RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy15129
(308 letters)
>1x5h_A Neogenin; RGM binding, fibronectin type III domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
b.1.2.1
Length = 132
Score = 129 bits (326), Expect = 1e-37
Identities = 38/119 (31%), Positives = 56/119 (47%), Gaps = 3/119 (2%)
Query: 86 QPSNSMLVQSLEDVPSAAPEAMSAGVLNLTSAFVKWSPPPPQHHNGILLGYKIQVKAYNS 145
S + V++L DVPSAAP+ +S V N S + W PP P NG + GYKI+ + +
Sbjct: 4 GSSGDVAVRTLSDVPSAAPQNLSLEVRNSKSIMIHWQPPAPATQNGQITGYKIRYRKASR 63
Query: 146 TKILAQMSLNASTTSVLLNNLTSGAVYTARVVAYTRAGLGPYSAPV---TLVMDPHAPP 201
+ + ++ + S L+ L G Y RV A T G GP + + T D
Sbjct: 64 KSDVTETLVSGTQLSQLIEGLDRGTEYNFRVAALTINGTGPATDWLSAETFESDLDETR 122
>2edx_A Protein tyrosine phosphatase, receptor type, F; LAR protein,
leukocyte antigen related, structural genomics, NPPSFA;
NMR {Homo sapiens}
Length = 134
Score = 124 bits (314), Expect = 1e-35
Identities = 31/125 (24%), Positives = 53/125 (42%), Gaps = 3/125 (2%)
Query: 86 QPSNSMLVQSLEDVPSAAPEAMSAGVLNLTSAFVKWSPPPPQHHNGILLGYKIQVKAYNS 145
S ++ ++ + PSA P+ + + T+ V W PPP NG++ Y + +A +
Sbjct: 4 GSSGTIEARTAQSTPSAPPQKVMCVSMGSTTVRVSWVPPPADSRNGVITQYSVAYEAVDG 63
Query: 146 TKILAQM--SLNASTTSVLLNNLTSGAVYTARVVAYTRAGLGPYSAPVTLVMDPHAPPHA 203
+ ++ +S L L Y V A+T G GP S+PV + D P
Sbjct: 64 EDRGRHVVDGISREHSSWDLVGLEKWTEYRVWVRAHTDVGPGPESSPVLVRTDEDVPSGP 123
Query: 204 LPSDI 208
P +
Sbjct: 124 -PRKV 127
Score = 29.3 bits (66), Expect = 0.67
Identities = 10/27 (37%), Positives = 17/27 (62%)
Query: 87 PSNSMLVQSLEDVPSAAPEAMSAGVLN 113
S+ +LV++ EDVPS P + +G +
Sbjct: 107 ESSPVLVRTDEDVPSGPPRKVESGPSS 133
>2ed9_A Netrin receptor DCC; tumor suppressor protein DCC, colorectal
cancer suppressor, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 124
Score = 123 bits (310), Expect = 2e-35
Identities = 36/107 (33%), Positives = 51/107 (47%), Gaps = 2/107 (1%)
Query: 86 QPSNSMLVQSLEDVPSAAPEAMSAGVLNLTSAFVKWSPPPPQHHNGILLGYKIQVKAYNS 145
++ + V +L DVPSA P+ +S V+N S V W PPP NG + GYKI+ +
Sbjct: 14 VSTDDITVVTLSDVPSAPPQNVSLEVVNSRSIKVSWLPPPSGTQNGFITGYKIRHRKTTR 73
Query: 146 TKILAQMSLNASTTSVLLNNLTSGAVYTARVVAYTRAGLGPYSAPVT 192
+L + L L G+ Y+ +V A T G GP S T
Sbjct: 74 RGE--METLEPNNLWYLFTGLEKGSQYSFQVSAMTVNGTGPPSNWYT 118
Score = 29.6 bits (67), Expect = 0.47
Identities = 9/29 (31%), Positives = 13/29 (44%), Gaps = 3/29 (10%)
Query: 176 VVAYTRAGLGPYSAPVTLVMD---PHAPP 201
+ R G G + +T+V P APP
Sbjct: 4 GSSGNRYGPGVSTDDITVVTLSDVPSAPP 32
>1uen_A KIAA0343 protein; immunoglobulin-like beta-sandwich fold,
fibronectin type III, NG-CAM related cell adhesion
molecule, structural genomics; NMR {Homo sapiens} SCOP:
b.1.2.1
Length = 125
Score = 119 bits (300), Expect = 6e-34
Identities = 33/121 (27%), Positives = 44/121 (36%), Gaps = 7/121 (5%)
Query: 88 SNSMLVQSLEDVPSAAPEAMSAGVLNLTSAFVKWSPPPPQHHNGILLGYKIQVKAYNS-- 145
S+ S ED+P AP + V+N T A V W P P + G L GY+I S
Sbjct: 2 SSGSSGHSGEDLPMVAPGNVRVNVVNSTLAEVHWDPVPLKSIRGHLQGYRIYYWKTQSSS 61
Query: 146 -----TKILAQMSLNASTTSVLLNNLTSGAVYTARVVAYTRAGLGPYSAPVTLVMDPHAP 200
++ S T +L L + YT V G GP S +
Sbjct: 62 KRNRRHIEKKILTFQGSKTHGMLPGLEPFSHYTLNVRVVNGKGEGPASPDRVFNTPEGSG 121
Query: 201 P 201
P
Sbjct: 122 P 122
>1va9_A DOWN syndrome cell adhesion molecule like- protein 1B; FNIII
domain, dscaml1 protein, structural genomics; NMR {Homo
sapiens} SCOP: b.1.2.1
Length = 122
Score = 119 bits (299), Expect = 9e-34
Identities = 29/118 (24%), Positives = 47/118 (39%), Gaps = 4/118 (3%)
Query: 87 PSNSMLVQSLEDVPSAAPEAMSAGVLNLTSAFVKWSPPPPQHHNGILLGYKIQVKAYNS- 145
S S + + E P P ++ + S V W P + NG++ GY+I + +
Sbjct: 2 SSGSSGISTEEAAPDGPPMDVTLQPVTSQSIQVTWKAPKKELQNGVIRGYQIGYRENSPG 61
Query: 146 ---TKILAQMSLNASTTSVLLNNLTSGAVYTARVVAYTRAGLGPYSAPVTLVMDPHAP 200
+ +M + L+NL A Y V A+ RAG GP S+ + P
Sbjct: 62 SNGQYSIVEMKATGDSEVYTLDNLKKFAQYGVVVQAFNRAGTGPSSSEINATTLESGP 119
>2dlh_A Receptor-type tyrosine-protein phosphatase delta; protein-tyrosine
phosphatase delta, R-PTP-delta, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 121
Score = 115 bits (289), Expect = 3e-32
Identities = 31/117 (26%), Positives = 55/117 (47%), Gaps = 3/117 (2%)
Query: 86 QPSNSMLVQSLEDVPSAAPEAMSAGVLNLTSAFVKWSPPPPQHHNGILLGYKIQVKAYNS 145
S +L Q+ E PS+AP + A +L+ T+ V+W P NG + GY++ +
Sbjct: 4 GSSGPVLTQTSEQAPSSAPRDVQARMLSSTTILVQWKEPE--EPNGQIQGYRVYYTMDPT 61
Query: 146 TKILAQMSLNA-STTSVLLNNLTSGAVYTARVVAYTRAGLGPYSAPVTLVMDPHAPP 201
+ M N + + NL Y+ +V+A+T G GP S+ + ++ + P
Sbjct: 62 QHVNNWMKHNVADSQITTIGNLVPQKTYSVKVLAFTSIGDGPLSSDIQVITQTGSGP 118
>2dbj_A Proto-oncogene tyrosine-protein kinase MER precursor; C-MER,
receptor tyrosine kinase mertk, FN3 domain, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 124
Score = 114 bits (286), Expect = 8e-32
Identities = 31/120 (25%), Positives = 59/120 (49%), Gaps = 6/120 (5%)
Query: 86 QPSNSMLVQSLEDVPSAAPEAMSAGV-LNLTSAFVKWSPPPPQHHNGILLGYKIQVKAYN 144
S +L + E PS AP ++ + + + ++W PP + +G L+GY+I +
Sbjct: 4 GSSGWILASTTEGAPSVAPLNVTVFLNESSDNVDIRWMKPPTKQQDGELVGYRISHVWQS 63
Query: 145 S---TKILAQMSLNASTTSVLLNNLTSGAVYTARVVAYTRAGLGPYSAPVTLVMDPHAPP 201
+ ++L ++ N + ++ A T R+ A TR G+GP+S PV + + H+ P
Sbjct: 64 AGISKELLEEVGQN--GSRARISVQVHNATCTVRIAAVTRGGVGPFSDPVKIFIPAHSGP 121
>2edy_A Receptor-type tyrosine-protein phosphatase F; LAR protein,
leukocyte antigen related, structural genomics, NPPSFA;
NMR {Homo sapiens}
Length = 103
Score = 111 bits (280), Expect = 4e-31
Identities = 25/103 (24%), Positives = 41/103 (39%), Gaps = 3/103 (2%)
Query: 95 SLEDVPSAAPEAMSAGVLNLTSAFVKWSPPPPQHHNGILLGYKIQVKAYNSTKILAQMSL 154
S PS P+ + L ++ + W PP NG ++ Y + + NS + ++
Sbjct: 3 SGSSGPSGFPQNLHVTGLTTSTTELAWDPPVLAERNGRIISYTVVFRDINSQQ---ELQN 59
Query: 155 NASTTSVLLNNLTSGAVYTARVVAYTRAGLGPYSAPVTLVMDP 197
+ T L L Y +V A+T G GP S + P
Sbjct: 60 ITTDTRFTLTGLKPDTTYDIKVRAWTSKGSGPLSPSIQSRTMP 102
>2ee2_A Contactin-1; neural cell surface protein F3, glycoprotein GP135,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 119
Score = 110 bits (276), Expect = 2e-30
Identities = 28/116 (24%), Positives = 46/116 (39%), Gaps = 5/116 (4%)
Query: 87 PSNSMLVQSLEDVPSAAPEAMSAGVLNLTSAFVKWSPPPPQHHNGILLGYKIQV-KAYNS 145
S ++ S +D PS AP + VL+ + V W I+ Y+I+ A++
Sbjct: 5 SSGVAVINSAQDAPSEAPTEVGVKVLSSSEISVHWEHVL----EKIVESYQIRYWAAHDK 60
Query: 146 TKILAQMSLNASTTSVLLNNLTSGAVYTARVVAYTRAGLGPYSAPVTLVMDPHAPP 201
+ ++ + + S L NL Y V A AG GP S + + P
Sbjct: 61 EEAANRVQVTSQEYSARLENLLPDTQYFIEVGACNSAGCGPPSDMIEAFTKKASGP 116
>1wfn_A Sidekick 2; FN3, cell adhesion, structural genomics, riken
structural genomics/proteomics initiative, RSGI; NMR
{Homo sapiens} SCOP: b.1.2.1
Length = 119
Score = 106 bits (267), Expect = 5e-29
Identities = 38/118 (32%), Positives = 48/118 (40%), Gaps = 3/118 (2%)
Query: 86 QPSNSMLVQSLEDVPSAAPEAMSAGVLNLTSAFVKWSPPPPQHHNGILLGYKIQVKAYNS 145
S LV++ EDVP +S + TS V W P NGIL GY+I + YN
Sbjct: 4 GSSGPQLVRTHEDVPGP-VGHLSFSEILDTSLKVSWQEPG--EKNGILTGYRISWEEYNR 60
Query: 146 TKILAQMSLNASTTSVLLNNLTSGAVYTARVVAYTRAGLGPYSAPVTLVMDPHAPPHA 203
T L T + LT+ YT V A T G G SA P + P +
Sbjct: 61 TNTRVTHYLPNVTLEYRVTGLTALTTYTIEVAAMTSKGQGQVSASTISSGVPPSGPSS 118
>3n1f_C Cell adhesion molecule-related/DOWN-regulated BY; binding sites,
calcium, cell adhesion molecules, cell cycle cell LINE,
conserved sequence; 1.60A {Homo sapiens} PDB: 3d1m_C
3n1q_C 3n1m_C 3n1g_C 3n1p_C
Length = 102
Score = 100 bits (252), Expect = 4e-27
Identities = 15/96 (15%), Positives = 35/96 (36%), Gaps = 2/96 (2%)
Query: 99 VPSAAPEAMSAGVLNLTSAFVKWSPPPPQHHNGILLGYKIQVKAYNSTKILA--QMSLNA 156
P P ++ T +KW+ P ++N + G+ I + +S + +
Sbjct: 3 TPITGPHIAYTEAVSDTQIMLKWTYIPSSNNNTPIQGFYIYYRPTDSDNDSDYKRDVVEG 62
Query: 157 STTSVLLNNLTSGAVYTARVVAYTRAGLGPYSAPVT 192
S ++ +L Y ++ + G +S +
Sbjct: 63 SKQWHMIGHLQPETSYDIKMQCFNEGGESEFSNVMI 98
>2ede_A Netrin receptor DCC; tumor suppressor protein DCC, colorectal
cancer suppressor, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 114
Score = 96.7 bits (241), Expect = 3e-25
Identities = 22/109 (20%), Positives = 41/109 (37%), Gaps = 2/109 (1%)
Query: 95 SLEDVPSAAPEAMSAGVLNLTSAFVKWSPPPPQHHNGILLGYKIQVKAYNSTKI--LAQM 152
S P++AP+ ++ V S PP NG + Y + + I
Sbjct: 3 SGSSGPTSAPKDLTVITREGKPRAVIVSWQPPLEANGKITAYILFYTLDKNIPIDDWIME 62
Query: 153 SLNASTTSVLLNNLTSGAVYTARVVAYTRAGLGPYSAPVTLVMDPHAPP 201
+++ + + +L +Y R+ A G+GP S P+ + P
Sbjct: 63 TISGDRLTHQIMDLNLDTMYYFRIQARNSKGVGPLSDPILFRTLKVSGP 111
>1wj3_A KIAA1496 protein; beta sandwich, PANG, structural genomics, riken
structural genomics/proteomics initiative, RSGI,
neuropeptide; NMR {Homo sapiens} SCOP: b.1.2.1
Length = 117
Score = 96.1 bits (239), Expect = 4e-25
Identities = 25/118 (21%), Positives = 42/118 (35%), Gaps = 5/118 (4%)
Query: 86 QPSNSMLVQSLEDVPSAAPEAMSAGVLNLTSAFVKWSPPPPQHHNGILLGYKIQVKAYNS 145
S ++ V + + PS P + + T + W + + GYK+ Y +
Sbjct: 4 GSSGTVNVTTKKTPPSQPPGNVVWNATD-TKVLLNWEQVKAMENESEVTGYKVF---YRT 59
Query: 146 TKILAQMSLNASTTSVLLNNLTSGAVYTARVVAYTRAGLGPYSAPVTLVMDPHAPPHA 203
+ LN + TS L L Y V A T G G S + + + P +
Sbjct: 60 SSQNNVQVLNTNKTSAELV-LPIKEDYIIEVKATTDGGDGTSSEQIRIPRITSSGPSS 116
>3p4l_A Neogenin; iron homeostasis, hemojuvelin receptor, FNIII domain,
fibron type III, cell adhesion; 1.80A {Homo sapiens}
PDB: 1x5k_A
Length = 211
Score = 98.3 bits (245), Expect = 8e-25
Identities = 24/120 (20%), Positives = 43/120 (35%), Gaps = 4/120 (3%)
Query: 87 PSNSMLVQSLEDVPSAAPEAMSAGVLNLTSAFVKWSPPPPQHHNGILLGYKIQVKAYNST 146
S + + E VP++ P+ ++ + + PP NG + GY I +
Sbjct: 92 WSMTAHGTTFELVPTSPPKDVTVVSKEGKPKTIIVNWQPPSEANGKITGYIIYYSTDVNA 151
Query: 147 KILAQMSLN--ASTTSVLLNNLTSGAVYTARVVAYTRAGLGPYSAPVTLVMD--PHAPPH 202
+I + + + + LT Y ++ A G+GP S V H H
Sbjct: 152 EIHDWVIEPVVGNRLTHQIQELTLDTPYYFKIQARNSKGMGPMSEAVQFRTPKAHHHHHH 211
Score = 84.5 bits (209), Expect = 1e-19
Identities = 23/127 (18%), Positives = 41/127 (32%), Gaps = 4/127 (3%)
Query: 98 DVPSAAPEAMSAGVLNLTSAFVKWSPP--PPQHHNGILLGYKIQVKAYNSTKILAQMSLN 155
D+P P + A +L+ + + W+ P Y ++ K + N
Sbjct: 2 DLPMMPPVGVQASILSHDTIRITWADNSLPKHQKITDSRYYTVRWKTNIPANT-KYKNAN 60
Query: 156 ASTTSVLLNNLTSGAVYTARVVAYTRAGLGPYSAPVTLVMDPHAPPHALPSDILITHLVL 215
A+T S L+ L +Y V+ +S P + P D+ +
Sbjct: 61 ATTLSYLVTGLKPNTLYEFSVMVTKGRRSSTWSMTAH-GTTFELVPTSPPKDVTVVSKEG 119
Query: 216 IHSPIQV 222
I V
Sbjct: 120 KPKTIIV 126
>1x4y_A Biregional cell adhesion molecule-related/DOWN- regulated oncogenes
(CDON)binding...; fibronectin type III, FN3; NMR {Mus
musculus} SCOP: b.1.2.1
Length = 114
Score = 95.2 bits (237), Expect = 9e-25
Identities = 18/109 (16%), Positives = 38/109 (34%), Gaps = 2/109 (1%)
Query: 95 SLEDVPSAAPEAMSAGVLNLTSAFVKWSPPPPQHHNGILLGYKIQVKAYNSTKILA--QM 152
S P A P +N T+ +KW P ++N + G+ I + +S +
Sbjct: 3 SGSSGPVAGPYITFTDAVNETTIMLKWMYIPASNNNTPIHGFYIYYRPTDSDNDSDYKKD 62
Query: 153 SLNASTTSVLLNNLTSGAVYTARVVAYTRAGLGPYSAPVTLVMDPHAPP 201
+ +++L Y ++ + G +S + + P
Sbjct: 63 MVEGDRYWHSISHLQPETSYDIKMQCFNEGGESEFSNVMICETKARSGP 111
>3l5i_A Interleukin-6 receptor subunit beta; cytokine receptor, fibronectin
type III domain, alternative cell membrane, disulfide
bond; 1.90A {Homo sapiens} PDB: 3l5j_A
Length = 290
Score = 98.0 bits (244), Expect = 5e-24
Identities = 23/102 (22%), Positives = 41/102 (40%), Gaps = 3/102 (2%)
Query: 87 PSNSMLVQSLEDVPSAAPEAMSAGVLNLTSAFVKWSPPPPQHHNGILLGYKIQVKAYNST 146
S+ + PS P + + A ++W P NG + Y I +
Sbjct: 184 SPESIKAYLKQAPPSKGPT-VRTKKVGKNEAVLEWDQLPVDVQNGFIRNYTIFYRTIIGN 242
Query: 147 KILAQMSLNASTTSVLLNNLTSGAVYTARVVAYTRAGLGPYS 188
+ +++++S T L++LTS +Y R+ AYT G
Sbjct: 243 ET--AVNVDSSHTEYTLSSLTSDTLYMVRMAAYTDEGGKDGP 282
Score = 72.9 bits (179), Expect = 5e-15
Identities = 25/111 (22%), Positives = 41/111 (36%), Gaps = 11/111 (9%)
Query: 97 EDVPSAAPEAM----SAGVLNLTSAFVKWSPPPPQHHNGILLGYKIQVKAYNSTKILAQM 152
ED PS AP + + + W PP NG +L Y++ + + S L
Sbjct: 1 EDRPSKAPSFWYKIDPSHTQGYRTVQLVWKTLPPFEANGKILDYEVTLTRWKSH--LQNY 58
Query: 153 SLNASTTSVLLNNLTSGAVYTARVVAYTRAGLGPYSAPVTLVMDPHAPPHA 203
++NA+ +V L N Y A + G + +T+ H
Sbjct: 59 TVNATKLTVNLTNDR----YLATLTVRNLVGKSDAA-VLTIPACDFQATHP 104
Score = 61.7 bits (150), Expect = 4e-11
Identities = 15/118 (12%), Positives = 31/118 (26%), Gaps = 5/118 (4%)
Query: 87 PSNSMLVQSLEDVPSAAPEAMSAGVLNLTSAFVKWSPPPPQHHNGILLGYKIQVKAYNST 146
+ + + + + + + A + +V+W+ P +L + +
Sbjct: 88 DAAVLTIPACDFQATHPVMDLKAFPKD-NMLWVEWTTPRESV-KKYILEWCVLSDKAPCI 145
Query: 147 KILAQMSLNASTTSVLLNNLTSGAVYTARVVAYTRAGLGPYSAPV--TLVMDPHAPPH 202
Q + L NL Y V G G + P P
Sbjct: 146 -TDWQQEDGTVHRTYLRGNLAESKCYLITVTPVYADGPGSPESIKAYLKQAPPSKGPT 202
>1wfo_A Sidekick 2; FN3, cell adhesion, structural genomics, riken
structural genomics/proteomics initiative, RSGI; NMR
{Homo sapiens} SCOP: b.1.2.1
Length = 130
Score = 93.6 bits (233), Expect = 6e-24
Identities = 32/122 (26%), Positives = 52/122 (42%), Gaps = 4/122 (3%)
Query: 81 VGVIRQPSNSMLVQSLEDVPSAAPEAMSAGVLNLTSAFVKWSPPPPQHHNGILLGYKIQV 140
+G +L ++L+DVP P + + TS + W PP NGI+L Y+I
Sbjct: 9 IGDGSPSHPPILERTLDDVPGP-PMGILFPEVRTTSVRLIWQPPA--APNGIILAYQITH 65
Query: 141 KAYNSTKILAQM-SLNASTTSVLLNNLTSGAVYTARVVAYTRAGLGPYSAPVTLVMDPHA 199
+ +T A + L S L +VY R+ A TR G G + + + + +
Sbjct: 66 RLNTTTANTATVEVLAPSARQYTATGLKPESVYLFRITAQTRKGWGEAAEALVVTTEKRS 125
Query: 200 PP 201
P
Sbjct: 126 GP 127
Score = 27.0 bits (60), Expect = 4.1
Identities = 10/36 (27%), Positives = 11/36 (30%), Gaps = 1/36 (2%)
Query: 176 VVAYTRAGLGPYSAPVTLVMDPHAPPHALPSDILIT 211
+ R G G S P L P P IL
Sbjct: 3 SGSSGRIGDGSPSHPPILERTLDDVPGP-PMGILFP 37
>3f7q_A Integrin beta-4, GP150; hemidesmosome, cell adhesion, carcinoma,
epidermolysis bullosa, alternative splicing, disease
mutation, glycoprotein; HET: 1PE PG4; 1.75A {Homo
sapiens} PDB: 3f7r_A 3f7p_C 1qg3_A
Length = 234
Score = 96.8 bits (241), Expect = 6e-24
Identities = 26/125 (20%), Positives = 48/125 (38%), Gaps = 8/125 (6%)
Query: 87 PSNSMLVQSLEDVPSAAPEAMSAGVLNLTSAFVKWSPPPPQHHNGILLGYKIQVKAYNST 146
S+ + ++ ++VPS P ++ V++ T + W+ P NG + Y++ N
Sbjct: 86 YSSLVSCRTHQEVPSE-PGRLAFNVVSSTVTQLSWAEPA--ETNGEITAYEVCYGLVNDD 142
Query: 147 KILA-----QMSLNASTTSVLLNNLTSGAVYTARVVAYTRAGLGPYSAPVTLVMDPHAPP 201
+ N +L+ NL Y V A AG GP + + P
Sbjct: 143 NRPIGPMKKVLVDNPKNRMLLIENLRESQPYRYTVKARNGAGWGPEREAIINLATQPKRP 202
Query: 202 HALPS 206
++P
Sbjct: 203 MSIPI 207
Score = 84.8 bits (210), Expect = 1e-19
Identities = 28/112 (25%), Positives = 45/112 (40%), Gaps = 8/112 (7%)
Query: 97 EDVPSAAPEAMSAGVLNLTSAFVKWSPPPPQHHNGILLGYKIQVKAYNSTKILAQMSLNA 156
+ AP+ +A W PP +G +GY+++ ++ A + L++
Sbjct: 2 SHMDLGAPQNPNAKAAGSRKIHFNWLPP-----SGKPMGYRVKYWIQGDSESEAHL-LDS 55
Query: 157 STTSVLLNNLTSGAVYTARVVAYTRAGLGPYSAPVTLVMDPHAPPHALPSDI 208
SV L NL Y +V AY G GPYS+ V+ P P +
Sbjct: 56 KVPSVELTNLYPYCDYEMKVCAYGAQGEGPYSSLVS-CRTHQEVPSE-PGRL 105
>1x5g_A Neogenin; RGM binding, fibronectin type III domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
b.1.2.1
Length = 116
Score = 92.4 bits (230), Expect = 1e-23
Identities = 28/116 (24%), Positives = 45/116 (38%), Gaps = 6/116 (5%)
