCCceeEEEEEEecchhhCCcEEEEEEEe
Confidence 344555556789999999999977 57665 799999987742211110011122344677776666666699999986
Q ss_pred CCc
Q psy15128 116 VAG 118 (292)
Q Consensus 116 ~~~ 118 (292)
...
T Consensus 84 ~l~ 86 (100)
T cd05755 84 DLR 86 (100)
T ss_pred ccC
Confidence 544
No 244
>cd05751 Ig1_LILRB1_like First immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1) and similar proteins. Ig1_LILRB1_like: domain similar to the first immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1). This group includes, LILRA5 (LIR9), an activating natural cytotoxicity receptor NKp46, and the immune-type receptor glycoprotein VI (GPVI). LILRs are a family of immunoreceptors expressed on expressed on T and B cells, on monocytes, dendritic cells, and subgroups of natural killer (NK) cells. The human LILR family contains nine proteins (LILRA1-3,and 5, and LILRB1-5). From functional assays, and as the cytoplasmic domains of various LILRs, for example LILRB1 (LIR-1), LILRB2 (LIR-2), and LILRB3 (LIR-3) contain immunoreceptor tyrosine-based inhibitory motifs (ITIMs) it is thought that LIR proteins are inhibitory receptors. Of the eight LIR family proteins, only LIR-1(LILRB1), and LIR-2 (LILRB2),
Probab=98.75 E-value=2e-08 Score=63.18 Aligned_cols=67 Identities=9% Similarity=0.144 Sum_probs=48.4
Q ss_pred ceEEeCCCceEEEeeCCCCCCCCeEEEeEcCeEeccCCCceEEecCCCccccccccccccccccccccceeEEEEeecc
Q psy15128 207 DTRVASGETALLECGPPKGQPEPTLHWKKNGQFIDLESSKRVSILGDPWFDSRRSRSIFGSVLGALSDDQWKLIAKNIR 285 (292)
Q Consensus 207 ~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~a~n~~ 285 (292)
...+..|+.|+|.|.. ..+...+.|+++|...... . .. . ......+.+..+...|+|.|+|.+.|..
T Consensus 10 ~~vV~~G~~VtL~C~~--~~~~~~f~l~k~g~~~~~~---~--~~-~----~~~~~~f~i~~v~~~~~G~Y~C~~~~~~ 76 (91)
T cd05751 10 SSVVPLGKPVTLRCQG--PYGAVEYRLYREGSTFAVK---K--PP-E----PQNKAKFFIPSMKREHAGRYRCYYRSGV 76 (91)
T ss_pred CCccCCCCcEEEEEec--CCCCCEEEEEECCCCcccc---c--cC-C----CceeEEEEccCCChhHCEEEEEEEECCC
Confidence 3467899999999985 4677899999998754311 0 00 0 1122257788999999999999999863
No 245
>cd05881 Ig1_Necl-2 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Ig1_Necl-2: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-2, Necl-2 (also known as cell adhesion molecule 1 (CADM1), SynCAM1, IGSF4A, Tslc1, sgIGSF, and RA175). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-2 is expressed in a wide variety of tissues, and is a
Probab=98.74 E-value=3.5e-08 Score=61.88 Aligned_cols=74 Identities=12% Similarity=0.133 Sum_probs=52.3
Q ss_pred cceEEeCCCceEEEeeCCCCCCCCeEEEeEcCeEec------cCCCceEEecCCCccccccccccccccccccccceeEE
Q psy15128 206 KDTRVASGETALLECGPPKGQPEPTLHWKKNGQFID------LESSKRVSILGDPWFDSRRSRSIFGSVLGALSDDQWKL 279 (292)
Q Consensus 206 ~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~g~~~~------~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C 279 (292)
+++++.+|+++.|+|.+ .+.....+.|++.+..+. ...+.|+...... .....|.|..+..+|+|.|.|
T Consensus 5 ~nvtv~~G~ta~L~C~v-~~~~~~~v~w~~~~~~~i~~~~~~~~~d~Rf~~~~~~----~~~~tL~I~~vq~~D~G~Y~C 79 (95)
T cd05881 5 EDVTVVEGEVAIISCRV-KNNDDSVIQLLNPNRQTIYFRDVRPLKDSRFQLVNFS----SNELRVSLSNVSLSDEGRYFC 79 (95)
T ss_pred CceEEcCCCcEEEEEEE-ccCCccEEEEEecCCcEEEecCccccCCcCEEEEeCC----CCEEEEEECcCCcccCEEEEE
Confidence 46788999999999998 666667789988765432 1233444433211 123358999999999999999
Q ss_pred EEeec
Q psy15128 280 IAKNI 284 (292)
Q Consensus 280 ~a~n~ 284 (292)
.+...
T Consensus 80 qv~t~ 84 (95)
T cd05881 80 QLYTD 84 (95)
T ss_pred EEEcc
Confidence 98754
No 246
>cd05872 Ig_Sema4B_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4B. Ig_Sema4B_like; Immunoglobulin (Ig)-like domain of Sema4B_like. Sema4B is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4B has extracellular Sema and Ig domains, a transmembrane domain and a short cytoplasmic domain. Sema4B has been shown to preferentially regulate the development of the postsynaptic specialization at the glutamatergic synapses. This cytoplasmic domain includes a PDZ-binding motif upon which the synaptic localization of Sem4B is dependent. Sema4B is a ligand of CLCP1, CLCP1 was identified in an expression profiling analysis, which compared a highly metastic lung cancer subline with its low metastic parental line. Sema4B was shown to promote CLCP1 endocytosis, and their interaction is a potential target for therapeutic intervention of metastasis.
Probab=98.73 E-value=1.4e-07 Score=57.80 Aligned_cols=76 Identities=18% Similarity=0.252 Sum_probs=53.5
Q ss_pred ccEEecCCcEEEEEEEeeeCCCeeEEEECCeEEeeccCCCcceeEEeeecEEEEccCCCCCCeEEEEEEEeCCcCeeEEE
Q psy15128 45 DQKVGLNGIASFQCVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRA 124 (292)
Q Consensus 45 ~~~~~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~~~~~~~~ 124 (292)
...+.+|+++.|.|...+. .+.+.|++++..+.. ..+.... ...|.|..++.+|+|.|.|.+.- .|....-+
T Consensus 5 ~~tv~~g~~v~L~C~~~s~-~A~v~W~~ng~~l~~-----~~r~~~~-~~GLlI~~~~~~dsG~Y~C~s~E-~gf~~~~~ 76 (85)
T cd05872 5 NRTVAPGADVVLPCQLRSN-LASPVWLFNGTPLNA-----QFSYRVG-TDGLLILVTSPEHSGTYRCYSEE-EGFQQLVA 76 (85)
T ss_pred EEEEecCCCEEEECCCCCC-CccEEEEECCcccCC-----CcceEEe-CCCCEEEECCHhhCEEEEEEEec-CCCeEEEE
Confidence 4678899999999998764 569999999987631 1223323 33577999999999999999863 24434333
Q ss_pred EEEE
Q psy15128 125 FLQV 128 (292)
Q Consensus 125 ~l~v 128 (292)
.+.+
T Consensus 77 ~y~l 80 (85)
T cd05872 77 SYSL 80 (85)
T ss_pred EEEE
Confidence 3333
No 247
>cd04983 IgV_TCR_alpha_like Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) alpha chain and similar proteins. IgV_TCR_alpha: immunoglobulin (Ig) variable domain of the alpha chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group represents the variable domain of the alpha chain of TCRs and also includes the variable domain of delta chains of TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide.
Probab=98.72 E-value=1.8e-07 Score=61.27 Aligned_cols=76 Identities=18% Similarity=0.382 Sum_probs=52.6
Q ss_pred CCCccEEecCCcEEEEEEEeeeCCCeeEEEECCe---E--EeeccC----CCcceeEEe-----eecEEEEccCCCCCCe
Q psy15128 42 RPQDQKVGLNGIASFQCVAEGSPLPSVFWTQEGS---Q--VLMFPG----NAYGHLHVT-----QEGTLRIQGVQKEDAG 107 (292)
Q Consensus 42 ~~~~~~~~~g~~~~l~C~~~~~~~~~v~W~~~~~---~--~~~~~~----~~~~~~~~~-----~~~~l~i~~~~~~d~g 107 (292)
.+..+.+.+|++++|.|.+.+.+...+.|++... . +..... ....++... ....|.|.+++.+|+|
T Consensus 4 ~~~~v~~~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~~~~~DsG 83 (109)
T cd04983 4 SPQSLSVQEGENVTLNCNYSTSTFYYLFWYRQYPGQGPQFLIYISSNGEEKEKGRFSATLDKSRKSSSLHISAAQLSDSA 83 (109)
T ss_pred cCCceEEcCCCCEEEEEEECCCCccEEEEEEECCCCCeEEEEEEecCCCcccCCcEEEEEcccCCEEEEEECCCCHHHCE
Confidence 4556778899999999999876777999998532 1 111100 122333332 2348999999999999
Q ss_pred EEEEEEEeCC
Q psy15128 108 FFVCSALSVA 117 (292)
Q Consensus 108 ~Y~C~~~~~~ 117 (292)
.|.|.+.+..
T Consensus 84 ~Y~C~~~~~~ 93 (109)
T cd04983 84 VYFCALSESG 93 (109)
T ss_pred EEEEEEecCC
Confidence 9999998643
No 248
>cd00098 IgC Immunoglobulin Constant domain. IgC: Immunoglobulin constant domain (IgC). Members of the IgC family are components of immunoglobulin, T-cell receptors, CD1 cell surface glycoproteins, secretory glycoproteins A/C, and Major Histocompatibility Complex (MHC) class I/II molecules. In immunoglobulins, each chain is composed of one variable domain (IgV) and one or more IgC domains. These names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. The IgV domain is responsible for antigen binding, and the IgC domain is involved in oligomerization and molecular interactions.
Probab=98.70 E-value=3e-08 Score=63.24 Aligned_cols=74 Identities=20% Similarity=0.206 Sum_probs=49.9
Q ss_pred eCCCceEEEeeCCCCC-CC-CeEEEeEcCeEeccCCC-ceEEecCCCccccccccccccccccccccceeEEEEeecccc
Q psy15128 211 ASGETALLECGPPKGQ-PE-PTLHWKKNGQFIDLESS-KRVSILGDPWFDSRRSRSIFGSVLGALSDDQWKLIAKNIRNQ 287 (292)
Q Consensus 211 ~~g~~~~l~C~~~~~~-p~-~~~~W~~~g~~~~~~~~-~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~a~n~~g~ 287 (292)
..|+.+.|.|.+ .|+ |. +.++|+++|..+..... .......++.+.. ...|.+......+.+.|+|.|++....
T Consensus 11 ~~~~~~~L~C~a-~g~~P~~~~i~W~~~g~~~~~~~~~~~~~~~~~gt~~~--~s~l~v~~~~~~~~~~y~C~v~h~~~~ 87 (95)
T cd00098 11 LLGGSVTLTCLA-TGFYPPDITVTWLKNGKELTSGVTTTPPVPNSDGTYSV--SSQLTVSPSDWNSGDTYTCVVTHESLP 87 (95)
T ss_pred HcCCCeEEEEEE-eeEECCCcEEEEEECCEECCCceeccccccCCCCCEEE--EEEEEECHHHhCCCCCEEEEEEeCCCC
Confidence 368899999999 554 64 68999999999853332 2233334443332 234555555556899999999998763
No 249
>cd05775 Ig_SLAM-CD84_like_N N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like. Ig_SLAM-CD84_like_N: The N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like. The SLAM family is a group of immune-cell specific receptors that can regulate both adaptive and innate immune responses. Members of this group include proteins such as CD84, SLAM (CD150), Ly-9 (CD229), NTB-A (ly-108, SLAM6), 19A (CRACC), and SLAMF9. The genes coding for the SLAM family are nested on chromosome 1, in humans at 1q23, and in mice at 1H2. The SLAM family is a subset of the CD2 family, which also includes CD2 and CD58 located on chromosome 1 at 1p13 in humans. In mice, CD2 is located on chromosome 3, and there is no CD58 homolog. The SLAM family proteins are organized as an extracellular domain with either two or four Ig-like domains, a single transmembrane segment, and a cytoplasmic region
Probab=98.70 E-value=1.6e-07 Score=59.78 Aligned_cols=71 Identities=21% Similarity=0.358 Sum_probs=48.4
Q ss_pred ecCCcEEEEEEEee-eCCCeeEEEECCeEEeeccC------------CCcceeEEee-ecEEEEccCCCCCCeEEEEEEE
Q psy15128 49 GLNGIASFQCVAEG-SPLPSVFWTQEGSQVLMFPG------------NAYGHLHVTQ-EGTLRIQGVQKEDAGFFVCSAL 114 (292)
Q Consensus 49 ~~g~~~~l~C~~~~-~~~~~v~W~~~~~~~~~~~~------------~~~~~~~~~~-~~~l~i~~~~~~d~g~Y~C~~~ 114 (292)
..|++|+|.|.... .....+.|++....+..... .-..+..+.. +..|+|.+++.+|+|.|.|.+.
T Consensus 2 ~~G~sVtL~c~~~~~~~~~~v~W~~~~~~~i~~~~~~~~~~~~~~~~~f~~R~~~~~~~~sL~I~~~~~~DsG~Y~c~v~ 81 (97)
T cd05775 2 ILGGSVTLPLNIPDGTEIESITWSFNTSLAIITPGEETAPEIIVTDPSYKERVNFSQNDYSLQISNLKMEDAGSYRAEIN 81 (97)
T ss_pred ccCCeEEEeCCCCCCcEEEEEEEecCCEeEEEecCCCCCCccEEeCCCceeeEEecCCceeEEECCCchHHCEEEEEEEE
Confidence 36999999998754 34457999987543332211 1012333333 3689999999999999999998
Q ss_pred eCCcC
Q psy15128 115 SVAGS 119 (292)
Q Consensus 115 ~~~~~ 119 (292)
...+.
T Consensus 82 ~~~~~ 86 (97)
T cd05775 82 TKNGV 86 (97)
T ss_pred cCCCC
Confidence 76543
No 250
>cd05899 IgV_TCR_beta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) bet a chain. IgV_TCR_beta: immunoglobulin (Ig) variable domain of the beta chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group includes the variable domain of the alpha chain of alpha/beta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide.
Probab=98.70 E-value=1.8e-07 Score=61.34 Aligned_cols=75 Identities=13% Similarity=0.352 Sum_probs=51.1
Q ss_pred eCCCccEEecCCcEEEEEEEeeeCCCeeEEEECCe--EEe---ecc--------CCCcceeEEe----eecEEEEccCCC
Q psy15128 41 VRPQDQKVGLNGIASFQCVAEGSPLPSVFWTQEGS--QVL---MFP--------GNAYGHLHVT----QEGTLRIQGVQK 103 (292)
Q Consensus 41 ~~~~~~~~~~g~~~~l~C~~~~~~~~~v~W~~~~~--~~~---~~~--------~~~~~~~~~~----~~~~l~i~~~~~ 103 (292)
..|....+.+|++++|.|.+.+ +...+.|||... ... ... .....++... ....|.|.+++.
T Consensus 3 Q~p~~~~v~~G~~v~l~C~~~~-~~~~v~Wykq~~g~~~~~l~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~~~~ 81 (110)
T cd05899 3 QSPRYLIKGRGQSVTLRCSQTS-GHDNMYWYRQDPGKGLQLLFYSNGGSLNEEEGDPKDRFSASRPSLTRSSLTIKSAEP 81 (110)
T ss_pred ECCCceEEcCCCcEEEEEEECC-CCCEEEEEEECCCCCcEEEEEEcCCCceEecCccCCceEEECcCCCccEEEECCCCh
Confidence 3456778899999999999987 667899998532 111 000 1111222221 234799999999
Q ss_pred CCCeEEEEEEEeC
Q psy15128 104 EDAGFFVCSALSV 116 (292)
Q Consensus 104 ~d~g~Y~C~~~~~ 116 (292)
+|+|.|.|.+.+.
T Consensus 82 ~Dsg~Y~Ca~~~~ 94 (110)
T cd05899 82 EDSAVYLCASSLG 94 (110)
T ss_pred hhCEEEEEEeeCC
Confidence 9999999998754
No 251
>cd05718 Ig1_PVR_like First immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155) and similar proteins. Ig1_PVR_like: domain similar to the first immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155). Poliovirus (PV) binds to its cellular receptor (PVR/CD155) to initiate infection. CD155 is a membrane-anchored, single-span glycoprotein; its extracellular region has three Ig-like domains. There are four different isotypes of CD155 (referred to as alpha, beta, gamma, and delta), that result from alternate splicing of the CD155 mRNA, and have identical extracellular domains. CD155-beta and - gamma, are secreted, CD155-alpha and delta are membrane-bound and function as PV receptors. The virus recognition site is contained in the amino-terminal domain, D1. Having the virus attachment site on the receptor distal from the plasma membrane, may be important for successful initiation of infection of cells by the virus. CD155 binds in the poliovirus "c
Probab=98.66 E-value=4e-07 Score=58.35 Aligned_cols=77 Identities=19% Similarity=0.408 Sum_probs=49.0
Q ss_pred CcEEEEEEEeeeC---CCeeEEEECCeE----Eeec--------cCCCcceeEEe----eecEEEEccCCCCCCeEEEEE
Q psy15128 52 GIASFQCVAEGSP---LPSVFWTQEGSQ----VLMF--------PGNAYGHLHVT----QEGTLRIQGVQKEDAGFFVCS 112 (292)
Q Consensus 52 ~~~~l~C~~~~~~---~~~v~W~~~~~~----~~~~--------~~~~~~~~~~~----~~~~l~i~~~~~~d~g~Y~C~ 112 (292)
++++|.|.+...+ ...+.|+|.... +... ......+..+. .+..|+|.+++.+|+|.|.|.
T Consensus 1 ~~v~L~C~~~~~~~~~~~~v~W~k~~~~~~~~i~~~~~~~~~~~~~~~~~R~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~ 80 (98)
T cd05718 1 ESVTLECSFPVPGPVQITQVTWMKITGGSKQNIAVFHPQYGISIPPSYEGRVSFLNSSLEDATISISNLRLEDEGNYICE 80 (98)
T ss_pred CCEEEEeEeeCCCCceEEEEEEeeECCCCCEEEEEEecCCCcccCcCcCceEEEeCCCCCceEEEEccCCcccCEEEEEE
Confidence 4789999987643 337999995431 1111 01112233322 345899999999999999999
Q ss_pred EEe-CCcCeeEEEEEEE
Q psy15128 113 ALS-VAGSTTVRAFLQV 128 (292)
Q Consensus 113 ~~~-~~~~~~~~~~l~v 128 (292)
+.. ..|.......|.|
T Consensus 81 v~~~~~g~~~~~~~l~V 97 (98)
T cd05718 81 FATFPQGNRQKVTTLTV 97 (98)
T ss_pred EEeCCCCcEEEEEEEEe
Confidence 875 4555555555544
No 252
>cd05883 Ig2_Necl-2 Second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Ig2_Necl-2: second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Nectin-like molecules (Necls) have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is expressed in a wide variety of tissues, and is a putative tumour suppressor gene, which is downregulated in aggressive neuroblastoma. Ig domains are likely to participate in ligand binding and recognition.
Probab=98.65 E-value=4.6e-07 Score=54.87 Aligned_cols=65 Identities=14% Similarity=0.170 Sum_probs=45.1
Q ss_pred EEEEEEEee-eCCCeeEEEECCeEEeeccCC-CcceeEEeeecEEEEccCCCCCCeEEEEEEEeCCc
Q psy15128 54 ASFQCVAEG-SPLPSVFWTQEGSQVLMFPGN-AYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAG 118 (292)
Q Consensus 54 ~~l~C~~~~-~~~~~v~W~~~~~~~~~~~~~-~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~~ 118 (292)
+.|.|.+.| .|.+.|.|++++..+...... ..........+.|.+..-..+|...|+|++.|...
T Consensus 2 ~~L~C~s~gSkP~A~I~W~k~~~~l~~~~~~~~~~~~~~t~~S~L~~~p~~eDdG~~~~C~a~~~~l 68 (82)
T cd05883 2 IELNCTAMASKPAATIRWFKGNKELTGKSTVEETWSRMFTVTSQLMLKVTKEDDGVPVICLVDHPAV 68 (82)
T ss_pred EEEEEEecCCCCCCEEEEEECCEECcCcccceeccCCCcEEEEEEEEECchhhCCCEEEEEEcCccc
Confidence 689998876 588899999999877422110 01111233455788887777888899999988654
No 253
>cd05902 Ig_Neurocan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan. Ig_Neurocan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Unlike aggrecan which is widely distributed in connective tissue and extracellular matrices, neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many differen
Probab=98.64 E-value=6.7e-07 Score=57.93 Aligned_cols=79 Identities=20% Similarity=0.314 Sum_probs=52.0
Q ss_pred CCcEEEEEEEeeeC-------CCeeEEEECC-----eEE--eecc-------CCCcceeEEe------eecEEEEccCCC
Q psy15128 51 NGIASFQCVAEGSP-------LPSVFWTQEG-----SQV--LMFP-------GNAYGHLHVT------QEGTLRIQGVQK 103 (292)
Q Consensus 51 g~~~~l~C~~~~~~-------~~~v~W~~~~-----~~~--~~~~-------~~~~~~~~~~------~~~~l~i~~~~~ 103 (292)
|++++|.|.+.-.| .+.+.|.+.. ... .... ..-.++..+. .+..|.|.+++.
T Consensus 2 ~~~v~LpC~~~~~p~~~~~~~~~~I~W~k~~~~~~~~~~~v~v~~~~~~~~~~~y~gRvsl~~~~~~~~~asL~i~nv~~ 81 (110)
T cd05902 2 SSSVLLPCVFTLPPSASSPPEGPRIKWTKLRPASGQKQRPVLVARDNVVRVAKAFQGRVSLPGYPKNRYNASLVLSRLRY 81 (110)
T ss_pred CCcEEEeeEEEcCccccCCCCCCEEEEEEeCCCCCceEEEEEECCCCcEEEchhcccEEEeecCCCCCceEEEEECCCCH
Confidence 78899999975322 3589998751 111 1111 1222444443 245899999999
Q ss_pred CCCeEEEEEEEeCCcCeeEEEEEEEE
Q psy15128 104 EDAGFFVCSALSVAGSTTVRAFLQVT 129 (292)
Q Consensus 104 ~d~g~Y~C~~~~~~~~~~~~~~l~v~ 129 (292)
+|+|.|.|.+..........+.|.|.
T Consensus 82 ~D~G~Y~C~v~~g~~~~~~~v~L~V~ 107 (110)
T cd05902 82 SDSGTYRCEVVLGINDEQDTVPLEVT 107 (110)
T ss_pred HHCEEEEEEEEECCcccEEEEEEEEE
Confidence 99999999998865555666666654
No 254
>cd04983 IgV_TCR_alpha_like Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) alpha chain and similar proteins. IgV_TCR_alpha: immunoglobulin (Ig) variable domain of the alpha chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group represents the variable domain of the alpha chain of TCRs and also includes the variable domain of delta chains of TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide.
Probab=98.64 E-value=1.4e-07 Score=61.78 Aligned_cols=78 Identities=22% Similarity=0.213 Sum_probs=52.1
Q ss_pred CcceEEeCCCceEEEeeCCCCCCCCeEEEeEcCe---E---ecc------CCCceEEecCCCcccccccccccccccccc
Q psy15128 205 PKDTRVASGETALLECGPPKGQPEPTLHWKKNGQ---F---IDL------ESSKRVSILGDPWFDSRRSRSIFGSVLGAL 272 (292)
Q Consensus 205 ~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~g~---~---~~~------~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~ 272 (292)
+....+.+|++++|.|.+ .+.+...+.|++... + +.. ....++.+.... ......|.|..++.+
T Consensus 5 ~~~v~~~~G~~v~L~C~~-~~~~~~~v~W~k~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~---~~~~~~L~I~~~~~~ 80 (109)
T cd04983 5 PQSLSVQEGENVTLNCNY-STSTFYYLFWYRQYPGQGPQFLIYISSNGEEKEKGRFSATLDK---SRKSSSLHISAAQLS 80 (109)
T ss_pred CCceEEcCCCCEEEEEEE-CCCCccEEEEEEECCCCCeEEEEEEecCCCcccCCcEEEEEcc---cCCEEEEEECCCCHH
Confidence 456789999999999998 555777999998431 1 100 011222221111 012346999999999
Q ss_pred ccceeEEEEeeccc
Q psy15128 273 SDDQWKLIAKNIRN 286 (292)
Q Consensus 273 ~~g~y~C~a~n~~g 286 (292)
|+|.|.|.+.+..+
T Consensus 81 DsG~Y~C~~~~~~~ 94 (109)
T cd04983 81 DSAVYFCALSESGG 94 (109)
T ss_pred HCEEEEEEEecCCC
Confidence 99999999998654
No 255
>cd05899 IgV_TCR_beta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) bet a chain. IgV_TCR_beta: immunoglobulin (Ig) variable domain of the beta chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group includes the variable domain of the alpha chain of alpha/beta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide.
Probab=98.63 E-value=2e-07 Score=61.10 Aligned_cols=75 Identities=12% Similarity=0.105 Sum_probs=50.0
Q ss_pred CcceEEeCCCceEEEeeCCCCCCCCeEEEeEcC--eEe---c-cC----------CCceEEecCCCcccccccccccccc
Q psy15128 205 PKDTRVASGETALLECGPPKGQPEPTLHWKKNG--QFI---D-LE----------SSKRVSILGDPWFDSRRSRSIFGSV 268 (292)
Q Consensus 205 ~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~g--~~~---~-~~----------~~~~~~~~~~~~~~~~~~~~l~i~~ 268 (292)
+....+.+|++++|.|.+ .+ +...+.|+|.. +.. . .. ...++..... ......|.|..
T Consensus 5 p~~~~v~~G~~v~l~C~~-~~-~~~~v~Wykq~~g~~~~~l~~~~~~~~~~~~~~~~~r~~~~~~----~~~~~~L~I~~ 78 (110)
T cd05899 5 PRYLIKGRGQSVTLRCSQ-TS-GHDNMYWYRQDPGKGLQLLFYSNGGSLNEEEGDPKDRFSASRP----SLTRSSLTIKS 78 (110)
T ss_pred CCceEEcCCCcEEEEEEE-CC-CCCEEEEEEECCCCCcEEEEEEcCCCceEecCccCCceEEECc----CCCccEEEECC
Confidence 456789999999999998 55 66789999842 111 0 00 0111111111 01234699999
Q ss_pred ccccccceeEEEEeecc
Q psy15128 269 LGALSDDQWKLIAKNIR 285 (292)
Q Consensus 269 ~~~~~~g~y~C~a~n~~ 285 (292)
+..+|+|.|.|.+.+..
T Consensus 79 ~~~~Dsg~Y~Ca~~~~~ 95 (110)
T cd05899 79 AEPEDSAVYLCASSLGG 95 (110)
T ss_pred CChhhCEEEEEEeeCCC
Confidence 99999999999998754
No 256
>PF13927 Ig_3: Immunoglobulin domain; PDB: 2D3V_A 1G0X_A 1VDG_A 1P7Q_D 3D2U_H 1UFU_A 1UGN_A 3VH8_H 3OQ3_B 4DKD_C ....
Probab=98.62 E-value=5.2e-08 Score=59.04 Aligned_cols=59 Identities=20% Similarity=0.317 Sum_probs=38.4
Q ss_pred CceEEEeeCCCCCC-CCeEEEeEcCeEeccCCCceEEecCCCccccccccccccccccccccceeEEEEee
Q psy15128 214 ETALLECGPPKGQP-EPTLHWKKNGQFIDLESSKRVSILGDPWFDSRRSRSIFGSVLGALSDDQWKLIAKN 283 (292)
Q Consensus 214 ~~~~l~C~~~~~~p-~~~~~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~a~n 283 (292)
..++|+|.+ .+.+ .+.++|+ +...... . ...........|.+..+...|.|.|+|+|+|
T Consensus 16 ~~~~l~C~~-~~~~~~~~~~W~-~~~~~~~-~--------~~~~~~~~~~~L~i~~v~~~~~g~y~C~a~N 75 (75)
T PF13927_consen 16 GSVTLTCSA-EGGPPPPSISWY-DSNPSFN-S--------NSRGSSSSNSTLTISNVTRSDNGTYTCIASN 75 (75)
T ss_dssp EEEEEEEEE-SSEESSEEEEEE-TEEEEEE-E--------EEEEEEEEEEEEEESSCCGGGTEEEEEEEEE
T ss_pred eeEEEEEEE-ccccCCeEEEEE-ecCCcee-e--------eeeeccceeeEEEEccCCHHhCcEEEEEEEC
Confidence 339999999 5555 8899999 1111100 0 0001112233688889999999999999998
No 257
>cd05715 Ig_P0-like Immunoglobulin (Ig)-like domain of Protein zero (P0) and similar proteins. Ig_P0ex-like: domain similar to the immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an extracellular Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin. This group also contains the Ig domain of Sodium channel subunit beta-2
Probab=98.61 E-value=9.3e-07 Score=58.49 Aligned_cols=76 Identities=16% Similarity=0.348 Sum_probs=48.9
Q ss_pred CCccEEecCCcEEEEEEEeeeC----CCeeEEEECCe------EEeec-cC-------CCc-ceeEEee-----ecEEEE
Q psy15128 43 PQDQKVGLNGIASFQCVAEGSP----LPSVFWTQEGS------QVLMF-PG-------NAY-GHLHVTQ-----EGTLRI 98 (292)
Q Consensus 43 ~~~~~~~~g~~~~l~C~~~~~~----~~~v~W~~~~~------~~~~~-~~-------~~~-~~~~~~~-----~~~l~i 98 (292)
|..+.+.+|++++|.|.+.... ...+.|++... .+... .+ ..+ .+..+.. +..|+|
T Consensus 5 p~~v~v~~G~~vtL~C~~s~~~~~~~~~~v~W~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I 84 (116)
T cd05715 5 PREVYAVNGSDVRLKCTFSSSEPISDDISVTWSFQPEGSGDTESIFHYHKGPYYPLKDGRFKDRVEWVGNPSRKDASIVI 84 (116)
T ss_pred CCeEEEEcCCCeEEEeEEeCCCCcCCceEEEEEEecCCCCCcEEEEEEcCCccccccCccccCcEEEecCCcCCeeEEEE
Confidence 4566788999999999886432 24699986321 11111 11 111 2222221 357999
Q ss_pred ccCCCCCCeEEEEEEEeCCc
Q psy15128 99 QGVQKEDAGFFVCSALSVAG 118 (292)
Q Consensus 99 ~~~~~~d~g~Y~C~~~~~~~ 118 (292)
.+++.+|+|.|.|.+.+...
T Consensus 85 ~~v~~~D~G~Y~C~v~~~~~ 104 (116)
T cd05715 85 HNLQFTDNGTYTCDVKNPPD 104 (116)
T ss_pred eeCCcccCEEEEEEEEeCCC
Confidence 99999999999999987644
No 258
>cd05880 Ig_EVA1 Immunoglobulin (Ig)-like domain of epithelial V-like antigen 1 (EVA). Ig_EVA: immunoglobulin (Ig) domain of epithelial V-like antigen 1 (EVA). EVA is also known as myelin protein zero-like 2. EVA is an adhesion molecule, which may play a role in structural organization of the thymus and early lymphocyte development.
Probab=98.60 E-value=7.8e-07 Score=58.57 Aligned_cols=76 Identities=14% Similarity=0.310 Sum_probs=48.9
Q ss_pred CCccEEecCCcEEEEEEEeeeC----CCeeEEEEC----CeE--EeeccC-------CC-cceeEEe-----eecEEEEc
Q psy15128 43 PQDQKVGLNGIASFQCVAEGSP----LPSVFWTQE----GSQ--VLMFPG-------NA-YGHLHVT-----QEGTLRIQ 99 (292)
Q Consensus 43 ~~~~~~~~g~~~~l~C~~~~~~----~~~v~W~~~----~~~--~~~~~~-------~~-~~~~~~~-----~~~~l~i~ 99 (292)
+..+.+.+|++++|.|.+...+ ...+.|++. +.. +..... .. ..+..+. .+..|+|.
T Consensus 5 ~~~v~~~~G~~v~L~C~~s~~~~~~~~~~i~W~~~~~~~~~~~~v~~~~~~~~~~~~~~f~~R~~~~~~~~~~~~sL~I~ 84 (115)
T cd05880 5 SKEVEAVNGTDVRLKCTFSSSAPIGDTLVITWNFRPLDGGREESVFYYHKRPYPPPDGRFKGRVVWDGNIMRRDASILIW 84 (115)
T ss_pred CceEEEEcCCCEEEEEEEEeCCCCCCcEEEEEEEECCCCCceeEEEEECCCccccCcccccCeEEEecCCcCCceEEEEe
Confidence 4466788999999999986532 236999752 221 111111 01 1222221 24479999
Q ss_pred cCCCCCCeEEEEEEEeCCc
Q psy15128 100 GVQKEDAGFFVCSALSVAG 118 (292)
Q Consensus 100 ~~~~~d~g~Y~C~~~~~~~ 118 (292)
+++.+|+|.|+|.+.+...
T Consensus 85 ~v~~~D~G~Y~C~v~~~~~ 103 (115)
T cd05880 85 QLQPTDNGTYTCQVKNPPD 103 (115)
T ss_pred eCChhhCEEEEEEEEeCCC
Confidence 9999999999999987654
No 259
>PF07686 V-set: Immunoglobulin V-set domain; InterPro: IPR013106 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the V-set domains, which are Ig-like domains resembling the antibody variable domain. V-set domains are found in diverse protein families, including immunoglobulin light and heavy chains; in several T-cell receptors such as CD2 (Cluster of Differentiation 2), CD4, CD80, and CD86; in myelin membrane adhesion molecules; in junction adhesion molecules (JAM); in tyrosine-protein kinase receptors; and in the programmed cell death protein 1 (PD1).; PDB: 1PY9_A 2NXY_D 1U9K_B 3RNK_A 3BP6_A 3BIK_B 3SBW_A 1NPU_A 3BP5_A 3RNQ_A ....
Probab=98.57 E-value=5.3e-07 Score=59.54 Aligned_cols=75 Identities=20% Similarity=0.396 Sum_probs=50.6
Q ss_pred CCCccEEecCCcEEEEEEEe-eeCCCeeEEEECCe---EEeec-----------cCCCcceeEEeee-----cEEEEccC
Q psy15128 42 RPQDQKVGLNGIASFQCVAE-GSPLPSVFWTQEGS---QVLMF-----------PGNAYGHLHVTQE-----GTLRIQGV 101 (292)
Q Consensus 42 ~~~~~~~~~g~~~~l~C~~~-~~~~~~v~W~~~~~---~~~~~-----------~~~~~~~~~~~~~-----~~l~i~~~ 101 (292)
.+..+.+.+|+++.|.|... ......+.|++... ..... ......+..+..+ ..|.|.++
T Consensus 7 ~~~~v~~~~G~~v~L~C~~~~~~~~~~v~W~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~i~~l 86 (114)
T PF07686_consen 7 PPSPVTVQEGESVTLPCSYSSSSNQSSVYWYRQSPGQGPQLIIRYSLSSTNETPTPSYSGRFTFSGNGSQNNFSLTIKNL 86 (114)
T ss_dssp EESEEEEETTSEEEEEEEEESSSSGSEEEEEEEETTSEEEEEEEEETTEEEEEEETTETTTEEEEEETTTTEEEEEESSE
T ss_pred eCCeEEEecCCCEEEEEEEeCCCCcceEEEEEECccccceeeeeeccceeeeccccceeeeeeeeecccCCeEEEEECCC
Confidence 35567888999999999998 44555899998322 11111 1111222322322 36999999
Q ss_pred CCCCCeEEEEEEEeC
Q psy15128 102 QKEDAGFFVCSALSV 116 (292)
Q Consensus 102 ~~~d~g~Y~C~~~~~ 116 (292)
+.+|+|.|.|.+...
T Consensus 87 ~~~DsG~Y~C~v~~~ 101 (114)
T PF07686_consen 87 QPSDSGTYFCQVSTS 101 (114)
T ss_dssp SGGGEEEEEEEEEES
T ss_pred CcCcCEEEEEEEEEC
Confidence 999999999999876
No 260
>cd05879 Ig_P0 Immunoglobulin (Ig)-like domain of Protein zero (P0). Ig_P0ex: immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin.
Probab=98.57 E-value=4e-07 Score=59.68 Aligned_cols=80 Identities=20% Similarity=0.285 Sum_probs=51.1
Q ss_pred cceEEeCCCceEEEeeCCCCC---CCCeEEEeEc---------------CeEeccCC---CceEEecCCCcccccccccc
Q psy15128 206 KDTRVASGETALLECGPPKGQ---PEPTLHWKKN---------------GQFIDLES---SKRVSILGDPWFDSRRSRSI 264 (292)
Q Consensus 206 ~~~~~~~g~~~~l~C~~~~~~---p~~~~~W~~~---------------g~~~~~~~---~~~~~~~~~~~~~~~~~~~l 264 (292)
....+..|+.++|.|...... +...+.|.+. |+...... ..|+.+..+. .....+|
T Consensus 6 ~ev~a~~G~~v~L~C~f~~~~~~~~~~~v~W~~~~~~~~~~~~v~~y~~g~~~~~~~~~f~~Rv~f~g~~---~~~daSI 82 (116)
T cd05879 6 REVYGTVGSDVTLSCSFWSSEWISDDISFTWHYQPDGSRDAISIFHYGKGQPYIDDVGPFKERIEWVGNP---SRKDGSI 82 (116)
T ss_pred ceEEEEcCCcEEEEEEEecCCCCCCcEEEEEEEcCCCCCccEEEEEeCCCceecccccCccCceEEeCCC---CcCeeEE
Confidence 456788999999999974322 2348999552 22111000 0133322221 1233478
Q ss_pred ccccccccccceeEEEEeeccccc
Q psy15128 265 FGSVLGALSDDQWKLIAKNIRNQQ 288 (292)
Q Consensus 265 ~i~~~~~~~~g~y~C~a~n~~g~~ 288 (292)
.|.+++..|+|+|+|.+.|..+..
T Consensus 83 ~I~nv~~sD~G~Y~C~v~n~p~~~ 106 (116)
T cd05879 83 VIHNLDYTDNGTFTCDVKNPPDIV 106 (116)
T ss_pred EEccCCcccCEEEEEEEEcCCCcC
Confidence 999999999999999999987743
No 261
>cd04980 IgV_L_kappa Immunoglobulin (Ig) light chain, kappa type, variable (V) domain. IgV_L_kappa: Immunoglobulin (Ig) light chain, kappa type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.
Probab=98.56 E-value=3.9e-07 Score=59.28 Aligned_cols=76 Identities=21% Similarity=0.295 Sum_probs=49.7
Q ss_pred EeCCCccEEecCCcEEEEEEEeeeC-CCeeEEEECCe-----EEeeccC----CCcceeEEe---eecEEEEccCCCCCC
Q psy15128 40 VVRPQDQKVGLNGIASFQCVAEGSP-LPSVFWTQEGS-----QVLMFPG----NAYGHLHVT---QEGTLRIQGVQKEDA 106 (292)
Q Consensus 40 ~~~~~~~~~~~g~~~~l~C~~~~~~-~~~v~W~~~~~-----~~~~~~~----~~~~~~~~~---~~~~l~i~~~~~~d~ 106 (292)
...|....+.+|++++|.|.+.+.. ...+.|||... .+..... ....+.... ....|.|.+++.+|+
T Consensus 4 ~Q~p~~~~v~~G~~v~L~C~~~~~~~~~~~~Wyrq~~g~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~~~~~Ds 83 (106)
T cd04980 4 TQSPATLSVSPGESATISCKASQSVSSNYLAWYQQKPGQAPKLLIYGASTLASGTPSRFSGSGSGTDFTLTISRVEPEDA 83 (106)
T ss_pred EECCCcEEECCCCCEEEEEEECCCCCCCcEEEEEECCCCCcEEEEECccccCCCCCCCEEEeccCCEEEEEECCCChHHC
Confidence 3445667888999999999987654 56799998431 1111110 011122221 223699999999999
Q ss_pred eEEEEEEEe
Q psy15128 107 GFFVCSALS 115 (292)
Q Consensus 107 g~Y~C~~~~ 115 (292)
|.|.|.+.+
T Consensus 84 g~Y~Ca~~~ 92 (106)
T cd04980 84 AVYYCQQYG 92 (106)
T ss_pred EEEEEEEeC
Confidence 999999854
No 262
>PHA03376 BARF1; Provisional
Probab=98.56 E-value=2.1e-07 Score=64.19 Aligned_cols=74 Identities=20% Similarity=0.369 Sum_probs=46.0
Q ss_pred CcccCCcCCCeeEEEEEEecccccccccEEEEEeCCCcEEeCCCccEEecCCcEEEEEEEeeeCCCeeEEEECCe
Q psy15128 1 MITEVKKSDEGKYQCYVQNMVGERETKPALLTVHAPPSFVVRPQDQKVGLNGIASFQCVAEGSPLPSVFWTQEGS 75 (292)
Q Consensus 1 ~i~~v~~~D~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~v~W~~~~~ 75 (292)
+|.+++++|.|+|+|.++......... -.|.+-.|-.+.+.........-....+.|...|+|.|.+.|.-+..
T Consensus 90 vI~~l~lSDdGtY~C~fQkge~~~~k~-ehLt~V~~~~Lsv~a~~~dFp~~~~~~i~C~sggfP~P~~~Wle~~~ 163 (221)
T PHA03376 90 VVTAANISHDGNYLCRMKLGETEVTKQ-EHLSVVKPLTLSVHSERSQFPDFSVLTVTCTVNAFPHPHVQWLMPEG 163 (221)
T ss_pred EEEeeeecCCceEEEEEEcCCCceeee-eeeeeeecceEEEEeccccCCCCCeeEEEEecCCcCCchheeccccC
Confidence 478999999999999998755332222 12222222222222211112224556899998889999999987543
No 263
>cd00099 IgV Immunoglobulin variable domain (IgV). IgV: Immunoglobulin variable domain (IgV). Members of the IgV family are components of immunoglobulin (Ig) and T cell receptors. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. Within the variable domain, there are regions of even more variability called the hypervariable or complementarity-determining regions (CDRs) which are responsible for antigen binding. A predominant feature of most Ig domains is the disulfide bridge connecting 2 beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=98.54 E-value=5.3e-07 Score=58.62 Aligned_cols=72 Identities=24% Similarity=0.442 Sum_probs=48.8
Q ss_pred EEecCCcEEEEEEEeee-CCCeeEEEECCe-----EEeec-c------CCCcceeEEe-----eecEEEEccCCCCCCeE
Q psy15128 47 KVGLNGIASFQCVAEGS-PLPSVFWTQEGS-----QVLMF-P------GNAYGHLHVT-----QEGTLRIQGVQKEDAGF 108 (292)
Q Consensus 47 ~~~~g~~~~l~C~~~~~-~~~~v~W~~~~~-----~~~~~-~------~~~~~~~~~~-----~~~~l~i~~~~~~d~g~ 108 (292)
.+.+|++++|.|.+... +...+.|++... .+... . .....+.... ....|.|.+++.+|+|.
T Consensus 2 ~v~~G~~v~L~C~~~~~~~~~~v~W~k~~~~~~~~~i~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~I~~v~~~D~G~ 81 (105)
T cd00099 2 SVSEGESVTLSCTYSGSFSSYYIFWYRQKPGKGPELLIYISSNGSQYAGGVKGRFSGTRDSSKSSFTLTISSLQPEDSAV 81 (105)
T ss_pred eecCCCCEEEEEEEeCCcCcceEEEEEECCCCCCEEEEEEeCCCCccCccCCCcEEEEEeccCCEEEEEECCCCHHHCEE
Confidence 46789999999999875 566899998532 11111 0 1112233222 23489999999999999
Q ss_pred EEEEEEeCCc
Q psy15128 109 FVCSALSVAG 118 (292)
Q Consensus 109 Y~C~~~~~~~ 118 (292)
|.|.+.+..+
T Consensus 82 Y~C~v~~~~~ 91 (105)
T cd00099 82 YYCAVSLSGG 91 (105)
T ss_pred EEEEEecCCC
Confidence 9999986543
No 264
>cd05711 Ig_FcalphaRI Immunoglobulin (IG)-like domain of of FcalphaRI. IG_FcalphaRI : immunoglobulin (IG)-like domain of of FcalphaRI. FcalphaRI (CD89) is an IgA-specific receptor that is expressed on monocytes, eosinophils, neutrophils and macrophages. FcalphaRI mediates IgA-induced immune effector responses such as phagocytosis, antibody-dependent cell-mediated cytotoxicity and respiratory burst. Both monomeric and dimeric IgA can bind to FcalphaRI, and monomeric or dimeric IgA immune complexes can activate phagocytosis and other immune responses through the clustering of FcalphaRI. The Fc RI ectodomain is comprised of two Ig-like domains oriented at about 90 degree to each another.
Probab=98.53 E-value=7.7e-07 Score=56.28 Aligned_cols=67 Identities=15% Similarity=0.183 Sum_probs=46.3
Q ss_pred ccEEecCCcEEEEEEEeeeCCCeeEEEECCeEEeeccCCCcceeEEeeecEEEEccCCCCCCeEEEEEEE
Q psy15128 45 DQKVGLNGIASFQCVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSAL 114 (292)
Q Consensus 45 ~~~~~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~ 114 (292)
...+.+|++++|.|.... +...+.|+|++......... ..........+.|.+++.+|+|.|.|...
T Consensus 9 ~~vV~~G~~VTL~C~~~~-~~~~f~l~k~g~~~~~~~~~--~~~~~~~~a~f~I~~~~~~~~G~Y~C~~~ 75 (94)
T cd05711 9 SPVVPSGENVTLQCHSDI-RFDRFILYKEGRSKPVLHLY--EKHHGGFQASFPLGPVTPAHAGTYRCYGS 75 (94)
T ss_pred CCccCCCCeEEEEEecCC-CCCEEEEEECCCCCCceecc--cccCCeEEEEEEecCCCcccCEEEEEEEE
Confidence 455789999999997754 45579999988653211000 00011224478999999999999999975
No 265
>cd05741 Ig_CEACAM_D1_like First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) and similar proteins. Ig_CEACAM_D1_like : immunoglobulin (IG)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily-like. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surf
Probab=98.53 E-value=2.4e-07 Score=58.65 Aligned_cols=75 Identities=12% Similarity=0.029 Sum_probs=48.4
Q ss_pred CCceEEEeeCCCCCCCCeEEEeEcCeEeccC-------CCceE-EecCCCccccccccccccccccccccceeEEEEeec
Q psy15128 213 GETALLECGPPKGQPEPTLHWKKNGQFIDLE-------SSKRV-SILGDPWFDSRRSRSIFGSVLGALSDDQWKLIAKNI 284 (292)
Q Consensus 213 g~~~~l~C~~~~~~p~~~~~W~~~g~~~~~~-------~~~~~-~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~a~n~ 284 (292)
|++|+|.|.+ ...+...+.|+++....... ..... .....+........+|.|..++.+|+|.|+|.+.+.
T Consensus 1 G~~VtL~c~~-~~~~~~~i~W~~~~~~~~~~~i~~~~~~~~~~~~~~~~~R~~~~~~~sL~I~~l~~~DsG~Y~c~v~~~ 79 (92)
T cd05741 1 GESVTLPVSN-LPENLQEITWYKGKDKSVEAEIASYIATNSTVFGPAYSGRETIYPNGSLLIQNLTKEDSGTYTLQIIST 79 (92)
T ss_pred CCcEEEEccc-CCCCCEEEEEECCCCCCcceEEEEEecCCceeECCCcCCeEEEcCCceEEEccCCchhcEEEEEEEEcC
Confidence 7899999997 55666699999975332100 00000 001112222233357999999999999999999988
Q ss_pred cccc
Q psy15128 285 RNQQ 288 (292)
Q Consensus 285 ~g~~ 288 (292)
.|..
T Consensus 80 ~~~~ 83 (92)
T cd05741 80 NGVT 83 (92)
T ss_pred CCcE
Confidence 7543
No 266
>cd00098 IgC Immunoglobulin Constant domain. IgC: Immunoglobulin constant domain (IgC). Members of the IgC family are components of immunoglobulin, T-cell receptors, CD1 cell surface glycoproteins, secretory glycoproteins A/C, and Major Histocompatibility Complex (MHC) class I/II molecules. In immunoglobulins, each chain is composed of one variable domain (IgV) and one or more IgC domains. These names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. The IgV domain is responsible for antigen binding, and the IgC domain is involved in oligomerization and molecular interactions.
Probab=98.52 E-value=7.5e-07 Score=56.73 Aligned_cols=71 Identities=15% Similarity=0.243 Sum_probs=48.6
Q ss_pred ecCCcEEEEEEEeee-CC-CeeEEEECCeEEeeccC----CCcceeEEeeecEEEEccCCCCCCeEEEEEEEeCCcC
Q psy15128 49 GLNGIASFQCVAEGS-PL-PSVFWTQEGSQVLMFPG----NAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGS 119 (292)
Q Consensus 49 ~~g~~~~l~C~~~~~-~~-~~v~W~~~~~~~~~~~~----~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~~~ 119 (292)
..|+.++|.|.+.|+ |. ..++|++++..+..... .......+...+.|.+......+.+.|+|.+.+....
T Consensus 11 ~~~~~~~L~C~a~g~~P~~~~i~W~~~g~~~~~~~~~~~~~~~~~gt~~~~s~l~v~~~~~~~~~~y~C~v~h~~~~ 87 (95)
T cd00098 11 LLGGSVTLTCLATGFYPPDITVTWLKNGKELTSGVTTTPPVPNSDGTYSVSSQLTVSPSDWNSGDTYTCVVTHESLP 87 (95)
T ss_pred HcCCCeEEEEEEeeEECCCcEEEEEECCEECCCceeccccccCCCCCEEEEEEEEECHHHhCCCCCEEEEEEeCCCC
Confidence 468899999999997 53 58999999877632211 0011112233446777777778999999999987553
No 267
>cd07694 Ig2_CD4 Second immunoglobulin (Ig) domain of CD4. Ig2_CD4; second immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy.
Probab=98.50 E-value=3e-06 Score=51.26 Aligned_cols=64 Identities=14% Similarity=0.180 Sum_probs=47.3
Q ss_pred ccEEecCCcEEEEEEEeeeC--CCeeEEEECCeEEeeccCCCcceeEEeeecEEEEccCCCCCCeEEEEEEEeC
Q psy15128 45 DQKVGLNGIASFQCVAEGSP--LPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSV 116 (292)
Q Consensus 45 ~~~~~~g~~~~l~C~~~~~~--~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~ 116 (292)
...+..|++++|.|.....+ .+.+.|...+.... .........|.+..+...|+|.++|.+...
