BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy15129
(308 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1X5H|A Chain A, The Solution Structure Of The Third Fibronectin Type Iii
Domain Of Human Neogenin
Length = 132
Score = 65.5 bits (158), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 36/99 (36%), Positives = 52/99 (52%)
Query: 88 SNSMLVQSLEDVPSAAPEAMSAGVLNLTSAFVKWSPPPPQHHNGILLGYKIQVKAYNSTK 147
S + V++L DVPSAAP+ +S V N S + W PP P NG + GYKI+ + +
Sbjct: 6 SGDVAVRTLSDVPSAAPQNLSLEVRNSKSIMIHWQPPAPATQNGQITGYKIRYRKASRKS 65
Query: 148 ILAQMSLNASTTSVLLNNLTSGAVYTARVVAYTRAGLGP 186
+ + ++ + S L+ L G Y RV A T G GP
Sbjct: 66 DVTETLVSGTQLSQLIEGLDRGTEYNFRVAALTINGTGP 104
>pdb|2ED9|A Chain A, Solution Structure Of The Third Fibronectin Type Iii
Domain Of Human Netrin Receptor Dcc
Length = 124
Score = 56.2 bits (134), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 36/101 (35%), Positives = 53/101 (52%), Gaps = 2/101 (1%)
Query: 88 SNSMLVQSLEDVPSAAPEAMSAGVLNLTSAFVKWSPPPPQHHNGILLGYKIQVKAYNSTK 147
++ + V +L DVPSA P+ +S V+N S V W PPP NG + GYKI+ + +T+
Sbjct: 16 TDDITVVTLSDVPSAPPQNVSLEVVNSRSIKVSWLPPPSGTQNGFITGYKIRHR--KTTR 73
Query: 148 ILAQMSLNASTTSVLLNNLTSGAVYTARVVAYTRAGLGPYS 188
+L + L L G+ Y+ +V A T G GP S
Sbjct: 74 RGEMETLEPNNLWYLFTGLEKGSQYSFQVSAMTVNGTGPPS 114
>pdb|2DBJ|A Chain A, Solution Structures Of The Fn3 Domain Of Human Proto-
Oncogene Tyrosine-Protein Kinase Mer Precursor
Length = 124
Score = 54.3 bits (129), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 40/121 (33%), Positives = 63/121 (52%), Gaps = 12/121 (9%)
Query: 88 SNSMLVQSLEDVPSAAPEAMSAGVLNLTS--AFVKWSPPPPQHHNGILLGYKIQ---VKA 142
S +L + E PS AP ++ LN +S ++W PP + +G L+GY+I A
Sbjct: 6 SGWILASTTEGAPSVAPLNVTV-FLNESSDNVDIRWMKPPTKQQDGELVGYRISHVWQSA 64
Query: 143 YNSTKILAQMSLNASTT--SVLLNNLTSGAVYTARVVAYTRAGLGPYSAPVTLVMDPHAP 200
S ++L ++ N S SV ++N T T R+ A TR G+GP+S PV + + H+
Sbjct: 65 GISKELLEEVGQNGSRARISVQVHNATC----TVRIAAVTRGGVGPFSDPVKIFIPAHSG 120
Query: 201 P 201
P
Sbjct: 121 P 121
>pdb|2DLH|A Chain A, Solution Structure Of The Second Fn3 Domain Of Human
Receptor-Type Tyrosine-Protein Phosphatase Delta
Length = 121
Score = 48.9 bits (115), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 30/108 (27%), Positives = 56/108 (51%), Gaps = 3/108 (2%)
Query: 88 SNSMLVQSLEDVPSAAPEAMSAGVLNLTSAFVKWSPPPPQHHNGILLGYKIQVKAYNSTK 147
S +L Q+ E PS+AP + A +L+ T+ V+W P+ NG + GY++ +
Sbjct: 6 SGPVLTQTSEQAPSSAPRDVQARMLSSTTILVQWK--EPEEPNGQIQGYRVYYTMDPTQH 63
Query: 148 ILAQMSLNASTTSV-LLNNLTSGAVYTARVVAYTRAGLGPYSAPVTLV 194
+ M N + + + + NL Y+ +V+A+T G GP S+ + ++
Sbjct: 64 VNNWMKHNVADSQITTIGNLVPQKTYSVKVLAFTSIGDGPLSSDIQVI 111
>pdb|2EDX|A Chain A, Solution Structures Of The Fn3 Domain Of Human Receptor-
