Query         psy15129
Match_columns 308
No_of_seqs    350 out of 2414
Neff          8.6 
Searched_HMMs 46136
Date          Fri Aug 16 21:18:38 2013
Command       hhsearch -i /work/01045/syshi/Psyhhblits/psy15129.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/15129hhsearch_cdd -cpu 12 -v 0 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 KOG4221|consensus               99.9 5.2E-25 1.1E-29  219.1  20.9  230   11-250   536-804 (1381)
  2 KOG3513|consensus               99.9 8.4E-24 1.8E-28  211.1  22.7  236   13-255   632-911 (1051)
  3 KOG4221|consensus               99.9   6E-21 1.3E-25  190.4  21.5  228   14-258   446-711 (1381)
  4 KOG3513|consensus               99.8   1E-19 2.2E-24  182.1  22.3  191   26-222   749-947 (1051)
  5 KOG0196|consensus               99.6 5.6E-15 1.2E-19  143.3  15.9  137   52-198   397-537 (996)
  6 KOG0196|consensus               99.5 1.9E-13 4.2E-18  132.8  15.8  159  100-260   331-537 (996)
  7 KOG4222|consensus               99.5 3.4E-13 7.4E-18  135.0  12.1  177   14-196   660-844 (1281)
  8 PF00041 fn3:  Fibronectin type  99.4 1.1E-12 2.4E-17   95.9  10.0   84  103-188     2-85  (85)
  9 KOG4222|consensus               98.9 1.4E-08   3E-13  102.6  11.8  231   13-252   544-838 (1281)
 10 cd00063 FN3 Fibronectin type 3  98.8 7.5E-08 1.6E-12   69.8  11.8   86  103-191     3-89  (93)
 11 KOG4802|consensus               98.7   4E-07 8.6E-12   83.1  12.5  141   38-190   193-346 (516)
 12 smart00060 FN3 Fibronectin typ  98.4 8.7E-06 1.9E-10   57.0  12.0   77  104-184     4-82  (83)
 13 KOG4258|consensus               98.3 1.1E-06 2.4E-11   86.8   6.0  133   50-192   779-919 (1025)
 14 PF00041 fn3:  Fibronectin type  98.3 1.1E-06 2.4E-11   63.6   4.6   74    8-88     12-85  (85)
 15 PF09294 Interfer-bind:  Interf  97.7  0.0002 4.3E-09   54.6   8.1   89  103-195     5-105 (106)
 16 KOG4367|consensus               97.7 6.1E-05 1.3E-09   69.4   5.8   95   97-197   435-531 (699)
 17 KOG4258|consensus               97.5  0.0003 6.5E-09   70.1   8.4   81   54-143   567-651 (1025)
 18 KOG4152|consensus               97.5 0.00086 1.9E-08   63.6  10.2  121   68-191   656-792 (830)
 19 KOG4802|consensus               97.1   0.011 2.3E-07   54.8  12.3   72  149-220   199-279 (516)
 20 PF10179 DUF2369:  Uncharacteri  97.0   0.056 1.2E-06   48.8  16.3  162   49-220    11-199 (300)
 21 KOG3632|consensus               97.0   0.001 2.3E-08   67.1   5.7  156   69-238   642-812 (1335)
 22 PF10179 DUF2369:  Uncharacteri  96.9   0.046 9.9E-07   49.4  14.7  130   54-196   129-297 (300)
 23 PF01108 Tissue_fac:  Tissue fa  96.9  0.0096 2.1E-07   45.5   8.9   77  101-182    22-102 (107)
 24 cd00063 FN3 Fibronectin type 3  96.8  0.0052 1.1E-07   43.7   6.6   72   12-92     17-90  (93)
 25 KOG4152|consensus               96.5  0.0036 7.8E-08   59.5   5.1   63  164-227   652-718 (830)
 26 COG4733 Phage-related protein,  95.6     0.1 2.3E-06   52.6  10.2  165    7-187   617-785 (952)
 27 smart00060 FN3 Fibronectin typ  95.2   0.076 1.6E-06   36.3   6.1   66   11-84     16-82  (83)
 28 KOG4367|consensus               94.7   0.016 3.5E-07   53.9   1.6   76   13-97    456-531 (699)
 29 KOG3632|consensus               92.9    0.67 1.4E-05   47.8   9.4  123   55-186   720-857 (1335)
 30 PLN02533 probable purple acid   92.2     2.2 4.7E-05   41.0  11.7   85  101-198    41-136 (427)
 31 COG3401 Fibronectin type 3 dom  91.6     1.6 3.4E-05   39.9   9.3  179   24-220     3-188 (343)
 32 COG3401 Fibronectin type 3 dom  91.6     3.6 7.9E-05   37.6  11.6  145   68-223   133-282 (343)
 33 PF09067 EpoR_lig-bind:  Erythr  91.6     1.2 2.6E-05   33.9   7.4   79  101-184     8-95  (104)
 34 PF07495 Y_Y_Y:  Y_Y_Y domain;   90.5     1.5 3.3E-05   29.7   6.6   27  160-187    30-56  (66)
 35 KOG4228|consensus               85.7    0.87 1.9E-05   47.7   3.9   97   77-220    91-187 (1087)
 36 PF09294 Interfer-bind:  Interf  81.8     2.1 4.5E-05   32.1   3.8   58   29-95     46-105 (106)
 37 KOG4228|consensus               74.9       5 0.00011   42.3   5.1  137   73-220   141-278 (1087)
 38 PF14292 SusE:  SusE outer memb  74.3      38 0.00082   26.1   9.3   70  107-178    37-120 (122)
 39 PF09240 IL6Ra-bind:  Interleuk  73.8      33 0.00073   25.3  10.6   80  104-186     2-88  (99)
 40 PF07495 Y_Y_Y:  Y_Y_Y domain;   73.1      15 0.00032   24.7   5.7   36   42-85     19-54  (66)
 41 TIGR00868 hCaCC calcium-activa  72.4      15 0.00032   38.5   7.8   79  105-184   760-854 (863)
 42 KOG1225|consensus               70.8     9.1  0.0002   37.6   5.6  109   50-176   415-524 (525)
 43 KOG4806|consensus               66.6      25 0.00054   32.6   7.0  118   71-195   296-446 (454)
 44 KOG4806|consensus               60.5 1.5E+02  0.0032   27.7  11.4   55  165-220   290-352 (454)
 45 PF01108 Tissue_fac:  Tissue fa  58.7      18 0.00038   27.2   4.2   68   11-86     36-106 (107)
 46 PF13754 Big_3_4:  Bacterial Ig  55.3      49  0.0011   21.6   5.3   33  161-194    16-48  (54)
 47 KOG1948|consensus               55.0   1E+02  0.0023   32.2   9.7   23  158-180   945-967 (1165)
 48 KOG1948|consensus               46.0 3.9E+02  0.0084   28.3  14.3  114   52-179   945-1063(1165)
 49 KOG1225|consensus               45.1      25 0.00054   34.6   3.7  110  106-223   371-481 (525)
 50 KOG3515|consensus               43.9   2E+02  0.0044   29.7   9.9   62  163-224   658-719 (741)
 51 PF09423 PhoD:  PhoD-like phosp  41.4      38 0.00081   32.7   4.4   49  159-210    64-113 (453)
 52 KOG0613|consensus               36.5      86  0.0019   34.0   6.2  121   69-190   301-424 (1205)
 53 PF11344 DUF3146:  Protein of u  35.7      28  0.0006   24.7   1.8   14  165-178    66-79  (80)
 54 COG4733 Phage-related protein,  33.0   1E+02  0.0022   32.1   5.9   32  154-186   655-686 (952)
 55 PF08329 ChitinaseA_N:  Chitina  30.8 2.7E+02  0.0059   22.1   8.1   72  112-194    35-106 (133)
 56 PHA02579 7 baseplate wedge sub  29.7 1.5E+02  0.0032   30.7   6.3   73  104-184     8-89  (1030)
 57 PF07353 Uroplakin_II:  Uroplak  29.0      99  0.0021   25.4   4.1   25  157-181   100-124 (184)
 58 KOG1378|consensus               27.2 5.9E+02   0.013   24.7  11.5   36  157-197   107-142 (452)
 59 KOG3834|consensus               26.6 1.3E+02  0.0028   28.8   5.0   69  106-176    67-137 (462)
 60 PF11811 DUF3331:  Domain of un  24.9 1.5E+02  0.0033   22.1   4.2   21  104-124    15-36  (96)
 61 cd05762 Ig8_MLCK Eighth immuno  21.4 2.8E+02  0.0061   20.1   5.3   43  158-200    55-97  (98)
 62 KOG0613|consensus               21.1 3.9E+02  0.0085   29.3   7.8   81  100-187   139-219 (1205)
 63 KOG3515|consensus               20.3 1.5E+02  0.0033   30.6   4.5   71   68-145   663-733 (741)

No 1  
>KOG4221|consensus
Probab=99.93  E-value=5.2e-25  Score=219.09  Aligned_cols=230  Identities=23%  Similarity=0.266  Sum_probs=184.3

Q ss_pred             ccccccccCCCCCCCcceeEEeeeeeccCCCCeeEeCCCCcccceEecCcccCccCCCCeEEEEEEEEEECcccCCCCCc
Q psy15129         11 EDSRNYEDGRGNYEDSRGNYEDGRGKYEDGRNKYEDGRSKYEDNRSCSGMRMGEINTKMGEVNTRIIEVVVGVIRQPSNS   90 (308)
Q Consensus        11 ~~~~~~~~~~~~~~~i~gy~i~wr~~~~~~~~~~~~~~~~~~~~~~~~~L~pg~~~~p~T~Y~~~V~a~n~~G~g~~S~~   90 (308)
                      .--+.|+.+.-+...|.+|++-+...   ....++. .+.....+.++||.+      +|+|.|+|.|+|..|.|..|..
T Consensus       536 ti~v~WepP~~~n~~I~~yk~~ys~~---~~~~~~~-~~~n~~e~ti~gL~k------~TeY~~~vvA~N~~G~g~sS~~  605 (1381)
T KOG4221|consen  536 TILVTWEPPPFGNGPITGYKLFYSED---DTGKELR-VENNATEYTINGLEK------YTEYSIRVVAYNSAGSGVSSAD  605 (1381)
T ss_pred             eEEEEecCCCCCCCCceEEEEEEEcC---CCCceEE-EecCccEEEeecCCC------ccceEEEEEEecCCCCCCCCCc
Confidence            34468999997778899999998754   1112222 334556778889988      9999999999999999999999


Q ss_pred             EEEeccCCCCCCCCcceEEEEecCcEEEEEEeCCCCCCCCceeeEEEEEEEEcCCCceEEEEEecCcccEEEEccCCCCC
Q psy15129         91 MLVQSLEDVPSAAPEAMSAGVLNLTSAFVKWSPPPPQHHNGILLGYKIQVKAYNSTKILAQMSLNASTTSVLLNNLTSGA  170 (308)
Q Consensus        91 v~~~T~~~~P~~~P~~l~v~~~~~tsv~VsW~pP~~~~~~g~I~~Y~V~~~~~~~~~~~~~~~~~~~~t~~~l~~L~p~t  170 (308)
                      +.+.|..+.|++||.||++...++++|+|+|.+|+....||.|.+|.|+|+.........+..+.++.+.+.+.+|+|++
T Consensus       606 i~V~Tlsd~PsaPP~Nl~lev~sStsVrVsW~pP~~~t~ng~itgYkIRy~~~~~~~~~~~t~v~~n~~~~l~~~Lep~T  685 (1381)
T KOG4221|consen  606 ITVRTLSDVPSAPPQNLSLEVVSSTSVRVSWLPPPSETQNGQITGYKIRYRKLSREDEVNETVVKGNTTQYLFNGLEPNT  685 (1381)
T ss_pred             eEEEeccCCCCCCCcceEEEecCCCeEEEEccCCCcccccceEEEEEEEecccCcccccceeecccchhhhHhhcCCCCc
Confidence            99999999999999999999999999999999999999999999999999976555444555667788999999999999


Q ss_pred             eEEEEEEEEeCCCCCCCCccEEEeeCCCC-----CCCcc--ceeeecCEEEEEecCCCcCC-------------------
Q psy15129        171 VYTARVVAYTRAGLGPYSAPVTLVMDPHA-----PPHAL--PSDILITHLVLIHSPIQVPG-------------------  224 (308)
Q Consensus       171 ~Y~v~V~A~n~~G~G~~S~~v~~~T~p~~-----P~~~~--~~~~~~tsv~vsW~pP~~~~-------------------  224 (308)
                      .|.|+|.|.|..|.|++|+++.+.|....     |....  ......++|.|+|.||..+.                   
T Consensus       686 ~Y~vrIsa~t~nGtGpaS~w~~aeT~~~d~~e~vp~~ps~l~~~~g~~si~vsW~Pp~~~~~~vrgY~ig~r~g~~~p~~  765 (1381)
T KOG4221|consen  686 QYRVRISAMTVNGTGPASEWVSAETPESDLDERVPGKPSELHVHPGSNSIVVSWTPPPHPNIVVRGYKIGYRPGSGIPDT  765 (1381)
T ss_pred             eEEEEEEEeccCCCCCcccceeccCccccccccCCCCCceeeeccCceeEEEEeCCCCChhhhhcceEEeeecccCCCCC
Confidence            99999999999999999999999887322     22222  12234679999999995441                   


Q ss_pred             -------CCCe-eecCC-CCcEE----EeccCCCCccCC
Q psy15129        225 -------SDRS-TQSSL-PHNQY----HSGTRQDWINED  250 (308)
Q Consensus       225 -------~~~~-~vt~L-p~~~Y----~a~t~~g~g~~s  250 (308)
                             ..+. .+..| |...|    +|-+..|||...
T Consensus       766 ~tIrl~~~~s~y~l~~Le~~~~YvVkL~AfNn~gdG~p~  804 (1381)
T KOG4221|consen  766 GTIRLDEKVSYYNLEQLEPNRDYVVKLRAFNNHGDGNPI  804 (1381)
T ss_pred             ccEEecceeeEEEEEecccCceEEEEEEEeccCCCCcce
Confidence                   1222 67777 88888    677788887654


No 2  
>KOG3513|consensus
Probab=99.92  E-value=8.4e-24  Score=211.12  Aligned_cols=236  Identities=18%  Similarity=0.206  Sum_probs=186.7

Q ss_pred             ccccccCCCCCCCcceeEEeeeeeccCCCCeeEeCCCCccc---ceEecCcccCccCCCCeEEEEEEEEEECcccCCCCC
Q psy15129         13 SRNYEDGRGNYEDSRGNYEDGRGKYEDGRNKYEDGRSKYED---NRSCSGMRMGEINTKMGEVNTRIIEVVVGVIRQPSN   89 (308)
Q Consensus        13 ~~~~~~~~~~~~~i~gy~i~wr~~~~~~~~~~~~~~~~~~~---~~~~~~L~pg~~~~p~T~Y~~~V~a~n~~G~g~~S~   89 (308)
                      -|.|+.+.+|-+.|..|.|+.|.+ ..+.+..+........   ...+-+|.|      |.+|+|||+|.|..|.|.+|.
T Consensus       632 ~lsW~~g~dn~SpI~~Y~iq~rt~-~~~~W~~v~~vp~~~~~~~sa~vv~L~P------wv~YeFRV~AvN~iG~gePS~  704 (1051)
T KOG3513|consen  632 RLSWSPGSDNNSPIEKYTIQFRTP-FPGKWKAVTTVPGNITGDESATVVNLSP------WVEYEFRVVAVNSIGIGEPSP  704 (1051)
T ss_pred             EEEeecCCCCCCCceEEeEEecCC-CCCcceEeeECCCcccCccceeEEccCC------CcceEEEEEEEcccccCCCCC
Confidence            478999999977799999999977 3333333332222212   344555776      999999999999999998886


Q ss_pred             c-EEEeccCCCCCCCCcceEEEEecCcEEEEEEeCCCCCCCCceeeEEEEEEEEcCCCceEEEEEe-cCcccEEEEc--c
Q psy15129         90 S-MLVQSLEDVPSAAPEAMSAGVLNLTSAFVKWSPPPPQHHNGILLGYKIQVKAYNSTKILAQMSL-NASTTSVLLN--N  165 (308)
Q Consensus        90 ~-v~~~T~~~~P~~~P~~l~v~~~~~tsv~VsW~pP~~~~~~g~I~~Y~V~~~~~~~~~~~~~~~~-~~~~t~~~l~--~  165 (308)
                      + ..++|.+++|...|.+|.......+.+.|+|+|.+....||+-.+|+|.|++.+....|....+ ......+++.  .
T Consensus       705 pS~~~rT~ea~P~~~P~nv~g~g~~~~eLvItW~Pl~~~~qNG~gfgY~Vswr~~g~~~~W~~~~v~~~d~~~~V~~~~s  784 (1051)
T KOG3513|consen  705 PSEKVRTPEAAPSVNPSNVKGGGGSPTELVITWEPLPEEEQNGPGFGYRVSWRPQGADKEWKEVIVSNQDQPRYVVSNES  784 (1051)
T ss_pred             CccceecCCCCCccCCccccccCCCCceEEEEeccCCHHHccCCCceEEEEEEeCCCCcccceeEecccCCceEEEcCCC
Confidence            5 4589999999999999999999999999999999888899999999999999877645554444 3344455554  4


Q ss_pred             CCCCCeEEEEEEEEeCCCCCCCCccEEEeeCCCC----CCCccceeeecCEEEEEecCCCcC------------------
Q psy15129        166 LTSGAVYTARVVAYTRAGLGPYSAPVTLVMDPHA----PPHALPSDILITHLVLIHSPIQVP------------------  223 (308)
Q Consensus       166 L~p~t~Y~v~V~A~n~~G~G~~S~~v~~~T~p~~----P~~~~~~~~~~tsv~vsW~pP~~~------------------  223 (308)
                      ..|.+.|.|+|+|+|..|.|+.|..+.+.+.++.    |+.+.+..++.+.+.|+|++|...                  
T Consensus       785 t~~~tpyevKVqa~N~~GeGp~s~~~v~~S~Ed~P~~ap~~~~~~~~s~s~~~v~W~~~~~~nG~l~gY~v~Y~~~~~~~  864 (1051)
T KOG3513|consen  785 TEPFTPYEVKVQAINDQGEGPESQVTVGYSGEDEPPVAPTKLSAKPLSSSEVNLSWKPPLWDNGKLTGYEVKYWKINEKE  864 (1051)
T ss_pred             CCCcceeEEEEEEecCCCCCCCCceEEEEcCCCCCCCCCccceeecccCceEEEEecCcCccCCccceeEEEEEEcCCCc
Confidence            6779999999999999999999999988887554    556677888899999999988222                  


Q ss_pred             ---------CCCCe-eecCC-CCcEE----EeccCCCCccCCccEEE
Q psy15129        224 ---------GSDRS-TQSSL-PHNQY----HSGTRQDWINEDARMRY  255 (308)
Q Consensus       224 ---------~~~~~-~vt~L-p~~~Y----~a~t~~g~g~~s~~~~~  255 (308)
                               ++... .+++| |.+.|    +|.|.+|.|+.+.+...
T Consensus       865 ~~~~~~~i~~~~~~~~ltgL~~~T~Y~~~vrA~nsaG~Gp~s~~~~~  911 (1051)
T KOG3513|consen  865 GSLSRVQIAGNRTSWRLTGLEPNTKYRFYVRAYTSAGGGPASSEENV  911 (1051)
T ss_pred             ccccceeecCCcceEeeeCCCCCceEEEEEEEecCCCCCCCccceec
Confidence                     22233 89999 99999    79999999998876544


No 3  
>KOG4221|consensus
Probab=99.87  E-value=6e-21  Score=190.39  Aligned_cols=228  Identities=19%  Similarity=0.193  Sum_probs=174.7

Q ss_pred             cccccCCCCCCCcceeEEeeeeeccCCCCeeEeCCCCcccceEecCcccCccCCCCeEEEEEEEEEECcccCCCCCcEEE
Q psy15129         14 RNYEDGRGNYEDSRGNYEDGRGKYEDGRNKYEDGRSKYEDNRSCSGMRMGEINTKMGEVNTRIIEVVVGVIRQPSNSMLV   93 (308)
Q Consensus        14 ~~~~~~~~~~~~i~gy~i~wr~~~~~~~~~~~~~~~~~~~~~~~~~L~pg~~~~p~T~Y~~~V~a~n~~G~g~~S~~v~~   93 (308)
                      +.|.-++.....|.-|.+.+........... ...... ...++.+|+|      -+.|.|+|.|.|..|.|..|.++.+
T Consensus       446 ~tw~~p~~~~g~i~~~~v~~~~~~~~rer~~-~tss~g-~~~tv~nl~p------~t~Y~~rv~A~n~~g~g~sS~pLkV  517 (1381)
T KOG4221|consen  446 LTWRPPAQISGNISTYTVFYKVEGDVRERLQ-NTSSPG-IQVTVQNLSP------LTMYFFRVRAKNEAGSGESSAPLKV  517 (1381)
T ss_pred             EeecCccccCCCcceEEEEEecCCchhhhhe-eccCCc-eEEEeeeccc------ceeEEEEEeccCcccCCccCCceEE
Confidence            4566556666666666666543222221111 112222 5556677888      6799999999999999999999999