T Consensus 8 ~~~lL~G~sLtLtl~~~s~s~p~~~i~w~~P~n~~~--------~~~~~~~ktL~~~qv~~qdSG~WtC~V~~~ 73 (88)
T cd07694 8 SDHVLSGTNLTLTLHGSSNSLPAFKVEWRGPGNKSK--------QILNQDKKTLNLVQLGPNDSGTWDCIVSVN 73 (88)
T ss_pred CCeeecCCcEEEEEecCCCCCCCccEEEeCCCCccc--------eeccCCccEEEeceeCcccCCEEEEEEEEC
Confidence 34688999999999986543 45999987655421 111123558999999999999999999754
No 268
>cd05888 Ig1_Nectin-4_like Frst immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor) and similar proteins. Ig1_Nectin-4_like: domain similar to the first immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor). Nectin-4 belongs to the nectin family, which is comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example nectin-4 trans-interacts with nectin-1. Nectin-4 has also been shown to interact with the actin filament-binding protein, afadin. Unlike the other nectins, which are widely expressed in adult tissues, nectin-4 is mainly expressed during embryogenesis, and is not detected in normal adult
Probab=98.48 E-value=4.6e-06 Score=53.46 Aligned_cols=76 Identities=22% Similarity=0.501 Sum_probs=46.9
Q ss_pred cEEEEEEEeeeC---CCeeEEEECCe-----EEee--cc-CCC-----cceeEEe-----eecEEEEccCCCCCCeEEEE
Q psy15128 53 IASFQCVAEGSP---LPSVFWTQEGS-----QVLM--FP-GNA-----YGHLHVT-----QEGTLRIQGVQKEDAGFFVC 111 (292)
Q Consensus 53 ~~~l~C~~~~~~---~~~v~W~~~~~-----~~~~--~~-~~~-----~~~~~~~-----~~~~l~i~~~~~~d~g~Y~C 111 (292)
+++|.|.....+ ...+.|+|... .+.. .. +.. .++..+. .+..|+|.+++.+|+|.|.|
T Consensus 2 ~v~L~C~~~~~~~~~~~~v~W~k~~~~~~~~~i~~~~~~~~~~~~~~~~~Rv~f~~~~~~~~~sL~I~nv~~sD~GtY~C 81 (100)
T cd05888 2 DTRLPCRYNVSDGETVVQVLWIRENAGGVEEEIALLHFKYGQTEFHAYEGRVRFETPNPIADGALILRNAVQADEGKYKC 81 (100)
T ss_pred CEEEEeEEecCCCCcEEEEEEEEccCCCCcEEEEEEeccCCcccCCCccCcEEEeCCCCCCceEEEEecCccccceEEEE
Confidence 689999886433 33799998421 1111 10 101 1233333 24589999999999999999
Q ss_pred EEEe-CCcCeeEEEEEEE
Q psy15128 112 SALS-VAGSTTVRAFLQV 128 (292)
Q Consensus 112 ~~~~-~~~~~~~~~~l~v 128 (292)
.+.+ ..|..+..+.|.|
T Consensus 82 ~v~~~p~g~~~~~~~L~V 99 (100)
T cd05888 82 RVITFPAGNFEAELVLTV 99 (100)
T ss_pred EEEeCCCCCeeeEEEEEe
Confidence 9986 5555444444443
No 269
>cd05886 Ig1_Nectin-1_like First immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111) and similar proteins. Ig1_Nectin-1_like: domain similar to the first immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111). Nectin-1 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. In addition nectins heterophilically trans-interact with other CAMs such as nectin-like molecules (Necls), nectin-1 for example, has been shown to trans-interact with Necl-1. Nectins also interact with various other proteins, including the actin filament (F-actin)-binding protein, afadin. Mutation in the human nectin-1 gene is
Probab=98.48 E-value=3.9e-06 Score=53.32 Aligned_cols=76 Identities=18% Similarity=0.388 Sum_probs=48.3
Q ss_pred cEEEEEEEeee-CCC---eeEEEECC----eEEeeccC--------CCcceeEEe----eecEEEEccCCCCCCeEEEEE
Q psy15128 53 IASFQCVAEGS-PLP---SVFWTQEG----SQVLMFPG--------NAYGHLHVT----QEGTLRIQGVQKEDAGFFVCS 112 (292)
Q Consensus 53 ~~~l~C~~~~~-~~~---~v~W~~~~----~~~~~~~~--------~~~~~~~~~----~~~~l~i~~~~~~d~g~Y~C~ 112 (292)
+++|.|.+... |.. .|.|.+.. ..+..... .-.++..+. .+.+|.|.+++.+|.|.|+|.
T Consensus 2 ~v~L~C~f~~~~~~~~~~~V~W~k~~~~~~~~va~y~~~~g~~~~~~f~~Rv~f~~~~~~daSi~i~nl~~~D~G~Y~C~ 81 (99)
T cd05886 2 DVVLHCSFINPLPPVKITQVTWQKLTNGSKQNVAIYNPSMGVSVLPPYRERVTFKNPSFEDGTISLSRLELEDEGVYICE 81 (99)
T ss_pred cEEEEeEeecCCCCCCeEEEEEEECCCCCceEEEEECCcCCcccCccccCcEEEcCCCCCcceEEEcCCccccCEEEEEE
Confidence 58999998742 211 69998741 12211111 112333332 236899999999999999999
Q ss_pred EEe-CCcCeeEEEEEEE
Q psy15128 113 ALS-VAGSTTVRAFLQV 128 (292)
Q Consensus 113 ~~~-~~~~~~~~~~l~v 128 (292)
+.+ ..|..+..+.|.|
T Consensus 82 v~t~P~g~~~~~~~L~V 98 (99)
T cd05886 82 FATFPTGNRESQLNLTV 98 (99)
T ss_pred EEeCCCCCeEEEEEEEE
Confidence 998 5666565666654
No 270
>cd05880 Ig_EVA1 Immunoglobulin (Ig)-like domain of epithelial V-like antigen 1 (EVA). Ig_EVA: immunoglobulin (Ig) domain of epithelial V-like antigen 1 (EVA). EVA is also known as myelin protein zero-like 2. EVA is an adhesion molecule, which may play a role in structural organization of the thymus and early lymphocyte development.
Probab=98.47 E-value=5.5e-07 Score=59.30 Aligned_cols=80 Identities=21% Similarity=0.291 Sum_probs=49.1
Q ss_pred CcceEEeCCCceEEEeeCCCCCC---CCeEEEeEc----CeE--ec-cCCC----------ceEEecCCCcccccccccc
Q psy15128 205 PKDTRVASGETALLECGPPKGQP---EPTLHWKKN----GQF--ID-LESS----------KRVSILGDPWFDSRRSRSI 264 (292)
Q Consensus 205 ~~~~~~~~g~~~~l~C~~~~~~p---~~~~~W~~~----g~~--~~-~~~~----------~~~~~~~~~~~~~~~~~~l 264 (292)
+..+.+.+|++++|.|......+ ...|.|++. +.+ +. ...+ .++.+..+ ......+|
T Consensus 5 ~~~v~~~~G~~v~L~C~~s~~~~~~~~~~i~W~~~~~~~~~~~~v~~~~~~~~~~~~~~f~~R~~~~~~---~~~~~~sL 81 (115)
T cd05880 5 SKEVEAVNGTDVRLKCTFSSSAPIGDTLVITWNFRPLDGGREESVFYYHKRPYPPPDGRFKGRVVWDGN---IMRRDASI 81 (115)
T ss_pred CceEEEEcCCCEEEEEEEEeCCCCCCcEEEEEEEECCCCCceeEEEEECCCccccCcccccCeEEEecC---CcCCceEE
Confidence 35678899999999999633222 236999751 211 11 0000 01111100 01223469
Q ss_pred ccccccccccceeEEEEeecccc
Q psy15128 265 FGSVLGALSDDQWKLIAKNIRNQ 287 (292)
Q Consensus 265 ~i~~~~~~~~g~y~C~a~n~~g~ 287 (292)
.|..++.+|+|.|.|.+.|..+.
T Consensus 82 ~I~~v~~~D~G~Y~C~v~~~~~~ 104 (115)
T cd05880 82 LIWQLQPTDNGTYTCQVKNPPDV 104 (115)
T ss_pred EEeeCChhhCEEEEEEEEeCCCC
Confidence 99999999999999999997764
No 271
>cd05901 Ig_Versican Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican. Ig_Versican: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Like aggrecan, versican has a wide distribution in connective tissue and extracellular matrices. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA
Probab=98.47 E-value=8.9e-06 Score=52.91 Aligned_cols=80 Identities=24% Similarity=0.438 Sum_probs=53.1
Q ss_pred CCcEEEEEEEeeeC-----------CCeeEEEEC-----C-----eEEeeccC-------CCcceeEEe------eecEE
Q psy15128 51 NGIASFQCVAEGSP-----------LPSVFWTQE-----G-----SQVLMFPG-------NAYGHLHVT------QEGTL 96 (292)
Q Consensus 51 g~~~~l~C~~~~~~-----------~~~v~W~~~-----~-----~~~~~~~~-------~~~~~~~~~------~~~~l 96 (292)
|++++|.|.+.-.| ...|.|++- + ..+....+ .-.++..+. .+.+|
T Consensus 2 ~g~v~LPC~f~~~p~~p~~~~~~~~~~rIkW~~~~~~~~g~~~~e~~Vlv~~~g~~~~~~~y~gRv~l~~~~~~~g~asL 81 (117)
T cd05901 2 SGSVVLPCRFSTLPTLPPSVITTSEFLRIKWTKIEVDKNGKDHKETTVLVAQNGIIKIGQEYMGRVSVPSHPEDQGDASL 81 (117)
T ss_pred CCCEEEeeEEEecCCCCCcccCCCCCcEEEEEEecccccccCCCccEEEEEECCEEEECCcccCcEEeeccCCcCCceEE
Confidence 67899999887433 237999874 1 11111111 122344432 34689
Q ss_pred EEccCCCCCCeEEEEEEEeCCcCeeEEEEEEEEe
Q psy15128 97 RIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVTS 130 (292)
Q Consensus 97 ~i~~~~~~d~g~Y~C~~~~~~~~~~~~~~l~v~~ 130 (292)
.|.+++.+|+|.|.|.+..........+.|.|..
T Consensus 82 ~i~~v~~sD~G~Y~C~V~~g~~~~~~~v~L~V~G 115 (117)
T cd05901 82 TIVKLRASDAGVYRCEVMHGIEDTQDTVSLDVSG 115 (117)
T ss_pred EEcccccccCEEEEEEEEECCcccEEEEEEEEEE
Confidence 9999999999999999998777667777776653
No 272
>cd04982 IgV_TCR_gamma Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) gamma chain. IgV_TCR_gamma: immunoglobulin (Ig) variable (V) domain of the gamma chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is
Probab=98.47 E-value=1.2e-06 Score=58.08 Aligned_cols=74 Identities=18% Similarity=0.343 Sum_probs=49.5
Q ss_pred CCCccEEecCCcEEEEEEEee--eCCCeeEEEECC--eE---Ee-ecc--------CCCcceeEEe-----eecEEEEcc
Q psy15128 42 RPQDQKVGLNGIASFQCVAEG--SPLPSVFWTQEG--SQ---VL-MFP--------GNAYGHLHVT-----QEGTLRIQG 100 (292)
Q Consensus 42 ~~~~~~~~~g~~~~l~C~~~~--~~~~~v~W~~~~--~~---~~-~~~--------~~~~~~~~~~-----~~~~l~i~~ 100 (292)
.|....+.+|++++|.|.+.+ .+.+.+.|+|.. .. +. ... .....+.... ....|+|.+
T Consensus 4 ~p~~~~~~~G~~v~l~C~~~~~~~~~~~v~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~ 83 (116)
T cd04982 4 PQLSITREESKSVTISCKVSGIDFSTTYIHWYRQKPGQALERLLYVSSTSTQRKLSGGTKNKFEARKDVGKSTSTLTIQN 83 (116)
T ss_pred cCCeEEeCCCCCEEEEEEEeCCCccccEEEEEEECCCCCCEEEEEEecCCCcEEeCcccCCCEEEEEECCCCEEEEEEEE
Confidence 345567788999999999877 567789999952 11 11 010 0112233322 234799999
Q ss_pred CCCCCCeEEEEEEEe
Q psy15128 101 VQKEDAGFFVCSALS 115 (292)
Q Consensus 101 ~~~~d~g~Y~C~~~~ 115 (292)
++.+|+|.|.|.+..
T Consensus 84 ~~~~Dsg~Y~C~~~~ 98 (116)
T cd04982 84 LEKEDSATYYCAYWE 98 (116)
T ss_pred CCHHHCEEEEEEEec
Confidence 999999999999854
No 273
>cd05761 Ig2_Necl-1-4_like Second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-4 (also known as cell adhesion molecules CADM3, CADM1, CADM2, and CADM4, respectively). Ig2_Necl-1-4_like: domain similar to the second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), Necl-3 (CADM2) and Necl-4 (CADM4). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cel
Probab=98.46 E-value=2.3e-06 Score=52.63 Aligned_cols=66 Identities=18% Similarity=0.287 Sum_probs=43.2
Q ss_pred EEEEEEEeee-CCCeeEEEECCeEEeeccCCC--cceeEEeeecEEEEccCCCCCCeEEEEEEEeCCcC
Q psy15128 54 ASFQCVAEGS-PLPSVFWTQEGSQVLMFPGNA--YGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGS 119 (292)
Q Consensus 54 ~~l~C~~~~~-~~~~v~W~~~~~~~~~~~~~~--~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~~~ 119 (292)
+.|.|.+.+. |.+.+.|++++..+....... .....+...+.|.+.....++.+.|+|.+.+....
T Consensus 2 ~~L~C~~~~~~P~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~s~l~~~~~~~d~g~~~~C~v~h~~l~ 70 (82)
T cd05761 2 VELTCTSSGSKPAATIRWFKGDKELKGVKLKEEDENGKTFTVTSSLRFQVDREDDGAPIICRVDHPALK 70 (82)
T ss_pred EEEEEEecCcCcCCeEEEEECCEEccCceeeEecCCCCEEEEEEEEEEEcchhhCCCEEEEEEeChhcC
Confidence 6899999774 888999999998763111000 00012223345777766677778999999987554
No 274
>cd04980 IgV_L_kappa Immunoglobulin (Ig) light chain, kappa type, variable (V) domain. IgV_L_kappa: Immunoglobulin (Ig) light chain, kappa type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.
Probab=98.46 E-value=9.9e-07 Score=57.37 Aligned_cols=74 Identities=18% Similarity=0.215 Sum_probs=47.9
Q ss_pred CcceEEeCCCceEEEeeCCCCCC-CCeEEEeEcC--e---EeccCC-------CceEEecCCCccccccccccccccccc
Q psy15128 205 PKDTRVASGETALLECGPPKGQP-EPTLHWKKNG--Q---FIDLES-------SKRVSILGDPWFDSRRSRSIFGSVLGA 271 (292)
Q Consensus 205 ~~~~~~~~g~~~~l~C~~~~~~p-~~~~~W~~~g--~---~~~~~~-------~~~~~~~~~~~~~~~~~~~l~i~~~~~ 271 (292)
|....+.+|++++|.|.+ .+.. ...+.|++.. + .|.... ..++..... .....|.|..++.
T Consensus 7 p~~~~v~~G~~v~L~C~~-~~~~~~~~~~Wyrq~~g~~~~~l~~~~~~~~~~~~~r~~~~~~-----~~~~~L~I~~~~~ 80 (106)
T cd04980 7 PATLSVSPGESATISCKA-SQSVSSNYLAWYQQKPGQAPKLLIYGASTLASGTPSRFSGSGS-----GTDFTLTISRVEP 80 (106)
T ss_pred CCcEEECCCCCEEEEEEE-CCCCCCCcEEEEEECCCCCcEEEEECccccCCCCCCCEEEecc-----CCEEEEEECCCCh
Confidence 456788999999999997 5444 5689999832 1 111000 011211111 1223588999999
Q ss_pred cccceeEEEEeec
Q psy15128 272 LSDDQWKLIAKNI 284 (292)
Q Consensus 272 ~~~g~y~C~a~n~ 284 (292)
+|+|.|.|.+.+.
T Consensus 81 ~Dsg~Y~Ca~~~~ 93 (106)
T cd04980 81 EDAAVYYCQQYGT 93 (106)
T ss_pred HHCEEEEEEEeCC
Confidence 9999999999754
No 275
>PHA02987 Ig domain OX-2-like protein; Provisional
Probab=98.45 E-value=2.3e-06 Score=59.46 Aligned_cols=86 Identities=15% Similarity=0.223 Sum_probs=57.9
Q ss_pred ccEEecCCcEEEEEEEe-eeCCCeeEEEECCeEEeeccC-------CCcceeEE----eeecEEEEccCCCCCCeEEEEE
Q psy15128 45 DQKVGLNGIASFQCVAE-GSPLPSVFWTQEGSQVLMFPG-------NAYGHLHV----TQEGTLRIQGVQKEDAGFFVCS 112 (292)
Q Consensus 45 ~~~~~~g~~~~l~C~~~-~~~~~~v~W~~~~~~~~~~~~-------~~~~~~~~----~~~~~l~i~~~~~~d~g~Y~C~ 112 (292)
.+.+.+|++++|.|... +...+.+.|+|..+.+..... .-..+... .....|+|.+++.+|+|.|+|.
T Consensus 24 ~v~V~ege~VtLsCs~t~s~~~~qVtWkK~~~~IatY~~~g~~i~~~Fk~Rve~mS~s~~~StItIknVt~sDeGcY~C~ 103 (189)
T PHA02987 24 KITVSEHVNVKISCNKTSSFNSILITWKKNNKTIAGYGPCGPVIVDKFKNKIEYLSKSFNESTILIKNVSLKDNGCYTCI 103 (189)
T ss_pred EEEEcCCCCEEEEEecCCCCccceEEEEEcCCCEEEEecCCcEEChhhcCeEEEeccCCCcceEEEEeCChhhCeEEEEE
Confidence 45688999999999984 445678999997543322111 00122221 1345899999999999999999
Q ss_pred EEe-CCc-CeeEEEEEEEEe
Q psy15128 113 ALS-VAG-STTVRAFLQVTS 130 (292)
Q Consensus 113 ~~~-~~~-~~~~~~~l~v~~ 130 (292)
+.. ..| ..+....|+|..
T Consensus 104 F~tfp~G~~~~gt~CLtVt~ 123 (189)
T PHA02987 104 FNTLLSKNNEKGVVCLNVTT 123 (189)
T ss_pred EEecCCCCCceeEEEEEEEc
Confidence 874 344 556666777763
No 276
>cd05846 Ig1_MRC-OX-2_like First immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200) and similar proteins. Ig1_ MRC-OX-2_like: domain similar to the first immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200). MRC OX-2 is a membrane glycoprotein expressed in a variety of lymphoid and non-lymphoid cells in rats. It has a similar broad distribution pattern in humans. MRC OX-2 may regulate myeloid cell activity. The protein has an extracellular portion containing two Ig-like domains, a transmembrane portion, and a cytoplasmic portion.
Probab=98.45 E-value=2.6e-06 Score=54.32 Aligned_cols=78 Identities=19% Similarity=0.320 Sum_probs=48.1
Q ss_pred CCcEEEEEEEeeeCC-CeeEEEECCe----EEeec---cC-----CCcceeEE----eeecEEEEccCCCCCCeEEEEEE
Q psy15128 51 NGIASFQCVAEGSPL-PSVFWTQEGS----QVLMF---PG-----NAYGHLHV----TQEGTLRIQGVQKEDAGFFVCSA 113 (292)
Q Consensus 51 g~~~~l~C~~~~~~~-~~v~W~~~~~----~~~~~---~~-----~~~~~~~~----~~~~~l~i~~~~~~d~g~Y~C~~ 113 (292)
|++++|.|....... ..+.|+|... .+... .+ .-..+... ..+..|+|.+++.+|+|.|.|.+
T Consensus 1 G~~vtL~C~~~~~~~~~~v~W~k~~~~~~~~i~~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~nv~~~D~G~Y~C~~ 80 (97)
T cd05846 1 GGNVTLSCNLTLPEEVLQVTWQKIQGSSPENIATYSEKYGVKIQPSYFRRRSITSLGLNSTSITIWNVTLEDEGCYKCIF 80 (97)
T ss_pred CCcEEEEEEeCCCCeeEEEEEEEcCCCCceEEEEEcccCCcccCCCccCeEEEcCCCCCccEEEEeCCceeeeEEEEEEE
Confidence 789999998754322 2699998532 11111 01 11112222 12457999999999999999998
Q ss_pred Ee-CCcCeeEEEEEEE
Q psy15128 114 LS-VAGSTTVRAFLQV 128 (292)
Q Consensus 114 ~~-~~~~~~~~~~l~v 128 (292)
.. ..|.....+.|+|
T Consensus 81 ~~~p~g~~~~~~~L~v 96 (97)
T cd05846 81 NTFPDGSKSGTMCLTV 96 (97)
T ss_pred EeCCCCCeeeEEEEEE
Confidence 73 4555555566654
No 277
>PF08205 C2-set_2: CD80-like C2-set immunoglobulin domain ; InterPro: IPR013162 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the C2-set type domains found in the T-cell antigen CD80, as well as in related proteins. CD80 (B7-1) is a glycoprotein expressed on antigen-presenting cells []. The shared ligands on CD80 and CD86 (B7-2) deliver the co-stimulatory signal through CD28 and CTLA-4 on T-cells, where CD28 augments the T-cell response and CTLA-4 attenuates it [].; PDB: 3S58_A 3O3U_N 3CJJ_A 3S59_A 2PF6_B 2PET_A 3ALP_A 3SKU_D 3U83_A 3U82_B ....
Probab=98.45 E-value=2.2e-07 Score=58.32 Aligned_cols=75 Identities=17% Similarity=0.242 Sum_probs=47.2
Q ss_pred CCceEEEeeCCCCCCCCeEEEeEcCeEeccCCCceEEecCCCccccccccccccccccccccceeEEEEeecccccc
Q psy15128 213 GETALLECGPPKGQPEPTLHWKKNGQFIDLESSKRVSILGDPWFDSRRSRSIFGSVLGALSDDQWKLIAKNIRNQQQ 289 (292)
Q Consensus 213 g~~~~l~C~~~~~~p~~~~~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~a~n~~g~~~ 289 (292)
|+.+.|+|.+..++|++.|+|+.++..+............++.+... ..|.+..-...+...++|.|.|..-+..
T Consensus 14 ~~~~~~~C~s~~~~P~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~--S~l~~~~~~~~~~~~~~C~~~~~~~~~~ 88 (89)
T PF08205_consen 14 GEEVTLTCSSSGGYPPPQITWYLDGGPVVASNTTQSSSPDNGLFTVS--STLTLTPTREDHGKTLTCRASHPALSQS 88 (89)
T ss_dssp TEEEEEEEEEEEEBS-EEEEEEETTCEECEEEEEEEEETTTTTEEEE--EEEEEETTGGGTTEEEEEEEEETTCCEE
T ss_pred ceEEEEEEEeCCeECCeEEEEEECCCceeeeeeeeeeccCCCcceEE--EEEEEEcChHHCCeEEEEEEECCccCCC
Confidence 67999999887889999999999998772112222233333333322 2344443333344489999999876554
No 278
>cd00099 IgV Immunoglobulin variable domain (IgV). IgV: Immunoglobulin variable domain (IgV). Members of the IgV family are components of immunoglobulin (Ig) and T cell receptors. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. Within the variable domain, there are regions of even more variability called the hypervariable or complementarity-determining regions (CDRs) which are responsible for antigen binding. A predominant feature of most Ig domains is the disulfide bridge connecting 2 beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=98.42 E-value=6.5e-07 Score=58.20 Aligned_cols=74 Identities=18% Similarity=0.197 Sum_probs=48.6
Q ss_pred EEeCCCceEEEeeCCCCC-CCCeEEEeEcCe-----Eec-c---------CCCceEEecCCCcccccccccccccccccc
Q psy15128 209 RVASGETALLECGPPKGQ-PEPTLHWKKNGQ-----FID-L---------ESSKRVSILGDPWFDSRRSRSIFGSVLGAL 272 (292)
Q Consensus 209 ~~~~g~~~~l~C~~~~~~-p~~~~~W~~~g~-----~~~-~---------~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~ 272 (292)
.+.+|++++|.|.+ ... +...+.|++... .+. . ....++.+..... ....+|.|..++.+
T Consensus 2 ~v~~G~~v~L~C~~-~~~~~~~~v~W~k~~~~~~~~~i~~~~~~~~~~~~~~~~r~~~~~~~~---~~~~sL~I~~v~~~ 77 (105)
T cd00099 2 SVSEGESVTLSCTY-SGSFSSYYIFWYRQKPGKGPELLIYISSNGSQYAGGVKGRFSGTRDSS---KSSFTLTISSLQPE 77 (105)
T ss_pred eecCCCCEEEEEEE-eCCcCcceEEEEEECCCCCCEEEEEEeCCCCccCccCCCcEEEEEecc---CCEEEEEECCCCHH
Confidence 57799999999997 554 667899998432 110 0 0111222211110 12347899999999
Q ss_pred ccceeEEEEeeccc
Q psy15128 273 SDDQWKLIAKNIRN 286 (292)
Q Consensus 273 ~~g~y~C~a~n~~g 286 (292)
|+|.|.|.+.+..+
T Consensus 78 D~G~Y~C~v~~~~~ 91 (105)
T cd00099 78 DSAVYYCAVSLSGG 91 (105)
T ss_pred HCEEEEEEEecCCC
Confidence 99999999998775
No 279
>cd05774 Ig_CEACAM_D1 First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM). IG_CEACAM_D1: immunoglobulin (Ig)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the D
Probab=98.41 E-value=1.1e-06 Score=56.54 Aligned_cols=80 Identities=18% Similarity=0.071 Sum_probs=48.7
Q ss_pred ceEEeCCCceEEEeeCCCCCCCCeEEEeEcCe-----Eec-cCCCceEEe---cCCCcccccccccccccccccccccee
Q psy15128 207 DTRVASGETALLECGPPKGQPEPTLHWKKNGQ-----FID-LESSKRVSI---LGDPWFDSRRSRSIFGSVLGALSDDQW 277 (292)
Q Consensus 207 ~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~g~-----~~~-~~~~~~~~~---~~~~~~~~~~~~~l~i~~~~~~~~g~y 277 (292)
+..+.+|+++.|.|+- ...+...+.|+|+.. .|. ......... ...+........+|.|..++.+|+|.|
T Consensus 7 p~~~~~G~~V~L~v~~-~p~~~~~~~W~kg~~~~~~~~I~~y~~~~~~~~~gp~~~gR~~~~~ngSL~I~~v~~~D~G~Y 85 (105)
T cd05774 7 PPQVAEGENVLLLVHN-LPENLLAYAWYKGKTVSPNFLIASYIISTNSSTPGPAYSGRETIYPNGSLLIQNVTQKDTGFY 85 (105)
T ss_pred CCcccCCCCEEEEecC-CCCCceEEEEEcCCCCCCCEEEEEEECCCcccccCcccCCcEEEeCCCcEEEecCCcccCEEE
Confidence 4467899999999974 333334999999632 110 000000000 111222222334799999999999999
Q ss_pred EEEEeecccc
Q psy15128 278 KLIAKNIRNQ 287 (292)
Q Consensus 278 ~C~a~n~~g~ 287 (292)
.|.+.|..+.
T Consensus 86 ~~~v~~~~~~ 95 (105)
T cd05774 86 TLQTITTNFQ 95 (105)
T ss_pred EEEEEeCCcc
Confidence 9999987643
No 280
>cd05775 Ig_SLAM-CD84_like_N N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like. Ig_SLAM-CD84_like_N: The N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like. The SLAM family is a group of immune-cell specific receptors that can regulate both adaptive and innate immune responses. Members of this group include proteins such as CD84, SLAM (CD150), Ly-9 (CD229), NTB-A (ly-108, SLAM6), 19A (CRACC), and SLAMF9. The genes coding for the SLAM family are nested on chromosome 1, in humans at 1q23, and in mice at 1H2. The SLAM family is a subset of the CD2 family, which also includes CD2 and CD58 located on chromosome 1 at 1p13 in humans. In mice, CD2 is located on chromosome 3, and there is no CD58 homolog. The SLAM family proteins are organized as an extracellular domain with either two or four Ig-like domains, a single transmembrane segment, and a cytoplasmic region
Probab=98.41 E-value=7.6e-07 Score=56.72 Aligned_cols=78 Identities=12% Similarity=0.140 Sum_probs=50.0
Q ss_pred eCCCceEEEeeCCCCCCCCeEEEeEcCeEeccCCC----ceEEecCCC---cccc-ccccccccccccccccceeEEEEe
Q psy15128 211 ASGETALLECGPPKGQPEPTLHWKKNGQFIDLESS----KRVSILGDP---WFDS-RRSRSIFGSVLGALSDDQWKLIAK 282 (292)
Q Consensus 211 ~~g~~~~l~C~~~~~~p~~~~~W~~~g~~~~~~~~----~~~~~~~~~---~~~~-~~~~~l~i~~~~~~~~g~y~C~a~ 282 (292)
..|++|+|.|..........+.|++....+..... ......... .+.. ....+|.|..++.+|+|.|.|.+.
T Consensus 2 ~~G~sVtL~c~~~~~~~~~~v~W~~~~~~~i~~~~~~~~~~~~~~~~~f~~R~~~~~~~~sL~I~~~~~~DsG~Y~c~v~ 81 (97)
T cd05775 2 ILGGSVTLPLNIPDGTEIESITWSFNTSLAIITPGEETAPEIIVTDPSYKERVNFSQNDYSLQISNLKMEDAGSYRAEIN 81 (97)
T ss_pred ccCCeEEEeCCCCCCcEEEEEEEecCCEeEEEecCCCCCCccEEeCCCceeeEEecCCceeEEECCCchHHCEEEEEEEE
Confidence 46999999998733255568999997543321111 111111111 1111 223579999999999999999999
Q ss_pred eccccc
Q psy15128 283 NIRNQQ 288 (292)
Q Consensus 283 n~~g~~ 288 (292)
+..|..
T Consensus 82 ~~~~~~ 87 (97)
T cd05775 82 TKNGVT 87 (97)
T ss_pred cCCCCe
Confidence 887765
No 281
>cd05714 Ig_CSPGs_LP Immunoglobulin (Ig)-like domain of chondroitin sulfate proteoglycans (CSPGs), human cartilage link protein (LP) and similar proteins. Ig_CSPGs_LP: immunoglobulin (Ig)-like domain similar to that found in chondroitin sulfate proteoglycans (CSPGs) and human cartilage link protein (LP). Included in this group are the CSPGs aggrecan, versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue.
Probab=98.41 E-value=1e-06 Score=57.31 Aligned_cols=76 Identities=14% Similarity=0.176 Sum_probs=46.7
Q ss_pred CCCceEEEeeCCCCC------CCCeEEEeEcC------eEeccCCCceEEecCC--Ccc----ccccccccccccccccc
Q psy15128 212 SGETALLECGPPKGQ------PEPTLHWKKNG------QFIDLESSKRVSILGD--PWF----DSRRSRSIFGSVLGALS 273 (292)
Q Consensus 212 ~g~~~~l~C~~~~~~------p~~~~~W~~~g------~~~~~~~~~~~~~~~~--~~~----~~~~~~~l~i~~~~~~~ 273 (292)
.|++|+|.|.. ... ....|.|++.. ..+....+........ +.. ......+|.|..++..|
T Consensus 1 ~G~~V~L~C~~-~~~~~~~~~~~~~i~W~k~~~~~~~~~~v~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~~v~~sD 79 (106)
T cd05714 1 LGGNVTLPCRF-HLEPALSAPHGPRIKWTKLESDGAKEVDVLVAIGGRVKVYGSGRVRVPLYPADPGDASLVITDLRLED 79 (106)
T ss_pred CCCCEEEeEEe-ECCcccCCCCCcEEEEEEeCCCCCceEEEEEEcCCEEEEcCCCceEEEeeCCCCCcceEEECCCCHHH
Confidence 48999999996 443 24699999962 1121111111111100 000 01234579999999999
Q ss_pred cceeEEEEeeccccc
Q psy15128 274 DDQWKLIAKNIRNQQ 288 (292)
Q Consensus 274 ~g~y~C~a~n~~g~~ 288 (292)
+|.|.|.+.+..+..
T Consensus 80 ~G~Y~C~v~~~~~~~ 94 (106)
T cd05714 80 SGRYRCEVIDGIEDE 94 (106)
T ss_pred CEEEEEEEEcCCCce
Confidence 999999999876654
No 282
>cd04984 IgV_L_lambda Immunoglobulin (Ig) lambda light chain variable (V) domain. IgV_L_lambda: Immunoglobulin (Ig) light chain, lambda type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.
Probab=98.39 E-value=2e-06 Score=55.01 Aligned_cols=69 Identities=17% Similarity=0.305 Sum_probs=45.1
Q ss_pred EEecCCcEEEEEEEeee--CCCeeEEEECCe--E---EeeccC----CCcceeEEe---eecEEEEccCCCCCCeEEEEE
Q psy15128 47 KVGLNGIASFQCVAEGS--PLPSVFWTQEGS--Q---VLMFPG----NAYGHLHVT---QEGTLRIQGVQKEDAGFFVCS 112 (292)
Q Consensus 47 ~~~~g~~~~l~C~~~~~--~~~~v~W~~~~~--~---~~~~~~----~~~~~~~~~---~~~~l~i~~~~~~d~g~Y~C~ 112 (292)
.+.+|++++|.|.+.+. ....+.||+... . +..... ....+.... ....|+|.+++.+|+|.|.|.
T Consensus 2 ~v~~G~~v~l~C~~~~~~~~~~~i~Wy~q~~g~~~~~l~~~~~~~~~~~~~rf~~~~~~~~~~L~I~~~~~~Dsg~Y~C~ 81 (98)
T cd04984 2 SVSPGETVTITCTGSSGNISGNYVNWYQQKPGSAPRYLIYEDSDRPSGIPDRFSGSKSGNTASLTISGAQTEDEADYYCQ 81 (98)
T ss_pred ccCCCCCEEEEEEEcCCCcCCCCEEEEEECCCCCccEEEEeccccCCCCCCCEEEEccCCEEEEEECCCChhhCEEEEEE
Confidence 46789999999998764 455799998432 1 111110 111222222 233699999999999999999
Q ss_pred EEe
Q psy15128 113 ALS 115 (292)
Q Consensus 113 ~~~ 115 (292)
+.+
T Consensus 82 ~~~ 84 (98)
T cd04984 82 VWD 84 (98)
T ss_pred Ecc
Confidence 864
No 283
>PHA03270 envelope glycoprotein C; Provisional
Probab=98.36 E-value=0.00022 Score=56.12 Aligned_cols=104 Identities=18% Similarity=0.305 Sum_probs=66.8
Q ss_pred EEEEccCCCCCCeEEEEEEEeCCcCeeEEEEEEEEeecCCCCCeEEeCCCCceecCCCeEEEEeEeccC-CCC--ceEEE
Q psy15128 95 TLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVTSVEDTPPPIVQVGPSNQTLPLHSVAFLPCQAVGS-PPP--HIRWY 171 (292)
Q Consensus 95 ~l~i~~~~~~d~g~Y~C~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~-p~~--~~~W~ 171 (292)
.|.|..++...+|.|+-...+..+......++.|.. +.+|.+.+.+. .+..|+...-.|.+..+ |+- .+.||
T Consensus 183 ~L~I~slt~aTeGvY~Wr~~~~~~~~~~~~~VtV~~---yr~Psvsv~~~--PvL~Ge~Y~AtC~va~YYPp~Sv~lrWf 257 (466)
T PHA03270 183 RLVIQELTLATQGMYYWARGPADRPHRYGTWTRVRM---FRRPSLSIRPH--AVLEGEPFGATCVAANYYPGDRAAFRWF 257 (466)
T ss_pred eEEEEEcccccceEEEEEEecCCCceeeeeEEEEEE---ecCCcccccCC--ccccCCCceEEEEeeeecCCCceEEEEE
Confidence 499999999999999998776555444444444432 23555555433 46789999999999665 432 59999
Q ss_pred eCCeeCCCCC---ccEEEcCCCcEEEEeeecCCCC
Q psy15128 172 KNGNSLPPED---TRINVSSSGSLQIDVLRDDFRA 203 (292)
Q Consensus 172 ~~~~~l~~~~---~~~~~~~~~~l~i~~~~~~d~g 203 (292)
.|+.++.... .......++.-.++.++.++.+
T Consensus 258 ~ng~~V~~~~~i~~~~~~~~dGfs~vStvtsea~~ 292 (466)
T PHA03270 258 EGGDEVFAPERVRTRVDAQRDGFSATSTLTSEARA 292 (466)
T ss_pred eCCccccCcceeeeeeEecCCCeeEEEEEeccccc
Confidence 9999885321 1222334443455555555543
No 284
>PHA03269 envelope glycoprotein C; Provisional
Probab=98.36 E-value=0.0001 Score=58.70 Aligned_cols=206 Identities=18% Similarity=0.217 Sum_probs=108.0
Q ss_pred CcccCCcCCCeeEEEEEEecc-cc-cccccEEEEEeCCCcEEeCCCccEEecCCcEEEEEEEeeeCCC---eeEEEECCe
Q psy15128 1 MITEVKKSDEGKYQCYVQNMV-GE-RETKPALLTVHAPPSFVVRPQDQKVGLNGIASFQCVAEGSPLP---SVFWTQEGS 75 (292)
Q Consensus 1 ~i~~v~~~D~G~Y~C~~~~~~-~~-~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~---~v~W~~~~~ 75 (292)
.|.++...++|.|.=.+.+.. +. .....+.+.+..+|.+.+.+. .+.+|+...-.|.+..+.++ .+.|++++.
T Consensus 292 ~I~sltaATeGvY~Wrv~~~~n~t~~~~~~VtV~~yr~PsVsV~p~--PVL~Ge~YkAtC~vA~YYPp~SvrlrWf~ng~ 369 (566)
T PHA03269 292 HILSLDASTEGTYIWRVIHTANKNVINEHHITVMSYKRPNITVIGD--PVLLGNPYAAYCKVNKYYPPHSVIVKWTSNFG 369 (566)
T ss_pred EEeecccccCceEEEEEecCCCCceeeeeEEEEEEecCCCccccCC--ccccCCCceEEEEeeeecCCCceEEEEEeCCc
Confidence 378899999999985554322 11 223337778888887666554 47889999999999875332 689999988
Q ss_pred EEeeccCCCcceeE------EeeecEEEEccCCCCC--CeEEEEEEEeCCcCe-eEEEEEEEEeecCCCCCeEEeCCCCc
Q psy15128 76 QVLMFPGNAYGHLH------VTQEGTLRIQGVQKED--AGFFVCSALSVAGST-TVRAFLQVTSVEDTPPPIVQVGPSNQ 146 (292)
Q Consensus 76 ~~~~~~~~~~~~~~------~~~~~~l~i~~~~~~d--~g~Y~C~~~~~~~~~-~~~~~l~v~~~~~~~~~~~~~~~~~~ 146 (292)
.+.... ...... ++..+.|.+......| --..+|.+.-..... ....+-.+. ...++.|.+.+
T Consensus 370 ~V~~~~--it~t~~~~~dGlFSrVSTLtlp~~~~~d~~PPsLrCeV~W~RDsVS~tRfnAaat-P~VY~~PtISm----- 441 (566)
T PHA03269 370 NIGKNF--ITDAIKENADGLFSSVSALHIPAQKNADYPPPAIQCNVLWIRDGVSHMKYSAAVT-PDVYPFPNVSI----- 441 (566)
T ss_pred ccCccc--cccceeecCCCceEEEEEEeccCccccCCCCCCceEEEEEccCCchheecccccC-CccccCCeEEE-----
Confidence 764211 111111 2223345553322222 345799987432221 111111111 11123444433
Q ss_pred eecCCCeEEEEeEeccCCC--CceEEEeCCeeCCCCCccEE---EcCCCcEEEEeeecCCCCCCcceEEeCCCceEEEee
Q psy15128 147 TLPLHSVAFLPCQAVGSPP--PHIRWYKNGNSLPPEDTRIN---VSSSGSLQIDVLRDDFRAEPKDTRVASGETALLECG 221 (292)
Q Consensus 147 ~~~~g~~v~l~C~~~~~p~--~~~~W~~~~~~l~~~~~~~~---~~~~~~l~i~~~~~~d~g~~~~~~~~~g~~~~l~C~ 221 (292)
.+..|+ ..|.+.--|. ..+.|+-++........... ....|...|.+... .-..++.+..+|.
T Consensus 442 ~FedG~---AVCtA~CVP~~~V~l~WlVgD~p~~~~~t~itG~C~ehPGLVNLRS~~p---------LS~~dgpveYTCr 509 (566)
T PHA03269 442 EIIDGH---IVCLAKCVPRGVVHFNWWINDIPIEHENSEILGVCDNNKRFVNLQSSCD---------TSELDGPITYSCH 509 (566)
T ss_pred EEeCCE---EEEecccccCCCceEEEEecCCCCCCccceeeccCCCCCCceeeccccc---------ccccCCceeEEEE
Confidence 233333 3576654443 47899987766433221110 01122233332110 0112356889999
Q ss_pred CCCCCCCC
Q psy15128 222 PPKGQPEP 229 (292)
Q Consensus 222 ~~~~~p~~ 229 (292)
. .|+|..
T Consensus 510 L-~GYP~~ 516 (566)
T PHA03269 510 L-DGYPKK 516 (566)
T ss_pred E-eecCCC
Confidence 7 898854
No 285
>cd07706 IgV_TCR_delta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) delta chain. IgV_TCR_delta: immunoglobulin (Ig) variable (V) domain of the delta chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is
Probab=98.35 E-value=3.6e-06 Score=55.74 Aligned_cols=75 Identities=20% Similarity=0.335 Sum_probs=50.1
Q ss_pred eCCCccEEecCCcEEEEEEEeee-CCCeeEEEECC--eE-Ee-ec-----cCCCcceeEEe-----eecEEEEccCCCCC
Q psy15128 41 VRPQDQKVGLNGIASFQCVAEGS-PLPSVFWTQEG--SQ-VL-MF-----PGNAYGHLHVT-----QEGTLRIQGVQKED 105 (292)
Q Consensus 41 ~~~~~~~~~~g~~~~l~C~~~~~-~~~~v~W~~~~--~~-~~-~~-----~~~~~~~~~~~-----~~~~l~i~~~~~~d 105 (292)
..+..+.+.+|++++|.|.+... ....+.|+|.. .. .. .. ......++... ....|+|.+++.+|
T Consensus 4 q~~~~v~~~~G~~v~L~C~~~~~~~~~~v~Wyrq~~~~~~~~l~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~~~~~D 83 (116)
T cd07706 4 QAQPDVSVQVGEEVTLNCRYETSWTNYYIFWYKQLPSGEMTFLIRQKSIYGNATKGRYSVNFQKAQKSISLTISALQLED 83 (116)
T ss_pred EeCCceEEcCCCCEEEEEEEeCCCCceEEEEEEECCCCceEEEEEecCccCCccCCeEEEEEeccCCEEEEEECCCCHHH
Confidence 34556778899999999998653 44579999842 11 11 10 01112334332 13479999999999
Q ss_pred CeEEEEEEEe
Q psy15128 106 AGFFVCSALS 115 (292)
Q Consensus 106 ~g~Y~C~~~~ 115 (292)
+|.|.|.+..
T Consensus 84 sg~Y~C~~~~ 93 (116)
T cd07706 84 SAKYFCALST 93 (116)
T ss_pred CEEEEEEEEC
Confidence 9999999874
No 286
>cd07705 Ig2_Necl-1 Second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). Ig2_Necl-1: second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue and is important to the formation of synapses, axon bundles, and myel
Probab=98.34 E-value=6.6e-06 Score=50.59 Aligned_cols=66 Identities=18% Similarity=0.317 Sum_probs=43.5
Q ss_pred EEEEEEEeee-CCCeeEEEECCeEEeeccC---CCcceeEEeeecEEEEccCCCCCCeEEEEEEEeCCcC
Q psy15128 54 ASFQCVAEGS-PLPSVFWTQEGSQVLMFPG---NAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGS 119 (292)
Q Consensus 54 ~~l~C~~~~~-~~~~v~W~~~~~~~~~~~~---~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~~~ 119 (292)
+.|.|.+.+. |.+.|.|++++..+..... .......+...+.|.+.....++...|+|.+.+....
T Consensus 2 ~~LtC~a~g~~P~~~ItW~k~g~~l~~~~~~~~~~~~~~t~~~~s~l~~~~~~~d~g~~~tC~v~h~~l~ 71 (83)
T cd07705 2 AKLRCTSSGSKPAANIKWRKGDQELEGAPTSVLEDGNGKTFTVSSSVEFQVTREDDGAEITCSVGHESLH 71 (83)
T ss_pred EEEEEEecCccCCCEeEEEECCEECCCcceeEEECCCCCEEEEEEEEEEEecchhCCCEEEEEEECcccC
Confidence 6899999874 8889999999976531110 0000012233346777677777888999999987543
No 287
>cd05887 Ig1_Nectin-3_like First immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3) and similar proteins. Ig1_Nectin-3_like: domain similar to the first immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3). Nectin-3 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example, during spermatid development, the nectin-3,-2 trans-interaction is required for the formation of Sertoli cell-spermatid junctions in testis, and during morphogenesis of the ciliary body, the nectin-3,-1 trans-interaction is important for apex-apex adhesion between the pigment and non-pigment layers of the ciliary epithelia. Nectins also
Probab=98.33 E-value=1.8e-05 Score=49.83 Aligned_cols=77 Identities=17% Similarity=0.361 Sum_probs=49.0
Q ss_pred CcEEEEEEEeee-CCCeeEEEECC----eEEeecc---C-----CCcceeEE----eeecEEEEccCCCCCCeEEEEEEE
Q psy15128 52 GIASFQCVAEGS-PLPSVFWTQEG----SQVLMFP---G-----NAYGHLHV----TQEGTLRIQGVQKEDAGFFVCSAL 114 (292)
Q Consensus 52 ~~~~l~C~~~~~-~~~~v~W~~~~----~~~~~~~---~-----~~~~~~~~----~~~~~l~i~~~~~~d~g~Y~C~~~ 114 (292)
++++|.|..... ....|.|.|.. ..+.... + .-.++..+ ..+.+|.|.+++.+|+|.|+|.+.
T Consensus 1 ~~vtL~C~~~~~~~~~qV~W~k~~~~~~~~ia~y~~~~g~~~~~~y~~Rv~~~~~~~~d~sl~i~nv~~~D~G~Y~C~v~ 80 (96)
T cd05887 1 KNVTLKCRIQVNETITQSSWEKIHGKGSVTLAVHHPMYGISIQPDYQGRVSFKNYSLLDATIMLENVGFSDIGVYICKAV 80 (96)
T ss_pred CCEEEEEEecCCCcEEEEEEEEcCCCCcEEEEEEcccCCcccChhhCCcEEEcCCCCCccEEEEeCCCccccEEEEEEEE
Confidence 468999998643 23479998842 1221111 1 11123333 225689999999999999999986
Q ss_pred -eCCcCeeEEEEEEE
Q psy15128 115 -SVAGSTTVRAFLQV 128 (292)
Q Consensus 115 -~~~~~~~~~~~l~v 128 (292)
...|.......|.|
T Consensus 81 tfP~G~~~~~~~l~~ 95 (96)
T cd05887 81 TFPLGNTQSSTTVTV 95 (96)
T ss_pred eCCCCCeeEEEEEEE
Confidence 45666666666654
No 288
>cd05772 IgC_SIRP Signal-regulatory protein (SIRP) immunoglobulin-like domain. IgC_SIRP: Immunoglobulin-like domain of signal-regulatory proteins (SIRP); the signal-regulatory proteins (SIRP) are Ig-like cell surface receptors detected in hematopoietic and non-hematopoietic cells. While their extracellular domains are similar, SIRP are classified as alpha or beta based on the length of the intracytoplasmic domain. Those having a 110- to 113-amino acid tail are classified as SIRP-alpha, and those having a 5-amino acid tail as SIRP-beta. SIRP-alpha and SIRP-beta molecules are thought to have complementary roles in signal regulation: SIRP-alpha inhibit signalling via their immunoreceptor tyrosine (IT)-based inhibition motifs while SIRP-beta are activating. SIRP-beta lack the cytoplasmic domainof SIRP-alpha, and associate with at least one other transmembrane protein (DAP-12 or KARAP). The IT-based activation motifs within DAP-12's cytoplasmic domain may link SIRP-beta to the activating
Probab=98.32 E-value=1.4e-05 Score=51.93 Aligned_cols=76 Identities=16% Similarity=0.274 Sum_probs=46.3
Q ss_pred cEEecCCcEEEEEEEeee-CC-CeeEEEECCeEEeeccCCC--cce-eEEeeecEEEEccCCCCCCeEEEEEEEeCCcCe
Q psy15128 46 QKVGLNGIASFQCVAEGS-PL-PSVFWTQEGSQVLMFPGNA--YGH-LHVTQEGTLRIQGVQKEDAGFFVCSALSVAGST 120 (292)
Q Consensus 46 ~~~~~g~~~~l~C~~~~~-~~-~~v~W~~~~~~~~~~~~~~--~~~-~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~~~~ 120 (292)
.....|+.++|.|.+.++ |. ..++|+|||..+....... ... ..+...+.|.+.....++...|+|.+.+.....
T Consensus 16 ~~~~~g~~~tL~C~a~gF~P~~i~v~W~kng~~~~~~~~~~~p~~d~~ty~~~S~L~~~~~~~d~~~~ytC~V~H~~l~~ 95 (111)
T cd05772 16 GRANPGQSVNFTCSAHGFSPRDITVKWLKNGNELSAEQPNITPEGDSVSYNVTSTVQVKLTEDDVHSQVTCEVQHRTLQA 95 (111)
T ss_pred hccCCCCCEEEEEEEeeEeCCCCEEEEEECCEECcccccceeeCCCCCcEEEEEEEEEECccccccCceEEEEEeCCCCC
Confidence 345568889999999985 53 4899999998764211100 000 122334456666544443346999999875443
Q ss_pred e
Q psy15128 121 T 121 (292)
Q Consensus 121 ~ 121 (292)
.
T Consensus 96 p 96 (111)
T cd05772 96 P 96 (111)
T ss_pred C
Confidence 3
No 289
>cd05715 Ig_P0-like Immunoglobulin (Ig)-like domain of Protein zero (P0) and similar proteins. Ig_P0ex-like: domain similar to the immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an extracellular Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin. This group also contains the Ig domain of Sodium channel subunit beta-2
Probab=98.32 E-value=3.3e-06 Score=55.85 Aligned_cols=82 Identities=20% Similarity=0.294 Sum_probs=49.2
Q ss_pred CcceEEeCCCceEEEeeCCCCCC---CCeEEEeEcCe------Eec-cCCCceEEecCCCccc---------cccccccc
Q psy15128 205 PKDTRVASGETALLECGPPKGQP---EPTLHWKKNGQ------FID-LESSKRVSILGDPWFD---------SRRSRSIF 265 (292)
Q Consensus 205 ~~~~~~~~g~~~~l~C~~~~~~p---~~~~~W~~~g~------~~~-~~~~~~~~~~~~~~~~---------~~~~~~l~ 265 (292)
|..+.+.+|++++|.|......+ ...+.|++... .+. ...+...... .+.+. ......|.
T Consensus 5 p~~v~v~~G~~vtL~C~~s~~~~~~~~~~v~W~~~~~~~~~~~~v~~~~~~~~~~~~-~~~~~~R~~~~~~~~~~~~sL~ 83 (116)
T cd05715 5 PREVYAVNGSDVRLKCTFSSSEPISDDISVTWSFQPEGSGDTESIFHYHKGPYYPLK-DGRFKDRVEWVGNPSRKDASIV 83 (116)
T ss_pred CCeEEEEcCCCeEEEeEEeCCCCcCCceEEEEEEecCCCCCcEEEEEEcCCcccccc-CccccCcEEEecCCcCCeeEEE
Confidence 45678899999999998633322 24699987321 110 0111100000 11110 11224689
Q ss_pred cccccccccceeEEEEeecccc
Q psy15128 266 GSVLGALSDDQWKLIAKNIRNQ 287 (292)
Q Consensus 266 i~~~~~~~~g~y~C~a~n~~g~ 287 (292)
|..+..+|+|.|.|.+.|..+.
T Consensus 84 I~~v~~~D~G~Y~C~v~~~~~~ 105 (116)
T cd05715 84 IHNLQFTDNGTYTCDVKNPPDI 105 (116)
T ss_pred EeeCCcccCEEEEEEEEeCCCC
Confidence 9999999999999999988664
No 290
>cd07699 IgC_L Immunoglobulin Constant domain. IgC_L: Immunoglobulin (Ig) light chain constant (C) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.
Probab=98.31 E-value=4.3e-06 Score=53.45 Aligned_cols=73 Identities=15% Similarity=0.258 Sum_probs=46.8
Q ss_pred EEecCCcEEEEEEEeee-C-CCeeEEEECCeEEeeccCCC----cceeEEeeecEEEEccCCCCCCeEEEEEEEeCCcC
Q psy15128 47 KVGLNGIASFQCVAEGS-P-LPSVFWTQEGSQVLMFPGNA----YGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGS 119 (292)
Q Consensus 47 ~~~~g~~~~l~C~~~~~-~-~~~v~W~~~~~~~~~~~~~~----~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~~~ 119 (292)
....++.++|.|.+.|+ | ...+.|+++|..+....... .....+...+.|.+......+...|+|.+.+....
T Consensus 13 ~~~~~~~~~L~C~~~gfyP~~i~v~W~~~g~~~~~~~~~~~~~~~~dgty~~~s~L~v~~~~w~~~~~~sC~V~H~~l~ 91 (100)
T cd07699 13 ELEKSGKATLVCLINDFYPGFATVQWKVDGATVSSGVQTSTTEQQSDNTYSLSSYLTLTKSDWNKHKVYTCEVTHEGLS 91 (100)
T ss_pred HHccCCCcEEEEEEEeEECCCCEEEEEECCEECcccEeccccEECCCCCEEEEEEEEEcHHHhCCCCeEEEEEEecCCC
Confidence 44467889999999985 4 44789999998763110000 01112333446777666666678999999886543
No 291
>cd05884 Ig2_Necl-3 Second immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Ig2_Necl-3: second immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-3 has been shown to accumulate in tissues of the central and peripheral nervous system, where it is expressed in ependymal cells and myelinated axons. It is observed at the interface between the axon shaft and the myelin sheath. Ig domains are likely to participate in ligand binding and recognition.