Query: 86 QPSNSMLVQSLEDVPSAAPEAMSAGVLNLTSAFVKWSPPPPQHHNGILLGYKIQVKAYNS 145
S + Q +P + A + TS V W P NG + YK+ +
Sbjct: 4 GSSGRVETQPEVQLPGP-APNLRAYAASPTSITVTWETPV--SGNGEIQNYKLYYMEKGT 60
Query: 146 TKILAQMSLNASTTSVLLNNLTSGAVYTARVVAYTRAGLGPYSAPVTLVMDPHAPP 201
K + ++ S+ S +N L Y+ RVVAY + G G + V + + P
Sbjct: 61 DK---EQDVDVSSHSYTINGLKKYTEYSFRVVAYNKHGPGVSTPDVAVRTLSDSGP 113
>2ed7_A Netrin receptor DCC; tumor suppressor protein DCC, colorectal
cancer suppressor, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 119
Score = 90.9 bits (226), Expect = 5e-23
Identities = 27/116 (23%), Positives = 46/116 (39%), Gaps = 3/116 (2%)
Query: 86 QPSNSMLVQSLEDVPSAAPEAMSAGVLNLTSAFVKWSPPPPQHHNGILLGYKIQVKAYNS 145
S + S +PSA P + +++ + W PP G + + +
Sbjct: 4 GSSGKPAIPSSSVLPSA-PRDVVPVLVSSRFVRLSWRPP--AEAKGNIQTFTVFFSREGD 60
Query: 146 TKILAQMSLNASTTSVLLNNLTSGAVYTARVVAYTRAGLGPYSAPVTLVMDPHAPP 201
+ A + + + + NL A+YT RVVAY G G S P+ + P + P
Sbjct: 61 NRERALNTTQPGSLQLTVGNLKPEAMYTFRVVAYNEWGPGESSQPIKVATQPESGP 116
>1x5f_A Neogenin; RGM binding, fibronectin type III domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
b.1.2.1
Length = 120
Score = 90.2 bits (224), Expect = 8e-23
Identities = 26/115 (22%), Positives = 45/115 (39%), Gaps = 2/115 (1%)
Query: 87 PSNSMLVQSLEDVPSAAPEAMSAGVLNLTSAFVKWSPPPPQHHNGILLGYKIQVKAYNST 146
S + +PSA P + A +++ + W P +G L Y +
Sbjct: 5 SSGEHAPATTGPLPSA-PRDVVASLVSTRFIKLTWRTPA-SDPHGDNLTYSVFYTKEGIA 62
Query: 147 KILAQMSLNASTTSVLLNNLTSGAVYTARVVAYTRAGLGPYSAPVTLVMDPHAPP 201
+ + + + V + NL VY RV+A + G G SAP+ + P + P
Sbjct: 63 RERVENTSHPGEMQVTIQNLMPATVYIFRVMAQNKHGSGESSAPLRVETQPESGP 117
>1x5z_A Receptor-type tyrosine-protein phosphatase delta; fibronectin type
III domain containing protein, structural genomics,
NPPSFA; NMR {Homo sapiens} SCOP: b.1.2.1
Length = 115
Score = 88.2 bits (219), Expect = 4e-22
Identities = 26/116 (22%), Positives = 44/116 (37%), Gaps = 7/116 (6%)
Query: 86 QPSNSMLVQSLEDVPSAAPEAMSAGVLNLTSAFVKWSPPPPQHHNGILLGYKIQVKAYNS 145
S + V + VP P A + TS + W+PP + + Y++ K
Sbjct: 4 GSSGDIQVITQTGVPGQ-PLNFKAEPESETSILLSWTPPR----SDTIANYELVYKDGEH 58
Query: 146 TKILAQMSLNASTTSVLLNNLTSGAVYTARVVAYTRAGLGPYSAPVTLVMDPHAPP 201
+ Q TS L L ++Y R+ A + GLG +A ++ + P
Sbjct: 59 GE--EQRITIEPGTSYRLQGLKPNSLYYFRLAARSPQGLGASTAEISARTMQSSGP 112
>2ed8_A Netrin receptor DCC; tumor suppressor protein DCC, colorectal
cancer suppressor, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 106
Score = 87.3 bits (217), Expect = 6e-22
Identities = 27/107 (25%), Positives = 45/107 (42%), Gaps = 6/107 (5%)
Query: 95 SLEDVPSAAPEAMSAGVLNLTSAFVKWSPPPPQHHNGILLGYKIQVKAYNSTKILAQMSL 154
S P E + A + TS + W PP + NG + GY++ ++ K + ++
Sbjct: 3 SGSSGPGP-VENLQAVSTSPTSILITWEPPA--YANGPVQGYRLFCTEVSTGK---EQNI 56
Query: 155 NASTTSVLLNNLTSGAVYTARVVAYTRAGLGPYSAPVTLVMDPHAPP 201
S L L Y+ R +AY R G G + +T+V + P
Sbjct: 57 EVDGLSYKLEGLKKFTEYSLRFLAYNRYGPGVSTDDITVVTLSDSGP 103
>2v5y_A Receptor-type tyrosine-protein phosphatase MU; membrane, hydrolase,
glycoprotein, receptor protei tyrosine phosphatase, cell
adhesion; HET: NAG; 3.10A {Homo sapiens}
Length = 731
Score = 94.8 bits (235), Expect = 8e-22
Identities = 34/134 (25%), Positives = 54/134 (40%), Gaps = 11/134 (8%)
Query: 87 PSNSMLVQSLEDVPSAAPEAMSAGVLNLTSAFVKWSPPPPQHHNGILLGYKIQVKAYNST 146
S ++VQ+ ED+P A P G F++W P G++ Y+I KA +S
Sbjct: 449 ESQELIVQTDEDLPGAVPTESIQGSTFEEKIFLQWREPT--QTYGVITLYEITYKAVSSF 506
Query: 147 -------KILAQMSLNASTTSVLLNNLTSGAVYTARVVAYTRAGLGPYSAP--VTLVMDP 197
++S + T L L G Y+ + A T G GP + T + P
Sbjct: 507 DPEIDLSNQSGRVSKLGNETHFLFFGLYPGTTYSFTIRASTAKGFGPPATNQFTTKISAP 566
Query: 198 HAPPHALPSDILIT 211
P + L + + T
Sbjct: 567 SMPAYELETPLNQT 580
Score = 78.7 bits (193), Expect = 2e-16
Identities = 16/130 (12%), Positives = 37/130 (28%), Gaps = 6/130 (4%)
Query: 86 QPSNSMLVQSLEDVPSAAPEAMSAGVLNLTSAFVKWSPPPPQHHNGILLGYKI----QVK 141
P ++ ++ P P + + ++W P + QV
Sbjct: 345 SPGPALRTRTKCADPMRGPRKLEVVEVKSRQITIRWEPFGYNVTRCHSYNLTVHYCYQVG 404
Query: 142 AYNSTKILAQMSLNASTTSVLLNNLTSGAVYTARVVAYTRAGLGPYSAPVTLVMDPHAPP 201
+ S + NL+ + +++ G S + V P
Sbjct: 405 GQEQVREEVSWDTENSHPQHTITNLSPYTNVSVKLILMNPEGRKE-SQELI-VQTDEDLP 462
Query: 202 HALPSDILIT 211
A+P++ +
Sbjct: 463 GAVPTESIQG 472
Score = 61.7 bits (149), Expect = 9e-11
Identities = 19/123 (15%), Positives = 40/123 (32%), Gaps = 10/123 (8%)
Query: 88 SNSMLVQSLEDVPSAAPEAMSAGVLNLTSAFVKWSPPPPQHHNGILLGYKIQVKAYNSTK 147
+ + LV VP A P+ S G T +++ + + +G ++ +++ Y +
Sbjct: 252 NYAELVVKEPPVPIAPPQLASVGA---TYLWIQLNANSI-NGDGPIVAREVE---YCTAS 304
Query: 148 ILAQMSLNASTTSVLLNNLTSGAVYTARVVAYTRAGLG--PYSAPVTLVMDPHAPPHALP 205
+TS + +L Y V+ G + P P
Sbjct: 305 GSWNDRQPVDSTSYKIGHLDPDTEYEISVLLTRPGEGGTGSPGPALRTRTKCADPMRG-P 363
Query: 206 SDI 208
+
Sbjct: 364 RKL 366
Score = 54.0 bits (129), Expect = 3e-08
Identities = 24/194 (12%), Positives = 41/194 (21%), Gaps = 56/194 (28%)
Query: 87 PSNSMLVQSLEDVPSAAPEAMSAGVLNLTSAFVKWSPPPPQHHNGILLGYKIQVKAYNST 146
P + + PS P LN T V P + Y+I V+
Sbjct: 553 PPATNQFTTKISAPSM-PAYELETPLNQTDNTVTVMLKPAHSRGAPVSVYQIVVEEERPR 611
Query: 147 KILAQMSLNASTTSVLLN-----------------------------------------N 165
+ + +
Sbjct: 612 RTKKTTEILKCYPVPIHFQNASLLNSQYYFAAEFPADSLQAAQPFTIGDNKTYNGYWNTP 671
Query: 166 LTSGAVYTARVVAYTRAGLGPYSAPVTLVMDPHAPPHALPSDILITHLVLIHSPIQVPGS 225
L Y A +RA V + A P +P +
Sbjct: 672 LLPYKSYRIYFQAASRANGETKIDCVQVATKGAATPKPVPE--------------PEKQT 717
Query: 226 DRSTQSSLPHNQYH 239
D + + + H+ +H
Sbjct: 718 DHTVKGTKHHHHHH 731
Score = 27.4 bits (60), Expect = 6.5
Identities = 14/80 (17%), Positives = 24/80 (30%), Gaps = 3/80 (3%)
Query: 125 PPQHHNGILLGYKIQVKAYNSTKILAQMSLNASTTSVLLNNLTSGAVYTARVVAYTRAGL 184
L G ++ K+ + AS + N T R + T G+
Sbjct: 192 TVAGDRLWLQGIDVRDAPLKEIKVTSSRRFIASFN---VVNTTKRDAGKYRCMIRTEGGV 248
Query: 185 GPYSAPVTLVMDPHAPPHAL 204
G + +V +P P
Sbjct: 249 GISNYAELVVKEPPVPIAPP 268
>2dm4_A Sortilin-related receptor; beta-sandwich, sorting protein-related
receptor containing LDLR class A repeats, sorla; NMR
{Homo sapiens}
Length = 108
Score = 86.0 bits (213), Expect = 2e-21
Identities = 24/107 (22%), Positives = 43/107 (40%), Gaps = 4/107 (3%)
Query: 95 SLEDVPSAAPEAMSAGVLNLTSAFVKWSPPPPQHHNGILLGYKIQVKAYNSTKILAQMSL 154
S P A P + + + PP H +G++ Y ++ Y+ + S
Sbjct: 3 SGSSGPDA-PRNLQLSLPREAEGVIVGHWAPPIHTHGLIREYIVE---YSRSGSKMWASQ 58
Query: 155 NASTTSVLLNNLTSGAVYTARVVAYTRAGLGPYSAPVTLVMDPHAPP 201
A++ + NL +YT RV A T G+G +S ++ + P
Sbjct: 59 RAASNFTEIKNLLVNTLYTVRVAAVTSRGIGNWSDSKSITTIKGSGP 105
>1x5l_A Ephrin type-A receptor 8; FN3 domain, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: b.1.2.1
Length = 111
Score = 85.5 bits (212), Expect = 4e-21
Identities = 28/109 (25%), Positives = 42/109 (38%), Gaps = 4/109 (3%)
Query: 93 VQSLEDVPSAAPEAMSAGVLNLTSAFVKWSPPPPQHHNGILLGYKIQVKAYNSTKILAQM 152
S + PS + TS + W P NGI+L Y+I+ +
Sbjct: 4 GSSGQAAPSQ-VVVIRQERAGQTSVSLLWQEPE--QPNGIILEYEIKYYEKDKEMQSYST 60
Query: 153 SLNASTTSVLLNNLTSGAVYTARVVAYTRAGLGPYSAPVTLVMDPHAPP 201
L A TT ++ L G Y +V A T AG G +S + + + P
Sbjct: 61 -LKAVTTRATVSGLKPGTRYVFQVRARTSAGCGRFSQAMEVETGKPSGP 108
>2yrz_A Integrin beta-4; GP150, CD104 antigen, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 118
Score = 85.2 bits (211), Expect = 7e-21
Identities = 28/115 (24%), Positives = 43/115 (37%), Gaps = 4/115 (3%)
Query: 87 PSNSMLVQSLEDVPSAAPEAMSAGVLNLTSAFVKWSPPPPQHHNGILLGYKIQVKAYNST 146
S S + VP P + L TS V W P L GY ++ + N
Sbjct: 5 SSGSHDSRLTAGVPDT-PTRLVFSALGPTSLRVSWQEP---RCERPLQGYSVEYQLLNGG 60
Query: 147 KILAQMSLNASTTSVLLNNLTSGAVYTARVVAYTRAGLGPYSAPVTLVMDPHAPP 201
++ N + TSV++ +L Y RV A ++ G G V + + P
Sbjct: 61 ELHRLNIPNPAQTSVVVEDLLPNHSYVFRVRAQSQEGWGREREGVITIESQVSGP 115
>1cfb_A Drosophila neuroglian; neural adhesion molecule; HET: NAG; 2.00A
{Drosophila melanogaster} SCOP: b.1.2.1 b.1.2.1
Length = 205
Score = 85.9 bits (213), Expect = 3e-20
Identities = 20/111 (18%), Positives = 37/111 (33%), Gaps = 2/111 (1%)
Query: 86 QPSN-SMLVQSLEDVPSAAPEAMSAGVLNLTSAFVKWSPPPPQHHNGILLGYKIQVKAYN 144
PS S + DVP P+ + + + W+P P HN Y + K
Sbjct: 89 PPSAHSDSCTTQPDVPFKNPDNVVGQGTEPNNLVISWTPMPEIEHNAPNFHYYVSWKRDI 148
Query: 145 STKI-LAQMSLNASTTSVLLNNLTSGAVYTARVVAYTRAGLGPYSAPVTLV 194
+ ++++ + + Y +VVA G +A +
Sbjct: 149 PAAAWENNNIFDWRQNNIVIADQPTFVKYLIKVVAINDRGESNVAAEEVVG 199
Score = 59.3 bits (144), Expect = 9e-11
Identities = 26/113 (23%), Positives = 43/113 (38%), Gaps = 5/113 (4%)
Query: 97 EDVPSAAPEAMSAGVLNLTSAFVKWSPPPPQHHNGILLGYKIQVK-AYNSTKILAQMSLN 155
+DVP+A P+ A + W + +L Y IQ ++ A
Sbjct: 3 QDVPNA-PKLTGITCQA-DKAEIHWEQQG--DNRSPILHYTIQFNTSFTPASWDAAYEKV 58
Query: 156 ASTTSVLLNNLTSGAVYTARVVAYTRAGLGPYSAPVTLVMDPHAPPHALPSDI 208
+T S + ++ A YT RV+A+ + G P SA P P ++
Sbjct: 59 PNTDSSFVVQMSPWANYTFRVIAFNKIGASPPSAHSDSCTTQPDVPFKNPDNV 111
>2djs_A Ephrin type-B receptor 1; tyrosine-protein kinase receptor EPH-2,
NET, HEK6, ELK, structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: b.1.2.1
Length = 108
Score = 80.6 bits (199), Expect = 2e-19
Identities = 27/107 (25%), Positives = 41/107 (38%), Gaps = 4/107 (3%)
Query: 95 SLEDVPSAAPEAMSAGVLNLTSAFVKWSPPPPQHHNGILLGYKIQVKAYNSTKILAQMSL 154
S PS P M + S + W P NGI+L Y+I+ +
Sbjct: 3 SGSSGPSTVP-IMHQVSATMRSITLSWPQPE--QPNGIILDYEIRYYEKEHNE-FNSSMA 58
Query: 155 NASTTSVLLNNLTSGAVYTARVVAYTRAGLGPYSAPVTLVMDPHAPP 201
+ T + ++ L G VY +V A T AG G +S + + P
Sbjct: 59 RSQTNTARIDGLRPGMVYVVQVRARTVAGYGKFSGKMCFQTLTDSGP 105
>2e7h_A Ephrin type-B receptor 4; FN3 domain, tyrosine- protein kinase
receptor HTK, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 109
Score = 80.6 bits (199), Expect = 3e-19
Identities = 23/107 (21%), Positives = 39/107 (36%), Gaps = 3/107 (2%)
Query: 95 SLEDVPSAAPEAMSAGVLNLTSAFVKWSPPPPQHHNGILLGYKIQVKAYNSTKILAQMSL 154
S P A + + +S + W+ P +G +L Y+++ + + L
Sbjct: 3 SGSSGPPA-VSDIRVTRSSPSSLSLAWAVPR--APSGAVLDYEVKYHEKGAEGPSSVRFL 59
Query: 155 NASTTSVLLNNLTSGAVYTARVVAYTRAGLGPYSAPVTLVMDPHAPP 201
S L L GA Y +V A + AG GP+ + P
Sbjct: 60 KTSENRAELRGLKRGASYLVQVRARSEAGYGPFGQEHHSQTQLDSGP 106
>3l5h_A Interleukin-6 receptor subunit beta; IG-like, FNIII, cell membrane,
disulfide bond, glycoprotein, immunoglobulin domain,
membrane, phosphoprotein; HET: NAG NDG BMA FUC; 3.60A
{Homo sapiens}
Length = 589
Score = 85.8 bits (212), Expect = 8e-19
Identities = 23/102 (22%), Positives = 41/102 (40%), Gaps = 3/102 (2%)
Query: 87 PSNSMLVQSLEDVPSAAPEAMSAGVLNLTSAFVKWSPPPPQHHNGILLGYKIQVKAYNST 146
S+ + PS P + + A ++W P NG + Y I +
Sbjct: 483 SPESIKAYLKQAPPSKGPT-VRTKKVGKNEAVLEWDQLPVDVQNGFIRNYTIFYRTIIGN 541
Query: 147 KILAQMSLNASTTSVLLNNLTSGAVYTARVVAYTRAGLGPYS 188
+ +++++S T L++LTS +Y R+ AYT G
Sbjct: 542 ET--AVNVDSSHTEYTLSSLTSDTLYMVRMAAYTDEGGKDGP 581
Score = 68.1 bits (166), Expect = 6e-13
Identities = 27/136 (19%), Positives = 45/136 (33%), Gaps = 12/136 (8%)
Query: 86 QPSNSMLVQSLEDVPSAA----PEAMSAGVLNLTSAFVKWSPPPPQHHNGILLGYKIQVK 141
S + ED PS A + + + + W PP NG +L Y++ +
Sbjct: 289 DWSEEASGITYEDRPSKAPSFWYKIDPSHTQGYRTVQLVWKTLPPFEANGKILDYEVTLT 348
Query: 142 AYNSTKILAQMSLNASTTSVLLNNLTSGAVYTARVVAYTRAGLGPYSAPVTLVMD--PHA 199
+ S L ++NA+ +V L N Y A + G + D
Sbjct: 349 RWKSH--LQNYTVNATKLTVNLTNDR----YLATLTVRNLVGKSDAAVLTIPACDFQATH 402
Query: 200 PPHALPSDILITHLVL 215
P L + L +
Sbjct: 403 PVMDLKAFPKDNMLWV 418
Score = 68.1 bits (166), Expect = 7e-13
Identities = 31/182 (17%), Positives = 65/182 (35%), Gaps = 11/182 (6%)
Query: 36 KYEDGRNKYEDGRSKYEDNRSCSGMRMGEINTKMGEVNTRII-EVVVGVIRQPSNSMLVQ 94
K E +K+ D ++K + SC+ + + + E +G + S+ +
Sbjct: 138 KSEWATHKFADCKAKRDTPTSCT---VDYSTVYFVNIEVWVEAENALGKV--TSDHINFD 192
Query: 95 SLEDVPSAAPEAMSAGVLNLTSAFVKWSPPPPQHHNGILLGYKIQVKAYNST--KILAQM 152
+ V P +S S+ +K + P + I+L Y IQ + +++ +
Sbjct: 193 PVYKVKPNPPHNLSVINSEELSSILKLTWTNPSIKSVIILKYNIQYRTKDASTWSQIPPE 252
Query: 153 SLNASTTSVLLNNLTSGAVYTARVVAYTRAGLGPYS---APVTLVMDPHAPPHALPSDIL 209
++ +S + +L Y R+ G G +S + + P A
Sbjct: 253 DTASTRSSFTVQDLKPFTEYVFRIRCMKEDGKGYWSDWSEEASGITYEDRPSKAPSFWYK 312
Query: 210 IT 211
I
Sbjct: 313 ID 314
Score = 61.6 bits (149), Expect = 9e-11
Identities = 16/114 (14%), Positives = 28/114 (24%), Gaps = 3/114 (2%)
Query: 90 SMLVQSLEDVPSAAPEAMSAGVLNLTSAFVKWSPPPPQHHNGILLGYKIQVKAYNSTKIL 149
++L D + P +V+W+ P +L + +
Sbjct: 389 AVLTIPACDFQATHPVMDLKAFPKDNMLWVEWTTPRES-VKKYILEWCVLSDK-APCITD 446
Query: 150 AQMSLNASTTSVLLNNLTSGAVYTARVVAYTRAGLGPYSAPVTLVMDPHAPPHA 203
Q + L NL Y V G G + + P
Sbjct: 447 WQQEDGTVHRTYLRGNLAESKCYLITVTPVYADGPGS-PESIKAYLKQAPPSKG 499
Score = 53.1 bits (127), Expect = 4e-08
Identities = 13/126 (10%), Positives = 37/126 (29%), Gaps = 5/126 (3%)
Query: 97 EDVPSAAPEAMSAGVLNLTSAFVKWSPPPPQHHNGILLGYKIQVKAYNSTKILAQMSLNA 156
+P P+ +S V +W + + ++ + + +
Sbjct: 99 SGLPPEKPKNLSCIVNEGKKMRCEWDGGRE---THLETNFTLKSEWATHKFADCKAKRDT 155
Query: 157 STTSVLLNNLTSGAVYTARVVAYTRAGLGPYSAPVTLVMDPHAPPHALPSDILITHLVLI 216
T+ + + V A G S + P+ P ++ + + +
Sbjct: 156 PTSCTVDYSTVYFVNIEVWVEAENALGKVT-SDHINFDPVYKVKPNP-PHNLSVINSEEL 213
Query: 217 HSPIQV 222
S +++
Sbjct: 214 SSILKL 219
>1x5j_A Neogenin; RGM binding, fibronectin type III domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
b.1.2.1
Length = 113
Score = 77.2 bits (190), Expect = 6e-18
Identities = 19/109 (17%), Positives = 34/109 (31%), Gaps = 3/109 (2%)
Query: 95 SLEDVPSAAPEAMSAGVLNLTSAFVKWSPP--PPQHHNGILLGYKIQVKAYNSTKILAQM 152
S P P + A +L+ + + W+ P Y ++ K +
Sbjct: 3 SGSSGPMMPPVGVQASILSHDTIRITWADNSLPKHQKITDSRYYTVRWKTNIPANTKYKN 62
Query: 153 SLNASTTSVLLNNLTSGAVYTARVVAYTRAGLGPYSAPVTLVMDPHAPP 201
NA+T S L+ L +Y V+ +S + P
Sbjct: 63 -ANATTLSYLVTGLKPNTLYEFSVMVTKGRRSSTWSMTAHGTTFELSGP 110
>3fl7_A Ephrin receptor; ATP-binding, kinase, nucleotide-binding, transfera
phosphorylation, transmembrane, tyrosine-protein kinase,
glycoprotein; HET: NAG; 2.50A {Homo sapiens} PDB:
2x10_A* 2x11_A 3mx0_A* 3mbw_A*
Length = 536
Score = 80.2 bits (197), Expect = 5e-17
Identities = 23/106 (21%), Positives = 36/106 (33%), Gaps = 5/106 (4%)
Query: 87 PSNSMLVQSLEDVPSAAPEAMSAGVLNLTSAFVKWSPPPPQHHNGILLGYKIQVKAYNST 146
S S S+ + P + + TS V WS PP + Y++ + +
Sbjct: 428 TSRSFRTASVSINQTE-PPKVRLEGRSTTSLSVSWSIPP--PQQSRVWKYEVTYRKKGDS 484
Query: 147 KILAQMSLNASTTSVLLNNLTSGAVYTARVVAYTRAGLGPYSAPVT 192
SV L++L Y +V A T+ G G S
Sbjct: 485 NS--YNVRRTEGFSVTLDDLAPDTTYLVQVQALTQEGQGAGSKVHE 528
Score = 67.5 bits (164), Expect = 8e-13
Identities = 24/147 (16%), Positives = 42/147 (28%), Gaps = 15/147 (10%)
Query: 93 VQSLEDVPSAAPEAMSAGVLNLTSAFVKWSPPPPQHHNGILLGYKIQVKAYNSTKILAQM 152
P +AP ++A V ++W+PP + Y + +
Sbjct: 326 ASMPCTRPPSAPHYLTA-VGMGAKVELRWTPPQDSGGREDI-VYSVTCEQCWPESGECGP 383
Query: 153 S----------LNASTTSVLLNNLTSGAVYTARVVAYTRAGLGPYSAPV---TLVMDPHA 199
+ TSV +++L YT V A S ++ ++
Sbjct: 384 CEASVRYSEPPHGLTRTSVTVSDLEPHMNYTFTVEARNGVSGLVTSRSFRTASVSINQTE 443
Query: 200 PPHALPSDILITHLVLIHSPIQVPGSD 226
PP T L + S S
Sbjct: 444 PPKVRLEGRSTTSLSVSWSIPPPQQSR 470
>2vkw_A Neural cell adhesion molecule 1,140 kDa isoform; adhesion receptor;