Q ss_pred             eccCCCCCCCCcceEEEEecCcEEEEEEeCCCCCCCCceeeEEEEEEEEcCCCceEEEEEecCcccEEEEccCCCCCeEE
Q psy15129         94 QSLEDVPSAAPEAMSAGVLNLTSAFVKWSPPPPQHHNGILLGYKIQVKAYNSTKILAQMSLNASTTSVLLNNLTSGAVYT  173 (308)
Q Consensus        94 ~T~~~~P~~~P~~l~v~~~~~tsv~VsW~pP~~~~~~g~I~~Y~V~~~~~~~~~~~~~~~~~~~~t~~~l~~L~p~t~Y~  173 (308)
                      .|...   + |..+.+...+..++.|.|++|  ...|++|++|++.|...+..   ....+..+.+.++|.+|.|.|.|.
T Consensus       518 ~t~pE---g-p~~~~a~ats~~ti~v~WepP--~~~n~~I~~yk~~ys~~~~~---~~~~~~~n~~e~ti~gL~k~TeY~  588 (1381)
T KOG4221|consen  518 TTQPE---G-PVQLQAYATSPTTILVTWEPP--PFGNGPITGYKLFYSEDDTG---KELRVENNATEYTINGLEKYTEYS  588 (1381)
T ss_pred             ecCCC---C-CccccccccCcceEEEEecCC--CCCCCCceEEEEEEEcCCCC---ceEEEecCccEEEeecCCCccceE
Confidence            88755   3 334888899999999999999  77899999999999975322   345667888999999999999999


Q ss_pred             EEEEEEeCCCCCCCCccEEEeeC---CCCCCC-ccceeeecCEEEEEecCCCc---------------------------
Q psy15129        174 ARVVAYTRAGLGPYSAPVTLVMD---PHAPPH-ALPSDILITHLVLIHSPIQV---------------------------  222 (308)
Q Consensus       174 v~V~A~n~~G~G~~S~~v~~~T~---p~~P~~-~~~~~~~~tsv~vsW~pP~~---------------------------  222 (308)
                      |+|.|+|++|.|..|..+.+.|.   |++|++ +.+...++++|.|+|.+|..                           
T Consensus       589 ~~vvA~N~~G~g~sS~~i~V~Tlsd~PsaPP~Nl~lev~sStsVrVsW~pP~~~t~ng~itgYkIRy~~~~~~~~~~~t~  668 (1381)
T KOG4221|consen  589 IRVVAYNSAGSGVSSADITVRTLSDVPSAPPQNLSLEVVSSTSVRVSWLPPPSETQNGQITGYKIRYRKLSREDEVNETV  668 (1381)
T ss_pred             EEEEEecCCCCCCCCCceEEEeccCCCCCCCcceEEEecCCCeEEEEccCCCcccccceEEEEEEEecccCcccccceee
Confidence            99999999999999999999887   555554 88888899999999999911                           


Q ss_pred             -CCCCCe-eecCC-CCcEE----EeccCCCCccCCccEEEEec
Q psy15129        223 -PGSDRS-TQSSL-PHNQY----HSGTRQDWINEDARMRYEES  258 (308)
Q Consensus       223 -~~~~~~-~vt~L-p~~~Y----~a~t~~g~g~~s~~~~~~~~  258 (308)
                       .++... .+.+| |.+.|    .|.|..|.|++++-+++++.
T Consensus       669 v~~n~~~~l~~~Lep~T~Y~vrIsa~t~nGtGpaS~w~~aeT~  711 (1381)
T KOG4221|consen  669 VKGNTTQYLFNGLEPNTQYRVRISAMTVNGTGPASEWVSAETP  711 (1381)
T ss_pred             cccchhhhHhhcCCCCceEEEEEEEeccCCCCCcccceeccCc
Confidence             112223 67789 99999    58999999999987776554


No 4  
>KOG3513|consensus
Probab=99.85  E-value=1e-19  Score=182.14  Aligned_cols=191  Identities=22%  Similarity=0.228  Sum_probs=150.6

Q ss_pred             cceeEEeeeeeccCCCCeeEeCCCCcccceEecCcccCccCCCCeEEEEEEEEEECcccCCCCCcEEEeccCCCCCCCCc
Q psy15129         26 SRGNYEDGRGKYEDGRNKYEDGRSKYEDNRSCSGMRMGEINTKMGEVNTRIIEVVVGVIRQPSNSMLVQSLEDVPSAAPE  105 (308)
Q Consensus        26 i~gy~i~wr~~~~~~~~~~~~~~~~~~~~~~~~~L~pg~~~~p~T~Y~~~V~a~n~~G~g~~S~~v~~~T~~~~P~~~P~  105 (308)
                      =-||+|.||+...+..+............+++. ..+   -.||+.|++.|+|+|+.|.|+.|..+.+.+.|+.|..+|.
T Consensus       749 gfgY~Vswr~~g~~~~W~~~~v~~~d~~~~V~~-~~s---t~~~tpyevKVqa~N~~GeGp~s~~~v~~S~Ed~P~~ap~  824 (1051)
T KOG3513|consen  749 GFGYRVSWRPQGADKEWKEVIVSNQDQPRYVVS-NES---TEPFTPYEVKVQAINDQGEGPESQVTVGYSGEDEPPVAPT  824 (1051)
T ss_pred             CceEEEEEEeCCCCcccceeEecccCCceEEEc-CCC---CCCcceeEEEEEEecCCCCCCCCceEEEEcCCCCCCCCCc
Confidence            468999999765443222222223223344444 222   2369999999999999999999999999999999999999


Q ss_pred             ceEEEEecCcEEEEEEeCCCCCCCCceeeEEEEEEEEcCCC-ceEEEEEecCcccEEEEccCCCCCeEEEEEEEEeCCCC
Q psy15129        106 AMSAGVLNLTSAFVKWSPPPPQHHNGILLGYKIQVKAYNST-KILAQMSLNASTTSVLLNNLTSGAVYTARVVAYTRAGL  184 (308)
Q Consensus       106 ~l~v~~~~~tsv~VsW~pP~~~~~~g~I~~Y~V~~~~~~~~-~~~~~~~~~~~~t~~~l~~L~p~t~Y~v~V~A~n~~G~  184 (308)
                      .+.+...+.+.+.|+|++|  ...||.+++|.|.|+..+.. .......+.++.++..|.||+|.|.|.|.|+|+|++|.
T Consensus       825 ~~~~~~~s~s~~~v~W~~~--~~~nG~l~gY~v~Y~~~~~~~~~~~~~~i~~~~~~~~ltgL~~~T~Y~~~vrA~nsaG~  902 (1051)
T KOG3513|consen  825 KLSAKPLSSSEVNLSWKPP--LWDNGKLTGYEVKYWKINEKEGSLSRVQIAGNRTSWRLTGLEPNTKYRFYVRAYTSAGG  902 (1051)
T ss_pred             cceeecccCceEEEEecCc--CccCCccceeEEEEEEcCCCcccccceeecCCcceEeeeCCCCCceEEEEEEEecCCCC
Confidence            9999999999999999999  56679999999999987554 22333456789999999999999999999999999999


Q ss_pred             CCCCccEEEeeCCCCCCC-------ccceeeecCEEEEEecCCCc
Q psy15129        185 GPYSAPVTLVMDPHAPPH-------ALPSDILITHLVLIHSPIQV  222 (308)
Q Consensus       185 G~~S~~v~~~T~p~~P~~-------~~~~~~~~tsv~vsW~pP~~  222 (308)
                      ||.|.....+|.+.+|..       ..+-......+.+.|.....
T Consensus       903 Gp~s~~~~~tt~k~pPs~~~~~p~g~~~~~~~~~~~~l~w~~v~~  947 (1051)
T KOG3513|consen  903 GPASSEENVTTKKAPPSQVDIAPPGNFIWKFSASILLLLWLLVSA  947 (1051)
T ss_pred             CCCccceeccccCCCCcccccCCCcceEEeeeeeEEEEEEeeEEE
Confidence            999999988888766654       23444557789999987643


No 5  
>KOG0196|consensus
Probab=99.63  E-value=5.6e-15  Score=143.32  Aligned_cols=137  Identities=23%  Similarity=0.316  Sum_probs=115.1

Q ss_pred             ccceEecCcccCccCCCCeEEEEEEEEEECccc-C---CCCCcEEEeccCCCCCCCCcceEEEEecCcEEEEEEeCCCCC
Q psy15129         52 EDNRSCSGMRMGEINTKMGEVNTRIIEVVVGVI-R---QPSNSMLVQSLEDVPSAAPEAMSAGVLNLTSAFVKWSPPPPQ  127 (308)
Q Consensus        52 ~~~~~~~~L~pg~~~~p~T~Y~~~V~a~n~~G~-g---~~S~~v~~~T~~~~P~~~P~~l~v~~~~~tsv~VsW~pP~~~  127 (308)
                      ++...+++|.+      +++|+|.|.|+|+... +   +....+.++|.+.+|+.. ..++....+.+++.|+|..|  +
T Consensus       397 ~~~V~v~~L~a------h~~YTFeV~AvNgVS~lsp~~~~~a~vnItt~qa~ps~V-~~~r~~~~~~~sitlsW~~p--~  467 (996)
T KOG0196|consen  397 ETSVTVSDLLA------HTNYTFEVEAVNGVSDLSPFPRQFASVNITTNQAAPSPV-SVLRQVSRTSDSITLSWSEP--D  467 (996)
T ss_pred             cceEEEecccc------ccccEEEEEEeecccccCCCCCcceeEEeeccccCCCcc-ceEEEeeeccCceEEecCCC--C
Confidence            34566777877      9999999999997653 2   223468899999888774 48899999999999999999  8


Q ss_pred             CCCceeeEEEEEEEEcCCCceEEEEEecCcccEEEEccCCCCCeEEEEEEEEeCCCCCCCCccEEEeeCCC
Q psy15129        128 HHNGILLGYKIQVKAYNSTKILAQMSLNASTTSVLLNNLTSGAVYTARVVAYTRAGLGPYSAPVTLVMDPH  198 (308)
Q Consensus       128 ~~~g~I~~Y~V~~~~~~~~~~~~~~~~~~~~t~~~l~~L~p~t~Y~v~V~A~n~~G~G~~S~~v~~~T~p~  198 (308)
                      .++|.|..|+|+|.+..... .....+....+..+|.+|+|++.|.|+|+|.+.+|.|++|....++|.++
T Consensus       468 ~png~ildYEvky~ek~~~e-~~~~~~~t~~~~~ti~gL~p~t~YvfqVRarT~aG~G~~S~~~~fqT~~~  537 (996)
T KOG0196|consen  468 QPNGVILDYEVKYYEKDEDE-RSYSTLKTKTTTATITGLKPGTVYVFQVRARTAAGYGPYSGKHEFQTLPS  537 (996)
T ss_pred             CCCCcceeEEEEEeeccccc-cceeEEecccceEEeeccCCCcEEEEEEEEecccCCCCCCCceeeeecCc
Confidence            89999999999999865432 33446677888999999999999999999999999999999999999876


No 6  
>KOG0196|consensus
Probab=99.53  E-value=1.9e-13  Score=132.83  Aligned_cols=159  Identities=21%  Similarity=0.280  Sum_probs=118.7

Q ss_pred             CCCCCcceEEEEecCcEEEEEEeCCCCCCCCceeeEEEEEEEEcCCCce----------EEEEEecCcccEEEEccCCCC
Q psy15129        100 PSAAPEAMSAGVLNLTSAFVKWSPPPPQHHNGILLGYKIQVKAYNSTKI----------LAQMSLNASTTSVLLNNLTSG  169 (308)
Q Consensus       100 P~~~P~~l~v~~~~~tsv~VsW~pP~~~~~~g~I~~Y~V~~~~~~~~~~----------~~~~~~~~~~t~~~l~~L~p~  169 (308)
                      |+.+|++|.. .++.+++.|.|.+|........| .|.|.|+.......          .......-.++.+.+.+|.|.
T Consensus       331 PPSaP~nlis-~vn~Ts~~L~W~~P~d~GGR~Di-~y~v~Ck~c~~~~~~C~~Cg~~V~f~P~q~gLt~~~V~v~~L~ah  408 (996)
T KOG0196|consen  331 PPSAPRNLIS-NVNGTSLILEWSPPADTGGREDI-TYNVICKKCGGGRGACEPCGDNVRFTPRQRGLTETSVTVSDLLAH  408 (996)
T ss_pred             CCCccceeee-ecccceEEEEecCCcccCCCcce-EEEEEeeccCCCCCccccCCCCceECCCCCCcccceEEEeccccc
Confidence            4556889865 59999999999999433333344 78888876542211          111122346788999999999


Q ss_pred             CeEEEEEEEEeCCCC-CC---CCccEEEeeCCCCCCC---ccceeeecCEEEEEecCCCcCCC-----------------
Q psy15129        170 AVYTARVVAYTRAGL-GP---YSAPVTLVMDPHAPPH---ALPSDILITHLVLIHSPIQVPGS-----------------  225 (308)
Q Consensus       170 t~Y~v~V~A~n~~G~-G~---~S~~v~~~T~p~~P~~---~~~~~~~~tsv~vsW~pP~~~~~-----------------  225 (308)
                      +.|+|.|.|.|.... ++   ....+.++|...+|+.   ++....+.++|.|+|..|..+..                 
T Consensus       409 ~~YTFeV~AvNgVS~lsp~~~~~a~vnItt~qa~ps~V~~~r~~~~~~~sitlsW~~p~~png~ildYEvky~ek~~~e~  488 (996)
T KOG0196|consen  409 TNYTFEVEAVNGVSDLSPFPRQFASVNITTNQAAPSPVSVLRQVSRTSDSITLSWSEPDQPNGVILDYEVKYYEKDEDER  488 (996)
T ss_pred             cccEEEEEEeecccccCCCCCcceeEEeeccccCCCccceEEEeeeccCceEEecCCCCCCCCcceeEEEEEeecccccc
Confidence            999999999998753 22   2456788888777765   55666778999999999854431                 


Q ss_pred             --------CCe-eecCC-CCcEE----EeccCCCCccCCccEEEEeccc
Q psy15129        226 --------DRS-TQSSL-PHNQY----HSGTRQDWINEDARMRYEESRG  260 (308)
Q Consensus       226 --------~~~-~vt~L-p~~~Y----~a~t~~g~g~~s~~~~~~~~~~  260 (308)
                              ... ++++| |+++|    +|.|..|.|.++..++|+++.-
T Consensus       489 ~~~~~~t~~~~~ti~gL~p~t~YvfqVRarT~aG~G~~S~~~~fqT~~~  537 (996)
T KOG0196|consen  489 SYSTLKTKTTTATITGLKPGTVYVFQVRARTAAGYGPYSGKHEFQTLPS  537 (996)
T ss_pred             ceeEEecccceEEeeccCCCcEEEEEEEEecccCCCCCCCceeeeecCc
Confidence                    112 89999 99999    8999999999999999999875


No 7  
>KOG4222|consensus
Probab=99.47  E-value=3.4e-13  Score=134.97  Aligned_cols=177  Identities=28%  Similarity=0.353  Sum_probs=142.5

Q ss_pred             cccccCCC-CCCCcceeEEeeeeecc-CCCCeeEeCCCCcccceEecCcccCccCCCCeEEEEEEEEEECcc---cCCCC
Q psy15129         14 RNYEDGRG-NYEDSRGNYEDGRGKYE-DGRNKYEDGRSKYEDNRSCSGMRMGEINTKMGEVNTRIIEVVVGV---IRQPS   88 (308)
Q Consensus        14 ~~~~~~~~-~~~~i~gy~i~wr~~~~-~~~~~~~~~~~~~~~~~~~~~L~pg~~~~p~T~Y~~~V~a~n~~G---~g~~S   88 (308)
                      +-|...+. ....|+||+|.||.... ...+....+.+....+..+.+|+|      +|.|+|.+..+...|   .|.++
T Consensus       660 ~~w~~~kq~~~~~i~g~~I~~r~~~~~~a~~s~~~v~~~t~~s~v~~nl~p------~t~ye~f~~Pf~~~~~s~~g~pS  733 (1281)
T KOG4222|consen  660 LGWTKDKQHGSQYIQGYRISYRSLGSQLAQWSNAGVTVPTPESVVVPNLKP------GTNYEFFVRPFFPHGYSIQGAPS  733 (1281)
T ss_pred             eeeeeecccCcccccceEEEeccCccccccccccceeccCCcceeccccCC------CccceeeccCccCCCcceecCCc
Confidence            34665554 46679999999998765 344555666777788888888988      789999999998855   47888


Q ss_pred             CcEEEeccCCCCCCCCcceE---EEEecCcEEEEEEeCCCCCCCCceeeEEEEEEEEcCCCceEEEEEecCcccEEEEcc
Q psy15129         89 NSMLVQSLEDVPSAAPEAMS---AGVLNLTSAFVKWSPPPPQHHNGILLGYKIQVKAYNSTKILAQMSLNASTTSVLLNN  165 (308)
Q Consensus        89 ~~v~~~T~~~~P~~~P~~l~---v~~~~~tsv~VsW~pP~~~~~~g~I~~Y~V~~~~~~~~~~~~~~~~~~~~t~~~l~~  165 (308)
                      ....+.|.+.+|+.+|.+++   ....+.+++.|+|.+|+....||.+.+|.|.+.............++....+++|.+
T Consensus       734 ~sk~alt~e~~PSapp~~~~~~s~~~~n~Ta~~Vsw~~pp~d~~ng~~qg~ki~~~~~e~tr~h~n~t~~a~~~sv~i~~  813 (1281)
T KOG4222|consen  734 NSKTALTLEEPPSAPPQGVQHVSKGSYNGTAGSVSWAPPPADVQNGILQGYKIECSGGEKTRIHINKTTNARTGSVTIGN  813 (1281)
T ss_pred             ccccccccccCCCCCCCCccccccccCCCceeeEEecCCcccccCCcccceeEEeecCccccccccccccCCCCceEecc
Confidence            88999999999999999954   445577899999999998999999999999997643233333445567788999999


Q ss_pred             CCCCCeEEEEEEEEeCCCCCCCCccEEEeeC
Q psy15129        166 LTSGAVYTARVVAYTRAGLGPYSAPVTLVMD  196 (308)
Q Consensus       166 L~p~t~Y~v~V~A~n~~G~G~~S~~v~~~T~  196 (308)
                      |.++..|.|+|.|.|.+|.|+.+.+..+.+.
T Consensus       814 l~~g~ay~vtv~a~T~aGvG~~s~p~~~~~~  844 (1281)
T KOG4222|consen  814 LVTGIAYSVTVAARTGAGVGVKSPPQPIVFD  844 (1281)
T ss_pred             ccccceEEEEEeeecCCccCCCCCCeeeecC
Confidence            9999999999999999999998887766554


No 8  
>PF00041 fn3:  Fibronectin type III domain;  InterPro: IPR003961 Fibronectins are multi-domain glycoproteins found in a soluble form in plasma, and in an insoluble form in loose connective tissue and basement membranes []. They contain multiple copies of 3 repeat regions (types I, II and III), which bind to a variety of substances including heparin, collagen, DNA, actin, fibrin and fibronectin receptors on cell surfaces. The wide variety of these substances means that fibronectins are involved in a number of important functions: e.g., wound healing; cell adhesion; blood coagulation; cell differentiation and migration; maintenance of the cellular cytoskeleton; and tumour metastasis []. The role of fibronectin in cell differentiation is demonstrated by the marked reduction in the expression of its gene when neoplastic transformation occurs. Cell attachment has been found to be mediated by the binding of the tetrapeptide RGDS to integrins on the cell surface [], although related sequences can also display cell adhesion activity. Plasma fibronectin occurs as a dimer of 2 different subunits, linked together by 2 disulphide bonds near the C terminus. The difference in the 2 chains occurs in the type III repeat region and is caused by alternative splicing of the mRNA from one gene []. The observation that, in a given protein, an individual repeat of one of the 3 types (e.g., the first FnIII repeat) shows much less similarity to its subsequent tandem repeats within that protein than to its equivalent repeat between fibronectins from other species, has suggested that the repeating structure of fibronectin arose at an early stage of evolution. It also seems to suggest that the structure is subject to high selective pressure []. The fibronectin type III repeat region is an approximately 100 amino acid domain, different tandem repeats of which contain binding sites for DNA, heparin and the cell surface []. The superfamily of sequences believed to contain FnIII repeats represents 45 different families, the majority of which are involved in cell surface binding in some manner, or are receptor protein tyrosine kinases, or cytokine receptors.; GO: 0005515 protein binding; PDB: 1UEM_A 1TDQ_A 1X5I_A 2IC2_B 2IBG_C 2IBB_A 3R8Q_A 2FNB_A 1FNH_A 2EDB_A ....
Probab=99.43  E-value=1.1e-12  Score=95.89  Aligned_cols=84  Identities=35%  Similarity=0.570  Sum_probs=73.5

Q ss_pred             CCcceEEEEecCcEEEEEEeCCCCCCCCceeeEEEEEEEEcCCCceEEEEEecCcccEEEEccCCCCCeEEEEEEEEeCC
Q psy15129        103 APEAMSAGVLNLTSAFVKWSPPPPQHHNGILLGYKIQVKAYNSTKILAQMSLNASTTSVLLNNLTSGAVYTARVVAYTRA  182 (308)
Q Consensus       103 ~P~~l~v~~~~~tsv~VsW~pP~~~~~~g~I~~Y~V~~~~~~~~~~~~~~~~~~~~t~~~l~~L~p~t~Y~v~V~A~n~~  182 (308)
                      +|.++.+...+.++|.|+|++|  ...++.+.+|.|.|.............+....+.+.|.+|.|++.|.|+|+|.|..
T Consensus         2 ~P~~l~v~~~~~~sv~v~W~~~--~~~~~~~~~y~v~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~v~a~~~~   79 (85)
T PF00041_consen    2 APENLSVSNISPTSVTVSWKPP--SSGNGPITGYRVEYRSVNSTSDWQEVTVPGNETSYTITGLQPGTTYEFRVRAVNSD   79 (85)
T ss_dssp             SSEEEEEEEECSSEEEEEEEES--SSTSSSESEEEEEEEETTSSSEEEEEEEETTSSEEEEESCCTTSEEEEEEEEEETT
T ss_pred             cCcCeEEEECCCCEEEEEEECC--CCCCCCeeEEEEEEEecccceeeeeeeeeeeeeeeeeccCCCCCEEEEEEEEEeCC
Confidence            4789999999999999999999  37788999999999987666545666777788899999999999999999999999


