RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy15128
(292 letters)
>3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin
superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus
norvegicus}
Length = 403
Score = 208 bits (531), Expect = 4e-65
Identities = 64/285 (22%), Positives = 103/285 (36%), Gaps = 37/285 (12%)
Query: 1 MITEVKKSDEGKYQCYVQ-NMVGERETKPALLTVHAPPSFVVRPQDQKVGLNGIASFQCV 59
+ + K DEG YQC G ++ A + V P F+ + + + +C
Sbjct: 85 LHSRHHKPDEGLYQCEASLGDSGSIISRTAKVMVAGPLRFLSQTESITAFMGDTVLLKCE 144
Query: 60 AEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGS 119
G P+P++ W + + PG+ + V G L+I +Q D+G + CSA + A +
Sbjct: 145 VIGDPMPTIHWQKNQQDLNPIPGD--SRVVVLPSGALQISRLQPGDSGVYRCSARNPAST 202
Query: 120 TTVR-AFLQVTSV-EDTPPPIVQVGPSNQTLPLHSVAFLPCQAVGSPPPHIRWYKNGNSL 177
T A +++ S PSN A L C G PPP W + +
Sbjct: 203 RTGNEAEVRILSDPGLHRQLYFLQRPSNVIAIEGKDAVLECCVSGYPPPSFTWLRGEEVI 262
Query: 178 PPEDTRINVSSSGSLQI-DVLRDD----------------------------FRAEPKDT 208
+ ++ +L I +V DD F P +
Sbjct: 263 QLRSKKYSLLGGSNLLISNVTDDDSGTYTCVVTYKNENISASAELTVLVPPWFLNHPSNL 322
Query: 209 RVASGETALLECGPPKGQPEPTLHWKKNGQFIDLESSKRVSILGD 253
EC G+P PT++W KNG + S I+G
Sbjct: 323 YAYESMDIEFECA-VSGKPVPTVNWMKNGD--VVIPSDYFQIVGG 364
Score = 179 bits (455), Expect = 6e-54
Identities = 47/207 (22%), Positives = 75/207 (36%), Gaps = 17/207 (8%)
Query: 1 MITEVKKSDEGKYQCYVQNMVGERETKPALLTVHAPPS------FVVRPQDQKVGLNGIA 54
I+ ++ D G Y+C +N R A + + + P F+ RP + A
Sbjct: 180 QISRLQPGDSGVYRCSARNPASTRTGNEAEVRILSDPGLHRQLYFLQRPSNVIAIEGKDA 239
Query: 55 SFQCVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSAL 114
+C G P PS W + + + + L I V +D+G + C
Sbjct: 240 VLECCVSGYPPPSFTWLRGEEVIQLRSK----KYSLLGGSNLLISNVTDDDSGTYTCVVT 295
Query: 115 SVAGSTTVRAFLQVTSVEDTPPPIVQVGPSNQTLPLHSVAFLPCQAVGSPPPHIRWYKNG 174
+ + A L V PP PSN C G P P + W KNG
Sbjct: 296 YKNENISASAELTVLV-----PPWFLNHPSNLYAYESMDIEFECAVSGKPVPTVNWMKNG 350
Query: 175 NSLPPEDTRINVSSSGSLQI-DVLRDD 200
+ + P D + +L+I V++ D
Sbjct: 351 DVVIPSD-YFQIVGGSNLRILGVVKSD 376
Score = 154 bits (390), Expect = 3e-44
Identities = 61/279 (21%), Positives = 90/279 (32%), Gaps = 53/279 (18%)
Query: 19 NMVGERETKPALLTVHAPPSFVVRPQDQKVGLNGIASFQCVAEGS-PLPSVFWTQEGSQV 77
+ + FV P D G C AE +P + W ++G +
Sbjct: 5 SELESSHHH-HHHGGRRSLHFVSEPSDAVTMRGGNVLLNCSAESDRGVPVIKWKKDGLIL 63
Query: 78 LMFPGNAYGHLHVTQEGTLRIQGV-----QKEDAGFFVCSALSVAGSTTVRAFLQVTSVE 132
G+L IQ + K D G + C A + + +V
Sbjct: 64 ---ALGMDDRKQQLPNGSLLIQNILHSRHHKPDEGLYQCEASLGDSGSIISRTAKVMVAG 120
Query: 133 DTPPPIVQVGPSNQTLPLHSVAFLPCQAVGSPPPHIRWYKNGNSLP--PEDTRINVSSSG 190
P + T + L C+ +G P P I W KN L P D+R+ V SG
Sbjct: 121 ---PLRFLSQTESITAFMGDTVLLKCEVIGDPMPTIHWQKNQQDLNPIPGDSRVVVLPSG 177
Query: 191 SLQI-DVLRDD-----------------------------------FRAEPKDTRVASGE 214
+LQI + D F P + G+
Sbjct: 178 ALQISRLQPGDSGVYRCSARNPASTRTGNEAEVRILSDPGLHRQLYFLQRPSNVIAIEGK 237
Query: 215 TALLECGPPKGQPEPTLHWKKNGQFIDLESSKRVSILGD 253
A+LEC G P P+ W + + I L SK+ S+LG
Sbjct: 238 DAVLEC-CVSGYPPPSFTWLRGEEVIQL-RSKKYSLLGG 274
Score = 128 bits (323), Expect = 1e-34
Identities = 40/129 (31%), Positives = 55/129 (42%), Gaps = 6/129 (4%)
Query: 1 MITEVKKSDEGKYQCYVQNMVGERETKPALLTVHAPPSFVVRPQDQKVGLNGIASFQCVA 60
+I+ V D G Y C V A LTV PP F+ P + + F+C
Sbjct: 278 LISNVTDDDSGTYTCVVTYKNENISAS-AELTVLVPPWFLNHPSNLYAYESMDIEFECAV 336
Query: 61 EGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGST 120
G P+P+V W + G V+ + + LRI GV K D GF+ C A + AG+
Sbjct: 337 SGKPVPTVNWMKNGDVVI-----PSDYFQIVGGSNLRILGVVKSDEGFYQCVAENEAGNA 391
Query: 121 TVRAFLQVT 129
A L V
Sbjct: 392 QSSAQLIVP 400
>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL
structural protein; 3.30A {Oryctolagus cuniculus}
Length = 570
Score = 211 bits (539), Expect = 1e-64
Identities = 61/279 (21%), Positives = 105/279 (37%), Gaps = 43/279 (15%)
Query: 2 ITEVKKSDEGKYQCYVQNMVGERETKPALLTVHAPPSFVVRPQD-QKVGLNGIASFQCVA 60
+ +V K D G+Y CY N+ G+ A L V PP F+ + + + V + ++C
Sbjct: 257 VLKVTKGDAGQYTCYASNVAGKDSCS-AQLGVQEPPRFIKKLEPSRIVKQDEHTRYECKI 315
Query: 61 EGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGST 120
GSP V W ++ ++ + + + V L + + ED+G + C A + AGS
Sbjct: 316 GGSPEIKVLWYKDETE--IQESSKFRMSFVESVAVLEMYNLSVEDSGDYTCEAHNAAGSA 373
Query: 121 TVRAFLQVTSVEDTPPPIVQVGPSNQTLPLHSVAFLPCQAVGSPPPHIRWYKNGNSLPPE 180
+ L+V PP+ + P + L C+ G+PP + W+K+ L
Sbjct: 374 SSSTSLKVKE-----PPVFRKKPHPVETLKGADVHLECELQGTPPFQVSWHKDKREL-RS 427
Query: 181 DTRINVSSSG---SLQI-DVLRDD----------------------------FRAEPKDT 208
+ + S S+ I +V D F + D
Sbjct: 428 GKKYKIMSENFLTSIHILNVDSADIGEYQCKASNDVGSDTCVGSITLKAPPRFVKKLSDI 487
Query: 209 RVASGETALLECGPPKGQPEPTLHWKKNGQFIDLESSKR 247
GE L+ +G ++ W K+ I ES
Sbjct: 488 STVVGEEVQLQAT-IEGAEPISVAWFKDKGEIVRESDNI 525
Score = 199 bits (507), Expect = 5e-60
Identities = 66/287 (22%), Positives = 109/287 (37%), Gaps = 44/287 (15%)
Query: 1 MITEVKKSDEGKYQCYVQNMVGERETKPALLTV---HAPPSFVVRPQDQKVGLNGIASFQ 57
I + +S G+Y C N +G + A LT+ PP F ++P + L +F+
Sbjct: 160 QILQTDQSHVGQYNCSASNPLGTASS-SAKLTLSEHEVPPFFDLKPVSVDLALGESGTFK 218
Query: 58 CVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVA 117
C G+ + W ++ + PG Y V TL + V K DAG + C A +VA
Sbjct: 219 CHVTGTAPIKITWAKDN--REIRPGGNYKMTLVENTATLTVLKVTKGDAGQYTCYASNVA 276
Query: 118 GSTTVRAFLQVTSVEDTPPPIVQVGPSNQTLPLHSVAFLPCQAVGSPPPHIRWYKNGNSL 177
G + A L V PP ++ ++ + C+ GSP + WYK+ +
Sbjct: 277 GKDSCSAQLGVQE----PPRFIKKLEPSRIVKQDEHTRYECKIGGSPEIKVLWYKDETEI 332
Query: 178 PPED--TRINVSSSGSLQI-DVLRDD----------------------------FRAEPK 206
V S L++ ++ +D FR +P
Sbjct: 333 QESSKFRMSFVESVAVLEMYNLSVEDSGDYTCEAHNAAGSASSSTSLKVKEPPVFRKKPH 392
Query: 207 DTRVASGETALLECGPPKGQPEPTLHWKKNGQFIDLESSKRVSILGD 253
G LEC +G P + W K+ + +L S K+ I+ +
Sbjct: 393 PVETLKGADVHLEC-ELQGTPPFQVSWHKDKR--ELRSGKKYKIMSE 436
Score = 177 bits (451), Expect = 7e-52
Identities = 66/288 (22%), Positives = 107/288 (37%), Gaps = 41/288 (14%)
Query: 1 MITEVKKSDEGKYQCYVQNMVGERETKPALLTVHA---PPSFVVRPQDQKVGLNGIASFQ 57
+I +V SD G+Y C +N VG + A+L + PPSF + +D L +F+
Sbjct: 64 VINKVDHSDVGEYTCKAENSVGAVASS-AVLVIKERKLPPSFARKLKDVHETLGFPVAFE 122
Query: 58 CVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVA 117
C GS V W ++G + + TL+I + G + CSA +
Sbjct: 123 CRINGSEPLQVSWYKDGELL--KDDANLQTSFIHNVATLQILQTDQSHVGQYNCSASNPL 180
Query: 118 GSTTVRAFLQVTSVEDTPPPIVQVGPSNQTLPLHSVAFLPCQAVGSPPPHIRWYKNGNSL 177
G+ + A L ++ E PP + P + L L C G+ P I W K+ +
Sbjct: 181 GTASSSAKLTLS--EHEVPPFFDLKPVSVDLALGESGTFKCHVTGTAPIKITWAKDNREI 238
Query: 178 PPEDTR--INVSSSGSLQI-DVLRDD----------------------------FRAEPK 206
P V ++ +L + V + D F + +
Sbjct: 239 RPGGNYKMTLVENTATLTVLKVTKGDAGQYTCYASNVAGKDSCSAQLGVQEPPRFIKKLE 298
Query: 207 DTRVAS-GETALLECGPPKGQPEPTLHWKKNGQFIDLESSKRVSILGD 253
+R+ E EC G PE + W K+ I S R+S +
Sbjct: 299 PSRIVKQDEHTRYEC-KIGGSPEIKVLWYKDETEIQESSKFRMSFVES 345
Score = 168 bits (427), Expect = 2e-48
Identities = 41/203 (20%), Positives = 73/203 (35%), Gaps = 12/203 (5%)
Query: 2 ITEVKKSDEGKYQCYVQNMVGERETKPALLTVHAPPSFVVRPQDQKVGLNGIASFQCVAE 61
+ + D G Y C N G + L V PP F +P + +C +
Sbjct: 351 MYNLSVEDSGDYTCEAHNAAGSASSS-TSLKVKEPPVFRKKPHPVETLKGADVHLECELQ 409
Query: 62 GSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTT 121
G+P V W ++ ++ G Y + ++ I V D G + C A + GS T
Sbjct: 410 GTPPFQVSWHKDKRELR--SGKKYKIMSENFLTSIHILNVDSADIGEYQCKASNDVGSDT 467
Query: 122 VRAFLQVTSVEDTPPPIVQVGPSNQTLPLHSVAFLPCQAVGSPPPHIRWYKNGNSLPPED 181
+ + + PP S+ + + L G+ P + W+K+ + E
Sbjct: 468 CVGSITLKA-----PPRFVKKLSDISTVVGEEVQLQATIEGAEPISVAWFKDKGEIVRES 522
Query: 182 TRINVS---SSGSLQI-DVLRDD 200
I +S + +LQ +
Sbjct: 523 DNIWISYSENIATLQFSRAEPAN 545
Score = 154 bits (392), Expect = 2e-43
Identities = 46/254 (18%), Positives = 82/254 (32%), Gaps = 41/254 (16%)
Query: 36 PPSFVVRPQDQKVGLNGIASFQCVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGT 95
PP F+ + + + + QC +G+P + W +E +++ AY +
Sbjct: 5 PPYFIEPLEHVEAAIGEPITLQCKVDGTPEIRIAWYKEHTKL--RSAPAYKMQFKNNVAS 62
Query: 96 LRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVTSVEDTPPPIVQVGPSNQTLPLHSVAF 155
L I V D G + C A + G+ A L + E PP + L
Sbjct: 63 LVINKVDHSDVGEYTCKAENSVGAVASSAVLVIK--ERKLPPSFARKLKDVHETLGFPVA 120
Query: 156 LPCQAVGSPPPHIRWYKNGNSLPP-EDTRINVSS-SGSLQI-DVLRDD------------ 200
C+ GS P + WYK+G L + + + +LQI +
Sbjct: 121 FECRINGSEPLQVSWYKDGELLKDDANLQTSFIHNVATLQILQTDQSHVGQYNCSASNPL 180
Query: 201 -------------------FRAEPKDTRVASGETALLECGPPKGQPEPTLHWKKNGQFID 241
F +P +A GE+ +C G + W K+ + +
Sbjct: 181 GTASSSAKLTLSEHEVPPFFDLKPVSVDLALGESGTFKC-HVTGTAPIKITWAKDNR--E 237
Query: 242 LESSKRVSILGDPW 255
+ +
Sbjct: 238 IRPGGNYKMTLVEN 251
Score = 112 bits (281), Expect = 5e-28
Identities = 33/127 (25%), Positives = 52/127 (40%), Gaps = 2/127 (1%)
Query: 2 ITEVKKSDEGKYQCYVQNMVGERETKPALLTVHAPPSFVVRPQDQKVGLNGIASFQCVAE 61
I V +D G+YQC N VG +T+ APP FV + D + Q E
Sbjct: 444 ILNVDSADIGEYQCKASNDVGSDTCV-GSITLKAPPRFVKKLSDISTVVGEEVQLQATIE 502
Query: 62 GSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTT 121
G+ SV W ++ ++ + + TL+ + +AG + C + AG+
Sbjct: 503 GAEPISVAWFKDK-GEIVRESDNIWISYSENIATLQFSRAEPANAGKYTCQIKNEAGTQE 561
Query: 122 VRAFLQV 128
A L V
Sbjct: 562 CFATLSV 568
Score = 36.7 bits (85), Expect = 0.007
Identities = 10/33 (30%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
Query: 1 MITEVKKSDEGKYQCYVQNMVGERETKPALLTV 33
+ + ++ GKY C ++N G +E A L+V
Sbjct: 537 QFSRAEPANAGKYTCQIKNEAGTQECF-ATLSV 568
>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30,
N-terminal eight IG domains...; immunoglobulin domain;
HET: NAG NDG; 4.19A {Drosophila melanogaster}
Length = 816
Score = 205 bits (522), Expect = 1e-60
Identities = 67/287 (23%), Positives = 112/287 (39%), Gaps = 53/287 (18%)
Query: 2 ITEVKKSDEGKYQCYVQNMVGERETKPALLTVHAPPSFVVRPQDQKVGLNGIASFQCVAE 61
I + D GKY C V N VG + +LTV AP S + P Q V A F C
Sbjct: 310 IKDAVVEDSGKYLCVVNNSVGGESVE-TVLTVTAPLSAKIDPPTQTVDFGRPAVFTCQYT 368
Query: 62 GSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTT 121
G+P+ +V W ++G + E LRI+ V+KED G + C + S
Sbjct: 369 GNPIKTVSWMKDGKAI------------GHSESVLRIESVKKEDKGMYQCFVRNDRESAE 416
Query: 122 VRAFLQVTSVEDTPPPIVQVGPSNQTLPLHSVAFLPCQAVGSPPPHIRWYKNGNSLPP-- 179
A L++ PP+++ +T+ FL C A G+P P I W +G +
Sbjct: 417 ASAELKLGGRF--DPPVIRQAFQEETMEPGPSVFLKCVAGGNPTPEISWELDGKKIANND 474
Query: 180 -----EDTRINVSSSGSLQI-DVLRDD---------------------------FRAEPK 206
+ +N L I V +D + + +
Sbjct: 475 RYQVGQYVTVNGDVVSYLNITSVHANDGGLYKCIAKSKVGVAEHSAKLNVYGLPYIRQME 534
Query: 207 DTRVASGETALLECGPPKGQPEPTLHWKKNGQFIDLESSKRVSILGD 253
+ +GET ++ C P G P ++ W+++ + L +++ + +
Sbjct: 535 KKAIVAGETLIVTC-PVAGYPIDSIVWERDNR--ALPINRKQKVFPN 578
Score = 175 bits (446), Expect = 4e-50
Identities = 57/289 (19%), Positives = 100/289 (34%), Gaps = 43/289 (14%)
Query: 1 MITEVKKSD-EGKYQCYVQNMVG--ERETKPALLTVHAPPSFVVRP--------QDQKVG 49
I EV D YQC ++ + R + V P P +
Sbjct: 202 HIREVGPEDGYKSYQCRTKHRLTGETRLSATKGRLVITEPISSAVPKVVSLAKFDMKTYS 261
Query: 50 LNGIASFQCVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFF 109
+ + C A+G P+P W + GTL I+ ED+G +
Sbjct: 262 GSSTMALLCPAQGYPVPVFRWYKFIEGTTRKQAVVLNDRVKQVSGTLIIKDAVVEDSGKY 321
Query: 110 VCSALSVAGSTTVRAFLQVTSVEDTPPPIVQVGPSNQTLPLHSVAFLPCQAVGSPPPHIR 169
+C + G +V L VT+ P ++ P QT+ A CQ G+P +
Sbjct: 322 LCVVNNSVGGESVETVLTVTA-----PLSAKIDPPTQTVDFGRPAVFTCQYTGNPIKTVS 376
Query: 170 WYKNGNSLPPEDT--RIN--------------------VSSSGSLQIDVLRDD--FRAEP 205
W K+G ++ ++ RI +S L++ D R
Sbjct: 377 WMKDGKAIGHSESVLRIESVKKEDKGMYQCFVRNDRESAEASAELKLGGRFDPPVIRQAF 436
Query: 206 KDTRVASGETALLECGPPKGQPEPTLHWKKNGQFIDLESSKRVSILGDP 254
++ + G + L+C G P P + W+ +G+ + ++ R +
Sbjct: 437 QEETMEPGPSVFLKC-VAGGNPTPEISWELDGK--KIANNDRYQVGQYV 482
Score = 173 bits (441), Expect = 2e-49
Identities = 65/291 (22%), Positives = 101/291 (34%), Gaps = 46/291 (15%)
Query: 1 MITEVKKSDEGKYQCYVQNMVGERETKPALLTVHA---PPSFVVRPQDQKVGLNGIASFQ 57
I VKK D+G YQC+V+N E A L + PP Q++ + +
Sbjct: 392 RIESVKKEDKGMYQCFVRNDRESAEAS-AELKLGGRFDPPVIRQAFQEETMEPGPSVFLK 450
Query: 58 CVAEGSPLPSVFWTQEGSQVLM---FPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSAL 114
CVA G+P P + W +G ++ + Y ++ L I V D G + C A
Sbjct: 451 CVAGGNPTPEISWELDGKKIANNDRYQVGQYVTVNGDVVSYLNITSVHANDGGLYKCIAK 510
Query: 115 SVAGSTTVRAFLQVTSVEDTPPPIVQVGPSNQTLPLHSVAFLPCQAVGSPPPHIRWYKNG 174
S G A L V P I Q + + + C G P I W ++
Sbjct: 511 SKVGVAEHSAKLNVYG----LPYIRQ--MEKKAIVAGETLIVTCPVAGYPIDSIVWERDN 564
Query: 175 NSLPPEDTRINVSSSGSLQI-DVLRDD-------------------------------FR 202
+LP + + V +G+L I +V R+
Sbjct: 565 RALPI-NRKQKVFPNGTLIIENVERNSDQATYTCVAKNQEGYSARGSLEVQVMVLPRIIP 623
Query: 203 AEPKDTRVASGETALLECGPPKGQPEPTLHWKKNGQFIDLESSKRVSILGD 253
++ G+ L C P G + W +GQ I + S +G
Sbjct: 624 FAFEEGPAQVGQYLTLHCSVPGGDLPLNIDWTLDGQAISEDLGITTSRVGR 674
Score = 167 bits (425), Expect = 4e-47
Identities = 62/290 (21%), Positives = 100/290 (34%), Gaps = 52/290 (17%)
Query: 1 MITEVKKSDEGKYQCYVQNMVGERETKPALLTVHAPPSFVVRPQDQKVGLNGIASFQCVA 60
IT V +D G Y+C ++ VG E A L V+ P ++ + + + + C
Sbjct: 493 NITSVHANDGGLYKCIAKSKVGVAEHS-AKLNVYGLP-YIRQMEKKAIVAGETLIVTCPV 550
Query: 61 EGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQK-EDAGFFVCSALSVAG- 118
G P+ S+ W ++ + V GTL I+ V++ D + C A + G
Sbjct: 551 AGYPIDSIVWERDNRAL-----PINRKQKVFPNGTLIIENVERNSDQATYTCVAKNQEGY 605
Query: 119 STTVRAFLQVTSVEDTPPPIVQVGPSNQTLPLHSVAFLPCQAVGSPPP-HIRWYKNGNSL 177
S +QV P I+ + L C G P +I W +G ++
Sbjct: 606 SARGSLEVQVMV----LPRIIPFAFEEGPAQVGQYLTLHCSVPGGDLPLNIDWTLDGQAI 661
Query: 178 PPED---TRINVSSSGSLQI-DVLRDD----------------------------FRAEP 205
+ T L I V + EP
Sbjct: 662 SEDLGITTSRVGRRGSVLTIEAVEASHAGNFTCHARNLAGHQQFTTPLNVYVPPRWILEP 721
Query: 206 KDTRVASGETALLECGPPKGQPEPTLHWKKNG-----QFIDLESSKRVSI 250
D A G A +EC G P+P + WKK ++ DL+ S + +
Sbjct: 722 TDKAFAQGSDAKVEC-KADGFPKPQVTWKKAVGDTPGEYKDLKKSDNIRV 770
Score = 164 bits (416), Expect = 5e-46
Identities = 51/280 (18%), Positives = 81/280 (28%), Gaps = 44/280 (15%)
Query: 5 VKKSDEGKYQCYVQNMVGERETKPALLTVHAPPSFVVRPQDQKVGLNGIASFQCVAE--- 61
++ Y C +N G ++ + + + V A +C+
Sbjct: 107 RQEVHAQVYACLARNQFGSIISRDVHVRAVVAQYYEADVNKEHVIRGNSAVIKCLIPSFV 166
Query: 62 GSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDA-GFFVCSALSVAGST 120
+ V W + + G V G L I+ V ED + C
Sbjct: 167 ADFVEVVSWHTDEEENYFPGAEYDGKYLVLPSGELHIREVGPEDGYKSYQCRTKHRLTGE 226
Query: 121 TVR-AFLQVTSVED-----TPPPIVQVGPSNQTLPLHSVAFLPCQAVGSPPPHIRWYKNG 174
T A + + P + +T S L C A G P P RWYK
Sbjct: 227 TRLSATKGRLVITEPISSAVPKVVSLAKFDMKTYSGSSTMALLCPAQGYPVPVFRWYKFI 286
Query: 175 NSLPPEDTRI----NVSSSGSLQI-DVLRDD----------------------------F 201
+ + SG+L I D + +D
Sbjct: 287 EGTTRKQAVVLNDRVKQVSGTLIIKDAVVEDSGKYLCVVNNSVGGESVETVLTVTAPLSA 346
Query: 202 RAEPKDTRVASGETALLECGPPKGQPEPTLHWKKNGQFID 241
+ +P V G A+ C G P T+ W K+G+ I
Sbjct: 347 KIDPPTQTVDFGRPAVFTC-QYTGNPIKTVSWMKDGKAIG 385
Score = 162 bits (410), Expect = 4e-45
Identities = 47/210 (22%), Positives = 80/210 (38%), Gaps = 17/210 (8%)
Query: 1 MITEV-KKSDEGKYQCYVQNMVGERETKPALLTVHAPPSFV-VRPQDQKVGLNGIASFQC 58
+I V + SD+ Y C +N G + V P + ++ + + C
Sbjct: 582 IIENVERNSDQATYTCVAKNQEGYSARGSLEVQVMVLPRIIPFAFEEGPAQVGQYLTLHC 641
Query: 59 VAEGSPLP-SVFWTQEGSQVLMFPGNAYGHLHVTQE-GTLRIQGVQKEDAGFFVCSALSV 116
G LP ++ WT +G + V + L I+ V+ AG F C A ++
Sbjct: 642 SVPGGDLPLNIDWTLDGQAIS--EDLGITTSRVGRRGSVLTIEAVEASHAGNFTCHARNL 699
Query: 117 AGSTTVRAFLQVTSVEDTPPPIVQVGPSNQTLPLHSVAFLPCQAVGSPPPHIRWYKNGNS 176
AG L V PP + P+++ S A + C+A G P P + W K
Sbjct: 700 AGHQQFTTPLNVYV-----PPRWILEPTDKAFAQGSDAKVECKADGFPKPQVTWKKAVGD 754
Query: 177 LPPEDTRINVS-----SSGSLQI-DVLRDD 200
P E + S G+L + ++ + +
Sbjct: 755 TPGEYKDLKKSDNIRVEEGTLHVDNIQKTN 784
Score = 136 bits (343), Expect = 4e-36
Identities = 47/304 (15%), Positives = 87/304 (28%), Gaps = 64/304 (21%)
Query: 2 ITEVKKSDEGKYQCYVQNMVGERE-TKPALLTVHAPPSFVVRPQDQKVGLNG-IASFQCV 59
+ + + G + P F+ P ++ N A +C
Sbjct: 3 MPNERLKWLMLFAAVALIACGSQTLAANPPDADQKGPVFLKEPTNRIDFSNSTGAEIECK 62
Query: 60 AEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKED------AGFFVCSA 113
A G+P+P + W + + G+ G ++ +G L + ED A + C A
Sbjct: 63 ASGNPMPEIIWIRSDGTAV---GDVPGLRQISSDGKLVFPPFRAEDYRQEVHAQVYACLA 119
Query: 114 LSVAGSTTVRAFLQVTSVEDTPPPIVQVGPSNQTLPLHSVAFLPCQA---VGSPPPHIRW 170
+ GS R V + + + + + A + C V + W
Sbjct: 120 RNQFGSIISRDVH----VRAVVAQYYEADVNKEHVIRGNSAVIKCLIPSFVADFVEVVSW 175
Query: 171 YKNGNSLP----PEDTRINVSSSGSLQI-DVLRDD------------------------- 200
+ + D + V SG L I +V +D
Sbjct: 176 HTDEEENYFPGAEYDGKYLVLPSGELHIREVGPEDGYKSYQCRTKHRLTGETRLSATKGR 235
Query: 201 ---------------FRAEPKDTRVASGETALLECGPPKGQPEPTLHWKKNGQFIDLESS 245
A+ + T L C P +G P P W K + + +
Sbjct: 236 LVITEPISSAVPKVVSLAKFDMKTYSGSSTMALLC-PAQGYPVPVFRWYKFIEGTTRKQA 294
Query: 246 KRVS 249
++
Sbjct: 295 VVLN 298
Score = 120 bits (302), Expect = 1e-30
Identities = 31/200 (15%), Positives = 61/200 (30%), Gaps = 44/200 (22%)
Query: 96 LRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVTSVEDTPPPIVQVGPSNQTLPLHSVAF 155
+ + + + F AL GS T+ A + P ++ + + A
Sbjct: 1 MNMPNERLKWLMLFAAVALIACGSQTLAA--NPPDADQKGPVFLKEPTNRIDFSNSTGAE 58
Query: 156 LPCQAVGSPPPHIRWYK-NGNSLPPEDTRINVSSSGSLQID------------------- 195
+ C+A G+P P I W + +G ++ +SS G L
Sbjct: 59 IECKASGNPMPEIIWIRSDGTAVGDVPGLRQISSDGKLVFPPFRAEDYRQEVHAQVYACL 118
Query: 196 -----------------VLRDDFRAEPKDTRVASGETALLECGPPK--GQPEPTLHWKKN 236
V+ + A+ V G +A+++C P + W +
Sbjct: 119 ARNQFGSIISRDVHVRAVVAQYYEADVNKEHVIRGNSAVIKCLIPSFVADFVEVVSWHTD 178
Query: 237 GQFIDL---ESSKRVSILGD 253
+ E + +L
Sbjct: 179 EEENYFPGAEYDGKYLVLPS 198
Score = 110 bits (276), Expect = 3e-27
Identities = 34/138 (24%), Positives = 63/138 (45%), Gaps = 4/138 (2%)
Query: 1 MITEVKKSDEGKYQCYVQNMVGERETKPALLTVHAPPSFVVRPQDQKVGLNGIASFQCVA 60
I V+ S G + C+ +N+ G ++ L V+ PP +++ P D+ A +C A
Sbjct: 680 TIEAVEASHAGNFTCHARNLAGHQQFT-TPLNVYVPPRWILEPTDKAFAQGSDAKVECKA 738
Query: 61 EGSPLPSVFWTQEGSQVLMFPGNAYGHLHVT-QEGTLRIQGVQKEDAGFFVCSALSVAGS 119
+G P P V W + + ++ +EGTL + +QK + G+++C A++ GS
Sbjct: 739 DGFPKPQVTWKKAVGDTPGEYKDLKKSDNIRVEEGTLHVDNIQKTNEGYYLCEAINGIGS 798
Query: 120 TTVRAFLQVTSVEDTPPP 137
+ SV+
Sbjct: 799 GLSAVIM--ISVQAHHHH 814
>1qz1_A Neural cell adhesion molecule 1, 140 kDa isoform; IG modules, NCAM;
2.00A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4
PDB: 1ie5_A
Length = 291
Score = 183 bits (467), Expect = 7e-57
Identities = 49/206 (23%), Positives = 74/206 (35%), Gaps = 9/206 (4%)
Query: 1 MITEVKKSDEGKYQCYVQNMVGERETKPALLTVHAPPSFVVRPQDQKVGLNGIASFQCVA 60
I D G Y+C V G + + + F P Q+ A C
Sbjct: 65 TIYNANIDDAGIYKCVVTAEDGTQSEATVNVKIFQKLMFKNAPTPQEFKEGEDAVIVCDV 124
Query: 61 EGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGST 120
S P++ W +G V++ V L+I+G++K D G + C +A
Sbjct: 125 VSSLPPTIIWKHKGRDVILKKD---VRFIVLSNNYLQIRGIKKTDEGTYRCEGRILARGE 181
Query: 121 TVRAFLQVTSVEDTPPPIVQVGPSNQTLPLHSVAFLPCQAVGSPPPHIRWYKNGNSLPPE 180
+QV V P + N T L L C A G P P + W K+G + E
Sbjct: 182 INFKDIQVI-VNVPPTVQARQSIVNATANLGQSVTLVCDADGFPEPTMSWTKDGEPIENE 240
Query: 181 D----TRINVSSSGSLQI-DVLRDDF 201
+ I S L I +V ++D
Sbjct: 241 EEDDEKHIFSDDSSELTIRNVDKNDE 266
Score = 151 bits (383), Expect = 2e-44
Identities = 47/251 (18%), Positives = 78/251 (31%), Gaps = 43/251 (17%)
Query: 37 PSFVVRPQDQKVGLNGIASFQCVAEGSPL-PSVFWTQEGSQVLMFPGNAYGHLHVTQE-G 94
+ P ++ + F C G + W + L + +
Sbjct: 3 LQVDIVPSQGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDDDSS 62
Query: 95 TLRIQGVQKEDAGFFVCSALSVAGST-TVRAFLQVTSVEDTPPPIVQVGPSNQTLPLHSV 153
TL I +DAG + C + G+ +++ + + P+ Q
Sbjct: 63 TLTIYNANIDDAGIYKCVVTAEDGTQSEATVNVKI-----FQKLMFKNAPTPQEFKEGED 117
Query: 154 AFLPCQAVGSPPPHIRWYKNGNSLPPE-DTRINVSSSGSLQI-DVLRDD----------- 200
A + C V S PP I W G + + D R V S+ LQI + + D
Sbjct: 118 AVIVCDVVSSLPPTIIWKHKGRDVILKKDVRFIVLSNNYLQIRGIKKTDEGTYRCEGRIL 177
Query: 201 ---------------------FRAEPKDTRVASGETALLECGPPKGQPEPTLHWKKNGQF 239
R + G++ L C G PEPT+ W K+G+
Sbjct: 178 ARGEINFKDIQVIVNVPPTVQARQSIVNATANLGQSVTLVC-DADGFPEPTMSWTKDGEP 236
Query: 240 IDLESSKRVSI 250
I+ E
Sbjct: 237 IENEEEDDEKH 247
Score = 135 bits (342), Expect = 3e-38
Identities = 36/133 (27%), Positives = 59/133 (44%), Gaps = 3/133 (2%)
Query: 1 MITEVKKSDEGKYQCYVQNMVG-ERETKPALLTVHAPPSFVVRPQ--DQKVGLNGIASFQ 57
I +KK+DEG Y+C + + E K + V+ PP+ R + L +
Sbjct: 158 QIRGIKKTDEGTYRCEGRILARGEINFKDIQVIVNVPPTVQARQSIVNATANLGQSVTLV 217
Query: 58 CVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVA 117
C A+G P P++ WT++G + + H+ L I+ V K D +VC A + A
Sbjct: 218 CDADGFPEPTMSWTKDGEPIENEEEDDEKHIFSDDSSELTIRNVDKNDEAEYVCIAENKA 277
Query: 118 GSTTVRAFLQVTS 130
G L+V +
Sbjct: 278 GEQDASIHLKVFA 290
Score = 92.2 bits (229), Expect = 4e-22
Identities = 35/153 (22%), Positives = 51/153 (33%), Gaps = 37/153 (24%)
Query: 137 PIVQVGPSNQTLPLHSVAFLPCQAVGSPP-PHIRWYK-NGNSLPPEDTRINVS----SSG 190
V + PS + + F CQ G I W+ NG L P RI+V S
Sbjct: 3 LQVDIVPSQGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDDDSS 62
Query: 191 SLQI-DVLRDD-----------------------------FRAEPKDTRVASGETALLEC 220
+L I + DD F+ P GE A++ C
Sbjct: 63 TLTIYNANIDDAGIYKCVVTAEDGTQSEATVNVKIFQKLMFKNAPTPQEFKEGEDAVIVC 122
Query: 221 GPPKGQPEPTLHWKKNGQFIDLESSKRVSILGD 253
PT+ WK G+ + L+ R +L +
Sbjct: 123 -DVVSSLPPTIIWKHKGRDVILKKDVRFIVLSN 154
>2wim_A N-CAM 2, NCAM2, neural cell adhesion molecule 2; cell membrane,
transmembrane, immunoglobulin; HET: NDG NAG; 3.00A {Homo
sapiens}
Length = 291
Score = 181 bits (461), Expect = 6e-56
Identities = 46/203 (22%), Positives = 75/203 (36%), Gaps = 9/203 (4%)
Query: 1 MITEVKKSDEGKYQCYVQNMVGERETKPALLTVHAPPSFVVRPQDQKVGLNGIASFQCVA 60
I D G Y+C + G+ + +L ++ +F Q+ A C
Sbjct: 63 TIYNANIEDAGIYRCQATDAKGQTQEATVVLEIYQKLTFREVVSPQEFKQGEDAEVVCRV 122
Query: 61 EGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSAL-SVAGS 119
SP P+V W +V N + + L+I + K D G + C G
Sbjct: 123 SSSPAPAVSWLYHNEEVTTISDNRF---AMLANNNLQILNINKSDEGIYRCEGRVEARGE 179
Query: 120 TTVRAFLQVTSVEDTPPPIVQV-GPSNQTLPLHSVAFLPCQAVGSPPPHIRWYKNGNSLP 178
R + + +V PP I N T C+A GSP P I W++NG +
Sbjct: 180 IDFRDIIVIVNV---PPAISMPQKSFNATAERGEEMTFSCRASGSPEPAISWFRNGKLIE 236
Query: 179 PEDTRINVSSSGSLQI-DVLRDD 200
+ I S+ L + +++ D
Sbjct: 237 ENEKYILKGSNTELTVRNIINSD 259
Score = 159 bits (404), Expect = 1e-47
Identities = 44/254 (17%), Positives = 78/254 (30%), Gaps = 45/254 (17%)
Query: 35 APPSFVVRPQDQKVGLNGIASFQCVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEG 94
A + ++ + F C A G P ++ +G +
Sbjct: 3 ALLQVTISLSKVELSVGESKFFTCTAIGEPESIDWYNPQG--EKIISTQRVVVQKEGVRS 60
Query: 95 TLRIQGVQKEDAGFFVCSALSVAGST-TVRAFLQVTSVEDTPPPIVQVGPSNQTLPLHSV 153
L I EDAG + C A G T L++ + S Q
Sbjct: 61 RLTIYNANIEDAGIYRCQATDAKGQTQEATVVLEI-----YQKLTFREVVSPQEFKQGED 115
Query: 154 AFLPCQAVGSPPPHIRWYKNGNSLPPE-DTRINVSSSGSLQI-DVLRDD----------- 200
A + C+ SP P + W + + D R + ++ +LQI ++ + D
Sbjct: 116 AEVVCRVSSSPAPAVSWLYHNEEVTTISDNRFAMLANNNLQILNINKSDEGIYRCEGRVE 175
Query: 201 ---------------------FRAEPKDTRVASGETALLECGPPKGQPEPTLHWKKNGQF 239
+ + GE C G PEP + W +NG+
Sbjct: 176 ARGEIDFRDIIVIVNVPPAISMPQKSFNATAERGEEMTFSC-RASGSPEPAISWFRNGK- 233
Query: 240 IDLESSKRVSILGD 253
+E +++ + G
Sbjct: 234 -LIEENEKYILKGS 246
Score = 117 bits (295), Expect = 2e-31
Identities = 36/143 (25%), Positives = 61/143 (42%), Gaps = 11/143 (7%)
Query: 1 MITEVKKSDEGKYQCYVQNMV-GERETKPALLTVHAPPSFVV--RPQDQKVGLNGIASFQ 57
I + KSDEG Y+C + GE + + ++ V+ PP+ + + + +F
Sbjct: 156 QILNINKSDEGIYRCEGRVEARGEIDFRDIIVIVNVPPAISMPQKSFNATAERGEEMTFS 215
Query: 58 CVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVA 117
C A GSP P++ W + G + N ++ L ++ + D G +VC A + A
Sbjct: 216 CRASGSPEPAISWFRNGKLI---EENEK-YILKGSNTELTVRNIINSDGGPYVCRATNKA 271
Query: 118 GSTTVRAFLQVTSVEDTPPPIVQ 140
G +AFLQV
Sbjct: 272 GEDEKQAFLQVFV----QHHHHH 290
>2rik_A Titin; I-SET IG fold, poly-IG linear array, structural protein;
1.60A {Oryctolagus cuniculus} PDB: 2rjm_A
Length = 284
Score = 178 bits (452), Expect = 9e-55
Identities = 50/205 (24%), Positives = 88/205 (42%), Gaps = 14/205 (6%)
Query: 1 MITEVKKSDEGKYQCYVQNMVGERETKPALLTVHAPPSFVVRPQD-QKVGLNGIASFQCV 59
+ +V K D G+Y CY N+ G+ A L V PP F+ + + + V + ++C
Sbjct: 64 TVLKVTKGDAGQYTCYASNVAGKDSCS-AQLGVQEPPRFIKKLEPSRIVKQDEHTRYECK 122
Query: 60 AEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGS 119
GSP V W ++ +++ + + V L + + ED+G + C A + AGS
Sbjct: 123 IGGSPEIKVLWYKDETEIQ--ESSKFRMSFVESVAVLEMYNLSVEDSGDYTCEAHNAAGS 180
Query: 120 TTVRAFLQVTSVEDTPPPIVQVGPSNQTLPLHSVAFLPCQAVGSPPPHIRWYKNGNSLPP 179
+ L+V PP+ + P + L C+ G+PP + W+K+ L
Sbjct: 181 ASSSTSLKVKE-----PPVFRKKPHPVETLKGADVHLECELQGTPPFQVSWHKDKRELRS 235
Query: 180 EDTRINVSSSG---SLQI-DVLRDD 200
+ + S S+ I +V D
Sbjct: 236 -GKKYKIMSENFLTSIHILNVDSAD 259
Score = 173 bits (441), Expect = 5e-53
Identities = 57/250 (22%), Positives = 95/250 (38%), Gaps = 40/250 (16%)
Query: 35 APPSFVVRPQDQKVGLNGIASFQCVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEG 94
APP F ++P + L +F+C G+ + W ++ ++ PG Y V
Sbjct: 4 APPFFDLKPVSVDLALGESGTFKCHVTGTAPIKITWAKDNREIR--PGGNYKMTLVENTA 61
Query: 95 TLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVTSVEDTPPPIVQVGPSNQTLPLHSVA 154
TL + V K DAG + C A +VAG + A L V PP ++ ++ +
Sbjct: 62 TLTVLKVTKGDAGQYTCYASNVAGKDSCSAQLGVQE----PPRFIKKLEPSRIVKQDEHT 117
Query: 155 FLPCQAVGSPPPHIRWYKNGNSLPPED--TRINVSSSGSLQI-DVLRDD----------- 200
C+ GSP + WYK+ + V S L++ ++ +D
Sbjct: 118 RYECKIGGSPEIKVLWYKDETEIQESSKFRMSFVESVAVLEMYNLSVEDSGDYTCEAHNA 177
Query: 201 -----------------FRAEPKDTRVASGETALLECGPPKGQPEPTLHWKKNGQFIDLE 243
FR +P G LEC +G P + W K+ + +L
Sbjct: 178 AGSASSSTSLKVKEPPVFRKKPHPVETLKGADVHLEC-ELQGTPPFQVSWHKDKR--ELR 234
Query: 244 SSKRVSILGD 253
S K+ I+ +
Sbjct: 235 SGKKYKIMSE 244
Score = 128 bits (324), Expect = 1e-35
Identities = 28/133 (21%), Positives = 48/133 (36%), Gaps = 9/133 (6%)
Query: 1 MITEVKKSDEGKYQCYVQNMVGERETKPALLTVHAPPSFVVRPQDQKVGLNGIASFQCVA 60
+ + D G Y C N G + L V PP F +P + +C
Sbjct: 158 EMYNLSVEDSGDYTCEAHNAAGSASSS-TSLKVKEPPVFRKKPHPVETLKGADVHLECEL 216
Query: 61 EGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEG---TLRIQGVQKEDAGFFVCSALSVA 117
+G+P V W ++ ++ G + E ++ I V D G + C A +
Sbjct: 217 QGTPPFQVSWHKDKREL--RSGK---KYKIMSENFLTSIHILNVDSADIGEYQCKASNDV 271
Query: 118 GSTTVRAFLQVTS 130
GS T + + +
Sbjct: 272 GSYTCVGSITLKA 284
>1bih_A Hemolin; insect immunity, LPS-binding, homophilic adhesion; 3.10A
{Hyalophora cecropia} SCOP: b.1.1.4 b.1.1.4 b.1.1.4
b.1.1.4
Length = 395
Score = 178 bits (454), Expect = 8e-54
Identities = 51/300 (17%), Positives = 92/300 (30%), Gaps = 51/300 (17%)
Query: 1 MITEVKKSDEGKYQCYVQNMVGERETKPALLTVHAPPSFVVRPQDQKVGLNGIASFQC-V 59
+ + SDEG YQC+ + G ++ + + ++ C +
Sbjct: 65 VFLRPQASDEGHYQCFAETPAGVASSRVISFRKTYLIASPAKTHEKTPIEGRPFQLDCVL 124
Query: 60 AEGSPLPSVFWTQEGSQVLM--FPGNAYGHLHVTQEGTLRIQGVQKEDA---GFFVCSAL 114
P P + W + S + + +G L V KED +VC+A
Sbjct: 125 PNAYPKPLITWKKRLSGADPNADVTDFDRRITAGPDGNLYFTIVTKEDVSDIYKYVCTAK 184
Query: 115 SVAGSTTVR-AFLQVTSVED-----TPPPIVQVGPSNQTLPLHSVAFLPCQAVGSPPPHI 168
+ A V ++ V P+ Q + V + C +P +
Sbjct: 185 NAAVDEEVVLVEYEIKGVTKDNSGYKGEPVPQYVSKDMMAKAGDVTMIYCMYGSNPMGYP 244
Query: 169 RWYKNGNSLPPED----TRINVSSSGSLQI-DVLRDD----------------------- 200
++KNG + TR N +S L L +D
Sbjct: 245 NYFKNGKDVNGNPEDRITRHNRTSGKRLLFKTTLPEDEGVYTCEVDNGVGKPQKHSLKLT 304
Query: 201 ------FRAEPKD-TRVASGETALLECGPPKGQPEPTLHWKKNGQFIDLESSKRVSILGD 253
+ +P+ V G+ + C G P P + W N + + S R ++
Sbjct: 305 VVSAPKYEQKPEKVIVVKQGQDVTIPC-KVTGLPAPNVVWSHNAKPL---SGGRATVTDS 360
Score = 161 bits (408), Expect = 4e-47
Identities = 39/211 (18%), Positives = 63/211 (29%), Gaps = 19/211 (9%)
Query: 2 ITEVKKSDEGKYQCYVQNMVGERETKPALLTV----------HAPPSFVVRPQDQKVGLN 51
+T+ SD KY C +N + E + P +D
Sbjct: 168 VTKEDVSDIYKYVCTAKNAAVDEEVVLVEYEIKGVTKDNSGYKGEPVPQYVSKDMMAKAG 227
Query: 52 GIASFQCVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVC 111
+ C+ +P+ + + G V P + + T L + ED G + C
Sbjct: 228 DVTMIYCMYGSNPMGYPNYFKNGKDVNGNPEDRITRHNRTSGKRLLFKTTLPEDEGVYTC 287
Query: 112 SALSVAGSTTVR-AFLQVTSVEDTPPPIVQVGPSNQTLPLHSVAFLPCQAVGSPPPHIRW 170
+ G L V S P Q + +PC+ G P P++ W
Sbjct: 288 EVDNGVGKPQKHSLKLTVVS----APKYEQKPEKVIVVKQGQDVTIPCKVTGLPAPNVVW 343
Query: 171 YKNGNSLPPEDTRINVSSSGSLQI-DVLRDD 200
N L + + L I V D
Sbjct: 344 SHNAKPLSGGRATV---TDSGLVIKGVKNGD 371
Score = 143 bits (363), Expect = 2e-40
Identities = 49/271 (18%), Positives = 80/271 (29%), Gaps = 59/271 (21%)
Query: 31 LTVHAPPSFVVRPQDQKVGLNGIASFQCVAEGSPLPSVF-WTQEGSQVLMFPGNAYGHLH 89
L V P +P + N +C+ EG+ + W ++G + +
Sbjct: 1 LPVDKYPVLKDQPAEVLFRENNPTVLECIIEGNDQGVKYSWKKDGKS---YNWQEHNAAL 57
Query: 90 VTQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVTSVEDTPPPIVQVGPSNQTLP 149
EG+L Q D G + C A + AG + R V S T +T
Sbjct: 58 RKDEGSLVFLRPQASDEGHYQCFAETPAGVASSR----VISFRKTYLIASPAKTHEKTPI 113
Query: 150 LHSVAFLPCQAV-GSPPPHIRWYKNGNSLPP------EDTRINVSSSGSLQI-DVLRDD- 200
L C P P I W K + P D RI G+L V ++D
Sbjct: 114 EGRPFQLDCVLPNAYPKPLITWKKRLSGADPNADVTDFDRRITAGPDGNLYFTIVTKEDV 173
Query: 201 -----------------------------------------FRAEPKDTRVASGETALLE 219
+ KD +G+ ++
Sbjct: 174 SDIYKYVCTAKNAAVDEEVVLVEYEIKGVTKDNSGYKGEPVPQYVSKDMMAKAGDVTMIY 233
Query: 220 CGPPKGQPEPTLHWKKNGQFIDLESSKRVSI 250
C P ++ KNG+ ++ R++
Sbjct: 234 C-MYGSNPMGYPNYFKNGKDVNGNPEDRITR 263
Score = 124 bits (313), Expect = 3e-33
Identities = 34/129 (26%), Positives = 52/129 (40%), Gaps = 8/129 (6%)
Query: 1 MITEVKKSDEGKYQCYVQNMVGERETKPALLTVHAPPSFVVRPQDQKVGLNG-IASFQCV 59
+ DEG Y C V N VG+ + LTV + P + +P+ V G + C
Sbjct: 273 LFKTTLPEDEGVYTCEVDNGVGKPQKHSLKLTVVSAPKYEQKPEKVIVVKQGQDVTIPCK 332
Query: 60 AEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGS 119
G P P+V W+ + G + L I+GV+ D G++ C A + G
Sbjct: 333 VTGLPAPNVVWSHNAKPL---SGGRA----TVTDSGLVIKGVKNGDKGYYGCRATNEHGD 385
Query: 120 TTVRAFLQV 128
+QV
Sbjct: 386 KYFETLVQV 394
Score = 99.2 bits (247), Expect = 6e-24
Identities = 26/155 (16%), Positives = 44/155 (28%), Gaps = 37/155 (23%)
Query: 136 PPIVQVGPSNQTLPLHSVAFLPCQAVGSPPP-HIRWYKNGNSLPP-EDTRINVSSSGSLQ 193
P+++ P+ ++ L C G+ W K+G S E GSL
Sbjct: 6 YPVLKDQPAEVLFRENNPTVLECIIEGNDQGVKYSWKKDGKSYNWQEHNAALRKDEGSLV 65
Query: 194 IDVLRD------------------------------DFRAEPKDTRVASGETALLECGPP 223
+ A+ + G L+C P
Sbjct: 66 FLRPQASDEGHYQCFAETPAGVASSRVISFRKTYLIASPAKTHEKTPIEGRPFQLDCVLP 125
Query: 224 KGQPEPTLHWKKNGQFID-----LESSKRVSILGD 253
P+P + WKK D + +R++ D
Sbjct: 126 NAYPKPLITWKKRLSGADPNADVTDFDRRITAGPD 160
>1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus
gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB:
2om5_A
Length = 382
Score = 178 bits (452), Expect = 1e-53
Identities = 62/290 (21%), Positives = 88/290 (30%), Gaps = 47/290 (16%)
Query: 1 MITEVKKSDEGKYQCYVQNMVGERETKPALLTVHAPPSFVVRPQD-QKVGLNGIASFQCV 59
+ VK D G YQC N G ++ A L F +D K+ F C
Sbjct: 65 ISNPVKAKDAGSYQCVATNARGTVVSREASLRFGFLQEFSAEERDPVKITEGWGVMFTCS 124
Query: 60 A-EGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAG 118
P S W + G L I + D G + C A S
Sbjct: 125 PPPHYPALSYRWLLNEFPNFIPADG--RRFVSQTTGNLYIAKTEASDLGNYSCFATSHID 182
Query: 119 STTVRAFLQVT-------SVEDTPPPIVQVGPSNQTLPLHSVAFLPCQAVGSPPPHIRWY 171
T F + + P I P++ + L C A G+P P I+W
Sbjct: 183 FITKSVFSKFSQLSLAAEDARQYAPSIKAKFPADTYALTGQMVTLECFAFGNPVPQIKWR 242
Query: 172 KNGNSLPPEDTRINVSSSGSLQI-DVLRDD----------------------------FR 202
K S + +SS L I +V +D +
Sbjct: 243 KLDGSQTSK----WLSSEPLLHIQNVDFEDEGTYECEAENIKGRDTYQGRIIIHAQPDWL 298
Query: 203 AEPKDTRVASGETALLECGPPKGQPEPTLHWKKNGQFIDLESSKRVSILG 252
DT G C G+P P + W ++GQ L S R+ + G
Sbjct: 299 DVITDTEADIGSDLRWSC-VASGKPRPAVRWLRDGQ--PLASQNRIEVSG 345
Score = 160 bits (406), Expect = 9e-47
Identities = 48/212 (22%), Positives = 86/212 (40%), Gaps = 27/212 (12%)
Query: 1 MITEVKKSDEGKYQCYVQNMVGE----RETKPALLTV-------HAPPSFVVRPQDQKVG 49
I + + SD G Y C+ + + +K + L++ +AP P D
Sbjct: 161 YIAKTEASDLGNYSCFATSHIDFITKSVFSKFSQLSLAAEDARQYAPSIKAKFPADTYAL 220
Query: 50 LNGIASFQCVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFF 109
+ + +C A G+P+P + W + ++ E L IQ V ED G +
Sbjct: 221 TGQMVTLECFAFGNPVPQIKWRKLDGSQTSK--------WLSSEPLLHIQNVDFEDEGTY 272
Query: 110 VCSALSVAGSTTVRAFLQVTSVEDTPPPIVQVGPSNQTLPLHSVAFLPCQAVGSPPPHIR 169
C A ++ G T + + + + P ++ + S C A G P P +R
Sbjct: 273 ECEAENIKGRDTYQGRIIIHA-----QPDWLDVITDTEADIGSDLRWSCVASGKPRPAVR 327
Query: 170 WYKNGNSLPPEDTRINVSSSGSLQI-DVLRDD 200
W ++G L ++ RI V S G L+ ++ +D
Sbjct: 328 WLRDGQPLASQN-RIEV-SGGELRFSKLVLED 357
Score = 124 bits (313), Expect = 2e-33
Identities = 35/130 (26%), Positives = 59/130 (45%), Gaps = 7/130 (5%)
Query: 1 MITEVKKSDEGKYQCYVQNMVGERETKPALLTVHAPPSFVVRPQDQKVGLNGIASFQCVA 60
I V DEG Y+C +N+ G + + +HA P ++ D + + + CVA
Sbjct: 260 HIQNVDFEDEGTYECEAENIKGRDTYQ-GRIIIHAQPDWLDVITDTEADIGSDLRWSCVA 318
Query: 61 EGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGST 120
G P P+V W ++G + + + V+ G LR + ED+G + C A + G+
Sbjct: 319 SGKPRPAVRWLRDGQPL-----ASQNRIEVSG-GELRFSKLVLEDSGMYQCVAENKHGTV 372
Query: 121 TVRAFLQVTS 130
A L V +
Sbjct: 373 YASAELTVQA 382
Score = 119 bits (300), Expect = 2e-31
Identities = 47/251 (18%), Positives = 71/251 (28%), Gaps = 58/251 (23%)
Query: 36 PPSFVVRPQDQKVGLNGI---ASFQCVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQ 92
P F +P + C A +P + W G+++ M P +
Sbjct: 4 GPVFEEQPAHTLFPEGSAEEKVTLTCRARANPPATYRWKMNGTELKMGP----DSRYRLV 59
Query: 93 EGTLRI-QGVQKEDAGFFVCSALSVAGSTTVR-AFLQVTSVEDTPPPIVQVGPSNQTLPL 150
G L I V+ +DAG + C A + G+ R A L+ +
Sbjct: 60 AGDLVISNPVKAKDAGSYQCVATNARGTVVSREASLRFG----FLQEFSAEERDPVKITE 115
Query: 151 HSVAFLPCQAV-GSPPPHIRWYKNG--NSLPPEDTRINVSSSGSLQI-DVLRDD------ 200
C P RW N N +P + R ++G+L I D
Sbjct: 116 GWGVMFTCSPPPHYPALSYRWLLNEFPNFIPADGRRFVSQTTGNLYIAKTEASDLGNYSC 175
Query: 201 ----------------------------------FRAEPKDTRVASGETALLECGPPKGQ 226
P DT +G+ LEC G
Sbjct: 176 FATSHIDFITKSVFSKFSQLSLAAEDARQYAPSIKAKFPADTYALTGQMVTLEC-FAFGN 234
Query: 227 PEPTLHWKKNG 237
P P + W+K
Sbjct: 235 PVPQIKWRKLD 245
Score = 96.9 bits (241), Expect = 4e-23
Identities = 26/155 (16%), Positives = 44/155 (28%), Gaps = 35/155 (22%)
Query: 134 TPPPIVQVGPSNQTLPLHSV---AFLPCQAVGSPPPHIRWYKNGNSLPPEDTRINVSSSG 190
+ P+ + P++ P S L C+A +PP RW NG L +G
Sbjct: 2 SYGPVFEEQPAHTLFPEGSAEEKVTLTCRARANPPATYRWKMNGTELKMGPDSRYRLVAG 61
Query: 191 SL--------------------------------QIDVLRDDFRAEPKDTRVASGETALL 218
L + L++ E ++ G +
Sbjct: 62 DLVISNPVKAKDAGSYQCVATNARGTVVSREASLRFGFLQEFSAEERDPVKITEGWGVMF 121
Query: 219 ECGPPKGQPEPTLHWKKNGQFIDLESSKRVSILGD 253
C PP P + W N + + R +
Sbjct: 122 TCSPPPHYPALSYRWLLNEFPNFIPADGRRFVSQT 156
>3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor
protein tyrosine phosphatase; HET: NAG; 2.00A {Mus
musculus} PDB: 3jxa_A*
Length = 384
Score = 176 bits (449), Expect = 4e-53
Identities = 60/285 (21%), Positives = 86/285 (30%), Gaps = 45/285 (15%)
Query: 5 VKKSDEGKYQCYVQNMVGERETKPALLTVHAPPSFVVRPQ-DQKVGLNGIASFQCVA-EG 62
K D G YQC N G ++ A L +F R + V C
Sbjct: 70 NKTQDAGTYQCIATNSFGTIVSREAKLQFAYLENFKTRTRSTVSVRRGQGMVLLCGPPPH 129
Query: 63 SPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTTV 122
S S W + G L I V+K D G + C + + V
Sbjct: 130 SGELSYAWIFNEYPSYQDNR----RFVSQETGNLYIAKVEKSDVGNYTCVVTNTVTNHKV 185
Query: 123 RAFLQVTSVEDT------PPPIVQVGPSNQTLPLHSVAFLPCQAVGSPPPHIRWYKNGNS 176
+ + P I P + L C A+G+P P I W +
Sbjct: 186 LGPPTPLILRNDGVMGEYEPKIEVQFPETVPAEKGTTVKLECFALGNPVPTILWRRADGK 245
Query: 177 LPPEDTRINVSSSGSLQI-DVLRDD----------------------------FRAEPKD 207
R S+G L+I + ++D + D
Sbjct: 246 PIARKARR-HKSNGILEIPNFQQEDAGSYECVAENSRGKNVAKGQLTFYAQPNWVQIIND 304
Query: 208 TRVASGETALLECGPPKGQPEPTLHWKKNGQFIDLESSKRVSILG 252
VA E+ EC G+P+PT W KNG L + R+ I
Sbjct: 305 IHVAMEESVFWEC-KANGRPKPTYRWLKNGD--PLLTRDRIQIEQ 346
Score = 163 bits (415), Expect = 4e-48
Identities = 57/211 (27%), Positives = 84/211 (39%), Gaps = 23/211 (10%)
Query: 1 MITEVKKSDEGKYQCYVQNMVGERET--KPALLTV--------HAPPSFVVRPQDQKVGL 50
I +V+KSD G Y C V N V + P L + + P V P+
Sbjct: 160 YIAKVEKSDVGNYTCVVTNTVTNHKVLGPPTPLILRNDGVMGEYEPKIEVQFPETVPAEK 219
Query: 51 NGIASFQCVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFV 110
+C A G+P+P++ W + + + A H G L I Q+EDAG +
Sbjct: 220 GTTVKLECFALGNPVPTILWRRADGKPI--ARKARRHKS---NGILEIPNFQQEDAGSYE 274
Query: 111 CSALSVAGSTTVRAFLQVTSVEDTPPPIVQVGPSNQTLPLHSVAFLPCQAVGSPPPHIRW 170
C A + G + L + P ++ + + F C+A G P P RW
Sbjct: 275 CVAENSRGKNVAKGQLTFYA-----QPNWVQIINDIHVAMEESVFWECKANGRPKPTYRW 329
Query: 171 YKNGNSLPPEDTRINVSSSGSLQI-DVLRDD 200
KNG+ L D RI + G+L I V D
Sbjct: 330 LKNGDPLLTRD-RIQI-EQGTLNITIVNLSD 358
Score = 130 bits (328), Expect = 2e-35
Identities = 50/262 (19%), Positives = 82/262 (31%), Gaps = 56/262 (21%)
Query: 35 APPSFVVRPQDQKVGLN---GIASFQCVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVT 91
+ P FV P L+ C +G+P P + W G+ V + +
Sbjct: 4 SGPVFVQEPSHVMFPLDSEEKKVKLSCEVKGNPKPHIRWKLNGTDVDIGM----DFRYSV 59
Query: 92 QEGTLRIQGV-QKEDAGFFVCSALSVAGS-TTVRAFLQVTSVEDTPPPIVQVGPSNQTLP 149
+G+L I + +DAG + C A + G+ + A LQ S ++
Sbjct: 60 VDGSLLINNPNKTQDAGTYQCIATNSFGTIVSREAKLQFA----YLENFKTRTRSTVSVR 115
Query: 150 LHSVAFLPCQAV-GSPPPHIRWYKNGNSLPPEDTRINVSSSGSLQI-DVLRDD------- 200
L C S W N ++ R +G+L I V + D
Sbjct: 116 RGQGMVLLCGPPPHSGELSYAWIFNEYPSYQDNRRFVSQETGNLYIAKVEKSDVGNYTCV 175
Query: 201 --------------------------------FRAEPKDTRVASGETALLECGPPKGQPE 228
P+ G T LEC G P
Sbjct: 176 VTNTVTNHKVLGPPTPLILRNDGVMGEYEPKIEVQFPETVPAEKGTTVKLEC-FALGNPV 234
Query: 229 PTLHWKK-NGQFIDLESSKRVS 249
PT+ W++ +G+ I ++ + S
Sbjct: 235 PTILWRRADGKPIARKARRHKS 256
Score = 126 bits (318), Expect = 5e-34
Identities = 37/130 (28%), Positives = 58/130 (44%), Gaps = 7/130 (5%)
Query: 1 MITEVKKSDEGKYQCYVQNMVGERETKPALLTVHAPPSFVVRPQDQKVGLNGIASFQCVA 60
I ++ D G Y+C +N G+ K LT +A P++V D V + ++C A
Sbjct: 261 EIPNFQQEDAGSYECVAENSRGKNVAK-GQLTFYAQPNWVQIINDIHVAMEESVFWECKA 319
Query: 61 EGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGST 120
G P P+ W + G +L + + ++GTL I V DAG + C A + G
Sbjct: 320 NGRPKPTYRWLKNGDPLL-----TRDRIQI-EQGTLNITIVNLSDAGMYQCVAENKHGVI 373
Query: 121 TVRAFLQVTS 130
A L V +
Sbjct: 374 FSSAELSVIA 383
Score = 94.5 bits (235), Expect = 2e-22
Identities = 33/153 (21%), Positives = 46/153 (30%), Gaps = 36/153 (23%)
Query: 136 PPIVQVGPSNQTLPLHS---VAFLPCQAVGSPPPHIRWYKNGNSLPPEDTRINVSSSGSL 192
P+ PS+ PL S L C+ G+P PHIRW NG + GSL
Sbjct: 5 GPVFVQEPSHVMFPLDSEEKKVKLSCEVKGNPKPHIRWKLNGTDVDIGMDFRYSVVDGSL 64
Query: 193 QID--------------------------------VLRDDFRAEPKDTRVASGETALLEC 220
I+ L + V G+ +L C
Sbjct: 65 LINNPNKTQDAGTYQCIATNSFGTIVSREAKLQFAYLENFKTRTRSTVSVRRGQGMVLLC 124
Query: 221 GPPKGQPEPTLHWKKNGQFIDLESSKRVSILGD 253
GPP E + W N + ++R
Sbjct: 125 GPPPHSGELSYAWIFNEYPS-YQDNRRFVSQET 156
>2yd9_A Receptor-type tyrosine-protein phosphatase S; hydrolase; HET: NAG
B3P; 2.60A {Homo sapiens}
Length = 304
Score = 172 bits (437), Expect = 3e-52
Identities = 65/258 (25%), Positives = 94/258 (36%), Gaps = 40/258 (15%)
Query: 32 TVHAPPSFVVRPQDQKVGLNGIASFQCVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVT 91
T PP F+ P+DQ G+ASF C A G P P V W ++G +V +
Sbjct: 2 TGEEPPRFIKEPKDQIGVSGGVASFVCQATGDPKPRVTWNKKGKKVNSQRFE-TIEFDES 60
Query: 92 QEGTLRIQGVQ-KEDAGFFVCSALSVAGSTTVRAFLQVTSVEDTP--PPIVQVGPSNQTL 148
LRIQ ++ D + C A + G TV A L V + P P + +GP + +
Sbjct: 61 AGAVLRIQPLRTPRDENVYECVAQNSVGEITVHAKLTVLREDQLPSGFPNIDMGPQLKVV 120
Query: 149 PLHSVAFLPCQAVGSPPPHIRWYKNGNSLPP--EDTRINVSSSGSLQI-DVLRDD----- 200
A + C A G+P P I W+K+ + P + RI SG+LQI D
Sbjct: 121 ERTRTATMLCAASGNPDPEITWFKDFLPVDPSASNGRIKQLRSGALQIESSEETDQGKYE 180
Query: 201 ---------------------------FRAEPKDTRVASGETALLECGPPKGQPEPTLHW 233
F P + G + C G P P + W
Sbjct: 181 CVATNSAGVRYSSPANLYVRVQNVAPRFSILPMSHEIMPGGNVNITCV-AVGSPMPYVKW 239
Query: 234 KKNGQFIDLESSKRVSIL 251
+ + + E V
Sbjct: 240 MQGAEDLTPEDDMPVGRN 257
Score = 162 bits (412), Expect = 1e-48
Identities = 57/208 (27%), Positives = 91/208 (43%), Gaps = 16/208 (7%)
Query: 1 MITEVK-KSDEGKYQCYVQNMVGERETKPALLTVHAP-------PSFVVRPQDQKVGLNG 52
I ++ DE Y+C QN VGE A LTV P+ + PQ + V
Sbjct: 66 RIQPLRTPRDENVYECVAQNSVGEITVH-AKLTVLREDQLPSGFPNIDMGPQLKVVERTR 124
Query: 53 IASFQCVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCS 112
A+ C A G+P P + W ++ V P + G + + G L+I+ ++ D G + C
Sbjct: 125 TATMLCAASGNPDPEITWFKDFLPV--DPSASNGRIKQLRSGALQIESSEETDQGKYECV 182
Query: 113 ALSVAGS-TTVRAFLQVTSVEDTPPPIVQVGPSNQTLPLHSVAFLPCQAVGSPPPHIRWY 171
A + AG + A L V V++ P P + + + C AVGSP P+++W
Sbjct: 183 ATNSAGVRYSSPANLYVR-VQNVAPRFSI-LPMSHEIMPGGNVNITCVAVGSPMPYVKWM 240
Query: 172 KNGNSLPPEDTRINVSSSGSLQIDVLRD 199
+ L PED L++ ++D
Sbjct: 241 QGAEDLTPEDDMPV--GRNVLELTDVKD 266
Score = 119 bits (301), Expect = 3e-32
Identities = 36/149 (24%), Positives = 60/149 (40%), Gaps = 16/149 (10%)
Query: 1 MITEVKKSDEGKYQCYVQNMVGERETKPALLTVH---APPSFVVRPQDQKVGLNGIASFQ 57
I +++D+GKY+C N G R + PA L V P F + P ++ G +
Sbjct: 167 QIESSEETDQGKYECVATNSAGVRYSSPANLYVRVQNVAPRFSILPMSHEIMPGGNVNIT 226
Query: 58 CVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVA 117
CVA GSP+P V W Q + + G ++ +D+ + C A+S
Sbjct: 227 CVAVGSPMPYVKWMQGAEDL---TPEDDMPV-----GRNVLELTDVKDSANYTCVAMSSL 278
Query: 118 GSTTVRAFLQVTSVEDTPPPIVQVGPSNQ 146
G A + +V+ P + +
Sbjct: 279 GVIEAVAQI---TVKSLPKAGTK--HHHH 302
Score = 97.6 bits (243), Expect = 6e-24
Identities = 36/159 (22%), Positives = 52/159 (32%), Gaps = 42/159 (26%)
Query: 136 PPIVQVGPSNQTLPLHSVAFLPCQAVGSPPPHIRWYKNGNSLPPED---TRINVSSSGSL 192
PP P +Q VA CQA G P P + W K G + + + S+ L
Sbjct: 6 PPRFIKEPKDQIGVSGGVASFVCQATGDPKPRVTWNKKGKKVNSQRFETIEFDESAGAVL 65
Query: 193 QID-----------------------------VLRDD--------FRAEPKDTRVASGET 215
+I VLR+D P+ V T
Sbjct: 66 RIQPLRTPRDENVYECVAQNSVGEITVHAKLTVLREDQLPSGFPNIDMGPQLKVVERTRT 125
Query: 216 ALLECGPPKGQPEPTLHWKKNGQFIDLESS-KRVSILGD 253
A + C G P+P + W K+ +D +S R+ L
Sbjct: 126 ATMLC-AASGNPDPEITWFKDFLPVDPSASNGRIKQLRS 163
Score = 46.7 bits (111), Expect = 4e-06
Identities = 15/54 (27%), Positives = 23/54 (42%), Gaps = 1/54 (1%)
Query: 201 FRAEPKDTRVASGETALLECGPPKGQPEPTLHWKKNGQFIDLESSKRVSILGDP 254
F EPKD SG A C G P+P + W K G+ ++ + + +
Sbjct: 9 FIKEPKDQIGVSGGVASFVC-QATGDPKPRVTWNKKGKKVNSQRFETIEFDESA 61
>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker,
immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A
Length = 642
Score = 179 bits (456), Expect = 3e-52
Identities = 48/273 (17%), Positives = 84/273 (30%), Gaps = 48/273 (17%)
Query: 1 MITEVKKSDEGKYQCYVQNMVGERETKPALLTV-HAPPSFVVRPQDQKVGLNGIASFQCV 59
+ V ++D G Y+C +QN + + P +L V + P + P S C
Sbjct: 345 TLLSVTRNDVGPYECGIQNELSVDHSDPVILNVLYGPDDPTISPSYTYYRPGVNLSLSCH 404
Query: 60 AEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGS 119
A +P W +G+ L I + ++++G + C A + A
Sbjct: 405 AASNPPAQYSWLIDGN-------------IQQHTQELFISNITEKNSGLYTCQANNSASG 451
Query: 120 TTVRAFLQVTSVEDTPPPIVQVGPSNQTLPLHSVAFLPCQAVGSPPPHIRWYKNGNSLPP 179
+ +T P +++ + C+ W+ NG SLP
Sbjct: 452 HSRTTVKTITVSA-ELPKPSISSNNSKPVEDKDAVAFTCEPEAQNTT-YLWWVNGQSLPV 509
Query: 180 EDTRINVSSSGSLQI-DVLRDD------------------------------FRAEPKDT 208
+ + +L + +V R+D P D+
Sbjct: 510 SPRLQLSNGNRTLTLFNVTRNDARAYVCGIQNSVSANRSDPVTLDVLYGPDTPIISPPDS 569
Query: 209 RVASGETALLECGPPKGQPEPTLHWKKNGQFID 241
SG L C P P W+ NG
Sbjct: 570 SYLSGANLNLSC-HSASNPSPQYSWRINGIPQQ 601
Score = 150 bits (379), Expect = 3e-41
Identities = 48/280 (17%), Positives = 79/280 (28%), Gaps = 40/280 (14%)
Query: 1 MITEVKKSDEGKYQCYVQNMVGERETKPALLTVHA--PPSFVVRPQDQKVGLNGIASFQC 58
+I + ++D G Y +V E V+ P + + V +F C
Sbjct: 74 LIQNIIQNDTGFYTLHVIKSDLVNEEATGQFRVYPELPKPSISSNNSKPVEDKDAVAFTC 133
Query: 59 VAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAG 118
E + W + + P TL + V + D + C +
Sbjct: 134 EPETQD-ATYLWWVNNQSLPVSPRLQL----SNGNRTLTLFNVTRNDTASYKCETQNPVS 188
Query: 119 STTVR-AFLQVTSVEDTPPPIVQVGPSNQTLPLHSVAFLPCQAVGSPPPHIRWYKNGNSL 177
+ L V P + P N + L C A +PP W+ NG
Sbjct: 189 ARRSDSVILNVLY----GPDAPTISPLNTSYRSGENLNLSCHAASNPPAQYSWFVNGTFQ 244
Query: 178 P-----------PEDTRI----------NVSSSGSLQIDVLRD---DFRAEPKDTRVASG 213
++ ++ + I V + F V
Sbjct: 245 QSTQELFIPNITVNNSGSYTCQAHNSDTGLNRTTVTTITVYAEPPKPFITSNNSNPVEDE 304
Query: 214 ETALLECGPPKGQPEPTLHWKKNGQFIDLESSKRVSILGD 253
+ L C P+ Q T W N Q L S R+ + D
Sbjct: 305 DAVALTC-EPEIQN-TTYLWWVNNQ--SLPVSPRLQLSND 340
Score = 147 bits (373), Expect = 2e-40
Identities = 48/277 (17%), Positives = 78/277 (28%), Gaps = 39/277 (14%)
Query: 1 MITEVKKSDEGKYQCYVQNMVGERE-TKPALLTVHAPPS--FVVRPQDQKVGLNGIASFQ 57
I + ++ G Y C N T +TV+A P F+ V +
Sbjct: 251 FIPNITVNNSGSYTCQAHNSDTGLNRTTVTTITVYAEPPKPFITSNNSNPVEDEDAVALT 310
Query: 58 CVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEG-TLRIQGVQKEDAGFFVCSALSV 116
C E + W + + L ++ + TL + V + D G + C +
Sbjct: 311 CEPEIQN-TTYLWWVNNQSLPV-----SPRLQLSNDNRTLTLLSVTRNDVGPYECGIQNE 364
Query: 117 AGSTTVRAFLQVTSVEDTPPPIVQVGPSNQTLPLHSVAFLPCQAVGSPPPHIRWYKNGNS 176
V P + PS L C A +PP W +GN
Sbjct: 365 LSVDHSDP---VILNVLYGPDDPTISPSYTYYRPGVNLSLSCHAASNPPAQYSWLIDGNI 421
Query: 177 LPPEDT-RIN--------------------VSSSGSLQIDVLRDD---FRAEPKDTRVAS 212
I+ S + I V + + V
Sbjct: 422 QQHTQELFISNITEKNSGLYTCQANNSASGHSRTTVKTITVSAELPKPSISSNNSKPVED 481
Query: 213 GETALLECGPPKGQPEPTLHWKKNGQFIDLESSKRVS 249
+ C P+ Q T W NGQ + + ++S
Sbjct: 482 KDAVAFTC-EPEAQN-TTYLWWVNGQSLPVSPRLQLS 516
Score = 137 bits (345), Expect = 1e-36
Identities = 34/206 (16%), Positives = 63/206 (30%), Gaps = 27/206 (13%)
Query: 2 ITEVKKSDEGKYQCYVQNMVGERETKPALLTVHA----PPSFVVRPQDQKVGLNGIASFQ 57
I+ + + + G Y C N + T+ P + + V +F
Sbjct: 430 ISNITEKNSGLYTCQANNSASGHSRT-TVKTITVSAELPKPSISSNNSKPVEDKDAVAFT 488
Query: 58 CVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQE-GTLRIQGVQKEDAGFFVCSALSV 116
C E + W G + L ++ TL + V + DA +VC +
Sbjct: 489 CEPEAQN-TTYLWWVNGQSLP-----VSPRLQLSNGNRTLTLFNVTRNDARAYVCGIQNS 542
Query: 117 AGS-TTVRAFLQVTSVEDTPPPIVQVGPSNQTLPLHSVAFLPCQAVGSPPPHIRWYKNGN 175
+ + L V P + P + + + L C + +P P W NG
Sbjct: 543 VSANRSDPVTLDVLY----GPDTPIISPPDSSYLSGANLNLSCHSASNPSPQYSWRINGI 598
Query: 176 SLPPEDTRINVSSSGSLQI-DVLRDD 200
+ L I + ++
Sbjct: 599 PQ---------QHTQVLFIAKITPNN 615
Score = 123 bits (311), Expect = 5e-32
Identities = 40/256 (15%), Positives = 66/256 (25%), Gaps = 57/256 (22%)
Query: 31 LTVHAPPSFVVRPQDQKVGLNGIASFQCVAEGSPLPSVFWTQEGSQVLMFPGNAY----- 85
LT+ + P V ++ L W + Y
Sbjct: 2 LTIESTPFNVAEGKE--------VLLLVHNLPQHLFGYSWYKGERVDGNRQIIGYVIGTQ 53
Query: 86 ---------GHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVTSVEDTPP 136
G + +L IQ + + D GF+ + A Q + P
Sbjct: 54 QATPGPAYSGREIIYPNASLLIQNIIQNDTGFYTLHVIKSDLVNE-EATGQFRVYPELPK 112
Query: 137 PIVQVGPSNQTLPLHSVAFLPCQAVGSPPPHIRWYKNGNSLPPEDTRINVSSSGSLQI-D 195
P + +++ + C+ W+ N SLP + + +L + +
Sbjct: 113 PSISS-NNSKPVEDKDAVAFTCEPET-QDATYLWWVNNQSLPVSPRLQLSNGNRTLTLFN 170
Query: 196 VLRDD------------------------------FRAEPKDTRVASGETALLECGPPKG 225
V R+D P +T SGE L C
Sbjct: 171 VTRNDTASYKCETQNPVSARRSDSVILNVLYGPDAPTISPLNTSYRSGENLNLSCHAA-S 229
Query: 226 QPEPTLHWKKNGQFID 241
P W NG F
Sbjct: 230 NPPAQYSWFVNGTFQQ 245
Score = 104 bits (261), Expect = 2e-25
Identities = 24/129 (18%), Positives = 42/129 (32%), Gaps = 14/129 (10%)
Query: 2 ITEVKKSDEGKYQCYVQNMVGERETKPALLTV-HAPPSFVVRPQDQKVGLNGIASFQCVA 60
+ V ++D Y C +QN V + P L V + P + ++ P D + C +
Sbjct: 524 LFNVTRNDARAYVCGIQNSVSANRSDPVTLDVLYGPDTPIISPPDSSYLSGANLNLSCHS 583
Query: 61 EGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGST 120
+P P W G L I + + G + C ++A
Sbjct: 584 ASNPSPQYSWRINGIPQ-------------QHTQVLFIAKITPNNNGTYACFVSNLATGR 630
Query: 121 TVRAFLQVT 129
+T
Sbjct: 631 NNSIVKSIT 639
Score = 37.6 bits (87), Expect = 0.004
Identities = 7/36 (19%), Positives = 16/36 (44%), Gaps = 1/36 (2%)
Query: 1 MITEVKKSDEGKYQCYVQNMVGERETKPALLTVHAP 36
I ++ ++ G Y C+V N+ R + ++
Sbjct: 607 FIAKITPNNNGTYACFVSNLATGRNNS-IVKSITVS 641
>3p3y_A Neurofascin; IG domains, cell adhesion; HET: NAG; 2.60A {Homo
sapiens} PDB: 3p40_A*
Length = 404
Score = 173 bits (441), Expect = 9e-52
Identities = 64/293 (21%), Positives = 102/293 (34%), Gaps = 46/293 (15%)
Query: 1 MITEVKKSDEGKYQCYVQNMVGERETKPALLTVHAPPSFVVRP-QDQKVGLNGIASFQC- 58
+ EG+YQC+ +N G + L V P + V + QC
Sbjct: 80 RSGGRPEEYEGEYQCFARNKFGTALSNRIRLQVSKSPLWPKENLDPVVVQEGAPLTLQCN 139
Query: 59 VAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDA-GFFVCSALSVA 117
G P P +FW + + + + G L V +D + C+A
Sbjct: 140 PPPGLPSPVIFWMSSSMEPI--TQD--KRVSQGHNGDLYFSNVMLQDMQTDYSCNARFHF 195
Query: 118 GSTTVR---AFLQVTS---VEDTPPPIV--QVGPSNQTLPLHSVAFLPCQAVGSPPPHIR 169
T + L+V + V + P + Q S+Q + L C A G P P I
Sbjct: 196 THTIQQKNPFTLKVLTTRGVAERTPSFMYPQGTASSQMVLRGMDLLLECIASGVPTPDIA 255
Query: 170 WYKNGNSLPPEDTRINVSSSGSLQI-DVLRDD---------------------------- 200
WYK G LP + + + + +L+I +V +D
Sbjct: 256 WYKKGGDLPSDKAKF-ENFNKALRITNVSEEDSGEYFCLASNKMGSIRHTISVRVKAAPY 314
Query: 201 FRAEPKDTRVASGETALLECGPPKGQPEPTLHWKKNGQFIDLESSKRVSILGD 253
+ EPK+ +A GE L C G P+PT+ W NG+ + +
Sbjct: 315 WLDEPKNLILAPGEDGRLVC-RANGNPKPTVQWMVNGEPLQSAPPNPNREVAG 366
Score = 145 bits (368), Expect = 4e-41
Identities = 48/215 (22%), Positives = 75/215 (34%), Gaps = 25/215 (11%)
Query: 1 MITEVKKSD-EGKYQCYVQNMVGE--RETKPALLTVH-------APPSFVV---RPQDQK 47
+ V D + Y C + ++ P L V PSF+ Q
Sbjct: 174 YFSNVMLQDMQTDYSCNARFHFTHTIQQKNPFTLKVLTTRGVAERTPSFMYPQGTASSQM 233
Query: 48 VGLNGIASFQCVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAG 107
V +C+A G P P + W ++G + P + LRI V +ED+G
Sbjct: 234 VLRGMDLLLECIASGVPTPDIAWYKKGGDL---PSD--KAKFENFNKALRITNVSEEDSG 288
Query: 108 FFVCSALSVAGSTTVRAFLQVTSVEDTPPPIVQVGPSNQTLPLHSVAFLPCQAVGSPPPH 167
+ C A + GS ++V + P P N L L C+A G+P P
Sbjct: 289 EYFCLASNKMGSIRHTISVRVKA-----APYWLDEPKNLILAPGEDGRLVCRANGNPKPT 343
Query: 168 IRWYKNGNSLPPEDTRINVS-SSGSLQI-DVLRDD 200
++W NG L N + ++ D
Sbjct: 344 VQWMVNGEPLQSAPPNPNREVAGDTIIFRDTQISS 378
Score = 136 bits (344), Expect = 1e-37
Identities = 52/272 (19%), Positives = 84/272 (30%), Gaps = 57/272 (20%)
Query: 28 PALLTVHAPPSFVVRP-QDQKVGLNGIASFQCVAEGSPLPSVFWTQEGSQVLMFPGNAYG 86
+ PP+ + +D V +C A+G+P PS WT+ +
Sbjct: 8 SIQNELTQPPTITKQSAKDHIVDPRDNILIECEAKGNPAPSFHWTRNSRFFNIAKDPRVS 67
Query: 87 HLHVTQEGTLRIQ----GVQKEDAGFFVCSALSVAGSTTVR-AFLQVTSVEDTPPPIVQV 141
+ GTL I G +E G + C A + G+ LQV+ P +
Sbjct: 68 MRR--RSGTLVIDFRSGGRPEEYEGEYQCFARNKFGTALSNRIRLQVS----KSPLWPKE 121
Query: 142 GPSNQTLPLHSVAFLPCQAV-GSPPPHIRWYKNGNSLPPEDTRINVSSSGSLQI-DVLRD 199
+ + L C G P P I W + +D R++ +G L +V+
Sbjct: 122 NLDPVVVQEGAPLTLQCNPPPGLPSPVIFWMSSSMEPITQDKRVSQGHNGDLYFSNVMLQ 181
Query: 200 DFRAE------------------------------------------PKDTRVASGETAL 217
D + + V G L
Sbjct: 182 DMQTDYSCNARFHFTHTIQQKNPFTLKVLTTRGVAERTPSFMYPQGTASSQMVLRGMDLL 241
Query: 218 LECGPPKGQPEPTLHWKKNGQFIDLESSKRVS 249
LEC G P P + W K G + + +K +
Sbjct: 242 LEC-IASGVPTPDIAWYKKGGDLPSDKAKFEN 272
Score = 131 bits (330), Expect = 1e-35
Identities = 31/131 (23%), Positives = 49/131 (37%), Gaps = 4/131 (3%)
Query: 1 MITEVKKSDEGKYQCYVQNMVGERETKPALLTVHAPPSFVVRPQDQKVGLNGIASFQCVA 60
IT V + D G+Y C N +G + V A P ++ P++ + C A
Sbjct: 278 RITNVSEEDSGEYFCLASNKMGSIRHT-ISVRVKAAPYWLDEPKNLILAPGEDGRLVCRA 336
Query: 61 EGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGST 120
G+P P+V W G + P N T+ + Q + C+ + G
Sbjct: 337 NGNPKPTVQWMVNGEPLQSAPPNPN---REVAGDTIIFRDTQISSRAVYQCNTSNEHGYL 393
Query: 121 TVRAFLQVTSV 131
AF+ V V
Sbjct: 394 LANAFVSVLDV 404
Score = 102 bits (256), Expect = 4e-25
Identities = 31/157 (19%), Positives = 49/157 (31%), Gaps = 38/157 (24%)
Query: 134 TPPPIVQVGPSNQTLPLHSVAFLPCQAVGSPPPHIRWYKNGNSLPP-EDTRINVS-SSGS 191
PP I + + + + C+A G+P P W +N +D R+++ SG+
Sbjct: 15 QPPTITKQSAKDHIVDPRDNILIECEAKGNPAPSFHWTRNSRFFNIAKDPRVSMRRRSGT 74
Query: 192 LQID-----------------------------------VLRDDFRAEPKDTRVASGETA 216
L ID + V G
Sbjct: 75 LVIDFRSGGRPEEYEGEYQCFARNKFGTALSNRIRLQVSKSPLWPKENLDPVVVQEGAPL 134
Query: 217 LLECGPPKGQPEPTLHWKKNGQFIDLESSKRVSILGD 253
L+C PP G P P + W + + KRVS +
Sbjct: 135 TLQCNPPPGLPSPVIFWMSSSMEP-ITQDKRVSQGHN 170
>2v5m_A Dscam; neurobiology SPL immunoglobulin domain, cell adhesion,
membrane, development protein; HET: NAG; 1.95A
{Drosophila melanogaster} PDB: 2v5s_A* 2v5r_A*
Length = 388
Score = 165 bits (420), Expect = 6e-49
Identities = 51/282 (18%), Positives = 82/282 (29%), Gaps = 43/282 (15%)
Query: 6 KKSDEGKYQCYVQNMVGERETKPALLTVHAPPSFVVRPQDQKVGLNGIASFQCVAE---G 62
++ Y C +N G ++ + + + V A +C+
Sbjct: 73 QEVHAQVYACLARNQFGSIISRDVHVRAVVAQYYEADVNKEHVIRGNSAVIKCLIPSFVA 132
Query: 63 SPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDA-GFFVCSALSVAGSTT 121
+ V W + + G V G L I+ V ED + C T
Sbjct: 133 DFVEVVSWHTDEEENYFPGAEYDGKYLVLPSGELHIREVGPEDGYKSYQCRTKHRLTGET 192
Query: 122 VR---AFLQVTS--VEDTPPPIVQVGPSNQTLPLHSVAFLPCQAVGSPPPHIRWYKNGNS 176
V + + + P + L + L C A G P P RWYK
Sbjct: 193 RLSATKGRLVITEPISSSAPRTPALVQKPLELMVAHTISLLCPAQGFPAPSFRWYKFIEG 252
Query: 177 LPPEDTRI----NVSSSGSLQI-DVLRDD----------------------------FRA 203
+ + SG+L I D + +D +
Sbjct: 253 TTRKQAVVLNDRVKQVSGTLIIKDAVVEDSGKYLCVVNNSVGGESVETVLTVTAPLSAKI 312
Query: 204 EPKDTRVASGETALLECGPPKGQPEPTLHWKKNGQFIDLESS 245
+P V G A+ C G P T+ W K+G+ I S
Sbjct: 313 DPPTQTVDFGRPAVFTC-QYTGNPIKTVSWMKDGKAIGHSES 353
Score = 152 bits (385), Expect = 9e-44
Identities = 49/211 (23%), Positives = 77/211 (36%), Gaps = 24/211 (11%)
Query: 1 MITEVKKSD-EGKYQCYVQNMVG--ERETKPALLTVHAPPSFVVRP-------QDQKVGL 50
I EV D YQC ++ + R + V P P + ++ +
Sbjct: 167 HIREVGPEDGYKSYQCRTKHRLTGETRLSATKGRLVITEPISSSAPRTPALVQKPLELMV 226
Query: 51 NGIASFQCVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFV 110
S C A+G P PS W + GTL I+ ED+G ++
Sbjct: 227 AHTISLLCPAQGFPAPSFRWYKFIEGTTRKQAVVLNDRVKQVSGTLIIKDAVVEDSGKYL 286
Query: 111 CSALSVAGSTTVRAFLQVTSVEDTPPPIVQVGPSNQTLPLHSVAFLPCQAVGSPPPHIRW 170
C + G +V L VT+ P ++ P QT+ A CQ G+P + W
Sbjct: 287 CVVNNSVGGESVETVLTVTA-----PLSAKIDPPTQTVDFGRPAVFTCQYTGNPIKTVSW 341
Query: 171 YKNGNSLPPEDTRINVSSSGSLQI-DVLRDD 200
K+G ++ S L+I V ++D
Sbjct: 342 MKDGKAIGH--------SESVLRIESVKKED 364
Score = 120 bits (302), Expect = 9e-32
Identities = 40/128 (31%), Positives = 57/128 (44%), Gaps = 13/128 (10%)
Query: 1 MITEVKKSDEGKYQCYVQNMVGERETKPALLTVHAPPSFVVRPQDQKVGLNGIASFQCVA 60
+I + D GKY C V N VG + +LTV AP S + P Q V A F C
Sbjct: 273 IIKDAVVEDSGKYLCVVNNSVGGESVE-TVLTVTAPLSAKIDPPTQTVDFGRPAVFTCQY 331
Query: 61 EGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGST 120
G+P+ +V W ++G + E LRI+ V+KED G + C + S
Sbjct: 332 TGNPIKTVSWMKDGKAI------------GHSESVLRIESVKKEDKGMYQCFVRNDRESA 379
Query: 121 TVRAFLQV 128
A L++
Sbjct: 380 EASAELKL 387
Score = 115 bits (288), Expect = 1e-29
Identities = 42/269 (15%), Positives = 82/269 (30%), Gaps = 64/269 (23%)
Query: 36 PPSFVVRPQDQ-KVGLNGIASFQCVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEG 94
P F+ P ++ + A +C A G+P+P + W + + + G ++ +G
Sbjct: 3 GPVFLKEPTNRIDFSNSTGAEIECKASGNPMPEIIWIRSDGTAVG---DVPGLRQISSDG 59
Query: 95 TLRIQGVQKED------AGFFVCSALSVAGS-TTVRAFLQVTSVEDTPPPIVQVGPSNQT 147
L + ED A + C A + GS + ++ + + +
Sbjct: 60 KLVFPPFRAEDYRQEVHAQVYACLARNQFGSIISRDVHVRAVV-----AQYYEADVNKEH 114
Query: 148 LPLHSVAFLPCQA---VGSPPPHIRWYKNGNSLP----PEDTRINVSSSGSLQI-DVLRD 199
+ + A + C V + W+ + D + V SG L I +V +
Sbjct: 115 VIRGNSAVIKCLIPSFVADFVEVVSWHTDEEENYFPGAEYDGKYLVLPSGELHIREVGPE 174
Query: 200 DFRAE---------------------------------------PKDTRVASGETALLEC 220
D K + T L C
Sbjct: 175 DGYKSYQCRTKHRLTGETRLSATKGRLVITEPISSSAPRTPALVQKPLELMVAHTISLLC 234
Query: 221 GPPKGQPEPTLHWKKNGQFIDLESSKRVS 249
P +G P P+ W K + + + ++
Sbjct: 235 -PAQGFPAPSFRWYKFIEGTTRKQAVVLN 262
Score = 86.9 bits (215), Expect = 1e-19
Identities = 23/161 (14%), Positives = 46/161 (28%), Gaps = 42/161 (26%)
Query: 135 PPPIVQVGPSNQTLPLHSVAFLPCQAVGSPPPHIRWYKNGNS-LPPEDTRINVSSSGSLQ 193
P ++ + + A + C+A G+P P I W ++ + + +SS G L
Sbjct: 3 GPVFLKEPTNRIDFSNSTGAEIECKASGNPMPEIIWIRSDGTAVGDVPGLRQISSDGKLV 62
Query: 194 IDVLR------------------------------------DDFRAEPKDTRVASGETAL 217
R + A+ V G +A+
Sbjct: 63 FPPFRAEDYRQEVHAQVYACLARNQFGSIISRDVHVRAVVAQYYEADVNKEHVIRGNSAV 122
Query: 218 LECGPPK--GQPEPTLHWKKNGQFIDL---ESSKRVSILGD 253
++C P + W + + E + +L
Sbjct: 123 IKCLIPSFVADFVEVVSWHTDEEENYFPGAEYDGKYLVLPS 163
>3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical
bundle cytokine, CY receptor complex, extracellular
complex; HET: NAG; 4.30A {Homo sapiens}
Length = 423
Score = 162 bits (411), Expect = 3e-47
Identities = 32/293 (10%), Positives = 75/293 (25%), Gaps = 40/293 (13%)
Query: 2 ITEVKKSDEGKYQCYVQNMVGERETKPALLTVHAPPSFVVRPQDQKVGLNGIASFQCVAE 61
+ Y ++ L + V +V ++ + Q + +
Sbjct: 19 NNDSSVGKSSSYPMVSESPED----LGCALRPQSSG-TVYEAAAVEVDVSASITLQVLVD 73
Query: 62 GSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTT 121
S W + S + + L ++ I + + AG ++ S A + T
Sbjct: 74 APGNISCLWVFKHSSL---NCQPHFDLQNRGVVSMVILKMTETQAGEYLLFIQSEATNYT 130
Query: 122 VRAFLQVTSVEDTPPPIVQVGPSNQTLPLHSVAFLPCQAVGSPPPHIRWYKNGNSLPP-E 180
+ + + + + + + A L C + P P + W + +
Sbjct: 131 ILFTVSIRN-----TLLYTLRRPYFRKMENQDA-LVCISESVPEPIVEWVLCDSQGESCK 184
Query: 181 DTRINVSSSGSLQID-------------------------VLRDDFRAEPKDTRVASGET 215
+ V + L + + GE
Sbjct: 185 EESPAVVKKEEKVLHELFGTDIRCCARNELGRECTRLFTIDLNQTPQTTLPQLFLKVGEP 244
Query: 216 ALLECGPPKGQPEPTLHWKKNGQFIDLESSKRVSILGDPWFDSRRSRSIFGSV 268
+ C L W+ + ++ + +S R + SV
Sbjct: 245 LWIRCKAVHVNHGFGLTWELENKALEEGNYFEMSTYSTNRTMIRILFAFVSSV 297
Score = 142 bits (360), Expect = 8e-40
Identities = 37/275 (13%), Positives = 79/275 (28%), Gaps = 52/275 (18%)
Query: 1 MITEVKKSDEGKYQCYVQNMVGERETKPALLTVHAPPSFVVRPQDQKVGLNGIASFQCVA 60
+I ++ ++ G+Y ++Q+ T +++ + +R + + + C++
Sbjct: 106 VILKMTETQAGEYLLFIQSEATN-YTILFTVSIRNTLLYTLRRPYFRK-MENQDALVCIS 163
Query: 61 EGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGST 120
E P P V W SQ + V ++ + + D C A + G
Sbjct: 164 ESVPEPIVEWVLCDSQGESCKEESPA---VVKKEEKVLHELFGTD---IRCCARNELGRE 217
Query: 121 TVRAFLQVTSVEDTPPPIVQVGPSNQTLPLHSVAFLPCQAV-GSPPPHIRWYKNGNSLPP 179
R F ++ P L + ++ C+AV + + W +L
Sbjct: 218 CTRLFT----IDLNQTPQTT--LPQLFLKVGEPLWIRCKAVHVNHGFGLTWELENKALEE 271
Query: 180 E--------DTRINVSSSGSLQI-DVLRDD---------------------------FRA 203
T + + V R+D