Probab=98.31 E-value=6.6e-06 Score=50.51 Aligned_cols=66 Identities=14% Similarity=0.243 Sum_probs=44.5
Q ss_pred EEEEEEEee-eCCCeeEEEECCeEEeeccC---CCcceeEEeeecEEEEccCCCCCCeEEEEEEEeCCcC
Q psy15128 54 ASFQCVAEG-SPLPSVFWTQEGSQVLMFPG---NAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGS 119 (292)
Q Consensus 54 ~~l~C~~~~-~~~~~v~W~~~~~~~~~~~~---~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~~~ 119 (292)
++|.|.+.| +|...++|+|++..+..... .......+...+.|.+.....++...|+|++.+....
T Consensus 2 ~~LtC~a~gf~P~~~itW~kng~~l~~~~~~~~~~~~~~t~~~~s~L~~~~~~~d~g~~ytC~v~h~~l~ 71 (83)
T cd05884 2 MQLTCKTSGSKPAADIRWFKNDKEIKDVKYLKEEDANRKTFTVSSTLDFRVDRSDDGVAIICRVDHESLN 71 (83)
T ss_pred EEEEEEeCCccCCCEEEEEECCEECcCceeeEeeCCCCCEEEEEEEEEEEcccccCCCEEEEEEechhcC
Confidence 689999987 57789999999987531110 0011122334457888777777888999999886544
No 292
>cd05718 Ig1_PVR_like First immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155) and similar proteins. Ig1_PVR_like: domain similar to the first immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155). Poliovirus (PV) binds to its cellular receptor (PVR/CD155) to initiate infection. CD155 is a membrane-anchored, single-span glycoprotein; its extracellular region has three Ig-like domains. There are four different isotypes of CD155 (referred to as alpha, beta, gamma, and delta), that result from alternate splicing of the CD155 mRNA, and have identical extracellular domains. CD155-beta and - gamma, are secreted, CD155-alpha and delta are membrane-bound and function as PV receptors. The virus recognition site is contained in the amino-terminal domain, D1. Having the virus attachment site on the receptor distal from the plasma membrane, may be important for successful initiation of infection of cells by the virus. CD155 binds in the poliovirus "c
Probab=98.30 E-value=1.8e-06 Score=55.31 Aligned_cols=72 Identities=22% Similarity=0.200 Sum_probs=43.4
Q ss_pred CceEEEeeCCCCC--CCCeEEEeEcCe----Ee--c-cCC--------CceEEecCCCccccccccccccccccccccce
Q psy15128 214 ETALLECGPPKGQ--PEPTLHWKKNGQ----FI--D-LES--------SKRVSILGDPWFDSRRSRSIFGSVLGALSDDQ 276 (292)
Q Consensus 214 ~~~~l~C~~~~~~--p~~~~~W~~~g~----~~--~-~~~--------~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~ 276 (292)
++|+|.|...... ....+.|+|... .+ . ... ..++.+..... ....|.|..+...|+|.
T Consensus 1 ~~v~L~C~~~~~~~~~~~~v~W~k~~~~~~~~i~~~~~~~~~~~~~~~~~R~~~~~~~~----~~~sL~I~~v~~~D~G~ 76 (98)
T cd05718 1 ESVTLECSFPVPGPVQITQVTWMKITGGSKQNIAVFHPQYGISIPPSYEGRVSFLNSSL----EDATISISNLRLEDEGN 76 (98)
T ss_pred CCEEEEeEeeCCCCceEEEEEEeeECCCCCEEEEEEecCCCcccCcCcCceEEEeCCCC----CceEEEEccCCcccCEE
Confidence 5789999973322 244799999542 11 0 000 11122111110 23479999999999999
Q ss_pred eEEEEee-cccccc
Q psy15128 277 WKLIAKN-IRNQQQ 289 (292)
Q Consensus 277 y~C~a~n-~~g~~~ 289 (292)
|.|.+.+ ..|+..
T Consensus 77 Y~C~v~~~~~g~~~ 90 (98)
T cd05718 77 YICEFATFPQGNRQ 90 (98)
T ss_pred EEEEEEeCCCCcEE
Confidence 9999875 556554
No 293
>cd04984 IgV_L_lambda Immunoglobulin (Ig) lambda light chain variable (V) domain. IgV_L_lambda: Immunoglobulin (Ig) light chain, lambda type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.
Probab=98.30 E-value=2.4e-06 Score=54.69 Aligned_cols=70 Identities=16% Similarity=0.147 Sum_probs=44.7
Q ss_pred EEeCCCceEEEeeCCCCC--CCCeEEEeEcC---eE--ec-cCC------CceEEecCCCcccccccccccccccccccc
Q psy15128 209 RVASGETALLECGPPKGQ--PEPTLHWKKNG---QF--ID-LES------SKRVSILGDPWFDSRRSRSIFGSVLGALSD 274 (292)
Q Consensus 209 ~~~~g~~~~l~C~~~~~~--p~~~~~W~~~g---~~--~~-~~~------~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~ 274 (292)
.+.+|++++|.|.+ .+. ....+.|++.. .+ |. ... ..++....+ .....|.|..++..|+
T Consensus 2 ~v~~G~~v~l~C~~-~~~~~~~~~i~Wy~q~~g~~~~~l~~~~~~~~~~~~~rf~~~~~-----~~~~~L~I~~~~~~Ds 75 (98)
T cd04984 2 SVSPGETVTITCTG-SSGNISGNYVNWYQQKPGSAPRYLIYEDSDRPSGIPDRFSGSKS-----GNTASLTISGAQTEDE 75 (98)
T ss_pred ccCCCCCEEEEEEE-cCCCcCCCCEEEEEECCCCCccEEEEeccccCCCCCCCEEEEcc-----CCEEEEEECCCChhhC
Confidence 57899999999997 444 45679998832 11 11 000 112221111 1233689999999999
Q ss_pred ceeEEEEeec
Q psy15128 275 DQWKLIAKNI 284 (292)
Q Consensus 275 g~y~C~a~n~ 284 (292)
|.|.|.+.+.
T Consensus 76 g~Y~C~~~~~ 85 (98)
T cd04984 76 ADYYCQVWDS 85 (98)
T ss_pred EEEEEEEccC
Confidence 9999999753
No 294
>smart00407 IGc1 Immunoglobulin C-Type.
Probab=98.30 E-value=2.1e-06 Score=51.82 Aligned_cols=69 Identities=19% Similarity=0.068 Sum_probs=42.2
Q ss_pred eEEEeeCCCCCCC-CeEEEeEcCeEeccCC-CceEEecCCCccccccccccccccccccccceeEEEEeeccc
Q psy15128 216 ALLECGPPKGQPE-PTLHWKKNGQFIDLES-SKRVSILGDPWFDSRRSRSIFGSVLGALSDDQWKLIAKNIRN 286 (292)
Q Consensus 216 ~~l~C~~~~~~p~-~~~~W~~~g~~~~~~~-~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~a~n~~g 286 (292)
++|.|.|...+|+ ..+.|+++|+++.... ........++.+... ..|.+......+...|+|.|.+..-
T Consensus 2 ~~L~C~a~gf~P~~i~v~W~k~g~~~~~~~~~~~~~~~~~gt~~~~--s~L~v~~~~~~~~~~~tC~V~H~~~ 72 (75)
T smart00407 2 ATLVCLVSGFYPPDITVTWLRNGQEVTSGVSTTDPLKNSDGTYFLS--SYLTVSASTWESGDTYTCQVTHEGL 72 (75)
T ss_pred eEEEEEEEeEeCCCCEEEEEECCEECCCCEEECceEECCCCCEEEE--EEEEEccccCCCCCEEEEEEEEcCC
Confidence 6899999555676 5999999999753211 111222334444422 2444444455566799999987653
No 295
>cd05877 Ig_LP_like Immunoglobulin (Ig)-like domain of human cartilage link protein (LP). Ig_LP_like: immunoglobulin (Ig)-like domain similar to that that found in human cartilage link protein (LP). In cartilage, chondroitin-keratan sulfate proteoglycan (CSPG), aggrecan, forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes.
Probab=98.30 E-value=3.3e-06 Score=54.95 Aligned_cols=77 Identities=12% Similarity=0.074 Sum_probs=45.8
Q ss_pred CCCceEEEeeCCCCC------CCCeEEEeEcCe------EeccCCCceEEecC--CCcccc----ccccccccccccccc
Q psy15128 212 SGETALLECGPPKGQ------PEPTLHWKKNGQ------FIDLESSKRVSILG--DPWFDS----RRSRSIFGSVLGALS 273 (292)
Q Consensus 212 ~g~~~~l~C~~~~~~------p~~~~~W~~~g~------~~~~~~~~~~~~~~--~~~~~~----~~~~~l~i~~~~~~~ 273 (292)
.|++++|.|.. ... ....+.|+|... .+............ .+.... ....+|.|..+...|
T Consensus 1 ~G~~vtL~C~~-~~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~sL~I~~v~~~D 79 (106)
T cd05877 1 RGGNVTLPCRY-HYEPELSAPRKIRVKWTKLESDYLKEEDVLVAIGTRHKSYGSYQGRVFLRRAHDLDASLVITDLRLED 79 (106)
T ss_pred CCCcEEEEeEe-ECCCcCCCCccceEEEEEecCCCCeeEEEEEEcCcEEEeccCccCcEEecCCCCCcEEEEEccCChHH
Confidence 48999999986 333 234799998531 11100111000000 011111 113468999999999
Q ss_pred cceeEEEEeecccccc
Q psy15128 274 DDQWKLIAKNIRNQQQ 289 (292)
Q Consensus 274 ~g~y~C~a~n~~g~~~ 289 (292)
+|.|.|.+.+..|...
T Consensus 80 sG~Y~C~v~~~~~~~~ 95 (106)
T cd05877 80 YGRYRCEVIDGLEDES 95 (106)
T ss_pred CEEEEEEEEecccceE
Confidence 9999999999877654
No 296
>PF08205 C2-set_2: CD80-like C2-set immunoglobulin domain ; InterPro: IPR013162 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the C2-set type domains found in the T-cell antigen CD80, as well as in related proteins. CD80 (B7-1) is a glycoprotein expressed on antigen-presenting cells []. The shared ligands on CD80 and CD86 (B7-2) deliver the co-stimulatory signal through CD28 and CTLA-4 on T-cells, where CD28 augments the T-cell response and CTLA-4 attenuates it [].; PDB: 3S58_A 3O3U_N 3CJJ_A 3S59_A 2PF6_B 2PET_A 3ALP_A 3SKU_D 3U83_A 3U82_B ....
Probab=98.27 E-value=5.8e-06 Score=51.84 Aligned_cols=69 Identities=20% Similarity=0.348 Sum_probs=43.7
Q ss_pred CCcEEEEEEEe-eeCCCeeEEEECCeEEe---eccCCCcceeEEeeecEEEEccCCCCCCeEEEEEEEeCCcC
Q psy15128 51 NGIASFQCVAE-GSPLPSVFWTQEGSQVL---MFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGS 119 (292)
Q Consensus 51 g~~~~l~C~~~-~~~~~~v~W~~~~~~~~---~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~~~ 119 (292)
|+.+.|.|.+. ++|.+.+.|+.++..+. ...............+.|.+.....++...++|.+.+....
T Consensus 14 ~~~~~~~C~s~~~~P~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~S~l~~~~~~~~~~~~~~C~~~~~~~~ 86 (89)
T PF08205_consen 14 GEEVTLTCSSSGGYPPPQITWYLDGGPVVASNTTQSSSPDNGLFTVSSTLTLTPTREDHGKTLTCRASHPALS 86 (89)
T ss_dssp TEEEEEEEEEEEEBS-EEEEEEETTCEECEEEEEEEEETTTTTEEEEEEEEEETTGGGTTEEEEEEEEETTCC
T ss_pred ceEEEEEEEeCCeECCeEEEEEECCCceeeeeeeeeeccCCCcceEEEEEEEEcChHHCCeEEEEEEECCccC
Confidence 67999999765 47899999999987661 00000011111222346777766666777899999987543
No 297
>cd04982 IgV_TCR_gamma Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) gamma chain. IgV_TCR_gamma: immunoglobulin (Ig) variable (V) domain of the gamma chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is
Probab=98.27 E-value=4.6e-06 Score=55.23 Aligned_cols=79 Identities=11% Similarity=0.149 Sum_probs=48.9
Q ss_pred CcceEEeCCCceEEEeeCCCC--CCCCeEEEeEc--CeE----eccCCCceEEe---cCCCcccc---c--ccccccccc
Q psy15128 205 PKDTRVASGETALLECGPPKG--QPEPTLHWKKN--GQF----IDLESSKRVSI---LGDPWFDS---R--RSRSIFGSV 268 (292)
Q Consensus 205 ~~~~~~~~g~~~~l~C~~~~~--~p~~~~~W~~~--g~~----~~~~~~~~~~~---~~~~~~~~---~--~~~~l~i~~ 268 (292)
+....+.+|++++|.|.+ .+ .+...+.|++. |.. +.......... ...+.+.. . ....|.|..
T Consensus 5 p~~~~~~~G~~v~l~C~~-~~~~~~~~~v~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~ 83 (116)
T cd04982 5 QLSITREESKSVTISCKV-SGIDFSTTYIHWYRQKPGQALERLLYVSSTSTQRKLSGGTKNKFEARKDVGKSTSTLTIQN 83 (116)
T ss_pred CCeEEeCCCCCEEEEEEE-eCCCccccEEEEEEECCCCCCEEEEEEecCCCcEEeCcccCCCEEEEEECCCCEEEEEEEE
Confidence 356778899999999997 55 56779999994 211 11111000000 00111111 1 234689999
Q ss_pred ccccccceeEEEEeec
Q psy15128 269 LGALSDDQWKLIAKNI 284 (292)
Q Consensus 269 ~~~~~~g~y~C~a~n~ 284 (292)
++.+|+|.|.|.+...
T Consensus 84 ~~~~Dsg~Y~C~~~~~ 99 (116)
T cd04982 84 LEKEDSATYYCAYWES 99 (116)
T ss_pred CCHHHCEEEEEEEecC
Confidence 9999999999999753
No 298
>cd05847 IgC_CH2_IgE CH2 domain (second constant Ig domain of the heavy chain) in immunoglobulin E (IgE). IgC_CH2_IgE: The second constant domain of the heavy chain of immunoglobulin E (IgE). The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma, and mu, all consisting of a variable domain (VH) and three (in alpha, delta, and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). The different classes of antibodies vary in their heavy chains; the IgE class has the epsilon type. This domain (Cepsilon2) of IgE is in place of the flexible hinge region found in IgG.
Probab=98.25 E-value=1.4e-05 Score=50.34 Aligned_cols=70 Identities=11% Similarity=0.230 Sum_probs=45.2
Q ss_pred cCCcEEEEEEEeee-CC-CeeEEEECCeEEeeccC----CCcceeEEeeecEEEEccCCCCCCeEEEEEEEeCCcC
Q psy15128 50 LNGIASFQCVAEGS-PL-PSVFWTQEGSQVLMFPG----NAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGS 119 (292)
Q Consensus 50 ~g~~~~l~C~~~~~-~~-~~v~W~~~~~~~~~~~~----~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~~~ 119 (292)
..+.++|.|.+.|+ |. ..+.|++++..+..... .......+...+.|.+......+...|+|.+.+....
T Consensus 13 ~~~~~~L~C~a~gFyP~~I~vtW~~dg~~~~~~~~~s~~~~~~~~Ty~~~S~L~v~~~~w~~~~~ytC~V~H~~~~ 88 (94)
T cd05847 13 TSETIQLLCLISGYTPGTIEVEWLVDGQVATLVAASTAPQKEEGSTFSTTSELNVTQEDWKSGKTYTCKVTHQGTT 88 (94)
T ss_pred CCCCEEEEEEEEeEECCCCEEEEEECCEECcCceeecccEECCCCcEEEEEEEEEchHHhcCCCeEEEEEEECCee
Confidence 45678999999995 43 47899999886521100 0011113344556777766666778999999886543
No 299
>cd05716 Ig_pIgR Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR). Ig_pIgR: Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR). pIgR delivers dimeric IgA and pentameric IgM to mucosal secretions. Polymeric immunoglobulin (pIgs) are the first defense against pathogens and toxins. IgA and IgM can form polymers via an 18-residue extension at their c-termini referred to as the tailpiece. pIgR transports pIgs across mucosal epithelia into mucosal secretions. Human pIgR is a glycosylated type I transmembrane protein, comprised of a 620 residue extracellular region, a 23 residue transmembrane region, and a 103 residue cytoplasmic tail. The extracellular region contains five domains that share sequence similarity with Ig variable (v) regions.
Probab=98.25 E-value=8.2e-06 Score=52.20 Aligned_cols=71 Identities=21% Similarity=0.361 Sum_probs=46.5
Q ss_pred cEEecCCcEEEEEEEee-eCCCeeEEEECCeE----Eeecc----CCCcceeEEe-----eecEEEEccCCCCCCeEEEE
Q psy15128 46 QKVGLNGIASFQCVAEG-SPLPSVFWTQEGSQ----VLMFP----GNAYGHLHVT-----QEGTLRIQGVQKEDAGFFVC 111 (292)
Q Consensus 46 ~~~~~g~~~~l~C~~~~-~~~~~v~W~~~~~~----~~~~~----~~~~~~~~~~-----~~~~l~i~~~~~~d~g~Y~C 111 (292)
+.+.+|++++|.|.... .....+.|+|.... +.... .....+.... ....|+|.+++.+|+|.|.|
T Consensus 2 v~~~~G~~vtl~C~~~~~~~~~~~~W~r~~~~~~~~~l~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C 81 (98)
T cd05716 2 VTGELGGSVTIPCPYPPKNRSYEKYWCKWGSAGCCLIIVSEGSVQSQYEGRVSLTDDPDNGVFTVTLNQLRKEDAGWYWC 81 (98)
T ss_pred EEEEeCCeEEEEeeCCCCCCCcEeEeECCCCCCCCeEEECCCccccccCCCEEEEecCCCCEEEEEEcCCCHHHCEEEEE
Confidence 35778999999998865 34557899985421 11100 1112233332 22379999999999999999
Q ss_pred EEEeC
Q psy15128 112 SALSV 116 (292)
Q Consensus 112 ~~~~~ 116 (292)
.+...
T Consensus 82 ~~~~~ 86 (98)
T cd05716 82 GVGDD 86 (98)
T ss_pred EcccC
Confidence 98754
No 300
>cd05712 Ig_Siglec_N Immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins). Ig_Siglec_N: immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins). Siglec refers to a structurally related protein family that specifically recognizes sialic acid in oligosaccharide chains of glycoproteins and glycolipids. Siglecs are type I transmembrane proteins, organized as an extracellular module composed of Ig-like domains (an N-terminal variable set of Ig-like carbohydrate recognition domains, and 1 to 16 constant Ig-like domains), followed by transmembrane and short cytoplasmic domains. Human siglecs are classified into two subgroups, one subgroup is comprised of sialoadhesin (Siglec-1), CD22 (Siglec-2), and MAG, the other subgroup is comprised of CD33-related Siglecs which include CD33 (Siglec-3) and human Siglecs 5-11.
Probab=98.23 E-value=9.5e-06 Score=53.90 Aligned_cols=75 Identities=15% Similarity=0.135 Sum_probs=48.2
Q ss_pred CCCccEEecCCcEEEEEEEeeeC------CCeeEEEECCeE-----Eee-cc------CCCcceeEEe-----eecEEEE
Q psy15128 42 RPQDQKVGLNGIASFQCVAEGSP------LPSVFWTQEGSQ-----VLM-FP------GNAYGHLHVT-----QEGTLRI 98 (292)
Q Consensus 42 ~~~~~~~~~g~~~~l~C~~~~~~------~~~v~W~~~~~~-----~~~-~~------~~~~~~~~~~-----~~~~l~i 98 (292)
.|..+.+.+|+.++|.|.+.... ...+.|++.... +.. .. ....+++... .+..|.|
T Consensus 5 ~P~~v~~~~G~~VtL~C~f~~~~~~~~~~~~~~~Wykq~~g~~~~~~~~~~~~~~~~~~~f~gR~~~~~~~~~~~~sL~I 84 (119)
T cd05712 5 MPKSVSVQEGLCVLIPCSFSYPADWPVSNGVHGIWYKGHPYPKNRPPVATNNRSRLVHESTRGRFRLLGDLGKKNCSLLI 84 (119)
T ss_pred CCCEEEEeccccEEEEEEeeCcccccCCCceEEEEEeCCCCCCCCCcEEEcCCCccccccccccEEEecCCCCCEEEEEE
Confidence 34556788999999999875321 235899985321 111 01 0111333331 1347999
Q ss_pred ccCCCCCCeEEEEEEEeC
Q psy15128 99 QGVQKEDAGFFVCSALSV 116 (292)
Q Consensus 99 ~~~~~~d~g~Y~C~~~~~ 116 (292)
.+++.+|+|.|.|.+...
T Consensus 85 ~~l~~~Dsg~Y~C~~~~~ 102 (119)
T cd05712 85 SDAQPEDSGKYFFRVELG 102 (119)
T ss_pred ccCChhhCeEEEEEEEcC
Confidence 999999999999998653
No 301
>cd05711 Ig_FcalphaRI Immunoglobulin (IG)-like domain of of FcalphaRI. IG_FcalphaRI : immunoglobulin (IG)-like domain of of FcalphaRI. FcalphaRI (CD89) is an IgA-specific receptor that is expressed on monocytes, eosinophils, neutrophils and macrophages. FcalphaRI mediates IgA-induced immune effector responses such as phagocytosis, antibody-dependent cell-mediated cytotoxicity and respiratory burst. Both monomeric and dimeric IgA can bind to FcalphaRI, and monomeric or dimeric IgA immune complexes can activate phagocytosis and other immune responses through the clustering of FcalphaRI. The Fc RI ectodomain is comprised of two Ig-like domains oriented at about 90 degree to each another.
Probab=98.23 E-value=4.6e-06 Score=52.73 Aligned_cols=67 Identities=13% Similarity=0.115 Sum_probs=44.6
Q ss_pred ceEEeCCCceEEEeeCCCCCCCCeEEEeEcCeEeccCCCceEEecCCCccccccccccccccccccccceeEEEEe
Q psy15128 207 DTRVASGETALLECGPPKGQPEPTLHWKKNGQFIDLESSKRVSILGDPWFDSRRSRSIFGSVLGALSDDQWKLIAK 282 (292)
Q Consensus 207 ~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~a~ 282 (292)
...+..|++|+|.|.. .. +...|.|+|+|..... ... ... ........+.|..+...|+|.|+|...
T Consensus 9 ~~vV~~G~~VTL~C~~-~~-~~~~f~l~k~g~~~~~-----~~~-~~~-~~~~~~a~f~I~~~~~~~~G~Y~C~~~ 75 (94)
T cd05711 9 SPVVPSGENVTLQCHS-DI-RFDRFILYKEGRSKPV-----LHL-YEK-HHGGFQASFPLGPVTPAHAGTYRCYGS 75 (94)
T ss_pred CCccCCCCeEEEEEec-CC-CCCEEEEEECCCCCCc-----eec-ccc-cCCeEEEEEEecCCCcccCEEEEEEEE
Confidence 4567899999999985 32 5568999998864321 000 000 001122257899999999999999974
No 302
>cd07700 IgV_CD8_beta Immunoglobulin (Ig) like domain of CD8 beta chain. IgV_CD8_beta: immunoglobulin (Ig)-like domain in CD8 beta. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alpha/alpha or alpha/beta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a V-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain.
Probab=98.23 E-value=1.2e-05 Score=52.37 Aligned_cols=68 Identities=22% Similarity=0.405 Sum_probs=43.6
Q ss_pred EEecCCcEEEEEEEeee-CCCeeEEEECCeE-----E----eeccC--------CCcceeEEe--e---ecEEEEccCCC
Q psy15128 47 KVGLNGIASFQCVAEGS-PLPSVFWTQEGSQ-----V----LMFPG--------NAYGHLHVT--Q---EGTLRIQGVQK 103 (292)
Q Consensus 47 ~~~~g~~~~l~C~~~~~-~~~~v~W~~~~~~-----~----~~~~~--------~~~~~~~~~--~---~~~l~i~~~~~ 103 (292)
.+.+|++++|.|.+.+. ....+.|||.... + ..... ....+.... . ...|+|.+++.
T Consensus 2 ~v~~G~~vtL~C~~~~~~~~~~~~Wyrq~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~I~~~~~ 81 (107)
T cd07700 2 LVQTNNTVKLSCEAKGISENTRIYWLRWRQAPKDSHFEFLALWSPLGGATYGEEVSQEKFSIRVTSDSSRYRLHINRVKP 81 (107)
T ss_pred EEcCCCCEEEEEEEecCCCCCeEEEEEECCCCCCCccEEEEEEcCCCCeEEccccccCcEEEEEECCCCEEEEEECCCCH
Confidence 46789999999998653 3447999985321 0 00000 001222221 1 23699999999
Q ss_pred CCCeEEEEEEE
Q psy15128 104 EDAGFFVCSAL 114 (292)
Q Consensus 104 ~d~g~Y~C~~~ 114 (292)
+|+|.|.|...
T Consensus 82 ~Dsg~YyCa~~ 92 (107)
T cd07700 82 EDSGTYFCMTV 92 (107)
T ss_pred HHCEEEEEeEc
Confidence 99999999975
No 303
>cd05847 IgC_CH2_IgE CH2 domain (second constant Ig domain of the heavy chain) in immunoglobulin E (IgE). IgC_CH2_IgE: The second constant domain of the heavy chain of immunoglobulin E (IgE). The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma, and mu, all consisting of a variable domain (VH) and three (in alpha, delta, and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). The different classes of antibodies vary in their heavy chains; the IgE class has the epsilon type. This domain (Cepsilon2) of IgE is in place of the flexible hinge region found in IgG.
Probab=98.22 E-value=3e-06 Score=53.30 Aligned_cols=76 Identities=16% Similarity=0.121 Sum_probs=45.8
Q ss_pred CCCceEEEeeCCCCCCC-CeEEEeEcCeEeccC-CCceEEecCCCccccccccccccccccccccceeEEEEeecccccc
Q psy15128 212 SGETALLECGPPKGQPE-PTLHWKKNGQFIDLE-SSKRVSILGDPWFDSRRSRSIFGSVLGALSDDQWKLIAKNIRNQQQ 289 (292)
Q Consensus 212 ~g~~~~l~C~~~~~~p~-~~~~W~~~g~~~~~~-~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~a~n~~g~~~ 289 (292)
.++.++|.|.|...+|. ..++|.++|+.+... .........++.|... ..|.+..-...+...|+|.+........
T Consensus 13 ~~~~~~L~C~a~gFyP~~I~vtW~~dg~~~~~~~~~s~~~~~~~~Ty~~~--S~L~v~~~~w~~~~~ytC~V~H~~~~~~ 90 (94)
T cd05847 13 TSETIQLLCLISGYTPGTIEVEWLVDGQVATLVAASTAPQKEEGSTFSTT--SELNVTQEDWKSGKTYTCKVTHQGTTFE 90 (94)
T ss_pred CCCCEEEEEEEEeEECCCCEEEEEECCEECcCceeecccEECCCCcEEEE--EEEEEchHHhcCCCeEEEEEEECCeeee
Confidence 45668999999555665 589999999987422 1112223334433322 2333333333345699999998776544
No 304
>cd05713 Ig_MOG_like Immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG). Ig_MOG_like: immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG). MOG, a minor component of the myelin sheath, is an important CNS-specific autoantigen, linked to the pathogenesis of multiple sclerosis (MS) and experimental autoimmune encephalomyelitis (EAE). It is a transmembrane protein having an extracellular Ig domain. MOG is expressed in the CNS on the outermost lamellae of the myelin sheath, and on the surface of oligodendrocytes, and may participate in the completion, compaction, and/or maintenance of myelin. This group also includes butyrophilin (BTN). BTN is the most abundant protein in bovine milk-fat globule membrane (MFGM).
Probab=98.22 E-value=3.2e-06 Score=54.34 Aligned_cols=27 Identities=4% Similarity=-0.114 Sum_probs=23.6
Q ss_pred cccccccccccccceeEEEEeeccccc
Q psy15128 262 RSIFGSVLGALSDDQWKLIAKNIRNQQ 288 (292)
Q Consensus 262 ~~l~i~~~~~~~~g~y~C~a~n~~g~~ 288 (292)
.+|.|..+...|+|.|+|.+.|..|.+
T Consensus 65 ~sL~I~~v~~~D~G~Y~C~v~~~~~~~ 91 (100)
T cd05713 65 VALRIHNVRASDEGLYTCFFQSDGFYE 91 (100)
T ss_pred EEEEEEcCChhhCEEEEEEEecCCcEE
Confidence 468999999999999999999877654
No 305
>PHA03270 envelope glycoprotein C; Provisional
Probab=98.21 E-value=0.00034 Score=55.07 Aligned_cols=204 Identities=17% Similarity=0.205 Sum_probs=108.8
Q ss_pred cccCCcCCCeeEEEEEEecccc-cccccEEEEEeCCCcEEeCCCccEEecCCcEEEEEEEeeeCCC---eeEEEECCeEE
Q psy15128 2 ITEVKKSDEGKYQCYVQNMVGE-RETKPALLTVHAPPSFVVRPQDQKVGLNGIASFQCVAEGSPLP---SVFWTQEGSQV 77 (292)
Q Consensus 2 i~~v~~~D~G~Y~C~~~~~~~~-~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~---~v~W~~~~~~~ 77 (292)
|..++.+.+|.|+=...+..+. ...+.+.+....+|.+.+.+. .+.+|+...-.|.+..+.++ .+.|++++..+
T Consensus 186 I~slt~aTeGvY~Wr~~~~~~~~~~~~~VtV~~yr~Psvsv~~~--PvL~Ge~Y~AtC~va~YYPp~Sv~lrWf~ng~~V 263 (466)
T PHA03270 186 IQELTLATQGMYYWARGPADRPHRYGTWTRVRMFRRPSLSIRPH--AVLEGEPFGATCVAANYYPGDRAAFRWFEGGDEV 263 (466)
T ss_pred EEEcccccceEEEEEEecCCCceeeeeEEEEEEecCCcccccCC--ccccCCCceEEEEeeeecCCCceEEEEEeCCccc
Confidence 6788899999999887665443 223336677777888766654 37889999999999875333 68999999876
Q ss_pred eeccCCCcceeEEe-----eecEEEEccCCCC-CCeEEEEEEEeCCcCe-eEEEEEEEEeecCCCCCeEEeCCCCceecC
Q psy15128 78 LMFPGNAYGHLHVT-----QEGTLRIQGVQKE-DAGFFVCSALSVAGST-TVRAFLQVTSVEDTPPPIVQVGPSNQTLPL 150 (292)
Q Consensus 78 ~~~~~~~~~~~~~~-----~~~~l~i~~~~~~-d~g~Y~C~~~~~~~~~-~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~ 150 (292)
..... ........ ..+.|++...... ..-..+|.+.-..... ....+-.+. ...++.|.+.+ .+..
T Consensus 264 ~~~~~-i~~~~~~~~dGfs~vStvtsea~~~~~~PPsLrC~v~W~rd~vS~sR~nAa~~-P~VY~~P~Isv-----~F~d 336 (466)
T PHA03270 264 FAPER-VRTRVDAQRDGFSATSTLTSEARAGLAPPRNLTCEFTWHRDSVSFSRRNATGA-PTVLPRPTIEM-----EFGG 336 (466)
T ss_pred cCcce-eeeeeEecCCCeeEEEEEeccccccCCCCCCceEEEEEccCCccceeeccccc-CccccCCeEEE-----EEeC
Confidence 32111 11111111 2223444333221 1236899987432222 111111111 11123444433 2223
Q ss_pred CCeEEEEeEeccCC-CCceEEEeCCeeCCCCCccEE----EcCCCcEEEEeeecCCCCCCcceEEeCCCceEEEeeCCCC
Q psy15128 151 HSVAFLPCQAVGSP-PPHIRWYKNGNSLPPEDTRIN----VSSSGSLQIDVLRDDFRAEPKDTRVASGETALLECGPPKG 225 (292)
Q Consensus 151 g~~v~l~C~~~~~p-~~~~~W~~~~~~l~~~~~~~~----~~~~~~l~i~~~~~~d~g~~~~~~~~~g~~~~l~C~~~~~ 225 (292)
|+ ..|.+.--| ...+.|+-++......+..+. ....+...|.+... +.. +.+..+|.. .|
T Consensus 337 G~---AVCtA~CVPegV~l~W~V~D~~~pa~~~~v~~G~C~~~PGlvNlrS~~p----------lSd-~~~eYTCrl-~G 401 (466)
T PHA03270 337 DE---AVCTAACVPEGVTLAWLLGADPAPAEKAAVAGGPCPGRPGLARVRSALP----------LSR-EHSEYTCRL-VG 401 (466)
T ss_pred CE---EEEeccccCCCCEEEEEecCCCCCCccceeecccCCCCCCceeeecccc----------ccc-CCceEEEEE-ee
Confidence 33 356654433 457999987766544322111 11223334433211 111 347899997 89
Q ss_pred CCCC
Q psy15128 226 QPEP 229 (292)
Q Consensus 226 ~p~~ 229 (292)
+|..
T Consensus 402 YP~~ 405 (466)
T PHA03270 402 YPAT 405 (466)
T ss_pred cCCC
Confidence 8855
No 306
>cd05766 IgC_MHC_II_beta Class II major histocompatibility complex (MHC) beta chain immunoglobulin domain. IgC_MHC_II_beta: Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class II beta chain. MHC class II molecules play a key role in the initiation of the antigen-specific immune reponse. In both humans and in mice these molecules have been shown to be expressed constitutively on the cell surface of professional antigen-presenting cells (APCs), for example on B-lymphocytes, monocytes, and macrophages. The expression of these molecules has been shown to be induced in nonprofessional APCs such as keratinocyctes, and they are expressed on the surface of activated human T cells and on T cells from other species. The MHC II molecules present antigenic peptides to CD4(+) T-lymphocytes. These peptides derive mostly from protelytic processing via the endocytic pathway, of antigens internalized by the APC. These peptides bind to the MHC class II molecules in the endosome be
Probab=98.21 E-value=6.5e-06 Score=51.91 Aligned_cols=72 Identities=21% Similarity=0.149 Sum_probs=46.0
Q ss_pred eCCCceEEEeeCCCCCCCC-eEEEeEcCeEeccC-CCceEEecCCCccccccccccccccccccccceeEEEEeecccc
Q psy15128 211 ASGETALLECGPPKGQPEP-TLHWKKNGQFIDLE-SSKRVSILGDPWFDSRRSRSIFGSVLGALSDDQWKLIAKNIRNQ 287 (292)
Q Consensus 211 ~~g~~~~l~C~~~~~~p~~-~~~W~~~g~~~~~~-~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~a~n~~g~ 287 (292)
..|+.++|.|.|...+|.. .+.|+++|+.+... .........++.|.... .|. +...+...|+|.+......
T Consensus 12 ~~~~~~~L~C~~~gFyP~~i~v~W~~~g~~~~~~~~~~~~~~~~dgTy~~~s--~L~---~~~~~~~~ysC~V~H~~l~ 85 (94)
T cd05766 12 SLSHPHLLVCHVWGFYPPEITVKWFKNGQEETEGVVSTELIPNGDWTYQILV--MLE---TTPSRGDTYTCVVEHSSLQ 85 (94)
T ss_pred cCCCCeEEEEEEeeecCCCCEEEEEECCeecCCCceecceEECCCCcEEEEE--EEE---EcCCCCCEEEEEEEeCCCC
Confidence 4688899999995557766 89999999987532 12233334444444332 222 2334556999999986544
No 307
>PHA03273 envelope glycoprotein C; Provisional
Probab=98.20 E-value=0.00045 Score=54.95 Aligned_cols=206 Identities=17% Similarity=0.144 Sum_probs=107.9
Q ss_pred cccCCcCCCeeEEEEEEecccccccc-cEEEEEeCCCcEEeCCCccEEecCCcEEEEEEEeeeCCC---eeEEEECCeEE
Q psy15128 2 ITEVKKSDEGKYQCYVQNMVGERETK-PALLTVHAPPSFVVRPQDQKVGLNGIASFQCVAEGSPLP---SVFWTQEGSQV 77 (292)
Q Consensus 2 i~~v~~~D~G~Y~C~~~~~~~~~~~~-~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~---~v~W~~~~~~~ 77 (292)
|..++..++|.|+=.+.+..+..... .+.+....+|.+.+.+. .+.+|+...-.|.+..+.++ .+.|++++..+
T Consensus 202 I~sltaaTeGvYtWr~~~~n~t~~~~~~VtV~~yr~Psvsv~~~--PvL~Ge~y~A~C~aa~YYPp~Sv~~rWf~dg~~V 279 (486)
T PHA03273 202 IKSVDWRTAGVYVWSLYAKNGTLVNSTSVTVSTYNAPLVDLSVH--PSLKGENYRAVCVVASYFPHSSVKLRWYKNAKEV 279 (486)
T ss_pred EEecchhhceEEEEEEecCCCceeeeeEEEEEEecCCcccccCC--ccccCCCceEEEEeeeecCCCceEEEEEeCCeec
Confidence 67889999999986654544432222 24555577887766654 47889999999999875332 69999999876
Q ss_pred eeccCCCccee-----EEeeecEEEEccCCC-CCCeEEEEEEEeCCcC-eeEEEEEEEEeecCCCCCeEEeCCCCceecC
Q psy15128 78 LMFPGNAYGHL-----HVTQEGTLRIQGVQK-EDAGFFVCSALSVAGS-TTVRAFLQVTSVEDTPPPIVQVGPSNQTLPL 150 (292)
Q Consensus 78 ~~~~~~~~~~~-----~~~~~~~l~i~~~~~-~d~g~Y~C~~~~~~~~-~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~ 150 (292)
........... .+...+.|++..... +..-..+|.+.-.... ......-.+. ...++.|.+.+ .+..
T Consensus 280 ~~~~~~~~~~~~~~~gl~T~vStlt~~~~~~~~~PP~lrC~v~W~rd~vS~~RfsAt~~-P~Vy~~P~Is~-----~F~~ 353 (486)
T PHA03273 280 DFTKYVTNASSVWVDGLITRISTLSIPVDPDEEYTPSLRCSIEWYRDEVSFARIAKAGT-PSVFVAPTVSV-----TVED 353 (486)
T ss_pred cccccceeeEEEecCCceEEEEEEeccCcccCCCCCCceEEEEEccCCcceeecccccc-CccccCCeEEE-----EEeC
Confidence 41111111111 112233455555332 3334689998743222 2211111111 11123444433 2223
Q ss_pred CCeEEEEeEeccCCC--CceEEEeCCeeCCCCCcc-E----EEcCCCcEEEEeeecCCCCCCcceEEeCCCceEEEeeCC
Q psy15128 151 HSVAFLPCQAVGSPP--PHIRWYKNGNSLPPEDTR-I----NVSSSGSLQIDVLRDDFRAEPKDTRVASGETALLECGPP 223 (292)
Q Consensus 151 g~~v~l~C~~~~~p~--~~~~W~~~~~~l~~~~~~-~----~~~~~~~l~i~~~~~~d~g~~~~~~~~~g~~~~l~C~~~ 223 (292)
|+ ..|.+.--|. ..+.|+-++ .++..... . -....+...|.+... .-...+.+..+|..
T Consensus 354 G~---AVCtA~CVP~egV~l~W~v~D-~~p~a~~~~~~tG~C~~~PglvNlrS~~p---------ls~~dgp~eYTCrl- 419 (486)
T PHA03273 354 GD---AVCTAKCVPSTGVFVSWSVND-HLPGVPSQDMTTGVCSSHPGLVNMQSRRP---------LSEENGEREYSCII- 419 (486)
T ss_pred CE---EEEecccccCCCeeEEEEccC-CCCCCcccccccccCCCCCCceeeecccc---------ccccCCceeEEEEE-
Confidence 33 3577655544 679999766 22211111 0 011122333433210 01123667899997
Q ss_pred CCCCCC
Q psy15128 224 KGQPEP 229 (292)
Q Consensus 224 ~~~p~~ 229 (292)
.|+|..
T Consensus 420 ~GYP~~ 425 (486)
T PHA03273 420 EGYPDG 425 (486)
T ss_pred eecCCC
Confidence 898855
No 308
>cd05719 Ig2_PVR_like Second immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155) and similar proteins. Ig2_PVR_like: domain similar to the second immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155). Poliovirus (PV) binds to its cellular receptor (PVR/CD155) to initiate infection. CD155 is a membrane-anchored, single-span glycoprotein; its extracellular region has three Ig-like domains. There are four different isotypes of CD155 (referred to as alpha, beta, gamma, and delta), these result from alternate splicing of the CD155 mRNA, and have identical extracellular domains. CD155-beta and - gamma, are secreted, CD155-alpha and delta are membrane-bound and function as PV receptors. The virus recognition site is contained in the amino-terminal domain, D1. Having the virus attachment site on the receptor distal from the plasma membrane may be important for successful initiation of infection of cells by the virus. CD155 binds in the poliovirus
Probab=98.20 E-value=1.1e-05 Score=50.80 Aligned_cols=77 Identities=13% Similarity=0.176 Sum_probs=46.3
Q ss_pred CCcEEEEEEE-eeeCCCeeEEEECCeEEeeccCCCcceeEEeeecEEEEccCCCCCCeEEEEEEEeCCcCeeEEEEEE
Q psy15128 51 NGIASFQCVA-EGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQ 127 (292)
Q Consensus 51 g~~~~l~C~~-~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~~~~~~~~~l~ 127 (292)
.....+.|.+ .|.|.+.|.|+++....................+.|.+.....+|...|+|++.+..........+.
T Consensus 15 ~~~~va~C~s~~gkP~a~ItW~~~~~~~~~~~~~~~~~g~~tv~S~l~~~p~~~d~G~~~tC~v~h~~l~~~~~~~~~ 92 (95)
T cd05719 15 EPVTVATCVSANGKPPATISWETTLGGEAETQSKENPNGTVTVTSEYRLVPSREANGKELTCVVSHPTLQEPQRFSVT 92 (95)
T ss_pred CccEEEEEECCCCcCCCEEEEEeCCCCcceeEeecCCCCCEEEEEEEEEecCHHHCCCEEEEEEeCcccCCCeEEEEE
Confidence 3456889988 4689999999997211110000011111233345788877777777789999998765554444433
No 309
>cd07698 IgC_MHC_I_alpha3 Class I major histocompatibility complex (MHC) alpha chain immunoglobulin domain. IgC_MHC_I_alpha3; Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class I alpha chain. Class I MHC proteins bind antigenic peptide fragments and present them to CD8+ T lymphocytes. Class I molecules consist of a transmembrane alpha chain and a small chain called the beta2 microglobulin. The alpha chain contains three extracellular domains, two of which fold together to form the peptide-binding cleft (alpha1 and alpha2), and one which has an Ig fold (alpha3). Peptide binding to class I molecules occurs in the endoplasmic reticulum (ER) and involves both chaperones and dedicated factors to assist in peptide loading. Class I MHC molecules are expressed on most nucleated cells.
Probab=98.20 E-value=3.9e-05 Score=48.42 Aligned_cols=66 Identities=21% Similarity=0.301 Sum_probs=39.3
Q ss_pred CCcEEEEEEEeee-CCC-eeEEEECCeEEeeccCC-C---cceeEEeeecEEEEccCCCCCCeEEEEEEEeCCcC
Q psy15128 51 NGIASFQCVAEGS-PLP-SVFWTQEGSQVLMFPGN-A---YGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGS 119 (292)
Q Consensus 51 g~~~~l~C~~~~~-~~~-~v~W~~~~~~~~~~~~~-~---~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~~~ 119 (292)
++.++|.|.+.|+ |.. .+.|++++......... . .....+...+.|.+.. .+.+.|+|.+.+....
T Consensus 14 ~~~~~L~C~a~gF~P~~i~v~W~~~g~~~~~~~~~~~~~~~~d~ty~~~s~l~v~~---~~~~~ytC~V~H~~~~ 85 (93)
T cd07698 14 DGSLTLSCHATGFYPRDIEVTWLRDGEDSVDDVESGEILPNGDGTYQLWVTLEVPP---EDKARYSCRVEHSGLK 85 (93)
T ss_pred CCcEEEEEEEEEEeCCCcEEEEEECCEECcccccccceEECCCCeEEEEEEEEECC---CCCCEEEEEEEeCCCC
Confidence 6789999999996 443 89999998532111000 0 0111122223444443 4778999999876543
No 310
>cd05716 Ig_pIgR Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR). Ig_pIgR: Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR). pIgR delivers dimeric IgA and pentameric IgM to mucosal secretions. Polymeric immunoglobulin (pIgs) are the first defense against pathogens and toxins. IgA and IgM can form polymers via an 18-residue extension at their c-termini referred to as the tailpiece. pIgR transports pIgs across mucosal epithelia into mucosal secretions. Human pIgR is a glycosylated type I transmembrane protein, comprised of a 620 residue extracellular region, a 23 residue transmembrane region, and a 103 residue cytoplasmic tail. The extracellular region contains five domains that share sequence similarity with Ig variable (v) regions.
Probab=98.20 E-value=5.7e-06 Score=52.93 Aligned_cols=75 Identities=17% Similarity=0.137 Sum_probs=46.9
Q ss_pred eEEeCCCceEEEeeCCCCCCCCeEEEeEcCe-----Eec------cCCCceEEecCCCccccccccccccccccccccce
Q psy15128 208 TRVASGETALLECGPPKGQPEPTLHWKKNGQ-----FID------LESSKRVSILGDPWFDSRRSRSIFGSVLGALSDDQ 276 (292)
Q Consensus 208 ~~~~~g~~~~l~C~~~~~~p~~~~~W~~~g~-----~~~------~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~ 276 (292)
+.+.+|++++|.|..........+.|++... .+. .....++.+..+. ......|.|..++.+|+|.
T Consensus 2 v~~~~G~~vtl~C~~~~~~~~~~~~W~r~~~~~~~~~l~~~~~~~~~~~~r~~~~~~~---~~~~~~L~I~~v~~~DsG~ 78 (98)
T cd05716 2 VTGELGGSVTIPCPYPPKNRSYEKYWCKWGSAGCCLIIVSEGSVQSQYEGRVSLTDDP---DNGVFTVTLNQLRKEDAGW 78 (98)
T ss_pred EEEEeCCeEEEEeeCCCCCCCcEeEeECCCCCCCCeEEECCCccccccCCCEEEEecC---CCCEEEEEEcCCCHHHCEE
Confidence 4678999999999973334556889998531 110 0011122211110 0123468899999999999
Q ss_pred eEEEEeecc
Q psy15128 277 WKLIAKNIR 285 (292)
Q Consensus 277 y~C~a~n~~ 285 (292)
|.|.+.+..
T Consensus 79 Y~C~~~~~~ 87 (98)
T cd05716 79 YWCGVGDDG 87 (98)
T ss_pred EEEEcccCC
Confidence 999998754
No 311
>cd04981 IgV_H Immunoglobulin (Ig) heavy chain (H), variable (V) domain. IgV_H: Immunoglobulin (Ig) heavy chain (H), variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which can associate with any of the heavy chains. This family includes alpha, gamma, delta, epsilon, and mu heavy chains.
Probab=98.20 E-value=1.8e-05 Score=52.33 Aligned_cols=73 Identities=16% Similarity=0.285 Sum_probs=47.1
Q ss_pred CCccEEecCCcEEEEEEEeeeC--CCeeEEEECCe---EEee---c--------cCCCcceeEEeee-----cEEEEccC
Q psy15128 43 PQDQKVGLNGIASFQCVAEGSP--LPSVFWTQEGS---QVLM---F--------PGNAYGHLHVTQE-----GTLRIQGV 101 (292)
Q Consensus 43 ~~~~~~~~g~~~~l~C~~~~~~--~~~v~W~~~~~---~~~~---~--------~~~~~~~~~~~~~-----~~l~i~~~ 101 (292)
|....+.+|++++|.|...+.. ...+.|||... ...+ . ......++..... ..|+|.++
T Consensus 4 ~~~~~v~~G~~vtL~C~~~~~~~~~~~~~WYkQ~~g~~p~~l~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~I~~~ 83 (117)
T cd04981 4 SGPGLVKPGQSLKLSCKASGFTFTSYGVNWVRQAPGKGLEWIGFINPGGGETYYADSVKGRFTITRDTSKSTVYLQLNSL 83 (117)
T ss_pred CCCeEEcCCCCEEEEEEEeCCCcccceEEEEEECCCCCcEEEEEEecCCCceEeCcccCCcEEEEEEccCCEEEEEECCC
Confidence 4456788999999999876432 45699998431 1110 0 0111233333211 26999999
Q ss_pred CCCCCeEEEEEEEe
Q psy15128 102 QKEDAGFFVCSALS 115 (292)
Q Consensus 102 ~~~d~g~Y~C~~~~ 115 (292)
..+|+|.|.|.+..
T Consensus 84 ~~~Dsa~YyCa~~~ 97 (117)
T cd04981 84 TPEDTAVYYCARGL 97 (117)
T ss_pred CHHHCEEEEEEEEc
Confidence 99999999998754
No 312
>cd05770 IgC_beta2m Class I major histocompatibility complex (MHC) beta2-microglobulin. IgC_beta2m: Immunoglobulin-like domain in beta2-Microglobulin (beta2m). Beta2m is the non-covalently bound light chain of the human class I major histocompatibility complex (MHC-I). Beta2m is structured as a beta-sandwich domain composed of two facing beta-sheets (four stranded and three stranded), that is typical of the C-type immunoglobulin superfamily. This structure is stabilized by an intramolecular disulfide bridge connecting two Cys residues in the facing beta -sheets. In vivo, MHC-I continuously exposes beta2m on the cell surface, where it may be released to plasmatic fluids, transported to the kidneys, degraded and then excreted.
Probab=98.18 E-value=6.1e-06 Score=51.66 Aligned_cols=70 Identities=19% Similarity=0.176 Sum_probs=44.3
Q ss_pred CCCceEEEeeCCCCCCCC-eEEEeEcCeEeccCCCceEEecCCCccccccccccccccccccccceeEEEEeeccc
Q psy15128 212 SGETALLECGPPKGQPEP-TLHWKKNGQFIDLESSKRVSILGDPWFDSRRSRSIFGSVLGALSDDQWKLIAKNIRN 286 (292)
Q Consensus 212 ~g~~~~l~C~~~~~~p~~-~~~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~a~n~~g 286 (292)
.|+..+|.|.|...+|.. .++|++||+.+.......+...+++.|..... | .+.+.+...|.|.+....-
T Consensus 14 ~g~~~~L~C~a~gFyP~~i~v~W~~dg~~~~~~~~~~~~p~~d~tyq~~s~--l---~~~~~~~~~ysC~V~H~~l 84 (93)
T cd05770 14 NGKPNVLNCYVTGFHPPDIEIRLLKNGVKIPKVEQSDLSFSKDWTFYLLKS--T---EFTPTKGDEYACRVRHNSM 84 (93)
T ss_pred CCCceEEEEEEEEEeCCCCEEEEEECCEECCCcEECcEEECCCCCEEEEEE--E---EECCCCCCeEEEEEEECCC
Confidence 456678999994446644 88999999998622222344455554443321 1 3345567799999987543
No 313
>cd07698 IgC_MHC_I_alpha3 Class I major histocompatibility complex (MHC) alpha chain immunoglobulin domain. IgC_MHC_I_alpha3; Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class I alpha chain. Class I MHC proteins bind antigenic peptide fragments and present them to CD8+ T lymphocytes. Class I molecules consist of a transmembrane alpha chain and a small chain called the beta2 microglobulin. The alpha chain contains three extracellular domains, two of which fold together to form the peptide-binding cleft (alpha1 and alpha2), and one which has an Ig fold (alpha3). Peptide binding to class I molecules occurs in the endoplasmic reticulum (ER) and involves both chaperones and dedicated factors to assist in peptide loading. Class I MHC molecules are expressed on most nucleated cells.
Probab=98.18 E-value=6.6e-06 Score=51.94 Aligned_cols=70 Identities=11% Similarity=0.149 Sum_probs=43.1
Q ss_pred CCceEEEeeCCCCCCCC-eEEEeEcCeEeccC-CCceEEecCCCccccccccccccccccccccceeEEEEeecccc
Q psy15128 213 GETALLECGPPKGQPEP-TLHWKKNGQFIDLE-SSKRVSILGDPWFDSRRSRSIFGSVLGALSDDQWKLIAKNIRNQ 287 (292)
Q Consensus 213 g~~~~l~C~~~~~~p~~-~~~W~~~g~~~~~~-~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~a~n~~g~ 287 (292)
++.++|.|.+...+|+. .++|.++|+.+... ........+++.|... ..|. +...+.+.|+|.+.+..-.