Q ss_pred             CCCCCC
Q psy15129        183 GLGPYS  188 (308)
Q Consensus       183 G~G~~S  188 (308)
                      |.|++|
T Consensus        80 g~g~~S   85 (85)
T PF00041_consen   80 GEGPPS   85 (85)
T ss_dssp             EEEEEE
T ss_pred             cCcCCC
Confidence            988754


No 9  
>KOG4222|consensus
Probab=98.88  E-value=1.4e-08  Score=102.61  Aligned_cols=231  Identities=17%  Similarity=0.128  Sum_probs=147.6

Q ss_pred             ccccccCCC-CCCCcceeEEeeeeeccCCCCeeEeCC-CCcccceEecCcccCccCCCCeEEEEEEEEEECcccCCCCCc
Q psy15129         13 SRNYEDGRG-NYEDSRGNYEDGRGKYEDGRNKYEDGR-SKYEDNRSCSGMRMGEINTKMGEVNTRIIEVVVGVIRQPSNS   90 (308)
Q Consensus        13 ~~~~~~~~~-~~~~i~gy~i~wr~~~~~~~~~~~~~~-~~~~~~~~~~~L~pg~~~~p~T~Y~~~V~a~n~~G~g~~S~~   90 (308)
                      .+.|....- ..-.+.||.|.+-.....  ..|.... ....+.+.+.+|+|      .+.|.|.|+|.|..|.+.++..
T Consensus       544 ~LsW~~~s~sg~vP~s~yiieafs~~~~--etw~~ta~~v~~t~~~I~gL~P------~~sylf~vRa~n~~Gis~Ps~~  615 (1281)
T KOG4222|consen  544 TLSWQPTSPSGAVPASGYIIEAFSPDLG--ETWQTTAGRVKTTTYAIRGLKP------NLSYLFLVRAENEQGISDPSTS  615 (1281)
T ss_pred             EecccCCCCCCccccchhHHHHhhhhhc--ccccccccccccceeeecCcCc------cceeeeeeeccccccccCCccc
Confidence            355664433 345577888887654333  2333222 22234567788988      6799999999999999877643


Q ss_pred             -EEEeccCCCCCCC------------CcceE---EEEecCcEEEEEEeCCCCCCCCceeeEEEEEEEEcCC-CceEE-EE
Q psy15129         91 -MLVQSLEDVPSAA------------PEAMS---AGVLNLTSAFVKWSPPPPQHHNGILLGYKIQVKAYNS-TKILA-QM  152 (308)
Q Consensus        91 -v~~~T~~~~P~~~------------P~~l~---v~~~~~tsv~VsW~pP~~~~~~g~I~~Y~V~~~~~~~-~~~~~-~~  152 (308)
                       -.++|.+..+...            -.-++   ...+++++|.+.|..+. .+....|.+|+|.|+.... ...+. ..
T Consensus       616 S~~vrta~a~~~~a~ad~~k~~~~ls~~l~~l~~~~~L~asslr~~w~~~k-q~~~~~i~g~~I~~r~~~~~~a~~s~~~  694 (1281)
T KOG4222|consen  616 SDPVRTAPADAAAAGADHQKVQRELSNELLRLSNPNVLNASSLRLGWTKDK-QHGSQYIQGYRISYRSLGSQLAQWSNAG  694 (1281)
T ss_pred             CCccccCCCChhhhhhhHHHHHHhhcccceeeccccccchhheeeeeeeec-ccCcccccceEEEeccCccccccccccc
Confidence             2345544332111            00122   13457889999999873 4556789999999997654 11122 22


Q ss_pred             EecCcccEEEEccCCCCCeEEEEEEEEeCCC---CCCCCccEEEeeCCCC---C-CCc---cceeeecCEEEEEecCCC-
Q psy15129        153 SLNASTTSVLLNNLTSGAVYTARVVAYTRAG---LGPYSAPVTLVMDPHA---P-PHA---LPSDILITHLVLIHSPIQ-  221 (308)
Q Consensus       153 ~~~~~~t~~~l~~L~p~t~Y~v~V~A~n~~G---~G~~S~~v~~~T~p~~---P-~~~---~~~~~~~tsv~vsW~pP~-  221 (308)
                      .......++.+.+|.|++.|+|.++.+...|   .|..|....+.|...+   | ..+   .......+++.|+|.+|. 
T Consensus       695 v~~~t~~s~v~~nl~p~t~ye~f~~Pf~~~~~s~~g~pS~sk~alt~e~~PSapp~~~~~~s~~~~n~Ta~~Vsw~~pp~  774 (1281)
T KOG4222|consen  695 VTVPTPESVVVPNLKPGTNYEFFVRPFFPHGYSIQGAPSNSKTALTLEEPPSAPPQGVQHVSKGSYNGTAGSVSWAPPPA  774 (1281)
T ss_pred             eeccCCcceeccccCCCccceeeccCccCCCcceecCCcccccccccccCCCCCCCCccccccccCCCceeeEEecCCcc
Confidence            3345567889999999999999999998854   3556666666655433   3 232   333344689999999981 


Q ss_pred             ---------------------------cCCCCCe-eecCC-CCcEE----EeccCCCCccCCcc
Q psy15129        222 ---------------------------VPGSDRS-TQSSL-PHNQY----HSGTRQDWINEDAR  252 (308)
Q Consensus       222 ---------------------------~~~~~~~-~vt~L-p~~~Y----~a~t~~g~g~~s~~  252 (308)
                                                 .+..... ++..| +...|    .+.|.+|.|..++.
T Consensus       775 d~~ng~~qg~ki~~~~~e~tr~h~n~t~~a~~~sv~i~~l~~g~ay~vtv~a~T~aGvG~~s~p  838 (1281)
T KOG4222|consen  775 DVQNGILQGYKIECSGGEKTRIHINKTTNARTGSVTIGNLVTGIAYSVTVAARTGAGVGVKSPP  838 (1281)
T ss_pred             cccCCcccceeEEeecCccccccccccccCCCCceEeccccccceEEEEEeeecCCccCCCCCC
Confidence                                       1111223 77788 77788    57888888876655


No 10 
>cd00063 FN3 Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all animal proteins contain the FN3 repeat; including extracellular and intracellular proteins, membrane spanning cytokine receptors, growth hormone receptors, tyrosine phosphatase receptors, and adhesion molecules. FN3-like domains are also found in bacterial glycosyl hydrolases.
Probab=98.84  E-value=7.5e-08  Score=69.82  Aligned_cols=86  Identities=28%  Similarity=0.470  Sum_probs=64.4

Q ss_pred             CCcceEEEEecCcEEEEEEeCCCCCCCCceeeEEEEEEEEcCCCceEEEEEec-CcccEEEEccCCCCCeEEEEEEEEeC
Q psy15129        103 APEAMSAGVLNLTSAFVKWSPPPPQHHNGILLGYKIQVKAYNSTKILAQMSLN-ASTTSVLLNNLTSGAVYTARVVAYTR  181 (308)
Q Consensus       103 ~P~~l~v~~~~~tsv~VsW~pP~~~~~~g~I~~Y~V~~~~~~~~~~~~~~~~~-~~~t~~~l~~L~p~t~Y~v~V~A~n~  181 (308)
                      +|.++.+......++.|+|.+|  ...++.+..|.|.+....... +...... .....+.+.+|.|++.|.|+|+|.+.
T Consensus         3 ~p~~~~~~~~~~~~~~v~W~~~--~~~~~~~~~y~v~~~~~~~~~-~~~~~~~~~~~~~~~i~~l~p~~~Y~~~v~a~~~   79 (93)
T cd00063           3 PPTNLRVTDVTSTSVTLSWTPP--EDDGGPITGYVVEYREKGSGD-WKEVEVTPGSETSYTLTGLKPGTEYEFRVRAVNG   79 (93)
T ss_pred             CCCCcEEEEecCCEEEEEECCC--CCCCCcceeEEEEEeeCCCCC-CEEeeccCCcccEEEEccccCCCEEEEEEEEECC
Confidence            3667887777889999999998  333367889999998754222 2222222 36778999999999999999999998


Q ss_pred             CCCCCCCccE
Q psy15129        182 AGLGPYSAPV  191 (308)
Q Consensus       182 ~G~G~~S~~v  191 (308)
                      .|.|.++...
T Consensus        80 ~~~~~~s~~~   89 (93)
T cd00063          80 GGESPPSESV   89 (93)
T ss_pred             CccCCCcccc
Confidence            8888766533


No 11 
>KOG4802|consensus
Probab=98.65  E-value=4e-07  Score=83.11  Aligned_cols=141  Identities=19%  Similarity=0.242  Sum_probs=92.6

Q ss_pred             cCCCCeeEeCCCCccc-ceEecCcccCccCCCCeEEEEEEEEEECccc---CCCCCcEEEeccCCCCCCCCcceEEEEec
Q psy15129         38 EDGRNKYEDGRSKYED-NRSCSGMRMGEINTKMGEVNTRIIEVVVGVI---RQPSNSMLVQSLEDVPSAAPEAMSAGVLN  113 (308)
Q Consensus        38 ~~~~~~~~~~~~~~~~-~~~~~~L~pg~~~~p~T~Y~~~V~a~n~~G~---g~~S~~v~~~T~~~~P~~~P~~l~v~~~~  113 (308)
                      +.+...|..+...... ....++++||.      -|+|+|.|+|..|.   +.+|.+....-...+| .+|.++++..+.
T Consensus       193 e~~~thwQtv~~t~~e~~~~~t~~rPgR------wyefrvaavn~~G~rGFs~PSkpf~ssk~pkaP-p~P~dl~l~~v~  265 (516)
T KOG4802|consen  193 ELGPTHWQTVEKTMEENTYIFTDMRPGR------WYEFRVAAVNAYGFRGFSEPSKPFPSSKNPKAP-PSPNDLKLIGVQ  265 (516)
T ss_pred             ccccccceeeeecCCCceeeeeecCcce------eEEEEEeeeecccccccCCCCCCCCCCCCCCCC-cCcccceeeeee
Confidence            3456677666555554 66678899866      99999999998876   3444443333333334 457888876543


Q ss_pred             Cc---EEEEEEeCCCCCCCCceeeEEEEEEEEcC-CCce--E--EEEEecCcccEEEEccCCCCCeEEEEEEEEeCCCCC
Q psy15129        114 LT---SAFVKWSPPPPQHHNGILLGYKIQVKAYN-STKI--L--AQMSLNASTTSVLLNNLTSGAVYTARVVAYTRAGLG  185 (308)
Q Consensus       114 ~t---sv~VsW~pP~~~~~~g~I~~Y~V~~~~~~-~~~~--~--~~~~~~~~~t~~~l~~L~p~t~Y~v~V~A~n~~G~G  185 (308)
                      .+   ...|.|.|++.   +-+|..|.|.|...- ....  .  ........  .+.|.+|.|+..|.|.|.|....|.+
T Consensus       266 ~dG~~~~~v~w~P~~s---dlPv~~Yki~Ws~~v~s~k~~m~tks~~~k~th--q~si~~L~Pns~Y~VevqAi~y~g~~  340 (516)
T KOG4802|consen  266 FDGRYMLKVVWCPSKS---DLPVEKYKITWSLYVNSAKASMITKSSYVKDTH--QFSIKELLPNSSYYVEVQAISYLGSR  340 (516)
T ss_pred             ecceEEEEEEeCCCCC---CCcceeeEEEeehhhhhhhhhcccccceeeccc--hhhhhhcCCCCeEEEEEEEEEeccCc
Confidence            32   46788988743   458999999997532 1110  0  01112222  34499999999999999999999887


Q ss_pred             CC-Ccc
Q psy15129        186 PY-SAP  190 (308)
Q Consensus       186 ~~-S~~  190 (308)
                      .. |+.
T Consensus       341 rLksek  346 (516)
T KOG4802|consen  341 RLKSEK  346 (516)
T ss_pred             ccccce
Confidence            65 443


No 12 
>smart00060 FN3 Fibronectin type 3 domain. One of three types of internal repeat within the plasma protein, fibronectin. The tenth fibronectin type III repeat contains a RGD cell recognition  sequence in a flexible loop between 2 strands. Type III modules are present in both extracellular and intracellular proteins.
Probab=98.42  E-value=8.7e-06  Score=57.03  Aligned_cols=77  Identities=27%  Similarity=0.427  Sum_probs=51.0

Q ss_pred             CcceEEEEecCcEEEEEEeCCCCCCCCceeeEEEEEEEEcCCCc--eEEEEEecCcccEEEEccCCCCCeEEEEEEEEeC
Q psy15129        104 PEAMSAGVLNLTSAFVKWSPPPPQHHNGILLGYKIQVKAYNSTK--ILAQMSLNASTTSVLLNNLTSGAVYTARVVAYTR  181 (308)
Q Consensus       104 P~~l~v~~~~~tsv~VsW~pP~~~~~~g~I~~Y~V~~~~~~~~~--~~~~~~~~~~~t~~~l~~L~p~t~Y~v~V~A~n~  181 (308)
                      |.++.+......++.|+|++|+.  .+.  .+|.+.|.......  .+...........+.+.+|.|++.|.|+|+|.+.
T Consensus         4 p~~~~~~~~~~~~~~v~W~~~~~--~~~--~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~~~~~Y~v~v~a~~~   79 (83)
T smart00060        4 PSNLRVTDVTSTSVTLSWEPPPD--DGI--TGYIVGYRVEYREEGSSWKEVNVTPSSTSYTLTGLKPGTEYEFRVRAVNG   79 (83)
T ss_pred             CCcEEEEEEeCCEEEEEECCCCC--CCC--CccEEEEEEEEecCCCccEEEEecCCccEEEEeCcCCCCEEEEEEEEEcc
Confidence            44677777777799999997732  221  45666655432111  1222233333678999999999999999999997


Q ss_pred             CCC
Q psy15129        182 AGL  184 (308)
Q Consensus       182 ~G~  184 (308)
                      .|.
T Consensus        80 ~g~   82 (83)
T smart00060       80 AGE   82 (83)
T ss_pred             cCC
Confidence            553


No 13 
>KOG4258|consensus
Probab=98.28  E-value=1.1e-06  Score=86.76  Aligned_cols=133  Identities=18%  Similarity=0.340  Sum_probs=90.8

Q ss_pred             CcccceEecCcccCccCCCCeEEEEEEEEEECccc----CCCCCcEEEeccCCCC-CCCCcceEEEE-ecCcEEEEEEeC
Q psy15129         50 KYEDNRSCSGMRMGEINTKMGEVNTRIIEVVVGVI----RQPSNSMLVQSLEDVP-SAAPEAMSAGV-LNLTSAFVKWSP  123 (308)
Q Consensus        50 ~~~~~~~~~~L~pg~~~~p~T~Y~~~V~a~n~~G~----g~~S~~v~~~T~~~~P-~~~P~~l~v~~-~~~tsv~VsW~p  123 (308)
                      .....+++++|++      ||.|.+.++|+|..+.    |.. ..+..+|....- ..-|..+.... ...+++.|+|.+
T Consensus       779 ~n~~~~vi~~Lrh------~tlY~i~l~aCnh~~~~~~cS~a-~~v~~RT~~~~~aD~i~g~v~we~~~~~~~v~l~w~E  851 (1025)
T KOG4258|consen  779 GNKESYVISGLRH------FTLYRIDLQACNHATPKCGCSHA-AFVFARTMPTMGADDIPGPVTWECHIEMNSVILRWLE  851 (1025)
T ss_pred             ccchhhhhhcccc------chhhhhhHhhhcccccccccchh-hhhhhccccccccccCCCceeEecccCcceEEEecCC
Confidence            3445677888888      9999999999998876    322 223444432211 11122233333 378899999999


Q ss_pred             CCCCCCCceeeEEEEEEEEcCCCceEEEE--EecCcccEEEEccCCCCCeEEEEEEEEeCCCCCCCCccEE
Q psy15129        124 PPPQHHNGILLGYKIQVKAYNSTKILAQM--SLNASTTSVLLNNLTSGAVYTARVVAYTRAGLGPYSAPVT  192 (308)
Q Consensus       124 P~~~~~~g~I~~Y~V~~~~~~~~~~~~~~--~~~~~~t~~~l~~L~p~t~Y~v~V~A~n~~G~G~~S~~v~  192 (308)
                      |  ..+||.|..|.|.|+..........+  ........+.+..|.|| .|.++|+|..-+|.|++..++.
T Consensus       852 P--~~pNGli~~Y~Vk~r~~~~et~v~cvsR~~~~k~~gv~l~~l~~G-~y~~~vratSlaGng~~t~~~~  919 (1025)
T KOG4258|consen  852 P--KEPNGLILNYEVKYRRNGDETHVECVSRMDYAKAGGVYLKRLNPG-NYSVRVRATSLAGNGSWTESVI  919 (1025)
T ss_pred             C--CCCCccEEEEEEEEeeccCcchhhhhhhhhhhhcCceEEEecCCC-cEEEEEEEEeeccCCCCcCCcc
Confidence            9  88999999999999975433221111  11234456778899988 9999999999999999866553


No 14 
>PF00041 fn3:  Fibronectin type III domain;  InterPro: IPR003961 Fibronectins are multi-domain glycoproteins found in a soluble form in plasma, and in an insoluble form in loose connective tissue and basement membranes []. They contain multiple copies of 3 repeat regions (types I, II and III), which bind to a variety of substances including heparin, collagen, DNA, actin, fibrin and fibronectin receptors on cell surfaces. The wide variety of these substances means that fibronectins are involved in a number of important functions: e.g., wound healing; cell adhesion; blood coagulation; cell differentiation and migration; maintenance of the cellular cytoskeleton; and tumour metastasis []. The role of fibronectin in cell differentiation is demonstrated by the marked reduction in the expression of its gene when neoplastic transformation occurs. Cell attachment has been found to be mediated by the binding of the tetrapeptide RGDS to integrins on the cell surface [], although related sequences can also display cell adhesion activity. Plasma fibronectin occurs as a dimer of 2 different subunits, linked together by 2 disulphide bonds near the C terminus. The difference in the 2 chains occurs in the type III repeat region and is caused by alternative splicing of the mRNA from one gene []. The observation that, in a given protein, an individual repeat of one of the 3 types (e.g., the first FnIII repeat) shows much less similarity to its subsequent tandem repeats within that protein than to its equivalent repeat between fibronectins from other species, has suggested that the repeating structure of fibronectin arose at an early stage of evolution. It also seems to suggest that the structure is subject to high selective pressure []. The fibronectin type III repeat region is an approximately 100 amino acid domain, different tandem repeats of which contain binding sites for DNA, heparin and the cell surface []. The superfamily of sequences believed to contain FnIII repeats represents 45 different families, the majority of which are involved in cell surface binding in some manner, or are receptor protein tyrosine kinases, or cytokine receptors.; GO: 0005515 protein binding; PDB: 1UEM_A 1TDQ_A 1X5I_A 2IC2_B 2IBG_C 2IBB_A 3R8Q_A 2FNB_A 1FNH_A 2EDB_A ....
Probab=98.28  E-value=1.1e-06  Score=63.64  Aligned_cols=74  Identities=11%  Similarity=0.006  Sum_probs=55.5

Q ss_pred             cccccccccccCCCCCCCcceeEEeeeeeccCCCCeeEeCCCCcccceEecCcccCccCCCCeEEEEEEEEEECcccCCC
Q psy15129          8 GQYEDSRNYEDGRGNYEDSRGNYEDGRGKYEDGRNKYEDGRSKYEDNRSCSGMRMGEINTKMGEVNTRIIEVVVGVIRQP   87 (308)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~i~gy~i~wr~~~~~~~~~~~~~~~~~~~~~~~~~L~pg~~~~p~T~Y~~~V~a~n~~G~g~~   87 (308)
                      +.-.-.++|.........+.+|.|.|+............ .........+.+|.|      .+.|.|+|+|.+..|.|++
T Consensus        12 ~~~sv~v~W~~~~~~~~~~~~y~v~~~~~~~~~~~~~~~-~~~~~~~~~i~~L~p------~t~Y~~~v~a~~~~g~g~~   84 (85)
T PF00041_consen   12 SPTSVTVSWKPPSSGNGPITGYRVEYRSVNSTSDWQEVT-VPGNETSYTITGLQP------GTTYEFRVRAVNSDGEGPP   84 (85)
T ss_dssp             CSSEEEEEEEESSSTSSSESEEEEEEEETTSSSEEEEEE-EETTSSEEEEESCCT------TSEEEEEEEEEETTEEEEE
T ss_pred             CCCEEEEEEECCCCCCCCeeEEEEEEEecccceeeeeee-eeeeeeeeeeccCCC------CCEEEEEEEEEeCCcCcCC
Confidence            344557899999888889999999998765444222222 233344788899998      7799999999999998876


Q ss_pred             C
Q psy15129         88 S   88 (308)
Q Consensus        88 S   88 (308)
                      |
T Consensus        85 S   85 (85)
T PF00041_consen   85 S   85 (85)
T ss_dssp             E
T ss_pred             C
Confidence            4


No 15 
>PF09294 Interfer-bind:  Interferon-alpha/beta receptor, fibronectin type III;  InterPro: IPR015373 Members of this family adopt a secondary structure consisting of seven beta-strands arranged in an immunoglobulin-like beta-sandwich, in a Greek-key topology. They are required for binding to interferon-alpha []. ; PDB: 1A21_A 3LQM_B 3ELA_T 1AHW_C 2A2Q_T 1TFH_B 1FAK_T 1WSS_T 1W2K_T 2FIR_T ....
Probab=97.72  E-value=0.0002  Score=54.59  Aligned_cols=89  Identities=21%  Similarity=0.294  Sum_probs=58.3