Sbjct: 272 GNYFEMSTYSTNRTMIRILFAFVSSVARNDTGYYTCSSSKHPSQSALVTIVEKGFINATN 331
Query: 204 EPKDTRVASGETALLECGPPKGQPEPTLHWKKNGQ 238
+D + E K P+ W + +
Sbjct: 332 SSEDYEIDQYEEFCFSV-RFKAYPQIRCTWTFSRK 365
Score = 116 bits (292), Expect = 3e-30
Identities = 25/203 (12%), Positives = 59/203 (29%), Gaps = 19/203 (9%)
Query: 5 VKKSDEGKYQCYVQNMVGERETKPALLTVHAPPSFVVRPQDQKVGLNGIASFQCVA-EGS 63
+ + +C +N +G T+ L T+ + + + +C A +
Sbjct: 198 LHELFGTDIRCCARNELGRECTR--LFTIDLNQTPQTTLPQLFLKVGEPLWIRCKAVHVN 255
Query: 64 PLPSVFWTQEGSQVL---MFPGNAYGHLHVTQE-GTLRIQGVQKEDAGFFVCSALSVAGS 119
+ W E + F + Y + V + D G++ CS+
Sbjct: 256 HGFGLTWELENKALEEGNYFEMSTYSTNRTMIRILFAFVSSVARNDTGYYTCSSSKHPSQ 315
Query: 120 TTVRAFLQVTSVEDTPPPIVQVGPSNQTLPL--HSVAFLPCQAVGSPPPHIRWYKNGNSL 177
+ A + + + S++ + + + P W + S
Sbjct: 316 S---ALVTIVE-----KGFINATNSSEDYEIDQYEEFCFSVRFKAYPQIRCTWTFSRKSF 367
Query: 178 PPEDTRINVSSSGSLQIDVLRDD 200
P E + + + S+
Sbjct: 368 PCE--QKGLDNGYSISKFCNHKH 388
Score = 96.3 bits (239), Expect = 7e-23
Identities = 18/142 (12%), Positives = 35/142 (24%), Gaps = 16/142 (11%)
Query: 1 MITEVKKSDEGKYQCYVQNMVGERETKPALLTVHAPPSFVVRPQDQK--VGLNGIASFQC 58
++ V ++D G Y C + AL+T+ + + F
Sbjct: 293 FVSSVARNDTGYYTCSSSKHPSQ----SALVTIVEKGFINATNSSEDYEIDQYEEFCFSV 348
Query: 59 VAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAG 118
+ P WT + ++ K G ++ A +
Sbjct: 349 RFKAYPQIRCTWTFSRKSFPC------EQKGLDNGYSISKFCNHKHQPGEYIFHAENDDA 402
Query: 119 STTVRAFLQVTSVEDTPPPIVQ 140
T L + S
Sbjct: 403 QFTKMFTLNIRS----GTKHHH 420
>2v5t_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; phosphorylation,
immunoglobulin domain, membrane, glycoprote adhesion,
transmembrane; HET: NAG; 2.00A {Homo sapiens}
Length = 189
Score = 146 bits (371), Expect = 9e-44
Identities = 37/167 (22%), Positives = 58/167 (34%), Gaps = 5/167 (2%)
Query: 35 APPSFVVRPQDQKVGLNGIASFQCVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEG 94
+ +F Q+ A C SP P+V W +V N +
Sbjct: 1 SMLTFREVVSPQEFKQGEDAEVVCRVSSSPAPAVSWLYHNEEVTTISDN---RFAMLANN 57
Query: 95 TLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVTSVEDTPPPIVQVGPSNQTLPLHSVA 154
L+I + K D G + C A + V V P + N T
Sbjct: 58 NLQILNINKSDEGIYRCEGRVEARGEIDFRDIIVI-VNVPPAISMPQKSFNATAERGEEM 116
Query: 155 FLPCQAVGSPPPHIRWYKNGNSLPPEDTRINVSSSGSLQI-DVLRDD 200
C+A GSP P I W++NG + + I S+ L + +++ D
Sbjct: 117 TFSCRASGSPEPAISWFRNGKLIEENEKYILKGSNTELTVRNIINSD 163
Score = 114 bits (287), Expect = 3e-31
Identities = 36/131 (27%), Positives = 61/131 (46%), Gaps = 7/131 (5%)
Query: 1 MITEVKKSDEGKYQCYVQNMV-GERETKPALLTVHAPPSFVV--RPQDQKVGLNGIASFQ 57
I + KSDEG Y+C + GE + + ++ V+ PP+ + + + +F
Sbjct: 60 QILNINKSDEGIYRCEGRVEARGEIDFRDIIVIVNVPPAISMPQKSFNATAERGEEMTFS 119
Query: 58 CVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVA 117
C A GSP P++ W + G + N ++ L ++ + D G +VC A + A
Sbjct: 120 CRASGSPEPAISWFRNGKLI---EENEK-YILKGSNTELTVRNIINSDGGPYVCRATNKA 175
Query: 118 GSTTVRAFLQV 128
G +AFLQV
Sbjct: 176 GEDEKQAFLQV 186
Score = 57.9 bits (140), Expect = 2e-10
Identities = 12/53 (22%), Positives = 20/53 (37%), Gaps = 1/53 (1%)
Query: 201 FRAEPKDTRVASGETALLECGPPKGQPEPTLHWKKNGQFIDLESSKRVSILGD 253
FR GE A + C P P + W + + + S R ++L +
Sbjct: 5 FREVVSPQEFKQGEDAEVVC-RVSSSPAPAVSWLYHNEEVTTISDNRFAMLAN 56
>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain,
vegfr-2, growth factor receptor, VEGF LI
hormone-signaling protein complex, angiogenesis; 3.20A
{Homo sapiens} PDB: 3v6b_R
Length = 772
Score = 157 bits (397), Expect = 2e-43
Identities = 44/218 (20%), Positives = 74/218 (33%), Gaps = 22/218 (10%)
Query: 2 ITEVKKSDEGKYQCYVQNMVGERETKPALLTVHAPPSFVVRPQDQKVGLNGIASFQCVAE 61
+ + Y+C N VG E V P ++P D + S C A+
Sbjct: 517 LVIQAANVSALYKCEAVNKVGRGERV-ISFHVTRGPEITLQP-DMQPTEQESVSLWCTAD 574
Query: 62 GSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQE------------------GTLRIQGVQK 103
S ++ W + G Q L + ++
Sbjct: 575 RSTFENLTWYKLGPQPLPIHVGELPTPVCKNLDTLWKLNATMFSNSTNDILIMELKNASL 634
Query: 104 EDAGFFVCSALSVAGSTTVRAFLQVTSVEDTPPPIVQVGPSNQTLPLHSVAFLPCQAVGS 163
+D G +VC A Q+T V + P + NQT + + C A G+
Sbjct: 635 QDQGDYVCLAQDRKTKKRHCVVRQLT-VLERVAPTITGNLENQTTSIGESIEVSCTASGN 693
Query: 164 PPPHIRWYKNGNSLPPEDTRINVSSSGSLQI-DVLRDD 200
PPP I W+K+ +L + + + +L I V ++D
Sbjct: 694 PPPQIMWFKDNETLVEDSGIVLKDGNRNLTIRRVRKED 731
Score = 141 bits (355), Expect = 8e-38
Identities = 41/290 (14%), Positives = 68/290 (23%), Gaps = 55/290 (18%)
Query: 1 MITEVKKSDEGKYQCYVQNMVGERETKPALLTVHAPP-----SFVVRPQDQKVGLNGIAS 55
I +V +D G Y+C+ + + + P S N
Sbjct: 89 TIPKVIGNDTGAYKCFYRETDLASVIY-VYVQDYRSPFIASVSDQHGVVYITENKNKTVV 147
Query: 56 FQCVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALS 115
C+ S L + + + GN + + I AG C A
Sbjct: 148 IPCLGSISNLNVSLCARYPEKRFVPDGN---RISWDSKKGFTIPSYMISYAGMVFCEAKI 204
Query: 116 VAGSTTVRAFLQVTSVEDTPPPIVQVGPSNQTLPLHSVAFLPCQAVGSPPPHIRWYKNGN 175
S ++ V V +V L + L C A I +
Sbjct: 205 NDESYQSIMYIVVV-VGYRIYDVVLSPSHGIELSVGEKLVLNCTARTELNVGIDFNWEYP 263
Query: 176 SLPPEDTRINV----------------------------------------SSSGSLQID 195
S + ++ + S +
Sbjct: 264 SSKHQHKKLVNRDLKTQSGSEMKKFLSTLTIDGVTRSDQGLYTCAASSGLMTKKNSTFVR 323
Query: 196 VLRDDF----RAEPKDTRVASGETALLECGPPKGQPEPTLHWKKNGQFID 241
V F GE + G P P + W KNG ++
Sbjct: 324 VHEKPFVAFGSGMESLVEATVGERVRIPA-KYLGYPPPEIKWYKNGIPLE 372
Score = 138 bits (348), Expect = 6e-37
Identities = 50/301 (16%), Positives = 81/301 (26%), Gaps = 52/301 (17%)
Query: 1 MITEVKKSDEGKYQCYVQNMVGERETKPALLTV---HAPPSFVVRPQDQKVGLNGIASFQ 57
I S G C + ++ ++ V + ++ +
Sbjct: 186 TIPSYMISYAGMVFCEAKINDESYQSIMYIVVVVGYRIYDVVLSPSHGIELSVGEKLVLN 245
Query: 58 CVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEG--------TLRIQGVQKEDAGFF 109
C A + + E TQ G TL I GV + D G +
Sbjct: 246 CTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLSTLTIDGVTRSDQGLY 305
Query: 110 VCSALSVAGSTTVRAFLQVTSVEDTPPPIVQVGPSNQTLPLHSVAFLPCQAVGSPPPHIR 169
C+A S + F++V E S + +P + +G PPP I+
Sbjct: 306 TCAASSGLMTKKNSTFVRV--HEKPFVAFGSGMESLVEATVGERVRIPAKYLGYPPPEIK 363
Query: 170 WYKNGNSLPPEDTRINVSSSGSLQI-DVLRDD---------------------------- 200
WYKNG L + + L I +V D
Sbjct: 364 WYKNGIPLES---NHTIKAGHVLTIMEVSERDTGNYTVILTNPISKEKQSHVVSLVVYVP 420
Query: 201 -----FRAEPKDTRVASGETALLECGPPKGQPEP-TLHWKKNGQFIDLESSKRVSILGDP 254
G T L C P P +HW + + + +P
Sbjct: 421 PQIGEKSLISPVDSYQYGTTQTLTC-TVYAIPPPHHIHWYWQLEEECANEPSQAVSVTNP 479
Query: 255 W 255
+
Sbjct: 480 Y 480
Score = 129 bits (326), Expect = 5e-34
Identities = 48/344 (13%), Positives = 91/344 (26%), Gaps = 99/344 (28%)
Query: 1 MITEVKKSDEGKYQCYVQNMVGE-RETKPALLTVHAPPSFVVRPQDQK---VGLNGIASF 56
I EV + D G Y + N + + +++ L V+ PP + +
Sbjct: 384 TIMEVSERDTGNYTVILTNPISKEKQSHVVSLVVYVPPQIGEKSLISPVDSYQYGTTQTL 443
Query: 57 QCVAEGSPLP-SVFWTQEGSQV-------------------------------LMFPGNA 84
C P P + W + + + N
Sbjct: 444 TCTVYAIPPPHHIHWYWQLEEECANEPSQAVSVTNPYPCEEWRSVEDFQGGNKIEVNKNQ 503
Query: 85 YGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVTSVEDTPPPIVQVGPS 144
+ + + + + + C A++ G VT P + + P
Sbjct: 504 FALIEGKNKTVSTLVIQAANVSALYKCEAVNKVGRGERVISFHVTR-----GPEITLQPD 558
Query: 145 NQTLPLHSVAFLPCQAVGSPPPHIRWYKNGNSLPPEDT---------------------- 182
Q SV+ L C A S ++ WYK G P
Sbjct: 559 MQPTEQESVS-LWCTADRSTFENLTWYKLGPQPLPIHVGELPTPVCKNLDTLWKLNATMF 617
Query: 183 RINVSSSGSLQI-DVLRDD--------------------------------FRAEPKDTR 209
+ + +++ + D ++
Sbjct: 618 SNSTNDILIMELKNASLQDQGDYVCLAQDRKTKKRHCVVRQLTVLERVAPTITGNLENQT 677
Query: 210 VASGETALLECGPPKGQPEPTLHWKKNGQFIDLESSKRVSILGD 253
+ GE+ + C G P P + W K+ + + E S V G+
Sbjct: 678 TSIGESIEVSC-TASGNPPPQIMWFKDNETLV-EDSGIVLKDGN 719
Score = 122 bits (306), Expect = 2e-31
Identities = 37/297 (12%), Positives = 67/297 (22%), Gaps = 46/297 (15%)
Query: 8 SDEGKYQCYVQNMVGERETKPALLTVHAPPSFVVRPQDQKVGLNGIASFQCVAEGSPLPS 67
+ C +L P ++ + N C +
Sbjct: 7 LAVALWLCVETRAASVGLPSVSL----DLPRLSIQKDILTIKANTTLQITCRGQ----RD 58
Query: 68 VFWTQEGSQVLMFPGNAYGHLH-VTQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRAFL 126
+ W +Q TL I V D G + C ++ + ++
Sbjct: 59 LDWLWPNNQSGSEQRVEVTECSDGLFCKTLTIPKVIGNDTGAYKCFYRETDLASVIYVYV 118
Query: 127 QVTSVEDTPPPIVQVGPSNQTLPLHSVAFLPCQAVGSPPPHIRWYKNGNS-LPPEDTRIN 185
Q Q G T + +PC S + P+ RI+
Sbjct: 119 QDYRSPFIASVSDQHGVVYITENKNKTVVIPCLGSISNLNVSLCARYPEKRFVPDGNRIS 178
Query: 186 VSSSGSLQI-DVLRDD--------------------------------FRAEPKDTRVAS 212
S I + + ++
Sbjct: 179 WDSKKGFTIPSYMISYAGMVFCEAKINDESYQSIMYIVVVVGYRIYDVVLSPSHGIELSV 238
Query: 213 GETALLECGPPKGQPEPTLHWKKNGQFIDLESSKRVSILGDPWFDSRRSRSIFGSVL 269
GE +L C + + + + + K V+ D S F S L
Sbjct: 239 GEKLVLNC-TARTELNVGIDFNWEYPSSKHQHKKLVN--RDLKTQSGSEMKKFLSTL 292
Score = 119 bits (300), Expect = 1e-30
Identities = 39/229 (17%), Positives = 67/229 (29%), Gaps = 16/229 (6%)
Query: 2 ITEVKKSDEGKYQCYVQNMVGERETKPALLTVHAPPSFVV---RPQDQKVGLNGIASFQC 58
I V +SD+G Y C + + ++ + VH P + +
Sbjct: 294 IDGVTRSDQGLYTCAASSGLMTKKNS-TFVRVHEKPFVAFGSGMESLVEATVGERVRIPA 352
Query: 59 VAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAG 118
G P P + W + G + N + L I V + D G + +
Sbjct: 353 KYLGYPPPEIKWYKNGIPL---ESNHT----IKAGHVLTIMEVSERDTGNYTVILTNPIS 405
Query: 119 STTVRAFLQVTSVEDTPPPIVQ--VGPSNQTLPLHSVAFLPCQAVGSPPP-HIRWYKNGN 175
+ + PP I + + + + L C PPP HI WY
Sbjct: 406 KEKQSHVVSLVVYV--PPQIGEKSLISPVDSYQYGTTQTLTCTVYAIPPPHHIHWYWQLE 463
Query: 176 SLPPEDTRINVSSSGSLQIDVLRDDFRAEPKDTRVASGETALLECGPPK 224
+ VS + + R + + + L G K
Sbjct: 464 EECANEPSQAVSVTNPYPCEEWRSVEDFQGGNKIEVNKNQFALIEGKNK 512
Score = 107 bits (269), Expect = 2e-26
Identities = 29/137 (21%), Positives = 52/137 (37%), Gaps = 7/137 (5%)
Query: 2 ITEVKKSDEGKYQCYVQNMVGERETKPAL---LTVHAPPSFVVRPQDQKVGLNGIASFQC 58
+ D+G Y C Q+ ++ + P+ ++Q + C
Sbjct: 629 LKNASLQDQGDYVCLAQDRKTKKRHCVVRQLTVLERVAPTITGNLENQTTSIGESIEVSC 688
Query: 59 VAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAG 118
A G+P P + W ++ ++ G + L I+ V+KED G + C A SV G
Sbjct: 689 TASGNPPPQIMWFKDNETLV----EDSGIVLKDGNRNLTIRRVRKEDEGLYTCQACSVLG 744
Query: 119 STTVRAFLQVTSVEDTP 135
V AF + ++
Sbjct: 745 CAKVEAFFIIEGAQEKT 761
Score = 67.5 bits (164), Expect = 8e-13
Identities = 19/194 (9%), Positives = 42/194 (21%), Gaps = 50/194 (25%)
Query: 98 IQGVQKEDAGFFVCSALSVAGSTTVRAFLQVTSVEDTPPPIVQVGPSNQTLPLHSVAFLP 157
+Q ++C A L P + + T+ ++ +
Sbjct: 1 MQSKVLLAVALWLCVETRAASVGLPSVSLD--------LPRLSIQKDILTIKANTTLQIT 52
Query: 158 CQAVGSPPPHIRWYKNGNSLPPEDTRINVSSSG----SLQID------------------ 195
C+ G W N + + S G +L I
Sbjct: 53 CR--GQRDLDWLWPNNQSGSEQ-RVEVTECSDGLFCKTLTIPKVIGNDTGAYKCFYRETD 109
Query: 196 ----------------VLRDDFRAEPKDTRVASGETALLECGPPKGQPEPTLHWKKNGQF 239
+ + +T ++ C +L + +
Sbjct: 110 LASVIYVYVQDYRSPFIASVSDQHGVVYITENKNKTVVIPCLGSISNLNVSLCARYPEKR 169
Query: 240 IDLESSKRVSILGD 253
+ R+S
Sbjct: 170 F-VPDGNRISWDSK 182
Score = 45.9 bits (108), Expect = 1e-05
Identities = 10/46 (21%), Positives = 18/46 (39%), Gaps = 1/46 (2%)
Query: 1 MITEVKKSDEGKYQCYVQNMVGERETKPALLTVHAPPSFVVRPQDQ 46
I V+K DEG Y C +++G + + A + +
Sbjct: 723 TIRRVRKEDEGLYTCQACSVLGCAKVE-AFFIIEGAQEKTNLERTH 767
>2a38_A Titin; Z1Z2, structural protein; 2.00A {Homo sapiens} PDB: 1ya5_A
2f8v_A
Length = 194
Score = 146 bits (369), Expect = 2e-43
Identities = 41/174 (23%), Positives = 67/174 (38%), Gaps = 8/174 (4%)
Query: 31 LTVHAPPSFVVRPQDQKVGLNGIASFQCVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHV 90
+T P+F Q V A+F+ G P+P V W ++G +
Sbjct: 1 MTTQ-APTFTQPLQSVVVLEGSTATFEAHISGFPVPEVSWFRDGQVISTSTLPGVQISFS 59
Query: 91 TQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVTSVEDTPPPIVQVGPSNQTLPL 150
L I V K ++G + A + +G T A L V +T PP + T+
Sbjct: 60 DGRAKLTIPAVTKANSGRYSLKATNGSGQATSTAELLV--KAETAPPNFVQRLQSMTVRQ 117
Query: 151 HSVAFLPCQAVGSPPPHIRWYKNGNSLPPEDTRINVSSSG---SLQI-DVLRDD 200
S L + G P P +++Y++G + +S G SL I + +D
Sbjct: 118 GSQVRLQVRVTGIPTPVVKFYRDGAEIQS-SLDFQISQEGDLYSLLIAEAYPED 170
Score = 121 bits (306), Expect = 4e-34
Identities = 38/134 (28%), Positives = 58/134 (43%), Gaps = 12/134 (8%)
Query: 1 MITEVKKSDEGKYQCYVQNMVGERETKPALLTVH---APPSFVVRPQDQKVGLNGIASFQ 57
I V K++ G+Y N G+ + A L V APP+FV R Q V Q
Sbjct: 66 TIPAVTKANSGRYSLKATNGSGQATST-AELLVKAETAPPNFVQRLQSMTVRQGSQVRLQ 124
Query: 58 CVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEG---TLRIQGVQKEDAGFFVCSAL 114
G P P V + ++G+++ + ++QEG +L I ED+G + +A
Sbjct: 125 VRVTGIPTPVVKFYRDGAEI-----QSSLDFQISQEGDLYSLLIAEAYPEDSGTYSVNAT 179
Query: 115 SVAGSTTVRAFLQV 128
+ G T A L V
Sbjct: 180 NSVGRATSTAELLV 193
Score = 49.3 bits (118), Expect = 2e-07
Identities = 15/54 (27%), Positives = 20/54 (37%), Gaps = 1/54 (1%)
Query: 201 FRAEPKDTRVASGETALLECGPPKGQPEPTLHWKKNGQFIDLESSKRVSILGDP 254
F + V G TA E G P P + W ++GQ I + V I
Sbjct: 8 FTQPLQSVVVLEGSTATFEA-HISGFPVPEVSWFRDGQVISTSTLPGVQISFSD 60
>2yd1_A Tyrosine-protein phosphatase LAR; hydrolase; 1.80A {Drosophila
melanogaster} PDB: 3pxj_A
Length = 212
Score = 146 bits (369), Expect = 3e-43
Identities = 49/177 (27%), Positives = 81/177 (45%), Gaps = 12/177 (6%)
Query: 32 TVHAPPSFVVRPQDQKVGLNGIASFQCVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVT 91
T PP + +PQ+Q V + G+ASF C A G P PS+ W + G +V + +
Sbjct: 2 TGAHPPEIIRKPQNQGVRVGGVASFYCAARGDPPPSIVWRKNGKKVSGTQSR---YTVLE 58
Query: 92 QEGTLRIQGVQ----KEDAGFFVCSALSVAGST-TVRAFLQVTSVEDTP--PPIVQVGPS 144
Q G + I ++ D + C A + G + A L + + TP P++ GP
Sbjct: 59 QPGGISILRIEPVRAGRDDAPYECVAENGVGDAVSADATLTIYEGDKTPAGFPVITQGPG 118
Query: 145 NQTLPLHSVAFLPCQAVGSPPPHIRWYKNGNSLPPEDTRINVSSSGSLQI-DVLRDD 200
+ + + + C+A+G+P P+I W KN + + R G LQI + +D
Sbjct: 119 TRVIEVGHTVLMTCKAIGNPTPNIYWIKNQTKVDMSNPRY-SLKDGFLQIENSREED 174
Score = 108 bits (272), Expect = 8e-29
Identities = 33/155 (21%), Positives = 64/155 (41%), Gaps = 19/155 (12%)
Query: 1 MITEVKK-SDEGKYQCYVQNMVGERETKPALLTVH-------APPSFVVRPQDQKVGLNG 52
I V+ D+ Y+C +N VG+ + A LT++ P P + + +
Sbjct: 67 RIEPVRAGRDDAPYECVAENGVGDAVSADATLTIYEGDKTPAGFPVITQGPGTRVIEVGH 126
Query: 53 IASFQCVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCS 112
C A G+P P+++W + ++V M + ++G L+I+ ++ED G + C
Sbjct: 127 TVLMTCKAIGNPTPNIYWIKNQTKVDMSNP-----RYSLKDGFLQIENSREEDQGKYECV 181
Query: 113 ALSVAGSTTVRA-FLQVTSVEDTPPPIVQVGPSNQ 146
A + G+ +A L V + +
Sbjct: 182 AENSMGTEHSKATNLYVKV-----RRVGTKHHHHH 211
Score = 97.2 bits (242), Expect = 2e-24
Identities = 38/160 (23%), Positives = 51/160 (31%), Gaps = 45/160 (28%)
Query: 136 PPIVQVGPSNQTLPLHSVAFLPCQAVGSPPPHIRWYKNGNSLPPEDTRI----------- 184
PP + P NQ + + VA C A G PPP I W KNG + +R
Sbjct: 6 PPEIIRKPQNQGVRVGGVASFYCAARGDPPPSIVWRKNGKKVSGTQSRYTVLEQPGGISI 65
Query: 185 -------------------------NVSSSGSLQIDVLRDD------FRAEPKDTRVASG 213
VS+ +L I P + G
Sbjct: 66 LRIEPVRAGRDDAPYECVAENGVGDAVSADATLTIYEGDKTPAGFPVITQGPGTRVIEVG 125
Query: 214 ETALLECGPPKGQPEPTLHWKKNGQFIDLESSKRVSILGD 253
T L+ C G P P ++W KN +D+ S L D
Sbjct: 126 HTVLMTC-KAIGNPTPNIYWIKNQTKVDM--SNPRYSLKD 162
>2iep_A Muscle-specific kinase receptor; beta-sandwich, signaling
protein,transferase; 2.21A {Rattus norvegicus}
Length = 192
Score = 142 bits (360), Expect = 4e-42
Identities = 42/170 (24%), Positives = 71/170 (41%), Gaps = 11/170 (6%)
Query: 33 VHAPPSFVVRPQDQKVGLNGIASFQCVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQ 92
+ P + + +A+F C E P P + WT+ + +F + +
Sbjct: 4 LPKAPVITTPLETVDALVEEVATFMCAVESYPQPEISWTRNKILIKLFDT----RYSIRE 59
Query: 93 EG-TLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVTSVEDTPPPIVQVGPSNQTLPLH 151
G L I V+ D G + C+A + G + P + P N +
Sbjct: 60 NGQLLTILSVEDSDDGIYCCTANNGVGGAVESCGALQVKM----KPKITRPPINVKIIEG 115
Query: 152 SVAFLPCQAVGSPPPHIRWYKNGNSLPPEDTRINVSSSGSLQI-DVLRDD 200
A LPC +G+P P + W K ++L ++RI V SGSL+I +V ++D
Sbjct: 116 LKAVLPCTTMGNPKPSVSWIKGDSALRE-NSRIAVLESGSLRIHNVQKED 164
Score = 127 bits (322), Expect = 2e-36
Identities = 41/129 (31%), Positives = 56/129 (43%), Gaps = 6/129 (4%)
Query: 1 MITEVKKSDEGKYQCYVQNMVGERETKPALLTVHAPPSFVVRPQDQKVGLNGIASFQCVA 60
I V+ SD+G Y C N VG L V P P + K+ A C
Sbjct: 65 TILSVEDSDDGIYCCTANNGVGGAVESCGALQVKMKPKITRPPINVKIIEGLKAVLPCTT 124
Query: 61 EGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGS- 119
G+P PSV W + S + + V + G+LRI VQKEDAG + C A + G+
Sbjct: 125 MGNPKPSVSWIKGDSAL-----RENSRIAVLESGSLRIHNVQKEDAGQYRCVAKNSLGTA 179
Query: 120 TTVRAFLQV 128
+ L+V
Sbjct: 180 YSKLVKLEV 188
Score = 109 bits (273), Expect = 3e-29
Identities = 30/149 (20%), Positives = 49/149 (32%), Gaps = 34/149 (22%)
Query: 136 PPIVQVGPSNQTLPLHSVAFLPCQAVGSPPPHIRWYKNGNSLPPEDTRINVSSSGS-LQI 194
P++ + VA C P P I W +N + DTR ++ +G L I
Sbjct: 7 APVITTPLETVDALVEEVATFMCAVESYPQPEISWTRNKILIKLFDTRYSIRENGQLLTI 66
Query: 195 -DVLRDD-----------------------------FRAEPKDTRVASGETALLECGPPK 224
V D P + ++ G A+L C
Sbjct: 67 LSVEDSDDGIYCCTANNGVGGAVESCGALQVKMKPKITRPPINVKIIEGLKAVLPC-TTM 125
Query: 225 GQPEPTLHWKKNGQFIDLESSKRVSILGD 253
G P+P++ W K L + R+++L
Sbjct: 126 GNPKPSVSWIKGDS--ALRENSRIAVLES 152
Score = 50.1 bits (120), Expect = 1e-07
Identities = 12/36 (33%), Positives = 18/36 (50%)
Query: 1 MITEVKKSDEGKYQCYVQNMVGERETKPALLTVHAP 36
I V+K D G+Y+C +N +G +K L V
Sbjct: 156 RIHNVQKEDAGQYRCVAKNSLGTAYSKLVKLEVEVF 191
>2nzi_A Titin; IG-domain, FNIII-domain, transferase; 2.90A {Homo sapiens}
Length = 305
Score = 144 bits (364), Expect = 2e-41
Identities = 34/169 (20%), Positives = 54/169 (31%), Gaps = 4/169 (2%)
Query: 36 PPSFVVRPQDQKVGLNGIASFQCVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGT 95
P F ++ V A+ C G P P V W ++G +++
Sbjct: 4 APHFKEELRNLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGGYHQ 63
Query: 96 LRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVTSVEDTPPPIVQVGPSNQTLPLHSVAF 155
L I V +DA + A + GS + A L+V P G V
Sbjct: 64 LIIASVTDDDATVYQVRATNQGGSVSGTASLEVEVPAKIHLPKTLEGMGAVHALRGEVVS 123
Query: 156 LPCQAVGSPPPHIRWYKNGNSLPPEDTRINVSSSGS---LQID-VLRDD 200
+ G P P I W K + + + + + + V R D
Sbjct: 124 IKIPFSGKPDPVITWQKGQDLIDNNGHYQVIVTRSFTSLVFPNGVERKD 172
Score = 98.7 bits (246), Expect = 3e-24
Identities = 38/147 (25%), Positives = 54/147 (36%), Gaps = 12/147 (8%)
Query: 2 ITEVKKSDEGKYQCYVQNMVGERETKPALLTVHAP-----PSFVVRPQDQKVGLNGIASF 56
I V D YQ N G A L V P P + + S
Sbjct: 66 IASVTDDDATVYQVRATNQGGSVSGT-ASLEVEVPAKIHLPKTLEGMGAVHALRGEVVSI 124
Query: 57 QCVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGT--LRIQGVQKEDAGFFVCSAL 114
+ G P P + W + + N + + VT+ T + GV+++DAGF+V A
Sbjct: 125 KIPFSGKPDPVITWQKGQDLI---DNNGHYQVIVTRSFTSLVFPNGVERKDAGFYVVCAK 181
Query: 115 SVAGSTTVRAFLQVTSVEDTPPPIVQV 141
+ G L V V D PP V+V
Sbjct: 182 NRFGIDQKTVELDVADVPD-PPRGVKV 207
Score = 49.0 bits (117), Expect = 5e-07
Identities = 13/47 (27%), Positives = 21/47 (44%), Gaps = 1/47 (2%)
Query: 200 DFRAEPKDTRVASGETALLECGPPKGQPEPTLHWKKNGQFIDLESSK 246
F+ E ++ V A L C G P+P + W + G+ I + K
Sbjct: 6 HFKEELRNLNVRYQSNATLVC-KVTGHPKPIVKWYRQGKEIIADGLK 51
Score = 38.2 bits (89), Expect = 0.002
Identities = 9/38 (23%), Positives = 13/38 (34%), Gaps = 1/38 (2%)
Query: 1 MITEVKKSDEGKYQCYVQNMVGERETKPALLTVHAPPS 38
V++ D G Y +N G + L V P
Sbjct: 164 FPNGVERKDAGFYVVCAKNRFGIDQKT-VELDVADVPD 200
>2yd6_A PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sapiens} PDB:
2yd7_A 2yd2_A 2yd3_A 2yd4_A* 2yd8_A* 2yd5_A* 3pxh_A
Length = 212
Score = 140 bits (355), Expect = 4e-41
Identities = 50/181 (27%), Positives = 77/181 (42%), Gaps = 16/181 (8%)
Query: 32 TVHAPPSFVVRPQDQKVGLNGIASFQCVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVT 91
T PP F P DQ G+ASF C A G P P + W ++G +V +
Sbjct: 2 TGETPPRFTRTPVDQTGVSGGVASFICQATGDPRPKIVWNKKGKKVSNQR----FEVIEF 57
Query: 92 QEGT---LRIQGVQ-KEDAGFFVCSALSVAGSTTVRAFLQVTSVEDTP--PPIVQVGPSN 145
+G+ LRIQ ++ D + C A + G +V L V + P P + +GP
Sbjct: 58 DDGSGSVLRIQPLRTPRDEAIYECVASNNVGEISVSTRLTVLREDQIPRGFPTIDMGPQL 117
Query: 146 QTLPLHSVAFLPCQAVGSPPPHIRWYKNGNSLPPED-----TRINVSSSGSLQI-DVLRD 199
+ + A + C A G+P P I W+K+ + + ++ S G+LQI
Sbjct: 118 KVVERTRTATMLCAASGNPDPEITWFKDFLPVDTSNNNGRIKQLRSESIGALQIEQSEES 177
Query: 200 D 200
D
Sbjct: 178 D 178
Score = 112 bits (283), Expect = 2e-30
Identities = 38/145 (26%), Positives = 58/145 (40%), Gaps = 11/145 (7%)
Query: 1 MITEVK-KSDEGKYQCYVQNMVGERETKPALLTVHA-------PPSFVVRPQDQKVGLNG 52
I ++ DE Y+C N VGE LTV P+ + PQ + V
Sbjct: 66 RIQPLRTPRDEAIYECVASNNVGEISVS-TRLTVLREDQIPRGFPTIDMGPQLKVVERTR 124
Query: 53 IASFQCVAEGSPLPSVFWTQEGSQVLMFPGNA-YGHLHVTQEGTLRIQGVQKEDAGFFVC 111
A+ C A G+P P + W ++ V N L G L+I+ ++ D G + C
Sbjct: 125 TATMLCAASGNPDPEITWFKDFLPVDTSNNNGRIKQLRSESIGALQIEQSEESDQGKYEC 184
Query: 112 SALSVAGST-TVRAFLQVTSVEDTP 135
A + AG+ + A L V +
Sbjct: 185 VATNSAGTRYSAPANLYVRGTKHHH 209
Score = 91.4 bits (227), Expect = 2e-22
Identities = 37/162 (22%), Positives = 53/162 (32%), Gaps = 43/162 (26%)
Query: 133 DTPPPIVQVGPSNQTLPLHSVAFLPCQAVGSPPPHIRWYKNGNSLPPEDTRINVSSSGS- 191
+TPP + P +QT VA CQA G P P I W K G + + + GS
Sbjct: 4 ETPPRFTRT-PVDQTGVSGGVASFICQATGDPRPKIVWNKKGKKVSNQRFEVIEFDDGSG 62
Query: 192 --LQIDVLRD-------------------------------------DFRAEPKDTRVAS 212
L+I LR P+ V
Sbjct: 63 SVLRIQPLRTPRDEAIYECVASNNVGEISVSTRLTVLREDQIPRGFPTIDMGPQLKVVER 122
Query: 213 GETALLECGPPKGQPEPTLHWKKNGQFIDL-ESSKRVSILGD 253
TA + C G P+P + W K+ +D ++ R+ L
Sbjct: 123 TRTATMLC-AASGNPDPEITWFKDFLPVDTSNNNGRIKQLRS 163
>2y25_A Myomesin; structural protein, sarcomere, M-BAND,
immunoglobulin-like D; 3.50A {Homo sapiens}
Length = 317
Score = 142 bits (360), Expect = 1e-40
Identities = 42/229 (18%), Positives = 69/229 (30%), Gaps = 33/229 (14%)
Query: 2 ITEVKKSDEGKYQCYVQNMVGERETKPALLTVHAPPSFVVRPQDQKVGLNGIASFQCVAE 61
ITE K D G Y+ +++ G+ +++ L A ++ + Q AE
Sbjct: 65 ITEFSKKDAGIYEVILKDDRGKDKSR-LKLVDEAFKELMMEVCKKIALSATDLKIQSTAE 123
Query: 62 GSPL----------PSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVC 111
G L V W+ GS + + ++ L+I D G +V
Sbjct: 124 GIQLYSFVTYYVEDLKVNWSHNGSAIR--YSDRVKTGVTGEQIWLQINEPTPNDKGKYVM 181
Query: 112 SALSVAGSTTVRAFLQVTS----------------VEDTPPPIVQVGPSNQTLPLHSVAF 155
L + E ++ P T+
Sbjct: 182 ELFDGKTGHQKTVDLSGQAYDEAYAEFQRLKQAAIAEKNRARVLGGLPDVVTIQEGKALN 241
Query: 156 LPCQAVGSPPPHIRWYKNGNSLPPED---TRINVSSSGSLQI-DVLRDD 200
L C G PPP + W KN +L +D + + I V D
Sbjct: 242 LTCNVWGDPPPEVSWLKNEKALASDDHCNLKFEAGRTAYFTINGVSTAD 290
Score = 121 bits (306), Expect = 8e-33
Identities = 44/285 (15%), Positives = 78/285 (27%), Gaps = 72/285 (25%)
Query: 31 LTVHAPPSFVVRPQDQKVGLNGIASFQCVAEGS-PLPSVFWTQEGSQVLMFPGNAYGHLH 89
+ P FV + V +C + W ++ ++ + H
Sbjct: 2 IDPFTGPHFVEYLSWE-VTGECNVLLKCKVANIKKETHIVWYKDEREI------SVDEKH 54
Query: 90 VTQEG--TLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVTSVED-TPPPIVQVGPSNQ 146
++G TL I K+DAG + G R L + ++ ++ S
Sbjct: 55 DFKDGICTLLITEFSKKDAGIYEVILKDDRGKDKSRLKLVDEAFKELMMEVCKKIALSAT 114
Query: 147 TLPLHSVA----FLPCQAVGSPPPHIRWYKNGNSLPPEDTRINVSSSG---SLQI-DVLR 198
L + S A + W NG+++ D R+ +G LQI +
Sbjct: 115 DLKIQSTAEGIQLYSFVTYYVEDLKVNWSHNGSAIRYSD-RVKTGVTGEQIWLQINEPTP 173
Query: 199 DD-------------------------------------------------FRAEPKDTR 209
+D P
Sbjct: 174 NDKGKYVMELFDGKTGHQKTVDLSGQAYDEAYAEFQRLKQAAIAEKNRARVLGGLPDVVT 233
Query: 210 VASGETALLECGPPKGQPEPTLHWKKNGQFIDLESSKRVSILGDP 254
+ G+ L C G P P + W KN + L S ++ +
Sbjct: 234 IQEGKALNLTC-NVWGDPPPEVSWLKNEK--ALASDDHCNLKFEA 275
Score = 96.1 bits (239), Expect = 2e-23
Identities = 24/148 (16%), Positives = 42/148 (28%), Gaps = 21/148 (14%)
Query: 1 MITEVKKSDEGKYQCYVQNMVGERET--------------------KPALLTVHAPPSFV 40
I E +D+GKY + + + + A+ +
Sbjct: 167 QINEPTPNDKGKYVMELFDGKTGHQKTVDLSGQAYDEAYAEFQRLKQAAIAEKNRARVLG 226
Query: 41 VRPQDQKVGLNGIASFQCVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQG 100
P + + C G P P V W + + L + + I G
Sbjct: 227 GLPDVVTIQEGKALNLTCNVWGDPPPEVSWLKNE-KALASDDHCNLKFEAGRTAYFTING 285
Query: 101 VQKEDAGFFVCSALSVAGSTTVRAFLQV 128
V D+G + + GS T + V
Sbjct: 286 VSTADSGKYGLVVKNKYGSETSDFTVSV 313
>1ry7_B FGFR-3, fibroblast growth factor receptor 3; FGF-FGFR complex, beta
trefoil, IG domain, growth factor/growth factor receptor
complex; 3.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4
Length = 334
Score = 142 bits (360), Expect = 1e-40
Identities = 43/240 (17%), Positives = 68/240 (28%), Gaps = 41/240 (17%)
Query: 1 MITEVKKSDEGKYQCYVQNMVGE--------------------RETKPALLTVHAPPSFV 40
+ D G Y C + + P +
Sbjct: 64 QVLNASHEDSGAYSCRQRLTQRVLCHFSVRVTDAPSSGDDEDGEDEAEDTGVDTGAPYWT 123
Query: 41 ----VRPQDQKVGLNGIASFQCVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTL 96
+ + V F+C A G+P PS+ W + G + G Q+ +L
Sbjct: 124 RPERMDKKLLAVPAANTVRFRCPAAGNPTPSISWLKNGRE-FRGEHRIGGIKLRHQQWSL 182
Query: 97 RIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVTSVEDTPPPIVQVGPSNQTLPLHSVAFL 156
++ V D G + C + GS L V P + P+NQT L S
Sbjct: 183 VMESVVPSDRGNYTCVVENKFGSIRQTYTLDVLERSPHRPILQAGLPANQTAVLGSDVEF 242
Query: 157 PCQAVGSPPPHIRWYKNG---------------NSLPPEDTRINVSSSGSLQI-DVLRDD 200
C+ PHI+W K+ L L + +V +D
Sbjct: 243 HCKVYSDAQPHIQWLKHVEVNGSKVGPDGTPYVTVLKTAGANTTDKELEVLSLHNVTFED 302
Score = 124 bits (312), Expect = 2e-33
Identities = 41/290 (14%), Positives = 72/290 (24%), Gaps = 69/290 (23%)
Query: 34 HAPPSFVVRPQDQKVGLNGIASFQCVAE-GSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQ 92
P + + G C G P+ W ++G+ + +
Sbjct: 6 EVPGPEPGQQEQLVFGSGDAVELSCPPPGGGPMGPTVWVKDGTGL------VPSERVLVG 59
Query: 93 EGTLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQV-----------------TSVEDTP 135
L++ ED+G + C + T V+
Sbjct: 60 PQRLQVLNASHEDSGAYSCRQRLTQRVLCHFSVRVTDAPSSGDDEDGEDEAEDTGVDTGA 119
Query: 136 PPIVQ---VGPSNQTLPLHSVAFLPCQAVGSPPPHIRWYKNGNSLPPEDT---RINVSSS 189
P + + +P + C A G+P P I W KNG E
Sbjct: 120 PYWTRPERMDKKLLAVPAANTVRFRCPAAGNPTPSISWLKNGREFRGEHRIGGIKLRHQQ 179
Query: 190 GSLQI-DVLRDD---------------------------------FRAEPKDTRVASGET 215
SL + V+ D P + G
Sbjct: 180 WSLVMESVVPSDRGNYTCVVENKFGSIRQTYTLDVLERSPHRPILQAGLPANQTAVLGSD 239
Query: 216 ALLECGPPKGQPEPTLHWKK----NGQFIDLESSKRVSILGDPWFDSRRS 261
C +P + W K NG + + + V++L ++
Sbjct: 240 VEFHC-KVYSDAQPHIQWLKHVEVNGSKVGPDGTPYVTVLKTAGANTTDK 288
Score = 117 bits (295), Expect = 3e-31
Identities = 35/156 (22%), Positives = 52/156 (33%), Gaps = 20/156 (12%)
Query: 1 MITEVKKSDEGKYQCYVQNMVGERETKPALLTV-----HAPPSFVVRPQDQKVGLNGIAS 55
++ V SD G Y C V+N G L V H P P +Q L
Sbjct: 183 VMESVVPSDRGNYTCVVENKFGSIRQT-YTLDVLERSPHRPILQAGLPANQTAVLGSDVE 241
Query: 56 FQCVAEGSPLPSVFW-----------TQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKE 104
F C P + W +G+ + A + + L + V E
Sbjct: 242 FHCKVYSDAQPHIQWLKHVEVNGSKVGPDGTPYVTVLKTAGANTTDKELEVLSLHNVTFE 301
Query: 105 DAGFFVCSALSVAGSTTVRAFLQVTSVEDTPPPIVQ 140
DAG + C A + G + A+L V +V+
Sbjct: 302 DAGEYTCLAGNSIGFSHHSAWLVVL---PAEEELVE 334
>3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical
bundle cytokine, hematopoietic cytokine-receptor
complex, cell surface, EXTR complex; 7.80A {Homo
sapiens}
Length = 527
Score = 145 bits (368), Expect = 2e-40
Identities = 33/293 (11%), Positives = 75/293 (25%), Gaps = 40/293 (13%)
Query: 2 ITEVKKSDEGKYQCYVQNMVGERETKPALLTVHAPPSFVVRPQDQKVGLNGIASFQCVAE 61
+ Y ++ E L + V +V ++ + Q + +
Sbjct: 19 NNDSSVGKSSSYPMVSESP----EDLGCALRPQSSG-TVYEAAAVEVDVSASITLQVLVD 73
Query: 62 GSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTT 121
S W + S + + L ++ I + + AG ++ S A + T
Sbjct: 74 APGNISCLWVFKHSSL---NCQPHFDLQNRGVVSMVILKMTETQAGEYLLFIQSEATNYT 130
Query: 122 VRAFLQVTSVEDTPPPIVQVGPSNQTLPLHSVAFLPCQAVGSPPPHIRWYKNGNSLPPE- 180
+ + + + + + + A L C + P P + W +
Sbjct: 131 ILFTVSIRN-----TLLYTLRRPYFRKMENQDA-LVCISESVPEPIVEWVLCDSQGESCK 184
Query: 181 DTRINVSSSGSLQID-------------------------VLRDDFRAEPKDTRVASGET 215
+ V + L + + GE
Sbjct: 185 EESPAVVKKEEKVLHELFGTDIRCCARNELGRECTRLFTIDLNQTPQTTLPQLFLKVGEP 244
Query: 216 ALLECGPPKGQPEPTLHWKKNGQFIDLESSKRVSILGDPWFDSRRSRSIFGSV 268
+ C L W+ + ++ + +S R + SV
Sbjct: 245 LWIRCKAVHVNHGFGLTWELENKALEEGNYFEMSTYSTNRTMIRILFAFVSSV 297
Score = 132 bits (333), Expect = 2e-35
Identities = 36/281 (12%), Positives = 80/281 (28%), Gaps = 52/281 (18%)
Query: 1 MITEVKKSDEGKYQCYVQNMVGERETKPALLTVHAPPSFVVRPQDQKVGLNGIASFQCVA 60
+I ++ ++ G+Y ++Q+ T +++ + +R + + + C++
Sbjct: 106 VILKMTETQAGEYLLFIQSEATN-YTILFTVSIRNTLLYTLRRPYFRK-MENQDALVCIS 163
Query: 61 EGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGST 120
E P P V W SQ + + + + + C A + G
Sbjct: 164 ESVPEPIVEWVLCDSQGESCKEESPAVV------KKEEKVLHELFGTDIRCCARNELGRE 217
Query: 121 TVRAFLQVTSVEDTPPPIVQVGPSNQTLPLHSVAFLPCQAVG-SPPPHIRWYKNGNSLPP 179
R F +++ P L + ++ C+AV + + W +L
Sbjct: 218 CTRLF----TIDLNQTPQTT--LPQLFLKVGEPLWIRCKAVHVNHGFGLTWELENKALEE 271
Query: 180 ED--------TRINVSSSGSLQI-DVLRDD---------------------------FRA 203
+ T + + V R+D
Sbjct: 272 GNYFEMSTYSTNRTMIRILFAFVSSVARNDTGYYTCSSSKHPSQSALVTIVEKGFINATN 331
Query: 204 EPKDTRVASGETALLECGPPKGQPEPTLHWKKNGQFIDLES 244
+D + E K P+ W + + E
Sbjct: 332 SSEDYEIDQYEEFCFSV-RFKAYPQIRCTWTFSRKSFPCEQ 371
Score = 131 bits (331), Expect = 4e-35
Identities = 42/297 (14%), Positives = 89/297 (29%), Gaps = 45/297 (15%)
Query: 5 VKKSDEGKYQCYVQNMVGERETKPALLTVHAPPSFVVRPQDQKVGLNGIASFQC-VAEGS 63
+ + +C +N +G T+ + ++ P + KVG +C +
Sbjct: 198 LHELFGTDIRCCARNELGRECTRLFTIDLNQTPQTTLPQLFLKVGEP--LWIRCKAVHVN 255
Query: 64 PLPSVFWTQEGSQVL---MFPGNAYGHLHVTQE-GTLRIQGVQKEDAGFFVCSALSVAGS 119
+ W E + F + Y + V + D G++ CS+
Sbjct: 256 HGFGLTWELENKALEEGNYFEMSTYSTNRTMIRILFAFVSSVARNDTGYYTCSSSKHPSQ 315
Query: 120 TTVRAFLQVTSVEDTPPPIVQVGPSNQTLPLHSVAFLPCQAVGSPPPHIRWYKNGNSLPP 179
+ + ++ + + + + + P W + S P
Sbjct: 316 SAL------VTIVEKGFINATNSSEDYEIDQYEEFCFSVRFKAYPQIRCTWTFSRKSFPC 369
Query: 180 EDTRINVSSSGSLQI-DVLRDD-----FRAE-----------------PKDTRVASGETA 216
E ++ + S+ + F AE P+ +A +
Sbjct: 370 EQKGLD--NGYSISKFCNHKHQPGEYIFHAENDDAQFTKMFTLNIRRKPQV--LAEASAS 425
Query: 217 LLECGPPKGQPEPTLHWKKNGQFIDLESSKRVSILGDPWFDSRRSRSIFGSVLGALS 273
C G P P+ WKK D + I W + + +R +FG + + +
Sbjct: 426 QASC-FSDGYPLPSWTWKKCS---DKSPNCTEEITEGVW-NRKANRKVFGQWVSSST 477
Score = 124 bits (313), Expect = 1e-32
Identities = 30/222 (13%), Positives = 60/222 (27%), Gaps = 25/222 (11%)
Query: 1 MITEVKKSDEGKYQCYVQNMVGERETKPALLTVHAPPSF--VVRPQDQKVGLNGIASFQC 58
++ V ++D G Y C + AL+T+ +D ++ F
Sbjct: 293 FVSSVARNDTGYYTCSSSKHPS----QSALVTIVEKGFINATNSSEDYEIDQYEEFCFSV 348
Query: 59 VAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAG 118
+ P WT + ++ K G ++ A +
Sbjct: 349 RFKAYPQIRCTWTFSRKSFPC------EQKGLDNGYSISKFCNHKHQPGEYIFHAENDDA 402
Query: 119 STTVRAFLQVTSVEDTPPPIVQVGPSNQTLPLHSVAFLPCQAVGSPPPHIRWYKNGNSLP 178
T L + P ++ S + C + G P P W K + P
Sbjct: 403 QFTKMFTLNIRR----KPQVLAEA---------SASQASCFSDGYPLPSWTWKKCSDKSP 449
Query: 179 PEDTRINVSSSGSLQIDVLRDDFRAEPKDTRVASGETALLEC 220
I + + + + + L++C
Sbjct: 450 NCTEEITEGVWNRKANRKVFGQWVSSSTLNMSEAIKGFLVKC 491
Score = 97.8 bits (243), Expect = 4e-23
Identities = 23/159 (14%), Positives = 43/159 (27%), Gaps = 22/159 (13%)
Query: 2 ITEVKKSDEGKYQCYVQNMVGERETKPALLTVHAPPSFVVRPQDQKVGLNGIASFQCVAE 61
K G+Y + +N + L + P + + C ++
Sbjct: 382 KFCNHKHQPGEYIFHAENDDAQFTKM-FTLNIRRKPQVLAEASA--------SQASCFSD 432
Query: 62 GSPLPSVFWTQEGSQVLMFPG---------NAYGHLHVTQEGTLRIQGVQKEDAGFFVCS 112
G PLPS W + + A + + + + C
Sbjct: 433 GYPLPSWTWKKCSDKSPNCTEEITEGVWNRKANRKVFGQWVSSSTLNMSEAIKGFLVKCC 492
Query: 113 ALSVAGSTTVRAFLQVTSVEDTPPPIVQVGPSNQTLPLH 151
A + G++ L P P +Q G + H
Sbjct: 493 AYNSLGTSCETILLNSPG----PFPFIQDGGTKHHHHHH 527
Score = 71.7 bits (175), Expect = 3e-14
Identities = 16/189 (8%), Positives = 40/189 (21%), Gaps = 41/189 (21%)
Query: 95 TLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVTSVEDTPPPIVQVGPSNQTLPLHSVA 154
+ + + + S ++ V + + + +
Sbjct: 16 NHKNNDSSVGKSSSYPMVSESPEDLGC--------ALRPQSSGTV-YEAAAVEVDVSASI 66
Query: 155 FLPCQAVGSPPPHIRWYKNGNSLPPEDT-RINVSSSGSLQI-DVLRDD------------ 200
L W +SL + + S+ I +
Sbjct: 67 TLQVLVDAPGNISCLWVFKHSSLNCQPHFDLQNRGVVSMVILKMTETQAGEYLLFIQSEA 126
Query: 201 ----------------FRAEPKDTRVASGETALLECGPPKGQPEPTLHWKKNGQFIDLES 244
+ R + A L C + PEP + W +
Sbjct: 127 TNYTILFTVSIRNTLLYTLRRPYFRKMENQDA-LVC-ISESVPEPIVEWVLCDSQGESCK 184
Query: 245 SKRVSILGD 253
+ +++
Sbjct: 185 EESPAVVKK 193
Score = 43.1 bits (101), Expect = 6e-05
Identities = 7/46 (15%), Positives = 13/46 (28%), Gaps = 1/46 (2%)
Query: 1 MITEVKKSDEGKYQCYVQNMVGERETKPALLTVHAPPSFVVRPQDQ 46
+ + +C N +G LL P F+ +
Sbjct: 477 TLNMSEAIKGFLVKCCAYNSLGTSCET-ILLNSPGPFPFIQDGGTK 521
>1epf_A NCAM, protein (neural cell adhesion molecule); immunoglobulin fold,
glycoprotein; 1.85A {Rattus norvegicus} SCOP: b.1.1.4
b.1.1.4 PDB: 2ncm_A 3ncm_A
Length = 191
Score = 136 bits (345), Expect = 7e-40
Identities = 28/129 (21%), Positives = 45/129 (34%), Gaps = 3/129 (2%)
Query: 1 MITEVKKSDEGKYQCYVQNMVGERETKPALLTVHAPPSFVVRPQDQKVGLNGIASFQCVA 60
I D G Y+C V G + + + F P Q+ A C
Sbjct: 65 TIYNANIDDAGIYKCVVTAEDGTQSEATVNVKIFQKLMFKNAPTPQEFKEGEDAVIVCDV 124
Query: 61 EGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGST 120
S P++ W +G V++ V L+I+G++K D G + C +A
Sbjct: 125 VSSLPPTIIWKHKGRDVILKKD---VRFIVLSNNYLQIRGIKKTDEGTYRCEGRILARGE 181
Query: 121 TVRAFLQVT 129
+QV
Sbjct: 182 INFKDIQVI 190
Score = 133 bits (335), Expect = 2e-38
Identities = 33/170 (19%), Positives = 58/170 (34%), Gaps = 10/170 (5%)
Query: 36 PPSFVVRPQDQKVGLNGIASFQCVAEGSPL-PSVFWTQEGSQVLMFPGNAYGHLHVTQE- 93
+ P ++ + F C G + W + L + +
Sbjct: 2 VLQVDIVPSQGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDDDS 61
Query: 94 GTLRIQGVQKEDAGFFVCSALSVAGS-TTVRAFLQVTSVEDTPPPIVQVGPSNQTLPLHS 152
TL I +DAG + C + G+ + +++ + + P+ Q
Sbjct: 62 STLTIYNANIDDAGIYKCVVTAEDGTQSEATVNVKIF-----QKLMFKNAPTPQEFKEGE 116
Query: 153 VAFLPCQAVGSPPPHIRWYKNGNSLPP-EDTRINVSSSGSLQI-DVLRDD 200
A + C V S PP I W G + +D R V S+ LQI + + D
Sbjct: 117 DAVIVCDVVSSLPPTIIWKHKGRDVILKKDVRFIVLSNNYLQIRGIKKTD 166
Score = 100 bits (251), Expect = 5e-26
Identities = 35/154 (22%), Positives = 51/154 (33%), Gaps = 37/154 (24%)
Query: 136 PPIVQVGPSNQTLPLHSVAFLPCQAVGSPP-PHIRWYK-NGNSLPPEDTRINV----SSS 189
V + PS + + F CQ G I W+ NG L P RI+V S
Sbjct: 2 VLQVDIVPSQGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDDDS 61
Query: 190 GSLQI-DVLRDD-----------------------------FRAEPKDTRVASGETALLE 219
+L I + DD F+ P GE A++
Sbjct: 62 STLTIYNANIDDAGIYKCVVTAEDGTQSEATVNVKIFQKLMFKNAPTPQEFKEGEDAVIV 121
Query: 220 CGPPKGQPEPTLHWKKNGQFIDLESSKRVSILGD 253
C PT+ WK G+ + L+ R +L +
Sbjct: 122 C-DVVSSLPPTIIWKHKGRDVILKKDVRFIVLSN 154
>2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor
tyrosine kinase, growth factor cytoki dimerization,
transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A*
Length = 524
Score = 144 bits (364), Expect = 9e-40
Identities = 55/316 (17%), Positives = 96/316 (30%), Gaps = 52/316 (16%)
Query: 1 MITEVKKS-DEGKYQCYVQNMVGERETKPALLTV----HAPPSFVVRPQDQKVGLNGIAS 55
MI VK++ C V ++ +L V A P V + +
Sbjct: 171 MIKSVKRAYHRLCLHCSVDQEGKSVLSEKFILKVRPAFKAVPVVSVSKASYLLREGEEFT 230
Query: 56 FQCVAEGSPLP-SVFWTQEGSQVLM---FPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVC 111
C + W +E SQ + + +G + ++ TL I + D+G F+C
Sbjct: 231 VTCTIKDVSSSVYSTWKRENSQTKLQEKYNSWHHGDFNYERQATLTISSARVNDSGVFMC 290
Query: 112 SALSVAGSTTVRAFLQVTSVEDTPPPIVQVGP---SNQTLPLHSVAFLPCQAVGSPPP-H 167
A + GS V L+V + + P + + L + P P H
Sbjct: 291 YANNTFGSANVTTTLEVVD-----KGFINIFPMINTTVFVNDGENVDLIVEYEAFPKPEH 345
Query: 168 IRWYKNGNSLPPE-------DTRINVSSSGSLQI-DVLRDD-----FRAE---------- 204
+W + + + N+ L + + + F
Sbjct: 346 QQWIYMNRTFTDKWEDYPKSENESNIRYVSELHLTRLKGTEGGTYTFLVSNSDVNAAIAF 405
Query: 205 -------PKDTRVASGETALLECGPPKGQPEPTLHWKKNGQFIDLESSKRVSILGDPWFD 257
P+ +L+C G PEPT+ W S+ S+L
Sbjct: 406 NVYVNTKPEILTYDRLVNGMLQC-VAAGFPEPTIDWYFCPGTEQRCSA---SVLPVDVQT 461
Query: 258 SRRSRSIFGSVLGALS 273
S FG ++ S
Sbjct: 462 LNSSGPPFGKLVVQSS 477
Score = 117 bits (294), Expect = 5e-30
Identities = 33/296 (11%), Positives = 73/296 (24%), Gaps = 53/296 (17%)
Query: 1 MITEVKKSDEGKYQCYVQNMVGERETKPALLTVHAPPSFVVRPQDQKVGLNGIASFQCVA 60
+ + + ++ GKY C ++ + + V P + + + +C
Sbjct: 83 ITEKAEATNTGKYTCTNKHGLSNS----IYVFVRDPAKLFLVDRSLYGKEDNDTLVRCPL 138
Query: 61 EGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQK-EDAGFFVCSALSVAGS 119
+ + + L + + I+ V++ CS S
Sbjct: 139 TDPEVTNYSLKGCQGKPLP----KDLRFIPDPKAGIMIKSVKRAYHRLCLHCSVDQEGKS 194
Query: 120 -TTVRAFLQVTSVEDTPPPIVQVGPSNQTLPLHSVAFLPCQAVGSPPP-HIRWYKNGNSL 177
+ + L+V P+V V ++ L + C + W + +
Sbjct: 195 VLSEKFILKVRPAFK-AVPVVSVSKASYLLREGEEFTVTCTIKDVSSSVYSTWKRENSQT 253
Query: 178 PPED-------TRINVSSSGSLQI-DVLRDD----------------------------- 200
++ N +L I +D
Sbjct: 254 KLQEKYNSWHHGDFNYERQATLTISSARVNDSGVFMCYANNTFGSANVTTTLEVVDKGFI 313
Query: 201 --FRAEPKDTRVASGETALLECGPPKGQPEPTL-HWKKNGQFIDLESSKRVSILGD 253
F V GE L + P+P W + + +
Sbjct: 314 NIFPMINTTVFVNDGENVDLIV-EYEAFPKPEHQQWIYMNRTFTDKWEDYPKSENE 368
Score = 112 bits (282), Expect = 2e-28
Identities = 33/292 (11%), Positives = 64/292 (21%), Gaps = 62/292 (21%)
Query: 9 DEGKYQC----YVQNMVGERETKPALLTVHAPPSFVVRPQDQKVGLNGIASFQCVAEGSP 64
+ C ++ G + +PPS D V + C G
Sbjct: 6 GAWDFLCVLLLLLRVQTGSSQPS-VSPGEPSPPSIHPGKSDLIVRVGDEIRLLCTDPGF- 63
Query: 65 LPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRA 124
V WT E + + + G + C+ S ++
Sbjct: 64 ---VKWTFEILDETNENKQ----------NEWITEKAEATNTGKYTCTN-KHGLSNSIYV 109
Query: 125 FLQVTSVEDTPPPIVQVGPSNQTLPLHSVAFLPCQAVGSPPPHIRWYKNGNSLPPEDTRI 184
F++ P + + + + + C + P+D R
Sbjct: 110 FVRD-------PAKLFLVDRSLYGKEDNDTLVRCPLTDPEVTNYSLKGCQGKPLPKDLRF 162
Query: 185 NVSSSGSLQI-DVLRDD----------------------------------FRAEPKDTR 209
+ I V R
Sbjct: 163 IPDPKAGIMIKSVKRAYHRLCLHCSVDQEGKSVLSEKFILKVRPAFKAVPVVSVSKASYL 222
Query: 210 VASGETALLECGPPKGQPEPTLHWKKNGQFIDLESSKRVSILGDPWFDSRRS 261
+ GE + C WK+ L+ GD ++ + +
Sbjct: 223 LREGEEFTVTCTIKDVSSSVYSTWKRENSQTKLQEKYNSWHHGDFNYERQAT 274
Score = 95.5 bits (237), Expect = 2e-22
Identities = 26/155 (16%), Positives = 43/155 (27%), Gaps = 22/155 (14%)
Query: 2 ITEVKKSDEGKYQCYVQNMVGERETKPALLTVHAPPSFVVRPQDQKVGLNGIASFQCVAE 61
+T +K ++ G Y V N + V+ P + + QCVA
Sbjct: 379 LTRLKGTEGGTYTFLVSNSDVNAAIA-FNVYVNTKPEILTYDRLVNG------MLQCVAA 431
Query: 62 GSPLPSVFWTQEGSQVL----------MFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVC 111
G P P++ W + N+ G I + G C
Sbjct: 432 GFPEPTIDWYFCPGTEQRCSASVLPVDVQTLNSSGPPFGKLVVQSSIDSSAFKHNGTVEC 491
Query: 112 SALSVAGSTTVRAFLQVTSVEDTPPPIVQVGPSNQ 146
A + G T+ Q+ P +
Sbjct: 492 KAYNDVGKTSAYFNFAFKG-----NNKEQIHPHHH 521
Score = 71.2 bits (174), Expect = 4e-14
Identities = 29/170 (17%), Positives = 49/170 (28%), Gaps = 27/170 (15%)
Query: 104 EDAGFFVCSALSVAGSTTVRAFLQVTSVEDTPPPIVQVGPSNQTLPLHSVAFLPCQAVGS 163
A F+C L + T + V+ E +PP I G S+ + + L C G
Sbjct: 5 RGAWDFLCVLLLLLRVQTGSSQPSVSPGEPSPPSIH-PGKSDLIVRVGDEIRLLCTDPGF 63
Query: 164 PPPHIRWYKNGNSLPPED-------TRINVSSSG------------SLQIDVLRDD-FRA 203
++W E+ + +++G S+ + V
Sbjct: 64 ----VKWTFEILDETNENKQNEWITEKAEATNTGKYTCTNKHGLSNSIYVFVRDPAKLFL 119
Query: 204 EPKDTRVASGETALLECGPPKGQPEPTLHWKKNGQFIDLESSKRVSILGD 253
+ L+ C PE T + K Q L R
Sbjct: 120 VDRSLYGKEDNDTLVRCPLTD--PEVTNYSLKGCQGKPLPKDLRFIPDPK 167
>2v44_A NCAM2, neural cell adhesion molecule 2; phosphorylation,
immunoglobulin domain, IG, membrane, homphilic,
glycoprotein, transmembrane; 1.77A {Homo sapiens} PDB:
2xy2_A* 2vaj_A
Length = 189
Score = 136 bits (344), Expect = 1e-39
Identities = 32/169 (18%), Positives = 58/169 (34%), Gaps = 10/169 (5%)
Query: 35 APPSFVVRPQDQKVGLNGIASFQCVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEG 94
A + ++ + F C A G P ++ +G +++
Sbjct: 1 ALLQVTISLSKVELSVGESKFFTCTAIGEPESIDWYNPQGEKII--STQRVVVQKEGVRS 58
Query: 95 TLRIQGVQKEDAGFFVCSALSVAGST-TVRAFLQVTSVEDTPPPIVQVGPSNQTLPLHSV 153
L I EDAG + C A G T L++ + S Q
Sbjct: 59 RLTIYNANIEDAGIYRCQATDAKGQTQEATVVLEIYQ-----KLTFREVVSPQEFKQGED 113
Query: 154 AFLPCQAVGSPPPHIRWYKNGNSLPP-EDTRINVSSSGSLQI-DVLRDD 200
A + C+ SP P + W + + D R + ++ +LQI ++ + D
Sbjct: 114 AEVVCRVSSSPAPAVSWLYHNEEVTTISDNRFAMLANNNLQILNINKSD 162
Score = 129 bits (327), Expect = 3e-37
Identities = 28/141 (19%), Positives = 44/141 (31%), Gaps = 12/141 (8%)
Query: 1 MITEVKKSDEGKYQCYVQNMVGERETKPALLTVHAPPSFVVRPQDQKVGLNGIASFQCVA 60
I D G Y+C + G+ + +L ++ +F Q+ A C
Sbjct: 61 TIYNANIEDAGIYRCQATDAKGQTQEATVVLEIYQKLTFREVVSPQEFKQGEDAEVVCRV 120
Query: 61 EGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGST 120
SP P+V W +V + L+I + K D G + C A
Sbjct: 121 SSSPAPAVSWLYHNEEVTTISD---NRFAMLANNNLQILNINKSDEGIYRCEGRVEARGE 177
Query: 121 TVRAFLQVTSVEDTPPPIVQV 141
+ V IV V
Sbjct: 178 IDFRDIIV---------IVNV 189
Score = 100 bits (250), Expect = 6e-26
Identities = 27/151 (17%), Positives = 43/151 (28%), Gaps = 35/151 (23%)
Query: 136 PPIVQVGPSNQTLPLHSVAFLPCQAVGSPPPHIRWYKNGNSLPPEDTRINVSSSG---SL 192
V + S L + F C A+G P + G + R+ V G L
Sbjct: 2 LLQVTISLSKVELSVGESKFFTCTAIGEPESIDWYNPQGEKIISTQ-RVVVQKEGVRSRL 60
Query: 193 QI-DVLRDD-----------------------------FRAEPKDTRVASGETALLECGP 222
I + +D FR GE A + C
Sbjct: 61 TIYNANIEDAGIYRCQATDAKGQTQEATVVLEIYQKLTFREVVSPQEFKQGEDAEVVC-R 119
Query: 223 PKGQPEPTLHWKKNGQFIDLESSKRVSILGD 253
P P + W + + + S R ++L +
Sbjct: 120 VSSSPAPAVSWLYHNEEVTTISDNRFAMLAN 150
Score = 53.6 bits (129), Expect = 7e-09
Identities = 10/54 (18%), Positives = 21/54 (38%), Gaps = 3/54 (5%)
Query: 201 FRAEPKDTRVASGETALLECGPPKGQPEPTLHWKKNGQFIDLESSKRVSILGDP 254
++ GE+ C G+PE + G+ + S++RV + +
Sbjct: 5 VTISLSKVELSVGESKFFTC-TAIGEPESIDWYNPQGE--KIISTQRVVVQKEG 55
>3ejj_X Macrophage colony-stimulating factor 1 receptor; growth
factor-receptor complex, receptor tyrosine kinase, CY
4-helix bundle, ATP-binding; HET: NAG; 2.40A {Mus
musculus}
Length = 289
Score = 138 bits (348), Expect = 3e-39
Identities = 36/215 (16%), Positives = 69/215 (32%), Gaps = 20/215 (9%)
Query: 2 ITEVKKSDEGKYQCYVQNMVGERETKPALLTVHAPPS-FVVRPQDQKVGLNGIASFQCVA 60
+ G Y+C T L V P + + Q+ V A C+
Sbjct: 55 TRNATFKNTGTYRCTELEDPMAGSTT-IHLYVKDPAHSWNLLAQEVTVVEGQEAVLPCLI 113
Query: 61 EGSPL-PSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSA-LSVAG 118
L SV +EG + ++ + I+ + D+ +VC ++
Sbjct: 114 TDPALKDSVSLMREGGRQVLRKTV----YFFSPWRGFIIRKAKVLDSNTYVCKTMVNGRE 169
Query: 119 STTVRAFLQVTSVEDTPPPIVQVGPSNQTLPLHSVAFLPCQAVGSPPPHIRWYKNGNSLP 178
ST+ +L+V V PP +++ PS A + C A + K G++
Sbjct: 170 STSTGIWLKVNRVH-PEPPQIKLEPSKLVRIRGEAAQIVCSATNAEVGFNVILKRGDTKL 228
Query: 179 PEDTRINVS-----SSGSLQIDVLRDDFRAEPKDT 208
+ +L ++ + +D
Sbjct: 229 EIPLNSDFQDNYYKKVRALSLN------AVDFQDA 257
Score = 123 bits (310), Expect = 1e-33
Identities = 36/238 (15%), Positives = 54/238 (22%), Gaps = 51/238 (21%)
Query: 36 PPSFVVRPQDQKVGLNGIASFQCVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGT 95
P + V + +CV+ GS V W S + G T
Sbjct: 4 APVIEPSGPELVVEPGETVTLRCVSNGS----VEWDGPISPYWTLDPESPG-------ST 52
Query: 96 LRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVTSVEDTPPPIVQVGPSNQTLPLHSVAF 155
L + ++ G + C+ L + + L V P + T+ A
Sbjct: 53 LTTRNATFKNTGTYRCTELEDPMAGSTTIHLYVKD----PAHSWNLLAQEVTVVEGQEAV 108
Query: 156 LPCQAVGSPP-PHIRWYKNGNSLPPEDTRINVSSSGSLQI-DVLRDD------------- 200
LPC + + G T S I D
Sbjct: 109 LPCLITDPALKDSVSLMREGGRQVLRKTVYFFSPWRGFIIRKAKVLDSNTYVCKTMVNGR 168
Query: 201 --------------------FRAEPKDTRVASGETALLECGPPKGQPEPTLHWKKNGQ 238
+ EP GE A + C K G
Sbjct: 169 ESTSTGIWLKVNRVHPEPPQIKLEPSKLVRIRGEAAQIVCS-ATNAEVGFNVILKRGD 225
Score = 108 bits (270), Expect = 6e-28
Identities = 29/133 (21%), Positives = 46/133 (34%), Gaps = 5/133 (3%)
Query: 1 MITEVKKSDEGKYQCYVQNMVGERETKPALLTVH----APPSFVVRPQDQKVGLNGIASF 56
+I + K D Y C E + L V+ PP + P A
Sbjct: 147 IIRKAKVLDSNTYVCKTMVNGRESTSTGIWLKVNRVHPEPPQIKLEPSKLVRIRGEAAQI 206
Query: 57 QCVAEGSPLPSVFWTQEGSQVLMFPGNA-YGHLHVTQEGTLRIQGVQKEDAGFFVCSALS 115
C A + + + G L P N+ + + + L + V +DAG + C A +
Sbjct: 207 VCSATNAEVGFNVILKRGDTKLEIPLNSDFQDNYYKKVRALSLNAVDFQDAGIYSCVASN 266
Query: 116 VAGSTTVRAFLQV 128
G+ T QV
Sbjct: 267 DVGTRTATMNFQV 279
Score = 71.1 bits (174), Expect = 2e-14
Identities = 17/141 (12%), Positives = 37/141 (26%), Gaps = 31/141 (21%)
Query: 135 PPPIVQVGPSNQTLPLHSVAFLPCQAVGSPPPHIRWYKNGNSLPPEDTRIN--------- 185
P P+++ + L C + GS + W + D
Sbjct: 3 PAPVIEPSGPELVVEPGETVTLRCVSNGS----VEWDGPISPYWTLDPESPGSTLTTRNA 58
Query: 186 ------------------VSSSGSLQIDVLRDDFRAEPKDTRVASGETALLECGPPKGQP 227
S++ L + + ++ V G+ A+L C
Sbjct: 59 TFKNTGTYRCTELEDPMAGSTTIHLYVKDPAHSWNLLAQEVTVVEGQEAVLPCLITDPAL 118
Query: 228 EPTLHWKKNGQFIDLESSKRV 248
+ ++ + G L +
Sbjct: 119 KDSVSLMREGGRQVLRKTVYF 139
>2v9r_A Roundabout homolog 1; proto-oncogene, differentiation,
phosphorylation, disease MU neuronal development,
immunoglobulin domain, chemotaxis; 2.00A {Homo sapiens}
PDB: 2v9q_A
Length = 212
Score = 135 bits (341), Expect = 5e-39
Identities = 50/180 (27%), Positives = 73/180 (40%), Gaps = 13/180 (7%)
Query: 29 ALLTVHAPPSFVVRPQDQKVGLNGIASFQCVAEGSPLPSVFWTQEGSQVLMFPGNAYGHL 88
+L PP V P D V A+ C AEG P P++ W + G +V + H
Sbjct: 2 SLRQEDFPPRIVEHPSDLIVSKGEPATLNCKAEGRPTPTIEWYKGGERVETDKDDPRSHR 61
Query: 89 HVTQEGTLRIQGV-----QKEDAGFFVCSALSVAGSTTVR-AFLQVTSVEDTPPPIVQVG 142
+ G+L + + D G +VC A + G A L+V + Q
Sbjct: 62 MLLPSGSLFFLRIVHGRKSRPDEGVYVCVARNYLGEAVSHDASLEVAIL---RDDFRQ-N 117
Query: 143 PSNQTLPLHSVAFLPCQAV-GSPPPHIRWYKNGNSLPPEDTRINVSSSGSLQI-DVLRDD 200
PS+ + + A + CQ G P P I W K+G+ L +D RI G L I + D
Sbjct: 118 PSDVMVAVGEPAVMECQPPRGHPEPTISWKKDGSPLDDKDERI-TIRGGKLMITYTRKSD 176
Score = 108 bits (271), Expect = 1e-28
Identities = 38/148 (25%), Positives = 59/148 (39%), Gaps = 13/148 (8%)
Query: 1 MITEVKKSDEGKYQCYVQNMVGERETKPALLTVHA-PPSFVVRPQDQKVGLNGIASFQC- 58
+ + DEG Y C +N +GE + A L V F P D V + A +C
Sbjct: 75 VHGRKSRPDEGVYVCVARNYLGEAVSHDASLEVAILRDDFRQNPSDVMVAVGEPAVMECQ 134
Query: 59 VAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAG 118
G P P++ W ++GS + + + G L I +K DAG +VC ++ G
Sbjct: 135 PPRGHPEPTISWKKDGSPL-----DDKDERITIRGGKLMITYTRKSDAGKYVCVGTNMVG 189
Query: 119 STTVR-AFLQVTSVEDTPPPIVQVGPSN 145
A L V P V+ ++
Sbjct: 190 ERESEVAELTVLE----RPSFVK-AAAH 212
Score = 106 bits (266), Expect = 4e-28
Identities = 51/163 (31%), Positives = 69/163 (42%), Gaps = 43/163 (26%)
Query: 131 VEDTPPPIVQVGPSNQTLPLHSVAFLPCQAVGSPPPHIRWYKNGNSLPPE----DTRINV 186
ED PP IV+ PS+ + A L C+A G P P I WYK G + + + +
Sbjct: 5 QEDFPPRIVEH-PSDLIVSKGEPATLNCKAEGRPTPTIEWYKGGERVETDKDDPRSHRML 63
Query: 187 SSSGSL------------------------------------QIDVLRDDFRAEPKDTRV 210
SGSL ++ +LRDDFR P D V
Sbjct: 64 LPSGSLFFLRIVHGRKSRPDEGVYVCVARNYLGEAVSHDASLEVAILRDDFRQNPSDVMV 123
Query: 211 ASGETALLECGPPKGQPEPTLHWKKNGQFIDLESSKRVSILGD 253
A GE A++EC PP+G PEPT+ WKK+G L+ +
Sbjct: 124 AVGEPAVMECQPPRGHPEPTISWKKDGS--PLDDKDERITIRG 164
Score = 52.9 bits (127), Expect = 1e-08
Identities = 19/60 (31%), Positives = 29/60 (48%), Gaps = 1/60 (1%)
Query: 190 GSLQIDVLRDDFRAEPKDTRVASGETALLECGPPKGQPEPTLHWKKNGQFIDLESSKRVS 249
GSL+ + P D V+ GE A L C +G+P PT+ W K G+ ++ + S
Sbjct: 1 GSLRQEDFPPRIVEHPSDLIVSKGEPATLNCK-AEGRPTPTIEWYKGGERVETDKDDPRS 59
>2j8h_A Titin, connectin; cardiomyopathy, nuclear protein,
serine/threonine-protein KI LIMB-girdle muscular
dystrophy, phosphorylation; 1.99A {Homo sapiens} PDB:
2j8o_A 2ill_A
Length = 197
Score = 131 bits (331), Expect = 9e-38
Identities = 37/173 (21%), Positives = 56/173 (32%), Gaps = 3/173 (1%)
Query: 36 PPSFVVRPQDQKVGLNGIASFQCVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGT 95
P F ++ V A+ C G P P V W ++G +++
Sbjct: 4 APHFKEELRNLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGGYHQ 63
Query: 96 LRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVTSVEDTPPPIVQVGPSNQTLPLHSVAF 155
L I V +DA + A + GS + A L+V P G V
Sbjct: 64 LIIASVTDDDATVYQVRATNQGGSVSGTASLEVEVPAKIHLPKTLEGMGAVHALRGEVVS 123
Query: 156 LPCQAVGSPPPHIRWYKNGNSLPPEDTRINVSSSGSLQIDVLRDDFRAEPKDT 208
+ G P P I W K + + + V + S V + E KD
Sbjct: 124 IKIPFSGKPDPVITWQKGQDLIDN-NGHYQVIVTRSFTSLVFPNG--VERKDA 173
Score = 112 bits (283), Expect = 1e-30
Identities = 31/138 (22%), Positives = 44/138 (31%), Gaps = 15/138 (10%)
Query: 1 MITEVKKSDEGKYQCYVQNMVGERETKPALLTVHAP-----PSFVVRPQDQKVGLNGIAS 55
+I V D YQ N G A L V P P + + S
Sbjct: 65 IIASVTDDDATVYQVRATNQGGSVSGT-ASLEVEVPAKIHLPKTLEGMGAVHALRGEVVS 123
Query: 56 FQCVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLR----IQGVQKEDAGFFVC 111
+ G P P + W + + GH V + GV+++DAGF+V
Sbjct: 124 IKIPFSGKPDPVITWQKGQDLI--DNN---GHYQVIVTRSFTSLVFPNGVERKDAGFYVV 178
Query: 112 SALSVAGSTTVRAFLQVT 129
A + G L V
Sbjct: 179 CAKNRFGIDQKTVELDVA 196
Score = 97.1 bits (242), Expect = 1e-24
Identities = 29/157 (18%), Positives = 48/157 (30%), Gaps = 41/157 (26%)
Query: 136 PPIVQVGPSNQTLPLHSVAFLPCQAVGSPPPHIRWYKNGNSLPPEDT--RINVSSSG--S 191
P + N + S A L C+ G P P ++WY+ G + + RI G
Sbjct: 4 APHFKEELRNLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGGYHQ 63
Query: 192 LQI-DVLRDD---------------------------------FRAEPKDTRVASGETAL 217
L I V DD GE
Sbjct: 64 LIIASVTDDDATVYQVRATNQGGSVSGTASLEVEVPAKIHLPKTLEGMGAVHALRGEVVS 123
Query: 218 LECGPPKGQPEPTLHWKKNGQFIDLESSKRVSILGDP 254
++ P G+P+P + W+K I +++ ++
Sbjct: 124 IKI-PFSGKPDPVITWQKGQDLI--DNNGHYQVIVTR 157
>4dkd_C Macrophage colony-stimulating factor 1 receptor; dimeric four-helix
bundle cytokine, receptor tyrosine kinase glycosylation;
HET: NAG BMA; 3.00A {Homo sapiens}
Length = 292
Score = 133 bits (337), Expect = 1e-37
Identities = 32/208 (15%), Positives = 61/208 (29%), Gaps = 15/208 (7%)
Query: 2 ITEVKKSDEGKYQCYVQNMVGERETKPALLTVHAPPS-FVVRPQDQKVGLNGIASFQCVA 60
+ G Y+C L V P + V Q+ V + A C+
Sbjct: 55 TNNATFQNTGTYRCTEPGDPLGGSAA-IHLYVKDPARPWNVLAQEVVVFEDQDALLPCLL 113
Query: 61 EGSPL-PSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSA-LSVAG 118
L V + + LM N + I + + + CSA +
Sbjct: 114 TDPVLEAGVSLVRVRGRPLMRHTN----YSFSPWHGFTIHRAKFIQSQDYQCSALMGGRK 169
Query: 119 STTVRAFLQVTSVEDTPPPIVQVGPSNQTLPLHSVAFLPCQAVGSPPPHIRWYKNGNSLP 178
++ L+V V PP + P+ A + C A + ++ N+
Sbjct: 170 VMSISIRLKVQKVIPGPPALTL-VPAELVRIRGEAAQIVCSASSVDVNFDVFLQHNNTKL 228
Query: 179 PEDTRINVSSS-----GSLQI-DVLRDD 200
+ + ++ +L + V
Sbjct: 229 AIPQQSDFHNNRYQKVLTLNLDQVDFQH 256
Score = 115 bits (288), Expect = 2e-30
Identities = 29/252 (11%), Positives = 48/252 (19%), Gaps = 52/252 (20%)
Query: 35 APPSFVVRPQDQKVGLNGIASFQCVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEG 94
+ P + V + +CV GS V W P +
Sbjct: 3 SIPVIEPSVPELVVKPGATVTLRCVGNGS----VEWDGP-------PSPHWTLYSDGSSS 51
Query: 95 TLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVTSVEDTPPPIVQVGPSNQTLPLHSVA 154
L ++ G + C+ + L V P V + A
Sbjct: 52 ILSTNNATFQNTGTYRCTEPGDPLGGSAAIHLYVKD----PARPWNVLAQEVVVFEDQDA 107
Query: 155 FLPCQAVGSPP-PHIRWYKNGNSLPPEDTRINVSSSGSLQI-DVLRDD------------ 200
LPC + + T + S I
Sbjct: 108 LLPCLLTDPVLEAGVSLVRVRGRPLMRHTNYSFSPWHGFTIHRAKFIQSQDYQCSALMGG 167
Query: 201 ---------------------FRAEPKDTRVASGETALLECGPPKGQPEPTLH-WKKNGQ 238
P + GE A + C + N
Sbjct: 168 RKVMSISIRLKVQKVIPGPPALTLVPAELVRIRGEAAQIVCS-ASSVDVNFDVFLQHNNT 226
Query: 239 FIDLESSKRVSI 250
+ +
Sbjct: 227 KLAIPQQSDFHN 238
Score = 105 bits (263), Expect = 8e-27
Identities = 28/134 (20%), Positives = 44/134 (32%), Gaps = 5/134 (3%)
Query: 1 MITEVKKSDEGKYQCYVQNMVGERETKPALLTV----HAPPSFVVRPQDQKVGLNGIASF 56
I K YQC + + L V PP+ + P + A
Sbjct: 147 TIHRAKFIQSQDYQCSALMGGRKVMSISIRLKVQKVIPGPPALTLVPAELVRIRGEAAQI 206
Query: 57 QCVAEGSPLPSVFWTQEGSQVLMFPGNAYGH-LHVTQEGTLRIQGVQKEDAGFFVCSALS 115
C A + + Q + L P + H + TL + V + AG + C A +
Sbjct: 207 VCSASSVDVNFDVFLQHNNTKLAIPQQSDFHNNRYQKVLTLNLDQVDFQHAGNYSCVASN 266
Query: 116 VAGSTTVRAFLQVT 129
V G + F +V
Sbjct: 267 VQGKHSTSMFFRVV 280
Score = 65.0 bits (158), Expect = 2e-12
Identities = 22/141 (15%), Positives = 41/141 (29%), Gaps = 24/141 (17%)
Query: 136 PPIVQVGPSNQTLPLHSVAFLPCQAVGS------PPPHIRWYKNGNS-------LPPEDT 182
P+++ + + L C GS P PH Y +G+S ++T
Sbjct: 4 IPVIEPSVPELVVKPGATVTLRCVGNGSVEWDGPPSPHWTLYSDGSSSILSTNNATFQNT 63
Query: 183 ----------RINVSSSGSLQIDVLRDDFRAEPKDTRVASGETALLECGPPKGQPEPTLH 232
+ S++ L + + ++ V + ALL C E +
Sbjct: 64 GTYRCTEPGDPLGGSAAIHLYVKDPARPWNVLAQEVVVFEDQDALLPCLLTDPVLEAGVS 123
Query: 233 WKKNGQFIDLESSKRVSILGD 253
+ L S
Sbjct: 124 LVRVRGRP-LMRHTNYSFSPW 143
>3ojm_B Fibroblast growth factor receptor 2; beta trefoil motif,
immunoglobulin-like domain, growth facto factor
receptor, extracellular; 2.10A {Homo sapiens} PDB:
1nun_B* 3oj2_C 2fdb_P 1iil_E 1ev2_E 1e0o_B* 1ii4_E
1djs_A 3ojv_C* 1cvs_C 1fq9_C* 1evt_C
Length = 231
Score = 131 bits (330), Expect = 3e-37
Identities = 38/202 (18%), Positives = 70/202 (34%), Gaps = 27/202 (13%)
Query: 18 QNMVGERETKPALLTVHAPPSFV----VRPQDQKVGLNGIASFQCVAEGSPLPSVFWTQE 73
++ V E P + + + V F+C A G+P+P++ W +
Sbjct: 3 EDFVSENSN------NKRAPYWTNTEKMEKRLHAVPAANTVKFRCPAGGNPMPTMRWLKN 56
Query: 74 GSQVLMFPGNAYGHLHVTQE-GTLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVTSVE 132
G + + G V + +L ++ V D G + C + GS L V
Sbjct: 57 GKEF--KQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSINHTYHLDVVERS 114
Query: 133 DTPPPIVQVGPSNQTLPLHSVAFLPCQAVGSPPPHIRWYKNGNSLP-------------P 179
P + P+N + + C+ PHI+W K+
Sbjct: 115 RHRPILQAGLPANASTVVGGDVEFVCKVYSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVL 174
Query: 180 EDTRINVSSSGSLQI-DVLRDD 200
+ + IN S++ L + +V D
Sbjct: 175 KHSGINSSNAEVLALFNVTEAD 196
Score = 123 bits (310), Expect = 3e-34
Identities = 30/151 (19%), Positives = 51/151 (33%), Gaps = 15/151 (9%)
Query: 1 MITEVKKSDEGKYQCYVQNMVGERETKPALLTV-----HAPPSFVVRPQDQKVGLNGIAS 55
++ V SD+G Y C V+N G L V H P P + + G
Sbjct: 79 IMESVVPSDKGNYTCVVENEYGSINHT-YHLDVVERSRHRPILQAGLPANASTVVGGDVE 137
Query: 56 FQCVAEGSPLPSVFWTQEGSQ---------VLMFPGNAYGHLHVTQEGTLRIQGVQKEDA 106
F C P + W + + + + ++ + L + V + DA
Sbjct: 138 FVCKVYSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKHSGINSSNAEVLALFNVTEADA 197
Query: 107 GFFVCSALSVAGSTTVRAFLQVTSVEDTPPP 137
G ++C + G A+L V + P
Sbjct: 198 GEYICKVSNYIGQANQSAWLTVLPKQQAPGR 228
Score = 86.5 bits (214), Expect = 2e-20
Identities = 30/188 (15%), Positives = 49/188 (26%), Gaps = 45/188 (23%)
Query: 125 FLQVTSVEDTPPPIVQ---VGPSNQTLPLHSVAFLPCQAVGSPPPHIRWYKNGNSLPPED 181
F+ S P + +P + C A G+P P +RW KNG E
Sbjct: 5 FVSENSNNKRAPYWTNTEKMEKRLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEH 64
Query: 182 ---TRINVSSSGSLQI-DVLRDD---------------------------------FRAE 204
+ SL + V+ D
Sbjct: 65 RIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSINHTYHLDVVERSRHRPILQAGL 124
Query: 205 PKDTRVASGETALLECGPPKGQPEPTLHWKKNGQFIDLESSKRVSILGDPWFDSRRSRSI 264
P + G C +P + W K+ + ++ + G P+ + I
Sbjct: 125 PANASTVVGGDVEFVC-KVYSDAQPHIQWIKHVE----KNGSKYGPDGLPYLKVLKHSGI 179
Query: 265 FGSVLGAL 272
S L
Sbjct: 180 NSSNAEVL 187
Score = 49.9 bits (119), Expect = 2e-07
Identities = 13/44 (29%), Positives = 21/44 (47%), Gaps = 1/44 (2%)
Query: 2 ITEVKKSDEGKYQCYVQNMVGERETKPALLTVHAPPSFVVRPQD 45
+ V ++D G+Y C V N +G+ A LTV R ++
Sbjct: 189 LFNVTEADAGEYICKVSNYIGQANQS-AWLTVLPKQQAPGREKE 231
>1itb_B Type 1 interleukin-1 receptor; immunoglobulin fold, transmembrane,
glycoprotein, signal, complex (immunoglobulin/receptor);
2.50A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB:
1ira_Y* 4dep_B* 1g0y_R
Length = 315
Score = 132 bits (333), Expect = 8e-37
Identities = 39/206 (18%), Positives = 63/206 (30%), Gaps = 19/206 (9%)
Query: 2 ITEVKKSDEGKYQCYVQNMVGERETKPALLTVHAPPSFVVRPQ---DQKVGLNGIASFQC 58
K D G Y C V+N K + V P+ Q QK+ + G C
Sbjct: 66 FVPAKVEDSGHYYCVVRNSSYCLRIKISAKFVENEPNLCYNAQAIFKQKLPVAGDGGLVC 125
Query: 59 ------VAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCS 112
E + LP + W ++ P + L + V ++ G + C
Sbjct: 126 PYMEFFKNENNELPKLQWYKDCK-----PLLLDNIHFSGVKDRLIVMNVAEKHRGNYTCH 180
Query: 113 ALSVAGST--TVRAFLQVTSVE---DTPPPIVQVGPSNQTLPLHSVAFLPCQAVGSPPPH 167
A + ++ ++E T P IV + L S L C G
Sbjct: 181 ASYTYLGKQYPITRVIEFITLEENKPTRPVIVSPANETMEVDLGSQIQLICNVTGQLSDI 240
Query: 168 IRWYKNGNSLPPEDTRINVSSSGSLQ 193
W NG+ + +D +
Sbjct: 241 AYWKWNGSVIDEDDPVLGEDYYSVEN 266
Score = 111 bits (278), Expect = 8e-29
Identities = 42/281 (14%), Positives = 77/281 (27%), Gaps = 59/281 (20%)
Query: 36 PPSFVVRPQDQKVGLNGIASFQCVAEGSP-LPSVFWTQEGSQVLMFPGNAYGHLHVTQE- 93
+V ++ I C + ++ W ++ S+ P + + Q
Sbjct: 11 EKIILVSSANE------IDVRPCPLNPNEHKGTITWYKDDSKT---PVSTEQASRIHQHK 61
Query: 94 GTLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVTSVEDTPPPIVQVGPSNQTLPLHSV 153
L + ED+G + C + + ++ + E Q Q LP+
Sbjct: 62 EKLWFVPAKVEDSGHYYCVVRNSSYCLRIKISAKFVENEPNLCYNAQA-IFKQKLPVAGD 120
Query: 154 AFLPC------QAVGSPPPHIRWYKNGNSLPPEDTRINVSSSGSLQI-DVLRDD------ 200
L C + + P ++WYK+ L ++ L + +V
Sbjct: 121 GGLVCPYMEFFKNENNELPKLQWYKDCKPLLLDNIHF-SGVKDRLIVMNVAEKHRGNYTC 179
Query: 201 --------------------------------FRAEPKDTRVASGETALLECGPPKGQPE 228
+ V G L C GQ
Sbjct: 180 HASYTYLGKQYPITRVIEFITLEENKPTRPVIVSPANETMEVDLGSQIQLIC-NVTGQLS 238
Query: 229 PTLHWKKNGQFIDLESSKRVSILGDPWFDSRRSRSIFGSVL 269
+WK NG ID + + + RS +VL
Sbjct: 239 DIAYWKWNGSVIDEDDPVLGEDYYSVENPANKRRSTLITVL 279
Score = 87.5 bits (216), Expect = 4e-20
Identities = 21/148 (14%), Positives = 35/148 (23%), Gaps = 20/148 (13%)
Query: 1 MITEVKKSDEGKYQCYVQNMVGERE---TKPALLTVHAPPSFVV------RPQDQKVGLN 51
++ V + G Y C+ ++ T+ + +V L
Sbjct: 165 IVMNVAEKHRGNYTCHASYTYLGKQYPITRVIEFITLEENKPTRPVIVSPANETMEVDLG 224
Query: 52 GIASFQCVAEGSPLPSVFWTQEGSQVLMFPG----------NAYGHLHVTQEGTLRIQGV 101
C G +W GS + N T L I +
Sbjct: 225 SQIQLICNVTGQLSDIAYWKWNGSVIDEDDPVLGEDYYSVENPANKRRSTLITVLNISEI 284
Query: 102 QKED-AGFFVCSALSVAGSTTVRAFLQV 128
+ F C A + G L
Sbjct: 285 ESRFYKHPFTCFAKNTHGIDAAYIQLIY 312
Score = 67.4 bits (164), Expect = 4e-13
Identities = 22/169 (13%), Positives = 44/169 (26%), Gaps = 49/169 (28%)
Query: 126 LQVTSVEDTPPPIVQVGPSNQTLPLHSVAFLPCQAVGSPPPH-IRWYKNGNSLPP---ED 181
L+ ++ I+ V +N+ + PC + I WYK+ + P +
Sbjct: 1 LEADKCKEREEKIILVSSANE------IDVRPCPLNPNEHKGTITWYKDDSKTPVSTEQA 54
Query: 182 TRINVSSSGSLQI-DVLRDD--------------------------------FRAEPKDT 208
+RI L +D
Sbjct: 55 SRI-HQHKEKLWFVPAKVEDSGHYYCVVRNSSYCLRIKISAKFVENEPNLCYNAQAIFKQ 113
Query: 209 RVASGETALLEC-----GPPKGQPEPTLHWKKNGQFIDLESSKRVSILG 252
++ L C + P L W K+ + + L++ +
Sbjct: 114 KLPVAGDGGLVCPYMEFFKNENNELPKLQWYKDCKPLLLDNIHFSGVKD 162
Score = 43.6 bits (102), Expect = 4e-05
Identities = 8/52 (15%), Positives = 18/52 (34%)
Query: 202 RAEPKDTRVASGETALLECGPPKGQPEPTLHWKKNGQFIDLESSKRVSILGD 253
R E ++ E + C + + T+ W K+ + + + I
Sbjct: 9 REEKIILVSSANEIDVRPCPLNPNEHKGTITWYKDDSKTPVSTEQASRIHQH 60