2.3A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 PDB: 2vkx_A
1lwr_A
Length = 209
Score = 74.5 bits (183), Expect = 5e-16
Identities = 21/117 (17%), Positives = 39/117 (33%), Gaps = 3/117 (2%)
Query: 86 QPSNSMLVQSLEDVPSAAPEAMSAGVLNLTSAFVKWSPPPPQHHNGILLGYKIQVKAYNS 145
+ S + ++ +AP+ + S V + Y ++ +A +S
Sbjct: 95 EISAASEFKTQPVREPSAPKLEGQMGEDGNSIKVNLIKQD--DGGSPIRHYLVRYRALSS 152
Query: 146 TKILAQMSLNASTTSVLLNNLTSGAVYTARVVAYTRAGLGPYSAPVTLVMDPHAPPH 202
L + + V+L +L A Y VVA + G + V H H
Sbjct: 153 EWKPEI-RLPSGSDHVMLKSLDWNAEYEVYVVAENQQGKSKAAHFVFRTAAAHHHHH 208
Score = 69.8 bits (171), Expect = 2e-14
Identities = 26/118 (22%), Positives = 40/118 (33%), Gaps = 9/118 (7%)
Query: 98 DVPSAAPEAMSAGVLNLTSAFVKWSPPPPQHHNGI-LLGYKIQVKAYNS---TKILAQMS 153
D PS+ P + ++A V++ P + G+ +L YK + +A
Sbjct: 7 DTPSS-PSIDQVEPYS-STAQVQFDEP--EATGGVPILKYKAEWRAVGEEVWHSKWYDAK 62
Query: 154 LNASTTSVLLNNLTSGAVYTARVVAYTRAGLGPYSAPVTLVMDPHAPPHALPSDILIT 211
+ V + L Y R+ A GLG SA P P A P
Sbjct: 63 EASMEGIVTIVGLKPETTYAVRLAALNGKGLGEISAASEFKTQPVREPSA-PKLEGQM 119
>3t04_D Monobody 7C12; engineered binding protein, antibody mimic,
protein-protein SH2 domain, ATP-binding, phosphoprotein;
2.10A {Homo sapiens}
Length = 103
Score = 71.3 bits (175), Expect = 7e-16
Identities = 16/98 (16%), Positives = 34/98 (34%), Gaps = 3/98 (3%)
Query: 97 EDVPSAAPEAMSAGVLNLTSAFVKWSPPPPQHHNGILLGYKIQVKAYNSTKILAQMSLNA 156
S+ P + TS + W + Y+I + + ++
Sbjct: 4 GSSVSSVPTKLEVVDATPTSLKISWDAYY--SSWQNVKYYRITYGETGGDSPVQEFTVPG 61
Query: 157 STTSVLLNNLTSGAVYTARVVAYTRAGLGPY-SAPVTL 193
++ ++ L G YT V AY G ++P+++
Sbjct: 62 YYSTATISGLKPGVDYTITVYAYDTFFPGYEPNSPISI 99
>1x4x_A Fibronectin type-III domain containing protein 3A; FN3,
immunoglobulin-like beta- sandwich fold, KIAA0970,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
b.1.2.1
Length = 106
Score = 71.2 bits (175), Expect = 7e-16
Identities = 23/109 (21%), Positives = 38/109 (34%), Gaps = 6/109 (5%)
Query: 95 SLEDVPSAAPEAMSAGVLNLTSAFVKWSPPPPQHHNGILLGYKIQVKAYNSTKILAQMSL 154
S P + + T A V W P + + Y+++ + Q+
Sbjct: 3 SGSSGPDQ-CKPPQVTCRSATCAQVNWEVPL--SNGTDVTEYRLEWGGVEGSM---QICY 56
Query: 155 NASTTSVLLNNLTSGAVYTARVVAYTRAGLGPYSAPVTLVMDPHAPPHA 203
S + L+ Y RV A + G GP+S V V P + P +
Sbjct: 57 CGPGLSYEIKGLSPATTYYCRVQALSVVGAGPFSEVVACVTPPSSGPSS 105
>2edd_A Netrin receptor DCC; tumor suppressor protein DCC, colorectal
cancer suppressor, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 123
Score = 71.8 bits (176), Expect = 7e-16
Identities = 15/107 (14%), Positives = 30/107 (28%), Gaps = 3/107 (2%)
Query: 97 EDVPSAAPEAMSAGVLNLTSAFVKWSPP--PPQHHNGILLGYKIQVKAYNSTKILAQMSL 154
P P + A L + V W+ P + Y ++ + S +
Sbjct: 15 LSTPMLPPVGVQAVALTHDAVRVSWADNSVPKNQKTSEVRLYTVRWRTSFSASAKYKSE- 73
Query: 155 NASTTSVLLNNLTSGAVYTARVVAYTRAGLGPYSAPVTLVMDPHAPP 201
+ ++ S L +Y V+ +S + P
Sbjct: 74 DTTSLSYTATGLKPNTMYEFSVMVTKNRRSSTWSMTAHATTYEASGP 120
>1x5i_A Neogenin; RGM binding, fibronectin type III domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
b.1.2.1
Length = 126
Score = 71.7 bits (176), Expect = 9e-16
Identities = 21/121 (17%), Positives = 41/121 (33%), Gaps = 11/121 (9%)
Query: 87 PSNSMLVQSLEDV-----PSAAPEAMSAGVLNLTSAFVKWSPPPPQHHNGILLGYKIQVK 141
++ + ++ E P ++ L TS V W+PP ++ N ++ GY I
Sbjct: 9 ATDWLSAETFESDLDETRVPEVPSSLHVRPLV-TSIVVSWTPP--ENQNIVVRGYAIGYG 65
Query: 142 AYNSTKILAQMSLNASTTSVLLNNLTSGAVYTARVVAYTRAGLG-PYSAPVTLVMDPHAP 200
+ + ++ + NL + Y + A+ G G P P
Sbjct: 66 IGSPHAQ--TIKVDYKQRYYTIENLDPSSHYVITLKAFNNVGEGIPLYESAVTRPHTSGP 123
Query: 201 P 201
Sbjct: 124 S 124
>2dn7_A Receptor-type tyrosine-protein phosphatase F; LAR protein,
leukocyte antigen related, structural genomics, NPPSFA;
NMR {Homo sapiens} SCOP: b.1.2.1
Length = 107
Score = 69.4 bits (170), Expect = 3e-15
Identities = 25/108 (23%), Positives = 37/108 (34%), Gaps = 6/108 (5%)
Query: 95 SLEDVPSAAPEAMSAGVLNLTSAFVKWSPPPPQHHNGILLGYKIQVKAYNSTKILAQMSL 154
S P M + +A ++W PP + G LLGY++Q + + +
Sbjct: 3 SGSSGPGRPT--MMISTTAMNTALLQWHPP--KELPGELLGYRLQYCRADEAR-PNTIDF 57
Query: 155 NASTTSVLLNNLTSGAVYTARVVAYTRAGLGPYSAPVTLV-MDPHAPP 201
+ L G Y R+ A RAGLG D P
Sbjct: 58 GKDDQHFTVTGLHKGTTYIFRLAAKNRAGLGEEFEKEIRTPEDLSGPS 105
>2jll_A NCAM2, neural cell adhesion molecule 2; immunoglobulin domain,
immunoglobulin superfamily, transmembrane,
phosphoprotein, membrane, glycoprotein; HET: NAG; 2.30A
{Homo sapiens} PDB: 2xyc_A* 2jlk_A* 2doc_A
Length = 389
Score = 74.1 bits (182), Expect = 4e-15
Identities = 15/109 (13%), Positives = 35/109 (32%), Gaps = 3/109 (2%)
Query: 86 QPSNSMLVQSLEDVPSAAPEAMSAGVLNLTSAFVKWSPPPPQHHNGILLGYKIQVKAYNS 145
S + Q+L + P S + K S +L Y ++ ++ +
Sbjct: 279 DYSKIEIFQTLPVREPSPP---SIHGQPSSGKSFKLSITKQDDGGAPILEYIVKYRSKDK 335
Query: 146 TKILAQMSLNASTTSVLLNNLTSGAVYTARVVAYTRAGLGPYSAPVTLV 194
+ + + ++L +L Y ++ A R G + +
Sbjct: 336 EDQWLEKKVQGNKDHIILEHLQWTMGYEVQITAANRLGYSEPTVYEFSM 384
Score = 61.7 bits (150), Expect = 6e-11
Identities = 31/104 (29%), Positives = 46/104 (44%), Gaps = 3/104 (2%)
Query: 98 DVPSAAPEAMSAGVLNLTSAFVKWSPPPPQHHNGILLGYKIQVKAYNSTKILAQMSLNAS 157
DVPS+ P + L+ T+A V ++ P H + Y++ VK +++I + +
Sbjct: 194 DVPSS-PYGVKIIELSQTTAKVSFNKPD-SHGGVPIHHYQVDVKE-VASEIWKIVRSHGV 250
Query: 158 TTSVLLNNLTSGAVYTARVVAYTRAGLGPYSAPVTLVMDPHAPP 201
T V+LNNL Y RV A G G YS P P
Sbjct: 251 QTMVVLNNLEPNTTYEIRVAAVNGKGQGDYSKIEIFQTLPVREP 294
>2edb_A Netrin receptor DCC; tumor suppressor protein DCC, colorectal
cancer suppressor, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 116
Score = 69.0 bits (169), Expect = 5e-15
Identities = 19/117 (16%), Positives = 37/117 (31%), Gaps = 6/117 (5%)
Query: 87 PSNSMLVQSLEDVPSAAPEAMSAGVLNLTSAFVKWSPPPPQHHNGILLGYKIQVKAYNST 146
S VP P ++ + W+PP + N ++ GY I +
Sbjct: 5 SSGPENDLDESQVPDQ-PSSLHVRPQT-NCIIMSWTPP--LNPNIVVRGYIIGYGVGSPY 60
Query: 147 KILAQMSLNASTTSVLLNNLTSGAVYTARVVAYTRAGLGPYSAPVTLVMDPHAPPHA 203
+ +++ + L S + Y + A+ AG G + P +
Sbjct: 61 AE--TVRVDSKQRYYSIERLESSSHYVISLKAFNNAGEGVPLYESATTRSITSGPSS 115
>3r8q_A Fibronectin; heparin, FNIII, heparin binding, cell adhesion; 2.40A
{Homo sapiens} PDB: 1fnh_A
Length = 290
Score = 72.5 bits (178), Expect = 8e-15
Identities = 23/108 (21%), Positives = 44/108 (40%), Gaps = 5/108 (4%)
Query: 97 EDVPSAAPEAMSAGVLNLTSAFVKWSPPPPQHHNGILLGYKIQVKAYNSTKILAQMSLNA 156
+ AP + + TS +W+PP N L GY+++V T + +++L
Sbjct: 17 QGPAIPAPTDLKFTQVTPTSLSAQWTPP-----NVQLTGYRVRVTPKEKTGPMKEINLAP 71
Query: 157 STTSVLLNNLTSGAVYTARVVAYTRAGLGPYSAPVTLVMDPHAPPHAL 204
++SV+++ L Y V A + V ++ +PP
Sbjct: 72 DSSSVVVSGLMVATKYEVSVYALKDTLTSRPAQGVVTTLENVSPPRRA 119
Score = 61.7 bits (150), Expect = 3e-11
Identities = 19/100 (19%), Positives = 31/100 (31%), Gaps = 7/100 (7%)
Query: 87 PSNSMLVQSLEDVPSAAPEAMSAGVLNLTSAFVKWSPPPPQHHNGILLGYKIQVKAYNST 146
S+ +++ + + AP + S V W PP + GY I+ + S
Sbjct: 190 RSSPVVIDASTAID--APSNLRFLATTPNSLLVSWQPP-----RARITGYIIKYEKPGSP 242
Query: 147 KILAQMSLNASTTSVLLNNLTSGAVYTARVVAYTRAGLGP 186
T + L G YT V+A
Sbjct: 243 PREVVPRPRPGVTEATITGLEPGTEYTIYVIALKNNQKSE 282
Score = 59.4 bits (144), Expect = 2e-10
Identities = 13/116 (11%), Positives = 28/116 (24%), Gaps = 7/116 (6%)
Query: 100 PSAAPEAMSAGVLNLTSAFVKWSPPPPQHHNGILLGYKIQVKAYNSTKILAQMSLNASTT 159
+ P T+ + W + G+++ N + Q ++
Sbjct: 112 NVSPPRRARVTDATETTITISWRTK-----TETITGFQVDAVPANGQTPI-QRTIKPDVR 165
Query: 160 SVLLNNLTSGAVYTARVVAYTRAGLGPYSAPVTLVMDPHAPPHALPSDILITHLVL 215
S + L G Y + AP + L++
Sbjct: 166 SYTITGLQPGTDYKIYLYTLNDNARSSPVVIDAST-AIDAPSNLRFLATTPNSLLV 220
>2dtg_E Insulin receptor; IR ectodomain, X-RAY crystallography, hormone
receptor/immune system complex; 3.80A {Homo sapiens}
SCOP: b.1.2.1 b.1.2.1 b.1.2.1 c.10.2.5 c.10.2.5 g.3.9.1
PDB: 3loh_E
Length = 897
Score = 74.2 bits (181), Expect = 8e-15
Identities = 21/134 (15%), Positives = 49/134 (36%), Gaps = 9/134 (6%)
Query: 78 EVVVGVIRQPSNSMLVQSL-EDVPSAAPEAMSAGVLNLTSAFVKWSPPPPQHHNGILLGY 136
+ + + +++ E ++ + + W P NG+++ Y
Sbjct: 769 QDTPEERCSVAAYVSARTMPEAKADDIVGPVTHEIFENNVVHLMWQEPK--EPNGLIVLY 826
Query: 137 KIQVKAYNSTKILAQMS--LNASTTSVLLNNLTSGAVYTARVVAYTRAGLGPYSAPVTLV 194
++ + Y ++ + A L L+ G Y+ R+ A + AG G ++ P
Sbjct: 827 EVSYRRYGDEELHLCDTRKHFALERGCRLRGLSPGN-YSVRIRATSLAGNGSWTEPTYFY 885
Query: 195 MDPHAPPHALPSDI 208
+ + PS+I
Sbjct: 886 VTDYLDV---PSNI 896
Score = 54.5 bits (130), Expect = 2e-08
Identities = 18/115 (15%), Positives = 35/115 (30%), Gaps = 9/115 (7%)
Query: 87 PSNSMLVQSLEDVPSAAPEAMSAGVLNLTSAFVKWSPPPPQHHNGILLGYKIQVKAYNST 146
S+ + VQ+ PS P + + + +KW PP NG + Y + +
Sbjct: 582 KSDIIYVQTDATNPSV-PLDPISVSNSSSQIILKWKPPS--DPNGNITHYLVFWERQAED 638
Query: 147 KILAQMSLNASTTSVLLNNLTSGAVYTARVVAYTRAGLGPYSAPVTLVMDPHAPP 201
L L+ + L + T ++ + + P
Sbjct: 639 SEL--FELDYCLKGLKLPSRT----WSPPFESEDSQKHNQSEYEDSAGECCSCPK 687
Score = 47.6 bits (112), Expect = 3e-06
Identities = 16/178 (8%), Positives = 39/178 (21%), Gaps = 14/178 (7%)
Query: 48 RSKYEDNRSCSGMRMGEINTKMGEVNTRIIEVVV-----GVIRQPSNSMLVQSLEDVPSA 102
+E S + + K ++ +R Q P
Sbjct: 629 LVFWERQAEDSELFELDYCLKGLKLPSRTWSPPFESEDSQKHNQSEYEDSAGECCSCPKT 688
Query: 103 APEAMSAGVLNLTSAFVKWSPPP----PQHHNGILLGYKIQVKAYNSTKILAQMSLNAST 158
+ + L +S + V + + +
Sbjct: 689 DSQILKE--LEESSFRKTFEDYLHNVVFVPRPSRKRRSLGDVGNAGNNEEHRPFEKVVNK 746
Query: 159 TSVLLNNLTSGAVYTARVVAYTRAGLGPYSAP---VTLVMDPHAPPHALPSDILITHL 213
S++++ L Y + A + + V+ P A + +
Sbjct: 747 ESLVISGLRHFTGYRIELQACNQDTPEERCSVAAYVSARTMPEAKADDIVGPVTHEIF 804
Score = 47.6 bits (112), Expect = 3e-06
Identities = 19/166 (11%), Positives = 40/166 (24%), Gaps = 32/166 (19%)
Query: 66 NTKMGEVNTRIIEVVVGVIRQPSNSMLVQSLEDVPSAAPEAMSAG---VLNLTSAFVKWS 122
N K+ +E V G + + + ++ + + ++W
Sbjct: 431 NPKLCLSEIHKMEEVSGTKGRQERNDIALKTNGDQASCENELLKFSYIRTSFDKILLRWE 490
Query: 123 PPPPQHHNGILLGYKIQVK-----------------------AYNSTKILAQMSLNASTT 159
P P +L G+ + K + + + +
Sbjct: 491 PYWPPDFRDLL-GFMLFYKEAPYQNVTEFDGQDACGSNSWTVVDIDPPLRSNDPKSQNHP 549
Query: 160 SVLLNNLTSGAVYTARVVAYTRAG-----LGPYSAPVTLVMDPHAP 200
L+ L Y V G S + + D P
Sbjct: 550 GWLMRGLKPWTQYAIFVKTLVTFSDERRTYGAKSDIIYVQTDATNP 595
>1x5a_A Ephrin type-A receptor 1; tyrosine-protein kinase receptor, ESK,
fibronectin type III (FN3) domain, structural genomics,
NPPSFA; NMR {Mus musculus} SCOP: b.1.2.1
Length = 107
Score = 67.1 bits (164), Expect = 2e-14
Identities = 21/102 (20%), Positives = 34/102 (33%), Gaps = 6/102 (5%)
Query: 100 PSAAPEAMSAGVLNLTSAFVKWSPPPPQHHNGILLGYKIQVKAYNSTKILAQMSLNASTT 159
S + ++ + W+ P++ G L Y++ V + +
Sbjct: 9 ESLSGLSLKLVKKEPRQLELTWAGSRPRNPGGNL-SYELHVLNQDE-----EWHQMVLEP 62
Query: 160 SVLLNNLTSGAVYTARVVAYTRAGLGPYSAPVTLVMDPHAPP 201
VLL L Y RV T G GP+S P + P
Sbjct: 63 RVLLTKLQPDTTYIVRVRTLTPLGPGPFSPDHEFRTSPPSGP 104
>2e3v_A Neural cell adhesion molecule 1, 140 kDa isoform; NCAM, N-CAM 1,
NCAM-120, CD56 antigen, membra protein, glycoprotein,
structural genomics, NPPSFA; HET: PGE BTB; 1.95A {Homo
sapiens}
Length = 122
Score = 67.1 bits (164), Expect = 3e-14
Identities = 23/109 (21%), Positives = 35/109 (32%), Gaps = 6/109 (5%)
Query: 100 PSAAPEAMSAGVLNLT--SAFVKWSPPPPQHHNGILLGYKIQVKAYNS---TKILAQMSL 154
S+ P + S + +A V++ P +L YK + +A
Sbjct: 4 GSSGPSSPSIDQVEPYSSTAQVQFDEPE-ATGGVPILKYKAEWRAVGEEVWHSKWYDAKE 62
Query: 155 NASTTSVLLNNLTSGAVYTARVVAYTRAGLGPYSAPVTLVMDPHAPPHA 203
+ V + L Y R+ A GLG SA P P A
Sbjct: 63 ASMEGIVTIVGLKPETTYAVRLAALNGKGLGEISAASEFKTQPVREPSA 111
>2ibg_A CG9211-PA, GH03927P; IHOG, fibronectin type III, protein binding;
2.20A {Drosophila melanogaster} SCOP: b.1.2.1 b.1.2.1
PDB: 2ibb_A
Length = 214
Score = 69.1 bits (169), Expect = 4e-14
Identities = 19/114 (16%), Positives = 39/114 (34%), Gaps = 6/114 (5%)
Query: 86 QPSNS----MLVQSLEDVPSAAPEAMSAGVLNLTSAFVKWSPPPPQHHNGILLGYKIQVK 141
+ SN+ L P PE + + T+ + WS ++ GY +
Sbjct: 97 KESNTSAKFYLQPGAALDPMPVPELLEIEEYSETAVVLHWSLAS-DADEHLITGYYAYYR 155
Query: 142 AYNS-TKILAQMSLNASTTSVLLNNLTSGAVYTARVVAYTRAGLGPYSAPVTLV 194
+S + A S + L + +Y ++ +++ A +SA
Sbjct: 156 PSSSAGEYFKATIEGAHARSFKIAPLETATMYEFKLQSFSAASASEFSALKQGR 209
Score = 52.5 bits (126), Expect = 2e-08
Identities = 17/129 (13%), Positives = 33/129 (25%), Gaps = 22/129 (17%)
Query: 99 VPSAAPEAMSAGVLNLTSAFVKWSPPPPQHHNGILLGYKIQVKAYNSTK----------- 147
P P S ++W P ++ ++ +K+Q + K
Sbjct: 3 YPPTPPNVTRLSD---ESVMLRWMVP--RNDGLPIVIFKVQYRMVGKRKNWQTTNDNIPY 57
Query: 148 -ILAQMSLNASTTSVLLNNLTSGAVYTARVVAYTRAGLGPYSAPVTLVM----DPHAPPH 202
S + + + +L Y R++A S P
Sbjct: 58 GKPKWNSELGKSFTASVTDLKPQHTYRFRILAVYSNNDNKESNTSAKFYLQPGAALDPMP 117
Query: 203 ALPSDILIT 211
P + I
Sbjct: 118 V-PELLEIE 125
>3qht_C Monobody YSMB-1; fibronectin type III, yeast small ubiquitin-like
modifier, S NOVO protein; 2.40A {Artificial gene}
Length = 97
Score = 65.5 bits (160), Expect = 6e-14
Identities = 17/95 (17%), Positives = 35/95 (36%), Gaps = 6/95 (6%)
Query: 100 PSAAPEAMSAGVLNLTSAFVKWSPPPPQHHNGILLGYKIQVKAYNSTKILAQMSLNASTT 159
S+ P + TS + W + Y+I + + ++ S++
Sbjct: 4 VSSVPTKLEVVAATPTSLLISWDASS-----SSVSYYRITYGETGGNSPVQEFTVPGSSS 58
Query: 160 SVLLNNLTSGAVYTARVVAYTRAGLGPY-SAPVTL 193
+ ++ L+ G YT V AY Y +P ++
Sbjct: 59 TATISGLSPGVDYTITVYAYYSYYDLYYSYSPSSI 93
>3lpw_A A77-A78 domain from titin; intracellular FNIII-tandem, structural
protein; 1.65A {Homo sapiens}
Length = 197
Score = 68.1 bits (167), Expect = 7e-14
Identities = 24/114 (21%), Positives = 42/114 (36%), Gaps = 5/114 (4%)
Query: 98 DVPSAAPEAMSAGVLNLTSAFVKWSPPPPQHHNGILLGYKIQVKAYNSTKILAQMSLNAS 157
D P P+ + + TS + W PP + I Y ++ + + ++ N
Sbjct: 4 DTPGP-PQDLKVKEVTKTSVTLTWDPPLLDGGSKIK-NYIVEKRESTRKAY-STVATNCH 60
Query: 158 TTSVLLNNLTSGAVYTARVVAYTRAGLGPYSAPVTLVMDPHAPPHALPSDILIT 211
TS ++ L G Y RV+A G+G + + P P I +
Sbjct: 61 KTSWKVDQLQEGCSYYFRVLAENEYGIGLPAETAE-SVKASERPLP-PGKITLM 112
Score = 67.8 bits (166), Expect = 9e-14
Identities = 20/109 (18%), Positives = 35/109 (32%), Gaps = 4/109 (3%)
Query: 86 QPSNSMLVQSLEDVPSAAPEAMSAGVLNLTSAFVKWSPPPPQHHNGILLGYKIQVKAYNS 145
P+ + + P P ++ + S + W P +LGY ++++ S
Sbjct: 89 LPAETAESVKASERPLP-PGKITLMDVTRNSVSLSWEKPE-HDGGSRILGYIVEMQTKGS 146
Query: 146 TKILAQMSLNASTTSVLLNNLTSGAVYTARVVAYTRAGLGPYSAPVTLV 194
K T + L G Y+ RV A G+ V
Sbjct: 147 DK--WATCATVKVTEATITGLIQGEEYSFRVSAQNEKGISDPRQLSVPV 193
>3t1w_A Four-domain fibronectin fragment; human fibronectin, FN type-III
domain, oncofetal splice VARI extra-domain B, EIIIB,
ED-B, angiogenesis, integrin; 2.40A {Homo sapiens}
Length = 375
Score = 69.8 bits (171), Expect = 1e-13
Identities = 19/116 (16%), Positives = 40/116 (34%), Gaps = 7/116 (6%)
Query: 87 PSNSMLVQSLEDVPSAAPEAMSAGVLNLTSAFVKWSPPPPQHHNGILLGYKIQVKAYNST 146
S + + +VP +S + +S ++W+P + ++GY+I V A
Sbjct: 84 ESVPISDTIIPEVPQ--LTDLSFVDITDSSIGLRWTPLN----SSTIIGYRITVVAAGEG 137
Query: 147 KILAQMSLNASTTSVLLNNLTSGAVYTARVVAYTRAGLGPYSAPVTLVMDPHAPPH 202
+ + +++S + L G Y V+ G + P
Sbjct: 138 IPIFEDFVDSSVGYYTVTGLEPGIDYDISVITLINGGESAPTTLTQQT-AVPPPTD 192
Score = 69.5 bits (170), Expect = 2e-13
Identities = 21/110 (19%), Positives = 37/110 (33%), Gaps = 5/110 (4%)