T Consensus 14 ~~~~~L~C~a~gF~P~~i~v~W~~~g~~~~~~~~~~~~~~~~d~ty~~~--s~l~---v~~~~~~~ytC~V~H~~~~ 85 (93)
T cd07698 14 DGSLTLSCHATGFYPRDIEVTWLRDGEDSVDDVESGEILPNGDGTYQLW--VTLE---VPPEDKARYSCRVEHSGLK 85 (93)
T ss_pred CCcEEEEEEEEEEeCCCcEEEEEECCEECcccccccceEECCCCeEEEE--EEEE---ECCCCCCEEEEEEEeCCCC
Confidence 67899999994445654 99999999643211 2223444445444422 1222 3334778999999876543
No 314
>cd05772 IgC_SIRP Signal-regulatory protein (SIRP) immunoglobulin-like domain. IgC_SIRP: Immunoglobulin-like domain of signal-regulatory proteins (SIRP); the signal-regulatory proteins (SIRP) are Ig-like cell surface receptors detected in hematopoietic and non-hematopoietic cells. While their extracellular domains are similar, SIRP are classified as alpha or beta based on the length of the intracytoplasmic domain. Those having a 110- to 113-amino acid tail are classified as SIRP-alpha, and those having a 5-amino acid tail as SIRP-beta. SIRP-alpha and SIRP-beta molecules are thought to have complementary roles in signal regulation: SIRP-alpha inhibit signalling via their immunoreceptor tyrosine (IT)-based inhibition motifs while SIRP-beta are activating. SIRP-beta lack the cytoplasmic domainof SIRP-alpha, and associate with at least one other transmembrane protein (DAP-12 or KARAP). The IT-based activation motifs within DAP-12's cytoplasmic domain may link SIRP-beta to the activating
Probab=98.17 E-value=8e-06 Score=53.08 Aligned_cols=73 Identities=18% Similarity=0.252 Sum_probs=45.1
Q ss_pred EeCCCceEEEeeCCCCCCC-CeEEEeEcCeEeccCCCceEEecCCC-ccccccccccccccccccccc-eeEEEEeeccc
Q psy15128 210 VASGETALLECGPPKGQPE-PTLHWKKNGQFIDLESSKRVSILGDP-WFDSRRSRSIFGSVLGALSDD-QWKLIAKNIRN 286 (292)
Q Consensus 210 ~~~g~~~~l~C~~~~~~p~-~~~~W~~~g~~~~~~~~~~~~~~~~~-~~~~~~~~~l~i~~~~~~~~g-~y~C~a~n~~g 286 (292)
...|+.++|.|.|...+|. ..++|++||+.+... ........++ .|... ..|.+. ....|.| .|+|.+.+..-
T Consensus 18 ~~~g~~~tL~C~a~gF~P~~i~v~W~kng~~~~~~-~~~~~p~~d~~ty~~~--S~L~~~-~~~~d~~~~ytC~V~H~~l 93 (111)
T cd05772 18 ANPGQSVNFTCSAHGFSPRDITVKWLKNGNELSAE-QPNITPEGDSVSYNVT--STVQVK-LTEDDVHSQVTCEVQHRTL 93 (111)
T ss_pred cCCCCCEEEEEEEeeEeCCCCEEEEEECCEECccc-ccceeeCCCCCcEEEE--EEEEEE-CccccccCceEEEEEeCCC
Confidence 4467889999999666775 599999999998532 1222222332 33322 233333 2344444 69999998653
No 315
>cd05769 IgC_TCR_beta T cell receptor (TCR) beta chain constant immunoglobulin domain. IgC_TCR_beta: Constant domain of the beta chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group includes the variable domain of the beta chain. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The antigen binding site is formed by the variable domains of the alpha and beta chains, located at the N-terminus of each chain. Alpha/beta TCRs recognize antigens differently from gamma/delta TCRs.
Probab=98.17 E-value=3.2e-06 Score=55.13 Aligned_cols=76 Identities=16% Similarity=0.199 Sum_probs=46.2
Q ss_pred CCCceEEEeeCCCCCCCC-eEEEeEcCeEeccCCCc-eEEecCC-Cccccccccccccccccccc-cceeEEEEeecccc
Q psy15128 212 SGETALLECGPPKGQPEP-TLHWKKNGQFIDLESSK-RVSILGD-PWFDSRRSRSIFGSVLGALS-DDQWKLIAKNIRNQ 287 (292)
Q Consensus 212 ~g~~~~l~C~~~~~~p~~-~~~W~~~g~~~~~~~~~-~~~~~~~-~~~~~~~~~~l~i~~~~~~~-~g~y~C~a~n~~g~ 287 (292)
.++.++|.|.|...+|.. .+.|++||+.+...... ......+ +.|.. ...|.+..-...+ ...|+|.+......
T Consensus 17 ~~~~~tL~Cla~gFyP~~I~V~W~kng~~l~~g~~~~~~~~~~~~gTYs~--~S~L~v~~~~w~~~~~~ytC~V~H~g~~ 94 (115)
T cd05769 17 NKRKATLVCLATGFYPDHVSLSWKVNGKEVTDGVATDPQALRENTSTYSI--SSRLRVSATEWFNPRNTFTCIVQFYGGT 94 (115)
T ss_pred cCCCcEEEEEEEeEeCCCcEEEEEECCEECCCCcccccceecCCCCeEEE--EEEEEEChHHhccCCCeEEEEEEEeCCc
Confidence 467799999995557764 89999999988532211 1222222 33332 2344444433334 45899999887655
Q ss_pred cc
Q psy15128 288 QQ 289 (292)
Q Consensus 288 ~~ 289 (292)
..
T Consensus 95 ~~ 96 (115)
T cd05769 95 DT 96 (115)
T ss_pred cc
Confidence 44
No 316
>cd05889 Ig1_DNAM-1_like First immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226) and similar proteins. Ig1_DNAM-1_like: domain similar to the first immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226). DNAM-1 is a transmembrane protein having two Ig-like domains. It is an adhesion molecule which plays a part in tumor-directed cytotoxicity and adhesion in natural killer (NK) cells and T lymphocytes. It has been shown to regulate the NK cell killing of several tumor types, including myeloma cells and ovarian carcinoma cells. DNAM-1 interacts specifically with poliovirus receptor (PVR; CD155) and nectin -2 (CD211), other members of the Ig superfamily. DNAM-1 is expressed in most peripheral T cells, NK cells, monocytes and a subset of B lymphocytes.
Probab=98.17 E-value=3.1e-05 Score=48.82 Aligned_cols=71 Identities=21% Similarity=0.438 Sum_probs=44.0
Q ss_pred CcEEEEEEEeee-CCCeeEEEECCe----EEeecc--------CCCcceeEEe----eecEEEEccCCCCCCeEEEEEEE
Q psy15128 52 GIASFQCVAEGS-PLPSVFWTQEGS----QVLMFP--------GNAYGHLHVT----QEGTLRIQGVQKEDAGFFVCSAL 114 (292)
Q Consensus 52 ~~~~l~C~~~~~-~~~~v~W~~~~~----~~~~~~--------~~~~~~~~~~----~~~~l~i~~~~~~d~g~Y~C~~~ 114 (292)
+.++|.|..... ....+.|.|... .+.... ..-.++..+. .+.+|.|.+++.+|+|.|+|.+.
T Consensus 1 ~~vtL~C~~~~~~~~~qV~W~k~~~~~~~~iavy~~~~g~~~~~~y~~Rv~f~~~~~~d~sI~i~nvt~~D~G~Y~C~~~ 80 (96)
T cd05889 1 EKMKLECVYPKTGVLIQVSWTKHNGSHKENIAVYHPIYGMHIEDKYRGRVYFLNSTREDMSLSFNNATEEDVGLYCCSLV 80 (96)
T ss_pred CCEEEEeEcCCCCcEEEEEEEEcCCCCCceEEEEECCCCCEECccccCeEEEecCCCCccEEEEcCCCcccCEEEEEEEE
Confidence 468999987532 344788988432 222211 1111333332 34689999999999999999987
Q ss_pred eC-CcCeeE
Q psy15128 115 SV-AGSTTV 122 (292)
Q Consensus 115 ~~-~~~~~~ 122 (292)
.. .|..+.
T Consensus 81 t~P~g~~~~ 89 (96)
T cd05889 81 TYPQGSWEK 89 (96)
T ss_pred eCCCCCeEE
Confidence 53 444443
No 317
>smart00407 IGc1 Immunoglobulin C-Type.
Probab=98.17 E-value=3.9e-05 Score=46.20 Aligned_cols=64 Identities=17% Similarity=0.279 Sum_probs=41.3
Q ss_pred EEEEEEEeee-CC-CeeEEEECCeEEeeccCC----CcceeEEeeecEEEEccCCCCCCeEEEEEEEeCC
Q psy15128 54 ASFQCVAEGS-PL-PSVFWTQEGSQVLMFPGN----AYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVA 117 (292)
Q Consensus 54 ~~l~C~~~~~-~~-~~v~W~~~~~~~~~~~~~----~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~ 117 (292)
++|.|.+.|+ |. ..+.|++++..+...... ......+...+.|.+.....++...|+|.+.+..
T Consensus 2 ~~L~C~a~gf~P~~i~v~W~k~g~~~~~~~~~~~~~~~~~gt~~~~s~L~v~~~~~~~~~~~tC~V~H~~ 71 (75)
T smart00407 2 ATLVCLVSGFYPPDITVTWLRNGQEVTSGVSTTDPLKNSDGTYFLSSYLTVSASTWESGDTYTCQVTHEG 71 (75)
T ss_pred eEEEEEEEeEeCCCCEEEEEECCEECCCCEEECceEECCCCCEEEEEEEEEccccCCCCCEEEEEEEEcC
Confidence 6899999996 54 489999998763210000 0011123334467777777778889999998754
No 318
>PF07654 C1-set: Immunoglobulin C1-set domain; InterPro: IPR003597 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents C1-set domains, which are classical Ig-like domains resembling the antibody constant domain. C1-set domains are found almost exclusively in molecules involved in the immune system, such as in immunoglobulin light and heavy chains, in the major histocompatibility complex (MHC) class I and II complex molecules [, ], and in various T-cell receptors.; PDB: 3BVN_D 3BXN_A 3PWV_E 3L9R_F 2XFX_B 1BMG_A 1K8I_A 3M1B_G 3M17_C 1EXU_A ....
Probab=98.17 E-value=4.3e-06 Score=51.59 Aligned_cols=72 Identities=18% Similarity=0.174 Sum_probs=47.3
Q ss_pred CCCceEEEeeCCCCCCCC-eEEEeEcCeEeccCCCceEEe-cCCCccccccccccccccccccccceeEEEEeeccccc
Q psy15128 212 SGETALLECGPPKGQPEP-TLHWKKNGQFIDLESSKRVSI-LGDPWFDSRRSRSIFGSVLGALSDDQWKLIAKNIRNQQ 288 (292)
Q Consensus 212 ~g~~~~l~C~~~~~~p~~-~~~W~~~g~~~~~~~~~~~~~-~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~a~n~~g~~ 288 (292)
.++.+.|.|.|...+|.. .|.|+++|+.+.......... ..++.|.... .|.+. ..+...|+|.++......
T Consensus 7 ~~~~~~L~C~v~~f~P~~i~v~W~~~~~~~~~~~~~~~~~~~~dgty~~~s--~l~v~---~~~~~~ysC~V~H~~l~~ 80 (83)
T PF07654_consen 7 LGGSVTLTCLVSGFYPKDITVTWLKNGKEVTEGVETTPPPPNSDGTYSVTS--SLTVT---WNSGDEYSCRVTHESLPE 80 (83)
T ss_dssp STSEEEEEEEEEEEBSSTEEEEEEETTEEETTTEEEEEEEEETTSEEEEEE--EEEEE---TTTTGGEEEEEEETTSSS
T ss_pred CCCCEEEEEEEEEEECCCcEEEEEeccceeeeeeeecccccccccceeeeE--EEEec---CCCCCEEEEEEEECCCCC
Confidence 488999999995556655 899999999886333222222 4566555432 22222 555569999999876543
No 319
>cd00096 Ig Immunoglobulin domain. Ig: immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of this group are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as, T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as, butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=98.17 E-value=8e-06 Score=48.45 Aligned_cols=69 Identities=22% Similarity=0.274 Sum_probs=45.6
Q ss_pred eEEEeeCCCCCCCCeEEEeEcCeEeccCCCceEEecCCCccccccccccccccccccccceeEEEEeeccccc
Q psy15128 216 ALLECGPPKGQPEPTLHWKKNGQFIDLESSKRVSILGDPWFDSRRSRSIFGSVLGALSDDQWKLIAKNIRNQQ 288 (292)
Q Consensus 216 ~~l~C~~~~~~p~~~~~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~a~n~~g~~ 288 (292)
+.|.|.+ .+.+...+.|++++......... ..............|.+..+...|.|.|.|.+.+..+..
T Consensus 1 ~~l~C~~-~~~~~~~~~W~~~~~~~~~~~~~---~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~ 69 (74)
T cd00096 1 VTLTCLA-SGPPPPTITWLKNGKPLPSSVLT---RVRSSRGTSSGSSTLTISNVTLEDSGTYTCVASNSAGTV 69 (74)
T ss_pred CEEEEEe-cCCCCCcEEEEECCEECCCcccE---EeccccCcceeEEEEEECccCcccCcEEEEEEecCcCcE
Confidence 4689998 56788899999988765322111 000111112233467888888999999999999876444
No 320
>cd07706 IgV_TCR_delta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) delta chain. IgV_TCR_delta: immunoglobulin (Ig) variable (V) domain of the delta chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is
Probab=98.16 E-value=7.9e-06 Score=54.09 Aligned_cols=77 Identities=18% Similarity=0.182 Sum_probs=48.2
Q ss_pred CcceEEeCCCceEEEeeCCCCCCCCeEEEeEc--CeE---ecc-------CCCceEEecCCCcccccccccccccccccc
Q psy15128 205 PKDTRVASGETALLECGPPKGQPEPTLHWKKN--GQF---IDL-------ESSKRVSILGDPWFDSRRSRSIFGSVLGAL 272 (292)
Q Consensus 205 ~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~--g~~---~~~-------~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~ 272 (292)
+..+.+.+|++|+|.|..........+.|++. +.. +.. ....|+.+..+ .......|.|..+..+
T Consensus 6 ~~~v~~~~G~~v~L~C~~~~~~~~~~v~Wyrq~~~~~~~~l~~~~~~~~~~~~~R~~~~~~---~~~~~~sL~I~~~~~~ 82 (116)
T cd07706 6 QPDVSVQVGEEVTLNCRYETSWTNYYIFWYKQLPSGEMTFLIRQKSIYGNATKGRYSVNFQ---KAQKSISLTISALQLE 82 (116)
T ss_pred CCceEEcCCCCEEEEEEEeCCCCceEEEEEEECCCCceEEEEEecCccCCccCCeEEEEEe---ccCCEEEEEECCCCHH
Confidence 35678899999999999733334568999983 211 100 00112222100 0012346899999999
Q ss_pred ccceeEEEEeec
Q psy15128 273 SDDQWKLIAKNI 284 (292)
Q Consensus 273 ~~g~y~C~a~n~ 284 (292)
|+|.|.|.+...
T Consensus 83 Dsg~Y~C~~~~~ 94 (116)
T cd07706 83 DSAKYFCALSTL 94 (116)
T ss_pred HCEEEEEEEECC
Confidence 999999999853
No 321
>cd05900 Ig_Aggrecan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan. Ig_Aggrecan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan. These aggregates contribute to the tissue's load bearing properties. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Aggrecan has a wide distribution in connective tissue and extracellular matrices. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes.
Probab=98.16 E-value=6.5e-06 Score=53.61 Aligned_cols=75 Identities=13% Similarity=0.175 Sum_probs=45.0
Q ss_pred CCCceEEEeeCCCCCC-----------CCeEEEeEc--Ce-E-eccCCCc----------eEEecCCCcccccccccccc
Q psy15128 212 SGETALLECGPPKGQP-----------EPTLHWKKN--GQ-F-IDLESSK----------RVSILGDPWFDSRRSRSIFG 266 (292)
Q Consensus 212 ~g~~~~l~C~~~~~~p-----------~~~~~W~~~--g~-~-~~~~~~~----------~~~~~~~~~~~~~~~~~l~i 266 (292)
.|++++|.|......+ .+.|.|+|- |+ + +...... |+.+.... .......|.|
T Consensus 1 ~G~~VtLpC~~~~~~~~~~~~~~~~~~~~~I~W~k~~~g~~~~ii~~~~~~~~~~~~f~~R~sl~~~~--~~~~~asL~I 78 (112)
T cd05900 1 LGSSLLIPCYFQDPIAKDPGAPTVAPLSPRIKWSFISKEKESVLLVATEGKVRVNTEYLDRVSLPNYP--AIPSDATLEI 78 (112)
T ss_pred CCCcEEEeeEEeCCcCccccccccCCCCCEEEEEEecCCCccEEEEEECCeEEECccccCeEEecccC--CCCCCcEEEE
Confidence 4899999999633221 459999983 21 1 1101111 22221100 0113457999
Q ss_pred ccccccccceeEEEEeeccccc
Q psy15128 267 SVLGALSDDQWKLIAKNIRNQQ 288 (292)
Q Consensus 267 ~~~~~~~~g~y~C~a~n~~g~~ 288 (292)
.+++..|+|+|+|.+.+.....
T Consensus 79 ~nl~~sDsG~Y~C~V~~g~~~~ 100 (112)
T cd05900 79 TELRSNDSGTYRCEVMHGIEDN 100 (112)
T ss_pred eecccccCEEEEEEEecCCCCc
Confidence 9999999999999999665443
No 322
>cd05720 Ig_CD8_alpha Immunoglobulin (Ig) like domain of CD8 alpha chain. Ig_CD8_alpha: immunoglobulin (Ig)-like domain in CD8 alpha. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alphaalpha or alphabeta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a v-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain. The Ig domain of CD8 alpha binds to antibodies.
Probab=98.15 E-value=1.5e-05 Score=51.44 Aligned_cols=68 Identities=18% Similarity=0.381 Sum_probs=44.2
Q ss_pred EEecCCcEEEEEEEeeeCCCeeEEEECCeE-------EeeccC--C--------CcceeEE---eeecEEEEccCCCCCC
Q psy15128 47 KVGLNGIASFQCVAEGSPLPSVFWTQEGSQ-------VLMFPG--N--------AYGHLHV---TQEGTLRIQGVQKEDA 106 (292)
Q Consensus 47 ~~~~g~~~~l~C~~~~~~~~~v~W~~~~~~-------~~~~~~--~--------~~~~~~~---~~~~~l~i~~~~~~d~ 106 (292)
.+.+|++++|.|.........+.|+|.... +..... . ...+... .....|+|.+++.+|+
T Consensus 2 ~v~~G~~vtL~C~~~~~~~~~v~Wyrq~~g~~~~~~~l~~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~L~I~~~~~sDs 81 (104)
T cd05720 2 DAELGQKVELKCEVLNSSPTGCSWLFQPPGSAPQPTFLVYLSGSSKITWDEEELSSKRFSGSRSSNSFVLTLKNFQKENE 81 (104)
T ss_pred cccCCCeEEEEEEecCCCCCcEEEEEeCCCCCCCCEEEEEEeCCCCeeeccccCCCceEEEEecCCEEEEEECCCCHHHC
Confidence 356899999999886544557999985422 111111 0 0122222 1223699999999999
Q ss_pred eEEEEEEE
Q psy15128 107 GFFVCSAL 114 (292)
Q Consensus 107 g~Y~C~~~ 114 (292)
|.|.|.+.
T Consensus 82 gtY~Ca~~ 89 (104)
T cd05720 82 GYYFCSVA 89 (104)
T ss_pred EEEEEEEc
Confidence 99999875
No 323
>cd07699 IgC_L Immunoglobulin Constant domain. IgC_L: Immunoglobulin (Ig) light chain constant (C) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.
Probab=98.13 E-value=4.9e-06 Score=53.18 Aligned_cols=74 Identities=12% Similarity=0.056 Sum_probs=45.6
Q ss_pred eCCCceEEEeeCCCCCC-CCeEEEeEcCeEeccCCC-ceEEecCCCccccccccccccccccccccceeEEEEeeccc
Q psy15128 211 ASGETALLECGPPKGQP-EPTLHWKKNGQFIDLESS-KRVSILGDPWFDSRRSRSIFGSVLGALSDDQWKLIAKNIRN 286 (292)
Q Consensus 211 ~~g~~~~l~C~~~~~~p-~~~~~W~~~g~~~~~~~~-~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~a~n~~g 286 (292)
..++.++|.|.|...+| ...+.|++||+.+..... .......++.|... ..|.+..-...+...|+|.+....-
T Consensus 15 ~~~~~~~L~C~~~gfyP~~i~v~W~~~g~~~~~~~~~~~~~~~~dgty~~~--s~L~v~~~~w~~~~~~sC~V~H~~l 90 (100)
T cd07699 15 EKSGKATLVCLINDFYPGFATVQWKVDGATVSSGVQTSTTEQQSDNTYSLS--SYLTLTKSDWNKHKVYTCEVTHEGL 90 (100)
T ss_pred ccCCCcEEEEEEEeEECCCCEEEEEECCEECcccEeccccEECCCCCEEEE--EEEEEcHHHhCCCCeEEEEEEecCC
Confidence 35778999999955576 558999999998842211 12233334444432 2333333333345699999987653
No 324
>cd00096 Ig Immunoglobulin domain. Ig: immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of this group are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as, T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as, butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=98.10 E-value=2.4e-05 Score=46.34 Aligned_cols=64 Identities=27% Similarity=0.462 Sum_probs=44.6
Q ss_pred EEEEEEEeeeCCCeeEEEECCeEEeeccC--CCcceeEEeeecEEEEccCCCCCCeEEEEEEEeCC
Q psy15128 54 ASFQCVAEGSPLPSVFWTQEGSQVLMFPG--NAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVA 117 (292)
Q Consensus 54 ~~l~C~~~~~~~~~v~W~~~~~~~~~~~~--~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~ 117 (292)
+.|.|.+.+.+...+.|++++........ .............|.|.++...|.|.|.|.+.+..
T Consensus 1 ~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~ 66 (74)
T cd00096 1 VTLTCLASGPPPPTITWLKNGKPLPSSVLTRVRSSRGTSSGSSTLTISNVTLEDSGTYTCVASNSA 66 (74)
T ss_pred CEEEEEecCCCCCcEEEEECCEECCCcccEEeccccCcceeEEEEEECccCcccCcEEEEEEecCc
Confidence 46899998867779999998765432111 01112223445579999999999999999998754
No 325
>cd07696 IgC_CH3 CH3 domain (third constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH3: The third immunoglobulin constant domain (IgC) of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=98.10 E-value=4e-05 Score=48.46 Aligned_cols=76 Identities=13% Similarity=0.180 Sum_probs=46.0
Q ss_pred ccEEecCCcEEEEEEEeee-CCC--eeEEEECCeEEeeccC---CCcceeEEeeecEEEEccCCCCCCeEEEEEEEeCCc
Q psy15128 45 DQKVGLNGIASFQCVAEGS-PLP--SVFWTQEGSQVLMFPG---NAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAG 118 (292)
Q Consensus 45 ~~~~~~g~~~~l~C~~~~~-~~~--~v~W~~~~~~~~~~~~---~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~~ 118 (292)
.-.+..|+.++|.|.+.|+ .++ .++|.|+++....... .......+...+.|.+......+...|+|.+.+...
T Consensus 8 ~~~l~~~~~~tLtC~v~gf~yP~~i~v~W~r~~~~~~~~~~~~~~~~~dgty~~~s~l~v~~~~w~~g~~ysC~V~H~~l 87 (96)
T cd07696 8 PKQLLLTKSVKLTCLVTNLTSPEGVNVTWTRGSGEPVKASIQPPESHNNATLSVTSTLNVSTDDWISGDTFQCKVTHPDL 87 (96)
T ss_pred HHHhccCCCeEEEEEEeCCCCCCCcEEEEEECCeEeeeEEecccccCCCCCEEEEEEEEeCHHHccCCCcEEEEEECCCC
Confidence 3345568999999999998 333 6899998753321110 011111233344566665555556689999988754
Q ss_pred Ce
Q psy15128 119 ST 120 (292)
Q Consensus 119 ~~ 120 (292)
..
T Consensus 88 ~~ 89 (96)
T cd07696 88 PT 89 (96)
T ss_pred CC
Confidence 43
No 326
>PHA03273 envelope glycoprotein C; Provisional
Probab=98.09 E-value=0.0011 Score=52.84 Aligned_cols=79 Identities=23% Similarity=0.371 Sum_probs=56.1
Q ss_pred EEEEccCCCCCCeEEEEEEEeCCcCeeEEEEEEEEeecCCCCCeEEeCCCCceecCCCeEEEEeEeccC-CCC--ceEEE
Q psy15128 95 TLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVTSVEDTPPPIVQVGPSNQTLPLHSVAFLPCQAVGS-PPP--HIRWY 171 (292)
Q Consensus 95 ~l~i~~~~~~d~g~Y~C~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~-p~~--~~~W~ 171 (292)
.|.|..++..++|.|+-...+..+......++.|.- ..+|.+.+.+. .+.+|+...-.|.+..+ |+- .+.|+
T Consensus 199 ~LtI~sltaaTeGvYtWr~~~~n~t~~~~~~VtV~~---yr~Psvsv~~~--PvL~Ge~y~A~C~aa~YYPp~Sv~~rWf 273 (486)
T PHA03273 199 PLTIKSVDWRTAGVYVWSLYAKNGTLVNSTSVTVST---YNAPLVDLSVH--PSLKGENYRAVCVVASYFPHSSVKLRWY 273 (486)
T ss_pred ceEEEecchhhceEEEEEEecCCCceeeeeEEEEEE---ecCCcccccCC--ccccCCCceEEEEeeeecCCCceEEEEE
Confidence 499999999999999977655444434445555432 23555555433 47799999999999666 432 59999
Q ss_pred eCCeeCC
Q psy15128 172 KNGNSLP 178 (292)
Q Consensus 172 ~~~~~l~ 178 (292)
.|+.++.
T Consensus 274 ~dg~~V~ 280 (486)
T PHA03273 274 KNAKEVD 280 (486)
T ss_pred eCCeecc
Confidence 9999887
No 327
>cd05878 Ig_Aggrecan_like Immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG). Ig_Aggrecan_like: immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG)s. Included in this group are the Ig domains of other CSPGs: versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substi
Probab=98.08 E-value=1.5e-05 Score=51.99 Aligned_cols=74 Identities=15% Similarity=0.108 Sum_probs=43.2
Q ss_pred CCCceEEEeeCCCCCC---------CCeEEEeEc--CeEe--ccCCCceEEec--CCCccc------ccccccccccccc
Q psy15128 212 SGETALLECGPPKGQP---------EPTLHWKKN--GQFI--DLESSKRVSIL--GDPWFD------SRRSRSIFGSVLG 270 (292)
Q Consensus 212 ~g~~~~l~C~~~~~~p---------~~~~~W~~~--g~~~--~~~~~~~~~~~--~~~~~~------~~~~~~l~i~~~~ 270 (292)
.|++++|.|......+ ...+.|++. ++.. ....+...... -.+... ......|.|..++
T Consensus 1 ~G~~V~LpC~~~~~~~~~~~~~~~~~~~i~W~k~~~~~~~~v~~~~~~~~~~~~~f~gR~~~~~~~~~~~~asL~I~~l~ 80 (110)
T cd05878 1 LSSSVLLPCYFTLPPALPPPSNAPESPRIKWTKLSGQKEVTVLVAQDGVVKVGQEYQGRVSLPNYPENRGDASLEISRLR 80 (110)
T ss_pred CCCCEEEeeEeeCCccccccccCCCCCEEEEEEecCCCcEEEEEEECCEEEecccccCeEEeccCCCCCCcEEEEECCCC
Confidence 4899999999733222 257999984 2221 10111111110 001111 1123469999999
Q ss_pred ccccceeEEEEeecc
Q psy15128 271 ALSDDQWKLIAKNIR 285 (292)
Q Consensus 271 ~~~~g~y~C~a~n~~ 285 (292)
..|+|.|.|.+....
T Consensus 81 ~sD~G~Y~C~v~~~~ 95 (110)
T cd05878 81 SSDSGVYRCEVMHGI 95 (110)
T ss_pred hhhCEEEEEEEEeCC
Confidence 999999999998754
No 328
>cd07703 Ig2_Nectin-2_like Second immunoglobulin (Ig) domain of nectin-2 (also known as poliovirus receptor related protein 2 or CD112) and similar proteins. Ig2_Nectin-2_like: domain similar to the second immunoglobulin (Ig) domain of nectin-2 (also known as poliovirus receptor related protein 2 or CD112). Nectin-2 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectin-2 and nectin-3 localize at Sertoli-spermatid junctions where they form heterophilic trans-interactions between the cells that are essential for the formation and maintenance of the junctions and for spermatid development.
Probab=98.07 E-value=1.9e-05 Score=49.63 Aligned_cols=76 Identities=12% Similarity=0.145 Sum_probs=45.7
Q ss_pred CcEEEEEEEe-eeCCCeeEEEECCeEEeeccCCCcceeEEeeecEEEEccCCCCCCeEEEEEEEeCCcCeeEEEEEE
Q psy15128 52 GIASFQCVAE-GSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQ 127 (292)
Q Consensus 52 ~~~~l~C~~~-~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~~~~~~~~~l~ 127 (292)
..+.+.|.+. +.|.+.|.|+++....................+.|.+.....+|...|+|++.+..........+.
T Consensus 16 ~~~va~C~s~~gkPaa~IsW~~~~~g~~~~~~~~~~~gt~tv~S~l~~~P~~~d~Gk~ltC~v~h~al~~~~~~~~~ 92 (95)
T cd07703 16 PVPVAKCVSANGRPPARISWSSTLGGNANTTSKENGDGTVTVTSEYSLVPTPEANGKEVTCKVEHETLQEPQLLPVT 92 (95)
T ss_pred ccEEEEEEcCCCCCCcEEEEEcCCCCCeeEEEEeCCCCCEEEEEEEEEecCHHHCCCEEEEEEeCcccCCCeEEEEE
Confidence 3578999775 578999999987321110000000111223345677877777777789999998765554444443
No 329
>cd05768 IgC_CH4 CH4 domain (fourth constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH4: The fourth immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=98.07 E-value=3e-05 Score=49.68 Aligned_cols=73 Identities=18% Similarity=0.222 Sum_probs=45.8
Q ss_pred EEecCCcEEEEEEEeeeCCC--eeEEEECCeEEeeccC----CC-c--ceeEEeeecEEEEccCCCCCCeEEEEEEEeCC
Q psy15128 47 KVGLNGIASFQCVAEGSPLP--SVFWTQEGSQVLMFPG----NA-Y--GHLHVTQEGTLRIQGVQKEDAGFFVCSALSVA 117 (292)
Q Consensus 47 ~~~~g~~~~l~C~~~~~~~~--~v~W~~~~~~~~~~~~----~~-~--~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~ 117 (292)
.+..++.++|.|.+.|+.+. .+.|++++..+..... .. . +...+...+.|.+..-...+...|+|.+.+..
T Consensus 12 ~~~~~~~~tL~C~a~gFyP~~i~v~W~k~g~~~~~~~~~~~~~~~~~~~dgTy~~~s~L~v~~~~w~~~~~ytC~V~H~~ 91 (102)
T cd05768 12 ELSLQETATLTCLVKGFSPSDIFVKWLQNGQPLSKQKYVTTAPMQEPGGNESYFLYSKLTVSAEDWNAGDVFTCVVGHEA 91 (102)
T ss_pred HhCcCCceEEEEEEeeEeCCCCEEEEEECCEECCcccccccCcccccCCCCeEEEEEEEEEcHHHhcCCCcEEEEeEeCC
Confidence 34457789999999996433 6799999987532110 00 0 01233344567776555556678999998765
Q ss_pred cC
Q psy15128 118 GS 119 (292)
Q Consensus 118 ~~ 119 (292)
..
T Consensus 92 l~ 93 (102)
T cd05768 92 LP 93 (102)
T ss_pred CC
Confidence 43
No 330
>PHA03269 envelope glycoprotein C; Provisional
Probab=98.07 E-value=0.0014 Score=52.51 Aligned_cols=93 Identities=16% Similarity=0.256 Sum_probs=59.4
Q ss_pred EEEEccCCCCCCeEEEEEEEeC-CcCeeEEEEEEEEeecCCCCCeEEeCCCCceecCCCeEEEEeEeccC-CCC--ceEE
Q psy15128 95 TLRIQGVQKEDAGFFVCSALSV-AGSTTVRAFLQVTSVEDTPPPIVQVGPSNQTLPLHSVAFLPCQAVGS-PPP--HIRW 170 (292)
Q Consensus 95 ~l~i~~~~~~d~g~Y~C~~~~~-~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~-p~~--~~~W 170 (292)
.|.|.+++..++|.|+-++.+. .+......++.|.. ...|.+.+.+ ..+.+|+...-.|.+..+ |+- .+.|
T Consensus 290 pL~I~sltaATeGvY~Wrv~~~~n~t~~~~~~VtV~~---yr~PsVsV~p--~PVL~Ge~YkAtC~vA~YYPp~SvrlrW 364 (566)
T PHA03269 290 SLHILSLDASTEGTYIWRVIHTANKNVINEHHITVMS---YKRPNITVIG--DPVLLGNPYAAYCKVNKYYPPHSVIVKW 364 (566)
T ss_pred ceEEeecccccCceEEEEEecCCCCceeeeeEEEEEE---ecCCCccccC--CccccCCCceEEEEeeeecCCCceEEEE
Confidence 5999999999999998776532 22333334444443 2244554433 347799999999999666 432 5999
Q ss_pred EeCCeeCCCCC--ccEEEcCCCcE
Q psy15128 171 YKNGNSLPPED--TRINVSSSGSL 192 (292)
Q Consensus 171 ~~~~~~l~~~~--~~~~~~~~~~l 192 (292)
+.|+.++.... .......+|.+
T Consensus 365 f~ng~~V~~~~it~t~~~~~dGlF 388 (566)
T PHA03269 365 TSNFGNIGKNFITDAIKENADGLF 388 (566)
T ss_pred EeCCcccCccccccceeecCCCce
Confidence 99988887522 22233455544
No 331
>cd05888 Ig1_Nectin-4_like Frst immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor) and similar proteins. Ig1_Nectin-4_like: domain similar to the first immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor). Nectin-4 belongs to the nectin family, which is comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example nectin-4 trans-interacts with nectin-1. Nectin-4 has also been shown to interact with the actin filament-binding protein, afadin. Unlike the other nectins, which are widely expressed in adult tissues, nectin-4 is mainly expressed during embryogenesis, and is not detected in normal adult
Probab=98.06 E-value=1.5e-05 Score=51.09 Aligned_cols=28 Identities=4% Similarity=-0.072 Sum_probs=23.4
Q ss_pred ccccccccccccccceeEEEEee-ccccc
Q psy15128 261 SRSIFGSVLGALSDDQWKLIAKN-IRNQQ 288 (292)
Q Consensus 261 ~~~l~i~~~~~~~~g~y~C~a~n-~~g~~ 288 (292)
..+|.|..++.+|+|.|.|.+.+ ..|..
T Consensus 63 ~~sL~I~nv~~sD~GtY~C~v~~~p~g~~ 91 (100)
T cd05888 63 DGALILRNAVQADEGKYKCRVITFPAGNF 91 (100)
T ss_pred ceEEEEecCccccceEEEEEEEeCCCCCe
Confidence 34699999999999999999998 55543
No 332
>cd05886 Ig1_Nectin-1_like First immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111) and similar proteins. Ig1_Nectin-1_like: domain similar to the first immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111). Nectin-1 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. In addition nectins heterophilically trans-interact with other CAMs such as nectin-like molecules (Necls), nectin-1 for example, has been shown to trans-interact with Necl-1. Nectins also interact with various other proteins, including the actin filament (F-actin)-binding protein, afadin. Mutation in the human nectin-1 gene is
Probab=98.05 E-value=1.9e-05 Score=50.16 Aligned_cols=28 Identities=11% Similarity=-0.050 Sum_probs=24.2
Q ss_pred cccccccccccccceeEEEEee-cccccc
Q psy15128 262 RSIFGSVLGALSDDQWKLIAKN-IRNQQQ 289 (292)
Q Consensus 262 ~~l~i~~~~~~~~g~y~C~a~n-~~g~~~ 289 (292)
.+|.|.+++.+|+|.|.|.+.| +.|+.+
T Consensus 63 aSi~i~nl~~~D~G~Y~C~v~t~P~g~~~ 91 (99)
T cd05886 63 GTISLSRLELEDEGVYICEFATFPTGNRE 91 (99)
T ss_pred ceEEEcCCccccCEEEEEEEEeCCCCCeE
Confidence 5789999999999999999999 677543
No 333
>cd05846 Ig1_MRC-OX-2_like First immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200) and similar proteins. Ig1_ MRC-OX-2_like: domain similar to the first immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200). MRC OX-2 is a membrane glycoprotein expressed in a variety of lymphoid and non-lymphoid cells in rats. It has a similar broad distribution pattern in humans. MRC OX-2 may regulate myeloid cell activity. The protein has an extracellular portion containing two Ig-like domains, a transmembrane portion, and a cytoplasmic portion.
Probab=98.04 E-value=2.2e-05 Score=50.07 Aligned_cols=75 Identities=15% Similarity=0.023 Sum_probs=41.4
Q ss_pred CCceEEEeeCCCCCCCCeEEEeEcCe----Eec-c--CCCceEEecCCCcc----ccccccccccccccccccceeEEEE
Q psy15128 213 GETALLECGPPKGQPEPTLHWKKNGQ----FID-L--ESSKRVSILGDPWF----DSRRSRSIFGSVLGALSDDQWKLIA 281 (292)
Q Consensus 213 g~~~~l~C~~~~~~p~~~~~W~~~g~----~~~-~--~~~~~~~~~~~~~~----~~~~~~~l~i~~~~~~~~g~y~C~a 281 (292)
|++++|.|........-.+.|++... .+. . ..+....-...+.. .......|.|.++..+|+|.|.|..
T Consensus 1 G~~vtL~C~~~~~~~~~~v~W~k~~~~~~~~i~~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~nv~~~D~G~Y~C~~ 80 (97)
T cd05846 1 GGNVTLSCNLTLPEEVLQVTWQKIQGSSPENIATYSEKYGVKIQPSYFRRRSITSLGLNSTSITIWNVTLEDEGCYKCIF 80 (97)
T ss_pred CCcEEEEEEeCCCCeeEEEEEEEcCCCCceEEEEEcccCCcccCCCccCeEEEcCCCCCccEEEEeCCceeeeEEEEEEE
Confidence 78999999853332223799998421 110 0 01111000000000 0123356999999999999999998
Q ss_pred e-ecccc
Q psy15128 282 K-NIRNQ 287 (292)
Q Consensus 282 ~-n~~g~ 287 (292)
. .+.|.
T Consensus 81 ~~~p~g~ 87 (97)
T cd05846 81 NTFPDGS 87 (97)
T ss_pred EeCCCCC
Confidence 7 34443
No 334
>cd05719 Ig2_PVR_like Second immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155) and similar proteins. Ig2_PVR_like: domain similar to the second immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155). Poliovirus (PV) binds to its cellular receptor (PVR/CD155) to initiate infection. CD155 is a membrane-anchored, single-span glycoprotein; its extracellular region has three Ig-like domains. There are four different isotypes of CD155 (referred to as alpha, beta, gamma, and delta), these result from alternate splicing of the CD155 mRNA, and have identical extracellular domains. CD155-beta and - gamma, are secreted, CD155-alpha and delta are membrane-bound and function as PV receptors. The virus recognition site is contained in the amino-terminal domain, D1. Having the virus attachment site on the receptor distal from the plasma membrane may be important for successful initiation of infection of cells by the virus. CD155 binds in the poliovirus
Probab=98.04 E-value=2.2e-05 Score=49.46 Aligned_cols=70 Identities=11% Similarity=0.176 Sum_probs=41.7
Q ss_pred CCceEEEeeCCCCCCCCeEEEeEcCeEeccCCCceEEecCCCccccccccccccccccccccc-eeEEEEeeccccc
Q psy15128 213 GETALLECGPPKGQPEPTLHWKKNGQFIDLESSKRVSILGDPWFDSRRSRSIFGSVLGALSDD-QWKLIAKNIRNQQ 288 (292)
Q Consensus 213 g~~~~l~C~~~~~~p~~~~~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g-~y~C~a~n~~g~~ 288 (292)
.....+.|.+..|.|.+.|.|+++ +............++.+.. ...|.+ ....+|.| .|+|.|.|..-..
T Consensus 15 ~~~~va~C~s~~gkP~a~ItW~~~---~~~~~~~~~~~~~~g~~tv--~S~l~~-~p~~~d~G~~~tC~v~h~~l~~ 85 (95)
T cd05719 15 EPVTVATCVSANGKPPATISWETT---LGGEAETQSKENPNGTVTV--TSEYRL-VPSREANGKELTCVVSHPTLQE 85 (95)
T ss_pred CccEEEEEECCCCcCCCEEEEEeC---CCCcceeEeecCCCCCEEE--EEEEEE-ecCHHHCCCEEEEEEeCcccCC
Confidence 445778999988999999999997 2111111222223332222 223333 34455555 8999999986443
No 335
>PHA02987 Ig domain OX-2-like protein; Provisional
Probab=98.04 E-value=3e-05 Score=54.08 Aligned_cols=74 Identities=14% Similarity=0.227 Sum_probs=48.5
Q ss_pred cceEEeCCCceEEEeeCCCCCCCCeEEEeEcCeEec-cC-CC--------ceEEecCCCccccccccccccccccccccc
Q psy15128 206 KDTRVASGETALLECGPPKGQPEPTLHWKKNGQFID-LE-SS--------KRVSILGDPWFDSRRSRSIFGSVLGALSDD 275 (292)
Q Consensus 206 ~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~g~~~~-~~-~~--------~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g 275 (292)
...++.+|++++|.|....+...+.+.|+|..+.+. .. .+ .|+.+...+ .....|.|..+..+|+|
T Consensus 23 ~~v~V~ege~VtLsCs~t~s~~~~qVtWkK~~~~IatY~~~g~~i~~~Fk~Rve~mS~s----~~~StItIknVt~sDeG 98 (189)
T PHA02987 23 VKITVSEHVNVKISCNKTSSFNSILITWKKNNKTIAGYGPCGPVIVDKFKNKIEYLSKS----FNESTILIKNVSLKDNG 98 (189)
T ss_pred EEEEEcCCCCEEEEEecCCCCccceEEEEEcCCCEEEEecCCcEEChhhcCeEEEeccC----CCcceEEEEeCChhhCe
Confidence 356789999999999963355677899999643321 01 11 122211111 12346889999999999
Q ss_pred eeEEEEee
Q psy15128 276 QWKLIAKN 283 (292)
Q Consensus 276 ~y~C~a~n 283 (292)
.|.|...-
T Consensus 99 cY~C~F~t 106 (189)
T PHA02987 99 CYTCIFNT 106 (189)
T ss_pred EEEEEEEe
Confidence 99998753
No 336
>cd05768 IgC_CH4 CH4 domain (fourth constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH4: The fourth immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=98.04 E-value=8.3e-06 Score=52.25 Aligned_cols=75 Identities=17% Similarity=0.120 Sum_probs=43.5
Q ss_pred EeCCCceEEEeeCCCCCCCC-eEEEeEcCeEeccCCCce--EEec--CCCccccccccccccccccccccceeEEEEeec
Q psy15128 210 VASGETALLECGPPKGQPEP-TLHWKKNGQFIDLESSKR--VSIL--GDPWFDSRRSRSIFGSVLGALSDDQWKLIAKNI 284 (292)
Q Consensus 210 ~~~g~~~~l~C~~~~~~p~~-~~~W~~~g~~~~~~~~~~--~~~~--~~~~~~~~~~~~l~i~~~~~~~~g~y~C~a~n~ 284 (292)
+..|+.++|.|.|...+|.. .++|++||+++....... .... +++.|... ..|.+..-...+...|+|.+...
T Consensus 13 ~~~~~~~tL~C~a~gFyP~~i~v~W~k~g~~~~~~~~~~~~~~~~~~~dgTy~~~--s~L~v~~~~w~~~~~ytC~V~H~ 90 (102)
T cd05768 13 LSLQETATLTCLVKGFSPSDIFVKWLQNGQPLSKQKYVTTAPMQEPGGNESYFLY--SKLTVSAEDWNAGDVFTCVVGHE 90 (102)
T ss_pred hCcCCceEEEEEEeeEeCCCCEEEEEECCEECCcccccccCcccccCCCCeEEEE--EEEEEcHHHhcCCCcEEEEeEeC
Confidence 34578899999995446644 789999999875321111 1111 12434322 23333332233456899999876
Q ss_pred cc
Q psy15128 285 RN 286 (292)
Q Consensus 285 ~g 286 (292)
.-
T Consensus 91 ~l 92 (102)
T cd05768 91 AL 92 (102)
T ss_pred CC
Confidence 54
No 337
>cd05770 IgC_beta2m Class I major histocompatibility complex (MHC) beta2-microglobulin. IgC_beta2m: Immunoglobulin-like domain in beta2-Microglobulin (beta2m). Beta2m is the non-covalently bound light chain of the human class I major histocompatibility complex (MHC-I). Beta2m is structured as a beta-sandwich domain composed of two facing beta-sheets (four stranded and three stranded), that is typical of the C-type immunoglobulin superfamily. This structure is stabilized by an intramolecular disulfide bridge connecting two Cys residues in the facing beta -sheets. In vivo, MHC-I continuously exposes beta2m on the cell surface, where it may be released to plasmatic fluids, transported to the kidneys, degraded and then excreted.
Probab=98.02 E-value=0.00011 Score=46.13 Aligned_cols=64 Identities=8% Similarity=0.106 Sum_probs=39.5
Q ss_pred ecCCcEEEEEEEeeeCC--CeeEEEECCeEEeeccCCCcceeEEeeec------EEEEccCCCCCCeEEEEEEEeCCc
Q psy15128 49 GLNGIASFQCVAEGSPL--PSVFWTQEGSQVLMFPGNAYGHLHVTQEG------TLRIQGVQKEDAGFFVCSALSVAG 118 (292)
Q Consensus 49 ~~g~~~~l~C~~~~~~~--~~v~W~~~~~~~~~~~~~~~~~~~~~~~~------~l~i~~~~~~d~g~Y~C~~~~~~~ 118 (292)
..|...+|.|.+.|+.+ ..+.|.++|..+. +..........++ .|.+ .+.+...|+|.+.+...
T Consensus 13 ~~g~~~~L~C~a~gFyP~~i~v~W~~dg~~~~---~~~~~~~~p~~d~tyq~~s~l~~---~~~~~~~ysC~V~H~~l 84 (93)
T cd05770 13 ENGKPNVLNCYVTGFHPPDIEIRLLKNGVKIP---KVEQSDLSFSKDWTFYLLKSTEF---TPTKGDEYACRVRHNSM 84 (93)
T ss_pred cCCCceEEEEEEEEEeCCCCEEEEEECCEECC---CcEECcEEECCCCCEEEEEEEEE---CCCCCCeEEEEEEECCC
Confidence 34666799999999633 3789999998753 1111111112222 3333 35677789999988643
No 338
>cd07700 IgV_CD8_beta Immunoglobulin (Ig) like domain of CD8 beta chain. IgV_CD8_beta: immunoglobulin (Ig)-like domain in CD8 beta. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alpha/alpha or alpha/beta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a V-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain.
Probab=98.01 E-value=2.3e-05 Score=50.96 Aligned_cols=74 Identities=11% Similarity=0.121 Sum_probs=43.4
Q ss_pred EEeCCCceEEEeeCCCC-CCCCeEEEeEc--C---eE----eccCCCceEEecC---CCcccc-----cccccccccccc
Q psy15128 209 RVASGETALLECGPPKG-QPEPTLHWKKN--G---QF----IDLESSKRVSILG---DPWFDS-----RRSRSIFGSVLG 270 (292)
Q Consensus 209 ~~~~g~~~~l~C~~~~~-~p~~~~~W~~~--g---~~----~~~~~~~~~~~~~---~~~~~~-----~~~~~l~i~~~~ 270 (292)
.+.+|++++|.|.+ .+ .....+.|++. | +. +...........+ ...+.. .....|.|..+.
T Consensus 2 ~v~~G~~vtL~C~~-~~~~~~~~~~Wyrq~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~I~~~~ 80 (107)
T cd07700 2 LVQTNNTVKLSCEA-KGISENTRIYWLRWRQAPKDSHFEFLALWSPLGGATYGEEVSQEKFSIRVTSDSSRYRLHINRVK 80 (107)
T ss_pred EEcCCCCEEEEEEE-ecCCCCCeEEEEEECCCCCCCccEEEEEEcCCCCeEEccccccCcEEEEEECCCCEEEEEECCCC
Confidence 57899999999997 44 33458999983 2 11 1001111010000 111111 112358999999
Q ss_pred ccccceeEEEEee
Q psy15128 271 ALSDDQWKLIAKN 283 (292)
Q Consensus 271 ~~~~g~y~C~a~n 283 (292)
.+|+|.|.|...+
T Consensus 81 ~~Dsg~YyCa~~~ 93 (107)
T cd07700 81 PEDSGTYFCMTVG 93 (107)
T ss_pred HHHCEEEEEeEcC
Confidence 9999999999863
No 339
>cd07696 IgC_CH3 CH3 domain (third constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH3: The third immunoglobulin constant domain (IgC) of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=98.01 E-value=1.1e-05 Score=50.91 Aligned_cols=76 Identities=12% Similarity=0.081 Sum_probs=41.9
Q ss_pred EEeCCCceEEEeeCCCC-CCCC-eEEEeEcCeEeccCCCceEEecCCCccccccccccccccccccccceeEEEEeeccc
Q psy15128 209 RVASGETALLECGPPKG-QPEP-TLHWKKNGQFIDLESSKRVSILGDPWFDSRRSRSIFGSVLGALSDDQWKLIAKNIRN 286 (292)
Q Consensus 209 ~~~~g~~~~l~C~~~~~-~p~~-~~~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~a~n~~g 286 (292)
.+..|+.++|.|.|... +|+. .++|+++|...............++.|... ..|.+..-...+.-.|+|.+....-
T Consensus 10 ~l~~~~~~tLtC~v~gf~yP~~i~v~W~r~~~~~~~~~~~~~~~~~dgty~~~--s~l~v~~~~w~~g~~ysC~V~H~~l 87 (96)
T cd07696 10 QLLLTKSVKLTCLVTNLTSPEGVNVTWTRGSGEPVKASIQPPESHNNATLSVT--STLNVSTDDWISGDTFQCKVTHPDL 87 (96)
T ss_pred HhccCCCeEEEEEEeCCCCCCCcEEEEEECCeEeeeEEecccccCCCCCEEEE--EEEEeCHHHccCCCcEEEEEECCCC
Confidence 45568999999999444 3544 889999874331111112223334433322 2232332222234489999987653
No 340
>PF07686 V-set: Immunoglobulin V-set domain; InterPro: IPR013106 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the V-set domains, which are Ig-like domains resembling the antibody variable domain. V-set domains are found in diverse protein families, including immunoglobulin light and heavy chains; in several T-cell receptors such as CD2 (Cluster of Differentiation 2), CD4, CD80, and CD86; in myelin membrane adhesion molecules; in junction adhesion molecules (JAM); in tyrosine-protein kinase receptors; and in the programmed cell death protein 1 (PD1).; PDB: 1PY9_A 2NXY_D 1U9K_B 3RNK_A 3BP6_A 3BIK_B 3SBW_A 1NPU_A 3BP5_A 3RNQ_A ....
Probab=98.00 E-value=7.4e-06 Score=54.00 Aligned_cols=79 Identities=14% Similarity=0.152 Sum_probs=48.4
Q ss_pred cceEEeCCCceEEEeeCCCCCCCCeEEEeEcCe-----Eec-cCCCceEEecCC---Ccccc-----ccccccccccccc
Q psy15128 206 KDTRVASGETALLECGPPKGQPEPTLHWKKNGQ-----FID-LESSKRVSILGD---PWFDS-----RRSRSIFGSVLGA 271 (292)
Q Consensus 206 ~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~g~-----~~~-~~~~~~~~~~~~---~~~~~-----~~~~~l~i~~~~~ 271 (292)
....+.+|+++.|.|..........+.|++... .+. ............ +.... .....|.|..++.
T Consensus 9 ~~v~~~~G~~v~L~C~~~~~~~~~~v~W~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~i~~l~~ 88 (114)
T PF07686_consen 9 SPVTVQEGESVTLPCSYSSSSNQSSVYWYRQSPGQGPQLIIRYSLSSTNETPTPSYSGRFTFSGNGSQNNFSLTIKNLQP 88 (114)
T ss_dssp SEEEEETTSEEEEEEEEESSSSGSEEEEEEEETTSEEEEEEEEETTEEEEEEETTETTTEEEEEETTTTEEEEEESSESG
T ss_pred CeEEEecCCCEEEEEEEeCCCCcceEEEEEECccccceeeeeeccceeeeccccceeeeeeeeecccCCeEEEEECCCCc
Confidence 467889999999999973134556899998322 111 001111111111 11111 1223699999999
Q ss_pred cccceeEEEEeec
Q psy15128 272 LSDDQWKLIAKNI 284 (292)
Q Consensus 272 ~~~g~y~C~a~n~ 284 (292)
.|+|.|.|.+...