>2wv3_A Neuroplastin; igcam, membrane, glycoprotein, cell membrane, cell
adhesion, transmembrane, disulfide bond, alternative
splicing; HET: NAG; 1.95A {Rattus norvegicus}
Length = 190
Score = 128 bits (323), Expect = 1e-36
Identities = 33/132 (25%), Positives = 54/132 (40%), Gaps = 6/132 (4%)
Query: 1 MITEVKKSDEGKYQCYVQNMVGERETKPALLTVHAPPSFVVRPQDQKVGLNGIASFQCVA 60
I + + D G+Y C V + V + A + V A P + + A C +
Sbjct: 59 RINKPRAEDSGEYHC-VYHFVSAPKAN-ATIEVKAAPDITGHKRSENKNEGQDAMMYCKS 116
Query: 61 EGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGT---LRIQGVQ-KEDAGFFVCSALSV 116
G P P W ++ + V N+ G + + L I +Q ED G + C+A +
Sbjct: 117 VGYPHPEWMWRKKENGVFEEISNSSGRFFIINKENYTELNIVNLQITEDPGEYECNATNS 176
Query: 117 AGSTTVRAFLQV 128
GS +V L+V
Sbjct: 177 IGSASVSTVLRV 188
Score = 120 bits (302), Expect = 1e-33
Identities = 30/170 (17%), Positives = 53/170 (31%), Gaps = 22/170 (12%)
Query: 34 HAPPSFVVRPQDQKVGLNGIASFQCVAEGSPLP--SVFWTQEGSQVLMFPGNAYGHLHVT 91
P V + + QC S +WT+ G ++
Sbjct: 1 QNEPRIVTSEEVIIRDSLLPVTLQCNLTSSSHTLMYSYWTKNGVEL---TATR----KNA 53
Query: 92 QEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVTSVEDTPPPIVQVGPSNQTLPLH 151
RI + ED+G + C + A ++V + P + ++
Sbjct: 54 SNMEYRINKPRAEDSGEYHCVY-HFVSAPKANATIEVKA-----APDITGHKRSENKNEG 107
Query: 152 SVAFLPCQAVGSPPPHIRWYKNGNSLPPEDT----RINVSSSG---SLQI 194
A + C++VG P P W K N + E + R + + L I
Sbjct: 108 QDAMMYCKSVGYPHPEWMWRKKENGVFEEISNSSGRFFIINKENYTELNI 157
Score = 80.3 bits (198), Expect = 2e-18
Identities = 25/152 (16%), Positives = 38/152 (25%), Gaps = 37/152 (24%)
Query: 136 PPIVQVGPSNQTLPLHSVAFLPCQAVGSPPP--HIRWYKNGNSLPPEDTRINVSSSGSLQ 193
P + L C S + W KNG L +S+ +
Sbjct: 3 EPRIVTSEEVIIRDSLLPVTLQCNLTSSSHTLMYSYWTKNGVELTATR---KNASNMEYR 59
Query: 194 I-DVLRDD---------------------------FRAEPKDTRVASGETALLECGPPKG 225
I +D + G+ A++ C G
Sbjct: 60 INKPRAEDSGEYHCVYHFVSAPKANATIEVKAAPDITGHKRSENKNEGQDAMMYCKS-VG 118
Query: 226 QPEPTLHWKKNGQFIDLE---SSKRVSILGDP 254
P P W+K + E SS R I+
Sbjct: 119 YPHPEWMWRKKENGVFEEISNSSGRFFIINKE 150
>2va4_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; transmembrane,
phosphorylation, immunoglobulin domain, membrane,
glycoprotein; HET: NAG; 1.9A {Homo sapiens} PDB: 2xy1_A*
Length = 192
Score = 128 bits (322), Expect = 2e-36
Identities = 35/133 (26%), Positives = 57/133 (42%), Gaps = 7/133 (5%)
Query: 1 MITEVKKSDEGKYQCYVQNMVGERETKPALLTVHAPPSFVVRPQDQKVGLNGIASFQCVA 60
+ + SD G Y C N GE E + A L V P + + +++ NG + C A
Sbjct: 61 TVRNIINSDGGPYVCRATNKAGEDEKQ-AFLQVFVQPHII-QLKNETTYENGQVTLVCDA 118
Query: 61 EGSPLPSVFWTQEGSQVLMFPGNAY--GHLHVTQE---GTLRIQGVQKEDAGFFVCSALS 115
EG P+P + W + G+ G + V + +L I+ V+ D+G + C A S
Sbjct: 119 EGEPIPEITWKRAVDGFTFTEGDKSLDGRIEVKGQHGSSSLHIKDVKLSDSGRYDCEAAS 178
Query: 116 VAGSTTVRAFLQV 128
G +L +
Sbjct: 179 RIGGHQKSMYLDI 191
Score = 127 bits (320), Expect = 4e-36
Identities = 47/178 (26%), Positives = 70/178 (39%), Gaps = 22/178 (12%)
Query: 35 APPSFVV--RPQDQKVGLNGIASFQCVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQ 92
+ P+ + + + +F C A GSP P++ W + G + ++
Sbjct: 1 SMPAISMPQKSFNATAERGEEMTFSCRASGSPEPAISWFRNGKLIEENEK----YILKGS 56
Query: 93 EGTLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVTSVEDTPPPIVQVGPSNQTLPLHS 152
L ++ + D G +VC A + AG +AFLQV P I+Q N+T +
Sbjct: 57 NTELTVRNIINSDGGPYVCRATNKAGEDEKQAFLQVF----VQPHIIQ--LKNETTYENG 110
Query: 153 VAFLPCQAVGSPPPHIRWYKNGNSLPPE------DTRINVSS---SGSLQI-DVLRDD 200
L C A G P P I W + + D RI V S SL I DV D
Sbjct: 111 QVTLVCDAEGEPIPEITWKRAVDGFTFTEGDKSLDGRIEVKGQHGSSSLHIKDVKLSD 168
Score = 88.3 bits (219), Expect = 2e-21
Identities = 26/142 (18%), Positives = 45/142 (31%), Gaps = 29/142 (20%)
Query: 135 PPPIVQVGPSNQTLPLHSVAFLPCQAVGSPPPHIRWYKNGNSLPPEDTRINVSSSGSLQI 194
P + N T C+A GSP P I W++NG + + I S+ L +
Sbjct: 3 PAISMPQKSFNATAERGEEMTFSCRASGSPEPAISWFRNGKLIEENEKYILKGSNTELTV 62
Query: 195 -DVLRDD----------------FRA-----------EPKDTRVASGETALLECGPPKGQ 226
+++ D +A + K+ L C +G+
Sbjct: 63 RNIINSDGGPYVCRATNKAGEDEKQAFLQVFVQPHIIQLKNETTYENGQVTLVC-DAEGE 121
Query: 227 PEPTLHWKKNGQFIDLESSKRV 248
P P + WK+ +
Sbjct: 122 PIPEITWKRAVDGFTFTEGDKS 143
Score = 49.4 bits (118), Expect = 2e-07
Identities = 12/50 (24%), Positives = 22/50 (44%), Gaps = 3/50 (6%)
Query: 204 EPKDTRVASGETALLECGPPKGQPEPTLHWKKNGQFIDLESSKRVSILGD 253
+ + GE C G PEP + W +NG+ +E +++ + G
Sbjct: 10 KSFNATAERGEEMTFSC-RASGSPEPAISWFRNGK--LIEENEKYILKGS 56
>1nn8_R CD155 antigen, poliovirus receptor; icosahedral virus,
picornavirus, virus/receptor complex; 15.00A {Homo
sapiens} SCOP: i.6.1.1 PDB: 1dgi_R
Length = 302
Score = 128 bits (322), Expect = 3e-35
Identities = 40/206 (19%), Positives = 62/206 (30%), Gaps = 12/206 (5%)
Query: 1 MITEVKKSDEGKYQCYVQNMVGERETKPALLTVHAPPSFVVRPQDQKVGLNGIASFQCVA 60
+ ++ DEG Y C + L V A P Q ++ + +CV+
Sbjct: 82 RMFGLRVEDEGNYTCLFVTFPQGSRSVDIWLRVLAKPQNTAEVQKVQLTGEPVPMARCVS 141
Query: 61 E-GSPLPSVFWTQEGSQVLMFPGNAYGHLH--VTQEGTLRIQGVQKEDAGFFVCSALSVA 117
G P + W + + G L VT + + D C +
Sbjct: 142 TGGRPPAQITWHSDL-GGMPNTSQVPGFLSGTVTVTSLWILVPSSQVDGKNVTCKVEHES 200
Query: 118 GSTTVRAFLQVTSVEDTPPPIVQVGPSNQTLPLHSVAFLPCQAVGSPPPH-IRWYKNGNS 176
+ +T V PP + G N + A L C A +P P W
Sbjct: 201 FEKPQLLTVNLT-VY-YPPEVSISGYDNNWYLGQNEATLTCDARSNPEPTGYNWSTTMGP 258
Query: 177 LPPEDTRINVSSSGSLQI-DVLRDDF 201
LP V+ L I V +
Sbjct: 259 LP----PFAVAQGAQLLIRPVDKPIN 280
Score = 92.5 bits (229), Expect = 5e-22
Identities = 38/261 (14%), Positives = 66/261 (25%), Gaps = 67/261 (25%)
Query: 39 FVVRPQDQKVGLNGIASFQCVAEGSPLP-----SVFWTQEGSQVLMFPGNAYGHLHV--- 90
V P L + C + + + W + G M +
Sbjct: 3 VVQAPTQVPGFLGDSVTLPCYLQVPNMEVTHVSQLTWARHGESGSMAVFHQTQGPSYSES 62
Query: 91 -------------TQEGTLRIQGVQKEDAGFFVCSALS-VAGSTTVRAFLQVTSVEDTPP 136
+ +LR+ G++ ED G + C ++ GS +V +L+V +
Sbjct: 63 KRLEFVAARLGAELRNASLRMFGLRVEDEGNYTCLFVTFPQGSRSVDIWLRVLA-----K 117
Query: 137 PIVQVGPSNQTLPLHSVAFLPCQAV-GSPPPHIRWYKNGNSLPPEDTRIN-----VSSSG 190
P L V C + G PP I W+ + +P V+ +
Sbjct: 118 PQNTAEVQKVQLTGEPVPMARCVSTGGRPPAQITWHSDLGGMPNTSQVPGFLSGTVTVTS 177
Query: 191 SLQIDVLRDDFRAE--------------------------------PKDTRVASGETALL 218
+ + A L
Sbjct: 178 LWILVPSSQVDGKNVTCKVEHESFEKPQLLTVNLTVYYPPEVSISGYDNNWYLGQNEATL 237
Query: 219 ECGPPKGQPEPT-LHWKKNGQ 238
C + PEPT +W
Sbjct: 238 TC-DARSNPEPTGYNWSTTMG 257
Score = 84.8 bits (209), Expect = 3e-19
Identities = 28/131 (21%), Positives = 46/131 (35%), Gaps = 11/131 (8%)
Query: 1 MITEVKKSDEGKYQCYVQNMVGERE-TKPALLTVHAPPSFVVRPQDQKVGLNG-IASFQC 58
++ + D C V++ E+ LTV+ PP + D L A+ C
Sbjct: 180 ILVPSSQVDGKNVTCKVEHESFEKPQLLTVNLTVYYPPEVSISGYDNNWYLGQNEATLTC 239
Query: 59 VAEGSPLP-SVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVA 117
A +P P W+ + F V Q L I+ V K +C+ +
Sbjct: 240 DARSNPEPTGYNWSTTMGPLPPF--------AVAQGAQLLIRPVDKPINTTLICNVTNAL 291
Query: 118 GSTTVRAFLQV 128
G+ +QV
Sbjct: 292 GARQAELTVQV 302
Score = 57.4 bits (138), Expect = 9e-10
Identities = 23/171 (13%), Positives = 44/171 (25%), Gaps = 56/171 (32%)
Query: 137 PIVQVGPSNQTLPLHSVAFLPCQAVGSPPP-----HIRWYKNGNSLP------------P 179
+VQ P+ L LPC + W ++G S
Sbjct: 2 VVVQA-PTQVPGFLGDSVTLPCYLQVPNMEVTHVSQLTWARHGESGSMAVFHQTQGPSYS 60
Query: 180 EDTRINVSSS--------GSLQI-DVLRDD-----------------------------F 201
E R+ ++ SL++ + +D
Sbjct: 61 ESKRLEFVAARLGAELRNASLRMFGLRVEDEGNYTCLFVTFPQGSRSVDIWLRVLAKPQN 120
Query: 202 RAEPKDTRVASGETALLECGPPKGQPEPTLHWKKNGQFIDLESSKRVSILG 252
AE + ++ + C G+P + W + + S + G
Sbjct: 121 TAEVQKVQLTGEPVPMARCVSTGGRPPAQITWHSDLGGMPNTSQVPGFLSG 171
Score = 31.6 bits (71), Expect = 0.28
Identities = 11/75 (14%), Positives = 25/75 (33%), Gaps = 6/75 (8%)
Query: 204 EPKDTRVASGETALLEC----GPPKGQPEPTLHWKKNGQFIDLESSKRVSILGDPWFDSR 259
P G++ L C + L W ++G+ + + G + +S+
Sbjct: 6 APTQVPGFLGDSVTLPCYLQVPNMEVTHVSQLTWARHGESGSMAVFHQTQ--GPSYSESK 63
Query: 260 RSRSIFGSVLGALSD 274
R + + L +
Sbjct: 64 RLEFVAARLGAELRN 78
>2jll_A NCAM2, neural cell adhesion molecule 2; immunoglobulin domain,
immunoglobulin superfamily, transmembrane,
phosphoprotein, membrane, glycoprotein; HET: NAG; 2.30A
{Homo sapiens} PDB: 2xyc_A* 2jlk_A* 2doc_A
Length = 389
Score = 128 bits (323), Expect = 1e-34
Identities = 34/175 (19%), Positives = 64/175 (36%), Gaps = 16/175 (9%)
Query: 37 PSFVVRPQDQKVGLNGIASFQCVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQE--- 93
P + + +++ NG + C AEG P+P + W + G+ + +
Sbjct: 2 PHII-QLKNETTYENGQVTLVCDAEGEPIPEITWKRAVDGFTFTEGDKSLDGRIEVKGQH 60
Query: 94 --GTLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVTSVEDTPPPIVQVGPSNQTLPLH 151
+L I+ V+ D+G + C A S G +L + P +
Sbjct: 61 GSSSLHIKDVKLSDSGRYDCEAASRIGGHQKSMYLDIEY-----APKFISNQTIYYSWEG 115
Query: 152 SVAFLPCQAVGSPPPHIRWYKNGNSLPPEDT----RINVSSSGSLQI-DVLRDDF 201
+ + C +PP I W ++ LP ++T + L+I +DF
Sbjct: 116 NPINISCDVKSNPPASIHWRRDKLVLPAKNTTNLKTYSTGRKMILEIAPTSDNDF 170
Score = 127 bits (322), Expect = 2e-34
Identities = 33/150 (22%), Positives = 56/150 (37%), Gaps = 8/150 (5%)
Query: 1 MITEVKKSDEGKYQCYVQNMVGERETKPALLTVHAPPSFVVRPQDQKVGLNGIASFQCVA 60
I +VK SD G+Y C + +G + L + P F+ + C
Sbjct: 66 HIKDVKLSDSGRYDCEAASRIGGHQKS-MYLDIEYAPKFISNQTIYYSWEGNPINISCDV 124
Query: 61 EGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEG---TLRIQGVQKEDAGFFVCSALSVA 117
+ +P S+ W ++ L+ P +L G L I D G + C+A +
Sbjct: 125 KSNPPASIHWRRDK---LVLPAKNTTNLKTYSTGRKMILEIAPTSDNDFGRYNCTATNHI 181
Query: 118 GSTTVRAFLQVTSVEDTPPPIVQVGPSNQT 147
G+ L + V P V++ +QT
Sbjct: 182 GTRFQEYILALADVPS-SPYGVKIIELSQT 210
Score = 90.2 bits (224), Expect = 9e-21
Identities = 31/157 (19%), Positives = 48/157 (30%), Gaps = 41/157 (26%)
Query: 136 PPIVQVGPSNQTLPLHSVAFLPCQAVGSPPPHIRWYKNGNSLP------PEDTRINVSS- 188
P I+Q N+T + L C A G P P I W + + D RI V
Sbjct: 2 PHIIQ--LKNETTYENGQVTLVCDAEGEPIPEITWKRAVDGFTFTEGDKSLDGRIEVKGQ 59
Query: 189 --SGSLQI-DVLRDD----------------------------FRAEPKDTRVASGETAL 217
S SL I DV D F + G
Sbjct: 60 HGSSSLHIKDVKLSDSGRYDCEAASRIGGHQKSMYLDIEYAPKFISNQTIYYSWEGNPIN 119
Query: 218 LECGPPKGQPEPTLHWKKNGQFIDLESSKRVSILGDP 254
+ C K P ++HW+++ + +++ +
Sbjct: 120 ISC-DVKSNPPASIHWRRDKLVLPAKNTTNLKTYSTG 155
>3grw_A Fibroblast growth factor receptor 3; FGFR3, protein-protein
complex, receptor tyrosine kinas binding, immunoglobulin
domain, kinase, membrane, nucleotid binding; HET: NAG;
2.10A {Homo sapiens}
Length = 241
Score = 124 bits (313), Expect = 1e-34
Identities = 34/167 (20%), Positives = 52/167 (31%), Gaps = 16/167 (9%)
Query: 1 MITEVKKSDEGKYQCYVQNMVGERETKPALLTV-----HAPPSFVVRPQDQKVGLNGIAS 55
++ V SD G Y C V+N G L V H P P +Q L
Sbjct: 75 VMESVVPSDRGNYTCVVENKFGSIRQT-YTLDVLERSPHRPILQAGLPANQTAVLGSDVE 133
Query: 56 FQCVAEGSPLPSVFWTQEGSQVLMFPGN----------AYGHLHVTQEGTLRIQGVQKED 105
F C P + W + G ++ V + LR+ V + D
Sbjct: 134 FHCKVYSDAQPHIQWLKHVEVNGSKVGPDGTPYVTVLKSWISESVEADVRLRLANVSERD 193
Query: 106 AGFFVCSALSVAGSTTVRAFLQVTSVEDTPPPIVQVGPSNQTLPLHS 152
G ++C A + G +L V +V+ + H
Sbjct: 194 GGEYLCRATNFIGVAEKAFWLSVHGPRAAEEELVEADEAGSVHHHHH 240
Score = 123 bits (311), Expect = 2e-34
Identities = 39/194 (20%), Positives = 68/194 (35%), Gaps = 22/194 (11%)
Query: 27 KPALLTVHAPPSFV----VRPQDQKVGLNGIASFQCVAEGSPLPSVFWTQEGSQVLMFPG 82
P P + + + V F+C A G+P PS+ W + G +
Sbjct: 2 DPDTGVDTGAPYWTRPERMDKKLLAVPAANTVRFRCPAAGNPTPSISWLKNGREF--RGE 59
Query: 83 NAYGHLHVTQE-GTLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVTSVEDTPPPIVQV 141
+ G + + + +L ++ V D G + C + GS L V P +
Sbjct: 60 HRIGGIKLRHQQWSLVMESVVPSDRGNYTCVVENKFGSIRQTYTLDVLERSPHRPILQAG 119
Query: 142 GPSNQTLPLHSVAFLPCQAVGSPPPHIRWYKNGN--------------SLPPEDTRINVS 187
P+NQT L S C+ PHI+W K+ ++ +V
Sbjct: 120 LPANQTAVLGSDVEFHCKVYSDAQPHIQWLKHVEVNGSKVGPDGTPYVTVLKSWISESVE 179
Query: 188 SSGSLQI-DVLRDD 200
+ L++ +V D
Sbjct: 180 ADVRLRLANVSERD 193
Score = 83.4 bits (206), Expect = 4e-19
Identities = 25/150 (16%), Positives = 38/150 (25%), Gaps = 41/150 (27%)
Query: 129 TSVEDTPPPIVQ---VGPSNQTLPLHSVAFLPCQAVGSPPPHIRWYKNGNSLPPEDT--- 182
T V+ P + + +P + C A G+P P I W KNG E
Sbjct: 5 TGVDTGAPYWTRPERMDKKLLAVPAANTVRFRCPAAGNPTPSISWLKNGREFRGEHRIGG 64
Query: 183 RINVSSSGSLQI-DVLRDD---------------------------------FRAEPKDT 208
SL + V+ D P +
Sbjct: 65 IKLRHQQWSLVMESVVPSDRGNYTCVVENKFGSIRQTYTLDVLERSPHRPILQAGLPANQ 124
Query: 209 RVASGETALLECGPPKGQPEPTLHWKKNGQ 238
G C +P + W K+ +
Sbjct: 125 TAVLGSDVEFHC-KVYSDAQPHIQWLKHVE 153
Score = 52.6 bits (126), Expect = 2e-08
Identities = 15/55 (27%), Positives = 22/55 (40%), Gaps = 2/55 (3%)
Query: 202 RAEPKDTRVASGETALLECGPPKGQPEPTLHWKKNGQFIDLESS-KRVSILGDPW 255
R + K V + T C P G P P++ W KNG+ E + + W
Sbjct: 19 RMDKKLLAVPAANTVRFRC-PAAGNPTPSISWLKNGREFRGEHRIGGIKLRHQQW 72
>2vr9_A Roundabout 1, ROBO; immunoglobulin-like domain, AXON guidance, cell
adhesion, immunoglobulin domain; 3.2A {Drosophila
melanogaster} PDB: 2vra_A*
Length = 217
Score = 123 bits (310), Expect = 2e-34
Identities = 45/182 (24%), Positives = 74/182 (40%), Gaps = 20/182 (10%)
Query: 33 VHAPPSFVVRPQDQKVGLNGIASFQCVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQ 92
+ P + P D V N A+ C EG P P++ W ++G V + H +
Sbjct: 6 QYQSPRIIEHPTDLVVKKNEPATLNCKVEGKPEPTIEWFKDGEPVSTNEKKS--HRVQFK 63
Query: 93 EGTL----RIQGVQKEDAGFFVCSALSVAGST-TVRAFLQVTSVEDTPPPIVQVGPSNQT 147
+G L +QG +++D G + C A + G + A LQ+ + +V P +
Sbjct: 64 DGALFFYRTMQGKKEQDGGEYWCVAKNRVGQAVSRHASLQIAVL----RDDFRVEPKDTR 119
Query: 148 LPLHSVAFLPCQAV-GSPPPHIRWYKNGNSLPP-------EDTRINVSSSGSLQI-DVLR 198
+ A L C G P P + W K+G L +R+ + G+L I +V
Sbjct: 120 VAKGETALLECGPPKGIPEPTLIWIKDGVPLDDLKAMSFGASSRVRIVDGGNLLISNVEP 179
Query: 199 DD 200
D
Sbjct: 180 ID 181
Score = 110 bits (277), Expect = 2e-29
Identities = 60/167 (35%), Positives = 79/167 (47%), Gaps = 44/167 (26%)
Query: 130 SVEDTPPPIVQVGPSNQTLPLHSVAFLPCQAVGSPPPHIRWYKNGNSLPPEDTRIN---- 185
+ + P I++ P++ + + A L C+ G P P I W+K+G + + + +
Sbjct: 4 AGQYQSPRIIE-HPTDLVVKKNEPATLNCKVEGKPEPTIEWFKDGEPVSTNEKKSHRVQF 62
Query: 186 ---------------------------------VSSSGSLQIDVLRDDFRAEPKDTRVAS 212
VS SLQI VLRDDFR EPKDTRVA
Sbjct: 63 KDGALFFYRTMQGKKEQDGGEYWCVAKNRVGQAVSRHASLQIAVLRDDFRVEPKDTRVAK 122
Query: 213 GETALLECGPPKGQPEPTLHWKKNGQFID------LESSKRVSILGD 253
GETALLECGPPKG PEPTL W K+G +D +S RV I+
Sbjct: 123 GETALLECGPPKGIPEPTLIWIKDGVPLDDLKAMSFGASSRVRIVDG 169
Score = 109 bits (273), Expect = 6e-29
Identities = 34/134 (25%), Positives = 61/134 (45%), Gaps = 6/134 (4%)
Query: 1 MITEVKKSDEGKYQCYVQNMVGERETKPALLTVHA-PPSFVVRPQDQKVGLNGIASFQCV 59
+ K+ D G+Y C +N VG+ ++ A L + F V P+D +V A +C
Sbjct: 72 TMQGKKEQDGGEYWCVAKNRVGQAVSRHASLQIAVLRDDFRVEPKDTRVAKGETALLECG 131
Query: 60 -AEGSPLPSVFWTQEGSQVLMFPGNAY---GHLHVTQEGTLRIQGVQKEDAGFFVCSALS 115
+G P P++ W ++G + ++ + + G L I V+ D G + C A +
Sbjct: 132 PPKGIPEPTLIWIKDGVPLDDLKAMSFGASSRVRIVDGGNLLISNVEPIDEGNYKCIAQN 191
Query: 116 VAGS-TTVRAFLQV 128
+ G+ + A L V
Sbjct: 192 LVGTRESSYAKLIV 205
Score = 61.0 bits (148), Expect = 3e-11
Identities = 16/44 (36%), Positives = 23/44 (52%)
Query: 1 MITEVKKSDEGKYQCYVQNMVGERETKPALLTVHAPPSFVVRPQ 44
+I+ V+ DEG Y+C QN+VG RE+ A L V +
Sbjct: 173 LISNVEPIDEGNYKCIAQNLVGTRESSYAKLIVQVKAAAHHHHH 216
>1rhf_A Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3 family, cellular
adhesion, ligand-independent DIME mutational analysis,
transferase; HET: EPE; 1.96A {Homo sapiens} SCOP:
b.1.1.1 b.1.1.4
Length = 182
Score = 122 bits (307), Expect = 2e-34
Identities = 34/167 (20%), Positives = 58/167 (34%), Gaps = 12/167 (7%)
Query: 35 APPSFVVRPQDQKVGLNGIASFQCVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEG 94
A + P V C EG P + W ++G+ V G
Sbjct: 1 AGLKLMGAPVKLTVSQGQPVKLNCSVEGMEEPDIQWVKDGAVVQNLDQLYIPVSEQHWIG 60
Query: 95 TLRIQGVQKEDAGFFVCSALSVAGS-TTVRAFLQVTSVEDTPPPIVQVGPSNQTLPLHSV 153
L ++ V++ DAG + C + + +L V P V P + +P ++
Sbjct: 61 FLSLKSVERSDAGRYWCQVEDGGETEISQPVWLTVEG-----VPFFTVEPKDLAVPPNAP 115
Query: 154 AFLPCQAVGSPPP-HIRWYKNGNSLPPEDTRINVSSSGSLQIDVLRD 199
L C+AVG P P I W++ + +V L + +
Sbjct: 116 FQLSCEAVGPPEPVTIVWWRGTTKIGGPAPSPSV-----LNVTGVTQ 157
Score = 111 bits (280), Expect = 2e-30
Identities = 30/130 (23%), Positives = 52/130 (40%), Gaps = 13/130 (10%)
Query: 1 MITEVKKSDEGKYQCYVQNMVGERETKPALLTVHAPPSFVVRPQDQKVGLNGIASFQCVA 60
+ V++SD G+Y C V++ ++P LTV P F V P+D V N C A
Sbjct: 63 SLKSVERSDAGRYWCQVEDGGETEISQPVWLTVEGVPFFTVEPKDLAVPPNAPFQLSCEA 122
Query: 61 EGSPLP-SVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGS 119
G P P ++ W + ++ + + + F C A ++ G
Sbjct: 123 VGPPEPVTIVWWRGTTK-----------IGGPAPSPSVLNVTGVTQSTMFSCEAHNLKGL 171
Query: 120 TTVR-AFLQV 128
+ R A + +
Sbjct: 172 ASSRTATVHL 181
Score = 89.5 bits (222), Expect = 7e-22
Identities = 34/151 (22%), Positives = 44/151 (29%), Gaps = 37/151 (24%)
Query: 136 PPIVQVGPSNQTLPLHSVAFLPCQAVGSPPPHIRWYKNGNSLPPEDTRINVSSS----GS 191
+ P T+ L C G P I+W K+G + D S G
Sbjct: 2 GLKLMGAPVKLTVSQGQPVKLNCSVEGMEEPDIQWVKDGAVVQNLDQLYIPVSEQHWIGF 61
Query: 192 LQI-DVLRDD-----------------------------FRAEPKDTRVASGETALLECG 221
L + V R D F EPKD V L C
Sbjct: 62 LSLKSVERSDAGRYWCQVEDGGETEISQPVWLTVEGVPFFTVEPKDLAVPPNAPFQLSC- 120
Query: 222 PPKGQPEP-TLHWKKNGQFIDLESSKRVSIL 251
G PEP T+ W + I + S+L
Sbjct: 121 EAVGPPEPVTIVWWRGTTKIG-GPAPSPSVL 150
Score = 50.6 bits (121), Expect = 6e-08
Identities = 12/58 (20%), Positives = 20/58 (34%), Gaps = 1/58 (1%)
Query: 201 FRAEPKDTRVASGETALLECGPPKGQPEPTLHWKKNGQFIDLESSKRVSILGDPWFDS 258
P V+ G+ L C +G EP + W K+G + + + W
Sbjct: 5 LMGAPVKLTVSQGQPVKLNCSV-EGMEEPDIQWVKDGAVVQNLDQLYIPVSEQHWIGF 61
Score = 40.2 bits (94), Expect = 3e-04
Identities = 4/34 (11%), Positives = 13/34 (38%)
Query: 1 MITEVKKSDEGKYQCYVQNMVGERETKPALLTVH 34
++ + + C N+ G ++ A + +
Sbjct: 149 VLNVTGVTQSTMFSCEAHNLKGLASSRTATVHLQ 182
>3k0w_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1,
isoform 2; hydrolase, immunoglobulin domain, nucleus,
protease; 2.80A {Homo sapiens}
Length = 218
Score = 121 bits (306), Expect = 7e-34
Identities = 39/184 (21%), Positives = 56/184 (30%), Gaps = 30/184 (16%)
Query: 29 ALLTVHAPPSFVVRPQDQKVGLNGIASFQCVAEGSPLPSVFWTQEGSQVLMFPGNAYGHL 88
+ V V P+ + V C A G P W + +
Sbjct: 11 SSGLVPRGSKITVNPESKAVLAGQFVKLCCRATGHPFVQYQWFKMN-----------KEI 59
Query: 89 HVTQEGTLRIQGVQKEDAGFFVCSALSVAGS-TTVRAFLQV----------TSVEDTPPP 137
L V +DAGF+VC + + + L V
Sbjct: 60 PNGNTSELIFNAVHVKDAGFYVCRVNNNFTFEFSQWSQLDVCDIPESFQRSVDGVSESKL 119
Query: 138 IVQVGPSNQTLPLHSVAFLPCQAVGSPPPHIRWYKNGNSLPPEDTRINVSSSGSLQI-DV 196
+ V P++Q L S L C AVGSP PH +W+KN L E + V
Sbjct: 120 QICVEPTSQKLMPGSTLVLQCVAVGSPIPHYQWFKNELPLTHET-------KKLYMVPYV 172
Query: 197 LRDD 200
+
Sbjct: 173 DLEH 176
Score = 104 bits (261), Expect = 3e-27
Identities = 31/162 (19%), Positives = 46/162 (28%), Gaps = 31/162 (19%)
Query: 1 MITEVKKSDEGKYQCYVQNMVGERETKPALLTVHAPP---------------SFVVRPQD 45
+ V D G Y C V N ++ + L V P V P
Sbjct: 68 IFNAVHVKDAGFYVCRVNNNFTFEFSQWSQLDVCDIPESFQRSVDGVSESKLQICVEPTS 127
Query: 46 QKVGLNGIASFQCVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKED 105
QK+ QCVA GSP+P W + L + + V E
Sbjct: 128 QKLMPGSTLVLQCVAVGSPIPHYQWFKNELP-----------LTHETKKLYMVPYVDLEH 176
Query: 106 AGFFVCSALSVAGSTTVRAFLQVTSVEDTPPPIVQVGPSNQT 147
G + C + S + + + P N+
Sbjct: 177 QGTYWCHVYNDRDSQDSKKVEIIIDE---LNNLGH--PDNKE 213
Score = 55.3 bits (133), Expect = 2e-09
Identities = 9/48 (18%), Positives = 21/48 (43%), Gaps = 1/48 (2%)
Query: 1 MITEVKKSDEGKYQCYVQNMVGERETKPALLTVHAPPSFVVRPQDQKV 48
M+ V +G Y C+V N +++K + + + P +++
Sbjct: 168 MVPYVDLEHQGTYWCHVYNDRDSQDSKKVEIIIDELNNL-GHPDNKEQ 214
>3o4o_C Interleukin-1 receptor type 2; cytokine-receptor complex,
beta-trefoil, IG-like fold, immun; HET: NAG; 3.30A {Homo
sapiens}
Length = 339
Score = 124 bits (311), Expect = 2e-33
Identities = 32/204 (15%), Positives = 64/204 (31%), Gaps = 18/204 (8%)
Query: 1 MITEVKKSDEGKYQCYVQNMVGERETKPALLTVHAPPS----FVVRPQDQKVGLNGI--- 53
+ + D G Y C +N + L V F+ PQ + +G+
Sbjct: 84 WLLPALQEDSGTYVCTTRNASYCDKMS-IELRVFENTDAFLPFISYPQILTLSTSGVLVC 142
Query: 54 ASFQCVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSA 113
+ W ++ + + L V L + V EDAG++ C
Sbjct: 143 PDLSEFTRDKTDVKIQWYKDSLLL---DKDNEKFLSVRGTTHLLVHDVALEDAGYYRCVL 199
Query: 114 ----LSVAGSTTVRAFLQVTSVEDTPPPIVQVGPSNQTLPLHSVAFLPCQA---VGSPPP 166
+ T L++ ++ P++ + L S +PC+ G+P
Sbjct: 200 TFAHEGQQYNITRSIELRIKKKKEETIPVIISPLKTISASLGSRLTIPCKVFLGTGTPLT 259
Query: 167 HIRWYKNGNSLPPEDTRINVSSSG 190
+ W+ ++ + G
Sbjct: 260 TMLWWTANDTHIESAYPGGRVTEG 283
Score = 120 bits (302), Expect = 4e-32
Identities = 43/292 (14%), Positives = 81/292 (27%), Gaps = 59/292 (20%)
Query: 32 TVHAPPSFVVRPQDQKVGLNGIASFQC-------VAEGSPLPSVFWTQEGSQVLMFPGNA 84
+ + + + +C A SP ++ W + S
Sbjct: 14 AARSCRFRGRHYKREFRLEGEPVALRCPQVPYWLWASVSPRINLTWHKNDSART--VPGE 71
Query: 85 YGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVTSVEDTPPPIVQVGPS 144
Q+G L + +ED+G +VC+ + + + L+V + +
Sbjct: 72 EETRMWAQDGALWLLPALQEDSGTYVCTTRNASYCDKMSIELRV---FENTDAFLPFISY 128
Query: 145 NQTLPLHSVAFLPCQ-----AVGSPPPHIRWYKNGNSLPPEDTR-INVSSSGSLQI-DVL 197
Q L L + L C I+WYK+ L ++ + ++V + L + DV
Sbjct: 129 PQILTLSTSGVLVCPDLSEFTRDKTDVKIQWYKDSLLLDKDNEKFLSVRGTTHLLVHDVA 188
Query: 198 RDD-------------------------------------FRAEPKDTRVASGETALLEC 220
+D + K + G + C
Sbjct: 189 LEDAGYYRCVLTFAHEGQQYNITRSIELRIKKKKEETIPVIISPLKTISASLGSRLTIPC 248
Query: 221 --GPPKGQPEPTLHW-KKNGQFIDLESSKRVSILGDPWFDSRRSRSIFGSVL 269
G P T+ W N I+ G S + + L
Sbjct: 249 KVFLGTGTPLTTMLWWTANDTHIESAYPGGRVTEGPRQEYSENNENYIEVPL 300
Score = 91.3 bits (226), Expect = 2e-21
Identities = 22/151 (14%), Positives = 45/151 (29%), Gaps = 23/151 (15%)
Query: 1 MITEVKKSDEGKYQCYVQNMVGERE---TKPALLTV-----HAPPSFVVRPQDQKVGLNG 52
++ +V D G Y+C + ++ T+ L + P + + L
Sbjct: 183 LVHDVALEDAGYYRCVLTFAHEGQQYNITRSIELRIKKKKEETIPVIISPLKTISASLGS 242
Query: 53 IASFQCVA---EGSPLPSVFWTQEGSQVLMFPGNA-----YGHLHVTQEG------TLRI 98
+ C G+PL ++ W + ++ L
Sbjct: 243 RLTIPCKVFLGTGTPLTTMLWWTANDTHIESAYPGGRVTEGPRQEYSENNENYIEVPLIF 302
Query: 99 QGVQKEDAGF-FVCSALSVAGSTTVRAFLQV 128
V +ED F C + T+R ++
Sbjct: 303 DPVTREDLHMDFKCVVHNTLSFQTLRTTVKE 333
Score = 73.2 bits (179), Expect = 5e-15
Identities = 25/181 (13%), Positives = 51/181 (28%), Gaps = 46/181 (25%)
Query: 117 AGSTTVRAFLQVTSVEDTPPPIVQVGPSNQTLPLHSVAFLPC-------QAVGSPPPHIR 169
A T++ + + L C A SP ++
Sbjct: 1 ADPFTLQPAAHTGAARS--CRFRGRHYKREFRLEGEPVALRCPQVPYWLWASVSPRINLT 58
Query: 170 WYKNGNSLPP---EDTRI-----------------------------NVSSSGSLQIDVL 197
W+KN ++ E+TR+ S L++
Sbjct: 59 WHKNDSARTVPGEEETRMWAQDGALWLLPALQEDSGTYVCTTRNASYCDKMSIELRVFEN 118
Query: 198 RDDFRAE-PKDTRVASGETALLEC----GPPKGQPEPTLHWKKNGQFIDLESSKRVSILG 252
D F + + +L C + + + + W K+ +D ++ K +S+ G
Sbjct: 119 TDAFLPFISYPQILTLSTSGVLVCPDLSEFTRDKTDVKIQWYKDSLLLDKDNEKFLSVRG 178
Query: 253 D 253
Sbjct: 179 T 179
>1nbq_A JAM, junctional adhesion molecule 1, PAM-1; reovirus receptor,
tight junction formation, immunoglobulin superfamily,
immune system; 2.90A {Homo sapiens} SCOP: b.1.1.1
b.1.1.4 PDB: 3eoy_G
Length = 209
Score = 119 bits (299), Expect = 6e-33
Identities = 29/139 (20%), Positives = 48/139 (34%), Gaps = 7/139 (5%)
Query: 1 MITEVKKSDEGKYQCYVQNMVGERETKPAL-LTVHAPPSFVVRPQDQKVGLNGIASFQC- 58
V + D G Y C V G + + L V PPS + A C
Sbjct: 71 TFKSVTREDTGTYTCMVSEEGGNSYGEVKVKLIVLVPPSKPTVNIPSSATIGNRAVLTCS 130
Query: 59 VAEGSPLPSVFWTQEGSQVLMFP-----GNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSA 113
+GSP W ++G + P + ++ G L + D G + C A
Sbjct: 131 EQDGSPPSEYTWFKDGIVMPTNPKSTRAFSNSSYVLNPTTGELVFDPLSASDTGEYSCEA 190
Query: 114 LSVAGSTTVRAFLQVTSVE 132
+ G+ +++ +VE
Sbjct: 191 RNGYGTPMTSNAVRMEAVE 209
Score = 116 bits (292), Expect = 8e-32
Identities = 32/186 (17%), Positives = 58/186 (31%), Gaps = 22/186 (11%)
Query: 35 APPSFVV--RPQDQKVGLNGIASFQCVAEGSPLPSVFWTQEGSQVLMFPGN------AYG 86
A S V + ++ N C G P V W + +Y
Sbjct: 1 AMGSVTVHSSEPEVRIPENNPVKLSCAYSGFSSPRVEWKFDQGDTTRLVCYNNKITASYE 60
Query: 87 HLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVTSVEDTPPPIVQVGPSNQ 146
+ + V +ED G + C G++ +++ + PP
Sbjct: 61 DRVTFLPTGITFKSVTREDTGTYTCMVSEEGGNSYGEVKVKLIVLV---PPSKPTVNIPS 117
Query: 147 TLPLHSVAFLPCQAV-GSPPPHIRWYKNGNSLPP---------EDTRINVSSSGSLQI-D 195
+ + + A L C GSPP W+K+G +P + + ++G L
Sbjct: 118 SATIGNRAVLTCSEQDGSPPSEYTWFKDGIVMPTNPKSTRAFSNSSYVLNPTTGELVFDP 177
Query: 196 VLRDDF 201
+ D
Sbjct: 178 LSASDT 183
Score = 85.0 bits (210), Expect = 6e-20
Identities = 20/161 (12%), Positives = 32/161 (19%), Gaps = 41/161 (25%)
Query: 134 TPPPIVQVGPSNQTLPLHSVAFLPCQAVGSPPPHIRWYKNGNSLPPEDTRIN-------- 185
V +P ++ L C G P + W + N
Sbjct: 2 MGSVTVHSSEPEVRIPENNPVKLSCAYSGFSSPRVEWKFDQGDTTRLVCYNNKITASYED 61
Query: 186 --VSSSGSLQI-DVLRDD------------------------------FRAEPKDTRVAS 212
+ V R+D +
Sbjct: 62 RVTFLPTGITFKSVTREDTGTYTCMVSEEGGNSYGEVKVKLIVLVPPSKPTVNIPSSATI 121
Query: 213 GETALLECGPPKGQPEPTLHWKKNGQFIDLESSKRVSILGD 253
G A+L C G P W K+G + +
Sbjct: 122 GNRAVLTCSEQDGSPPSEYTWFKDGIVMPTNPKSTRAFSNS 162
Score = 39.9 bits (93), Expect = 3e-04
Identities = 8/50 (16%), Positives = 12/50 (24%), Gaps = 1/50 (2%)
Query: 205 PKDTRVASGETALLECGPPKGQPEPTLHWKKNGQFIDLESSKRVSILGDP 254
+ R+ L C G P + WK + I
Sbjct: 11 EPEVRIPENNPVKLSC-AYSGFSSPRVEWKFDQGDTTRLVCYNNKITASY 59
>3oq3_B IFN-alpha/beta binding protein C12R; mousepox virus, moscow strain,
cytokine decoy RE virus/viral protein, type-1
interferon, soluble A/B-IFNR; HET: EPE; 2.10A
{Ectromelia virus}
Length = 329
Score = 121 bits (305), Expect = 1e-32
Identities = 29/218 (13%), Positives = 60/218 (27%), Gaps = 23/218 (10%)
Query: 1 MITEVKKSDEG-KYQCYVQNMVGERETKPALLTVHAPPSFVVRPQDQKVGLNGIASFQC- 58
I +D +Y C V G+ + PPS + + C
Sbjct: 92 WIANYTSNDSHRRYLCTVTTKNGDCVQGIVRSHIRKPPSCIPETYELGTHDKYGIDLYCG 151
Query: 59 VAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAG 118
+ ++ W + ++++ G + L I + ED+G + C
Sbjct: 152 ILYAKHYNNITWYKNNQELII-----DGTKYSQSGQNLIIHNPELEDSGRYDCYVHYDDV 206
Query: 119 ----STTVRAFLQVTSVEDTPPPIVQVGPSNQTLPLHSVAFLPCQAVGSP----PPHIRW 170
V +T + + + + A + C AV + I W
Sbjct: 207 RIKNDIVVSRCKILTVIPSQDHRFKLILDPKINVTIGEPANITCTAVSTSLLVDDVLIDW 266
Query: 171 YKNGNSLPPEDTRI-------NVSSSGSLQI-DVLRDD 200
+ D + + +L +V +
Sbjct: 267 ENPSGWIIGLDFGVYSILTSSGGITEATLYFENVTEEY 304
Score = 99.5 bits (247), Expect = 2e-24
Identities = 46/283 (16%), Positives = 72/283 (25%), Gaps = 65/283 (22%)
Query: 22 GERETKPA-LLTVHAPPSFVVRPQDQKVGLNGIASFQCVAEGSPL---------PSVFWT 71
R+T PA P + L S +C L V W
Sbjct: 14 KMRDTLPAKDSKWLNPSCMFGGTMNDMAALGEPFSAKCPPIEDSLLSHRYNDKDNVVNWE 73
Query: 72 QEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAG-FFVCSALSVAGSTTVRAFLQVTS 130
+ G P N + G L I D+ ++C+ + G V+ ++
Sbjct: 74 KIGKTRR--PLN-----RRVKNGDLWIANYTSNDSHRRYLCTVTTKNG-DCVQGIVRSHI 125
Query: 131 VEDTPPPIVQVGPSNQTLPLHSVAFLPCQAV-GSPPPHIRWYKNGNSLPPEDTRINVSSS 189
+ PP L C + +I WYKN L + T+ S
Sbjct: 126 RK---PPSCIPETYELGTHDKYGIDLYCGILYAKHYNNITWYKNNQELIIDGTKY-SQSG 181
Query: 190 GSLQI-DVLRDD-------------------------------------FRAEPKDTRVA 211
+L I + +D V
Sbjct: 182 QNLIIHNPELEDSGRYDCYVHYDDVRIKNDIVVSRCKILTVIPSQDHRFKLILDPKINVT 241
Query: 212 SGETALLEC---GPPKGQPEPTLHWKKNGQFIDLESSKRVSIL 251
GE A + C + + W+ +I SIL
Sbjct: 242 IGEPANITCTAVSTSLLVDDVLIDWENPSGWIIGLDFGVYSIL 284
Score = 91.4 bits (226), Expect = 2e-21
Identities = 26/144 (18%), Positives = 48/144 (33%), Gaps = 16/144 (11%)
Query: 1 MITEVKKSDEGKYQCYVQNMVGERE-----TKPALLTVHAPPS---FVVRPQDQKVGLNG 52
+I + D G+Y CYV + ++ +LTV ++ V +
Sbjct: 185 IIHNPELEDSGRYDCYVHYDDVRIKNDIVVSRCKILTVIPSQDHRFKLILDPKINVTIGE 244
Query: 53 IASFQCVAEGSPLP----SVFWTQEGSQVLMFPGNAYGHL---HVTQEGTLRIQGVQKED 105
A+ C A + L + W ++ Y L E TL + V +E
Sbjct: 245 PANITCTAVSTSLLVDDVLIDWENPSGWIIGLDFGVYSILTSSGGITEATLYFENVTEEY 304
Query: 106 AGF-FVCSALSVAGSTTVRAFLQV 128
G + C + T+ + +
Sbjct: 305 IGNTYTCRGHNYYFDKTLTTTVVL 328
>3lcy_A Titin; A-BAND, IG tandem domains, ATP-binding, calmodulin-BI
cardiomyopathy, disease mutation, disulfide bond,
immunoglo domain, isopeptide bond; 2.50A {Homo sapiens}
Length = 197
Score = 117 bits (296), Expect = 1e-32
Identities = 31/162 (19%), Positives = 54/162 (33%), Gaps = 8/162 (4%)
Query: 36 PPSFVVRPQDQKVGLNGIASFQCVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGT 95
P +D L A C G PLP + W + G ++ Y + T
Sbjct: 7 APGIRKEMKDVTTKLGEAAQLSCQIVGRPLPDIKWYRFGKEL--IQSRKYKMSSDGRTHT 64
Query: 96 LRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVTSVEDTPPPIVQVGPSNQTLPLHSVAF 155
L + ++ED G + C A + G + L + + P + S
Sbjct: 65 LTVMTEEQEDEGVYTCIATNEVGEVETSSKLLLQATPQFHPGYPL--KEKYYGAVGSTLR 122
Query: 156 LPCQAVGSPPPHIRWYKNGNSLPPEDTRINVSSSG---SLQI 194
L +G P P + W+ L + I + ++ L +
Sbjct: 123 LHVMYIGRPVPAMTWFHGQKLLQNSE-NITIENTEHYTHLVM 163
Score = 106 bits (266), Expect = 4e-28
Identities = 26/136 (19%), Positives = 51/136 (37%), Gaps = 13/136 (9%)
Query: 1 MITEVKKSDEGKYQCYVQNMVGERETKPALLTVHAPPSFVVR---PQDQKVGLNGIASFQ 57
+ ++ DEG Y C N VGE ET + L + A P F + +
Sbjct: 66 TVMTEEQEDEGVYTCIATNEVGEVETS-SKLLLQATPQFHPGYPLKEKYYGAVGSTLRLH 124
Query: 58 CVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEG---TLRIQGVQKE-DAGFFVCSA 113
+ G P+P++ W + ++ + L ++ VQ++ AG +
Sbjct: 125 VMYIGRPVPAMTWFHGQKLL-----QNSENITIENTEHYTHLVMKNVQRKTHAGKYKVQL 179
Query: 114 LSVAGSTTVRAFLQVT 129
+V G+ +++
Sbjct: 180 SNVFGTVDAILDVEIQ 195
Score = 97.5 bits (243), Expect = 8e-25
Identities = 34/160 (21%), Positives = 55/160 (34%), Gaps = 40/160 (25%)
Query: 130 SVEDTPPPIVQVGPSNQTLPLHSVAFLPCQAVGSPPPHIRWYKNGNSLPPEDTRINVSSS 189
++ P I + + T L A L CQ VG P P I+WY+ G L + +SS
Sbjct: 2 AMSGEAPGIRK-EMKDVTTKLGEAAQLSCQIVGRPLPDIKWYRFGKELIQ-SRKYKMSSD 59
Query: 190 G---SLQI-DVLRDD-----FRAE--------------------------PKDTRVASGE 214
G +L + ++D A + A G
Sbjct: 60 GRTHTLTVMTEEQEDEGVYTCIATNEVGEVETSSKLLLQATPQFHPGYPLKEKYYGAVGS 119
Query: 215 TALLECGPPKGQPEPTLHWKKNGQFIDLESSKRVSILGDP 254
T L G+P P + W + L++S+ ++I
Sbjct: 120 TLRLHV-MYIGRPVPAMTWFHGQK--LLQNSENITIENTE 156
>1f97_A Junction adhesion molecule; immunoglobulin superfamily,
beta-sandwich fold, cell adhesion; 2.50A {Mus musculus}
SCOP: b.1.1.1 b.1.1.4
Length = 212
Score = 118 bits (296), Expect = 2e-32
Identities = 35/182 (19%), Positives = 51/182 (28%), Gaps = 21/182 (11%)
Query: 37 PSFVVRPQDQKVGLNGIASFQCVAEGSPLPSVFWTQEGSQVLMF------PGNAYGHLHV 90
S D +V N C G P V W Y
Sbjct: 2 GSVYTAQSDVQVPENESIKLTCTYSGFSSPRVEWKFVQGSTTALVCYNSQITAPYADRVT 61
Query: 91 TQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVTSVEDTPPPIVQVGPSNQTLPL 150
+ V ++D G + C G + +T + PP ++ +
Sbjct: 62 FSSSGITFSSVTRKDNGEYTCMVSEEGGQNYGEVSIHLTVLV---PPSKPTISVPSSVTI 118
Query: 151 HSVAFLPCQAV-GSPPPHIRWYKNGNSLPPED----------TRINVSSSGSLQI-DVLR 198
+ A L C GSPP W+K+G S+ D + SG L V
Sbjct: 119 GNRAVLTCSEHDGSPPSEYSWFKDGISMLTADAKKTRAFMNSSFTIDPKSGDLIFDPVTA 178
Query: 199 DD 200
D
Sbjct: 179 FD 180
Score = 116 bits (291), Expect = 1e-31
Identities = 31/147 (21%), Positives = 50/147 (34%), Gaps = 12/147 (8%)
Query: 1 MITEVKKSDEGKYQCYVQNMVGERETKPAL-LTVHAPPSFVVRPQDQKVGLNGIASFQC- 58
+ V + D G+Y C V G+ + ++ LTV PPS V + A C
Sbjct: 68 TFSSVTRKDNGEYTCMVSEEGGQNYGEVSIHLTVLVPPSKPTISVPSSVTIGNRAVLTCS 127
Query: 59 VAEGSPLPSVFWTQEGSQVLMFPGNAY------GHLHVTQEGTLRIQGVQKEDAGFFVCS 112
+GSP W ++G +L + G L V D+G + C
Sbjct: 128 EHDGSPPSEYSWFKDGISMLTADAKKTRAFMNSSFTIDPKSGDLIFDPVTAFDSGEYYCQ 187
Query: 113 ALSVAGSTTVRAFLQVTSVEDTPPPIV 139
A + G+ + + V
Sbjct: 188 AQNGYGTAMRSEAAHMDA----VELNV 210
Score = 83.5 bits (206), Expect = 2e-19
Identities = 25/158 (15%), Positives = 37/158 (23%), Gaps = 41/158 (25%)
Query: 137 PIVQVGPSNQTLPLHSVAFLPCQAVGSPPPHIRWYKNGNSLPP----------EDTRINV 186
V S+ +P + L C G P + W S
Sbjct: 2 GSVYTAQSDVQVPENESIKLTCTYSGFSSPRVEWKFVQGSTTALVCYNSQITAPYADRVT 61
Query: 187 SSSGSLQI-DVLRDD------------------------------FRAEPKDTRVASGET 215
SS + V R D + V G
Sbjct: 62 FSSSGITFSSVTRKDNGEYTCMVSEEGGQNYGEVSIHLTVLVPPSKPTISVPSSVTIGNR 121
Query: 216 ALLECGPPKGQPEPTLHWKKNGQFIDLESSKRVSILGD 253
A+L C G P W K+G + +K+ +
Sbjct: 122 AVLTCSEHDGSPPSEYSWFKDGISMLTADAKKTRAFMN 159
>3s97_C Contactin-1; carbonic anhdyrase like immunoglobulin, cell adhesion
comple adhesion; HET: NAG; 2.30A {Homo sapiens}
Length = 201
Score = 114 bits (288), Expect = 2e-31
Identities = 32/139 (23%), Positives = 57/139 (41%), Gaps = 15/139 (10%)
Query: 1 MITEVKKSDEGKYQCYVQNMVGERETKPALLTV---------HAPPSFVVRPQDQKVGLN 51
I V+ SD+G Y C+V + + + + P VV+ +D +
Sbjct: 69 YIANVEASDKGNYSCFVSSPSITKSVFSKFIPLIPIPERTTKPYPADIVVQFKDVYALMG 128
Query: 52 GIASFQCVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVC 111
+ +C A G+P+P + W + + P A T L+I +Q ED G + C
Sbjct: 129 QNVTLECFALGNPVPDIRWRKVLEPM---PSTAE---ISTSGAVLKIFNIQLEDEGIYEC 182
Query: 112 SALSVAGSTTVRAFLQVTS 130
A ++ G +A + V +
Sbjct: 183 EAENIRGKDKHQARIYVQA 201
Score = 113 bits (285), Expect = 6e-31
Identities = 32/177 (18%), Positives = 53/177 (29%), Gaps = 12/177 (6%)
Query: 32 TVHAPPSFVVRPQDQKVGLNGIASFQCVAEGSPLP--SVFWTQEGSQVLMFPGNAYGHLH 89
+ + P + +V C S W V +
Sbjct: 4 SGYLDPFPPEERPEVRVKEGKGMVLLCDPPYHFPDDLSYRWLLNEFPVFITMDK--RRFV 61
Query: 90 VTQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVTSVEDT-----PPPIVQVGPS 144
G L I V+ D G + C S + + +V + P + V
Sbjct: 62 SQTNGNLYIANVEASDKGNYSCFVSSPSITKSVFSKFIPLIPIPERTTKPYPADIVVQFK 121
Query: 145 NQTLPLHSVAFLPCQAVGSPPPHIRWYKNGNSLPPEDTRINVSSSGSLQI-DVLRDD 200
+ + L C A+G+P P IRW K +P S L+I ++ +D
Sbjct: 122 DVYALMGQNVTLECFALGNPVPDIRWRKVLEPMPSTAEIST--SGAVLKIFNIQLED 176
Score = 57.6 bits (139), Expect = 3e-10
Identities = 14/59 (23%), Positives = 22/59 (37%), Gaps = 1/59 (1%)
Query: 196 VLRDDFRAEPKDTRVASGETALLECGPPKGQPEP-TLHWKKNGQFIDLESSKRVSILGD 253
L E + RV G+ +L C PP P+ + W N + + KR +
Sbjct: 6 YLDPFPPEERPEVRVKEGKGMVLLCDPPYHFPDDLSYRWLLNEFPVFITMDKRRFVSQT 64
>2y23_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin-
like; 2.50A {Homo sapiens}
Length = 312
Score = 117 bits (293), Expect = 5e-31
Identities = 33/227 (14%), Positives = 59/227 (25%), Gaps = 27/227 (11%)
Query: 1 MITEVKKSDEGKYQCYVQNMVGERETKPALLTV-----------HAPPSFVVRPQDQKVG 49
++ D G Y C V + G + P V ++
Sbjct: 61 TFKDLGMDDLGIYSCDVTDTDGIASSYLIDEEELKRLLALSHEHKFPTVPVKSELAVEIL 120
Query: 50 LNGIASFQC-VAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGF 108
G F + S V + ++ P T + ++ +Q ED G
Sbjct: 121 EKGQVRFWMQAEKLSGNAKVNYIFNEKEIFEGPKYKMHIDRNTGIIEMFMEKLQDEDEGT 180
Query: 109 FVCSALSVAGSTTVRAFLQVTSVE--------DTPPPIVQVGPSNQTLPLHSV-----AF 155
+ + L + I + GP V
Sbjct: 181 YTFQLQDGKATNHSTVVLVGDVFKKLQKEAEFQRQEWIRKQGPHFVEYLSWEVTGECNVL 240
Query: 156 LPCQAVGSPPP-HIRWYKNGNSLPPEDTRINVSSSGSLQI-DVLRDD 200
L C+ HI WYK+ + ++ +L I + + D
Sbjct: 241 LKCKVANIKKETHIVWYKDEREISVDEKHDFKDGICTLLITEFSKKD 287
Score = 108 bits (272), Expect = 6e-28
Identities = 27/277 (9%), Positives = 71/277 (25%), Gaps = 64/277 (23%)
Query: 36 PPSFVVRPQDQKVGLNGIASFQCVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGT 95
P + +F+C + +P W+++ +
Sbjct: 3 DPFTKEVVVNVDDDGVISLNFEC-DKMTPKSEFSWSKDYVST--EDSPRLEVESKGNKTK 59
Query: 96 LRIQGVQKEDAGFFVCSALSVAGSTT--------VRAFLQVTSVEDTPPPIVQVGPSNQT 147
+ + + +D G + C G + ++ L ++ P V+ + +
Sbjct: 60 MTFKDLGMDDLGIYSCDVTDTDGIASSYLIDEEELKRLLALSHEHKFPTVPVKSELAVEI 119
Query: 148 LPLHSVAFLPCQAVGSPPPHIRWYKNGNSLPP-EDTRINVSSSG---SLQI-DVLRDD-- 200
L V F S + + N + ++++ + + + + +D
Sbjct: 120 LEKGQVRFWMQAEKLSGNAKVNYIFNEKEIFEGPKYKMHIDRNTGIIEMFMEKLQDEDEG 179
Query: 201 ---FRA-----------------------------------------EPKDTRVASGETA 216
F+ E V
Sbjct: 180 TYTFQLQDGKATNHSTVVLVGDVFKKLQKEAEFQRQEWIRKQGPHFVEYLSWEVTGECNV 239
Query: 217 LLECGPPKGQPEPTLHWKKNGQFIDLESSKRVSILGD 253
LL+C + E + W K+ + ++ ++
Sbjct: 240 LLKCKVANIKKETHIVWYKDER--EISVDEKHDFKDG 274
Score = 76.6 bits (188), Expect = 3e-16
Identities = 20/147 (13%), Positives = 38/147 (25%), Gaps = 24/147 (16%)
Query: 1 MITEVKKSDEGKYQCYVQNMVGERETKPALLTVHAPPSF------------------VVR 42
+ +++ DEG Y +Q+ + +L V
Sbjct: 169 FMEKLQDEDEGTYTFQLQDGKATNHST-VVLVGDVFKKLQKEAEFQRQEWIRKQGPHFVE 227
Query: 43 PQDQKVGLNGIASFQCVAEGSPLP-SVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGV 101
+V +C + W ++ ++ + TL I
Sbjct: 228 YLSWEVTGECNVLLKCKVANIKKETHIVWYKDEREI--SVDEKH--DFKDGICTLLITEF 283
Query: 102 QKEDAGFFVCSALSVAGSTTVRAFLQV 128
K+DAG + G R L
Sbjct: 284 SKKDAGIYEVILKDDRGKDKSRLKLVD 310
>2ch8_A BARF1, P33, 33 kDa early protein; viral protein, immunoglobulin
domain, oncogene; HET: NAG MAN; 2.3A {Epstein-barr
virus}
Length = 201
Score = 112 bits (282), Expect = 2e-30
Identities = 34/187 (18%), Positives = 53/187 (28%), Gaps = 31/187 (16%)
Query: 17 VQNMVGERETKPA-LLTVHAPPS-----FVVRPQDQKVGLNGIASFQCVAEGSPLPSVFW 70
V +GER T + V P F + P +++V L G + P F
Sbjct: 1 VTAFLGERVTLTSYWRRVSLGPEIEVSWFKLGPGEEQV-LIGRMHHDVIFIEWPFRGFFD 59
Query: 71 TQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVTS 130
+ L + G ++C T + L V
Sbjct: 60 IHRSAN----------------TFFLVVTAANISHDGNYLCRMKLGETEVTKQEHLSVV- 102
Query: 131 VEDTPPPIVQVGPSNQTLPLHSVAFLPCQAVGSPPPHIRWYKNGNSLP---PEDTRINVS 187
P + V P SV + C P PH++W P + +
Sbjct: 103 ----KPLTLSVHSERSQFPDFSVLTVTCTVNAFPHPHVQWLMPEGVEPAPTAANGGVMKE 158
Query: 188 SSGSLQI 194
GSL +
Sbjct: 159 KDGSLSV 165
Score = 103 bits (258), Expect = 5e-27
Identities = 22/123 (17%), Positives = 41/123 (33%), Gaps = 5/123 (4%)
Query: 1 MITEVKKSDEGKYQCYVQNMVGERETKPALLTVHAPPSFVVRPQDQKVGLNGIASFQCVA 60
++T S +G Y C ++ E + L+V P + V + + + + C
Sbjct: 70 VVTAANISHDGNYLCRMKLGETEVTKQ-EHLSVVKPLTLSVHSERSQFPDFSVLTVTCTV 128
Query: 61 EGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQ---GVQKEDAGFFVCSALSVA 117
P P V W P A G + ++G+L + + K C +
Sbjct: 129 NAFPHPHVQWLMPEGVEPA-PTAANGGVMKEKDGSLSVAVDLSLPKPWHLPVTCVGKNDK 187
Query: 118 GST 120
Sbjct: 188 EEA 190
Score = 49.3 bits (117), Expect = 3e-07
Identities = 18/149 (12%), Positives = 40/149 (26%), Gaps = 24/149 (16%)
Query: 127 QVTSVEDTPPPIVQ---VGPSNQTLPLHSVAFLPCQAVGSPPPHIRW-YKNGNSLPPEDT 182
V P V +GP + + + + + P +++ N+ T
Sbjct: 14 YWRRVSLGPEIEVSWFKLGPGEEQVLIGRMHH-DVIFIEWPFRGFFDIHRSANTFFLVVT 72
Query: 183 RINVSSSG---------------SLQIDVLR-DDFRAEPKDTRVASGETALLECGPPKGQ 226
N+S G + V++ + ++ + C
Sbjct: 73 AANISHDGNYLCRMKLGETEVTKQEHLSVVKPLTLSVHSERSQFPDFSVLTVTC-TVNAF 131
Query: 227 PEPTLHWKKNG--QFIDLESSKRVSILGD 253
P P + W + ++ V D
Sbjct: 132 PHPHVQWLMPEGVEPAPTAANGGVMKEKD 160
>2c5d_C AXL oncogene, tyrosine-protein kinase receptor UFO; signaling
protein/receptor, growth regulation/complex, vitamin
K-dependent protein; HET: NAG; 3.3A {Homo sapiens}
Length = 195
Score = 112 bits (281), Expect = 2e-30
Identities = 34/127 (26%), Positives = 55/127 (43%), Gaps = 10/127 (7%)
Query: 1 MITEVKKSDEGKYQCYVQNMVGERETKPALLTVHAPPSFVVRPQDQKVGLNGIASFQCVA 60
IT ++ SD G+YQC V ++P + + P F+ P+D+ V N + C A
Sbjct: 71 RITSLQLSDTGQYQCLVFLGHQTFVSQPGYVGLEGLPYFLEEPEDRTVAANTPFNLSCQA 130
Query: 61 EGSPLP-SVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGS 119
+G P P + W Q+ + PG+ + +L + G+ F C A + G
Sbjct: 131 QGPPEPVDLLWLQDAVPLATAPGHG-------PQRSLHVPGL--NKTSSFSCEAHNAKGV 181
Query: 120 TTVRAFL 126
TT R
Sbjct: 182 TTSRTAT 188
Score = 110 bits (277), Expect = 7e-30
Identities = 31/174 (17%), Positives = 54/174 (31%), Gaps = 18/174 (10%)
Query: 36 PPSFVVRPQDQKVGLNGIASFQCVAE-GSPLPSVFWTQEGSQV-------LMFPGNAYGH 87
FV P + + +C + P V W ++G + P
Sbjct: 2 ESPFVGNPGNITGARGLTGTLRCQLQVQGEPPEVHWLRDGQILELADSTQTQVPLGEDEQ 61
Query: 88 LHVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVR-AFLQVTSVEDTPPPIVQVGPSNQ 146
LRI +Q D G + C + + ++ + P P ++
Sbjct: 62 DDWIVVSQLRITSLQLSDTGQYQCLVFLGHQTFVSQPGYVGLEG-----LPYFLEEPEDR 116
Query: 147 TLPLHSVAFLPCQAVGSPPP-HIRWYKNGNSLPPEDTRINVSSSGSLQIDVLRD 199
T+ ++ L CQA G P P + W ++ L SL + L
Sbjct: 117 TVAANTPFNLSCQAQGPPEPVDLLWLQDAVPLATAPGH---GPQRSLHVPGLNK 167
Score = 75.3 bits (185), Expect = 1e-16
Identities = 33/153 (21%), Positives = 46/153 (30%), Gaps = 45/153 (29%)
Query: 135 PPPIVQVGPSNQTLPLHSVAFLPCQA-VGSPPPHIRWYKNGNSLPP-----------EDT 182
P V P N T L CQ V PP + W ++G L ED
Sbjct: 2 ESPFVG-NPGNITGARGLTGTLRCQLQVQGEPPEVHWLRDGQILELADSTQTQVPLGEDE 60
Query: 183 RINVSSSGSLQI-DVLRDD-----------------------------FRAEPKDTRVAS 212
+ + L+I + D F EP+D VA+
Sbjct: 61 QDDWIVVSQLRITSLQLSDTGQYQCLVFLGHQTFVSQPGYVGLEGLPYFLEEPEDRTVAA 120
Query: 213 GETALLECGPPKGQPEPT-LHWKKNGQFIDLES 244
L C +G PEP L W ++ +
Sbjct: 121 NTPFNLSC-QAQGPPEPVDLLWLQDAVPLATAP 152
Score = 59.1 bits (143), Expect = 9e-11
Identities = 18/69 (26%), Positives = 28/69 (40%), Gaps = 3/69 (4%)
Query: 201 FRAEPKDTRVASGETALLECGPPKGQPEPTLHWKKNGQFIDLESSKRVSILGDPWFDSRR 260
F P + A G T L C P +HW ++GQ ++L S + + P + +
Sbjct: 5 FVGNPGNITGARGLTGTLRCQLQVQGEPPEVHWLRDGQILELADSTQTQV---PLGEDEQ 61
Query: 261 SRSIFGSVL 269
I S L
Sbjct: 62 DDWIVVSQL 70
Score = 38.0 bits (88), Expect = 0.001
Identities = 7/36 (19%), Positives = 13/36 (36%), Gaps = 1/36 (2%)
Query: 2 ITEVKKSDEGKYQCYVQNMVGERETKPALLTVHAPP 37
+ + + C N G ++ A +TV P
Sbjct: 160 LHVPGLNKTSSFSCEAHNAKGVTTSRTATITV-LPQ 194
>3u83_A Poliovirus receptor-related protein 1; nectin-1, hinge region
plasiticity, cell adhesion; HET: PG6; 2.50A {Homo
sapiens} PDB: 3alp_A* 3u82_B 3sku_E* 2l7j_A
Length = 331
Score = 114 bits (286), Expect = 7e-30
Identities = 32/207 (15%), Positives = 51/207 (24%), Gaps = 14/207 (6%)
Query: 1 MITEVKKSDEGKYQCYVQNMVGERETKPALLTVHAPPSFVVRPQDQKVGLNGIASFQ--- 57
++ ++ DEG Y C LTV A P+ + + +
Sbjct: 95 RLSRLELEDEGVYICEFATFPTGNRESQLNLTVMAKPTNWIEGTQAVLRAKKGQDDKVLV 154
Query: 58 ---CVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSAL 114
A G P V W + + VT R+ ++ C
Sbjct: 155 ATCTSANGKPPSVVSWETRLKGEAEYQEIRNPNGTVTVISRYRLVPSREAHQQSLACIVN 214
Query: 115 SVAGSTTVRAFLQVTSVEDTPPPIVQVGPSNQTLPLHSVAFLPCQAVGSPPPH-IRWYKN 173
L V P + G L C+A +PP W
Sbjct: 215 YHMDRFKESLTLNVQY----EPEVTIEGFDGNWYLQRMDVKLTCKADANPPATEYHWTTL 270
Query: 174 GNSLPPEDTRINVSSSGSLQIDVLRDD 200
SLP + + +
Sbjct: 271 NGSLPK---GVEAQNRTLFFKGPINYS 294
Score = 81.3 bits (200), Expect = 6e-18
Identities = 30/262 (11%), Positives = 56/262 (21%), Gaps = 58/262 (22%)
Query: 34 HAPPSFVVRPQDQKVGLNGIASFQCVAEGSP----LPSVFWTQEGSQV------------ 77
P V + C + V W + +
Sbjct: 12 RDPSQVVQVNDSMYGFIGTDVVLHCSFANPLPSVKITQVTWQKSTNGSKQNVAIYNPSMG 71
Query: 78 LMFPGNAYGHLHVT----QEGTLRIQGVQKEDAGFFVCSALS-VAGSTTVRAFLQVTSVE 132
+ + +GT+R+ ++ ED G ++C + G+ + L V +
Sbjct: 72 VSVLAPYRERVEFLRPSFTDGTIRLSRLELEDEGVYICEFATFPTGNRESQLNLTVMAKP 131
Query: 133 DTPPPIVQVGPSNQTLPLHSVAFLPCQAV-GSPPPHIRWYKNGNSLP----PEDTRINVS 187
Q + V C + G PP + W + V+
Sbjct: 132 TNWIEGTQAVLRAKKGQDDKVLVATCTSANGKPPSVVSWETRLKGEAEYQEIRNPNGTVT 191
Query: 188 SSGSLQIDVLRDDFRAE------------------------------PKDTRVASGETAL 217
++ R+ +
Sbjct: 192 VISRYRLVPSREAHQQSLACIVNYHMDRFKESLTLNVQYEPEVTIEGFDGNWYLQRMDVK 251
Query: 218 LECGPPKGQPEPT-LHWKKNGQ 238
L C P T HW
Sbjct: 252 LTC-KADANPPATEYHWTTLNG 272
Score = 80.6 bits (198), Expect = 1e-17
Identities = 18/148 (12%), Positives = 44/148 (29%), Gaps = 15/148 (10%)
Query: 1 MITEVKKSDEGKYQCYVQNMVGERETKPALLTVHAPPSFVVRPQDQKVGLNG-IASFQCV 59
+ +++ + C V + + + L V P + D L C
Sbjct: 197 RLVPSREAHQQSLACIVNYHMDRFK-ESLTLNVQYEPEVTIEGFDGNWYLQRMDVKLTCK 255
Query: 60 AEGSPLPS-VFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAG 118
A+ +P + WT + + + AG ++C A + G
Sbjct: 256 ADANPPATEYHWTTLNGSLP-------KGVEAQNRTLFFKGPINYSLAGTYICEATNPIG 308
Query: 119 STTVRAFLQVTSVEDTPPPIVQVGPSNQ 146
+ + + + + T ++ +
Sbjct: 309 TRSGQVEVNI-----TEAAALEHHHHHH 331
Score = 30.5 bits (68), Expect = 0.61
Identities = 10/66 (15%), Positives = 16/66 (24%), Gaps = 3/66 (4%)
Query: 205 PKDTRVASGETALLEC---GPPKGQPEPTLHWKKNGQFIDLESSKRVSILGDPWFDSRRS 261
G +L C P + W+K+ + +G R
Sbjct: 21 NDSMYGFIGTDVVLHCSFANPLPSVKITQVTWQKSTNGSKQNVAIYNPSMGVSVLAPYRE 80
Query: 262 RSIFGS 267
R F
Sbjct: 81 RVEFLR 86
>4dep_C Interleukin-1 receptor accessory protein; B-trefoil,
immunoglobulin, immune system, extracellular; HET: NAG;
3.10A {Homo sapiens} PDB: 3o4o_B*
Length = 349
Score = 108 bits (269), Expect = 2e-27
Identities = 29/214 (13%), Positives = 55/214 (25%), Gaps = 27/214 (12%)
Query: 1 MITEVKKSDEGKYQCYVQNMVGERETKPALLTVHAPPS----FVVRPQDQKVGLNGIASF 56
+D G Y C ++N + L V S + P + GI
Sbjct: 82 WFRPTLLNDTGNYTCMLRNTTYCSKVA-FPLEVVQKDSCFNSPMKLPVHKLYIEYGIQRI 140
Query: 57 QC-----VAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVC 111
C S P++ W ++ + + + L + G + C
Sbjct: 141 TCPNVDGYFPSSVKPTITWYMGCYKIQN------FNNVIPEGMNLSFLIALISNNGNYTC 194
Query: 112 SA----LSVAGSTTVRAFLQVTSVEDTPPPIVQVGPSNQTL---PLHSVAFLPCQAV--- 161
T ++V P V P++ + +PC
Sbjct: 195 VVTYPENGRTFHLTRTLTVKVVGSPKNAVPPVIHSPNDHVVYEKEPGEELLIPCTVYFSF 254
Query: 162 -GSPPPHIRWYKNGNSLPPEDTRINVSSSGSLQI 194
+ W +G + ++ S S
Sbjct: 255 LMDSRNEVWWTIDGKKPDDITIDVTINESISHSR 288
Score = 92.2 bits (228), Expect = 1e-21
Identities = 32/241 (13%), Positives = 62/241 (25%), Gaps = 51/241 (21%)
Query: 51 NGIASFQCVAEGSPLPSVFW--TQEGSQVLMFPGNAYGHLHVTQE-GTLRIQGVQKEDAG 107
F S ++ W T++ + +++E L + D G
Sbjct: 33 EHFLKFNYSTAHSAGLTLIWYWTRQDRDLEEPINFRLPENRISKEKDVLWFRPTLLNDTG 92
Query: 108 FFVCSALSVAGSTTVRAFLQVTSVEDTPPPIVQVGPSNQTLPLHSVAFLPC-----QAVG 162
+ C + + V L+V +D+ P ++ + + + C
Sbjct: 93 NYTCMLRNTTYCSKVAFPLEVV-QKDSCFNSPMKLPVHKLYIEYGIQRITCPNVDGYFPS 151
Query: 163 SPPPHIRWYKNGNSLPPEDTRI------------------------------NVSSSGSL 192
S P I WY + + I + +L
Sbjct: 152 SVKPTITWYMGCYKIQNFNNVIPEGMNLSFLIALISNNGNYTCVVTYPENGRTFHLTRTL 211
Query: 193 QIDVLRDDFRAEP---------KDTRVASGETALLEC---GPPKGQPEPTLHWKKNGQFI 240
+ V+ A P GE L+ C + W +G+
Sbjct: 212 TVKVVGSPKNAVPPVIHSPNDHVVYEKEPGEELLIPCTVYFSFLMDSRNEVWWTIDGKKP 271
Query: 241 D 241
D
Sbjct: 272 D 272
Score = 79.9 bits (196), Expect = 3e-17
Identities = 28/152 (18%), Positives = 41/152 (26%), Gaps = 24/152 (15%)
Query: 1 MITEVKKSDEGKYQCYVQ---NMVGERETKPALLTVHAPPSFVVRPQ--------DQKVG 49
S+ G Y C V N T+ + V P V P +
Sbjct: 180 SFLIALISNNGNYTCVVTYPENGRTFHLTRTLTVKVVGSPKNAVPPVIHSPNDHVVYEKE 239
Query: 50 LNGIASFQCVA----EGSPLPSVFWTQEGSQVLMFPGNAY--------GHLHVTQEGTLR 97
C V+WT +G + + T+ L
Sbjct: 240 PGEELLIPCTVYFSFLMDSRNEVWWTIDGKKPDDITIDVTINESISHSRTEDETRTQILS 299
Query: 98 IQGVQKEDAGF-FVCSALSVAGSTTVRAFLQV 128
I+ V ED +VC A S G A ++
Sbjct: 300 IKKVTSEDLKRSYVCHARSAKGEVAKAAKVKQ 331
Score = 47.2 bits (111), Expect = 3e-06
Identities = 16/142 (11%), Positives = 29/142 (20%), Gaps = 44/142 (30%)
Query: 152 SVAFLPCQAVGSPPPHIRWYKNGNSLPPE--------DTRINV----------------- 186
S + WY E + RI+
Sbjct: 34 HFLKFNYSTAHSAGLTLIWYWTRQDRDLEEPINFRLPENRISKEKDVLWFRPTLLNDTGN 93
Query: 187 ----------SSSGSLQIDVLRDD-----FRAEPKDTRVASGETALLEC----GPPKGQP 227
S + ++V++ D P + C G
Sbjct: 94 YTCMLRNTTYCSKVAFPLEVVQKDSCFNSPMKLPVHKLYIEYGIQRITCPNVDGYFPSSV 153
Query: 228 EPTLHWKKNGQFIDLESSKRVS 249
+PT+ W I ++
Sbjct: 154 KPTITWYMGCYKIQNFNNVIPE 175
Score = 39.1 bits (90), Expect = 0.001
Identities = 11/43 (25%), Positives = 17/43 (39%), Gaps = 3/43 (6%)
Query: 1 MITEVKKSDEG-KYQCYVQNMVGERETKPALLTVHAP-PSFVV 41
I +V D Y C+ ++ GE A + P P + V
Sbjct: 299 SIKKVTSEDLKRSYVCHARSAKGEVAKA-AKVKQKVPAPRYTV 340
Score = 34.1 bits (77), Expect = 0.042
Identities = 13/56 (23%), Positives = 19/56 (33%), Gaps = 11/56 (19%)
Query: 199 DDFRAEP-KDTRVASGETALLECG----------PPKGQPEPTLHWKKNGQFIDLE 243
DD+ + + +V E A ++C TL W Q DLE
Sbjct: 7 DDWGLDTMRQIQVFEDEPARIKCPLFEHFLKFNYSTAHSAGLTLIWYWTRQDRDLE 62
>1z7z_I Intercellular adhesion molecule-1; ICAM-1,kilifi,CD54,human
coxsackievirus A21, cryo-electron
microscopy,virus-receptor complex, icosahedral virus;
HET: NAG NDG; 8.00A {Homo sapiens} SCOP: b.1.1.3 b.1.1.3
b.1.1.4 b.1.1.4 b.1.1.4
Length = 450
Score = 108 bits (269), Expect = 6e-27
Identities = 40/193 (20%), Positives = 68/193 (35%), Gaps = 18/193 (9%)
Query: 2 ITEVKKSDEGKYQ--CYVQNMVGERETKPALLTVHAPPSFVVRPQDQKVGLNGIASFQCV 59
V DEG + C V +ET +T+++ P+ V +V + +C
Sbjct: 248 SVSVTAEDEGTQRLTCAVILGNQSQETL-QTVTIYSFPAPNVILTKPEVSEGTEVTVKCE 306
Query: 60 AEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSA-LSVAG 118
A ++ + L ++ +++ F CSA L VAG
Sbjct: 307 AHPRAKVTLNGVPAQP--------------LGPRAQLLLKATPEDNGRSFSCSATLEVAG 352
Query: 119 STTVRAFLQVTSVEDTPPPIVQVGPSNQTLPLHSVAFLPCQAVGSPPPHIRWYKNGNSLP 178
+ + V P + P N T P +S CQA G+P P ++ K+G
Sbjct: 353 QLIHKNQTRELRVLYGPRLDERDCPGNWTWPENSQQTPMCQAWGNPLPELKCLKDGTFPL 412
Query: 179 PEDTRINVSSSGS 191
P + V+
Sbjct: 413 PIGESVTVTRDLE 425
Score = 90.3 bits (223), Expect = 1e-20
Identities = 35/274 (12%), Positives = 74/274 (27%), Gaps = 41/274 (14%)
Query: 1 MITEVKKSDEGKYQCYVQNMVGERE-------TKPALLTVHAPPSFVVRPQDQKVGLNG- 52
+ + + C + + + + P L P+ + +V
Sbjct: 145 TVLVRRDHHGANFSCRTELDLRPQGLELFENTSAPYQLQTFVLPATPPQLVSPRVLEVDT 204
Query: 53 IASFQCVAEGS-PLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVC 111
+ C +G P+ + P YG+ + + ++ + + E C
Sbjct: 205 QGTVVCSLDGLFPVSEAQVHLALGDQRLNPTVTYGNDSFSAKASVSVT-AEDEGTQRLTC 263
Query: 112 SALSVAGSTTVRAFLQVTSVEDTPPPIVQVGPSNQTLPLHSVAFLPCQAVGSPPPHIRWY 171
+ + S + + S P P V + + + + C+A +
Sbjct: 264 AVILGNQSQETLQTVTIYS---FPAPNVI--LTKPEVSEGTEVTVKCEAHPRAKVTLNGV 318
Query: 172 KNGNSLPPEDTRINVSS----------------------SGSLQIDVL---RDDFRAEPK 206
P + + + + ++ VL R D R P
Sbjct: 319 PAQPLGPRAQLLLKATPEDNGRSFSCSATLEVAGQLIHKNQTRELRVLYGPRLDERDCPG 378
Query: 207 DTRVASGETALLECGPPKGQPEPTLHWKKNGQFI 240
+ C G P P L K+G F
Sbjct: 379 NWTWPENSQQTPMC-QAWGNPLPELKCLKDGTFP 411
Score = 85.3 bits (210), Expect = 6e-19
Identities = 34/278 (12%), Positives = 65/278 (23%), Gaps = 48/278 (17%)
Query: 8 SDEGKYQCYVQNMVGERETKPALLTVHAPPSFVVRPQDQKVGLNGIASFQCVAEGS---P 64
++ + CY G+ K L P + P + + +C EG
Sbjct: 58 QEDSQPMCYSNCPDGQSTAKTFLTVYWTPERVELAPLPSWQPVGKNLTLRCQVEGGAPRA 117
Query: 65 LPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRA 124
+V + ++ + E T + + F C +
Sbjct: 118 NLTVVLLRGEKEL-----KREPAVGEPAEVTTTVLVRRDHHGANFSCRTELDLRPQGLEL 172
Query: 125 FLQVTSVEDT----PPPIVQVGPSNQTLPLHSVAFLPCQAVGSPP---PHIRWYKNGNSL 177
F ++ P S + L + + + C G P + L
Sbjct: 173 FENTSAPYQLQTFVLPATPPQLVSPRVLEVDTQGTVVCSLDGLFPVSEAQVHLALGDQRL 232
Query: 178 PPEDTRINVSSSGSLQIDVLRDD------------------------------FRAEPKD 207
P T N S S + V +D
Sbjct: 233 NPTVTYGNDSFSAKASVSVTAEDEGTQRLTCAVILGNQSQETLQTVTIYSFPAPNVILTK 292
Query: 208 TRVASGETALLECGPPKGQPEPTLHWKKNGQFIDLESS 245
V+ G ++C + P + +
Sbjct: 293 PEVSEGTEVTVKC---EAHPRAKVTLNGVPAQPLGPRA 327
Score = 76.4 bits (187), Expect = 7e-16
Identities = 24/132 (18%), Positives = 41/132 (31%), Gaps = 20/132 (15%)
Query: 2 ITEVKKSDEGKYQCYVQNMVGERETKPAL---LTVHAPPSFVVR--PQDQKVGLNGIASF 56
+ + + + C V + L V P R P + N +
Sbjct: 331 LKATPEDNGRSFSCSATLEVAGQLIHKNQTRELRVLYGPRLDERDCPGNWTWPENSQQTP 390
Query: 57 QCVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSV 116
C A G+PLP + ++G+ L V ++ G ++C A S
Sbjct: 391 MCQAWGNPLPELKCLKDGTFPLP---------------IGESVTVTRDLEGTYLCRARST 435
Query: 117 AGSTTVRAFLQV 128
G T + V
Sbjct: 436 QGEVTREVTVNV 447
Score = 71.1 bits (173), Expect = 4e-14
Identities = 35/249 (14%), Positives = 61/249 (24%), Gaps = 59/249 (23%)
Query: 41 VRPQDQKVGLNGIASFQCVAEGSPLPSVFW-TQEGSQVLMFPGNAYGHLHVTQEGTLRIQ 99
V P + G C + T + L+ PGN +
Sbjct: 4 VSPSKVILPRGGSVLVTCSTSCDQPMLLGIETPLPKKELLLPGN----------NRKVYE 53
Query: 100 GVQKEDAGFFVCSALSVAGSTTVRAFLQVTSVEDTPPPIVQVGPSNQTLPLHSVAFLPCQ 159
++ +C + G +T + FL V P V++ P P+ L CQ
Sbjct: 54 LSNVQEDSQPMCYSNCPDGQSTAKTFLTV----YWTPERVELAPLPSWQPVGKNLTLRCQ 109
Query: 160 AVGSPPPH---IRWYKNGNSLPPEDTRINVSSSGSLQIDVLRDDFRAE------------ 204
G P + + L E + + + + V RD A
Sbjct: 110 VEGGAPRANLTVVLLRGEKELKRE-PAVGEPAEVTTTVLVRRDHHGANFSCRTELDLRPQ 168
Query: 205 --------------------------PKDTRVASGETALLECGPPKGQP--EPTLHWKKN 236
+ + C P E +H
Sbjct: 169 GLELFENTSAPYQLQTFVLPATPPQLVSPRVLEVDTQGTVVCSLDGLFPVSEAQVHLALG 228
Query: 237 GQFIDLESS 245
Q ++ +
Sbjct: 229 DQRLNPTVT 237
Score = 51.4 bits (122), Expect = 1e-07
Identities = 18/138 (13%), Positives = 31/138 (22%), Gaps = 27/138 (19%)
Query: 139 VQVGPSNQTLPLHSVAFLPCQAVGSPPPHIRWYK--NGNSLPPEDTRINV---------- 186
V PS LP + C P + L V
Sbjct: 2 TSVSPSKVILPRGGSVLVTCSTSCDQPMLLGIETPLPKKELLLPGNNRKVYELSNVQEDS 61
Query: 187 -------------SSSGSLQIDVLRDDFRAEPKDTRVASGETALLECGPPKGQPEP--TL 231
++ L + + P + G+ L C G P T+
Sbjct: 62 QPMCYSNCPDGQSTAKTFLTVYWTPERVELAPLPSWQPVGKNLTLRCQVEGGAPRANLTV 121
Query: 232 HWKKNGQFIDLESSKRVS 249
+ + + E +
Sbjct: 122 VLLRGEKELKREPAVGEP 139
>3jz7_A MCAR, CAR, coxsackievirus and adenovirus receptor homolog; cell
adhesion molecule, immunoglobuline superfamily,
alternative splicing, cell adhesion; 2.19A {Mus
musculus} PDB: 3mj7_B* 2npl_X
Length = 214
Score = 102 bits (256), Expect = 1e-26
Identities = 31/131 (23%), Positives = 45/131 (34%), Gaps = 6/131 (4%)
Query: 1 MITEVKKSDEGKYQCYVQNMVGERETKPALLTVHAPPSFVVRPQDQKVGLNGIASFQC-V 59
+T ++ SD G YQC V+ G K LLTV PS D + +C
Sbjct: 87 NVTNLQLSDIGTYQCKVKKAPGVANKK-FLLTVLVKPSGTRCFVDGSEEIGNDFKLKCEP 145
Query: 60 AEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGS 119
EGS W + M L + ++ E +G + C+ + GS
Sbjct: 146 KEGSLPLQFEWQKLSDSQTMPTP----WLAEMTSPVISVKNASSEYSGTYSCTVQNRVGS 201
Query: 120 TTVRAFLQVTS 130
L V
Sbjct: 202 DQCMLRLDVVP 212
Score = 87.4 bits (216), Expect = 8e-21
Identities = 25/198 (12%), Positives = 54/198 (27%), Gaps = 39/198 (19%)
Query: 31 LTVHAPPSFVVRPQDQKVGLNGIASFQCVAEGSPLP----SVFWTQEGSQVLMFPGNAY- 85
L++ P + + + + L C SP + W S +
Sbjct: 1 LSITTPEQRIEKAKGETAYLP------CKFTLSPEDQGPLDIEWLISPSDNQIVDQVIIL 54
Query: 86 ---------------------GHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRA 124
+ + + ++ + +Q D G + C G +
Sbjct: 55 YSGDKIYDNYYPDLKGRVHFTSNDVKSGDASINVTNLQLSDIGTYQCKVKKAPGVANKKF 114
Query: 125 FLQVTSVEDTPPPIVQVGPSNQTLPLHSVAFLPCQAV-GSPPPHIRWYKNGNSLPPEDTR 183
L V P + + + + L C+ GS P W K +S
Sbjct: 115 LLTVLV-----KPSGTRCFVDGSEEIGNDFKLKCEPKEGSLPLQFEWQKLSDSQTMPTPW 169
Query: 184 INVSSSGSLQI-DVLRDD 200
+ +S + + + +
Sbjct: 170 LAEMTSPVISVKNASSEY 187
Score = 50.5 bits (120), Expect = 1e-07
Identities = 22/166 (13%), Positives = 37/166 (22%), Gaps = 59/166 (35%)
Query: 139 VQVGPSNQTLPLHSVAFLPCQAVGSP----PPHIRWYKNGNSLPPEDTRINVSSSG---- 190
+ A+LPC+ SP P I W + + D I + S
Sbjct: 3 ITTPEQRIEKAKGETAYLPCKFTLSPEDQGPLDIEWLISPSDNQIVDQVIILYSGDKIYD 62
Query: 191 ----------------------SLQI-DVLRDD--------------------------- 200
S+ + ++ D
Sbjct: 63 NYYPDLKGRVHFTSNDVKSGDASINVTNLQLSDIGTYQCKVKKAPGVANKKFLLTVLVKP 122
Query: 201 -FRAEPKDTRVASGETALLECGPPKGQPEPTLHWKKNGQFIDLESS 245
D G L+C P +G W+K + +
Sbjct: 123 SGTRCFVDGSEEIGNDFKLKCEPKEGSLPLQFEWQKLSDSQTMPTP 168
Score = 35.4 bits (81), Expect = 0.012
Identities = 13/57 (22%), Positives = 21/57 (36%), Gaps = 3/57 (5%)
Query: 205 PKDTRVASGETALLEC---GPPKGQPEPTLHWKKNGQFIDLESSKRVSILGDPWFDS 258
+ A GETA L C P+ Q + W + + + GD +D+
Sbjct: 7 EQRIEKAKGETAYLPCKFTLSPEDQGPLDIEWLISPSDNQIVDQVIILYSGDKIYDN 63
>2o26_X MAST/stem cell growth factor receptor; stem cell factor, receptor
tyrosine kinase, class III, recep ligand complex,
cytokine, 4-helix bundle; HET: NAG FUL MAN NDG; 2.50A
{Mus musculus}
Length = 290
Score = 103 bits (257), Expect = 5e-26
Identities = 26/212 (12%), Positives = 50/212 (23%), Gaps = 20/212 (9%)
Query: 1 MITEVKKSDEGKYQCYVQNMVGERETKPALLTVHAPPSFVVRPQDQKVGLNGIASFQCVA 60
+ + + + G Y C N + + V P + + A +C
Sbjct: 60 IQEKAEATRTGTYTCSNSNGLTSSIY----VFVRDPAKLFLVGLPLFGKEDSDALVRCPL 115
Query: 61 EGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQK-EDAGFFVCSALSVAGS 119
+ + + L + + I+ V++ C+A
Sbjct: 116 TDPQVSQYSLIECDGKSLPTDLT----FVPNPKAGITIKNVKRAYHRLCVRCAAQRDGTW 171
Query: 120 TTVRAFLQVTSVEDTPPPIVQVGPSNQTLPLHSVAFLPCQAVGSPPP-HIRWYKNGNSLP 178
F P+V V ++ L + C + W K
Sbjct: 172 LHSDKFTLKVREAIKAIPVVSVPETSHLLKKGDTFTVVCTIKDVSTSVNSMWLKMNPQPQ 231
Query: 179 P---------EDTRINVSSSGSLQI-DVLRDD 200
N +L I DD
Sbjct: 232 HIAQVKHNSWHRGDFNYERQETLTISSARVDD 263
Score = 88.6 bits (219), Expect = 9e-21
Identities = 30/262 (11%), Positives = 58/262 (22%), Gaps = 56/262 (21%)
Query: 35 APPSFVVRPQDQKVGLNGIASFQCVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEG 94
+PPS + V S C+ V WT + + ++
Sbjct: 11 SPPSIHPAQSELIVEAGDTLSLTCIDPDF----VRWTFKTYF---------NEMVENKKN 57
Query: 95 TLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVTSVEDTPPPIVQVGPSNQTLPLHSVA 154
+ + G + CS + S+ ++ V P + + S A
Sbjct: 58 EWIQEKAEATRTGTYTCSNSNGLTSSI---YVFVR-----DPAKLFLVGLPLFGKEDSDA 109
Query: 155 FLPCQAVGSPPPHIRWYKNGNSLPPEDTRINVSSSGSLQI-DVLRDD------------- 200
+ C + P D + + I +V R
Sbjct: 110 LVRCPLTDPQVSQYSLIECDGKSLPTDLTFVPNPKAGITIKNVKRAYHRLCVRCAAQRDG 169
Query: 201 ---------------------FRAEPKDTRVASGETALLECGPPKGQPEPTLHWKKNGQF 239
+ G+T + C W K
Sbjct: 170 TWLHSDKFTLKVREAIKAIPVVSVPETSHLLKKGDTFTVVCTIKDVSTSVNSMWLKMNPQ 229
Query: 240 IDLESSKRVSILGDPWFDSRRS 261
+ + + F+ R
Sbjct: 230 PQHIAQVKHNSWHRGDFNYERQ 251
Score = 77.8 bits (191), Expect = 8e-17
Identities = 24/137 (17%), Positives = 42/137 (30%), Gaps = 10/137 (7%)
Query: 2 ITEVKKSDEGKYQCYVQNMVGERETKPALLTV----HAPPSFVVRPQDQKVGLNGIASFQ 57
+ +C Q + L V A P V + +
Sbjct: 150 KNVKRAYHRLCVRCAAQRDGTWLHSDKFTLKVREAIKAIPVVSVPETSHLLKKGDTFTVV 209
Query: 58 CVAEGSPLP-SVFWTQEGSQVLMFPGNAY-----GHLHVTQEGTLRIQGVQKEDAGFFVC 111
C + + W + Q + G + ++ TL I + +D+G F+C
Sbjct: 210 CTIKDVSTSVNSMWLKMNPQPQHIAQVKHNSWHRGDFNYERQETLTISSARVDDSGVFMC 269
Query: 112 SALSVAGSTTVRAFLQV 128
A + GS V L+V
Sbjct: 270 YANNTFGSANVTTTLKV 286
Score = 41.3 bits (96), Expect = 2e-04
Identities = 15/130 (11%), Positives = 26/130 (20%), Gaps = 26/130 (20%)
Query: 129 TSVEDTPPPIVQVGPSNQTLPLHSVAFLPCQAVGSPPPHIRWYKNGNSLPPEDTRINV-- 186
S + PP + S + L C +RW + + N
Sbjct: 5 ASPGEPSPPSIHPAQSELIVEAGDTLSLTCIDPDF----VRWTFKTYFNEMVENKKNEWI 60
Query: 187 ------------------SSSGSLQIDVL-RDDFRAEPKDTRVASGETALLECGPPKGQP 227
+ S+ + V AL+ C P
Sbjct: 61 QEKAEATRTGTYTCSNSNGLTSSIYVFVRDPAKLFLVGLPLFGKEDSDALVRC-PLTDPQ 119
Query: 228 EPTLHWKKNG 237
+
Sbjct: 120 VSQYSLIECD 129
>2edj_A Roundabout homolog 2; KIAA1568 protein, beta sandwich, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 100
Score = 96.7 bits (241), Expect = 1e-25
Identities = 30/97 (30%), Positives = 48/97 (49%), Gaps = 4/97 (4%)
Query: 33 VHAPPSFVVRPQDQKVGLNGIASFQCVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQ 92
PP + P +Q + ++G A +C A G PLP + W +EG + +
Sbjct: 5 SSGPPIILQGPANQTLAVDGTALLKCKATGDPLPVISWLKEGFTFPG----RDPRATIQE 60
Query: 93 EGTLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVT 129