Query: 93 VQSLEDVPSAAPEAMSAGVLNLTSAFVKWSPPPPQHHNGILLGYKIQVKAYNSTKILAQM 152
++ + +P + + S V W P + GY+I+ + + +
Sbjct: 270 LRGRQKTGLDSPTGIDFSDITANSFTVHWIAP-----RATITGYRIRHHPEHFSGRPRED 324
Query: 153 SLNASTTSVLLNNLTSGAVYTARVVAYTRAGLGPYSAPVTLVMDPHAPPH 202
+ S S+ L NLT G Y +VA P + H H
Sbjct: 325 RVPHSRNSITLTNLTPGTEYVVSIVALNGREESPLLIGQQSTVSAHHHHH 374
Score = 67.5 bits (165), Expect = 6e-13
Identities = 18/106 (16%), Positives = 38/106 (35%), Gaps = 5/106 (4%)
Query: 97 EDVPSAAPEAMSAGVLNLTSAFVKWSPPPPQHHNGILLGYKIQVKAYNSTKILAQMSLNA 156
+ P + + + V W+PPP + L + ++ + + +A++S++
Sbjct: 183 QQTAVPPPTDLRFTNIGPDTMRVTWAPPP----SIDLTNFLVRYSPVKNEEDVAELSISP 238
Query: 157 STTSVLLNNLTSGAVYTARVVAYTRAGLGPYSAPVTLVMDPHAPPH 202
S +V+L NL G Y V + +P
Sbjct: 239 SDNAVVLTNLLPGTEYVVSVSSVYEQHEST-PLRGRQKTGLDSPTG 283
Score = 59.4 bits (144), Expect = 3e-10
Identities = 21/115 (18%), Positives = 39/115 (33%), Gaps = 12/115 (10%)
Query: 99 VPSAAPEAMSAGVLNLTSAF-VKWSPPPPQHHNGILLGYKIQVKAYNSTKILA-QMSLNA 156
+P + P + T V W + GY+I N + + + ++A
Sbjct: 1 MPLSPPTNLHLEANPDTGVLTVSWERST----TPDITGYRITTTPTNGQQGNSLEEVVHA 56
Query: 157 STTSVLLNNLTSGAVYTARVVAYTRAGLGPYSAPVTLVMDPHAPPHALPSDILIT 211
+S +NL+ G Y V S P++ + P P +D+
Sbjct: 57 DQSSCTFDNLSPGLEYNVSVYTVKD---DKESVPISDTIIPEVPQ---LTDLSFV 105
>1fnf_A Fibronectin; RGD, extracellular matrix, cell adhesion protein;
2.00A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 b.1.2.1
b.1.2.1 PDB: 1mfn_A 2mfn_A 2ck2_A
Length = 368
Score = 69.1 bits (169), Expect = 2e-13
Identities = 21/112 (18%), Positives = 37/112 (33%), Gaps = 7/112 (6%)
Query: 93 VQSLEDVPSAAPEAMSAGVLNLTSAFVKWSPPPPQHHNGILLGYKIQVKAYNSTKILAQM 152
++ + +P + + S V W P + GY+I+ + + +
Sbjct: 178 LRGRQKTGLDSPTGIDFSDITANSFTVHWIAP-----RATITGYRIRHHPEHFSGRPRED 232
Query: 153 SLNASTTSVLLNNLTSGAVYTARVVAYTRAGLGPYSAPVTLVMDPHAPPHAL 204
+ S S+ L NLT G Y +VA P + P L
Sbjct: 233 RVPHSRNSITLTNLTPGTEYVVSIVALNGREESPLL--IGQQSTVSDVPRDL 282
Score = 68.3 bits (167), Expect = 3e-13
Identities = 23/116 (19%), Positives = 41/116 (35%), Gaps = 6/116 (5%)
Query: 78 EVVVGVIRQPSNSMLVQSLEDVPSAAPEAMSAGVLNLTSAFVKWSPPPPQHHNGILLGYK 137
V + + S L+ + S P + TS + W P + Y+
Sbjct: 253 VVSIVALNGREESPLLIGQQSTVSDVPRDLEVVAATPTSLLISWDAP-----AVTVRYYR 307
Query: 138 IQVKAYNSTKILAQMSLNASTTSVLLNNLTSGAVYTARVVAYTRAGLGPYS-APVT 192
I + + ++ S ++ ++ L G YT V A T G P S P++
Sbjct: 308 ITYGETGGNSPVQEFTVPGSKSTATISGLKPGVDYTITVYAVTGRGDSPASSKPIS 363
Score = 64.9 bits (158), Expect = 4e-12
Identities = 21/117 (17%), Positives = 42/117 (35%), Gaps = 8/117 (6%)
Query: 88 SNSMLVQSLEDVPSAAPEAMSAGVLNLTSAFVKWSPPPPQHHNGILLGYKIQVKAYNSTK 147
S + + VP P + + + V W+PPP + L + ++ + +
Sbjct: 84 SVPISDTIIPAVP--PPTDLRFTNIGPDTMRVTWAPPP----SIDLTNFLVRYSPVKNEE 137
Query: 148 ILAQMSLNASTTSVLLNNLTSGAVYTARVVAYTRAGLGPYSAPVTLVMDPHAPPHAL 204
+A++S++ S +V+L NL G Y V + P +
Sbjct: 138 DVAELSISPSDNAVVLTNLLPGTEYVVSVSSVYEQHESTPL--RGRQKTGLDSPTGI 192
Score = 57.5 bits (139), Expect = 1e-09
Identities = 24/116 (20%), Positives = 43/116 (37%), Gaps = 12/116 (10%)
Query: 100 PSAAPEAMSAGVLNLTSAF-VKWSPPPPQHHNGILLGYKIQVKAYNSTKILA-QMSLNAS 157
P + P + T V W + GY+I N + + + ++A
Sbjct: 1 PLSPPTNLHLEANPDTGVLTVSWERST----TPDITGYRITTTPTNGQQGNSLEEVVHAD 56
Query: 158 TTSVLLNNLTSGAVYTARVVAYTRAGLGPYSAPVTLVMDPHAPPHALPSDILITHL 213
+S +NL+ G Y V S P++ + P PP P+D+ T++
Sbjct: 57 QSSCTFDNLSPGLEYNVSVYTVKDDK---ESVPISDTIIPAVPP---PTDLRFTNI 106
>2gee_A Hypothetical protein; fibronectin, EIIIB, cancer,
neovascularization, cell adhesion, protein binding,
oncoprotein; 2.01A {Homo sapiens} PDB: 2fnb_A
Length = 203
Score = 66.4 bits (162), Expect = 3e-13
Identities = 19/109 (17%), Positives = 42/109 (38%), Gaps = 4/109 (3%)
Query: 78 EVVVGVIRQPSNSMLVQSLEDVPSAAPEAMSAGVLNLTSAFVKWSPPPPQHHNGILLGYK 137
++ V ++ S + P + + + V W+PPP + L +
Sbjct: 91 DISVYTVKNGGESTPTTLTQQTAVPPPTDLRFTNIGPDTMRVTWAPPP----SIDLTNFL 146
Query: 138 IQVKAYNSTKILAQMSLNASTTSVLLNNLTSGAVYTARVVAYTRAGLGP 186
++ + + +A++S++ S +V+L NL G Y V +
Sbjct: 147 VRYSPVKNEEDVAELSISPSDNAVVLTNLLPGTEYVVSVSSVYEQHEST 195
Score = 64.5 bits (157), Expect = 2e-12
Identities = 21/115 (18%), Positives = 40/115 (34%), Gaps = 7/115 (6%)
Query: 88 SNSMLVQSLEDVPSAAPEAMSAGVLNLTSAFVKWSPPPPQHHNGILLGYKIQVKAYNSTK 147
S + S +VP P +S + +S ++W+P + ++GY+I V A
Sbjct: 12 SGLVPRGSHMEVP--QPTDLSFVDITDSSIGLRWTPLN----SSTIIGYRITVVAAGEGI 65
Query: 148 ILAQMSLNASTTSVLLNNLTSGAVYTARVVAYTRAGLGPYSAPVTLVMDPHAPPH 202
+ + +++S + L G Y V G + P
Sbjct: 66 PIFEDFVDSSVGYYTVTGLEPGIDYDISVYTVKNGGESTPTTLTQQT-AVPPPTD 119
>3k2m_C Monobody HA4; engineered binding protein, antibody mimic,
protein-protein SH2 domain, ATP-binding, phosphoprotein;
1.75A {Homo sapiens} PDB: 3uyo_D 1ttf_A 1ttg_A 3rzw_A
1fna_A
Length = 101
Score = 63.6 bits (155), Expect = 3e-13
Identities = 17/96 (17%), Positives = 38/96 (39%), Gaps = 5/96 (5%)
Query: 100 PSAAPEAMSAGVLNLTSAFVKWSPPPPQHHNGILLGYKIQVKAYNSTKILAQMSLNASTT 159
S+ P + TS + W P + + Y+I + + ++ S++
Sbjct: 4 VSSVPTKLEVVAATPTSLLISWDAPMS---SSSVYYYRITYGETGGNSPVQEFTVPYSSS 60
Query: 160 SVLLNNLTSGAVYTARVVAYTRAGLGP--YSAPVTL 193
+ ++ L+ G YT V A+ G +P+++
Sbjct: 61 TATISGLSPGVDYTITVYAWGEDSAGYMFMYSPISI 96
>1wf5_A Sidekick 2 protein; FNIII domain, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: b.1.2.1
Length = 121
Score = 64.3 bits (157), Expect = 4e-13
Identities = 25/106 (23%), Positives = 42/106 (39%), Gaps = 5/106 (4%)
Query: 98 DVPSAAPEAMSAGVLNLTSAFV--KWSPPPPQHHNGILLGYKIQVKAYNSTKILAQMSLN 155
+P A PE A + + + W+ P N L+ Y +++ N+ + S++
Sbjct: 16 QLPHA-PEHPVATLSTVERRAINLTWTKPFD--GNSPLIRYILEMSENNAPWTVLLASVD 72
Query: 156 ASTTSVLLNNLTSGAVYTARVVAYTRAGLGPYSAPVTLVMDPHAPP 201
TSV + L Y R+ A G G +S V P + P
Sbjct: 73 PKATSVTVKGLVPARSYQFRLCAVNDVGKGQFSKDTERVSLPESGP 118
>2ekj_A Collagen alpha-1(XX) chain; KIAA1510, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 105
Score = 63.6 bits (155), Expect = 4e-13
Identities = 20/102 (19%), Positives = 34/102 (33%), Gaps = 5/102 (4%)
Query: 100 PSAAPEAMSAGVLNLTSAFVKWSPPPPQHHNGILLGYKIQVKAYNSTKILAQMSLNASTT 159
+ P ++ S V W+PP G +L Y + + +S+ + +
Sbjct: 7 GRSPPSNLALASETPDSLQVSWTPP-----LGRVLHYWLTYAPASGLGPEKSVSVPGARS 61
Query: 160 SVLLNNLTSGAVYTARVVAYTRAGLGPYSAPVTLVMDPHAPP 201
V L +L + Y V A AG + P P
Sbjct: 62 HVTLPDLQAATKYRVLVSAIYAAGRSEAVSATGQTACPSGPS 103
>2db8_A Tripartite motif protein 9, isoform 2; ring finger protein 91,
TRIM9, KIAA0282, RNF91, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 110
Score = 63.6 bits (155), Expect = 5e-13
Identities = 23/104 (22%), Positives = 40/104 (38%), Gaps = 4/104 (3%)
Query: 98 DVPSAAPEAMSAGVLNLTSAFVKWSPPPPQHHNGILLGYKIQVKAYNSTKILAQMSLNAS 157
VP+ + + SA + W PP GY +++ N + +
Sbjct: 8 PVPATPILQLEECCTHNNSATLSWKQPP--LSTVPADGYILELDDGNGGQF--REVYVGK 63
Query: 158 TTSVLLNNLTSGAVYTARVVAYTRAGLGPYSAPVTLVMDPHAPP 201
T ++ L + Y ARV A+ + G+ PYS + L + P
Sbjct: 64 ETMCTVDGLHFNSTYNARVKAFNKTGVSPYSKTLVLQTSEGSGP 107
>2rb8_A Tenascin; beta sheet,loop design, alternative splicing, cell
adhesion, coiled coil, EGF-like domain, extracellular
matrix, glycoprotein; 1.45A {Homo sapiens} PDB: 2rbl_A
1ten_A
Length = 104
Score = 63.2 bits (154), Expect = 5e-13
Identities = 15/101 (14%), Positives = 31/101 (30%), Gaps = 6/101 (5%)
Query: 103 APEAMSAGVLNLTSAFVKWSPPPPQHHNGILLGYKIQVKAYNSTKILAQMSLNASTTSVL 162
AP + + T+A + W PP + + G+++ + + L
Sbjct: 5 APSQIEVKDVTDTTALITWMPP-----SQPVDGFELTYGIKDVPGDRTTIDLTEDENQYS 59
Query: 163 LNNLTSGAVYTARVVAYTRAGLG-PYSAPVTLVMDPHAPPH 202
+ NL Y +++ P T + H
Sbjct: 60 IGNLKPDTEYEVSLISRRGDMSSNPAKETFTTGLAAALEHH 100
>3b83_A Ten-D3; beta sheet, computational redesigned protein, alternative
splicing, cell adhesion, coiled coil, EGF-like domain,
extracellular matrix; 2.40A {Homo sapiens}
Length = 100
Score = 62.4 bits (152), Expect = 1e-12
Identities = 26/101 (25%), Positives = 35/101 (34%), Gaps = 6/101 (5%)
Query: 103 APEAMSAGVLNLTSAFVKWSPPPPQHHNGILLGYKIQVKAYNSTKILAQMSLNASTTSVL 162
P + + LT+A V W PP + G + N + L +S TS+
Sbjct: 4 PPFNIKVTNITLTTAVVTWQPPILP-----IEGILVTFGRKNDPSDETTVDLTSSITSLT 58
Query: 163 LNNLTSGAVYTARVVAYTRAGLG-PYSAPVTLVMDPHAPPH 202
L NL Y R+VA P S T H H
Sbjct: 59 LTNLEPNTTYEIRIVARNGQQYSPPVSTTFTTGSLEHHHHH 99
>2haz_A N-CAM 1, neural cell adhesion molecule 1; fibronectin type III
repeat, FN1, beta sandwich; 1.70A {Homo sapiens} SCOP:
b.1.2.1
Length = 105
Score = 62.4 bits (152), Expect = 1e-12
Identities = 22/104 (21%), Positives = 34/104 (32%), Gaps = 6/104 (5%)
Query: 97 EDVPSAAPEAMSAGVLNLTSAFVKWSPPPPQHHNGILLGYKIQVKAYNS---TKILAQMS 153
D PS+ P + ++A V++ P +L YK + +A
Sbjct: 4 MDTPSS-PSIDQVEPYS-STAQVQFDEPE-ATGGVPILKYKAEWRAVGEEVWHSKWYDAK 60
Query: 154 LNASTTSVLLNNLTSGAVYTARVVAYTRAGLGPYSAPVTLVMDP 197
+ V + L Y R+ A GLG SA P
Sbjct: 61 EASMEGIVTIVGLKPETTYAVRLAALNGKGLGEISAASEFKTQP 104
>1bqu_A Protein (GP130); cytokine receptor, glycoprotein 130, interleukine
6 R beta subunit, signaling protein; 2.00A {Homo
sapiens} SCOP: b.1.2.1 b.1.2.1 PDB: 1pvh_A 1bj8_A
Length = 215
Score = 65.0 bits (158), Expect = 1e-12
Identities = 30/174 (17%), Positives = 64/174 (36%), Gaps = 9/174 (5%)
Query: 36 KYEDGRNKYEDGRSKYEDNRSCSGMRMGEINTKMGEVNTRIIEVVVGVIRQPSNSMLVQS 95
K E +K+ D ++K + SC+ + + EV +E + + S+ +
Sbjct: 43 KSEWATHKFADCKAKRDTPTSCT-VDYSTVYFVNIEVW---VEAENALGKVTSDHINFDP 98
Query: 96 LEDVPSAAPEAMSAGVLNLTSAFVKWSPPPPQHHNGILLGYKIQVKAYNST--KILAQMS 153
+ V P +S S+ +K + P + I+L Y IQ + +++ +
Sbjct: 99 VYKVKPNPPHNLSVINSEELSSILKLTWTNPSIKSVIILKYNIQYRTKDASTWSQIPPED 158
Query: 154 LNASTTSVLLNNLTSGAVYTARVVAYTRAGLGPYSA---PVTLVMDPHAPPHAL 204
++ +S + +L Y R+ G G +S + + P
Sbjct: 159 TASTRSSFTVQDLKPFTEYVFRIRCMKEDGKGYWSDWSEEASGITYEDRPSKEP 212
Score = 35.7 bits (82), Expect = 0.009
Identities = 12/114 (10%), Positives = 32/114 (28%), Gaps = 5/114 (4%)
Query: 99 VPSAAPEAMSAGVLNLTSAFVKWSPPPPQHHNGILLGYKIQVKAYNSTKILAQMSLNAST 158
+P P+ +S V +W + + ++ + + + T
Sbjct: 6 LPPEKPKNLSCIVNEGKKMRCEWDGGRE---THLETNFTLKSEWATHKFADCKAKRDTPT 62
Query: 159 TSVLLNNLTSGAVYTARVVAYTRAGLGPYSAPVTLVMDPHAPPHALPSDILITH 212
+ + + V A G S + P+ P ++ + +
Sbjct: 63 SCTVDYSTVYFVNIEVWVEAENALGKVT-SDHINFDPVYKVKPNP-PHNLSVIN 114
>1zlg_A Anosmin 1; insulin-like growth factor receptor Cys-rich fold, WHEY
acidic protein fold, fibronectin type III fold, hormone-
growth factor complex; NMR {Homo sapiens}
Length = 680
Score = 65.8 bits (159), Expect = 4e-12
Identities = 27/173 (15%), Positives = 49/173 (28%), Gaps = 15/173 (8%)
Query: 85 RQPSNSMLVQSLEDVPSAAPEAMSAGVLNLT-------SAFVKWSPPPPQHHNGILLGYK 137
R + PSA P + + N T + + W P + + YK
Sbjct: 249 RGFTAPSKHFRSSKDPSAPPAPANLRLANSTVNSDGSVTVTIVWDLPE--EPDIPVHHYK 306
Query: 138 I------QVKAYNSTKILAQMSLNASTTSVLLNNLTSGAVYTARVVAYTRAGLGPYSAPV 191
+ K+ TK + + + SV+L L Y + A T G +
Sbjct: 307 VFWSWMVSSKSLVPTKKKRRKTTDGFQNSVILEKLQPDCDYVVELQAITYWGQTRLKSAK 366
Query: 192 TLVMDPHAPPHALPSDILITHLVLIHSPIQVPGSDRSTQSSLPHNQYHSGTRQ 244
+ ++ T I + + + + Y G Q
Sbjct: 367 VSLHFTSTHATNNKEQLVKTRKGGIQTQLPFQRRRPTRPLEVGAPFYQDGQLQ 419
Score = 63.1 bits (152), Expect = 3e-11
Identities = 28/174 (16%), Positives = 49/174 (28%), Gaps = 26/174 (14%)
Query: 87 PSNSMLVQSLEDVPSAAPEAMSAGVLNL---TSAFVKWSPPPPQHHNGILLGYKIQVKAY 143
L V + PE +SA + + W + G+++
Sbjct: 512 GCLGEAGHVLSKVLAK-PENLSASFIVQDVNITGHFSWKMAKANL-YQPMTGFQVTWAEV 569
Query: 144 NS---------TKILAQMSLNASTTSVLLNNLTSGAVYTARVVAYTRAGLGPYSAPVTLV 194
+ + I L + + + NL +Y V T G GP +
Sbjct: 570 TTESRQNSLPNSIISQSQILPSDHYVLTVPNLRPSTLYRLEVQVLTPGGEGPATIKT--F 627
Query: 195 MDPHAPPHALPSDILITHLVLIH---------SPIQVPGSDRSTQSSLPHNQYH 239
P PP + + H H PI P + + H+ +H
Sbjct: 628 RTPELPPSS-AHRSHLKHRHPHHYKPSPERYGKPIPNPLLGLDSTRTGHHHHHH 680
Score = 58.8 bits (141), Expect = 7e-10
Identities = 24/124 (19%), Positives = 38/124 (30%), Gaps = 11/124 (8%)
Query: 87 PSNSMLVQSLEDVPSAAPEAMSAGVLNLTSAFVKWSPPPPQHHNGILLGYKIQVK-AYNS 145
+ + + VP + + L VKWS + Y +Q + Y
Sbjct: 147 HTCQVPKTLYKGVPLKPRKELRFTELQSGQLEVKWSSKFNISIEPV--IYVVQRRWNYGI 204
Query: 146 TKILAQMS-----LNASTTSVLLNNLTSGAVYTARVVAYTRAGLGPYSAPV---TLVMDP 197
+ + V L ++ Y RV A G ++AP DP
Sbjct: 205 HPSEDDATHWQTVAQTTDERVQLTDIRPSRWYQFRVAAVNVHGTRGFTAPSKHFRSSKDP 264
Query: 198 HAPP 201
APP
Sbjct: 265 SAPP 268
Score = 47.6 bits (112), Expect = 3e-06
Identities = 16/130 (12%), Positives = 30/130 (23%)
Query: 113 NLTSAFVKWSPPPPQHHNGILLGYKIQVKAYNSTKILAQMSLNASTTSVLLNNLTSGAVY 172
V W N + + + A+N T S ++L +L+ Y
Sbjct: 416 GQLQVKVYWKKTEDPTVNRYHVRWFPEACAHNRTTGSEASSGMTHENYIILQDLSFSCKY 475
Query: 173 TARVVAYTRAGLGPYSAPVTLVMDPHAPPHALPSDILITHLVLIHSPIQVPGSDRSTQSS 232
V A A I + + + S
Sbjct: 476 KVTVQPIRPKSHSKAEAVFFTTPPCSALKGKSHKPIGCLGEAGHVLSKVLAKPENLSASF 535
Query: 233 LPHNQYHSGT 242
+ + +G
Sbjct: 536 IVQDVNITGH 545
>2ee3_A Collagen alpha-1(XX) chain; KIAA1510, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 108
Score = 60.9 bits (148), Expect = 4e-12
Identities = 23/108 (21%), Positives = 36/108 (33%), Gaps = 9/108 (8%)
Query: 100 PSAAPEAMSAGVLNLTSAFVKWSPPPPQHHNGILLGYKIQVKAYNSTKILAQMSLNASTT 159
A P + ++ +A V W P + ++ + Q + T
Sbjct: 7 GLAPPRHLGFSDVSHDAARVFWEGAP-----RPVRLVRVTYVSSEGGHS-GQTEAPGNAT 60
Query: 160 SVLLNNLTSGAVYTARVVAYTRAGLG-PYSAPVTLVMDPHAPPHALPS 206
S +L L+S YT RV G + VT P P + PS
Sbjct: 61 SAMLGPLSSSTTYTVRVTCLYPGGGSSTLTGRVTTKKAP--SPSSGPS 106
>2crz_A Fibronectin type-III domain containing protein 3A; structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
b.1.2.1
Length = 110
Score = 60.8 bits (148), Expect = 5e-12
Identities = 17/89 (19%), Positives = 35/89 (39%), Gaps = 3/89 (3%)
Query: 115 TSAFVKWSPPPPQHHNGILLGYKIQVKAYNSTKILAQMSLNASTTSVLLNNLTSGAVYTA 174
++W PP + I Y +++ + + S +++L G Y+
Sbjct: 24 KEIQLRWGPPLVDGGSPIS-CYSVEMSPIEKDEP--REVYQGSEVECTVSSLLPGKTYSF 80
Query: 175 RVVAYTRAGLGPYSAPVTLVMDPHAPPHA 203
R+ A + G GP+S + P + P +
Sbjct: 81 RLRAANKMGFGPFSEKCDITTAPGSGPSS 109
>1i1r_A GP130, interleukin-6 receptor beta chain; cytokine/receptor
complex, GP130; 2.40A {Homo sapiens} SCOP: b.1.2.1
b.1.2.1 b.1.2.1 PDB: 1p9m_A
Length = 303
Score = 64.5 bits (156), Expect = 5e-12
Identities = 29/157 (18%), Positives = 61/157 (38%), Gaps = 6/157 (3%)
Query: 36 KYEDGRNKYEDGRSKYEDNRSCSGMRMGEINTKMGEVNTRIIEVVVGVIRQPSNSMLVQS 95
K E +K+ D ++K + SC+ + + EV +E + + S+ +
Sbjct: 139 KSEWATHKFADCKAKRDTPTSCT-VDYSTVYFVNIEVW---VEAENALGKVTSDHINFDP 194
Query: 96 LEDVPSAAPEAMSAGVLNLTSAFVKWSPPPPQHHNGILLGYKIQVKAYNST--KILAQMS 153
+ V P +S S+ +K + P + I+L Y IQ + +++ +
Sbjct: 195 VYKVKPNPPHNLSVINSEELSSILKLTWTNPSIKSVIILKYNIQYRTKDASTWSQIPPED 254
Query: 154 LNASTTSVLLNNLTSGAVYTARVVAYTRAGLGPYSAP 190
++ +S + +L Y R+ G G +S
Sbjct: 255 TASTRSSFTVQDLKPFTEYVFRIRCMKEDGKGYWSDW 291
>2dju_A Receptor-type tyrosine-protein phosphatase F; LAR protein,
leukocyte antigen related, structural genomics, NPPSFA;
NMR {Homo sapiens}
Length = 106
Score = 59.2 bits (144), Expect = 1e-11
Identities = 23/108 (21%), Positives = 38/108 (35%), Gaps = 6/108 (5%)