Type Tyrosine-Protein Phosphatase F
Length = 134
Score = 44.7 bits (104), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 34/124 (27%), Positives = 55/124 (44%), Gaps = 9/124 (7%)
Query: 88 SNSMLVQSLEDVPSAAPEAMSAGVLNLTSAFVKWSPPPPQHHNGILLGYKIQVKAYNSTK 147
S ++ ++ + PSA P+ + + T+ V W PPP NG++ Y + +A +
Sbjct: 6 SGTIEARTAQSTPSAPPQKVMCVSMGSTTVRVSWVPPPADSRNGVITQYSVAYEAVDGED 65
Query: 148 ----ILAQMSLNASTTSVLLNNLTSGAVYTARVVAYTRAGLGPYSAPVTLVMD---PHAP 200
++ +S S S L L Y V A+T G GP S+PV + D P P
Sbjct: 66 RGRHVVDGISREHS--SWDLVGLEKWTEYRVWVRAHTDVGPGPESSPVLVRTDEDVPSGP 123
Query: 201 PHAL 204
P +
Sbjct: 124 PRKV 127
>pdb|1WFN|A Chain A, The Fourth Fn3 Domain Of Human Sidekick-2
Length = 119
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 36/102 (35%), Positives = 45/102 (44%), Gaps = 3/102 (2%)
Query: 88 SNSMLVQSLEDVPSAAPEAMSAGVLNLTSAFVKWSPPPPQHHNGILLGYKIQVKAYNSTK 147
S LV++ EDVP + +L+ TS V W P NGIL GY+I + YN T
Sbjct: 6 SGPQLVRTHEDVPGPVGHLSFSEILD-TSLKVSWQEP--GEKNGILTGYRISWEEYNRTN 62
Query: 148 ILAQMSLNASTTSVLLNNLTSGAVYTARVVAYTRAGLGPYSA 189
L T + LT+ YT V A T G G SA
Sbjct: 63 TRVTHYLPNVTLEYRVTGLTALTTYTIEVAAMTSKGQGQVSA 104
>pdb|1VA9|A Chain A, Solution Structure Of The Second Fniii Domain Of Dscaml1
Protein
Length = 122
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/99 (27%), Positives = 42/99 (42%), Gaps = 4/99 (4%)
Query: 97 EDVPSAAPEAMSAGVLNLTSAFVKWSPPPPQHHNGILLGYKIQVK----AYNSTKILAQM 152
E P P ++ + S V W P + NG++ GY+I + N + +M
Sbjct: 12 EAAPDGPPMDVTLQPVTSQSIQVTWKAPKKELQNGVIRGYQIGYRENSPGSNGQYSIVEM 71
Query: 153 SLNASTTSVLLNNLTSGAVYTARVVAYTRAGLGPYSAPV 191
+ L+NL A Y V A+ RAG GP S+ +
Sbjct: 72 KATGDSEVYTLDNLKKFAQYGVVVQAFNRAGTGPSSSEI 110
>pdb|2V5Y|A Chain A, Crystal Structure Of The Receptor Protein Tyrosine
Phosphatase Mu Ectodomain
Length = 731
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 30/109 (27%), Positives = 48/109 (44%), Gaps = 9/109 (8%)
Query: 85 RQPSNSMLVQSLEDVPSAAPEAMSAGVLNLTSAFVKWSPPPPQHHNGILLGYKIQVKAYN 144
R+ S ++VQ+ ED+P A P G F++W P + G++ Y+I KA +
Sbjct: 447 RKESQELIVQTDEDLPGAVPTESIQGSTFEEKIFLQWREPTQTY--GVITLYEITYKAVS 504
Query: 145 S-------TKILAQMSLNASTTSVLLNNLTSGAVYTARVVAYTRAGLGP 186
S + ++S + T L L G Y+ + A T G GP
Sbjct: 505 SFDPEIDLSNQSGRVSKLGNETHFLFFGLYPGTTYSFTIRASTAKGFGP 553
>pdb|2JLL|A Chain A, Crystal Structure Of Ncam2 Igiv-Fn3ii
Length = 389
Score = 37.0 bits (84), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 32/97 (32%), Positives = 48/97 (49%), Gaps = 5/97 (5%)
Query: 93 VQSLEDVPSAAPEAMSAGVLNLTSAFVKWSPPPPQHHNGI-LLGYKIQVKAYNSTKILAQ 151
+ +L DVPS+ P + L+ T+A V ++ P H G+ + Y++ VK S +I
Sbjct: 189 ILALADVPSS-PYGVKIIELSQTTAKVSFNKP--DSHGGVPIHHYQVDVKEVAS-EIWKI 244