+GTL+I+ ++ D G + C A S +G T+ A L VT
Sbjct: 61 QGTLQIKNLRISDTGTYTCVATSSSGETSWSAVLDVT 97
Score = 82.4 bits (204), Expect = 3e-20
Identities = 28/69 (40%), Positives = 38/69 (55%), Gaps = 1/69 (1%)
Query: 133 DTPPPIVQVGPSNQTLPLHSVAFLPCQAVGSPPPHIRWYKNGNSLPPEDTRINVSSSGSL 192
+ PPI+ GP+NQTL + A L C+A G P P I W K G + P D R + G+L
Sbjct: 5 SSGPPIILQGPANQTLAVDGTALLKCKATGDPLPVISWLKEGFTFPGRDPRATIQEQGTL 64
Query: 193 QI-DVLRDD 200
QI ++ D
Sbjct: 65 QIKNLRISD 73
Score = 47.8 bits (114), Expect = 1e-07
Identities = 15/53 (28%), Positives = 20/53 (37%), Gaps = 2/53 (3%)
Query: 201 FRAEPKDTRVASGETALLECGPPKGQPEPTLHWKKNGQFIDLESSKRVSILGD 253
P + +A TALL+C G P P + W K G R +I
Sbjct: 11 ILQGPANQTLAVDGTALLKC-KATGDPLPVISWLKEGFTFP-GRDPRATIQEQ 61
Score = 37.8 bits (88), Expect = 4e-04
Identities = 11/32 (34%), Positives = 15/32 (46%), Gaps = 1/32 (3%)
Query: 2 ITEVKKSDEGKYQCYVQNMVGERETKPALLTV 33
I ++ SD G Y C + GE A+L V
Sbjct: 66 IKNLRISDTGTYTCVATSSSGETSWS-AVLDV 96
>2oz4_A Intercellular adhesion molecule 1; IGSF domain, structural
plasticity, cell-surface dimerizatio adhesion; HET: NAG
FUC; 2.70A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 b.1.1.4
PDB: 1p53_A*
Length = 265
Score = 101 bits (253), Expect = 1e-25
Identities = 36/190 (18%), Positives = 66/190 (34%), Gaps = 16/190 (8%)
Query: 1 MITEVKKSDEGKYQCYVQNMVGERETKPALLTVHAPPSFVVRPQDQKVGLNGIASFQCVA 60
+ + + C V +ET +T+++ P+ V +V + +C A
Sbjct: 64 VSVTAEDEGTQRLTCAVILGNQSQETL-QTVTIYSFPAPNVILTKPEVSEGTEVTVKCEA 122
Query: 61 EGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSA-LSVAGS 119
++ + L ++ +++ F CSA L VAG
Sbjct: 123 HPRAKVTLNGVPAQP--------------LGPRAQLLLKATPEDNGRSFSCSATLEVAGQ 168
Query: 120 TTVRAFLQVTSVEDTPPPIVQVGPSNQTLPLHSVAFLPCQAVGSPPPHIRWYKNGNSLPP 179
+ + V P + P N T P +S CQA G+P P ++ K+G P
Sbjct: 169 LIHKNQTRELRVLYGPRLDERDCPGNWTWPENSQQTPMCQAWGNPLPELKCLKDGTFPLP 228
Query: 180 EDTRINVSSS 189
+ V+
Sbjct: 229 IGESVTVTRD 238
Score = 80.9 bits (199), Expect = 4e-18
Identities = 24/133 (18%), Positives = 44/133 (33%), Gaps = 20/133 (15%)
Query: 1 MITEVKKSDEGKYQCYVQNMVGER---ETKPALLTVHAPPSFVVR--PQDQKVGLNGIAS 55
++ + + + C V + + + L V P R P + N +
Sbjct: 145 LLKATPEDNGRSFSCSATLEVAGQLIHKNQTRELRVLYGPRLDERDCPGNWTWPENSQQT 204
Query: 56 FQCVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALS 115
C A G+PLP + ++G+ L V ++ G ++C A S
Sbjct: 205 PMCQAWGNPLPELKCLKDGTFPLP---------------IGESVTVTRDLEGTYLCRARS 249
Query: 116 VAGSTTVRAFLQV 128
G T + V
Sbjct: 250 TQGEVTREVTVNV 262
Score = 72.8 bits (178), Expect = 4e-15
Identities = 35/232 (15%), Positives = 66/232 (28%), Gaps = 35/232 (15%)
Query: 35 APPSFVVRPQDQKVGLNGIASFQCVAEGS-PLPSVFWTQEGSQVLMFPGNAYGHLHVTQE 93
A P +V P+ +V + C +G P+ + P YG+ + +
Sbjct: 4 ATPPQLVSPRVLEVDTQ--GTVVCSLDGLFPVSEAQVHLALGDQRLNPTVTYGNDSFSAK 61
Query: 94 GTLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVTSVEDTPPPIVQVGPSNQTLPLHSV 153
++ + + E C+ + S + + S P P V + + +
Sbjct: 62 ASVSVT-AEDEGTQRLTCAVILGNQSQETLQTVTIYS---FPAPNVI--LTKPEVSEGTE 115
Query: 154 AFLPCQAVGSPPPHIRWYKNGNSLPPEDTRINV----------------------SSSGS 191
+ C+A + P + + +
Sbjct: 116 VTVKCEAHPRAKVTLNGVPAQPLGPRAQLLLKATPEDNGRSFSCSATLEVAGQLIHKNQT 175
Query: 192 LQIDVL---RDDFRAEPKDTRVASGETALLECGPPKGQPEPTLHWKKNGQFI 240
++ VL R D R P + C G P P L K+G F
Sbjct: 176 RELRVLYGPRLDERDCPGNWTWPENSQQTPMCQA-WGNPLPELKCLKDGTFP 226
>2eo9_A Roundabout homolog 1; beta-sandwich, IG-fold, H-ROBO-1, deleted in
U twenty twenty, neurogenesis, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 118
Score = 97.1 bits (242), Expect = 1e-25
Identities = 30/114 (26%), Positives = 54/114 (47%), Gaps = 7/114 (6%)
Query: 35 APPSFVVRPQDQKVGLNGIASFQCVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEG 94
PP P +Q V ++G CVA GSP+P++ W ++G V + + G
Sbjct: 7 GPPVIRQGPVNQTVAVDGTFVLSCVATGSPVPTILWRKDGVLVSTQD----SRIKQLENG 62
Query: 95 TLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVTSVEDTPPPIVQVGPSNQTL 148
L+I+ + D G + C A + +G T A+++ V++ P+ P++ L
Sbjct: 63 VLQIRYAKLGDTGRYTCIASTPSGEATWSAYIE---VQEFGVPVQPPRPTDPNL 113
Score = 83.3 bits (206), Expect = 3e-20
Identities = 26/69 (37%), Positives = 37/69 (53%), Gaps = 1/69 (1%)
Query: 133 DTPPPIVQVGPSNQTLPLHSVAFLPCQAVGSPPPHIRWYKNGNSLPPEDTRINVSSSGSL 192
+ PP+++ GP NQT+ + L C A GSP P I W K+G + +D+RI +G L
Sbjct: 5 SSGPPVIRQGPVNQTVAVDGTFVLSCVATGSPVPTILWRKDGVLVSTQDSRIKQLENGVL 64
Query: 193 QI-DVLRDD 200
QI D
Sbjct: 65 QIRYAKLGD 73
Score = 50.5 bits (121), Expect = 2e-08
Identities = 17/53 (32%), Positives = 26/53 (49%), Gaps = 2/53 (3%)
Query: 201 FRAEPKDTRVASGETALLECGPPKGQPEPTLHWKKNGQFIDLESSKRVSILGD 253
R P + VA T +L C G P PT+ W+K+G + + S R+ L +
Sbjct: 11 IRQGPVNQTVAVDGTFVLSC-VATGSPVPTILWRKDGVLVSTQDS-RIKQLEN 61
Score = 49.8 bits (119), Expect = 5e-08
Identities = 12/48 (25%), Positives = 15/48 (31%), Gaps = 1/48 (2%)
Query: 1 MITEVKKSDEGKYQCYVQNMVGERETKPALLTVHAPPSFVVRPQDQKV 48
I K D G+Y C GE A + V V P+
Sbjct: 65 QIRYAKLGDTGRYTCIASTPSGEATW-SAYIEVQEFGVPVQPPRPTDP 111
>1fhg_A Telokin; immunoglobulin fold, beta barrel, contractIle protein;
2.00A {Meleagris gallopavo} SCOP: b.1.1.4 PDB: 1tlk_A
Length = 154
Score = 97.2 bits (242), Expect = 3e-25
Identities = 32/143 (22%), Positives = 49/143 (34%), Gaps = 12/143 (8%)
Query: 2 ITEVKKSDEGKYQCYVQNMVGERE---TKPALLTVHAPPSFVVRPQDQKVGLNGIASFQC 58
++ K S N V + + A H P F D +V A F C
Sbjct: 4 MSGRKASGSSPTSPINANKVENEDAFLEEVAEEKPHVKPYFTKTILDMEVVEGSAARFDC 63
Query: 59 VAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEG----TLRIQGVQKEDAGFFVCSAL 114
EG P P V W ++ + V H + + +L I V +D + C A+
Sbjct: 64 KVEGYPDPEVMWFKDDNPV-----KESRHFQIDYDEEGNCSLTISEVCGDDDAKYTCKAV 118
Query: 115 SVAGSTTVRAFLQVTSVEDTPPP 137
+ G T A L V ++
Sbjct: 119 NSLGEATCTAELLVETMGKEGEG 141
Score = 62.9 bits (153), Expect = 2e-12
Identities = 26/109 (23%), Positives = 44/109 (40%), Gaps = 6/109 (5%)
Query: 98 IQGV-QKEDAGFFVCSALSVAGSTTVRAFLQVTSVEDTP-PPIVQVGPSNQTLPLHSVAF 155
I G+ ++ +G S ++ AFL+ + E P + + S A
Sbjct: 1 ISGMSGRKASGSSPTSPINANKVENEDAFLEEVAEEKPHVKPYFTKTILDMEVVEGSAAR 60
Query: 156 LPCQAVGSPPPHIRWYKNGNSLPP-EDTRINVSSSG--SLQI-DVLRDD 200
C+ G P P + W+K+ N + +I+ G SL I +V DD
Sbjct: 61 FDCKVEGYPDPEVMWFKDDNPVKESRHFQIDYDEEGNCSLTISEVCGDD 109
Score = 46.0 bits (109), Expect = 2e-06
Identities = 14/54 (25%), Positives = 22/54 (40%), Gaps = 3/54 (5%)
Query: 201 FRAEPKDTRVASGETALLECGPPKGQPEPTLHWKKNGQFIDLESSKRVSILGDP 254
F D V G A +C +G P+P + W K+ ++ S+ I D
Sbjct: 44 FTKTILDMEVVEGSAARFDC-KVEGYPDPEVMWFKDDN--PVKESRHFQIDYDE 94
>1wio_A CD4, T-cell surface glycoprotein CD4; immunoglobulin fold,
transmembrane, MHC lipoprotein, polymorphism; 3.90A
{Homo sapiens} SCOP: b.1.1.1 b.1.1.1 b.1.1.3 b.1.1.3
PDB: 1wip_A 1wiq_A 3t0e_E
Length = 363
Score = 101 bits (253), Expect = 5e-25
Identities = 35/292 (11%), Positives = 77/292 (26%), Gaps = 69/292 (23%)
Query: 1 MITEVKKSDEGKYQCYVQNMVGERETKPALLTVHAPPSFVVRPQDQKVGLNGIASFQCVA 60
+I +K D Y C V++ E + + A + + +
Sbjct: 70 IIKNLKIEDSDTYICEVEDQKEEVQLLV--FGLTANSDTHLLQGQS-------LTLTLES 120
Query: 61 EGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGST 120
PSV + + TL + ++ +D+G + C+ L
Sbjct: 121 PPGSSPSVQCRSPRGKN------------IQGGKTLSVSQLELQDSGTWTCTVLQNQKKV 168
Query: 121 TVRAFLQVTSVEDTPPPIVQVGPSNQTLPLHSVAFLPCQAVGSPPPHIRWYKNGNSLPPE 180
+ + V + + + + + + + W S
Sbjct: 169 EFKIDIVVLAF--QKASSIVYKKEGEQVEFSFPLAFTVEKLT-GSGELWWQAERASSSKS 225
Query: 181 ------------------DTRINVSSSGSLQIDVLRDDFR----------AEPKDTRV-- 210
D ++ + L + + + + E K ++
Sbjct: 226 WITFDLKNKEVSVKRVTQDPKLQMGKKLPLHLTLPQALPQYAGSGNLTLALEAKTGKLHQ 285
Query: 211 --------ASGETALLEC---GPPKGQPEPTLHWKKNGQFIDLESSKRVSIL 251
A+ L C GP P+ L K + + + SKR +
Sbjct: 286 EVNLVVMRATQLQKNLTCEVWGPTS--PKLMLSLKLENK--EAKVSKREKAV 333
Score = 81.0 bits (199), Expect = 1e-17
Identities = 26/222 (11%), Positives = 51/222 (22%), Gaps = 50/222 (22%)
Query: 54 ASFQCVAEGSPLPSVFWTQEGSQVLMFPGNAYGH---------------LHVTQEGTLRI 98
C A W ++ ++ L L I
Sbjct: 12 VELTCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQGNFPLII 71
Query: 99 QGVQKEDAGFFVCSALSVAGSTTVRAFLQVTSVEDTPPPIVQVGPSNQTLPLHSVAFLPC 158
+ ++ ED+ ++C L V + + G S L
Sbjct: 72 KNLKIEDSDTYICEVEDQKEEVQ----LLVFGLTANSDTHLLQGQS---------LTLTL 118
Query: 159 QAVGSPPPHIRWYKNGNSLPPED-----TRINVSSSG-------------SLQIDVLRDD 200
++ P ++ +++ + SG +ID++
Sbjct: 119 ESPPGSSPSVQCRSPRGKNIQGGKTLSVSQLELQDSGTWTCTVLQNQKKVEFKIDIVVLA 178
Query: 201 FRAEPKDTRVASGETA----LLECGPPKGQPEPTLHWKKNGQ 238
F+ GE L K L W+
Sbjct: 179 FQKASSIVYKKEGEQVEFSFPLAFTVEKLTGSGELWWQAERA 220
Score = 47.9 bits (113), Expect = 2e-06
Identities = 17/127 (13%), Positives = 35/127 (27%), Gaps = 26/127 (20%)
Query: 2 ITEVKKSDEGKYQCYVQNMVGERETKPALLTVHAPPSFVVRPQDQKVGLNGIASFQCVAE 61
+ + G ++ G+ + L V+R + L C
Sbjct: 261 QALPQYAGSGNLTLALEAKTGKLHQEVNL--------VVMRATQLQKNL------TCEVW 306
Query: 62 GSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTT 121
G P + + L + V +AG + C S +G
Sbjct: 307 GPTSPKLMLS------LKLENK-----EAKVSKREKAVWVLNPEAGMWQCLL-SDSGQVL 354
Query: 122 VRAFLQV 128
+ + ++V
Sbjct: 355 LESNIKV 361
Score = 40.9 bits (95), Expect = 3e-04
Identities = 16/73 (21%), Positives = 24/73 (32%), Gaps = 6/73 (8%)
Query: 213 GETALLECGPPKGQPEPTLHWKKNGQFIDLESSKRVSILGDPWFDSRRSRSIFGSVLGAL 272
G+T L C + HWK + Q L + G + R S
Sbjct: 9 GDTVELTCTAS-QKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDR-----ADSRRSLW 62
Query: 273 SDDQWKLIAKNIR 285
+ LI KN++
Sbjct: 63 DQGNFPLIIKNLK 75
Score = 27.5 bits (60), Expect = 6.2
Identities = 6/36 (16%), Positives = 13/36 (36%), Gaps = 4/36 (11%)
Query: 2 ITEVKKSDEGKYQCYVQNMVGERETKPALLTVHAPP 37
V + G +QC + + G+ + + P
Sbjct: 332 AVWVLNPEAGMWQCLLSD-SGQVLLE---SNIKVLP 363
>3rjd_A High affinity immunoglobulin gamma FC receptor I; immune system;
HET: NAG MAN FUC P33; 2.65A {Homo sapiens}
Length = 262
Score = 99.6 bits (248), Expect = 6e-25
Identities = 34/204 (16%), Positives = 65/204 (31%), Gaps = 26/204 (12%)
Query: 2 ITEVKKSDEGKYQCYVQNMVGERETKPALLTVHAPPSFVVRPQDQKVGLNGIASFQC-VA 60
IT +D G+Y+C + P L +H +++ + + +C
Sbjct: 52 ITSASVNDSGEYRCQRGL---SGRSDPIQLEIHRGW-LLLQVSSRVFTEGEPLALRCHAW 107
Query: 61 EGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGST 120
+ + +V + + G F N L I G + CS + T
Sbjct: 108 KDKLVYNVLYYRNGKAFKFFHWN----------SNLTILKTNISHNGTYHCSGMGKHRYT 157
Query: 121 TVRAFLQVTSVEDTPPPIVQVGPSNQTLPLHSVAFLPCQAVGSPPPH---IRWYKNGNSL 177
+ + V E P P++ ++ L + V L C+ + + S
Sbjct: 158 SAGISVTVK--ELFPAPVLNASVTSPLLEGNLVT-LSCETKLLLQRPGLQLYFSFYMGSK 214
Query: 178 PPEDTRINVSSSGSLQI-DVLRDD 200
++S QI R+D
Sbjct: 215 TLR----GRNTSSEYQILTARRED 234
Score = 78.0 bits (192), Expect = 5e-17
Identities = 34/245 (13%), Positives = 64/245 (26%), Gaps = 51/245 (20%)
Query: 37 PSFVVRPQDQKVGLNGIASFQCVAEGSPLP-SVFWTQEGSQVLMFPGNAYGHLHVTQEGT 95
++P V + C P S W G+ T +
Sbjct: 2 AVITLQPPWVSVFQEETVTLHCEVLHLPGSSSTQWFLNGTATQ------------TSTPS 49
Query: 96 LRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVTSVEDTPPPIVQVGPSNQTLPLHSVAF 155
RI D+G + C S ++ L++ ++Q S++
Sbjct: 50 YRITSASVNDSGEYRCQRGLSGRSDPIQ--LEIHR----GWLLLQ--VSSRVFTEGEPLA 101
Query: 156 LPCQAVGSPPPH-IRWYKNGNSLPPED-------TRINVSSSG---------------SL 192
L C A + + +Y+NG + + N+S +G +
Sbjct: 102 LRCHAWKDKLVYNVLYYRNGKAFKFFHWNSNLTILKTNISHNGTYHCSGMGKHRYTSAGI 161
Query: 193 QIDVL---RDDFRAEPKDTRVASGETALLEC---GPPKGQPEPTLHWKKNGQFIDLESSK 246
+ V + + G L C +P L++ L
Sbjct: 162 SVTVKELFPAPVLNASVTSPLLEGNLVTLSCETKLLL-QRPGLQLYFSFYMGSKTLRGRN 220
Query: 247 RVSIL 251
S
Sbjct: 221 TSSEY 225
Score = 69.6 bits (170), Expect = 5e-14
Identities = 21/135 (15%), Positives = 39/135 (28%), Gaps = 17/135 (12%)
Query: 2 ITEVKKSDEGKYQCYVQNMVGERETKPALLTVHAPPS--FVVRPQDQKVGLNGIASFQCV 59
I + S G Y C + +TV + + + + C
Sbjct: 135 ILKTNISHNGTYHCSGMGKHRYT-SAGISVTVKELFPAPVLNASVTSPLLEGNLVTLSCE 193
Query: 60 AEGSPLPSV----FWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALS 115
+ F GS+ L +I ++ED+G + C A +
Sbjct: 194 TKLLLQRPGLQLYFSFYMGSKTLR---------GRNTSSEYQILTARREDSGLYWCEAAT 244
Query: 116 VAGSTTVR-AFLQVT 129
G+ R L++
Sbjct: 245 EDGNVLKRSPELELQ 259
>3kvq_A Vascular endothelial growth factor receptor 2; vegfr2,
angiogenesis, ATP-binding, developmental protein,
differentiation, glycoprotein; 2.70A {Homo sapiens}
Length = 108
Score = 93.9 bits (234), Expect = 2e-24
Identities = 23/106 (21%), Positives = 42/106 (39%), Gaps = 6/106 (5%)
Query: 31 LTVHAPPSFVVRPQDQKVGLNGIASFQCVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHV 90
+ P+ ++Q + C A G+P P + W ++ ++ + +
Sbjct: 5 VLERVAPTITGNLENQTTSIGESIEVSCTASGNPPPQIMWFKDNETLV-----EDSGIVL 59
Query: 91 TQEG-TLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVTSVEDTP 135
L I+ V+KED G + C A SV G V AF + ++
Sbjct: 60 KDGNRNLTIRRVRKEDEGLYTCQACSVLGCAKVEAFFIIEGAQEKT 105
Score = 68.1 bits (167), Expect = 8e-15
Identities = 22/75 (29%), Positives = 36/75 (48%), Gaps = 2/75 (2%)
Query: 127 QVTSVEDTPPPIVQVGPSNQTLPLHSVAFLPCQAVGSPPPHIRWYKNGNSLPPEDTRINV 186
Q+T +E P I NQT + + C A G+PPP I W+K+ +L + +
Sbjct: 2 QLTVLERVAPTITG-NLENQTTSIGESIEVSCTASGNPPPQIMWFKDNETLVEDSGIVLK 60
Query: 187 SSSGSLQI-DVLRDD 200
+ +L I V ++D
Sbjct: 61 DGNRNLTIRRVRKED 75
Score = 47.3 bits (113), Expect = 2e-07
Identities = 9/53 (16%), Positives = 19/53 (35%), Gaps = 3/53 (5%)
Query: 201 FRAEPKDTRVASGETALLECGPPKGQPEPTLHWKKNGQFIDLESSKRVSILGD 253
++ + GE+ + C G P P + W K+ + L + +
Sbjct: 13 ITGNLENQTTSIGESIEVSC-TASGNPPPQIMWFKDNE--TLVEDSGIVLKDG 62
Score = 46.9 bits (112), Expect = 4e-07
Identities = 10/38 (26%), Positives = 17/38 (44%), Gaps = 1/38 (2%)
Query: 2 ITEVKKSDEGKYQCYVQNMVGERETKPALLTVHAPPSF 39
I V+K DEG Y C +++G + + A +
Sbjct: 68 IRRVRKEDEGLYTCQACSVLGCAKVE-AFFIIEGAQEK 104
>3mjg_X Beta-type platelet-derived growth factor receptor; protein-protein
complex, growth factor-receptor complex, TRA hormone
complex; HET: NDG NAG; 2.30A {Homo sapiens}
Length = 289
Score = 99.0 bits (246), Expect = 2e-24
Identities = 26/221 (11%), Positives = 52/221 (23%), Gaps = 33/221 (14%)
Query: 1 MITEVKKSDEGKYQCYVQNMVGERETKPALLTVHAPPS---FVVRPQDQKVGL---NGIA 54
+T + D G+Y C + G + L + P F+ ++
Sbjct: 54 TLTNLTGLDTGEYFCTHNDSRGLETDERKRLYIFVPDPTVGFLPNDAEELFIFLTEITEI 113
Query: 55 SFQCVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSAL 114
+ C P V ++ G + + + + ++C
Sbjct: 114 TIPCRVTD-PQLVVTLHEKK-----------GDVALPVPYDHQRGFSGIFEDRSYICKTT 161
Query: 115 SVAGSTTVRAFLQVTSVEDTPPPIVQVGPSNQTLPLHSVAFLPCQAVGSPPPHIRWYKNG 174
A+ V V + L C +G+ + W
Sbjct: 162 IGDREVDSDAYYVY--RLQVSSINVSVNAVQTVVRQGENITLMCIVIGNEVVNFEWTYPR 219
Query: 175 NSLPP-------EDTRINVSSSGSLQIDVLRDDFRAEPKDT 208
+ L I AE +D+
Sbjct: 220 KESGRLVEPVTDFLLDMPYHIRSILHIP------SAELEDS 254
Score = 90.9 bits (225), Expect = 1e-21
Identities = 19/139 (13%), Positives = 38/139 (27%), Gaps = 7/139 (5%)
Query: 5 VKKSDEGKYQCYVQNMVGERETKPALLTV--HAPPSFVVRPQDQKVGLNGIASFQCVAEG 62
++ Y C E ++ + + + V V + C+ G
Sbjct: 148 SGIFEDRSYICKTTIGDREVDSDAYYVYRLQVSSINVSVNAVQTVVRQGENITLMCIVIG 207
Query: 63 SPLPSVFWTQEGSQVLMFPGNAYGHL---HVTQEGTLRIQGVQKEDAGFFVCSALSVAGS 119
+ + + WT + L L I + ED+G + C+
Sbjct: 208 NEVVNFEWTYPRKESGRLVEPVTDFLLDMPYHIRSILHIPSAELEDSGTYTCNVTESVND 267
Query: 120 TTVRAFLQVTSVEDTPPPI 138
+ +T VE
Sbjct: 268 HQDEKAINITVVE--SGHH 284
Score = 82.1 bits (202), Expect = 3e-18
Identities = 31/227 (13%), Positives = 47/227 (20%), Gaps = 36/227 (15%)
Query: 54 ASFQCVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSA 113
C V W + + P T L + + D G + C+
Sbjct: 18 FVLTCSGSAP----VVWERMSQEP---PQEMAKAQDGTFSSVLTLTNLTGLDTGEYFCTH 70
Query: 114 LSVAGSTTVRAFLQVTSVEDTPPPIVQVGPSNQ--TLPLHSVAFLPCQAVGSPPPHIRWY 171
G T V D + L + +PC+ P + +
Sbjct: 71 NDSRGLETDERKRLYIFVPDPTVGFLPNDAEELFIFLTEITEITIPCRVTD-PQLVVTLH 129
Query: 172 KNGNSLPPEDT--------------------RINVSSSGSLQIDVLRD-----DFRAEPK 206
+ + I S V R +
Sbjct: 130 EKKGDVALPVPYDHQRGFSGIFEDRSYICKTTIGDREVDSDAYYVYRLQVSSINVSVNAV 189
Query: 207 DTRVASGETALLECGPPKGQPEPTLHWKKNGQFIDLESSKRVSILGD 253
T V GE L C G W + L D
Sbjct: 190 QTVVRQGENITLMC-IVIGNEVVNFEWTYPRKESGRLVEPVTDFLLD 235
Score = 38.9 bits (90), Expect = 0.001
Identities = 10/37 (27%), Positives = 15/37 (40%), Gaps = 1/37 (2%)
Query: 2 ITEVKKSDEGKYQCYVQNMVGE-RETKPALLTVHAPP 37
I + D G Y C V V + ++ K +TV
Sbjct: 246 IPSAELEDSGTYTCNVTESVNDHQDEKAINITVVESG 282
Score = 35.1 bits (80), Expect = 0.019
Identities = 15/152 (9%), Positives = 31/152 (20%), Gaps = 43/152 (28%)
Query: 144 SNQTLPLHSVAFLPCQAVGSPPPHIRWYKNGNSLPPEDTRINVSSSGS-LQI-DVLRDD- 200
L + S L C + W + P E + + S L + ++ D
Sbjct: 8 PELVLNVSSTFVLTCSGSAP----VVWERMSQEPPQEMAKAQDGTFSSVLTLTNLTGLDT 63
Query: 201 -------------------------------FRAEPKDTR---VASGETALLECGPPKGQ 226
F + + + C
Sbjct: 64 GEYFCTHNDSRGLETDERKRLYIFVPDPTVGFLPNDAEELFIFLTEITEITIPCRV--TD 121
Query: 227 PEPTLHWKKNGQFIDLESSKRVSILGDPWFDS 258
P+ + + + L F+
Sbjct: 122 PQLVVTLHEKKGDVALPVPYDHQRGFSGIFED 153
>3rbs_A Myomesin-1; immunoglobulin C-SET domain, contractIle protein; 1.85A
{Homo sapiens}
Length = 207
Score = 96.2 bits (239), Expect = 3e-24
Identities = 27/182 (14%), Positives = 51/182 (28%), Gaps = 20/182 (10%)
Query: 37 PSFVVRPQDQKVGLNGIASFQ-CVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEG- 94
F ++ G F + S V + ++ F G Y G
Sbjct: 3 DPFTKSELAVEILEKGQVRFWMQAEKLSGNAKVNYIFNEKEI--FEGPKYKMHIDRNTGI 60
Query: 95 -TLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVTSVEDT--------PPPIVQVGPS- 144
+ ++ +Q ED G + + L + I + GP
Sbjct: 61 IEMFMEKLQDEDEGTYTFQLQDGKATNHSTVVLVGDVFKKLQKEAEFQRQEWIRKQGPHF 120
Query: 145 ----NQTLPLHSVAFLPCQAVGSPPP-HIRWYKNGNSLPPEDTRINVSSSGSLQI-DVLR 198
+ + L C+ HI WYK+ + ++ +L I + +
Sbjct: 121 VEYLSWEVTGECNVLLKCKVANIKKETHIVWYKDEREISVDEKHDFKDGICTLLITEFSK 180
Query: 199 DD 200
D
Sbjct: 181 KD 182
Score = 72.7 bits (178), Expect = 2e-15
Identities = 25/149 (16%), Positives = 44/149 (29%), Gaps = 28/149 (18%)
Query: 1 MITEVKKSDEGKYQCYVQNMVG------------------ERETKPALLTVHAPPSFVVR 42
+ +++ DEG Y +Q+ E E + P FV
Sbjct: 64 FMEKLQDEDEGTYTFQLQDGKATNHSTVVLVGDVFKKLQKEAEFQRQEWIRKQGPHFV-E 122
Query: 43 PQDQKVGLNGIASFQCVAEGS-PLPSVFWTQEGSQVLMFPGNAYGHLHVTQEG--TLRIQ 99
+V +C + W ++ ++ + H ++G TL I
Sbjct: 123 YLSWEVTGECNVLLKCKVANIKKETHIVWYKDEREISV------DEKHDFKDGICTLLIT 176
Query: 100 GVQKEDAGFFVCSALSVAGSTTVRAFLQV 128
K+DAG + G R L
Sbjct: 177 EFSKKDAGIYEVILKDDRGKDKSRLKLVD 205
Score = 56.9 bits (137), Expect = 6e-10
Identities = 16/169 (9%), Positives = 41/169 (24%), Gaps = 53/169 (31%)
Query: 136 PPIVQVGPSNQTLPLHSVAFLPCQAVGSPPPHIRWYKNGNSLPP-EDTRINVSSSG---S 191
P + + + L V F S + + N + ++++ +
Sbjct: 3 DPFTKSELAVEILEKGQVRFWMQAEKLSGNAKVNYIFNEKEIFEGPKYKMHIDRNTGIIE 62
Query: 192 LQI-DVLRDD-----FRA-----------------------------------------E 204
+ + + +D F+ E
Sbjct: 63 MFMEKLQDEDEGTYTFQLQDGKATNHSTVVLVGDVFKKLQKEAEFQRQEWIRKQGPHFVE 122
Query: 205 PKDTRVASGETALLECGPPKGQPEPTLHWKKNGQFIDLESSKRVSILGD 253
V LL+C + E + W K+ + ++ ++
Sbjct: 123 YLSWEVTGECNVLLKCKVANIKKETHIVWYKDER--EISVDEKHDFKDG 169
Score = 43.4 bits (102), Expect = 2e-05
Identities = 4/54 (7%), Positives = 13/54 (24%), Gaps = 2/54 (3%)
Query: 201 FRAEPKDTRVASGETALLECGPPKGQPEPTLHWKKNGQFIDLESSKRVSILGDP 254
F + K +++ N + ++ + + D
Sbjct: 5 FTKSELAVEILEKGQVRFWMQAEKLSGNAKVNYIFNEK--EIFEGPKYKMHIDR 56
>2r15_A Myomesin-1; sarcomeric protein, IG-like domains, homodimer,
immunoglobul domain, muscle protein, thick filament,
contractIle protein; 2.24A {Homo sapiens}
Length = 212
Score = 95.7 bits (238), Expect = 5e-24
Identities = 31/177 (17%), Positives = 47/177 (26%), Gaps = 23/177 (12%)
Query: 44 QDQKVGLNGIASFQCVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQK 103
+ Q GI + V V W+ GS + + ++ L+I
Sbjct: 12 KIQSTA-EGIQLYSFVTYYVEDLKVNWSHNGSAI--RYSDRVKTGVTGEQIWLQINEPTP 68
Query: 104 EDAGFFVCSALSVAGSTTVRAFLQV----------------TSVEDTPPPIVQVGPSNQT 147
D G +V L E ++ P T
Sbjct: 69 NDKGKYVMELFDGKTGHQKTVDLSGQAYDEAYAEFQRLKQAAIAEKNRARVLGGLPDVVT 128
Query: 148 LPLHSVAFLPCQAVGSPPPHIRWYKNGNSLPPED---TRINVSSSGSLQI-DVLRDD 200
+ L C G PPP + W KN +L D + + I V D
Sbjct: 129 IQEGKALNLTCNVWGDPPPEVSWLKNEKALAQTDHCNLKFEAGRTAYFTINGVSTAD 185
Score = 93.0 bits (231), Expect = 6e-23
Identities = 25/149 (16%), Positives = 41/149 (27%), Gaps = 23/149 (15%)
Query: 1 MITEVKKSDEGKYQCYVQNMVGERETKPALLTVHA---------------------PPSF 39
I E +D+GKY + + + L+ A
Sbjct: 62 QINEPTPNDKGKYVMELFDGKTGHQKT-VDLSGQAYDEAYAEFQRLKQAAIAEKNRARVL 120
Query: 40 VVRPQDQKVGLNGIASFQCVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQ 99
P + + C G P P V W + + L + + I
Sbjct: 121 GGLPDVVTIQEGKALNLTCNVWGDPPPEVSWLKNE-KALAQTDHCNLKFEAGRTAYFTIN 179
Query: 100 GVQKEDAGFFVCSALSVAGSTTVRAFLQV 128
GV D+G + + GS T + V
Sbjct: 180 GVSTADSGKYGLVVKNKYGSETSDFTVSV 208
Score = 39.9 bits (93), Expect = 4e-04
Identities = 8/44 (18%), Positives = 14/44 (31%), Gaps = 2/44 (4%)
Query: 210 VASGETALLECGPPKGQPEPTLHWKKNGQFIDLESSKRVSILGD 253
++ E L + ++W NG + S RV
Sbjct: 14 QSTAEGIQLYSFVTYYVEDLKVNWSHNGS--AIRYSDRVKTGVT 55
>2fbo_J V1V2;, variable region-containing chitin-binding protein 3;
immunoglobulin, VCBP, V-type, V SET, immune system;
1.85A {Branchiostoma floridae}
Length = 250
Score = 96.5 bits (239), Expect = 6e-24
Identities = 24/157 (15%), Positives = 38/157 (24%), Gaps = 27/157 (17%)
Query: 2 ITEVKKSDEGKYQCYVQNMVGERETKPALLTVH--------APPSFVVRPQDQKVGLNGI 53
+T V D G+Y C V E +V + V + +V
Sbjct: 94 LTHVHPQDGGRYWCQVAQWSIRTEFGLDAKSVVLKVTGHTPSNNVHVSTAEVVQVDEGND 153
Query: 54 ASFQCVAEGSPLPSVFWTQEGSQV-------------------LMFPGNAYGHLHVTQEG 94
+ C +V W + F G +
Sbjct: 154 ITMTCPCTDCANANVTWYTGPTFFENYETGTYQPLANKNQFGITWFSSEIAGRASFSGAR 213
Query: 95 TLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVTSV 131
L I+ + DAG C + G + V
Sbjct: 214 NLVIRAAKITDAGRVWCELATGQGELDADRSSTILKV 250
Score = 79.6 bits (195), Expect = 1e-17
Identities = 28/230 (12%), Positives = 57/230 (24%), Gaps = 64/230 (27%)
Query: 29 ALLTVHAPPSFVVRPQDQKVGLNGIASFQC---VAEGSPLPSVFWTQEGSQ--------- 76
+++TV + +V G C +A + P + W + S
Sbjct: 1 SIMTVRTTH------TEVEVHAGGTVELPCSYQLANDTQPPVISWLKGASPDRSTKVFKG 54
Query: 77 --VLMFPGNAYGHLHVTQE----------------GTLRIQGVQKEDAGFFVCSALSVAG 118
G + +E TLR+ V +D G + C +
Sbjct: 55 NYNWQGEGLGFVESDSYKESFGDFLGRASVANLAAPTLRLTHVHPQDGGRYWCQVAQWSI 114
Query: 119 STTV----RAFLQVTSVEDTPPPIVQVGPSNQTLPLHSVAFLPCQAVGSPPPHIRWYKNG 174
T ++ + + + + + + C ++ WY
Sbjct: 115 RTEFGLDAKSVVLKVTGHTPSNNVHVSTAEVVQVDEGNDITMTCPCTDCANANVTWYTGP 174
Query: 175 NSLPPEDT-----------------------RINVSSSGSLQI-DVLRDD 200
+T R + S + +L I D
Sbjct: 175 TFFENYETGTYQPLANKNQFGITWFSSEIAGRASFSGARNLVIRAAKITD 224
Score = 35.7 bits (81), Expect = 0.010
Identities = 9/39 (23%), Positives = 12/39 (30%), Gaps = 2/39 (5%)
Query: 202 RAEPKDTRVASGETALLEC--GPPKGQPEPTLHWKKNGQ 238
R + V +G T L C P + W K
Sbjct: 6 RTTHTEVEVHAGGTVELPCSYQLANDTQPPVISWLKGAS 44
>2kkq_A Myotilin; unknown function, actin-binding, cell membrane,
cytoplasm, cytoskeleton, disease mutation,
immunoglobulin domain; NMR {Homo sapiens}
Length = 116
Score = 91.7 bits (228), Expect = 2e-23
Identities = 32/117 (27%), Positives = 49/117 (41%), Gaps = 1/117 (0%)
Query: 21 VGERETKPALLTVHAPPSFVVRPQDQKVGLNGIASFQCVAEGSPLPSVFWTQEGSQVLMF 80
+G + P F+ +PQ +KV +C P P +FW + V
Sbjct: 1 MGHHHHHHSH-EHKRAPMFIYKPQSKKVLEGDSVKLECQISAIPPPKLFWKRNNEMVQFN 59
Query: 81 PGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVTSVEDTPPP 137
+ T TL I+ V K+DAG++ SA++ AG TT L VT+ + P
Sbjct: 60 TDRISLYQDNTGRVTLLIKDVNKKDAGWYTVSAVNEAGVTTCNTRLDVTARPNQTLP 116
Score = 59.3 bits (144), Expect = 1e-11
Identities = 19/76 (25%), Positives = 30/76 (39%), Gaps = 5/76 (6%)
Query: 130 SVEDTPPPIVQVGPSNQTLPLHSVAFLPCQAVGSPPPHIRWYKNGNSLPPEDTRINVSSS 189
S E P+ P ++ + L CQ PPP + W +N + RI++
Sbjct: 9 SHEHKRAPMFIYKPQSKKVLEGDSVKLECQISAIPPPKLFWKRNNEMVQFNTDRISLYQD 68
Query: 190 G----SLQI-DVLRDD 200
+L I DV + D
Sbjct: 69 NTGRVTLLIKDVNKKD 84
Score = 51.2 bits (123), Expect = 1e-08
Identities = 16/53 (30%), Positives = 28/53 (52%), Gaps = 2/53 (3%)
Query: 201 FRAEPKDTRVASGETALLECGPPKGQPEPTLHWKKNGQFIDLESSKRVSILGD 253
F +P+ +V G++ LEC P P L WK+N + + ++ R+S+ D
Sbjct: 18 FIYKPQSKKVLEGDSVKLEC-QISAIPPPKLFWKRNNEMVQ-FNTDRISLYQD 68
Score = 49.7 bits (119), Expect = 5e-08
Identities = 12/41 (29%), Positives = 16/41 (39%), Gaps = 1/41 (2%)
Query: 1 MITEVKKSDEGKYQCYVQNMVGERETKPALLTVHAPPSFVV 41
+I +V K D G Y N G L V A P+ +
Sbjct: 76 LIKDVNKKDAGWYTVSAVNEAGVTTCN-TRLDVTARPNQTL 115
>1hng_A CD2; T lymphocyte adhesion glycoprotein; 2.80A {Rattus rattus}
SCOP: b.1.1.1 b.1.1.3
Length = 176
Score = 93.1 bits (231), Expect = 3e-23
Identities = 22/133 (16%), Positives = 46/133 (34%), Gaps = 13/133 (9%)
Query: 57 QCVAEGSPLPSVFWTQEGSQVLMFPGNAY-----GHLHVTQEGTLRIQGVQKEDAGFFVC 111
+ V W + + V F G + G L+I+ + ++D+G +
Sbjct: 19 PNFQMTDDIDEVRWERGSTLVAEFKRKMKPFLKSGAFEILANGDLKIKNLTRDDSGTYNV 78
Query: 112 SALSVAGSTTVRAFLQVTSVEDTPPPIVQVGPSNQTLPLHSVAFLPCQAVGSPPPHIRWY 171
+ S G+ + L + +E P++ SN T L C+ + ++ Y
Sbjct: 79 TVYSTNGTRILNKALDLRILEMVSKPMIYWECSNAT--------LTCEVLEGTDVELKLY 130
Query: 172 KNGNSLPPEDTRI 184
+ L +
Sbjct: 131 QGKEHLRSLRQKT 143
Score = 50.0 bits (119), Expect = 9e-08
Identities = 18/136 (13%), Positives = 39/136 (28%), Gaps = 37/136 (27%)
Query: 151 HSVAF-LPCQAVGSPPPHIRWYKNGNSL---------PPEDTRINVSSSGSLQI-DVLRD 199
H + +P + +RW + + + + ++G L+I ++ RD
Sbjct: 12 HGINLNIPNFQMTDDIDEVRWERGSTLVAEFKRKMKPFLKSGAFEILANGDLKIKNLTRD 71
Query: 200 D----------------------FRAEPKDTR---VASGETALLECGPPKGQPEPTLHWK 234
D R ++ A L C +G + L
Sbjct: 72 DSGTYNVTVYSTNGTRILNKALDLRILEMVSKPMIYWECSNATLTCEVLEG-TDVELKLY 130
Query: 235 KNGQFIDLESSKRVSI 250
+ + + K +S
Sbjct: 131 QGKEHLRSLRQKTMSY 146
Score = 48.0 bits (114), Expect = 5e-07
Identities = 20/114 (17%), Positives = 29/114 (25%), Gaps = 19/114 (16%)
Query: 1 MITEVKKSDEGKYQCYVQNMVGERETKPAL-LTVHAPPSFVVRPQDQKVGLNGIASFQCV 59
I + + D G Y V + G R AL L + S +P N A+ C
Sbjct: 64 KIKNLTRDDSGTYNVTVYSTNGTRILNKALDLRILEMVS---KPMIYWECSN--ATLTCE 118
Query: 60 AEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSA 113
+ Q H+ + F C A
Sbjct: 119 VLEGTDVELKLYQGKE-------------HLRSLRQKTMSYQWTNLRAPFKCKA 159
Score = 28.0 bits (62), Expect = 2.9
Identities = 3/29 (10%), Positives = 10/29 (34%)
Query: 2 ITEVKKSDEGKYQCYVQNMVGERETKPAL 30
++ + ++C N V + +
Sbjct: 144 MSYQWTNLRAPFKCKAVNRVSQESEMEVV 172
Score = 26.8 bits (59), Expect = 6.4
Identities = 6/51 (11%), Positives = 11/51 (21%), Gaps = 1/51 (1%)
Query: 204 EPKDTRVASGETALLEC-GPPKGQPEPTLHWKKNGQFIDLESSKRVSILGD 253
+ A G L + W++ + K L
Sbjct: 2 DSGTVWGALGHGINLNIPNFQMTDDIDEVRWERGSTLVAEFKRKMKPFLKS 52
>2ocw_A Polymeric-immunoglobulin receptor; SC, secretory, antibody,
immunity, immune system; NMR {Homo sapiens} PDB: 3chn_S
3cm9_S 3chn_J 3cm9_J
Length = 585
Score = 95.8 bits (237), Expect = 2e-22
Identities = 34/202 (16%), Positives = 62/202 (30%), Gaps = 10/202 (4%)
Query: 1 MITEVKKSDEGKYQCYVQNMVGERETKPALLTVHAPPSFVVRPQDQKVGLN--------G 52
+I +++ SD G+Y C + + L + P V V +
Sbjct: 188 VINQLRLSDAGQYLCQAGDDSNSNKKNADLQVLKPEPELVYEDLRGSVTFHCALGPEVAN 247
Query: 53 IASFQCVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEG-TLRIQGVQKEDAGFFVC 111
+A F C V G + F G + ++ I G++KEDAG ++C
Sbjct: 248 VAKFLCRQSSGENCDVVVNTLGKRAPAFEGRILLNPQDKDGSFSVVITGLRKEDAGRYLC 307
Query: 112 SALSVAGSTTVRAFLQVTSVEDTPPPIVQVGPSNQTLPLHSVAFLPCQAVGSPPPHIRWY 171
A S + + P+ S + C I+++
Sbjct: 308 GAHSDGQLQEGSPIQAWQLFVN-EESTIPRSPTVVKGVAGSSVAVLCPYNRKESKSIKYW 366
Query: 172 KNGNSLPPEDTRINVSSSGSLQ 193
+ V S G ++
Sbjct: 367 CLWEGAQNGRCPLLVDSEGWVK 388
Score = 93.5 bits (231), Expect = 1e-21
Identities = 46/329 (13%), Positives = 95/329 (28%), Gaps = 82/329 (24%)
Query: 2 ITEVKKSDEGKYQCYVQNMVGERETKPALLTVHAPPSFVVRPQDQKVGLNGIASFQCVAE 61
I ++ + D G+Y+C + + L V P + + V L + C +
Sbjct: 79 IAQLSQDDSGRYKCGLGI-NSRGLSFDVSLEVSQGPGLLNDTKVYTVDLGRTVTINCPFK 137
Query: 62 GSPLPSVFW-------------TQEGSQVLMFPGNAYGHLHVTQEG--TLRIQGVQKEDA 106
G + G + T + ++ I ++ DA
Sbjct: 138 TENAQKRKSLYKQIGLYPVLVIDSSGYVNPNYTGRIRLDIQGTGQLLFSVVINQLRLSDA 197
Query: 107 GFFVCSALSVAGSTTVRAFLQVTSVEDTPPPIVQVGPSNQTLPLH--------SVAFLPC 158
G ++C A + S A LQV P P + ++ H +VA C
Sbjct: 198 GQYLCQAGDDSNSNKKNADLQVL----KPEPELVYEDLRGSVTFHCALGPEVANVAKFLC 253
Query: 159 QAVGSPPPHIRWYKNGNSLPPEDTRINVSSSG-----SLQI-DVLRDD------------ 200
+ + G P + RI ++ S+ I + ++D
Sbjct: 254 RQSSGENCDVVVNTLGKRAPAFEGRILLNPQDKDGSFSVVITGLRKEDAGRYLCGAHSDG 313
Query: 201 --------------------FRAEPKDTRVASGETALLECGPPKGQPEPTLHW------- 233
P + +G + + C P + ++ +
Sbjct: 314 QLQEGSPIQAWQLFVNEESTIPRSPTVVKGVAGSSVAVLC-PYNRKESKSIKYWCLWEGA 372
Query: 234 --------KKNGQFIDLESSKRVSILGDP 254
+ ++ + R+S+L +P
Sbjct: 373 QNGRCPLLVDSEGWVKAQYEGRLSLLEEP 401
Score = 84.7 bits (208), Expect = 1e-18
Identities = 37/215 (17%), Positives = 62/215 (28%), Gaps = 25/215 (11%)
Query: 1 MITEVKKSDEGKYQCYVQNMVGERETKPALLT---VHAPPSFVVRPQDQKVGLNGIASFQ 57
+IT ++K D G+Y C + +E P V+ + P K +
Sbjct: 293 VITGLRKEDAGRYLCGAHSDGQLQEGSPIQAWQLFVNEESTIPRSPTVVKGVAGSSVAVL 352
Query: 58 CVAEGSPLPSVFW--TQEGSQVLMFPGNAY--GHLHVTQEG-------------TLRIQG 100
C S+ + EG+Q P G + EG T+ +
Sbjct: 353 CPYNRKESKSIKYWCLWEGAQNGRCPLLVDSEGWVKAQYEGRLSLLEEPGNGTFTVILNQ 412
Query: 101 VQKEDAGFFVCSALSVAGSTTVRAFLQVTSVEDTPPPIVQVGPSNQTLPLHSVAFLPCQA 160
+ DAGF+ C T + + P +TL + PC+
Sbjct: 413 LTSRDAGFYWCLTNGDTLWRTTVEIKIIEGEPNLKVPGNVTAVLGETLKVP--CHFPCKF 470
Query: 161 VGSPPPHIRWYKNGNSLPPEDTRINVSSSGSLQID 195
+W G P + S +
Sbjct: 471 SSYEKYWCKWNNTGCQALPSQ---DEGPSKAFVNC 502
Score = 75.0 bits (183), Expect = 2e-15
Identities = 26/175 (14%), Positives = 44/175 (25%), Gaps = 10/175 (5%)
Query: 2 ITEVKKSDEGKYQCYVQNMVGERETKPALLTVHAPPSFVVRPQDQKVGLNGI--ASFQCV 59
+ ++ D G Y C R T + P V +G F C
Sbjct: 410 LNQLTSRDAGFYWCLTNGDTLWRTTVEIKIIEGEPNLKVPGNVTAVLGETLKVPCHFPCK 469
Query: 60 AEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQE-----GTLRIQGVQKEDAGFFVCSAL 114
W G Q L V + +L + V + D G++ C
Sbjct: 470 FSSYEKYWCKWNNTGCQALPSQDEGPSKAFVNCDENSRLVSLTLNLVTRADEGWYWCGVK 529
Query: 115 S-VAGSTTVRAFLQVTSVEDTPPPIVQV--GPSNQTLPLHSVAFLPCQAVGSPPP 166
T ++ V + V + + + F + P
Sbjct: 530 QGHFYGETAAVYVAVEERKAAGSRDVSLAKADAAPDEKVLDSGFREIENKAIQDP 584
Score = 51.5 bits (122), Expect = 1e-07
Identities = 20/160 (12%), Positives = 46/160 (28%), Gaps = 22/160 (13%)
Query: 38 SFVVRPQDQKVGLNGIASFQCVAE---GSPLPSVFWTQEGSQVLMFPGNAY-GHLHVTQE 93
S + P++ S C + +W ++G++ + G++
Sbjct: 2 SPIFGPEEVNSVEGNSVSITCYYPPTSVNRHTRKYWCRQGARGGCITLISSEGYVSSKYA 61
Query: 94 G-------------TLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVTSVEDTPPPIVQ 140
G + I + ++D+G + C + + S+E + P +
Sbjct: 62 GRANLTNFPENGTFVVNIAQLSQDDSGRYKCGLGINSRGLSFDV-----SLEVSQGPGLL 116
Query: 141 VGPSNQTLPLHSVAFLPCQAVGSPPPHIRWYKNGNSLPPE 180
T+ L + C + L P
Sbjct: 117 NDTKVYTVDLGRTVTINCPFKTENAQKRKSLYKQIGLYPV 156
Score = 44.2 bits (103), Expect = 3e-05
Identities = 13/64 (20%), Positives = 23/64 (35%), Gaps = 2/64 (3%)
Query: 1 MITEVKKSDEGKYQCYVQNMVGERETKPALLTVHAPPSFVVRPQDQKVGLNGIASFQCVA 60
+ V ++DEG Y C V+ ET + V + +D + A + V
Sbjct: 512 TLNLVTRADEGWYWCGVKQGHFYGETAAVYVAVEERKAAG--SRDVSLAKADAAPDEKVL 569
Query: 61 EGSP 64
+
Sbjct: 570 DSGF 573
Score = 31.9 bits (71), Expect = 0.25
Identities = 8/64 (12%), Positives = 20/64 (31%), Gaps = 14/64 (21%)
Query: 205 PKDTRVASGETALLEC--GPPKGQPEPTLHWKKNG------------QFIDLESSKRVSI 250
P++ G + + C P +W + G ++ + + R ++
Sbjct: 7 PEEVNSVEGNSVSITCYYPPTSVNRHTRKYWCRQGARGGCITLISSEGYVSSKYAGRANL 66
Query: 251 LGDP 254
P
Sbjct: 67 TNFP 70
Score = 27.7 bits (60), Expect = 6.4
Identities = 22/178 (12%), Positives = 41/178 (23%), Gaps = 53/178 (29%)
Query: 141 VGPSNQTLPLHSVAFLPCQ---AVGSPPPHIRWYK-------------NGNSLPPEDTRI 184
GP + + C + W + G R
Sbjct: 5 FGPEEVNSVEGNSVSITCYYPPTSVNRHTRKYWCRQGARGGCITLISSEGYVSSKYAGRA 64
Query: 185 NV-----SSSGSLQIDVLRDD-----------------------------FRAEPKDTRV 210
N+ + + + I L D + K V
Sbjct: 65 NLTNFPENGTFVVNIAQLSQDDSGRYKCGLGINSRGLSFDVSLEVSQGPGLLNDTKVYTV 124
Query: 211 ASGETALLECG-PPKGQPEPTLHWKKNGQFIDLESSKRVSILGDPWFDSRRSRSIFGS 267
G T + C + + +K+ G + L + +P + R I G+
Sbjct: 125 DLGRTVTINCPFKTENAQKRKSLYKQIGLYPVLVIDSSGYV--NPNYTGRIRLDIQGT 180
>3irg_A Titin; IG-like, titin, OBSL1, complex, alternative splicing,
ATP-binding, calcium, calmodulin-binding,
cardiomyopathy; 1.30A {Homo sapiens} PDB: 3knb_A 3q5o_A
2wp3_T* 2wwk_T 2wwm_D 2y9r_T*
Length = 100
Score = 87.4 bits (217), Expect = 4e-22
Identities = 25/99 (25%), Positives = 39/99 (39%), Gaps = 6/99 (6%)
Query: 36 PPSFVVRPQDQKVGLNGIASFQCVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEG- 94
PP P D + + + C G P P V W+ G ++ G H+
Sbjct: 5 PPKIEALPSDISIDEGKVLTVACAFTGEPTPEVTWSCGGRKI---HSQEQGRFHIENTDD 61
Query: 95 --TLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVTSV 131
TL I VQK+D G + S + GS + + + S+
Sbjct: 62 LTTLIIMDVQKQDGGLYTLSLGNEFGSDSATVNIHIRSI 100
Score = 61.6 bits (150), Expect = 1e-12
Identities = 18/70 (25%), Positives = 32/70 (45%), Gaps = 5/70 (7%)
Query: 136 PPIVQVGPSNQTLPLHSVAFLPCQAVGSPPPHIRWYKNGNSLPP-EDTRINVSSSG---S 191
PP ++ PS+ ++ V + C G P P + W G + E R ++ ++ +
Sbjct: 5 PPKIEALPSDISIDEGKVLTVACAFTGEPTPEVTWSCGGRKIHSQEQGRFHIENTDDLTT 64
Query: 192 LQI-DVLRDD 200
L I DV + D
Sbjct: 65 LIIMDVQKQD 74
Score = 46.9 bits (112), Expect = 3e-07
Identities = 13/53 (24%), Positives = 20/53 (37%), Gaps = 1/53 (1%)
Query: 201 FRAEPKDTRVASGETALLECGPPKGQPEPTLHWKKNGQFIDLESSKRVSILGD 253
A P D + G+ + C G+P P + W G+ I + R I
Sbjct: 8 IEALPSDISIDEGKVLTVAC-AFTGEPTPEVTWSCGGRKIHSQEQGRFHIENT 59
Score = 39.2 bits (92), Expect = 1e-04
Identities = 8/35 (22%), Positives = 15/35 (42%), Gaps = 1/35 (2%)
Query: 1 MITEVKKSDEGKYQCYVQNMVGERETKPALLTVHA 35
+I +V+K D G Y + N G + + +
Sbjct: 66 IIMDVQKQDGGLYTLSLGNEFGSDSAT-VNIHIRS 99
>2v9t_A Roundabout homolog 1; structural protein-receptor complex,
developmental protein, domain, roundabout, chemotaxis,
LRR domain; 1.70A {Homo sapiens}
Length = 117
Score = 86.8 bits (215), Expect = 1e-21
Identities = 29/111 (26%), Positives = 45/111 (40%), Gaps = 6/111 (5%)
Query: 29 ALLTVHAPPSFVVRPQDQKVGLNGIASFQCVAEGSPLPSVFWTQEGSQVLMFPGNAYGHL 88
+L PP V P D V A+ C AEG P P++ W + G +V + H
Sbjct: 2 SLRQEDFPPRIVEHPSDLIVSKGEPATLNCKAEGRPTPTIEWYKGGERVETDKDDPRSHR 61
Query: 89 HVTQEGTLRIQGVQ-----KEDAGFFVCSALSVAGS-TTVRAFLQVTSVED 133
+ G+L + + D G +VC A + G + A L+V +
Sbjct: 62 MLLPSGSLFFLRIVHGRKSRPDEGVYVCVARNYLGEAVSHDASLEVAAAAH 112
Score = 66.8 bits (163), Expect = 4e-14
Identities = 26/82 (31%), Positives = 35/82 (42%), Gaps = 6/82 (7%)
Query: 131 VEDTPPPIVQVGPSNQTLPLHSVAFLPCQAVGSPPPHIRWYKNGNSLPPED----TRINV 186
ED PP IV+ PS+ + A L C+A G P P I WYK G + + + +
Sbjct: 5 QEDFPPRIVEH-PSDLIVSKGEPATLNCKAEGRPTPTIEWYKGGERVETDKDDPRSHRML 63
Query: 187 SSSGSLQIDVLRDDFRAEPKDT 208
SGSL + R D
Sbjct: 64 LPSGSLFFLRIVHG-RKSRPDE 84
Score = 51.0 bits (122), Expect = 1e-08
Identities = 19/60 (31%), Positives = 29/60 (48%), Gaps = 1/60 (1%)
Query: 190 GSLQIDVLRDDFRAEPKDTRVASGETALLECGPPKGQPEPTLHWKKNGQFIDLESSKRVS 249
GSL+ + P D V+ GE A L C +G+P PT+ W K G+ ++ + S
Sbjct: 1 GSLRQEDFPPRIVEHPSDLIVSKGEPATLNCKA-EGRPTPTIEWYKGGERVETDKDDPRS 59
Score = 47.5 bits (113), Expect = 3e-07
Identities = 12/41 (29%), Positives = 17/41 (41%)
Query: 1 MITEVKKSDEGKYQCYVQNMVGERETKPALLTVHAPPSFVV 41
+ + DEG Y C +N +GE + A L V A
Sbjct: 75 VHGRKSRPDEGVYVCVARNYLGEAVSHDASLEVAAAAHHHH 115
>3puc_A Titin; I-SET IG-like domain, M-BAND, transferase; 0.96A {Homo
sapiens}
Length = 99
Score = 85.8 bits (213), Expect = 2e-21
Identities = 25/102 (24%), Positives = 45/102 (44%), Gaps = 8/102 (7%)
Query: 33 VHAPPSFVVRPQDQKVGLNGIASFQCVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQ 92
+ + P V QD V + +A F A G P P+ WT++G + G G +++
Sbjct: 3 ISSKPVIVTGLQDTTVSSDSVAKFAVKATGEPRPTAIWTKDGKAI--TQG---GKYKLSE 57
Query: 93 EG---TLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVTSV 131
+ L I D+G + C+ + AGS + L + ++
Sbjct: 58 DKGGFFLEIHKTDTSDSGLYTCTVKNSAGSVSSSCKLTIKAI 99
Score = 56.1 bits (136), Expect = 2e-10
Identities = 17/69 (24%), Positives = 28/69 (40%), Gaps = 5/69 (7%)
Query: 136 PPIVQVGPSNQTLPLHSVAFLPCQAVGSPPPHIRWYKNGNSLPPEDTRINVSSSG---SL 192
P++ G + T+ SVA +A G P P W K+G ++ + +S L
Sbjct: 6 KPVIVTGLQDTTVSSDSVAKFAVKATGEPRPTAIWTKDGKAITQGG-KYKLSEDKGGFFL 64
Query: 193 QI-DVLRDD 200
+I D
Sbjct: 65 EIHKTDTSD 73
Score = 48.4 bits (116), Expect = 7e-08
Identities = 13/53 (24%), Positives = 21/53 (39%), Gaps = 3/53 (5%)
Query: 201 FRAEPKDTRVASGETALLECGPPKGQPEPTLHWKKNGQFIDLESSKRVSILGD 253
+DT V+S A G+P PT W K+G+ + + + D
Sbjct: 9 IVTGLQDTTVSSDSVAKFAV-KATGEPRPTAIWTKDGK--AITQGGKYKLSED 58
Score = 42.3 bits (100), Expect = 1e-05
Identities = 12/34 (35%), Positives = 16/34 (47%), Gaps = 1/34 (2%)
Query: 2 ITEVKKSDEGKYQCYVQNMVGERETKPALLTVHA 35
I + SD G Y C V+N G + LT+ A
Sbjct: 66 IHKTDTSDSGLYTCTVKNSAGSVSSS-CKLTIKA 98
>1hnf_A CD2; T lymphocyte adhesion glycoprotein; HET: NAG; 2.50A {Homo
sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1cdb_A 1gya_A*
1qa9_A
Length = 182
Score = 88.0 bits (218), Expect = 2e-21
Identities = 21/143 (14%), Positives = 43/143 (30%), Gaps = 15/143 (10%)
Query: 57 QCVAEGSPLPSVFWTQEGSQVLMF-------PGNAYGHLHVTQEGTLRIQGVQKEDAGFF 109
+ + W + + + + + GTL+I+ ++ +D +
Sbjct: 22 PSFQMSDDIDDIKWEKTSDKKKIAQFRKEKETFKEKDTYKLFKNGTLKIKHLKTDDQDIY 81
Query: 110 VCSALSVAGSTTVRAFLQVTSVEDTPPPIVQVGPSNQTLPLHSVAFLPCQAVGSPPPHIR 169
S G + + E P + N T L C+ + P +
Sbjct: 82 KVSIYDTKGKNVLEKIFDLKIQERVSKPKISWTCINTT--------LTCEVMNGTDPELN 133
Query: 170 WYKNGNSLPPEDTRINVSSSGSL 192
Y++G L I + SL
Sbjct: 134 LYQDGKHLKLSQRVITHKWTTSL 156
Score = 61.1 bits (148), Expect = 2e-11
Identities = 17/129 (13%), Positives = 38/129 (29%), Gaps = 19/129 (14%)
Query: 2 ITEVKKSDEGKYQCYVQNMVGERETKPAL-LTVHAPPSFVVRPQDQKVGLNGIASFQCVA 60
I +K D+ Y+ + + G+ + L + S +P+ +N + C
Sbjct: 70 IKHLKTDDQDIYKVSIYDTKGKNVLEKIFDLKIQERVS---KPKISWTCIN--TTLTCEV 124
Query: 61 EGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGST 120
P + Q+G H+ + + F C+A +
Sbjct: 125 MNGTDPELNLYQDGK-------------HLKLSQRVITHKWTTSLSAKFKCTAGNKVSKE 171
Query: 121 TVRAFLQVT 129
+ +
Sbjct: 172 SSVEPVSCP 180
Score = 53.7 bits (129), Expect = 6e-09
Identities = 21/151 (13%), Positives = 40/151 (26%), Gaps = 42/151 (27%)
Query: 132 EDTPPPIVQVGPSNQTLPLHSVAFLPCQAVGSPPPHIRWYK-----------NGNSLPPE 180
++ + G Q + L +P + I+W K E
Sbjct: 1 KEITNALETWGALGQDINLD----IPSFQMSDDIDDIKWEKTSDKKKIAQFRKEKETFKE 56
Query: 181 DTRINVSSSGSLQI-DVLRDD-------------------------FRAEPKDTRVASGE 214
+ +G+L+I + DD K +
Sbjct: 57 KDTYKLFKNGTLKIKHLKTDDQDIYKVSIYDTKGKNVLEKIFDLKIQERVSKPKISWTCI 116
Query: 215 TALLECGPPKGQPEPTLHWKKNGQFIDLESS 245
L C G +P L+ ++G+ + L
Sbjct: 117 NTTLTCEVMNG-TDPELNLYQDGKHLKLSQR 146
Score = 27.5 bits (61), Expect = 4.3
Identities = 6/33 (18%), Positives = 14/33 (42%), Gaps = 1/33 (3%)
Query: 1 MITEVKKSDEGKYQCYVQNMVGERETKPALLTV 33
+ + S K++C N V + E+ ++
Sbjct: 148 ITHKWTTSLSAKFKCTAGNKVSK-ESSVEPVSC 179
>2yr3_A Myosin light chain kinase, smooth muscle; IG domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 99
Score = 85.1 bits (211), Expect = 4e-21
Identities = 23/100 (23%), Positives = 34/100 (34%), Gaps = 5/100 (5%)
Query: 29 ALLTVHAPPSFVVRPQDQKVGLNGIASFQCVAEGSPLPSVFWTQEGSQVLMFPGNAYGHL 88
+ PSF +D V QC G+P+P + W G +
Sbjct: 4 GSSGMEVAPSFSSVLKDCAVIEGQDFVLQCSVRGTPVPRITWLLNGQPI-----QYARST 58
Query: 89 HVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQV 128
L IQ ED G + C A + G + A++ V
Sbjct: 59 CEAGVAELHIQDALPEDHGTYTCLAENALGQVSCSAWVTV 98
Score = 57.7 bits (140), Expect = 4e-11
Identities = 15/66 (22%), Positives = 21/66 (31%), Gaps = 2/66 (3%)
Query: 136 PPIVQVGPSNQTLPLHSVAFLPCQAVGSPPPHIRWYKNGNSLPPEDTRINVSSSGSLQI- 194
P + + L C G+P P I W NG + + L I
Sbjct: 11 APSFSSVLKDCAVIEGQDFVLQCSVRGTPVPRITWLLNGQPIQY-ARSTCEAGVAELHIQ 69
Query: 195 DVLRDD 200
D L +D
Sbjct: 70 DALPED 75
Score = 48.1 bits (115), Expect = 1e-07
Identities = 15/53 (28%), Positives = 25/53 (47%), Gaps = 3/53 (5%)
Query: 201 FRAEPKDTRVASGETALLECGPPKGQPEPTLHWKKNGQFIDLESSKRVSILGD 253
F + KD V G+ +L+C +G P P + W NGQ ++ ++ G
Sbjct: 14 FSSVLKDCAVIEGQDFVLQC-SVRGTPVPRITWLLNGQ--PIQYARSTCEAGV 63
Score = 40.4 bits (95), Expect = 6e-05
Identities = 11/34 (32%), Positives = 16/34 (47%), Gaps = 1/34 (2%)
Query: 1 MITEVKKSDEGKYQCYVQNMVGERETKPALLTVH 34
I + D G Y C +N +G+ A +TVH
Sbjct: 67 HIQDALPEDHGTYTCLAENALGQVSCS-AWVTVH 99
>3irg_B Obscurin-like protein 1; IG-like, titin, OBSL1, complex,
alternative splicing, ATP-binding, calcium,
calmodulin-binding, cardiomyopathy; 1.30A {Homo sapiens}
PDB: 3knb_B 2wp3_O* 2wwm_C 2wwk_O
Length = 107
Score = 85.1 bits (211), Expect = 4e-21
Identities = 30/106 (28%), Positives = 43/106 (40%), Gaps = 8/106 (7%)
Query: 26 TKPALLTVHAPPSFVVRPQDQKVGLNGIASFQCVAEGSPLPSVFWTQEGSQVLMFPGNAY 85
K + +PP F+ P+ +V A +CV G P P V W + G Q+ A
Sbjct: 3 MKASSGDQGSPPCFLRFPRPVRVVSGAEAELKCVVLGEPPPVVVWEKGGQQL-----AAS 57
Query: 86 GHLHVTQEG---TLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQV 128
L +G L + DAG +VC A + AG A + V
Sbjct: 58 ERLSFPADGAEHGLLLTAALPTDAGVYVCRARNAAGEAYAAAAVTV 103
Score = 62.8 bits (153), Expect = 7e-13
Identities = 20/79 (25%), Positives = 32/79 (40%), Gaps = 5/79 (6%)
Query: 126 LQVTSVEDTPPPIVQVGPSNQTLPLHSVAFLPCQAVGSPPPHIRWYKNGNSLPPEDTRIN 185
++ +S + PP P + + A L C +G PPP + W K G L R++
Sbjct: 3 MKASSGDQGSPPCFLRFPRPVRVVSGAEAELKCVVLGEPPPVVVWEKGGQQLAA-SERLS 61
Query: 186 VSSSG---SLQI-DVLRDD 200
+ G L + L D
Sbjct: 62 FPADGAEHGLLLTAALPTD 80
Score = 50.5 bits (121), Expect = 2e-08
Identities = 21/54 (38%), Positives = 29/54 (53%), Gaps = 3/54 (5%)
Query: 201 FRAEPKDTRVASGETALLECGPPKGQPEPTLHWKKNGQFIDLESSKRVSILGDP 254
F P+ RV SG A L+C G+P P + W+K GQ L +S+R+S D
Sbjct: 16 FLRFPRPVRVVSGAEAELKC-VVLGEPPPVVVWEKGGQ--QLAASERLSFPADG 66
Score = 46.2 bits (110), Expect = 6e-07
Identities = 13/36 (36%), Positives = 17/36 (47%), Gaps = 1/36 (2%)
Query: 2 ITEVKKSDEGKYQCYVQNMVGERETKPALLTVHAPP 37
+T +D G Y C +N GE A +TV PP
Sbjct: 73 LTAALPTDAGVYVCRARNAAGEAYAA-AAVTVLEPP 107
>2ens_A Advanced glycosylation END product-specific receptor;
beta-sandwich, C2-SET, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 96
Score = 84.4 bits (209), Expect = 5e-21
Identities = 17/101 (16%), Positives = 33/101 (32%), Gaps = 11/101 (10%)
Query: 32 TVHAPPSFVVRPQDQKVGLNGIASFQCVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVT 91
+ VV P+ V G + C P P + W ++G L +
Sbjct: 6 SGLEEVQLVVEPEGGAVAPGGTVTLTCEVPAQPSPQIHWMKDGVP-----------LPLP 54
Query: 92 QEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVTSVE 132
L + + +D G + C A + + ++ +E
Sbjct: 55 PSPVLILPEIGPQDQGTYSCVATHSSHGPQESRAVSISIIE 95
Score = 61.7 bits (150), Expect = 1e-12
Identities = 15/66 (22%), Positives = 22/66 (33%), Gaps = 8/66 (12%)
Query: 136 PPIVQVGPSNQTLPLHSVAFLPCQAVGSPPPHIRWYKNGNSLPPEDTRINVSSSGSLQI- 194
+ V P + L C+ P P I W K+G LP S L +
Sbjct: 10 EVQLVVEPEGGAVAPGGTVTLTCEVPAQPSPQIHWMKDGVPLPL-------PPSPVLILP 62
Query: 195 DVLRDD 200
++ D
Sbjct: 63 EIGPQD 68
Score = 52.8 bits (127), Expect = 2e-09
Identities = 18/50 (36%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
Query: 201 FRAEPKDTRVASGETALLECGPPKGQPEPTLHWKKNGQFIDLESSKRVSI 250
EP+ VA G T L C P QP P +HW K+G + L S + +
Sbjct: 13 LVVEPEGGAVAPGGTVTLTCEVP-AQPSPQIHWMKDGVPLPLPPSPVLIL 61
Score = 40.5 bits (95), Expect = 5e-05
Identities = 7/37 (18%), Positives = 18/37 (48%), Gaps = 1/37 (2%)
Query: 1 MITEVKKSDEGKYQCYVQNMVGE-RETKPALLTVHAP 36
++ E+ D+G Y C + +E++ +++ P
Sbjct: 60 ILPEIGPQDQGTYSCVATHSSHGPQESRAVSISIIEP 96
>3qr2_A Basigin; CD147, EMMPRIN, immunoglobulin-like domain, beta sheet,
STRU genomics, berkeley structural genomics center,
BSGC, cell A; 2.30A {Homo sapiens} PDB: 3qqn_A
Length = 137
Score = 85.5 bits (211), Expect = 6e-21
Identities = 25/120 (20%), Positives = 39/120 (32%), Gaps = 11/120 (9%)
Query: 32 TVHAPPSFVVRPQDQKVGLNGIASFQCVAEGSPLPSVFWTQEGSQVLMFPG--------- 82
FV P Q+ + G C A GSP+P + W EG
Sbjct: 17 RGSHMAGFVQAPLSQQRWVGGSVELHCEAVGSPVPEIQWWFEGQGPNDICSQLWDGARLD 76
Query: 83 --NAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVTSVEDTPPPIVQ 140
+ + H T+ I + +ED G + C A + + +V V +V
Sbjct: 77 RVHIHATYHQHAASTISIDTLVEEDTGTYECRASNDPDRNHLTRAPRVKWVRAQAVVLVL 136
Score = 58.1 bits (140), Expect = 7e-11
Identities = 17/90 (18%), Positives = 31/90 (34%), Gaps = 17/90 (18%)
Query: 127 QVTSVEDTPPPIVQVGPSNQTLPLHSVAFLPCQAVGSPPPHIRWYKNGNSLPPE------ 180
+ VQ P +Q + L C+AVGSP P I+W+ G
Sbjct: 13 GLVPRGSHMAGFVQ-APLSQQRWVGGSVELHCEAVGSPVPEIQWWFEGQGPNDICSQLWD 71
Query: 181 ---------DTRINVSSSGSLQI-DVLRDD 200
+ ++ ++ I ++ +D
Sbjct: 72 GARLDRVHIHATYHQHAASTISIDTLVEED 101
Score = 40.0 bits (93), Expect = 1e-04
Identities = 9/40 (22%), Positives = 12/40 (30%)
Query: 2 ITEVKKSDEGKYQCYVQNMVGERETKPALLTVHAPPSFVV 41
I + + D G Y+C N A VV
Sbjct: 94 IDTLVEEDTGTYECRASNDPDRNHLTRAPRVKWVRAQAVV 133
Score = 39.6 bits (92), Expect = 2e-04
Identities = 12/46 (26%), Positives = 17/46 (36%), Gaps = 1/46 (2%)
Query: 201 FRAEPKDTRVASGETALLECGPPKGQPEPTLHWKKNGQFIDLESSK 246
F P + G + L C G P P + W GQ + S+
Sbjct: 24 FVQAPLSQQRWVGGSVELHCE-AVGSPVPEIQWWFEGQGPNDICSQ 68
>3b5h_A Cervical EMMPRIN, HAB18G/CD147; IG-like domain, cell invasion;
2.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4
Length = 184
Score = 86.6 bits (214), Expect = 8e-21
Identities = 23/135 (17%), Positives = 37/135 (27%), Gaps = 10/135 (7%)
Query: 2 ITEVKKSDEGKYQCYVQNMVGERETKPALLTVHAPPSFVVRPQDQKVGLNGIASFQCVAE 61
G+Y C + +H PP + + A C +E
Sbjct: 53 FKVDSDDQWGEYSCVFLPEPMGTAN----IQLHGPPRVKAVKSSEHINEGETAMLVCKSE 108
Query: 62 GSPLP-SVFWTQEGSQVLMFPGNA----YGHLHVTQEGTLRIQGVQ-KEDAGFFVCSALS 115
P W + N + L I+ + + D G + C+ S
Sbjct: 109 SVPPVTDWAWYKITDSEDKALMNGSESRFFVSSSQGRSELHIENLNMEADPGQYRCNGTS 168
Query: 116 VAGSTTVRAFLQVTS 130
GS L+V S
Sbjct: 169 SKGSDQAIITLRVRS 183
Score = 76.2 bits (187), Expect = 6e-17
Identities = 28/152 (18%), Positives = 44/152 (28%), Gaps = 28/152 (18%)
Query: 54 ASFQCVAEGSPLP--SVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVC 111
C S W + G + + + G + C
Sbjct: 16 ILLTCSLNDSATEVTGHRWLKGGVVL---------KEDALPGQKTEFKVDSDDQWGEYSC 66
Query: 112 SALSVAGSTTVRAFLQVTSVEDTPPPIVQVGPSNQTLPLHSVAFLPCQAVGSPPP-HIRW 170
A +Q+ PP V+ S++ + A L C++ PP W
Sbjct: 67 VF---LPEPMGTANIQLH-----GPPRVKAVKSSEHINEGETAMLVCKSESVPPVTDWAW 118
Query: 171 YKNGNSLPPE-----DTRINVSSSG---SLQI 194
YK +S ++R VSSS L I
Sbjct: 119 YKITDSEDKALMNGSESRFFVSSSQGRSELHI 150
Score = 52.7 bits (126), Expect = 1e-08
Identities = 26/146 (17%), Positives = 34/146 (23%), Gaps = 43/146 (29%)
Query: 144 SNQTLPLHSVAFLPCQAVGSPPP--HIRWYKNGNSLPPEDTRINVSSSGSLQIDVLRDD- 200
L S L C S RW K G L + + V DD
Sbjct: 6 FTTVEDLGSKILLTCSLNDSATEVTGHRWLKGGVVLKEDAL-----PGQKTEFKVDSDDQ 60
Query: 201 -------------------------FRAEPKDTRVASGETALLEC---GPPKGQPEPTLH 232
+A + GETA+L C P P
Sbjct: 61 WGEYSCVFLPEPMGTANIQLHGPPRVKAVKSSEHINEGETAMLVCKSESVP---PVTDWA 117
Query: 233 WKK----NGQFIDLESSKRVSILGDP 254
W K + + S R +
Sbjct: 118 WYKITDSEDKALMNGSESRFFVSSSQ 143
>3r4d_A CEA-related cell adhesion molecule 1, isoform 1/2; immunoglobulin,
beta-sandwich, mceacam1A - immunoglobulin FO spike NTD -
galectin-like beta-sandwich fold; HET: NAG; 3.10A {Mus
musculus} PDB: 1l6z_A*
Length = 208
Score = 87.0 bits (215), Expect = 8e-21
Identities = 36/186 (19%), Positives = 61/186 (32%), Gaps = 29/186 (15%)
Query: 31 LTVHAPPSFVVRPQDQKVGLNGIASFQCVAEGSPLPSVFWTQEGSQVL------------ 78
+T+ A P V + L + W + + +
Sbjct: 2 VTIEAVPPQVAEDNN--------VLLLVHNLPLALGAFAWYKGNTTAIDKEIARFVPNSN 53
Query: 79 -MFPGNAY-GHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVTSVEDTPP 136
F G AY G + G+L Q + +D G + T V P
Sbjct: 54 MNFTGQAYSGREIIYSNGSLLFQMITMKDMGVYTLDMTDENYRRTQA---TVRFHVHQPV 110
Query: 137 PIVQVGPSNQTLPLHSVAFLPCQAVGSPPPHIRWYKNGNSLPPEDTRINVSSSGS-LQID 195
+ +N T+ L C + +I+W N SL + R+ +S + S L+ID
Sbjct: 111 TQPFLQVTNTTVKELDSVTLTCLS-NDIGANIQWLFNSQSLQLTE-RMTLSQNNSILRID 168
Query: 196 -VLRDD 200
+ R+D
Sbjct: 169 PIKRED 174
Score = 79.3 bits (195), Expect = 6e-18
Identities = 19/144 (13%), Positives = 43/144 (29%), Gaps = 13/144 (9%)
Query: 1 MITEVKKSDEGKYQCYVQNMVGERETKPALLTV-HAPPSFVVRPQDQKVGLNGIASFQCV 59
+ + D G Y + + R V ++ + V + C+
Sbjct: 74 LFQMITMKDMGVYTLDMTDENYRRTQATVRFHVHQPVTQPFLQVTNTTVKELDSVTLTCL 133
Query: 60 AEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEG-TLRIQGVQKEDAGFFVCSALSVAG 118
+ ++ W + + + ++Q LRI +++EDAG + C +
Sbjct: 134 SNDIG-ANIQWLFNSQSLQLTE-----RMTLSQNNSILRIDPIKREDAGEYQCEISNPVS 187
Query: 119 STTVRAF-LQVTSVEDTPPPIVQV 141
+ L + P
Sbjct: 188 VRRSNSIKLDIIF----DPHHHHH 207
Score = 54.3 bits (130), Expect = 5e-09
Identities = 24/176 (13%), Positives = 47/176 (26%), Gaps = 64/176 (36%)
Query: 127 QVTSVEDTPPPIVQVGPSNQTLPLHSVAFLPCQAVGSPPPHIRWYKNGNSLPPEDT---- 182
+VT +E PP + + L + WYK + ++
Sbjct: 1 EVT-IEAVPPQVA-EDNN---------VLLLVHNLPLALGAFAWYKGNTTAIDKEIARFV 49
Query: 183 --------------RINVSSSGSLQI-DVLRDD--------------------------- 200
R + S+GSL + D
Sbjct: 50 PNSNMNFTGQAYSGREIIYSNGSLLFQMITMKDMGVYTLDMTDENYRRTQATVRFHVHQP 109
Query: 201 ---FRAEPKDTRVASGETALLECGPPKGQPEPTLHWKKNGQFIDLESSKRVSILGD 253
+ +T V ++ L C + W N Q L+ ++R+++ +
Sbjct: 110 VTQPFLQVTNTTVKELDSVTLTCLS--NDIGANIQWLFNSQ--SLQLTERMTLSQN 161
>1u2h_A APEG-1, aortic preferentially expressed protein 1; structural
genomics, IG-fold I-SET, RGD motif, homophilic adhesion,
arterial smooth muscle cells; 0.96A {Homo sapiens}
Length = 99
Score = 83.9 bits (208), Expect = 8e-21
Identities = 29/97 (29%), Positives = 39/97 (40%), Gaps = 7/97 (7%)
Query: 35 APPSFVVRPQDQKVGLNGIASFQCVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEG 94
APP+F V DQ V +G P P V W + V EG
Sbjct: 4 APPTFKVSLMDQSVREGQDVIMSIRVQGEPKPVVSWLRNRQPVRPDQ----RRFAEEAEG 59
Query: 95 ---TLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQV 128
LRI ++ DAGF+ C A++ G+ A L+V
Sbjct: 60 GLCRLRILAAERGDAGFYTCKAVNEYGARQCEARLEV 96
Score = 64.2 bits (157), Expect = 2e-13
Identities = 16/69 (23%), Positives = 28/69 (40%), Gaps = 4/69 (5%)
Query: 136 PPIVQVGPSNQTLPLHSVAFLPCQAVGSPPPHIRWYKNGNSLPPEDTRINVSSSG---SL 192
PP +V +Q++ + + G P P + W +N + P+ R + G L
Sbjct: 5 PPTFKVSLMDQSVREGQDVIMSIRVQGEPKPVVSWLRNRQPVRPDQRRFAEEAEGGLCRL 64
Query: 193 QI-DVLRDD 200
+I R D
Sbjct: 65 RILAAERGD 73
Score = 48.0 bits (115), Expect = 1e-07
Identities = 11/53 (20%), Positives = 24/53 (45%), Gaps = 2/53 (3%)
Query: 201 FRAEPKDTRVASGETALLECGPPKGQPEPTLHWKKNGQFIDLESSKRVSILGD 253
F+ D V G+ ++ +G+P+P + W +N Q + +R + +
Sbjct: 8 FKVSLMDQSVREGQDVIMSI-RVQGEPKPVVSWLRNRQPVR-PDQRRFAEEAE 58
Score = 38.8 bits (91), Expect = 2e-04
Identities = 11/35 (31%), Positives = 15/35 (42%), Gaps = 1/35 (2%)
Query: 1 MITEVKKSDEGKYQCYVQNMVGERETKPALLTVHA 35
I ++ D G Y C N G R+ + A L V
Sbjct: 65 RILAAERGDAGFYTCKAVNEYGARQCE-ARLEVRG 98
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA,
receptor-ligand complex transferase; HET: NAG NDG MAN
BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Length = 347
Score = 89.4 bits (221), Expect = 1e-20
Identities = 27/174 (15%), Positives = 44/174 (25%), Gaps = 22/174 (12%)
Query: 37 PSFVVRPQDQKVGLNGIASFQCVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTL 96
P+ V+ + V + +C EG L W + + G
Sbjct: 159 PTLKVQVPNASVDVGDDVLLRCQVEGRGLEQAGWILTELEQ---SATVMKSGGLPSLGLT 215
Query: 97 RIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVTSVEDTPPPIVQVGPSNQTLPLHSVAFL 156
+ C A + G V + V+ T +
Sbjct: 216 LANVTSDLNRKNVTCWAENDVGRAEVSVQVNVS---------FPASVQLHTAVEMHHWCI 266
Query: 157 PCQAVGSPPPHIRWYKNGNSLPP---------EDTRINVSSSGSLQI-DVLRDD 200
P G P P +RW NG+ L E G L++ +
Sbjct: 267 PFSVDGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETVRHGCLRLNQPTHVN 320
Score = 89.4 bits (221), Expect = 1e-20
Identities = 22/134 (16%), Positives = 36/134 (26%), Gaps = 10/134 (7%)
Query: 1 MITEVKKSDEGKYQCYVQNMVGERETKPALLTVHAPPSFVVRPQDQKVGLNGIASFQCVA 60
+ + C+ +N VG E +V SF Q
Sbjct: 216 LANVTSDLNRKNVTCWAENDVGRAEV-----SVQVNVSFPASVQLHTAVEMHHWCIPFSV 270
Query: 61 EGSPLPSVFWTQEGSQVLMFP-----GNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALS 115
+G P PS+ W GS + + G LR+ + G + A +
Sbjct: 271 DGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETVRHGCLRLNQPTHVNNGNYTLLAAN 330
Query: 116 VAGSTTVRAFLQVT 129
G +
Sbjct: 331 PFGQASASIMAAFM 344
Score = 67.8 bits (165), Expect = 3e-13
Identities = 28/177 (15%), Positives = 48/177 (27%), Gaps = 31/177 (17%)
Query: 135 PPPIVQVGPSNQTLPLHSVAFLPCQAVGSPPPHIRWYKNGNSLPPEDTRINVSSSGSLQI 194
P ++V N ++ + L CQ G W + S L +
Sbjct: 157 GVPTLKVQVPNASVDVGDDVLLRCQVEGRGLEQAGWILTELEQSATVMKSGGLPSLGLTL 216
Query: 195 -DVLRDD-------------------------FRAEPKDTRVASGETALLECGPPKGQPE 228
+V D F A + + GQP
Sbjct: 217 ANVTSDLNRKNVTCWAENDVGRAEVSVQVNVSFPASVQLHTAVEMHHWCIPF-SVDGQPA 275
Query: 229 PTLHWKKNGQFIDLESSKRVSILGDPWFDSRRSRSIFGSVLGALSDD--QWKLIAKN 283
P+L W NG ++ S L ++ R + + + + L+A N
Sbjct: 276 PSLRWLFNGSVLNETSFIFTEFLEPAANETVRHGCLR--LNQPTHVNNGNYTLLAAN 330
>2kdg_A Myotilin; immonoglobulin domain, actin-binding, structural protein,
cell membrane, cytoplasm, cytoskeleton, disease
mutation, immunoglobulin domain; NMR {Homo sapiens}
Length = 100
Score = 83.1 bits (206), Expect = 2e-20
Identities = 26/100 (26%), Positives = 41/100 (41%), Gaps = 5/100 (5%)
Query: 35 APPSFVVRPQDQKVGLNGIASFQCVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEG 94
PP F+ P++ + G P P V W G V + + V+++G
Sbjct: 4 GPPRFIQVPENMSIDEGRFCRMDFKVSGLPAPDVSWYLNGRTV---QSDDLHKMIVSEKG 60
Query: 95 --TLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVTSVE 132
+L + V+ DAG + C A + AG T L V + E
Sbjct: 61 LHSLIFEVVRASDAGAYACVAKNRAGEATFTVQLDVLAKE 100
Score = 63.5 bits (155), Expect = 4e-13
Identities = 21/70 (30%), Positives = 32/70 (45%), Gaps = 5/70 (7%)
Query: 135 PPPIVQVGPSNQTLPLHSVAFLPCQAVGSPPPHIRWYKNGNSLPPEDT-RINVSSSG--S 191
PP +QV P N ++ + + G P P + WY NG ++ +D ++ VS G S
Sbjct: 5 PPRFIQV-PENMSIDEGRFCRMDFKVSGLPAPDVSWYLNGRTVQSDDLHKMIVSEKGLHS 63
Query: 192 LQI-DVLRDD 200
L V D
Sbjct: 64 LIFEVVRASD 73
Score = 46.5 bits (111), Expect = 4e-07
Identities = 11/56 (19%), Positives = 22/56 (39%), Gaps = 7/56 (12%)
Query: 201 FRAEPKDTRVASGETALLECGPPK--GQPEPTLHWKKNGQFIDLESSKRVSILGDP 254
F P++ + G ++ K G P P + W NG+ ++S ++
Sbjct: 8 FIQVPENMSIDEGRFCRMDF---KVSGLPAPDVSWYLNGR--TVQSDDLHKMIVSE 58
Score = 39.6 bits (93), Expect = 1e-04
Identities = 12/35 (34%), Positives = 15/35 (42%), Gaps = 1/35 (2%)
Query: 1 MITEVKKSDEGKYQCYVQNMVGERETKPALLTVHA 35
+ V+ SD G Y C +N GE L V A
Sbjct: 65 IFEVVRASDAGAYACVAKNRAGEATFT-VQLDVLA 98
>1nct_A Titin; cell adhesion, glycoprotein, transmembrane, repeat, brain,
immunoglobulin fold, alternative splicing, signal,
muscle protein; NMR {Homo sapiens} SCOP: b.1.1.4 PDB:
1ncu_A 1tnm_A 1tnn_A
Length = 106
Score = 83.2 bits (206), Expect = 2e-20
Identities = 19/96 (19%), Positives = 33/96 (34%), Gaps = 2/96 (2%)
Query: 33 VHAPPSFVVRPQDQKVGLNGIASFQCVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQ 92
+ +P+ V A F C +G P+P+V W ++G + +
Sbjct: 11 TTLAARILTKPRSMTVYEGESARFSCDTDGEPVPTVTWLRKGQVL--STSARHQVTTTKY 68
Query: 93 EGTLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQV 128
+ T I VQ D G + + G L +
Sbjct: 69 KSTFEISSVQASDEGNYSVVVENSEGKQEAEFTLTI 104
Score = 62.8 bits (153), Expect = 6e-13
Identities = 17/80 (21%), Positives = 28/80 (35%), Gaps = 5/80 (6%)
Query: 125 FLQVTSVEDTPPPIVQVGPSNQTLPLHSVAFLPCQAVGSPPPHIRWYKNGNSLPPEDTRI 184
S + T + P + T+ A C G P P + W + G L R
Sbjct: 3 HHHHHSSKTTLAARILTKPRSMTVYEGESARFSCDTDGEPVPTVTWLRKGQVLST-SARH 61
Query: 185 NVSSSG---SLQI-DVLRDD 200
V+++ + +I V D
Sbjct: 62 QVTTTKYKSTFEISSVQASD 81
Score = 49.3 bits (118), Expect = 5e-08
Identities = 16/54 (29%), Positives = 24/54 (44%), Gaps = 3/54 (5%)
Query: 201 FRAEPKDTRVASGETALLECGPPKGQPEPTLHWKKNGQFIDLESSKRVSILGDP 254
+P+ V GE+A C G+P PT+ W + GQ L +S R +
Sbjct: 17 ILTKPRSMTVYEGESARFSC-DTDGEPVPTVTWLRKGQ--VLSTSARHQVTTTK 67
Score = 41.6 bits (98), Expect = 2e-05
Identities = 13/33 (39%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
Query: 2 ITEVKKSDEGKYQCYVQNMVGERETKPALLTVH 34
I+ V+ SDEG Y V+N G++E + LT+
Sbjct: 74 ISSVQASDEGNYSVVVENSEGKQEAE-FTLTIQ 105
>2dm3_A KIAA0992 protein, palladin; beta-sandwich, myopalladin,
actin-associated scaffold, structural genomics, NPPSFA;
NMR {Homo sapiens}
Length = 110
Score = 82.8 bits (205), Expect = 3e-20
Identities = 30/107 (28%), Positives = 45/107 (42%), Gaps = 5/107 (4%)
Query: 32 TVHAPPSFVVRPQDQKVGLNGIASFQCVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVT 91
+ P F+ P D V + C G P P + W +G V P +A+ + V
Sbjct: 5 SSGFRPHFLQAPGDLTVQEGKLCRMDCKVSGLPTPDLSWQLDGKPV--RPDSAH-KMLVR 61
Query: 92 QEG--TLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVTSVEDTPP 136
+ G +L I+ V DAG + C A + AG + L V + E P
Sbjct: 62 ENGVHSLIIEPVTSRDAGIYTCIATNRAGQNSFSLELVVAAKESGPS 108
Score = 60.5 bits (147), Expect = 5e-12
Identities = 18/76 (23%), Positives = 32/76 (42%), Gaps = 5/76 (6%)
Query: 129 TSVEDTPPPIVQVGPSNQTLPLHSVAFLPCQAVGSPPPHIRWYKNGNSLPPEDT-RINVS 187
+ P +Q P + T+ + + C+ G P P + W +G + P+ ++ V
Sbjct: 3 SGSSGFRPHFLQA-PGDLTVQEGKLCRMDCKVSGLPTPDLSWQLDGKPVRPDSAHKMLVR 61
Query: 188 SSG--SLQI-DVLRDD 200
+G SL I V D
Sbjct: 62 ENGVHSLIIEPVTSRD 77
Score = 46.6 bits (111), Expect = 5e-07
Identities = 13/54 (24%), Positives = 21/54 (38%), Gaps = 3/54 (5%)
Query: 201 FRAEPKDTRVASGETALLECGPPKGQPEPTLHWKKNGQFIDLESSKRVSILGDP 254
F P D V G+ ++C G P P L W+ +G+ + +L
Sbjct: 12 FLQAPGDLTVQEGKLCRMDC-KVSGLPTPDLSWQLDGK--PVRPDSAHKMLVRE 62
Score = 44.3 bits (105), Expect = 3e-06
Identities = 12/38 (31%), Positives = 14/38 (36%), Gaps = 1/38 (2%)
Query: 1 MITEVKKSDEGKYQCYVQNMVGERETKPALLTVHAPPS 38
+I V D G Y C N G+ L V A S
Sbjct: 69 IIEPVTSRDAGIYTCIATNRAGQNSFS-LELVVAAKES 105
>2ny1_B T-cell surface glycoprotein CD4; HIV, GP120, CD4, viral
protein-immune system compl; HET: NAG SUC; 1.99A {Homo
sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 2nxz_B* 2ny0_B*
2nxy_B* 2ny2_B* 2ny3_B* 2ny4_B* 2ny5_C* 2ny6_B* 3jwd_C*
3jwo_C* 1g9m_C* 1g9n_C* 1gc1_C* 1rzj_C* 1rzk_C* 3o2d_A
3cd4_A 3lqa_C* 2b4c_C* 2qad_B* ...