Query: 94 QSLEDVPSAAPEAMSAGVLNLTSAFVKWSPPPPQHHNGILLGYKIQVKAYNSTKILAQMS 153
S P P + TS + W ++ + Y IQ +A + ++
Sbjct: 2 SSGSSGPKP-PIDLVVTETTATSVTLTWDSG----NSEPVTYYGIQYRAAGTEGPFQEVD 56
Query: 154 LNASTTSVLLNNLTSGAVYTARVVAYTRAGLGPYSAPVTLVMDPHAPP 201
+TT + L+ + Y RV+A G GP S V + P
Sbjct: 57 -GVATTRYSIGGLSPFSEYAFRVLAVNSIGRGPPSEAVRARTGEQSGP 103
>1ujt_A KIAA1568 protein; fibronectin type III domain, structural genomics,
riken structural genomics/proteomics initiative, RSGI,
unknown function; NMR {Homo sapiens} SCOP: b.1.2.1
Length = 120
Score = 59.5 bits (144), Expect = 2e-11
Identities = 19/95 (20%), Positives = 33/95 (34%), Gaps = 7/95 (7%)
Query: 111 VLNLTSAFVKWSPPPPQHHNGILLGYKIQVKAYNS----TKILAQMSLNASTTSVLLNNL 166
VL T+ V W+ + GY++ + + + + + S +L NL
Sbjct: 26 VLTPTTVQVTWTVDRQ---PQFIQGYRVMYRQTSGLQATSSWQNLDAKVPTERSAVLVNL 82
Query: 167 TSGAVYTARVVAYTRAGLGPYSAPVTLVMDPHAPP 201
G Y +V Y G S T+ + P
Sbjct: 83 KKGVTYEIKVRPYFNEFQGMDSESKTVRTTEESGP 117
>1n26_A IL-6 receptor alpha chain; transmembrane, glycoprotein,
immunoglobulin domain, cytokine; HET: NAG BMA MAN NDG;
2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.2.1 b.1.2.1 PDB:
1p9m_C 2arw_A
Length = 325
Score = 63.0 bits (152), Expect = 2e-11
Identities = 20/138 (14%), Positives = 50/138 (36%), Gaps = 4/138 (2%)
Query: 77 IEVVVGVIRQPSNSMLVQSLEDVPSAAPEAMSAGVLNLTSAF--VKWSPPPPQHHNGILL 134
+ V V + S + Q + P ++ + + V W P + + L
Sbjct: 173 MCVASSVGSKFSKTQTFQGCGILQPDPPANITVTAVARNPRWLSVTWQDPHSWNSSFYRL 232
Query: 135 GYKIQVKAYNSTKILAQMSLNASTTSVLLNNLTSGAVYTARVVAYTRAGLGPYSAP-VTL 193
++++ +A S M + ++++ SG + ++ A G G +S
Sbjct: 233 RFELRYRAERSKTFTTWMVKD-LQHHCVIHDAWSGLRHVVQLRAQEEFGQGEWSEWSPEA 291
Query: 194 VMDPHAPPHALPSDILIT 211
+ P + P++ ++
Sbjct: 292 MGTPWTESRSPPAENEVS 309
>3teu_A Fibcon; FN3 domain, fibronectin TPYE III domain, consensus design,
S de novo protein; HET: DIO; 1.00A {Synthetic}
Length = 98
Score = 58.2 bits (141), Expect = 3e-11
Identities = 26/100 (26%), Positives = 38/100 (38%), Gaps = 6/100 (6%)
Query: 103 APEAMSAGVLNLTSAFVKWSPPPPQHHNGILLGYKIQVKAYNSTKILAQMSLNASTTSVL 162
AP + + TS V W+PP + + GY+I N ++++ S+TSV
Sbjct: 4 APTDLQVTNVTDTSITVSWTPP-----SATITGYRITYTPSNGPGEPKELTVPPSSTSVT 58
Query: 163 LNNLTSGAVYTARVVAYTRAGLGPYSAPVTLVMDPHAPPH 202
+ LT G Y V A P T H H
Sbjct: 59 ITGLTPGVEYVVSVYALKDNQESP-PLVGTQTTGGHHHHH 97
>1x3d_A Fibronectin type-III domain containing protein 3A; structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
b.1.2.1
Length = 118
Score = 58.6 bits (142), Expect = 4e-11
Identities = 16/117 (13%), Positives = 32/117 (27%), Gaps = 4/117 (3%)
Query: 87 PSNSMLVQSLEDVPSAAPEAMSAGVLNLTSAFVKWSPPPPQHHNGILLGYKIQVKAYNST 146
S + + +L P P S ++W P + + + ++
Sbjct: 5 SSGAEIFTTLSCEPDI-PNPPRIANRTKNSLTLQWKAPS--DNGSKIQNFVLEWDEGKGN 61
Query: 147 KILAQMSLNASTTSVLLNNLTSGAVYTARVVAYTRAGLGPYSAPVTLVMDPHAPPHA 203
Q S + L+ R+ A G +S V + P +
Sbjct: 62 GEFCQCY-MGSQKQFKITKLSPAMGCKFRLSARNDYGTSGFSEEVLYYTSGCSGPSS 117
>1x4z_A Biregional cell adhesion molecule-related/DOWN- regulated oncogenes
(CDON)binding...; fibronectin type III, FN3; NMR {Mus
musculus} SCOP: b.1.2.1
Length = 121
Score = 58.1 bits (141), Expect = 5e-11
Identities = 28/117 (23%), Positives = 42/117 (35%), Gaps = 5/117 (4%)
Query: 87 PSNSMLVQSLEDVPSAAPEAMSAGVLNLTSAFVKWSPPPPQHHNGILLGYKIQVKAYNST 146
S S P A P+ + + TS +V W P + ++++ K
Sbjct: 5 SSGSQPDHGRLSPPEA-PDRPTISTASETSVYVTWIPRGN--GGFPIQSFRVEYKKLKKV 61
Query: 147 K--ILAQMSLNASTTSVLLNNLTSGAVYTARVVAYTRAGLGPYSAPVTLVMDPHAPP 201
ILA ++ S SV + L G Y RV A G SAP + + P
Sbjct: 62 GDWILATSAIPPSRLSVEITGLEKGISYKFRVRALNMLGESEPSAPSRPYVVSGSGP 118
>1x5x_A Fibronectin type-III domain containing protein 3A; structural
genomics, KIAA0970, NPPSFA; NMR {Homo sapiens} SCOP:
b.1.2.1
Length = 109
Score = 57.7 bits (140), Expect = 5e-11
Identities = 23/109 (21%), Positives = 40/109 (36%), Gaps = 7/109 (6%)
Query: 95 SLEDVPSA--APEAMSAGVLNLTSAFVKWSPPPPQHHNGILLGYKIQVKAYNSTKILAQM 152
S PS +P AG+ T ++WS P + + Y ++++ S +
Sbjct: 3 SGSSGPSMPASPVLTKAGI---TWLSLQWSKPSGTPSDEGI-SYILEMEEETSGY-GFKP 57
Query: 153 SLNASTTSVLLNNLTSGAVYTARVVAYTRAGLGPYSAPVTLVMDPHAPP 201
+ + + NL Y +V+AY G S V P + P
Sbjct: 58 KYDGEDLAYTVKNLRRSTKYKFKVIAYNSEGKSNPSEVVEFTTCPDSGP 106
>2cuh_A Tenascin-X; fibronectin type III domain, extracellular matrix,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
b.1.2.1
Length = 115
Score = 57.8 bits (140), Expect = 6e-11
Identities = 25/106 (23%), Positives = 35/106 (33%), Gaps = 8/106 (7%)
Query: 103 APEAMSAGVLNLTSAFVKWSPPPPQHHNGILLGYKIQVKAYNSTKILAQMSLNASTTSVL 162
P + A L A + W PP + Y IQV A + + Q S
Sbjct: 10 GPTQLRALNLTEGFAVLHWKPPQ-----NPVDTYDIQVTAPGAPPL--QAETPGSAVDYP 62
Query: 163 LNNLTSGAVYTARVVAYTRAGLGPYSAPVTLVMDPHAPPHALPSDI 208
L++L YTA V L A +T AP ++
Sbjct: 63 LHDLVLHTNYTATVRGLRGPNLTS-PASITFTTGLEAPRDLEAKEV 107
>1wk0_A KIAA0970 protein; fibronectin type III domain, structural genomics,
riken structural genomics/proteomics initiative, RSGI,
unknown function; NMR {Homo sapiens} SCOP: b.1.2.1
Length = 137
Score = 58.5 bits (141), Expect = 6e-11
Identities = 22/121 (18%), Positives = 39/121 (32%), Gaps = 9/121 (7%)
Query: 87 PSNSMLVQSLEDVPSAAPEAMSAGVLNLTSAFVKWSPPPPQHHNGI-------LLGYKIQ 139
S ++ E + S A + + + WSPP + L GY++
Sbjct: 5 SSGDEETKAFEALLSN-IVKPVASDIQARTVVLTWSPPSSLINGETDESSVPELYGYEVL 63
Query: 140 VKAYNSTKILAQMSLNASTTSVLLNNLTSGAVYTARVVAYTRAGLGPYSAPVTLVMDPHA 199
+ + + T++ LN+L Y A+V A + G S
Sbjct: 64 ISSTGKDGKYKSVY-VGEETNITLNDLKPAMDYHAKVQAEYNSIKGTPSEAEIFTTLSCE 122
Query: 200 P 200
P
Sbjct: 123 P 123
>3e0g_A Leukemia inhibitory factor receptor; IG domain, cytokine binding
homology region (CHR), cell MEMB disease mutation,
glycoprotein, membrane; HET: NAG MAN FUC; 3.10A {Homo
sapiens}
Length = 483
Score = 61.4 bits (148), Expect = 7e-11
Identities = 22/119 (18%), Positives = 43/119 (36%), Gaps = 7/119 (5%)
Query: 79 VVVGVIRQPSNSMLVQSLEDVPSAAPEAMSAGVLNLTSAFVKWSPPPPQHHNGILLGYKI 138
+ + +++LV E V P + +N T+ + W P +I
Sbjct: 360 NAHNPLGRSQSTILVNITEKVYPHTPTSFKVKDINSTAVKLSWHLPGNFAKIN--FLCEI 417
Query: 139 QVKAYNSTKILAQMSLN---ASTTSVLLNNLTSGAVYTARVVAYTRAGL--GPYSAPVT 192
++K NS + +++ S+ V L+ L +YT R+ T +S
Sbjct: 418 EIKKSNSVQEQRNVTIQGVENSSYLVALDKLNPYTLYTFRIRCSTETFWKWSKWSNKKQ 476
Score = 52.5 bits (125), Expect = 7e-08
Identities = 17/128 (13%), Positives = 38/128 (29%), Gaps = 5/128 (3%)
Query: 88 SNSMLVQSLEDVPSAAPEAMSAGVLNLTSAFVKWSPPPPQHHNG-ILLGYKIQVK-AYNS 145
N P P+ ++ +L W+P G Y + +
Sbjct: 269 DNIFGTVIFAGYPPDTPQQLNCETHDLKEIICSWNPGRVTALVGPRATSYTLVESFSGKY 328
Query: 146 TKILAQMSLNASTTSVLLNNLTSGAVYTARVVAYTRAGLGPYSAPVTLVMDPHAPPHALP 205
++ + + +L L + +Y + A+ G + V + PH P
Sbjct: 329 VRLKRAEAPTNESYQLLFQMLPNQEIYNFTLNAHNPLGRSQSTILVNI--TEKVYPHT-P 385
Query: 206 SDILITHL 213
+ + +
Sbjct: 386 TSFKVKDI 393
Score = 39.4 bits (91), Expect = 0.001
Identities = 21/180 (11%), Positives = 61/180 (33%), Gaps = 20/180 (11%)
Query: 51 YEDNRSCSGMRMGEINTKM-----GEVNTRIIEVVVGVIRQPSNSMLVQSLEDVPSAAPE 105
+ RS S ++ + + K+ G+ I + ++ Q++ +P
Sbjct: 31 CIEQRSRSCYQLEKTSIKIPALSHGDYEITINSLHDFGSSTSKFTLNEQNVSLIPDTPEI 90
Query: 106 AMSAGVLNLTSAFVKWSPPPPQHHNGILLGYKIQVKAYNSTKILAQMSLN---ASTTSVL 162
+ + ++ ++KW+ + + ++I+V S +++ ++ ++
Sbjct: 91 LQLSADFSTSTLYLKWNDRGSVFPHRSNVIWEIKVLRKESMELVKLVTHQTTLNGKDTLH 150
Query: 163 LNNLTS-----GAVYTARVVAYTRAGLGP-------YSAPVTLVMDPHAPPHALPSDILI 210
+ S A++ + Y +S + P + P D +I
Sbjct: 151 HWSWASDMPLECAIHFVEIRCYIDNLHFSGLEEWSDWSPVKQISWIPDSQTKVFPQDKVI 210
>1x5y_A Myosin binding protein C, fast-type; fast MYBP-C, fibronectin type
III domain containing protein, cytoskeleton, muscle
contraction; NMR {Mus musculus} SCOP: b.1.2.1
Length = 111
Score = 57.4 bits (139), Expect = 7e-11
Identities = 22/107 (20%), Positives = 38/107 (35%), Gaps = 4/107 (3%)
Query: 97 EDVPSAAPEAMSAGVLNLTSAFVKWSPPPPQHHNGILLGYKIQVKAYNSTKILAQMSLNA 156
SA P+ ++ + T+ +KW PP GI GY ++ S + +
Sbjct: 6 SGPTSA-PQHLTVEDVTDTTTTLKWRPPDRIGAGGID-GYLVEYCLEGSEEWVPANKEPV 63
Query: 157 STTSVLLNNLTSGAVYTARVVAYTRAGLGPYSAPVTLVM--DPHAPP 201
+ +L +GA RVV AG + + V +
Sbjct: 64 ERCGFTVKDLPTGARILFRVVGVNIAGRSEPATLLQPVTIRESGPSS 110
>2cum_A Tenascin-X; hexabrachion-like, fibronectin type III domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
b.1.2.1
Length = 105
Score = 56.7 bits (137), Expect = 1e-10
Identities = 22/105 (20%), Positives = 33/105 (31%), Gaps = 10/105 (9%)
Query: 103 APEAMSAGVLNLTSAFVKWSPPPPQHHNGILLGYKIQVKAYNSTKILAQMSLNASTTSVL 162
AP + A + +A + W+ PP GY + ++ L TS
Sbjct: 10 APRDLEAKEVTPRTALLTWTEPP-----VRPAGYLLSFHTPGGQ--TQEILLPGGITSHQ 62
Query: 163 LNNLTSGAVYTARVVAYTRAGLGPYSAPVTLVMDPHAPPHALPSD 207
L L Y AR+ A PV+ + PS
Sbjct: 63 LLGLFPSTSYNARLQAMWGQS---LLPPVSTSFTTGGLRISGPSS 104
>1v5j_A KIAA1355 protein, RSGI RUH-008; FN3 domain, human cDNA, structural
genomics, riken structural genomics/proteomics
initiative, cell adhesion; NMR {Homo sapiens} SCOP:
b.1.2.1
Length = 108
Score = 56.5 bits (136), Expect = 1e-10
Identities = 18/109 (16%), Positives = 40/109 (36%), Gaps = 3/109 (2%)
Query: 95 SLEDVPSAAPEAMSAGVLNLTSAFVKWSPPPPQHHNGILLGYKIQVKAYNSTKILAQMSL 154
S + P + A + W PP + L GY ++ + + + ++
Sbjct: 2 SSGSSGLSPPRGLVAVRTP-RGVLLHWDPP--ELVPKRLDGYVLEGRQGSQGWEVLDPAV 58
Query: 155 NASTTSVLLNNLTSGAVYTARVVAYTRAGLGPYSAPVTLVMDPHAPPHA 203
+ T +L+ L +Y R+VA+ + + S + + P +
Sbjct: 59 AGTETELLVPGLIKDVLYEFRLVAFAGSFVSDPSNTANVSTSGLSGPSS 107
>2ocf_D Fibronectin; estrogen receptor, LBD, monobody, estradiol,
hormone-growth complex; HET: CME EST; 2.95A {Homo
sapiens}
Length = 121
Score = 56.1 bits (135), Expect = 3e-10
Identities = 19/99 (19%), Positives = 34/99 (34%), Gaps = 6/99 (6%)
Query: 95 SLEDVPSAAPEAMSAGVLNLTSAFVKWSPPPPQHHNGILLGYKIQVKAYNSTKILAQMSL 154
+ S P + TS + W P + Y+I + + ++
Sbjct: 23 YFQGSVSDVPTKLEVVAATPTSLLISWDAPA-----VTVRYYRITYGETGGNSPVQEFTV 77
Query: 155 NASTTSVLLNNLTSGAVYTARVVAYTRAGLG-PYSAPVT 192
S ++ ++ L G YT V A T L S P++
Sbjct: 78 PGSKSTATISGLKPGVDYTITVYAVTGLRLMLAGSKPIS 116
>2yuw_A Myosin binding protein C, SLOW type; fibronectin III domain, SLOW-
type protein, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 110
Score = 55.4 bits (134), Expect = 4e-10
Identities = 16/104 (15%), Positives = 34/104 (32%), Gaps = 3/104 (2%)
Query: 100 PSAAPEAMSAGVLNLTSAFVKWSPPPPQHHNGILLGYKIQVKAYNSTKILAQMSLNASTT 159
++ P ++ + T+ ++W PP G+ GY ++ + + T
Sbjct: 7 GTSPPTLLTVDSVTDTTVTMRWRPPDHIGAAGLD-GYVLEYCFEGTEDWIVANKDLIDKT 65
Query: 160 SVLLNNLTSGAVYTARVVAYTRAGLGPYSAPVTLVM--DPHAPP 201
+ L + A RV A AG ++ +
Sbjct: 66 KFTITGLPTDAKIFVRVKAVNAAGASEPKYYSQPILVKESGPSS 109
>1tdq_A Tenascin-R; extracellular matrix, lecticans, tenascins,
protein-protein interactions, C-type lectin domain;
2.60A {Rattus norvegicus} SCOP: b.1.2.1 b.1.2.1 b.1.2.1
Length = 283
Score = 58.7 bits (142), Expect = 4e-10
Identities = 16/89 (17%), Positives = 32/89 (35%), Gaps = 7/89 (7%)
Query: 100 PSAAPEAMSAGVLNLTSAFVKWSPPPPQHHNGILLGYKIQVKAYNSTKILAQMSLNASTT 159
+P + + TS + W+ +G + Y+I + +++++ T
Sbjct: 196 ELDSPRDLMVTASSETSISLIWTKA-----SGPIDHYRITFTPSSGIS--SEVTVPRDRT 248
Query: 160 SVLLNNLTSGAVYTARVVAYTRAGLGPYS 188
S L +L GA Y + A S
Sbjct: 249 SYTLTDLEPGAEYIISITAERGRQQSLES 277
Score = 58.3 bits (141), Expect = 5e-10
Identities = 21/126 (16%), Positives = 38/126 (30%), Gaps = 8/126 (6%)
Query: 78 EVVVGVIRQPSNSMLVQSLEDVPSAAPEAMSAGVLNLTSAFVKWSPPPPQHHNGILLGYK 137
EV + +R + S + AP+ + G TS ++W YK
Sbjct: 82 EVSISAVRGTNESDASSTQFTTEIDAPKNLRVGSRTATSLDLEWDNSE-----AEAQEYK 136
Query: 138 IQVKAYNSTKI--LAQMSLNASTTSVLLNNLTSGAVYTARVVAYTRAGLGPYSAPVTLVM 195
+ + + TT L +L G Y + A + A +
Sbjct: 137 VVYSTLAGEQYHEVLVPKGIGPTTKTTLTDLVPGTEYGVGISAVMNSKQSI-PATMNART 195
Query: 196 DPHAPP 201
+ +P
Sbjct: 196 ELDSPR 201
Score = 57.9 bits (140), Expect = 7e-10
Identities = 17/104 (16%), Positives = 32/104 (30%), Gaps = 7/104 (6%)
Query: 99 VPSAAPEAMSAGVLNLTSAFVKWSPPPPQHHNGILLGYKIQVKAYNSTKILAQMSLNAST 158
V P + ++ T AFV+W+PP + ++ L
Sbjct: 14 VIDG-PTQILVRDVSDTVAFVEWTPPR-----AKVDFILLKYGLVGGEGGKTTFRLQPPL 67
Query: 159 TSVLLNNLTSGAVYTARVVAYTRAGLGPYSAPVTLVMDPHAPPH 202
+ + L G+ Y + A S+ + AP +
Sbjct: 68 SQYSVQALRPGSRYEVSISAVRGTNESDASSTQFTT-EIDAPKN 110
>1j8k_A Fibronectin; EDA, TYPEIII domain, protein binding; NMR {Homo
sapiens} SCOP: b.1.2.1
Length = 94
Score = 53.6 bits (129), Expect = 1e-09
Identities = 16/95 (16%), Positives = 34/95 (35%), Gaps = 10/95 (10%)
Query: 98 DVPSAAPEAMSAGVLNLTSAFVKWSPPPPQHHNGILLGYKIQVKAYNSTKILAQMSLNAS 157
++ P+ ++ +++ S + W P G + Y++ + + +
Sbjct: 1 NID--RPKGLAFTDVDVDSIKIAWESP-----QGQVSRYRVTYSSPEDGIHELFPAPDGE 53
Query: 158 TTSVLLNNLTSGAVYTARVVAYTRAGLGPYSAPVT 192
+ L L G+ YT VVA S P+
Sbjct: 54 EDTAELQGLRPGSEYTVSVVALHDDM---ESQPLI 85
>2kbg_A N-CAM 2, neural cell adhesion molecule 2; fibronectin type III
module, beta-sheet sandwich, cell membrane,
glycoprotein, immunoglobulin domain; NMR {Homo sapiens}
Length = 114
Score = 54.1 bits (130), Expect = 1e-09
Identities = 10/90 (11%), Positives = 27/90 (30%), Gaps = 4/90 (4%)
Query: 115 TSAFVKWSPPPPQHHNGILLGYKIQVKAYNSTKILAQMSLNASTTSVLLNNLTSGAVYTA 174
S + + +L Y ++ ++ + + + + ++L +L Y
Sbjct: 22 KSFKLSITKQDD--GGAPILEYIVKYRSKDKEDQWLEKKVQGNKDHIILEHLQWTMGYEV 79
Query: 175 RVVAYTRAGLGPYSAPV--TLVMDPHAPPH 202
++ A R G + H
Sbjct: 80 QITAANRLGYSEPTVYEFSMPPKPNIIKDH 109
>2ha1_A Fibronectin; beta sandwich, protein-protein complex, rigid BODY
docking, cell adhesion, structural protein; NMR {Homo
sapiens}
Length = 201
Score = 55.8 bits (134), Expect = 2e-09
Identities = 14/107 (13%), Positives = 34/107 (31%), Gaps = 6/107 (5%)
Query: 102 AAPEAMSAGVLNLT--SAFVKWSPPPPQHHNGILLGYKIQVKAYNSTKILAQMSLNASTT 159
+ P + S ++W+ P + Y ++ + NS + ++
Sbjct: 1 SGPVEVFITETPSQPNSHPIQWNAPQ----PSHISKYILRWRPKNSVGRWKEATIPGHLN 56
Query: 160 SVLLNNLTSGAVYTARVVAYTRAGLGPYSAPVTLVMDPHAPPHALPS 206
S + L G VY ++++ + G + P +
Sbjct: 57 SYTIKGLKPGVVYEGQLISIQQYGHQEVTRFDFTTTSTSTPVTSNTV 103
Score = 53.1 bits (127), Expect = 1e-08
Identities = 14/93 (15%), Positives = 30/93 (32%), Gaps = 5/93 (5%)
Query: 100 PSAAPEAMSAGVLNLTSAFVKWSPPPPQHHNGILLGYKIQVKAYNSTKILAQMSLNASTT 159
+ S + +S V W + G++++ + + L ++ T
Sbjct: 111 SPLVATSESVTEITASSFVVSWVSAS-----DTVSGFRVEYELSEEGDEPQYLDLPSTAT 165
Query: 160 SVLLNNLTSGAVYTARVVAYTRAGLGPYSAPVT 192
SV + +L G Y V + G +
Sbjct: 166 SVNIPDLLPGRKYIVNVYQISEDGEQSLILSTS 198
>3tes_A Tencon; fibronectin type III domain, FN3, consensus design, de
novo; 2.50A {Synthetic}
Length = 98
Score = 53.2 bits (128), Expect = 2e-09
Identities = 18/103 (17%), Positives = 32/103 (31%), Gaps = 11/103 (10%)
Query: 103 APEAMSAGVLNLTSAFVKWSPPPPQHHNGILLGYKIQVKAYNSTKILAQMSLNASTTSVL 162
AP+ + + S + W+ P + + IQ + +++ S S
Sbjct: 4 APKNLVVSEVTEDSLRLSWTAP-----DAAFDSFMIQYQESEKVGEAINLTVPGSERSYD 58
Query: 163 LNNLTSGAVYTARVVAYTRAGLGPYSAPVTLV---MDPHAPPH 202
L L G YT + S P++ H H
Sbjct: 59 LTGLKPGTEYTVSIYGVKGGH---RSNPLSAEFTTGGHHHHHH 98
>1qr4_A Protein (tenascin); fibronectin type-III, heparin, extracellular