T Consensus 89 ~DsG~Y~C~v~~~ 101 (114)
T PF07686_consen 89 SDSGTYFCQVSTS 101 (114)
T ss_dssp GGEEEEEEEEEES
T ss_pred CcCEEEEEEEEEC
Confidence 9999999999876
No 341
>PHA03271 envelope glycoprotein C; Provisional
Probab=97.99 E-value=0.0013 Score=51.62 Aligned_cols=205 Identities=16% Similarity=0.152 Sum_probs=104.5
Q ss_pred cccCCcCCCeeEEEEEEecccccc-cccEEEEEe-CCCcEEeCCCccEEecCCcEEEEEEEeeeCCC---eeEEEECCeE
Q psy15128 2 ITEVKKSDEGKYQCYVQNMVGERE-TKPALLTVH-APPSFVVRPQDQKVGLNGIASFQCVAEGSPLP---SVFWTQEGSQ 76 (292)
Q Consensus 2 i~~v~~~D~G~Y~C~~~~~~~~~~-~~~~~l~v~-~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~---~v~W~~~~~~ 76 (292)
|.++...|+|.|+-...+...... .+-+.+.+. .+|.+.+.+. .+..|+...-.|.+..+.++ .+.|+++|..
T Consensus 211 I~svD~~t~Gy~~v~~~d~~N~~i~e~~~~~~v~~RPPsVsV~a~--PVL~Ge~YkAtC~vAnYYPP~SvrlrWf~nG~~ 288 (490)
T PHA03271 211 IRNVDYADNGYIQVIMRDPFNRPLLDKHIYIRVCQRPASVDVLAP--PVLSGENYKASCIVRHFYPPGSVYVSWRQNGNI 288 (490)
T ss_pred EEEeecccceEEEEEecCCCCCccccceEEEEEEecCCCccccCC--ccccCCCceEEEEeeeecCCCceEEEEEeCCcc
Confidence 678888999977655555433322 221344443 4555655553 37789999999999875333 6899999876
Q ss_pred EeeccCCCccee-------EEeeecEEEEccCCCCCCeEEEEEEEeCCcCeeEEEEEEEEeecCCCCCeEEeCCCCceec
Q psy15128 77 VLMFPGNAYGHL-------HVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVTSVEDTPPPIVQVGPSNQTLP 149 (292)
Q Consensus 77 ~~~~~~~~~~~~-------~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~ 149 (292)
..... ...... ..+.-+.|.+.+...+..-..+|.+.-..........-.+. ...+++|.+.+ ...
T Consensus 289 V~~~~-~rdt~~~w~d~~~g~S~VSTltl~a~~~~~PPsLRCeV~W~rd~v~s~rnAaat-P~VY~~P~ISv-----~Fe 361 (490)
T PHA03271 289 ATPRK-DRDGSFWWFESGRGATLVSTITLGNSGIDPPPKISCLVAWKQGDMISTTNATAI-PTVYHHPRISL-----AFK 361 (490)
T ss_pred ccCcc-ccceeEEEecCCCceeEEEEEEcccccCCCCCCceEEEEEccCCceeeeecccC-CccccCCeEEE-----EEe
Confidence 63222 111111 11222345554443344447899987433322222111111 11123344332 233
Q ss_pred CCCeEEEEeEeccCC-CCceEEEeCCeeCCCCCcc-----EEEcCCCcEEEEeeecCCCCCCcceEEe-CCCceEEEeeC
Q psy15128 150 LHSVAFLPCQAVGSP-PPHIRWYKNGNSLPPEDTR-----INVSSSGSLQIDVLRDDFRAEPKDTRVA-SGETALLECGP 222 (292)
Q Consensus 150 ~g~~v~l~C~~~~~p-~~~~~W~~~~~~l~~~~~~-----~~~~~~~~l~i~~~~~~d~g~~~~~~~~-~g~~~~l~C~~ 222 (292)
.|+- .|.+.--| ...+.|+-++...+..... .-....+...|.+. ..+. .++.+..+|.+
T Consensus 362 dG~A---VCtA~CVP~gV~lrWlVgD~p~pn~t~d~~itGvC~erPGlVNLrS~----------lPlSd~dgpveYTCrL 428 (490)
T PHA03271 362 DGYA---ICTIECVPSGITVRWLVHDEPQPNTTYDTVVTGLCRTIDRHRNLISR----------IPVQDNWQKTKYTCRL 428 (490)
T ss_pred CCEE---EEeccccCCCcEEEEEecCCCCCCcccccccccccCCCCCceeeecc----------CCchhcCCceeEEEEE
Confidence 3433 45554333 4579999876654332110 00111222233321 1111 34678899998
Q ss_pred CCCCCCC
Q psy15128 223 PKGQPEP 229 (292)
Q Consensus 223 ~~~~p~~ 229 (292)
.|+|..
T Consensus 429 -~GYP~~ 434 (490)
T PHA03271 429 -IGYPFD 434 (490)
T ss_pred -eecCCC
Confidence 898855
No 342
>cd05887 Ig1_Nectin-3_like First immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3) and similar proteins. Ig1_Nectin-3_like: domain similar to the first immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3). Nectin-3 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example, during spermatid development, the nectin-3,-2 trans-interaction is required for the formation of Sertoli cell-spermatid junctions in testis, and during morphogenesis of the ciliary body, the nectin-3,-1 trans-interaction is important for apex-apex adhesion between the pigment and non-pigment layers of the ciliary epithelia. Nectins also
Probab=97.99 E-value=2.2e-05 Score=49.43 Aligned_cols=74 Identities=15% Similarity=0.082 Sum_probs=44.5
Q ss_pred CceEEEeeCCCCCCCCeEEEeEcC----eEec-cC----------CCceEEecCCCccccccccccccccccccccceeE
Q psy15128 214 ETALLECGPPKGQPEPTLHWKKNG----QFID-LE----------SSKRVSILGDPWFDSRRSRSIFGSVLGALSDDQWK 278 (292)
Q Consensus 214 ~~~~l~C~~~~~~p~~~~~W~~~g----~~~~-~~----------~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~ 278 (292)
++++|.|..........+.|.|-. ..+. .+ =..|+.+...+ ....+|.|.++..+|+|.|.
T Consensus 1 ~~vtL~C~~~~~~~~~qV~W~k~~~~~~~~ia~y~~~~g~~~~~~y~~Rv~~~~~~----~~d~sl~i~nv~~~D~G~Y~ 76 (96)
T cd05887 1 KNVTLKCRIQVNETITQSSWEKIHGKGSVTLAVHHPMYGISIQPDYQGRVSFKNYS----LLDATIMLENVGFSDIGVYI 76 (96)
T ss_pred CCEEEEEEecCCCcEEEEEEEEcCCCCcEEEEEEcccCCcccChhhCCcEEEcCCC----CCccEEEEeCCCccccEEEE
Confidence 468999996333334489998842 1221 00 01123332111 12347899999999999999
Q ss_pred EEE-eecccccccC
Q psy15128 279 LIA-KNIRNQQQHG 291 (292)
Q Consensus 279 C~a-~n~~g~~~~~ 291 (292)
|.+ +.+.|+.+.+
T Consensus 77 C~v~tfP~G~~~~~ 90 (96)
T cd05887 77 CKAVTFPLGNTQSS 90 (96)
T ss_pred EEEEeCCCCCeeEE
Confidence 996 5677766544
No 343
>cd05767 IgC_MHC_II_alpha Class II major histocompatibility complex (MHC) alpha chain immunoglobulin domain. IgC_MHC_II_alpha: Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class II alpha chain. MHC class II molecules play a key role in the initiation of the antigen-specific immune reponse. In both humans and in mice these molecules have been shown to be expressed constitutively on the cell surface of professional antigen-presenting cells (APCs), for example on B-lymphocytes, monocytes, and macrophages. The expression of these molecules has been shown to be induced in nonprofessional APCs such as keratinocyctes, and they are expressed on the surface of activated human T cells and on T cells from other species. The MHC II molecules present antigenic peptides to CD4(+) T-lymphocytes. These peptides derive mostly from protelytic processing via the endocytic pathway, of antigens internalized by the APC. These peptides bind to the MHC class II molecules in the endosom
Probab=97.98 E-value=2.3e-05 Score=49.25 Aligned_cols=70 Identities=20% Similarity=0.119 Sum_probs=43.7
Q ss_pred CCCceEEEeeCCCCCCC-CeEEEeEcCeEeccCC-CceEEecCCCccccccccccccccccccccceeEEEEeeccc
Q psy15128 212 SGETALLECGPPKGQPE-PTLHWKKNGQFIDLES-SKRVSILGDPWFDSRRSRSIFGSVLGALSDDQWKLIAKNIRN 286 (292)
Q Consensus 212 ~g~~~~l~C~~~~~~p~-~~~~W~~~g~~~~~~~-~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~a~n~~g 286 (292)
.++..+|.|.|...+|. ..++|.+||+.+.... ...+....++.|... ..|.+ .+.+...|+|.+....-
T Consensus 14 ~~~~~tL~C~a~gFyP~~I~v~W~~~g~~~~~~~~~~~~~~~~Dgty~~~--s~L~v---~~~~~~~ytC~V~H~~l 85 (94)
T cd05767 14 LGEPNTLICFVDNFFPPVLNVTWLKNGVPVTDGVSETRYYPRQDLSFQKF--SYLNF---TPEEGDIYSCIVEHWGL 85 (94)
T ss_pred CCCCeEEEEEEEEEECCcCEEEEEECCeEccCceEEeeeEeCCCCcEEEE--EEEEE---ECCCCCeEEEEEEeCCC
Confidence 35668999999554664 4889999999875321 123344455554433 22322 33455699999987643
No 344
>cd07703 Ig2_Nectin-2_like Second immunoglobulin (Ig) domain of nectin-2 (also known as poliovirus receptor related protein 2 or CD112) and similar proteins. Ig2_Nectin-2_like: domain similar to the second immunoglobulin (Ig) domain of nectin-2 (also known as poliovirus receptor related protein 2 or CD112). Nectin-2 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectin-2 and nectin-3 localize at Sertoli-spermatid junctions where they form heterophilic trans-interactions between the cells that are essential for the formation and maintenance of the junctions and for spermatid development.
Probab=97.95 E-value=3.6e-05 Score=48.41 Aligned_cols=68 Identities=12% Similarity=0.117 Sum_probs=40.3
Q ss_pred CceEEEeeCCCCCCCCeEEEeEcCeEeccCCCceEEecCCCccccccccccccccccccccc-eeEEEEeecccc
Q psy15128 214 ETALLECGPPKGQPEPTLHWKKNGQFIDLESSKRVSILGDPWFDSRRSRSIFGSVLGALSDD-QWKLIAKNIRNQ 287 (292)
Q Consensus 214 ~~~~l~C~~~~~~p~~~~~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g-~y~C~a~n~~g~ 287 (292)
..+.+.|.+..+.|.+.|+|+++... ..........++.+. ....|.+ ....+|.| .|+|.|.|..-+
T Consensus 16 ~~~va~C~s~~gkPaa~IsW~~~~~g---~~~~~~~~~~~gt~t--v~S~l~~-~P~~~d~Gk~ltC~v~h~al~ 84 (95)
T cd07703 16 PVPVAKCVSANGRPPARISWSSTLGG---NANTTSKENGDGTVT--VTSEYSL-VPTPEANGKEVTCKVEHETLQ 84 (95)
T ss_pred ccEEEEEEcCCCCCCcEEEEEcCCCC---CeeEEEEeCCCCCEE--EEEEEEE-ecCHHHCCCEEEEEEeCcccC
Confidence 45789999878999999999987211 111112222222222 1223334 34455555 899999998644
No 345
>cd05766 IgC_MHC_II_beta Class II major histocompatibility complex (MHC) beta chain immunoglobulin domain. IgC_MHC_II_beta: Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class II beta chain. MHC class II molecules play a key role in the initiation of the antigen-specific immune reponse. In both humans and in mice these molecules have been shown to be expressed constitutively on the cell surface of professional antigen-presenting cells (APCs), for example on B-lymphocytes, monocytes, and macrophages. The expression of these molecules has been shown to be induced in nonprofessional APCs such as keratinocyctes, and they are expressed on the surface of activated human T cells and on T cells from other species. The MHC II molecules present antigenic peptides to CD4(+) T-lymphocytes. These peptides derive mostly from protelytic processing via the endocytic pathway, of antigens internalized by the APC. These peptides bind to the MHC class II molecules in the endosome be
Probab=97.94 E-value=0.00027 Score=44.53 Aligned_cols=68 Identities=15% Similarity=0.141 Sum_probs=41.1
Q ss_pred ecCCcEEEEEEEeee-CCC-eeEEEECCeEEeeccCCC----cceeEEeeecEEEEccCCCCCCeEEEEEEEeCCcC
Q psy15128 49 GLNGIASFQCVAEGS-PLP-SVFWTQEGSQVLMFPGNA----YGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGS 119 (292)
Q Consensus 49 ~~g~~~~l~C~~~~~-~~~-~v~W~~~~~~~~~~~~~~----~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~~~ 119 (292)
..|+.++|.|.+.|+ |.. .+.|++++..+....... .....+...+.|.+. ..+...|+|.+.+....
T Consensus 12 ~~~~~~~L~C~~~gFyP~~i~v~W~~~g~~~~~~~~~~~~~~~~dgTy~~~s~L~~~---~~~~~~ysC~V~H~~l~ 85 (94)
T cd05766 12 SLSHPHLLVCHVWGFYPPEITVKWFKNGQEETEGVVSTELIPNGDWTYQILVMLETT---PSRGDTYTCVVEHSSLQ 85 (94)
T ss_pred cCCCCeEEEEEEeeecCCCCEEEEEECCeecCCCceecceEECCCCcEEEEEEEEEc---CCCCCEEEEEEEeCCCC
Confidence 357889999999996 433 789999998753210000 011112223345443 34566899999886543
No 346
>cd05769 IgC_TCR_beta T cell receptor (TCR) beta chain constant immunoglobulin domain. IgC_TCR_beta: Constant domain of the beta chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group includes the variable domain of the beta chain. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The antigen binding site is formed by the variable domains of the alpha and beta chains, located at the N-terminus of each chain. Alpha/beta TCRs recognize antigens differently from gamma/delta TCRs.
Probab=97.93 E-value=0.00011 Score=48.08 Aligned_cols=76 Identities=20% Similarity=0.259 Sum_probs=47.5
Q ss_pred cEEecCCcEEEEEEEeee-CC-CeeEEEECCeEEeeccC-----CCcceeEEeeecEEEEccCCCCC-CeEEEEEEEeCC
Q psy15128 46 QKVGLNGIASFQCVAEGS-PL-PSVFWTQEGSQVLMFPG-----NAYGHLHVTQEGTLRIQGVQKED-AGFFVCSALSVA 117 (292)
Q Consensus 46 ~~~~~g~~~~l~C~~~~~-~~-~~v~W~~~~~~~~~~~~-----~~~~~~~~~~~~~l~i~~~~~~d-~g~Y~C~~~~~~ 117 (292)
..+..++.++|.|.+.++ |. ..+.|++++..+..... .......+...+.|.+......+ ...|+|.+.+..
T Consensus 13 ~e~~~~~~~tL~Cla~gFyP~~I~V~W~kng~~l~~g~~~~~~~~~~~~gTYs~~S~L~v~~~~w~~~~~~ytC~V~H~g 92 (115)
T cd05769 13 AEIRNKRKATLVCLATGFYPDHVSLSWKVNGKEVTDGVATDPQALRENTSTYSISSRLRVSATEWFNPRNTFTCIVQFYG 92 (115)
T ss_pred HHhccCCCcEEEEEEEeEeCCCcEEEEEECCEECCCCcccccceecCCCCeEEEEEEEEEChHHhccCCCeEEEEEEEeC
Confidence 334456789999999996 44 37899999976532110 00000233445567777666544 568999998875
Q ss_pred cCee
Q psy15128 118 GSTT 121 (292)
Q Consensus 118 ~~~~ 121 (292)
....
T Consensus 93 ~~~~ 96 (115)
T cd05769 93 GTDT 96 (115)
T ss_pred Cccc
Confidence 4433
No 347
>cd05767 IgC_MHC_II_alpha Class II major histocompatibility complex (MHC) alpha chain immunoglobulin domain. IgC_MHC_II_alpha: Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class II alpha chain. MHC class II molecules play a key role in the initiation of the antigen-specific immune reponse. In both humans and in mice these molecules have been shown to be expressed constitutively on the cell surface of professional antigen-presenting cells (APCs), for example on B-lymphocytes, monocytes, and macrophages. The expression of these molecules has been shown to be induced in nonprofessional APCs such as keratinocyctes, and they are expressed on the surface of activated human T cells and on T cells from other species. The MHC II molecules present antigenic peptides to CD4(+) T-lymphocytes. These peptides derive mostly from protelytic processing via the endocytic pathway, of antigens internalized by the APC. These peptides bind to the MHC class II molecules in the endosom
Probab=97.93 E-value=0.00037 Score=43.84 Aligned_cols=66 Identities=17% Similarity=0.230 Sum_probs=39.4
Q ss_pred cCCcEEEEEEEeee-CC-CeeEEEECCeEEeeccC----CCcceeEEeeecEEEEccCCCCCCeEEEEEEEeCCc
Q psy15128 50 LNGIASFQCVAEGS-PL-PSVFWTQEGSQVLMFPG----NAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAG 118 (292)
Q Consensus 50 ~g~~~~l~C~~~~~-~~-~~v~W~~~~~~~~~~~~----~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~~ 118 (292)
.++..+|.|.+.|+ |. ..++|.++|..+..... .......+.....|.+.. .+...|+|.+.+...
T Consensus 14 ~~~~~tL~C~a~gFyP~~I~v~W~~~g~~~~~~~~~~~~~~~~Dgty~~~s~L~v~~---~~~~~ytC~V~H~~l 85 (94)
T cd05767 14 LGEPNTLICFVDNFFPPVLNVTWLKNGVPVTDGVSETRYYPRQDLSFQKFSYLNFTP---EEGDIYSCIVEHWGL 85 (94)
T ss_pred CCCCeEEEEEEEEEECCcCEEEEEECCeEccCceEEeeeEeCCCCcEEEEEEEEEEC---CCCCeEEEEEEeCCC
Confidence 35668999999996 43 47899999986531100 001111122233565554 455689999987643
No 348
>cd04985 IgC_CH1 CH1 domain (first constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH1: The first immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fab antigen-binding fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=97.91 E-value=0.0002 Score=45.15 Aligned_cols=67 Identities=15% Similarity=0.212 Sum_probs=40.8
Q ss_pred cCCcEEEEEEEeee-CC-CeeEEEECCeEEeec----cCCCcceeEEeeecEEEEccCCCCCCeEEEEEEEeCC
Q psy15128 50 LNGIASFQCVAEGS-PL-PSVFWTQEGSQVLMF----PGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVA 117 (292)
Q Consensus 50 ~g~~~~l~C~~~~~-~~-~~v~W~~~~~~~~~~----~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~ 117 (292)
.++.++|.|.+.|+ |. ..+.|++++.. ... .........+.....|.+..........|+|++.+..
T Consensus 15 ~~~~~~L~C~a~gFyP~~i~vtW~k~g~~-~~~~~~~~~~~~~dgty~~~s~L~v~~~~w~~~~~ytC~V~H~~ 87 (95)
T cd04985 15 SSDSVTLGCLATGFLPEPVTFTWNSGSNS-TSGVKTYPAVLQSGGLYTASSQLTVPASEWKGKESFYCKVEHPS 87 (95)
T ss_pred CCCcEEEEEEEeeEECCCcEEEEeECCEE-CCCcEECCCEeCCCCCEEEEEEEEEeHHHcCCCCcEEEEEEeCC
Confidence 46679999999996 43 37899999986 211 0000001122333456666554444667999998864
No 349
>smart00406 IGv Immunoglobulin V-Type.
Probab=97.88 E-value=9e-05 Score=45.37 Aligned_cols=61 Identities=23% Similarity=0.510 Sum_probs=37.8
Q ss_pred cEEEEEEEeeeCC--CeeEEEECCe----EEeeccC---------CCcceeEEee-----ecEEEEccCCCCCCeEEEEE
Q psy15128 53 IASFQCVAEGSPL--PSVFWTQEGS----QVLMFPG---------NAYGHLHVTQ-----EGTLRIQGVQKEDAGFFVCS 112 (292)
Q Consensus 53 ~~~l~C~~~~~~~--~~v~W~~~~~----~~~~~~~---------~~~~~~~~~~-----~~~l~i~~~~~~d~g~Y~C~ 112 (292)
++.|.|.+..... ..+.|++... ....... ....+..... ...|.|.+++.+|+|.|.|.
T Consensus 1 ~v~l~C~~~~~~~~~~~v~W~~~~~~~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~ 80 (81)
T smart00406 1 SVTLSCKASGFTFSSYYVSWVRQPPGKGLEWLGYIGSSGSTYYQQSYKGRVTISKDTSKNDVSLTISNLRVEDTGTYYCA 80 (81)
T ss_pred CEEEEEEEeccccceeEEEEEEeCCCCCeEEEEEEcCCCcEEECcccCCcEEEEecCcCCEEEEEEcCCCHHHCEEEEEc
Confidence 4789998876543 3789998541 1111110 1123333222 24799999999999999996
Q ss_pred E
Q psy15128 113 A 113 (292)
Q Consensus 113 ~ 113 (292)
+
T Consensus 81 v 81 (81)
T smart00406 81 V 81 (81)
T ss_pred C
Confidence 3
No 350
>cd07704 Ig2_Nectin-3-4_like Second immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3), nectin-4 (poliovirus receptor related protein 4) and similar proteins. Ig2_Nectin-3-4_like: domain similar to the second immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3) and nectin-4 (poliovirus receptor related protein 4). Nectin-3 and nectin-4 belong to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectin-2 and nectin-3 localize at Sertoli-spermatid junctions where they form heterophilic trans-interactions between the cells that are essential for the formation and maintenance of the junctions and for spermatid development. Nect
Probab=97.86 E-value=9e-05 Score=46.50 Aligned_cols=75 Identities=13% Similarity=0.097 Sum_probs=47.5
Q ss_pred cEEecCCcEEE-EEEE-eeeCCCeeEEEECCeEEeeccCCCcceeEEeeecEEEEccCCCCCCeEEEEEEEeCCcCe
Q psy15128 46 QKVGLNGIASF-QCVA-EGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGST 120 (292)
Q Consensus 46 ~~~~~g~~~~l-~C~~-~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~~~~ 120 (292)
..+.+|+.+.+ .|.+ .+.|++.|.|+.+....................+.|.+.....+|...++|.+.+.....
T Consensus 11 ~~~~~g~~~~vA~C~sa~gkPaa~IsW~~~~~G~~~~~~~~~~ngT~TV~S~~~l~p~r~d~G~~vtC~V~H~al~~ 87 (97)
T cd07704 11 LLIDGGNGTTLAACCAAEGRPAADVTWETNVYGTSESHSQEHPNGTTTVTSEYIWVPSRHANGHPLTCVVSHPALQQ 87 (97)
T ss_pred eEeecCcceeEEEEEccCCccCCEeEEeCCCCCccceeeecCCCCCEEEEEEEEEEeCHHHCCcEEEEEEeCcccCC
Confidence 34567788888 8866 457999999998643321111111111234445578887777778888999998875543
No 351
>cd07694 Ig2_CD4 Second immunoglobulin (Ig) domain of CD4. Ig2_CD4; second immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy.
Probab=97.84 E-value=0.00013 Score=44.28 Aligned_cols=63 Identities=21% Similarity=0.349 Sum_probs=43.3
Q ss_pred ceEEeCCCceEEEeeCCCC-CCCCeEEEeEcCeEeccCCCceEEecCCCccccccccccccccccccccceeEEEEe
Q psy15128 207 DTRVASGETALLECGPPKG-QPEPTLHWKKNGQFIDLESSKRVSILGDPWFDSRRSRSIFGSVLGALSDDQWKLIAK 282 (292)
Q Consensus 207 ~~~~~~g~~~~l~C~~~~~-~p~~~~~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~a~ 282 (292)
...+..|++++|+|....+ .|.+.++|.-.+...- .... .....|....+...|+|+++|+++
T Consensus 8 ~~~lL~G~sLtLtl~~~s~s~p~~~i~w~~P~n~~~-------~~~~------~~~ktL~~~qv~~qdSG~WtC~V~ 71 (88)
T cd07694 8 SDHVLSGTNLTLTLHGSSNSLPAFKVEWRGPGNKSK-------QILN------QDKKTLNLVQLGPNDSGTWDCIVS 71 (88)
T ss_pred CCeeecCCcEEEEEecCCCCCCCccEEEeCCCCccc-------eecc------CCccEEEeceeCcccCCEEEEEEE
Confidence 3467889999999997333 3455999987543221 0000 122357788899999999999996
No 352
>cd05712 Ig_Siglec_N Immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins). Ig_Siglec_N: immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins). Siglec refers to a structurally related protein family that specifically recognizes sialic acid in oligosaccharide chains of glycoproteins and glycolipids. Siglecs are type I transmembrane proteins, organized as an extracellular module composed of Ig-like domains (an N-terminal variable set of Ig-like carbohydrate recognition domains, and 1 to 16 constant Ig-like domains), followed by transmembrane and short cytoplasmic domains. Human siglecs are classified into two subgroups, one subgroup is comprised of sialoadhesin (Siglec-1), CD22 (Siglec-2), and MAG, the other subgroup is comprised of CD33-related Siglecs which include CD33 (Siglec-3) and human Siglecs 5-11.
Probab=97.83 E-value=0.00011 Score=48.82 Aligned_cols=79 Identities=15% Similarity=0.125 Sum_probs=46.4
Q ss_pred CcceEEeCCCceEEEeeCCCCCC------CCeEEEeEcC--e----EeccCCCc-eEEecCCCccc-----ccccccccc
Q psy15128 205 PKDTRVASGETALLECGPPKGQP------EPTLHWKKNG--Q----FIDLESSK-RVSILGDPWFD-----SRRSRSIFG 266 (292)
Q Consensus 205 ~~~~~~~~g~~~~l~C~~~~~~p------~~~~~W~~~g--~----~~~~~~~~-~~~~~~~~~~~-----~~~~~~l~i 266 (292)
|..+.+.+|+.|+|.|.. .... ...+.|++.. . .+...... .......+.+. ......|.|
T Consensus 6 P~~v~~~~G~~VtL~C~f-~~~~~~~~~~~~~~~Wykq~~g~~~~~~~~~~~~~~~~~~~f~gR~~~~~~~~~~~~sL~I 84 (119)
T cd05712 6 PKSVSVQEGLCVLIPCSF-SYPADWPVSNGVHGIWYKGHPYPKNRPPVATNNRSRLVHESTRGRFRLLGDLGKKNCSLLI 84 (119)
T ss_pred CCEEEEeccccEEEEEEe-eCcccccCCCceEEEEEeCCCCCCCCCcEEEcCCCccccccccccEEEecCCCCCEEEEEE
Confidence 456789999999999974 2211 2468999842 1 11100100 00000011111 122346999
Q ss_pred ccccccccceeEEEEeec
Q psy15128 267 SVLGALSDDQWKLIAKNI 284 (292)
Q Consensus 267 ~~~~~~~~g~y~C~a~n~ 284 (292)
..++..|+|.|.|.+...
T Consensus 85 ~~l~~~Dsg~Y~C~~~~~ 102 (119)
T cd05712 85 SDAQPEDSGKYFFRVELG 102 (119)
T ss_pred ccCChhhCeEEEEEEEcC
Confidence 999999999999988653
No 353
>cd04981 IgV_H Immunoglobulin (Ig) heavy chain (H), variable (V) domain. IgV_H: Immunoglobulin (Ig) heavy chain (H), variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which can associate with any of the heavy chains. This family includes alpha, gamma, delta, epsilon, and mu heavy chains.
Probab=97.83 E-value=7.8e-05 Score=49.29 Aligned_cols=78 Identities=13% Similarity=0.150 Sum_probs=45.8
Q ss_pred CcceEEeCCCceEEEeeCCCCCC--CCeEEEeEc--C-eE--e-ccCC-CceEEe--cCCCcccc-----cccccccccc
Q psy15128 205 PKDTRVASGETALLECGPPKGQP--EPTLHWKKN--G-QF--I-DLES-SKRVSI--LGDPWFDS-----RRSRSIFGSV 268 (292)
Q Consensus 205 ~~~~~~~~g~~~~l~C~~~~~~p--~~~~~W~~~--g-~~--~-~~~~-~~~~~~--~~~~~~~~-----~~~~~l~i~~ 268 (292)
+....+.+|+.++|.|.. .... ...+.|++- | .+ | .... ...... ...+.+.. .....|.|..
T Consensus 4 ~~~~~v~~G~~vtL~C~~-~~~~~~~~~~~WYkQ~~g~~p~~l~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~I~~ 82 (117)
T cd04981 4 SGPGLVKPGQSLKLSCKA-SGFTFTSYGVNWVRQAPGKGLEWIGFINPGGGETYYADSVKGRFTITRDTSKSTVYLQLNS 82 (117)
T ss_pred CCCeEEcCCCCEEEEEEE-eCCCcccceEEEEEECCCCCcEEEEEEecCCCceEeCcccCCcEEEEEEccCCEEEEEECC
Confidence 346688999999999986 3322 456999983 2 22 1 0000 001000 00111211 1123589999
Q ss_pred ccccccceeEEEEee
Q psy15128 269 LGALSDDQWKLIAKN 283 (292)
Q Consensus 269 ~~~~~~g~y~C~a~n 283 (292)
+..+|+|.|.|.+..
T Consensus 83 ~~~~Dsa~YyCa~~~ 97 (117)
T cd04981 83 LTPEDTAVYYCARGL 97 (117)
T ss_pred CCHHHCEEEEEEEEc
Confidence 999999999999865
No 354
>KOG1480|consensus
Probab=97.83 E-value=3.1e-05 Score=65.03 Aligned_cols=144 Identities=19% Similarity=0.274 Sum_probs=91.2
Q ss_pred CCeEEeCCCCceecCCCeEEEEeEeccCCCCc----eEEEeCCee--CCCCCc---cE------EEc--C------CCcE
Q psy15128 136 PPIVQVGPSNQTLPLHSVAFLPCQAVGSPPPH----IRWYKNGNS--LPPEDT---RI------NVS--S------SGSL 192 (292)
Q Consensus 136 ~~~~~~~~~~~~~~~g~~v~l~C~~~~~p~~~----~~W~~~~~~--l~~~~~---~~------~~~--~------~~~l 192 (292)
.+.+...|....+..+..+.|.|.+...+... -.|..+..- +...+. .. .+. . ..-+
T Consensus 24 l~~~~~~p~~~yii~~~p~~l~c~a~~a~~i~~kc~~~wv~~~~~~~~~~~d~tsg~~~~~~si~Isr~~v~~~~~~~d~ 103 (909)
T KOG1480|consen 24 LPHFTTEPKSAYIIKNKPLRLQCKANPATQIRFKCNSEWVHQSRHEKLEGTDETSGLGVREVSIDISRQQVETSGGPEDY 103 (909)
T ss_pred cceeeecCCccceecCCCccceecCCcccccccccChhhhcCccceeeeccCcccceeEEeeeeeeehhhhhcccCccce
Confidence 44566677788888999999999986654433 246543221 111110 00 000 0 0012
Q ss_pred EEEeeecCCCC--------------------CCcceEEeCCCceEEEeeCCCCCCCCeEEEeEcCeEeccCCCceEEecC
Q psy15128 193 QIDVLRDDFRA--------------------EPKDTRVASGETALLECGPPKGQPEPTLHWKKNGQFIDLESSKRVSILG 252 (292)
Q Consensus 193 ~i~~~~~~d~g--------------------~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~g~~~~~~~~~~~~~~~ 252 (292)
...-+..++.| .|....|..+..+.+.|....+.|...+.|++++..+.. ..++....
T Consensus 104 ~cQc~a~~~~g~~~s~~a~vr~ay~rk~f~~~p~~q~V~~~s~~~l~cr~pe~~paae~~w~k~e~~~~p--d~n~~~~~ 181 (909)
T KOG1480|consen 104 WCQCVAWSDDGTVKSRKATVRIAYLRKHFEQSPVGQEVQEETTLQLPCRPPEGDPKAEVEWLKNEVVIDP--DANVIRAS 181 (909)
T ss_pred eeeeeeecCCCcchhhhHHHHHHHHHHhhccChhhheecccccccccccCcccchhhhhhccccCCCCCc--cccchhhh
Confidence 22223333333 455667888889999999777889999999999987753 33333322
Q ss_pred CCccccccccccccccccccccceeEEEEeecccccc
Q psy15128 253 DPWFDSRRSRSIFGSVLGALSDDQWKLIAKNIRNQQQ 289 (292)
Q Consensus 253 ~~~~~~~~~~~l~i~~~~~~~~g~y~C~a~n~~g~~~ 289 (292)
...+.+..+...|.|+|+|+|.|..+...
T Consensus 182 --------d~~li~~~arlsd~~nytc~a~ni~~~r~ 210 (909)
T KOG1480|consen 182 --------DHNLIISQARLSDSGNYTCEATNIVAKRK 210 (909)
T ss_pred --------cCCccccchhhhhcccceeeeehhhcccc
Confidence 23588999999999999999999988754
No 355
>cd05889 Ig1_DNAM-1_like First immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226) and similar proteins. Ig1_DNAM-1_like: domain similar to the first immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226). DNAM-1 is a transmembrane protein having two Ig-like domains. It is an adhesion molecule which plays a part in tumor-directed cytotoxicity and adhesion in natural killer (NK) cells and T lymphocytes. It has been shown to regulate the NK cell killing of several tumor types, including myeloma cells and ovarian carcinoma cells. DNAM-1 interacts specifically with poliovirus receptor (PVR; CD155) and nectin -2 (CD211), other members of the Ig superfamily. DNAM-1 is expressed in most peripheral T cells, NK cells, monocytes and a subset of B lymphocytes.
Probab=97.81 E-value=0.00014 Score=45.85 Aligned_cols=72 Identities=19% Similarity=0.169 Sum_probs=42.9
Q ss_pred CceEEEeeCCCCCCCCeEEEeEcCe----Eecc-CC--C--------ceEEecCCCccccccccccccccccccccceeE
Q psy15128 214 ETALLECGPPKGQPEPTLHWKKNGQ----FIDL-ES--S--------KRVSILGDPWFDSRRSRSIFGSVLGALSDDQWK 278 (292)
Q Consensus 214 ~~~~l~C~~~~~~p~~~~~W~~~g~----~~~~-~~--~--------~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~ 278 (292)
+.++|.|..........+.|.|-.. .+.. +. + .|+.+.... ....+|.|.++..+|+|.|.
T Consensus 1 ~~vtL~C~~~~~~~~~qV~W~k~~~~~~~~iavy~~~~g~~~~~~y~~Rv~f~~~~----~~d~sI~i~nvt~~D~G~Y~ 76 (96)
T cd05889 1 EKMKLECVYPKTGVLIQVSWTKHNGSHKENIAVYHPIYGMHIEDKYRGRVYFLNST----REDMSLSFNNATEEDVGLYC 76 (96)
T ss_pred CCEEEEeEcCCCCcEEEEEEEEcCCCCCceEEEEECCCCCEECccccCeEEEecCC----CCccEEEEcCCCcccCEEEE
Confidence 4689999964334455889998421 1110 00 1 122222111 12357889999999999999
Q ss_pred EEEeec-ccccc
Q psy15128 279 LIAKNI-RNQQQ 289 (292)
Q Consensus 279 C~a~n~-~g~~~ 289 (292)
|....- .|..+
T Consensus 77 C~~~t~P~g~~~ 88 (96)
T cd05889 77 CSLVTYPQGSWE 88 (96)
T ss_pred EEEEeCCCCCeE
Confidence 999653 55443
No 356
>PF07654 C1-set: Immunoglobulin C1-set domain; InterPro: IPR003597 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents C1-set domains, which are classical Ig-like domains resembling the antibody constant domain. C1-set domains are found almost exclusively in molecules involved in the immune system, such as in immunoglobulin light and heavy chains, in the major histocompatibility complex (MHC) class I and II complex molecules [, ], and in various T-cell receptors.; PDB: 3BVN_D 3BXN_A 3PWV_E 3L9R_F 2XFX_B 1BMG_A 1K8I_A 3M1B_G 3M17_C 1EXU_A ....
Probab=97.80 E-value=0.00024 Score=43.77 Aligned_cols=68 Identities=16% Similarity=0.300 Sum_probs=42.1
Q ss_pred cCCcEEEEEEEeee-CCC-eeEEEECCeEEeeccCCC----cceeEEeeecEEEEccCCCCCCeEEEEEEEeCCcCe
Q psy15128 50 LNGIASFQCVAEGS-PLP-SVFWTQEGSQVLMFPGNA----YGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGST 120 (292)
Q Consensus 50 ~g~~~~l~C~~~~~-~~~-~v~W~~~~~~~~~~~~~~----~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~~~~ 120 (292)
.++.++|.|.+.++ |.. .|.|++++..+....... .....+...+.|.+. ..+...|+|.+.+.....
T Consensus 7 ~~~~~~L~C~v~~f~P~~i~v~W~~~~~~~~~~~~~~~~~~~~dgty~~~s~l~v~---~~~~~~ysC~V~H~~l~~ 80 (83)
T PF07654_consen 7 LGGSVTLTCLVSGFYPKDITVTWLKNGKEVTEGVETTPPPPNSDGTYSVTSSLTVT---WNSGDEYSCRVTHESLPE 80 (83)
T ss_dssp STSEEEEEEEEEEEBSSTEEEEEEETTEEETTTEEEEEEEEETTSEEEEEEEEEEE---TTTTGGEEEEEEETTSSS
T ss_pred CCCCEEEEEEEEEEECCCcEEEEEeccceeeeeeeecccccccccceeeeEEEEec---CCCCCEEEEEEEECCCCC
Confidence 37889999999986 433 799999988653110000 011122223355555 566668999999876543
No 357
>cd07697 IgC_TCR_gamma T cell receptor (TCR) gamma chain constant immunoglobulin domain. IgC_TCR_gamma; immunoglobulin (Ig) constant (C) domain of the gamma chain of gamma-delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha-beta TCRs but a small subset contain gamma-delta TCRs. Alpha-beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma-delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma-delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds.
Probab=97.80 E-value=5e-05 Score=47.84 Aligned_cols=69 Identities=14% Similarity=0.120 Sum_probs=39.3
Q ss_pred CCCceEEEeeCCCCCCCC-eEEEeEcCeEeccCCCceEEecCCCccccccccccccccccccccc-eeEEEEeecc
Q psy15128 212 SGETALLECGPPKGQPEP-TLHWKKNGQFIDLESSKRVSILGDPWFDSRRSRSIFGSVLGALSDD-QWKLIAKNIR 285 (292)
Q Consensus 212 ~g~~~~l~C~~~~~~p~~-~~~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g-~y~C~a~n~~ 285 (292)
.+..++|.|.|...+|.. .++|.+||+.+............+..|... ..|.+ .+.+.| .|+|.++...
T Consensus 15 ~~~~~tL~C~a~gFyP~~I~v~W~kng~~~~~~~~~~~~~~~~dty~~~--S~L~v---t~~~~~~~ysC~V~H~g 85 (96)
T cd07697 15 KQGQGIYLCLLENFFPDVIQVHWREGNSPSILGSQKSEKDKDNDVYSTT--SWLTV---TKDSLGKKFRCIYKHEG 85 (96)
T ss_pred cCCCEEEEEEEEEEeCCCeEEEEEECCEECcCCeEeccEecCCCEEEEE--EEEEE---CchhCCCeEEEEEEECC
Confidence 466789999995546644 889999999875322111122222233322 22322 233234 6999998743
No 358
>cd04986 IgC_CH2 CH2 domain (second constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH2: The second immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=97.79 E-value=0.00015 Score=45.79 Aligned_cols=73 Identities=16% Similarity=0.198 Sum_probs=44.7
Q ss_pred cEEecCCcEEEEEEEeeeC---CCeeEEEECCeEEee-ccCCCcceeEEeeecEEEEccCCCCCCeEEEEEEEeCCc
Q psy15128 46 QKVGLNGIASFQCVAEGSP---LPSVFWTQEGSQVLM-FPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAG 118 (292)
Q Consensus 46 ~~~~~g~~~~l~C~~~~~~---~~~v~W~~~~~~~~~-~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~~ 118 (292)
..+..+..++|.|.+.++. ...|.|.+++..-.. ..........+...+.|.+..-.......|+|.+.+...
T Consensus 14 e~l~~~~~atLtClV~~f~~P~~i~V~W~~~g~~~~~~t~~~~~~dgTys~~S~L~v~~~~W~~g~~ytC~V~H~~l 90 (99)
T cd04986 14 EDLLLGSSASLTCTLSGLRDPEGAVFTWTPSGGKEAVQTSAESDQCGCYSVSSVLPGCAEEWNKGEPFACTVTHPEG 90 (99)
T ss_pred HHhCcCCccEEEEEEeccCCCCCeEEEEEECCccCcEEcCcccCCCCCEEEEEEEEeCHHHhcCCCeEEEEEECCCc
Confidence 3454678899999999854 237999998764111 111111122333445677665555556679999987654
No 359
>cd05720 Ig_CD8_alpha Immunoglobulin (Ig) like domain of CD8 alpha chain. Ig_CD8_alpha: immunoglobulin (Ig)-like domain in CD8 alpha. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alphaalpha or alphabeta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a v-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain. The Ig domain of CD8 alpha binds to antibodies.
Probab=97.77 E-value=5.6e-05 Score=48.81 Aligned_cols=74 Identities=11% Similarity=0.102 Sum_probs=44.0
Q ss_pred EEeCCCceEEEeeCCCCCCCCeEEEeEcC----eE---ec-cCCCceEEecC----CCcccc---ccccccccccccccc
Q psy15128 209 RVASGETALLECGPPKGQPEPTLHWKKNG----QF---ID-LESSKRVSILG----DPWFDS---RRSRSIFGSVLGALS 273 (292)
Q Consensus 209 ~~~~g~~~~l~C~~~~~~p~~~~~W~~~g----~~---~~-~~~~~~~~~~~----~~~~~~---~~~~~l~i~~~~~~~ 273 (292)
.+.+|++|+|.|.+ .......+.|++.. .. |. ........... ...+.. .....|.|..++.+|
T Consensus 2 ~v~~G~~vtL~C~~-~~~~~~~v~Wyrq~~g~~~~~~~l~~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~L~I~~~~~sD 80 (104)
T cd05720 2 DAELGQKVELKCEV-LNSSPTGCSWLFQPPGSAPQPTFLVYLSGSSKITWDEEELSSKRFSGSRSSNSFVLTLKNFQKEN 80 (104)
T ss_pred cccCCCeEEEEEEe-cCCCCCcEEEEEeCCCCCCCCEEEEEEeCCCCeeeccccCCCceEEEEecCCEEEEEECCCCHHH
Confidence 36789999999997 44444579999832 11 11 11100100000 111111 233469999999999
Q ss_pred cceeEEEEee
Q psy15128 274 DDQWKLIAKN 283 (292)
Q Consensus 274 ~g~y~C~a~n 283 (292)
+|+|.|.+.+
T Consensus 81 sgtY~Ca~~~ 90 (104)
T cd05720 81 EGYYFCSVAS 90 (104)
T ss_pred CEEEEEEEcc
Confidence 9999999864
No 360
>cd07697 IgC_TCR_gamma T cell receptor (TCR) gamma chain constant immunoglobulin domain. IgC_TCR_gamma; immunoglobulin (Ig) constant (C) domain of the gamma chain of gamma-delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha-beta TCRs but a small subset contain gamma-delta TCRs. Alpha-beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma-delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma-delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds.
Probab=97.77 E-value=0.0007 Score=42.70 Aligned_cols=68 Identities=15% Similarity=0.207 Sum_probs=40.5
Q ss_pred EEecCCcEEEEEEEeee-CC-CeeEEEECCeEEeecc----CCCcceeEEeeecEEEEccCCCCCCeEEEEEEEeCC
Q psy15128 47 KVGLNGIASFQCVAEGS-PL-PSVFWTQEGSQVLMFP----GNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVA 117 (292)
Q Consensus 47 ~~~~g~~~~l~C~~~~~-~~-~~v~W~~~~~~~~~~~----~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~ 117 (292)
.+..+..++|.|.+.++ |. ..+.|.++|..+.... ...... .+...+.|.+..-. ....|+|.+.+..
T Consensus 12 e~~~~~~~tL~C~a~gFyP~~I~v~W~kng~~~~~~~~~~~~~~~~d-ty~~~S~L~vt~~~--~~~~ysC~V~H~g 85 (96)
T cd07697 12 EIEKQGQGIYLCLLENFFPDVIQVHWREGNSPSILGSQKSEKDKDND-VYSTTSWLTVTKDS--LGKKFRCIYKHEG 85 (96)
T ss_pred HHccCCCEEEEEEEEEEeCCCeEEEEEECCEECcCCeEeccEecCCC-EEEEEEEEEECchh--CCCeEEEEEEECC
Confidence 34446778999999996 43 3689999987642110 000111 33334456665443 2345999998753
No 361
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=97.75 E-value=0.042 Score=54.25 Aligned_cols=215 Identities=12% Similarity=0.190 Sum_probs=119.8
Q ss_pred CCcCCCeeEEEEE--EecccccccccEEEEEeCC-CcEEeCCCccEEecCCcEEEEEEEeeeCCCeeEEEECCeEEeecc
Q psy15128 5 VKKSDEGKYQCYV--QNMVGERETKPALLTVHAP-PSFVVRPQDQKVGLNGIASFQCVAEGSPLPSVFWTQEGSQVLMFP 81 (292)
Q Consensus 5 v~~~D~G~Y~C~~--~~~~~~~~~~~~~l~v~~~-p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~ 81 (292)
+...+.|.|.-.+ .|..|..... ..+.|..+ ..+.+......+..|+.+.|.-.........+.|..++......+
T Consensus 1664 vt~~~pG~Y~VtL~aSN~vG~~t~s-~~i~v~epi~~L~L~aS~~~aavn~~V~fs~~lt~GS~vty~W~~gdG~s~~~s 1742 (2740)
T TIGR00864 1664 LNPLEAGPCDIFLQAANLLGQATAD-CTIDFLEPAGNLMLQASDNPAAVNALINLSAELAEGSGLQYRWFLEEGDDLETS 1742 (2740)
T ss_pred EecCCCceEEEEEEEeecccceeeE-EEEEEEEEcCceEEeccCCcccCCCeEEEEEEecCCCCcEEEEEECCCCCcccC
Confidence 3456778776544 4666665544 44455443 334445455567778999988766666667899987654211000
Q ss_pred CCCcceeEEeeecEEEEccCCCCCCeEEEEE--EEeCCcCeeEEEEEEEEeecCCCCCeEEeCCC-Cc-eecCCCeEEEE
Q psy15128 82 GNAYGHLHVTQEGTLRIQGVQKEDAGFFVCS--ALSVAGSTTVRAFLQVTSVEDTPPPIVQVGPS-NQ-TLPLHSVAFLP 157 (292)
Q Consensus 82 ~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~--~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~-~~-~~~~g~~v~l~ 157 (292)
... . . -+-...|.|... +.|..+....+..+.|.. ......+..... .. .+..|..+.|.
T Consensus 1743 ~p~---~------t-----Htf~~~G~y~VtVta~N~vss~~~s~~V~Vqe--pV~GL~i~~~~~~~~~~~~ag~~v~F~ 1806 (2740)
T TIGR00864 1743 EPF---M------S-----HSFPSAGLHLVTMKAFNELGSANASEEVDVQE--PISGLKIRAADAGEQNFFAADSSVCFQ 1806 (2740)
T ss_pred CCc---e------E-----EEccCCceEEEEEEEEccccccceeEEEEEEe--ccccceEecCCCCcccceecCcEEEEE
Confidence 000 0 0 012456788655 557777666655555543 222233322211 11 45568888887
Q ss_pred eEeccCCCCceEEEeCCeeCCCC-CccEEEcCCCcEEEEeeecCCCC-------------------CCcceEEeCCCceE
Q psy15128 158 CQAVGSPPPHIRWYKNGNSLPPE-DTRINVSSSGSLQIDVLRDDFRA-------------------EPKDTRVASGETAL 217 (292)
Q Consensus 158 C~~~~~p~~~~~W~~~~~~l~~~-~~~~~~~~~~~l~i~~~~~~d~g-------------------~~~~~~~~~g~~~~ 217 (292)
-.+....+..+.|.+++..-... ...+.....|.+.|.-...++-+ ......+..|+.++
T Consensus 1807 a~vstGsnVsw~W~f~~g~s~~gk~v~~Tf~~aG~ytV~L~AsN~vs~~~~s~~~~VQe~I~~L~L~as~~~~~~n~~v~ 1886 (2740)
T TIGR00864 1807 GELATGTNVSWCWAIDGGSSKMGKHACMTFPDAGTFAIRLNASNAVSGKSASREFFAEEPIFGLELKASKKIAAIGEKVE 1886 (2740)
T ss_pred EEccCCCeeEEEEEeCCCCccccceeEEecCCCeEEEEEEEEEcccCcceeeeeEEEEEecceEEEecccccccCCCEEE
Confidence 77543335578888875532222 12244445566655533333333 11233456899999
Q ss_pred EEeeCCCCCCCCeEEEeEcC
Q psy15128 218 LECGPPKGQPEPTLHWKKNG 237 (292)
Q Consensus 218 l~C~~~~~~p~~~~~W~~~g 237 (292)
|++.+ ...+...+.|.+++
T Consensus 1887 fsa~l-~~GS~Vtf~w~fGd 1905 (2740)
T TIGR00864 1887 FQILL-AAGSAVNFRLQIGG 1905 (2740)
T ss_pred EEEEe-cCCCceEEEEEeCC
Confidence 99987 55557899999864
No 362
>cd07692 Ig_CD3_epsilon Immunoglobulin (Ig)-like domain of CD3 epsilon chain. Ig_CD3_epsilon; immunoglobulin (Ig)-like domain of CD3 epsilon chain. CD3 is a T cell surface receptor that is associated with alpha/beta T cell receptors (TCRs). The CD3 complex consists of one gamma, one delta, two epsilon, and two zeta chains. The CD3 subunits form heterodimers as gamma/epsilon, delta/epsilon, and zeta/zeta. The gamma, delta, and epsilon chains each contain an extracellular Ig domain, whereas the extracellular domains of the zeta chains are very small and have unknown structure. The CD3 domain participates in intracellular signalling once the TCR has bound an MHC/antigen complex.
Probab=97.70 E-value=8.5e-05 Score=42.23 Aligned_cols=52 Identities=27% Similarity=0.347 Sum_probs=33.9
Q ss_pred eCCCceEEEeeCCCCCCCCeEEEeEcCeEeccCCCceEEecCCCccccccccccccccccccccceeEEEEeec
Q psy15128 211 ASGETALLECGPPKGQPEPTLHWKKNGQFIDLESSKRVSILGDPWFDSRRSRSIFGSVLGALSDDQWKLIAKNI 284 (292)
Q Consensus 211 ~~g~~~~l~C~~~~~~p~~~~~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~a~n~ 284 (292)
..|..|+|+|.. .+ ..+.|.++++.+.. ++... ...... +++|.|.|.+.+.
T Consensus 5 isGTtVtlTCP~-~~---~~i~W~~n~~~~~g-~~~~~----------------~~~~~~-e~~G~Y~C~~~~~ 56 (65)
T cd07692 5 ISGTTVTVTCPL-SG---DDIKWKKNDQVSQG-SDEKY----------------LSLNHF-SSSGYYHCTADNA 56 (65)
T ss_pred EeccEEEEECCC-CC---CCceEEeCCccCCC-CCceE----------------EeeccC-CCCceEEEEeCCC
Confidence 468999999985 32 23999999866532 11111 122223 6899999999754
No 363
>cd04986 IgC_CH2 CH2 domain (second constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH2: The second immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=97.65 E-value=0.0001 Score=46.52 Aligned_cols=75 Identities=13% Similarity=0.184 Sum_probs=43.2
Q ss_pred EeCCCceEEEeeCCCCC-CC-CeEEEeEcCeEeccCCCceEEecCCCccccccccccccccccccccceeEEEEeecccc
Q psy15128 210 VASGETALLECGPPKGQ-PE-PTLHWKKNGQFIDLESSKRVSILGDPWFDSRRSRSIFGSVLGALSDDQWKLIAKNIRNQ 287 (292)
Q Consensus 210 ~~~g~~~~l~C~~~~~~-p~-~~~~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~a~n~~g~ 287 (292)
...+..++|.|.+.+.+ |. ..+.|.++|.. . ..........++.|... ..|.+..-.......|+|.+.+....