Query: 152 MSLNASTTSVLLNNLTSGAVYTARVVAYTRAGLGPYS 188
+ + T V+LNNL Y RV A G G YS
Sbjct: 245 VRSHGVQTMVVLNNLEPNTTYEIRVAAVNGKGQGDYS 281
>pdb|1UEN|A Chain A, Solution Structure Of The Third Fibronectin Iii Domain Of
Human Kiaa0343 Protein
Length = 125
Score = 36.6 bits (83), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 33/102 (32%), Positives = 42/102 (41%), Gaps = 13/102 (12%)
Query: 97 EDVPSAAPEAMSAGVLNLTSAFVKWSPPPPQHHNGILLGYKIQVKAYNST---------- 146
ED+P AP + V+N T A V W P P + G L GY+I S+
Sbjct: 11 EDLPMVAPGNVRVNVVNSTLAEVHWDPVPLKSIRGHLQGYRIYYWKTQSSSKRNRRHIEK 70
Query: 147 KILAQMSLNASTTSVLLNNLTSGAVYTARVVAYTRAGLGPYS 188
KIL + S T +L L + YT V G GP S
Sbjct: 71 KIL---TFQGSKTHGMLPGLEPFSHYTLNVRVVNGKGEGPAS 109
>pdb|2XYC|A Chain A, Crystal Structure Of Ncam2 Igiv-Fn3i
Length = 291
Score = 36.2 bits (82), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 30/97 (30%), Positives = 44/97 (45%), Gaps = 5/97 (5%)
Query: 93 VQSLEDVPSAAPEAMSAGVLNLTSAFVKWSPPPPQHHNGI-LLGYKIQVKAYNSTKILAQ 151
+ +L DVPS+ ++ L+ K S P H G+ + Y++ VK S +I
Sbjct: 189 ILALADVPSSP---YGVKIIELSQTTAKVSFNKPDSHGGVPIHHYQVDVKEVAS-EIWKI 244
Query: 152 MSLNASTTSVLLNNLTSGAVYTARVVAYTRAGLGPYS 188
+ + T V+LNNL Y RV A G G YS
Sbjct: 245 VRSHGVQTMVVLNNLEPNTTYEIRVAAVNGKGQGDYS 281
>pdb|2ED7|A Chain A, Solution Structure Of The First Fibronectin Type Iii
Domain Of Human Netrin Receptor Dcc
Length = 119
Score = 35.4 bits (80), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 32/117 (27%), Positives = 51/117 (43%), Gaps = 10/117 (8%)
Query: 87 PSNSMLVQSLEDVPSAAPEAMSAGVLNLTSAFVKWSPPPPQHHNGILLGYKIQVKAYNST 146
PS+S+L + DV VL ++S FV+ S PP G + + +
Sbjct: 12 PSSSVLPSAPRDV---------VPVL-VSSRFVRLSWRPPAEAKGNIQTFTVFFSREGDN 61
Query: 147 KILAQMSLNASTTSVLLNNLTSGAVYTARVVAYTRAGLGPYSAPVTLVMDPHAPPHA 203
+ A + + + + NL A+YT RVVAY G G S P+ + P + P +
Sbjct: 62 RERALNTTQPGSLQLTVGNLKPEAMYTFRVVAYNEWGPGESSQPIKVATQPESGPSS 118
>pdb|2DJS|A Chain A, Solution Structures Of The Fn3 Domain Of Human Ephrin
Type- B Receptor 1
Length = 108
Score = 35.0 bits (79), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 37/75 (49%), Gaps = 1/75 (1%)
Query: 119 VKWSPPPPQHHNGILLGYKIQVKAYNSTKILAQMSLNASTTSVLLNNLTSGAVYTARVVA 178
+ S P P+ NGI+L Y+I+ + + M+ + T + ++ L G VY +V A
Sbjct: 24 ITLSWPQPEQPNGIILDYEIRYYEKEHNEFNSSMA-RSQTNTARIDGLRPGMVYVVQVRA 82
Query: 179 YTRAGLGPYSAPVTL 193
T AG G +S +
Sbjct: 83 RTVAGYGKFSGKMCF 97
>pdb|3B83|A Chain A, Tba
pdb|3B83|B Chain B, Tba
pdb|3B83|C Chain C, Tba
pdb|3B83|D Chain D, Tba
pdb|3B83|E Chain E, Tba
pdb|3B83|F Chain F, Tba
pdb|3B83|G Chain G, Tba
pdb|3B83|H Chain H, Tba
Length = 100
Score = 34.7 bits (78), Expect = 0.062, Method: Composition-based stats.