Length = 184
Score = 83.9 bits (207), Expect = 8e-20
Identities = 18/130 (13%), Positives = 39/130 (30%), Gaps = 21/130 (16%)
Query: 1 MITEVKKSDEGKYQCYVQNMVGERETKPALLTVHAPPSFVVRPQDQKVGLNGIASFQCVA 60
+I +K D Y C V++ E + + A + + +
Sbjct: 71 IIKNLKIEDSDTYICEVEDQKEEVQLLV--FGLTANSDTHLLQGQS-------LTLTLES 121
Query: 61 EGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGST 120
PSV + + TL + ++ +D+G + C+ L
Sbjct: 122 PPGSSPSVQCRSPRGKN------------IQGGKTLSVSQLELQDSGTWTCTVLQNQKKV 169
Query: 121 TVRAFLQVTS 130
+ + V +
Sbjct: 170 EFKIDIVVLA 179
Score = 79.3 bits (195), Expect = 4e-18
Identities = 18/163 (11%), Positives = 38/163 (23%), Gaps = 37/163 (22%)
Query: 54 ASFQCVAEGSPLPSVFWTQEGSQVLMFPGNAYGH---------------LHVTQEGTLRI 98
C A W ++ ++ L L I
Sbjct: 13 VELTCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQGNFPLII 72
Query: 99 QGVQKEDAGFFVCSALSVAGSTTVRAFLQVTSVEDTPPPIVQVGPSNQTLPLHSVAFLPC 158
+ ++ ED+ ++C L V + + G S L
Sbjct: 73 KNLKIEDSDTYICEVEDQKEEVQ----LLVFGLTANSDTHLLQGQS---------LTLTL 119
Query: 159 QAVGSPPPHIRWYKNGNSLPPEDTRINVSSSGSLQI-DVLRDD 200
++ P ++ N+ +L + + D
Sbjct: 120 ESPPGSSPSVQCRSPRGK--------NIQGGKTLSVSQLELQD 154
Score = 51.1 bits (122), Expect = 5e-08
Identities = 17/137 (12%), Positives = 35/137 (25%), Gaps = 42/137 (30%)
Query: 154 AFLPCQAVGSPPPHIRWYKNGNSL-----------------PPEDTRINV--SSSGSLQI 194
L C A W + D+R ++ + L I
Sbjct: 13 VELTCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQGNFPLII 72
Query: 195 -DVLRDDF-----RAE---------------PKDTRVASGETALLECGPPKGQPEPTLHW 233
++ +D E DT + G++ L P++
Sbjct: 73 KNLKIEDSDTYICEVEDQKEEVQLLVFGLTANSDTHLLQGQSLTLTL-ESPPGSSPSVQC 131
Query: 234 KKNGQFIDLESSKRVSI 250
+ ++ K +S+
Sbjct: 132 RSPRGKN-IQGGKTLSV 147
Score = 42.3 bits (99), Expect = 5e-05
Identities = 16/73 (21%), Positives = 24/73 (32%), Gaps = 6/73 (8%)
Query: 213 GETALLECGPPKGQPEPTLHWKKNGQFIDLESSKRVSILGDPWFDSRRSRSIFGSVLGAL 272
G+T L C + HWK + Q L + G + R S
Sbjct: 10 GDTVELTCTAS-QKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRAD-----SRRSLW 63
Query: 273 SDDQWKLIAKNIR 285
+ LI KN++
Sbjct: 64 DQGNFPLIIKNLK 76
Score = 35.0 bits (80), Expect = 0.016
Identities = 7/38 (18%), Positives = 16/38 (42%), Gaps = 2/38 (5%)
Query: 2 ITEVKKSDEGKYQCYVQNMVGERETKPALLTVHA-PPS 38
+++++ D G + C V + E + V A +
Sbjct: 147 VSQLELQDSGTWTCTVLQNQKKVE-FKIDIVVLAFQKA 183
>3shs_A HOC head outer capsid protein; immunoglobulin-like domain, phage
capsid decorative protein, interaction with bacteria;
1.95A {Enterobacteria phage RB49}
Length = 304
Score = 86.4 bits (213), Expect = 9e-20
Identities = 27/222 (12%), Positives = 59/222 (26%), Gaps = 31/222 (13%)
Query: 2 ITEVKKSDEGKYQCYVQNMVGERETKPALLTVH--APPSFVVRPQDQKVGLNGIASFQCV 59
+ + + G Y+ VQ+ + + + + PQ V
Sbjct: 56 VADATSENAGSYKVTVQDTDTMTSVESEVFLMEEAELIVNITEPQHFYVSSQTDVELHAT 115
Query: 60 AEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGS 119
+ S + E + + + IQ + G + +
Sbjct: 116 VKFSGGKTPADNYELHYSWSKGEDV-----IDTTQDITIQEFTADKNGVYTVKVWGESED 170
Query: 120 TTVRAFLQVTSVEDTPPPIVQVGPSNQTLPLHSVAFLPCQ--------AVGSPPPHIR-- 169
+ A ++ + Q ++T+ L + L + G P I+
Sbjct: 171 SAASASTKIMLA---TMNVDQDVVESKTVALGNEISLNYVVSEDIVGDSSGMPNLTIKYN 227
Query: 170 WYKN----------GNSLPPEDTRINVSSSGSLQI-DVLRDD 200
WY G+ + +++ G L DD
Sbjct: 228 WYLQREGQLSPTLIGSEVGEALEGFSITPDGHLFKESATYDD 269
Score = 81.4 bits (200), Expect = 4e-18
Identities = 29/156 (18%), Positives = 51/156 (32%), Gaps = 29/156 (18%)
Query: 2 ITEVKKSDEGKYQCYVQNMVGERETKPALLTVHAPPSFVVRPQ--------DQKVGLNGI 53
I E G Y V + A + V + ++ LN +
Sbjct: 149 IQEFTADKNGVYTVKVWGESEDSAAS-ASTKIMLATMNVDQDVVESKTVALGNEISLNYV 207
Query: 54 ASFQCVAEGSPLPSV------FWTQEGSQVLMFPGNAYGH----LHVTQEGTLRIQGVQK 103
S V + S +P++ + +EG G+ G +T +G L +
Sbjct: 208 VSEDIVGDSSGMPNLTIKYNWYLQREGQLSPTLIGSEVGEALEGFSITPDGHLFKESATY 267
Query: 104 EDAGFFVCSA----------LSVAGSTTVRAFLQVT 129
+D F C A + VA ST+ + ++V
Sbjct: 268 DDTAKFWCVAKLYQQIEDETVEVAASTSRKCSMEVV 303
Score = 68.3 bits (166), Expect = 2e-13
Identities = 37/259 (14%), Positives = 74/259 (28%), Gaps = 59/259 (22%)
Query: 36 PPSFVVRPQDQKVGLNGIASFQCVAEGS-PLPSVF---WTQEGSQVLMFPGNAYGHLHVT 91
+ ++ + + G PLPS WT++
Sbjct: 2 AFTVSIQSNKRCFLAGDGFTLTATVAGDEPLPSNLTYTWTKDDQPH------------EN 49
Query: 92 QEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVTSVEDTPPPIVQVGPSNQTLPLH 151
TL + E+AG + + T+V + +V +E+ + P + +
Sbjct: 50 NTATLTVADATSENAGSYKVTVQDTDTMTSVES--EVFLMEEAELIVNITEPQHFYVSSQ 107
Query: 152 SVAFLPC---QAVGSPPP-----HIRWYKNGNSLP-----------PEDTRI-------- 184
+ L + G P H W K + + + +
Sbjct: 108 TDVELHATVKFSGGKTPADNYELHYSWSKGEDVIDTTQDITIQEFTADKNGVYTVKVWGE 167
Query: 185 --NVSSSGSLQIDVL-RDDFRAEPKDTRVASGETALLEC-------GPPKGQPEPTLHW- 233
+ ++S S +I + + + + VA G L G G P T+ +
Sbjct: 168 SEDSAASASTKIMLATMNVDQDVVESKTVALGNEISLNYVVSEDIVGDSSGMPNLTIKYN 227
Query: 234 ---KKNGQFIDLESSKRVS 249
++ GQ V
Sbjct: 228 WYLQREGQLSPTLIGSEVG 246
>2dm2_A Palladin; beta-sandwich, KIAA0992, actin-associated scaffold,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 110
Score = 80.9 bits (200), Expect = 2e-19
Identities = 22/104 (21%), Positives = 43/104 (41%), Gaps = 4/104 (3%)
Query: 35 APPSFVVRPQDQKVGLNGIASFQCVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEG 94
P F ++ + K+ +F C G+P P ++W ++G Q+ P + + + +G
Sbjct: 7 GAPFFEMKLKHYKIFEGMPVTFTCRVAGNPKPKIYWFKDGKQIS--PKSDHYTIQRDLDG 64
Query: 95 --TLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVTSVEDTPP 136
+L +D G + A + G + L V +V P
Sbjct: 65 TCSLHTTASTLDDDGNYTIMAANPQGRISCTGRLMVQAVNSGPS 108
Score = 57.0 bits (138), Expect = 8e-11
Identities = 15/77 (19%), Positives = 25/77 (32%), Gaps = 6/77 (7%)
Query: 129 TSVEDTPPPIVQVGPSNQTLPLHSVAFLPCQAVGSPPPHIRWYKNGNSLPPEDTRINVSS 188
+S P + + C+ G+P P I W+K+G + P+ +
Sbjct: 2 SSGSSGAPFFEM-KLKHYKIFEGMPVTFTCRVAGNPKPKIYWFKDGKQISPKSDHYTIQR 60
Query: 189 SG----SLQI-DVLRDD 200
SL DD
Sbjct: 61 DLDGTCSLHTTASTLDD 77
Score = 47.7 bits (114), Expect = 2e-07
Identities = 14/54 (25%), Positives = 23/54 (42%), Gaps = 2/54 (3%)
Query: 201 FRAEPKDTRVASGETALLECGPPKGQPEPTLHWKKNGQFIDLESSKRVSILGDP 254
F + K ++ G C G P+P ++W K+G+ I S +I D
Sbjct: 11 FEMKLKHYKIFEGMPVTFTC-RVAGNPKPKIYWFKDGKQIS-PKSDHYTIQRDL 62
Score = 42.3 bits (100), Expect = 2e-05
Identities = 10/37 (27%), Positives = 11/37 (29%), Gaps = 1/37 (2%)
Query: 2 ITEVKKSDEGKYQCYVQNMVGERETKPALLTVHAPPS 38
T D+G Y N G L V A S
Sbjct: 70 TTASTLDDDGNYTIMAANPQGRISCT-GRLMVQAVNS 105
>3sbw_C Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-H1, programmed
death-1 ligand 1, complex, costimulatory, immune system;
2.28A {Homo sapiens} PDB: 3fn3_A 3bis_A 3bik_A
Length = 222
Score = 82.4 bits (203), Expect = 6e-19
Identities = 33/150 (22%), Positives = 52/150 (34%), Gaps = 13/150 (8%)
Query: 1 MITEVKKSDEGKYQCYVQNMVGERETKPALLTVHAPPSFVVRPQDQKVGLNGIASFQCVA 60
IT+VK D G Y+C + G + K + V+AP + + + + C A
Sbjct: 83 QITDVKLQDAGVYRCMISY--GGADYKRITVKVNAPYNKINQRILVVDPVTSEHELTCQA 140
Query: 61 EGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQG---VQKEDAGFFVCSALSVA 117
EG P V WT QVL G +E + + F C+ +
Sbjct: 141 EGYPKAEVIWTSSDHQVL--SGKTTTTNSKREEKLFNVTSTLRINTTTNEIFYCTFRRLD 198
Query: 118 GSTTVRAFLQVTSVEDTPPPIVQVGPSNQT 147
A L + P+ P+ +T
Sbjct: 199 PEENHTAELVIPE-----LPLAHP-PNERT 222
Score = 68.1 bits (166), Expect = 9e-14
Identities = 33/179 (18%), Positives = 54/179 (30%), Gaps = 33/179 (18%)
Query: 30 LLTVHAPPSFVVRPQDQKVGLNGIASFQCVAEGSPLPS-----VFWTQEGSQVLMFPGNA 84
+ TV P V V + +C V+W E ++ F
Sbjct: 1 MFTVTVPKDLYV------VEYGSNMTIECKFPVEKQLDLAALIVYWEMEDKNIIQFVHGE 54
Query: 85 YGHLHVTQE----------------GTLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQV 128
L+I V+ +DAG + C S G+ R ++V
Sbjct: 55 EDLKVQHSSYRQRARLLKDQLSLGNAALQITDVKLQDAGVYRCMI-SYGGADYKRITVKV 113
Query: 129 TSVEDTPPPIVQVGPSNQTLPLHSVAFLPCQAVGSPPPHIRWYKNGNSLPPEDTRINVS 187
+ + + V P+ S L CQA G P + W + + + T S
Sbjct: 114 NAPYNKINQRILV-----VDPVTSEHELTCQAEGYPKAEVIWTSSDHQVLSGKTTTTNS 167
Score = 26.9 bits (59), Expect = 7.2
Identities = 17/152 (11%), Positives = 31/152 (20%), Gaps = 54/152 (35%)
Query: 139 VQVGPSNQTLPLHSVAFLPCQAVGSPPP---HIRW-----------YKNGNSLPPEDT-- 182
V V + S + C+ + + +G
Sbjct: 4 VTVPKDLYVVEYGSNMTIECKFPVEKQLDLAALIVYWEMEDKNIIQFVHGEEDLKVQHSS 63
Query: 183 ---RINVSS------SGSLQI-DVLRDD---------------------------FRAEP 205
R + + +LQI DV D +
Sbjct: 64 YRQRARLLKDQLSLGNAALQITDVKLQDAGVYRCMISYGGADYKRITVKVNAPYNKINQR 123
Query: 206 KDTRVASGETALLECGPPKGQPEPTLHWKKNG 237
L C +G P+ + W +
Sbjct: 124 ILVVDPVTSEHELTCQA-EGYPKAEVIWTSSD 154
>3qp3_A Titin; I-SET IG-like, sarcomere, M-BAND, transferase; 2.00A {Homo
sapiens}
Length = 103
Score = 78.1 bits (193), Expect = 1e-18
Identities = 21/105 (20%), Positives = 35/105 (33%), Gaps = 8/105 (7%)
Query: 31 LTVHAPPSFVVRPQDQKVGLNGIASFQCVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHV 90
T+ P +R + +V F + P V W G ++ +H
Sbjct: 3 FTLDHAPRITLRMRSHRVPCGQNTRFILNVQSKPTAEVKWYHNGVEL-----QESSKIHY 57
Query: 91 TQEG---TLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVTSVE 132
T TL I +D+G + + G + A L VT +
Sbjct: 58 TNTSGVLTLEILDCHTDDSGTYRAVCTNYKGEASDYATLDVTGGD 102
Score = 54.6 bits (132), Expect = 5e-10
Identities = 15/69 (21%), Positives = 29/69 (42%), Gaps = 5/69 (7%)
Query: 136 PPIVQVGPSNQTLPLHSVAFLPCQAVGSPPPHIRWYKNGNSLPPEDTRINVSSSG---SL 192
P + + + +P P ++WY NG L E ++I+ +++ +L
Sbjct: 8 APRITLRMRSHRVPCGQNTRFILNVQSKPTAEVKWYHNGVEL-QESSKIHYTNTSGVLTL 66
Query: 193 QI-DVLRDD 200
+I D DD
Sbjct: 67 EILDCHTDD 75
Score = 43.4 bits (103), Expect = 5e-06
Identities = 9/53 (16%), Positives = 18/53 (33%), Gaps = 3/53 (5%)
Query: 201 FRAEPKDTRVASGETALLECGPPKGQPEPTLHWKKNGQFIDLESSKRVSILGD 253
+ RV G+ + +P + W NG +L+ S ++
Sbjct: 11 ITLRMRSHRVPCGQNTRFIL-NVQSKPTAEVKWYHNGV--ELQESSKIHYTNT 60
Score = 38.8 bits (91), Expect = 2e-04
Identities = 10/35 (28%), Positives = 12/35 (34%), Gaps = 1/35 (2%)
Query: 2 ITEVKKSDEGKYQCYVQNMVGERETKPALLTVHAP 36
I + D G Y+ N GE A L V
Sbjct: 68 ILDCHTDDSGTYRAVCTNYKGEASDY-ATLDVTGG 101
>1g1c_A Immunoglobulin-like domain I1 from titin; immunoglobulin domain,
beta-sandwhich, I-SET, structural protein; 2.10A {Homo
sapiens} SCOP: b.1.1.4
Length = 99
Score = 76.2 bits (188), Expect = 7e-18
Identities = 26/99 (26%), Positives = 40/99 (40%), Gaps = 9/99 (9%)
Query: 36 PPSFVVRPQDQKVGLNGIASFQCVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEG- 94
P R Q Q VG A F+ G P P W + G ++ ++
Sbjct: 5 APKIFERIQSQTVGQGSDAHFRVRVVGKPDPECEWYKNGVKI-----ERSDRIYWYWPED 59
Query: 95 ---TLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVTS 130
L I+ V ED+ + A+++AG T+ AFL V +
Sbjct: 60 NVCELVIRDVTGEDSASIMVKAINIAGETSSHAFLLVQA 98
Score = 53.8 bits (130), Expect = 1e-09
Identities = 19/69 (27%), Positives = 26/69 (37%), Gaps = 4/69 (5%)
Query: 136 PPIVQVGPSNQTLPLHSVAFLPCQAVGSPPPHIRWYKNGNSLPP-EDTRINVSSSG--SL 192
P + +QT+ S A + VG P P WYKNG + + L
Sbjct: 5 APKIFERIQSQTVGQGSDAHFRVRVVGKPDPECEWYKNGVKIERSDRIYWYWPEDNVCEL 64
Query: 193 QI-DVLRDD 200
I DV +D
Sbjct: 65 VIRDVTGED 73
Score = 43.8 bits (104), Expect = 3e-06
Identities = 13/54 (24%), Positives = 18/54 (33%), Gaps = 3/54 (5%)
Query: 201 FRAEPKDTRVASGETALLECGPPKGQPEPTLHWKKNGQFIDLESSKRVSILGDP 254
+ V G A G+P+P W KNG +E S R+
Sbjct: 8 IFERIQSQTVGQGSDAHFRV-RVVGKPDPECEWYKNGV--KIERSDRIYWYWPE 58
Score = 37.6 bits (88), Expect = 6e-04
Identities = 10/34 (29%), Positives = 13/34 (38%), Gaps = 1/34 (2%)
Query: 2 ITEVKKSDEGKYQCYVQNMVGERETKPALLTVHA 35
I +V D N+ GE + A L V A
Sbjct: 66 IRDVTGEDSASIMVKAINIAGETSSH-AFLLVQA 98
>2cry_A KIN of IRRE-like protein 3; IG fold, KIN of irregular chiasm-like
protein 3, nephrin- like 2, structural genomics, NPPSFA;
NMR {Homo sapiens} SCOP: b.1.1.1
Length = 122
Score = 76.5 bits (188), Expect = 1e-17
Identities = 25/118 (21%), Positives = 42/118 (35%), Gaps = 7/118 (5%)
Query: 26 TKPALLTVHAPPSFVVRPQDQKVGLNGIASFQCVAEGSPLP-SVFWTQEGSQVLMFPGNA 84
LTV+ PP Q Q +C +P P + W+ + + +
Sbjct: 4 GSSGTLTVNGPPIIS-STQTQHALHGEKGQIKCFIRSTPPPDRIAWSWKENVLESGTSGR 62
Query: 85 YGHLHVTQEG----TLRIQGVQKED-AGFFVCSALSVAGSTTVRAFLQVTSVEDTPPP 137
Y ++ E TL I + + D + C+A + GS T L+ E + P
Sbjct: 63 YTVETISTEEGVISTLTISNIVRADFQTIYNCTAWNSFGSDTEIIRLKEQGSEMSGPS 120
Score = 50.7 bits (121), Expect = 2e-08
Identities = 23/97 (23%), Positives = 34/97 (35%), Gaps = 16/97 (16%)
Query: 118 GSTTVRAFLQVTSVEDTPPPIVQVGPSNQTLPLHSVAFLPCQAVGSPPP-HIRWYKNGNS 176
GS+ L V PPI+ Q + C +PPP I W N
Sbjct: 1 GSSGSSGTLTVNG-----PPIISS-TQTQHALHGEKGQIKCFIRSTPPPDRIAWSWKENV 54
Query: 177 LPPEDT-RINVSSS-------GSLQI-DVLRDDFRAE 204
L + R V + +L I +++R DF+
Sbjct: 55 LESGTSGRYTVETISTEEGVISTLTISNIVRADFQTI 91
Score = 41.8 bits (98), Expect = 3e-05
Identities = 13/76 (17%), Positives = 26/76 (34%), Gaps = 2/76 (2%)
Query: 187 SSSGSLQIDVLRDDFRAEPKDTRVASGETALLECGPPKGQPEP-TLHWKKNGQFIDLESS 245
SS S + V + + GE ++C + P P + W ++ +S
Sbjct: 2 SSGSSGTLTVNGPPIISSTQTQHALHGEKGQIKC-FIRSTPPPDRIAWSWKENVLESGTS 60
Query: 246 KRVSILGDPWFDSRRS 261
R ++ + S
Sbjct: 61 GRYTVETISTEEGVIS 76
Score = 29.1 bits (65), Expect = 0.73
Identities = 8/37 (21%), Positives = 14/37 (37%), Gaps = 2/37 (5%)
Query: 2 ITEVKKSDEG-KYQCYVQNMVGERETKPALLTVHAPP 37
I+ + ++D Y C N G +T+ L
Sbjct: 80 ISNIVRADFQTIYNCTAWNSFGS-DTEIIRLKEQGSE 115
>3mj6_A Junctional adhesion molecule-like; immunoglobulin tandem domain,
cell adhesion, cell junction, glycoprotein,
immunoglobulin domain, membrane; HET: NAG FUC; 2.19A
{Mus musculus} PDB: 3mj7_A* 3mj9_A*
Length = 268
Score = 79.5 bits (195), Expect = 1e-17
Identities = 30/172 (17%), Positives = 57/172 (33%), Gaps = 33/172 (19%)
Query: 1 MITEVKKSDEGKYQCYVQNMVGERETKPALLTVHAPPSFVVRPQDQKVGLNGIASFQCVA 60
++ +V+K+DEG Y C ++ K + + P P+D +V + +C
Sbjct: 87 LLQDVQKADEGIYTCEIRLKNESMVMK-KPVELWVLPEE---PRDLRVRVGDTTQMRCSI 142
Query: 61 EGSPLP---SVFWT------QEGSQVLMFPGNAYGHLHVTQE----------------GT 95
+ + V W E VL + N + G+
Sbjct: 143 QSTEEKRVTKVNWMFSSGSHTEEETVLSYDSNMRSGKFQSLGRFRNRVDLTGDISRNDGS 202
Query: 96 LRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVTSVEDTPPPIVQVGPSNQT 147
+++Q V++ D G + CS + L V + P+ T
Sbjct: 203 IKLQTVKESDQGIYTCSIYVGKLESRKTIVLHVVQ----DEFQRTISPTPPT 250
Score = 71.8 bits (175), Expect = 9e-15
Identities = 34/193 (17%), Positives = 62/193 (32%), Gaps = 34/193 (17%)
Query: 35 APPSFVVRPQDQKVGLNGIASFQCV---AEGSPLPSVFWTQEGSQ------VLMFPGNAY 85
P V +V + CV E + V W + VL + N
Sbjct: 4 GLPGLTVSSPQLRVHVGESVLMGCVVQRTEEKHVDRVDWLFSKDKDDASEYVLFYYSNLS 63
Query: 86 -------GHLHVTQE-----GTLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVTSVED 133
H+ + G+L +Q VQK D G + C S ++ +++ + +
Sbjct: 64 VPTGRFQNRSHLVGDTFHNDGSLLLQDVQKADEGIYTCEIRLKNESMVMKKPVELWVLPE 123
Query: 134 TPPPI-VQVGPSNQTLPLHSVAFLPCQAVGSPPPH---IRWYKNGNSLPPEDTRINVSSS 189
P + V+VG + + C + + W + S E+T ++ S+
Sbjct: 124 EPRDLRVRVGDT---------TQMRCSIQSTEEKRVTKVNWMFSSGSHTEEETVLSYDSN 174
Query: 190 GSLQIDVLRDDFR 202
FR
Sbjct: 175 MRSGKFQSLGRFR 187
Score = 37.5 bits (86), Expect = 0.003
Identities = 6/69 (8%), Positives = 19/69 (27%), Gaps = 3/69 (4%)
Query: 134 TPPPIVQVGPSNQTLPLHSVAFLPCQ---AVGSPPPHIRWYKNGNSLPPEDTRINVSSSG 190
P + V + + + C + W + + + + S+
Sbjct: 3 QGLPGLTVSSPQLRVHVGESVLMGCVVQRTEEKHVDRVDWLFSKDKDDASEYVLFYYSNL 62
Query: 191 SLQIDVLRD 199
S+ ++
Sbjct: 63 SVPTGRFQN 71
Score = 35.6 bits (81), Expect = 0.011
Identities = 9/62 (14%), Positives = 15/62 (24%), Gaps = 2/62 (3%)
Query: 200 DFRAEPKDTRVASGETALLEC--GPPKGQPEPTLHWKKNGQFIDLESSKRVSILGDPWFD 257
RV GE+ L+ C + + + W + D
Sbjct: 7 GLTVSSPQLRVHVGESVLMGCVVQRTEEKHVDRVDWLFSKDKDDASEYVLFYYSNLSVPT 66
Query: 258 SR 259
R
Sbjct: 67 GR 68
>3mtr_A N-CAM-1, NCAM-1, neural cell adhesion molecule 1; immunoglobulin
domain, fibronectin type III repeat, CE adhesion; 1.80A
{Homo sapiens}
Length = 215
Score = 77.9 bits (192), Expect = 3e-17
Identities = 21/137 (15%), Positives = 39/137 (28%), Gaps = 9/137 (6%)
Query: 11 GKYQCYVQNMVGERETKPALLTVHAPPSFVVRPQDQKVGLNGIASFQCVAEGSPLPSVFW 70
Y +V P P + C P ++ W
Sbjct: 1 ATYAAASSALVPRGS-------HMYAPKLQG-PVAVYTWEGNQVNITCEVFAYPSATISW 52
Query: 71 TQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVTS 130
++G + + + L + + D G + C+A++ G ++ L
Sbjct: 53 FRDGQLLPSSNYSNIKIYNTPSASYLEVTPDSENDFGNYNCTAVNRIGQESLEFILVQAD 112
Query: 131 VEDTPPPIVQVGPSNQT 147
P I QV P + T
Sbjct: 113 TPS-SPSIDQVEPYSST 128
Score = 64.8 bits (158), Expect = 1e-12
Identities = 17/80 (21%), Positives = 32/80 (40%), Gaps = 6/80 (7%)
Query: 127 QVTSVEDTPPPIVQVGPSNQTLPLHSVAFLPCQAVGSPPPHIRWYKNGNSLPPED-TRIN 185
V P +Q GP + + C+ P I W+++G LP + + I
Sbjct: 10 LVPRGSHMYAPKLQ-GPVAVYTWEGNQVNITCEVFAYPSATISWFRDGQLLPSSNYSNIK 68
Query: 186 VSSSGS---LQI-DVLRDDF 201
+ ++ S L++ +DF
Sbjct: 69 IYNTPSASYLEVTPDSENDF 88
Score = 50.2 bits (120), Expect = 1e-07
Identities = 16/82 (19%), Positives = 25/82 (30%), Gaps = 10/82 (12%)
Query: 204 EPKDTRVASGETALLECGPPKGQPEPTLHWKKNGQFIDLESSKRVSILGDPWFDSRRSRS 263
P G + C P T+ W ++GQ + + + I P S S
Sbjct: 24 GPVAVYTWEGNQVNITC-EVFAYPSATISWFRDGQLLPSSNYSNIKIYNTP------SAS 76
Query: 264 IFGSVLGALSDD--QWKLIAKN 283
V +D + A N
Sbjct: 77 YL-EVTPDSENDFGNYNCTAVN 97
Score = 40.6 bits (95), Expect = 2e-04
Identities = 10/38 (26%), Positives = 17/38 (44%), Gaps = 1/38 (2%)
Query: 1 MITEVKKSDEGKYQCYVQNMVGERETKPALLTVHAPPS 38
+T ++D G Y C N +G+ + +L PS
Sbjct: 79 EVTPDSENDFGNYNCTAVNRIGQESLE-FILVQADTPS 115
>2cr6_A KIAA1556 protein, obscurin; IG-fold, immunoglobulin domain,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 115
Score = 74.4 bits (183), Expect = 5e-17
Identities = 22/121 (18%), Positives = 40/121 (33%), Gaps = 15/121 (12%)
Query: 29 ALLTVHA-PPSFVVRPQDQKVGLNGIASFQCVAEGSPLPSVFWTQEGSQVLMFPGNAYGH 87
+ V + +D V A+F+C + V W + + + +
Sbjct: 5 SSGLVQGRRVHIIEDLEDVDVQEGSSATFRCRISPANYEPVHWFLDKTPL--HANE--LN 60
Query: 88 LHVTQEG---TLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVTSVEDTPPPIVQVGPS 144
Q G L ++ + +D+G AG A L V + P + GPS
Sbjct: 61 EIDAQPGGYHVLTLRQLALKDSGTIYF----EAGDQRASAAL---RVTEKPSVFSRSGPS 113
Query: 145 N 145
+
Sbjct: 114 S 114
Score = 50.9 bits (122), Expect = 2e-08
Identities = 14/87 (16%), Positives = 28/87 (32%), Gaps = 10/87 (11%)
Query: 118 GSTTVRAFLQVTSVEDTPPPIVQVGPSNQTLPLHSVAFLPCQAVGSPPPHIRWYKNGNSL 177
GS+ V+ I++ + + S A C+ + + W+ + L
Sbjct: 1 GSSGSSGL-----VQGRRVHIIE-DLEDVDVQEGSSATFRCRISPANYEPVHWFLDKTPL 54
Query: 178 PP-EDTRINVSSSG--SLQI-DVLRDD 200
E I+ G L + + D
Sbjct: 55 HANELNEIDAQPGGYHVLTLRQLALKD 81
Score = 49.7 bits (119), Expect = 4e-08
Identities = 13/65 (20%), Positives = 22/65 (33%), Gaps = 3/65 (4%)
Query: 187 SSSGSLQIDVLRDDFRAEPKDTRVASGETALLECGPPKGQPEPTLHWKKNGQFIDLESSK 246
SS S + R + +D V G +A C +HW + L +++
Sbjct: 2 SSGSSGLVQGRRVHIIEDLEDVDVQEGSSATFRCR-ISPANYEPVHWFLDKT--PLHANE 58
Query: 247 RVSIL 251
I
Sbjct: 59 LNEID 63
Score = 38.1 bits (89), Expect = 5e-04
Identities = 9/43 (20%), Positives = 14/43 (32%), Gaps = 5/43 (11%)
Query: 2 ITEVKKSDEGKYQCYVQNMVGERETKPALLTVHAPPSFVVRPQ 44
+ ++ D G G++ A L V PS R
Sbjct: 74 LRQLALKDSGTIYF----EAGDQRAS-AALRVTEKPSVFSRSG 111
>3bp6_B Programmed cell death 1 ligand 2; PD-1, PD-L2, complex,
costimulation, glycoprotein, immunoglo domain, membrane,
transmembrane, receptor; 1.60A {Mus musculus} PDB:
3bp5_B 3rnq_B 3bov_A 3rnk_B
Length = 202
Score = 76.2 bits (187), Expect = 7e-17
Identities = 29/176 (16%), Positives = 48/176 (27%), Gaps = 24/176 (13%)
Query: 30 LLTVHAPPSFVVRPQDQKVGLNGIASFQCVAEGSPLPSV-----FWTQEGSQVLMFPGNA 84
L TV AP V + S +C + + + + + A
Sbjct: 2 LFTVTAPKEVYT------VDVGSSVSLECDFDRRECTELEGIRASLQKVENDTSLQSERA 55
Query: 85 YGHLHVTQEG--TLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVTSVEDTPPPIVQVG 142
G I VQ D+G + C + A ++V + +
Sbjct: 56 TLLEEQLPLGKALFHIPSVQVRDSGQYRCLVICGAAWDYKYLTVKVKASYMRIDTRILEV 115
Query: 143 PSNQTLPLHSVAFLPCQAVGSPPPHIRWYKNGNSLPP-----EDTRINVSSSGSLQ 193
P + L CQA G P + W + V+S L+
Sbjct: 116 PGTGEV------QLTCQARGYPLAEVSWQNVSVPANTSHIRTPEGLYQVTSVLRLK 165
Score = 72.4 bits (177), Expect = 2e-15
Identities = 29/140 (20%), Positives = 46/140 (32%), Gaps = 14/140 (10%)
Query: 2 ITEVKKSDEGKYQCYVQNMVGERETKPALLTVHAPPSFV-VRPQDQKVGLNGIASFQCVA 60
I V+ D G+Y+C V LTV S++ + + +V G C A
Sbjct: 71 IPSVQVRDSGQYRCLVICGAAWDY---KYLTVKVKASYMRIDTRILEVPGTGEVQLTCQA 127
Query: 61 EGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQG---VQKEDAGFFVCSALSVA 117
G PL V W A T EG ++ ++ + + F C +
Sbjct: 128 RGYPLAEVSWQNVS-------VPANTSHIRTPEGLYQVTSVLRLKPQPSRNFSCMFWNAH 180
Query: 118 GSTTVRAFLQVTSVEDTPPP 137
A + S + P
Sbjct: 181 MKELTSAIIDPLSRMEPKVP 200
Score = 42.3 bits (99), Expect = 5e-05
Identities = 18/147 (12%), Positives = 30/147 (20%), Gaps = 40/147 (27%)
Query: 139 VQVGPSNQTLPLHSVAFLPCQAVGSPPPHIRWYKNGNSLPPEDT-----RINVSSSG--- 190
V T+ + S L C + + DT R +
Sbjct: 5 VTAPKEVYTVDVGSSVSLECDFDRRECTELEGIRASLQKVENDTSLQSERATLLEEQLPL 64
Query: 191 ---SLQI-DVLRDD---------------------------FRAEPKDTRVASGETALLE 219
I V D R + + V L
Sbjct: 65 GKALFHIPSVQVRDSGQYRCLVICGAAWDYKYLTVKVKASYMRIDTRILEVPGTGEVQLT 124
Query: 220 CGPPKGQPEPTLHWKKNGQFIDLESSK 246
C +G P + W+ + +
Sbjct: 125 C-QARGYPLAEVSWQNVSVPANTSHIR 150
>2cr3_A Basic fibroblast growth factor receptor 1; IG fold, FGFR1, BFGF-R,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 99
Score = 73.2 bits (180), Expect = 8e-17
Identities = 23/111 (20%), Positives = 40/111 (36%), Gaps = 14/111 (12%)
Query: 35 APPSFVVRPQDQKVGLNGIASFQCVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEG 94
+ S V + V + +C S+ W ++G Q+ +T
Sbjct: 2 SSGSSGVEVESFLVHPGDLLQLRCRLRDDV-QSINWLRDGVQLA-----ESNRTRITG-E 54
Query: 95 TLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVTSVEDTPPPIVQVGPSN 145
+ +Q D+G + C S +GS T + V+ D P GPS+
Sbjct: 55 EVEVQDSVPADSGLYACVTSSPSGSDTTYFSVNVS---DALPS----GPSS 98
Score = 51.2 bits (123), Expect = 9e-09
Identities = 10/66 (15%), Positives = 22/66 (33%), Gaps = 4/66 (6%)
Query: 136 PPIVQVGPSNQTLPLHSVAFLPCQAVGSPPPHIRWYKNGNSLPPEDTRINVSSSGSLQI- 194
V + + + L C+ I W ++G L R + + +++
Sbjct: 3 SGSSGVEVESFLVHPGDLLQLRCRLRD-DVQSINWLRDGVQLAE-SNRTRI-TGEEVEVQ 59
Query: 195 DVLRDD 200
D + D
Sbjct: 60 DSVPAD 65
Score = 47.4 bits (113), Expect = 2e-07
Identities = 12/53 (22%), Positives = 21/53 (39%), Gaps = 4/53 (7%)
Query: 201 FRAEPKDTRVASGETALLECGPPKGQPEPTLHWKKNGQFIDLESSKRVSILGD 253
E + V G+ L C + +++W ++G L S R I G+
Sbjct: 6 SGVEVESFLVHPGDLLQLRC-RLRDDV-QSINWLRDGV--QLAESNRTRITGE 54
Score = 35.8 bits (83), Expect = 0.002
Identities = 7/38 (18%), Positives = 12/38 (31%), Gaps = 1/38 (2%)
Query: 1 MITEVKKSDEGKYQCYVQNMVGERETKPALLTVHAPPS 38
+ + +D G Y C + G T + V
Sbjct: 57 EVQDSVPADSGLYACVTSSPSGSDTTY-FSVNVSDALP 93
>2cqv_A MLCK, myosin light chain kinase, smooth muscle and non- muscle
isozymes; IG fold, structural genomics, NPPSFA; NMR
{Homo sapiens} SCOP: b.1.1.4
Length = 114
Score = 73.5 bits (181), Expect = 1e-16
Identities = 25/113 (22%), Positives = 38/113 (33%), Gaps = 9/113 (7%)
Query: 35 APPSFVVRPQDQKVGLNGIASFQCVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEG 94
+ P + P+DQKV G+ + W + Q+ H+ V
Sbjct: 6 SGPQIIQFPEDQKVRAGESVELFGKVTGTQPITCTWMKFRKQI-----QESEHMKVENSE 60
Query: 95 ---TLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVTSVEDTPPPIVQVGPS 144
L I ++E G + + GS + L V D PP GPS
Sbjct: 61 NGSKLTILAARQEHCGCYTLLVENKLGSRQAQVNLTVVDKPD-PPAGTPSGPS 112
Score = 52.3 bits (126), Expect = 5e-09
Identities = 14/73 (19%), Positives = 26/73 (35%), Gaps = 6/73 (8%)
Query: 132 EDTPPPIVQVGPSNQTLPLHSVAFLPCQAVGSPPPHIRWYKNGNSLPPEDTRINVSSSG- 190
+ P I+Q P +Q + L + G+ P W K + + + V +S
Sbjct: 4 GSSGPQIIQ-FPEDQKVRAGESVELFGKVTGTQPITCTWMKFRKQIQESE-HMKVENSEN 61
Query: 191 --SLQI-DVLRDD 200
L I ++
Sbjct: 62 GSKLTILAARQEH 74
Score = 48.9 bits (117), Expect = 8e-08
Identities = 11/54 (20%), Positives = 21/54 (38%), Gaps = 3/54 (5%)
Query: 201 FRAEPKDTRVASGETALLECGPPKGQPEPTLHWKKNGQFIDLESSKRVSILGDP 254
P+D +V +GE+ L G T W K + ++ S+ + +
Sbjct: 10 IIQFPEDQKVRAGESVELFG-KVTGTQPITCTWMKFRK--QIQESEHMKVENSE 60
Score = 41.9 bits (99), Expect = 2e-05
Identities = 11/37 (29%), Positives = 17/37 (45%), Gaps = 1/37 (2%)
Query: 2 ITEVKKSDEGKYQCYVQNMVGERETKPALLTVHAPPS 38
I ++ G Y V+N +G R+ + LTV P
Sbjct: 67 ILAARQEHCGCYTLLVENKLGSRQAQ-VNLTVVDKPD 102
>2x1w_L Vascular endothelial growth factor receptor 2; hormone-signaling
protein complex, angiogenesis, glycoprotein, HOST-virus
interaction, membrane; HET: NAG BMA; 2.70A {Homo
sapiens} PDB: 2x1x_R*
Length = 213
Score = 75.6 bits (185), Expect = 2e-16
Identities = 23/138 (16%), Positives = 40/138 (28%), Gaps = 11/138 (7%)
Query: 2 ITEVKKSDEGKYQCYVQNMVGERETKPALLTVHAPPSFVVR---PQDQKVGLNGIASFQC 58
I S G C + ++ ++ V + V ++ + C
Sbjct: 68 IPSYMISYAGMVFCEAKINDESYQSIMYIVVVVGYRIYDVVLSPSHGIELSVGEKLVLNC 127
Query: 59 VAEGSPLPSVFWT--------QEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFV 110
A + + Q V G TL I GV + D G +
Sbjct: 128 TARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLSTLTIDGVTRSDQGLYT 187
Query: 111 CSALSVAGSTTVRAFLQV 128
C+A S + F++V
Sbjct: 188 CAASSGLMTKKNSTFVRV 205
Score = 54.0 bits (129), Expect = 7e-09
Identities = 20/159 (12%), Positives = 32/159 (20%), Gaps = 8/159 (5%)
Query: 37 PSFVVRPQDQK--VGLNGIASFQCVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEG 94
S + N C+ +V + P +
Sbjct: 8 ASVSDQHGVVYITENKNKTVVIPCLG-SISNLNVSLCARYPEKRFVPDGNRISWDSKK-- 64
Query: 95 TLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVTSVEDTPPPIVQVGPSNQTLPLHSVA 154
I AG C A S ++ V V +V L +
Sbjct: 65 GFTIPSYMISYAGMVFCEAKINDESYQSIMYIVVV-VGYRIYDVVLSPSHGIELSVGEKL 123
Query: 155 FLPCQAVGSP--PPHIRWYKNGNSLPPEDTRINVSSSGS 191
L C A W + + + S
Sbjct: 124 VLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQS 162
Score = 41.3 bits (96), Expect = 1e-04
Identities = 10/37 (27%), Positives = 17/37 (45%), Gaps = 1/37 (2%)
Query: 1 MITEVKKSDEGKYQCYVQNMVGERETKPALLTVHAPP 37
I V +SD+G Y C + + ++ + VH P
Sbjct: 174 TIDGVTRSDQGLYTCAASSGLMTKKNS-TFVRVHEDP 209
Score = 35.2 bits (80), Expect = 0.014
Identities = 18/175 (10%), Positives = 38/175 (21%), Gaps = 47/175 (26%)
Query: 128 VTSVEDTPPPIVQVGPSNQTLPLHSVAFLPCQAVGSPPPHIRWYKNGNS--LPPEDTRIN 185
+ SV D + N+T +PC ++ P+ RI+
Sbjct: 7 IASVSDQHGVVYITENKNKT------VVIPCL-GSISNLNVSLCARYPEKRFVPDGNRIS 59
Query: 186 VSSSGSLQIDVLRDDFR---------------------------------AEPKDTRVAS 212
S I + + ++
Sbjct: 60 WDSKKGFTIPSYMISYAGMVFCEAKINDESYQSIMYIVVVVGYRIYDVVLSPSHGIELSV 119
Query: 213 GETALLEC---GPPKGQPEPTLHWKKNGQFIDLESSKRVSILGDPWFDSRRSRSI 264
GE +L C +W+ + + + ++ S
Sbjct: 120 GEKLVLNCTARTEL--NVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLST 172
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG
containing, ligand binding protein,membr protein; HET:
NAG MAN; 2.70A {Homo sapiens}
Length = 477
Score = 78.2 bits (193), Expect = 2e-16
Identities = 27/103 (26%), Positives = 44/103 (42%), Gaps = 2/103 (1%)
Query: 28 PALLTVHAPPSFVVRPQDQKVGLNGIASFQCVAEGSPLPSVFWTQEGSQVLMFPGNAYGH 87
P T + Q V F C A+G P P++ W + + + G
Sbjct: 377 PNYFTCRRARIRDRKAQQVFVDEGHTVQFVCRADGDPPPAILWLS--PRKHLVSAKSNGR 434
Query: 88 LHVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVTS 130
L V +GTL ++ Q +D G ++C A + G+ ++ A L V S
Sbjct: 435 LTVFPDGTLEVRYAQVQDNGTYLCIAANAGGNDSMPAHLHVRS 477
Score = 52.4 bits (126), Expect = 7e-08
Identities = 14/69 (20%), Positives = 24/69 (34%), Gaps = 3/69 (4%)
Query: 135 PPPIVQVGPSNQTLPLHSVAFLPCQAVGSPPPHIRWYK-NGNSLPPE-DTRINVSSSGSL 192
I + C+A G PPP I W + + + + R+ V G+L
Sbjct: 384 RARIRDRKAQQVFVDEGHTVQFVCRADGDPPPAILWLSPRKHLVSAKSNGRLTVFPDGTL 443
Query: 193 QI-DVLRDD 200
++ D
Sbjct: 444 EVRYAQVQD 452
Score = 41.6 bits (98), Expect = 2e-04
Identities = 10/35 (28%), Positives = 15/35 (42%), Gaps = 1/35 (2%)
Query: 1 MITEVKKSDEGKYQCYVQNMVGERETKPALLTVHA 35
+ + D G Y C N G ++ PA L V +
Sbjct: 444 EVRYAQVQDNGTYLCIAANAGGN-DSMPAHLHVRS 477
Score = 41.6 bits (98), Expect = 2e-04
Identities = 11/51 (21%), Positives = 20/51 (39%), Gaps = 2/51 (3%)
Query: 204 EPKDTRVASGETALLECGPPKGQPEPTLHWKK-NGQFIDLESSKRVSILGD 253
+ + V G T C G P P + W + +S+ R+++ D
Sbjct: 391 KAQQVFVDEGHTVQFVC-RADGDPPPAILWLSPRKHLVSAKSNGRLTVFPD 440
>1gl4_B Basement membrane-specific heparan sulfate proteoglycan core
protein; immunoglobulin-like domain, extracellular
matrix; HET: EPE; 2.0A {Mus musculus} SCOP: b.1.1.4
Length = 98
Score = 71.8 bits (176), Expect = 3e-16
Identities = 27/101 (26%), Positives = 40/101 (39%), Gaps = 9/101 (8%)
Query: 30 LLTVHAPPSFVVR-PQDQKVGLNGIASFQCVAE-GSPLPSVFWTQEGSQVLMFPGNAYGH 87
L P V + Q V +F C A+ SP ++ WT+ + L P
Sbjct: 3 LAAPSKPIMVTVEEQRSQSVRPGADVTFICTAKSKSPAYTLVWTRLHNGKL--PSR---- 56
Query: 88 LHVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQV 128
+ G L I+ VQ DAG +VC+ ++ A L V
Sbjct: 57 -AMDFNGILTIRNVQPSDAGTYVCTGSNMFAMDQGTATLHV 96
Score = 56.4 bits (136), Expect = 1e-10
Identities = 14/73 (19%), Positives = 24/73 (32%), Gaps = 5/73 (6%)
Query: 130 SVEDTPPPIVQVGPSNQTLPLHSVAFLPCQAV-GSPPPHIRWYKNGNSLPPEDTRINVSS 188
+ P + +Q++ + C A SP + W + N P
Sbjct: 4 AAPSKPIMVTVEEQRSQSVRPGADVTFICTAKSKSPAYTLVWTRLHNGKLPSRAMD---F 60
Query: 189 SGSLQI-DVLRDD 200
+G L I +V D
Sbjct: 61 NGILTIRNVQPSD 73
Score = 41.3 bits (97), Expect = 3e-05
Identities = 8/37 (21%), Positives = 10/37 (27%)
Query: 204 EPKDTRVASGETALLECGPPKGQPEPTLHWKKNGQFI 240
E + V G C P TL W +
Sbjct: 16 EQRSQSVRPGADVTFICTAKSKSPAYTLVWTRLHNGK 52
Score = 37.5 bits (87), Expect = 5e-04
Identities = 12/33 (36%), Positives = 14/33 (42%), Gaps = 1/33 (3%)
Query: 2 ITEVKKSDEGKYQCYVQNMVGERETKPALLTVH 34
I V+ SD G Y C NM + A L V
Sbjct: 66 IRNVQPSDAGTYVCTGSNMFAMDQGT-ATLHVQ 97
>2ckn_A Basic fibroblast growth factor receptor 1; kinase, transferase,
heparin-binding, nucleotide-binding, immunoglobulin
domain, alternatice splicing; NMR {Mus musculus}
Length = 95
Score = 71.4 bits (175), Expect = 4e-16
Identities = 19/102 (18%), Positives = 36/102 (35%), Gaps = 7/102 (6%)
Query: 28 PALLTVHAPPSFVVRPQDQKVGLNGIASFQCVAEGSPLPSVFWTQEGSQVLMFPGNAYGH 87
P L P V + V + +C S+ W ++G Q++
Sbjct: 1 PTLPEQAQPWGVPVEVESLLVHPGDLLQLRCRLRDDV-QSINWLRDGVQLV-----ESNR 54
Query: 88 LHVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVT 129
+T + ++ D+G + C S +GS T + V+
Sbjct: 55 TRITG-EEVEVRDSIPADSGLYACVTSSPSGSDTTYFSVNVS 95
Score = 56.0 bits (135), Expect = 2e-10
Identities = 14/73 (19%), Positives = 26/73 (35%), Gaps = 4/73 (5%)
Query: 129 TSVEDTPPPIVQVGPSNQTLPLHSVAFLPCQAVGSPPPHIRWYKNGNSLPPEDTRINVSS 188
T E P V V + + + L C+ I W ++G L R + +
Sbjct: 2 TLPEQAQPWGVPVEVESLLVHPGDLLQLRCRLRD-DVQSINWLRDGVQLVE-SNRTRI-T 58
Query: 189 SGSLQI-DVLRDD 200
+++ D + D
Sbjct: 59 GEEVEVRDSIPAD 71
Score = 43.2 bits (102), Expect = 5e-06
Identities = 12/53 (22%), Positives = 20/53 (37%), Gaps = 4/53 (7%)
Query: 201 FRAEPKDTRVASGETALLECGPPKGQPEPTLHWKKNGQFIDLESSKRVSILGD 253
E + V G+ L C +++W ++G L S R I G+
Sbjct: 12 VPVEVESLLVHPGDLLQLRC--RLRDDVQSINWLRDGV--QLVESNRTRITGE 60
Score = 33.2 bits (76), Expect = 0.018
Identities = 7/33 (21%), Positives = 12/33 (36%), Gaps = 1/33 (3%)
Query: 1 MITEVKKSDEGKYQCYVQNMVGERETKPALLTV 33
+ + +D G Y C + G T + V
Sbjct: 63 EVRDSIPADSGLYACVTSSPSGSDTTY-FSVNV 94
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4
complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB:
3zyo_A* 3zyn_A* 2dl9_A
Length = 452
Score = 76.3 bits (188), Expect = 6e-16
Identities = 25/102 (24%), Positives = 42/102 (41%), Gaps = 3/102 (2%)
Query: 36 PPSFVVRPQDQKVGLNGIASFQCVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGT 95
P + P+D + +A +C P+ SV W VL + + + V +GT
Sbjct: 352 APFIMDAPRDLNISEGRMAELKCRT--PPMSSVKWLLPNGTVLS-HASRHPRISVLNDGT 408
Query: 96 LRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVTSVEDTPPP 137
L V D G + C +VAG++ A+L V++
Sbjct: 409 LNFSHVLLSDTGVYTCMVTNVAGNSNASAYLNVSTAGTHHHH 450
Score = 45.5 bits (108), Expect = 1e-05
Identities = 17/83 (20%), Positives = 31/83 (37%), Gaps = 7/83 (8%)
Query: 123 RAFLQVTSVEDT-PPPIVQVGPSNQTLPLHSVAFLPCQAVGSPPPHIRWYKNGNSLP--- 178
R ++V P + P + + +A L C+ P ++W ++
Sbjct: 338 RYLVEVDQASFQCSAPFIMDAPRDLNISEGRMAELKCRT--PPMSSVKWLLPNGTVLSHA 395
Query: 179 PEDTRINVSSSGSLQI-DVLRDD 200
RI+V + G+L VL D
Sbjct: 396 SRHPRISVLNDGTLNFSHVLLSD 418
Score = 40.9 bits (96), Expect = 3e-04
Identities = 12/38 (31%), Positives = 15/38 (39%), Gaps = 1/38 (2%)
Query: 1 MITEVKKSDEGKYQCYVQNMVGERETKPALLTVHAPPS 38
+ V SD G Y C V N+ G A L V +
Sbjct: 410 NFSHVLLSDTGVYTCMVTNVAGNS-NASAYLNVSTAGT 446
Score = 37.8 bits (88), Expect = 0.003
Identities = 15/52 (28%), Positives = 25/52 (48%), Gaps = 5/52 (9%)
Query: 204 EPKDTRVASGETALLECGPPKGQPEPTLHWKK-NGQFIDLESSK-RVSILGD 253
P+D ++ G A L+C + P ++ W NG + S R+S+L D
Sbjct: 358 APRDLNISEGRMAELKC---RTPPMSSVKWLLPNGTVLSHASRHPRISVLND 406
>1wit_A Twitchin 18TH IGSF module; immunoglobulin superfamily, I SET,
muscle protein; NMR {Caenorhabditis elegans} SCOP:
b.1.1.4 PDB: 1wiu_A
Length = 93
Score = 70.4 bits (173), Expect = 8e-16
Identities = 14/96 (14%), Positives = 30/96 (31%), Gaps = 8/96 (8%)
Query: 36 PPSFVVRPQDQKVGLNGIASFQCVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEG- 94
P + + K+ + + G+P P+ WT S L V +
Sbjct: 2 KPKILTASRKIKIKAGFTHNLEVDFIGAPDPTATWTVGDSGA-----ALAPELLVDAKSS 56
Query: 95 --TLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQV 128
++ ++ D+G + + G + V
Sbjct: 57 TTSIFFPSAKRADSGNYKLKVKNELGEDEAIFEVIV 92
Score = 55.4 bits (134), Expect = 3e-10
Identities = 10/69 (14%), Positives = 18/69 (26%), Gaps = 5/69 (7%)
Query: 136 PPIVQVGPSNQTLPLHSVAFLPCQAVGSPPPHIRWYKNGNSLPPEDTRINVSSSG---SL 192
P + + L +G+P P W + + V + S+
Sbjct: 2 KPKILTASRKIKIKAGFTHNLEVDFIGAPDPTATWTVGDSGA-ALAPELLVDAKSSTTSI 60
Query: 193 QI-DVLRDD 200
R D
Sbjct: 61 FFPSAKRAD 69
Score = 49.2 bits (118), Expect = 4e-08
Identities = 9/54 (16%), Positives = 17/54 (31%), Gaps = 3/54 (5%)
Query: 201 FRAEPKDTRVASGETALLECGPPKGQPEPTLHWKKNGQFIDLESSKRVSILGDP 254
+ ++ +G T LE G P+PT W + + +
Sbjct: 5 ILTASRKIKIKAGFTHNLEV-DFIGAPDPTATWTVGDS--GAALAPELLVDAKS 55
Score = 38.1 bits (89), Expect = 3e-04
Identities = 10/32 (31%), Positives = 16/32 (50%), Gaps = 1/32 (3%)
Query: 2 ITEVKKSDEGKYQCYVQNMVGERETKPALLTV 33
K++D G Y+ V+N +GE E + V
Sbjct: 62 FPSAKRADSGNYKLKVKNELGEDEAI-FEVIV 92
>2e7b_A Obscurin; IG-like domain, structural genomics, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens} PDB: 2yz8_A
Length = 103
Score = 70.4 bits (173), Expect = 1e-15
Identities = 28/104 (26%), Positives = 45/104 (43%), Gaps = 13/104 (12%)
Query: 35 APPSFVVRPQDQKVGLNGIASFQCVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEG 94
P F +D +V G A+ +CV P V W + + PG+ Y + QEG
Sbjct: 7 GPVRFQEALKDLEVLEGGAATLRCVLSSVAAP-VKWCYGNNVL--RPGDKY---SLRQEG 60
Query: 95 ---TLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVTSVEDTP 135
L ++ ++ +D+G + C G T A L VT++ P
Sbjct: 61 AMLELVVRNLRPQDSGRYSC----SFGDQTTSATLTVTALPSGP 100
Score = 46.9 bits (112), Expect = 3e-07
Identities = 15/75 (20%), Positives = 26/75 (34%), Gaps = 6/75 (8%)
Query: 130 SVEDTPPPIVQVGPSNQTLPLHSVAFLPCQAVGSPPPHIRWYKNGNSLPPEDTRINVSSS 189
S + P Q + + A L C P ++W N L P D + ++
Sbjct: 2 SSGSSGPVRFQEALKDLEVLEGGAATLRCVLSSVAAP-VKWCYGNNVLRPGD-KYSLRQE 59
Query: 190 G---SLQI-DVLRDD 200
G L + ++ D
Sbjct: 60 GAMLELVVRNLRPQD 74
Score = 40.8 bits (96), Expect = 5e-05
Identities = 11/57 (19%), Positives = 16/57 (28%), Gaps = 10/57 (17%)
Query: 200 DFRAEPKDTRVASGETALLEC---GPPKGQPEPTLHWKKNGQFIDLESSKRVSILGD 253
F+ KD V G A L C + W L + S+ +
Sbjct: 10 RFQEALKDLEVLEGGAATLRCVLSSVA-----APVKWCYGNN--VLRPGDKYSLRQE 59
Score = 37.7 bits (88), Expect = 5e-04
Identities = 13/37 (35%), Positives = 19/37 (51%), Gaps = 5/37 (13%)
Query: 2 ITEVKKSDEGKYQCYVQNMVGERETKPALLTVHAPPS 38
+ ++ D G+Y C G++ T A LTV A PS
Sbjct: 67 VRNLRPQDSGRYSC----SFGDQTTS-ATLTVTALPS 98
>3ry4_A Low affinity immunoglobulin gamma FC region recep; FC receptor,
CD32, immunoglobulin superfamily, low responder
polymorphism, cell membrane; HET: NAG; 1.50A {Homo
sapiens} PDB: 1fcg_A 3ry5_A 1h9v_A 3d5o_F* 3ry6_C*
2fcb_A
Length = 170
Score = 72.2 bits (177), Expect = 1e-15
Identities = 25/131 (19%), Positives = 43/131 (32%), Gaps = 19/131 (14%)
Query: 134 TPPPIVQVGPSNQTLPLHSVAFLPCQAVGSPPPH-IRWYKNGNSLPPEDTRINVSS---- 188
P ++++ P + L CQ SP I+W+ NGN +P
Sbjct: 2 PPKAVLKLEPPWINVLQEDSVTLTCQGARSPESDSIQWFHNGNLIPTHTQPSYRFKANNN 61
Query: 189 --------------SGSLQIDVLRDDFRAEPKDTRVASGETALLECGPPKGQPEPTLHWK 234
S + + VL + + GET +L C K +P + +
Sbjct: 62 DSGEYTCQTGQTSLSDPVHLTVLFEWLVLQTPHLEFQEGETIMLRCHSWKDKPLVKVTFF 121
Query: 235 KNGQFIDLESS 245
+NG+
Sbjct: 122 QNGKSQKFSHL 132
Score = 69.8 bits (171), Expect = 8e-15
Identities = 29/164 (17%), Positives = 48/164 (29%), Gaps = 30/164 (18%)
Query: 35 APPSFVVR--PQDQKVGLNGIASFQCVAEGSPLP-SVFWTQEGSQVLMFPGNAYGHLHVT 91
APP V++ P V + C SP S+ W G+ + T
Sbjct: 1 APPKAVLKLEPPWINVLQEDSVTLTCQGARSPESDSIQWFHNGNLIP------------T 48
Query: 92 QEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVTSVEDTPPPIVQVGPSNQTLPLH 151
D+G + C + S V L V +V P +
Sbjct: 49 HTQPSYRFKANNNDSGEYTCQTGQTSLSDPVH--LTVLF-----EWLVLQTPHLEFQEGE 101
Query: 152 SVAFLPCQAVGSPPPH-IRWYKNGNSLPPEDTRINVSSSGSLQI 194
++ L C + P + +++NG S + I
Sbjct: 102 TI-MLRCHSWKDKPLVKVTFFQNGKSQKF------SHLDPTFSI 138
Score = 66.0 bits (161), Expect = 2e-13
Identities = 20/129 (15%), Positives = 36/129 (27%), Gaps = 16/129 (12%)
Query: 2 ITEVKKSDEGKYQCYVQNMVGERETKPALLTVHAPPSFVVRPQDQKVGLNGIASFQCVAE 61
+ +D G+Y C + P LTV + P + +C +
Sbjct: 55 RFKANNNDSGEYTCQTGQTSL---SDPVHLTVLFEWLVLQTPHLE-FQEGETIMLRCHSW 110
Query: 62 GS-PLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGST 120
PL V + Q G + T I +G + C+
Sbjct: 111 KDKPLVKVTFFQNGKSQKFSHLD----------PTFSIPQANHSHSGDYHCTGNIGYTLF 160
Query: 121 TVRAF-LQV 128
+ + + V
Sbjct: 161 SSKPVTITV 169
>1wwc_A Protein (NT-3 growth factor receptor TRKC); TRK receptor, receptor
tyrosine kinase, 3D-domain swapping, transferase; 1.90A
{Homo sapiens} SCOP: b.1.1.4
Length = 118
Score = 70.2 bits (172), Expect = 2e-15
Identities = 25/119 (21%), Positives = 44/119 (36%), Gaps = 14/119 (11%)
Query: 31 LTVHAPPSFVVRPQDQKVGLNGIASFQCVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHV 90
LTV+ PP V ++ ++ L + V G+P P++ W G + + H+
Sbjct: 3 LTVYYPPRVV-SLEEPELRLE--HCIEFVVRGNPPPTLHWLHNGQPL---RESKIIHVEY 56
Query: 91 TQE-----GTLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVTSVEDTPPPIVQVGPS 144
QE G L + G + A + G+ P P+ +V P+
Sbjct: 57 YQEGEISEGCLLFNKPTHYNNGNYTLIAKNPLGTANQTINGH---FLKEPFPVDEVSPT 112
Score = 47.9 bits (114), Expect = 2e-07
Identities = 18/74 (24%), Positives = 25/74 (33%), Gaps = 13/74 (17%)
Query: 135 PPPIVQVGPSNQTLPLHSVAFLPCQAVGSPPPHIRWYKNGNSLPPEDTRINVS------- 187
PP +V + L + G+PPP + W NG L E I+V
Sbjct: 8 PPRVVSLEEPELRLEHC----IEFVVRGNPPPTLHWLHNGQPL-RESKIIHVEYYQEGEI 62
Query: 188 SSGSLQI-DVLRDD 200
S G L +
Sbjct: 63 SEGCLLFNKPTHYN 76
Score = 39.0 bits (91), Expect = 3e-04
Identities = 6/40 (15%), Positives = 12/40 (30%), Gaps = 1/40 (2%)
Query: 1 MITEVKKSDEGKYQCYVQNMVGERETKPALLTVHAPPSFV 40
+ + + G Y +N +G + P V
Sbjct: 68 LFNKPTHYNNGNYTLIAKNPLGT-ANQTINGHFLKEPFPV 106
Score = 37.5 bits (87), Expect = 8e-04
Identities = 23/83 (27%), Positives = 34/83 (40%), Gaps = 9/83 (10%)
Query: 205 PKDTRVASGETAL---LECGPPKGQPEPTLHWKKNGQFIDLESSKRVSILGDPWFDSRRS 261
P+ + E L +E +G P PTLHW NGQ L SK + + +
Sbjct: 9 PRVVSLEEPELRLEHCIEF-VVRGNPPPTLHWLHNGQ--PLRESKIIHVEYYQEGEISEG 65
Query: 262 RSIFGSVLGALSDD-QWKLIAKN 283
+F ++ + LIAKN
Sbjct: 66 CLLFNKP--THYNNGNYTLIAKN 86
>3bfo_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1
(isoform 2); hydrolase, immunoglobulin domain, nucleus,
protease; 1.15A {Homo sapiens}
Length = 91
Score = 69.3 bits (170), Expect = 2e-15
Identities = 19/90 (21%), Positives = 28/90 (31%), Gaps = 11/90 (12%)
Query: 35 APPSFVVRPQDQKVGLNGIASFQCVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEG 94
+ V P QK+ QCVA GSP+P W + L +
Sbjct: 2 SKLQICVEPTSQKLMPGSTLVLQCVAVGSPIPHYQWFKNELP-----------LTHETKK 50
Query: 95 TLRIQGVQKEDAGFFVCSALSVAGSTTVRA 124
+ V E G + C + S +
Sbjct: 51 LYMVPYVDLEHQGTYWCHVYNDRDSQDSKK 80
Score = 59.3 bits (144), Expect = 9e-12
Identities = 19/49 (38%), Positives = 26/49 (53%)
Query: 136 PPIVQVGPSNQTLPLHSVAFLPCQAVGSPPPHIRWYKNGNSLPPEDTRI 184
+ V P++Q L S L C AVGSP PH +W+KN L E ++
Sbjct: 3 KLQICVEPTSQKLMPGSTLVLQCVAVGSPIPHYQWFKNELPLTHETKKL 51
Score = 48.5 bits (116), Expect = 6e-08
Identities = 8/39 (20%), Positives = 17/39 (43%)
Query: 1 MITEVKKSDEGKYQCYVQNMVGERETKPALLTVHAPPSF 39
M+ V +G Y C+V N +++K + + +
Sbjct: 53 MVPYVDLEHQGTYWCHVYNDRDSQDSKKVEIIIDELNNL 91
Score = 46.2 bits (110), Expect = 5e-07
Identities = 14/50 (28%), Positives = 21/50 (42%), Gaps = 1/50 (2%)
Query: 201 FRAEPKDTRVASGETALLECGPPKGQPEPTLHWKKNGQFIDLESSKRVSI 250
EP ++ G T +L+C G P P W KN + E+ K +
Sbjct: 6 ICVEPTSQKLMPGSTLVLQCVAV-GSPIPHYQWFKNELPLTHETKKLYMV 54
>2eny_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 104
Score = 69.3 bits (170), Expect = 3e-15
Identities = 22/107 (20%), Positives = 34/107 (31%), Gaps = 16/107 (14%)
Query: 35 APPSFVVRPQDQKVGLNGIASFQC-VAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQE 93
R + +V SF+C ++ S WT G V + T++
Sbjct: 7 GHVGITKRLKTMEVLEGESCSFECVLSHESASDPAMWTVGGKTV-----GSSSRFQATRQ 61
Query: 94 G---TLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVTSVEDTPPP 137
G L ++ DAG V T +A L V + P
Sbjct: 62 GRKYILVVREAAPSDAGEVVF----SVRGLTSKASL---IVRERSGP 101
Score = 52.8 bits (127), Expect = 3e-09
Identities = 11/53 (20%), Positives = 14/53 (26%), Gaps = 2/53 (3%)
Query: 201 FRAEPKDTRVASGETALLECGPPKGQPEPTLHWKKNGQFIDLESSKRVSILGD 253
K V GE+ EC W G+ + SS R
Sbjct: 11 ITKRLKTMEVLEGESCSFECVLSHESASDPAMWTVGGK--TVGSSSRFQATRQ 61
Score = 43.5 bits (103), Expect = 6e-06
Identities = 10/77 (12%), Positives = 19/77 (24%), Gaps = 7/77 (9%)
Query: 129 TSVEDTPPPIVQVGPSNQTLPLHSVAFLPCQ-AVGSPPPHIRWYKNGNSLPPEDTRINVS 187
+S I + + C + S W G ++ R +
Sbjct: 2 SSGSSGHVGITK-RLKTMEVLEGESCSFECVLSHESASDPAMWTVGGKTVGSSS-RFQAT 59
Query: 188 SSG---SLQI-DVLRDD 200
G L + + D
Sbjct: 60 RQGRKYILVVREAAPSD 76
Score = 33.9 bits (78), Expect = 0.013
Identities = 9/37 (24%), Positives = 12/37 (32%), Gaps = 5/37 (13%)
Query: 2 ITEVKKSDEGKYQCYVQNMVGERETKPALLTVHAPPS 38
+ E SD G+ V +K A L V
Sbjct: 69 VREAAPSDAGEVVF----SVRGLTSK-ASLIVRERSG 100
>2dku_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 103
Score = 68.9 bits (169), Expect = 3e-15
Identities = 24/104 (23%), Positives = 35/104 (33%), Gaps = 13/104 (12%)
Query: 35 APPSFVVRPQDQKVGLNGIASFQCVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEG 94
F + +V G A F C P +V W + ++ G +QEG
Sbjct: 7 GANCFTEELTNLQVEEKGTAVFTCKT-EHPAATVTWRKGLLEL--RAS---GKHQPSQEG 60
Query: 95 ---TLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVTSVEDTP 135
L I ++K D+ + C G RA L V P
Sbjct: 61 LTLRLTISALEKADSDTYTC----DIGQAQSRAQLLVQGRRSGP 100
Score = 47.3 bits (113), Expect = 2e-07
Identities = 13/75 (17%), Positives = 21/75 (28%), Gaps = 6/75 (8%)
Query: 130 SVEDTPPPIVQVGPSNQTLPLHSVAFLPCQAVGSPPPHIRWYKNGNSLPPEDTRINVSSS 189
S + +N + A C+ P + W K L + S
Sbjct: 2 SSGSSGANCFTEELTNLQVEEKGTAVFTCK-TEHPAATVTWRKGLLELRASG-KHQPSQE 59
Query: 190 G---SLQI-DVLRDD 200
G L I + + D
Sbjct: 60 GLTLRLTISALEKAD 74
Score = 44.6 bits (106), Expect = 2e-06
Identities = 12/53 (22%), Positives = 21/53 (39%), Gaps = 4/53 (7%)
Query: 201 FRAEPKDTRVASGETALLECGPPKGQPEPTLHWKKNGQFIDLESSKRVSILGD 253
F E + +V TA+ C P T+ W+K +L +S + +
Sbjct: 11 FTEELTNLQVEEKGTAVFTC--KTEHPAATVTWRKGLL--ELRASGKHQPSQE 59
Score = 36.2 bits (84), Expect = 0.002
Identities = 10/37 (27%), Positives = 19/37 (51%), Gaps = 5/37 (13%)
Query: 2 ITEVKKSDEGKYQCYVQNMVGERETKPALLTVHAPPS 38
I+ ++K+D Y C +G+ +++ A L V S
Sbjct: 67 ISALEKADSDTYTC----DIGQAQSR-AQLLVQGRRS 98
>2edh_A Obscurin; structural genomics, NPPSFA, national project on P
structural and functional analyses, riken structural
genomics/proteomics initiative; NMR {Homo sapiens}
Length = 113
Score = 68.9 bits (169), Expect = 5e-15
Identities = 29/118 (24%), Positives = 48/118 (40%), Gaps = 15/118 (12%)
Query: 22 GERETKPALLTVHA-PPSFVVRPQDQKVGLNGIASFQCVAEGSPLPSVFWTQEGSQVLMF 80
G A+LTV A P F ++++ A +C E S + V W + +
Sbjct: 4 GSSGRTSAMLTVRALPIKFTEGLRNEEATEGATAVLRC--ELSKMAPVEWWKGHETL--- 58
Query: 81 PGNAYGHLHVTQEG---TLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVTSVEDTP 135
+ Q+G L+I+G+ EDAG ++C + G A L V ++ P
Sbjct: 59 --RDGDRHSLRQDGARCELQIRGLVAEDAGEYLC----MCGKERTSAMLTVRAMPSGP 110
Score = 50.8 bits (122), Expect = 2e-08
Identities = 15/69 (21%), Positives = 25/69 (36%), Gaps = 5/69 (7%)
Query: 185 NVSSSGSLQIDVLRDDFRAEPKDTRVASGETALLECGPPKGQPEPTLHWKKNGQFIDLES 244
+ +S L + L F ++ G TA+L C + + W K + L
Sbjct: 6 SGRTSAMLTVRALPIKFTEGLRNEEATEGATAVLRC---ELSKMAPVEWWKGHE--TLRD 60
Query: 245 SKRVSILGD 253
R S+ D
Sbjct: 61 GDRHSLRQD 69
Score = 49.7 bits (119), Expect = 5e-08
Identities = 21/88 (23%), Positives = 34/88 (38%), Gaps = 11/88 (12%)
Query: 117 AGSTTVRAFLQVTSVEDTPPPIVQVGPSNQTLPLHSVAFLPCQAVGSPPPHIRWYKNGNS 176
S A L +V P + G N+ + A L C+ S + W+K +
Sbjct: 4 GSSGRTSAML---TVRALPIKFTE-GLRNEEATEGATAVLRCEL--SKMAPVEWWKGHET 57
Query: 177 LPPEDTRINVSSSG---SLQI-DVLRDD 200
L D R ++ G LQI ++ +D
Sbjct: 58 LRDGD-RHSLRQDGARCELQIRGLVAED 84
Score = 37.7 bits (88), Expect = 6e-04
Identities = 15/37 (40%), Positives = 19/37 (51%), Gaps = 5/37 (13%)
Query: 2 ITEVKKSDEGKYQCYVQNMVGERETKPALLTVHAPPS 38
I + D G+Y C M G+ T A+LTV A PS
Sbjct: 77 IRGLVAEDAGEYLC----MCGKERTS-AMLTVRAMPS 108
>1f2q_A High affinity immunoglobulin epsilon receptor ALP subunit;
immunoglobulin fold, glycoprotein, IGE-binding Pro
immune system; HET: NAG MAN; 2.40A {Homo sapiens} SCOP:
b.1.1.4 b.1.1.4 PDB: 1j86_A* 1rpq_A* 2y7q_A* 1f6a_A*
1j88_A* 1j89_A* 1j87_A*
Length = 176
Score = 70.3 bits (172), Expect = 6e-15
Identities = 18/130 (13%), Positives = 38/130 (29%), Gaps = 19/130 (14%)
Query: 135 PPPIVQVGPSNQTLPLHSVAFLPCQAVGSPPPH-IRWYKNGNSLPPEDTRI--------- 184
P V + P + L C +W+ NG+ ++ +
Sbjct: 3 QKPKVSLNPPWNRIFKGENVTLTCNGNNFFEVSSTKWFHNGSLSEETNSSLNIVNAKFED 62
Query: 185 ---------NVSSSGSLQIDVLRDDFRAEPKDTRVASGETALLECGPPKGQPEPTLHWKK 235
V+ S + ++V D + V G+ L C + + + K
Sbjct: 63 SGEYKCQHQQVNESEPVYLEVFSDWLLLQASAEVVMEGQPLFLRCHGWRNWDVYKVIYYK 122
Query: 236 NGQFIDLESS 245
+G+ +
Sbjct: 123 DGEALKYWYE 132
Score = 65.7 bits (160), Expect = 3e-13
Identities = 27/165 (16%), Positives = 47/165 (28%), Gaps = 30/165 (18%)
Query: 33 VHAPPSFVVRPQDQKVGLNGIASFQCVAEGSPLP-SVFWTQEGSQVLMFPGNAYGHLHVT 91
V P + P ++ + C S W G L
Sbjct: 1 VPQKPKVSLNPPWNRIFKGENVTLTCNGNNFFEVSSTKWFHNG------------SLSEE 48
Query: 92 QEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVTSVEDTPPP-IVQVGPSNQTLPL 150
+L I + ED+G + C V S V + + +V G
Sbjct: 49 TNSSLNIVNAKFEDSGEYKCQHQQVNESEPVYLEVFSDWLLLQASAEVVMEGQP------ 102
Query: 151 HSVAFLPCQAVGSPPPH-IRWYKNGNSLPPEDTRINVSSSGSLQI 194
FL C + + + +YK+G +L + ++ I
Sbjct: 103 ---LFLRCHGWRNWDVYKVIYYKDGEALKY------WYENHNISI 138
Score = 62.6 bits (152), Expect = 4e-12
Identities = 20/121 (16%), Positives = 41/121 (33%), Gaps = 15/121 (12%)
Query: 2 ITEVKKSDEGKYQCYVQNMVGERETKPALLTVHAPPSFVVRPQDQKVGLNGIASFQCVAE 61
I K D G+Y+C Q + ++P L V + +++ + V +C
Sbjct: 55 IVNAKFEDSGEYKCQHQQVNE---SEPVYLEVFSDW-LLLQASAEVVMEGQPLFLRCHGW 110
Query: 62 -GSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGST 120
+ V + ++G + + N + I ED+G + C+
Sbjct: 111 RNWDVYKVIYYKDGEALKYWYEN----------HNISITNATVEDSGTYYCTGKVWQLDY 160
Query: 121 T 121
Sbjct: 161 E 161
Score = 45.7 bits (108), Expect = 3e-06
Identities = 11/36 (30%), Positives = 16/36 (44%)
Query: 2 ITEVKKSDEGKYQCYVQNMVGERETKPALLTVHAPP 37
IT D G Y C + + E++P +TV P
Sbjct: 138 ITNATVEDSGTYYCTGKVWQLDYESEPLNITVIKAP 173
>3caf_A Fibroblast growth factor receptor 2; FGFR2, D2, ATP-binding,
disease MU ectodermal dysplasia, glycoprotein,
heparin-binding, immuno domain, kinase; 1.96A {Homo
sapiens} PDB: 3cu1_A* 3euu_A 3dar_A 1wvz_A
Length = 100
Score = 67.9 bits (166), Expect = 8e-15
Identities = 21/98 (21%), Positives = 37/98 (37%), Gaps = 5/98 (5%)
Query: 35 APPSFV----VRPQDQKVGLNGIASFQCVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHV 90
P + + + V F+C A G+P+P++ W + G + G+
Sbjct: 3 RAPYWTNTEKMEKRLHAVPAANTVKFRCPAGGNPMPTMRWLKNG-KEFKQEHRIGGYKVR 61
Query: 91 TQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQV 128
Q +L ++ V D G + C + GS L V
Sbjct: 62 NQHWSLIMESVVPSDKGNYTCVVENEYGSINHTYHLDV 99
Score = 58.2 bits (141), Expect = 2e-11
Identities = 17/74 (22%), Positives = 24/74 (32%), Gaps = 7/74 (9%)
Query: 134 TPPPIVQ---VGPSNQTLPLHSVAFLPCQAVGSPPPHIRWYKNGNSLPPEDTRINVSSS- 189
P + +P + C A G+P P +RW KNG E
Sbjct: 3 RAPYWTNTEKMEKRLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRN 62
Query: 190 --GSLQI-DVLRDD 200
SL + V+ D
Sbjct: 63 QHWSLIMESVVPSD 76
Score = 45.1 bits (107), Expect = 1e-06
Identities = 14/49 (28%), Positives = 22/49 (44%), Gaps = 3/49 (6%)
Query: 202 RAEPKDTRVASGETALLECGPPKGQPEPTLHWKKNGQFIDLESSKRVSI 250
+ E + V + T C P G P PT+ W KNG+ + + R+
Sbjct: 12 KMEKRLHAVPAANTVKFRC-PAGGNPMPTMRWLKNGK--EFKQEHRIGG 57
Score = 38.6 bits (90), Expect = 2e-04
Identities = 11/33 (33%), Positives = 15/33 (45%), Gaps = 1/33 (3%)
Query: 1 MITEVKKSDEGKYQCYVQNMVGERETKPALLTV 33
++ V SD+G Y C V+N G L V
Sbjct: 68 IMESVVPSDKGNYTCVVENEYGSINHT-YHLDV 99
>1vca_A VCAM-D1,2, human vascular cell adhesion molecule-1; immunoglobulin
superfamily, integrin-binding, cell adhesion protein;
1.80A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 PDB: 1ij9_A
1vsc_A
Length = 202
Score = 70.6 bits (172), Expect = 9e-15
Identities = 25/171 (14%), Positives = 50/171 (29%), Gaps = 15/171 (8%)
Query: 41 VRPQDQKVGLNGI-ASFQCVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQ 99
P+ + + G S C G P W + L + TL +
Sbjct: 5 TTPESRYLAQIGDSVSLTCSTTGCESPFFSWRTQIDSPL-----NGKVTNEGTTSTLTMN 59
Query: 100 GVQKEDAGFFVCSALSVAGSTTVRAFLQVTSVEDTPPPIVQVGPSNQTLPLHSVAFLPCQ 159
V + ++C+A + +++ S P ++ + L + C
Sbjct: 60 PVSFGNEHSYLCTATCESRKLEKGIQVEIYS----FPKDPEI-HLSGPLEAGKPITVKCS 114
Query: 160 AVGSPP---PHIRWYKNGNSLPPEDTRINVSSSGSLQIDVLRDDFRAEPKD 207
P I K + + + + + SL+ L F +D
Sbjct: 115 VADVYPFDRLEIDLLKGDHLMKSQ-EFLEDADRKSLETKSLEVTFTPVIED 164
Score = 60.6 bits (146), Expect = 3e-11
Identities = 19/149 (12%), Positives = 40/149 (26%), Gaps = 10/149 (6%)
Query: 2 ITEVKKSDEGKYQCYVQNMVGERETKPALLTVHAPPSFVVRPQDQKVGLNGIASFQCVAE 61
+ V +E Y C + E K + +++ P + + +C
Sbjct: 58 MNPVSFGNEHSYLCTATCESRKLE-KGIQVEIYSFPKDPEIHLSGPLEAGKPITVKCSVA 116
Query: 62 GS---PLPSVFWTQEGSQVL--MFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSV 116
+ + + F +A T+ + V ++ VC A
Sbjct: 117 DVYPFDRLEIDLLKGDHLMKSQEFLEDADRKSLETKSLEVTFTPVIEDIGKVLVCRAKLH 176
Query: 117 AGSTTVRAFLQVTSVEDTPPPIVQVGPSN 145
++ E V + P N
Sbjct: 177 IDEMDSVPTVRQAVKELQ----VYISPKN 201
Score = 50.2 bits (119), Expect = 1e-07
Identities = 16/151 (10%), Positives = 35/151 (23%), Gaps = 42/151 (27%)
Query: 126 LQVTSVEDTPPPIVQVGPSNQTLPLHSVAFLPCQAVGSPPPHIRWYKNGNSLPPEDTRIN 185
++ + Q+G S L C G P W +S P N
Sbjct: 1 FKI-ETTPESRYLAQIGDS---------VSLTCSTTGCESPFFSWRTQIDS-PLNGKVTN 49
Query: 186 VSSSGSLQIDVLRDD-----------------------------FRAEPKDTRVASGETA 216
++ +L ++ + + +G+
Sbjct: 50 EGTTSTLTMNPVSFGNEHSYLCTATCESRKLEKGIQVEIYSFPKDPEIHLSGPLEAGKPI 109
Query: 217 LLECGPPKGQPEP--TLHWKKNGQFIDLESS 245
++C P + K + +
Sbjct: 110 TVKCSVADVYPFDRLEIDLLKGDHLMKSQEF 140
>2dlt_A Myosin binding protein C, fast-type; IG-like domain, mybpc2,
structural genomics, NPPSFA; NMR {Mus musculus}
Length = 106
Score = 67.8 bits (166), Expect = 1e-14
Identities = 21/106 (19%), Positives = 35/106 (33%), Gaps = 11/106 (10%)
Query: 35 APPSFVVRPQDQKVGLNGIASFQCVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEG 94
+ D V A F+C + W + G +V P + ++ G
Sbjct: 7 GQLEVLQDIADLTVKAAEQAVFKCEVSDEK-VTGKWYKNGVEV--RPS---KRITISHVG 60