T Consensus 16 l~~~~~atLtClV~~f~~P~~i~V~W~~~g~~-~-~~~t~~~~~~dgTys~~--S~L~v~~~~W~~g~~ytC~V~H~~l~ 91 (99)
T cd04986 16 LLLGSSASLTCTLSGLRDPEGAVFTWTPSGGK-E-AVQTSAESDQCGCYSVS--SVLPGCAEEWNKGEPFACTVTHPEGD 91 (99)
T ss_pred hCcCCccEEEEEEeccCCCCCeEEEEEECCcc-C-cEEcCcccCCCCCEEEE--EEEEeCHHHhcCCCeEEEEEECCCcc
Confidence 34678899999995545 53 48999999875 1 11112222334433322 23333322233344799999987664
Q ss_pred c
Q psy15128 288 Q 288 (292)
Q Consensus 288 ~ 288 (292)
.
T Consensus 92 ~ 92 (99)
T cd04986 92 Q 92 (99)
T ss_pred c
Confidence 3
No 364
>PHA02633 hypothetical protein; Provisional
Probab=97.64 E-value=0.00019 Score=39.96 Aligned_cols=39 Identities=15% Similarity=0.232 Sum_probs=32.5
Q ss_pred eecEEEEccCCCCCCeEEEEEEEeCCcCeeEEEEEEEEe
Q psy15128 92 QEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVTS 130 (292)
Q Consensus 92 ~~~~l~i~~~~~~d~g~Y~C~~~~~~~~~~~~~~l~v~~ 130 (292)
....|.|.++..+|+|.|.|.++|.......+..+.|..
T Consensus 16 ~~~nLwilpa~~sDSGiYiC~~rn~t~c~~~si~l~V~~ 54 (63)
T PHA02633 16 NCNNMLILNPTQSDSGIYMCITKNETYSDMMKFDLCICL 54 (63)
T ss_pred ccccEEEeccccccCcEEEEEEcCCCeeEEEEEEEEEee
Confidence 345799999999999999999998877777777777753
No 365
>cd07704 Ig2_Nectin-3-4_like Second immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3), nectin-4 (poliovirus receptor related protein 4) and similar proteins. Ig2_Nectin-3-4_like: domain similar to the second immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3) and nectin-4 (poliovirus receptor related protein 4). Nectin-3 and nectin-4 belong to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectin-2 and nectin-3 localize at Sertoli-spermatid junctions where they form heterophilic trans-interactions between the cells that are essential for the formation and maintenance of the junctions and for spermatid development. Nect
Probab=97.61 E-value=0.0003 Score=44.16 Aligned_cols=74 Identities=11% Similarity=0.128 Sum_probs=46.0
Q ss_pred ceEEeCCCceEE-EeeCCCCCCCCeEEEeEcCeEeccCCCceEEecCCCccccccccccccccccccccc-eeEEEEeec
Q psy15128 207 DTRVASGETALL-ECGPPKGQPEPTLHWKKNGQFIDLESSKRVSILGDPWFDSRRSRSIFGSVLGALSDD-QWKLIAKNI 284 (292)
Q Consensus 207 ~~~~~~g~~~~l-~C~~~~~~p~~~~~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g-~y~C~a~n~ 284 (292)
...+.+|+.+.+ .|.+..+.|++.|.|+.+..-. .........++.+. ....+.+. ....|.| .++|.+.+.
T Consensus 10 ~~~~~~g~~~~vA~C~sa~gkPaa~IsW~~~~~G~---~~~~~~~~~ngT~T--V~S~~~l~-p~r~d~G~~vtC~V~H~ 83 (97)
T cd07704 10 SLLIDGGNGTTLAACCAAEGRPAADVTWETNVYGT---SESHSQEHPNGTTT--VTSEYIWV-PSRHANGHPLTCVVSHP 83 (97)
T ss_pred eeEeecCcceeEEEEEccCCccCCEeEEeCCCCCc---cceeeecCCCCCEE--EEEEEEEE-eCHHHCCcEEEEEEeCc
Confidence 456678899999 9999889999999999863221 11122222333322 22234443 3444555 999999887
Q ss_pred cc
Q psy15128 285 RN 286 (292)
Q Consensus 285 ~g 286 (292)
.=
T Consensus 84 al 85 (97)
T cd07704 84 AL 85 (97)
T ss_pred cc
Confidence 43
No 366
>cd04985 IgC_CH1 CH1 domain (first constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH1: The first immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fab antigen-binding fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=97.61 E-value=0.00017 Score=45.51 Aligned_cols=71 Identities=11% Similarity=0.166 Sum_probs=40.2
Q ss_pred CCCceEEEeeCCCCCCCC-eEEEeEcCeEeccCC-CceEEecCCCccccccccccccccccccccceeEEEEeecc
Q psy15128 212 SGETALLECGPPKGQPEP-TLHWKKNGQFIDLES-SKRVSILGDPWFDSRRSRSIFGSVLGALSDDQWKLIAKNIR 285 (292)
Q Consensus 212 ~g~~~~l~C~~~~~~p~~-~~~W~~~g~~~~~~~-~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~a~n~~ 285 (292)
.++.++|.|.|...+|.. .++|++||+. .... ........++.|... ..|.+..-.......|+|.++...
T Consensus 15 ~~~~~~L~C~a~gFyP~~i~vtW~k~g~~-~~~~~~~~~~~~~dgty~~~--s~L~v~~~~w~~~~~ytC~V~H~~ 87 (95)
T cd04985 15 SSDSVTLGCLATGFLPEPVTFTWNSGSNS-TSGVKTYPAVLQSGGLYTAS--SQLTVPASEWKGKESFYCKVEHPS 87 (95)
T ss_pred CCCcEEEEEEEeeEECCCcEEEEeECCEE-CCCcEECCCEeCCCCCEEEE--EEEEEeHHHcCCCCcEEEEEEeCC
Confidence 456799999995445644 8899999997 3221 111222224444322 123333222222558999999865
No 367
>cd05902 Ig_Neurocan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan. Ig_Neurocan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Unlike aggrecan which is widely distributed in connective tissue and extracellular matrices, neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many differen
Probab=97.60 E-value=0.00018 Score=46.70 Aligned_cols=25 Identities=12% Similarity=-0.102 Sum_probs=21.7
Q ss_pred ccccccccccccccceeEEEEeecc
Q psy15128 261 SRSIFGSVLGALSDDQWKLIAKNIR 285 (292)
Q Consensus 261 ~~~l~i~~~~~~~~g~y~C~a~n~~ 285 (292)
...|.|.+++.+|+|.|.|.+....
T Consensus 71 ~asL~i~nv~~~D~G~Y~C~v~~g~ 95 (110)
T cd05902 71 NASLVLSRLRYSDSGTYRCEVVLGI 95 (110)
T ss_pred eEEEEECCCCHHHCEEEEEEEEECC
Confidence 3578999999999999999998744
No 368
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=97.50 E-value=0.13 Score=51.19 Aligned_cols=217 Identities=12% Similarity=0.134 Sum_probs=120.9
Q ss_pred CCcCCCeeEEEEEE--ecccccccccEEEEEeCCC-cEEeCCCccEEecCCcEEEEEEEeeeCCCeeEEEECCeEEeec-
Q psy15128 5 VKKSDEGKYQCYVQ--NMVGERETKPALLTVHAPP-SFVVRPQDQKVGLNGIASFQCVAEGSPLPSVFWTQEGSQVLMF- 80 (292)
Q Consensus 5 v~~~D~G~Y~C~~~--~~~~~~~~~~~~l~v~~~p-~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~- 80 (292)
.+..+.|.|.-.+. |..+..... -.+.|+.+. .+.+......+..|+.++|.+.+...+...+.|..++..-...
T Consensus 1834 ~Tf~~aG~ytV~L~AsN~vs~~~~s-~~~~VQe~I~~L~L~as~~~~~~n~~v~fsa~l~~GS~Vtf~w~fGdgs~~~~t 1912 (2740)
T TIGR00864 1834 MTFPDAGTFAIRLNASNAVSGKSAS-REFFAEEPIFGLELKASKKIAAIGEKVEFQILLAAGSAVNFRLQIGGAAPEVLQ 1912 (2740)
T ss_pred EecCCCeEEEEEEEEEcccCcceee-eeEEEEEecceEEEecccccccCCCEEEEEEEecCCCceEEEEEeCCCCceeec
Confidence 45678999976554 555554444 667777665 3445556667888999999998877677788898765432111
Q ss_pred cCCCcceeEEeeecEEEEccCCCCCCeEEEE--EEEeCCcCeeEEEEEEEEeecCCCCCeEEeCCC-CceecCCCeEEEE
Q psy15128 81 PGNAYGHLHVTQEGTLRIQGVQKEDAGFFVC--SALSVAGSTTVRAFLQVTSVEDTPPPIVQVGPS-NQTLPLHSVAFLP 157 (292)
Q Consensus 81 ~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C--~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~-~~~~~~g~~v~l~ 157 (292)
++.. +. =.-..-|.|.. .+.|..+.......+.|.. .. .-+.+... ...+..|+..++.
T Consensus 1913 ~~~t-------------~~-HsY~~~G~Y~VtV~A~N~Vs~~~a~~~V~Vle--~V--~gL~I~~~c~~~~~~g~~~tF~ 1974 (2740)
T TIGR00864 1913 PGPR-------------FS-HSFPRVDDHMVNLRAKNEVSCAQANLHIEVLE--AV--RGLQIPDCCAAGIATGEEKNFT 1974 (2740)
T ss_pred CCCe-------------EE-eecCCCCcEEEEEEEEeccceeeeeEEEEEEE--ec--cceEecCCcccceecCceEEEE
Confidence 1110 00 01123455654 4557666655555554432 21 12222222 1125789999999
Q ss_pred eEeccCCCCceEEEeCCeeCCC-------C-CccEEEcCCCcEEEEeeecCCCCCC-------------------cceEE
Q psy15128 158 CQAVGSPPPHIRWYKNGNSLPP-------E-DTRINVSSSGSLQIDVLRDDFRAEP-------------------KDTRV 210 (292)
Q Consensus 158 C~~~~~p~~~~~W~~~~~~l~~-------~-~~~~~~~~~~~l~i~~~~~~d~g~~-------------------~~~~~ 210 (292)
-.+....+..+.|++.-..+.. + ...+.....|.|.|.-...++-|.. .....
T Consensus 1975 A~v~~g~~V~f~W~f~~~~~~g~~~~~~~G~~vty~~~~~G~~~I~v~A~N~l~s~n~t~~i~VQ~~i~~~~L~~~p~~~ 2054 (2740)
T TIGR00864 1975 ANVQRGKPVAFAWTFDLHHLHGDSLVIHMGKDVSYTAEAAGLLEIQLGAFNALGAENITLQLEAQDALMDAALQAGPQDC 2054 (2740)
T ss_pred EEEecCCceEEEEEeeecccCCCcceeecCCceEEccCCCcEEEEEEEEEcccCcccccEEEEEEeheeeEEEeecCcce
Confidence 9885555667999865222111 1 1222233445555543332222200 12234
Q ss_pred eCCCceEEEeeCCCCCCCCeEEEeEc-CeEe
Q psy15128 211 ASGETALLECGPPKGQPEPTLHWKKN-GQFI 240 (292)
Q Consensus 211 ~~g~~~~l~C~~~~~~p~~~~~W~~~-g~~~ 240 (292)
..+..+.|+|.+..+.....+.|.++ |...
T Consensus 2055 ~~n~~v~f~~~~~~~~~~v~~~WDFGDGt~~ 2085 (2740)
T TIGR00864 2055 FTNKMAQFEAATSPKPNFMACHWDFGDGSAG 2085 (2740)
T ss_pred ecCceEEEEEEEccCCCcEEEEEEecCCCCc
Confidence 45888999999733333468999996 4443
No 369
>cd07689 Ig2_VCAM-1 Second immunoglobulin (Ig)-like domain of vascular endothelial cell adhesion molecule-1 (VCAM-1, CD106) and intercellular cell adhesion molecule-1 (ICAM-1, CD54) and similar proteins. Ig2_ VCAM-1_like: domain similar to the second immunoglobulin (Ig)-like domain of vascular endothelial cell adhesion molecule-1 (VCAM-1, CD106). During the inflammation process, these molecules recruit leukocytes onto the vascular endothelium before extravasation to the injured tissues. The interaction of VCAM-1 binding to the beta1 integrin very late antigen (VLA-4) expressed by lymphocytes and monocytes mediates the adhesion of leucocytes to blood vessel walls, and regulates migration across the endothelium. During metastasis, some circulating cancer cells extravasate to a secondary site by a similar process. VCAM-1 may be involved in organ targeted tumor metastasis and may also act as host receptors for viruses and parasites. VCAM-1 contains seven Ig domains.
Probab=97.48 E-value=0.00048 Score=43.02 Aligned_cols=74 Identities=12% Similarity=-0.021 Sum_probs=43.2
Q ss_pred EEeCCCceEEEeeCCCCCCC--CeEEEeEcCeEeccCCCceEEecCCCccccccccccccccccccccc-eeEEEEeecc
Q psy15128 209 RVASGETALLECGPPKGQPE--PTLHWKKNGQFIDLESSKRVSILGDPWFDSRRSRSIFGSVLGALSDD-QWKLIAKNIR 285 (292)
Q Consensus 209 ~~~~g~~~~l~C~~~~~~p~--~~~~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g-~y~C~a~n~~ 285 (292)
.+.+|..++|.|.|....|. ..+.|+++...+... ...-..+..-.......+.+.. ..+|.| .|.|.|.=..
T Consensus 11 ~l~~G~~vtv~C~v~~v~P~~~l~v~LlkG~~~l~~~---~f~~~~~~ks~~~~~~~vtftp-treD~g~~fsC~A~L~l 86 (99)
T cd07689 11 PLEEGKPVTVKCEVPDVYPFDRLEIELLKGETLLPSK---SFLEDMDKKSLETKSLEVTFTP-TIEDIGKVLVCRAKLHI 86 (99)
T ss_pred cccCCceEEEEEEecCcccCCceEEEEecCcceeccc---ccccccccCCCCCcceeEEEec-chhhCCcEEEEEEEEee
Confidence 34789999999999767776 589999877666311 1110000000001112233333 477777 9999998444
Q ss_pred c
Q psy15128 286 N 286 (292)
Q Consensus 286 g 286 (292)
+
T Consensus 87 ~ 87 (99)
T cd07689 87 D 87 (99)
T ss_pred c
Confidence 3
No 370
>PHA02633 hypothetical protein; Provisional
Probab=97.38 E-value=0.00027 Score=39.42 Aligned_cols=34 Identities=26% Similarity=0.289 Sum_probs=27.1
Q ss_pred cccCCcCCCeeEEEEEEecccccccccEEEEEeCC
Q psy15128 2 ITEVKKSDEGKYQCYVQNMVGERETKPALLTVHAP 36 (292)
Q Consensus 2 i~~v~~~D~G~Y~C~~~~~~~~~~~~~~~l~v~~~ 36 (292)
|-++..+|+|.|.|.++|..-....+ +.|.|...
T Consensus 22 ilpa~~sDSGiYiC~~rn~t~c~~~s-i~l~V~~~ 55 (63)
T PHA02633 22 ILNPTQSDSGIYMCITKNETYSDMMK-FDLCICLR 55 (63)
T ss_pred EeccccccCcEEEEEEcCCCeeEEEE-EEEEEeec
Confidence 56788999999999999877666656 77777654
No 371
>cd05901 Ig_Versican Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican. Ig_Versican: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Like aggrecan, versican has a wide distribution in connective tissue and extracellular matrices. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA
Probab=97.35 E-value=0.0009 Score=43.69 Aligned_cols=28 Identities=14% Similarity=-0.031 Sum_probs=23.8
Q ss_pred cccccccccccccceeEEEEeecccccc
Q psy15128 262 RSIFGSVLGALSDDQWKLIAKNIRNQQQ 289 (292)
Q Consensus 262 ~~l~i~~~~~~~~g~y~C~a~n~~g~~~ 289 (292)
.+|.|..++..|+|.|.|.+.+.....+
T Consensus 79 asL~i~~v~~sD~G~Y~C~V~~g~~~~~ 106 (117)
T cd05901 79 ASLTIVKLRASDAGVYRCEVMHGIEDTQ 106 (117)
T ss_pred eEEEEcccccccCEEEEEEEEECCcccE
Confidence 5788999999999999999988765543
No 372
>cd07691 Ig_CD3_gamma_delta Immunoglobulin (Ig)-like domain of CD3 gamma and delta chains. Ig_CD3_gamma_delta; immunoglobulin (Ig)-like domain of CD3 gamma and delta chains. CD3 is a T cell surface receptor that is associated with alpha/beta T cell receptors (TCRs). The CD3 complex consists of one gamma, one delta, two epsilon, and two zeta chains. The CD3 subunits form heterodimers as gamma/epsilon, delta/epsilon, and zeta/zeta. The gamma, delta, and epsilon chains each contain an extracellular Ig domain, whereas the extracellular domains of the zeta chains are very small and have unknown structure. The CD3 domain participates in intracellular signalling once the TCR has bound an MHC/antigen complex.
Probab=97.32 E-value=0.00088 Score=38.45 Aligned_cols=49 Identities=18% Similarity=0.506 Sum_probs=36.0
Q ss_pred CCcEEEEEEEeeeCCCeeEEEECCeEEeeccCCCcceeEEeeecEEEEccCCCCCCeEEEEEEEe
Q psy15128 51 NGIASFQCVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALS 115 (292)
Q Consensus 51 g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~ 115 (292)
.+.|.|.|.. ..+|.|++ |..+. ... ...|.+.....+-.|.|.|.+.+
T Consensus 6 ~~~V~L~C~~----~tsi~W~k-G~~~~----------~~~-~~tlnLGs~~~DPRG~Y~C~~s~ 54 (69)
T cd07691 6 EGKVFLKCNG----ATNITWKK-GKEIL----------EVS-NTLLDLGSRINDPRGTYSCKESE 54 (69)
T ss_pred CceEEEEecC----CCcEEEec-Ccccc----------ccc-ccEEeccCcccCCCcceEecCcc
Confidence 4579999965 24699999 54432 011 45788888999999999998865
No 373
>cd07692 Ig_CD3_epsilon Immunoglobulin (Ig)-like domain of CD3 epsilon chain. Ig_CD3_epsilon; immunoglobulin (Ig)-like domain of CD3 epsilon chain. CD3 is a T cell surface receptor that is associated with alpha/beta T cell receptors (TCRs). The CD3 complex consists of one gamma, one delta, two epsilon, and two zeta chains. The CD3 subunits form heterodimers as gamma/epsilon, delta/epsilon, and zeta/zeta. The gamma, delta, and epsilon chains each contain an extracellular Ig domain, whereas the extracellular domains of the zeta chains are very small and have unknown structure. The CD3 domain participates in intracellular signalling once the TCR has bound an MHC/antigen complex.
Probab=97.32 E-value=0.00041 Score=39.50 Aligned_cols=51 Identities=14% Similarity=0.325 Sum_probs=33.9
Q ss_pred ecCCcEEEEEEEeeeCCCeeEEEECCeEEeeccCCCcceeEEeeecEEEEccCCCCCCeEEEEEEEe
Q psy15128 49 GLNGIASFQCVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALS 115 (292)
Q Consensus 49 ~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~ 115 (292)
..|.+|+|+|.... ..+.|++++..+. + .+..+.+.+-. ++.|.|.|.+.+
T Consensus 5 isGTtVtlTCP~~~---~~i~W~~n~~~~~---g---------~~~~~~~~~~~-e~~G~Y~C~~~~ 55 (65)
T cd07692 5 ISGTTVTVTCPLSG---DDIKWKKNDQVSQ---G---------SDEKYLSLNHF-SSSGYYHCTADN 55 (65)
T ss_pred EeccEEEEECCCCC---CCceEEeCCccCC---C---------CCceEEeeccC-CCCceEEEEeCC
Confidence 46889999997642 2399999985431 1 12233444444 889999999853
No 374
>cd05721 IgV_CTLA-4 Immunoglobulin (Ig) domain of cytotoxic T lymphocyte-associated antigen 4 (CTLA-4). IgV_CTLA-4: domain similar to the variable(v)-type immunoglobulin (Ig) domain found in cytotoxic T lymphocyte-associated antigen 4 (CTLA-4). CTLA-4 is involved in the regulation of T cell response, acting as an inhibitor of intracellular signalling. CTLA-4 is similar to CD28, a T cell co-receptor protein that recognizes the B7 proteins (CD80 and CD86). CD28 binding of the B7 proteins occurs after the presentation of antigen to the T cell receptor (TCR) via the peptide-MHC complex on the surface of an antigen presenting cell (APC). CTLA-4 also binds the B7 molecules with a higher affinity than does CD28. The B7/CTLA-4 interaction generates inhibitory signals down-regulating the response, and may prevent T cell activation by weak TCR signals. CD28 and CTLA-4 then elicit opposing signals in the regulation of T cell responsiveness and homeostasis. T cell activation leads to increased
Probab=97.31 E-value=0.0028 Score=40.97 Aligned_cols=71 Identities=10% Similarity=0.129 Sum_probs=44.2
Q ss_pred CCccEEecCCcEEEEEEEeeeC--C-CeeEEEECCeEE-e---e------ccCCCcceeEEee-----ecEEEEccCCCC
Q psy15128 43 PQDQKVGLNGIASFQCVAEGSP--L-PSVFWTQEGSQV-L---M------FPGNAYGHLHVTQ-----EGTLRIQGVQKE 104 (292)
Q Consensus 43 ~~~~~~~~g~~~~l~C~~~~~~--~-~~v~W~~~~~~~-~---~------~~~~~~~~~~~~~-----~~~l~i~~~~~~ 104 (292)
+....+..|+.++|.|.+.+.. . ..+.|+|..... . . .......+..... .-.|.|.+++.+
T Consensus 5 ~~~~lv~p~~sv~LsC~~sg~~~s~e~~~~wvRq~pg~lE~c~~~~~~g~~~~~~~~r~tcs~~~s~ntv~L~l~~L~a~ 84 (115)
T cd05721 5 QSPVLASSNGAASLVCEYTYNGFSKEFRASLLKGADSAVEVCAVTGNMSNQLQTSLDGFNCDGTLGNEQVNFTLQNLRAN 84 (115)
T ss_pred cCCeEEcCCCCEEEEEEecCCccccEEEEEEEEeCCCCcEEEEEEeCCCccccccCCCeEEeEeCCCCEEEEEEcCCCHH
Confidence 3455677889999999997753 2 468898853211 0 0 0001112221111 126999999999
Q ss_pred CCeEEEEEE
Q psy15128 105 DAGFFVCSA 113 (292)
Q Consensus 105 d~g~Y~C~~ 113 (292)
|++.|.|..
T Consensus 85 DTa~Y~Ca~ 93 (115)
T cd05721 85 QTDIYFCKI 93 (115)
T ss_pred HCeEEEEEe
Confidence 999999976
No 375
>smart00406 IGv Immunoglobulin V-Type.
Probab=97.25 E-value=0.0008 Score=41.05 Aligned_cols=20 Identities=15% Similarity=-0.047 Sum_probs=17.6
Q ss_pred cccccccccccccceeEEEE
Q psy15128 262 RSIFGSVLGALSDDQWKLIA 281 (292)
Q Consensus 262 ~~l~i~~~~~~~~g~y~C~a 281 (292)
..|.|..++.+|+|.|.|.+
T Consensus 62 ~~L~i~~~~~~D~G~Y~C~v 81 (81)
T smart00406 62 VSLTISNLRVEDTGTYYCAV 81 (81)
T ss_pred EEEEEcCCCHHHCEEEEEcC
Confidence 46889999999999999963
No 376
>PF08204 V-set_CD47: CD47 immunoglobulin-like domain; InterPro: IPR013270 This family represents the CD47 leukocyte antigen V-set like Ig domain [, ].; PDB: 2VSC_B 2JJS_D 2JJT_C.
Probab=97.21 E-value=0.00055 Score=45.20 Aligned_cols=80 Identities=13% Similarity=0.260 Sum_probs=45.7
Q ss_pred EecCCcEEEEEEEeee-----CCCeeEEEECCeEEeeccCCCccee-----------EEeeecEEEEccCCCCCCeEEEE
Q psy15128 48 VGLNGIASFQCVAEGS-----PLPSVFWTQEGSQVLMFPGNAYGHL-----------HVTQEGTLRIQGVQKEDAGFFVC 111 (292)
Q Consensus 48 ~~~g~~~~l~C~~~~~-----~~~~v~W~~~~~~~~~~~~~~~~~~-----------~~~~~~~l~i~~~~~~d~g~Y~C 111 (292)
..-++++.|.|.+... +...|.|.+++..+....+...... ...++.+|.+.....- .|+|+|
T Consensus 24 t~CN~tV~IPC~v~n~~~~ni~~m~VkWk~~~~~If~~dg~~~~~~~~~f~sa~i~~l~kG~aSL~~~~~~a~-~GnYTC 102 (130)
T PF08204_consen 24 TVCNDTVVIPCFVNNLEANNISEMYVKWKFKNKDIFIFDGTNNKSTSDNFPSAKISELLKGNASLKMDKSDAV-EGNYTC 102 (130)
T ss_dssp -TT-SEEEE--BBSS---SSGGGEEEEEEETTEEEEEEETTTTEEEEGGGTT-BEGGGGGTB--EEEEHHHHH--EEEEE
T ss_pred EecCCCEEEEeEeccccccccceEEEEEEECCeEEEEEcCccceecccCccccchhHhhCCCEEEEEcchhcc-ccceEE
Confidence 3457899999998642 2336899999988765554432221 1122335777765444 899999
Q ss_pred EEEeCCcCeeEEEEEEE
Q psy15128 112 SALSVAGSTTVRAFLQV 128 (292)
Q Consensus 112 ~~~~~~~~~~~~~~l~v 128 (292)
.+..........+.|..
T Consensus 103 eVt~~~~ege~~i~Lk~ 119 (130)
T PF08204_consen 103 EVTELSREGETTIELKY 119 (130)
T ss_dssp EEEETTEEEEEEEEEEE
T ss_pred EEEecCCCceEEEEEEE
Confidence 99876665555555554
No 377
>cd07689 Ig2_VCAM-1 Second immunoglobulin (Ig)-like domain of vascular endothelial cell adhesion molecule-1 (VCAM-1, CD106) and intercellular cell adhesion molecule-1 (ICAM-1, CD54) and similar proteins. Ig2_ VCAM-1_like: domain similar to the second immunoglobulin (Ig)-like domain of vascular endothelial cell adhesion molecule-1 (VCAM-1, CD106). During the inflammation process, these molecules recruit leukocytes onto the vascular endothelium before extravasation to the injured tissues. The interaction of VCAM-1 binding to the beta1 integrin very late antigen (VLA-4) expressed by lymphocytes and monocytes mediates the adhesion of leucocytes to blood vessel walls, and regulates migration across the endothelium. During metastasis, some circulating cancer cells extravasate to a secondary site by a similar process. VCAM-1 may be involved in organ targeted tumor metastasis and may also act as host receptors for viruses and parasites. VCAM-1 contains seven Ig domains.
Probab=97.19 E-value=0.0025 Score=39.88 Aligned_cols=68 Identities=9% Similarity=0.008 Sum_probs=39.0
Q ss_pred EecCCcEEEEEEEee-eCC--CeeEEEECCeEEeeccCCCc--ceeEEeeecEEEEccCCCCCCeEEEEEEEe
Q psy15128 48 VGLNGIASFQCVAEG-SPL--PSVFWTQEGSQVLMFPGNAY--GHLHVTQEGTLRIQGVQKEDAGFFVCSALS 115 (292)
Q Consensus 48 ~~~g~~~~l~C~~~~-~~~--~~v~W~~~~~~~~~~~~~~~--~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~ 115 (292)
+.+|..+++.|.+.+ .|. ..+.|+++...+........ ..........+.+.....+|...|+|+|.-
T Consensus 12 l~~G~~vtv~C~v~~v~P~~~l~v~LlkG~~~l~~~~f~~~~~~ks~~~~~~~vtftptreD~g~~fsC~A~L 84 (99)
T cd07689 12 LEEGKPVTVKCEVPDVYPFDRLEIELLKGETLLPSKSFLEDMDKKSLETKSLEVTFTPTIEDIGKVLVCRAKL 84 (99)
T ss_pred ccCCceEEEEEEecCcccCCceEEEEecCcceecccccccccccCCCCCcceeEEEecchhhCCcEEEEEEEE
Confidence 578999999999976 344 47899987655432111000 000011123566665444444489999863
No 378
>PHA03271 envelope glycoprotein C; Provisional
Probab=96.87 E-value=0.16 Score=40.47 Aligned_cols=82 Identities=18% Similarity=0.276 Sum_probs=50.5
Q ss_pred EEEEccCCCCCCeEEEEEEEeCCcCeeEEEEEEEEeecCCCCCeEEeCCCCceecCCCeEEEEeEeccC-CCC--ceEEE
Q psy15128 95 TLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVTSVEDTPPPIVQVGPSNQTLPLHSVAFLPCQAVGS-PPP--HIRWY 171 (292)
Q Consensus 95 ~l~i~~~~~~d~g~Y~C~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~-p~~--~~~W~ 171 (292)
.|.|.++...++|.|.-..++.....-....+.+... ..+|.+.+.+. .+..|+...-.|.+..+ |+- .+.|+
T Consensus 208 ~v~I~svD~~t~Gy~~v~~~d~~N~~i~e~~~~~~v~--~RPPsVsV~a~--PVL~Ge~YkAtC~vAnYYPP~SvrlrWf 283 (490)
T PHA03271 208 GVEIRNVDYADNGYIQVIMRDPFNRPLLDKHIYIRVC--QRPASVDVLAP--PVLSGENYKASCIVRHFYPPGSVYVSWR 283 (490)
T ss_pred eEEEEEeecccceEEEEEecCCCCCccccceEEEEEE--ecCCCccccCC--ccccCCCceEEEEeeeecCCCceEEEEE
Confidence 5889999999999664444433222222222222211 23444544333 36789999999999666 432 59999
Q ss_pred eCCeeCCCC
Q psy15128 172 KNGNSLPPE 180 (292)
Q Consensus 172 ~~~~~l~~~ 180 (292)
.||.+....
T Consensus 284 ~nG~~V~~~ 292 (490)
T PHA03271 284 QNGNIATPR 292 (490)
T ss_pred eCCccccCc
Confidence 999887553
No 379
>cd07691 Ig_CD3_gamma_delta Immunoglobulin (Ig)-like domain of CD3 gamma and delta chains. Ig_CD3_gamma_delta; immunoglobulin (Ig)-like domain of CD3 gamma and delta chains. CD3 is a T cell surface receptor that is associated with alpha/beta T cell receptors (TCRs). The CD3 complex consists of one gamma, one delta, two epsilon, and two zeta chains. The CD3 subunits form heterodimers as gamma/epsilon, delta/epsilon, and zeta/zeta. The gamma, delta, and epsilon chains each contain an extracellular Ig domain, whereas the extracellular domains of the zeta chains are very small and have unknown structure. The CD3 domain participates in intracellular signalling once the TCR has bound an MHC/antigen complex.
Probab=96.81 E-value=0.0031 Score=36.26 Aligned_cols=50 Identities=18% Similarity=0.177 Sum_probs=33.1
Q ss_pred CCCceEEEeeCCCCCCCCeEEEeEcCeEeccCCCceEEecCCCccccccccccccccccccccceeEEEEee
Q psy15128 212 SGETALLECGPPKGQPEPTLHWKKNGQFIDLESSKRVSILGDPWFDSRRSRSIFGSVLGALSDDQWKLIAKN 283 (292)
Q Consensus 212 ~g~~~~l~C~~~~~~p~~~~~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~a~n 283 (292)
..++|.|+|.+ . ..|.|++ |..+...+.. .+.+-.....-.|.|.|.++|
T Consensus 5 ~~~~V~L~C~~-~----tsi~W~k-G~~~~~~~~~----------------tlnLGs~~~DPRG~Y~C~~s~ 54 (69)
T cd07691 5 SEGKVFLKCNG-A----TNITWKK-GKEILEVSNT----------------LLDLGSRINDPRGTYSCKESE 54 (69)
T ss_pred cCceEEEEecC-C----CcEEEec-Cccccccccc----------------EEeccCcccCCCcceEecCcc
Confidence 34579999975 2 4699999 5555321111 344445556679999999987
No 380
>PHA02982 hypothetical protein; Provisional
Probab=96.81 E-value=0.077 Score=38.00 Aligned_cols=123 Identities=15% Similarity=0.287 Sum_probs=70.4
Q ss_pred CccEEecCCcEEEEEEEee-eCCCeeEEEECCeEEeec--------------cCCCcceeEE---eeecEEEEccCCCCC
Q psy15128 44 QDQKVGLNGIASFQCVAEG-SPLPSVFWTQEGSQVLMF--------------PGNAYGHLHV---TQEGTLRIQGVQKED 105 (292)
Q Consensus 44 ~~~~~~~g~~~~l~C~~~~-~~~~~v~W~~~~~~~~~~--------------~~~~~~~~~~---~~~~~l~i~~~~~~d 105 (292)
..+....++.+.|.|.... ..-.+..|+++....... ++........ ...++|+|.++..+.
T Consensus 32 ~dv~a~vd~~V~L~C~~~~~~~i~~~~W~~~~~~~la~~~~~~~~iN~~~y~~~~~kd~y~~sv~g~~STLTIkk~~i~N 111 (251)
T PHA02982 32 ADVNATVDQEVKLQCLFKDADEISRAMWKGDAGFMLAQEANGGTGINAFNYVPGPYKDKYALSVSGNSSTFTMKKPDPQN 111 (251)
T ss_pred hhhhccCCCcEEEEecCCCcchhhhheeeCCCCeEEEeeecCcceeccccccCCccceeEEEEEeccceeEEeccCCccc
Confidence 4455667999999998643 234478898865332210 0111111111 123589999999999
Q ss_pred CeEEEEEEEeCCcCee-EEEEEEEEeecCCCCCeEEeCCCCceecCCCeEEEEeEeccCCCCceEEEeCCee
Q psy15128 106 AGFFVCSALSVAGSTT-VRAFLQVTSVEDTPPPIVQVGPSNQTLPLHSVAFLPCQAVGSPPPHIRWYKNGNS 176 (292)
Q Consensus 106 ~g~Y~C~~~~~~~~~~-~~~~l~v~~~~~~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~p~~~~~W~~~~~~ 176 (292)
.|.|+|.+....+... ....+.|+.. ...+.. ..-...-.+.|-+.....+-..|..+|..
T Consensus 112 ~GCYtc~~ks~~~k~E~c~kCl~V~~~----~V~~~W------~e~nNeT~V~CyVgS~~~dvp~W~V~GVv 173 (251)
T PHA02982 112 LGCFTCEAKDAEGKEETCEKCLEIQKE----DILYVV------EEHNNETIITCFVGSKHGDVPRFIVAGIV 173 (251)
T ss_pred CCceEEEEecCCCchheeheeeeEecc----eEEEEE------EecCCeEEEEEEEEeccCCCccEEEeeEE
Confidence 9999999987554433 3455555210 111111 11223356889885553333389887764
No 381
>KOG4597|consensus
Probab=96.75 E-value=0.0031 Score=50.54 Aligned_cols=87 Identities=26% Similarity=0.253 Sum_probs=65.8
Q ss_pred CCCccEEecCCcEEEEEEEeeeCCCeeEEEE---CCeEEeeccCCCcceeEEeeecEEEEccCCCCCCeEEEEEEEeCCc
Q psy15128 42 RPQDQKVGLNGIASFQCVAEGSPLPSVFWTQ---EGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAG 118 (292)
Q Consensus 42 ~~~~~~~~~g~~~~l~C~~~~~~~~~v~W~~---~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~~ 118 (292)
-+....+..+++..++|-+.|.+.+.|+|.+ +...+...+.....+........|.|-+....|+|.|+|.+.+..|
T Consensus 202 cpa~w~vg~wetcS~tCg~~G~q~r~V~c~qv~anr~~vv~~~nq~~e~p~vtstcql~ic~ewq~~a~w~tCs~rcg~g 281 (560)
T KOG4597|consen 202 CPAEWFVGDWETCSSTCGVQGRQYRVVTCEQVFANRENVVMRPNQTVENPVVTSTCQLVICNEWQADAGWYTCSARCGAG 281 (560)
T ss_pred CcchhhcccchhhcccccccCCcCceeeeehhhccccceeecCccccCCcceeeeeeEEEcchhhcCCCceeeccccccc
Confidence 3445567788999999999999999999976 3344433344445555566667899999999999999999999888
Q ss_pred CeeEEEEEEE
Q psy15128 119 STTVRAFLQV 128 (292)
Q Consensus 119 ~~~~~~~l~v 128 (292)
.....+.+.+
T Consensus 282 ~~~rdv~c~s 291 (560)
T KOG4597|consen 282 FLRRDVPCSS 291 (560)
T ss_pred eeeccceeee
Confidence 7766665544
No 382
>PF08204 V-set_CD47: CD47 immunoglobulin-like domain; InterPro: IPR013270 This family represents the CD47 leukocyte antigen V-set like Ig domain [, ].; PDB: 2VSC_B 2JJS_D 2JJT_C.
Probab=96.73 E-value=0.0046 Score=40.95 Aligned_cols=77 Identities=12% Similarity=0.128 Sum_probs=37.4
Q ss_pred EEeCCCceEEEeeCCCC-----CCCCeEEEeEcCeEeccCCCceEEecCCCcc------cccccccccccccccccccee
Q psy15128 209 RVASGETALLECGPPKG-----QPEPTLHWKKNGQFIDLESSKRVSILGDPWF------DSRRSRSIFGSVLGALSDDQW 277 (292)
Q Consensus 209 ~~~~g~~~~l~C~~~~~-----~p~~~~~W~~~g~~~~~~~~~~~~~~~~~~~------~~~~~~~l~i~~~~~~~~g~y 277 (292)
...-++.|.|.|.+ .. .+.-.+.|.++|+.+..-++..-......+. ..+...+|.+...... .|+|
T Consensus 23 ~t~CN~tV~IPC~v-~n~~~~ni~~m~VkWk~~~~~If~~dg~~~~~~~~~f~sa~i~~l~kG~aSL~~~~~~a~-~GnY 100 (130)
T PF08204_consen 23 YTVCNDTVVIPCFV-NNLEANNISEMYVKWKFKNKDIFIFDGTNNKSTSDNFPSAKISELLKGNASLKMDKSDAV-EGNY 100 (130)
T ss_dssp E-TT-SEEEE--BB-SS---SSGGGEEEEEEETTEEEEEEETTTTEEEEGGGTT-BEGGGGGTB--EEEEHHHHH--EEE
T ss_pred EEecCCCEEEEeEe-ccccccccceEEEEEEECCeEEEEEcCccceecccCccccchhHhhCCCEEEEEcchhcc-ccce
Confidence 34568999999998 43 1233699999998874322221111011110 0111223444433333 8999
Q ss_pred EEEEeecccc
Q psy15128 278 KLIAKNIRNQ 287 (292)
Q Consensus 278 ~C~a~n~~g~ 287 (292)
+|.|.+.-.+
T Consensus 101 TCeVt~~~~e 110 (130)
T PF08204_consen 101 TCEVTELSRE 110 (130)
T ss_dssp EEEEEETTEE
T ss_pred EEEEEecCCC
Confidence 9999866544
No 383
>KOG0613|consensus
Probab=96.37 E-value=0.02 Score=51.89 Aligned_cols=203 Identities=14% Similarity=0.032 Sum_probs=111.9
Q ss_pred cccCCcCCCeeEEEEEEecccccccccEEEEEe----------------CCCcEE---eCCCccEEecCCcEEEEEEEee
Q psy15128 2 ITEVKKSDEGKYQCYVQNMVGERETKPALLTVH----------------APPSFV---VRPQDQKVGLNGIASFQCVAEG 62 (292)
Q Consensus 2 i~~v~~~D~G~Y~C~~~~~~~~~~~~~~~l~v~----------------~~p~~~---~~~~~~~~~~g~~~~l~C~~~~ 62 (292)
|.+-..++.+.|+|...+..+..... +.-.+. .++... .....+....+..+++.|...+
T Consensus 282 i~~~~~~~~~s~t~~~~~~~~q~~~~-v~~~~~i~~~~~~p~~~~~aaa~~~~~~v~~~~~~~v~a~d~~~v~m~~~~~~ 360 (1205)
T KOG0613|consen 282 IQNDGPEPELSWTVADKRQGCQDRFK-VTEEAPIGKGKPGPESLQAAAARPPEVPVGLVRNLSVTARDNTLVEMPTALSG 360 (1205)
T ss_pred ccccCCccccceeeecccCCccccee-eeEEeeccccccCchhhhhhccCCccccccccccceeccccCcceeecccccC
Confidence 34555677788888887776655444 332221 111111 1112233444667889998888
Q ss_pred eCCCe-eEEEECCeEEeeccCCCcceeEEeeecEEEEccCCCCCCeEEEEEEEeCCcCeeEEEEEEEEeecCCCCCeEEe
Q psy15128 63 SPLPS-VFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVTSVEDTPPPIVQV 141 (292)
Q Consensus 63 ~~~~~-v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~ 141 (292)
...+. +.|+.+........+...-.........+.|..+...+.+.|.|.+.|..+.........+........+....
T Consensus 361 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ts~~~~~~~~~~~e~~~~~~~a~n~~g~~~~~~~~~vs~~~~gt~~~~~k 440 (1205)
T KOG0613|consen 361 TQKPDEAQGYHGEEVSSESLGALPCPVGTVTSHTYTIKDAGPGEGYFTRVPAVNKGGTEQTIAESTVSEEMPGTQPPKFK 440 (1205)
T ss_pred CcCCchheeecccccccccccccccccccccCcchhhhhcCcccccccccceeccCCcccccchhhcccccCCCCCcccc
Confidence 76664 99998765433222222222222334578888999999999999999988775544333333222112222222
Q ss_pred CCCCceecCC--CeEEEEeEeccCCC--CceEEEeCCeeCCCCCccEEEcCCCcEEEEeeecCCCCCC
Q psy15128 142 GPSNQTLPLH--SVAFLPCQAVGSPP--PHIRWYKNGNSLPPEDTRINVSSSGSLQIDVLRDDFRAEP 205 (292)
Q Consensus 142 ~~~~~~~~~g--~~v~l~C~~~~~p~--~~~~W~~~~~~l~~~~~~~~~~~~~~l~i~~~~~~d~g~~ 205 (292)
........++ +.+.+.|...+.+. ..++|++++.+............-.+|.+......+.|.+
T Consensus 441 k~~~~t~~L~~~~~i~~~~~~~s~~~~~~~~tt~~~~~~~s~~s~~l~r~~~tslLlk~~~~~~~A~~ 508 (1205)
T KOG0613|consen 441 KDVSTTDLLTVKDEITVRTPDSSTSMPMTTVTTIKDGLPLSDRSVTLTRDVLTSLLLKVASLSDGAQY 508 (1205)
T ss_pred ccccccccccCCcccccccCCCCccccceeEeeccCCcccccccccccccchhhheeeccCCCccchh
Confidence 2222233333 78889998877763 3466777765554322222222223566666666677644
No 384
>PF07354 Sp38: Zona-pellucida-binding protein (Sp38); InterPro: IPR010857 This family contains a number of zona-pellucida-binding proteins that seem to be restricted to mammals. These are sperm proteins that bind to the 90 kDa family of zona pellucida glycoproteins in a calcium-dependent manner []. These represent some of the specific molecules that mediate the first steps of gamete interaction, allowing fertilisation to occur [].; GO: 0007339 binding of sperm to zona pellucida, 0005576 extracellular region
Probab=96.14 E-value=0.011 Score=43.84 Aligned_cols=50 Identities=20% Similarity=0.408 Sum_probs=39.0
Q ss_pred CCCeeEEEECCeEEeeccCCCcceeEEeeecEEEEccCCCCCCeEEEEEEEeCC
Q psy15128 64 PLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVA 117 (292)
Q Consensus 64 ~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~ 117 (292)
..|.+.|...++... .......+...+.|.+.+...+++|.|+|......
T Consensus 11 iDP~y~W~GP~g~~l----~gn~~~nIT~TG~L~~~~F~esmSG~YTCtLsYk~ 60 (271)
T PF07354_consen 11 IDPTYLWTGPNGKPL----SGNSYVNITETGKLMFKNFQESMSGSYTCTLSYKP 60 (271)
T ss_pred CCCceEEECCCCccc----CCCCeEEEccCceEEeeccccccCCceEEEEEEEe
Confidence 356899998766543 23445667788899999999999999999987654
No 385
>PHA03042 CD47-like protein; Provisional
Probab=96.05 E-value=0.086 Score=39.48 Aligned_cols=71 Identities=13% Similarity=0.150 Sum_probs=45.8
Q ss_pred EecCCcEEEEEEEeee-----CCCeeEEEECCeEEeeccCCCcceeEEeeecEEEEccCCCCCCeEEEEEEEeCCcCeeE
Q psy15128 48 VGLNGIASFQCVAEGS-----PLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTTV 122 (292)
Q Consensus 48 ~~~g~~~~l~C~~~~~-----~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~~~~~~ 122 (292)
..-++++.+.|.+... ....+.|..++..+....+.+ .++|++.... .-.|+|+|.+.+.......
T Consensus 28 T~CN~TV~IpC~v~n~~~~ni~~~~V~Wkf~~~~If~~n~tn--------~aSL~~~f~~-~l~GNYTCEv~~l~n~gk~ 98 (286)
T PHA03042 28 TTCNKTIVIVCNLNLLIYYNISNIHINWKFNNKVIFKKNNTN--------TSSLKFNFSK-NLSGNYTCEAINKFNKIKN 98 (286)
T ss_pred EecCceEEEEeecCChhhcCccceEEEEEeCCeeEEEecCCc--------ceEEEEeccc-cCCCceeEEEeecccCccE
Confidence 3457899999988652 244699999998876444331 1355555433 3479999999876554444
Q ss_pred EEEEE
Q psy15128 123 RAFLQ 127 (292)
Q Consensus 123 ~~~l~ 127 (292)
...+.
T Consensus 99 ~IeLk 103 (286)
T PHA03042 99 TIELQ 103 (286)
T ss_pred EEEEE
Confidence 44443
No 386
>PHA02914 Immunoglobulin-like domain protein; Provisional
Probab=95.52 E-value=0.42 Score=38.05 Aligned_cols=122 Identities=16% Similarity=0.199 Sum_probs=71.1
Q ss_pred cEEecCCcEEEEEEEee---eCCCeeEEEECCeEEe------------eccCCCcceeEEe---------eecEEEEccC
Q psy15128 46 QKVGLNGIASFQCVAEG---SPLPSVFWTQEGSQVL------------MFPGNAYGHLHVT---------QEGTLRIQGV 101 (292)
Q Consensus 46 ~~~~~g~~~~l~C~~~~---~~~~~v~W~~~~~~~~------------~~~~~~~~~~~~~---------~~~~l~i~~~ 101 (292)
..+..|..+.|.|.+.- .......|+-.+-++- .........+... ..++|+|.++
T Consensus 274 ~~~~~g~~v~~~c~~s~~~~e~i~~~~w~~t~~~~~~~~g~~~~~~~v~~~~~~~~~~~i~~~~~~s~dlk~STLTIkka 353 (500)
T PHA02914 274 VMLEVGKRVDIECFFSMCGNENISNAKWIDTGFEIGPLIGTVKSKDIVEGDFAEDDDFMISAHANYSDDLKNSTLTIKKA 353 (500)
T ss_pred eEeccCcEEEEEEEEeecCCcccccceEEecCCcccceeEEEEecceeecccccCCceEEEEecccccchhhceEEeeeE
Confidence 45667999999998864 2344688976442210 0011111111111 1347999999
Q ss_pred CCCCCeEEEEEEEeCCcCeeEEEEEEEEeecCCCCCeEEeCCCCceecCCC-eEEEEeEeccC--CCCceEEEeCCeeCC
Q psy15128 102 QKEDAGFFVCSALSVAGSTTVRAFLQVTSVEDTPPPIVQVGPSNQTLPLHS-VAFLPCQAVGS--PPPHIRWYKNGNSLP 178 (292)
Q Consensus 102 ~~~d~g~Y~C~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~g~-~v~l~C~~~~~--p~~~~~W~~~~~~l~ 178 (292)
..+.+|-|+|++....-......-|.|.. ...+. ...+|. .-.+.|-+..+ .++.+.|..+|....
T Consensus 354 ~I~N~GCY~~~a~~g~~~~ec~~Cl~V~d-----~V~f~------W~~e~~n~T~V~Cyv~sy~~kp~si~wkvnGV~~~ 422 (500)
T PHA02914 354 HINNAGCYEAQAFMGKFKEECRHCFKVAD-----HVFFK------WNTEGDNETKVACYAAQYDMQPFSILWKSNGVSFG 422 (500)
T ss_pred EEEcCCceEEEEecCcchhhhhhheEecc-----EEEEE------EEeccCceEEEEEEEEecccCCceeEEEEccEEec
Confidence 99999999999986544444444555432 11111 122433 34678887444 455699998887654
No 387
>PHA03042 CD47-like protein; Provisional
Probab=95.49 E-value=0.049 Score=40.72 Aligned_cols=61 Identities=16% Similarity=0.161 Sum_probs=38.9
Q ss_pred eCCCceEEEeeCCCCC-----CCCeEEEeEcCeEeccCCCceEEecCCCccccccccccccccccccccceeEEEEeecc
Q psy15128 211 ASGETALLECGPPKGQ-----PEPTLHWKKNGQFIDLESSKRVSILGDPWFDSRRSRSIFGSVLGALSDDQWKLIAKNIR 285 (292)
Q Consensus 211 ~~g~~~~l~C~~~~~~-----p~~~~~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~a~n~~ 285 (292)
.-++++.+.|.+ ... ....+.|.++|+.+...++.+. .+|.. ..+..-.|+|+|.|.+..
T Consensus 29 ~CN~TV~IpC~v-~n~~~~ni~~~~V~Wkf~~~~If~~n~tn~-------------aSL~~-~f~~~l~GNYTCEv~~l~ 93 (286)
T PHA03042 29 TCNKTIVIVCNL-NLLIYYNISNIHINWKFNNKVIFKKNNTNT-------------SSLKF-NFSKNLSGNYTCEAINKF 93 (286)
T ss_pred ecCceEEEEeec-CChhhcCccceEEEEEeCCeeEEEecCCcc-------------eEEEE-eccccCCCceeEEEeecc
Confidence 467899999997 432 2446999999988853332211 01111 233445899999999765
Q ss_pred c
Q psy15128 286 N 286 (292)
Q Consensus 286 g 286 (292)
-
T Consensus 94 n 94 (286)
T PHA03042 94 N 94 (286)
T ss_pred c
Confidence 4
No 388
>PHA02982 hypothetical protein; Provisional
Probab=95.47 E-value=0.045 Score=39.12 Aligned_cols=84 Identities=15% Similarity=0.221 Sum_probs=51.6
Q ss_pred cceEEeCCCceEEEeeCCCCCCCCeEEEeEc-CeEeccCCCceEEecC-----CCc---c---ccccccccccccccccc
Q psy15128 206 KDTRVASGETALLECGPPKGQPEPTLHWKKN-GQFIDLESSKRVSILG-----DPW---F---DSRRSRSIFGSVLGALS 273 (292)
Q Consensus 206 ~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~-g~~~~~~~~~~~~~~~-----~~~---~---~~~~~~~l~i~~~~~~~ 273 (292)
.+.....+++|.|+|....+.--....|+.+ |..+.........+.. +.+ + .....++|+|..+.+..
T Consensus 32 ~dv~a~vd~~V~L~C~~~~~~~i~~~~W~~~~~~~la~~~~~~~~iN~~~y~~~~~kd~y~~sv~g~~STLTIkk~~i~N 111 (251)
T PHA02982 32 ADVNATVDQEVKLQCLFKDADEISRAMWKGDAGFMLAQEANGGTGINAFNYVPGPYKDKYALSVSGNSSTFTMKKPDPQN 111 (251)
T ss_pred hhhhccCCCcEEEEecCCCcchhhhheeeCCCCeEEEeeecCcceeccccccCCccceeEEEEEeccceeEEeccCCccc
Confidence 3556778999999998644444457889874 3333211111111100 000 0 11334579999999999
Q ss_pred cceeEEEEeecccccc
Q psy15128 274 DDQWKLIAKNIRNQQQ 289 (292)
Q Consensus 274 ~g~y~C~a~n~~g~~~ 289 (292)
.|=|+|.|....|...