Identities = 29/83 (34%), Positives = 41/83 (49%), Gaps = 12/83 (14%)
Query: 112 LNLTSAFVKWSPP--PPQHHNGILLGYKIQVKAYNSTKILAQMSLNASTTSVLLNNLTSG 169
+ LT+A V W PP P + GIL+ + + + T + L +S TS+ L NL
Sbjct: 13 ITLTTAVVTWQPPILPIE---GILVTFGRKNDPSDETTV----DLTSSITSLTLTNLEPN 65
Query: 170 AVYTARVVAYTRAGLGPYSAPVT 192
Y R+VA R G YS PV+
Sbjct: 66 TTYEIRIVA--RNG-QQYSPPVS 85
>pdb|2EDY|A Chain A, Solution Structures Of The Fn3 Domain Of Human Receptor-
Type Tyrosine-Protein Phosphatase F
Length = 103
Score = 34.7 bits (78), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 22/88 (25%), Positives = 38/88 (43%), Gaps = 3/88 (3%)
Query: 104 PEAMSAGVLNLTSAFVKWSPPPPQHHNGILLGYKIQVKAYNSTKILAQMSLNASTTSVLL 163
P+ + L ++ + W PP NG ++ Y + + NS + L ++ + T L
Sbjct: 12 PQNLHVTGLTTSTTELAWDPPVLAERNGRIISYTVVFRDINSQQELQNITTD---TRFTL 68
Query: 164 NNLTSGAVYTARVVAYTRAGLGPYSAPV 191
L Y +V A+T G GP S +
Sbjct: 69 TGLKPDTTYDIKVRAWTSKGSGPLSPSI 96
>pdb|2DOC|A Chain A, Solution Structure Of The Fibronectin Type-Iii Domain Of
Human Neural Cell Adhesion Molecule 2
Length = 119
Score = 34.3 bits (77), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 33/101 (32%), Positives = 47/101 (46%), Gaps = 13/101 (12%)
Query: 93 VQSLEDVPSAAPEAMSAGVLNLTSAFVKWSPP-----PPQHHNGILLGYKIQVKAYNSTK 147
+ +L DVPS+ P + L+ T+A V ++ P P HH Y++ VK S +
Sbjct: 11 ILALADVPSS-PYGVKIIELSQTTAKVSFNKPDSHGGVPIHH------YQVDVKEVAS-E 62
Query: 148 ILAQMSLNASTTSVLLNNLTSGAVYTARVVAYTRAGLGPYS 188
I + + T V+LNNL Y RV A G G YS
Sbjct: 63 IWKIVRSHGVQTMVVLNNLEPNTTYEIRVAAVNGKGQGDYS 103
>pdb|2DN7|A Chain A, Solution Structures Of The 6th Fn3 Domain Of Human
Receptor- Type Tyrosine-Protein Phosphatase F
Length = 107
Score = 33.5 bits (75), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 21/79 (26%), Positives = 33/79 (41%), Gaps = 3/79 (3%)
Query: 107 MSAGVLNLTSAFVKWSPPPPQHHNGILLGYKIQVKAYNSTKILAQMSLNASTTSVLLNNL 166
M + +A ++W PP + G LLGY++Q + + + + L
Sbjct: 13 MMISTTAMNTALLQWHPP--KELPGELLGYRLQYCRADEARP-NTIDFGKDDQHFTVTGL 69
Query: 167 TSGAVYTARVVAYTRAGLG 185
G Y R+ A RAGLG
Sbjct: 70 HKGTTYIFRLAAKNRAGLG 88
>pdb|1YRL|A Chain A, Escherichia Coli Ketol-Acid Reductoisomerase
pdb|1YRL|B Chain B, Escherichia Coli Ketol-Acid Reductoisomerase
pdb|1YRL|C Chain C, Escherichia Coli Ketol-Acid Reductoisomerase
pdb|1YRL|D Chain D, Escherichia Coli Ketol-Acid Reductoisomerase
Length = 491
Score = 33.1 bits (74), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 39/89 (43%), Gaps = 8/89 (8%)