Q ss_pred             CCcceEEEEecCcEEEEEEeCCCC----CCCCce------eeEEEEEEEEcCCCceEEEEEecCcccEEEEccCCCCCeE
Q psy15129        103 APEAMSAGVLNLTSAFVKWSPPPP----QHHNGI------LLGYKIQVKAYNSTKILAQMSLNASTTSVLLNNLTSGAVY  172 (308)
Q Consensus       103 ~P~~l~v~~~~~tsv~VsW~pP~~----~~~~g~------I~~Y~V~~~~~~~~~~~~~~~~~~~~t~~~l~~L~p~t~Y  172 (308)
                      || .+.+ ....++|.|.+.+|..    ...+..      -..|.|.|+..+...  .........+.++|.+|.|++.|
T Consensus         5 PP-~v~v-~~~~~~l~V~i~~P~~~~~~~~~~~~l~~~~~~~~Y~v~~~~~~~~~--~~~~~~~~~~~~~l~~L~p~t~Y   80 (106)
T PF09294_consen    5 PP-SVNV-SSCGGSLHVTIKPPMTPLRAGGKNSSLRDIYPSLSYNVSYWKNGSNE--KKKEIETKNSSVTLSDLKPGTNY   80 (106)
T ss_dssp             SS-EEEE-EEETTEEEEEEEESEEEEECSSSEEEHHHHHGG-EEEEEEEETTTSC--EEEEEESSSEEEEEES--TTSEE
T ss_pred             CC-EEEE-EECCCEEEEEEECCCcccccCCCCCcHHHhCCCeEEEEEEEeCCCcc--ceEEEeecCCEEEEeCCCCCCCE
Confidence            46 4776 6778899999999931    111111      257999999865542  23345566778899999999999


Q ss_pred             EEEEEEEeCC--CCCCCCccEEEee
Q psy15129        173 TARVVAYTRA--GLGPYSAPVTLVM  195 (308)
Q Consensus       173 ~v~V~A~n~~--G~G~~S~~v~~~T  195 (308)
                      .|+|+|....  -.|.+|.+..+.|
T Consensus        81 Cv~V~~~~~~~~~~s~~S~~~C~~t  105 (106)
T PF09294_consen   81 CVSVQAFSPSQNKNSQPSEPQCITT  105 (106)
T ss_dssp             EEEEEEEECSSTEEEEEBSEEEEE-
T ss_pred             EEEEEEEeccCCCcCCCCCCEeEeC
Confidence            9999994432  2466777776655


No 16 
>KOG4367|consensus
Probab=97.71  E-value=6.1e-05  Score=69.43  Aligned_cols=95  Identities=23%  Similarity=0.378  Sum_probs=72.1

Q ss_pred             CCCCCCCCcceEE--EEecCcEEEEEEeCCCCCCCCceeeEEEEEEEEcCCCceEEEEEecCcccEEEEccCCCCCeEEE
Q psy15129         97 EDVPSAAPEAMSA--GVLNLTSAFVKWSPPPPQHHNGILLGYKIQVKAYNSTKILAQMSLNASTTSVLLNNLTSGAVYTA  174 (308)
Q Consensus        97 ~~~P~~~P~~l~v--~~~~~tsv~VsW~pP~~~~~~g~I~~Y~V~~~~~~~~~~~~~~~~~~~~t~~~l~~L~p~t~Y~v  174 (308)
                      ..+|..|  .+..  .....++++|+|..|+  ....+..||.++....++ ..+. ....+..+.++|.+|.-++.|..
T Consensus       435 s~vpatp--ilq~~ec~t~nns~t~~wkqp~--~~~~~~dg~~leld~g~~-g~fr-evy~g~etmctvdglhfns~y~a  508 (699)
T KOG4367|consen  435 SPVPATP--ILQLEECCTHNNSATLSWKQPP--LSTVPADGYILELDDGNG-GQFR-EVYVGKETMCTVDGLHFNSTYNA  508 (699)
T ss_pred             CCCCCCc--eeehhhhhccCCceEEEeecCC--CCCCCCcceEEEeecCCC-Ccee-EEEecCceeEEecceecchhHHH
Confidence            3455553  3333  2356789999999773  334578899999976433 3333 35567889999999999999999


Q ss_pred             EEEEEeCCCCCCCCccEEEeeCC
Q psy15129        175 RVVAYTRAGLGPYSAPVTLVMDP  197 (308)
Q Consensus       175 ~V~A~n~~G~G~~S~~v~~~T~p  197 (308)
                      +|.|+|..|.+++|..+..+|..
T Consensus       509 rvka~n~tg~s~ys~tl~lqts~  531 (699)
T KOG4367|consen  509 RVKAFNKTGVSPYSKTLVLQTSE  531 (699)
T ss_pred             HHHHhhccCCCcccceeEeeecc
Confidence            99999999999999998888874


No 17 
>KOG4258|consensus
Probab=97.55  E-value=0.0003  Score=70.12  Aligned_cols=81  Identities=22%  Similarity=0.310  Sum_probs=61.8

Q ss_pred             ceEecCcccCccCCCCeEEEEEEEEEEC--cccC--CCCCcEEEeccCCCCCCCCcceEEEEecCcEEEEEEeCCCCCCC
Q psy15129         54 NRSCSGMRMGEINTKMGEVNTRIIEVVV--GVIR--QPSNSMLVQSLEDVPSAAPEAMSAGVLNLTSAFVKWSPPPPQHH  129 (308)
Q Consensus        54 ~~~~~~L~pg~~~~p~T~Y~~~V~a~n~--~G~g--~~S~~v~~~T~~~~P~~~P~~l~v~~~~~tsv~VsW~pP~~~~~  129 (308)
                      ...+.+|+|      +|.|.+-|.+...  .+..  ..|....++|..+.|+. |..+-..+.+++.|.|+|.||  ..+
T Consensus       567 ~~~l~~LkP------~TqYAvfVkT~t~t~~~~~~~A~S~I~YvqT~~~~Psp-Pl~~ls~snsSsqi~l~W~pP--~~p  637 (1025)
T KOG4258|consen  567 GFLLDGLKP------WTQYAVFVKTLTVTEAHEAYEAKSKIGYVQTLPDIPSP-PLDVLSKSNSSSQILLKWKPP--SQP  637 (1025)
T ss_pred             ceehhcCCc------cceeEEEEeeeehhhhccccccccceEEEEecCCCCCC-cchhhhccCcchheeEEecCC--CCC
Confidence            344555555      9999999998732  2221  35677889999999865 666666666777899999999  889


Q ss_pred             CceeeEEEEEEEEc
Q psy15129        130 NGILLGYKIQVKAY  143 (308)
Q Consensus       130 ~g~I~~Y~V~~~~~  143 (308)
                      ||.|+.|.|.|...
T Consensus       638 NG~lt~Ylv~wer~  651 (1025)
T KOG4258|consen  638 NGNLTHYLVVWERQ  651 (1025)
T ss_pred             CCceeEEEEEEEec
Confidence            99999999998764


No 18 
>KOG4152|consensus
Probab=97.49  E-value=0.00086  Score=63.57  Aligned_cols=121  Identities=17%  Similarity=0.264  Sum_probs=77.3

Q ss_pred             CCeEEEEEEEEEECcccCCCCCcEEEeccC-CCCCCCCcceEEEEecCcEEEEEEeCCCCCCCCceeeEEEEEEEEc---
Q psy15129         68 KMGEVNTRIIEVVVGVIRQPSNSMLVQSLE-DVPSAAPEAMSAGVLNLTSAFVKWSPPPPQHHNGILLGYKIQVKAY---  143 (308)
Q Consensus        68 p~T~Y~~~V~a~n~~G~g~~S~~v~~~T~~-~~P~~~P~~l~v~~~~~tsv~VsW~pP~~~~~~g~I~~Y~V~~~~~---  143 (308)
                      +-+.|.|+|.|.|+.|.|++|....+.|.. +.|.. |..+++ ..+-..+.+.|.||. ....|.|+.|.....-.   
T Consensus       656 ~Gq~yrfrV~aIng~G~gp~s~i~~~kTc~pG~P~a-pS~~ri-~k~~eGi~l~weppt-~p~sg~Iieys~ylAi~tq~  732 (830)
T KOG4152|consen  656 TGQAYRFRVTAINGKGPGPASTILKLKTCAPGKPTA-PSGARI-KKTIEGISLVWEPPT-KPGSGTIIEYSPYLAIITQA  732 (830)
T ss_pred             cccceeeeeeeeeccCCCchhhheeeeeccCCCCCC-cccccc-cccccceeecccCCC-CCCCcceEEeehhhHhhhhh
Confidence            355999999999999999999988888763 44543 556654 334457999999983 33478888888764221   


Q ss_pred             ---CCCceEEEEEecCcccEEE---------EccCCCCCeEEEEEEEEeCCCCCCCCccE
Q psy15129        144 ---NSTKILAQMSLNASTTSVL---------LNNLTSGAVYTARVVAYTRAGLGPYSAPV  191 (308)
Q Consensus       144 ---~~~~~~~~~~~~~~~t~~~---------l~~L~p~t~Y~v~V~A~n~~G~G~~S~~v  191 (308)
                         +.+........-+-.+.+.         +.+...+..-.|+|.|.|..|.|+.....
T Consensus       733 ~~~~~sql~fmr~ycg~~t~c~vt~g~l~tA~~d~t~~paivfri~aknekGyGpatqvr  792 (830)
T KOG4152|consen  733 GATGVSQLPFMRSYCGIITTCVVTSGKLITAVPDITTGPAIVFRIVAKNEKGYGPATQVR  792 (830)
T ss_pred             hccCccccceeeeecccceeeEEecccceeeccccccCcceEEEEEecCCCCCCcceEEE
Confidence               1111111111112222222         22344566789999999999999865433


No 19 
>KOG4802|consensus
Probab=97.08  E-value=0.011  Score=54.83  Aligned_cols=72  Identities=18%  Similarity=0.318  Sum_probs=47.8

Q ss_pred             EEEEEecCcccEEEEccCCCCCeEEEEEEEEeCCCCCCC---CccEEEeeCCCC---CCCccceeeecC---EEEEEecC
Q psy15129        149 LAQMSLNASTTSVLLNNLTSGAVYTARVVAYTRAGLGPY---SAPVTLVMDPHA---PPHALPSDILIT---HLVLIHSP  219 (308)
Q Consensus       149 ~~~~~~~~~~t~~~l~~L~p~t~Y~v~V~A~n~~G~G~~---S~~v~~~T~p~~---P~~~~~~~~~~t---sv~vsW~p  219 (308)
                      |+.+........+.+.++.||..|.|+|.|+|..|.--+   |.+....-.|.+   |.++....+..+   .+.|-|.|
T Consensus       199 wQtv~~t~~e~~~~~t~~rPgRwyefrvaavn~~G~rGFs~PSkpf~ssk~pkaPp~P~dl~l~~v~~dG~~~~~v~w~P  278 (516)
T KOG4802|consen  199 WQTVEKTMEENTYIFTDMRPGRWYEFRVAAVNAYGFRGFSEPSKPFPSSKNPKAPPSPNDLKLIGVQFDGRYMLKVVWCP  278 (516)
T ss_pred             ceeeeecCCCceeeeeecCcceeEEEEEeeeecccccccCCCCCCCCCCCCCCCCcCcccceeeeeeecceEEEEEEeCC
Confidence            445555555667888999999999999999998875444   444444444444   445555444322   36788887


Q ss_pred             C
Q psy15129        220 I  220 (308)
Q Consensus       220 P  220 (308)
                      +
T Consensus       279 ~  279 (516)
T KOG4802|consen  279 S  279 (516)
T ss_pred             C
Confidence            7


No 20 
>PF10179 DUF2369:  Uncharacterised conserved protein (DUF2369);  InterPro: IPR019326  This is a proline-rich region of a group of proteins found from plants to fungi. The function is largely unknown, although the entry contains Fibronectin type-III domain-containing protein C4orf31, which promotes matrix assembly and cell adhesiveness.
Probab=97.03  E-value=0.056  Score=48.84  Aligned_cols=162  Identities=13%  Similarity=0.128  Sum_probs=82.4

Q ss_pred             CCcccceEecCcccCccCCCCeEEEEEEEEEECc-ccCCCCCcEEEeccCCCCCCCCcceE-----EEEecCc--EEEEE
Q psy15129         49 SKYEDNRSCSGMRMGEINTKMGEVNTRIIEVVVG-VIRQPSNSMLVQSLEDVPSAAPEAMS-----AGVLNLT--SAFVK  120 (308)
Q Consensus        49 ~~~~~~~~~~~L~pg~~~~p~T~Y~~~V~a~n~~-G~g~~S~~v~~~T~~~~P~~~P~~l~-----v~~~~~t--sv~Vs  120 (308)
                      .+.....++.+|+|      .|.|.|.|.++|.. +.+..-......|.+..... |..|+     ...+...  .-..+
T Consensus        11 vg~~t~~t~~~L~p------~t~YyfdVF~vn~~~n~ssay~gt~~~t~~~~r~~-~~~Lkdg~l~~~~l~~~~g~~~f~   83 (300)
T PF10179_consen   11 VGQKTNQTLSGLKP------DTTYYFDVFVVNQLTNNSSAYLGTFARTREENRSK-PTRLKDGKLTQVKLKGKGGFKFFS   83 (300)
T ss_pred             cCCCceEEeccCCC------CCeEEEEEEEEECCCCceeeeeEEEEEEccccCCC-cEEcccCcEEEEEECCcCceeEEE
Confidence            44556778888988      67999999999974 33322223344443332222 33332     1222211  23345


Q ss_pred             EeCCCCCCCCceeeEEE--------EEEEEcCCCceEEEEEecCcccEEEEccCCCCCeEEEEEEEEeCCCCCCCCccEE
Q psy15129        121 WSPPPPQHHNGILLGYK--------IQVKAYNSTKILAQMSLNASTTSVLLNNLTSGAVYTARVVAYTRAGLGPYSAPVT  192 (308)
Q Consensus       121 W~pP~~~~~~g~I~~Y~--------V~~~~~~~~~~~~~~~~~~~~t~~~l~~L~p~t~Y~v~V~A~n~~G~G~~S~~v~  192 (308)
                      ...|.....+..+.-+.        |.....+ .... ....-..-..+.|.++.|+..|.+++.+.|... +..+.-+.
T Consensus        84 f~vP~~~~~~~~~~l~v~~C~G~V~v~i~r~g-k~l~-~~~~v~~~~~f~l~~~~~g~~Yliri~~~~~~e-~~~~~kV~  160 (300)
T PF10179_consen   84 FKVPKRSSTHQSLWLFVQSCSGSVRVEISRNG-KILL-SQKNVEGLRHFRLSGVKPGERYLIRIQISNSDE-GPSTFKVQ  160 (300)
T ss_pred             EcCCcCCCCCccEEEEEEeCCCeEEEEEEECC-eEEe-eeecccceEEEEECCCCCCCeEEEEEEccCCCC-CceEEEEE
Confidence            55441111122221111        1121111 0000 111122346788999999999999998876432 23232233


Q ss_pred             -EeeC------CCCCCCcccee----eecCEEEEEecCC
Q psy15129        193 -LVMD------PHAPPHALPSD----ILITHLVLIHSPI  220 (308)
Q Consensus       193 -~~T~------p~~P~~~~~~~----~~~tsv~vsW~pP  220 (308)
                       ..|.      |..|.+..+..    .+.++++|.|.+-
T Consensus       161 aast~~~~~~~P~LP~d~~Ik~f~~lrtC~SvTIAW~~s  199 (300)
T PF10179_consen  161 AASTNPSKQPYPQLPDDTSIKEFNKLRTCNSVTIAWLGS  199 (300)
T ss_pred             EecCCcccCCCCCCCCCCceeEEcCCcccceEEEEEecC
Confidence             3333      44566655533    3368999999864


No 21 
>KOG3632|consensus
Probab=97.02  E-value=0.001  Score=67.12  Aligned_cols=156  Identities=15%  Similarity=0.113  Sum_probs=100.2

Q ss_pred             CeEEEEEEEEEECcccCCCCCcEEEeccCCCCCCCCcceEEEEecCcEEEEEEeCCCCCCCCceeeEEEEEEEEcCCCce
Q psy15129         69 MGEVNTRIIEVVVGVIRQPSNSMLVQSLEDVPSAAPEAMSAGVLNLTSAFVKWSPPPPQHHNGILLGYKIQVKAYNSTKI  148 (308)
Q Consensus        69 ~T~Y~~~V~a~n~~G~g~~S~~v~~~T~~~~P~~~P~~l~v~~~~~tsv~VsW~pP~~~~~~g~I~~Y~V~~~~~~~~~~  148 (308)
                      ...|.+.|.+..+.|..+....+ .-+...+|. .|.++++..++.++..++|-+-  ....     -.+.|.  +..+.
T Consensus       642 a~s~~isvq~ltSrGsqd~lrc~-Llvgg~a~v-vpsqlrv~n~tqtSa~itwvp~--nsn~-----~Hviyl--n~eE~  710 (1335)
T KOG3632|consen  642 AHSGYISVQRLTSRGSQDQLRCI-LLVGGAAPV-VPSQLRVWNATQTSAMITWVPF--NSNF-----LHVIYL--NAEEP  710 (1335)
T ss_pred             CCceeeehhhhhccCCCCcceee-Eeccccccc-cchhhhhhhhhchhhheeeeec--CCCc-----ceeeec--CCccC
Confidence            34688899999988887665543 334455564 4889999999999999999876  2211     112232  22111


Q ss_pred             EEEEEecCcccEEEEccCCCCCeEEEEEEEEeC-CC--------CCCCCccEEEeeCCCCCCC----ccce-eeecCEEE
Q psy15129        149 LAQMSLNASTTSVLLNNLTSGAVYTARVVAYTR-AG--------LGPYSAPVTLVMDPHAPPH----ALPS-DILITHLV  214 (308)
Q Consensus       149 ~~~~~~~~~~t~~~l~~L~p~t~Y~v~V~A~n~-~G--------~G~~S~~v~~~T~p~~P~~----~~~~-~~~~tsv~  214 (308)
                         .......-.+++.+|.|++.|.++|-|.-. .+        -+....++.+.|.+..|+.    +.+. -.+...+.
T Consensus       711 ---~ps~a~~y~ytf~~lrpgt~y~a~vea~~p~q~pwdl~~v~~etr~atv~f~tLpAGppappldV~vE~g~spg~l~  787 (1335)
T KOG3632|consen  711 ---RPSVAEMYNYTFMRLRPGTDYWASVEAALPRQEPWDLRMVPMETRQATVLFRTLPAGPPAPPLDVKVETGGSPGRLE  787 (1335)
T ss_pred             ---CCchhhhhHHHHhccCCCCccceecccccCcCCCcccccchhhhhccceeeecccCCCCCCchheeeecCCCCceee
Confidence               122344556788999999999999988654 11        1122455677777555443    3322 23477899


Q ss_pred             EEecCCCcCCCCCeeecCC-CCcEE
Q psy15129        215 LIHSPIQVPGSDRSTQSSL-PHNQY  238 (308)
Q Consensus       215 vsW~pP~~~~~~~~~vt~L-p~~~Y  238 (308)
                      |+|.||.+...+.+.-..+ +|.+|
T Consensus       788 vswrPptldsag~sngv~vtgYavy  812 (1335)
T KOG3632|consen  788 VSWRPPTLDSAGCSNGVAVTGYAVY  812 (1335)
T ss_pred             eeccCceeccccccCceeeeeeeee
Confidence            9999998887665522233 77777


No 22 
>PF10179 DUF2369:  Uncharacterised conserved protein (DUF2369);  InterPro: IPR019326  This is a proline-rich region of a group of proteins found from plants to fungi. The function is largely unknown, although the entry contains Fibronectin type-III domain-containing protein C4orf31, which promotes matrix assembly and cell adhesiveness.
Probab=96.91  E-value=0.046  Score=49.40  Aligned_cols=130  Identities=15%  Similarity=0.147  Sum_probs=75.2

Q ss_pred             ceEecCcccCccCCCCeEEEEEEEEEECcccCCCCCcEE-EeccCC---CCCCCCcceEEEE----ecCcEEEEEEeCCC
Q psy15129         54 NRSCSGMRMGEINTKMGEVNTRIIEVVVGVIRQPSNSML-VQSLED---VPSAAPEAMSAGV----LNLTSAFVKWSPPP  125 (308)
Q Consensus        54 ~~~~~~L~pg~~~~p~T~Y~~~V~a~n~~G~g~~S~~v~-~~T~~~---~P~~~P~~l~v~~----~~~tsv~VsW~pP~  125 (308)
                      ...++|+.||.      .|.+++.+.+... +.....+. ..|.+.   .|.- |.+..+..    .+-++++|.|.+-+
T Consensus       129 ~f~l~~~~~g~------~Yliri~~~~~~e-~~~~~kV~aast~~~~~~~P~L-P~d~~Ik~f~~lrtC~SvTIAW~~s~  200 (300)
T PF10179_consen  129 HFRLSGVKPGE------RYLIRIQISNSDE-GPSTFKVQAASTNPSKQPYPQL-PDDTSIKEFNKLRTCNSVTIAWLGSP  200 (300)
T ss_pred             EEEECCCCCCC------eEEEEEEccCCCC-CceEEEEEEecCCcccCCCCCC-CCCCceeEEcCCcccceEEEEEecCC
Confidence            45566666654      9999998776432 22222233 333322   2322 55666543    34579999999863