matrix, adhesion, fusion protein, structural protein;
2.55A {Gallus gallus} SCOP: b.1.2.1 b.1.2.1
Length = 186
Score = 55.1 bits (133), Expect = 2e-09
Identities = 19/120 (15%), Positives = 39/120 (32%), Gaps = 7/120 (5%)
Query: 78 EVVVGVIRQPSNSMLVQSLEDVPSAAPEAMSAGVLNLTSAFVKWSPPPPQHHNGILLGYK 137
+ + + S +P+ +S + SA V W+PP + Y+
Sbjct: 72 TISLVAEKGRHKSKPTTIKGSTVVGSPKGISFSDITENSATVSWTPPR-----SRVDSYR 126
Query: 138 IQVKAYNSTKILAQMSLNASTTSVLLNNLTSGAVYTARVVAYTRAGLG-PYSAPVTLVMD 196
+ ++++ S T L L G Y +++ P S + +D
Sbjct: 127 VSYVPITGGTP-NVVTVDGSKTRTKLVKLVPGVDYNVNIISVKGFEESEPISGILKTALD 185
Score = 54.4 bits (131), Expect = 4e-09
Identities = 17/100 (17%), Positives = 35/100 (35%), Gaps = 8/100 (8%)
Query: 103 APEAMSAGVLNLTSAFVKWSPPPPQHHNGILLGYKIQVKAYNSTKILAQMSLNASTTSVL 162
P+ + T+ ++W P Y++ + + K +M + +TS +
Sbjct: 9 NPKDLEVSDPTETTLSLRWRRPV-----AKFDRYRLTYVSPSGKK--NEMEIPVDSTSFI 61
Query: 163 LNNLTSGAVYTARVVAYTRAGLGPYSAPVTLVMDPHAPPH 202
L L +G YT +VA + + +P
Sbjct: 62 LRGLDAGTEYTISLVAEKGRHKSKPTT-IKGSTVVGSPKG 100
>1wfu_A Unnamed protein product; FN3 domain, similar to 1700007B22RIK
protein, structural genomics, riken structural
genomics/proteomics initiative, RSGI; NMR {Mus musculus}
SCOP: b.1.2.1
Length = 120
Score = 53.8 bits (129), Expect = 2e-09
Identities = 20/117 (17%), Positives = 40/117 (34%), Gaps = 5/117 (4%)
Query: 88 SNSMLVQSLEDVPSAAPEAMSAGVLNLTSAFVKWSPPPPQHHNGIL---LGYKIQVKAYN 144
S S ++ + VP + P G + S + W + G L + I+ +
Sbjct: 3 SGSSGMEPHKVVPLSKPHPPVVGKVTHHSIELYWDLEQKEKRQGPQEQWLRFSIEEEDPK 62
Query: 145 STKILAQMSLNASTTSVLLNNLTSGAVYTARVVAYTRAGLGPYSAPVTLVMDPHAPP 201
+ T ++ L +Y R+ + +G YS V++ + P
Sbjct: 63 MHSY--GVIYTGYATRHVVEGLEPRTLYKFRLKVTSPSGEYEYSPVVSVATTRESGP 117
>3qwq_B Adnectin; cell surface receptor, tyrosine kinase, glycoprotein,
adnect antitumor, drug, engineered binding protein; HET:
NAG BMA MAN FUC; 2.75A {Homo sapiens} PDB: 3qwr_D*
Length = 114
Score = 53.4 bits (128), Expect = 2e-09
Identities = 16/101 (15%), Positives = 31/101 (30%), Gaps = 12/101 (11%)
Query: 99 VPSAAPEAMSAGVLNLTSAFVKWSPPPPQHHNGILLGYKIQVKAYNSTKILAQMSLNAST 158
V P + TS + W G Y+I + + ++
Sbjct: 3 VSDV-PRDLEVVAATPTSLLISWDSGR-----GSYQYYRITYGETGGNSPVQEFTVPGPV 56
Query: 159 TSVLLNNLTSGAVYTARVVAYTRAGLGP------YSAPVTL 193
+ ++ L G YT V A T + +P+++
Sbjct: 57 HTATISGLKPGVDYTITVYAVTDHKPHADGPHTYHESPISI 97
>2h41_A Fibronectin; beta sandwich, cell adhesion, structural protein; NMR
{Homo sapiens} PDB: 2h45_A
Length = 95
Score = 52.9 bits (127), Expect = 2e-09
Identities = 13/78 (16%), Positives = 27/78 (34%), Gaps = 5/78 (6%)
Query: 115 TSAFVKWSPPPPQHHNGILLGYKIQVKAYNSTKILAQMSLNASTTSVLLNNLTSGAVYTA 174
+S V W + G++++ + + L ++ TSV + +L G Y
Sbjct: 20 SSFVVSWVSASDT-----VSGFRVEYELSEEGDEPQYLDLPSTATSVNIPDLLPGRKYIV 74
Query: 175 RVVAYTRAGLGPYSAPVT 192
V + G +
Sbjct: 75 NVYQISEDGEQSLILSTS 92
>2crm_A Fibronectin type-III domain containing protein 3A; structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
b.1.2.1
Length = 120
Score = 52.8 bits (127), Expect = 4e-09
Identities = 21/115 (18%), Positives = 40/115 (34%), Gaps = 2/115 (1%)
Query: 87 PSNSMLVQSLEDVPSAAPEAMSAGVLNLTSAFVKWSPPPPQHHNGILLGYKIQVKAYNST 146
S + + D P + G ++ S + W PP + + Y +++ S
Sbjct: 5 SSGVVEFTTCPDKPGIPVKPSVKGKIHSHSFKITWDPPK-DNGGATINKYVVEMAE-GSN 62
Query: 147 KILAQMSLNASTTSVLLNNLTSGAVYTARVVAYTRAGLGPYSAPVTLVMDPHAPP 201
+M + +T L + L G Y RV + G S + + + P
Sbjct: 63 GNKWEMIYSGATREHLCDRLNPGCFYRLRVYCISDGGQSAVSESLLVQTPAVSGP 117
>3mtr_A N-CAM-1, NCAM-1, neural cell adhesion molecule 1; immunoglobulin
domain, fibronectin type III repeat, CE adhesion; 1.80A
{Homo sapiens}
Length = 215
Score = 54.8 bits (132), Expect = 4e-09
Identities = 18/86 (20%), Positives = 28/86 (32%), Gaps = 4/86 (4%)
Query: 115 TSAFVKWSPPPPQHHNGILLGYKIQVKAYNS---TKILAQMSLNASTTSVLLNNLTSGAV 171
++A V++ P +L YK + +A + V + L
Sbjct: 127 STAQVQFDEPE-ATGGVPILKYKAEWRAVGEEVWHSKWYDAKEASMEGIVTIVGLKPETT 185
Query: 172 YTARVVAYTRAGLGPYSAPVTLVMDP 197
Y R+ A GLG SA P
Sbjct: 186 YAVRLAALNGKGLGEISAASEFKTQP 211
>2nzi_A Titin; IG-domain, FNIII-domain, transferase; 2.90A {Homo sapiens}
Length = 305
Score = 55.5 bits (134), Expect = 5e-09
Identities = 23/110 (20%), Positives = 38/110 (34%), Gaps = 4/110 (3%)
Query: 98 DVPSAAPEAMSAGVLNLTSAFVKWSPPPPQHHNGILLGYKIQVKAYNSTKILAQMSLNAS 157
DVP P + ++ S + W+ P + Y ++ A + + A
Sbjct: 197 DVPDP-PRGVKVSDVSRDSVNLTWTEPAS-DGGSKITNYIVEKCATTAER--WLRVGQAR 252
Query: 158 TTSVLLNNLTSGAVYTARVVAYTRAGLGPYSAPVTLVMDPHAPPHALPSD 207
T + NL Y RV+A + GL S P + A+ D
Sbjct: 253 ETRYTVINLFGKTSYQFRVIAENKFGLSKPSEPSEPTITKEDKTRAMNYD 302
>1wis_A KIAA1514 protein; FNIII domain, sidekick-2, structural genomics,
riken structural genomics/proteomics initiative, RSGI,
unknown function; NMR {Homo sapiens} SCOP: b.1.2.1
Length = 124
Score = 52.0 bits (125), Expect = 1e-08
Identities = 16/121 (13%), Positives = 41/121 (33%), Gaps = 8/121 (6%)
Query: 86 QPSNSMLVQSLEDVPSAAPEAMSAGVLNLTSAFVKWSPPPPQHHNGILLGYKIQVKAYNS 145
S ++ ++P P + + S +++ P + + ++ +
Sbjct: 4 GSSGTISSGVPPELPGP-PTNLGISNIGPRSVTLQFRPGYD--GKTSISRWLVEAQVGVV 60
Query: 146 TK-----ILAQMSLNASTTSVLLNNLTSGAVYTARVVAYTRAGLGPYSAPVTLVMDPHAP 200
+ ++ Q+S S+ + +L Y+ R+ G P S P + +
Sbjct: 61 GEGEEWLLIHQLSNEPDARSMEVPDLNPFTCYSFRMRQVNIVGTSPPSQPSRKIQTLQSG 120
Query: 201 P 201
P
Sbjct: 121 P 121
>3n06_B PRL-R, prolactin receptor; PH dependence, hematopoietic cytokine,
hormone-hormone recep complex; 2.00A {Homo sapiens} PDB:
3mzg_B 3n0p_B 3ncb_B 1bp3_B 3d48_R 3nce_B 3ncc_B 3ncf_B
3ew3_B 3npz_B 1f6f_B 2lfg_A
Length = 210
Score = 52.8 bits (126), Expect = 2e-08
Identities = 28/164 (17%), Positives = 50/164 (30%), Gaps = 12/164 (7%)
Query: 36 KYEDGRNKYEDGRSKYEDNRSCSGMRMGEINTKMGEVNTRIIEVVVGVIRQPSNSMLVQS 95
E +E SC G+ T M ++ + S+ + V
Sbjct: 41 HREGETLMHECPDYITGGPNSC---HFGKQYTSMWRTYIMMVNATNQMGSSFSDELYVDV 97
Query: 96 LEDVPSAAPEAMSAGVLNL----TSAFVKWSPPP--PQHHNGILLGYKIQVKAYNSTKIL 149
V P ++ V ++KWSPP L Y+I++K + +
Sbjct: 98 TYIVQPDPPLELAVEVKQPEDRKPYLWIKWSPPTLIDLKTGWFTLLYEIRLKPEKAAEW- 156
Query: 150 AQMSLNASTTSVLLNNLTSGAVYTARVVAYTRAGL-GPYSAPVT 192
++ T + +L G Y +V G +S
Sbjct: 157 -EIHFAGQQTEFKILSLHPGQKYLVQVRCKPDHGYWSAWSPATF 199
Score = 30.1 bits (67), Expect = 0.77
Identities = 12/113 (10%), Positives = 28/113 (24%), Gaps = 2/113 (1%)
Query: 99 VPSAAPEAMSAGVLNLTSAFVKWSPPPPQHHNGILLGYKIQVKAYNSTKILAQMSLNAST 158
+P PE N + W P + + ++ ++
Sbjct: 2 LPPGKPEIFKCRSPNKETFTCWWRPGTDGGLPTNYSLTYHREGETLMHECPDYITGGPNS 61
Query: 159 TSVLLNNLTSGAVYTARVVAYTRAGLGPYSAPVTLVMDPHAPPHALPSDILIT 211
+ Y V A + G + + + P P ++ +
Sbjct: 62 CHFGKQYTSMWRTYIMMVNATNQMGSSFSD-ELYVDVTYIVQPDP-PLELAVE 112
>2q7n_A Leukemia inhibitory factor receptor; cytokine cell surface receptor
complex LIFR LIF, cytokine RE cytokine complex; HET: NAG
FUC MAN; 4.00A {Mus musculus}
Length = 488
Score = 54.2 bits (129), Expect = 2e-08
Identities = 23/119 (19%), Positives = 43/119 (36%), Gaps = 7/119 (5%)
Query: 79 VVVGVIRQPSNSMLVQSLEDVPSAAPEAMSAGVLNLTSAFVKWSPPPPQHHNGILLGYKI 138
+ Q +++++ E V P ++ +N T W P I L +I
Sbjct: 365 TGRNPLGQAQSAVVINVTERVAPHDPTSLKVKDINSTVVTFSWYLPGNF--TKINLLCQI 422
Query: 139 QVKAYNSTKILAQMSLN---ASTTSVLLNNLTSGAVYTARVVAYTRAGL--GPYSAPVT 192
++ NS K + ++ ST V ++ L YT RV ++ +S
Sbjct: 423 EICKANSKKEVRNATIRGAEDSTYHVAVDKLNPYTAYTFRVRCSSKTFWKWSRWSDEKR 481
Score = 40.7 bits (94), Expect = 4e-04
Identities = 27/176 (15%), Positives = 63/176 (35%), Gaps = 19/176 (10%)
Query: 53 DNRSCSGMRMGEINTKMGEVNTRIIEVVVGVIRQPSNSMLV--QSLEDVPSAAPEAMSAG 110
+R S + N K+ ++ EV + + + + + + +P PE +
Sbjct: 41 KDRFHSCHPLETTNVKIPALSPGDHEVTINYLNGFQSKFTLNEKDVSLIPET-PEILDLS 99
Query: 111 VLNLTSA-FVKWSPPPPQHHNGILLGYKIQVKAYNSTKILAQMSLNASTT---SVLLNNL 166
TS+ +KW+ + ++I+V T+ +A + LN + +V N
Sbjct: 100 ADFFTSSLLLKWNDRGSALPHPSNATWEIKVLQNPRTEPVALVLLNTMLSGKDTVQHWNW 159
Query: 167 TS-----GAVYTARVVAYTRAGLGP-------YSAPVTLVMDPHAPPHALPSDILI 210
TS A ++ + + + +S + + + P D ++
Sbjct: 160 TSDLPLQCATHSVSIRWHIDSPHFSGYKEWSDWSPLKNISWIRNTETNVFPQDKVV 215
Score = 34.2 bits (77), Expect = 0.051
Identities = 15/111 (13%), Positives = 30/111 (27%), Gaps = 9/111 (8%)
Query: 100 PSAAPEAMSAGVLNLTSAFVKWSPPPPQHHNGIL-----LGYKIQVKAYNSTKILAQMSL 154
P P+ +S +L W+P G L I K+ + L
Sbjct: 286 PPDVPQKLSCETHDLKEIICSWNPGRITGLVGPRNTEYTLFESISGKSAVFHR---IEGL 342
Query: 155 NASTTSVLLNNLTSGAVYTARVVAYTRAGLGPYSAPVTLVMD-PHAPPHAL 204
T + + ++ + G + + + P +L
Sbjct: 343 TNETYRLGVQMHPGQEIHNFTLTGRNPLGQAQSAVVINVTERVAPHDPTSL 393
>2d9q_B Granulocyte colony-stimulating factor receptor; cytokine,
ligand-receptor complex, signaling protein-cytokin; HET:
NAG; 2.80A {Homo sapiens} SCOP: b.1.1.3 b.1.2.1 b.1.2.1
Length = 313
Score = 53.8 bits (128), Expect = 2e-08
Identities = 17/135 (12%), Positives = 33/135 (24%), Gaps = 12/135 (8%)
Query: 77 IEVVVGVIRQPSNSMLVQSLEDVPSAAPEAMSAGVLN------LTSAFVKWSPPPPQHHN 130
++ + S + + ++ V P + + W P P H
Sbjct: 179 VQAENALGTSMSPQLCLDPMDVVKLEPPMLRTMDPSPEAAPPQAGCLQLSWEPWQPGLHI 238
Query: 131 GILLGYKIQVKA-YNSTKILAQMSLNASTTSVLLNNLTSGAVYTARVVAYTRAGLG---P 186
+++ K L L L YT ++ G
Sbjct: 239 N--QKCELRHKPQRGEASWALVGPLPLEALQYELCGLLPATAYTLQIRCIRWPLPGHWSD 296
Query: 187 YSAPVTLVMDPHAPP 201
+S + L A
Sbjct: 297 WSPSLELRTTERAAA 311
>1uey_A KIAA0343 protein; immunoglobulin-like beta-sandwich fold, NG-CAM
related cell adhesion molecule, fibronectin type III
domain, structural genomics; NMR {Homo sapiens} SCOP:
b.1.2.1
Length = 127
Score = 50.4 bits (121), Expect = 3e-08
Identities = 22/112 (19%), Positives = 38/112 (33%), Gaps = 4/112 (3%)
Query: 98 DVPSAAPEAMSAGVLNLTSAFVKWSPPPPQHHNGILLGYKIQVKAYNSTKILAQMSLNAS 157
DVP+ P + S + W+P +N + + I+ + L S
Sbjct: 15 DVPNP-PFDLELTDQLDKSVQLSWTPGDD--NNSPITKFIIEYEDAMHKPGLWHHQTEVS 71
Query: 158 -TTSVLLNNLTSGAVYTARVVAYTRAGLGPYSAPVTLVMDPHAPPHALPSDI 208
T + NL+ Y+ RV+A G S + + P P+
Sbjct: 72 GTQTTAQLNLSPYVNYSFRVMAVNSIGKSLPSEASEQYLTKASEPDKNPTSG 123
>3lb6_C IL-13, interleukin-13 receptor subunit alpha-2; cytokine, decoy,
decoy receptor, glycoprotein; HET: MLY NAG; 3.05A {Homo
sapiens} PDB: 3lb6_D*
Length = 380
Score = 52.5 bits (125), Expect = 6e-08
Identities = 15/136 (11%), Positives = 38/136 (27%), Gaps = 11/136 (8%)
Query: 87 PSNSMLVQSLEDVPSAAPEAMSAGVLNLTSAFVKWSPPPPQHHNGILLGYKIQVKAYNST 146
S+ Q V P ++ + +KWS P Y+I+++ ++T
Sbjct: 224 RSSYFTFQLQNIVKPLPPVYLTFTRESSCEIKLKWSIPLGPIPARC-FDYEIEIREDDTT 282
Query: 147 KILAQMSLNASTTSVLLNNLTSGAVYTARVVAYTRAGLG------PYSAPVTLVMDPHAP 200
+ + + L V + +S + +
Sbjct: 283 LV----TATVENETYTLKTTNETRQLCFVVRSKVNIYCSDDGIWSEWSDKQCWEGEDLSK 338
Query: 201 PHALPSDILITHLVLI 216
L + ++++
Sbjct: 339 KTLLRFWLPFGFILIL 354
Score = 42.5 bits (99), Expect = 1e-04
Identities = 13/128 (10%), Positives = 32/128 (25%), Gaps = 8/128 (6%)
Query: 87 PSNSMLVQSLEDVPSAAPEAMSAGVLNLTSAF-VKWSPPPPQ-HHNGILLGYKIQVKAYN 144
+ S ++ P+ ++W PP H + Y+++ +
Sbjct: 18 TTFGCTSSSDTEIKVNPPQDFEIVDPGYLGYLYLQWQPPLSLDHFKECTVEYELKYRNIG 77
Query: 145 STKILAQMSLNASTTSVLLNNLTSGAVYTARVVAYTRA--GLGPYSAPVTLVMDPHAPPH 202
S + + + +L G + + G S+
Sbjct: 78 SET--WKTIITKNLHYKDGFDLNKGIEAXIHTLLPWQCTNGSEVQSSWAETTYWISPQGI 135
Query: 203 --ALPSDI 208
D+
Sbjct: 136 PETXVQDM 143
>2dkm_A Collagen alpha-1(XX) chain; FN3 domain, KIAA1510, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 104
Score = 48.7 bits (116), Expect = 9e-08
Identities = 14/104 (13%), Positives = 26/104 (25%), Gaps = 7/104 (6%)
Query: 95 SLEDVPSAAPEAMSAGVLNLTSAFVKWSPPPPQHHNGILLGYKIQVKAYNSTKILAQMSL 154
S P P A++ + + + W P Y ++ + + +
Sbjct: 3 SGSSGPLPPPRALTLAAVTPRTVHLTWQPSAG------ATHYLVRCSPASPKGEEEEREV 56
Query: 155 NASTTSVLLNNLTSGAVYTARVVAYTRAGLG-PYSAPVTLVMDP 197
VLL+ L G Y V +
Sbjct: 57 QVGRPEVLLDGLEPGRDYEVSVQSLRGPEGSEARGIRARTPTSG 100
>2b5i_B Interleukin-2 receptor beta chain; four-helix bundle, fibronectin
domain, cytokine-cytokine REC complex; HET: NAG; 2.30A
{Homo sapiens} SCOP: b.1.2.1 b.1.2.1 PDB: 3qaz_B*
2erj_B*
Length = 214
Score = 50.6 bits (120), Expect = 1e-07
Identities = 22/128 (17%), Positives = 41/128 (32%), Gaps = 5/128 (3%)
Query: 78 EVVVGVIRQPSNSMLVQSLEDVPSAAPEAMSAGVLNLTSAFVKWSPPPPQHHNGILLGYK 137
GV + + E++ AP ++ + + W H+ L ++
Sbjct: 83 LCREGVRWRVMAIQDFKPFENLRLMAPISLQVVHVETHRCNISWEISQASHYFERHLEFE 142
Query: 138 IQVKAYNSTKILAQM-SLNASTTSVLLNNLTSGAVYTARVVAYTRAGLG----PYSAPVT 192
+ + T A + +L + L LT Y +V G P+S P+
Sbjct: 143 ARTLSPGHTWEEAPLLTLKQKQEWICLETLTPDTQYEFQVRVKPLQGEFTTWSPWSQPLA 202
Query: 193 LVMDPHAP 200
P A
Sbjct: 203 FRTKPAAL 210
>1uem_A KIAA1568 protein; immunoglobulin-like beta-sandwich fold,
fibronectin type III, structural genomics; NMR {Homo
sapiens} SCOP: b.1.2.1
Length = 117
Score = 48.5 bits (116), Expect = 1e-07
Identities = 20/104 (19%), Positives = 33/104 (31%), Gaps = 3/104 (2%)
Query: 98 DVPSAAPEAMSAGVLNLTSAFVKWSPPPPQHHNGILLGYKIQVKAYNSTKILAQMSLNAS 157
D+P P + S + W P P Y I+ + + + ++ +
Sbjct: 14 DLPGP-PSKPQVTDVTKNSVTLSWQPGTP--GTLPASAYIIEAFSQSVSNSWQTVANHVK 70
Query: 158 TTSVLLNNLTSGAVYTARVVAYTRAGLGPYSAPVTLVMDPHAPP 201
TT + L +Y V A GL S V + P
Sbjct: 71 TTLYTVRGLRPNTIYLFMVRAINPQGLSDPSPMSDPVRTQDSGP 114
>3v6o_A Leptin receptor; receptor-antibody complex, cytokine receptor,
antibody FAB F immunoglobulin fold; HET: NAG; 1.95A
{Homo sapiens}
Length = 206
Score = 50.1 bits (119), Expect = 1e-07
Identities = 23/114 (20%), Positives = 37/114 (32%), Gaps = 5/114 (4%)
Query: 77 IEVVVGVIRQPSNSMLVQSLEDVPSAAPEAMSAGVLNLTSAF-VKWSPPPPQHHNGILLG 135
I + + S V V P ++ A + + W P +N L
Sbjct: 86 IRINHSLGSLDSPPTCVLPDSVVKPLPPSSVKAEITINIGLLKISWEKPVFPENN---LQ 142
Query: 136 YKIQVKAYNSTKILAQMS-LNASTTSVLLNNLTSGAVYTARVVAYTRAGLGPYS 188
++I+ +A + SV L AVY +V GLG +S
Sbjct: 143 FQIRYGLSGKEVQWKMYEVYDAKSKSVSLPVPDLCAVYAVQVRCKRLDGLGYWS 196
>1bpv_A Titin, A71, connectin; fibronectin type III; NMR {Homo sapiens}
SCOP: b.1.2.1
Length = 112
Score = 47.7 bits (114), Expect = 2e-07
Identities = 22/98 (22%), Positives = 37/98 (37%), Gaps = 6/98 (6%)
Query: 98 DVPSAAPEAMSAGVLNLTSAFVKWSPPPPQHHNGILLGYKIQVKAYNSTKILAQMSLNAS 157
D P P ++ + +KW+ P I Y ++ + + + L N
Sbjct: 12 DPPGK-PVPLNITR---HTVTLKWAKPEYTGGFKIT-SYIVEKRDLPNGRWLKANFSNIL 66
Query: 158 TTSVLLNNLTSGAVYTARVVAYTRAG-LGPYSAPVTLV 194
++ LT A Y RV+A AG + P S P +
Sbjct: 67 ENEFTVSGLTEDAAYEFRVIAKNAAGAISPPSEPSDAI 104
>3up1_A Interleukin-7 receptor subunit alpha; cytokine receptor,
fibronectin type 3 fold, membrane and SOL glycosylation,
immune system; HET: NAG FUC NGA; 2.15A {Homo sapiens}
PDB: 3di3_B* 3di2_B*
Length = 223
Score = 49.8 bits (118), Expect = 2e-07
Identities = 20/143 (13%), Positives = 44/143 (30%), Gaps = 4/143 (2%)
Query: 38 EDGRNKYEDGRSKYEDNRSCSGMRMGEINTKMGEVNTRII---EVVVGVIRQPSNSMLVQ 94
+ E C R + + +I + V V + +
Sbjct: 47 DVNTTNLEFEICGALVEVKCLNFRKLQEIYFIETKKFLLIGKSNICVKVGEKSLTCKKID 106
Query: 95 SLEDVPSAAPEAMSAGVLNLTSAF-VKWSPPPPQHHNGILLGYKIQVKAYNSTKILAQMS 153
V AP +S + F V ++ Q +L + + + ++
Sbjct: 107 LTTIVKPEAPFDLSVVYREGANDFVVTFNTSHLQKKYVKVLMHDVAYRQEKDENKWTHVN 166