Query: 95 ---TLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVTSVEDTPPP 137
L I V+ ED G + A S + A L ++ + P
Sbjct: 61 RFHKLVIDDVRPEDEGDYTFVPDGYALSLS--AKLNFLEIKVSGPS 104
Score = 46.6 bits (111), Expect = 4e-07
Identities = 20/70 (28%), Positives = 30/70 (42%), Gaps = 7/70 (10%)
Query: 135 PPPIVQVGPSNQTLPLHSVAFLPCQAVGSPPPHIRWYKNGNSLPPEDTRINVSSSG---S 191
++Q ++ T+ A C+ V +WYKNG + P RI +S G
Sbjct: 8 QLEVLQ-DIADLTVKAAEQAVFKCE-VSDEKVTGKWYKNGVEVRP-SKRITISHVGRFHK 64
Query: 192 LQI-DVLRDD 200
L I DV +D
Sbjct: 65 LVIDDVRPED 74
Score = 42.8 bits (101), Expect = 1e-05
Identities = 14/53 (26%), Positives = 23/53 (43%), Gaps = 4/53 (7%)
Query: 201 FRAEPKDTRVASGETALLECGPPKGQPEPTLHWKKNGQFIDLESSKRVSILGD 253
+ D V + E A+ +C + T W KNG ++ SKR++I
Sbjct: 11 VLQDIADLTVKAAEQAVFKC--EVSDEKVTGKWYKNGV--EVRPSKRITISHV 59
Score = 32.0 bits (73), Expect = 0.063
Identities = 8/42 (19%), Positives = 12/42 (28%), Gaps = 5/42 (11%)
Query: 2 ITEVKKSDEGKYQCYVQNMVGERETKPALLTVHAPPSFVVRP 43
I +V+ DEG Y ++ V P
Sbjct: 67 IDDVRPEDEGDYTFVPDGYALSLS-----AKLNFLEIKVSGP 103
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse;
HET: NAG BMA MAN; 3.25A {Homo sapiens}
Length = 440
Score = 71.7 bits (176), Expect = 2e-14
Identities = 30/102 (29%), Positives = 38/102 (37%), Gaps = 5/102 (4%)
Query: 36 PPSFVVRPQDQKVGLNGIASFQCVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGT 95
P V P D V A +C A S SV W V+ G + V +GT
Sbjct: 341 APVIVEPPADLNVTEGMAAELKCRASTSL-TSVSWITPNGTVMT-HGAYKVRIAVLSDGT 398
Query: 96 LRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVTSVEDTPPP 137
L V +D G + C + G+TT A L VT T
Sbjct: 399 LNFTNVTVQDTGMYTCMVSNSVGNTTASATLNVTG---THHH 437
Score = 47.8 bits (114), Expect = 2e-06
Identities = 19/83 (22%), Positives = 32/83 (38%), Gaps = 6/83 (7%)
Query: 123 RAFLQVTSVEDT-PPPIVQVGPSNQTLPLHSVAFLPCQAVGSPPPHIRWYK-NGNSLPP- 179
R ++ T P++ P++ + A L C+A + + W NG +
Sbjct: 327 RYIGELDQNYFTCYAPVIVEPPADLNVTEGMAAELKCRA-STSLTSVSWITPNGTVMTHG 385
Query: 180 -EDTRINVSSSGSLQI-DVLRDD 200
RI V S G+L +V D
Sbjct: 386 AYKVRIAVLSDGTLNFTNVTVQD 408
Score = 39.0 bits (91), Expect = 0.001
Identities = 14/40 (35%), Positives = 14/40 (35%), Gaps = 2/40 (5%)
Query: 1 MITEVKKSDEGKYQCYVQNMVGERETKPALLTVHA-PPSF 39
T V D G Y C V N VG T A L V
Sbjct: 400 NFTNVTVQDTGMYTCMVSNSVGNT-TASATLNVTGTHHHH 438
Score = 35.9 bits (83), Expect = 0.012
Identities = 14/52 (26%), Positives = 22/52 (42%), Gaps = 4/52 (7%)
Query: 204 EPKDTRVASGETALLECGPPKGQPEPTLHWKK-NGQFIDLESSK-RVSILGD 253
P D V G A L+C ++ W NG + + K R+++L D
Sbjct: 347 PPADLNVTEGMAAELKC--RASTSLTSVSWITPNGTVMTHGAYKVRIAVLSD 396
>3so5_A LIG-3, leucine-rich repeats and immunoglobulin-like DOMA protein 3;
structural genomics, joint center for struct genomics,
JCSG; HET: MLY MSE; 1.70A {Mus musculus}
Length = 112
Score = 67.0 bits (163), Expect = 3e-14
Identities = 22/101 (21%), Positives = 35/101 (34%), Gaps = 9/101 (8%)
Query: 37 PSFVVRPQDQKVGLNGIASFQCVAEGSPLPSVFWT--------QEGSQVLMFPGNAYGHL 88
P V+P+ Q SF C A S + + Q+ A G
Sbjct: 11 PQITVQPETQSAIXGSDVSFTCSAASSSDSPMTFAWXXDNEALQDAEMENYAHLRAQGGE 70
Query: 89 HVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTT-VRAFLQV 128
+ LR++ V+ G + C + GS+ V A L +
Sbjct: 71 LMEYTTILRLRNVEFTSEGXYQCVISNHFGSSYSVXAXLTI 111
Score = 47.0 bits (111), Expect = 4e-07
Identities = 12/63 (19%), Positives = 18/63 (28%), Gaps = 2/63 (3%)
Query: 131 VEDTPPPIVQVGPSNQTLPLHSVAFLPCQAVGSPPP--HIRWYKNGNSLPPEDTRINVSS 188
+D P P + V P Q+ S C A S W + +L +
Sbjct: 5 CDDFPXPQITVQPETQSAIXGSDVSFTCSAASSSDSPMTFAWXXDNEALQDAEMENYAHL 64
Query: 189 SGS 191
Sbjct: 65 RAQ 67
Score = 42.4 bits (99), Expect = 2e-05
Identities = 11/34 (32%), Positives = 18/34 (52%)
Query: 1 MITEVKKSDEGKYQCYVQNMVGERETKPALLTVH 34
+ V+ + EG YQC + N G + A LT++
Sbjct: 79 RLRNVEFTSEGXYQCVISNHFGSSYSVXAXLTIN 112
Score = 31.6 bits (71), Expect = 0.087
Identities = 4/43 (9%), Positives = 11/43 (25%), Gaps = 3/43 (6%)
Query: 201 FRAEPKDTRVASGETALLECGPPKGQPEPTLH--WKKNGQFID 241
+P+ G C + + W + + +
Sbjct: 13 ITVQPETQSAIXGSDVSFTCS-AASSSDSPMTFAWXXDNEALQ 54
>2dm7_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} PDB: 2edl_A
2edw_A 2gqh_A 2edt_A 2edq_A 2edr_A
Length = 108
Score = 66.6 bits (163), Expect = 3e-14
Identities = 23/109 (21%), Positives = 38/109 (34%), Gaps = 17/109 (15%)
Query: 35 APPSFVVRPQDQKVGLNGIASFQCVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEG 94
P F + ++ A+ QC E S + V W + + G + Q+G
Sbjct: 7 GPARFTQDLKTKEASEGATATLQC--ELSKVAPVEWKKGPETL-----RDGGRYSLKQDG 59
Query: 95 ---TLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVTSVEDTPPPIVQ 140
L+I + DAG + C + G A L +V P +
Sbjct: 60 TRCELQIHDLSVADAGEYSC----MCGQERTSATL---TVRALPARFTE 101
Score = 46.6 bits (111), Expect = 4e-07
Identities = 17/76 (22%), Positives = 26/76 (34%), Gaps = 8/76 (10%)
Query: 129 TSVEDTPPPIVQVGPSNQTLPLHSVAFLPCQAVGSPPPHIRWYKNGNSLPPEDTRINVSS 188
+S P Q + + A L C+ S + W K +L R ++
Sbjct: 2 SSGSSGPARFTQ-DLKTKEASEGATATLQCEL--SKVAPVEWKKGPETLRD-GGRYSLKQ 57
Query: 189 SG---SLQI-DVLRDD 200
G LQI D+ D
Sbjct: 58 DGTRCELQIHDLSVAD 73
Score = 45.4 bits (108), Expect = 1e-06
Identities = 14/54 (25%), Positives = 21/54 (38%), Gaps = 5/54 (9%)
Query: 200 DFRAEPKDTRVASGETALLECGPPKGQPEPTLHWKKNGQFIDLESSKRVSILGD 253
F + K + G TA L+C + + WKK + L R S+ D
Sbjct: 10 RFTQDLKTKEASEGATATLQC---ELSKVAPVEWKKGPE--TLRDGGRYSLKQD 58
Score = 39.7 bits (93), Expect = 1e-04
Identities = 14/42 (33%), Positives = 20/42 (47%), Gaps = 5/42 (11%)
Query: 2 ITEVKKSDEGKYQCYVQNMVGERETKPALLTVHAPPSFVVRP 43
I ++ +D G+Y C M G+ T A LTV A P+
Sbjct: 66 IHDLSVADAGEYSC----MCGQERTS-ATLTVRALPARFTEG 102
>2k1m_A Myosin-binding protein C, cardiac-type; IG-I domain, cardiac
muscle, hypertrophic cardiomyopathy, actin-binding, cell
adhesion, disease mutation; NMR {Homo sapiens}
Length = 95
Score = 65.8 bits (161), Expect = 4e-14
Identities = 24/98 (24%), Positives = 40/98 (40%), Gaps = 13/98 (13%)
Query: 35 APPSFVVRPQDQKVGLNGIASFQCVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEG 94
+F +P+ +V A F+ E V W + GS + +A + EG
Sbjct: 7 PVSAFSKKPRSVEVAAGSPAVFEAETER-AGVKVRWQRGGSDI-----SASNKYGLATEG 60
Query: 95 ---TLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVT 129
TL ++ V D G + +AGS+ V+ L+V
Sbjct: 61 TRHTLTVREVGPADQGSYAV----IAGSSKVKFDLKVI 94
Score = 49.3 bits (118), Expect = 4e-08
Identities = 11/71 (15%), Positives = 26/71 (36%), Gaps = 6/71 (8%)
Query: 134 TPPPIVQVGPSNQTLPLHSVAFLPCQAVGSPPPHIRWYKNGNSLPPEDTRINVSSSG--- 190
P P + + S A + +RW + G+ + + + +++ G
Sbjct: 6 KPVSAFSKKPRSVEVAAGSPAVFEAE-TERAGVKVRWQRGGSDISASN-KYGLATEGTRH 63
Query: 191 SLQI-DVLRDD 200
+L + +V D
Sbjct: 64 TLTVREVGPAD 74
Score = 45.8 bits (109), Expect = 6e-07
Identities = 11/54 (20%), Positives = 24/54 (44%), Gaps = 4/54 (7%)
Query: 200 DFRAEPKDTRVASGETALLECGPPKGQPEPTLHWKKNGQFIDLESSKRVSILGD 253
F +P+ VA+G A+ E + + W++ G D+ +S + + +
Sbjct: 10 AFSKKPRSVEVAAGSPAVFEAET--ERAGVKVRWQRGGS--DISASNKYGLATE 59
Score = 30.4 bits (69), Expect = 0.19
Identities = 9/32 (28%), Positives = 14/32 (43%), Gaps = 5/32 (15%)
Query: 2 ITEVKKSDEGKYQCYVQNMVGERETKPALLTV 33
+ EV +D+G Y + G + K L V
Sbjct: 67 VREVGPADQGSYAV----IAGSSKVK-FDLKV 93
>2dav_A SLOW MYBP-C, myosin-binding protein C, SLOW-type; IG domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
b.1.1.4
Length = 126
Score = 65.8 bits (160), Expect = 1e-13
Identities = 23/121 (19%), Positives = 40/121 (33%), Gaps = 11/121 (9%)
Query: 35 APPSFVVRPQDQKVGLNGIASFQCVAEGSPL---PSVFWTQEGSQVLMFPGNAYGHLHVT 91
+ F+ +PQ V + +F + L P++ W + L + L T
Sbjct: 6 SGILFIEKPQGGTVKVGEDITFIAKVKAEDLLRKPTIKWFKGKWMDLASKAGKHLQLKET 65
Query: 92 -------QEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVTSVEDTPPPIVQVGPS 144
++I + AG + C + L+V T P I GPS
Sbjct: 66 FERHSRVYTFEMQIIKAKDNFAGNYRCEVTYKDKFDSCSFDLEVHESTGTTPNI-DSGPS 124
Query: 145 N 145
+
Sbjct: 125 S 125
Score = 41.9 bits (98), Expect = 3e-05
Identities = 9/37 (24%), Positives = 12/37 (32%), Gaps = 1/37 (2%)
Query: 2 ITEVKKSDEGKYQCYVQNMVGERETKPALLTVHAPPS 38
I + K + G Y+C V L VH
Sbjct: 79 IIKAKDNFAGNYRCEVTYKDKFDSCS-FDLEVHESTG 114
Score = 37.3 bits (86), Expect = 0.001
Identities = 6/63 (9%), Positives = 16/63 (25%), Gaps = 3/63 (4%)
Query: 132 EDTPPPIVQVGPSNQTLPLHSVAFLPCQAVGSP---PPHIRWYKNGNSLPPEDTRINVSS 188
+ + P T+ + + P I+W+K ++
Sbjct: 3 SGSSGILFIEKPQGGTVKVGEDITFIAKVKAEDLLRKPTIKWFKGKWMDLASKAGKHLQL 62
Query: 189 SGS 191
+
Sbjct: 63 KET 65
Score = 33.8 bits (77), Expect = 0.018
Identities = 10/54 (18%), Positives = 19/54 (35%), Gaps = 5/54 (9%)
Query: 201 FRAEPKDTRVASGETALLEC---GPPKGQPEPTLHWKKNGQF-IDLESSKRVSI 250
F +P+ V GE + PT+ W K + ++ K + +
Sbjct: 10 FIEKPQGGTVKVGEDITFIAKVKAEDLLRK-PTIKWFKGKWMDLASKAGKHLQL 62
>1wwb_X Protein (brain derived neurotrophic factor receptor TRKB); TRK
receptor, receptor tyrosine kinase, 3D-domain swapping,
transferase; 2.10A {Homo sapiens} SCOP: b.1.1.4 PDB:
1hcf_X
Length = 103
Score = 64.8 bits (158), Expect = 1e-13
Identities = 16/109 (14%), Positives = 32/109 (29%), Gaps = 10/109 (9%)
Query: 33 VHAPPSFVVRPQDQKVGLNGIASFQCVAEGSPLPSVFWTQEGSQVLM---FPGNAYGHLH 89
VH P+ + + +G+P P++ W G+ + + H
Sbjct: 1 VHFAPTIT-FLESPTSDHH--WCIPFTVKGNPKPALQWFYNGAILNESKYICTKIHVTNH 57
Query: 90 VTQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVTSVEDTPPPI 138
G L++ + G + A + G + P I
Sbjct: 58 TEYHGCLQLDNPTHMNNGDYTLIAKNEYGKDEKQISAHFMG----WPGI 102
Score = 45.1 bits (107), Expect = 1e-06
Identities = 17/75 (22%), Positives = 27/75 (36%), Gaps = 14/75 (18%)
Query: 135 PPPIVQVGPSNQTLPLHSVAFLPCQAVGSPPPHIRWYKNGNSLPPEDTRINVSS------ 188
P I + + T H +P G+P P ++W+ NG L E I
Sbjct: 4 APTITFL--ESPTSDHHWC--IPFTVKGNPKPALQWFYNGAIL-NESKYICTKIHVTNHT 58
Query: 189 --SGSLQI-DVLRDD 200
G LQ+ + +
Sbjct: 59 EYHGCLQLDNPTHMN 73
Score = 38.2 bits (89), Expect = 4e-04
Identities = 6/39 (15%), Positives = 11/39 (28%), Gaps = 1/39 (2%)
Query: 1 MITEVKKSDEGKYQCYVQNMVGERETKPALLTVHAPPSF 39
+ + G Y +N G+ + K P
Sbjct: 65 QLDNPTHMNNGDYTLIAKNEYGK-DEKQISAHFMGWPGI 102
Score = 34.7 bits (80), Expect = 0.007
Identities = 12/41 (29%), Positives = 15/41 (36%), Gaps = 3/41 (7%)
Query: 210 VASGETALLECGPPKGQPEPTLHWKKNGQFIDLESSKRVSI 250
S + KG P+P L W NG L SK +
Sbjct: 13 PTSDHHWCIPF-TVKGNPKPALQWFYNGA--ILNESKYICT 50
>2edf_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 103
Score = 64.2 bits (157), Expect = 2e-13
Identities = 23/105 (21%), Positives = 36/105 (34%), Gaps = 13/105 (12%)
Query: 35 APPSFVVRPQDQKVGLNGIASFQCVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEG 94
P + + +DQ V +C + P V W ++ + Y V EG
Sbjct: 7 GPAAIIKPLEDQWVAPGEDVELRCELSRAGTP-VHWLKDRKAI--RKSQKY---DVVCEG 60
Query: 95 ---TLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVTSVEDTPP 136
L I+G +DAG + C + + A L V P
Sbjct: 61 TMAMLVIRGASLKDAGEYTCEVEASKST----ASLHVEEKASGPS 101
Score = 45.4 bits (108), Expect = 1e-06
Identities = 12/71 (16%), Positives = 24/71 (33%), Gaps = 6/71 (8%)
Query: 134 TPPPIVQVGPSNQTLPLHSVAFLPCQAVGSPPPHIRWYKNGNSLPPEDTRINVSSSG--- 190
+ P + +Q + L C+ + P + W K+ ++ + +V G
Sbjct: 6 SGPAAIIKPLEDQWVAPGEDVELRCELSRAGTP-VHWLKDRKAIRKSQ-KYDVVCEGTMA 63
Query: 191 SLQI-DVLRDD 200
L I D
Sbjct: 64 MLVIRGASLKD 74
Score = 38.4 bits (90), Expect = 3e-04
Identities = 11/56 (19%), Positives = 21/56 (37%), Gaps = 10/56 (17%)
Query: 201 FRAEPKDTRVASGETALLEC---GPPKGQPEPTLHWKKNGQFIDLESSKRVSILGD 253
+D VA GE L C +HW K+ + + S++ ++ +
Sbjct: 11 IIKPLEDQWVAPGEDVELRCELSRAG-----TPVHWLKDRK--AIRKSQKYDVVCE 59
Score = 35.0 bits (81), Expect = 0.005
Identities = 10/37 (27%), Positives = 12/37 (32%), Gaps = 5/37 (13%)
Query: 2 ITEVKKSDEGKYQCYVQNMVGERETKPALLTVHAPPS 38
I D G+Y C V+ A L V S
Sbjct: 67 IRGASLKDAGEYTCEVEASKST-----ASLHVEEKAS 98
>2cpc_A KIAA0657 protein; immunoglobulin domain, IG domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 113
Score = 64.4 bits (157), Expect = 2e-13
Identities = 25/120 (20%), Positives = 42/120 (35%), Gaps = 19/120 (15%)
Query: 31 LTVHAPPSFVVRP---QDQKVGLNGIASFQCVAEGSPLPSVFWTQEGSQVLMFPGNAYGH 87
+ S++V P C P V WT++G +V A
Sbjct: 5 SSGTDVSSWIVYPSGKVYVAAVRLERVVLTCEL-CRPWAEVRWTKDGEEV--VESPAL-- 59
Query: 88 LHVTQEG---TLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVTSVEDTPPPIVQVGPS 144
+ +E L + VQ ED+G ++C + + +V + P I+ GPS
Sbjct: 60 -LLQKEDTVRRLVLPAVQLEDSGEYLC----EIDDESASFTV---TVTEPPVRIIYSGPS 111
Score = 44.4 bits (105), Expect = 3e-06
Identities = 15/77 (19%), Positives = 25/77 (32%), Gaps = 7/77 (9%)
Query: 129 TSVEDTPPPIVQV-GPSNQTLPLHSVAFLPCQAVGSPPPHIRWYKNGNSLPPEDTRINVS 187
+S D IV G L C+ + P +RW K+G + + +
Sbjct: 5 SSGTDVSSWIVYPSGKVYVAAVRLERVVLTCE-LCRPWAEVRWTKDGEEVVE-SPALLLQ 62
Query: 188 SSG---SLQI-DVLRDD 200
L + V +D
Sbjct: 63 KEDTVRRLVLPAVQLED 79
Score = 41.3 bits (97), Expect = 4e-05
Identities = 9/43 (20%), Positives = 17/43 (39%), Gaps = 5/43 (11%)
Query: 2 ITEVKKSDEGKYQCYVQNMVGERETKPALLTVHAPPSFVVRPQ 44
+ V+ D G+Y C + + +TV PP ++
Sbjct: 72 LPAVQLEDSGEYLC----EIDDESAS-FTVTVTEPPVRIIYSG 109
Score = 40.5 bits (95), Expect = 7e-05
Identities = 8/53 (15%), Positives = 20/53 (37%), Gaps = 4/53 (7%)
Query: 201 FRAEPKDTRVASGETALLECGPPKGQPEPTLHWKKNGQFIDLESSKRVSILGD 253
+ + E +L C +P + W K+G+ ++ S + + +
Sbjct: 16 YPSGKVYVAAVRLERVVLTC--ELCRPWAEVRWTKDGE--EVVESPALLLQKE 64
>1waa_A Titin; metal binding protein, calmodulin-binding, cytoskeleton,
immunoglobulin domain, muscle protein, phosphorylation,
repeat; 1.80A {Homo sapiens} PDB: 1waa_E 1waa_F 1tit_A
1tiu_A 2rq8_A
Length = 93
Score = 63.5 bits (155), Expect = 3e-13
Identities = 17/100 (17%), Positives = 29/100 (29%), Gaps = 13/100 (13%)
Query: 35 APPSFVVRPQDQKVGLNGIASFQCVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEG 94
A +V + A F+ P W +G + A + ++G
Sbjct: 4 ALIEVEKPLYGVEVFVGETAHFEIEL-SEPDVHGQWKLKGQPL-----AASPDCEIIEDG 57
Query: 95 ---TLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVTSV 131
L + Q G A +T A L+V +
Sbjct: 58 KKHILILHNCQLGMTGEVSF----QAANTKSAANLKVKEL 93
Score = 46.5 bits (111), Expect = 3e-07
Identities = 15/53 (28%), Positives = 19/53 (35%), Gaps = 4/53 (7%)
Query: 201 FRAEPKDTRVASGETALLECGPPKGQPEPTLHWKKNGQFIDLESSKRVSILGD 253
V GETA E +P+ WK GQ L +S I+ D
Sbjct: 8 VEKPLYGVEVFVGETAHFEIEL--SEPDVHGQWKLKGQ--PLAASPDCEIIED 56
Score = 43.8 bits (104), Expect = 3e-06
Identities = 8/70 (11%), Positives = 18/70 (25%), Gaps = 7/70 (10%)
Query: 135 PPPIVQVGPSNQTLPLHSVAFLPCQAVGSPPPHIRWYKNGNSLPPEDTRINVSSSG---S 191
+ + + + A + + P H +W G L + G
Sbjct: 5 LIEVEK-PLYGVEVFVGETAHFEIE-LSEPDVHGQWKLKGQPLAASP-DCEIIEDGKKHI 61
Query: 192 LQI-DVLRDD 200
L + +
Sbjct: 62 LILHNCQLGM 71
Score = 28.0 bits (63), Expect = 1.2
Identities = 4/34 (11%), Positives = 9/34 (26%), Gaps = 5/34 (14%)
Query: 2 ITEVKKSDEGKYQCYVQNMVGERETKPALLTVHA 35
+ + G+ ++ A L V
Sbjct: 64 LHNCQLGMTGEVSF----QAANTKSA-ANLKVKE 92
>1fnl_A Low affinity immunoglobulin gamma FC region receptor III-B; beta
sandwich, immunoglobulin-like, immune system receptor;
1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1e4j_A
1e4k_C* 1t83_C* 1t89_C* 3ay4_C*
Length = 175
Score = 65.3 bits (159), Expect = 4e-13
Identities = 21/121 (17%), Positives = 38/121 (31%), Gaps = 15/121 (12%)
Query: 2 ITEVKKSDEGKYQCYVQNMVGERETKPALLTVHAPPSFVVRPQDQKVGLNGIASFQCVA- 60
I +D G+Y+C + P L VH + P+ +C +
Sbjct: 58 IDAATVNDSGEYRCQTNLSTL---SDPVQLEVHIGWLLLQAPRWV-FKEEDPIHLRCHSW 113
Query: 61 EGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGST 120
+ + L V + Q G F I +D+G + C L + +
Sbjct: 114 KNTALHKVTYLQNGKDRKYFH----------HNSDFHIPKATLKDSGSYFCRGLVGSKNV 163
Query: 121 T 121
+
Sbjct: 164 S 164
Score = 65.3 bits (159), Expect = 4e-13
Identities = 20/136 (14%), Positives = 42/136 (30%), Gaps = 19/136 (13%)
Query: 131 VEDTPPPIVQVGPSNQTLPLHSVAFLPCQAVGSPPPH-IRWYKNGNSLPPEDTRINVSS- 188
ED P +V + P ++ L CQ SP + +W+ N + + + + + +
Sbjct: 2 TEDLPKAVVFLEPQWYSVLEKDSVTLKCQGAYSPEDNSTQWFHNESLISSQASSYFIDAA 61
Query: 189 -----------------SGSLQIDVLRDDFRAEPKDTRVASGETALLECGPPKGQPEPTL 231
S +Q++V + + L C K +
Sbjct: 62 TVNDSGEYRCQTNLSTLSDPVQLEVHIGWLLLQAPRWVFKEEDPIHLRCHSWKNTALHKV 121
Query: 232 HWKKNGQFIDLESSKR 247
+ +NG+
Sbjct: 122 TYLQNGKDRKYFHHNS 137
Score = 61.0 bits (148), Expect = 1e-11
Identities = 29/166 (17%), Positives = 49/166 (29%), Gaps = 29/166 (17%)
Query: 32 TVHAPPSFV-VRPQDQKVGLNGIASFQCVAEGSPLP-SVFWTQEGSQVLMFPGNAYGHLH 89
T P + V + PQ V + +C SP S W S +
Sbjct: 2 TEDLPKAVVFLEPQWYSVLEKDSVTLKCQGAYSPEDNSTQWFHNESLIS----------- 50
Query: 90 VTQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVTSVEDTPPPIVQVGPSNQTLP 149
+Q + I D+G + C S V+ L+V ++Q P
Sbjct: 51 -SQASSYFIDAATVNDSGEYRCQTNLSTLSDPVQ--LEVHI----GWLLLQA-PRWVFKE 102
Query: 150 LHSVAFLPCQAVGSPPPH-IRWYKNGNSLPPEDTRINVSSSGSLQI 194
+ L C + + H + + +NG + I
Sbjct: 103 EDPIH-LRCHSWKNTALHKVTYLQNGKDRKY------FHHNSDFHI 141
Score = 35.2 bits (81), Expect = 0.011
Identities = 6/32 (18%), Positives = 11/32 (34%)
Query: 2 ITEVKKSDEGKYQCYVQNMVGERETKPALLTV 33
I + D G Y C ++ +T+
Sbjct: 141 IPKATLKDSGSYFCRGLVGSKNVSSETVNITI 172
>2edk_A Myosin-binding protein C, fast-type; IG fold, fast MYBP-C,
C-protein, skeletal muscle fast- isoform, MYBPCF,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 101
Score = 63.1 bits (154), Expect = 5e-13
Identities = 17/97 (17%), Positives = 28/97 (28%), Gaps = 9/97 (9%)
Query: 35 APPSFVVRPQDQKVGLNGIASFQCVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEG 94
P V +DQ+V + V W + G ++ ++G
Sbjct: 7 GPVLIVTPLEDQQVFVGDRVEMAVEV-SEEGAQVMWMKNGVELTREDSFK-ARYRFKKDG 64
Query: 95 ---TLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQV 128
L V +ED G + + A L V
Sbjct: 65 KRHILIFSDVVQEDRGRYQV----ITNGGQCEAELIV 97
Score = 50.8 bits (122), Expect = 1e-08
Identities = 19/79 (24%), Positives = 29/79 (36%), Gaps = 9/79 (11%)
Query: 129 TSVEDTPPPIVQVGPSNQTLPLHSVAFLPCQAVGSPPPHIRWYKNGNSLPPED---TRIN 185
+S P IV +Q + + + + V + W KNG L ED R
Sbjct: 2 SSGSSGPVLIVT-PLEDQQVFVGDRVEMAVE-VSEEGAQVMWMKNGVELTREDSFKARYR 59
Query: 186 VSSSG---SLQI-DVLRDD 200
G L DV+++D
Sbjct: 60 FKKDGKRHILIFSDVVQED 78
Score = 39.2 bits (92), Expect = 1e-04
Identities = 9/55 (16%), Positives = 17/55 (30%), Gaps = 4/55 (7%)
Query: 201 FRAEPKDTRVASGETALLECGPPKGQPEPTLHWKKNGQFI--DLESSKRVSILGD 253
+D +V G+ + + + W KNG + + R D
Sbjct: 11 IVTPLEDQQVFVGDRVEMAVEV--SEEGAQVMWMKNGVELTREDSFKARYRFKKD 63
Score = 31.9 bits (73), Expect = 0.051
Identities = 8/35 (22%), Positives = 15/35 (42%), Gaps = 5/35 (14%)
Query: 2 ITEVKKSDEGKYQCYVQNMVGERETKPALLTVHAP 36
++V + D G+YQ + + + A L V
Sbjct: 71 FSDVVQEDRGRYQV----ITNGGQCE-AELIVEEK 100
>1dr9_A B7-1 (CD80), T lymphocyte activation antigen; IG superfamily,
immune system; HET: NAG; 3.00A {Homo sapiens} SCOP:
b.1.1.1 b.1.1.3 PDB: 1i8l_A*
Length = 201
Score = 65.8 bits (160), Expect = 5e-13
Identities = 27/153 (17%), Positives = 48/153 (31%), Gaps = 15/153 (9%)
Query: 54 ASFQCVAEGSPL----PSVFWTQEGSQVLMFPGNAY-------GHLHVTQEG--TLRIQG 100
A+ C S ++W +E VL ++ I
Sbjct: 12 ATLSCGHNVSVEELAQTRIYWQKEKKMVLTMMSGDMNIWPEYKNRTIFDITNNLSIVILA 71
Query: 101 VQKEDAGFFVCSALSVAGSTTVRAFLQVTSVEDTPPPIVQVGPSNQTLPLHSVAFLPCQA 160
++ D G + C L R L ++ S+ +P ++ + C
Sbjct: 72 LRPSDEGTYECVVLKYEKDAFKREHLAEVTLSVKADF-PTPSISDFEIPTSNIRRIICST 130
Query: 161 VG-SPPPHIRWYKNGNSLPPEDTRINVSSSGSL 192
G P PH+ W +NG L +T ++ L
Sbjct: 131 SGGFPEPHLSWLENGEELNAINTTVSQDPETEL 163
Score = 49.2 bits (117), Expect = 2e-07
Identities = 20/119 (16%), Positives = 35/119 (29%), Gaps = 10/119 (8%)
Query: 2 ITEVKKSDEGKYQCYVQNMVGERETKPALLTVH---APPSFVVRPQDQKVGLNGIASFQC 58
I ++ SDEG Y+C V + + L V D ++ + I C
Sbjct: 69 ILALRPSDEGTYECVVLKYEKDAFKREHLAEVTLSVKADFPTPSISDFEIPTSNIRRIIC 128
Query: 59 VAEG-SPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQG---VQKEDAGFFVCSA 113
G P P + W + G ++ + + F+C
Sbjct: 129 STSGGFPEPHLSWLENGEEL---NAINTTVSQDPETELYAVSSKLDFNMTTNHSFMCLI 184
Score = 33.0 bits (75), Expect = 0.060
Identities = 13/62 (20%), Positives = 21/62 (33%)
Query: 179 PEDTRINVSSSGSLQIDVLRDDFRAEPKDTRVASGETALLECGPPKGQPEPTLHWKKNGQ 238
E + + V D D + + + C G PEP L W +NG+
Sbjct: 87 YEKDAFKREHLAEVTLSVKADFPTPSISDFEIPTSNIRRIICSTSGGFPEPHLSWLENGE 146
Query: 239 FI 240
+
Sbjct: 147 EL 148
Score = 28.8 bits (64), Expect = 1.8
Identities = 12/62 (19%), Positives = 24/62 (38%), Gaps = 5/62 (8%)
Query: 210 VASGETALLECGPPKGQ---PEPTLHWKKNGQFIDLESSKRVSILGDPWFDSRRSRSIFG 266
E A L CG + ++W+K + + S ++I P + +R I
Sbjct: 6 KEVKEVATLSCGHNVSVEELAQTRIYWQKEKKMVLTMMSGDMNI--WPEYKNRTIFDITN 63
Query: 267 SV 268
++
Sbjct: 64 NL 65
>1ccz_A Protein (CD58); LFA-3, glycoprotein; HET: NAG; 1.80A {Homo sapiens}
SCOP: b.1.1.1 b.1.1.3 PDB: 1ci5_A 1qa9_B
Length = 171
Score = 64.9 bits (158), Expect = 5e-13
Identities = 22/134 (16%), Positives = 43/134 (32%), Gaps = 20/134 (14%)
Query: 59 VAEGSPLPSVFWTQEGSQVLMFPGNAY--------GHLHVTQEGTLRIQGVQKEDAGFFV 110
V PL V W ++ +V + + T G+L I + D +
Sbjct: 17 VPSNVPLKEVLWKKQKDKVAELENSEFRAFSSFKNRVYLDTVSGSLTIYNLTSSDEDEYE 76
Query: 111 CSALSVAGSTTVRAFLQVTSVEDTPPPIVQVGPSNQTLPLHSVAFLPCQAVGSPPPHIRW 170
+ ++ + L V +E P++ SN T L C+ + ++
Sbjct: 77 MESPNITDTMKFF--LYV--LEMVSKPMIYWECSNAT--------LTCEVLEGTDVELKL 124
Query: 171 YKNGNSLPPEDTRI 184
Y+ L +
Sbjct: 125 YQGKEHLRSLRQKT 138
Score = 44.9 bits (106), Expect = 5e-06
Identities = 18/112 (16%), Positives = 28/112 (25%), Gaps = 21/112 (18%)
Query: 2 ITEVKKSDEGKYQCYVQNMVGERETKPALLTVHAPPSFVVRPQDQKVGLNGIASFQCVAE 61
I + SDE +Y+ N+ + L V S +P N A+ C
Sbjct: 64 IYNLTSSDEDEYEMESPNITDTMKFF---LYVLEMVS---KPMIYWECSN--ATLTCEVL 115
Query: 62 GSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSA 113
+ Q H+ + F C A
Sbjct: 116 EGTDVELKLYQGKE-------------HLRSLRQKTMSYQWTNLRAPFKCKA 154
Score = 30.3 bits (68), Expect = 0.40
Identities = 7/55 (12%), Positives = 12/55 (21%), Gaps = 4/55 (7%)
Query: 205 PKDTRVASGETALLECGPPKGQPEPTLHWKKNGQFIDLESSKRVSILGDPWFDSR 259
+ P P + WKK + + F +R
Sbjct: 2 SQQIYGVVYGNVTFHV--PSNVPLKEVLWKKQKDKVAELENSEFRA--FSSFKNR 52
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein,
neurite growth regulation; HET: NAG BMA; 2.00A {Mus
musculus}
Length = 361
Score = 66.8 bits (163), Expect = 8e-13
Identities = 26/126 (20%), Positives = 43/126 (34%), Gaps = 18/126 (14%)
Query: 42 RPQDQKVGLNGIASFQCVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGV 101
+ + L + +C + + V+ + QVL + G + V + G L + V
Sbjct: 252 KESAWEAHLGDTLTIRCDTKQQGMTKVWVSPSNEQVL--SQGSNGSVSV-RNGDLFFKKV 308
Query: 102 QKEDAGFFVCSALSVAGSTTVRAFLQVTSVEDTPPPIVQVGPSNQTLPLHSVAFLPCQAV 161
Q ED G + C A+ + T+ L+V N TL H
Sbjct: 309 QVEDGGVYTCYAMGETFNETLSVELKV---------------YNFTLHGHHDTLNAAADP 353
Query: 162 GSPPPH 167
S P
Sbjct: 354 WSHPQF 359
Score = 40.2 bits (94), Expect = 4e-04
Identities = 10/38 (26%), Positives = 13/38 (34%), Gaps = 1/38 (2%)
Query: 1 MITEVKKSDEGKYQCYVQNMVGERETKPALLTVHAPPS 38
+V+ D G Y CY ET L V+
Sbjct: 304 FFKKVQVEDGGVYTCYAMGETFN-ETLSVELKVYNFTL 340
Score = 40.2 bits (94), Expect = 5e-04
Identities = 10/84 (11%), Positives = 23/84 (27%), Gaps = 12/84 (14%)
Query: 123 RAFLQVTSVED----TPPPIVQVGPSNQTLPLHSVAFLPCQAVGSPPPHIRWYKNGNSLP 178
+ + S++ TL + C + + +
Sbjct: 235 KKLHNIFSLDFFNCSEYKESAWEAHLGDTLTIR------CDTKQQGMTKVWVSPSNEQVL 288
Query: 179 PEDTRINVS-SSGSLQI-DVLRDD 200
+ + +VS +G L V +D
Sbjct: 289 SQGSNGSVSVRNGDLFFKKVQVED 312
>3sgj_C Human FCG3A receptor; receptor complex, FC receptor, antibody,
immune system; HET: NAG BMA MAN FUC; 2.20A {Homo
sapiens} PDB: 3sgk_C*
Length = 204
Score = 64.9 bits (158), Expect = 8e-13
Identities = 29/153 (18%), Positives = 48/153 (31%), Gaps = 22/153 (14%)
Query: 2 ITEVKKSDEGKYQCYVQNMVGERETKPALLTVHAPPSFVVRPQDQKVGLNGIASFQCVAE 61
I D G+Y+C Q + P L VH + P+ +C +
Sbjct: 58 IDAATVDDSGEYRCQTQLSTL---SDPVQLEVHIGWLLLQAPRWV-FKEEDPIHLRCHSW 113
Query: 62 -GSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGST 120
+ L V + Q G F N I +D+G + C L + +
Sbjct: 114 KNTALHKVTYLQNGKGRKYFHHN----------SDFYIPKATLKDSGSYFCRGLVGSKNV 163
Query: 121 -------TVRAFLQVTSVEDTPPPIVQVGPSNQ 146
T+ L V+++ PP Q +
Sbjct: 164 SSETVQITITQGLAVSTISSFFPPGYQGKKKKK 196
Score = 61.8 bits (150), Expect = 1e-11
Identities = 20/136 (14%), Positives = 40/136 (29%), Gaps = 19/136 (13%)
Query: 131 VEDTPPPIVQVGPSNQTLPLHSVAFLPCQAVGSPPPH-IRWYKNGNSLPPEDTRINVSS- 188
ED P +V + P + L CQ SP +W+ N + + + + + +
Sbjct: 2 TEDLPKAVVFLEPQWYRVLEKDSVTLKCQGAYSPEDQSTQWFHNESLISSQASSYFIDAA 61
Query: 189 -----------------SGSLQIDVLRDDFRAEPKDTRVASGETALLECGPPKGQPEPTL 231
S +Q++V + + L C K +
Sbjct: 62 TVDDSGEYRCQTQLSTLSDPVQLEVHIGWLLLQAPRWVFKEEDPIHLRCHSWKNTALHKV 121
Query: 232 HWKKNGQFIDLESSKR 247
+ +NG+
Sbjct: 122 TYLQNGKGRKYFHHNS 137
Score = 57.6 bits (139), Expect = 3e-10
Identities = 25/160 (15%), Positives = 46/160 (28%), Gaps = 28/160 (17%)
Query: 37 PSFVVRPQDQKVGLNGIASFQCVAEGSPLP-SVFWTQEGSQVLMFPGNAYGHLHVTQEGT 95
+ PQ +V + +C SP S W S + +Q +
Sbjct: 8 AVVFLEPQWYRVLEKDSVTLKCQGAYSPEDQSTQWFHNESLIS------------SQASS 55
Query: 96 LRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVTSVEDTPPPIVQVGPSNQTLPLHSVAF 155
I +D+G + C S V+ L+V ++ P +
Sbjct: 56 YFIDAATVDDSGEYRCQTQLSTLSDPVQ--LEVHI-----GWLLLQAPRWVFKEEDPI-H 107
Query: 156 LPCQAVGSPPPH-IRWYKNGNSLPPEDTRINVSSSGSLQI 194
L C + + H + + +NG + I
Sbjct: 108 LRCHSWKNTALHKVTYLQNGKGRKY------FHHNSDFYI 141
>1x44_A Myosin-binding protein C, SLOW-type; IG-like domain, SLOW-
type/skeletal muscle SLOW-isoform, structural genomics,
NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4
Length = 103
Score = 62.3 bits (152), Expect = 1e-12
Identities = 19/106 (17%), Positives = 34/106 (32%), Gaps = 13/106 (12%)
Query: 35 APPSFVVRPQDQKVGLNGIASFQCVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEG 94
+ + +D +C +V W + G +++ P + Y + EG
Sbjct: 6 SGIMVTKQLEDTTAYCGERVELECEVSE-DDANVKWFKNGEEIIPGPKSRY---RIRVEG 61
Query: 95 ---TLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVTSVEDTPPP 137
L I+G K DA + + A L V + P
Sbjct: 62 KKHILIIEGATKADAAEYSV----MTTGGQSSAKLSVD--LKSGPS 101
Score = 46.9 bits (112), Expect = 3e-07
Identities = 15/76 (19%), Positives = 27/76 (35%), Gaps = 7/76 (9%)
Query: 130 SVEDTPPPIVQVGPSNQTLPLHSVAFLPCQAVGSPPPHIRWYKNGNSLPPEDT-RINVSS 188
S + + + + T L C+ V +++W+KNG + P R +
Sbjct: 2 SSGSSGIMVTK-QLEDTTAYCGERVELECE-VSEDDANVKWFKNGEEIIPGPKSRYRIRV 59
Query: 189 SG---SLQI-DVLRDD 200
G L I + D
Sbjct: 60 EGKKHILIIEGATKAD 75
Score = 46.2 bits (110), Expect = 6e-07
Identities = 14/53 (26%), Positives = 21/53 (39%), Gaps = 2/53 (3%)
Query: 201 FRAEPKDTRVASGETALLECGPPKGQPEPTLHWKKNGQFIDLESSKRVSILGD 253
+ +DT GE LEC + + + W KNG+ I R I +
Sbjct: 10 VTKQLEDTTAYCGERVELECEV--SEDDANVKWFKNGEEIIPGPKSRYRIRVE 60
Score = 33.5 bits (77), Expect = 0.015
Identities = 10/39 (25%), Positives = 16/39 (41%), Gaps = 7/39 (17%)
Query: 2 ITEVKKSDEGKYQCYVQNMVGERETKPALLTVH--APPS 38
I K+D +Y M ++ A L+V + PS
Sbjct: 68 IEGATKADAAEYSV----MTTGGQSS-AKLSVDLKSGPS 101
>2pet_A Lutheran blood group glycoprotein; immunoglobulin superfamily.,
cell adhesion; 1.70A {Homo sapiens} PDB: 2pf6_A
Length = 231
Score = 64.4 bits (156), Expect = 2e-12
Identities = 29/174 (16%), Positives = 50/174 (28%), Gaps = 22/174 (12%)
Query: 43 PQDQKVGLNGIASFQCVAEGSP-LPSVFWTQ---EGSQVLMFPGNAYGH----------- 87
P +V C G+ + W G++ + G
Sbjct: 7 PPLVEVMRGKSVILDCTPTGTHDHYMLEWFLTDRSGARPRLASAEMQGSELQVTMHDTRG 66
Query: 88 ----LHVTQEGTLRIQGVQKEDAGFFVCSALSV-AGSTTVRAFLQVTSVEDTPPPIVQVG 142
+ +G L + Q D +VC + AG+ A L V + +
Sbjct: 67 RSPPYQLDSQGRLVLAEAQVGDERDYVCVVRAGAAGTAEATARLNVF-AKPEATEVSPNK 125
Query: 143 PSNQTLPLHSVAFLPCQAV-GSPPPHIRWYKNGNSLPPEDTRINVSSSGSLQID 195
+ + + C + G+P P I WY+NG L S +
Sbjct: 126 GTLSVMEDSAQEIATCNSRNGNPAPKITWYRNGQRLEVPVEMNPEGYMTSRTVR 179
Score = 55.2 bits (132), Expect = 3e-09
Identities = 22/128 (17%), Positives = 42/128 (32%), Gaps = 16/128 (12%)
Query: 2 ITEVKKSDEGKYQCYVQNMVGERETKPALLTVHAPPSFVV----RPQDQKVGLNGIASFQ 57
+ E + DE Y C V+ A L V A P + + +
Sbjct: 81 LAEAQVGDERDYVCVVRAGAAGTAEATARLNVFAKPEATEVSPNKGTLSVMEDSAQEIAT 140
Query: 58 CVAE-GSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEG-----------TLRIQGVQKED 105
C + G+P P + W + G ++ + ++ TL ++ + +
Sbjct: 141 CNSRNGNPAPKITWYRNGQRLEVPVEMNPEGYMTSRTVREASGLLSLTSTLYLRLRKDDR 200
Query: 106 AGFFVCSA 113
F C+A
Sbjct: 201 DASFHCAA 208
Score = 30.9 bits (69), Expect = 0.37
Identities = 11/69 (15%), Positives = 17/69 (24%), Gaps = 6/69 (8%)
Query: 205 PKDTRVASGETALLECGPPKGQPEPTLHWKKNGQ------FIDLESSKRVSILGDPWFDS 258
P V G++ +L+C P L W + E +
Sbjct: 7 PPLVEVMRGKSVILDCTPTGTHDHYMLEWFLTDRSGARPRLASAEMQGSELQVTMHDTRG 66
Query: 259 RRSRSIFGS 267
R S
Sbjct: 67 RSPPYQLDS 75
>2yuz_A Myosin-binding protein C, SLOW-type; immunoglobulin domain,
SLOW-type myosin-binding protein C, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 100
Score = 61.2 bits (149), Expect = 2e-12
Identities = 24/99 (24%), Positives = 35/99 (35%), Gaps = 12/99 (12%)
Query: 35 APPSFVVRPQDQKVGLNGIASFQCVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEG 94
+ + DQ V L +C + WT+ G V L V Q+G
Sbjct: 6 SGLKILTPLTDQTVNLGKEICLKCEISENIPGK--WTKNGLPV-----QESDRLKVVQKG 58
Query: 95 ---TLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVTS 130
L I ED G +V + A + T+ A + V S
Sbjct: 59 RIHKLVIANALTEDEGDYVFAP--DAYNVTLPAKVHVIS 95
Score = 48.5 bits (116), Expect = 7e-08
Identities = 20/75 (26%), Positives = 32/75 (42%), Gaps = 8/75 (10%)
Query: 130 SVEDTPPPIVQVGPSNQTLPLHSVAFLPCQAVGSPPPHIRWYKNGNSLPPEDTRINVSSS 189
S + I+ ++QT+ L L C+ + P +W KNG + D R+ V
Sbjct: 2 SSGSSGLKILT-PLTDQTVNLGKEICLKCEISENIPG--KWTKNGLPVQESD-RLKVVQK 57
Query: 190 G---SLQI-DVLRDD 200
G L I + L +D
Sbjct: 58 GRIHKLVIANALTED 72
Score = 41.9 bits (99), Expect = 2e-05
Identities = 11/53 (20%), Positives = 19/53 (35%), Gaps = 5/53 (9%)
Query: 201 FRAEPKDTRVASGETALLECGPPKGQPEPTLHWKKNGQFIDLESSKRVSILGD 253
D V G+ L+C + W KNG ++ S R+ ++
Sbjct: 10 ILTPLTDQTVNLGKEICLKC---EISENIPGKWTKNGL--PVQESDRLKVVQK 57
Score = 36.2 bits (84), Expect = 0.002
Identities = 11/37 (29%), Positives = 13/37 (35%), Gaps = 3/37 (8%)
Query: 2 ITEVKKSDEGKYQCYVQNMVGERETKPALLTVHAPPS 38
I DEG Y T PA + V + PS
Sbjct: 65 IANALTEDEGDYVFAPDA---YNVTLPAKVHVISGPS 98
>3cx2_A Myosin-binding protein C, cardiac-type; protonation states,
actin-binding, cardiomyopathy, cell adhesion, disease
mutation, immunoglobulin domain; 1.30A {Homo sapiens}
PDB: 2v6h_A 2avg_A
Length = 108
Score = 59.6 bits (144), Expect = 1e-11
Identities = 24/104 (23%), Positives = 35/104 (33%), Gaps = 10/104 (9%)
Query: 36 PPSFVVRPQDQKVGLNGIASFQCVAEGSPL---PSVFWTQEGSQVLMFPGNAYGHLHVTQ 92
FV+RPQD +V + G +F G+ L P V W + L + LH +
Sbjct: 4 IGLFVMRPQDGEVTVGGSITFSARVAGASLLKPPVVKWFKGKWVDLSSKVGQHLQLHDSY 63
Query: 93 E-------GTLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVT 129
+ L I Q G + C + L V
Sbjct: 64 DRASKVYLFELHITDAQPAFTGSYRCEVSTKDKFDCSNFNLTVH 107
Score = 38.8 bits (90), Expect = 3e-04
Identities = 10/33 (30%), Positives = 15/33 (45%), Gaps = 1/33 (3%)
Query: 2 ITEVKKSDEGKYQCYVQNMVGERETKPALLTVH 34
IT+ + + G Y+C V + LTVH
Sbjct: 76 ITDAQPAFTGSYRCEVSTKDKFDCSN-FNLTVH 107
Score = 35.0 bits (80), Expect = 0.005
Identities = 10/50 (20%), Positives = 15/50 (30%), Gaps = 4/50 (8%)
Query: 201 FRAEPKDTRVASGETALLEC---GPPKGQPEPTLHWKKNGQFIDLESSKR 247
F P+D V G + G +P P + W K +
Sbjct: 7 FVMRPQDGEVTVGGSITFSARVAGASLLKP-PVVKWFKGKWVDLSSKVGQ 55
Score = 31.9 bits (72), Expect = 0.059
Identities = 13/83 (15%), Positives = 24/83 (28%), Gaps = 15/83 (18%)
Query: 133 DTPPPIVQVGPSNQTLPLHSVAFLPCQAVGSP---PPHIRWYKNGN-----------SLP 178
D P + + P + + + + G+ PP ++W+K L
Sbjct: 1 DDPIGLFVMRPQDGEVTVGGSITFSARVAGASLLKPPVVKWFKGKWVDLSSKVGQHLQLH 60
Query: 179 PEDTRINVSSSGSLQI-DVLRDD 200
R + L I D
Sbjct: 61 DSYDRASKVYLFELHITDAQPAF 83
>2eo1_A OBSCN protein, cDNA FLJ14124 FIS, clone mamma1002498;
beta-sandwich, IG-fold, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 102
Score = 59.3 bits (144), Expect = 1e-11
Identities = 19/111 (17%), Positives = 39/111 (35%), Gaps = 17/111 (15%)
Query: 22 GERETKPALLTVHAPPSFVVRPQDQKVGLNGIASFQCVAEGSPLPSVFWTQEGSQVLMFP 81
G + ++ P+ ++ + A+ C V W ++G ++
Sbjct: 1 GSSGSSGKVVFAKEQPA----HREVQAEAGASATLSCEV-AQAQTEVTWYKDGKKL---- 51
Query: 82 GNAYGHLHVTQEG---TLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVT 129
++ + V G L +Q + +AG + C AG + LQV
Sbjct: 52 -SSSSKVRVEAVGCTRRLVVQQAGQAEAGEYSC----EAGGQQLSFRLQVA 97
Score = 45.9 bits (109), Expect = 7e-07
Identities = 12/53 (22%), Positives = 24/53 (45%), Gaps = 4/53 (7%)
Query: 201 FRAEPKDTRVASGETALLECGPPKGQPEPTLHWKKNGQFIDLESSKRVSILGD 253
+ ++ + +G +A L C Q + + W K+G+ L SS +V +
Sbjct: 14 EQPAHREVQAEAGASATLSC--EVAQAQTEVTWYKDGK--KLSSSSKVRVEAV 62
Score = 45.9 bits (109), Expect = 8e-07
Identities = 13/77 (16%), Positives = 25/77 (32%), Gaps = 7/77 (9%)
Query: 128 VTSVEDTPPPIVQVGPSNQTLPLHSVAFLPCQAVGSPPPHIRWYKNGNSLPPEDTRINVS 187
+S + + A L C+ V + WYK+G L ++ V
Sbjct: 4 GSSGKVVFAKEQPA-HREVQAEAGASATLSCE-VAQAQTEVTWYKDGKKLSSSS-KVRVE 60
Query: 188 SSG---SLQI-DVLRDD 200
+ G L + + +
Sbjct: 61 AVGCTRRLVVQQAGQAE 77
Score = 30.5 bits (69), Expect = 0.16
Identities = 6/34 (17%), Positives = 14/34 (41%), Gaps = 5/34 (14%)
Query: 2 ITEVKKSDEGKYQCYVQNMVGERETKPALLTVHA 35
+ + +++ G+Y C G ++ L V
Sbjct: 70 VQQAGQAEAGEYSC----EAGGQQLS-FRLQVAG 98
>2if7_A SLAM family member 6; NTB-A, homophilic receptor, immune system;
3.00A {Homo sapiens}
Length = 193
Score = 61.2 bits (148), Expect = 1e-11
Identities = 18/123 (14%), Positives = 36/123 (29%), Gaps = 4/123 (3%)
Query: 61 EGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGST 120
E S V + ++ + L+ TQ +L++ ++ ED G + + +
Sbjct: 37 ETSLAFIVPHETKSPEIHVTNPKQGKRLNFTQSYSLQLSNLKMEDTGSYRAQISTKTSAK 96
Query: 121 TVRAFLQVTSVEDTPPPIVQVGPSNQTLPLHSVAFLPCQAV-GSPPPHIRWYKNGNSLPP 179
+ + V + L C RW GN+L
Sbjct: 97 LSS--YTLRILRQLRNIQVTNHSQLFQ-NMTCELHLTCSVEDADDNVSFRWEALGNTLSS 153
Query: 180 EDT 182
+
Sbjct: 154 QPN 156
Score = 50.4 bits (120), Expect = 1e-07
Identities = 16/131 (12%), Positives = 35/131 (26%), Gaps = 18/131 (13%)
Query: 2 ITEVKKSDEGKYQCYVQNMVGERETKPALLTVHAPPSFVVRPQDQKVGLNGIASFQ---C 58
++ +K D G Y+ + + + L + + V Q N
Sbjct: 74 LSNLKMEDTGSYRAQISTKTSAKLSSYTLRILRQLRNIQVTNHSQLFQ-NMTCELHLTCS 132
Query: 59 VAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRI-QGVQKEDAGFFVCSALSVA 117
V + S W G+ + + L + + + C A +
Sbjct: 133 VEDADDNVSFRWEALGNTLS-------------SQPNLTVSWDPRISSEQDYTCIAENAV 179
Query: 118 GSTTVRAFLQV 128
+ + Q
Sbjct: 180 SNLSFSVSAQK 190
Score = 41.9 bits (98), Expect = 6e-05
Identities = 27/176 (15%), Positives = 40/176 (22%), Gaps = 64/176 (36%)
Query: 156 LPCQ-AVGSPPPHIRWYKNGNSL-----------------PPEDTRINVSSSGSLQI--- 194
LP + G I W N SL P + R+N + S SLQ+
Sbjct: 18 LPLEFPAGEKVNFITWLFNETSLAFIVPHETKSPEIHVTNPKQGKRLNFTQSYSLQLSNL 77
Query: 195 -----------------------DVLRDDFRAEPK-----DTRVASGETALLECGPPKGQ 226
+ + L C
Sbjct: 78 KMEDTGSYRAQISTKTSAKLSSYTLRILRQLRNIQVTNHSQLFQNMTCELHLTCSVEDAD 137
Query: 227 PEPTLHWKKNGQFIDLESSKRVSILGDPWFD-------------SRRSRSIFGSVL 269
+ W+ G L S +++ DP S S S+ L
Sbjct: 138 DNVSFRWEALGNT--LSSQPNLTVSWDPRISSEQDYTCIAENAVSNLSFSVSAQKL 191
Score = 30.0 bits (67), Expect = 0.63
Identities = 8/36 (22%), Positives = 12/36 (33%)
Query: 205 PKDTRVASGETALLECGPPKGQPEPTLHWKKNGQFI 240
P GE+ L P G+ + W N +
Sbjct: 5 PLMVNGILGESVTLPLEFPAGEKVNFITWLFNETSL 40
>2bk8_A Connectin, M1, titin heart isoform N2-B; IG domain, M-BAND,
structural protein, muscle, antibo; 1.69A {Homo sapiens}
Length = 97
Score = 58.5 bits (142), Expect = 2e-11
Identities = 18/99 (18%), Positives = 31/99 (31%), Gaps = 9/99 (9%)
Query: 39 FVVRPQDQKVGLNGIASFQCVAEGSPLPS-VFWTQEGSQVLMFPGNAYGHLHVTQEG--- 94
+ G + C E + V W Q+ +T E
Sbjct: 4 VSGQIMHAVGEEGGHVKYVCKIENYDQSTQVTWYFGVRQL-----ENSEKYEITYEDGVA 58
Query: 95 TLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVTSVED 133
L ++ + K D G + C ++ G + A L V V +
Sbjct: 59 ILYVKDITKLDDGTYRCKVVNDYGEDSSYAELFVKGVRE 97
Score = 44.6 bits (106), Expect = 2e-06
Identities = 8/69 (11%), Positives = 18/69 (26%), Gaps = 6/69 (8%)
Query: 137 PIVQVGPSNQTLPLHSVAFLPCQAVGSPPP-HIRWYKNGNSLPPEDTRINVSSSG---SL 192
+V + C+ + WY L + ++ L
Sbjct: 2 AMVSGQIMHAVGEEGGHVKYVCKIENYDQSTQVTWYFGVRQL-ENSEKYEITYEDGVAIL 60
Query: 193 QI-DVLRDD 200
+ D+ + D
Sbjct: 61 YVKDITKLD 69
Score = 38.8 bits (91), Expect = 2e-04
Identities = 12/36 (33%), Positives = 18/36 (50%), Gaps = 1/36 (2%)
Query: 2 ITEVKKSDEGKYQCYVQNMVGERETKPALLTVHAPP 37
+ ++ K D+G Y+C V N GE + A L V
Sbjct: 62 VKDITKLDDGTYRCKVVNDYGEDSSY-AELFVKGVR 96
Score = 38.1 bits (89), Expect = 4e-04
Identities = 8/54 (14%), Positives = 17/54 (31%), Gaps = 4/54 (7%)
Query: 201 FRAEPKDTRVASGETALLECGPPKGQPEPT-LHWKKNGQFIDLESSKRVSILGD 253
+ G C + + T + W + LE+S++ I +
Sbjct: 4 VSGQIMHAVGEEGGHVKYVC-KIENYDQSTQVTWYFGVR--QLENSEKYEITYE 54
>3rbg_A Cytotoxic and regulatory T-cell molecule; IGV, crtam, structural
genomics, PSI-biology, NEW YORK struc genomics research
consortium, nysgrc; 2.30A {Homo sapiens}
Length = 124
Score = 58.5 bits (141), Expect = 4e-11
Identities = 17/116 (14%), Positives = 31/116 (26%), Gaps = 11/116 (9%)
Query: 37 PSFVVRPQDQKVGLNGIASFQCVAEGSPLPSVFWTQEGSQVLMFPGNAYGH-------LH 89
S + V + +CV S+ W + H
Sbjct: 2 GSLTNHTETITVEEGQTLTLKCVTSLRKNSSLQWLTPSGFTIFLNEYPVLKNSKYQLLHH 61
Query: 90 VTQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVTSVEDTPPPIVQVGPSN 145
+ ++ + V +D G + C S +T + V T PS+
Sbjct: 62 SANQLSITVPNVTLQDEGVYKCLHYS-DSVSTKEVKVIVL---ATMKGEFCRYPSH 113
Score = 35.7 bits (82), Expect = 0.003
Identities = 10/37 (27%), Positives = 14/37 (37%), Gaps = 2/37 (5%)
Query: 2 ITEVKKSDEGKYQCYVQNMVGERETKPALLTVHAPPS 38
+ V DEG Y+C + TK + V A
Sbjct: 70 VPNVTLQDEGVYKCLHYSDSV--STKEVKVIVLATMK 104
Score = 32.3 bits (73), Expect = 0.064
Identities = 7/70 (10%), Positives = 20/70 (28%), Gaps = 12/70 (17%)
Query: 143 PSNQTLPLHSVAFLPCQAVGSPPPHIRWYKNGNSL-------PPEDTRINV----SSSGS 191
T+ L C ++W ++++ + ++ S
Sbjct: 8 TETITVEEGQTLTLKCVTSLRKNSSLQWLTPSGFTIFLNEYPVLKNSKYQLLHHSANQLS 67
Query: 192 LQI-DVLRDD 200
+ + +V D
Sbjct: 68 ITVPNVTLQD 77
Score = 31.1 bits (70), Expect = 0.17
Identities = 13/85 (15%), Positives = 24/85 (28%), Gaps = 14/85 (16%)
Query: 201 FRAEPKDTRVASGETALLECGPPKGQPEPTLHWKKNGQFIDLESSKRVSILGDPWFDSRR 260
+ V G+T L+C + +L W F + V +S+
Sbjct: 4 LTNHTETITVEEGQTLTLKC-VTSLRKNSSLQWLTPSGFTIFLNEYPVL------KNSKY 56
Query: 261 SRSIFGSVLGALSDDQWKLIAKNIR 285
S +Q + N+
Sbjct: 57 QLLHH-------SANQLSITVPNVT 74
>3eow_R Poliovirus receptor; immunoglobulin super family, alternative
splicing, cell adhesion, cell membrane, glycoprotein,
HOST-virus interaction; 3.50A {Homo sapiens} PDB: 3uro_R
3epc_R* 3epd_R* 3epf_R*
Length = 221
Score = 60.5 bits (146), Expect = 4e-11
Identities = 24/143 (16%), Positives = 43/143 (30%), Gaps = 9/143 (6%)
Query: 2 ITEVKKSDEGKYQCYVQNMVGERETKPALLTVHAPPSFVVRPQDQKVGLNGIASFQCVAE 61
+ ++ DEG Y C + L V A P Q ++ + +CV+
Sbjct: 82 MFGLRVEDEGSYTCLFVTFPQGSRSVDIWLRVLAKPQNTAEVQKVQLTGEPVPMARCVST 141
Query: 62 GS-PLPSVFWTQEGSQVLMF---PGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVA 117
G P + W + + PG G + VT + + D C +
Sbjct: 142 GGRPPAQITWHSDLGGMPQTSQVPGFLSGTVTVT--SLWILVPSSQVDGKQVTCKVEHES 199
Query: 118 GSTTVRAFLQVTSVEDTPPPIVQ 140
+ + +V P
Sbjct: 200 FEKPQLLTVSL-TVY--YPHHHH 219
Score = 59.7 bits (144), Expect = 8e-11
Identities = 30/189 (15%), Positives = 57/189 (30%), Gaps = 33/189 (17%)
Query: 40 VVRPQDQKVGLNGIASFQCVAEGSPLP-----SVFWTQEGSQVLMFPGNAYGHLHVTQ-- 92
V P L + C + + + W + G M + ++
Sbjct: 3 VQAPTQVPGFLGDSVTLPCYLQVPNMEVTHVSQLTWARHGESGSMAVFHQTQGPSYSESK 62
Query: 93 --------------EGTLRIQGVQKEDAGFFVCSALSV-AGSTTVRAFLQVTSVEDTPPP 137
+ +LR+ G++ ED G + C ++ GS +V +L+V + P
Sbjct: 63 RLEFVAARLGAELRDASLRMFGLRVEDEGSYTCLFVTFPQGSRSVDIWLRVLA-----KP 117
Query: 138 IVQVGPSNQTLPLHSVAFLPCQAVGS-PPPHIRWYKNGNSLPPEDTRIN-----VSSSGS 191
L V C + G PP I W+ + +P V+ +
Sbjct: 118 QNTAEVQKVQLTGEPVPMARCVSTGGRPPAQITWHSDLGGMPQTSQVPGFLSGTVTVTSL 177
Query: 192 LQIDVLRDD 200
+
Sbjct: 178 WILVPSSQV 186
Score = 32.0 bits (72), Expect = 0.16
Identities = 25/163 (15%), Positives = 44/163 (26%), Gaps = 56/163 (34%)
Query: 138 IVQVGPSNQTLPLHSVAFLPCQAVGSPPP-----HIRWYKNGNSLP------------PE 180
+VQ P+ L LPC + W ++G S E
Sbjct: 2 VVQA-PTQVPGFLGDSVTLPCYLQVPNMEVTHVSQLTWARHGESGSMAVFHQTQGPSYSE 60
Query: 181 DTRINVSSS--------GSLQIDVLR--DD------FRAEPKDTR--------------- 209
R+ ++ SL++ LR D+ F P+ +R
Sbjct: 61 SKRLEFVAARLGAELRDASLRMFGLRVEDEGSYTCLFVTFPQGSRSVDIWLRVLAKPQNT 120
Query: 210 -------VASGETALLECGPPKGQPEPTLHWKKNGQFIDLESS 245
+ + C G+P + W + + S
Sbjct: 121 AEVQKVQLTGEPVPMARCVSTGGRPPAQITWHSDLGGMPQTSQ 163
>1pd6_A Cardiac MYBP-C;, myosin-binding protein C, cardiac-type, domain C2;
IG domain, structural protein; NMR {Homo sapiens} SCOP:
b.1.1.4
Length = 104
Score = 57.8 bits (140), Expect = 5e-11
Identities = 18/108 (16%), Positives = 28/108 (25%), Gaps = 13/108 (12%)
Query: 26 TKPALLTVHAPPSFVVRPQD-QKVGLNGIASFQCVAEGSPLPSVFWTQEGSQVLMFPGNA 84
+ + +F + + +V V W + G Q + G+
Sbjct: 5 HHHSSMDEKKSTAFQKKLEPAYQVSKGHKIRLTVELAD-HDAEVKWLKNG-QEIQMSGSK 62
Query: 85 YGHLHVTQEG---TLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVT 129
Y G TL I D + C V G L V
Sbjct: 63 Y---IFESIGAKRTLTISQCSLADDAAYQC----VVGGEKCSTELFVK 103
Score = 54.3 bits (131), Expect = 8e-10
Identities = 11/73 (15%), Positives = 21/73 (28%), Gaps = 5/73 (6%)
Query: 132 EDTPPPIVQVGPSNQTLPLHSVAFLPCQAVGSPPPHIRWYKNGNSLPPEDTRINVSSSG- 190
E + + L + + ++W KNG + ++ S G
Sbjct: 12 EKKSTAFQKKLEPAYQVSKGHKIRLTVE-LADHDAEVKWLKNGQEIQMSGSKYIFESIGA 70
Query: 191 --SLQI-DVLRDD 200
+L I D
Sbjct: 71 KRTLTISQCSLAD 83
Score = 37.4 bits (87), Expect = 7e-04
Identities = 10/53 (18%), Positives = 16/53 (30%), Gaps = 3/53 (5%)
Query: 201 FRAEPKDTRVASGETALLECGPPKGQPEPTLHWKKNGQFIDLESSKRVSILGD 253
+ +V+ G L + + W KNGQ I S +
Sbjct: 19 QKKLEPAYQVSKGHKIRLTVEL--ADHDAEVKWLKNGQEIQ-MSGSKYIFESI 68
Score = 30.4 bits (69), Expect = 0.22
Identities = 9/32 (28%), Positives = 15/32 (46%), Gaps = 5/32 (15%)
Query: 2 ITEVKKSDEGKYQCYVQNMVGERETKPALLTV 33
I++ +D+ YQC +VG + L V
Sbjct: 76 ISQCSLADDAAYQC----VVGGEKCS-TELFV 102
>2yuv_A Myosin-binding protein C, SLOW-type; SLOW-type myosin-binding
protein C, immunoglobulin domain, structural genomics,
NPPSFA; NMR {Homo sapiens} PDB: 2yxm_A
Length = 100
Score = 57.0 bits (138), Expect = 7e-11
Identities = 19/107 (17%), Positives = 27/107 (25%), Gaps = 18/107 (16%)
Query: 35 APPSFVVRPQDQ-KVGLNGIASFQCVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQE 93
+ +F +V G F P V W + G ++ +
Sbjct: 6 SGAAFAKILDPAYQVDKGGRVRFVVEL-ADPKLEVKWYKNGQEI-----RPSTKYIFEHK 59
Query: 94 G---TLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVTSVEDTPPP 137
G L I Q D + AG L V S P
Sbjct: 60 GCQRILFINNCQMTDDSEYYV----TAGDEKCSTELFVRS----GPS 98
Score = 48.5 bits (116), Expect = 8e-08
Identities = 13/75 (17%), Positives = 24/75 (32%), Gaps = 6/75 (8%)
Query: 130 SVEDTPPPIVQVGPSNQTLPLHSVAFLPCQAVGSPPPHIRWYKNGNSLPPEDTRINVSSS 189
S + ++ + + + P ++WYKNG + P T+
Sbjct: 2 SSGSSGAAFAKILDPAYQVDKGGRVRFVVE-LADPKLEVKWYKNGQEIRP-STKYIFEHK 59
Query: 190 G---SLQI-DVLRDD 200
G L I + D
Sbjct: 60 GCQRILFINNCQMTD 74
Score = 40.8 bits (96), Expect = 5e-05
Identities = 9/49 (18%), Positives = 15/49 (30%), Gaps = 4/49 (8%)
Query: 205 PKDTRVASGETALLECGPPKGQPEPTLHWKKNGQFIDLESSKRVSILGD 253
+V G P+ + W KNGQ ++ S +
Sbjct: 15 DPAYQVDKGGRVRFVV--ELADPKLEVKWYKNGQ--EIRPSTKYIFEHK 59
Score = 37.0 bits (86), Expect = 0.001
Identities = 8/37 (21%), Positives = 15/37 (40%), Gaps = 5/37 (13%)
Query: 2 ITEVKKSDEGKYQCYVQNMVGERETKPALLTVHAPPS 38
I + +D+ +Y G+ + L V + PS
Sbjct: 67 INNCQMTDDSEYYV----TAGDEKCS-TELFVRSGPS 98
>1mq8_A ICAM-1, intercellular adhesion molecule-1, CD54 antigen; IG
superfamily, rossmann fold, metal mediated protein
interf immune system; HET: NAG; 3.30A {Homo sapiens}
SCOP: b.1.1.3 b.1.1.4
Length = 291
Score = 60.3 bits (145), Expect = 1e-10
Identities = 36/208 (17%), Positives = 62/208 (29%), Gaps = 25/208 (12%)
Query: 8 SDEGKYQCYVQNMVGERETKPALLTVHAPPSFV-VRPQDQKVGLNGIASFQCVAEGS-PL 65
++ + CY + T LTV+ P V + P + + +C EG P
Sbjct: 58 QEDSQPMCYSNC-PDGQSTAKTFLTVYWTPERVELAPLPSWQPVGKNLTLRCQVEGGAPR 116
Query: 66 P--SVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSA--------LS 115
+V + ++ + E T + + F C L
Sbjct: 117 ANLTVVLLRGEKEL-----KREPAVGEPAEVTTTVLVRRDHHGANFSCRTELDLRPQGLE 171
Query: 116 VAGSTTVRAFLQVTSVEDTPPPIVQVGPSNQTLPLHSVAFLPCQAVGSPPP---HIRWYK 172
+ +T+ LQ P S + L + + + C G P +
Sbjct: 172 LFENTSAPYQLQTFV----LPATPPQLVSPRVLEVDTQGTVVCSLDGLFPVSEAQVHLAL 227
Query: 173 NGNSLPPEDTRINVSSSGSLQIDVLRDD 200
L P T N S S + V +D
Sbjct: 228 GDQRLNPTVTYGNDSFSAKASVSVTAED 255
Score = 53.7 bits (128), Expect = 2e-08
Identities = 26/167 (15%), Positives = 46/167 (27%), Gaps = 17/167 (10%)
Query: 41 VRPQDQKVGLNGIASFQCVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQG 100
V P + G C + + L + +
Sbjct: 4 VSPSKVILPRGGSVLVTCSTSCDQPKLLGIETPLPKK---------ELLLPGNNRKVYEL 54
Query: 101 VQKEDAGFFVCSALSVAGSTTVRAFLQVTSVEDTPPPIVQVGPSNQTLPLHSVAFLPCQA 160
++ +C + G +T + FL V P V++ P P+ L CQ
Sbjct: 55 SNVQEDSQPMCYSNCPDGQSTAKTFLTVY----WTPERVELAPLPSWQPVGKNLTLRCQV 110
Query: 161 VGSPPPH---IRWYKNGNSLPPEDTRINVSSSGSLQIDVLRDDFRAE 204
G P + + L E + + + + V RD A
Sbjct: 111 EGGAPRANLTVVLLRGEKELKRE-PAVGEPAEVTTTVLVRRDHHGAN 156
Score = 34.4 bits (78), Expect = 0.033
Identities = 18/138 (13%), Positives = 30/138 (21%), Gaps = 27/138 (19%)
Query: 139 VQVGPSNQTLPLHSVAFLPCQAVGSPPPHIRWYKNGNSLPPEDTRINV------------ 186
V PS LP + C P + N
Sbjct: 2 TSVSPSKVILPRGGSVLVTCSTSCDQPKLLGIETPLPKKELLLPGNNRKVYELSNVQEDS 61
Query: 187 -----------SSSGSLQIDVLR--DDFRAEPKDTRVASGETALLECGPPKGQPEP--TL 231
S+ + V + P + G+ L C G P T+
Sbjct: 62 QPMCYSNCPDGQSTAKTFLTVYWTPERVELAPLPSWQPVGKNLTLRCQVEGGAPRANLTV 121
Query: 232 HWKKNGQFIDLESSKRVS 249
+ + + E +
Sbjct: 122 VLLRGEKELKREPAVGEP 139
>3m45_A Cell adhesion molecule 2; IG fold, dimer, disulfide bond,
glycoprotein, immunoglobulin membrane, transmembrane;
HET: NAG; 2.21A {Mus musculus}
Length = 108
Score = 56.8 bits (137), Expect = 1e-10
Identities = 22/104 (21%), Positives = 35/104 (33%), Gaps = 8/104 (7%)
Query: 32 TVHAPPSFVVRPQDQKVGLNGIASFQCVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVT 91
V Q+ V G A C + + S+ W+ Q L F +
Sbjct: 2 KVKGSQGQFPLTQNVTVVEGGTAILTCRVDQNDNTSLQWSNPAQQTLYFDDKKALRDNRI 61
Query: 92 Q-------EGTLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQV 128
+ E ++ + V D G + CS L T +A+L V
Sbjct: 62 ELVRASWHELSISVSDVSLSDEGQYTCS-LFTMPVKTSKAYLTV 104
Score = 35.6 bits (82), Expect = 0.004
Identities = 14/36 (38%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
Query: 2 ITEVKKSDEGKYQCYVQNMVGERETKPALLTVHAPP 37
+++V SDEG+Y C + M +T A LTV P
Sbjct: 75 VSDVSLSDEGQYTCSLFTM--PVKTSKAYLTVLGVP 108
Score = 35.2 bits (81), Expect = 0.004
Identities = 13/77 (16%), Positives = 23/77 (29%), Gaps = 12/77 (15%)
Query: 136 PPIVQVGPSNQTLPLHSVAFLPCQAVGSPPPHIRWYKN-------GNSLPPEDTRINVSS 188
N T+ A L C+ + ++W + D RI +
Sbjct: 6 SQGQFPLTQNVTVVEGGTAILTCRVDQNDNTSLQWSNPAQQTLYFDDKKALRDNRIELVR 65
Query: 189 SG----SLQI-DVLRDD 200
+ S+ + DV D
Sbjct: 66 ASWHELSISVSDVSLSD 82
Score = 29.1 bits (65), Expect = 0.73
Identities = 10/45 (22%), Positives = 15/45 (33%), Gaps = 1/45 (2%)
Query: 205 PKDTRVASGETALLECGPPKGQPEPTLHWKKNGQFIDLESSKRVS 249
++ V G TA+L C +L W Q K+
Sbjct: 13 TQNVTVVEGGTAILTC-RVDQNDNTSLQWSNPAQQTLYFDDKKAL 56
>3s35_X Vascular endothelial growth factor receptor 2; antibody, KDR, VEGF
receptor, cancer, immune system-transfer complex; HET:
NAG; 2.20A {Homo sapiens} PDB: 3s36_X 3s37_X
Length = 122
Score = 56.3 bits (135), Expect = 2e-10
Identities = 20/113 (17%), Positives = 33/113 (29%), Gaps = 13/113 (11%)
Query: 43 PQDQKVGLNGIASFQCVAEGSPLPSVFWT--------QEGSQVLMFPGNAYGHLHVTQEG 94
++ + C A + + Q V G
Sbjct: 15 SHGIELSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLS 74
Query: 95 TLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVTSVEDTPPPIVQVGPSNQT 147
TL I GV + D G + C+A S + F++V P V G ++
Sbjct: 75 TLTIDGVTRSDQGLYTCAASSGLMTKKNSTFVRVHE-----KPFVAFGSGMES 122
Score = 38.2 bits (88), Expect = 5e-04
Identities = 10/36 (27%), Positives = 17/36 (47%), Gaps = 1/36 (2%)
Query: 2 ITEVKKSDEGKYQCYVQNMVGERETKPALLTVHAPP 37
I V +SD+G Y C + + ++ + VH P
Sbjct: 78 IDGVTRSDQGLYTCAASSGLMTKKNS-TFVRVHEKP 112
Score = 30.9 bits (69), Expect = 0.21
Identities = 6/63 (9%), Positives = 16/63 (25%), Gaps = 5/63 (7%)
Query: 205 PKDTRVASGETALLEC---GPPKGQPEPTLHWKKNGQFIDLESSKRVSILGDPWFDSRRS 261
++ GE +L C +W+ + + + ++
Sbjct: 15 SHGIELSVGEKLVLNCTARTEL--NVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKF 72
Query: 262 RSI 264
S
Sbjct: 73 LST 75
Score = 29.7 bits (66), Expect = 0.50
Identities = 7/49 (14%), Positives = 13/49 (26%)
Query: 136 PPIVQVGPSNQTLPLHSVAFLPCQAVGSPPPHIRWYKNGNSLPPEDTRI 184
+V L + L C A I + S + ++
Sbjct: 8 YDVVLSPSHGIELSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKL 56
>2e7c_A Myosin-binding protein C, fast-type; IG-like domain, fast MYBP-C,
C-protein, skeletal muscle fast-isoform, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 118
Score = 55.9 bits (135), Expect = 3e-10
Identities = 15/106 (14%), Positives = 33/106 (31%), Gaps = 9/106 (8%)
Query: 33 VHAPPSFVVRP---QDQKVGLNGIASFQCVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLH 89
+ PP + Q + + +G P P V WT+ G+ + +
Sbjct: 18 IAEPPKIRLPRHLRQTYIRKVGEQLNLVVPFQGKPRPQVVWTKGGAPL---DTSRVHVRT 74
Query: 90 VTQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVTSVEDTP 135
+ ++ + D+G + S T ++V +
Sbjct: 75 SDFDTVFFVRQAARSDSGEYELSVQIENMKDTATIRIRVV---EKA 117
Score = 47.8 bits (114), Expect = 2e-07
Identities = 17/92 (18%), Positives = 27/92 (29%), Gaps = 7/92 (7%)
Query: 113 ALSVAGSTTVRAFLQVTSVEDTPPPIVQVGPSNQTLPLH--SVAFLPCQAVGSPPPHIRW 170
+ +G+ ++ + PP I QT L G P P + W
Sbjct: 2 SSGSSGTLAQPVTIREIAE---PPKIRLPRHLRQTYIRKVGEQLNLVVPFQGKPRPQVVW 58
Query: 171 YKNGNSLPPEDTRINVSSSGS-LQI-DVLRDD 200
K G L + S + + R D
Sbjct: 59 TKGGAPLDTSRVHVRTSDFDTVFFVRQAARSD 90
Score = 40.5 bits (95), Expect = 7e-05
Identities = 8/36 (22%), Positives = 16/36 (44%), Gaps = 1/36 (2%)
Query: 2 ITEVKKSDEGKYQCYVQNMVGERETKPALLTVHAPP 37
+ + +SD G+Y+ VQ + +T + V
Sbjct: 83 VRQAARSDSGEYELSVQIENMK-DTATIRIRVVEKA 117
Score = 39.3 bits (92), Expect = 2e-04
Identities = 13/46 (28%), Positives = 20/46 (43%), Gaps = 4/46 (8%)
Query: 205 PKDTRVASGETALLECGPPKGQPEPTLHWKKNGQFIDLESSKRVSI 250
+ GE L P +G+P P + W K G +D + RV +
Sbjct: 31 RQTYIRKVGEQLNLVV-PFQGKPRPQVVWTKGGAPLD---TSRVHV 72
>2e6p_A Obscurin-like protein 1; IG-like domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 104
Score = 55.5 bits (134), Expect = 3e-10
Identities = 17/109 (15%), Positives = 33/109 (30%), Gaps = 18/109 (16%)
Query: 35 APPSFVVRPQ---DQKVGLNGIASFQCVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVT 91
+ P ++ PQ + C W ++G +V L V
Sbjct: 6 SGPVHILSPQDKVSLTFTTSERVVLTCEL-SRVDFPATWYKDGQKV-----EESELLVVK 59
Query: 92 QEG---TLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVTSVEDTPPP 137
+G L + + +D+G F C + + V + + P
Sbjct: 60 MDGRKHRLILPEAKVQDSGEFEC----RTEGVSAFFGVTVQ--DPSGPS 102
Score = 43.5 bits (103), Expect = 5e-06
Identities = 13/74 (17%), Positives = 25/74 (33%), Gaps = 9/74 (12%)
Query: 134 TPPPIVQVGP---SNQTLPLHSVAFLPCQAVGSPPPHIRWYKNGNSLPPEDTRINVSSSG 190
+ P+ + P + T L C+ + WYK+G + + + V G
Sbjct: 5 SSGPVHILSPQDKVSLTFTTSERVVLTCE-LSRVDFPATWYKDGQKVEESE-LLVVKMDG 62
Query: 191 ---SLQI-DVLRDD 200
L + + D
Sbjct: 63 RKHRLILPEAKVQD 76
Score = 40.8 bits (96), Expect = 5e-05
Identities = 10/50 (20%), Positives = 20/50 (40%), Gaps = 4/50 (8%)
Query: 204 EPKDTRVASGETALLECGPPKGQPEPTLHWKKNGQFIDLESSKRVSILGD 253
+ + E +L C + + W K+GQ +E S+ + + D
Sbjct: 16 DKVSLTFTTSERVVLTCEL--SRVDFPATWYKDGQ--KVEESELLVVKMD 61