Q ss_pred             CCCCCceeeEEEEEEEEcCCC----------------c----e--EEEE-Ee--------cCcccEEEEccCCCCCeEEE
Q psy15129        126 PQHHNGILLGYKIQVKAYNST----------------K----I--LAQM-SL--------NASTTSVLLNNLTSGAVYTA  174 (308)
Q Consensus       126 ~~~~~g~I~~Y~V~~~~~~~~----------------~----~--~~~~-~~--------~~~~t~~~l~~L~p~t~Y~v  174 (308)
                        +..   ..|.|..+.....                .    .  .... ..        ....+..+|.+|+||+.|.|
T Consensus       201 --d~~---~kYCvy~~~~~~~~~~~~~~~~~n~C~~~~sr~k~e~v~Ck~~~~~n~~~~~~~~v~tetI~~L~PG~~Yl~  275 (300)
T PF10179_consen  201 --DRS---IKYCVYRREEHSNYQERSVSRMPNQCLGPESRKKSEKVLCKYFHSPNSSEDPQRAVTTETIKGLKPGTTYLF  275 (300)
T ss_pred             --CCC---ceEEEEEEEecCchhhhhhcccCccCCCCCccccceEEEEEEEcCCccccccccccceeecccCCCCcEEEE
Confidence              222   5788887654221                0    0  0000 01        11223457999999999999


Q ss_pred             EEEEEeCCCCCCCCccEEEeeC
Q psy15129        175 RVVAYTRAGLGPYSAPVTLVMD  196 (308)
Q Consensus       175 ~V~A~n~~G~G~~S~~v~~~T~  196 (308)
                      .|.|.-..|..-.-....+.|.
T Consensus       276 dV~~~~~~G~sl~Y~s~~VkTr  297 (300)
T PF10179_consen  276 DVYVNGPSGQSLPYRSKWVKTR  297 (300)
T ss_pred             EEEEecCCCceeecceEEEEec
Confidence            9999877666655555555553


No 23 
>PF01108 Tissue_fac:  Tissue factor; PDB: 3OG4_B 3OG6_B 1FYH_E 1FG9_D 1JRH_I 3DGC_R 3DLQ_R 1LQS_R 1Y6M_R 1J7V_R ....
Probab=96.88  E-value=0.0096  Score=45.50  Aligned_cols=77  Identities=26%  Similarity=0.359  Sum_probs=53.3

Q ss_pred             CCCCcceEEEEecCcEEEEEEeCCCCCCCCceeeEEEEEEEEcCCCceEEEE--EecCcccEEEEccCC--CCCeEEEEE
Q psy15129        101 SAAPEAMSAGVLNLTSAFVKWSPPPPQHHNGILLGYKIQVKAYNSTKILAQM--SLNASTTSVLLNNLT--SGAVYTARV  176 (308)
Q Consensus       101 ~~~P~~l~v~~~~~tsv~VsW~pP~~~~~~g~I~~Y~V~~~~~~~~~~~~~~--~~~~~~t~~~l~~L~--p~t~Y~v~V  176 (308)
                      ..+|.+|++... .....|+|++++.   ...-..|.|+|..... ..+..+  -.....+.+.|+...  +...|.++|
T Consensus        22 lp~P~nv~~~s~-nf~~iL~W~~~~~---~~~~~~ytVq~~~~~~-~~W~~v~~C~~i~~~~Cdlt~~~~~~~~~Y~~rV   96 (107)
T PF01108_consen   22 LPAPQNVTVDSV-NFKHILRWDPGPG---SPPNVTYTVQYKKYGS-SSWKDVPGCQNITETSCDLTDETSDPSESYYARV   96 (107)
T ss_dssp             GSSCEEEEEEEE-TTEEEEEEEESTT---SSSTEEEEEEEEESST-SCEEEECCEEEESSSEEECTTCCTTTTSEEEEEE
T ss_pred             CCCCCeeEEEEE-CCceEEEeCCCCC---CCCCeEEEEEEEecCC-cceeeccceecccccceeCcchhhcCcCCEEEEE
Confidence            345889998665 4568999999622   2244689999994333 334443  344566888887754  688999999


Q ss_pred             EEEeCC
Q psy15129        177 VAYTRA  182 (308)
Q Consensus       177 ~A~n~~  182 (308)
                      +|....
T Consensus        97 ~A~~~~  102 (107)
T PF01108_consen   97 RAEVGN  102 (107)
T ss_dssp             EEEETT
T ss_pred             EEEeCC
Confidence            998753


No 24 
>cd00063 FN3 Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all animal proteins contain the FN3 repeat; including extracellular and intracellular proteins, membrane spanning cytokine receptors, growth hormone receptors, tyrosine phosphatase receptors, and adhesion molecules. FN3-like domains are also found in bacterial glycosyl hydrolases.
Probab=96.79  E-value=0.0052  Score=43.71  Aligned_cols=72  Identities=17%  Similarity=0.128  Sum_probs=49.0

Q ss_pred             cccccccCCCCCCCcceeEEeeeeeccCCCCeeEeCCC--CcccceEecCcccCccCCCCeEEEEEEEEEECcccCCCCC
Q psy15129         12 DSRNYEDGRGNYEDSRGNYEDGRGKYEDGRNKYEDGRS--KYEDNRSCSGMRMGEINTKMGEVNTRIIEVVVGVIRQPSN   89 (308)
Q Consensus        12 ~~~~~~~~~~~~~~i~gy~i~wr~~~~~~~~~~~~~~~--~~~~~~~~~~L~pg~~~~p~T~Y~~~V~a~n~~G~g~~S~   89 (308)
                      -.+.|+........+.+|.|.|....   ...+.....  .......+.+|.|      .+.|.|+|.|.+..+.|.++.
T Consensus        17 ~~v~W~~~~~~~~~~~~y~v~~~~~~---~~~~~~~~~~~~~~~~~~i~~l~p------~~~Y~~~v~a~~~~~~~~~s~   87 (93)
T cd00063          17 VTLSWTPPEDDGGPITGYVVEYREKG---SGDWKEVEVTPGSETSYTLTGLKP------GTEYEFRVRAVNGGGESPPSE   87 (93)
T ss_pred             EEEEECCCCCCCCcceeEEEEEeeCC---CCCCEEeeccCCcccEEEEccccC------CCEEEEEEEEECCCccCCCcc
Confidence            35788877655456889999998653   222322222  2455667778888      679999999999888877665


Q ss_pred             cEE
Q psy15129         90 SML   92 (308)
Q Consensus        90 ~v~   92 (308)
                      ...
T Consensus        88 ~~~   90 (93)
T cd00063          88 SVT   90 (93)
T ss_pred             ccc
Confidence            333


No 25 
>KOG4152|consensus
Probab=96.55  E-value=0.0036  Score=59.49  Aligned_cols=63  Identities=33%  Similarity=0.453  Sum_probs=49.6

Q ss_pred             ccCCCCCeEEEEEEEEeCCCCCCCCccEEEeeC----CCCCCCccceeeecCEEEEEecCCCcCCCCC
Q psy15129        164 NNLTSGAVYTARVVAYTRAGLGPYSAPVTLVMD----PHAPPHALPSDILITHLVLIHSPIQVPGSDR  227 (308)
Q Consensus       164 ~~L~p~t~Y~v~V~A~n~~G~G~~S~~v~~~T~----p~~P~~~~~~~~~~tsv~vsW~pP~~~~~~~  227 (308)
                      ..|-+|+.|.|+|.|.|..|.|++|....+.|.    |.+|+.+.+. -+..-+.++|.||..++++.
T Consensus       652 ~~lv~Gq~yrfrV~aIng~G~gp~s~i~~~kTc~pG~P~apS~~ri~-k~~eGi~l~weppt~p~sg~  718 (830)
T KOG4152|consen  652 TSLVTGQAYRFRVTAINGKGPGPASTILKLKTCAPGKPTAPSGARIK-KTIEGISLVWEPPTKPGSGT  718 (830)
T ss_pred             cccccccceeeeeeeeeccCCCchhhheeeeeccCCCCCCccccccc-ccccceeecccCCCCCCCcc
Confidence            468899999999999999999999998888776    4445444433 23457899999999887554


No 26 
>COG4733 Phage-related protein, tail component [Function unknown]
Probab=95.57  E-value=0.1  Score=52.57  Aligned_cols=165  Identities=8%  Similarity=-0.065  Sum_probs=83.6

Q ss_pred             ccccccccccccCCCCCCCcceeEEeeeeeccCCCCeeEeCCCCcccceEecCcccCccCCCCeEEEEEEEEEECcccC-
Q psy15129          7 RGQYEDSRNYEDGRGNYEDSRGNYEDGRGKYEDGRNKYEDGRSKYEDNRSCSGMRMGEINTKMGEVNTRIIEVVVGVIR-   85 (308)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~i~gy~i~wr~~~~~~~~~~~~~~~~~~~~~~~~~L~pg~~~~p~T~Y~~~V~a~n~~G~g-   85 (308)
                      .++|++.-+|.-.+--.-.---+.+.|+.  +... .|............+.||-+|       +|.++|+|+|..|.. 
T Consensus       617 ~~~y~~qg~~~t~~vv~ge~f~~~~a~~a--~~~~-~~vta~rt~~~~~~~~gi~~G-------qY~i~VrAiN~~g~~~  686 (952)
T COG4733         617 SFLNLVQGLATTLLKVGGEAFLAAWAYEA--GWDG-NWITAPRTSAAGFDVEGIPAG-------QYAIRVRAINVFEPNS  686 (952)
T ss_pred             cchhhhhcccccceeecchHHHHHHHhhc--ccCC-ceEecccccccceeecCcCcc-------ceEEEEEEeeccCCCC
Confidence            46777776666444333322233333332  1222 444555555666677778764       899999999998874 


Q ss_pred             CCCCcEEEe-ccCCCCCCCCcceEEEEecCcEEEEEEeCCCCCCCCceeeEEEEEEEEcCCCceEEEEEecCcc--cEEE
Q psy15129         86 QPSNSMLVQ-SLEDVPSAAPEAMSAGVLNLTSAFVKWSPPPPQHHNGILLGYKIQVKAYNSTKILAQMSLNAST--TSVL  162 (308)
Q Consensus        86 ~~S~~v~~~-T~~~~P~~~P~~l~v~~~~~tsv~VsW~pP~~~~~~g~I~~Y~V~~~~~~~~~~~~~~~~~~~~--t~~~  162 (308)
                      ++.....++ ....+|+..+..+....+. -.+.+.|--|  . ..-.+..-.+++........  ....-++.  ....
T Consensus       687 ~~a~s~~f~i~g~~~Ppp~~~t~~a~~it-~~~~l~v~dP--t-~~~d~~~sei~~s~~~d~~~--~Ar~LG~~~~~~~~  760 (952)
T COG4733         687 PDATAYEFALNGKKVPPPKAMIYDAVIIT-LVIRLVVGDP--T-GAVDITSTEIRSAVIADGNF--QARSLGNLNYPGLF  760 (952)
T ss_pred             CCcceeEEEecCCCCCCCcccccceEEEE-eeeeEEEecC--C-cceEEeeeeeeeeccccchh--HHhhhhcccccccc
Confidence            443233332 2233343322222222222 2467788766  2 11122222233322111111  00011111  1111


Q ss_pred             EccCCCCCeEEEEEEEEeCCCCCCC
Q psy15129        163 LNNLTSGAVYTARVVAYTRAGLGPY  187 (308)
Q Consensus       163 l~~L~p~t~Y~v~V~A~n~~G~G~~  187 (308)
                      -.+|+|+..|.|+++++|..|...+
T Consensus       761 ~~~i~~g~~~~F~~R~Vn~vG~~~~  785 (952)
T COG4733         761 SVGIQAGLTFWFRNRNVDLVGNNDK  785 (952)
T ss_pred             ccCcCCCceEEEEeeeccccccccc
Confidence            1689999999999999999887544


No 27 
>smart00060 FN3 Fibronectin type 3 domain. One of three types of internal repeat within the plasma protein, fibronectin. The tenth fibronectin type III repeat contains a RGD cell recognition  sequence in a flexible loop between 2 strands. Type III modules are present in both extracellular and intracellular proteins.
Probab=95.21  E-value=0.076  Score=36.29  Aligned_cols=66  Identities=12%  Similarity=0.092  Sum_probs=41.2

Q ss_pred             ccccccccCCCCCCCcceeEEeeeeeccCCCCeeEeCC-CCcccceEecCcccCccCCCCeEEEEEEEEEECccc
Q psy15129         11 EDSRNYEDGRGNYEDSRGNYEDGRGKYEDGRNKYEDGR-SKYEDNRSCSGMRMGEINTKMGEVNTRIIEVVVGVI   84 (308)
Q Consensus        11 ~~~~~~~~~~~~~~~i~gy~i~wr~~~~~~~~~~~~~~-~~~~~~~~~~~L~pg~~~~p~T~Y~~~V~a~n~~G~   84 (308)
                      .-.+.|..+.....  .+|.+.|..........+.... ........+.+|.|      .+.|.|+|.|.+..|.
T Consensus        16 ~~~v~W~~~~~~~~--~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~~------~~~Y~v~v~a~~~~g~   82 (83)
T smart00060       16 SVTLSWEPPPDDGI--TGYIVGYRVEYREEGSSWKEVNVTPSSTSYTLTGLKP------GTEYEFRVRAVNGAGE   82 (83)
T ss_pred             EEEEEECCCCCCCC--CccEEEEEEEEecCCCccEEEEecCCccEEEEeCcCC------CCEEEEEEEEEcccCC
Confidence            34578885544443  7899988865433211222211 11145677788888      6799999999986543


No 28 
>KOG4367|consensus
Probab=94.66  E-value=0.016  Score=53.87  Aligned_cols=76  Identities=11%  Similarity=0.105  Sum_probs=64.1

Q ss_pred             ccccccCCCCCCCcceeEEeeeeeccCCCCeeEeCCCCcccceEecCcccCccCCCCeEEEEEEEEEECcccCCCCCcEE
Q psy15129         13 SRNYEDGRGNYEDSRGNYEDGRGKYEDGRNKYEDGRSKYEDNRSCSGMRMGEINTKMGEVNTRIIEVVVGVIRQPSNSML   92 (308)
Q Consensus        13 ~~~~~~~~~~~~~i~gy~i~wr~~~~~~~~~~~~~~~~~~~~~~~~~L~pg~~~~p~T~Y~~~V~a~n~~G~g~~S~~v~   92 (308)
                      -+.|..++-....++||.++-..-   .+....++..+..+.+++.||+-      ++.|.-+|.++|..|.++.|..+.
T Consensus       456 t~~wkqp~~~~~~~dg~~leld~g---~~g~frevy~g~etmctvdglhf------ns~y~arvka~n~tg~s~ys~tl~  526 (699)
T KOG4367|consen  456 TLSWKQPPLSTVPADGYILELDDG---NGGQFREVYVGKETMCTVDGLHF------NSTYNARVKAFNKTGVSPYSKTLV  526 (699)
T ss_pred             EEEeecCCCCCCCCcceEEEeecC---CCCceeEEEecCceeEEecceec------chhHHHHHHHhhccCCCcccceeE
Confidence            478999999999999999997532   33455667788888999999998      779999999999999999999888


Q ss_pred             EeccC
Q psy15129         93 VQSLE   97 (308)
Q Consensus        93 ~~T~~   97 (308)
                      ..|.+
T Consensus       527 lqts~  531 (699)
T KOG4367|consen  527 LQTSE  531 (699)
T ss_pred             eeecc
Confidence            87765


No 29 
>KOG3632|consensus
Probab=92.91  E-value=0.67  Score=47.79  Aligned_cols=123  Identities=19%  Similarity=0.222  Sum_probs=77.0

Q ss_pred             eEecCcccCccCCCCeEEEEEEEEEEC-cc--------cCCCCCcEEEeccCCCCCCCCcceEEEE-ecCcEEEEEEeCC
Q psy15129         55 RSCSGMRMGEINTKMGEVNTRIIEVVV-GV--------IRQPSNSMLVQSLEDVPSAAPEAMSAGV-LNLTSAFVKWSPP  124 (308)
Q Consensus        55 ~~~~~L~pg~~~~p~T~Y~~~V~a~n~-~G--------~g~~S~~v~~~T~~~~P~~~P~~l~v~~-~~~tsv~VsW~pP  124 (308)
                      +.+-+|+|      .|.|..+|.+.-. .+        .+.-...+.++|..+-|..||.+|++.. .++..+.|+|.||
T Consensus       720 ytf~~lrp------gt~y~a~vea~~p~q~pwdl~~v~~etr~atv~f~tLpAGppappldV~vE~g~spg~l~vswrPp  793 (1335)
T KOG3632|consen  720 YTFMRLRP------GTDYWASVEAALPRQEPWDLRMVPMETRQATVLFRTLPAGPPAPPLDVKVETGGSPGRLEVSWRPP  793 (1335)
T ss_pred             HHHhccCC------CCccceecccccCcCCCcccccchhhhhccceeeecccCCCCCCchheeeecCCCCceeeeeccCc
Confidence            34445776      6799999987654 11        1223456889999988999999998854 4678999999999


Q ss_pred             CCCC---CCc-eeeEEEEEEEEcCCCceEEEEEecCcccEEEEccCCCC-CeEEEEEEEEeCCCCCC
Q psy15129        125 PPQH---HNG-ILLGYKIQVKAYNSTKILAQMSLNASTTSVLLNNLTSG-AVYTARVVAYTRAGLGP  186 (308)
Q Consensus       125 ~~~~---~~g-~I~~Y~V~~~~~~~~~~~~~~~~~~~~t~~~l~~L~p~-t~Y~v~V~A~n~~G~G~  186 (308)
                      ..+.   .|| .+++|.|.....   .......-....+.+.+..|+-+ ..=.|.|+.....|.+.
T Consensus       794 tldsag~sngv~vtgYavyadgq---kv~Evafptagst~VelsQlq~~l~~~~V~vRtms~~gesv  857 (1335)
T KOG3632|consen  794 TLDSAGCSNGVAVTGYAVYADGQ---KVEEVAFPTAGSTKVELSQLQDGLYHGAVGVRTMSVPGESV  857 (1335)
T ss_pred             eeccccccCceeeeeeeeeeCCc---eeeeeecccCCceEEEeeeehhhheecceeEEecccCcccc
Confidence            5432   233 689999987521   11111222344556666666653 33345555555555443


No 30 
>PLN02533 probable purple acid phosphatase
Probab=92.20  E-value=2.2  Score=40.98  Aligned_cols=85  Identities=9%  Similarity=0.122  Sum_probs=50.5

Q ss_pred             CCCCcceEEEEecCcEEEEEEeCCCCCCCCceeeEEEEEEEEcCCCc----eEEEEE-------ecCcccEEEEccCCCC
Q psy15129        101 SAAPEAMSAGVLNLTSAFVKWSPPPPQHHNGILLGYKIQVKAYNSTK----ILAQMS-------LNASTTSVLLNNLTSG  169 (308)
Q Consensus       101 ~~~P~~l~v~~~~~tsv~VsW~pP~~~~~~g~I~~Y~V~~~~~~~~~----~~~~~~-------~~~~~t~~~l~~L~p~  169 (308)
                      ...|..+++.-..++++.|+|.-.  .... ..    |.|......-    ......       .++....+.|++|+|+
T Consensus        41 ~~~P~qvhls~~~~~~m~V~W~T~--~~~~-~~----V~yG~~~~~l~~~a~g~~~~~~~~~~~~~g~iH~v~l~~L~p~  113 (427)
T PLN02533         41 PTHPDQVHISLVGPDKMRISWITQ--DSIP-PS----VVYGTVSGKYEGSANGTSSSYHYLLIYRSGQINDVVIGPLKPN  113 (427)
T ss_pred             CCCCceEEEEEcCCCeEEEEEECC--CCCC-CE----EEEecCCCCCcceEEEEEEEEeccccccCCeEEEEEeCCCCCC
Confidence            344788888777889999999987  3222 22    4443211110    000000       1223356789999999


Q ss_pred             CeEEEEEEEEeCCCCCCCCccEEEeeCCC
Q psy15129        170 AVYTARVVAYTRAGLGPYSAPVTLVMDPH  198 (308)
Q Consensus       170 t~Y~v~V~A~n~~G~G~~S~~v~~~T~p~  198 (308)
                      |.|..+|.      ....|....+.|.|.
T Consensus       114 T~Y~Yrvg------~~~~s~~~~F~T~p~  136 (427)
T PLN02533        114 TVYYYKCG------GPSSTQEFSFRTPPS  136 (427)
T ss_pred             CEEEEEEC------CCCCccceEEECCCC
Confidence            99999983      122355567777654


No 31 
>COG3401 Fibronectin type 3 domain-containing protein [General function prediction only]
Probab=91.63  E-value=1.6  Score=39.93  Aligned_cols=179  Identities=20%  Similarity=0.092  Sum_probs=95.7

Q ss_pred             CCcceeEEeeeeeccCCCCeeEeCCCCcccceEecCcccCccCCCCeEEEEEEEEEECcccCCCCCcEEEecc--CCCCC
Q psy15129         24 EDSRGNYEDGRGKYEDGRNKYEDGRSKYEDNRSCSGMRMGEINTKMGEVNTRIIEVVVGVIRQPSNSMLVQSL--EDVPS  101 (308)
Q Consensus        24 ~~i~gy~i~wr~~~~~~~~~~~~~~~~~~~~~~~~~L~pg~~~~p~T~Y~~~V~a~n~~G~g~~S~~v~~~T~--~~~P~  101 (308)
                      ..|.||++--...... -...-.......+.+....|.+++      .|.+..-..+..-.+-.++...+.|.  +.++.
T Consensus         3 ~~~~~~~~~~t~~~~~-~~~i~~i~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~e~~~~~~~~i~~~~~   75 (343)
T COG3401           3 YDIDGFVLYRTKKDLK-LKRIGTIKNKYQTHYYDEGLEGEE------SYPYQEGTTKVDKISYDSERILVKTSFIERVRS   75 (343)
T ss_pred             ccceeEEEEEEcccch-hhhhhccccchhhhhhhccccccC------cceeeecccccceeeecCcceEEEeeecccccc
Confidence            4577777765433222 222223344455566666666643      45444444333333444555555554  22222