T Consensus 112 ~GCYtc~~ks~~~k~E 127 (251)
T PHA02982 112 LGCFTCEAKDAEGKEE 127 (251)
T ss_pred CCceEEEEecCCCchh
Confidence 9999999998766543
No 389
>cd05721 IgV_CTLA-4 Immunoglobulin (Ig) domain of cytotoxic T lymphocyte-associated antigen 4 (CTLA-4). IgV_CTLA-4: domain similar to the variable(v)-type immunoglobulin (Ig) domain found in cytotoxic T lymphocyte-associated antigen 4 (CTLA-4). CTLA-4 is involved in the regulation of T cell response, acting as an inhibitor of intracellular signalling. CTLA-4 is similar to CD28, a T cell co-receptor protein that recognizes the B7 proteins (CD80 and CD86). CD28 binding of the B7 proteins occurs after the presentation of antigen to the T cell receptor (TCR) via the peptide-MHC complex on the surface of an antigen presenting cell (APC). CTLA-4 also binds the B7 molecules with a higher affinity than does CD28. The B7/CTLA-4 interaction generates inhibitory signals down-regulating the response, and may prevent T cell activation by weak TCR signals. CD28 and CTLA-4 then elicit opposing signals in the regulation of T cell responsiveness and homeostasis. T cell activation leads to increased
Probab=95.46 E-value=0.094 Score=34.09 Aligned_cols=74 Identities=14% Similarity=-0.034 Sum_probs=43.4
Q ss_pred ceEEeCCCceEEEeeCCCCCCC---CeEEEeEc--CeEec-----cCCCceEEecCCCc----ccccccccccccccccc
Q psy15128 207 DTRVASGETALLECGPPKGQPE---PTLHWKKN--GQFID-----LESSKRVSILGDPW----FDSRRSRSIFGSVLGAL 272 (292)
Q Consensus 207 ~~~~~~g~~~~l~C~~~~~~p~---~~~~W~~~--g~~~~-----~~~~~~~~~~~~~~----~~~~~~~~l~i~~~~~~ 272 (292)
...+..|..++|+|.+ .++.. -.+.|.|. | .++ ...+.........+ ........|.+..++.+
T Consensus 7 ~~lv~p~~sv~LsC~~-sg~~~s~e~~~~wvRq~pg-~lE~c~~~~~~g~~~~~~~~r~tcs~~~s~ntv~L~l~~L~a~ 84 (115)
T cd05721 7 PVLASSNGAASLVCEY-TYNGFSKEFRASLLKGADS-AVEVCAVTGNMSNQLQTSLDGFNCDGTLGNEQVNFTLQNLRAN 84 (115)
T ss_pred CeEEcCCCCEEEEEEe-cCCccccEEEEEEEEeCCC-CcEEEEEEeCCCccccccCCCeEEeEeCCCCEEEEEEcCCCHH
Confidence 4567889999999997 55332 36889883 3 211 01111110011100 11133347889999999
Q ss_pred ccceeEEEEe
Q psy15128 273 SDDQWKLIAK 282 (292)
Q Consensus 273 ~~g~y~C~a~ 282 (292)
|.+.|.|.-+
T Consensus 85 DTa~Y~Ca~e 94 (115)
T cd05721 85 QTDIYFCKIE 94 (115)
T ss_pred HCeEEEEEee
Confidence 9999999653
No 390
>KOG1480|consensus
Probab=95.28 E-value=0.018 Score=49.34 Aligned_cols=165 Identities=21% Similarity=0.308 Sum_probs=94.3
Q ss_pred CCcEEeCCCccEEecCCcEEEEEEEeeeCC----CeeEEEECCeEEeeccCCCcceeEEeeecEEEEccCCCCCC---eE
Q psy15128 36 PPSFVVRPQDQKVGLNGIASFQCVAEGSPL----PSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDA---GF 108 (292)
Q Consensus 36 ~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~----~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~---g~ 108 (292)
.|.+...+....+..+..+.|.|.+...+. +.-.|................... -....+.|.....++. ..
T Consensus 24 l~~~~~~p~~~yii~~~p~~l~c~a~~a~~i~~kc~~~wv~~~~~~~~~~~d~tsg~~-~~~~si~Isr~~v~~~~~~~d 102 (909)
T KOG1480|consen 24 LPHFTTEPKSAYIIKNKPLRLQCKANPATQIRFKCNSEWVHQSRHEKLEGTDETSGLG-VREVSIDISRQQVETSGGPED 102 (909)
T ss_pred cceeeecCCccceecCCCccceecCCcccccccccChhhhcCccceeeeccCccccee-EEeeeeeeehhhhhcccCccc
Confidence 356777788888899999999998864332 233466554433222211111111 1112333333333332 34
Q ss_pred EEEE--EEeCCcCeeEE-EEEEEEeecCCCCCeEEeCCCCceecCCCeEEEEeEe-ccCCCCceEEEeCCeeCCCCCccE
Q psy15128 109 FVCS--ALSVAGSTTVR-AFLQVTSVEDTPPPIVQVGPSNQTLPLHSVAFLPCQA-VGSPPPHIRWYKNGNSLPPEDTRI 184 (292)
Q Consensus 109 Y~C~--~~~~~~~~~~~-~~l~v~~~~~~~~~~~~~~~~~~~~~~g~~v~l~C~~-~~~p~~~~~W~~~~~~l~~~~~~~ 184 (292)
|.|+ +....|..... ..+.+. +-...+...+....+..+..+.+.|.. .+.|...+.|++++..+.+ +...
T Consensus 103 ~~cQc~a~~~~g~~~s~~a~vr~a----y~rk~f~~~p~~q~V~~~s~~~l~cr~pe~~paae~~w~k~e~~~~p-d~n~ 177 (909)
T KOG1480|consen 103 YWCQCVAWSDDGTVKSRKATVRIA----YLRKHFEQSPVGQEVQEETTLQLPCRPPEGDPKAEVEWLKNEVVIDP-DANV 177 (909)
T ss_pred eeeeeeeecCCCcchhhhHHHHHH----HHHHhhccChhhheecccccccccccCcccchhhhhhccccCCCCCc-cccc
Confidence 7665 44443311111 001000 001223334555667788889999987 5667778999999988877 4555
Q ss_pred EEcCCCcEEEEeeecCCCCCCc
Q psy15128 185 NVSSSGSLQIDVLRDDFRAEPK 206 (292)
Q Consensus 185 ~~~~~~~l~i~~~~~~d~g~~~ 206 (292)
....+..+.+..+...|.|.|.
T Consensus 178 ~~~~d~~li~~~arlsd~~nyt 199 (909)
T KOG1480|consen 178 IRASDHNLIISQARLSDSGNYT 199 (909)
T ss_pred hhhhcCCccccchhhhhcccce
Confidence 6667778999999999998653
No 391
>PHA03052 Hypothetical protein; Provisional
Probab=95.20 E-value=0.1 Score=29.77 Aligned_cols=36 Identities=17% Similarity=0.482 Sum_probs=29.7
Q ss_pred cceEEeCCCceEEEeeCCCCCC--CCeEEEeEcCeEec
Q psy15128 206 KDTRVASGETALLECGPPKGQP--EPTLHWKKNGQFID 241 (292)
Q Consensus 206 ~~~~~~~g~~~~l~C~~~~~~p--~~~~~W~~~g~~~~ 241 (292)
....+..|..++|.|.|..+.| .+.+.|.-|+..+.
T Consensus 5 ~~i~~slGs~ltI~Ckv~lg~g~~~a~V~W~~N~~~~e 42 (69)
T PHA03052 5 EGIVTSLGSNLTITCKVSLRPPTTDADVFWISNGMYYE 42 (69)
T ss_pred ccEEEEccCCceEeEEEEecCCCcceEEEEEeCCcEEe
Confidence 4567889999999999977655 45899999999884
No 392
>PF11465 Receptor_2B4: Natural killer cell receptor 2B4; InterPro: IPR024303 2B4 is a transmembrane receptor which is expressed primarily on natural killer (NK) cells. It plays a role in activating NK-mediated cytotoxicity through its interaction with CD48 on target cells in a subset of CD8 T cells []. The structure of 2B4 consists of an immunoglobulin variable domain fold and contains two beta-sheets. One of the beta-sheets, the six-stranded sheet, contains structural features that may have a role in ligand recognition and receptor function []. This entry represents the 2B4 immunoglobulin domain.; GO: 0005488 binding; PDB: 2PTU_D 2PTT_B 1Z2K_A.
Probab=94.59 E-value=0.61 Score=29.73 Aligned_cols=36 Identities=22% Similarity=0.358 Sum_probs=26.7
Q ss_pred ecEEEEccCCCCCCeEEEEEEEeCCcCeeEEEEEEEE
Q psy15128 93 EGTLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVT 129 (292)
Q Consensus 93 ~~~l~i~~~~~~d~g~Y~C~~~~~~~~~~~~~~l~v~ 129 (292)
+-.|.|..+++.|+|.|.-++.+..|.. ....+.|.
T Consensus 70 nlaLlIkaAq~qDSG~Y~LEvT~~sG~V-~~~~FqVs 105 (108)
T PF11465_consen 70 NLALLIKAAQPQDSGLYCLEVTNESGKV-CTKNFQVS 105 (108)
T ss_dssp TTEEEESS-SGGG-EEEEEEEEETTSCE-EEEEEEEE
T ss_pred CceEEEeecCcccCceEEEEEEcCCCcE-EEEEEEEE
Confidence 4589999999999999999999987775 34444443
No 393
>PF07354 Sp38: Zona-pellucida-binding protein (Sp38); InterPro: IPR010857 This family contains a number of zona-pellucida-binding proteins that seem to be restricted to mammals. These are sperm proteins that bind to the 90 kDa family of zona pellucida glycoproteins in a calcium-dependent manner []. These represent some of the specific molecules that mediate the first steps of gamete interaction, allowing fertilisation to occur [].; GO: 0007339 binding of sperm to zona pellucida, 0005576 extracellular region
Probab=94.55 E-value=0.057 Score=40.26 Aligned_cols=49 Identities=12% Similarity=0.169 Sum_probs=35.5
Q ss_pred CCCeEEEeEc-CeEeccCCCceEEecCCCccccccccccccccccccccceeEEEEeecc
Q psy15128 227 PEPTLHWKKN-GQFIDLESSKRVSILGDPWFDSRRSRSIFGSVLGALSDDQWKLIAKNIR 285 (292)
Q Consensus 227 p~~~~~W~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~a~n~~ 285 (292)
..|.+.|... |+.+. ...++.+.+.| .|.+..+...++|.|+|..+-..
T Consensus 11 iDP~y~W~GP~g~~l~--gn~~~nIT~TG--------~L~~~~F~esmSG~YTCtLsYk~ 60 (271)
T PF07354_consen 11 IDPTYLWTGPNGKPLS--GNSYVNITETG--------KLMFKNFQESMSGSYTCTLSYKP 60 (271)
T ss_pred CCCceEEECCCCcccC--CCCeEEEccCc--------eEEeeccccccCCceEEEEEEEe
Confidence 3578999885 55553 34455554443 58899999999999999987554
No 394
>PHA02914 Immunoglobulin-like domain protein; Provisional
Probab=94.45 E-value=2.1 Score=34.38 Aligned_cols=79 Identities=13% Similarity=0.134 Sum_probs=48.6
Q ss_pred cceEEeCCCceEEEeeCCC-C-CCCCeEEEeEcCeEec---------------cCCCceEEecCCCcc-ccccccccccc
Q psy15128 206 KDTRVASGETALLECGPPK-G-QPEPTLHWKKNGQFID---------------LESSKRVSILGDPWF-DSRRSRSIFGS 267 (292)
Q Consensus 206 ~~~~~~~g~~~~l~C~~~~-~-~p~~~~~W~~~g~~~~---------------~~~~~~~~~~~~~~~-~~~~~~~l~i~ 267 (292)
....+..|..|.|.|..+. | ..-....|.--|.++- ......+.+.....+ .--..++|+|.
T Consensus 272 ~~~~~~~g~~v~~~c~~s~~~~e~i~~~~w~~t~~~~~~~~g~~~~~~~v~~~~~~~~~~~i~~~~~~s~dlk~STLTIk 351 (500)
T PHA02914 272 DEVMLEVGKRVDIECFFSMCGNENISNAKWIDTGFEIGPLIGTVKSKDIVEGDFAEDDDFMISAHANYSDDLKNSTLTIK 351 (500)
T ss_pred ceeEeccCcEEEEEEEEeecCCcccccceEEecCCcccceeEEEEecceeecccccCCceEEEEecccccchhhceEEee
Confidence 3445667999999998522 1 2334788987665442 112222222222111 11234579999
Q ss_pred cccccccceeEEEEeec
Q psy15128 268 VLGALSDDQWKLIAKNI 284 (292)
Q Consensus 268 ~~~~~~~g~y~C~a~n~ 284 (292)
.+.....|=|.|.|...
T Consensus 352 ka~I~N~GCY~~~a~~g 368 (500)
T PHA02914 352 KAHINNAGCYEAQAFMG 368 (500)
T ss_pred eEEEEcCCceEEEEecC
Confidence 99999999999999854
No 395
>cd05890 Ig2_Nectin-1_like Second immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111) and similar proteins. Ig2_Nectin-1_like: domain similar to the second immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111). Nectin-1 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectins also heterophilically trans-interact with other CAMs such as nectin-like molecules (necls); nectin-1 for example, has been shown to trans-interact with necl-1. Nectins also interact with various other proteins, including the actin filament (F-actin)-binding protein, afadin. Mutation in the human nectin-1 gene is associ
Probab=94.21 E-value=0.25 Score=30.69 Aligned_cols=63 Identities=19% Similarity=0.186 Sum_probs=38.1
Q ss_pred EEEEEE-EeeeCCCeeEEEECCeEEeeccCCCcceeEEeeecEEEEccCCCCCCeEEEEEEEeC
Q psy15128 54 ASFQCV-AEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSV 116 (292)
Q Consensus 54 ~~l~C~-~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~ 116 (292)
+.-.|. +.|.|++.|.|.-+=......+............+.+.+.+....|....+|.+.+.
T Consensus 23 ~VA~CiSa~GrPpa~ItW~t~l~G~~etq~~~~~~GT~TV~S~y~lVPs~~~~gk~lTCvV~h~ 86 (98)
T cd05890 23 LVATCVSANGKPPSVVRWDTRLKGEAEFQEIRNQNGTVTVISRYRLVPSREAHKQKLTCIVNYR 86 (98)
T ss_pred EEEEEEcCCCcCCcEeEEEccCCCceeeeeeCCCCCCEEEEEEEEEeECHHHcCCEeEEEEEec
Confidence 456797 567899999997532111111111112222333456777777778888899999875
No 396
>KOG4597|consensus
Probab=94.20 E-value=0.055 Score=43.77 Aligned_cols=78 Identities=10% Similarity=0.009 Sum_probs=56.0
Q ss_pred cceEEeCCCceEEEeeCCCCCCCCeEEEeEcCeEeccCCCceEEecCCCccc---cccccccccccccccccceeEEEEe
Q psy15128 206 KDTRVASGETALLECGPPKGQPEPTLHWKKNGQFIDLESSKRVSILGDPWFD---SRRSRSIFGSVLGALSDDQWKLIAK 282 (292)
Q Consensus 206 ~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~g~~~~~~~~~~~~~~~~~~~~---~~~~~~l~i~~~~~~~~g~y~C~a~ 282 (292)
....+..+++..++|-+ .|.|.+.|.|.+-- .+..++.+..+..+. .+.+-.|.|-+....|+|-|+|.|.
T Consensus 204 a~w~vg~wetcS~tCg~-~G~q~r~V~c~qv~-----anr~~vv~~~nq~~e~p~vtstcql~ic~ewq~~a~w~tCs~r 277 (560)
T KOG4597|consen 204 AEWFVGDWETCSSTCGV-QGRQYRVVTCEQVF-----ANRENVVMRPNQTVENPVVTSTCQLVICNEWQADAGWYTCSAR 277 (560)
T ss_pred chhhcccchhhcccccc-cCCcCceeeeehhh-----ccccceeecCccccCCcceeeeeeEEEcchhhcCCCceeeccc
Confidence 34456789999999998 89999999997611 122333333333222 2444578888999999999999999
Q ss_pred ecccccc
Q psy15128 283 NIRNQQQ 289 (292)
Q Consensus 283 n~~g~~~ 289 (292)
|.+|...
T Consensus 278 cg~g~~~ 284 (560)
T KOG4597|consen 278 CGAGFLR 284 (560)
T ss_pred cccceee
Confidence 9998764
No 397
>PHA02865 MHC-like TNF binding protein; Provisional
Probab=93.69 E-value=0.16 Score=39.79 Aligned_cols=22 Identities=18% Similarity=0.377 Sum_probs=17.3
Q ss_pred ceEEEeeCCCCCCCC-eEEEeEc
Q psy15128 215 TALLECGPPKGQPEP-TLHWKKN 236 (292)
Q Consensus 215 ~~~l~C~~~~~~p~~-~~~W~~~ 236 (292)
.++|.|.|...+|.. .+.|.++
T Consensus 216 ~~tL~C~A~GFYP~~I~v~W~kd 238 (338)
T PHA02865 216 NTTLFCTFDSHYPSSVAAKWYNS 238 (338)
T ss_pred CceEEEEEEeEeCCccEEEEEec
Confidence 579999995556644 8899999
No 398
>PHA02865 MHC-like TNF binding protein; Provisional
Probab=93.28 E-value=0.91 Score=35.81 Aligned_cols=21 Identities=10% Similarity=0.270 Sum_probs=17.1
Q ss_pred cEEEEEEEeeeCCC--eeEEEEC
Q psy15128 53 IASFQCVAEGSPLP--SVFWTQE 73 (292)
Q Consensus 53 ~~~l~C~~~~~~~~--~v~W~~~ 73 (292)
.++|+|.+.|+.+. .+.|.|+
T Consensus 216 ~~tL~C~A~GFYP~~I~v~W~kd 238 (338)
T PHA02865 216 NTTLFCTFDSHYPSSVAAKWYNS 238 (338)
T ss_pred CceEEEEEEeEeCCccEEEEEec
Confidence 57999999996433 6889999
No 399
>PF06328 Lep_receptor_Ig: Ig-like C2-type domain; InterPro: IPR010457 This entry represents a ligand-binding domain that displays similarity to C2-set immunoglobulin domains (antibody constant domain 2) []. The two cysteine residues form a disulphide bridge.; PDB: 3L5H_A 1P9M_A 1I1R_A 2D9Q_B.
Probab=92.74 E-value=0.91 Score=28.20 Aligned_cols=68 Identities=18% Similarity=0.443 Sum_probs=38.6
Q ss_pred CCCccEEecCCcEEEEEEEeee-----CCCeeEEEECCeEEeeccCCCcceeEEeeecEEEEccCCCCCCeEEEEEE
Q psy15128 42 RPQDQKVGLNGIASFQCVAEGS-----PLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSA 113 (292)
Q Consensus 42 ~~~~~~~~~g~~~~l~C~~~~~-----~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~ 113 (292)
.+....+..|..++..|.+... ....+.|..++..++ ...+... ....+.+++.+........|-|..
T Consensus 9 ~p~~pvv~lGS~vtasC~l~~~c~~~~~a~~I~Wkln~~~iP---~~qy~~i-n~~~SsVT~~~~~~~~~~L~cC~l 81 (89)
T PF06328_consen 9 SPPSPVVSLGSNVTASCVLKQNCSHSVNASQIVWKLNGEKIP---GSQYRVI-NDTVSSVTLPNLNPTGATLFCCKL 81 (89)
T ss_dssp ECSSSEEETTS-EEEEEEE-CCCHCT-STTCEEEECSSCEST---CGCEEEE-STTEEEEEESS--SSEEEEEEEEE
T ss_pred ecCCCEEeCCCCEEEEEEEECCCCCCcccceEEEEECCEECC---hhHccee-CCeEEEEEEccCCCCCceEEEEEE
Confidence 3445668899999999998642 445799998887542 2222111 111245667766655555566653
No 400
>KOG0613|consensus
Probab=92.66 E-value=0.46 Score=43.74 Aligned_cols=77 Identities=10% Similarity=-0.013 Sum_probs=51.9
Q ss_pred ceEEeCCCceEEEeeCCCCCCCCe-EEEeEcCeEeccCCCceEEecCCCccccccccccccccccccccceeEEEEeecc
Q psy15128 207 DTRVASGETALLECGPPKGQPEPT-LHWKKNGQFIDLESSKRVSILGDPWFDSRRSRSIFGSVLGALSDDQWKLIAKNIR 285 (292)
Q Consensus 207 ~~~~~~g~~~~l~C~~~~~~p~~~-~~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~a~n~~ 285 (292)
...+..+..+.+.|.. .+.+.+. +.|++++.......+..+..... .....+.+..+...+.+.|.|-|.|..
T Consensus 343 ~v~a~d~~~v~m~~~~-~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~-----~ts~~~~~~~~~~~e~~~~~~~a~n~~ 416 (1205)
T KOG0613|consen 343 SVTARDNTLVEMPTAL-SGTQKPDEAQGYHGEEVSSESLGALPCPVGT-----VTSHTYTIKDAGPGEGYFTRVPAVNKG 416 (1205)
T ss_pred eeccccCcceeecccc-cCCcCCchheeeccccccccccccccccccc-----ccCcchhhhhcCcccccccccceeccC
Confidence 3345567789999997 7777774 99999876654333221111111 122256677888888999999999999
Q ss_pred cccc
Q psy15128 286 NQQQ 289 (292)
Q Consensus 286 g~~~ 289 (292)
|...
T Consensus 417 g~~~ 420 (1205)
T KOG0613|consen 417 GTEQ 420 (1205)
T ss_pred Cccc
Confidence 9764
No 401
>PF06328 Lep_receptor_Ig: Ig-like C2-type domain; InterPro: IPR010457 This entry represents a ligand-binding domain that displays similarity to C2-set immunoglobulin domains (antibody constant domain 2) []. The two cysteine residues form a disulphide bridge.; PDB: 3L5H_A 1P9M_A 1I1R_A 2D9Q_B.
Probab=92.59 E-value=0.87 Score=28.29 Aligned_cols=67 Identities=18% Similarity=0.253 Sum_probs=39.9
Q ss_pred CcceEEeCCCceEEEeeCCCCC----CCCeEEEeEcCeEeccCCCceEEecCCCccccccccccccccccccccceeEEE
Q psy15128 205 PKDTRVASGETALLECGPPKGQ----PEPTLHWKKNGQFIDLESSKRVSILGDPWFDSRRSRSIFGSVLGALSDDQWKLI 280 (292)
Q Consensus 205 ~~~~~~~~g~~~~l~C~~~~~~----p~~~~~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~ 280 (292)
++...+..|..++..|....+- ....+.|..|+..++ ..++....++. ..+++..+.....-.|-|.
T Consensus 10 p~~pvv~lGS~vtasC~l~~~c~~~~~a~~I~Wkln~~~iP---~~qy~~in~~~------SsVT~~~~~~~~~~L~cC~ 80 (89)
T PF06328_consen 10 PPSPVVSLGSNVTASCVLKQNCSHSVNASQIVWKLNGEKIP---GSQYRVINDTV------SSVTLPNLNPTGATLFCCK 80 (89)
T ss_dssp CSSSEEETTS-EEEEEEE-CCCHCT-STTCEEEECSSCEST---CGCEEEESTTE------EEEEESS--SSEEEEEEEE
T ss_pred cCCCEEeCCCCEEEEEEEECCCCCCcccceEEEEECCEECC---hhHcceeCCeE------EEEEEccCCCCCceEEEEE
Confidence 3556788999999999975442 345899999998774 34444444422 2344555555555556665
No 402
>PF02124 Marek_A: Marek's disease glycoprotein A; InterPro: IPR001038 Equid herpesvirus 1 (Equine herpesvirus 1, EHV-1) glycoprotein 13 (EHV-1 gp13) has the characteristic features of a membrane-spanning protein: an N-terminal signal sequence; a hydrophobic membrane anchor region; a charged C-terminal cytoplasmic tail; and an exterior domain with nine potential N-glycosylation sites []. EHV-1 gp13 is the structural homologue of the gC-like glycoproteins of the Human herpesvirus 1 (HHV-1) and Human herpesvirus 2 (HHV-2) (gC-1 and gC-2 respectively), Pseudorabies virus (strain Indiana-Funkhauser/Becker) (PRV) (gIII) and Human herpesvirus 3 (HHV-3) (gp66). Secretory glycoprotein GP57-65 precursor (glycoprotein A - GA) is similar to Herpesvirus glycoprotein C, and belongs to the immunoglobulin gene superfamily [, ]. GA is thought to play an immunoevasive role in the pathogenesis of Marek's disease. It is a candidate for causing the early-stage immunosuppression that occurs after MDHV infection.
Probab=91.78 E-value=4 Score=29.96 Aligned_cols=24 Identities=21% Similarity=0.387 Sum_probs=16.7
Q ss_pred eEEEeeCCCCCC-C-CeEEEeEcCeEe
Q psy15128 216 ALLECGPPKGQP-E-PTLHWKKNGQFI 240 (292)
Q Consensus 216 ~~l~C~~~~~~p-~-~~~~W~~~g~~~ 240 (292)
-...|.+ .-.| . ..+.|..++...
T Consensus 92 g~AVC~A-~CVP~~~v~l~W~v~d~~~ 117 (211)
T PF02124_consen 92 GYAVCTA-RCVPRGNVTLRWSVGDDPS 117 (211)
T ss_pred CEEEEEc-ceeeCCCeEEEEEECCccC
Confidence 3456887 6655 2 589999887654
No 403
>PF11465 Receptor_2B4: Natural killer cell receptor 2B4; InterPro: IPR024303 2B4 is a transmembrane receptor which is expressed primarily on natural killer (NK) cells. It plays a role in activating NK-mediated cytotoxicity through its interaction with CD48 on target cells in a subset of CD8 T cells []. The structure of 2B4 consists of an immunoglobulin variable domain fold and contains two beta-sheets. One of the beta-sheets, the six-stranded sheet, contains structural features that may have a role in ligand recognition and receptor function []. This entry represents the 2B4 immunoglobulin domain.; GO: 0005488 binding; PDB: 2PTU_D 2PTT_B 1Z2K_A.
Probab=91.27 E-value=0.4 Score=30.49 Aligned_cols=28 Identities=7% Similarity=-0.032 Sum_probs=23.4
Q ss_pred cccccccccccccceeEEEEeecccccc
Q psy15128 262 RSIFGSVLGALSDDQWKLIAKNIRNQQQ 289 (292)
Q Consensus 262 ~~l~i~~~~~~~~g~y~C~a~n~~g~~~ 289 (292)
..|.|..++..|+|.|.-.++|..|...
T Consensus 71 laLlIkaAq~qDSG~Y~LEvT~~sG~V~ 98 (108)
T PF11465_consen 71 LALLIKAAQPQDSGLYCLEVTNESGKVC 98 (108)
T ss_dssp TEEEESS-SGGG-EEEEEEEEETTSCEE
T ss_pred ceEEEeecCcccCceEEEEEEcCCCcEE
Confidence 4789999999999999999999999863
No 404
>PF05790 C2-set: Immunoglobulin C2-set domain; InterPro: IPR008424 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents C2-set domains, which are Ig-like domains resembling the antibody constant domain. C2-set domains are found primarily in the mammalian T-cell surface antigens CD2 (Cluster of Differentiation 2), CD4 and CD80, as well as in vascular (VCAM) and intercellular (ICAM) cell adhesion molecules. CD2 mediates T-cell adhesion via its ectodomain, and signal transduction utilising its 117-amino acid cytoplasmic tail []. CD2 displays structural and functional similarities with African swine fever virus (ASFV) LMW8-DR, a protein that is involved in cell-cell adhesion and immune response modulation, suggesting a possible role in the pathogenesis of ASFV infection []. CD4 is the primary receptor for HIV-1. CD4 has four immunoglobulin-like domains in its extracellular region that share the same structure, but can differ in sequence. Certain extracellular domains may be involved in dimerisation [].; GO: 0007155 cell adhesion, 0016021 integral to membrane; PDB: 1CID_A 1CDU_A 1WIQ_B 2NY4_B 2NY2_B 1WIP_B 1WIO_A 3S4S_G 1CDY_A 3S5L_G ....
Probab=91.11 E-value=2.2 Score=25.85 Aligned_cols=38 Identities=26% Similarity=0.469 Sum_probs=25.5
Q ss_pred CCeeEEEECCeEEeeccCCCcceeEEeeecEEEEccCCCCCCeEEEEEEE
Q psy15128 65 LPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSAL 114 (292)
Q Consensus 65 ~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~ 114 (292)
.+.+.|+..+... ......+........|+|.+.|.|.
T Consensus 26 ~~~~~l~~~~~k~------------~~~~~~~~~~~~~~~d~G~w~C~a~ 63 (80)
T PF05790_consen 26 KPSLFLENPGKKS------------LETKKLVSTFTPTTEDSGTWVCTAS 63 (80)
T ss_dssp CEEEEEECSSCEE------------EEESSEEEEESBTCGGSEEEEEEEE
T ss_pred ChhheeeccCccc------------cccceEEEEecCCCCCCEEEEEEEc
Confidence 3466676655433 2234456677778899999999995
No 405
>PHA03052 Hypothetical protein; Provisional
Probab=89.57 E-value=2.6 Score=24.33 Aligned_cols=35 Identities=20% Similarity=0.377 Sum_probs=25.6
Q ss_pred CCccEEecCCcEEEEEEEeee---CCCeeEEEECCeEE
Q psy15128 43 PQDQKVGLNGIASFQCVAEGS---PLPSVFWTQEGSQV 77 (292)
Q Consensus 43 ~~~~~~~~g~~~~l~C~~~~~---~~~~v~W~~~~~~~ 77 (292)
|....+..|..++|.|.+.-. ..+.+.|.-++..+
T Consensus 4 P~~i~~slGs~ltI~Ckv~lg~g~~~a~V~W~~N~~~~ 41 (69)
T PHA03052 4 PEGIVTSLGSNLTITCKVSLRPPTTDADVFWISNGMYY 41 (69)
T ss_pred CccEEEEccCCceEeEEEEecCCCcceEEEEEeCCcEE
Confidence 355678889999999988432 24468888887665
No 406
>PHA03189 UL14 tegument protein; Provisional
Probab=89.15 E-value=1.4 Score=33.90 Aligned_cols=78 Identities=10% Similarity=0.162 Sum_probs=41.0
Q ss_pred CcceEEeCCCceEEEeeCCCCCCCC--eEE-----EeE----------cCeEeccCCCceEEecCCC--ccccccccccc
Q psy15128 205 PKDTRVASGETALLECGPPKGQPEP--TLH-----WKK----------NGQFIDLESSKRVSILGDP--WFDSRRSRSIF 265 (292)
Q Consensus 205 ~~~~~~~~g~~~~l~C~~~~~~p~~--~~~-----W~~----------~g~~~~~~~~~~~~~~~~~--~~~~~~~~~l~ 265 (292)
+...-+..|+.+++.|.+ .....| +|. |.- .|..+. ++....+.+.. +.+......|+
T Consensus 59 pAP~l~pyGdrvtVpC~f-p~H~WPevsIrarfCys~e~s~eLv~da~~G~~l~--ndl~~~L~~~~W~Fedlg~aq~lt 135 (348)
T PHA03189 59 PAPLLVPYGDRVTVPCTF-PTHDWPEVSIRARFCYSPERSRELVVDADSGGELH--NDLTYRLPEASWKFEDLGAAQRLT 135 (348)
T ss_pred CCccccCCCceeeeeeee-cCCCCceeeEEEEEeeccccceEEEEEcccCCEec--cccceecccceeeeecccceeEEE
Confidence 345667789999999996 333322 322 211 122221 11112221111 12222333455
Q ss_pred cc-cccccccceeEEEEeecc
Q psy15128 266 GS-VLGALSDDQWKLIAKNIR 285 (292)
Q Consensus 266 i~-~~~~~~~g~y~C~a~n~~ 285 (292)
++ .+...-+|.|.|+..|..
T Consensus 136 LtF~v~t~taG~Y~CvLrN~t 156 (348)
T PHA03189 136 LTFRVSTSTAGMYECVLRNET 156 (348)
T ss_pred EEEEEEecccceEEEEecccc
Confidence 55 566777999999999864
No 407
>PF00801 PKD: PKD domain; InterPro: IPR000601 The PKD (Polycystic Kidney Disease) domain was first identified in the Polycystic Kidney Disease protein, polycystin-1 (PDK1 gene), and contains an Ig-like fold consisting of a beta-sandwich of seven strands in two sheets with a Greek key topology, although some members have additional strands []. Polycystin-1 is a large cell-surface glycoprotein involved in adhesive protein-protein and protein-carbohydrate interactions; however it is not clear if the PKD domain mediates any of these interactions. PKD domains are also found in other proteins, usually in the extracellular parts of proteins involved in interactions with other proteins. For example, domains with a PKD-type fold are found in archaeal surface layer proteins that protect the cell from extreme environments [], and in the human VPS10 domain-containing receptor SorCS2 [].; PDB: 1B4R_A 2KZW_A 2C4X_A 2C26_A 2Y72_B 3JQU_A 3JS7_B 1WGO_A 1L0Q_A.
Probab=88.60 E-value=2.2 Score=24.82 Aligned_cols=60 Identities=15% Similarity=0.195 Sum_probs=37.2
Q ss_pred eEEeCCCceEEEeeCCCCCCCCeEEEeEcC-eEeccCCCceEEecCCCcccccccccccccccccccccee--EEEEeec
Q psy15128 208 TRVASGETALLECGPPKGQPEPTLHWKKNG-QFIDLESSKRVSILGDPWFDSRRSRSIFGSVLGALSDDQW--KLIAKNI 284 (292)
Q Consensus 208 ~~~~~g~~~~l~C~~~~~~p~~~~~W~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y--~C~a~n~ 284 (292)
..+..|+.+.|.... .......+.|.+++ .... .+..+. ......|.| +..|.|.
T Consensus 6 ~~~~~g~~v~f~~~~-~~g~~~~y~W~fgd~~~~~--~~~~~t-------------------~ty~~~G~y~V~ltv~n~ 63 (69)
T PF00801_consen 6 TYVPTGQPVTFTASS-SDGSPVTYSWDFGDNGTVS--TGSSVT-------------------HTYSSPGTYTVTLTVTNG 63 (69)
T ss_dssp SCEBTTSEEEEEETT-TTSSECEEEEE-SSESEEE--CSSEEE-------------------EEESSSEEEEEEEEEEET
T ss_pred CEEcCCCEEEEEEEc-cCCCCeEEEEEECCCCccc--cCCCEE-------------------EEcCCCeEEEEEEEEEEC
Confidence 356789999999986 44455699999987 2221 111111 223357876 5677788
Q ss_pred ccccc
Q psy15128 285 RNQQQ 289 (292)
Q Consensus 285 ~g~~~ 289 (292)
.|..+
T Consensus 64 ~g~~t 68 (69)
T PF00801_consen 64 VGSAT 68 (69)
T ss_dssp TSEEE
T ss_pred CCCcC
Confidence 88764
No 408
>PF06832 BiPBP_C: Penicillin-Binding Protein C-terminus Family; InterPro: IPR009647 This conserved region of approximately 90 residues is found in a sub-group of bacterial Penicillin-Binding Proteins (PBPs). A variable length loop region separates this region from the transpeptidase unit (IPR001460 from INTERPRO). It is predicted to be a beta fold.
Probab=88.42 E-value=4.2 Score=25.17 Aligned_cols=55 Identities=9% Similarity=0.200 Sum_probs=34.9
Q ss_pred CCceEEEeeCCCCCCCCeEEEeEcCeEeccC-CCceEEecCCCccccccccccccccccccccceeEEEEeeccccccc
Q psy15128 213 GETALLECGPPKGQPEPTLHWKKNGQFIDLE-SSKRVSILGDPWFDSRRSRSIFGSVLGALSDDQWKLIAKNIRNQQQH 290 (292)
Q Consensus 213 g~~~~l~C~~~~~~p~~~~~W~~~g~~~~~~-~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~a~n~~g~~~~ 290 (292)
.+.+.|.+.. +. ..+.|+.||+.+-.. ....+. ......|.|+-.+....|....
T Consensus 31 ~~~l~l~a~~--~~--~~~~W~vdg~~~g~~~~~~~~~-------------------~~~~~~G~h~l~vvD~~G~~~~ 86 (89)
T PF06832_consen 31 RQPLVLKAAG--GR--GPVYWFVDGEPLGTTQPGHQLF-------------------WQPDRPGEHTLTVVDAQGRSAS 86 (89)
T ss_pred cceEEEEEeC--CC--CcEEEEECCEEcccCCCCCeEE-------------------eCCCCCeeEEEEEEcCCCCEEE
Confidence 4556666653 33 389999999998311 122222 1234788999999888887653
No 409
>PHA03282 envelope glycoprotein E; Provisional
Probab=83.73 E-value=24 Score=29.40 Aligned_cols=22 Identities=18% Similarity=0.567 Sum_probs=19.8
Q ss_pred EEEEccCCCCCCeEEEEEEEeC
Q psy15128 95 TLRIQGVQKEDAGFFVCSALSV 116 (292)
Q Consensus 95 ~l~i~~~~~~d~g~Y~C~~~~~ 116 (292)
.|.+.++..+++|.|-|.+...
T Consensus 334 dL~F~nAp~saSGLYVfVl~yN 355 (540)
T PHA03282 334 NLQLRDASEASGGLYVCVVYVN 355 (540)
T ss_pred ceEecCCCcccCceEEEEEEEC
Confidence 6999999999999999998743
No 410
>PHA03112 IL-18 binding protein; Provisional
Probab=82.94 E-value=4.7 Score=27.33 Aligned_cols=27 Identities=22% Similarity=0.358 Sum_probs=20.6
Q ss_pred eCCCceEEEeeCCCCCCC-CeEEEeEcC
Q psy15128 211 ASGETALLECGPPKGQPE-PTLHWKKNG 237 (292)
Q Consensus 211 ~~g~~~~l~C~~~~~~p~-~~~~W~~~g 237 (292)
..++.+.|+|.+....|. ..+.|..++
T Consensus 36 k~~~~vvL~C~gcs~fp~fS~lYWl~gn 63 (141)
T PHA03112 36 KETEKVVLECRGCSYFPKFSYVYWLIGN 63 (141)
T ss_pred CCCCEEEEEEECccCCCCceEEEEEcCC
Confidence 458999999998544564 578999765
No 411
>PF02124 Marek_A: Marek's disease glycoprotein A; InterPro: IPR001038 Equid herpesvirus 1 (Equine herpesvirus 1, EHV-1) glycoprotein 13 (EHV-1 gp13) has the characteristic features of a membrane-spanning protein: an N-terminal signal sequence; a hydrophobic membrane anchor region; a charged C-terminal cytoplasmic tail; and an exterior domain with nine potential N-glycosylation sites []. EHV-1 gp13 is the structural homologue of the gC-like glycoproteins of the Human herpesvirus 1 (HHV-1) and Human herpesvirus 2 (HHV-2) (gC-1 and gC-2 respectively), Pseudorabies virus (strain Indiana-Funkhauser/Becker) (PRV) (gIII) and Human herpesvirus 3 (HHV-3) (gp66). Secretory glycoprotein GP57-65 precursor (glycoprotein A - GA) is similar to Herpesvirus glycoprotein C, and belongs to the immunoglobulin gene superfamily [, ]. GA is thought to play an immunoevasive role in the pathogenesis of Marek's disease. It is a candidate for causing the early-stage immunosuppression that occurs after MDHV infection.
Probab=81.47 E-value=19 Score=26.58 Aligned_cols=142 Identities=18% Similarity=0.240 Sum_probs=67.4
Q ss_pred eeEEEECCeEEeeccCCCcceeE------EeeecEEEE-ccCCCCCCeEEEEEEEeCCcC-eeEEEEEEEEeecCCCCCe
Q psy15128 67 SVFWTQEGSQVLMFPGNAYGHLH------VTQEGTLRI-QGVQKEDAGFFVCSALSVAGS-TTVRAFLQVTSVEDTPPPI 138 (292)
Q Consensus 67 ~v~W~~~~~~~~~~~~~~~~~~~------~~~~~~l~i-~~~~~~d~g~Y~C~~~~~~~~-~~~~~~l~v~~~~~~~~~~ 138 (292)
.+.|+.++..+. ......... ....+.|.+ .+...+..-..+|.+.-.... .....+..+. ....++|.
T Consensus 8 ~~~Wf~dg~~v~--~~~~~~~~~~~~~G~~s~vStl~~~~~~~~~~pp~i~C~v~W~r~~v~~~r~~a~~~-P~Vy~~P~ 84 (211)
T PF02124_consen 8 RFRWFEDGNPVE--PRFIRDSSQVWSDGLFSRVSTLTLPGNSADSPPPSIRCQVTWYRDSVSETRFNATAT-PSVYPKPR 84 (211)
T ss_pred EEEEEECCEeCC--ccceeeEEEEecCCcEEEEEEEEecCCCCCCCCCcceEEEEEccCCCeeeEeecccc-cceecCCE
Confidence 678998887653 111111111 222335666 333334445789998743222 2222111111 11123444
Q ss_pred EEeCCCCceecCCCeEEEEeEeccCCC--CceEEEeCCeeCCCCCccE----EEcCCCcEEEEeeecCCCCCCcceEEeC
Q psy15128 139 VQVGPSNQTLPLHSVAFLPCQAVGSPP--PHIRWYKNGNSLPPEDTRI----NVSSSGSLQIDVLRDDFRAEPKDTRVAS 212 (292)
Q Consensus 139 ~~~~~~~~~~~~g~~v~l~C~~~~~p~--~~~~W~~~~~~l~~~~~~~----~~~~~~~l~i~~~~~~d~g~~~~~~~~~ 212 (292)
+.+ ....| ...|.+.--|. ..+.|.-++.......... -....+...|.+..... ..
T Consensus 85 vsv-----~F~~g---~AVC~A~CVP~~~v~l~W~v~d~~~~~~~~~~~~g~C~~~pglvnirs~~pls---------~~ 147 (211)
T PF02124_consen 85 VSV-----RFEDG---YAVCTARCVPRGNVTLRWSVGDDPSPAPAATEITGVCAEHPGLVNIRSRRPLS---------DE 147 (211)
T ss_pred EEE-----EecCC---EEEEEcceeeCCCeEEEEEECCccCCCCCceeecCcccCCcceeEeecccCCC---------cc
Confidence 433 22233 34677654442 5799998776542211111 11122345555443322 23
Q ss_pred CCceEEEeeCCCCCCCC
Q psy15128 213 GETALLECGPPKGQPEP 229 (292)
Q Consensus 213 g~~~~l~C~~~~~~p~~ 229 (292)
...++.+|.. .|+|..
T Consensus 148 ~~~~~YtC~l-~GYP~~ 163 (211)
T PF02124_consen 148 DGPVEYTCRL-IGYPDI 163 (211)
T ss_pred CCceeEEEEE-eeCCCC
Confidence 5678899997 898853
No 412
>PHA03283 envelope glycoprotein E; Provisional
Probab=79.86 E-value=16 Score=30.93 Aligned_cols=70 Identities=16% Similarity=0.172 Sum_probs=45.0
Q ss_pred cccCCcCCCeeEEEEEEecccccccccEEEEEeCCCc---------EEeC------------CCccEEecCCcEEEEEEE
Q psy15128 2 ITEVKKSDEGKYQCYVQNMVGERETKPALLTVHAPPS---------FVVR------------PQDQKVGLNGIASFQCVA 60 (292)
Q Consensus 2 i~~v~~~D~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~---------~~~~------------~~~~~~~~g~~~~l~C~~ 60 (292)
|.+++..++|.|+-..++..+..... +.|.|+.++. ..+. -......+|+++.+.-..
T Consensus 138 I~~at~~~aGVYtly~r~d~~~~~~v-flvtVk~~~~~~~~~Pp~~~pv~P~~h~a~f~v~nYhS~vf~~GDtf~lsi~l 216 (542)
T PHA03283 138 IQRATPNIAGVYTLHVSSDGMMKHSV-FFVTVKKPPKQPQTPPAPLVPQVPARHHTDFHVRGYHSRVYSPGDSFDLSVHL 216 (542)
T ss_pred EEecccccCeEEEEEecCCCceEEEE-EEEEecCCCcCCCCCCCCccccCCccCCceEEEecceeEEecCCCceeEeEEE
Confidence 67899999999999999876644444 7788875211 1111 123445679988886654
Q ss_pred eee---C--CCeeEEEE
Q psy15128 61 EGS---P--LPSVFWTQ 72 (292)
Q Consensus 61 ~~~---~--~~~v~W~~ 72 (292)
... + ...+.|++
T Consensus 217 ~s~~~d~~fs~~i~Wyy 233 (542)
T PHA03283 217 ESDIGDPSFSATIDWYY 233 (542)
T ss_pred eeccCCCCceEEEEEEE
Confidence 331 1 23788986
No 413
>PHA03286 envelope glycoprotein E; Provisional
Probab=79.25 E-value=30 Score=28.73 Aligned_cols=83 Identities=10% Similarity=0.036 Sum_probs=48.9
Q ss_pred ecEEEEccCCCCCCeEEEEEEEeCCcCeeEEE-EEEEEeecCCCCCeE--------------EeCCCCceecCCCeEEEE
Q psy15128 93 EGTLRIQGVQKEDAGFFVCSALSVAGSTTVRA-FLQVTSVEDTPPPIV--------------QVGPSNQTLPLHSVAFLP 157 (292)
Q Consensus 93 ~~~l~i~~~~~~d~g~Y~C~~~~~~~~~~~~~-~l~v~~~~~~~~~~~--------------~~~~~~~~~~~g~~v~l~ 157 (292)
.+.|.|.+++..++|.|+-..+|..+.....+ .+.|.+.....++.. ...+......+|+++.+.
T Consensus 126 ~~~L~I~nAt~qnaGiYtly~rnd~~~~~~~vflVtV~~~~~~r~p~~~~pv~p~~~~~~f~l~ny~S~lF~~GDTF~vS 205 (492)
T PHA03286 126 GKELTILNASSQNAGIYIRYSRNGTRTAVMDVLVVWVSGHGRARDPTMNIPITPPSTRVDLSLKNFKAFLYNVGDTVDAS 205 (492)
T ss_pred CCceEEeeccccccceEEEEEcCCCCcEEEEEEEEEEecCCCCCCCCcccCCCCcccceEEEEecccceEecCCCeEEEE
Confidence 35799999999999999999887766654443 344432211111111 112233335579998776
Q ss_pred eEec-cC-C---CCceEEEeCCe
Q psy15128 158 CQAV-GS-P---PPHIRWYKNGN 175 (292)
Q Consensus 158 C~~~-~~-p---~~~~~W~~~~~ 175 (292)
-... .. . ...+.|++-..
T Consensus 206 v~l~~~~~d~~Fsl~i~W~y~p~ 228 (492)
T PHA03286 206 VTAHLTNWAGAFSLEFRVLFLPY 228 (492)
T ss_pred EEEeecccCCCceEEEEEEEecC
Confidence 6553 11 1 23589997543
No 414
>PF05790 C2-set: Immunoglobulin C2-set domain; InterPro: IPR008424 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents C2-set domains, which are Ig-like domains resembling the antibody constant domain. C2-set domains are found primarily in the mammalian T-cell surface antigens CD2 (Cluster of Differentiation 2), CD4 and CD80, as well as in vascular (VCAM) and intercellular (ICAM) cell adhesion molecules. CD2 mediates T-cell adhesion via its ectodomain, and signal transduction utilising its 117-amino acid cytoplasmic tail []. CD2 displays structural and functional similarities with African swine fever virus (ASFV) LMW8-DR, a protein that is involved in cell-cell adhesion and immune response modulation, suggesting a possible role in the pathogenesis of ASFV infection []. CD4 is the primary receptor for HIV-1. CD4 has four immunoglobulin-like domains in its extracellular region that share the same structure, but can differ in sequence. Certain extracellular domains may be involved in dimerisation [].; GO: 0007155 cell adhesion, 0016021 integral to membrane; PDB: 1CID_A 1CDU_A 1WIQ_B 2NY4_B 2NY2_B 1WIP_B 1WIO_A 3S4S_G 1CDY_A 3S5L_G ....
Probab=78.99 E-value=2.6 Score=25.59 Aligned_cols=16 Identities=19% Similarity=0.426 Sum_probs=13.2
Q ss_pred ccCCcCCCeeEEEEEE
Q psy15128 3 TEVKKSDEGKYQCYVQ 18 (292)
Q Consensus 3 ~~v~~~D~G~Y~C~~~ 18 (292)
...+..|+|.+.|.|.
T Consensus 48 ~~~~~~d~G~w~C~a~ 63 (80)
T PF05790_consen 48 FTPTTEDSGTWVCTAS 63 (80)
T ss_dssp ESBTCGGSEEEEEEEE
T ss_pred ecCCCCCCEEEEEEEc
Confidence 3456799999999995
No 415
>PHA03189 UL14 tegument protein; Provisional
Probab=78.71 E-value=23 Score=27.61 Aligned_cols=21 Identities=14% Similarity=0.189 Sum_probs=16.7
Q ss_pred CCccEEecCCcEEEEEEEeee
Q psy15128 43 PQDQKVGLNGIASFQCVAEGS 63 (292)
Q Consensus 43 ~~~~~~~~g~~~~l~C~~~~~ 63 (292)
+.+..+..|+.+++.|.+...
T Consensus 59 pAP~l~pyGdrvtVpC~fp~H 79 (348)
T PHA03189 59 PAPLLVPYGDRVTVPCTFPTH 79 (348)
T ss_pred CCccccCCCceeeeeeeecCC
Confidence 456678889999999988543
No 416
>PF02480 Herpes_gE: Alphaherpesvirus glycoprotein E; InterPro: IPR003404 Glycoprotein E (gE) of Alphaherpesvirus forms a complex with glycoprotein I (gI), functioning as an immunoglobulin G (IgG) Fc binding protein. gE is involved in virus spread but is not essential for propagation [].; GO: 0016020 membrane; PDB: 2GJ7_F 2GIY_B.
Probab=78.60 E-value=2.7 Score=34.99 Aligned_cols=72 Identities=17% Similarity=0.220 Sum_probs=13.0
Q ss_pred CcccCCcCCCeeEEEEEEecccccccccEEEEEeCCCcE--------------------EeCCCccEEecCCcEEEEEEE
Q psy15128 1 MITEVKKSDEGKYQCYVQNMVGERETKPALLTVHAPPSF--------------------VVRPQDQKVGLNGIASFQCVA 60 (292)
Q Consensus 1 ~i~~v~~~D~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~~--------------------~~~~~~~~~~~g~~~~l~C~~ 60 (292)
.|.++++.|+|.|+-..++..+......+.|.|..+... ...........|+++.+.-.+
T Consensus 92 ~i~~a~~~~~GvY~l~~~~~~~~~~~~~~~v~v~~~~~~~~~p~p~~p~~p~~~~~~~~~~~~~s~vf~~Gdtf~~~v~l 171 (439)
T PF02480_consen 92 SILNATEQDSGVYTLYVRNDSGWAHQSVVFVTVKGPAPDPRTPPPHHPIVPHRHGATFHLKNYHSHVFSPGDTFHLSVHL 171 (439)
T ss_dssp ------------------------------------------------------SEEEEEE--SEEE--TT--EE---EE
T ss_pred EEeccccccCeeEEEEecCCCCceEEEEEEEEEcCCCcCCCCCCCCCCCCCcccccEEEEeccceEEecCCCcEEEeEEE
Confidence 378999999999999998776665555577777642111 112233455679988877765
Q ss_pred eee--C----CCeeEEEE
Q psy15128 61 EGS--P----LPSVFWTQ 72 (292)
Q Consensus 61 ~~~--~----~~~v~W~~ 72 (292)
... . ...|.|++
T Consensus 172 ~~~~~d~~~f~~~i~W~~ 189 (439)
T PF02480_consen 172 QSEAHDDPPFSLEIDWYY 189 (439)
T ss_dssp EEEESSS--EEEEEEEEE
T ss_pred EeccCCCCCeeEEEEEEE
Confidence 332 1 12688986
No 417
>PHA03286 envelope glycoprotein E; Provisional
Probab=77.34 E-value=20 Score=29.71 Aligned_cols=71 Identities=11% Similarity=-0.015 Sum_probs=46.1
Q ss_pred cccCCcCCCeeEEEEEEecccccccccEEEEEeC-----CCcEE--------------eCCCccEEecCCcEEEEEEEee
Q psy15128 2 ITEVKKSDEGKYQCYVQNMVGERETKPALLTVHA-----PPSFV--------------VRPQDQKVGLNGIASFQCVAEG 62 (292)
Q Consensus 2 i~~v~~~D~G~Y~C~~~~~~~~~~~~~~~l~v~~-----~p~~~--------------~~~~~~~~~~g~~~~l~C~~~~ 62 (292)
|.+++..++|.|+-..+++.+......+.|.|.. +|... .........+|+++.+.-....