Query: 191 VTLVMDPHAPPHALPSDILITHLVLIHSPIQVPGSDRSTQSSLPHNQYHSGTRQDWINED 250
+TL+MD + P L + L L I +P+ D + ++ SG DW N+D
Sbjct: 270 ITLMMDRLSNPAKLRAYALSEQLKEIMAPLFQKHMD-----DIISGEFSSGMMADWANDD 324
Query: 251 ARM---RYEESRGQYEDSRNYEDGRGNYE 276
++ R E + +E + YE G E
Sbjct: 325 KKLLTWREETGKTAFETAPQYEGKIGEQE 353
>pdb|3ULK|A Chain A, E. Coli Ketol-Acid Reductoisomerase In Complex With Nadph
And Mg2+
pdb|3ULK|B Chain B, E. Coli Ketol-Acid Reductoisomerase In Complex With Nadph
And Mg2+
Length = 491
Score = 33.1 bits (74), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 39/89 (43%), Gaps = 8/89 (8%)
Query: 191 VTLVMDPHAPPHALPSDILITHLVLIHSPIQVPGSDRSTQSSLPHNQYHSGTRQDWINED 250
+TL+MD + P L + L L I +P+ D + ++ SG DW N+D
Sbjct: 270 ITLMMDRLSNPAKLRAYALSEQLKEIMAPLFQKHMD-----DIISGEFSSGMMADWANDD 324
Query: 251 ARM---RYEESRGQYEDSRNYEDGRGNYE 276
++ R E + +E + YE G E
Sbjct: 325 KKLLTWREETGKTAFETAPQYEGKIGEQE 353
>pdb|1WFO|A Chain A, The Eighth Fn3 Domain Of Human Sidekick-2
Length = 130
Score = 32.7 bits (73), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 44/96 (45%), Gaps = 4/96 (4%)
Query: 91 MLVQSLEDVPSAAPEAMSAGVLNLTSAFVKWSPPPPQHHNGILLGYKIQVKAYNSTKILA 150
+L ++L+DVP P + + TS + W PP NGI+L Y+I + +T A
Sbjct: 19 ILERTLDDVP-GPPMGILFPEVRTTSVRLIWQPP--AAPNGIILAYQITHRLNTTTANTA 75
Query: 151 QMS-LNASTTSVLLNNLTSGAVYTARVVAYTRAGLG 185
+ L S L +VY R+ A TR G G
Sbjct: 76 TVEVLAPSARQYTATGLKPESVYLFRITAQTRKGWG 111
>pdb|3TEU|A Chain A, Crystal Structure Of Fibcon
Length = 98
Score = 32.0 bits (71), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 34/76 (44%), Gaps = 5/76 (6%)
Query: 103 APEAMSAGVLNLTSAFVKWSPPPPQHHNGILLGYKIQVKAYNSTKILAQMSLNASTTSVL 162
AP + + TS V W+PP + + GY+I N ++++ S+TSV
Sbjct: 4 APTDLQVTNVTDTSITVSWTPP-----SATITGYRITYTPSNGPGEPKELTVPPSSTSVT 58
Query: 163 LNNLTSGAVYTARVVA 178
+ LT G Y V A
Sbjct: 59 ITGLTPGVEYVVSVYA 74
>pdb|3L5J|A Chain A, Crystal Structure Of Fniii Domains Of Human Gp130 (Domains
4
pdb|3L5J|B Chain B, Crystal Structure Of Fniii Domains Of Human Gp130 (Domains
4
Length = 288
Score = 30.4 bits (67), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 39/86 (45%), Gaps = 7/86 (8%)
Query: 100 PSAAPEAMSAGVLNLTSAFVKWSPPPPQHHNGILLGYKIQVKAY--NSTKILAQMSLNAS 157
PS P + V A ++W P NG + Y I + N T + ++++S
Sbjct: 197 PSKGPTVRTKKV-GKNEAVLEWDQLPVDVQNGFIRNYTIFYRTIIGNETAV----NVDSS 251
Query: 158 TTSVLLNNLTSGAVYTARVVAYTRAG 183
T L++LTS +Y R+ AYT G