Q ss_pred             CCCcceEEEEecCcEEEEEEeCCCCCCCCceeeEEEEEEEEcCCCceEEEE--EecCcccEEEEccCCCCCeEEEEEEEE
Q psy15129        102 AAPEAMSAGVLNLTSAFVKWSPPPPQHHNGILLGYKIQVKAYNSTKILAQM--SLNASTTSVLLNNLTSGAVYTARVVAY  179 (308)
Q Consensus       102 ~~P~~l~v~~~~~tsv~VsW~pP~~~~~~g~I~~Y~V~~~~~~~~~~~~~~--~~~~~~t~~~l~~L~p~t~Y~v~V~A~  179 (308)
                           +...-.-+..+.+-|.|-|..    .+-.|.|+.... +.. ....  ....-.-.+.-.+|.++..|+..|.|.
T Consensus        76 -----~~~~~~~~~~~~~~w~~~~d~----~~~~Y~i~~~~g-D~~-f~r~~~~~n~l~~~~i~s~~~~~~~~~~~Iia~  144 (343)
T COG3401          76 -----VFASLERPKSVKVFWSPHPDV----SVGKYIIQRQNG-DGK-FLRTGLVKNRLFVEFIDSDLGHNEKYMELIIAA  144 (343)
T ss_pred             -----ccchhcCcceeeecccccCCC----CCCeEEEEEecC-chh-hhhhhHHHhccchhheecccccccceeeeEEee
Confidence                 222223456799999987432    344788887642 222 1111  112222234456899999999999999


Q ss_pred             eCCCCCCCCccEEEeeCCCCCCCcc---ceeeecCEEEEEecCC
Q psy15129        180 TRAGLGPYSAPVTLVMDPHAPPHAL---PSDILITHLVLIHSPI  220 (308)
Q Consensus       180 n~~G~G~~S~~v~~~T~p~~P~~~~---~~~~~~tsv~vsW~pP  220 (308)
                      +..+.-++|....--++...|+.+.   +.....+.+.|+|+-+
T Consensus       145 ~f~~~~sfsf~gVE~~~~~~P~ei~~~~~~~d~~~~i~ls~dg~  188 (343)
T COG3401         145 DFQMGKSFSFTGVEATPKAEPKEITNVRVSFDLGNNIELSEDGS  188 (343)
T ss_pred             cccccceeeeeeeecccccCCceeeeeeeecCCCCcceeeccCc
Confidence            8777655543222223334455443   3333467899999885


No 32 
>COG3401 Fibronectin type 3 domain-containing protein [General function prediction only]
Probab=91.60  E-value=3.6  Score=37.60  Aligned_cols=145  Identities=10%  Similarity=-0.016  Sum_probs=73.9

Q ss_pred             CCeEEEEEEEEEECcccCCCCCcEEEeccCCCCCCCCcceEEEEecCcEEEEEEeCCCCCCCCceeeEEEEEEEEcCCCc
Q psy15129         68 KMGEVNTRIIEVVVGVIRQPSNSMLVQSLEDVPSAAPEAMSAGVLNLTSAFVKWSPPPPQHHNGILLGYKIQVKAYNSTK  147 (308)
Q Consensus        68 p~T~Y~~~V~a~n~~G~g~~S~~v~~~T~~~~P~~~P~~l~v~~~~~tsv~VsW~pP~~~~~~g~I~~Y~V~~~~~~~~~  147 (308)
                      ++..|...|.+.+..+.-+.|....-.++...|.. -.++++.....+.+.|+|+.++.  .+    .|+|.-...+...
T Consensus       133 ~~~~~~~~Iia~~f~~~~sfsf~gVE~~~~~~P~e-i~~~~~~~d~~~~i~ls~dg~~~--~~----yy~IY~~~~g~e~  205 (343)
T COG3401         133 HNEKYMELIIAADFQMGKSFSFTGVEATPKAEPKE-ITNVRVSFDLGNNIELSEDGSEA--ED----YYRIYASDSGNEE  205 (343)
T ss_pred             cccceeeeEEeecccccceeeeeeeecccccCCce-eeeeeeecCCCCcceeeccCccc--cc----eEEEeccCCcccc
Confidence            46789999998876665333322222233333322 23444455567889999998732  22    7777665432222


Q ss_pred             eEEEEEecCcccEE--EEccCCCCCeEEEEEEEEeCCC-CCCCCccEEEeeCCCCCC--CccceeeecCEEEEEecCCCc
Q psy15129        148 ILAQMSLNASTTSV--LLNNLTSGAVYTARVVAYTRAG-LGPYSAPVTLVMDPHAPP--HALPSDILITHLVLIHSPIQV  222 (308)
Q Consensus       148 ~~~~~~~~~~~t~~--~l~~L~p~t~Y~v~V~A~n~~G-~G~~S~~v~~~T~p~~P~--~~~~~~~~~tsv~vsW~pP~~  222 (308)
                        .........+.+  ...+|  |..|...|.+....| .++.+...++-.--..|.  ...-.....+.+.|.|.+.+.
T Consensus       206 --~~~ia~t~~n~y~d~~egl--ga~~~y~VTtVd~~~~es~lp~~~t~~~~~g~~e~pt~~g~t~~~s~i~V~~E~~~~  281 (343)
T COG3401         206 --YGFIAQTTENSYYDVKEGL--GAVEYYKVTTVDNTGFESDLPNEPTVGETGGRYEVPTIPGETTEASFIGVAAEQNQL  281 (343)
T ss_pred             --ccceeeccccchhhhhhcc--CceeEEEEEEEcCCcceeccCCccccccccCCcccccCCCceeeeeeeeEEeccccc
Confidence              222223333333  33444  666777777776444 455555443322212211  111122234556788876644


Q ss_pred             C
Q psy15129        223 P  223 (308)
Q Consensus       223 ~  223 (308)
                      .
T Consensus       282 ~  282 (343)
T COG3401         282 R  282 (343)
T ss_pred             c
Confidence            3


No 33 
>PF09067 EpoR_lig-bind:  Erythropoietin receptor, ligand binding;  InterPro: IPR015152 Members of this entry include the growth hormone and erythropoietin receptors. The latter interacts with erythropoietin (EPO), with subsequent initiation of the downstream chain of events associated with binding of EPO to the receptor, including EPO-induced erythroblast proliferation and differentiation through induction of the JAK2/STAT5 signalling cascade. The domain adopts a secondary structure composed of a short amino-terminal helix, followed by two beta-sandwich regions []. ; PDB: 3NCB_B 3NCF_B 3NCE_B 3N0P_B 3NCC_B 1BP3_B 3N06_B 3MZG_B 3D48_R 1F6F_C ....
Probab=91.57  E-value=1.2  Score=33.87  Aligned_cols=79  Identities=15%  Similarity=0.143  Sum_probs=52.3

Q ss_pred             CCCCcceEEEEecCcEEEEEEeCCCCCCCCceeeEEEEEEEEcCCCceEEEEEe--cCcccE-----EEEc--cCCCCCe
Q psy15129        101 SAAPEAMSAGVLNLTSAFVKWSPPPPQHHNGILLGYKIQVKAYNSTKILAQMSL--NASTTS-----VLLN--NLTSGAV  171 (308)
Q Consensus       101 ~~~P~~l~v~~~~~tsv~VsW~pP~~~~~~g~I~~Y~V~~~~~~~~~~~~~~~~--~~~~t~-----~~l~--~L~p~t~  171 (308)
                      +.-|.++...+.....++--|++.  ...+.. ..|.+.|...+  ..+..-..  .....+     +.+.  +..-.+.
T Consensus         8 p~~P~~~~C~S~~~etftC~W~~g--~~~~l~-~~y~L~Y~~~~--~~~~eCp~~~~~~~ns~~~~~C~F~~~~t~lf~~   82 (104)
T PF09067_consen    8 PEKPENLKCFSREMETFTCFWEPG--SEGNLP-TNYTLFYKKEG--EEWKECPDYSTSGPNSTVRHICYFPKSDTSLFVP   82 (104)
T ss_dssp             CCCCEEEEEEBSSSS-EEEEEEEE--SSSTST-CEEEEEEEETT--SEEEEESESSTTETTEEEEEEEEE-CCGCSSSSE
T ss_pred             CCCCccCccCCCCCCcEEEEeeCC--CCCCCC-CcEEEEEEeCC--CCCccCCCeEecCCCCceeEEEEcCCCCeEEEEE
Confidence            344789998888889999999998  444422 34999999855  22332211  122233     4454  7788899


Q ss_pred             EEEEEEEEeCCCC
Q psy15129        172 YTARVVAYTRAGL  184 (308)
Q Consensus       172 Y~v~V~A~n~~G~  184 (308)
                      |.|+|.|.|..|.
T Consensus        83 y~i~V~a~~~~~~   95 (104)
T PF09067_consen   83 YCIQVEATNALGS   95 (104)
T ss_dssp             EEEEEEEEETTEE
T ss_pred             EEEEEEeccCCCc
Confidence            9999999997653


No 34 
>PF07495 Y_Y_Y:  Y_Y_Y domain;  InterPro: IPR011123 This region is mostly found at the end of the beta propellers (IPR011110 from INTERPRO) in a family of two component regulators. However they are also found tandemly repeated in Q891H4 from SWISSPROT without other signal conduction domains being present. It is named after the conserved tyrosines found in the alignment. The exact function is not known.; PDB: 3V9F_D 3VA6_B 3OTT_B 4A2M_D 4A2L_B.
Probab=90.46  E-value=1.5  Score=29.73  Aligned_cols=27  Identities=33%  Similarity=0.336  Sum_probs=20.6

Q ss_pred             EEEEccCCCCCeEEEEEEEEeCCCCCCC
Q psy15129        160 SVLLNNLTSGAVYTARVVAYTRAGLGPY  187 (308)
Q Consensus       160 ~~~l~~L~p~t~Y~v~V~A~n~~G~G~~  187 (308)
                      .+.+.+|.|| .|.|.|+|.+..|.-..
T Consensus        30 ~~~~~~L~~G-~Y~l~V~a~~~~~~~~~   56 (66)
T PF07495_consen   30 SISYTNLPPG-KYTLEVRAKDNNGKWSS   56 (66)
T ss_dssp             EEEEES--SE-EEEEEEEEEETTS-B-S
T ss_pred             EEEEEeCCCE-EEEEEEEEECCCCCcCc
Confidence            8999999999 99999999998776543


No 35 
>KOG4228|consensus
Probab=85.75  E-value=0.87  Score=47.67  Aligned_cols=97  Identities=20%  Similarity=0.194  Sum_probs=66.6

Q ss_pred             EEEECcccCCCCCcEEEeccCCCCCCCCcceEEEEecCcEEEEEEeCCCCCCCCceeeEEEEEEEEcCCCceEEEEEecC
Q psy15129         77 IEVVVGVIRQPSNSMLVQSLEDVPSAAPEAMSAGVLNLTSAFVKWSPPPPQHHNGILLGYKIQVKAYNSTKILAQMSLNA  156 (308)
Q Consensus        77 ~a~n~~G~g~~S~~v~~~T~~~~P~~~P~~l~v~~~~~tsv~VsW~pP~~~~~~g~I~~Y~V~~~~~~~~~~~~~~~~~~  156 (308)
                      .+.|..+.+.++.++..++.+..+...++...+.......+.++|..+  ....+                         
T Consensus        91 ~evnt~~~a~~~~~~~~rt~~~~~~~~~~~~~~~~~~a~~~~~~~~~~--~~~~~-------------------------  143 (1087)
T KOG4228|consen   91 VEVNTIGRAPFQCPVAPRTGEQATLSLQRDVQALMLSAATAHVNWRRF--SATVG-------------------------  143 (1087)
T ss_pred             hhcccccccccccccCCccccccccccccchhhhhhhhhhhccCcccc--ccccc-------------------------
Confidence            677777777777777777777666665666555555666666777665  11111                         


Q ss_pred             cccEEEEccCCCCCeEEEEEEEEeCCCCCCCCccEEEeeCCCCCCCccceeeecCEEEEEecCC
Q psy15129        157 STTSVLLNNLTSGAVYTARVVAYTRAGLGPYSAPVTLVMDPHAPPHALPSDILITHLVLIHSPI  220 (308)
Q Consensus       157 ~~t~~~l~~L~p~t~Y~v~V~A~n~~G~G~~S~~v~~~T~p~~P~~~~~~~~~~tsv~vsW~pP  220 (308)
                                         +.+.+..|.++.+..+.+++.+..|.... .....+.++++|.+|
T Consensus       144 -------------------~~~~~~~~~~~~~t~i~i~~~~~~p~~~~-~~~~~~~it~~w~~~  187 (1087)
T KOG4228|consen  144 -------------------PLAIASPGLGPPSTYIQITTNANSPIQPG-EEEEYTTITGSWSPP  187 (1087)
T ss_pred             -------------------ccccCCcccCCCCceEEEeccCCCCCCCC-cceEEEEEEecCCCC
Confidence                               66777777777777777777766665555 666778999999888


No 36 
>PF09294 Interfer-bind:  Interferon-alpha/beta receptor, fibronectin type III;  InterPro: IPR015373 Members of this family adopt a secondary structure consisting of seven beta-strands arranged in an immunoglobulin-like beta-sandwich, in a Greek-key topology. They are required for binding to interferon-alpha []. ; PDB: 1A21_A 3LQM_B 3ELA_T 1AHW_C 2A2Q_T 1TFH_B 1FAK_T 1WSS_T 1W2K_T 2FIR_T ....
Probab=81.83  E-value=2.1  Score=32.05  Aligned_cols=58  Identities=7%  Similarity=-0.037  Sum_probs=31.8

Q ss_pred             eEEeeeeeccCCCCeeEeCCCCcccceEecCcccCccCCCCeEEEEEEEEEECc--ccCCCCCcEEEec
Q psy15129         29 NYEDGRGKYEDGRNKYEDGRSKYEDNRSCSGMRMGEINTKMGEVNTRIIEVVVG--VIRQPSNSMLVQS   95 (308)
Q Consensus        29 y~i~wr~~~~~~~~~~~~~~~~~~~~~~~~~L~pg~~~~p~T~Y~~~V~a~n~~--G~g~~S~~v~~~T   95 (308)
                      |.|.++.....   ..............+.+|.|      .++|-|+|.+....  ..|.+|....+.|
T Consensus        46 Y~v~~~~~~~~---~~~~~~~~~~~~~~l~~L~p------~t~YCv~V~~~~~~~~~~s~~S~~~C~~t  105 (106)
T PF09294_consen   46 YNVSYWKNGSN---EKKKEIETKNSSVTLSDLKP------GTNYCVSVQAFSPSQNKNSQPSEPQCITT  105 (106)
T ss_dssp             EEEEEEETTTS---CEEEEEESSSEEEEEES--T------TSEEEEEEEEEECSSTEEEEEBSEEEEE-
T ss_pred             EEEEEEeCCCc---cceEEEeecCCEEEEeCCCC------CCCEEEEEEEEeccCCCcCCCCCCEeEeC
Confidence            77775543322   12222333444557888988      67999999994322  2366776655554


No 37 
>KOG4228|consensus
Probab=74.92  E-value=5  Score=42.30  Aligned_cols=137  Identities=13%  Similarity=0.081  Sum_probs=85.8

Q ss_pred             EEEEEEEECcccCCCCCcEEEeccCCCCCCCCcceEEEEecCcEEEEEEeCCCCCCCCceeeEEEEEEEEcCCCceEEEE
Q psy15129         73 NTRIIEVVVGVIRQPSNSMLVQSLEDVPSAAPEAMSAGVLNLTSAFVKWSPPPPQHHNGILLGYKIQVKAYNSTKILAQM  152 (308)
Q Consensus        73 ~~~V~a~n~~G~g~~S~~v~~~T~~~~P~~~P~~l~v~~~~~tsv~VsW~pP~~~~~~g~I~~Y~V~~~~~~~~~~~~~~  152 (308)
                      .+.+.+.+..+.++++..+.+.|.+..|..++     .....++++++|.+|+    ...+..|++.+.... .. ....
T Consensus       141 ~~~~~~~~~~~~~~~~t~i~i~~~~~~p~~~~-----~~~~~~~it~~w~~~~----~~~~~~ykl~~~~~d-~~-~~~~  209 (1087)
T KOG4228|consen  141 TVGPLAIASPGLGPPSTYIQITTNANSPIQPG-----EEEEYTTITGSWSPPH----AVSLDTYKLLHLDPD-TG-YEIS  209 (1087)
T ss_pred             cccccccCCcccCCCCceEEEeccCCCCCCCC-----cceEEEEEEecCCCCC----cccchhhhhhhcCCc-cc-ceee
Confidence            44466777777777777788888888887754     4556778999999884    345778888877542 22 1222


Q ss_pred             EecCcccEEEEccCCCCCeEEEEEEEEeCCCCCCCCccEEEeeCCCC-CCCccceeeecCEEEEEecCC
Q psy15129        153 SLNASTTSVLLNNLTSGAVYTARVVAYTRAGLGPYSAPVTLVMDPHA-PPHALPSDILITHLVLIHSPI  220 (308)
Q Consensus       153 ~~~~~~t~~~l~~L~p~t~Y~v~V~A~n~~G~G~~S~~v~~~T~p~~-P~~~~~~~~~~tsv~vsW~pP  220 (308)
                      .......+....+|.|-..+.++..+....+.+.....+...+..++ .-++....+..+.+..+|..+
T Consensus       210 v~~~~~~~~~t~~~~~~~~~~~~~ae~~~~~~~~~~a~i~~r~~~s~~~~~~~~~~~~~~~~~~t~~~~  278 (1087)
T KOG4228|consen  210 VTLTPPGSGGTGDLGPPSISRFKCAEPDRGPLGSSTAEIEARQLQSVSKKNFETKHVFKNLVPGTWESF  278 (1087)
T ss_pred             eeccCCCCCcccCCCCcccccccccCccccccCCCCcceEEEehhhhhccccccceeecccCCceeeee
Confidence            33334444555678888888888888877766666665655544332 122333334444555555544


No 38 
>PF14292 SusE:  SusE outer membrane protein
Probab=74.35  E-value=38  Score=26.14  Aligned_cols=70  Identities=13%  Similarity=0.138  Sum_probs=39.5

Q ss_pred             eEEEEecCcEEEEEEeCCCCCCCCc-eeeEEEEEEEEcCCC-ceEEEEEecC-cccEEEEc-----------cCCCCCeE
Q psy15129        107 MSAGVLNLTSAFVKWSPPPPQHHNG-ILLGYKIQVKAYNST-KILAQMSLNA-STTSVLLN-----------NLTSGAVY  172 (308)
Q Consensus       107 l~v~~~~~tsv~VsW~pP~~~~~~g-~I~~Y~V~~~~~~~~-~~~~~~~~~~-~~t~~~l~-----------~L~p~t~Y  172 (308)
                      +.....+...++++|+++  ..... ....|.|++...+.. .......... ..++..++           ++.|+...
T Consensus        37 i~L~~~~~~a~tftW~~~--~~~~~~a~v~Y~lq~~~~~~~F~~~~~~~~~~~~~~s~~~t~~eLN~~l~~~g~~~~~~~  114 (122)
T PF14292_consen   37 IVLDEASDNAVTFTWTAA--DYGGPDAPVTYTLQFDKKGNDFSSPVEIVTTDNGSTSVSITVKELNSILLKLGLEPGEAG  114 (122)
T ss_pred             EEecccCCceEEEEEECC--ccCCCCCceEEEEEEeccCCCccCcEEEEeecCcceeEEecHHHHHHHHHHcCCCCCceE
Confidence            333334556899999998  44333 556899998764321 1111111111 13444443           57888888


Q ss_pred             EEEEEE
Q psy15129        173 TARVVA  178 (308)
Q Consensus       173 ~v~V~A  178 (308)
                      .+.++.
T Consensus       115 ~l~~rV  120 (122)
T PF14292_consen  115 TLYWRV  120 (122)
T ss_pred             EEEEEE
Confidence            777764


No 39 
>PF09240 IL6Ra-bind:  Interleukin-6 receptor alpha chain, binding;  InterPro: IPR015321 Members of this entry adopt a structure consisting of an immunoglobulin-like beta-sandwich, with seven strands in two beta-sheets, in a Greek-key topology. They are required for binding to the cytokine Interleukin-6 []. ; PDB: 1N26_A 1P9M_C 3LB6_C 1PVH_A 3L5H_A 1BQU_A 1I1R_A 3QT2_B 3BPN_C 3BPO_C ....
Probab=73.80  E-value=33  Score=25.30  Aligned_cols=80  Identities=15%  Similarity=0.063  Sum_probs=52.3

Q ss_pred             CcceEEEEecCcEEEEEEeCCCCCCCCceeeEEEEEEEEcCCCceEEE--EEec-CcccEEEEccCCC----CCeEEEEE
Q psy15129        104 PEAMSAGVLNLTSAFVKWSPPPPQHHNGILLGYKIQVKAYNSTKILAQ--MSLN-ASTTSVLLNNLTS----GAVYTARV  176 (308)
Q Consensus       104 P~~l~v~~~~~tsv~VsW~pP~~~~~~g~I~~Y~V~~~~~~~~~~~~~--~~~~-~~~t~~~l~~L~p----~t~Y~v~V  176 (308)
                      |.+|...-.+...|.-+|.+-..  .. .-+.|.+.|+..........  .... +....+.+..+..    ...|.|.|
T Consensus         2 ~~nlsC~~~~~~~m~CtW~~g~~--~~-~~t~y~L~~~~~~~~~~~eC~~y~~~~~~~~gC~~~~~~~~~~~~~~~~v~V   78 (99)
T PF09240_consen    2 PQNLSCFIYNLEYMNCTWEPGKE--AP-PDTQYTLYYWYSPLEEEKECPHYSKDSGTRIGCQFPVSEIDSSEFSQYNVCV   78 (99)
T ss_dssp             -EEEEEEEETTTEEEEEEECCTT--CS-TTEEEEEEEEETTSSSEEEESEEEESTSSEEEEEEESCTT-TTTTSEEEEEE
T ss_pred             CeeCEEEEECCEEEEEEECCCCC--CC-CcccEEEEEEcCCCCccccCCCccccCCceeEEEecCCCccccccceEEEEE
Confidence            57888888889999999987521  11 23589999998653333222  1222 3356677766655    34899999