T Consensus 131 I~nAt~qnaGiYtly~rnd~~~~~~~vflVtV~~~~~~r~p~~~~pv~p~~~~~~f~l~ny~S~lF~~GDTF~vSv~l~~ 210 (492)
T PHA03286 131 ILNASSQNAGIYIRYSRNGTRTAVMDVLVVWVSGHGRARDPTMNIPITPPSTRVDLSLKNFKAFLYNVGDTVDASVTAHL 210 (492)
T ss_pred EeeccccccceEEEEEcCCCCcEEEEEEEEEEecCCCCCCCCcccCCCCcccceEEEEecccceEecCCCeEEEEEEEee
Confidence 6789999999999999987766555557778841 12111 1223445567998877765541
Q ss_pred --e---CCCeeEEEE
Q psy15128 63 --S---PLPSVFWTQ 72 (292)
Q Consensus 63 --~---~~~~v~W~~ 72 (292)
. -...+.|++
T Consensus 211 ~~~d~~Fsl~i~W~y 225 (492)
T PHA03286 211 TNWAGAFSLEFRVLF 225 (492)
T ss_pred cccCCCceEEEEEEE
Confidence 1 123788986
No 418
>PF03921 ICAM_N: Intercellular adhesion molecule (ICAM), N-terminal domain; InterPro: IPR013768 Intercellular adhesion molecules (ICAMs) and vascular cell adhesion molecule-1 (VCAM-1) are part of the immunoglobulin superfamily. They are important in inflammation, immune responses and in intracellular signalling events []. The ICAM family consists of five members, designated ICAM-1 to ICAM-5. They are known to bind to leucocyte integrins CD11/CD18 during inflammation and in immune responses. In addition, ICAMs may exist in soluble forms in human plasma, due to activation and proteolysis mechanisms at cell surfaces. ICAM-1 (CD54) contains five Ig-like domains. It is expressed on leucocytes, endothelial and epithelial cells, and is upregulated in response to bacterial invasion. The protein is a ligand for lymphocyte-function associated (LFA) antigens and also a receptor for CD11a,b/CD18, fibrinogen, human rhinovirus and Plasmodium falciparum-infected erythrocytes. ICAM-1 binding sites for CD11a/CD18 and its other binding partners are located in the first domain and are overlapping. ICAM-1 domain 2 seems to play an important role in maintaining the conformation of domain 1 and particularly the structural integrity of the LFA-1 ligand-binding site []. The 3-dimensional atomic structure of the tandem N-terminal Ig-like domains (D1 and D2) of ICAM-1 has been determined to 2.2A resolution and fitted into a cryoelectron microscopy reconstruction of a rhinovirus-ICAM-1 complex []. Extensive charge interactions between ICAM-1 and human rhinovirusesare largely conserved in major and minor receptor groups of rhinoviruses. The interaction of ICAMs with LFA-1 is mediated by a divalent cation bound to the insertion (I)-domain on the alpha chain of LFA-1 and the carboxyl group of a conserved glutamic acid residue on ICAMs. ICAM-2 (CD102) has two Ig-like domains. It is expressed on endothelial cells, leucocytes and platelets, and binds to CD11a'b/CD18. The protein is refractory to proinflammatory cytokines, and plays an important role in the adhesion of leucocytes to the uninduced endothelium []. ICAM-3 (CD50) contains five Ig-like domains and binds to leucocyte integrins CD11a'd/CD18. The protein plays an important role in the immune response and perhaps in signal transduction []. ICAM-4 (LW blood group Ag) is red blood cell (RBC) specific and binds to CD11a'b/CD18. It is associated with the RBC Rh antigens and could be important in retaining immature red cells in the bone marrow, or in the uptake of senescent cells into the spleen []. ICAM-5 (telencephalin) has nine Ig-like domains and is confined to the telencephalon of the brain. The role of this CD11a/CD18 binding molecule is not yet known []. VCAM-1 was first described as a cytokine-inducible endothelial adhesion molecule. It can bind to leucocyte integrin VL-4 (very late antigen-4) to recruit leucocytes to sites of inflammation []. The predominant form of VCAM-1 in vivo has an N-terminal extracellular region comprising seven Ig-like domains []. A conserved integrin-binding motif has been identified in domains 1 and 4, variants of which are present in the N-terminal domain of all members of the integrin-binding subgroup of the immunoglobulin superfamily. The structure of a VLA-4-binding fragment comprising the first two domains of VCAM-1 has been determined to 1.8A resolution. The integrin-binding motif is exposed and forms the N-terminal region of the loop between beta-strands C and D of domain 1 []. VCAM-1 domains 1 and 2 are structurally similar to ICAM-1 and ICAM-2 []. This entry represents the N-terminal domain of ICAM proteins such as ICAM-2, ICAM-3 and ICAM-4.; PDB: 3BN3_B 1T0P_B 1ZXQ_A 3TCX_A 1MQ8_A 1Z7Z_I 1IC1_A 1IAM_A.
Probab=74.71 E-value=18 Score=22.62 Aligned_cols=81 Identities=15% Similarity=0.117 Sum_probs=45.1
Q ss_pred EEeCCCccEEecCCcEEEEEEEeeeCCCeeEEEECCeEEeeccCCCcceeEEeeecEEEEccCCCCCCeEEEEEEEeCCc
Q psy15128 39 FVVRPQDQKVGLNGIASFQCVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAG 118 (292)
Q Consensus 39 ~~~~~~~~~~~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~~ 118 (292)
+.+.|....+..|+++.+.|+..-..+..+.|.-.-...... .......+.+.+++. | ..-.|.+.-...
T Consensus 6 v~v~P~~~vV~~G~Sv~VNCStsC~~p~~~GLET~L~k~~~~--------~g~~W~~f~LsnV~~-d-s~~~C~~~C~g~ 75 (91)
T PF03921_consen 6 VRVSPEEPVVPPGGSVWVNCSTSCPQPEKIGLETSLSKTELD--------SGPQWKAFQLSNVTE-D-SSPLCFFNCSGE 75 (91)
T ss_dssp EEEESSEEEEETTEEEEEEEEESSSS-SEEEEESSSEEEEEE--------EETTEEEEEEEEE-S-C-EEEEEEEEETTE
T ss_pred EEEECCccEECCCCCEEEEEcCCCCCCCcceEEEecCCcccC--------CCCcEEEEEEEcccc-C-CeEEEEEEcCCe
Confidence 345566778889999999999843222244553221111110 111234677778885 4 456798876433
Q ss_pred CeeEEEEEEEE
Q psy15128 119 STTVRAFLQVT 129 (292)
Q Consensus 119 ~~~~~~~l~v~ 129 (292)
.......++|+
T Consensus 76 Q~~~~~~ItVY 86 (91)
T PF03921_consen 76 QSSASANITVY 86 (91)
T ss_dssp EEEEEEEEEEE
T ss_pred EEEeEEeeEEe
Confidence 44555566665
No 419
>PHA03283 envelope glycoprotein E; Provisional
Probab=69.52 E-value=65 Score=27.53 Aligned_cols=82 Identities=22% Similarity=0.286 Sum_probs=46.6
Q ss_pred ecEEEEccCCCCCCeEEEEEEEeCCcCeeEEEEEEEEeecC---CCCC-eEEe------------CCCCceecCCCeEEE
Q psy15128 93 EGTLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVTSVED---TPPP-IVQV------------GPSNQTLPLHSVAFL 156 (292)
Q Consensus 93 ~~~l~i~~~~~~d~g~Y~C~~~~~~~~~~~~~~l~v~~~~~---~~~~-~~~~------------~~~~~~~~~g~~v~l 156 (292)
.+.|.|.+++.+++|.|+-..++..+.......+.|..... .+++ ...+ ........+|+++.+
T Consensus 133 ~~~l~I~~at~~~aGVYtly~r~d~~~~~~vflvtVk~~~~~~~~~Pp~~~pv~P~~h~a~f~v~nYhS~vf~~GDtf~l 212 (542)
T PHA03283 133 RSVLQIQRATPNIAGVYTLHVSSDGMMKHSVFFVTVKKPPKQPQTPPAPLVPQVPARHHTDFHVRGYHSRVYSPGDSFDL 212 (542)
T ss_pred CCeeEEEecccccCeEEEEEecCCCceEEEEEEEEecCCCcCCCCCCCCccccCCccCCceEEEecceeEEecCCCceeE
Confidence 35799999999999999998887555333334444443111 1111 1111 112233457998877
Q ss_pred EeEeccC---C--CCceEEEeCC
Q psy15128 157 PCQAVGS---P--PPHIRWYKNG 174 (292)
Q Consensus 157 ~C~~~~~---p--~~~~~W~~~~ 174 (292)
.-..... + ...+.|+.-.
T Consensus 213 si~l~s~~~d~~fs~~i~Wyy~p 235 (542)
T PHA03283 213 SVHLESDIGDPSFSATIDWYYMN 235 (542)
T ss_pred eEEEeeccCCCCceEEEEEEEec
Confidence 6554322 2 2358999743
No 420
>KOG1026|consensus
Probab=68.74 E-value=26 Score=31.57 Aligned_cols=34 Identities=26% Similarity=0.394 Sum_probs=27.0
Q ss_pred ceecCCCeEEEEeEeccCCCCceEEEeCCeeCCC
Q psy15128 146 QTLPLHSVAFLPCQAVGSPPPHIRWYKNGNSLPP 179 (292)
Q Consensus 146 ~~~~~g~~v~l~C~~~~~p~~~~~W~~~~~~l~~ 179 (292)
..+..+..+++.|.+.+.|.|...|+.++.....
T Consensus 202 ~~v~~~~~~~~~c~~~~~~vp~~~~~~~~~~~~~ 235 (774)
T KOG1026|consen 202 LTVEEGSSITLKCSQAGIPVPCHYWFPNCLASSN 235 (774)
T ss_pred hhhcccchheeeeecccCCCcceeeecccccccC
Confidence 3456788999999999999999999986655443
No 421
>PHA03281 envelope glycoprotein E; Provisional
Probab=68.19 E-value=65 Score=27.67 Aligned_cols=82 Identities=13% Similarity=0.240 Sum_probs=47.6
Q ss_pred ecEEEEccCCCCCCeEEEEEEEeCCcCeeE-EEEEEEEeec--CCCCCeEEeCCC----------CceecCCCeEEEEeE
Q psy15128 93 EGTLRIQGVQKEDAGFFVCSALSVAGSTTV-RAFLQVTSVE--DTPPPIVQVGPS----------NQTLPLHSVAFLPCQ 159 (292)
Q Consensus 93 ~~~l~i~~~~~~d~g~Y~C~~~~~~~~~~~-~~~l~v~~~~--~~~~~~~~~~~~----------~~~~~~g~~v~l~C~ 159 (292)
.+.|.|.+++..++|.|+-..+...|.... ...++|.... ..++|.+...+. .....+|+++.|.-.
T Consensus 297 ~~vL~I~nAT~~naGVYtly~rg~~G~s~~svfLVtVkg~~~~rip~p~Vtpk~hga~F~vknYhShVF~pGDTFsl~v~ 376 (642)
T PHA03281 297 PGVLKFEHMEAHHAGVYIWNLQGSDGENMYATFLVKLKGDEENHIDLPAVTPKPKGAEFHMWHYHSHVFSVGDTFSLAMH 376 (642)
T ss_pred CCeeEEEecccccceeEEEEecCCCCcceeEEEEEEecCCcccCCCCCCccccccCceEEEeccceeEecCCCeeEEEEE
Confidence 458999999999999999888755454333 4445554322 112222222221 222457998877665
Q ss_pred eccC--C---CCceEEEeCC
Q psy15128 160 AVGS--P---PPHIRWYKNG 174 (292)
Q Consensus 160 ~~~~--p---~~~~~W~~~~ 174 (292)
.... . ...+.|+.-.
T Consensus 377 L~s~ihD~pFsleI~Wyy~p 396 (642)
T PHA03281 377 LQYKIHDAPFDLLLEWLYVP 396 (642)
T ss_pred EeeeccCCCceeEEEEEEec
Confidence 5322 1 2368999743
No 422
>cd05890 Ig2_Nectin-1_like Second immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111) and similar proteins. Ig2_Nectin-1_like: domain similar to the second immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111). Nectin-1 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectins also heterophilically trans-interact with other CAMs such as nectin-like molecules (necls); nectin-1 for example, has been shown to trans-interact with necl-1. Nectins also interact with various other proteins, including the actin filament (F-actin)-binding protein, afadin. Mutation in the human nectin-1 gene is associ
Probab=66.98 E-value=28 Score=21.96 Aligned_cols=62 Identities=10% Similarity=0.100 Sum_probs=33.3
Q ss_pred eEEEeeCCCCCCCCeEEEeEc--CeEeccCCCceEEecCCCccccccccccccccccccccceeEEEEeec
Q psy15128 216 ALLECGPPKGQPEPTLHWKKN--GQFIDLESSKRVSILGDPWFDSRRSRSIFGSVLGALSDDQWKLIAKNI 284 (292)
Q Consensus 216 ~~l~C~~~~~~p~~~~~W~~~--g~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~a~n~ 284 (292)
+.=.|.+..|.|++.|+|.-+ |.. . ....-..++... ....+........|.-..+|+++.+
T Consensus 23 ~VA~CiSa~GrPpa~ItW~t~l~G~~-e----tq~~~~~~GT~T--V~S~y~lVPs~~~~gk~lTCvV~h~ 86 (98)
T cd05890 23 LVATCVSANGKPPSVVRWDTRLKGEA-E----FQEIRNQNGTVT--VISRYRLVPSREAHKQKLTCIVNYR 86 (98)
T ss_pred EEEEEEcCCCcCCcEeEEEccCCCce-e----eeeeCCCCCCEE--EEEEEEEeECHHHcCCEeEEEEEec
Confidence 445699779999999999752 321 0 001111111111 1122333344455555899999865
No 423
>PRK14081 triple tyrosine motif-containing protein; Provisional
Probab=66.07 E-value=1e+02 Score=27.67 Aligned_cols=123 Identities=11% Similarity=-0.009 Sum_probs=65.4
Q ss_pred cEEecCCcEEEEEEEeeeCCCeeEEEECCeEEeeccCCCcceeEEeeecEEEEccCCCCCCeEEEEEEEeCCc--C----
Q psy15128 46 QKVGLNGIASFQCVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAG--S---- 119 (292)
Q Consensus 46 ~~~~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~~--~---- 119 (292)
.....|+.+.|...+.|.....+.....|..+.. ........+. -.+..+|.|.-.+.-... .
T Consensus 300 s~ql~g~~I~ika~a~GG~~llYrf~I~G~~~e~--------~~Y~~~n~~~---w~P~~~G~Y~I~v~VKDk~S~~eyD 368 (667)
T PRK14081 300 SPQLTDTDIELKAVAEGGKELLYRFIIKGKESED--------SGYIRNNIYT---WKPKIAGKYSITLWVKDISSKGEYE 368 (667)
T ss_pred CCeecCceEEEEEEecCCCceEEEEEECCcEEee--------ccccccceEE---EeeCCCceEEEEEEEEcCcCccccc
Confidence 3456799999999998755445554444443311 1111222333 334568999877653221 1
Q ss_pred eeEEEEEEEEeecCCCCCeE-EeCCCCceecCCCeEEEEeEeccCCCCceE--EEeCCeeCCC
Q psy15128 120 TTVRAFLQVTSVEDTPPPIV-QVGPSNQTLPLHSVAFLPCQAVGSPPPHIR--WYKNGNSLPP 179 (292)
Q Consensus 120 ~~~~~~l~v~~~~~~~~~~~-~~~~~~~~~~~g~~v~l~C~~~~~p~~~~~--W~~~~~~l~~ 179 (292)
......+.+......|..+. .+.+....+..|+.+.+.|.+.+.....+. -.++|..+..
T Consensus 369 ~~~~v~f~i~~~~~~p~~I~~vl~d~~~~~lvG~~i~i~v~a~gg~~~lY~f~ik~ng~~ve~ 431 (667)
T PRK14081 369 DKSSIDYTIEEKSKEPIKIEDVILDKGKHILKGEEIKIRVIAEGGTNLRYSFIIKKDGKEEEK 431 (667)
T ss_pred ceEEEEEEEcccCCCCeEEEEEEECCCCceEeCCeEEEEEEecCCCeEEEEEEEEECCEEEEE
Confidence 23334444443211122122 223344567789999999999766444433 2346766543
No 424
>PF15096 G6B: G6B family
Probab=62.98 E-value=14 Score=26.28 Aligned_cols=14 Identities=14% Similarity=0.062 Sum_probs=11.4
Q ss_pred cccccccceeEEEE
Q psy15128 268 VLGALSDDQWKLIA 281 (292)
Q Consensus 268 ~~~~~~~g~y~C~a 281 (292)
.++.-|+|+|.|..
T Consensus 80 LLs~GDSGTFfCkG 93 (224)
T PF15096_consen 80 LLSAGDSGTFFCKG 93 (224)
T ss_pred HhhcCCccceEecC
Confidence 46778999999984
No 425
>PHA03240 envelope glycoprotein M; Provisional
Probab=54.76 E-value=24 Score=25.87 Aligned_cols=18 Identities=33% Similarity=0.433 Sum_probs=14.0
Q ss_pred ecEEEEccCCCCCCeEEE
Q psy15128 93 EGTLRIQGVQKEDAGFFV 110 (292)
Q Consensus 93 ~~~l~i~~~~~~d~g~Y~ 110 (292)
+++|.|..+..+|.|+|.
T Consensus 104 NstL~i~~vn~sd~~nYc 121 (258)
T PHA03240 104 NSTLIIAHLNLSDAGEYC 121 (258)
T ss_pred cceEEEEEEeecCcchhh
Confidence 457888888888888874
No 426
>PHA02935 Hypothetical protein; Provisional
Probab=53.19 E-value=18 Score=26.13 Aligned_cols=60 Identities=15% Similarity=0.169 Sum_probs=33.6
Q ss_pred cccCCcCCCeeEEEEEEecccccccccEEEEEeCCCcEEe-CCCccEEec-CCcEEEEEEEeee
Q psy15128 2 ITEVKKSDEGKYQCYVQNMVGERETKPALLTVHAPPSFVV-RPQDQKVGL-NGIASFQCVAEGS 63 (292)
Q Consensus 2 i~~v~~~D~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~~~~-~~~~~~~~~-g~~~~l~C~~~~~ 63 (292)
|+.++-+|+|.|.-......|........+.|++ .+.. ..+...+.. -..+.++|....+
T Consensus 106 isslryedsgsykgvshlkdgvivtttmnisvka--niidltgrvryltrnycevkirceiksf 167 (349)
T PHA02935 106 ISSLRYEDSGSYKGVSHLKDGVIVTTTMNISVKA--NIIDLTGRVRYLTRNYCEVKIRCEIKSF 167 (349)
T ss_pred ccceeeccCCcccCchhhcCceEEEEEEEEEEEe--eeEeccceeeeeccccEEEEEEEEEeee
Confidence 5678889999998766555555444434444443 2222 222222222 2467888987653
No 427
>PF02480 Herpes_gE: Alphaherpesvirus glycoprotein E; InterPro: IPR003404 Glycoprotein E (gE) of Alphaherpesvirus forms a complex with glycoprotein I (gI), functioning as an immunoglobulin G (IgG) Fc binding protein. gE is involved in virus spread but is not essential for propagation [].; GO: 0016020 membrane; PDB: 2GJ7_F 2GIY_B.
Probab=52.64 E-value=13 Score=31.14 Aligned_cols=82 Identities=20% Similarity=0.318 Sum_probs=12.4
Q ss_pred ecEEEEccCCCCCCeEEEEEEEeCCcCee-EEEEEEEEeecCC---CCCe------------EEeCCCCceecCCCeEEE
Q psy15128 93 EGTLRIQGVQKEDAGFFVCSALSVAGSTT-VRAFLQVTSVEDT---PPPI------------VQVGPSNQTLPLHSVAFL 156 (292)
Q Consensus 93 ~~~l~i~~~~~~d~g~Y~C~~~~~~~~~~-~~~~l~v~~~~~~---~~~~------------~~~~~~~~~~~~g~~v~l 156 (292)
.+.|.|.+++.+|+|.|+-..++..+... ....|.|...... ++|. ....+......+|+++.|
T Consensus 88 ~~~l~i~~a~~~~~GvY~l~~~~~~~~~~~~~~~v~v~~~~~~~~~p~p~~p~~p~~~~~~~~~~~~~s~vf~~Gdtf~~ 167 (439)
T PF02480_consen 88 KGGLSILNATEQDSGVYTLYVRNDSGWAHQSVVFVTVKGPAPDPRTPPPHHPIVPHRHGATFHLKNYHSHVFSPGDTFHL 167 (439)
T ss_dssp ----------------------------------------------------------SEEEEEE--SEEE--TT--EE-
T ss_pred CCceEEeccccccCeeEEEEecCCCCceEEEEEEEEEcCCCcCCCCCCCCCCCCCcccccEEEEeccceEEecCCCcEEE
Confidence 45799999999999999998876554432 2233444332211 1121 111122233457888776
Q ss_pred EeEeccC--C--C--CceEEEeCC
Q psy15128 157 PCQAVGS--P--P--PHIRWYKNG 174 (292)
Q Consensus 157 ~C~~~~~--p--~--~~~~W~~~~ 174 (292)
.-..... . + ..+.|++-.
T Consensus 168 ~v~l~~~~~d~~~f~~~i~W~~~~ 191 (439)
T PF02480_consen 168 SVHLQSEAHDDPPFSLEIDWYYMP 191 (439)
T ss_dssp --EEEEEESSS--EEEEEEEEEE-
T ss_pred eEEEEeccCCCCCeeEEEEEEEec
Confidence 6655322 1 1 258898743
No 428
>PHA03112 IL-18 binding protein; Provisional
Probab=49.30 E-value=84 Score=21.57 Aligned_cols=26 Identities=15% Similarity=0.323 Sum_probs=19.5
Q ss_pred ecCCcEEEEEEEeee-CC-CeeEEEECC
Q psy15128 49 GLNGIASFQCVAEGS-PL-PSVFWTQEG 74 (292)
Q Consensus 49 ~~g~~~~l~C~~~~~-~~-~~v~W~~~~ 74 (292)
.+++.+.|.|.+-++ |. ..+.|..++
T Consensus 36 k~~~~vvL~C~gcs~fp~fS~lYWl~gn 63 (141)
T PHA03112 36 KETEKVVLECRGCSYFPKFSYVYWLIGN 63 (141)
T ss_pred CCCCEEEEEEECccCCCCceEEEEEcCC
Confidence 348899999999764 53 468899665
No 429
>PF06832 BiPBP_C: Penicillin-Binding Protein C-terminus Family; InterPro: IPR009647 This conserved region of approximately 90 residues is found in a sub-group of bacterial Penicillin-Binding Proteins (PBPs). A variable length loop region separates this region from the transpeptidase unit (IPR001460 from INTERPRO). It is predicted to be a beta fold.
Probab=48.83 E-value=62 Score=19.90 Aligned_cols=25 Identities=24% Similarity=0.448 Sum_probs=17.9
Q ss_pred eEEEEeEeccCCCCceEEEeCCeeCC
Q psy15128 153 VAFLPCQAVGSPPPHIRWYKNGNSLP 178 (292)
Q Consensus 153 ~v~l~C~~~~~p~~~~~W~~~~~~l~ 178 (292)
...|.+++.+. ...+.|+.||..+.
T Consensus 31 ~~~l~l~a~~~-~~~~~W~vdg~~~g 55 (89)
T PF06832_consen 31 RQPLVLKAAGG-RGPVYWFVDGEPLG 55 (89)
T ss_pred cceEEEEEeCC-CCcEEEEECCEEcc
Confidence 44555566555 44999999999983
No 430
>PHA03240 envelope glycoprotein M; Provisional
Probab=47.65 E-value=38 Score=24.90 Aligned_cols=71 Identities=14% Similarity=0.154 Sum_probs=38.4
Q ss_pred ceEEeCCCceEEEeeCCCCCCCCeEEEeE-------c-C---eEecc---CCCc---eEEec--CCCccccccccccccc
Q psy15128 207 DTRVASGETALLECGPPKGQPEPTLHWKK-------N-G---QFIDL---ESSK---RVSIL--GDPWFDSRRSRSIFGS 267 (292)
Q Consensus 207 ~~~~~~g~~~~l~C~~~~~~p~~~~~W~~-------~-g---~~~~~---~~~~---~~~~~--~~~~~~~~~~~~l~i~ 267 (292)
...+.+|+.|+|.-.- ...|--.+.|++ + | .++.. .... ..... +..........+|.|.
T Consensus 32 evt~r~G~nVTLga~~-~lhpgq~v~Wy~~~c~~~~G~G~~~~plC~Ytppk~~r~ktl~~t~~nt~i~y~C~NstL~i~ 110 (258)
T PHA03240 32 EHTTREGDPLLLGGGH-GLGAGQKAHWYKHKCDGITGNGDKLHPICTYDPPKNGKGKTLDESAENSFILYECHNSTLIIA 110 (258)
T ss_pred ecccccCCceeeCCcc-cCCCCCEEEEEeeecccccCCCCCCceeEEecCCccccccccccccCCCceEEEeccceEEEE
Confidence 4456788888887541 224556888988 1 1 22310 0000 11111 1111222444578888
Q ss_pred cccccccceeE
Q psy15128 268 VLGALSDDQWK 278 (292)
Q Consensus 268 ~~~~~~~g~y~ 278 (292)
.+...|.|+|.
T Consensus 111 ~vn~sd~~nYc 121 (258)
T PHA03240 111 HLNLSDAGEYC 121 (258)
T ss_pred EEeecCcchhh
Confidence 99999999984
No 431
>PHA03281 envelope glycoprotein E; Provisional
Probab=47.52 E-value=1.9e+02 Score=25.16 Aligned_cols=71 Identities=11% Similarity=0.113 Sum_probs=42.7
Q ss_pred cccCCcCCCeeEEEEEEecccccccccEEEEEeCCC-------cEE---------e-CCCccEEecCCcEEEEEEEeee-
Q psy15128 2 ITEVKKSDEGKYQCYVQNMVGERETKPALLTVHAPP-------SFV---------V-RPQDQKVGLNGIASFQCVAEGS- 63 (292)
Q Consensus 2 i~~v~~~D~G~Y~C~~~~~~~~~~~~~~~l~v~~~p-------~~~---------~-~~~~~~~~~g~~~~l~C~~~~~- 63 (292)
|.+++..++|.|+-..+...|...-..+.|.|+..+ .+. . .-......+|+++.+.-.....
T Consensus 302 I~nAT~~naGVYtly~rg~~G~s~~svfLVtVkg~~~~rip~p~Vtpk~hga~F~vknYhShVF~pGDTFsl~v~L~s~i 381 (642)
T PHA03281 302 FEHMEAHHAGVYIWNLQGSDGENMYATFLVKLKGDEENHIDLPAVTPKPKGAEFHMWHYHSHVFSVGDTFSLAMHLQYKI 381 (642)
T ss_pred EEecccccceeEEEEecCCCCcceeEEEEEEecCCcccCCCCCCccccccCceEEEeccceeEecCCCeeEEEEEEeeec
Confidence 678899999999988875444333323777776422 111 1 1122345678888777755432
Q ss_pred -C---CCeeEEEE
Q psy15128 64 -P---LPSVFWTQ 72 (292)
Q Consensus 64 -~---~~~v~W~~ 72 (292)
. ...+.|++
T Consensus 382 hD~pFsleI~Wyy 394 (642)
T PHA03281 382 HDAPFDLLLEWLY 394 (642)
T ss_pred cCCCceeEEEEEE
Confidence 1 23788986
No 432
>PF02440 Adeno_E3_CR1: Adenovirus E3 region protein CR1; InterPro: IPR003471 Early region 3 (E3) of human adenoviruses (Ads) codes for proteins that appear to control viral interactions with the host []. This region called CR1 (conserved region 1) [] is found three times in Human adenovirus 19 (a subgroup D virus) 49 Kd protein in the E3 region. CR1 is also found in the 20.1 Kd protein of subgroup B adenoviruses. The function of this 80 amino acid region is unknown. This region is probably a divergent immunoglobulin domain.
Probab=46.19 E-value=58 Score=18.77 Aligned_cols=52 Identities=21% Similarity=0.442 Sum_probs=27.4
Q ss_pred ecCCCeEEEEeEeccCCCCceEEEe---CC--eeCCCCCcc----EEEc-CCCcEEEEeeecCCCC
Q psy15128 148 LPLHSVAFLPCQAVGSPPPHIRWYK---NG--NSLPPEDTR----INVS-SSGSLQIDVLRDDFRA 203 (292)
Q Consensus 148 ~~~g~~v~l~C~~~~~p~~~~~W~~---~~--~~l~~~~~~----~~~~-~~~~l~i~~~~~~d~g 203 (292)
+..|+.++|. |.+...+.|++ ++ ..+-..... +... ....|+|-++...++|
T Consensus 2 v~~G~N~TL~----Gp~~~~V~Wy~~~~~~~~~~lC~g~~~~~~~l~~tCn~qNLTLinVt~~~~G 63 (63)
T PF02440_consen 2 VTVGSNVTLV----GPPDGPVTWYKFHSDGDFKKLCNGNKTKHPELNHTCNGQNLTLINVTKTYNG 63 (63)
T ss_pred EeEcCcEEEe----CCCCCceEEEEecCCCCccccCCCCCccccceEeEecCCeEEEEEecccccC
Confidence 3456666664 33445689983 22 223222211 1111 2346888888887765
No 433
>PF11049 KSHV_K1: Glycoprotein K1 of Kaposi's sarcoma-associated herpes virus; InterPro: IPR021022 This is a highly glycosylated cytoplasmic and membrane protein similar to the immunoglobulin receptor family that is expressed as an inducible early-lytic-cycle gene product in primary effusion lymphoma cell-lines. This domain would appear to be the cytoplasmic region of the protein [].
Probab=43.89 E-value=34 Score=19.71 Aligned_cols=21 Identities=24% Similarity=0.542 Sum_probs=14.6
Q ss_pred EEEeeCCCCCCCCeEEEeEcCeEe
Q psy15128 217 LLECGPPKGQPEPTLHWKKNGQFI 240 (292)
Q Consensus 217 ~l~C~~~~~~p~~~~~W~~~g~~~ 240 (292)
+|+|.. ... .-++|+-||..+
T Consensus 2 tltC~s-~~s--LPiswYcN~TRL 22 (71)
T PF11049_consen 2 TLTCPS-NAS--LPISWYCNGTRL 22 (71)
T ss_pred ceecCC-CCC--CcccEEECCcee
Confidence 578874 332 348899998776
No 434
>PF01688 Herpes_gI: Alphaherpesvirus glycoprotein I; InterPro: IPR002874 This family consists of glycoprotein I from various members of the alphaherpesvirinae. These include Human herpesvirus 1 (HHV-1), Human herpesvirus 3 (HHV-3) and Suid herpesvirus 1 (Pseudorabies virus). Glycoprotein I (gI) is important during natural infection, mutants lacking gI produce smaller lesions at the site of infection and show reduced neuronal spread []. gI forms a heterodimeric complex with gE; this complex displays Fc receptor activity (binds to the Fc region of immunoglobulin) []. Glycoproteins are also important in the production of virus-neutralizing antibodies and cell mediated immunity []. The alphaherpesviridae have a dsDNA genome and have no RNA stage during viral replication.; GO: 0033643 host cell part
Probab=43.69 E-value=89 Score=22.09 Aligned_cols=22 Identities=27% Similarity=0.397 Sum_probs=19.5
Q ss_pred EEEEccCCCCCCeEEEEEEEeC
Q psy15128 95 TLRIQGVQKEDAGFFVCSALSV 116 (292)
Q Consensus 95 ~l~i~~~~~~d~g~Y~C~~~~~ 116 (292)
.|+|.+.+.+|+|.|.-++.-.
T Consensus 125 lL~i~~p~~~dsG~Y~lRV~l~ 146 (161)
T PF01688_consen 125 LLRIRNPRPEDSGIYYLRVWLD 146 (161)
T ss_pred EEEeCCCCcccceEEEEEEEEC
Confidence 5999999999999999988744
No 435
>PF03921 ICAM_N: Intercellular adhesion molecule (ICAM), N-terminal domain; InterPro: IPR013768 Intercellular adhesion molecules (ICAMs) and vascular cell adhesion molecule-1 (VCAM-1) are part of the immunoglobulin superfamily. They are important in inflammation, immune responses and in intracellular signalling events []. The ICAM family consists of five members, designated ICAM-1 to ICAM-5. They are known to bind to leucocyte integrins CD11/CD18 during inflammation and in immune responses. In addition, ICAMs may exist in soluble forms in human plasma, due to activation and proteolysis mechanisms at cell surfaces. ICAM-1 (CD54) contains five Ig-like domains. It is expressed on leucocytes, endothelial and epithelial cells, and is upregulated in response to bacterial invasion. The protein is a ligand for lymphocyte-function associated (LFA) antigens and also a receptor for CD11a,b/CD18, fibrinogen, human rhinovirus and Plasmodium falciparum-infected erythrocytes. ICAM-1 binding sites for CD11a/CD18 and its other binding partners are located in the first domain and are overlapping. ICAM-1 domain 2 seems to play an important role in maintaining the conformation of domain 1 and particularly the structural integrity of the LFA-1 ligand-binding site []. The 3-dimensional atomic structure of the tandem N-terminal Ig-like domains (D1 and D2) of ICAM-1 has been determined to 2.2A resolution and fitted into a cryoelectron microscopy reconstruction of a rhinovirus-ICAM-1 complex []. Extensive charge interactions between ICAM-1 and human rhinovirusesare largely conserved in major and minor receptor groups of rhinoviruses. The interaction of ICAMs with LFA-1 is mediated by a divalent cation bound to the insertion (I)-domain on the alpha chain of LFA-1 and the carboxyl group of a conserved glutamic acid residue on ICAMs. ICAM-2 (CD102) has two Ig-like domains. It is expressed on endothelial cells, leucocytes and platelets, and binds to CD11a'b/CD18. The protein is refractory to proinflammatory cytokines, and plays an important role in the adhesion of leucocytes to the uninduced endothelium []. ICAM-3 (CD50) contains five Ig-like domains and binds to leucocyte integrins CD11a'd/CD18. The protein plays an important role in the immune response and perhaps in signal transduction []. ICAM-4 (LW blood group Ag) is red blood cell (RBC) specific and binds to CD11a'b/CD18. It is associated with the RBC Rh antigens and could be important in retaining immature red cells in the bone marrow, or in the uptake of senescent cells into the spleen []. ICAM-5 (telencephalin) has nine Ig-like domains and is confined to the telencephalon of the brain. The role of this CD11a/CD18 binding molecule is not yet known []. VCAM-1 was first described as a cytokine-inducible endothelial adhesion molecule. It can bind to leucocyte integrin VL-4 (very late antigen-4) to recruit leucocytes to sites of inflammation []. The predominant form of VCAM-1 in vivo has an N-terminal extracellular region comprising seven Ig-like domains []. A conserved integrin-binding motif has been identified in domains 1 and 4, variants of which are present in the N-terminal domain of all members of the integrin-binding subgroup of the immunoglobulin superfamily. The structure of a VLA-4-binding fragment comprising the first two domains of VCAM-1 has been determined to 1.8A resolution. The integrin-binding motif is exposed and forms the N-terminal region of the loop between beta-strands C and D of domain 1 []. VCAM-1 domains 1 and 2 are structurally similar to ICAM-1 and ICAM-2 []. This entry represents the N-terminal domain of ICAM proteins such as ICAM-2, ICAM-3 and ICAM-4.; PDB: 3BN3_B 1T0P_B 1ZXQ_A 3TCX_A 1MQ8_A 1Z7Z_I 1IC1_A 1IAM_A.
Probab=43.29 E-value=53 Score=20.60 Aligned_cols=31 Identities=26% Similarity=0.582 Sum_probs=20.9
Q ss_pred EEeCCCCceecCCCeEEEEeEeccCCCC-ceEE
Q psy15128 139 VQVGPSNQTLPLHSVAFLPCQAVGSPPP-HIRW 170 (292)
Q Consensus 139 ~~~~~~~~~~~~g~~v~l~C~~~~~p~~-~~~W 170 (292)
+.+.|....+..|+++.+.|...- +.| .+.|
T Consensus 6 v~v~P~~~vV~~G~Sv~VNCStsC-~~p~~~GL 37 (91)
T PF03921_consen 6 VRVSPEEPVVPPGGSVWVNCSTSC-PQPEKIGL 37 (91)
T ss_dssp EEEESSEEEEETTEEEEEEEEESS-SS-SEEEE
T ss_pred EEEECCccEECCCCCEEEEEcCCC-CCCCcceE
Confidence 344566677889999999999743 344 3444
No 436
>KOG0200|consensus
Probab=42.71 E-value=1.5e+02 Score=26.45 Aligned_cols=22 Identities=23% Similarity=0.261 Sum_probs=18.6
Q ss_pred cEEEEccCCCCCCeEEEEEEEe
Q psy15128 94 GTLRIQGVQKEDAGFFVCSALS 115 (292)
Q Consensus 94 ~~l~i~~~~~~d~g~Y~C~~~~ 115 (292)
..+.+.++...+.+.|.|....
T Consensus 117 ~~~~~~n~~~~~~~~~~~~~~~ 138 (609)
T KOG0200|consen 117 ESGLIYNVSLTEAGEYLCWTGR 138 (609)
T ss_pred EeeeeeccChhhcceeeccCCC
Confidence 3678889999999999998765
No 437
>PRK14081 triple tyrosine motif-containing protein; Provisional
Probab=41.37 E-value=2.7e+02 Score=25.16 Aligned_cols=159 Identities=12% Similarity=0.085 Sum_probs=84.1
Q ss_pred CcCCCeeEEEEEEecccc----cc-cccEEEEEeCC---CcEE---eCCCccEEecCCcEEEEEEEeeeCCCeeE-E-EE
Q psy15128 6 KKSDEGKYQCYVQNMVGE----RE-TKPALLTVHAP---PSFV---VRPQDQKVGLNGIASFQCVAEGSPLPSVF-W-TQ 72 (292)
Q Consensus 6 ~~~D~G~Y~C~~~~~~~~----~~-~~~~~l~v~~~---p~~~---~~~~~~~~~~g~~~~l~C~~~~~~~~~v~-W-~~ 72 (292)
++..+|.|.-.+.-.... .. ...+...+... |..+ +.+.......|+.+.+.|.+.+.....+. | .+
T Consensus 345 ~P~~~G~Y~I~v~VKDk~S~~eyD~~~~v~f~i~~~~~~p~~I~~vl~d~~~~~lvG~~i~i~v~a~gg~~~lY~f~ik~ 424 (667)
T PRK14081 345 KPKIAGKYSITLWVKDISSKGEYEDKSSIDYTIEEKSKEPIKIEDVILDKGKHILKGEEIKIRVIAEGGTNLRYSFIIKK 424 (667)
T ss_pred eeCCCceEEEEEEEEcCcCcccccceEEEEEEEcccCCCCeEEEEEEECCCCceEeCCeEEEEEEecCCCeEEEEEEEEE
Confidence 566788888776543211 11 12144555443 3211 23334567789999999999775433333 3 34
Q ss_pred CCeEEeeccCCCcceeEEeeecEEEEccCCCCCCeEEEEEEEeCCc------CeeEEEEEEEEeecCCCC-CeEEeCCCC
Q psy15128 73 EGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAG------STTVRAFLQVTSVEDTPP-PIVQVGPSN 145 (292)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~~------~~~~~~~l~v~~~~~~~~-~~~~~~~~~ 145 (292)
+|..+.. .....+..+.+ .+.-+|.|+-.++-... .....+.+.|.. ..|. ....+.+..
T Consensus 425 ng~~ve~--------~~Y~~~~~~~f---~P~~~G~Y~IeV~vKdk~S~~~yD~~k~v~l~V~e--~~P~~i~~il~~~~ 491 (667)
T PRK14081 425 DGKEEEK--------IDYGKNNWVNF---IPEEKGNYELEVRVKDKYSDKEYDAHTIVYIKVHE--YIPAEIDYILLPVK 491 (667)
T ss_pred CCEEEEE--------eecccccEEEE---EECCCeeEEEEEEEecccCchhcccceEEEEEEec--cCceeeeeEEeccc
Confidence 5554421 11122233433 34678999987763222 123344444432 1222 122234555
Q ss_pred ceecCCCeEEEEeEeccCCCCceE--EEeCCeeC
Q psy15128 146 QTLPLHSVAFLPCQAVGSPPPHIR--WYKNGNSL 177 (292)
Q Consensus 146 ~~~~~g~~v~l~C~~~~~p~~~~~--W~~~~~~l 177 (292)
.....|+.+++.|.+.+.....+. -+.+|...
T Consensus 492 ~~~~vg~~i~~~~~~~~~k~v~y~y~~~~NG~~v 525 (667)
T PRK14081 492 EYYLVGDDIEIEVIIQNTKDVLIKYILKINGHKV 525 (667)
T ss_pred ccEEeCCEEEEEEEEeCCCeEEEEEEEEECCEEE
Confidence 567889999999998765444333 33455544
No 438
>PF13220 DUF4028: Protein of unknown function (DUF4028)
Probab=40.87 E-value=23 Score=19.16 Aligned_cols=17 Identities=18% Similarity=0.161 Sum_probs=13.4
Q ss_pred cccceeEEEEeeccccc
Q psy15128 272 LSDDQWKLIAKNIRNQQ 288 (292)
Q Consensus 272 ~~~g~y~C~a~n~~g~~ 288 (292)
..+..|.|+++|.-|.+
T Consensus 8 dssnsflctvqnkng~~ 24 (65)
T PF13220_consen 8 DSSNSFLCTVQNKNGDQ 24 (65)
T ss_pred cCCCceEEEEecccHhH
Confidence 34567999999998864
No 439
>PF10430 Ig_Tie2_1: Tie-2 Ig-like domain 1; InterPro: IPR018941 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. Tyrosine-protein kinases can transfer a phosphate group from ATP to a tyrosine residue in a protein. These enzymes can be divided into two main groups []: Receptor tyrosine kinases (RTK), which are transmembrane proteins involved in signal transduction; they play key roles in growth, differentiation, metabolism, adhesion, motility, death and oncogenesis []. RTKs are composed of 3 domains: an extracellular domain (binds ligand), a transmembrane (TM) domain, and an intracellular catalytic domain (phosphorylates substrate). The TM domain plays an important role in the dimerisation process necessary for signal transduction []. Cytoplasmic / non-receptor tyrosine kinases, which act as regulatory proteins, playing key roles in cell differentiation, motility, proliferation, and survival. For example, the Src-family of protein-tyrosine kinases []. Angiogenesis is a physiological process whereby new blood vessels are formed from existing ones. It is essential for tissue repair and regeneration during wound healing but also plays important roles in many pathological processes including tumor growth and metastasis [, ]. Angiogenesis is regulated in part by the receptor protein tyrosine kinase Tie2 and its ligands, the angiopoietins. The angiopoietin-binding site is harbord by the N-terminal two immunoglobulin-like (Ig-like) domains of Tie2 []. The angiopoietin-1 receptor contains the Tie-2 Ig-like domain. This protein is a tyrosine-kinase transmembrane receptor for angiopoietin 1. It probably regulates endothelial cell proliferation, differentiation and guides the proper patterning of endothelial cells during blood vessel formation. Tie2 contains not two but three immunoglobulin domains. They fold together with the three epidermal growth factor domains to form a compact, arrowhead-shaped structure [].; GO: 0004714 transmembrane receptor protein tyrosine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation, 0007169 transmembrane receptor protein tyrosine kinase signaling pathway, 0005887 integral to plasma membrane; PDB: 2GY7_B 2GY5_A.
Probab=39.32 E-value=72 Score=19.76 Aligned_cols=24 Identities=8% Similarity=0.191 Sum_probs=11.0
Q ss_pred CCceEEEeeCCCCCCCCeEEEeEc
Q psy15128 213 GETALLECGPPKGQPEPTLHWKKN 236 (292)
Q Consensus 213 g~~~~l~C~~~~~~p~~~~~W~~~ 236 (292)
.....|.|.++...+...+.--++
T Consensus 15 ~~etSL~Ci~s~W~s~esitigrd 38 (96)
T PF10430_consen 15 NSETSLTCIASDWSSHESITIGRD 38 (96)
T ss_dssp SS-EEEEEEE-SS--SS--EEEE-
T ss_pred cCceeEEEEecCCcCCCcEEeccc
Confidence 344588898755565556655443
No 440
>KOG1026|consensus
Probab=36.19 E-value=80 Score=28.71 Aligned_cols=73 Identities=16% Similarity=0.260 Sum_probs=44.2
Q ss_pred ccEEecCCcEEEEEEEeeeCCCeeEEEECCeEEeeccCCCcceeEEeeecEEEEccCCCCCCeEEEEEEEeCCcCeeEEE
Q psy15128 45 DQKVGLNGIASFQCVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRA 124 (292)
Q Consensus 45 ~~~~~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~~~~~~~~~~~ 124 (292)
...+..+..+++.|...+.|.+...|+..+...... ........ +....+.+ +.|.+.+..+.....+
T Consensus 201 ~~~v~~~~~~~~~c~~~~~~vp~~~~~~~~~~~~~~--~~~~~~c~--~~~~~~~~--------~~c~~E~~~~~~~~~v 268 (774)
T KOG1026|consen 201 NLTVEEGSSITLKCSQAGIPVPCHYWFPNCLASSNT--NQTSSLCR--SECEVLEN--------DLCIAENAVARSNPSI 268 (774)
T ss_pred hhhhcccchheeeeecccCCCcceeeecccccccCC--Cccccccc--ccceeeec--------hhhHHHHhhhhcCcee
Confidence 455677899999999999999999998766433211 11111111 11111111 7899888877766665
Q ss_pred EEEEE
Q psy15128 125 FLQVT 129 (292)
Q Consensus 125 ~l~v~ 129 (292)
.+.+.
T Consensus 269 ~~~~~ 273 (774)
T KOG1026|consen 269 LLVVD 273 (774)
T ss_pred eeEEe
Confidence 55554
No 441
>PF05955 Herpes_gp2: Equine herpesvirus glycoprotein gp2; InterPro: IPR010278 This entry consists of a number of glycoprotein Gp2 sequences mainly found from equine herpesviruses [].; GO: 0016032 viral reproduction, 0016021 integral to membrane
Probab=32.96 E-value=1.1e+02 Score=21.81 Aligned_cols=65 Identities=8% Similarity=0.077 Sum_probs=33.3
Q ss_pred EeeCCCCCCCCeEEEeEcCeEeccCCCceE--EecCCCccccccccccccccccccccceeEEEEeecc
Q psy15128 219 ECGPPKGQPEPTLHWKKNGQFIDLESSKRV--SILGDPWFDSRRSRSIFGSVLGALSDDQWKLIAKNIR 285 (292)
Q Consensus 219 ~C~~~~~~p~~~~~W~~~g~~~~~~~~~~~--~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~a~n~~ 285 (292)
.|.+..-..+|.|+|......|..+.-... .+... .-..-.+.+.+....-.++-.|.|.+.-.-
T Consensus 113 vCitseL~s~PtitWsVgs~rl~n~gftqtwy~iqPG--vCgilrS~v~~~R~~G~~~~~y~c~~~~~D 179 (226)
T PF05955_consen 113 VCITSELVSQPTITWSVGSDRLRNDGFTQTWYGIQPG--VCGILRSEVRIPRAEGRDNVDYLCEIRALD 179 (226)
T ss_pred EEeeccccCCCeEEEEeccceeecCCccceeecccCc--ceeeEeeeeecccCCCCCcccEEecccccc
Confidence 377644566789999987766642221111 11111 000011123445555556668999886443
No 442
>PHA03290 envelope glycoprotein I; Provisional
Probab=29.30 E-value=1.2e+02 Score=24.39 Aligned_cols=20 Identities=30% Similarity=0.217 Sum_probs=16.6
Q ss_pred cccCCcCCCeeEEEEEEecc
Q psy15128 2 ITEVKKSDEGKYQCYVQNMV 21 (292)
Q Consensus 2 i~~v~~~D~G~Y~C~~~~~~ 21 (292)
|.+.+++|+|.|.-.+.-..
T Consensus 133 I~~P~~~DSGiY~LRV~Ldg 152 (357)
T PHA03290 133 INKPGIEDAGIYLLLVQLDH 152 (357)
T ss_pred eCCCCcccCeeEEEEEEeCC
Confidence 67889999999999887643
No 443
>PHA03282 envelope glycoprotein E; Provisional
Probab=26.99 E-value=1.3e+02 Score=25.43 Aligned_cols=23 Identities=30% Similarity=0.569 Sum_probs=20.1
Q ss_pred ecEEEEccCCCCCCeEEEEEEEe
Q psy15128 93 EGTLRIQGVQKEDAGFFVCSALS 115 (292)
Q Consensus 93 ~~~l~i~~~~~~d~g~Y~C~~~~ 115 (292)
+.+|.|.+++.+|+|.|+..+..
T Consensus 123 n~tl~l~~a~~~DsG~Y~L~~~~ 145 (540)
T PHA03282 123 NGTLVLREARETDSGMYVLSVSR 145 (540)
T ss_pred cceEEEeeccccCCceEEEEecC
Confidence 66799999999999999988643
No 444
>PHA03289 envelope glycoprotein I; Provisional
Probab=24.97 E-value=1.5e+02 Score=23.61 Aligned_cols=20 Identities=35% Similarity=0.295 Sum_probs=16.1
Q ss_pred cccCCcCCCeeEEEEEEecc
Q psy15128 2 ITEVKKSDEGKYQCYVQNMV 21 (292)
Q Consensus 2 i~~v~~~D~G~Y~C~~~~~~ 21 (292)
|.+.+++|+|.|.-.+.-..
T Consensus 126 I~~Pr~~DSGiYyLRV~Ldg 145 (352)
T PHA03289 126 IIEPRMSDTGIYYIRVSLAG 145 (352)
T ss_pred eCCCCcccCeeEEEEEEeCC
Confidence 56788999999998887543
No 445
>PHA03292 envelope glycoprotein I; Provisional
Probab=21.86 E-value=1.7e+02 Score=23.94 Aligned_cols=31 Identities=23% Similarity=0.147 Sum_probs=0.0
Q ss_pred cccCCcCCCeeEEEEEEecccccccccEEEEE
Q psy15128 2 ITEVKKSDEGKYQCYVQNMVGERETKPALLTV 33 (292)
Q Consensus 2 i~~v~~~D~G~Y~C~~~~~~~~~~~~~~~l~v 33 (292)
|.+.+++|+|.|.-.+.........- +.|.+
T Consensus 132 I~~P~~~DSGiY~LRV~Ldga~~aDv-F~lsv 162 (413)
T PHA03292 132 ITGPQPADSGAYILRVKLDHAPTADV-FGLSA 162 (413)
T ss_pred eCCCCcccceeEEEEEEeCCCccCce-eEEEE
No 446
>PHA03290 envelope glycoprotein I; Provisional
Probab=21.19 E-value=3.5e+02 Score=21.88 Aligned_cols=23 Identities=22% Similarity=0.196 Sum_probs=20.1
Q ss_pred cEEEEccCCCCCCeEEEEEEEeC
Q psy15128 94 GTLRIQGVQKEDAGFFVCSALSV 116 (292)
Q Consensus 94 ~~l~i~~~~~~d~g~Y~C~~~~~ 116 (292)
-.|+|.+...+|+|.|.-++.-.
T Consensus 129 vLL~I~~P~~~DSGiY~LRV~Ld 151 (357)
T PHA03290 129 IIFKINKPGIEDAGIYLLLVQLD 151 (357)
T ss_pred eEEEeCCCCcccCeeEEEEEEeC
Confidence 36999999999999999998754
No 447
>PHA03289 envelope glycoprotein I; Provisional
Probab=21.02 E-value=3.4e+02 Score=21.79 Aligned_cols=24 Identities=17% Similarity=0.188 Sum_probs=20.5
Q ss_pred EEEEccCCCCCCeEEEEEEEeCCc
Q psy15128 95 TLRIQGVQKEDAGFFVCSALSVAG 118 (292)
Q Consensus 95 ~l~i~~~~~~d~g~Y~C~~~~~~~ 118 (292)
-|+|.+..++|+|.|.-++.-...
T Consensus 123 LL~I~~Pr~~DSGiYyLRV~Ldga 146 (352)
T PHA03289 123 LLTIIEPRMSDTGIYYIRVSLAGR 146 (352)
T ss_pred EEEeCCCCcccCeeEEEEEEeCCC
Confidence 699999999999999999875433
No 448
>COG5475 Uncharacterized small protein [Function unknown]
Probab=20.07 E-value=1.2e+02 Score=16.92 Aligned_cols=14 Identities=29% Similarity=0.577 Sum_probs=11.5
Q ss_pred eeEEEEEEeccccc
Q psy15128 11 GKYQCYVQNMVGER 24 (292)
Q Consensus 11 G~Y~C~~~~~~~~~ 24 (292)
|.|.|..-+..+..
T Consensus 29 Gmy~C~Wf~g~g~~ 42 (60)
T COG5475 29 GMYECRWFDGYGVK 42 (60)
T ss_pred CeEEEEEecCCCcc
Confidence 99999998877643
Done!