Sbjct: 252 HTEYTLSSLTSDTLYMVRMAAYTDEG 277
>pdb|2DM4|A Chain A, Solution Structure Of The Second Fn3 Domain Of Human
SorlaLR11
Length = 108
Score = 30.4 bits (67), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 32/64 (50%), Gaps = 3/64 (4%)
Query: 125 PPQHHNGILLGYKIQVKAYNSTKILAQMSLNASTTSVLLNNLTSGAVYTARVVAYTRAGL 184
PP H +G++ Y ++ Y+ + S A++ + NL +YT RV A T G+
Sbjct: 32 PPIHTHGLIREYIVE---YSRSGSKMWASQRAASNFTEIKNLLVNTLYTVRVAAVTSRGI 88
Query: 185 GPYS 188
G +S
Sbjct: 89 GNWS 92
>pdb|3L5H|A Chain A, Crystal Structure Of The Full Ectodomain Of Human Gp130:
New Insights Into The Molecular Assembly Of Receptor
Complexes
Length = 589
Score = 30.4 bits (67), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 34/69 (49%), Gaps = 6/69 (8%)
Query: 117 AFVKWSPPPPQHHNGILLGYKIQVKAY--NSTKILAQMSLNASTTSVLLNNLTSGAVYTA 174
A ++W P NG + Y I + N T + ++++S T L++LTS +Y
Sbjct: 512 AVLEWDQLPVDVQNGFIRNYTIFYRTIIGNETAV----NVDSSHTEYTLSSLTSDTLYMV 567
Query: 175 RVVAYTRAG 183
R+ AYT G
Sbjct: 568 RMAAYTDEG 576
>pdb|3L5I|A Chain A, Crystal Structure Of Fniii Domains Of Human Gp130 (Domains
4-6)
Length = 290
Score = 29.6 bits (65), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 38/86 (44%), Gaps = 7/86 (8%)
Query: 100 PSAAPEAMSAGVLNLTSAFVKWSPPPPQHHNGILLGYKIQVKAY--NSTKILAQMSLNAS 157
PS P + V A ++W P NG + Y I + N T + ++++S
Sbjct: 197 PSKGPTVRTKKV-GKNEAVLEWDQLPVDVQNGFIRNYTIFYRTIIGNETAV----NVDSS 251
Query: 158 TTSVLLNNLTSGAVYTARVVAYTRAG 183
T L++LTS +Y R AYT G
Sbjct: 252 HTEYTLSSLTSDTLYXVRXAAYTDEG 277
>pdb|2EE2|A Chain A, Solution Structures Of The Fn3 Domain Of Human Contactin 1
Length = 119
Score = 29.3 bits (64), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 28/103 (27%), Positives = 45/103 (43%), Gaps = 7/103 (6%)
Query: 88 SNSMLVQSLEDVPSAAPEAMSAGVLNLTSAFVKWSPPPPQH-HNGILLGYKIQV-KAYNS 145
S ++ S +D PS AP + VL+ + V W +H I+ Y+I+ A++
Sbjct: 6 SGVAVINSAQDAPSEAPTEVGVKVLSSSEISVHW-----EHVLEKIVESYQIRYWAAHDK 60
Query: 146 TKILAQMSLNASTTSVLLNNLTSGAVYTARVVAYTRAGLGPYS 188
+ ++ + + S L NL Y V A AG GP S
Sbjct: 61 EEAANRVQVTSQEYSARLENLLPDTQYFIEVGACNSAGCGPPS 103
>pdb|1X5G|A Chain A, The Solution Structure Of The Second Fibronectin Type Iii
Domain Of Human Neogenin
Length = 116
Score = 28.1 bits (61), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 39/87 (44%), Gaps = 6/87 (6%)
Query: 99 VPSAAPEAMSAGVLNLTSAFVKWSPPPPQHHNGILLGYKIQVKAYNSTKILAQMSLNAST 158
+P AP + A + TS V W P NG + YK+ + K + ++ S+