Q ss_pred             EEEeCCCCCC
Q psy15129        177 VAYTRAGLGP  186 (308)
Q Consensus       177 ~A~n~~G~G~  186 (308)
                      .+.+..|.-.
T Consensus        79 ~~ss~~~~i~   88 (99)
T PF09240_consen   79 NGSSSAGSIR   88 (99)
T ss_dssp             EEEETTEEEE
T ss_pred             EeccCCCccC
Confidence            9998776543


No 40 
>PF07495 Y_Y_Y:  Y_Y_Y domain;  InterPro: IPR011123 This region is mostly found at the end of the beta propellers (IPR011110 from INTERPRO) in a family of two component regulators. However they are also found tandemly repeated in Q891H4 from SWISSPROT without other signal conduction domains being present. It is named after the conserved tyrosines found in the alignment. The exact function is not known.; PDB: 3V9F_D 3VA6_B 3OTT_B 4A2M_D 4A2L_B.
Probab=73.13  E-value=15  Score=24.66  Aligned_cols=36  Identities=8%  Similarity=-0.056  Sum_probs=22.5

Q ss_pred             CeeEeCCCCcccceEecCcccCccCCCCeEEEEEEEEEECcccC
Q psy15129         42 NKYEDGRSKYEDNRSCSGMRMGEINTKMGEVNTRIIEVVVGVIR   85 (308)
Q Consensus        42 ~~~~~~~~~~~~~~~~~~L~pg~~~~p~T~Y~~~V~a~n~~G~g   85 (308)
                      ..|........ ....++|.||       .|+|.|+|.+..|.-
T Consensus        19 ~~W~~~~~~~~-~~~~~~L~~G-------~Y~l~V~a~~~~~~~   54 (66)
T PF07495_consen   19 DEWITLGSYSN-SISYTNLPPG-------KYTLEVRAKDNNGKW   54 (66)
T ss_dssp             SSEEEESSTS--EEEEES--SE-------EEEEEEEEEETTS-B
T ss_pred             CeEEECCCCcE-EEEEEeCCCE-------EEEEEEEEECCCCCc
Confidence            45544433322 6777888876       899999999987653


No 41 
>TIGR00868 hCaCC calcium-activated chloride channel protein 1. distributions. found a row in 1A13.INFO that was not parsed out
Probab=72.41  E-value=15  Score=38.46  Aligned_cols=79  Identities=15%  Similarity=0.222  Sum_probs=47.2

Q ss_pred             cceEEEEecCcEEEEEEeCCCCCCCCceeeEEEEEEEEcCCC---ceEEEEE------e---cCcccEEEE--cc--CCC
Q psy15129        105 EAMSAGVLNLTSAFVKWSPPPPQHHNGILLGYKIQVKAYNST---KILAQMS------L---NASTTSVLL--NN--LTS  168 (308)
Q Consensus       105 ~~l~v~~~~~tsv~VsW~pP~~~~~~g~I~~Y~V~~~~~~~~---~~~~~~~------~---~~~~t~~~l--~~--L~p  168 (308)
                      .+|++ ......|.|+|..|-.+...|....|.|++...-..   .......      +   .++...+++  .+  .+.
T Consensus       760 tDL~~-~~~~~~v~LsWTAPG~d~D~G~a~~y~ir~s~~~~~l~~~f~~a~~vn~~~~~P~~ags~e~~~f~~~~~~~~~  838 (863)
T TIGR00868       760 TDLEA-GFQGDNIILTWTAPGDVLDHGRADRYIIRISTSILDLRDDFNDATQVNTTDLIPKEANSKEVFVFKPEGIPIEN  838 (863)
T ss_pred             eeeEE-eecCCEEEEEeeCCCccCCCCccceEEEEecCCHHHHHhhhccccccccCCcCCCCCCceeEEEEeCCcccccC
Confidence            34444 345556999999996666788999999999653000   0000000      0   112223333  33  235


Q ss_pred             CCeEEEEEEEEeCCCC
Q psy15129        169 GAVYTARVVAYTRAGL  184 (308)
Q Consensus       169 ~t~Y~v~V~A~n~~G~  184 (308)
                      ++.|.|-|+|++..|.
T Consensus       839 ~~~~~~ai~a~d~~~~  854 (863)
T TIGR00868       839 GTDLFIAVQAIDKANL  854 (863)
T ss_pred             CeEEEEEEEEEccccc
Confidence            7789999999998764


No 42 
>KOG1225|consensus
Probab=70.78  E-value=9.1  Score=37.55  Aligned_cols=109  Identities=13%  Similarity=0.004  Sum_probs=67.7

Q ss_pred             CcccceEecCcccCccCCCCeEEEEEEEEEECc-ccCCCCCcEEEeccCCCCCCCCcceEEEEecCcEEEEEEeCCCCCC
Q psy15129         50 KYEDNRSCSGMRMGEINTKMGEVNTRIIEVVVG-VIRQPSNSMLVQSLEDVPSAAPEAMSAGVLNLTSAFVKWSPPPPQH  128 (308)
Q Consensus        50 ~~~~~~~~~~L~pg~~~~p~T~Y~~~V~a~n~~-G~g~~S~~v~~~T~~~~P~~~P~~l~v~~~~~tsv~VsW~pP~~~~  128 (308)
                      .......+..|.|      .+.|.++|.++... +..+.....  .+...    .|..+.+.....+++.+.|..|..  
T Consensus       415 ~~~~~~~~~~~~~------g~~~~~~~~~v~~~~~~~~~~~~~--~~~~~----~~g~~~v~~~~~~s~e~~g~~~s~--  480 (525)
T KOG1225|consen  415 GDANSVDIQGLEP------GDEYNCSVNTVAANIGSLPKDKSE--TTVLC----WNGGLCVDGETESSLEVGGPCPSS--  480 (525)
T ss_pred             cceeeeeeeeecC------CcceeeehhhhhhhhccCCccccc--ceEee----cCCceeeeeeeeccccccCCCCCc--
Confidence            3344555566677      45999999887543 333433322  22222    256778888899999999998832  


Q ss_pred             CCceeeEEEEEEEEcCCCceEEEEEecCcccEEEEccCCCCCeEEEEE
Q psy15129        129 HNGILLGYKIQVKAYNSTKILAQMSLNASTTSVLLNNLTSGAVYTARV  176 (308)
Q Consensus       129 ~~g~I~~Y~V~~~~~~~~~~~~~~~~~~~~t~~~l~~L~p~t~Y~v~V  176 (308)
                         ...++.+.|.... .+...........+.+...+|.|.+.|.+.+
T Consensus       481 ---~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~c~~~~~~~  524 (525)
T KOG1225|consen  481 ---GTCGWEVRCGPCG-NDGGVNAEPPPECTSYDRTGLGPCTEYEVSV  524 (525)
T ss_pred             ---cccceEEEeeecC-cccccccCCCCCCCCCCccCcccccceeccc
Confidence               3346667773322 2211122333467788899999999998865


No 43 
>KOG4806|consensus
Probab=66.63  E-value=25  Score=32.56  Aligned_cols=118  Identities=16%  Similarity=0.157  Sum_probs=63.1

Q ss_pred             EEEEEEEEEECcccCCCCCcEEEe---ccCCCCCCCCcceEEEE--ecCcEEEEEEeCCCCCCCCceeeEEEEEEEEcCC
Q psy15129         71 EVNTRIIEVVVGVIRQPSNSMLVQ---SLEDVPSAAPEAMSAGV--LNLTSAFVKWSPPPPQHHNGILLGYKIQVKAYNS  145 (308)
Q Consensus        71 ~Y~~~V~a~n~~G~g~~S~~v~~~---T~~~~P~~~P~~l~v~~--~~~tsv~VsW~pP~~~~~~g~I~~Y~V~~~~~~~  145 (308)
                      .|..++...|..-. +---.+...   |..+.|.- |.+-++..  ..-++.+|.|.-.+.+     -..|.|.......
T Consensus       296 ~~~~rf~~~ndde~-~~~v~V~aSt~~t~~~~P~L-P~dTtVk~v~r~CSsAtIaW~gs~d~-----~~kyCIy~~~~~~  368 (454)
T KOG4806|consen  296 RYLMRFEPSNDDEA-LQKVMVAASTEATFRDLPEL-PQDTTVKNVRRRCSSATIAWNGSPDE-----ELKYCIYVFNLPQ  368 (454)
T ss_pred             ceEEEEEecCCchh-hheeEeeeecccccCcCCCC-CCCceEeeeccccchheeeeccCcch-----heeEEEEEecccc
Confidence            56666666665322 100111111   22344544 56665544  4566899999876432     2356665543211


Q ss_pred             Cc-----------------eEEEE-----------EecCcccEEEEccCCCCCeEEEEEEEEeCCCCCCCCccEEEee
Q psy15129        146 TK-----------------ILAQM-----------SLNASTTSVLLNNLTSGAVYTARVVAYTRAGLGPYSAPVTLVM  195 (308)
Q Consensus       146 ~~-----------------~~~~~-----------~~~~~~t~~~l~~L~p~t~Y~v~V~A~n~~G~G~~S~~v~~~T  195 (308)
                      .+                 ....+           ...-+...-+|.||.|+..|.+.|.|.-..|...+-..+.+.|
T Consensus       369 ~e~~v~~~~N~C~g~~~~~~s~~v~c~y~hs~~~q~~~~~i~teTI~gL~PgssYlldv~a~~~~g~~lpyqa~~v~t  446 (454)
T KOG4806|consen  369 RERSVVDFTNYCMGFVPKRVSQYVYCEYMHSRERQQSPDNIETETILGLMPGSSYLLDVTANLSMGKPLPYQALTVHT  446 (454)
T ss_pred             hhhhhhhhhccccCccccceeEEEeEEEecChhhhcchhhhhhhhhcccccCceEEEEEEEcccCCccccceeEEEEe
Confidence            00                 00000           0011223446889999999999999988777655544455544


No 44 
>KOG4806|consensus
Probab=60.54  E-value=1.5e+02  Score=27.72  Aligned_cols=55  Identities=11%  Similarity=0.087  Sum_probs=32.2

Q ss_pred             cCCCCCeEEEEEEEEeCCCCCCCCccEEEee------CCCCCCCccceee--ecCEEEEEecCC
Q psy15129        165 NLTSGAVYTARVVAYTRAGLGPYSAPVTLVM------DPHAPPHALPSDI--LITHLVLIHSPI  220 (308)
Q Consensus       165 ~L~p~t~Y~v~V~A~n~~G~G~~S~~v~~~T------~p~~P~~~~~~~~--~~tsv~vsW~pP  220 (308)
                      .+.|+..|..++...|..- ++.-..+...|      -|..|.+-.+..+  ..++.+|.|.-.
T Consensus       290 vv~~~~~~~~rf~~~ndde-~~~~v~V~aSt~~t~~~~P~LP~dTtVk~v~r~CSsAtIaW~gs  352 (454)
T KOG4806|consen  290 VVLPGERYLMRFEPSNDDE-ALQKVMVAASTEATFRDLPELPQDTTVKNVRRRCSSATIAWNGS  352 (454)
T ss_pred             EecCCCceEEEEEecCCch-hhheeEeeeecccccCcCCCCCCCceEeeeccccchheeeeccC
Confidence            4577778888888877532 22111122222      2566766555544  467899999643


No 45 
>PF01108 Tissue_fac:  Tissue factor; PDB: 3OG4_B 3OG6_B 1FYH_E 1FG9_D 1JRH_I 3DGC_R 3DLQ_R 1LQS_R 1Y6M_R 1J7V_R ....
Probab=58.71  E-value=18  Score=27.23  Aligned_cols=68  Identities=10%  Similarity=0.071  Sum_probs=39.1

Q ss_pred             ccccccccCCCCCCCcceeEEeeeeeccCCCCeeEeC---CCCcccceEecCcccCccCCCCeEEEEEEEEEECcccCC
Q psy15129         11 EDSRNYEDGRGNYEDSRGNYEDGRGKYEDGRNKYEDG---RSKYEDNRSCSGMRMGEINTKMGEVNTRIIEVVVGVIRQ   86 (308)
Q Consensus        11 ~~~~~~~~~~~~~~~i~gy~i~wr~~~~~~~~~~~~~---~~~~~~~~~~~~L~pg~~~~p~T~Y~~~V~a~n~~G~g~   86 (308)
                      .--+.|+-+.... .---|.++++   ..+...|.+.   .......+.+++...    .++..|.++|+|..+...|.
T Consensus        36 ~~iL~W~~~~~~~-~~~~ytVq~~---~~~~~~W~~v~~C~~i~~~~Cdlt~~~~----~~~~~Y~~rV~A~~~~~~S~  106 (107)
T PF01108_consen   36 KHILRWDPGPGSP-PNVTYTVQYK---KYGSSSWKDVPGCQNITETSCDLTDETS----DPSESYYARVRAEVGNQTSD  106 (107)
T ss_dssp             EEEEEEEESTTSS-STEEEEEEEE---ESSTSCEEEECCEEEESSSEEECTTCCT----TTTSEEEEEEEEEETTEEEE
T ss_pred             ceEEEeCCCCCCC-CCeEEEEEEE---ecCCcceeeccceecccccceeCcchhh----cCcCCEEEEEEEEeCCccCC
Confidence            3456677644444 3456888887   2233345443   223334555554332    24779999999998765543


No 46 
>PF13754 Big_3_4:  Bacterial Ig-like domain (group 3)
Probab=55.29  E-value=49  Score=21.56  Aligned_cols=33  Identities=30%  Similarity=0.332  Sum_probs=22.6

Q ss_pred             EEEccCCCCCeEEEEEEEEeCCCCCCCCccEEEe
Q psy15129        161 VLLNNLTSGAVYTARVVAYTRAGLGPYSAPVTLV  194 (308)
Q Consensus       161 ~~l~~L~p~t~Y~v~V~A~n~~G~G~~S~~v~~~  194 (308)
                      +.+..+ ..-.|.|.|.|.+.+|.........+.
T Consensus        16 ~t~~~~-~dG~y~itv~a~D~AGN~s~~~~~~~t   48 (54)
T PF13754_consen   16 FTVPAL-ADGTYTITVTATDAAGNTSTSSSVTFT   48 (54)
T ss_pred             EeCCCC-CCccEEEEEEEEeCCCCCCCccceeEE
Confidence            344455 567999999999999976554333333


No 47 
>KOG1948|consensus
Probab=55.01  E-value=1e+02  Score=32.21  Aligned_cols=23  Identities=17%  Similarity=0.329  Sum_probs=20.4

Q ss_pred             ccEEEEccCCCCCeEEEEEEEEe
Q psy15129        158 TTSVLLNNLTSGAVYTARVVAYT  180 (308)
Q Consensus       158 ~t~~~l~~L~p~t~Y~v~V~A~n  180 (308)
                      .-.+.|.+|.|++.|.|+|.+.-
T Consensus       945 nG~yRiRGL~Pdc~Y~V~vk~~~  967 (1165)
T KOG1948|consen  945 NGTYRIRGLLPDCEYQVHVKSYA  967 (1165)
T ss_pred             CCcEEEeccCCCceEEEEEeecc
Confidence            35789999999999999999883


No 48 
>KOG1948|consensus
Probab=46.04  E-value=3.9e+02  Score=28.30  Aligned_cols=114  Identities=15%  Similarity=0.091  Sum_probs=52.7

Q ss_pred             ccceEecCcccCccCCCCeEEEEEEEEEE--Cccc-C-CCCCcEEEeccCCCCCCCCcceEEEEecCcEEEEEEeCCCCC
Q psy15129         52 EDNRSCSGMRMGEINTKMGEVNTRIIEVV--VGVI-R-QPSNSMLVQSLEDVPSAAPEAMSAGVLNLTSAFVKWSPPPPQ  127 (308)
Q Consensus        52 ~~~~~~~~L~pg~~~~p~T~Y~~~V~a~n--~~G~-g-~~S~~v~~~T~~~~P~~~P~~l~v~~~~~tsv~VsW~pP~~~  127 (308)
                      .-.+.+.||+|      .+.|+++|.+.-  +.-+ + |.+..+.+ ..+++-.   .++.+. .......|+=.--  .
T Consensus       945 nG~yRiRGL~P------dc~Y~V~vk~~~~n~~iers~P~s~tv~v-gneDv~g---lnf~af-~q~kttdit~~V~--~ 1011 (1165)
T KOG1948|consen  945 NGTYRIRGLLP------DCEYQVHVKSYADNSPIERSFPRSFTVSV-GNEDVKG---LNFMAF-IQAKTTDITVEVG--M 1011 (1165)
T ss_pred             CCcEEEeccCC------CceEEEEEeeccCCCcccccCCceEEEEe-cccccCC---ceEEEE-eccceEEEEEEEc--c
Confidence            34678899998      559999999873  3222 1 22222221 2233321   133221 1222222222222  2


Q ss_pred             CCCceeeEEE-EEEEEcCCCceEEEEEecCcccEEEEccCCCCCeEEEEEEEE
Q psy15129        128 HHNGILLGYK-IQVKAYNSTKILAQMSLNASTTSVLLNNLTSGAVYTARVVAY  179 (308)
Q Consensus       128 ~~~g~I~~Y~-V~~~~~~~~~~~~~~~~~~~~t~~~l~~L~p~t~Y~v~V~A~  179 (308)
                      ..|..+..-+ |.|+..+....... ...+....+...-+.++..|.|++.+.
T Consensus      1012 ~~ne~l~sl~vv~yKs~nddspv~s-v~~gql~~ffp~l~~dg~~yvV~l~St 1063 (1165)
T KOG1948|consen 1012 DTNEELQSLRVVIYKSNNDDSPVAS-VVAGQLLHFFPNLPRDGVEYVVRLEST 1063 (1165)
T ss_pred             cccccccceEEEEEecCCCCCcceE-EeccceeeeccccCCCCceEEEEEecc
Confidence            3344444434 34444333322222 223333333334467788999988754


No 49 
>KOG1225|consensus
Probab=45.14  E-value=25  Score=34.57  Aligned_cols=110  Identities=10%  Similarity=-0.110  Sum_probs=70.4

Q ss_pred             ceEEEEecCcEEEEEEeCCCCCCCCceeeEEEEEEEEcCCCceEEEEEecCcccEEEEccCCCCCeEEEEEEEEe-CCCC
Q psy15129        106 AMSAGVLNLTSAFVKWSPPPPQHHNGILLGYKIQVKAYNSTKILAQMSLNASTTSVLLNNLTSGAVYTARVVAYT-RAGL  184 (308)
Q Consensus       106 ~l~v~~~~~tsv~VsW~pP~~~~~~g~I~~Y~V~~~~~~~~~~~~~~~~~~~~t~~~l~~L~p~t~Y~v~V~A~n-~~G~  184 (308)
                      .+....-++.++.+.|...      .....|...+.+...+.......+......+.+..|+|+..|.++|.++- ..|.
T Consensus       371 ~~~~~~cs~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~~~~~~~~~v~~~~~~  444 (525)
T KOG1225|consen  371 LLLITECSPPSLCIAGVGR------RRVTHCAGTYCPLGESGGDLQGRVPGDANSVDIQGLEPGDEYNCSVNTVAANIGS  444 (525)
T ss_pred             hhcccccCCCceeeccccc------cccccccccccccccCCCccceeeccceeeeeeeeecCCcceeeehhhhhhhhcc
Confidence            4444455667788888722      22334444443322222222456778888999999999999999999864 3344


Q ss_pred             CCCCccEEEeeCCCCCCCccceeeecCEEEEEecCCCcC
Q psy15129        185 GPYSAPVTLVMDPHAPPHALPSDILITHLVLIHSPIQVP  223 (308)
Q Consensus       185 G~~S~~v~~~T~p~~P~~~~~~~~~~tsv~vsW~pP~~~  223 (308)
                      .+...  ...+....+..+.+.....+++.+.|..|...
T Consensus       445 ~~~~~--~~~~~~~~~g~~~v~~~~~~s~e~~g~~~s~~  481 (525)
T KOG1225|consen  445 LPKDK--SETTVLCWNGGLCVDGETESSLEVGGPCPSSG  481 (525)
T ss_pred             CCccc--ccceEeecCCceeeeeeeeccccccCCCCCcc
Confidence            44332  23333456777888888889999999988654


No 50 
>KOG3515|consensus
Probab=43.86  E-value=2e+02  Score=29.66  Aligned_cols=62  Identities=15%  Similarity=0.101  Sum_probs=52.1

Q ss_pred             EccCCCCCeEEEEEEEEeCCCCCCCCccEEEeeCCCCCCCccceeeecCEEEEEecCCCcCC
Q psy15129        163 LNNLTSGAVYTARVVAYTRAGLGPYSAPVTLVMDPHAPPHALPSDILITHLVLIHSPIQVPG  224 (308)
Q Consensus       163 l~~L~p~t~Y~v~V~A~n~~G~G~~S~~v~~~T~p~~P~~~~~~~~~~tsv~vsW~pP~~~~  224 (308)
                      +-+-.++..|.+.+.+.|..|.+..+..+.--+.+..|.++.+..++...+.|.|.|--..+
T Consensus       658 ~~~~~~~~~y~~~c~t~n~lg~~~v~~~~~~~t~~~~~~n~~~~~~~~~~i~l~~~p~fdgg  719 (741)
T KOG3515|consen  658 ILNHIDGSDYENGCTTQNLLGSDHVSGAIHSGTASVGPINLTYDNLTYSTISLEWMPGFDGG  719 (741)
T ss_pred             ccCCcchhhhcceeeecccCCCccccceecCCcCCCCccceEeeeeeeeeeceeeeeccccc
Confidence            44556778899999999999999888888778888999999999999999999999865443