Score = 33.9 bits (78), Expect = 0.012
Identities = 8/38 (21%), Positives = 13/38 (34%), Gaps = 5/38 (13%)
Query: 2 ITEVKKSDEGKYQCYVQNMVGERETKPALLTVHAPPSF 39
+ E K D G+++C +TV P
Sbjct: 69 LPEAKVQDSGEFEC----RTEGVSAF-FGVTVQDPSGP 101
>1sy6_A T-cell surface glycoprotein CD3 gamma/epsilon chain; CD3 epsilon,
OKT3 FAB, signaling protein/antibiotic complex; 2.10A
{Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 2atp_E*
Length = 204
Score = 57.6 bits (138), Expect = 3e-10
Identities = 19/181 (10%), Positives = 43/181 (23%), Gaps = 43/181 (23%)
Query: 38 SFVVRPQDQKVGLNGIASFQCVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLR 97
+D V L C + ++ W ++G + + +
Sbjct: 11 KVYDYQEDGSVLLT------C---DAEAKNITWFKDGKMIGFLTED---------KKKWN 52
Query: 98 IQGVQKEDAGFFVCSALSVAGSTT---------------------VRAFLQVTSVEDTPP 136
+ K+ G + C + D
Sbjct: 53 LGSNAKDPRGMYQCKGSQNKSKPLQVYYRMGSADDAKKDAAKKDDAKKDDAKKDGSDGNE 112
Query: 137 PIVQVGPSNQTLPL-HSVAFLPCQAVGSPPPHIRWYKNGNSLPPE-DTRINVSSSGSLQI 194
+ + + + + + L C P I W N ++ + D + S L +
Sbjct: 113 EMGGITQTPYKVSISGTTVILTCPQ--YPGSEILWQHNDKNIGGDEDDKNIGSDEDHLSL 170
Query: 195 D 195
Sbjct: 171 K 171
Score = 48.4 bits (114), Expect = 6e-07
Identities = 20/155 (12%), Positives = 38/155 (24%), Gaps = 33/155 (21%)
Query: 2 ITEVKKSDEGKYQCYVQNMVGER-----------ETKPALLTVHAPPSFVVR-------- 42
+ K G YQC + + K +
Sbjct: 53 LGSNAKDPRGMYQCKGSQNKSKPLQVYYRMGSADDAKKDAAKKDDAKKDDAKKDGSDGNE 112
Query: 43 ------PQDQKVGLNGI-ASFQCVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGT 95
KV ++G C P + W + G+ + E
Sbjct: 113 EMGGITQTPYKVSISGTTVILTCPQY--PGSEILWQHNDKNI---GGDEDDKNIGSDEDH 167
Query: 96 LRIQGV-QKEDAGFFVCSALSVAGS-TTVRAFLQV 128
L ++ + E +G++VC +L+
Sbjct: 168 LSLKEFSELEQSGYYVCYPRGSKPEDANFYLYLRA 202
Score = 48.4 bits (114), Expect = 6e-07
Identities = 21/154 (13%), Positives = 37/154 (24%), Gaps = 58/154 (37%)
Query: 151 HSVAFLPCQAVGSPPPHIRWYKNGNSLPPEDTRINVSSSGSLQID--------------- 195
SV L C + +I W+K+G + + GS D
Sbjct: 19 GSV-LLTC---DAEAKNITWFKDGKMIGFLTEDKKKWNLGSNAKDPRGMYQCKGSQNKSK 74
Query: 196 -----------------------------------VLRDDFRAEPKDTRVA-SGETALLE 219
+ +V+ SG T +L
Sbjct: 75 PLQVYYRMGSADDAKKDAAKKDDAKKDDAKKDGSDGNEEMGGITQTPYKVSISGTTVILT 134
Query: 220 CGPPKGQPEPTLHWKKNGQFIDLESSKRVSILGD 253
C P + W+ N + I + + +
Sbjct: 135 C---PQYPGSEILWQHNDKNIGGDEDDKNIGSDE 165
Score = 36.4 bits (83), Expect = 0.006
Identities = 6/27 (22%), Positives = 7/27 (25%)
Query: 8 SDEGKYQCYVQNMVGERETKPALLTVH 34
G Y CY + E L
Sbjct: 177 EQSGYYVCYPRGSKPEDANFYLYLRAR 203
Score = 31.0 bits (69), Expect = 0.35
Identities = 7/35 (20%), Positives = 13/35 (37%), Gaps = 4/35 (11%)
Query: 213 GETALLECGPPKGQPEPTLHWKKNGQFIDLESSKR 247
+ LL C + W K+G+ I + +
Sbjct: 18 DGSVLLTCDAE----AKNITWFKDGKMIGFLTEDK 48
>2v5y_A Receptor-type tyrosine-protein phosphatase MU; membrane, hydrolase,
glycoprotein, receptor protei tyrosine phosphatase, cell
adhesion; HET: NAG; 3.10A {Homo sapiens}
Length = 731
Score = 59.4 bits (143), Expect = 4e-10
Identities = 26/145 (17%), Positives = 43/145 (29%), Gaps = 7/145 (4%)
Query: 4 EVKKSDEGKYQCYVQNMVGERETKPAL--LTVHAPPSF----VVRPQDQKVGLNGIASFQ 57
+ YQ + + + A+ + V P +R Q+ +V A+FQ
Sbjct: 126 AISTFWPNFYQVIFEVITSGHQGYLAIDEVKVLGHPCTRTPHFLRIQNVEVNAGQFATFQ 185
Query: 58 CVAEGSPLPSVFWTQEGSQVLMFPGNAYGHL-HVTQEGTLRIQGVQKEDAGFFVCSALSV 116
C A G + +G V P + + K DAG + C +
Sbjct: 186 CSAIGRTVAGDRLWLQGIDVRDAPLKEIKVTSSRRFIASFNVVNTTKRDAGKYRCMIRTE 245
Query: 117 AGSTTVRAFLQVTSVEDTPPPIVQV 141
G V P Q+
Sbjct: 246 GGVGISNYAELVVKEPPVPIAPPQL 270
Score = 58.3 bits (140), Expect = 8e-10
Identities = 18/132 (13%), Positives = 29/132 (21%), Gaps = 12/132 (9%)
Query: 52 GIASFQCVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVC 111
G+ + PL + W G + L I
Sbjct: 92 GLLNVYVKVNNGPLGNPIWNISGDP-----TRTW------NRAELAISTFWPNFYQVIFE 140
Query: 112 SALSVAGSTTVRAFLQVTSVEDTPPPIVQVGPSNQTLPLHSVAFLPCQAVGSPPPHIRWY 171
S ++V T P N + A C A+G R +
Sbjct: 141 VITSGHQGYLAIDEVKVLGHPCTRTPHFL-RIQNVEVNAGQFATFQCSAIGRTVAGDRLW 199
Query: 172 KNGNSLPPEDTR 183
G + +
Sbjct: 200 LQGIDVRDAPLK 211
Score = 39.0 bits (90), Expect = 0.002
Identities = 14/44 (31%), Positives = 20/44 (45%)
Query: 1 MITEVKKSDEGKYQCYVQNMVGERETKPALLTVHAPPSFVVRPQ 44
+ K D GKY+C ++ G + A L V PP + PQ
Sbjct: 226 NVVNTTKRDAGKYRCMIRTEGGVGISNYAELVVKEPPVPIAPPQ 269
>2dru_A Chimera of CD48 antigen and T-cell surface antige; CD2 binding
domain of CD48, immune system; HET: NAG; 2.60A {Rattus
norvegicus}
Length = 180
Score = 55.7 bits (134), Expect = 1e-09
Identities = 21/100 (21%), Positives = 34/100 (34%), Gaps = 12/100 (12%)
Query: 90 VTQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVTSVEDTPPPIVQVGPSNQTLP 149
G LRI V KED G + L + ++V E P++ SN TL
Sbjct: 65 DKTNGALRIYNVSKEDRGDYYMRMLH-ETEDQWKITMEVY--EMVSKPMIYWECSNATLT 121
Query: 150 LHSVAFLPCQAVGSPPPHIRWYKNGNSLPPEDTRINVSSS 189
C+ + ++ Y+ L + +S
Sbjct: 122 --------CEVLEGTDVELKLYQGKEHL-RSLRQKTMSYQ 152
Score = 42.6 bits (100), Expect = 3e-05
Identities = 20/112 (17%), Positives = 32/112 (28%), Gaps = 20/112 (17%)
Query: 2 ITEVKKSDEGKYQCYVQNMVGERETKPALLTVHAPPSFVVRPQDQKVGLNGIASFQCVAE 61
I V K D G Y + + ++ + V+ S +P N A+ C
Sbjct: 73 IYNVSKEDRGDYYMRMLHETEDQWK--ITMEVYEMVS---KPMIYWECSN--ATLTCEVL 125
Query: 62 GSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSA 113
+ Q HL ++ T+ Q F C A
Sbjct: 126 EGTDVELKLYQGKE-----------HLRSLRQKTMSYQWTN--LRAPFKCKA 164
Score = 31.4 bits (71), Expect = 0.20
Identities = 26/152 (17%), Positives = 50/152 (32%), Gaps = 35/152 (23%)
Query: 132 EDTPPPIVQV--GPSNQTLPLHSVAFLPCQAV----GSPPPHIRWYKNGNSLPPEDT--- 182
+D P V G SN TL + Q + + + ++ NG E
Sbjct: 2 QDQSVPNVNAITG-SNVTLTILKHPLASYQRLTWLHTTNQKILEYFPNGKKTVFESVFKD 60
Query: 183 RINV-SSSGSLQI-DVLRDD----------------------FRAEPKDTRVASGETALL 218
R+++ ++G+L+I +V ++D + K A L
Sbjct: 61 RVDLDKTNGALRIYNVSKEDRGDYYMRMLHETEDQWKITMEVYEMVSKPMIYWECSNATL 120
Query: 219 ECGPPKGQPEPTLHWKKNGQFIDLESSKRVSI 250
C +G + L + + + K +S
Sbjct: 121 TCEVLEG-TDVELKLYQGKEHLRSLRQKTMSY 151
Score = 28.7 bits (64), Expect = 1.5
Identities = 8/57 (14%), Positives = 12/57 (21%), Gaps = 1/57 (1%)
Query: 204 EPKDTRVASGETALLECGPPKGQPEPTLHWKKNGQFIDLE-SSKRVSILGDPWFDSR 259
+ +G L L W LE + + F R
Sbjct: 5 SVPNVNAITGSNVTLTILKHPLASYQRLTWLHTTNQKILEYFPNGKKTVFESVFKDR 61
>3uto_A Twitchin; kinase, muscle sarcomere, transferase; HET: FLC P33;
2.40A {Caenorhabditis elegans} PDB: 1koa_A
Length = 573
Score = 56.8 bits (137), Expect = 2e-09
Identities = 26/96 (27%), Positives = 41/96 (42%), Gaps = 2/96 (2%)
Query: 34 HAPPSFVVRPQDQKVGLNGIASFQCVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQE 93
A P F+V+P +VG A+F C S P V W ++ ++ Y + +
Sbjct: 480 EAQPRFIVKPYGTEVGEGQSANFYCRVIASSPPVVTWHKDDREL--KQSVKYMKRYNGND 537
Query: 94 GTLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVT 129
L I V+ +D G + A + G+ FL VT
Sbjct: 538 YGLTINRVKGDDKGEYTVRAKNSYGTKEEIVFLNVT 573
Score = 37.5 bits (87), Expect = 0.004
Identities = 17/73 (23%), Positives = 26/73 (35%), Gaps = 5/73 (6%)
Query: 132 EDTPPPIVQVGPSNQTLPLHSVAFLPCQAVGSPPPHIRWYKNGNSLPPEDTRINVSSSG- 190
P V P + A C+ + S PP + W+K+ L + + +G
Sbjct: 478 RSEAQPRFIVKPYGTEVGEGQSANFYCRVIASSPPVVTWHKDDREL-KQSVKYMKRYNGN 536
Query: 191 --SLQI-DVLRDD 200
L I V DD
Sbjct: 537 DYGLTINRVKGDD 549
Score = 37.1 bits (86), Expect = 0.006
Identities = 18/93 (19%), Positives = 31/93 (33%), Gaps = 3/93 (3%)
Query: 158 CQAVGSPPPHIRWYKNGNSLPPEDTRINVSSSGSLQIDVLRDDFRAEPKDTRVASGETAL 217
A P P + N +SL + + F +P T V G++A
Sbjct: 442 YDAWPEPLPPLGRISNYSSLRKHRPQEYSIRDAFWDRSEAQPRFIVKPYGTEVGEGQSAN 501
Query: 218 LECGPPKGQPEPTLHWKKNGQFIDLESSKRVSI 250
C P + W K+ + +L+ S +
Sbjct: 502 FYCRV-IASSPPVVTWHKDDR--ELKQSVKYMK 531
Score = 35.2 bits (81), Expect = 0.021
Identities = 11/32 (34%), Positives = 15/32 (46%), Gaps = 1/32 (3%)
Query: 2 ITEVKKSDEGKYQCYVQNMVGERETKPALLTV 33
I VK D+G+Y +N G +E L V
Sbjct: 542 INRVKGDDKGEYTVRAKNSYGTKEEI-VFLNV 572
>1he7_A High affinity nerve growth factor receptor; transferase,
TRK-receptor, strand-swapping; 2.0A {Homo sapiens} SCOP:
b.1.1.4 PDB: 1wwa_X 1www_X
Length = 126
Score = 51.5 bits (123), Expect = 1e-08
Identities = 19/121 (15%), Positives = 32/121 (26%), Gaps = 10/121 (8%)
Query: 36 PPSFVVRPQDQKVGLNGIASFQCVAEGSPLPSVFWTQEGSQVLMFPG-----NAYGHLHV 90
P+ V ++ +G P PS+ W GS +
Sbjct: 3 MPASVQLHTAVEMHH---WCIPFSVDGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANET 59
Query: 91 TQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVTS--VEDTPPPIVQVGPSNQTL 148
+ G LR+ + G + A + G + E P + S
Sbjct: 60 VRHGCLRLNQPTHVNNGNYTLLAANPFGQASASIMAAFMDNPFEFNPEDPIPDTNSTSGD 119
Query: 149 P 149
P
Sbjct: 120 P 120
Score = 43.8 bits (103), Expect = 7e-06
Identities = 16/70 (22%), Positives = 25/70 (35%), Gaps = 13/70 (18%)
Query: 135 PPPIVQVGPSNQTLPLHSVAFLPCQAVGSPPPHIRWYKNGNSLPP---------EDTRIN 185
P VQ+ + +H +P G P P +RW NG+ L E
Sbjct: 3 MPASVQLH---TAVEMHHWC-IPFSVDGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANE 58
Query: 186 VSSSGSLQID 195
G L+++
Sbjct: 59 TVRHGCLRLN 68
Score = 35.7 bits (82), Expect = 0.004
Identities = 8/44 (18%), Positives = 15/44 (34%), Gaps = 2/44 (4%)
Query: 2 ITEVKKSDEGKYQCYVQNMVGERETKPALLTVHAPPSFVVRPQD 45
+ + + G Y N G+ + + P F P+D
Sbjct: 67 LNQPTHVNNGNYTLLAANPFGQ-ASASIMAAFMDNP-FEFNPED 108
Score = 35.7 bits (82), Expect = 0.005
Identities = 13/51 (25%), Positives = 19/51 (37%), Gaps = 2/51 (3%)
Query: 205 PKDTRVASGETALLECGPP--KGQPEPTLHWKKNGQFIDLESSKRVSILGD 253
P ++ + C P GQP P+L W NG ++ S L
Sbjct: 4 PASVQLHTAVEMHHWCIPFSVDGQPAPSLRWLFNGSVLNETSFIFTEFLEP 54
>1gxe_A Myosin binding protein C, cardiac-type; cytoskeleton, muscle, IGI,
thick filament, immunoglobulin domain; NMR {Homo
sapiens} SCOP: b.1.1.4
Length = 139
Score = 51.3 bits (122), Expect = 2e-08
Identities = 20/134 (14%), Positives = 34/134 (25%), Gaps = 31/134 (23%)
Query: 23 ERETKPALLTVHAPPSFVVRPQDQKVGLNGIASFQCVAEGSPLPSVFWTQEGSQVL---- 78
R+ P + P V G P P+V W + +Q
Sbjct: 9 SRQEPPKI----HLDCPGRIPDTIVVVAGNKLRLDVPISGDPAPTVIWQKAITQGNKAPA 64
Query: 79 --------------------MFPGNAYGHLHVTQEG---TLRIQGVQKEDAGFFVCSALS 115
G + V ++G +KED G + + +
Sbjct: 65 RPAPDAPEDTGDSDEWVFDKKLLCETEGRVRVETTKDRSIFTVEGAEKEDEGVYTVTVKN 124
Query: 116 VAGSTTVRAFLQVT 129
G V ++V
Sbjct: 125 PVGEDQVNLTVKVI 138
Score = 40.9 bits (95), Expect = 9e-05
Identities = 14/65 (21%), Positives = 22/65 (33%), Gaps = 1/65 (1%)
Query: 199 DDFRAEPKDTRVASGETALLECGPPKGQPEPTLHWKKNGQFIDLESSKRVSILGDPWFDS 258
D P V +G L+ P G P PT+ W+K + ++ + DS
Sbjct: 19 DCPGRIPDTIVVVAGNKLRLDV-PISGDPAPTVIWQKAITQGNKAPARPAPDAPEDTGDS 77
Query: 259 RRSRS 263
Sbjct: 78 DEWVF 82
Score = 39.7 bits (92), Expect = 2e-04
Identities = 13/87 (14%), Positives = 19/87 (21%), Gaps = 4/87 (4%)
Query: 127 QVTSVEDTPPPI----VQVGPSNQTLPLHSVAFLPCQAVGSPPPHIRWYKNGNSLPPEDT 182
S PP I P + + L G P P + W K
Sbjct: 5 HHHSSRQEPPKIHLDCPGRIPDTIVVVAGNKLRLDVPISGDPAPTVIWQKAITQGNKAPA 64
Query: 183 RINVSSSGSLQIDVLRDDFRAEPKDTR 209
R + + +T
Sbjct: 65 RPAPDAPEDTGDSDEWVFDKKLLCETE 91
Score = 36.3 bits (83), Expect = 0.003
Identities = 11/32 (34%), Positives = 16/32 (50%), Gaps = 1/32 (3%)
Query: 2 ITEVKKSDEGKYQCYVQNMVGERETKPALLTV 33
+ +K DEG Y V+N VGE + + V
Sbjct: 107 VEGAEKEDEGVYTVTVKNPVGE-DQVNLTVKV 137
>4f80_A Butyrophilin subfamily 3 member A1; B7 superfamily, CD277, immune
system; 1.94A {Homo sapiens} PDB: 4f9l_A* 4f9p_A 4f8t_A
4f8q_A
Length = 226
Score = 52.4 bits (125), Expect = 3e-08
Identities = 22/102 (21%), Positives = 37/102 (36%), Gaps = 9/102 (8%)
Query: 95 TLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVTSVEDTPPPIVQVGPSNQTLPLHSVA 154
LRI V D+G ++C G +A +++ V V
Sbjct: 84 ALRIHNVTASDSGKYLCYFQD--GDFYEKALVELKVAALGSDLHVDVKGYK-----DGGI 136
Query: 155 FLPCQAVG-SPPPHIRWYKN-GNSLPPEDTRINVSSSGSLQI 194
L C++ G P P I+W N G ++P + + G +
Sbjct: 137 HLECRSTGWYPQPQIQWSNNKGENIPTVEAPVVADGVGLYAV 178
Score = 52.0 bits (124), Expect = 3e-08
Identities = 24/132 (18%), Positives = 42/132 (31%), Gaps = 10/132 (7%)
Query: 2 ITEVKKSDEGKYQCYVQNMVGERETKPALLTVHAPPSFVVRPQDQKVGLNGIASFQCVAE 61
I V SD GKY CY Q+ + AL+ + D K +G +C +
Sbjct: 87 IHNVTASDSGKYLCYFQDGDFYEK---ALVELKVAALGSDLHVDVKGYKDGGIHLECRST 143
Query: 62 G-SPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQG---VQKEDAGFFVCSALSVA 117
G P P + W+ + + + G + ++ C+ S
Sbjct: 144 GWYPQPQIQWSNNKGENIP---TVEAPVVADGVGLYAVAASVIMRGSSGEGVSCTIRSSL 200
Query: 118 GSTTVRAFLQVT 129
A + +
Sbjct: 201 LGLEKTASISIA 212
Score = 28.9 bits (64), Expect = 1.5
Identities = 9/67 (13%), Positives = 18/67 (26%), Gaps = 1/67 (1%)
Query: 184 INVSSSGSLQIDVLRDDFRAEPK-DTRVASGETALLECGPPKGQPEPTLHWKKNGQFIDL 242
+ +++ ++ D + LEC P+P + W N
Sbjct: 103 QDGDFYEKALVELKVAALGSDLHVDVKGYKDGGIHLECRSTGWYPQPQIQWSNNKGENIP 162
Query: 243 ESSKRVS 249
V
Sbjct: 163 TVEAPVV 169
>3bn3_B ICAM-5, intercellular adhesion molecule 5, telencephalin; I domain,
integrin, allosteric mobility, cell adhesi immune
system; HET: NAG; 2.10A {Homo sapiens}
Length = 196
Score = 50.5 bits (120), Expect = 1e-07
Identities = 21/171 (12%), Positives = 45/171 (26%), Gaps = 20/171 (11%)
Query: 41 VRPQDQKVGLNGIASFQCVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQG 100
++P+ V G C + G + ++
Sbjct: 7 LQPRVAFVERGGSLWLNCSTNCPRPERGGLETSLRRNGTQRG--------LRWLARQLVD 58
Query: 101 VQKEDAGFFVCSALSVAGSTTVRAFLQVTSVEDTPPPIVQVGPSNQTLPLHSVAFLPCQA 160
++ E VC + R ++ P V++ P P+ L C+
Sbjct: 59 IR-EPETQPVCFFRCARRTLQARGLIRTFQ----RPDRVELMPLPPWQPVGENFTLSCRV 113
Query: 161 VGSPPPH---IRWYKNGNSLP----PEDTRINVSSSGSLQIDVLRDDFRAE 204
G+ P + + L + + + + R+D A
Sbjct: 114 PGAGPRASLTLTLLRGAQELIRRSFAGEPPRARGAVLTATVLARREDHGAN 164
Score = 44.7 bits (105), Expect = 9e-06
Identities = 12/110 (10%), Positives = 30/110 (27%), Gaps = 5/110 (4%)
Query: 8 SDEGKYQCYVQNMVGERETKPALLTVHAPPSFV-VRPQDQKVGLNGIASFQCVAEGS--- 63
E + C+ + L+ P V + P + + C G+
Sbjct: 61 EPETQPVCFFRCA-RRTLQARGLIRTFQRPDRVELMPLPPWQPVGENFTLSCRVPGAGPR 119
Query: 64 PLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSA 113
++ + +++ T + +++ F C A
Sbjct: 120 ASLTLTLLRGAQELIRRSFAGEPPRARGAVLTATVLARREDHGANFSCRA 169
Score = 35.4 bits (81), Expect = 0.012
Identities = 19/141 (13%), Positives = 28/141 (19%), Gaps = 27/141 (19%)
Query: 136 PPIVQVGPSNQTLPLHSVAFLPCQAVGSPPPHI--RWYKNGNSLPPEDTRI-----NVSS 188
P + P + +L C P N + ++
Sbjct: 2 PFWADLQPRVAFVERGGSLWLNCSTNCPRPERGGLETSLRRNGTQRGLRWLARQLVDIRE 61
Query: 189 ----------------SGSLQIDVLR--DDFRAEPKDTRVASGETALLECGPPKGQPEP- 229
I + D P GE L C P P
Sbjct: 62 PETQPVCFFRCARRTLQARGLIRTFQRPDRVELMPLPPWQPVGENFTLSCRVPGAGPRAS 121
Query: 230 -TLHWKKNGQFIDLESSKRVS 249
TL + Q + S
Sbjct: 122 LTLTLLRGAQELIRRSFAGEP 142
>3vh8_G Killer cell immunoglobulin-like receptor 3DL1; immunoglobulin fold,
natural killer cell receptor, immune SY; HET: NAG; 1.80A
{Homo sapiens} PDB: 1im9_D
Length = 316
Score = 50.6 bits (121), Expect = 2e-07
Identities = 31/205 (15%), Positives = 56/205 (27%), Gaps = 18/205 (8%)
Query: 2 ITEVKKSDEGKYQCYVQNMVGERET----KPALLTV--HAPPSFVVRPQDQKVGLNGIAS 55
++ V + G Y C + P ++ V + ++ V
Sbjct: 78 MSPVTTAHAGNYTCRGSHPHSPTGWSAPSNPVVIMVTGNHRKPSLLAHPGPLVKSGERVI 137
Query: 56 FQCVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALS 115
QC ++ F +EG H V++ I + AG + C
Sbjct: 138 LQCWSDIMF-EHFFLHKEGISKDPSRLVGQIHDGVSK-ANFSIGPMMLALAGTYRCYGSV 195
Query: 116 VAGSTTVRAF-----LQVTSVEDTPPPIVQVGPSNQTLPLHSVAFLPCQAVGSPPPHIRW 170
+ A + VT + P Q GP + L C + S
Sbjct: 196 THTPYQLSAPSDPLDIVVTGPYEKPSLSAQPGP---KVQAGESVTLSCSS-RSSYDMYHL 251
Query: 171 YKNGNSLPPEDTRINVSSSGSLQID 195
+ G + + + Q D
Sbjct: 252 SREGGAHER-RLPAVRKVNRTFQAD 275
Score = 39.9 bits (93), Expect = 6e-04
Identities = 29/168 (17%), Positives = 47/168 (27%), Gaps = 22/168 (13%)
Query: 27 KPALLTVHAPPSFVVRPQDQKVGLNGIASFQCVAEGSPLPSVFWTQEGSQVLMFPGNAYG 86
KP L A PS VV P+ V + +C + +E +
Sbjct: 24 KPFLS---AWPSAVV-PRGGHV------TLRCHYR-HRFNNFMLYKEDRI------HIPI 66
Query: 87 HLHVTQEGTLRIQGVQKEDAGFFVCSA---LSVAGSTTVRAFLQVTSVEDTPPPIVQVGP 143
+ + + V AG + C S G + + + + P + P
Sbjct: 67 FHGRIFQESFNMSPVTTAHAGNYTCRGSHPHSPTGWSAPSNPVVIMVTGNHRKPSLLAHP 126
Query: 144 SNQTLPLHSVAFLPCQAVGSPPPHIRWYKNGNSLPPEDTRINVSSSGS 191
V L C + H +K G S P + S
Sbjct: 127 GPLVKSGERVI-LQCWSD-IMFEHFFLHKEGISKDPSRLVGQIHDGVS 172
>1uct_A Immunoglobulin alpha FC receptor; beta stands, immune system; 2.10A
{Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1ovz_A*
1ow0_C*
Length = 218
Score = 49.9 bits (119), Expect = 2e-07
Identities = 18/116 (15%), Positives = 30/116 (25%), Gaps = 11/116 (9%)
Query: 2 ITEVKKSDEGKYQCYVQNMVGERE-TKPALLTV---HAPPSFVVRPQDQKVGLNGIASFQ 57
I + + G+YQC + + L V + P + S
Sbjct: 68 IDHMDANKAGRYQCQYRIGHYRFRYSDTLELVVTGLYGKPFLSADR-GLVLMPGENISLT 126
Query: 58 CVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSA 113
C + P +EG L H + V +G + C
Sbjct: 127 CSSAHIPFDRFSLAKEGELSLPQ------HQSGEHPANFSLGPVDLNVSGIYRCYG 176
Score = 45.2 bits (107), Expect = 7e-06
Identities = 23/154 (14%), Positives = 43/154 (27%), Gaps = 15/154 (9%)
Query: 27 KPALLTVHAPPSFVVRPQDQKVGLNGIASFQC-VAEGSPLPSVFWTQEGSQVLMFPGNAY 85
P + A S V+ P D V QC + L + + + + +
Sbjct: 9 MPFIS---AKSSPVI-PLDGSV------KIQCQAIREAYLTQLMIIKNSTYREIGRRLKF 58
Query: 86 GHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVTSVEDTPPPIVQVGPSN 145
+ + I + AG + C L++ P +
Sbjct: 59 WN---ETDPEFVIDHMDANKAGRYQCQYRIGHYRFRYSDTLELVVTGLYGKPFLSADRGL 115
Query: 146 QTLPLHSVAFLPCQAVGSPPPHIRWYKNGNSLPP 179
+P +++ L C + P K G P
Sbjct: 116 VLMPGENIS-LTCSSAHIPFDRFSLAKEGELSLP 148
Score = 28.3 bits (63), Expect = 2.4
Identities = 8/55 (14%), Positives = 18/55 (32%), Gaps = 1/55 (1%)
Query: 202 RAEPKDTRVASGETALLECGPPKGQPEPTLHWKKNGQFIDLESSKRVSILGDPWF 256
A+ + + ++C + L KN + ++ + DP F
Sbjct: 13 SAKS-SPVIPLDGSVKIQCQAIREAYLTQLMIIKNSTYREIGRRLKFWNETDPEF 66
>1olz_A Semaphorin 4D; developmental protein, CD100, beta-propeller, PSI
domain, IG-like domain, extracellular receptor,
neurogenesis; 2.0A {Homo sapiens} SCOP: b.1.1.4
b.69.12.1 g.16.2.1 PDB: 3ol2_A*
Length = 663
Score = 50.1 bits (118), Expect = 4e-07
Identities = 22/117 (18%), Positives = 37/117 (31%), Gaps = 5/117 (4%)
Query: 51 NGIASFQCVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFV 110
G A +C + S L VFW + + + L I + + D+G +
Sbjct: 548 GGTAELKCSQK-SNLARVFWKFQNGVLK----AESPKYGLMGRKNLLIFNLSEGDSGVYQ 602
Query: 111 CSALSVAGSTTVRAFLQVTSVEDTPPPIVQVGPSNQTLPLHSVAFLPCQAVGSPPPH 167
C + + TV + +E P V P+ + V S H
Sbjct: 603 CLSEERVKNKTVFQVVAKHVLEVKVVPKPVVAPTLSVVQTEGSRIATKVLVASTKHH 659
Score = 37.8 bits (86), Expect = 0.003
Identities = 10/50 (20%), Positives = 15/50 (30%), Gaps = 1/50 (2%)
Query: 151 HSVAFLPCQAVGSPPPHIRWYKNGNSLPPEDTRINVSSSGSLQIDVLRDD 200
A L C S + W L E + + +L I L +
Sbjct: 548 GGTAELKCSQK-SNLARVFWKFQNGVLKAESPKYGLMGRKNLLIFNLSEG 596
Score = 29.3 bits (64), Expect = 1.6
Identities = 14/52 (26%), Positives = 20/52 (38%), Gaps = 4/52 (7%)
Query: 1 MITEVKKSDEGKYQCYVQNMVGE----RETKPALLTVHAPPSFVVRPQDQKV 48
+I + + D G YQC + V + +L V P VV P V
Sbjct: 589 LIFNLSEGDSGVYQCLSEERVKNKTVFQVVAKHVLEVKVVPKPVVAPTLSVV 640
>2wqr_A IG epsilon chain C region; immune system, immunoglobulin domain,
glycoprotein; HET: NAG BMA MAN PG4; 1.90A {Homo sapiens}
PDB: 2y7q_B* 1o0v_A* 3h9y_A* 3h9z_A* 3ha0_A* 1fp5_A
1f6a_B 1g84_A
Length = 323
Score = 48.9 bits (116), Expect = 7e-07
Identities = 22/189 (11%), Positives = 44/189 (23%), Gaps = 23/189 (12%)
Query: 9 DEGKYQCYVQ---NMVGERETKPALLTVHAPPSFVVRPQDQKVGLNGIASFQCVAEGSPL 65
+ Y C V + + K A +++ RP + + + C+
Sbjct: 83 SDRTYTCQVTYQGHTFEDSTKKCADSNPRGVSAYLSRPSPFDLFIRKSPTITCLVVDLAP 142
Query: 66 P----SVFWTQEGSQVLM--------FPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSA 113
+ W++ + + TL + + + C
Sbjct: 143 SKGTVQLTWSRASGKPVNHSTRKEEKQRNGTLT-----VTSTLPVGTRDWIEGETYQCRV 197
Query: 114 LSVAGSTTVRAFLQVTSVEDTPPPIVQVGPSNQTLPLHSVAFLPCQAVG-SPPP-HIRWY 171
+ TS P + L C P ++W
Sbjct: 198 THPHLPRALMRSTTKTSGPRAAPEVYAFATPEWPGSRDKRT-LACLIQNFMPEDISVQWL 256
Query: 172 KNGNSLPPE 180
N LP
Sbjct: 257 HNEVQLPDA 265
Score = 40.0 bits (93), Expect = 6e-04
Identities = 24/171 (14%), Positives = 42/171 (24%), Gaps = 13/171 (7%)
Query: 32 TVHAPPSFVVRP-QDQKVGLNGIASFQCVAEG-SPLP-SVFWTQEG----SQVLMFPGNA 84
P +++ D C+ G +P + W ++G +
Sbjct: 4 DFTPPTVKILQSSCDGGGHFPPTIQLLCLVSGYTPGTIQITWLEDGQVMDVDLSTASTTQ 63
Query: 85 YGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVTSVEDTPPPIVQVGPS 144
G L TQ L + + C + G T + + PS
Sbjct: 64 EGELASTQ-SELTLSQKHWLSDRTYTCQV-TYQGHTFEDSTKKCADSNPRGVSAYLSRPS 121
Query: 145 NQTLPLHSVAFLPCQAVGSPPP----HIRWYKNGNSLPPEDTRINVSSSGS 191
L + + C V P + W + TR
Sbjct: 122 PFDLFIRKSPTITCLVVDLAPSKGTVQLTWSRASGKPVNHSTRKEEKQRNG 172
>3pv7_A B7-H6, IG-like domain-containing protein
DKFZP686O24166/DKFZP686I21167; NK cell receptor,
receptor-ligand complex, immune system; HET: NAG; 2.00A
{Homo sapiens} PDB: 3pv6_A*
Length = 248
Score = 48.1 bits (114), Expect = 9e-07
Identities = 27/187 (14%), Positives = 56/187 (29%), Gaps = 37/187 (19%)
Query: 31 LTVHAPPSFVVRPQDQKVGLNGIASFQCVAEGSPLPS-----VFWTQ----EGSQVLMFP 81
+ + A + + D + C S + + W +V +F
Sbjct: 5 VEMMAGGTQITPLNDN-------VTIFCNIFYSQPLNITSMGITWFWKSLTFDKEVKVFE 57
Query: 82 GNAYGHLHVTQEG------------TLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVT 129
+LR+ G+Q E+AG + C + L+V
Sbjct: 58 FFGDHQEAFRPGAIVSPWRLKSGDASLRLPGIQLEEAGEYRCEVVVTPLKAQGTVQLEVV 117
Query: 130 SVEDTPPPIVQVGPSNQTLPLHSVAFLPCQAVGSPPPHI--RWYKNGNSLP-PEDTRINV 186
+ P ++ + + C++ G P I W K P P + +V
Sbjct: 118 A-----SPASRLLLDQVGMKENEDK-YMCESSGFYPEAINITWEKQTQKFPHPIEISEDV 171
Query: 187 SSSGSLQ 193
+ +++
Sbjct: 172 ITGPTIK 178
Score = 40.0 bits (93), Expect = 4e-04
Identities = 21/119 (17%), Positives = 43/119 (36%), Gaps = 16/119 (13%)
Query: 2 ITEVKKSDEGKYQC--YVQNMVGERETKPALLTVHAPPSFVVRPQDQKVGLNGIASFQCV 59
+ ++ + G+Y+C V + + + L V A P+ + DQ + C
Sbjct: 86 LPGIQLEEAGEYRCEVVVTPLKAQGTVQ---LEVVASPASRLLL-DQVGMKENEDKYMCE 141
Query: 60 AEG-SPLP-SVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSV 116
+ G P ++ W ++ + H E + ++ D F V S L +
Sbjct: 142 SSGFYPEAINITWEKQTQKF--------PHPIEISEDVITGPTIKNMDGTFNVTSCLKL 192
>2d3v_A Leukocyte immunoglobulin-like receptor subfamily A member 5 isoform
1; immunoglobulin-like fold, immune system; 1.85A {Homo
sapiens}
Length = 196
Score = 46.8 bits (111), Expect = 1e-06
Identities = 21/116 (18%), Positives = 36/116 (31%), Gaps = 6/116 (5%)
Query: 2 ITEVKKSDEGKYQCYVQNMVGERET-KPALLTV---HAPPSFVVRPQDQKVGLNGIASFQ 57
I + + G+Y+CY + G E P L V + P+ P V + Q
Sbjct: 62 IPSMTEHHAGRYRCYYYSPAGWSEPSDPLELVVTGFYNKPTLSALPS-PVVTSGENVTLQ 120
Query: 58 CVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSA 113
C + T+EG L + ++ + + V C
Sbjct: 121 CGSRLRF-DRFILTEEGDHKLSWTLDSQLTPSGQFQALFPVGPVTPSHRWMLRCYG 175
Score = 45.3 bits (107), Expect = 6e-06
Identities = 31/168 (18%), Positives = 54/168 (32%), Gaps = 18/168 (10%)
Query: 27 KPALLTVHAPPSFVVRPQDQKVGLNGIASFQCVAEGSPLPSVFW-TQEGSQVLMFPGNAY 85
K L A P V+ + V + +C +G+ + +EGS P +
Sbjct: 5 KATLW---AEPGSVI-SRGNSV------TIRC--QGTLEAQEYRLVKEGSPE---PWDTQ 49
Query: 86 GHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVTSVEDTPPPIVQVGPSN 145
L + I + + AG + C S AG + L++ P + PS
Sbjct: 50 NPLEPKNKARFSIPSMTEHHAGRYRCYYYSPAGWSEPSDPLELVVTGFYNKPTLSALPSP 109
Query: 146 QTLPLHSVAFLPCQAVGSPPPHIRWYKNGNSLPPEDTRINVSSSGSLQ 193
+V L C + + G+ ++ SG Q
Sbjct: 110 VVTSGENVT-LQCGS-RLRFDRFILTEEGDHKLSWTLDSQLTPSGQFQ 155
>2edn_A Myosin-binding protein C, fast-type; beta-sandwich, IG-fold, fast
MYBP-C, C-protein, skeletal muscle fast isoform,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 118
Score = 44.8 bits (105), Expect = 2e-06
Identities = 16/103 (15%), Positives = 27/103 (26%), Gaps = 10/103 (9%)
Query: 36 PPSFVVRPQDQKVGLNGIASFQCVAEGSPL---PSVFWTQEGSQVLMFPGNAYGHLHVTQ 92
F+ +P V A G L P++ W + L A +
Sbjct: 12 TGVFLKKPDSVSVETGKDAVVVAKVNGKELPDKPTIKWFKGKWLELGSKSGARFSFKESH 71
Query: 93 EG-------TLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQV 128
L I V D G++ + + + V
Sbjct: 72 NSASNVYTVELHIGKVVLGDRGYYRLEVKAKDTCDSCGFNIDV 114
Score = 34.4 bits (78), Expect = 0.012
Identities = 9/35 (25%), Positives = 13/35 (37%), Gaps = 1/35 (2%)
Query: 2 ITEVKKSDEGKYQCYVQNMVGERETKPALLTVHAP 36
I +V D G Y+ V+ + V AP
Sbjct: 84 IGKVVLGDRGYYRLEVKAKDTCDSC-GFNIDVEAP 117
>1n26_A IL-6 receptor alpha chain; transmembrane, glycoprotein,
immunoglobulin domain, cytokine; HET: NAG BMA MAN NDG;
2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.2.1 b.1.2.1 PDB:
1p9m_C 2arw_A
Length = 325
Score = 46.8 bits (110), Expect = 3e-06
Identities = 26/160 (16%), Positives = 39/160 (24%), Gaps = 12/160 (7%)
Query: 31 LTVHAPPSFVVRPQDQKVGLNGIASFQCVA-EGSPLPSVFWTQEGSQVLMFPGNAYGHLH 89
L P+ V + C E +V W P G
Sbjct: 1 LAPRRCPAQEVARGVLTSLPGDSVTLTCPGVEPEDNATVHWVLRKPAAGSHPSRWAG--- 57
Query: 90 VTQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVTSVEDTPPPIVQVGPSNQTLP 149
L ++ VQ D+G + C AG L V+ P L
Sbjct: 58 --MGRRLLLRSVQLHDSGNYSCYR---AGRPAGTVHLL---VDVPPEEPQLSCFRKSPLS 109
Query: 150 LHSVAFLPCQAVGSPPPHIRWYKNGNSLPPEDTRINVSSS 189
+ P + + + P ED + S
Sbjct: 110 NVVCEWGPRSTPSLTTKAVLLVRKFQNSPAEDFQEPCQYS 149
Score = 42.5 bits (99), Expect = 9e-05
Identities = 9/65 (13%), Positives = 16/65 (24%), Gaps = 2/65 (3%)
Query: 135 PPPIVQVGPSNQTLPLHSVAFLPCQAV-GSPPPHIRWYKNGNSLPPEDTRINVSSSGSLQ 193
P +V T L C V + W + +R L
Sbjct: 5 RCPAQEVARGVLTSLPGDSVTLTCPGVEPEDNATVHWVLRKPAAGSHPSRWAGMGR-RLL 63
Query: 194 IDVLR 198
+ ++
Sbjct: 64 LRSVQ 68
Score = 38.3 bits (88), Expect = 0.002
Identities = 7/48 (14%), Positives = 13/48 (27%)
Query: 201 FRAEPKDTRVASGETALLECGPPKGQPEPTLHWKKNGQFIDLESSKRV 248
G++ L C + + T+HW S+
Sbjct: 9 QEVARGVLTSLPGDSVTLTCPGVEPEDNATVHWVLRKPAAGSHPSRWA 56
Score = 29.8 bits (66), Expect = 1.0
Identities = 13/58 (22%), Positives = 20/58 (34%), Gaps = 7/58 (12%)
Query: 1 MITEVKKSDEGKYQCYVQNMVGERETKPALLTVHAPPSFVVRPQDQKVGLNGIASFQC 58
++ V+ D G Y CY L V PP PQ + +++ C
Sbjct: 63 LLRSVQLHDSGNYSCYRAGRPAGT----VHLLVDVPPE---EPQLSCFRKSPLSNVVC 113
>2wng_A Tyrosine-protein phosphatase non-receptor type substrate 1; signal
regulatory protein alpha, immunoglobulin superfamily,
phosphoprotein; HET: NAG; 2.49A {Homo sapiens}
Length = 327
Score = 46.5 bits (110), Expect = 4e-06
Identities = 25/102 (24%), Positives = 40/102 (39%), Gaps = 5/102 (4%)
Query: 95 TLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVTSVEDT--PPPIVQVGPSNQTLPLHS 152
++ I + DAG + C T T + P V GP+ + P H+
Sbjct: 75 SISISNITPADAGTYYCVKFRKGSPDTEFKSGAGTELSVRAKPSAPVVSGPAARATPQHT 134
Query: 153 VAFLPCQAVGSPPPHI--RWYKNGNSLPPEDTRINVSSSGSL 192
V+ C++ G P I +W+KNGN L T ++
Sbjct: 135 VS-FTCESHGFSPRDITLKWFKNGNELSDFQTNVDPVGESVS 175
Score = 46.5 bits (110), Expect = 4e-06
Identities = 33/193 (17%), Positives = 62/193 (32%), Gaps = 24/193 (12%)
Query: 2 ITEVKKSDEGKYQCYVQN-----MVGERETKPALLTVHAPPSFVVRPQDQKVGLNGIASF 56
I+ + +D G Y C + L P + VV + SF
Sbjct: 78 ISNITPADAGTYYCVKFRKGSPDTEFKSGAGTELSVRAKPSAPVVSGPAARATPQHTVSF 137
Query: 57 QCVAEG-SPLP-SVFWTQEGSQVLMF--------PGNAYGHLHVTQEGTLRIQGVQKEDA 106
C + G SP ++ W + G+++ F +Y + T ++ +++
Sbjct: 138 TCESHGFSPRDITLKWFKNGNELSDFQTNVDPVGESVSY-----SIHSTAKVVLTREDVH 192
Query: 107 GFFVCSALSVAGSTTVRAFLQVTSVEDTPPPIVQVGPSNQTLPLHSVAFLPCQAVGSPPP 166
+C V S PP ++V + + + CQ P
Sbjct: 193 SQVICEVAHVTLQGDPLRGTANLSETIRVPPTLEVTQQ--PVRAENQVNVTCQVRKFYPQ 250
Query: 167 HIR--WYKNGNSL 177
++ W +NGN
Sbjct: 251 RLQLTWLENGNVS 263
>2zg1_A Sialic acid-binding IG-like lectin 5; siglec-5 inhibitory receptor,
two-domain structure, V-SET, C2-SET, IG-like domain,
6'-sialyllactose complex; HET: SIA; 2.70A {Homo sapiens}
PDB: 2zg3_A* 2zg2_A
Length = 214
Score = 45.6 bits (107), Expect = 4e-06
Identities = 21/137 (15%), Positives = 34/137 (24%), Gaps = 17/137 (12%)
Query: 2 ITEVKKSDEGKYQCYVQNMVGERET---KPALLTV----HAPPSFVVRPQDQKVGLNGIA 54
I + + D G Y V+ + + L V P + P +
Sbjct: 86 IGDARMEDTGSYFFRVERGRDVKYSYQQNKLNLEVTALIEKPDIHFLEPLESGRPTRLSC 145
Query: 55 SFQCVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSAL 114
S E P + WT L T+ L + ++ C
Sbjct: 146 SLPGSCEAGPPLTFSWTGNALSPL--------DPETTRSSELTLTPRPEDHGTNLTCQMK 197
Query: 115 SVAGSTTVRA--FLQVT 129
T L V+
Sbjct: 198 RQGAQVTTERTVQLNVS 214
Score = 43.7 bits (102), Expect = 2e-05
Identities = 20/109 (18%), Positives = 31/109 (28%), Gaps = 7/109 (6%)
Query: 95 TLRIQGVQKEDAGFFVCSALSV--AGSTTVRAFLQVT-SVEDTPPPIVQVGPSNQTLPLH 151
+L I + ED G + + + L + + P I + P P
Sbjct: 83 SLSIGDARMEDTGSYFFRVERGRDVKYSYQQNKLNLEVTALIEKPDIHFLEPLESGRPTR 142
Query: 152 SVAFLPCQAVGSPPPHIRWYKNGNSLPPEDTRINVSSSGSLQIDVLRDD 200
LP PP W N S + S L + +D
Sbjct: 143 LSCSLPGSCEAGPPLTFSWTGNALSPLDP----ETTRSSELTLTPRPED 187
>2e6q_A Obscurin-like protein 1; IG-like domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 112
Score = 43.8 bits (103), Expect = 5e-06
Identities = 18/112 (16%), Positives = 38/112 (33%), Gaps = 17/112 (15%)
Query: 35 APPSFVVRP-QDQKVGLNGIASFQCVAEGSPLPSVFWTQEGSQV-----LMFPGNAYGHL 88
+ + +V +D +V A F + S + W G ++
Sbjct: 6 SGTARLVAGLEDVQVYDGEDAVFSL--DLSTIIQGTWFLNGEELKSNEPEGQVEPGALRY 63
Query: 89 HVTQEGT---LRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVTSVEDTPPP 137
+ Q+G L + V+ +D+G V A L +++++ P
Sbjct: 64 RIEQKGLQHRLILHAVKHQDSGALVG---FSCPGVQDSAAL---TIQESSGP 109
Score = 33.0 bits (75), Expect = 0.028
Identities = 9/61 (14%), Positives = 15/61 (24%), Gaps = 2/61 (3%)
Query: 130 SVEDTPPPIVQVGPSNQTLPLHSVAFLPCQAVGSPPPHIRWYKNGNSLPPEDTRINVSSS 189
S + + G + + A S W+ NG L + V
Sbjct: 2 SSGSSGTARLVAGLEDVQVYDGEDAVFSLDL--STIIQGTWFLNGEELKSNEPEGQVEPG 59
Query: 190 G 190
Sbjct: 60 A 60
Score = 27.3 bits (60), Expect = 3.0
Identities = 10/61 (16%), Positives = 18/61 (29%), Gaps = 3/61 (4%)
Query: 201 FRAEPKDTRVASGETALLECGPPKGQPEPTLHWKKNGQFIDLESSKRVSILGDPWFDSRR 260
A +D +V GE A+ W NG+ + + G + +
Sbjct: 11 LVAGLEDVQVYDGEDAVFSL---DLSTIIQGTWFLNGEELKSNEPEGQVEPGALRYRIEQ 67
Query: 261 S 261
Sbjct: 68 K 68
>1ugn_A LIR1, leukocyte immunoglobulin-like receptor 1; immunoglobulin-like
folds, immune system; 1.80A {Homo sapiens} SCOP: b.1.1.4
b.1.1.4 PDB: 3d2u_D* 1g0x_A 1p7q_D 1ufu_A 1vdg_A 2gw5_A
2dyp_D 2otp_A 3q2c_A
Length = 198
Score = 45.2 bits (107), Expect = 6e-06
Identities = 30/169 (17%), Positives = 51/169 (30%), Gaps = 19/169 (11%)
Query: 27 KPALLTVHAPPSFVVRPQDQKVGLNGIASFQCVAEGSPLPSVFW-TQEGSQVLMFPGNAY 85
KP T+ A P V+ Q V + +C +G + +E P
Sbjct: 5 KP---TLWAEPGSVI-TQGSPV------TLRC--QGGQETQEYRLYREKKT---APWITR 49
Query: 86 GHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVR-AFLQVTSVEDTPPPIVQVGPS 144
+ ++G I + E G + C S + L++ P + PS
Sbjct: 50 IPQELVKKGQFPIPSITWEHTGRYRCYYGSDTAGRSESSDPLELVVTGAYIKPTLSAQPS 109
Query: 145 NQTLPLHSVAFLPCQAVGSPPPHIRWYKNGNSLPPEDTRINVSSSGSLQ 193
+V L C + K G P+ + GS +
Sbjct: 110 PVVNSGGNVT-LQCDS-QVAFDGFILCKEGEDEHPQCLNSQPHARGSSR 156
Score = 40.6 bits (95), Expect = 2e-04
Identities = 19/117 (16%), Positives = 36/117 (30%), Gaps = 7/117 (5%)
Query: 2 ITEVKKSDEGKYQCYVQNMVGERETK-----PALLTVHAPPSFVVRPQDQKVGLNGIASF 56
I + G+Y+CY + R + + P+ +P V G +
Sbjct: 62 IPSITWEHTGRYRCYYGSDTAGRSESSDPLELVVTGAYIKPTLSAQP-SPVVNSGGNVTL 120
Query: 57 QCVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSA 113
QC ++ +EG N+ H + + V ++ C A
Sbjct: 121 QCDSQ-VAFDGFILCKEGEDEHPQCLNSQPHARGSSRAIFSVGPVSPSRRWWYRCYA 176
>1p6f_A NKP46, natural cytotoxicity triggering receptor 1; natural
cytotoxicity receptor, NK cell receptor, immunoglobulin
fold, immune system; 2.20A {Homo sapiens} SCOP: b.1.1.4
b.1.1.4
Length = 242
Score = 44.9 bits (106), Expect = 1e-05
Identities = 26/157 (16%), Positives = 47/157 (29%), Gaps = 16/157 (10%)
Query: 27 KPALLTVHAPPSFVVRPQDQKVGLNGIASFQCVAEGSPLPSVFWTQEGSQVLMFPGNAYG 86
KP + A P F+V P++++V + C EGS +
Sbjct: 7 KPFIW---AEPHFMV-PKEKQV------TICCQGN-YGAVEYQLHFEGSLFAVDRPKPPE 55
Query: 87 HLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVTSVEDTPPPIVQVGPSNQ 146
++ + I + AG + C + L + E P + V P +
Sbjct: 56 RIN---KVKFYIPDMNSRMAGQYSCIYRVGELWSEPSNLLDLVVTEMYDTPTLSVHPGPE 112
Query: 147 TLPLHSVAFLPCQAVGSPPPHIRWYKNGNSLPPEDTR 183
+ V C+ + K G S +
Sbjct: 113 VISGEKVT-FYCRL-DTATSMFLLLKEGRSSHVQRGY 147
Score = 44.5 bits (105), Expect = 1e-05
Identities = 25/177 (14%), Positives = 43/177 (24%), Gaps = 20/177 (11%)
Query: 2 ITEVKKSDEGKYQCYVQNMVGERETKPAL-LTVHA--PPSFVVRPQDQKVGLNGIASFQC 58
I ++ G+Y C + E L L V + +V +F C
Sbjct: 64 IPDMNSRMAGQYSCIYRVGELWSEPSNLLDLVVTEMYDTPTLSVHPGPEVISGEKVTFYC 123
Query: 59 VAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSA----- 113
+ + +EG + + + + V G + C
Sbjct: 124 RLD-TATSMFLLLKEGRS------SHVQRGYGKVQAEFPLGPVTTAHRGTYRCFGSYNNH 176
Query: 114 LSVAGSTTVRAFLQVTSVEDTPPPIVQVGPSNQTLPLHSVAFLPCQAVGSPPPHIRW 170
S V L VT + + +L G H W
Sbjct: 177 AWSFPSEPV--KLLVTGDIENTSLAPE---DPTFPADTWGTYLLTTETGLQKDHALW 228
>1gsm_A Madcam-1, mucosal addressin cell adhesion molecule-1; cell adhesion
protein, immunoglobulin fold, I-SET fold, cell adhesion
glycoprotein; 1.9A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4
PDB: 1bqs_A*
Length = 210
Score = 43.7 bits (102), Expect = 2e-05
Identities = 24/158 (15%), Positives = 39/158 (24%), Gaps = 23/158 (14%)
Query: 32 TVHAPPSFVVRPQDQKVGLN--GIASFQCVAEGS-PLPSVFWTQEGSQVLMFPGNAYGHL 88
++ P V P + V + C + SV W + +
Sbjct: 2 SLQVKP-LQVEPPEPVVAVALGASRQLTCRLACADRGASVQWRGLDTSL-------GAVQ 53
Query: 89 HVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVTSVEDTPPPIVQVGPSNQTL 148
T L ++ AG VC + L V + P + V P+
Sbjct: 54 SDTGRSVLTVRNASLSAAGTRVCVGSCGGRTFQHTVQLLVYAF----PNQLTVSPAA--- 106
Query: 149 PLHSVAFLPCQAVGSPPP-----HIRWYKNGNSLPPED 181
+ + C A P G L
Sbjct: 107 LVPGDPEVACTAHKVTPVDPNALSFSLLVGGQELEGAQ 144
Score = 30.6 bits (68), Expect = 0.46
Identities = 16/81 (19%), Positives = 19/81 (23%), Gaps = 7/81 (8%)
Query: 2 ITEVKKSDEGKYQCYVQNMVGERETKPALLTVHAPPSFVVRPQDQKVGLNGIASFQCVAE 61
+ S G C + LL P V P + G C A
Sbjct: 63 VRNASLSAAGTRVCVGSCGGRTFQHTVQLLVYAFPNQLTVSPAAL---VPGDPEVACTAH 119
Query: 62 G----SPLPSVFWTQEGSQVL 78
P F G Q L
Sbjct: 120 KVTPVDPNALSFSLLVGGQEL 140
Score = 26.8 bits (58), Expect = 8.6
Identities = 6/34 (17%), Positives = 10/34 (29%)
Query: 202 RAEPKDTRVASGETALLECGPPKGQPEPTLHWKK 235
VA G + L C ++ W+
Sbjct: 11 EPPEPVVAVALGASRQLTCRLACADRGASVQWRG 44
>3p2t_A Leukocyte immunoglobulin-like receptor subfamily 4; LILR, IG,
inhibitory receptor, disulfide, immune system; 1.70A
{Homo sapiens}
Length = 196
Score = 42.9 bits (101), Expect = 3e-05
Identities = 33/166 (19%), Positives = 51/166 (30%), Gaps = 18/166 (10%)
Query: 27 KPALLTVHAPPSFVVRPQDQKVGLNGIASFQCVAEGSPLPSVF-WTQEGSQVLMFPGNAY 85
KP L A P V+ V + C +G+ + +E S N
Sbjct: 5 KPTLW---AEPGSVI-SWGNSV------TIWC--QGTLEAREYRLDKEESPAPWDRQN-- 50
Query: 86 GHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVTSVEDTPPPIVQVGPSN 145
L + I + ++ AG + C S G + L++ P + PS
Sbjct: 51 -PLEPKNKARFSIPSMTEDYAGRYRCYYRSPVGWSQPSDPLELVMTGAYSKPTLSALPSP 109
Query: 146 QTLPLHSVAFLPCQAVGSPPPHIRWYKNGNSLPPEDTRINVSSSGS 191
SV L CQ+ SP K + P R +
Sbjct: 110 LVTSGKSVT-LLCQS-RSPMDTFLLCKERAAHPLLCLRSEHGAQQH 153
Score = 41.4 bits (97), Expect = 1e-04
Identities = 20/115 (17%), Positives = 41/115 (35%), Gaps = 7/115 (6%)
Query: 2 ITEVKKSDEGKYQCYVQNMVGERET-KPALLTV---HAPPSFVVRPQDQKVGLNGIASFQ 57
I + + G+Y+CY ++ VG + P L + ++ P+ P V +
Sbjct: 62 IPSMTEDYAGRYRCYYRSPVGWSQPSDPLELVMTGAYSKPTLSALP-SPLVTSGKSVTLL 120
Query: 58 CVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCS 112
C + SP+ + +E + + + Q + V G + C
Sbjct: 121 CQSR-SPMDTFLLCKERAAHPLLCLRSEHGAQQHQ-AEFPMSPVTSVHGGTYRCF 173
>1z9m_A GAPA225; nectin-like, IG-like domain, V domain, cell adhesion;
2.40A {Homo sapiens}
Length = 145
Score = 42.1 bits (98), Expect = 3e-05
Identities = 21/113 (18%), Positives = 37/113 (32%), Gaps = 10/113 (8%)
Query: 34 HAPPSFVVRPQDQKVGLNGIASFQCVAEGSPLPSVFWTQEGSQVLMFPGNAYGH------ 87
+ D+ V G +C + S+ W+ Q L F
Sbjct: 36 LSQDDSQPWTSDETVVAGGTVVLKCQVKDHEDSSLQWSNPAQQTLYFGEKRALRDNRIQL 95
Query: 88 LHVTQ-EGTLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVTSVEDTPPPIV 139
+ T E ++ I V D G + CS ++ T + + V + PI+
Sbjct: 96 VTSTPHELSISISNVALADEGEYTCSIFTMPVRTAK-SLVTV--LGIPQKPII 145
Score = 35.9 bits (82), Expect = 0.004
Identities = 13/37 (35%), Positives = 19/37 (51%), Gaps = 2/37 (5%)
Query: 2 ITEVKKSDEGKYQCYVQNMVGERETKPALLTVHAPPS 38
I+ V +DEG+Y C + M T +L+TV P
Sbjct: 107 ISNVALADEGEYTCSIFTM--PVRTAKSLVTVLGIPQ 141
Score = 30.5 bits (68), Expect = 0.35
Identities = 15/70 (21%), Positives = 24/70 (34%), Gaps = 12/70 (17%)
Query: 143 PSNQTLPLHSVAFLPCQAVGSPPPHIRWYKN-------GNSLPPEDTRINVSSSG----S 191
S++T+ L CQ ++W G D RI + +S S
Sbjct: 45 TSDETVVAGGTVVLKCQVKDHEDSSLQWSNPAQQTLYFGEKRALRDNRIQLVTSTPHELS 104
Query: 192 LQI-DVLRDD 200
+ I +V D
Sbjct: 105 ISISNVALAD 114
Score = 29.4 bits (65), Expect = 0.68
Identities = 14/60 (23%), Positives = 24/60 (40%), Gaps = 1/60 (1%)
Query: 181 DTRINVSSSGSLQIDVLRDDFRAEPKDTRVASGETALLECGPPKGQPEPTLHWKKNGQFI 240
D + I++ +DD + D V +G T +L+C K + +L W Q
Sbjct: 21 DLGTDDDDKAMADINLSQDDSQPWTSDETVVAGGTVVLKC-QVKDHEDSSLQWSNPAQQT 79
>3q0h_A T cell immunoreceptor with IG and ITIM domains; immune receptor,
adhesion, structural genomics, NEW YORK STR genomics
research consortium, nysgrc; 1.70A {Homo sapiens} PDB:
3rq3_A 3udw_A* 3ucr_A
Length = 117
Score = 41.1 bits (96), Expect = 5e-05
Identities = 18/115 (15%), Positives = 35/115 (30%), Gaps = 16/115 (13%)
Query: 40 VVRPQDQKVGLNGIASFQCVAEGSPLP--SVFWTQEGSQVLMFPGN-------AY-GHLH 89
+ + G QC + V W Q+ + + + ++ +
Sbjct: 7 IETTGNISAEKGGSIILQCHLSSTTAQVTQVNWEQQDQLLAICNADLGWHISPSFKDRVA 66
Query: 90 VTQEGTLRIQGVQKEDAGFFVCS-ALSVAGSTTVRAFLQVTSVEDTPPPIVQVGP 143
L +Q + D G + C G+ T R FL+V + + G
Sbjct: 67 PGPGLGLTLQSLTVNDTGEYFCIYHTYPDGTYTGRIFLEV-----LESSVAEHGA 116
Score = 36.8 bits (85), Expect = 0.002
Identities = 7/43 (16%), Positives = 12/43 (27%)
Query: 2 ITEVKKSDEGKYQCYVQNMVGERETKPALLTVHAPPSFVVRPQ 44
+ + +D G+Y C T L V +
Sbjct: 75 LQSLTVNDTGEYFCIYHTYPDGTYTGRIFLEVLESSVAEHGAR 117
Score = 28.7 bits (64), Expect = 0.85
Identities = 9/75 (12%), Positives = 17/75 (22%), Gaps = 15/75 (20%)
Query: 138 IVQVGPSNQTLPLHSVAFLPCQAVGSPPP--HIRWYKNGNSL------------PPEDTR 183
++ N + L C + + W + L P R
Sbjct: 6 TIET-TGNISAEKGGSIILQCHLSSTTAQVTQVNWEQQDQLLAICNADLGWHISPSFKDR 64
Query: 184 INVSSSGSLQIDVLR 198
+ L + L
Sbjct: 65 VAPGPGLGLTLQSLT 79
>1ow0_A IG alpha-1 chain C region; IGA1, fcari, CD89, antibody,
immunoglobulin-LIK immune system; HET: NAG FUL BMA GAL
SIA FUC MAN NDG; 3.10A {Homo sapiens} SCOP: b.1.1.2
b.1.1.2 PDB: 2qej_A*
Length = 214
Score = 42.5 bits (100), Expect = 5e-05
Identities = 34/157 (21%), Positives = 52/157 (33%), Gaps = 20/157 (12%)
Query: 37 PS-FVVRPQDQKVGLNGIASFQCVAEGSPLPS---VFWTQEGSQVLM------FPGNAYG 86
P + RP + + L A+ C G S WT + + Y
Sbjct: 4 PRLSLHRPALEDLLLGSEANLTCTLTGLRDASGVTFTWTPSSGKSAVQGPPERDLCGCY- 62
Query: 87 HLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVTSVEDTPPPIVQV-GPSN 145
+ L F C+A T + A L + +T P V + P +
Sbjct: 63 ----SVSSVLPGCAEPWNHGKTFTCTAAYPESKTPLTATLSKS--GNTFRPEVHLLPPPS 116
Query: 146 QTLPLHSVAFLPCQAVGSPPPHI--RWYKNGNSLPPE 180
+ L L+ + L C A G P + RW + LP E
Sbjct: 117 EELALNELVTLTCLARGFSPKDVLVRWLQGSQELPRE 153
>2rcj_C Light chain; immunoglobulin M, polymeric antibodies, immunology,
X-RAY solution scattering, constrained modelling, immune
system; NMR {Homo sapiens}
Length = 523
Score = 43.3 bits (102), Expect = 6e-05
Identities = 29/173 (16%), Positives = 52/173 (30%), Gaps = 13/173 (7%)
Query: 13 YQCYVQNMVGERETKPALLTVHAPPSFVVRP-QDQKVGLNGIASFQCVAEG----SPLPS 67
Y C V + + + + P F+ P + ++ CV P
Sbjct: 295 YICNVNHKPSNTKVDKRVEPLSLPSVFLFPPKPKDTLMISRTPEVTCVVVDVSHEDPQVK 354
Query: 68 VFWTQEGSQVL----MFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVR 123
W +G QV Y + L + D + C + A +
Sbjct: 355 FNWYVDGVQVHNAKTKPREQQYNSTY-RVVSVLTVLHQNWLDGKEYKCKVSNKALPAPIE 413
Query: 124 AFLQVTSVEDTPPPIVQVGPSNQTLPLHSVAFLPCQAVG-SPPP-HIRWYKNG 174
+ + P + + PS + + + V+ L C G P + W NG
Sbjct: 414 KTISKAKGQPREPQVYTLPPSREEMTKNQVS-LTCLVKGFYPSDIAVEWESNG 465
Score = 33.7 bits (77), Expect = 0.076
Identities = 17/88 (19%), Positives = 36/88 (40%), Gaps = 6/88 (6%)
Query: 95 TLRIQGVQKEDAGFFVCSALSVAGSTTVRAF---LQVTSVEDTPPPIVQVGPSNQTLPLH 151
+L I G++ ED + C++ + + ++ V + V P + PS++ L +
Sbjct: 71 SLAISGLEAEDESDYYCASWNSSDNSYVFGTGTKVTVLGQPKANPTVTLFPPSSEELQAN 130
Query: 152 SVAFLPCQAVG-SPPPH-IRWYKNGNSL 177
L C P + W +G+ +
Sbjct: 131 KAT-LVCLISDFYPGAVTVAWKADGSPV 157
Score = 33.3 bits (76), Expect = 0.090
Identities = 34/195 (17%), Positives = 58/195 (29%), Gaps = 27/195 (13%)
Query: 2 ITEVKKSDEGKYQCYVQN------MVGERETKPALLTVHAPPSFVVRPQDQKVGLNGIAS 55
I+ ++ DE Y C N + G L A P+ + P + A+
Sbjct: 74 ISGLEAEDESDYYCASWNSSDNSYVFGTGTKVTVLGQPKANPTVTLFPPSSEELQANKAT 133
Query: 56 FQCVAEG-SPLP-SVFWTQEG----SQVLMFP-----GNAYGHLHVTQEGTLRIQGVQKE 104
C+ P +V W +G + V N Y L + Q +
Sbjct: 134 LVCLISDFYPGAVTVAWKADGSPVKAGVETTKPSKQSNNKY-----AASSYLSLTPEQWK 188
Query: 105 DAGFFVCSALSVAGSTTVRAFLQVTSVEDTPPPIVQVGPSNQTLPLHSVAFLPCQAVG-S 163
+ C + S P + + PS+++ + A C
Sbjct: 189 SHRSYSCQVTHEGSTVEKTVAPTECSASTKGPSVFPLAPSSKSTSGGTAALG-CLVKDYF 247
Query: 164 PPPH-IRWYKNGNSL 177
P P + W N +L
Sbjct: 248 PQPVTVSW--NSGAL 260
>1oll_A NK receptor; immune system/receptor, NK cell triggering receptor,
immune system, IG domain, cytotoxicity, C2-type IG-like
domains; 1.93A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4
Length = 188
Score = 42.1 bits (99), Expect = 6e-05
Identities = 26/157 (16%), Positives = 45/157 (28%), Gaps = 16/157 (10%)
Query: 27 KPALLTVHAPPSFVVRPQDQKVGLNGIASFQCVAEGSPLPSVFWTQEGSQVLMFPGNAYG 86
KP + A P F+V P++++V + C EGS +
Sbjct: 4 KP---FIWAEPHFMV-PKEKQV------TICCQGN-YGAVEYQLHFEGSLFAVDRPKPPE 52
Query: 87 HLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVTSVEDTPPPIVQVGPSNQ 146
+ I + AG + C + L + E P + V P +
Sbjct: 53 R---INKVKFYIPDMNSRMAGQYSCIYRVGELWSEPSNLLDLVVTEMYDTPTLSVHPGPE 109
Query: 147 TLPLHSVAFLPCQAVGSPPPHIRWYKNGNSLPPEDTR 183
+ V C+ + K G S +
Sbjct: 110 VISGEKVT-FYCRL-DTATSMFLLLKEGRSSHVQRGY 144
Score = 40.2 bits (94), Expect = 2e-04
Identities = 15/115 (13%), Positives = 30/115 (26%), Gaps = 10/115 (8%)
Query: 2 ITEVKKSDEGKYQCYVQNMVGERET-KPALLTVHA--PPSFVVRPQDQKVGLNGIASFQC 58
I ++ G+Y C + E L V + +V +F C
Sbjct: 61 IPDMNSRMAGQYSCIYRVGELWSEPSNLLDLVVTEMYDTPTLSVHPGPEVISGEKVTFYC 120
Query: 59 VAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSA 113
+ + +EG + + + + V G + C
Sbjct: 121 RLD-TATSMFLLLKEGRS------SHVQRGYGKVQAEFPLGPVTTAHRGTYRCFG 168
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 43.1 bits (101), Expect = 8e-05
Identities = 58/362 (16%), Positives = 98/362 (27%), Gaps = 150/362 (41%)
Query: 23 ERETKPALL-TVHAPPSFVVRPQDQKVGLNGIASFQ--CVAEGSPLPSVFWTQEGSQVLM 79
P + P S P +G+ +A + G +T
Sbjct: 221 NPSNTPDKDYLLSIPISC---PL---IGVIQLAHYVVTAKLLG-------FT-------- 259
Query: 80 FPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRAFL------------- 126
PG +L T QG+ +A+++A + + +F
Sbjct: 260 -PGELRSYLKGA---TGHSQGLV---------TAVAIAETDSWESFFVSVRKAITVLFFI 306
Query: 127 -----QVTSVEDTPPPIVQ----VG---PS--------------------NQTLPLHSVA 154
+ PP I++ PS N LP
Sbjct: 307 GVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQV 366
Query: 155 FL-----PCQAVGSPPP--------HIRWYKNGNS-------------------LP---P 179
+ V S PP +R K + LP P
Sbjct: 367 EISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFLPVASP 426
Query: 180 EDTRINVSSSGSLQIDVLRDD--FRAE----P-------KDTRVASGE--TALLEC---G 221
+ + V +S + D+++++ F A+ P D RV SG +++C
Sbjct: 427 FHSHLLVPASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSDLRVLSGSISERIVDCIIRL 486
Query: 222 PPKGQPEPTLHWKKNGQF-----IDLE--SSKRVSILGDPWFDSRRSRSIFGSVLGALSD 274
P + W+ QF +D + + +L D R I L D
Sbjct: 487 P--------VKWETTTQFKATHILDFGPGGASGLGVLTHRNKDGTGVRVIVAGTLDINPD 538
Query: 275 DQ 276
D
Sbjct: 539 DD 540
Score = 40.8 bits (95), Expect = 5e-04
Identities = 43/259 (16%), Positives = 82/259 (31%), Gaps = 85/259 (32%)
Query: 6 KKSDEGKYQCY---VQNMVGERETKPALLTVHAPPSFVVRPQDQKVGLNGIA-SFQCVAE 61
++D Y + ++V P LT+H + +++ N A F+ + +
Sbjct: 1647 NRADNHFKDTYGFSILDIVIN---NPVNLTIHFGG-----EKGKRIRENYSAMIFETIVD 1698
Query: 62 GSPLP-SVFWT-QEGSQVLMFPGNAYGHLHVTQ--------------EGTLRIQGVQKED 105
G +F E S F G L TQ E L+ +G+ D
Sbjct: 1699 GKLKTEKIFKEINEHSTSYTFRSEK-GLLSATQFTQPALTLMEKAAFE-DLKSKGLIPAD 1756
Query: 106 AGF-------FVCSAL-SVAG----STTVR------AFLQVTSVED----TPPPIVQVGP 143
A F + +AL S+A + V +QV D + ++ + P
Sbjct: 1757 ATFAGHSLGEY--AALASLADVMSIESLVEVVFYRGMTMQVAVPRDELGRSNYGMIAINP 1814
Query: 144 SN--QTLPLHSVAFLPCQAVGSPPPHIRWYKNGNSLPPEDTRINVSSSGSLQIDVLRDDF 201
+ ++ ++ + VG + G + +N + Q
Sbjct: 1815 GRVAASFSQEALQYV-VERVGK--------RTGWLVEI----VNYNVENQ-QY------- 1853
Query: 202 RAEPKDTRVASGETALLEC 220
VA+G+ L+
Sbjct: 1854 --------VAAGDLRALDT 1864
Score = 31.2 bits (70), Expect = 0.47
Identities = 23/139 (16%), Positives = 40/139 (28%), Gaps = 40/139 (28%)
Query: 173 NGNSLPP--------EDTRINVSSSGSLQIDVLRDDFRA---EPKDTRVASGETALLECG 221
+ S P E + V ++ L++ F EP + A E
Sbjct: 2 DAYSTRPLTLSHGSLEHV-LLVPTASFFIASQLQEQFNKILPEPTEGFAADDE------- 53
Query: 222 PPKGQPE----------PTLHWKKNGQFIDLESSKRVSILGDPWFDSR--RSRSIFGSVL 269
P E + K GQF + + L + F++ I
Sbjct: 54 -PTTPAELVGKFLGYVSSLVEPSKVGQFDQVLN----LCLTE--FENCYLEGNDIHALAA 106
Query: 270 GALSDDQWKLIAKN--IRN 286
L ++ L+ I+N
Sbjct: 107 KLLQENDTTLVKTKELIKN 125
Score = 28.1 bits (62), Expect = 4.2
Identities = 34/217 (15%), Positives = 62/217 (28%), Gaps = 81/217 (37%)
Query: 3 TEVKKSDEGKYQCYVQNMVGERETKPALLT---VHAPPSFVVR-PQDQKVGL----NGIA 54
+ V+ S G++ + + E E L +H + + Q+ L I
Sbjct: 70 SLVEPSKVGQFDQVLNLCLTEFEN--CYLEGNDIH---ALAAKLLQENDTTLVKTKELIK 124
Query: 55 SF--QCVAEGSPL----PSVFWT--QEGSQVLM--FPGNAYGHLHVTQEGTLRIQGVQKE 104
++ + P S + EG+ L+ F G QG
Sbjct: 125 NYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGG----------------QG---- 164
Query: 105 DAGFFVCSALSVAGSTTVRAF--LQVTSVEDTPPPIVQ--VGPSNQTL-PLHSVAFLPCQ 159
T F L+ + T +V + S +TL L +
Sbjct: 165 ---------------NTDDYFEELR--DLYQTYHVLVGDLIKFSAETLSEL-------IR 200
Query: 160 AVGSPPPH-------IRWYKNGNSLPPED--TRINVS 187
+ W +N ++ P +D I +S
Sbjct: 201 TTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPIS 237
>2vol_A Murine IGG FC; FC, zinc, B30.2, nucleus, pryspry, cytoplasm, mouse
IGG, zinc-finger, DNA-binding, RNA-binding, tripartite
motif (TRIM) protein; HET: NAG MAN GAL FUC; 1.95A {Mus
musculus} PDB: 3hkf_A 1i1a_C* 1cqk_A
Length = 207
Score = 41.4 bits (97), Expect = 1e-04
Identities = 24/149 (16%), Positives = 38/149 (25%), Gaps = 15/149 (10%)
Query: 36 PPSFVVRPQDQKVGLNGIASFQCVAEGS----PLPSVFWTQEGSQVLMF-PGNAYGHLHV 90
PP + + CV P W + +V +
Sbjct: 8 PPKP-----KDVLTITLTPKVTCVVVDISKDDPEVQFSWFVDDVEVHTAQTKPREEQFNS 62
Query: 91 TQ--EGTLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVTSVEDTPPPIVQVGPSNQTL 148
T L I + F C S A + + T P + + P + +
Sbjct: 63 TFRSVSELPIMHQDWLNGKEFKCRVNSAAFPAPIEKTISKTKGRPKAPQVYTLPPPKEQM 122
Query: 149 PLHSVAFLPCQAVG-SPPP-HIRWYKNGN 175
V+ L C P + W NG
Sbjct: 123 AKDKVS-LTCMITDFFPEDITVEWESNGQ 150
>1jbj_A CD3 epsilon and gamma ectodomain fragment complex; beta-sheet,
C2-SET immunoglobulin superfamily, H-bonded G strand
PAIR, single-chain; NMR {Mus musculus} SCOP: b.1.1.4
b.1.1.4 PDB: 1xmw_A
Length = 186
Score = 41.0 bits (95), Expect = 1e-04
Identities = 26/160 (16%), Positives = 53/160 (33%), Gaps = 35/160 (21%)
Query: 56 FQCVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALS 115
C + ++ W + G ++ P HL + + ED+G++VC +
Sbjct: 19 LTCPLDSDE--NLKWEKNGQEL---PQKHDKHLVLQD-------FSEVEDSGYYVCYTPA 66
Query: 116 VAGSTTVRAFLQVTSVEDTPPPIVQVGPSNQTLPLHSVA--------------------F 155
+T + +V S +D + + + +
Sbjct: 67 SNKNTYLYLKARVGSADDAKKDAAKKDDAKKDDAKKDGSQTNKAKNLVQVDGSRGDGSVL 126
Query: 156 LPCQAVGSPPPHIRWYKNGNSLPPEDTRINVSSSGSLQID 195
L C G I+W K+G+ + P + N + G+ D
Sbjct: 127 LTC---GLTDKTIKWLKDGSIISPLNATKNTWNLGNNAKD 163
Score = 32.5 bits (73), Expect = 0.087
Identities = 14/49 (28%), Positives = 24/49 (48%), Gaps = 4/49 (8%)
Query: 203 AEPKDTRVA-SGETALLECGPPKGQPEPTLHWKKNGQFIDLESSKRVSI 250
AE + +V+ SG + L C + L W+KNGQ + + K + +
Sbjct: 3 AENIEYKVSISGTSVELTC---PLDSDENLKWEKNGQELPQKHDKHLVL 48
Score = 26.8 bits (58), Expect = 6.4
Identities = 17/138 (12%), Positives = 29/138 (21%), Gaps = 36/138 (26%)
Query: 8 SDEGKYQCYVQNMVGER------------------------ETKPALLTVHAPPSFVVRP 43
D G Y CY + A
Sbjct: 55 EDSGYYVCYTPASNKNTYLYLKARVGSADDAKKDAAKKDDAKKDDAKKDGSQTNKAKNLV 114
Query: 44 QDQKVGLNGIASFQCVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQK 103
Q +G C G ++ W ++GS + + T + K
Sbjct: 115 QVDGSRGDGSVLLTC---GLTDKTIKWLKDGSIISPLNAT---------KNTWNLGNNAK 162
Query: 104 EDAGFFVCSALSVAGSTT 121
+ G + C +
Sbjct: 163 DPRGTYQCQGAKETSNPL 180
>1pko_A Myelin oligodendrocyte glycoprotein; IGV-domain, immune system;
1.45A {Rattus norvegicus} SCOP: b.1.1.1 PDB: 1pkq_E
3csp_A 1py9_A
Length = 139
Score = 39.9 bits (93), Expect = 1e-04
Identities = 12/51 (23%), Positives = 22/51 (43%), Gaps = 1/51 (1%)
Query: 2 ITEVKKSDEGKYQCYVQNMVGERETKPALLTVHAPPSFVVRPQDQKVGLNG 52
I V+ SDEG Y C+ ++ + E L V P ++ + + +
Sbjct: 89 IQNVRFSDEGGYTCFFRDHSYQEEAA-VELKVEDPFYWINPGRSRSHHHHH 138
Score = 29.1 bits (65), Expect = 0.88
Identities = 17/75 (22%), Positives = 24/75 (32%), Gaps = 8/75 (10%)
Query: 72 QEGSQVLMFPGNAYGHLHVTQEG--TLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVT 129
Q+ Q + G EG LRIQ V+ D G + C + L+V
Sbjct: 61 QDAEQAPEYRGRTELLKESIGEGKVALRIQNVRFSDEGGYTCFFRDHSYQEEAAVELKVE 120
Query: 130 SVEDTPPPIVQVGPS 144
P + P
Sbjct: 121 D------PFYWINPG 129
>1iam_A ICAM-1, CD54, intercellular adhesion molecule-1; rhinovirus
receptor, cell adhesion, integrin ligand, glycopr LFA-1
ligand, immunoglobulin fold; HET: NAG; 2.10A {Homo
sapiens} SCOP: b.1.1.3 b.1.1.4 PDB: 1ic1_A* 1d3l_A
1d3e_I 1d3i_I 3tcx_A
Length = 185
Score = 40.9 bits (95), Expect = 2e-04
Identities = 30/168 (17%), Positives = 51/168 (30%), Gaps = 19/168 (11%)
Query: 41 VRPQDQKVGLNGIASFQCVAEGSPLPSVFW-TQEGSQVLMFPGNAYGHLHVTQEGTLRIQ 99
V P + G C + T + L+ PGN +
Sbjct: 4 VSPSKVILPRGGSVLVTCSTSCDQPKLLGIETPLPKKELLLPGN----------NRKVYE 53
Query: 100 GVQKEDAGFFVCSALSVAGSTTVRAFLQVTSVEDTPPPIVQVGPSNQTLPLHSVAFLPCQ 159
++ +C + G +T + FL V P V++ P P+ L CQ
Sbjct: 54 LSNVQEDSQPMCYSNCPDGQSTAKTFLTVY----WTPERVELAPLPSWQPVGKQLTLRCQ 109
Query: 160 AVGSPPPH---IRWYKNGNSLPPEDTRINVSSSGSLQIDVLRDDFRAE 204
G P + + L E + + + + V RD A+
Sbjct: 110 VEGGAPRAQLTVVLLRGEKELKRE-PAVGEPAEVTTTVLVRRDHHGAQ 156
Score = 36.6 bits (84), Expect = 0.004
Identities = 18/110 (16%), Positives = 35/110 (31%), Gaps = 10/110 (9%)
Query: 8 SDEGKYQCYVQNMVGERETKPALLTVHAPPSFV-VRPQDQKVGLNGIASFQC-VAEGSPL 65
++ + CY + T LTV+ P V + P + + +C V G+P
Sbjct: 58 QEDSQPMCYSNC-PDGQSTAKTFLTVYWTPERVELAPLPSWQPVGKQLTLRCQVEGGAPR 116
Query: 66 P--SVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSA 113
+V + ++ + E T + + F C
Sbjct: 117 AQLTVVLLRGEKEL-----KREPAVGEPAEVTTTVLVRRDHHGAQFSCRT 161
Score = 26.6 bits (58), Expect = 8.2
Identities = 17/133 (12%), Positives = 28/133 (21%), Gaps = 27/133 (20%)
Query: 139 VQVGPSNQTLPLHSVAFLPCQAVGSPPPHIRWYKNGNSLPPEDTRINVSS---------- 188
V PS LP + C P + N
Sbjct: 2 TSVSPSKVILPRGGSVLVTCSTSCDQPKLLGIETPLPKKELLLPGNNRKVYELSNVQEDS 61
Query: 189 -------------SGSLQIDVLR--DDFRAEPKDTRVASGETALLECGPPKGQPEP--TL 231
+ + V + P + G+ L C G P T+
Sbjct: 62 QPMCYSNCPDGQSTAKTFLTVYWTPERVELAPLPSWQPVGKQLTLRCQVEGGAPRAQLTV 121
Query: 232 HWKKNGQFIDLES 244
+ + + E
Sbjct: 122 VLLRGEKELKREP 134
>1bec_A 14.3.D T cell antigen receptor; T cell receptor; 1.70A {Mus
musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1jck_A 1l0x_A
1sbb_A 1l0y_A 3c6l_B 1mwa_B* 1g6r_B* 1tcr_B* 2ckb_B
2q86_B* 1lp9_F 2j8u_F 2jcc_F 2uwe_F 3mbe_D* 1d9k_B*
2aq3_A 3mc0_A 3byt_A 3bzd_A ...