Query: 154 LNASTTSVLLNNLTSGAVYTARV 176
L+++ ++L L A+Y +V
Sbjct: 167 LSSTKLTLLQRKLQPAAMYEIKV 189
>2gys_A Cytokine receptor common beta chain; dimer of interlocking chains
of fibronectin-III domains, FOU fibronectin-III domains
PER chain; HET: NAG FUC BMA NDG; 2.70A {Homo sapiens}
SCOP: b.1.2.1 b.1.2.1 b.1.2.1 b.1.2.1 PDB: 1gh7_A*
3cxe_A* 1egj_A* 1c8p_A
Length = 419
Score = 50.8 bits (120), Expect = 3e-07
Identities = 21/111 (18%), Positives = 40/111 (36%), Gaps = 13/111 (11%)
Query: 84 IRQPSNSMLVQSLEDVPSAAPEAMSAGVLNLT----SAFVKWSPPPPQHHNGILLGYKIQ 139
++ ++S ++ A P L +T S ++W + I ++IQ
Sbjct: 305 VQPRRAEKHIKSSVNIQMAPPS------LQVTKDGDSYSLRWETMKM-RYEHIDHTFEIQ 357
Query: 140 VKAYNSTKILAQMSLNASTTSVLLNNLTSGAVYTARVVAYTRAGL--GPYS 188
+ +T ++ + S+ L L Y ARV T G +S
Sbjct: 358 YRKDTATWKDSKTETLQNAHSMALPALEPSTRYWARVRVRTSRTGYNGIWS 408
Score = 42.3 bits (98), Expect = 1e-04
Identities = 18/143 (12%), Positives = 34/143 (23%), Gaps = 6/143 (4%)
Query: 85 RQPSNSMLVQSLEDVPSAAPEAMSAGVLNLTSAFVKWSPPPPQ----HHNGILLGYKIQV 140
R + V + V P + + WS + L +++
Sbjct: 93 RPLGTRLTVTLTQHVQPPEPRDLQISTDQ-DHFLLTWSVALGSPQSHWLSPGDLEFEVVY 151
Query: 141 KAYNSTKILAQ-MSLNASTTSVLLNNLTSGAVYTARVVAYTRAGLGPYSAPVTLVMDPHA 199
K + A + N S ++ +L + Y ARV G P +
Sbjct: 152 KRLQDSWEDAAILLSNTSQATLGPEHLMPSSTYVARVRTRLAPGSRLSGRPSKWSPEVCW 211
Query: 200 PPHALPSDILITHLVLIHSPIQV 222
+
Sbjct: 212 DSQPGDEAQPQNLECFFDGAAVL 234
>1eer_B Epobp, erythropoietin receptor; signal transduction, hematopoietic
cytokine, cytokine receptor class 1, complex
(cytokine/receptor); 1.90A {Homo sapiens} SCOP: b.1.2.1
b.1.2.1 PDB: 1cn4_A 2jix_B 1eba_A* 1ern_A 1ebp_A
Length = 227
Score = 48.6 bits (115), Expect = 5e-07
Identities = 27/128 (21%), Positives = 47/128 (36%), Gaps = 7/128 (5%)
Query: 80 VVGVIRQPSNSMLVQSLEDVPSAAPEAMSAGVLNLTSAF-VKWSPPPPQHHNGILLGYKI 138
V P ++ E V AP + A + + + ++W PPP + Y++
Sbjct: 101 VTAASGAPRYHRVIHINEVVLLDAPVGLVARLADESGHVVLRWLPPPETPMTSHIR-YEV 159
Query: 139 QVKAYNSTKILAQMSLNASTTSVLLNNLTSGAVYTARVVAYTRAGL-----GPYSAPVTL 193
V A + ++ + T +L+NL YT V A +S PV+L
Sbjct: 160 DVSAGQGAGSVQRVEILEGRTECVLSNLRGRTRYTFAVRARMAEPSFGGFWSEWSEPVSL 219
Query: 194 VMDPHAPP 201
+ P
Sbjct: 220 LTPSDLDP 227
>1cd9_B G-CSF-R, protein (G-CSF receptor); class1 cytokine, hematopoietic
receptor, signal transduction cytokine; HET: NAG; 2.80A
{Mus musculus} SCOP: b.1.2.1 b.1.2.1 PDB: 1pgr_B 1cto_A
1gcf_A
Length = 215
Score = 48.7 bits (115), Expect = 5e-07
Identities = 15/119 (12%), Positives = 37/119 (31%), Gaps = 9/119 (7%)
Query: 77 IEVVVGVIRQPSNSMLVQSLEDVPSAAPEAMSAGVLN------LTSAFVKWSPPPPQHHN 130
++ + S + + ++ V P + + ++ W P P +
Sbjct: 85 VQAENMLGSSESPKLCLDPMDVVKLEPPMLQALDIGPDVVSHQPGCLWLSWKPWKPSEY- 143
Query: 131 GILLGYKIQVKA-YNSTKILAQMSLNASTTSVLLNNLTSGAVYTARVVAYTRAGLGPYS 188
+ +++ + L +S L L VYT ++ + G +S
Sbjct: 144 -MEQECELRYQPQLKGANWTLVFHLPSSKDQFELCGLHQAPVYTLQMRCIRSSLPGFWS 201
>1iar_B Protein (interleukin-4 receptor alpha chain); cytokine
receptor,interleukin-4, cytokine/receptor complex; 2.30A
{Homo sapiens} SCOP: b.1.2.1 b.1.2.1 PDB: 3bpl_B*
3bpn_B* 3bpo_B*
Length = 207
Score = 48.1 bits (114), Expect = 6e-07
Identities = 25/137 (18%), Positives = 47/137 (34%), Gaps = 6/137 (4%)
Query: 72 VNTRIIEVVVGVIRQPSNSMLVQSLEDVPSAAPEAMSAGVLNLTSAFVKWSPP-PPQHHN 130
V+ + + +Q + E V AP ++ + + WS P PP ++
Sbjct: 69 VSADNYTLDLWAGQQLLWKGSFKPSEHVKPRAPGNLTVHTNVSDTLLLTWSNPYPPDNYL 128
Query: 131 GILLGYKIQVKAYNSTKILAQMSL--NASTTSVLLNNLTSGAVYTARVVAYTRAGLGPYS 188
L Y + + + N ++ + + + L SG Y ARV A+ +A +S
Sbjct: 129 YNHLTYAVNIWSENDPADFRIYNVTYLEPSLRIAASTLKSGISYRARVRAWAQAYNTTWS 188
Query: 189 A---PVTLVMDPHAPPH 202
P
Sbjct: 189 EWSPSTKWHNSYREPFE 205
>3qt2_A Interleukin-5 receptor subunit alpha; cytokine type I receptor
fold, fibronectin type III modules, helical bundle,
cytokine, ligand-receptor complex; HET: BGC; 2.55A {Homo
sapiens}
Length = 317
Score = 48.0 bits (113), Expect = 2e-06
Identities = 20/112 (17%), Positives = 36/112 (32%), Gaps = 5/112 (4%)
Query: 97 EDVPSAAPEAMSAGVLNLTSAFVKWSPPPPQHHNGILLGYKIQVKAYNSTKILAQMSLNA 156
E + P + V L ++W P P Q + L Y++++ A +
Sbjct: 8 EKISLLPPVNFTIKVTGLAQVLLQWKPNPDQEQRNVNLEYQVKINAPKEDDYETR----- 62
Query: 157 STTSVLLNNLTSGAVYTARVVAYTRAGLGPYSAPVTLVMDPHAPPHALPSDI 208
T S + L G + R + L S + P P ++
Sbjct: 63 ITESKAVTILHMGFSASVRTILQNDHSLLASSWASAELHAPPGSPGTSIVNL 114
Score = 36.8 bits (84), Expect = 0.005
Identities = 10/90 (11%), Positives = 28/90 (31%), Gaps = 6/90 (6%)
Query: 87 PSNSMLVQSLEDVPSAAPEAMSAGVLNLTSAFVKWSPPPPQHHNGILLGYKIQVKAYNST 146
L P ++A + T ++W P Y++++ +
Sbjct: 207 RPFDQLFALHAIDQINPPLNVTAEIEG-TRMSIQWEKPVS-AFPIHCFDYEVKIHNTRNG 264
Query: 147 KILAQMSLNASTTSVLLNNLTSGAVYTARV 176
+ + T+ ++ + + Y +V
Sbjct: 265 ----YLQIEKLMTNAFISIIDDLSKYDVQV 290
>2yux_A Myosin-binding protein C, SLOW-type; fibronectin III domain,
structural genomics., NPPSFA; NMR {Homo sapiens}
Length = 120
Score = 45.0 bits (107), Expect = 2e-06
Identities = 20/104 (19%), Positives = 33/104 (31%), Gaps = 3/104 (2%)
Query: 98 DVPSAAPEAMSAGVLNLTSAFVKWSPPPPQHHNGILLGYKIQVKAYNSTKILAQMSLNAS 157
D P P+ + + + + W+PP + I GY IQ + + +
Sbjct: 16 DRPGP-PQIVKIEDVWGENVALTWTPPKDDGNAAIT-GYTIQKAD-KKSMEWFTVIEHYH 72
Query: 158 TTSVLLNNLTSGAVYTARVVAYTRAGLGPYSAPVTLVMDPHAPP 201
TS + L G Y RV + GL +
Sbjct: 73 RTSATITELVIGNEYYFRVFSENMCGLSEDATMTKESAVIARDG 116
>2ic2_A CG9211-PA, GH03927P; IHOG, hedgehog, fibronectin type III, protein
binding; HET: MSE; 1.30A {Drosophila melanogaster} SCOP:
b.1.2.1
Length = 115
Score = 44.5 bits (105), Expect = 3e-06
Identities = 16/110 (14%), Positives = 33/110 (30%), Gaps = 18/110 (16%)
Query: 99 VPSAAPEAMSAGVLNLTSAFVKWSPPPPQHHNGILLGYKIQVKAYNSTK----------- 147
P + L+ S ++W P ++ ++ +K+Q + K
Sbjct: 2 STYP-PTPPNVTRLSDESVMLRWMVP--RNDGLPIVIFKVQYRMVGKRKNWQTTNDNIPY 58
Query: 148 -ILAQMSLNASTTSVLLNNLTSGAVYTARVVAYTRAGLGPYS---APVTL 193
S + + + +L Y R++A S A L
Sbjct: 59 GKPKWNSELGKSFTASVTDLKPQHTYRFRILAVYSNNDNKESNTSAKFYL 108
>2dmk_A Midline 2 isoform 2; midline defect 2, tripartite motif protein 1,
midin-2, ring finger protein 60, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 127
Score = 44.1 bits (104), Expect = 5e-06
Identities = 20/118 (16%), Positives = 32/118 (27%), Gaps = 15/118 (12%)
Query: 98 DVPSAAPEAMSAGVLNLTSAFVKWSPPPPQHHNGILLGYKIQVKAYNSTKILAQMSL--- 154
P+ + + V W + Y++Q + +
Sbjct: 14 TAPNPPSIREELCTASHDTITVHWISDDEFS----ISSYELQYTIFTGQANFISLYNSVD 69
Query: 155 ------NASTTSVLLNNLTSGAVYTARVVAYTRAGLGPYSAPVTLVMDPHAPPHALPS 206
N ++ L SG Y V A +AG S P L P + PS
Sbjct: 70 SWMIVPNIKQNHYTVHGLQSGTRYIFIVKAINQAG-SRNSEPTRLK-TNSQPFKSGPS 125
>2b5i_C Cytokine receptor common gamma chain; four-helix bundle,
fibronectin domain, cytokine-cytokine REC complex; HET:
NAG; 2.30A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 PDB:
3bpl_C* 3qb7_C* 3qaz_C*
Length = 199
Score = 45.1 bits (106), Expect = 7e-06
Identities = 17/117 (14%), Positives = 38/117 (32%), Gaps = 10/117 (8%)
Query: 74 TRIIEVVVGVIRQPSNSMLVQSLEDVPSAAPEAMSAGVLNLTSAFVKWSPPPPQHHNGIL 133
T ++++ + + +++ V APE ++ L+ + + W+ H
Sbjct: 72 TFVVQLQDPREPRRQATQMLKLQNLVIPWAPENLTLHKLSESQLELNWNNRFLNHC---- 127
Query: 134 LGYKIQVKAYNSTKILAQMSLNASTTSVLLNNLTSGAVYTARVVAYTRAGLGPYSAP 190
L + +Q + L ++ YT RV R+ P
Sbjct: 128 LEHLVQYRTDWDHSW--TEQSVDYRHKFSLPSVDGQKRYTFRV----RSRFNPLCGS 178
>2w1n_A O-GLCNACASE NAGJ; hexosaminidase, glycoside hydrolase, fibronectin
type-III, beta-N-acetylglucosaminidase, cohesin,
hydrolase; 1.80A {Clostridium perfringens}
Length = 238
Score = 44.5 bits (104), Expect = 1e-05
Identities = 18/129 (13%), Positives = 39/129 (30%), Gaps = 9/129 (6%)
Query: 64 EINTKMGEVNTRIIEVVVGVIRQPSNSMLVQSLEDVPSAAPEAMSAGVLNLTSAFVKWSP 123
++ V V + + +++ + ++ A +N + V W+
Sbjct: 114 NLSVTNSSVGDGEGLVHEIAGTEKTVNIIEGTSPEIVVNPVRDFKASEINKKNVTVTWTE 173
Query: 124 PPPQHHNGILLGYKIQVKAYNSTKILAQMSLNASTTSVLLNNLTSGAVYTARVVAYTRAG 183
P L GY + + K+ + TS L +Y ++ A G
Sbjct: 174 PE---TTEGLEGYILYK---DGKKV---AEIGKDETSYTFKKLNRHTIYNFKIAAKYSNG 224
Query: 184 LGPYSAPVT 192
+T
Sbjct: 225 EVSSKESLT 233
>2erj_C Cytokine receptor common gamma chain; immune system-cytok complex;
HET: NAG FUC BMA; 3.00A {Homo sapiens} SCOP: b.1.2.1
b.1.2.1
Length = 247
Score = 44.0 bits (103), Expect = 2e-05
Identities = 14/101 (13%), Positives = 34/101 (33%), Gaps = 6/101 (5%)
Query: 76 IIEVVVGVIRQPSNSMLVQSLEDVPSAAPEAMSAGVLNLTSAFVKWSPPPPQHHNGILLG 135
++++ + + +++ V APE ++ L+ + + W+ H L
Sbjct: 112 VVQLQDPREPRRQATQMLKLQNLVIPWAPENLTLHKLSESQLELNWNNRFLNHC----LE 167
Query: 136 YKIQVKAYNSTKILAQMSLNASTTSVLLNNLTSGAVYTARV 176
+ +Q + L ++ YT RV
Sbjct: 168 HLVQYRTDWDHSW--TEQSVDYRHKFSLPSVDGQKRYTFRV 206
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 44.7 bits (105), Expect = 3e-05
Identities = 32/205 (15%), Positives = 61/205 (29%), Gaps = 68/205 (33%)
Query: 56 SCSGMRMGEINTKMGEVNTRIIEVVVGVIRQPSNSMLVQSLEDVPSAAPEAMSAGVLNLT 115
S S + ++ + + N+ + P+ + SL +N
Sbjct: 340 SISNLTQEQVQDYVNKTNSHL----------PAGKQVEISL---------------VNGA 374
Query: 116 SAFVKWSPPPPQHHNGILLGYKIQVKAYNSTKILAQMSLNASTTSVLLNNLTSGAVYTAR 175
V PP L G + ++ K A L+ S ++ R
Sbjct: 375 KNLVVSGPPQS------LYGLNLTLR-----KAKAPSGLD-----------QSRIPFSER 412
Query: 176 VVAYTRAGLGPYSAPVTLVMDPHAP-----PHALPSDILITHLVLIHSPIQVP------G 224
+ ++ L P ++P H+ + D++ ++ IQ+P G
Sbjct: 413 KLKFSNRFL-PVASPF------HSHLLVPASDLINKDLVKNNVSFNAKDIQIPVYDTFDG 465
Query: 225 SD-RSTQSSLPHNQYHSGTRQ--DW 246
SD R S+ R W
Sbjct: 466 SDLRVLSGSISERIVDCIIRLPVKW 490
Score = 44.3 bits (104), Expect = 4e-05
Identities = 50/264 (18%), Positives = 82/264 (31%), Gaps = 78/264 (29%)
Query: 51 YEDNRSCSGMRMGEINTKMGEVNTRIIEVVVGVIRQPSNSMLVQSLEDVPSAAPEAMSAG 110
Y G GE+ + + +V V ++S +S + +A
Sbjct: 249 YVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDS--WESFFV---SVRKA---- 299
Query: 111 VLNLTSAFVKWSPPPPQHHNGILLGYKIQVKAYNSTKILAQM---SLNAS--TTSVLLN- 164
+T F + +G + +AY +T + + SL + S +L+
Sbjct: 300 ---ITVLF--F------------IGVRCY-EAYPNTSLPPSILEDSLENNEGVPSPMLSI 341
Query: 165 -NLTSGAVYTARVVAYTRAGLGPYSAPV--TLVMDPHA-----PPHALPSDILITHLVLI 216
NLT V V T + L P V +LV PP +L L L
Sbjct: 342 SNLTQEQV--QDYVNKTNSHL-PAGKQVEISLVNGAKNLVVSGPPQSLYG--LNLTLRKA 396
Query: 217 HSPIQVPGSDRSTQSSLPHNQ---------------YHS---GTRQDWINEDARMRYEES 258
+P G D QS +P ++ +HS D IN+D
Sbjct: 397 KAP---SGLD---QSRIPFSERKLKFSNRFLPVASPFHSHLLVPASDLINKDLVKNNVSF 450
Query: 259 RGQ------Y--EDSRNYEDGRGN 274
+ Y D + G+
Sbjct: 451 NAKDIQIPVYDTFDGSDLRVLSGS 474
Score = 38.5 bits (89), Expect = 0.003
Identities = 34/184 (18%), Positives = 63/184 (34%), Gaps = 45/184 (24%)
Query: 28 GNYEDGRGKYEDGRNKYEDGRSKYE--DN--RSCSGMRMGEINTKMGEVNTRIIEVVVG- 82
G+ E G G D + + + DN + G + +I N + + G
Sbjct: 1625 GSQEQGMGM--DLYKTSKAAQDVWNRADNHFKDTYGFSILDIVIN----NPVNLTIHFGG 1678
Query: 83 ----VIRQPSNSMLVQSLEDVPSAAPEAMSAGVLNLTSAFVKWSPPPPQHHNGILLGYKI 138
IR+ ++M+ +++ D + + TS + G+L
Sbjct: 1679 EKGKRIRENYSAMIFETIVDGKLKTEKIFKEINEHSTS--YTFRSE-----KGLL----- 1726
Query: 139 QVKAYNSTKILAQMSLNASTTSV-LLNNLTS-GAVYTARVVAYTRAG--LGPYSAPVTL- 193
++T+ Q +L + +L S G + A G LG Y+A +L
Sbjct: 1727 -----SATQF-TQPAL--TLMEKAAFEDLKSKGLIPADATFA----GHSLGEYAALASLA 1774
Query: 194 -VMD 196
VM
Sbjct: 1775 DVMS 1778
Score = 36.6 bits (84), Expect = 0.012
Identities = 26/139 (18%), Positives = 46/139 (33%), Gaps = 38/139 (27%)
Query: 126 PQHHNGILLGYKIQVKAYNSTKILAQMSLNASTTSVLLNNLTSGAVYTARVVA------- 178
Q ++ L+ K +K Y + +I+A+ + + S L + G A++VA
Sbjct: 109 LQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEG---NAQLVAIFGGQGN 165
Query: 179 -----------YTRAGLGPYSAPVTLVMDPHAP------PHALPSDILITH----LVLIH 217
Y Y V ++ A L ++ + T L +
Sbjct: 166 TDDYFEELRDLYQT-----YHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLE 220
Query: 218 SPIQVPGSD--RSTQSSLP 234
+P P D S S P
Sbjct: 221 NPSNTPDKDYLLSIPISCP 239
>3uto_A Twitchin; kinase, muscle sarcomere, transferase; HET: FLC P33;
2.40A {Caenorhabditis elegans} PDB: 1koa_A
Length = 573
Score = 44.1 bits (104), Expect = 4e-05
Identities = 26/182 (14%), Positives = 52/182 (28%), Gaps = 21/182 (11%)
Query: 97 EDVPSAAPEAMSAGVLNLTSAFVKWSPPPPQHHNG--ILLGYKIQVKAYNS-TKILAQMS 153
P P + + + W PP +G ++ Y I+ + + S
Sbjct: 7 VPEPEP-PRFPIIENILDEAVILSWKPPA---LDGGSLVTNYTIEKREAMGGSWSPCAKS 62
Query: 154 LNASTTSVLLNNLTSGAVYTARVVAYTRAGLGPYSAPVTLVMDPHAPPHALPSDILITHL 213
T + L +G Y R++A + G P V+ P
Sbjct: 63 RY---TYTTIEGLRAGKQYEFRIIAENKHGQSKPCEPTAPVLIPGDERKRRRGY------ 113
Query: 214 VLIHSPIQVPGSDRSTQSSLPHNQYHSGTRQDWINEDARMRYEESRGQYEDSRNYEDGRG 273
Q S ++ Y + + + ++++ Y+ E G G
Sbjct: 114 ---DVDEQGKIVRGKGTVSSNYDNYVFDIWKQYYPQPVEIKHDHVLDHYDIHE--ELGTG 168
Query: 274 NY 275
+
Sbjct: 169 AF 170
>3se4_A Interferon alpha/beta receptor 1; type I interferon signaling
complex, extracellular space, IM system receptor; HET:
NAG; 3.50A {Homo sapiens} PDB: 3se3_A*
Length = 414
Score = 43.5 bits (101), Expect = 5e-05
Identities = 19/136 (13%), Positives = 40/136 (29%), Gaps = 5/136 (3%)
Query: 71 EVNTRIIEVVVGVIRQPSNSMLVQSLEDVPSAAPEAMSAGVLNLTSAFVKWSPPPPQHHN 130
+ + + I S +++ + PE + V N + +KW
Sbjct: 177 CLKVKAALLTSWKIGVYSPVHCIKTTVENELPPPENIEVSVQN-QNYVLKWDYTYANMTF 235
Query: 131 GI--LLGYKIQVKAYNSTKI--LAQMSLNASTTSVLLNNLTSGAVYTARVVAYTRAGLGP 186
+ L + + + K + +T V N+ +Y RV A
Sbjct: 236 QVQWLHAFLKRNPGNHLYKWKQIPDCENVKTTQCVFPQNVFQKGIYLLRVQASDGNNTSF 295
Query: 187 YSAPVTLVMDPHAPPH 202
+S + + A
Sbjct: 296 WSEEIKFDTEIQAFLL 311
Score = 41.9 bits (97), Expect = 2e-04
Identities = 16/85 (18%), Positives = 27/85 (31%), Gaps = 11/85 (12%)
Query: 115 TSAFVKWSPPPPQHHNGIL----LGYKIQVKAYNSTKILAQMSLNASTTSVLLNNLTSGA 170
S + P + ++ L Y+I S + + T V + NL
Sbjct: 322 DSFHIYIGAPKQSGNTPVIQDYPLIYEIIFWENTSNA---ERKIIEKKTDVTVPNLKPLT 378
Query: 171 VYTARVVAYTRAGL----GPYSAPV 191
VY + A+T +S V
Sbjct: 379 VYCVKARAHTMDEKLNKSSVFSDAV 403
>3bpo_C Interleukin-13 receptor alpha-1 chain; IL4, IL13, IL4R, IL13R,
cytokine, glycoprotein, IM response, membrane,
phosphoprotein, secreted; HET: NAG; 3.00A {Homo sapiens}
PDB: 3bpn_C*
Length = 314
Score = 43.0 bits (100), Expect = 6e-05
Identities = 18/109 (16%), Positives = 27/109 (24%), Gaps = 7/109 (6%)
Query: 100 PSAAPEAMSAGVLNLTSAFVKWSPPPPQHHNGILLGYKIQVKAYNSTKILAQMSLNASTT 159
+S V NL + W+PP N L Y KI T
Sbjct: 3 TQPPVTNLSVSVENLCTVIWTWNPPEGASSNCS-LWYFSHFGDKQDKKI------APETR 55
Query: 160 SVLLNNLTSGAVYTARVVAYTRAGLGPYSAPVTLVMDPHAPPHALPSDI 208
+ L T P + P P + +++
Sbjct: 56 RSIEVPLNERICLQVGSQCSTNESEKPSILVEKCISPPEGDPESAVTEL 104
Score = 39.9 bits (92), Expect = 6e-04
Identities = 18/165 (10%), Positives = 45/165 (27%), Gaps = 15/165 (9%)
Query: 36 KYEDGRNKYEDGRSKYEDNRSCSGMRMGEINTKMGEVNTRIIEVVVGVIRQPSNSMLVQS 95
+ ++ E + ++ E ++ I V + + +V
Sbjct: 135 WHRSLEKIHQCENIFREGQYFGCSFDLTKVKDSSFEQHSVQIMVKDNAGKIKPSFNIVPL 194
Query: 96 LEDVPSAAPEAMSAGVLNLTSAFVKWSPPPPQHHNGILLGYKIQVKAYNST--------- 146
V P + N +V+W P + L Y+++V +
Sbjct: 195 TSRVKPDPPHIKNLSFHN-DDLYVQWENPQ--NFISRCLFYEVEVNNSQTETHNVFYVQE 251