No 51 
>PF09423 PhoD:  PhoD-like phosphatase;  InterPro: IPR018946 This entry contains a number of putative proteins as well as Alkaline phosphatase D which catalyses the reaction:  A phosphate monoester + H(2)O = an alcohol + phosphate  ; PDB: 2YEQ_B.
Probab=41.39  E-value=38  Score=32.65  Aligned_cols=49  Identities=20%  Similarity=0.102  Sum_probs=22.0

Q ss_pred             cEEEEccCCCCCeEEEEEEEEeCCCCCCCCccEEEeeCCCC-CCCccceeeec
Q psy15129        159 TSVLLNNLTSGAVYTARVVAYTRAGLGPYSAPVTLVMDPHA-PPHALPSDILI  210 (308)
Q Consensus       159 t~~~l~~L~p~t~Y~v~V~A~n~~G~G~~S~~v~~~T~p~~-P~~~~~~~~~~  210 (308)
                      ..+.|.+|+|++.|..+|.+...   +..+..-.+.|.|.. +..+++...+.
T Consensus        64 ~~v~v~gL~p~t~Y~Y~~~~~~~---~~~s~~g~~rT~p~~~~~~~r~a~~SC  113 (453)
T PF09423_consen   64 VKVDVTGLQPGTRYYYRFVVDGG---GQTSPVGRFRTAPDGDPDPFRFAFGSC  113 (453)
T ss_dssp             EEEEE-S--TT-EEEEEEEE--T---TEE---EEEE--TT-----EEEEEE--
T ss_pred             eecccCCCCCCceEEEEEEEecC---CCCCCceEEEcCCCCCCCceEEEEECC
Confidence            35789999999999999988322   334555677777544 33455444443


No 52 
>KOG0613|consensus
Probab=36.47  E-value=86  Score=34.02  Aligned_cols=121  Identities=16%  Similarity=0.065  Sum_probs=72.6

Q ss_pred             CeEEEEEEEEEECcccCCC---CCcEEEeccCCCCCCCCcceEEEEecCcEEEEEEeCCCCCCCCceeeEEEEEEEEcCC
Q psy15129         69 MGEVNTRIIEVVVGVIRQP---SNSMLVQSLEDVPSAAPEAMSAGVLNLTSAFVKWSPPPPQHHNGILLGYKIQVKAYNS  145 (308)
Q Consensus        69 ~T~Y~~~V~a~n~~G~g~~---S~~v~~~T~~~~P~~~P~~l~v~~~~~tsv~VsW~pP~~~~~~g~I~~Y~V~~~~~~~  145 (308)
                      -..|.|.|...-..|.+.+   +....+.....+|...+.++.+.....+.+.+.|.-+-...++ ...+|.+.-.....
T Consensus       301 ~~q~~~~v~~~~~i~~~~~~p~~~~~aaa~~~~~~v~~~~~~~v~a~d~~~v~m~~~~~~~~~p~-~~~~~~~~~~~~~~  379 (1205)
T KOG0613|consen  301 GCQDRFKVTEEAPIGKGKPGPESLQAAAARPPEVPVGLVRNLSVTARDNTLVEMPTALSGTQKPD-EAQGYHGEEVSSES  379 (1205)
T ss_pred             CcccceeeeEEeeccccccCchhhhhhccCCccccccccccceeccccCcceeecccccCCcCCc-hheeeccccccccc
Confidence            4478888888777776533   3233344444556666677777778888999999766222222 23344443221111


Q ss_pred             CceEEEEEecCcccEEEEccCCCCCeEEEEEEEEeCCCCCCCCcc
Q psy15129        146 TKILAQMSLNASTTSVLLNNLTSGAVYTARVVAYTRAGLGPYSAP  190 (308)
Q Consensus       146 ~~~~~~~~~~~~~t~~~l~~L~p~t~Y~v~V~A~n~~G~G~~S~~  190 (308)
                      ........-....+...+.++-++..|...+.|.|..|.-.....
T Consensus       380 ~~~~~~~~~~~ts~~~~~~~~~~~e~~~~~~~a~n~~g~~~~~~~  424 (1205)
T KOG0613|consen  380 LGALPCPVGTVTSHTYTIKDAGPGEGYFTRVPAVNKGGTEQTIAE  424 (1205)
T ss_pred             ccccccccccccCcchhhhhcCcccccccccceeccCCcccccch
Confidence            111111122334456678899999999999999999887655443


No 53 
>PF11344 DUF3146:  Protein of unknown function (DUF3146);  InterPro: IPR021492  This family of proteins with unknown function appear to be restricted to Cyanobacteria. 
Probab=35.73  E-value=28  Score=24.66  Aligned_cols=14  Identities=29%  Similarity=0.465  Sum_probs=12.8

Q ss_pred             cCCCCCeEEEEEEE
Q psy15129        165 NLTSGAVYTARVVA  178 (308)
Q Consensus       165 ~L~p~t~Y~v~V~A  178 (308)
                      .|+||..|.|.|+|
T Consensus        66 ~LEpGgdY~Ftira   79 (80)
T PF11344_consen   66 QLEPGGDYSFTIRA   79 (80)
T ss_pred             eccCCCceEEEEec
Confidence            48999999999997


No 54 
>COG4733 Phage-related protein, tail component [Function unknown]
Probab=33.03  E-value=1e+02  Score=32.05  Aligned_cols=32  Identities=19%  Similarity=0.210  Sum_probs=26.5

Q ss_pred             ecCcccEEEEccCCCCCeEEEEEEEEeCCCCCC
Q psy15129        154 LNASTTSVLLNNLTSGAVYTARVVAYTRAGLGP  186 (308)
Q Consensus       154 ~~~~~t~~~l~~L~p~t~Y~v~V~A~n~~G~G~  186 (308)
                      .....+.+.+.+|.+| +|.++|+|.|..|...
T Consensus       655 ~rt~~~~~~~~gi~~G-qY~i~VrAiN~~g~~~  686 (952)
T COG4733         655 PRTSAAGFDVEGIPAG-QYAIRVRAINVFEPNS  686 (952)
T ss_pred             ccccccceeecCcCcc-ceEEEEEEeeccCCCC
Confidence            3456778999999996 9999999999988643


No 55 
>PF08329 ChitinaseA_N:  Chitinase A, N-terminal domain;  InterPro: IPR013540 This domain is found in a number of bacterial chitinases and similar viral proteins. It is organised into a fibronectin III module domain-like fold, comprising only beta strands. Its function is not known, but it may be involved in interaction with the enzyme substrate, chitin [, ]. It is separated by a hinge region from the catalytic domain (IPR001223 from INTERPRO); this hinge region is probably mobile, allowing the N-terminal domain to have different relative positions in solution []. ; GO: 0004568 chitinase activity; PDB: 2WLY_A 1EDQ_A 2WM0_A 1X6N_A 1NH6_A 2WK2_A 1EHN_A 2WLZ_A 1EIB_A 1FFR_A ....
Probab=30.83  E-value=2.7e+02  Score=22.08  Aligned_cols=72  Identities=21%  Similarity=0.218  Sum_probs=36.1

Q ss_pred             ecCcEEEEEEeCCCCCCCCceeeEEEEEEEEcCCCceEEEEEecCcccEEEEccCCCCCeEEEEEEEEeCCCCCCCCccE
Q psy15129        112 LNLTSAFVKWSPPPPQHHNGILLGYKIQVKAYNSTKILAQMSLNASTTSVLLNNLTSGAVYTARVVAYTRAGLGPYSAPV  191 (308)
Q Consensus       112 ~~~tsv~VsW~pP~~~~~~g~I~~Y~V~~~~~~~~~~~~~~~~~~~~t~~~l~~L~p~t~Y~v~V~A~n~~G~G~~S~~v  191 (308)
                      ...-.|.|+|+.=  ...+  -..|+|.+   ++...+ .-... ......+. ...+..|.++|..+|..|+.. |.++
T Consensus        35 ~~~v~V~VtwN~W--sG~~--Gd~~kly~---dG~~V~-tG~~~-~~~~a~~~-~~~gG~y~~~VeLCN~~GCS~-S~~~  103 (133)
T PF08329_consen   35 NDQVDVSVTWNVW--SGTN--GDTAKLYF---DGVLVW-TGPSP-QQKSATFT-VTKGGRYQMQVELCNADGCST-SAPV  103 (133)
T ss_dssp             -SSEEEEEEEE-S--SS-----SEEEEEE---TTEEEE-EEE---SEEEEEEE-E-S-EEEEEEEEEEETTEEEE----E
T ss_pred             cCceEEEEEEEEe--cCCC--CCEEEEEE---CCEEEE-eCCCc-cCceEEEE-ecCCCEEEEEEEEECCCCccc-CCCE
Confidence            4555789999875  2222  24566665   322222 11112 22333443 356669999999999999765 4455


Q ss_pred             EEe
Q psy15129        192 TLV  194 (308)
Q Consensus       192 ~~~  194 (308)
                      .+.
T Consensus       104 ~V~  106 (133)
T PF08329_consen  104 EVV  106 (133)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            443


No 56 
>PHA02579 7 baseplate wedge subunit; Provisional
Probab=29.66  E-value=1.5e+02  Score=30.66  Aligned_cols=73  Identities=14%  Similarity=0.279  Sum_probs=46.5

Q ss_pred             CcceEEEEecCcEEEEEEeCCCCCCCCceeeEEEEEEEEcCCCc---------eEEEEEecCcccEEEEccCCCCCeEEE
Q psy15129        104 PEAMSAGVLNLTSAFVKWSPPPPQHHNGILLGYKIQVKAYNSTK---------ILAQMSLNASTTSVLLNNLTSGAVYTA  174 (308)
Q Consensus       104 P~~l~v~~~~~tsv~VsW~pP~~~~~~g~I~~Y~V~~~~~~~~~---------~~~~~~~~~~~t~~~l~~L~p~t~Y~v  174 (308)
                      ...|++...+.+.+.|+|+..      |.--.|.|++.......         .|...-.......+. ..|+|.+.|.+
T Consensus         8 vtslrI~kLsaN~v~l~WddV------G~NFyY~Ve~a~t~~~~g~~ip~~~~~w~nlg~T~~~~wFe-d~~~p~t~Yk~   80 (1030)
T PHA02579          8 VTSLRIDKLSANQVYLTWDDV------GANFYYFVELAETRDADGELIPDDELRWINLGYTANNEWFE-DKLQPNTYYKF   80 (1030)
T ss_pred             ccEEEhhhhccceEEEEeecc------CCceEEEEEEEeeccCCCccCCCccccceecCcccchhhhh-hccCCcceEEE
Confidence            357777788999999999876      33347889887532211         122222233333443 34999999999


Q ss_pred             EEEEEeCCCC
Q psy15129        175 RVVAYTRAGL  184 (308)
Q Consensus       175 ~V~A~n~~G~  184 (308)
                      +|+..- .|.
T Consensus        81 Rv~~~~-qGF   89 (1030)
T PHA02579         81 RVAVAA-QGF   89 (1030)
T ss_pred             EEEeec-cCC
Confidence            998654 444


No 57 
>PF07353 Uroplakin_II:  Uroplakin II;  InterPro: IPR009952 This family contains uroplakin II, which is approximately 180 residues long and seems to be restricted to mammals. Uroplakin II is an integral membrane protein, and is one of the components of the apical plaques of mammalian urothelium formed by the asymmetric unit membrane - this is believed to play a role in strengthening the urothelial apical surface to prevent the cells from rupturing during bladder distension [].; GO: 0016044 cellular membrane organization, 0030176 integral to endoplasmic reticulum membrane
Probab=29.04  E-value=99  Score=25.36  Aligned_cols=25  Identities=16%  Similarity=0.232  Sum_probs=20.4

Q ss_pred             cccEEEEccCCCCCeEEEEEEEEeC
Q psy15129        157 STTSVLLNNLTSGAVYTARVVAYTR  181 (308)
Q Consensus       157 ~~t~~~l~~L~p~t~Y~v~V~A~n~  181 (308)
                      ....+.+.+|.||+.|.|+-...++
T Consensus       100 rlsaYqVtNL~pGTkY~isY~Vtkg  124 (184)
T PF07353_consen  100 RLSAYQVTNLQPGTKYYISYLVTKG  124 (184)
T ss_pred             cceeEEeeccCCCcEEEEEEEEecC
Confidence            3456889999999999999877664


No 58 
>KOG1378|consensus
Probab=27.16  E-value=5.9e+02  Score=24.73  Aligned_cols=36  Identities=17%  Similarity=0.194  Sum_probs=26.7

Q ss_pred             cccEEEEccCCCCCeEEEEEEEEeCCCCCCCCccEEEeeCC
Q psy15129        157 STTSVLLNNLTSGAVYTARVVAYTRAGLGPYSAPVTLVMDP  197 (308)
Q Consensus       157 ~~t~~~l~~L~p~t~Y~v~V~A~n~~G~G~~S~~v~~~T~p  197 (308)
                      -...+++.+|+|++.|..+|-.-     ..+|....+.|+|
T Consensus       107 ~ih~~~~~~L~~~t~YyY~~Gs~-----~~wS~~f~F~t~p  142 (452)
T KOG1378|consen  107 YIHDAVMKNLEPNTRYYYQVGSD-----LKWSEIFSFKTPP  142 (452)
T ss_pred             eEeeeeecCCCCCceEEEEeCCC-----CCcccceEeECCC
Confidence            34567889999999999988322     2267878888877


No 59 
>KOG3834|consensus
Probab=26.62  E-value=1.3e+02  Score=28.82  Aligned_cols=69  Identities=13%  Similarity=0.225  Sum_probs=45.1

Q ss_pred             ceEEEEecCcEEEEEEeCCCCCCCCceeeEEEEEEEEcCCC--ceEEEEEecCcccEEEEccCCCCCeEEEEE
Q psy15129        106 AMSAGVLNLTSAFVKWSPPPPQHHNGILLGYKIQVKAYNST--KILAQMSLNASTTSVLLNNLTSGAVYTARV  176 (308)
Q Consensus       106 ~l~v~~~~~tsv~VsW~pP~~~~~~g~I~~Y~V~~~~~~~~--~~~~~~~~~~~~t~~~l~~L~p~t~Y~v~V  176 (308)
                      .+.+.+.....+++.|-.|. +...|.+.+|.|+|......  ..|....+..+. -..+-+|.|++.|.+-+
T Consensus        67 kltv~n~kt~~~R~v~I~ps-~~wggqllGvsvrFcsf~~A~~~vwHvl~V~p~S-PaalAgl~~~~DYivG~  137 (462)
T KOG3834|consen   67 KLTVYNSKTQEVRIVEIVPS-NNWGGQLLGVSVRFCSFDGAVESVWHVLSVEPNS-PAALAGLRPYTDYIVGI  137 (462)
T ss_pred             EEEEEecccceeEEEEeccc-ccccccccceEEEeccCccchhheeeeeecCCCC-HHHhcccccccceEecc
Confidence            44444555567888898884 44556689999999765322  223333444333 56678999999998855


No 60 
>PF11811 DUF3331:  Domain of unknown function (DUF3331);  InterPro: IPR021769  This family of proteins are functionally uncharacterised. This family is only found in bacteria. Proteins in this family vary in length from 96 to 160 amino acids. 
Probab=24.88  E-value=1.5e+02  Score=22.07  Aligned_cols=21  Identities=29%  Similarity=0.362  Sum_probs=16.4

Q ss_pred             CcceEEEEe-cCcEEEEEEeCC
Q psy15129        104 PEAMSAGVL-NLTSAFVKWSPP  124 (308)
Q Consensus       104 P~~l~v~~~-~~tsv~VsW~pP  124 (308)
                      +..+.+... +++++.|+|..|
T Consensus        15 ~~~I~vlEr~S~~t~~V~W~D~   36 (96)
T PF11811_consen   15 PVRIRVLERPSDTTLSVSWSDP   36 (96)
T ss_pred             CCEEEEEEecCCCEEEEEEECC
Confidence            346666555 899999999988


No 61 
>cd05762 Ig8_MLCK Eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK). Ig8_MLCK: the eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK). MLCK is a key regulator of different forms of cell motility involving actin and myosin II.  Agonist stimulation of smooth muscle cells increases cytosolic Ca2+, which binds calmodulin.  This Ca2+-calmodulin complex in turn binds to and activates MLCK. Activated MLCK leads to the phosphorylation of the 20 kDa myosin regulatory light chain (RLC) of myosin II and the stimulation of actin-activated myosin MgATPase activity. MLCK is widely present in vertebrate tissues; it phosphorylates the 20 kDa RLC of both smooth and nonmuscle myosin II. Phosphorylation leads to the activation of the myosin motor domain and altered structural properties of myosin II. In smooth muscle MLCK it is involved in initiating contraction. In nonmuscle cells, MLCK may participate in cell division and cell motility; it has
Probab=21.44  E-value=2.8e+02  Score=20.13  Aligned_cols=43  Identities=12%  Similarity=0.140  Sum_probs=29.1

Q ss_pred             ccEEEEccCCCCCeEEEEEEEEeCCCCCCCCccEEEeeCCCCC
Q psy15129        158 TTSVLLNNLTSGAVYTARVVAYTRAGLGPYSAPVTLVMDPHAP  200 (308)
Q Consensus       158 ~t~~~l~~L~p~t~Y~v~V~A~n~~G~G~~S~~v~~~T~p~~P  200 (308)
                      ...+.|.+....-.=...+.|.|..|.-..+..+.+.-.|++|
T Consensus        55 ~s~L~I~~~~~~D~G~Ytc~a~N~~G~~~~~~~l~V~~~P~pP   97 (98)
T cd05762          55 SSKLTITEGQQEHCGCYTLEVENKLGSRQAQVNLTVVDKPDPP   97 (98)
T ss_pred             eeEEEECCCChhhCEEEEEEEEcCCCceeEEEEEEEecCCCCC
Confidence            3456777776665556667789998886666666666666655


No 62 
>KOG0613|consensus
Probab=21.13  E-value=3.9e+02  Score=29.29  Aligned_cols=81  Identities=20%  Similarity=0.284  Sum_probs=46.2

Q ss_pred             CCCCCcceEEEEecCcEEEEEEeCCCCCCCCceeeEEEEEEEEcCCCceEEEEEecCcccEEEEccCCCCCeEEEEEEEE
Q psy15129        100 PSAAPEAMSAGVLNLTSAFVKWSPPPPQHHNGILLGYKIQVKAYNSTKILAQMSLNASTTSVLLNNLTSGAVYTARVVAY  179 (308)
Q Consensus       100 P~~~P~~l~v~~~~~tsv~VsW~pP~~~~~~g~I~~Y~V~~~~~~~~~~~~~~~~~~~~t~~~l~~L~p~t~Y~v~V~A~  179 (308)
                      |..+|.+-........-+...|.+|.. .....+..|.|..+..+.......  +........+..+.    |.++|++.
T Consensus       139 pd~~~~~~~sv~~~~~~v~~~~~~~~~-d~~~k~~~~iie~~~~g~s~~~~~--l~~~~~~s~~~~a~----~e~~v~~v  211 (1205)
T KOG0613|consen  139 PDPPPSNRESVLVHRARVLPAWRPPRE-DGGRKREEYIIERRQAGRSPWLKR--LTQPTDDSTDTDAH----YESRVRAV  211 (1205)
T ss_pred             CCCCCCCccceeecCceecccccCCcc-CccceeecceEEEEeccCCCcccc--cccccCCcceeccc----cceeEEEE
Confidence            444455555556667788999999843 334467888888876554432211  11112222222232    67777777


Q ss_pred             eCCCCCCC
Q psy15129        180 TRAGLGPY  187 (308)
Q Consensus       180 n~~G~G~~  187 (308)
                      ...|....
T Consensus       212 ~s~gqp~~  219 (1205)
T KOG0613|consen  212 VSAGQPEP  219 (1205)
T ss_pred             EecCCCcc
Confidence            77776554


No 63 
>KOG3515|consensus
Probab=20.30  E-value=1.5e+02  Score=30.55  Aligned_cols=71  Identities=8%  Similarity=0.141  Sum_probs=51.9

Q ss_pred             CCeEEEEEEEEEECcccCCCCCcEEEeccCCCCCCCCcceEEEEecCcEEEEEEeCCCCCCCCceeeEEEEEEEEcCC
Q psy15129         68 KMGEVNTRIIEVVVGVIRQPSNSMLVQSLEDVPSAAPEAMSAGVLNLTSAFVKWSPPPPQHHNGILLGYKIQVKAYNS  145 (308)
Q Consensus        68 p~T~Y~~~V~a~n~~G~g~~S~~v~~~T~~~~P~~~P~~l~v~~~~~tsv~VsW~pP~~~~~~g~I~~Y~V~~~~~~~  145 (308)
                      +...|.+.+.+.|..|.++.+-.+.--|.   | ..|.||.+.......+.|.|.|-   ...|..+.+.+.|...+.
T Consensus       663 ~~~~y~~~c~t~n~lg~~~v~~~~~~~t~---~-~~~~n~~~~~~~~~~i~l~~~p~---fdgg~~q~f~~~~~~~~~  733 (741)
T KOG3515|consen  663 DGSDYENGCTTQNLLGSDHVSGAIHSGTA---S-VGPINLTYDNLTYSTISLEWMPG---FDGGLQQRFFLKYYDLGT  733 (741)
T ss_pred             chhhhcceeeecccCCCccccceecCCcC---C-CCccceEeeeeeeeeeceeeeec---cccccccceeeehhhcCC
Confidence            45688888999998888776654433222   2 34789999889999999999985   446677788888876443


Done!