Length = 238
Score = 41.1 bits (96), Expect = 2e-04
Identities = 21/94 (22%), Positives = 35/94 (37%), Gaps = 9/94 (9%)
Query: 94 GTLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVTSV-------EDTPPPIVQVGPSNQ 146
+L ++ + C++ GS + F T + + TPP + PS
Sbjct: 72 FSLILELATPSQTSVYFCASGGGRGSYAEQFFGPGTRLTVLEDLRQVTPPKVSLFEPSKA 131
Query: 147 TLPLHSVAFLPCQAVGSPPPHIR--WYKNGNSLP 178
+ A L C A G P H+ W+ NG +
Sbjct: 132 EIANKQKATLVCLARGFFPDHVELSWWVNGKEVH 165
>2gi7_A GPVI protein; IG-like domains, blood clotting, cell adhesion; 2.40A
{Homo sapiens}
Length = 184
Score = 40.6 bits (95), Expect = 2e-04
Identities = 24/116 (20%), Positives = 36/116 (31%), Gaps = 12/116 (10%)
Query: 2 ITEVKKSDEGKYQCYVQNMVGERET-KPALLTV---HAPPSFVVRPQDQKVGLNGIASFQ 57
I +K+S G+Y+C QN L A PS +P V G + Q
Sbjct: 56 IPAMKRSLAGRYRCSYQNGSLWSLPSDQLELVATGVFAKPSLSAQP-GPAVSSGGDVTLQ 114
Query: 58 CVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSA 113
C +EG Y + + I V +G + C +
Sbjct: 115 CQTR-YGFDQFALYKEGDPAP------YKNPERWYRASFPIITVTAAHSGTYRCYS 163
Score = 37.9 bits (88), Expect = 0.001
Identities = 16/98 (16%), Positives = 31/98 (31%), Gaps = 2/98 (2%)
Query: 86 GHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVTSVEDTPPPIVQVGPSN 145
+ L I +++ AG + CS + + + L++ + P + P
Sbjct: 44 SSSRYQDQAVLFIPAMKRSLAGRYRCSYQNGSLWSLPSDQLELVATGVFAKPSLSAQPGP 103
Query: 146 QTLPLHSVAFLPCQAVGSPPPHIRWYKNGNSLPPEDTR 183
V CQ YK G+ P ++
Sbjct: 104 AVSSGGDVTLQ-CQT-RYGFDQFALYKEGDPAPYKNPE 139
>2w59_A IGY FCU3-4; immunoglobulin, avian, immune system; HET: NAG MAN;
1.75A {Gallus gallus}
Length = 231
Score = 40.8 bits (95), Expect = 2e-04
Identities = 31/156 (19%), Positives = 55/156 (35%), Gaps = 10/156 (6%)
Query: 35 APPS-FVVRPQDQKVGLNGIASFQCVAEGSPLPS---VFWTQEGS-QVLMFPGNAYGHLH 89
+P + + P ++ ++ A +C+ P S V WT+E S + P H +
Sbjct: 11 SPIQLYAIPPSPGELYISLDAKLRCLVVNLPSDSSLSVTWTREKSGNLRPDPMVLQEHFN 70
Query: 90 VTQ--EGTLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVTSVEDTPPPIVQVGPSNQT 147
T + + F C+ + + + TPP I P +
Sbjct: 71 GTYSASSAVPVSTQDWLSGERFTCTVQHEELPLPLSKSVYRNTGPTTPPLIYPFAPHPEE 130
Query: 148 LPLHSVAFLPCQAVGSPPP--HIRWYKNGNSLPPED 181
L L V C G P IRW ++ ++P +
Sbjct: 131 LSLSRVTLS-CLVRGFRPRDIEIRWLRDHRAVPATE 165
Score = 28.8 bits (64), Expect = 1.6
Identities = 11/68 (16%), Positives = 18/68 (26%), Gaps = 4/68 (5%)
Query: 128 VTSVEDTPPPIVQV-GPSNQTLPLHSVAFLPCQAVGSPPP---HIRWYKNGNSLPPEDTR 183
+ P + PS L + A L C V P + W + + D
Sbjct: 4 PDGAQSCSPIQLYAIPPSPGELYISLDAKLRCLVVNLPSDSSLSVTWTREKSGNLRPDPM 63
Query: 184 INVSSSGS 191
+
Sbjct: 64 VLQEHFNG 71
>1i1c_A IGG2A, IG gamma-2A chain C region; FC, immune system; HET: NAG FUL
BMA MAN FUC; 2.70A {Rattus norvegicus} SCOP: b.1.1.2
b.1.1.2 PDB: 1i1a_D*
Length = 239
Score = 40.7 bits (95), Expect = 2e-04
Identities = 23/154 (14%), Positives = 36/154 (23%), Gaps = 25/154 (16%)
Query: 36 PPSFVVRPQDQKVGLNGIASFQCVAEGSPLP----SVFWTQEGSQVLM--------FPGN 83
PP +G CV W + +V +
Sbjct: 22 PPKT-----KDVLGGGLTPKVTCVVVDISQNDPEVRFSWFIDDVEVHTAQTHAPEKQSNS 76
Query: 84 AYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVTSVEDTPPPIVQVGP 143
L I + F C S A + + P + + P
Sbjct: 77 TLR-----SVSELPIVERDWLNGKTFKCKVNSGAFPAPIEKSISKPEGTPRGPQVYTMAP 131
Query: 144 SNQTLPLHSVAFLPCQAVG-SPPP-HIRWYKNGN 175
+ + V+ C G PP + W NG
Sbjct: 132 PKEEMTQSQVSIT-CMVKGFYPPDIYTEWKMNGQ 164
>3qib_D 2B4 beta chain; IG domain, immune system; HET: NAG FUC BMA; 2.70A
{Mus musculus}
Length = 270
Score = 40.4 bits (94), Expect = 3e-04
Identities = 21/92 (22%), Positives = 34/92 (36%), Gaps = 8/92 (8%)
Query: 95 TLRIQGVQKEDAGFFVCSALSVAGSTTV------RAFLQVTSVEDTPPPIVQVGPSNQTL 148
+L IQ + D+ ++C++ T R + PP + PS +
Sbjct: 102 SLEIQSSEAGDSALYLCASSLNWSQDTQYFGPGTRLLVLEDLKNVFPPEVAVFEPSEAEI 161
Query: 149 PLHSVAFLPCQAVGSPPPHIR--WYKNGNSLP 178
A L C A G P H+ W+ NG +
Sbjct: 162 SHTQKATLVCLATGFYPDHVELSWWVNGKEVH 193
>2edo_A CD48 antigen; beta-sandwich, IG-fold, B-lymphocyte activation
marker blast-1, BCM1 surface antigen, leukocyte antigen
MEM-102, TCT.1; NMR {Homo sapiens}
Length = 121
Score = 38.4 bits (89), Expect = 5e-04
Identities = 18/113 (15%), Positives = 38/113 (33%), Gaps = 16/113 (14%)
Query: 44 QDQKVGLNGI----ASFQC-VAEGSPLPSVFW---------TQEGSQVLMFPGNAYGHLH 89
Q V + + + + + W + + F G +
Sbjct: 8 QGHLVHMTVVSGSNVTLNISESLPENYKQLTWFYTFDQKIVEWDSRKSKYFESKFKGRVR 67
Query: 90 V-TQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVTSVEDTPPPIVQV 141
+ Q G L I VQKED ++ L G+ ++ ++ P P++++
Sbjct: 68 LDPQSGALYISKVQKEDNSTYIMRVLKKTGNEQEWKI-KLQVLDPVPKPVIKI 119
Score = 36.4 bits (84), Expect = 0.002
Identities = 10/37 (27%), Positives = 14/37 (37%)
Query: 2 ITEVKKSDEGKYQCYVQNMVGERETKPALLTVHAPPS 38
I++V+K D Y V G + L V P
Sbjct: 77 ISKVQKEDNSTYIMRVLKKTGNEQEWKIKLQVLDPVP 113
Score = 29.1 bits (65), Expect = 0.77
Identities = 11/59 (18%), Positives = 15/59 (25%)
Query: 201 FRAEPKDTRVASGETALLECGPPKGQPEPTLHWKKNGQFIDLESSKRVSILGDPWFDSR 259
+ V SG L + L W +E R S + F R
Sbjct: 7 GQGHLVHMTVVSGSNVTLNISESLPENYKQLTWFYTFDQKIVEWDSRKSKYFESKFKGR 65
>3l5h_A Interleukin-6 receptor subunit beta; IG-like, FNIII, cell membrane,
disulfide bond, glycoprotein, immunoglobulin domain,
membrane, phosphoprotein; HET: NAG NDG BMA FUC; 3.60A
{Homo sapiens}
Length = 589
Score = 40.4 bits (94), Expect = 5e-04
Identities = 11/159 (6%), Positives = 28/159 (17%), Gaps = 36/159 (22%)
Query: 37 PSFVVRPQDQKVGLNGIASFQCV-------AEGSPLPSVFWTQEGSQVLMFPGNAYGHLH 89
P + P+ V L+ + CV + W + +
Sbjct: 4 PCGYISPESPVVQLHSNFTAVCVLKEKCMDYFHVNANYIVWKTNHFTI----PKEQYTII 59
Query: 90 VTQEGTLRIQGVQKEDAGF-FVCSALSVAGSTTVRAFLQVTSVEDTPPPIVQVGPSNQTL 148
++ + + + + P +
Sbjct: 60 NRTASSVTFTDIASLNIQLTCNILTFGQLEQNVYGITIISGLPPE-KPKNLS-------- 110
Query: 149 PLHSVAFLPCQAVGSPPPHIRWYKNGNSLPPEDTRINVS 187
C W +T + +
Sbjct: 111 ---------CIVNEGKKMRCEW------DGGRETHLETN 134
Score = 39.2 bits (91), Expect = 0.001
Identities = 12/67 (17%), Positives = 22/67 (32%), Gaps = 7/67 (10%)
Query: 141 VGPSNQTLPLHSVAFLPC-------QAVGSPPPHIRWYKNGNSLPPEDTRINVSSSGSLQ 193
+ P + + LHS C +I W N ++P E I ++ S+
Sbjct: 8 ISPESPVVQLHSNFTAVCVLKEKCMDYFHVNANYIVWKTNHFTIPKEQYTIINRTASSVT 67
Query: 194 IDVLRDD 200
+
Sbjct: 68 FTDIASL 74
Score = 35.8 bits (82), Expect = 0.017
Identities = 8/52 (15%), Positives = 12/52 (23%), Gaps = 6/52 (11%)
Query: 204 EPKDTRVASGETALLEC------GPPKGQPEPTLHWKKNGQFIDLESSKRVS 249
P+ V C + WK N I E ++
Sbjct: 9 SPESPVVQLHSNFTAVCVLKEKCMDYFHVNANYIVWKTNHFTIPKEQYTIIN 60
>3nvq_A Semaphorin-7A; beta-propeller, signaling, signaling protein-protein
binding; HET: NAG NDG; 2.40A {Homo sapiens}
Length = 590
Score = 40.0 bits (92), Expect = 6e-04
Identities = 13/81 (16%), Positives = 23/81 (28%), Gaps = 6/81 (7%)
Query: 33 VHAPPSFVVRPQDQKVGLNGIASFQCVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQ 92
P Q + N C E S + W + + + H +
Sbjct: 497 CPNPKPDKAPLQKVSLAPNSRYYLSCPME-SRHATYSWRHKEN-----VEQSCEPGHQSP 550
Query: 93 EGTLRIQGVQKEDAGFFVCSA 113
L I+ + + G + C A
Sbjct: 551 NCILFIENLTAQQYGHYFCEA 571
Score = 33.5 bits (75), Expect = 0.086
Identities = 6/50 (12%), Positives = 12/50 (24%), Gaps = 1/50 (2%)
Query: 151 HSVAFLPCQAVGSPPPHIRWYKNGNSLPPEDTRINVSSSGSLQIDVLRDD 200
+S +L C S W N + + ++
Sbjct: 515 NSRYYLSCPME-SRHATYSWRHKENVEQSCEPGHQSPNCILFIENLTAQQ 563
>1nkr_A P58-CL42 KIR; inhibitory receptor, natural killer cells,
immunological receptors, immunoglobulin fold; 1.70A
{Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1m4k_A 1efx_D
2dli_A 2dl2_A 3h8n_A
Length = 201
Score = 39.1 bits (91), Expect = 7e-04
Identities = 25/158 (15%), Positives = 44/158 (27%), Gaps = 21/158 (13%)
Query: 27 KPALLTVHAPPSFVVRPQDQKVGLNGIASFQCVAEGSPLPSVFWTQEGSQVLMFPGNAYG 86
KP+LL A P +V+ ++ QC + F
Sbjct: 8 KPSLL---AHPGPLVKSEET-------VILQC--WSDVMFEHFLLHREGMFNDTLRLIGE 55
Query: 87 HLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRAF-----LQVTSVEDTPPPIVQV 141
H + I + ++ AG + C V A + + + P +
Sbjct: 56 HHDGVSKANFSISRMTQDLAGTYRCYGSVTHSPYQVSAPSDPLDIVIIGL--YEKPSLSA 113
Query: 142 GPSNQTLPLHSVAFLPCQAVGSPPPHIRWYKNGNSLPP 179
P L +V L C + S + G +
Sbjct: 114 QPGPTVLAGENVT-LSCSS-RSSYDMYHLSREGEAHER 149
Score = 32.2 bits (73), Expect = 0.12
Identities = 14/81 (17%), Positives = 27/81 (33%), Gaps = 9/81 (11%)
Query: 2 ITEVKKSDEGKYQCYVQNMVGERET----KPALLTV---HAPPSFVVRPQDQKVGLNGIA 54
I+ + + G Y+CY + P + + + PS +P V
Sbjct: 67 ISRMTQDLAGTYRCYGSVTHSPYQVSAPSDPLDIVIIGLYEKPSLSAQP-GPTVLAGENV 125
Query: 55 SFQCVAEGSPLPSVFWTQEGS 75
+ C + S ++EG
Sbjct: 126 TLSCSSR-SSYDMYHLSREGE 145
>3pl6_D MBP peptide / T-cell receptor beta chain chimera; TCR-MHC complex,
immunoglobulin fold, immune receptor, membr immune
system; HET: NAG; 2.55A {Homo sapiens}
Length = 268
Score = 38.1 bits (88), Expect = 0.002
Identities = 24/89 (26%), Positives = 42/89 (47%), Gaps = 6/89 (6%)
Query: 95 TLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVTSVE---DTPPPIVQV-GPSNQTLPL 150
TL+IQ ++ D+ ++C+ ++ + ++T +E + PP V V PS +
Sbjct: 101 TLKIQRTERGDSAVYLCATSALGDTQYFGPGTRLTVLEDLKNVFPPEVAVFEPSEAEISH 160
Query: 151 HSVAFLPCQAVGSPPPHIR--WYKNGNSL 177
A L C A G P H+ W+ NG +
Sbjct: 161 TQKATLVCLATGFYPDHVELSWWVNGKEV 189
>4ei6_B Vbeta16 XV19 type II natural killer T cell recept variable domain,
human constant...; natural killer T cell receptor,
immune system; 1.60A {Mus musculus} PDB: 4ei5_D 4elk_B
4elm_F* 2esv_E 3ffc_E 3utt_E 3utp_E* 3uts_E 3qjf_B
3qjh_B 3qiw_D* 3qiu_D
Length = 245
Score = 38.1 bits (88), Expect = 0.002
Identities = 21/91 (23%), Positives = 32/91 (35%), Gaps = 8/91 (8%)
Query: 95 TLRIQGVQKEDAGFFVCSALSVAGSTTVRAF------LQVTSVEDTPPPIVQVGPSNQTL 148
TL+IQ ED+ + C++ + PP + PS +
Sbjct: 77 TLKIQPTALEDSAVYFCASSFWGAYAEQFFGPGTRLTVLEDLKNVFPPEVAVFEPSEAEI 136
Query: 149 PLHSVAFLPCQAVGSPPPHIR--WYKNGNSL 177
A L C A G P H+ W+ NG +
Sbjct: 137 SHTQKATLVCLATGFYPDHVELSWWVNGKEV 167
>3f8u_B Tapasin; endoplasmic reticulum, glycoprotein, immunoglobulin
domain, microsome, protein disulfide isomerase,
thioredoxin-like FO like domain; HET: NAG; 2.60A {Homo
sapiens}
Length = 401
Score = 38.1 bits (87), Expect = 0.002
Identities = 21/138 (15%), Positives = 33/138 (23%), Gaps = 12/138 (8%)
Query: 62 GSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTT 121
+ QEG+ + T GT + VQ G ++ +
Sbjct: 222 PGLNGQMPAAQEGAVAFAAWDDDEPWGPWTGNGTFWLPRVQPFQEGTYLATIHLPYLQGQ 281
Query: 122 VRAFLQVT---SVEDTPPPIVQVGPSNQTLPLHSVAFLPCQAVGSPPPH---IRWYKNGN 175
V L V V P + + P L C P + W G
Sbjct: 282 VTLELAVYKPPKVSLMPATLARAAPGEAPPELL------CLVSHFYPSGGLEVEWELRGG 335
Query: 176 SLPPEDTRINVSSSGSLQ 193
+L+
Sbjct: 336 PGGRSQKAEGQRWLSALR 353
Score = 32.7 bits (73), Expect = 0.15
Identities = 17/120 (14%), Positives = 28/120 (23%), Gaps = 14/120 (11%)
Query: 2 ITEVKKSDEGKYQCYVQNMVGERETKPALLTVHAPPSFVVRPQD--QKVGLNGIASFQCV 59
+ V+ EG Y + + + L V+ PP + P + C+
Sbjct: 258 LPRVQPFQEGTYLATIHLPYLQGQVT-LELAVYKPPKVSLMPATLARAAPGEAPPELLCL 316
Query: 60 AEG---SPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSV 116
S V W G G + D + L
Sbjct: 317 VSHFYPSGGLEVEWELRGGPG--------GRSQKAEGQRWLSALRHHSDGSVSLSGHLQP 368
>1l6x_A Immunoglobulin gamma-1 heavy chain constant regio; IGG1 FC, FC
complex, immune system; HET: NAG BMA MAN GAL FUL; 1.65A
{Homo sapiens} SCOP: b.1.1.2 b.1.1.2 PDB: 2iwg_A*
3v7m_A* 3d6g_A* 3agv_A* 1oqo_A* 1oqx_A* 3v95_A* 2wah_A*
3sgj_A* 3sgk_A* 2dtq_A* 2dts_A* 3ave_A* 3ay4_A* 3do3_A*
2gj7_A* 1t83_A* 1t89_A* 1dn2_A* 3dnk_A ...
Length = 207
Score = 37.2 bits (86), Expect = 0.003
Identities = 22/149 (14%), Positives = 40/149 (26%), Gaps = 15/149 (10%)
Query: 36 PPSFVVRPQDQKVGLNGIASFQCVAEGSPLP----SVFWTQEGSQVLMFPGNAYGHLH-- 89
PP + ++ CV W +G +V +
Sbjct: 8 PPKPK-----DTLMISRTPEVTCVVVDVSHEDPEVKFNWYVDGVEVHNAKTKPREEQYNS 62
Query: 90 -VTQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVTSVEDTPPPIVQVGPSNQTL 148
L + + + C + A + + + P + + PS L
Sbjct: 63 TYRVVSVLTVLHQDWLNGKEYKCKVSNKALPAPIEKTISKAKGQPREPQVYTLPPSRDEL 122
Query: 149 PLHSVAFLPCQAVG-SPPP-HIRWYKNGN 175
+ V+ L C G P + W NG
Sbjct: 123 TKNQVS-LTCLVKGFYPSDIAVEWESNGQ 150
>3q5y_A TCR N15 beta; IG, T cell receptor, antigen peptide/MHC, membrane,
immune S; HET: EPE; 1.90A {Mus musculus} PDB: 1nfd_B*
3q5t_A
Length = 240
Score = 36.9 bits (85), Expect = 0.005
Identities = 18/91 (19%), Positives = 32/91 (35%), Gaps = 7/91 (7%)
Query: 95 TLRIQGVQKEDAGFFVC----SALSVAGSTTVRAFLQVTSVEDTPPPIVQV-GPSNQTLP 149
+ + ++ ED+ + C + + + PP V + PS +
Sbjct: 76 EMNMSALELEDSAMYFCASSLRWGDEQYFGPGTRLTVLEDLRNVTPPKVSLFEPSKAEIA 135
Query: 150 LHSVAFLPCQAVGSPPPHIR--WYKNGNSLP 178
A L C A G P H+ W+ NG +
Sbjct: 136 NKQKATLVCLARGFFPDHVELSWWVNGKEVH 166
>2c1o_A IGK-C protein; FAB fragment, enantioselective, finrozole, immune
system, antibody, ENA11His antibody, immunoglobulin
domain; 2.75A {Mus musculus}
Length = 254
Score = 36.7 bits (85), Expect = 0.005
Identities = 25/105 (23%), Positives = 40/105 (38%), Gaps = 13/105 (12%)
Query: 95 TLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVTSVE----DTPPPIVQVGPSNQTLPL 150
TL+I V+ ED G + C GS F T +E D P + PS++ L
Sbjct: 114 TLKISRVEAEDLGIYYCV----QGSHFPPTFGAGTKLELKRADAAPTVSIFPPSSEQLTS 169
Query: 151 HSVAFLPCQAVGSPPPH--IRWYKNGNSLPP--EDTRINVSSSGS 191
A + C P ++W +G+ ++ + S S
Sbjct: 170 GG-ASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSKDS 213
>1eaj_A Coxsackie virus and adenovirus receptor; virus/viral protein
receptor, immunoglobulin V domain fold, symmetric dimer;
1.35A {Homo sapiens} SCOP: b.1.1.1 PDB: 1f5w_A 2j12_B
2j1k_A 2wbw_B* 2w9l_A* 1rsf_A 1jew_R 1kac_B 1p69_B
1p6a_B
Length = 126
Score = 34.8 bits (80), Expect = 0.008
Identities = 11/32 (34%), Positives = 15/32 (46%), Gaps = 1/32 (3%)
Query: 2 ITEVKKSDEGKYQCYVQNMVGERETKPALLTV 33
+T ++ SD G YQC V+ K L V
Sbjct: 93 VTNLQLSDIGTYQCKVKKA-PGVANKKIHLVV 123
Score = 26.4 bits (58), Expect = 6.4
Identities = 7/34 (20%), Positives = 13/34 (38%)
Query: 95 TLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQV 128
++ + +Q D G + C G + L V
Sbjct: 90 SINVTNLQLSDIGTYQCKVKKAPGVANKKIHLVV 123
>3to4_D NKT vbeta2 (mouse variable domain, human constant; mouse CD1D,
mouse NKT, immune system; HET: AGH NAG; 3.10A {Homo
sapiens}
Length = 253
Score = 36.0 bits (83), Expect = 0.008
Identities = 23/93 (24%), Positives = 37/93 (39%), Gaps = 10/93 (10%)
Query: 95 TLRIQGVQKEDAGFFVCSALSVAGSTTVRAF------LQVTS-VEDTPPPIVQV-GPSNQ 146
LR+Q C++ + + T + + L V +++ PP V V PS
Sbjct: 75 ELRLQVANMSQGRTLYCTSSADHWTNTGQLYFGEGSKLTVLEDLKNVFPPEVAVFEPSEA 134
Query: 147 TLPLHSVAFLPCQAVGSPPPH--IRWYKNGNSL 177
+ A L C A G P H + W+ NG +
Sbjct: 135 EISHTQKATLVCLATGFYPDHVELSWWVNGKEV 167
>4acp_A IG gamma-1 chain C region; immune system, antibody, kifunensine;
HET: NAG; 2.49A {Homo sapiens} PDB: 2j6e_A*
Length = 240
Score = 36.1 bits (83), Expect = 0.009
Identities = 26/175 (14%), Positives = 47/175 (26%), Gaps = 14/175 (8%)
Query: 11 GKYQCYVQNMVGERETKPALLTVHAPPSFVVRP-QDQKVGLNGIASFQCVAEGS----PL 65
G C + + P F+ P + ++ CV P
Sbjct: 1 GTKSCDKTHTCPPCPAPE---LLGGPSVFLFPPKPKDTLMISRTPEVTCVVVDVSHEDPE 57
Query: 66 PSVFWTQEGSQVLMFPGNAYGHLH---VTQEGTLRIQGVQKEDAGFFVCSALSVAGSTTV 122
W +G +V + L + + + C + A +
Sbjct: 58 VKFNWYVDGVEVHNAKTKPREEQYNSTYRVVSVLTVLHQDWLNGKEYKCKVSNKALPAPI 117
Query: 123 RAFLQVTSVEDTPPPIVQVGPSNQTLPLHSVAFLPCQAVG-SPPP-HIRWYKNGN 175
+ + P + + PS L + V+ L C G P + W NG
Sbjct: 118 EKTISKAKGQPREPQVYTLPPSRDELTKNQVS-LTCLVKGFYPSDIAVEWESNGQ 171
>1hzh_H IGG, immunoglobulin heavy chain; antibody, immune system; HET: NAG
BMA MAN GAL FUC; 2.70A {Homo sapiens} SCOP: b.1.1.1
b.1.1.2 b.1.1.2 b.1.1.2 PDB: 2ig2_H 1mco_H*
Length = 457
Score = 36.4 bits (84), Expect = 0.010
Identities = 32/179 (17%), Positives = 52/179 (29%), Gaps = 19/179 (10%)
Query: 28 PALLTVHAPPSFVVRPQDQKVGLNGI-ASFQCVAEG-SPLP---SVFWTQEGSQVLMFPG 82
PA + P F+ P+ + + CV S W +G +V
Sbjct: 240 PAPELLGGPSVFLFPPKPKDTLMISRTPEVTCVVVDVSHEDPEVKFNWYVDGVEV----H 295
Query: 83 NAYGHLHVTQEGT-------LRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVTSVEDTP 135
NA Q + L + + + C + A + + +
Sbjct: 296 NAKTKPREEQYNSTYRVVSVLTVLHQDWLNGKEYKCKVSNKALPAPIEKTISKAKGQPRE 355
Query: 136 PPIVQVGPSNQTLPLHSVAFLPCQAVGSPPP--HIRWYKNGNSLPPEDTRINVSSSGSL 192
P + + PS L + V+ L C G P + W NG T V S
Sbjct: 356 PQVYTLPPSRDELTKNQVS-LTCLVKGFYPSDIAVEWESNGQPENNYKTTPPVLDSDGS 413
>2rgs_A I, IG gamma-2B heavy chain; FC-fragment, immunoglobulin,
glycosylation, immune system; HET: NAG FUC MAN GAL;
2.13A {Mus musculus}
Length = 218
Score = 34.9 bits (80), Expect = 0.015
Identities = 24/149 (16%), Positives = 44/149 (29%), Gaps = 15/149 (10%)
Query: 36 PPSFVVRPQDQKVGLNGIASFQCVAEGSPLP----SVFWTQEGSQVLMFPGNAYGHLH-- 89
PP+ + ++ CV + W +V + +
Sbjct: 16 PPNI-----KDVLMISLTPKVTCVVVDVSEDDPDVQISWFVNNVEVHTAQTQTHREDYNS 70
Query: 90 -VTQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVTSVEDTPPPIVQVGPSNQTL 148
+ TL IQ F C + + + + P + + P + L
Sbjct: 71 TIRVVSTLPIQHQDWMSGKEFKCKVNNKDLPSPIERTISKIKGLVRAPQVYILPPPAEQL 130
Query: 149 PLHSVAFLPCQAVG-SPPP-HIRWYKNGN 175
V+ L C VG +P + W NG+
Sbjct: 131 SRKDVS-LTCLVVGFNPGDISVEWTSNGH 158
>1lp9_E T-cell receptor alpha chain; immunoregulatory complex, class I
MHC:TCR CO-crystal, immune; 2.00A {Mus musculus} SCOP:
b.1.1.1 b.1.1.2 PDB: 2j8u_E 2jcc_E 2uwe_E 1nfd_A*
Length = 194
Score = 34.6 bits (79), Expect = 0.017
Identities = 26/176 (14%), Positives = 49/176 (27%), Gaps = 31/176 (17%)
Query: 36 PPSFVVRPQDQKVGLNGIASFQCVAEGSPLPSVFW-TQEGSQVLMF--------PGNAYG 86
V + V LN C + + P +FW Q ++ +
Sbjct: 7 TEGLVTLTEGLPVMLN------CTYQSTYSPFLFWYVQHLNEAPKLLLKSFTDNKRPEHQ 60
Query: 87 HLHVTQEGT-----LRIQGVQKEDAGFFVCSALSVAGSTTVRAF-----LQVTSVEDTPP 136
H T + L+ Q D+ + C+ + S + F L V P
Sbjct: 61 GFHATLHKSSSSFHLQKSSAQLSDSALYYCALFLASSSFSKLVFGQGTSLSVVPNIQNPE 120
Query: 137 PIVQVGPSNQTLPLHSVAFLPCQAVG-SPPPHIRWYKNGNSLPPEDTRINVSSSGS 191
P V + S C ++ + + T +++ + S
Sbjct: 121 PAVYQLKDPR-----SQDSTLCLFTDFDSQINVPKTMESGTFITDKTVLDMKAMDS 171
>1iga_A IGA1; immunoglobulin; NMR {Homo sapiens} PDB: 2esg_A 2qtj_A 3chn_A
1r70_B 3cm9_A
Length = 475
Score = 35.3 bits (81), Expect = 0.017
Identities = 32/161 (19%), Positives = 51/161 (31%), Gaps = 7/161 (4%)
Query: 26 TKPALLTVHAPPSFVVRPQDQKVGLNGIASFQCVAEG-SPLPSVFWT---QEGSQVLMFP 81
+ P + RP + + L A+ C G V +T G + P
Sbjct: 237 PPTPSPSCCHPRLSLHRPALEDLLLGSEANLTCTLTGLRDASGVTFTWTPSSGKSAVQGP 296
Query: 82 GNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVTSVEDTPPPIVQV 141
+ L F C+A T + A L + P + +
Sbjct: 297 PERDLCGCYSVSSVLPGCAEPWNHGKTFTCTAAYPESKTPLTATLSKSG-NTFRPEVHLL 355
Query: 142 GPSNQTLPLHSVAFLPCQAVGSPPP--HIRWYKNGNSLPPE 180
P ++ L L+ + L C A G P +RW + LP E
Sbjct: 356 PPPSEELALNELVTLTCLARGFSPKDVLVRWLQGSQELPRE 396
>1xiw_A T-cell surface glycoprotein CD3 epsilon chain; CD3-epsilon,
CD3-delta, UCHT1-SCFV, immunoglobulin fold,
antibody-antigen complex; 1.90A {Homo sapiens} SCOP:
b.1.1.4
Length = 105
Score = 33.6 bits (76), Expect = 0.017
Identities = 10/56 (17%), Positives = 18/56 (32%), Gaps = 4/56 (7%)
Query: 198 RDDFRAEPKDTRVASGETALLECGPPKGQPEPTLHWKKNGQFIDLESSKRVSILGD 253
P + SG T +L C P + W+ N + I + + +
Sbjct: 7 MGGITQTPYKVSI-SGTTVILTC---PQYPGSEILWQHNDKNIGGDEDDKNIGSDE 58
Score = 32.1 bits (72), Expect = 0.060
Identities = 9/46 (19%), Positives = 15/46 (32%), Gaps = 3/46 (6%)
Query: 155 FLPCQAVGSPPPHIRWYKNGNSLPPE-DTRINVSSSGSLQIDVLRD 199
L C P I W N ++ + D + S L + +
Sbjct: 25 ILTCPQ--YPGSEILWQHNDKNIGGDEDDKNIGSDEDHLSLKEFSE 68
>3udw_C Poliovirus receptor; PVR tigit IGSF signal transduction immunology,
IGSF, cell SU receptor signalling, glycosylation,
membrane protein; HET: NAG; 2.90A {Homo sapiens}
Length = 118
Score = 33.7 bits (77), Expect = 0.020
Identities = 9/36 (25%), Positives = 13/36 (36%)
Query: 2 ITEVKKSDEGKYQCYVQNMVGERETKPALLTVHAPP 37
+ ++ DEG Y C + L V A P
Sbjct: 83 MFGLRVEDEGNYTCLFVTFPQGSRSVDIWLRVLAKP 118
Score = 29.8 bits (67), Expect = 0.35
Identities = 19/111 (17%), Positives = 35/111 (31%), Gaps = 22/111 (19%)
Query: 40 VVRPQDQKVGLNGIASFQCVAEGSPLPS-----VFWTQEGSQVLMFPGNAYGHLHVTQEG 94
V P L + C + + + W + G M + ++
Sbjct: 4 VQAPTQVPGFLGDSVTLPCYLQVPNMEVTHVSQLTWARHGESGSMAVFHQTQGPSYSESK 63
Query: 95 ----------------TLRIQGVQKEDAGFFVCS-ALSVAGSTTVRAFLQV 128
+LR+ G++ ED G + C GS +V +L+V
Sbjct: 64 RLEFVAARLGAELRNASLRMFGLRVEDEGNYTCLFVTFPQGSRSVDIWLRV 114
>1neu_A Myelin P0 protein; structural protein, glycoprotein, transmembrane,
phosphorylation, immunoglobulin fold, signal; 1.90A
{Rattus norvegicus} SCOP: b.1.1.1
Length = 124
Score = 33.4 bits (76), Expect = 0.027
Identities = 9/39 (23%), Positives = 17/39 (43%), Gaps = 2/39 (5%)
Query: 2 ITEVKKSDEGKYQCYVQNM--VGERETKPALLTVHAPPS 38
I + SD G + C V+N + + ++ L P+
Sbjct: 85 IHNLDYSDNGTFTCDVKNPPDIVGKTSQVTLYVFEKVPT 123
Score = 26.5 bits (58), Expect = 5.5
Identities = 12/71 (16%), Positives = 20/71 (28%), Gaps = 21/71 (29%)
Query: 205 PKDTRVASGETALLEC-------------------GPPKGQPEPTLHWKKNGQFIDLESS 245
++ A G L C H+ K +ID +
Sbjct: 6 DREVYGAVGSQVTLHCSFWSSEWVSDDISFTWRYQPEGGRDAISIFHYAKGQPYIDEVGT 65
Query: 246 --KRVSILGDP 254
+R+ +GDP
Sbjct: 66 FKERIQWVGDP 76
>3c5j_A HLA class II histocompatibility antigen, DR alpha; HLA, MHC class
II, glycoprotein, immune response, membrane,
transmembrane, GTP-binding, methylation; HET: NAG; 1.80A
{Homo sapiens} PDB: 1d5x_A* 1d5z_A* 1d6e_A* 1d5m_A
1fyt_A* 1hqr_A 1j8h_A* 1r5i_A 1seb_A 1zgl_A 2seb_A*
1fv1_A* 2ipk_A* 3pdo_A 3pgc_A 3pgd_A 1ymm_A* 1aqd_A
2g9h_A* 1h15_A ...
Length = 181
Score = 33.9 bits (78), Expect = 0.030
Identities = 14/60 (23%), Positives = 22/60 (36%), Gaps = 9/60 (15%)
Query: 123 RAFLQVTSVE------DTPPPIVQVGPSNQTLPLHSVAFLPCQAVGSPPPHI--RWYKNG 174
+A L++ + PP V V + + L L C PP + W +NG
Sbjct: 67 KANLEIMTKRSNYTPITNVPPEVTVLTN-SPVELREPNVLICFIDKFTPPVVNVTWLRNG 125
>1igy_B IGG1 intact antibody MAB61.1.3; intact immunoglobulin, V region, C
region, hinge region, immunoglobulin; HET: NAG FUL NDG
BMA MAN GAL FUC; 3.20A {Mus musculus} SCOP: b.1.1.1
b.1.1.2 b.1.1.2 b.1.1.2
Length = 434
Score = 34.5 bits (79), Expect = 0.039
Identities = 23/177 (12%), Positives = 46/177 (25%), Gaps = 13/177 (7%)
Query: 26 TKPALLTVHAPPSFVVRPQDQKVGLNGIASFQCVAEG----SPLPSVFWTQEG----SQV 77
+ V + F +P+D + + CV P W + +
Sbjct: 221 CICTVPEVSSVFIFPPKPKD-TLLITVTPKVTCVVVDISKDDPEVQFSWFVDNVEVHTAQ 279
Query: 78 LMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVTSVEDTPPP 137
+ L I + F C S A + + T + P
Sbjct: 280 TQPREEQFNSTF-RVVSALPIMHQDWLNGKEFKCRVNSAAFPAPIEKTISKTKGKPRAPQ 338
Query: 138 IVQVGPSNQTLPLHSVAFLPCQAVGSPPP--HIRWYKNGNSLPPEDTRINVSSSGSL 192
+ + P + + V+ L C P + W +G + + +
Sbjct: 339 VYTIPPPKEQMAKDKVS-LTCMITDFFPEDITVEWQSDGQAPENYKNTQPIMDTDGS 394
>3tv3_L PGT128 light chain, IG lambda-2 chain C regions; FAB, HIV-1
neutralizing antibody, GP120, immune system; HET: PCA
MAN GOL EPE; 1.29A {Homo sapiens} PDB: 3tyg_L* 3twc_L*
2mcg_1 1mcw_M 1a8j_L 3mcg_1 1dcl_A 1mcb_A* 1mcc_A*
1mcd_A* 1mce_A* 1mcf_A* 1mch_A 1mci_A* 1mcj_A* 1mck_A
1mcl_A* 1mcn_A* 1mcq_A 1mcr_A ...
Length = 211
Score = 33.6 bits (77), Expect = 0.040
Identities = 18/88 (20%), Positives = 32/88 (36%), Gaps = 9/88 (10%)
Query: 95 TLRIQGVQKEDAGFFVCSALSVAGSTTVRAF----LQVTSVEDTPPPIVQVGPSNQTLPL 150
+L + G+Q +D + C S+ G+ V L V P + PS++ L
Sbjct: 69 SLTVSGLQTDDEAVYYCG--SLVGNWDVIFGGGTKLTVLGQPKAAPSVTLFPPSSEELQA 126
Query: 151 HSVAFLPCQAVGSPP--PHIRWYKNGNS 176
+ L C P + W + +
Sbjct: 127 NKAT-LVCLISDFYPGAVTVAWKADSSP 153
>3d85_D IL-12B, interleukin-12 subunit P40, cytotoxic lymphocyte; FAB,
immune system/cytokine complex; 1.90A {Homo sapiens}
SCOP: b.1.1.4 b.1.2.1 b.1.2.1 PDB: 3d87_B* 3duh_A*
1f42_A* 1f45_A* 3hmx_A* 3qwr_A*
Length = 306
Score = 33.9 bits (76), Expect = 0.047
Identities = 12/50 (24%), Positives = 18/50 (36%), Gaps = 3/50 (6%)
Query: 201 FRAEPKDTRVASGETALLECGPPKGQPEPTLHWKKNGQFIDLESSKRVSI 250
+ E A GE +L C E + W + L S K ++I
Sbjct: 9 YVVELDWYPDAPGEMVVLTCD---TPEEDGITWTLDQSSEVLGSGKTLTI 55
Score = 29.7 bits (65), Expect = 1.0
Identities = 6/48 (12%), Positives = 11/48 (22%), Gaps = 2/48 (4%)
Query: 136 PPIVQVGPSNQTLPLHSVAFLPCQAVGSPPPHIRWYKNGNSLPPEDTR 183
+ V + L C I W + +S +
Sbjct: 6 KDVYVVELDWYPDAPGEMVVLTCD--TPEEDGITWTLDQSSEVLGSGK 51
>3dmm_C T-cell surface glycoprotein CD8 alpha chain; T cell CO-receptor
CD8AB MHC complex, immune response, membrane, MHC I,
phosphoprotein, transmembrane; 2.60A {Mus musculus}
Length = 166
Score = 33.1 bits (75), Expect = 0.051
Identities = 20/76 (26%), Positives = 27/76 (35%), Gaps = 10/76 (13%)
Query: 95 TLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVTSVE----DTPPPIVQVGPSNQTLPL 150
L + KE+ G++ CS + S +V F V V T V PS
Sbjct: 91 VLTLNKFSKENEGYYFCSVI----SNSVMYFSSVVPVLQKVNSTTTKPVLRTPSPVHPTG 146
Query: 151 HSVAFLP--CQAVGSP 164
S P C+ GS
Sbjct: 147 TSQPQRPEDCRPRGSV 162
>3s96_B 3B5H10 FAB light chain; huntingtin, immune system; 1.90A {Mus
musculus} PDB: 2qhr_L 3ffd_B 4dcq_A
Length = 218
Score = 33.4 bits (77), Expect = 0.055
Identities = 20/90 (22%), Positives = 31/90 (34%), Gaps = 8/90 (8%)
Query: 95 TLRIQGVQKEDAGFFVCSALSVAGSTTVRAF-----LQVTSVEDTPPPIVQVGPSNQTLP 149
L I +Q ED ++C V F + V + P + PS++ L
Sbjct: 76 YLSISNIQPEDEAIYICGVGDTIKEQFVYVFGGGTKVTVLGQPKSTPTLTVFPPSSEELK 135
Query: 150 LHSVAFLPCQAVGSPPPHIR--WYKNGNSL 177
+ A L C P + W NG +
Sbjct: 136 -ENKATLVCLISNFSPSGVTVAWKANGTPI 164
>2wbj_D OB TCR; transmembrane, immune response, T cell receptor, MHC II,
MEM receptor, molecular mimicry, multiple sclerosis,
immune SYS autoimmunity; HET: NAG BMA MAN; 3.00A {Homo
sapiens}
Length = 279
Score = 33.3 bits (76), Expect = 0.069
Identities = 28/93 (30%), Positives = 39/93 (41%), Gaps = 10/93 (10%)
Query: 95 TLRIQGVQKEDAGFFVCSALSVAGSTTVRAF------LQVTSV-EDTPPPIVQV-GPSNQ 146
TL + ED+ F++CSA + F L VT ++ PP V V PS
Sbjct: 101 TLTVTSAHPEDSSFYICSARDLTSGANNEQFFGPGTRLTVTEDLKNVFPPEVAVFEPSEA 160
Query: 147 TLPLHSVAFLPCQAVGSPPPHIR--WYKNGNSL 177
+ A L C A G P H+ W+ NG +
Sbjct: 161 EISHTQKATLVCLATGFYPDHVELSWWVNGKEV 193
>1oga_E TRBC1, T-cell receptor beta chain C region; immune system/receptor,
immune system/receptor/complex, TCR, MHC,
immunodominance, FLU, complex; 1.40A {Homo sapiens}
SCOP: b.1.1.1 b.1.1.2 PDB: 2vlm_E 2vlk_E 2vlj_E 2vlr_E
2xna_B 2xn9_B 2axh_A 2axj_A 3scm_D* 3sda_D* 3sdc_D*
3sdd_D* 3qi9_D* 3mff_B* 2ak4_E 3he7_D* 2eyr_B 3pqy_E
3kxf_E 2cde_B ...
Length = 252
Score = 33.1 bits (75), Expect = 0.076
Identities = 25/97 (25%), Positives = 39/97 (40%), Gaps = 11/97 (11%)
Query: 91 TQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVTSVE------DTPPPIVQV-GP 143
+ L + QK F++C+ S + S+ + F T + + PP V V P
Sbjct: 73 KESFPLTVTSAQKNPTAFYLCA--SSSRSSYEQYFGPGTRLTVTEDLKNVFPPEVAVFEP 130
Query: 144 SNQTLPLHSVAFLPCQAVGSPPPHIR--WYKNGNSLP 178
S + A L C A G P H+ W+ NG +
Sbjct: 131 SEAEISHTQKATLVCLATGFYPDHVELSWWVNGKEVH 167
>4dzb_B Vbeta2 (MAIT T cell receptor); immune system; 1.70A {Homo sapiens}
PDB: 1ymm_E* 3o4l_E* 3o6f_D 3t0e_D 1ktk_E 3mfg_B 2ij0_E
Length = 246
Score = 32.9 bits (75), Expect = 0.080
Identities = 23/91 (25%), Positives = 34/91 (37%), Gaps = 8/91 (8%)
Query: 95 TLRIQGVQKEDAGFFVCSALSVAGSTTV------RAFLQVTSVEDTPPPIVQVGPSNQTL 148
TL + ED+ F++CSA + R + PP + PS +
Sbjct: 78 TLTVTSAHPEDSSFYICSARTSGDFGEQFFGPGTRLTVLEDLKNVFPPEVAVFEPSEAEI 137
Query: 149 PLHSVAFLPCQAVGSPPPHIR--WYKNGNSL 177
A L C A G P H+ W+ NG +
Sbjct: 138 SHTQKATLVCLATGFYPDHVELSWWVNGKEV 168
>1ncn_A T lymphocyte activation antigen CD86; IG V, beta strands, immune
system; 2.70A {Homo sapiens} SCOP: b.1.1.1 PDB: 1i85_A
Length = 110
Score = 31.7 bits (72), Expect = 0.084
Identities = 5/18 (27%), Positives = 11/18 (61%)
Query: 2 ITEVKKSDEGKYQCYVQN 19
+ ++ D+G YQC + +
Sbjct: 73 LHNLQIKDKGLYQCIIHH 90
Score = 28.3 bits (63), Expect = 1.3
Identities = 7/17 (41%), Positives = 11/17 (64%)
Query: 95 TLRIQGVQKEDAGFFVC 111
TLR+ +Q +D G + C
Sbjct: 70 TLRLHNLQIKDKGLYQC 86
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 33.3 bits (75), Expect = 0.092
Identities = 34/216 (15%), Positives = 60/216 (27%), Gaps = 63/216 (29%)
Query: 120 TTVRAFLQVTSVEDTPPPIVQV----GPSNQTLPLHSVAFLPCQAVGSPPPHIRWYKNGN 175
+R L E P V + G + L Q I W N
Sbjct: 138 LKLRQALL----ELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCK--MDFKIFWLNLKN 191
Query: 176 SLPPED-----------------TRINVSSSGSLQIDVLRDDFR---AEPKDTR------ 209
PE +R + SS+ L+I ++ + R
Sbjct: 192 CNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLL 251
Query: 210 -VASGET--AL-LECGPPKGQPEPTL---HWKKNGQFIDLESSKRVSILGDPW-FDSRRS 261
V + + A L C L +K+ F+ ++ +S+
Sbjct: 252 NVQNAKAWNAFNLSC--------KILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEV 303
Query: 262 RSIFGSVLGALSDD-----------QWKLIAKNIRN 286
+S+ L D + +IA++IR+
Sbjct: 304 KSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRD 339
>2bnu_A TCR alpha chain, T-cell receptor alpha chain C region; superagonist
peptide T-cell vaccines, transmembrane, immunoglobulin
domain; 1.40A {Homo sapiens} PDB: 2bnq_D 2bnr_D 2f54_D
2pyf_A* 2pye_D* 2f53_D 2p5e_D* 2p5w_D* 3mv7_D 3mv8_D
3mv9_D 3utt_D 2cdg_A
Length = 203
Score = 32.7 bits (74), Expect = 0.100
Identities = 24/127 (18%), Positives = 44/127 (34%), Gaps = 21/127 (16%)
Query: 32 TVHAPPSFVVRPQDQKVGLNGIASFQCVAEGSPLPSVFW-TQEGSQVLMFPGNAYGHLHV 90
V P+ + P+ + + LN C S + ++ W Q+ + L
Sbjct: 2 EVTQIPAALSVPEGENLVLN------CSFTDSAIYNLQWFRQDPGKGLTSLLLIQSSQRE 55
Query: 91 TQEG-------------TLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVTSVEDTPPP 137
G TL I Q D+ ++C+ +G + + F + TS+ P
Sbjct: 56 QTSGRLNASLDKSSGRSTLYIAASQPGDSATYLCAVRPTSGGSYIPTFGRGTSLIVH-PY 114
Query: 138 IVQVGPS 144
I P+
Sbjct: 115 IQNPDPA 121
>3bkj_L WO2 IGG2A FAB fragment light chain kappa; abeta, FAB, WO2,
alzheimer'S disease, immunotherapies, APP, immune
system; 1.59A {Mus musculus} PDB: 3bkc_L 3bkm_L 2zuq_B*
1h3p_L
Length = 252
Score = 32.7 bits (75), Expect = 0.10
Identities = 25/105 (23%), Positives = 39/105 (37%), Gaps = 13/105 (12%)
Query: 95 TLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVTSVE----DTPPPIVQVGPSNQTLPL 150
TLRI V+ ED G + C S F T +E D P + PS++ L
Sbjct: 110 TLRISRVEAEDLGVYYCF----QASLVPLTFGAGTKLELKRADAAPTVSIFPPSSEQLTS 165
Query: 151 HSVAFLPCQAVGSPPPH--IRWYKNGNSLPP--EDTRINVSSSGS 191
A + C P ++W +G+ ++ + S S
Sbjct: 166 GG-ASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSKDS 209
>2c9a_A Receptor-type tyrosine-protein phosphatase MU; glycoprotein,
hydrolase, immunoglobulin domain; HET: NAG MAN NDG FUL;
2.7A {Homo sapiens} SCOP: b.1.1.4 b.29.1.25
Length = 259
Score = 32.2 bits (72), Expect = 0.15
Identities = 20/87 (22%), Positives = 30/87 (34%), Gaps = 2/87 (2%)
Query: 34 HAPPSFVVRPQDQKVGLNGIASFQCVAEGSPLPSVFWTQEGSQVLMFPGNAYGHL-HVTQ 92
P F+ R Q+ +V A+FQC A G + +G V P
Sbjct: 163 TRTPHFL-RIQNVEVNAGQFATFQCSAIGRTVAGDRLWLQGIDVRDAPLKEIKVTSSRRF 221
Query: 93 EGTLRIQGVQKEDAGFFVCSALSVAGS 119
+ + K DAG + C + G
Sbjct: 222 IASFNVVNTTKRDAGKYRCMIRTEGGV 248
>3r0n_A Poliovirus receptor-related protein 2; IG-domain, cell-adhesion
molecule, virus entry receptor, STR genomics,
PSI-biology; 1.30A {Homo sapiens}
Length = 128
Score = 31.1 bits (70), Expect = 0.18
Identities = 7/32 (21%), Positives = 9/32 (28%)
Query: 2 ITEVKKSDEGKYQCYVQNMVGERETKPALLTV 33
+ + DEG Y C L V
Sbjct: 97 LHGLTVEDEGNYTCEFATFPKGSVRGMTWLRV 128
Score = 30.7 bits (69), Expect = 0.22
Identities = 19/68 (27%), Positives = 27/68 (39%), Gaps = 5/68 (7%)
Query: 66 PSVFWTQEGSQVLMFPGNAYGHLHVTQEG----TLRIQGVQKEDAGFFVCS-ALSVAGST 120
PS + GS+ L F T+ TL + G+ ED G + C A GS
Sbjct: 61 PSFPSPKPGSERLSFVSAKQSTGQDTEAELQDATLALHGLTVEDEGNYTCEFATFPKGSV 120
Query: 121 TVRAFLQV 128
+L+V
Sbjct: 121 RGMTWLRV 128
>2or8_A Hepatitis A virus cellular receptor 1 homolog; beta barrel,
immunoglobulin fold, IGV domain, TIM, immune system;
2.50A {Mus musculus}
Length = 116
Score = 29.9 bits (67), Expect = 0.33
Identities = 11/41 (26%), Positives = 16/41 (39%), Gaps = 1/41 (2%)
Query: 2 ITEVKKSDEGKYQCYVQNMVGERETKPALLTVHAPPSFVVR 42
I +SD G Y C V+ G + ++ P V R
Sbjct: 77 IENSVESDSGLYCCRVEI-PGWFNDQKVTFSLQVKPELVPR 116
>1zxq_A ICAM-2, intercellular adhesion molecule-2; immunoglobulin fold,
cell adhesion, glycoprotein, transmembr; HET: NAG; 2.20A
{Homo sapiens} SCOP: b.1.1.3 b.1.1.4
Length = 192
Score = 30.9 bits (69), Expect = 0.36
Identities = 20/137 (14%), Positives = 39/137 (28%), Gaps = 26/137 (18%)
Query: 139 VQVGPSNQTLPLHSVAFLPCQAVGSPPPHI--RWYKNGNSLPPEDTRINVSSSG------ 190
V V P + + C + P N L + + S
Sbjct: 5 VHVRPKKLAVEPKGSLEVNCSTTCNQPEVGGLETSLNKILLDEQAQWKHYLVSNISHDTV 64
Query: 191 --------------SLQIDVLR--DDFRAEPKDTRVASGETALLECGPPKGQPEP--TLH 232
+ + V + + T VA G++ +EC P +P TL
Sbjct: 65 LQCHFTCSGKQESMNSNVSVYQPPRQVILTLQPTLVAVGKSFTIECRVPTVEPLDSLTLF 124
Query: 233 WKKNGQFIDLESSKRVS 249
+ + + E+ + +
Sbjct: 125 LFRGNETLHYETFGKAA 141
>1b6u_A KIR2DL3, P58 killer cell inhibitory receptor; natural killer cell,
HLA, major histocompatibility complex class I (MHC class
I); 3.00A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4
Length = 257
Score = 31.1 bits (70), Expect = 0.39
Identities = 27/193 (13%), Positives = 47/193 (24%), Gaps = 21/193 (10%)
Query: 2 ITEVKKSDEGKYQCYVQNMVGERET----KPALLTV---HAPPSFVVRPQDQKVGLNGIA 54
I + + G Y+CY + P + + + PS +P V
Sbjct: 66 IGPMMQDLAGTYRCYGSVTHSPYQLSAPSDPLDIVITGLYEKPSLSAQP-GPTVLAGESV 124
Query: 55 SFQCVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLHVTQEGTLRIQGVQKEDAGFFVCSA- 113
+ C + S ++EG Q G + C
Sbjct: 125 TLSCSSR-SSYDMYHLSREGEAHERRFSAGPKVNGTFQ---ADFPLGPATHGGTYRCFGS 180
Query: 114 ------LSVAGSTTVRAFLQVTSVEDTPPPIVQVGPSNQTLPLHSVAFLPCQAVGSPPPH 167
S + + VT P S P H A + + +
Sbjct: 181 FRDSPYEWSNSSDPLL--VSVTGNPSNSWPSPTEPSSETGNPRHLHAAAEQKLISEEDLN 238
Query: 168 IRWYKNGNSLPPE 180
+ G+S
Sbjct: 239 LDLVPRGSSSHHH 251
>3mj8_L Stimulatory hamster antibody HL4E10 FAB light CHA; hamster IGG,
immune system; 2.94A {Cricetulus migratorius} PDB:
3mj9_L*
Length = 213
Score = 30.4 bits (69), Expect = 0.44
Identities = 26/105 (24%), Positives = 32/105 (30%), Gaps = 12/105 (11%)
Query: 95 TLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVTSVEDTPPPIVQVGPSNQTLPLHSV- 153
TL I Q D + C S G+ + F T V P PS P S
Sbjct: 71 TLTISKAQAGDEADYYCQ--SWDGTNSAWVFGSGTKVTVLGQP--NAAPSVTLFPPSSEE 126
Query: 154 -----AFLPCQAVGSPP--PHIRWYKNGNSLPPEDTRINVSSSGS 191
A L C G P + W +G + S S S
Sbjct: 127 LKTNQATLVCMINGFYPADVAVTWEADGTPITQGVKTTQPSKSDS 171
>3o3u_N Maltose-binding periplasmic protein, advanced Gly END
product-specific receptor; RAGE, AGER, scavenger
receptor; HET: MLR; 1.50A {Escherichia coli} PDB: 3cjj_A
2l7u_A* 2e5e_A
Length = 581
Score = 31.1 bits (70), Expect = 0.47
Identities = 26/100 (26%), Positives = 40/100 (40%), Gaps = 7/100 (7%)
Query: 90 VTQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVTSVEDTP--PPIVQVGPSNQT 147
V G+L + V +D G F C A++ G T + V P P IV
Sbjct: 428 VLPNGSLFLPAVGIQDEGIFRCQAMNRNGKETKSNY--RVRVYQIPGKPEIVDSASELTA 485
Query: 148 LPLHSVAFLPCQAVGS-PPPHIRWYKNGNSLPPEDTRINV 186
+ V C + GS P + W+ +G L P + ++V
Sbjct: 486 GVPNKVG--TCVSEGSYPAGTLSWHLDGKPLVPNEKGVSV 523
Score = 29.1 bits (65), Expect = 2.1
Identities = 19/76 (25%), Positives = 34/76 (44%), Gaps = 7/76 (9%)
Query: 8 SDEGKYQCYVQNMVGERETKPALLTVHAPPS---FVVRPQDQKVGL-NGIASFQCVAEGS 63
DEG ++C N G+ + V+ P V + G+ N + + CV+EGS
Sbjct: 442 QDEGIFRCQAMNRNGKETKSNYRVRVYQIPGKPEIVDSASELTAGVPNKVGT--CVSEGS 499
Query: 64 -PLPSVFWTQEGSQVL 78
P ++ W +G ++
Sbjct: 500 YPAGTLSWHLDGKPLV 515
>4ei6_A Valpha1 XV19 type II natural killer T cell recept variable domain,
human constant...; natural killer T cell receptor,
immune system; 1.60A {Mus musculus} PDB: 4ei5_C 4elk_A
4elm_E* 3qeu_A 1ao7_D 3qdj_D 3qdg_D 3qfj_D 1qsf_D
1qse_D* 3d39_D* 3d3v_D* 3h9s_D 3pwp_D 2gj6_D 3utp_D*
3uts_D 1qrn_D 3hg1_D 3rdt_A ...
Length = 208
Score = 30.4 bits (68), Expect = 0.48
Identities = 25/132 (18%), Positives = 42/132 (31%), Gaps = 25/132 (18%)
Query: 32 TVHAPPSFVVRPQDQKVGLNGIASFQCVAEGSPLPSVFWTQ----EGSQVLMF------- 80
V P + P+ LN C + +W + EG + LM
Sbjct: 4 KVQQSPESLSVPEGGMASLN------CTSSDRNFQYFWWYRQHSGEGPKALMSIFSDGDK 57
Query: 81 -PGNAYGHLHVTQ-EGTLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVTS------VE 132
G HL+ +L I+ Q D+ + C+A F T ++
Sbjct: 58 KEGRFTAHLNKASLHVSLHIRDSQPSDSALYFCAASEQNNYAQGLTFGLGTRVSVFPYIQ 117
Query: 133 DTPPPIVQVGPS 144
+ P + Q+ S
Sbjct: 118 NPDPAVYQLRDS 129
>2oyp_A Hepatitis A virus cellular receptor 2; TIM-3, T-cell
immunoglobulin mucin, signaling protein; 1.95A {Mus
musculus} PDB: 3kaa_A*
Length = 109
Score = 29.5 bits (66), Expect = 0.50
Identities = 7/18 (38%), Positives = 8/18 (44%)
Query: 2 ITEVKKSDEGKYQCYVQN 19
I V D G Y C +Q
Sbjct: 76 IKNVTLDDHGTYCCRIQF 93
Score = 25.7 bits (56), Expect = 9.6
Identities = 12/63 (19%), Positives = 20/63 (31%), Gaps = 17/63 (26%)
Query: 209 RVASGETALLEC--GPPKGQPEPTLHWKK---------------NGQFIDLESSKRVSIL 251
+V G+ A L C P + W K + + + + S R +
Sbjct: 5 KVEVGKNAYLPCSYTLPTSGTLVPMCWGKGFCPWSQCTNELLRTDERNVTYQKSSRYQLK 64
Query: 252 GDP 254
GD
Sbjct: 65 GDL 67
>3e0g_A Leukemia inhibitory factor receptor; IG domain, cytokine binding
homology region (CHR), cell MEMB disease mutation,
glycoprotein, membrane; HET: NAG MAN FUC; 3.10A {Homo
sapiens}
Length = 483
Score = 31.0 bits (69), Expect = 0.52
Identities = 19/170 (11%), Positives = 48/170 (28%), Gaps = 16/170 (9%)
Query: 32 TVHAPPSFVVR--PQDQKVGLNGIASFQCVAEGSPLPSVFWTQEGSQVLMFPGNAYGHLH 89
+ P + PQD+ + + +F CV++ L ++ + + N
Sbjct: 192 QISWIPDSQTKVFPQDKVILVGSDITFCCVSQEKVLSALIGHTNCPLIHLDGENV----- 246
Query: 90 VTQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVTSVEDTPPPIVQVGPSNQTLP 149
++I+ + + + + + DTP + + +
Sbjct: 247 -----AIKIRNISVSASS--GTNVVFTTEDNIFGTVIFAGYPPDTPQQLNCETHDLKEII 299
Query: 150 LHSVAFLPCQAVGSPPPH--IRWYKNGNSLPPEDTRINVSSSGSLQIDVL 197
VG + +G + + + S L +L
Sbjct: 300 CSWNPGRVTALVGPRATSYTLVESFSGKYVRLKRAEAPTNESYQLLFQML 349
Score = 30.6 bits (68), Expect = 0.70
Identities = 7/64 (10%), Positives = 20/64 (31%)
Query: 127 QVTSVEDTPPPIVQVGPSNQTLPLHSVAFLPCQAVGSPPPHIRWYKNGNSLPPEDTRINV 186
V + P +V P ++ + + S C + + + N + + + +
Sbjct: 189 PVKQISWIPDSQTKVFPQDKVILVGSDITFCCVSQEKVLSALIGHTNCPLIHLDGENVAI 248
Query: 187 SSSG 190
Sbjct: 249 KIRN 252
>1i1r_A GP130, interleukin-6 receptor beta chain; cytokine/receptor
complex, GP130; 2.40A {Homo sapiens} SCOP: b.1.2.1
b.1.2.1 b.1.2.1 PDB: 1p9m_A
Length = 303
Score = 30.6 bits (68), Expect = 0.57
Identities = 14/76 (18%), Positives = 24/76 (31%), Gaps = 2/76 (2%)
Query: 125 FLQVTSVEDTPPPIVQVGPSNQTLPLHSVAFLPCQAVGSPPPHIRWYKNGNSLPPEDTRI 184
L P+VQ+ SN T + +I W N ++P E I
Sbjct: 2 LLDPCGYISPESPVVQLH-SNFTAVC-VLKEKCMDYFHVNANYIVWKTNHFTIPKEQYTI 59
Query: 185 NVSSSGSLQIDVLRDD 200
++ S+ +
Sbjct: 60 INRTASSVTFTDIASL 75
Score = 29.0 bits (64), Expect = 1.8
Identities = 8/52 (15%), Positives = 12/52 (23%), Gaps = 6/52 (11%)
Query: 204 EPKDTRVASGETALLEC------GPPKGQPEPTLHWKKNGQFIDLESSKRVS 249
P+ V C + WK N I E ++
Sbjct: 10 SPESPVVQLHSNFTAVCVLKEKCMDYFHVNANYIVWKTNHFTIPKEQYTIIN 61
>2ptt_A CD48 antigen; CD244, CD48, NK cell receptor, X-RAY, immune system;
1.63A {Mus musculus} PDB: 2ptv_A
Length = 110
Score = 29.0 bits (65), Expect = 0.60
Identities = 10/35 (28%), Positives = 13/35 (37%), Gaps = 2/35 (5%)
Query: 2 ITEVKKSDEGKYQCYVQNMVGERETKPALLTVHAP 36
I+ V+K D+G Y V L V P
Sbjct: 77 ISNVRKEDKGTYYMRVLR--ETENELKITLEVFDP 109
Score = 26.4 bits (58), Expect = 5.7
Identities = 8/21 (38%), Positives = 10/21 (47%)
Query: 91 TQEGTLRIQGVQKEDAGFFVC 111
G L I V+KED G +
Sbjct: 70 ENNGALHISNVRKEDKGTYYM 90
>3bik_B Programmed cell death protein 1; CO-stimulation, receptor-ligand
complex, immunoglobulin-like sandwich, T cell, B cell,
programmed death; 2.65A {Mus musculus} SCOP: b.1.1.1
Length = 134
Score = 29.4 bits (66), Expect = 0.68
Identities = 10/46 (21%), Positives = 19/46 (41%), Gaps = 4/46 (8%)
Query: 95 TLRIQGVQKEDAGFFVCSALSVAGSTTV----RAFLQVTSVEDTPP 136
+ I ++ D+G ++C A+S+ + A L VT
Sbjct: 84 HMNILDTRRNDSGIYLCGAISLHPKAKIEESPGAELVVTERILETS 129
>2eys_A NKT15; natural killer T cell receptor, immune system; 2.21A {Homo
sapiens} PDB: 2eyr_A 2eyt_A 3huj_E* 3tyf_A 3tzv_A*
3sdx_E* 2po6_C* 2cde_A 3to4_C*
Length = 210
Score = 30.0 bits (67), Expect = 0.71
Identities = 23/172 (13%), Positives = 49/172 (28%), Gaps = 23/172 (13%)
Query: 36 PPSFVVRPQDQKVGLNGIASFQCVAEGSPLPSVFW-TQEGSQVLMFPGNAYGHLHVTQEG 94
P ++ + + L C SP ++ W Q+ + + + G
Sbjct: 9 SPQSLIILEGKNCTLQ------CNYTVSPFSNLRWYKQDTGRGPVSLTIMTFSENTKSNG 62
Query: 95 -------------TLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVTSVEDTPPPIVQV 141
+L I Q D+ ++C + F + T + P I
Sbjct: 63 RYTATLDADTKQSSLHITASQLSDSASYICVVSDRGSTLGRLYFGRGTQL-TVWPDIQNP 121
Query: 142 GPSNQTLPL-HSVAFLPCQAVG-SPPPHIRWYKNGNSLPPEDTRINVSSSGS 191
P+ L S C ++ K+ + + +++ S
Sbjct: 122 DPAVYQLRDSKSSDKSVCLFTDFDSQTNVSQSKDSDVYITDKCVLDMRSMDF 173
>1kgc_D T-cell receptor alpha chain; LC13 clone, immune system; 1.50A {Homo
sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 1mi5_D 3kpr_D 3kps_D
3o6f_C 3t0e_C 3pqy_D 2esv_D 3dxa_D 3dx9_A
Length = 206
Score = 29.9 bits (67), Expect = 0.74
Identities = 18/105 (17%), Positives = 31/105 (29%), Gaps = 12/105 (11%)
Query: 95 TLRIQGVQKEDAGFFVC-SALSVAGSTTVRAF-----LQVTSVEDTPPPIVQVGPSNQTL 148
TL + DA + C L+ S F L V P P V ++
Sbjct: 71 TLILHRATLRDAAVYYCILPLAGGTSYGKLTFGQGTILTVHPNIQNPDPAVYQLRDSK-- 128
Query: 149 PLHSVAFLPCQAVG-SPPPHIRWYKNGNSLPPEDTRINVSSSGSL 192
S C ++ K+ + + T +++ S
Sbjct: 129 ---SSDKSVCLFTDFDSQTNVSQSKDSDVYITDKTVLDMRSMDFK 170
>3bp6_A Programmed cell death protein 1; PD-1, PD-L2, complex,
costimulation, glycoprotein, immunoglo domain, membrane,
transmembrane, receptor; 1.60A {Mus musculus} PDB:
3rnk_A 3sbw_A 3bp5_A 1npu_A 3rnq_A
Length = 117
Score = 28.9 bits (65), Expect = 0.84
Identities = 6/29 (20%), Positives = 15/29 (51%)
Query: 95 TLRIQGVQKEDAGFFVCSALSVAGSTTVR 123
+ I ++ D+G ++C A+S+ +
Sbjct: 74 HMNILDTRRNDSGIYLCGAISLHPKLKIE 102
>2qsq_A Carcinoembryonic antigen-related cell adhesion MO; glycoprotein,
GPI-anchor, immunoglobulin DOMA lipoprotein, membrane;
1.95A {Homo sapiens} PDB: 2qst_A 2ver_N* 2gk2_A
Length = 111
Score = 28.8 bits (64), Expect = 0.88
Identities = 14/50 (28%), Positives = 21/50 (42%), Gaps = 2/50 (4%)
Query: 81 PGNAY-GHLHVTQEGTLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVT 129
PG AY G + +L IQ + + DAGF+ + + A Q
Sbjct: 58 PGPAYSGREIIYPNASLLIQNIIQNDAGFYTLHVIK-SDLVNEEATGQFR 106
Score = 26.5 bits (58), Expect = 5.8
Identities = 7/36 (19%), Positives = 13/36 (36%)
Query: 1 MITEVKKSDEGKYQCYVQNMVGERETKPALLTVHAP 36
+I + ++D G Y +V E V+
Sbjct: 75 LIQNIIQNDAGFYTLHVIKSDLVNEEATGQFRVYPE 110
>1qfo_A Protein (sialoadhesin); immunoglobulin superfamily, carbohydrate
binding, immune system; HET: SIA GAL GLC; 1.85A {Mus
musculus} SCOP: b.1.1.1 PDB: 1od7_A* 1oda_A* 1od9_A*
1qfp_A 2bve_A* 1url_A*
Length = 119
Score = 28.7 bits (64), Expect = 0.97
Identities = 7/42 (16%), Positives = 17/42 (40%), Gaps = 2/42 (4%)
Query: 94 GTLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVTSVEDTP 135
L ++ ++ ED+G + + ++ T+V T
Sbjct: 79 CNLLLKDLKPEDSGTYNFRFEI--SDSNRWLDVKGTTVTVTT 118
Score = 27.5 bits (61), Expect = 2.6
Identities = 4/18 (22%), Positives = 8/18 (44%)
Query: 2 ITEVKKSDEGKYQCYVQN 19
+ ++K D G Y +
Sbjct: 83 LKDLKPEDSGTYNFRFEI 100
>2j6e_L IGM, FAB light chain; autoimmune complex human IGM rheumatoid
factor IGG1-FC, immunoglobulin C region, membrane,
glycoprotein, transmembrane; HET: NAG FUL BMA MAN NDG
GAL; 3.0A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2
Length = 234
Score = 29.7 bits (67), Expect = 1.0
Identities = 19/87 (21%), Positives = 32/87 (36%), Gaps = 10/87 (11%)
Query: 95 TLRIQGVQKEDAGFFVCSALSVAGSTTVRAF-----LQVTSVEDTPPPIVQVGPSNQTLP 149
+L I G++ ED + C+ + S + F L V P + PS++ L
Sbjct: 92 SLAISGLRSEDEADYYCA--TWDDSLSAVIFGGGTKLTVLGQPKAAPSVTLFPPSSEELQ 149
Query: 150 LHSVAFLPCQAVGSPPP--HIRWYKNG 174
+ L C P + W +G
Sbjct: 150 ANKAT-LVCLISDFFPGAVTVAWKADG 175
>3tjh_C 42F3 alpha; IG MHC, antigen recognition, TCR-PMHC, membrane
receptor, IM system; 2.12A {Mus musculus} PDB: 3tpu_A
3tfk_C 1j8h_D* 1fyt_D* 3rev_A 1mwa_A* 1g6r_A* 1tcr_A*
2ckb_A 1zgl_M 3c5z_A 1i9e_A* 2oi9_B 2e7l_A 2icw_I 3e2h_B
3e3q_D
Length = 226
Score = 29.6 bits (66), Expect = 1.0
Identities = 32/181 (17%), Positives = 54/181 (29%), Gaps = 33/181 (18%)
Query: 32 TVHAPPSFVVRPQDQKVGLNGIASFQCVAEGSPLPSVFW-TQEGSQVLMFPGNAYGHLHV 90
+V P + V + + L C S P +FW Q Q L Y V
Sbjct: 11 SVTQPDARVTVSEGASLQLR------CKYSYSATPYLFWYVQYPRQGLQMLLKYYSGDPV 64
Query: 91 TQEG--------------TLRIQGVQKEDAGFFVCSALSVAGSTTVRAF-----LQVTSV 131
Q LR V D+ + C+ +S G+ + +F L V+
Sbjct: 65 VQGVNGFEAEFSKSDSSFHLRKASVHWSDSAVYFCA-VSAKGTGSKLSFGKGAKLTVSPN 123
Query: 132 EDTPPPIVQVGPSNQTLPLHSVAFLPCQAVGSPPPH-IRWYKNGNSLPPEDTRINVSSSG 190
P P V ++ S C + K+ + + +++ S
Sbjct: 124 IQNPDPAVYQLRDSK-----SSDKSVCLFTDFDSQTNVSQSKDSDVYITDKCVLDMRSMD 178
Query: 191 S 191
Sbjct: 179 F 179
>3gsn_A RA14 TCR alpha chain (TRAV24, TRAJ49); HLA, human cytomegalovirus,
PP65, T cell receptor (TCR), immune response, public
response; 2.80A {Homo sapiens}
Length = 199
Score = 29.5 bits (66), Expect = 1.1
Identities = 23/173 (13%), Positives = 47/173 (27%), Gaps = 27/173 (15%)
Query: 36 PPSFVVRPQDQKVGLNGIASFQCVAEGSPLPSVFW-TQEGSQVLMFPGNAYGHLHVTQEG 94
P + + C S ++ W E ++ + ++G
Sbjct: 6 SPQSLHVQEGDSTNFT------CSFPSSNFYALHWYRWETAKSPEALFVMTLNGDEKKKG 59
Query: 95 -------------TLRIQGVQKEDAGFFVCSALSVAGSTTVR-AFLQVTSVEDTPPPIVQ 140
L I+G Q ED+ ++C+ + L V P P V
Sbjct: 60 RISATLNTKEGYSYLYIKGSQPEDSATYLCARNTGNQFYFGTGTSLTVIPNIQNPDPAVY 119
Query: 141 VGPSNQTLPLHSVAFLPCQAVGSPPPHIR-WYKNGNSLPPEDTRINVSSSGSL 192
++ S C K+ ++ + T +++ S
Sbjct: 120 QLRDSK-----SSDKSVCLFTDFDSQTNVSQSKDSDAYITDKTVLDMRSMDFK 167
>3c6l_A TCR 2W20 alpha chain; TCR-PMHC complex; 3.40A {Mus musculus} SCOP:
b.1.1.1 b.1.1.2
Length = 185
Score = 28.7 bits (64), Expect = 1.6
Identities = 21/122 (17%), Positives = 32/122 (26%), Gaps = 20/122 (16%)
Query: 32 TVHAPPSFVVRPQDQKVGLNGIASFQCVAEGSPLPSVFW-TQEGSQVLMFPGNAYGHLHV 90
V P + + + LN C E S W Q + +
Sbjct: 2 QVRQSPQSLTVWEGETAILN------CSYEDSTFDYFPWYHQFPGESPALLIAIRPVSNK 55
Query: 91 TQEG-------------TLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVTSVEDTPPP 137
++G +L I Q D+ + C+A L V P P
Sbjct: 56 KEDGRFTIFFNKREKKFSLHIADSQPGDSATYFCAASDNRIFFGDGTQLVVKPNIQNPEP 115
Query: 138 IV 139
V
Sbjct: 116 AV 117
>2q86_A Valpha14 TCR; INKT cells, TCR, glycolipid recognition, innate
immunity, IM system; HET: NAG BMA MAN FUC; 1.85A {Mus
musculus} PDB: 3quy_C* 3o9w_C* 3qux_C* 3o8x_C* 3quz_C*
3rtq_C* 3rzc_C* 3ta3_C* 3tvm_C* 3qi9_C* 3ard_C* 3are_C*
3arf_C* 3arg_C* 3he6_C* 3he7_C* 3arb_C* 3scm_C* 3sda_C*
3sdc_C* ...
Length = 229
Score = 28.9 bits (64), Expect = 1.6
Identities = 19/130 (14%), Positives = 35/130 (26%), Gaps = 28/130 (21%)
Query: 36 PPSFVVRPQDQKVGLNGIASFQCVAEGSPLPSVFWT-QEGSQVLMFPGNAYGHLHVTQEG 94
P +V Q + L C +P + W Q+ + L+ T G
Sbjct: 7 SPQSLVVRQGENCVLQ------CNYSVTPDNHLRWYKQDTGKGLVLLTVLVDQKDKTSNG 60
Query: 95 -------------TLRIQGVQKEDAGFFVCSA-----LSVAGSTTVRAFLQVTSVEDTPP 136
TL I +D + C T + + +++ P
Sbjct: 61 RYSATLDKDAKHSTLHITATLLDDTATYFCVVGDRGSALFGSGTQ---LIVIPYIQNPEP 117
Query: 137 PIVQVGPSNQ 146
+ Q+
Sbjct: 118 AVYQLKDPRS 127
>3noi_A Natural cytotoxicity triggering receptor 3; immune system, innate
immunity, immunoglobulin-like I2 type natural killer
cell activation; HET: 1PG; 1.84A {Homo sapiens} PDB:
3pv6_B*
Length = 120
Score = 28.0 bits (62), Expect = 1.7
Identities = 22/109 (20%), Positives = 29/109 (26%), Gaps = 24/109 (22%)
Query: 30 LLTVHAPPSFVVRPQDQKVGLNGIASFQC----VAEGSPLPSVFWTQ----EGSQVLMFP 81
L V PP A C + SV W + G +V
Sbjct: 8 ALWVSQPPEIRTLEGSS-------AFLPCSFNASQGRLAIGSVTWFRDEVVPGKEVRNGT 60
Query: 82 GNAYGHLHVTQEG--------TLRIQGVQKEDAGFFVCSALSVAGSTTV 122
G L L I+ V+ DA +VC + V G
Sbjct: 61 PEFRGRLAPLASSRFLHDHQAELHIRDVRGHDASIYVC-RVEVLGLGVG 108
>1xt5_A Variable region-containing chitin-binding protein 3; innate
immunity, VCBP, primordial antigen receptor, florida
lancelet, amphioxus; 1.15A {Branchiostoma floridae}
Length = 135
Score = 28.3 bits (62), Expect = 1.7
Identities = 9/32 (28%), Positives = 12/32 (37%)
Query: 2 ITEVKKSDEGKYQCYVQNMVGERETKPALLTV 33
+T V D G+Y C V E +V
Sbjct: 96 LTHVHPQDGGRYWCQVAQWSIRTEFGLDAKSV 127
>3r08_E T-cell surface glycoprotein CD3 epsilon chain; antibody, T-cell
receptor, signalling, immune SY; 4.10A {Cricetulus
migratorius}
Length = 82
Score = 27.3 bits (60), Expect = 2.0
Identities = 12/39 (30%), Positives = 19/39 (48%), Gaps = 3/39 (7%)
Query: 212 SGETALLECGPPKGQPEPTLHWKKNGQFIDLESSKRVSI 250
SG + L C P + L W+KNGQ + + K + +
Sbjct: 13 SGTSVELTC-PL--DSDENLKWEKNGQELPQKHDKHLVL 48
>2p24_A H-2 class II histocompatibility antigen, A-U ALPH; MHC, I-AU,
immunoglobulin fold, MBP, immune system; 2.15A {Mus
musculus} SCOP: b.1.1.2 d.19.1.1
Length = 236
Score = 28.7 bits (64), Expect = 2.1
Identities = 12/61 (19%), Positives = 17/61 (27%), Gaps = 3/61 (4%)
Query: 132 EDTPPPIVQVGPSNQTLPLHSVAFLPCQAVGSPPPHI--RWYKNGNSLPPEDTRINVSSS 189
P V P + L L C PP I W +N S+ + +
Sbjct: 116 ATNEAPQATVFPK-SPVLLGQPNTLICFVDNIFPPVINITWLRNSKSVADGVYETSFFVN 174
Query: 190 G 190
Sbjct: 175 R 175
>2or7_A T-cell immunoglobulin and mucin domain- containing protein 2; beta
barrel, immunoglobulin fold, IGV domain, TIM, immune
system; 1.50A {Mus musculus}
Length = 115
Score = 27.6 bits (61), Expect = 2.2
Identities = 8/37 (21%), Positives = 10/37 (27%), Gaps = 1/37 (2%)
Query: 2 ITEVKKSDEGKYQCYVQNMVGERETKPAL-LTVHAPP 37
I D G Y C V+ L + P
Sbjct: 78 IENTVVGDGGPYCCVVEIPGAFHFVDYMLEVKPELVP 114
>2frg_P TREM-like transcript-1; immunoglobulin-like, beta-sandwich, cell
surface receptor, triggering receptor, platelet
receptor, ITIM, immune system; 1.19A {Homo sapiens}
Length = 106
Score = 27.5 bits (61), Expect = 2.3
Identities = 9/36 (25%), Positives = 16/36 (44%), Gaps = 1/36 (2%)
Query: 2 ITEVKKSDEGKYQCYVQNMVGERETKPALLTVHAPP 37
+ +++ D G+Y C V G + L + PP
Sbjct: 72 MVTLQEEDAGEYGCMVDGARGPQILHRVSLNI-LPP 106
>1ypz_E T cell receptor delta, beta-2-microglobulin; H2-T22 protein, T cell
receptor delta, immune system; HET: NAG MAN FUC; 3.40A
{Mus musculus} SCOP: b.1.1.1 b.1.1.2
Length = 207
Score = 28.0 bits (62), Expect = 2.9
Identities = 24/105 (22%), Positives = 36/105 (34%), Gaps = 11/105 (10%)
Query: 95 TLRIQGVQKEDAGFFVCSA---LSVAGSTTVRAFL---QVTSVEDTPPPIVQVGPSNQTL 148
TL I+ Q ED+G + C+A G L Q T V P PS
Sbjct: 72 TLHIRDAQLEDSGTYFCAADTWHISEGYELGTDKLVFGQGTQVTVEPKSQPPAKPS--VF 129
Query: 149 PLHSVAFLPCQAVGSPPPHIR--WYKNGNSLPPEDTRINVSSSGS 191
+ + + C P + ++ + D I +S SG
Sbjct: 130 IMKNGTNVACLVKDFYPKEVTISL-RSSKKIVEFDPAIVISPSGK 173
>2pnd_A V-SET and immunoglobulin domain containing 4; complement
receptor, IG-like domain, immune system; 1.00A {Mus
musculus} PDB: 2icc_A 2ice_S* 2icf_S*
Length = 119
Score = 27.2 bits (60), Expect = 3.0
Identities = 5/18 (27%), Positives = 7/18 (38%)
Query: 2 ITEVKKSDEGKYQCYVQN 19
I ++ D Y C V
Sbjct: 82 INTLQMDDRNHYTCEVTW 99
Score = 26.4 bits (58), Expect = 5.3
Identities = 5/17 (29%), Positives = 10/17 (58%)
Query: 95 TLRIQGVQKEDAGFFVC 111
+L+I +Q +D + C
Sbjct: 79 SLQINTLQMDDRNHYTC 95
>3khq_A B-cell antigen receptor complex-associated protei chain; CD79B,
CD79A, IG-beta, BCR, IG domain, V-SET, immunoglobulin
protein binding; HET: FLC GSH; 1.70A {Mus musculus} PDB:
3kho_A*
Length = 133
Score = 27.3 bits (61), Expect = 3.4
Identities = 10/28 (35%), Positives = 14/28 (50%)
Query: 95 TLRIQGVQKEDAGFFVCSALSVAGSTTV 122
TL IQ +Q ED G + C + + V
Sbjct: 78 TLTIQNIQYEDNGIYFCKQKCDSANHNV 105
>3tbm_A Putative uncharacterized protein; iron-sulfur, CDGSH, metal binding
protein; HET: 2PE TLA; 1.80A {Ralstonia solanacearum}
Length = 69
Score = 26.0 bits (57), Expect = 3.4
Identities = 10/48 (20%), Positives = 17/48 (35%)
Query: 180 EDTRINVSSSGSLQIDVLRDDFRAEPKDTRVASGETALLECGPPKGQP 227
+D I ++G I ++ V G+ L CG +P
Sbjct: 6 DDVVITARNNGPYHIKGSFRIVTQGGRELPVEQGQAWLCRCGHSLNKP 53
>2l76_A Nfatc2-interacting protein; ubiquitin-like domain, structural
genomics, PSI-biology, Pro structure initiative; NMR
{Homo sapiens}
Length = 95
Score = 26.5 bits (58), Expect = 3.6
Identities = 10/34 (29%), Positives = 11/34 (32%)
Query: 149 PLHSVAFLPCQAVGSPPPHIRWYKNGNSLPPEDT 182
PL SV +G P I L P T
Sbjct: 42 PLQSVVDHMATHLGVSPSRILLLFGETELSPTAT 75
>1q0x_L FAB 9B1, light chain; anti-morphine antibody, FAB fragment, immune
system; HET: PG4; 1.60A {Mus musculus} SCOP: b.1.1.1
b.1.1.2 PDB: 1q0y_L* 1ngp_L* 1ngq_L 3ks0_L* 1gig_L
2vir_A 2vis_A* 2vit_A 1sm3_L 4a6y_L 1ind_L* 1ine_L*
1yuh_L* 2zpk_L 3rhw_K* 3ri5_K* 3ria_K* 3rif_K* 1mfe_L*
1mfb_L* ...
Length = 212
Score = 27.7 bits (62), Expect = 3.7
Identities = 20/89 (22%), Positives = 28/89 (31%), Gaps = 12/89 (13%)
Query: 95 TLRIQGVQKEDAGFFVCSALSVAGSTTVRAF-----LQVTSVEDTPPPIVQVGPSNQTLP 149
L I G Q ED + C+ S F L V + P + PS++ L
Sbjct: 74 ALTITGAQTEDEAIYFCA----LWSNNKLVFGGGTKLTVLGQPKSSPTVTLFPPSSEELS 129
Query: 150 LHSVAFLPCQAVGSPPP--HIRWYKNGNS 176
L C P + W +G
Sbjct: 130 TAKAT-LVCTITDFYPGVVTVDWKVDGTP 157
>3bia_X T-cell immunoglobulin and mucin domain- containing protein 4;
beta barrel, immunoglobulin fold, IGV domain, TIM,
glycoprotein; HET: TLA; 2.20A {Mus musculus} PDB:
3bi9_X* 3bib_X*
Length = 116
Score = 26.8 bits (59), Expect = 3.9
Identities = 5/18 (27%), Positives = 9/18 (50%)
Query: 2 ITEVKKSDEGKYQCYVQN 19
I+ + D G Y C ++
Sbjct: 77 ISNTNRGDSGVYCCRIEV 94
>3nl4_L Antigen binding fragment, immunoglobulin IGG - LI; FAB, rabbit,
conformation-specific, amyloid, immune system; 1.54A
{Oryctolagus cuniculus}
Length = 213
Score = 27.5 bits (62), Expect = 4.0
Identities = 19/87 (21%), Positives = 32/87 (36%), Gaps = 8/87 (9%)
Query: 95 TLRIQGVQKEDAGFFVCSALSVAGSTTVRAFLQVTSVE----DTPPPIVQVGPSNQTLPL 150
TL I ++ DA + C S + T +F T V P ++ PS +
Sbjct: 72 TLTISDLECADAATYYC--QSTYENPTYVSFGGGTEVGVKGDPVAPTVLIFPPSADLVAT 129
Query: 151 HSVAFLPCQAVG-SPPPHIRWYKNGNS 176
+ + C A P + W +G +
Sbjct: 130 GT-VTIVCVANKYFPDVTVTWEVDGTT 155
>3gkb_A Putative enoyl-COA hydratase; structural genomics, unknown
function, PSI-2, protein struct initiative; 1.80A
{Streptomyces avermitilis}
Length = 287
Score = 27.6 bits (62), Expect = 4.7
Identities = 9/25 (36%), Positives = 11/25 (44%), Gaps = 6/25 (24%)
Query: 207 DTRVASGETALLECGPPKGQPEPTL 231
D A+ ETA L GQ E +
Sbjct: 129 DMAFAAAETAGL------GQIEALM 147
>3gwi_A Magnesium-transporting ATPase, P-type 1; P-type ATPase, nucleotide
binding, ATP binding, MGTA, membra protein, cell inner
membrane; 1.60A {Escherichia coli}
Length = 170
Score = 27.2 bits (61), Expect = 5.1
Identities = 16/69 (23%), Positives = 26/69 (37%), Gaps = 18/69 (26%)
Query: 214 ETALLECGPPKGQPEPTLHWKKNGQFIDLESSKRVSILGDPWFDSRRSRSIFGSVLGALS 273
+TA+LE + W+K + P FD R R SV+ A +
Sbjct: 37 DTAVLEGTDEESARSLASRWQKIDEI--------------P-FDFERRRM---SVVVAEN 78
Query: 274 DDQWKLIAK 282
+ +L+ K
Sbjct: 79 TEHHQLVCK 87
>3h0u_A Putative enoyl-COA hydratase; structural genomics, isomerase,
PSI-2, protein structure initiative; 1.50A {Streptomyces
avermitilis}
Length = 289
Score = 27.6 bits (62), Expect = 5.1
Identities = 11/25 (44%), Positives = 13/25 (52%), Gaps = 6/25 (24%)
Query: 207 DTRVASGETALLECGPPKGQPEPTL 231
D R AS E A+L GQPE +
Sbjct: 126 DMRFASRENAIL------GQPEVGI 144
>1nez_G T-cell surface glycoprotein CD8 alpha chain; immune system; HET:
NAG; 2.10A {Synthetic} SCOP: b.1.1.1 PDB: 1bqh_G*
3b9k_A* 2atp_A* 2arj_R
Length = 128
Score = 26.8 bits (59), Expect = 5.5
Identities = 7/21 (33%), Positives = 12/21 (57%)
Query: 95 TLRIQGVQKEDAGFFVCSALS 115
L + KE+ G++ CS +S
Sbjct: 86 VLTLNKFSKENEGYYFCSVIS 106
>3kg5_A B-cell antigen receptor complex-associated protei chain; CD79B,
IG-beta, BCR, immunoglobulin domain, protein binding;
3.20A {Homo sapiens}
Length = 134
Score = 26.6 bits (59), Expect = 5.8
Identities = 9/21 (42%), Positives = 12/21 (57%)
Query: 93 EGTLRIQGVQKEDAGFFVCSA 113
TL IQG++ ED G + C
Sbjct: 79 LATLTIQGIRFEDNGIYFCQQ 99
>1p58_A Major envelope protein E; flavivirus, flaviviridae, glycoprotein E
from borne encephalitis virus, membrane protein M,
cryo-EM, ICOS virus; 9.50A {Dengue virus 2 puerto rico}
SCOP: i.17.1.1
Length = 495
Score = 27.6 bits (61), Expect = 6.3
Identities = 19/77 (24%), Positives = 28/77 (36%), Gaps = 15/77 (19%)
Query: 211 ASGETALLECGPP---------KGQPEPTLHWKKNGQFI------DLESSKRVSILGDPW 255
+E PP + L W K G I + +KR++ILGD
Sbjct: 360 EKDSPVNIEAEPPFGDSYIIIGVEPGQLKLDWFKKGSSIGQMFETTMRGAKRMAILGDTA 419
Query: 256 FDSRRSRSIFGSVLGAL 272
+D +F S+ AL
Sbjct: 420 WDFGSLGGVFTSIGKAL 436
>1ymm_D T cell receptor alpha chain; protein-protein complex, T cell
repertoire, auto-immunity, I system; HET: NAG; 3.50A
{Homo sapiens} SCOP: b.1.1.1
Length = 207
Score = 26.9 bits (59), Expect = 7.4
Identities = 12/58 (20%), Positives = 20/58 (34%), Gaps = 6/58 (10%)
Query: 95 TLRIQGVQKEDAGFFVCSALSVAGSTTVRAF-----LQVTSVEDTPPPIVQVGPSNQT 147
+L I + D + C A T F L+V + P P V +++
Sbjct: 73 SLLITASRAADTASYFC-ATDTTSGTYKYIFGTGTRLKVLANIQNPDPAVYQLRDSKS 129
>3mbe_C I-AG7; T cell receptor, histocompatability antigen, MHC class II, I
immune system; HET: NAG; 2.89A {Mus musculus}
Length = 229
Score = 26.5 bits (58), Expect = 8.3
Identities = 16/50 (32%), Positives = 20/50 (40%), Gaps = 6/50 (12%)
Query: 95 TLRIQGVQKEDAGFFVCSALSVAGSTTVRAF-----LQVTSVEDTPPPIV 139
TL I+ Q ED+G + C+ GS F L V P P V
Sbjct: 71 TLHIKDAQLEDSGTYFCA-AEDGGSGNKLIFGTGTLLSVKPNIQNPEPAV 119
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.316 0.133 0.406
Gapped
Lambda K H
0.267 0.0526 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,343,704
Number of extensions: 248474
Number of successful extensions: 2666
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1572
Number of HSP's successfully gapped: 913
Length of query: 292
Length of database: 6,701,793
Length adjustment: 93
Effective length of query: 199
Effective length of database: 4,105,140
Effective search space: 816922860
Effective search space used: 816922860
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 57 (26.2 bits)