Sbjct: 17 LPGPAPN-LRAYAASPTSITVTWETP--VSGNGEIQNYKLYYMEKGTDK---EQDVDVSS 70
Query: 159 TSVLLNNLTSGAVYTARVVAYTRAGLG 185
S +N L Y+ RVVAY + G G
Sbjct: 71 HSYTINGLKKYTEYSFRVVAYNKHGPG 97
>pdb|1X5F|A Chain A, The Solution Structure Of The First Fibronectin Type Iii
Domain Of Human Neogenin
Length = 120
Score = 28.1 bits (61), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 21/41 (51%)
Query: 161 VLLNNLTSGAVYTARVVAYTRAGLGPYSAPVTLVMDPHAPP 201
V + NL VY RV+A + G G SAP+ + P + P
Sbjct: 77 VTIQNLMPATVYIFRVMAQNKHGSGESSAPLRVETQPESGP 117
>pdb|1X4Z|A Chain A, Solution Structure Of The 2nd Fibronectin Type Iii Domain
From Mouse Biregional Cell Adhesion
Molecule-RelatedDOWN- Regulated Oncogenes (Cdon) Binding
Protein
Length = 121
Score = 28.1 bits (61), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 40/94 (42%), Gaps = 6/94 (6%)
Query: 100 PSAAPEAMSAGVLNLTSAFVKWSPPPPQHHNGILL-GYKIQVKAYNSTK--ILAQMSLNA 156
P AP+ + + TS +V W P+ + G + ++++ K ILA ++
Sbjct: 17 PPEAPDRPTISTASETSVYVTWI---PRGNGGFPIQSFRVEYKKLKKVGDWILATSAIPP 73
Query: 157 STTSVLLNNLTSGAVYTARVVAYTRAGLGPYSAP 190
S SV + L G Y RV A G SAP
Sbjct: 74 SRLSVEITGLEKGISYKFRVRALNMLGESEPSAP 107
>pdb|2YRZ|A Chain A, Solution Structure Of The Fibronectin Type Iii Domain Of
Human Integrin Beta-4
Length = 118
Score = 28.1 bits (61), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 35/83 (42%), Gaps = 3/83 (3%)
Query: 103 APEAMSAGVLNLTSAFVKWSPPPPQHHNGILLGYKIQVKAYNSTKILAQMSLNASTTSVL 162
P + L TS V W P + L GY ++ + N ++ N + TSV+
Sbjct: 20 TPTRLVFSALGPTSLRVSWQEPRCERP---LQGYSVEYQLLNGGELHRLNIPNPAQTSVV 76
Query: 163 LNNLTSGAVYTARVVAYTRAGLG 185
+ +L Y RV A ++ G G
Sbjct: 77 VEDLLPNHSYVFRVRAQSQEGWG 99
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.312 0.131 0.381
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,230,892
Number of Sequences: 62578
Number of extensions: 450892
Number of successful extensions: 642
Number of sequences better than 100.0: 40
Number of HSP's better than 100.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 20
Number of HSP's that attempted gapping in prelim test: 608
Number of HSP's gapped (non-prelim): 48
length of query: 308
length of database: 14,973,337
effective HSP length: 99
effective length of query: 209
effective length of database: 8,778,115
effective search space: 1834626035
effective search space used: 1834626035
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 51 (24.3 bits)