Query: 147 ---KILAQMSLNASTTSVLLNNLTSGAVYTARVVAYTRAGLGPYS 188
+ +T+ ++ + + T R+ T
Sbjct: 252 AKCENPEFERNVENTSCFMVPGVLPDTLNTVRIRVKTNKLCYEDD 296
>1axi_B HGHBP, growth hormone receptor; complex (hormone-receptor), complex
(hormone-receptor) compl; 2.10A {Homo sapiens} SCOP:
b.1.2.1 b.1.2.1 PDB: 1a22_B 1kf9_B 1hwg_B 1hwh_B 3hhr_B
2aew_A
Length = 236
Score = 42.5 bits (99), Expect = 6e-05
Identities = 19/60 (31%), Positives = 27/60 (45%), Gaps = 4/60 (6%)
Query: 119 VKWSPPP--PQHHNGILLGYKIQVKAYNSTKILAQMSLNASTTSVLLNNLTSGAVYTARV 176
V+W P ++L Y++Q K N TK +M TTSV + +L Y RV
Sbjct: 155 VRWEAPRNADIQKGWMVLEYELQYKEVNETKW--KMMDPILTTSVPVYSLKVDKEYEVRV 212
>3s98_A Interferon alpha/beta receptor 1; human, type I interferons,
receptor chain, ifnar1, fibronect III, type I interferon
receptor chain; HET: NAG; 1.90A {Homo sapiens}
Length = 306
Score = 42.6 bits (99), Expect = 8e-05
Identities = 18/118 (15%), Positives = 35/118 (29%), Gaps = 5/118 (4%)
Query: 86 QPSNSMLVQSLEDVPSAAPEAMSAGVLNLTSAFVKWSPPPPQHHNGI--LLGYKIQVKAY 143
S +++ + PE + V N + +KW + L + +
Sbjct: 188 VYSPVHCIKTTVENELPPPENIEVSVQN-QNYVLKWDYTYANMTFQVQWLHAFLKRNPGN 246
Query: 144 NSTKILAQMSLN--ASTTSVLLNNLTSGAVYTARVVAYTRAGLGPYSAPVTLVMDPHA 199
+ K +T V N+ +Y RV A +S + + A
Sbjct: 247 HLYKWKQIPDCENVKTTQCVFPQNVFQKGIYLLRVQASDGNNTSFWSEEIKFDTEIQA 304
>1k85_A Chitinase A1; fibronectin type III domain, chitin binding domain,
carbohydrase, horizontal gene transfer, hydrolase; NMR
{Bacillus circulans} SCOP: b.1.2.1
Length = 88
Score = 39.2 bits (92), Expect = 1e-04
Identities = 20/92 (21%), Positives = 36/92 (39%), Gaps = 12/92 (13%)
Query: 102 AAPEAMSAGVLNLTSAFVKWSPPPPQHHNGILLGYKIQVKAYNSTKILAQMSLNASTTSV 161
AP +++ +S + W+ N + GY + YN T + + T+
Sbjct: 5 TAPTNLASTAQTTSSITLSWTASTD---NVGVTGYDV----YNGTALAT----TVTGTTA 53
Query: 162 LLNNLTSGAVYTARVVAYTRAG-LGPYSAPVT 192
++ L + YT V A AG + S V+
Sbjct: 54 TISGLAADTSYTFTVKAKDAAGNVSAASNAVS 85
>3d85_D IL-12B, interleukin-12 subunit P40, cytotoxic lymphocyte; FAB,
immune system/cytokine complex; 1.90A {Homo sapiens}
SCOP: b.1.1.4 b.1.2.1 b.1.2.1 PDB: 3d87_B* 3duh_A*
1f42_A* 1f45_A* 3hmx_A* 3qwr_A*
Length = 306
Score = 41.6 bits (96), Expect = 2e-04
Identities = 22/168 (13%), Positives = 51/168 (30%), Gaps = 14/168 (8%)
Query: 26 SRGNYEDGRGKYEDGRNKYEDGRSKYEDNRSCSGMRMGEINTKMGEVNTRIIEVVVGV-- 83
S G + +YE + C + E + I +V V
Sbjct: 140 SSDPQGVTCGAATLSAERVRGDNKEYEYSVECQE----DSACPAAEESLPIEVMVDAVHK 195
Query: 84 IRQPSNSMLVQSLEDVPSAAPEAMSAGVLNLTSAF-VKWSPPP--PQHHNGILLGYKIQV 140
++ + + + P+ + L + V W P H+ L + +QV
Sbjct: 196 LKYEQYTSSFFIRDIIKPDPPKNLQLKPLKNSRQVEVSWEYPDTWSTPHSYFSLTFCVQV 255
Query: 141 KAYNSTKILAQMSLNASTTSVLLNNLTSGAVYTARVVAYTRAGLGPYS 188
+ + + ++ + ++ + + + V A R +S
Sbjct: 256 QGKSKREKKDRVFTDKTSAT-----VICRKNASISVRAQDRYYSSSWS 298
>3tgx_A Interleukin-21 receptor; class I cytokine, class I cytokine
receptor, sugarbridge, fibronectine domain, signaling,
cytokine-cytokine receptor; HET: MAN FUL NAG BMA FUC;
2.80A {Homo sapiens}
Length = 219
Score = 40.5 bits (94), Expect = 3e-04
Identities = 16/104 (15%), Positives = 31/104 (29%), Gaps = 13/104 (12%)
Query: 111 VLNLTSAFVKWSPP---PPQHHNGILLGYKIQVKAYNSTKILAQ----MSLNASTTSVLL 163
V + W P + L Y++Q + ++ +S+++ + S+L
Sbjct: 109 VTFSGQYQISWRSDYEDPAFYMLKGKLQYELQYRNRGDPWAVSPRRKLISVDSRSVSLLP 168
Query: 164 NNLTSGAVYTARVVAYTRAGLGPY------SAPVTLVMDPHAPP 201
+ Y +V A G S PV
Sbjct: 169 LEFRKDSSYELQVRAGPMPGSSYQGTWSEWSDPVIFQTQSEELK 212
>3dlq_R Interleukin-22 receptor subunit alpha-1; cytokine-receptor complex,
fibronectin-III, cytokine, glycoprotein, polymorphism,
secreted, membrane; 1.90A {Homo sapiens} PDB: 3dgc_R*
Length = 211
Score = 39.3 bits (91), Expect = 6e-04
Identities = 29/174 (16%), Positives = 54/174 (31%), Gaps = 17/174 (9%)
Query: 100 PSAAPEAMSAGVLNLTSAFVKWSPPPPQHHNGILLGYKIQVKAYNSTK-ILAQMSLNAST 158
PS + + N + + W P + Y I+ K Y + + +
Sbjct: 4 PSDLLQHVKFQSSNFEN-ILTWDSGPEGTPD---TVYSIEYKTYGERDWVAKKGCQRITR 59
Query: 159 TSVLLNNLTS--GAVYTARVVAYTRAGLGPYSAPVTLVMDPHA---PP--HALPSDILIT 211
S L T +Y ARV A + G H PP + I
Sbjct: 60 KSCNLTVETGNLTELYYARVTAVSAGGRSATKMTDRFSSLQHTTLKPPDVTCISKVRSIQ 119
Query: 212 HLVLIHSPIQVPGSDRSTQSSLPHNQYHSGTR--QDWINEDARMRYEESRGQYE 263
+++H + + +L + +H + +N +M + +YE
Sbjct: 120 --MIVHPTPTPIRAGDGHRLTL-EDIFHDLFYHLELQVNRTYQMHLGGKQREYE 170
>2cui_A Tenascin-X; fibronectin type III domain, extracellular matirx,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
b.1.2.1
Length = 112
Score = 37.6 bits (87), Expect = 8e-04
Identities = 12/87 (13%), Positives = 30/87 (34%), Gaps = 4/87 (4%)
Query: 115 TSAFVKWSPPPPQHHNGILLGYKI---QVKAYNSTKILAQMSLNASTTSVLLNNLTSGAV 171
+S + W PP + +L ++ + + ++ + + S +L +L SG +
Sbjct: 23 SSLRLNWEAPPGAFDSFLLRFGVPSPSTLEPHPRPLLQRELMVPGTRHSAVLRDLRSGTL 82
Query: 172 YTARVVAYTRAGLG-PYSAPVTLVMDP 197
Y+ + + P
Sbjct: 83 YSLTLYGLRGPHKADSIQGTARTLSGP 109
>3lqm_A Interleukin-10 receptor subunit beta; IL-10R2, common chain,
cytokine, IL-10, IL-22, IL- 28, IL-29, disulfide bond,
glycoprotein, membrane; 2.14A {Homo sapiens}
Length = 201
Score = 38.9 bits (90), Expect = 8e-04
Identities = 13/88 (14%), Positives = 27/88 (30%), Gaps = 13/88 (14%)
Query: 115 TSAFVKWSPPPPQHHNGIL--------LGYKIQVKAYNSTKILAQMSLNASTTSVLLNNL 166
+++ P ++ Y +Q + + + + +L NL
Sbjct: 106 DCLHMRFLAPKIENEYETWTMKNVYNSWTYNVQYWKQGTDE---KFQITPQYDFEVLRNL 162
Query: 167 TSGAVYTARVVAYT--RAGLGPYSAPVT 192
Y +V + R G +S PV
Sbjct: 163 EPWTTYCVQVRGFLPDRNKAGEWSEPVC 190
Score = 38.2 bits (88), Expect = 0.001
Identities = 22/143 (15%), Positives = 46/143 (32%), Gaps = 16/143 (11%)
Query: 103 APEAMSAGVLNLTSAFVKWSPPPPQHHNGILLGYKIQVKAYNSTKILAQMSLNASTTSVL 162
PE + +N ++W P L + Q +Y + + T
Sbjct: 4 PPENVRMNSVN-FKNILQWESPAFAKGQ---LTFTAQYLSYRIFQDKCM---QTTLTECD 56
Query: 163 LNNLTSGAVYTARVVAYTRAGLGPYSAPVTLVMDPHAPPHALPSDILITHL-----VLIH 217
++L+ +T RV A +S V + P P + + L +
Sbjct: 57 FSSLSKYGDHTLRVRAEFADE---HSDWVQITFSPVDDTIIGPPGMQVEVLADCLHMRFL 113
Query: 218 SPIQVPGSDRSTQSSLPHN-QYH 239
+P + T ++ ++ Y+
Sbjct: 114 APKIENEYETWTMKNVYNSWTYN 136
>1uc6_A CNTF receptor, ciliary neurotrophic factor receptor alpha;
cytokine, leukemia inhibitory factor, cytokine receptor;
NMR {Homo sapiens} SCOP: b.1.2.1
Length = 109
Score = 37.3 bits (86), Expect = 0.001
Identities = 12/71 (16%), Positives = 26/71 (36%), Gaps = 4/71 (5%)
Query: 119 VKWSPPPP-QHHNGILLGYKIQVKAYNSTKILAQMSLNASTTSVLLNNLTSGAVYTARVV 177
V W P L + ++ + + Q ++ T+ + + +G Y +V
Sbjct: 28 VTWQTPSTWPDPESFPLKFFLRYRPLILDQW--QHVELSNGTAHTITDAYAGKEYIIQVA 85
Query: 178 AYTRAGLGPYS 188
A +G +S
Sbjct: 86 AKDN-EIGTWS 95
>3g9v_A Interleukin 22 receptor, alpha 2; cytokine, cytokine receptor,
receptor, glycoprotein, polymorphism, secreted,
cytokine/cytokine receptor complex; 2.76A {Homo sapiens}
Length = 211
Score = 37.8 bits (87), Expect = 0.002
Identities = 25/140 (17%), Positives = 45/140 (32%), Gaps = 9/140 (6%)
Query: 100 PSAAPEAMSAGVLNLTSAFVKWSPPPPQHHNGILLGYKIQVKAYNSTK-ILAQMSLNAST 158
S P+ + N + ++W P G Y +Q K Y + +
Sbjct: 7 ESLKPQRVQFQSRNFHN-ILQWQPGRA--LTGNSSVYFVQYKIYGQRQWKNKEDCWGTQE 63
Query: 159 TSVLLNNLTS--GAVYTARVVAYTRAGLGPY--SAPVTLVMDPHAPPHALPSDILITHL- 213
S L + TS Y RV A + + + T + P + + L
Sbjct: 64 LSCDLTSETSDIQEPYYGRVRAASAGSYSEWSMTPRFTPWWETKIDPPVMNITQVNGSLL 123
Query: 214 VLIHSPIQVPGSDRSTQSSL 233
V++H+P + S+
Sbjct: 124 VILHAPNLPYRYQKEKNVSI 143
Score = 31.7 bits (71), Expect = 0.19
Identities = 13/89 (14%), Positives = 22/89 (24%), Gaps = 14/89 (15%)
Query: 115 TSAFVKWSPPPPQHHNGIL----------LGYKIQVKAYNSTKILAQMSLNASTTSVLLN 164
S V P + L Y++ + + K Q + +V +
Sbjct: 120 GSLLVILHAPNLPYRYQKEKNVSIEDYYELLYRVFIINNSLEKE--QKVYEGAHRAVEIE 177
Query: 165 NLTSGAVYTARVVAYT--RAGLGPYSAPV 191
LT + Y Y S
Sbjct: 178 ALTPHSSYCVVAEIYQPMLDRRSQRSEER 206
>3mpc_A FN3-like protein; fibronectin, FN(III), unknown function; 1.60A
{Clostridium thermocellum}
Length = 103
Score = 35.1 bits (81), Expect = 0.005
Identities = 10/58 (17%), Positives = 22/58 (37%), Gaps = 1/58 (1%)
Query: 135 GYKIQVKAYNSTKILAQMSLNASTTSVLLNNLTSGAVYTARVVAYTRAGLGPYSAPVT 192
Y ++ ++ S ++ N ++T+ + +G Y V A + SA
Sbjct: 34 SYNVK-RSTKSGGPYTTIATNITSTNYTDTGVATGTKYYYVVSAVSNGVETLNSAEAI 90
>4doh_R Interleukin-20 receptor subunit alpha; IL10 family cytokine
receptor complex, alpha helical cytokin beta sandwhich
receptor fold, signaling complex; HET: NAG; 2.80A {Homo
sapiens}
Length = 221
Score = 35.2 bits (80), Expect = 0.015
Identities = 18/131 (13%), Positives = 40/131 (30%), Gaps = 8/131 (6%)
Query: 115 TSAFVKWSPPPPQHHNGILLGYKIQVKAYNS---TKILAQMSLNASTTSVLLNNLTSGAV 171
++W+PP G+ + Y +Q Y ++N + +
Sbjct: 22 MKNVLQWTPPEG--LQGVKVTYTVQYFIYGQKKWLNKSECRNINRTYCDLSAETSDYEHQ 79
Query: 172 YTARVVAYTRAGLGPY--SAPVTLVMDPHAPPHALPSDILITHL-VLIHSPIQVPGSDRS 228
Y ARV A + S ++ P + + V++ +P + +
Sbjct: 80 YYARVRAIWGTKCSKWAESGRFYPFLETQIGPPEVALTTDEKSISVVLTAPEKWKRNPED 139
Query: 229 TQSSLPHNQYH 239
S+ +
Sbjct: 140 LPVSMQQIYSN 150
Score = 33.7 bits (76), Expect = 0.045
Identities = 14/90 (15%), Positives = 24/90 (26%), Gaps = 16/90 (17%)
Query: 115 TSAFVKWSPPPPQHHN-----------GILLGYKIQVKAYNSTKILAQMSLNASTTSVLL 163
S V + P N L Y + V S + S + +++L
Sbjct: 121 KSISVVLTAPEKWKRNPEDLPVSMQQIYSNLKYNVSVLNTKSNR---TWSQCVTNHTLVL 177
Query: 164 NNLTSGAVYTARVVAYT--RAGLGPYSAPV 191
L +Y V ++ S
Sbjct: 178 TWLEPNTLYCVHVESFVPGPPRRAQPSEKQ 207
>4doh_B Interleukin-20 receptor subunit beta; IL10 family cytokine receptor
complex, alpha helical cytokin beta sandwhich receptor
fold, signaling complex; HET: NAG; 2.80A {Homo sapiens}
Length = 206
Score = 35.0 bits (80), Expect = 0.017
Identities = 13/93 (13%), Positives = 27/93 (29%), Gaps = 13/93 (13%)
Query: 119 VKWSPPPPQHHNGILLGYKIQVKAY------NSTKILAQMSLNASTTS-VLLNNLTSGAV 171
+ WSP + Y ++ + + I + + +++T+
Sbjct: 24 LMWSPVIAPGET---VYYSVEYQGEYESLYTSHIWIPSSWCSLTEGPECDVTDDITATVP 80
Query: 172 YTARVVAYTRAGLGPYS---APVTLVMDPHAPP 201
Y RV A + +S P P
Sbjct: 81 YNLRVRATLGSQTSAWSILKHPFNRQSTILTRP 113
>1oww_A FN, fibronectin first type III module, CIG; fibronectin type III
module, structural protein; NMR {Homo sapiens} SCOP:
b.1.2.1
Length = 98
Score = 32.1 bits (72), Expect = 0.047
Identities = 14/69 (20%), Positives = 30/69 (43%), Gaps = 4/69 (5%)
Query: 115 TSAFVKWSPPPPQHHNGILLGYKIQVKAYNSTKILAQMSLNASTTSVLLNNLTSGAVYTA 174
S ++W+ P P H + Y ++ + NS + ++ S + L G VY
Sbjct: 21 NSHPIQWNAPQPSH----ISKYILRWRPKNSVGRWKEATIPGHLNSYTIKGLKPGVVYEG 76
Query: 175 RVVAYTRAG 183
++++ + G
Sbjct: 77 QLISIQQYG 85
>1y6k_R Interleukin-10 receptor alpha chain; helix bundle, receptor
complex, immune system; 2.52A {Homo sapiens} SCOP:
b.1.2.1 b.1.2.1 PDB: 1j7v_R* 1lqs_R 1y6m_R 1y6n_R
Length = 214
Score = 32.0 bits (72), Expect = 0.16
Identities = 23/147 (15%), Positives = 45/147 (30%), Gaps = 10/147 (6%)
Query: 97 EDVPSAAPEAMSAGVLNLTSAFVKWSPPPPQHHNGILLGYKIQVKAYNS---TKILAQMS 153
++P +P ++ + W+P P Q + Y++ + Y I
Sbjct: 3 TELP--SPPSVWFEAEF-FHHILHWTPIPQQSES---TCYEVALLRYGIESWNSISQCSQ 56
Query: 154 LNASTTSVLLNNLTSGAVYTARVVAYTRAGLGPYSAPVTLVMDPHAPPHALPSDILITHL 213
+ + + +L Y ARV A + ++ T S L H
Sbjct: 57 TLSYDLTAVTLDLYHSNGYRARVRAVDGSRHSQWTVTNTRFSVDEVTLTV-GSVNLEIHN 115
Query: 214 VLIHSPIQVPGSDRSTQSSLPHNQYHS 240
I IQ+P + + +
Sbjct: 116 GFILGKIQLPRPKMAPAQDTYESIFSH 142
>2zkm_X 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase beta-2;
phospholipase C, phosphoinositide phospholipase,
PLC-beta-2, calcium, coiled coil; 1.62A {Homo sapiens}
SCOP: a.39.1.7 b.7.1.1 b.55.1.1 c.1.18.1 PDB: 2fju_B
Length = 799
Score = 29.6 bits (65), Expect = 1.7
Identities = 25/163 (15%), Positives = 41/163 (25%)
Query: 126 PQHHNGILLGYKIQVKAYNSTKILAQMSLNASTTSVLLNNLTSGAVYTARVVAYTRAGLG 185
P +G + I K + + + N A++ Y R G
Sbjct: 370 PIITHGFTMTTDIFFKEAIEAIAESAFKTSPYPIILSFENHVDSPRQQAKMAEYCRTIFG 429
Query: 186 PYSAPVTLVMDPHAPPHALPSDILITHLVLIHSPIQVPGSDRSTQSSLPHNQYHSGTRQD 245
L P P LPS + +LI + S+ S
Sbjct: 430 DMLLTEPLEKFPLKPGVPLPSPEDLRGKILIKNKKNQFSGPTSSSKDTGGEAEGSSPPSA 489
Query: 246 WINEDARMRYEESRGQYEDSRNYEDGRGNYEDGRGKYEDGRNK 288
E + E+ E G + E+ + D
Sbjct: 490 PAVWAGEEGTELEEEEVEEEEEEESGNLDEEEIKKMQSDEGTA 532
>3nxu_A Cytochrome P450 3A4; alpha beta protein, cytochrome P450 fold,
hemoprotein, monoo cytochrome P450 reductase,
endoplasmic reticulum; HET: HEM RIT; 2.00A {Homo
sapiens} PDB: 1w0e_A* 1w0g_A* 2j0d_A* 2v0m_A* 1w0f_A*
1tqn_A* 3ua1_A* 3tjs_A*
Length = 485
Score = 29.1 bits (66), Expect = 2.1
Identities = 7/16 (43%), Positives = 10/16 (62%)
Query: 55 RSCSGMRMGEINTKMG 70
R+C GMR +N K+
Sbjct: 418 RNCIGMRFALMNMKLA 433
>3iox_A AGI/II, PA; alpha helix, PPII helix, supersandwich fold, surface
adhesin WALL, peptidoglycan-anchor, cell adhesion; HET:
PMS; 1.80A {Streptococcus mutans} PDB: 3ipk_A* 1jmm_A
Length = 497
Score = 28.7 bits (62), Expect = 2.7
Identities = 8/43 (18%), Positives = 15/43 (34%)
Query: 11 EDSRNYEDGRGNYEDSRGNYEDGRGKYEDGRNKYEDGRSKYED 53
+ +YE Y+ Y+ Y YED ++ +
Sbjct: 59 DAKADYEAKLAKYQADLAKYQKDLADYPVKLKAYEDEQTSIKA 101
Score = 27.9 bits (60), Expect = 4.8
Identities = 10/46 (21%), Positives = 17/46 (36%)
Query: 11 EDSRNYEDGRGNYEDSRGNYEDGRGKYEDGRNKYEDGRSKYEDNRS 56
+ D + +YE Y+ KY+ Y YED ++
Sbjct: 52 AIKKRNADAKADYEAKLAKYQADLAKYQKDLADYPVKLKAYEDEQT 97
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 27.6 bits (60), Expect = 3.1
Identities = 5/26 (19%), Positives = 13/26 (50%), Gaps = 4/26 (15%)
Query: 94 QSLEDVPSA----APEAMSAGVLNLT 115
Q+L+ + ++ A ++ A + T
Sbjct: 20 QALKKLQASLKLYADDSAPALAIKAT 45
>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR; fatty
acid synthase, acyl-carrier-protein, beta-ketoacyl RED
beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces
cerevisiae}
Length = 1688
Score = 28.3 bits (63), Expect = 4.7
Identities = 6/31 (19%), Positives = 11/31 (35%), Gaps = 6/31 (19%)
Query: 162 LLNNLTSGAVYTARVVAYTRAGLGPYSAPVT 192
+N +++ V + GP PV
Sbjct: 1080 FINTMSAW------VNMLLISSSGPIKTPVG 1104
>1o7x_A Citrate synthase; lyase, tricarboxylic acid cycle; 2.7A {Sulfolobus
solfataricus} SCOP: a.103.1.1
Length = 377
Score = 27.1 bits (61), Expect = 8.6
Identities = 13/54 (24%), Positives = 19/54 (35%), Gaps = 16/54 (29%)
Query: 137 KIQVKAYNSTKIL-AQMSLNASTTSVLLNNLTSGAVYTARVVAYTRAGLGPYSA 189
++ A + IL + ASTT A V A T + YS+
Sbjct: 167 TDEINAMDKALILYTDHEVPASTT-------------AALVAASTLS--DMYSS 205
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.312 0.131 0.381
Gapped
Lambda K H
0.267 0.0761 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,839,070
Number of extensions: 285742
Number of successful extensions: 815
Number of sequences better than 10.0: 1
Number of HSP's gapped: 582
Number of HSP's successfully gapped: 206
Length of query: 308
Length of database: 6,701,793
Length adjustment: 93
Effective length of query: 215
Effective length of database: 4,105,140
Effective search space: 882605100
Effective search space used: 882605100
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 57 (25.7 bits)